HHsearch alignment for GI: 254781225 and conserved domain: smart00763
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.22 E-value=0.0011 Score=42.11 Aligned_cols=55 Identities=24% Similarity=0.388 Sum_probs=46.6
Q ss_pred HHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCC
Q ss_conf 8879999999999999999759874337999970788625789999999723300
Q gi|254781225|r 475 GYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529 (789)
Q Consensus 475 ~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~ 529 (789)
T Consensus 52 ~~fG~e~~i~~~V~~~k~AA~g~~~~k~IllL~GPvGsGKStl~~~Lk~~lE~ys 106 (361)
T smart00763 52 DFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYS 106 (361)
T ss_pred HHCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHH
T ss_conf 3116489999999999999844671256999988998877999999999999862