HHsearch results for GI: 254781225 and protein with PDBid: 1hqc_A
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.22 E-value=0.0025 Score=38.36 Aligned_cols=154 Identities=15% Similarity=0.140 Sum_probs=78.6
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCHH
Q ss_conf 98887999999999999999975987433799997078862578999999972330003442676420124555568988
Q gi|254781225|r 473 VSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS 552 (789)
Q Consensus 473 l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~~~~~~~ 552 (789)
|+++.|.+++.+.+..++-....+....+ -++++|+.|.||+|+..++.+.+|-............. +.....
T Consensus 11 l~divGq~~~~~~l~~~l~~~~~~~~~~~-~iLl~GPpG~GKTtlA~~iA~~l~~~~~~~~~~~~~~~------~~~~~~ 83 (324)
T 1hqc_A 11 LDEYIGQERLKQKLRVYLEAAKARKEPLE-HLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKP------GDLAAI 83 (324)
T ss_dssp TTTCCSCHHHHHHHHHHHHHHHHHCSCCC-CCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCSH------HHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHHHCCCCCC-EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC------HHHHHH
T ss_conf 88837989999999999998873489998-59998979951999999999986889644568632411------068888
Q ss_pred HHHH-CCCEEEEEECCCCCCCCCCCEEEEEE---CCCEEEEEECCCCCCEEEECCEEEEEECCCCCCCCCCCCCEEEEE-
Q ss_conf 9973-89809999346777601310024541---598587321047860687145289997388634267984166468-
Q gi|254781225|r 553 LIRL-MGSRIVIISETNENDEINAAKIKQMT---GGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY- 627 (789)
Q Consensus 553 la~l-~g~r~~~~~E~~~~~~~~~~~~K~lt---ggD~i~ar~~~~~~~~~~~p~~~~~~~~N~~P~~~~~d~~~~rR~- 627 (789)
+... ..+..+...+...........+.... --|.+..............+.+.++++||+...+ +.++.||.
T Consensus 84 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l---~~~l~~~~~ 160 (324)
T 1hqc_A 84 LANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLI---TAPLLSRFG 160 (324)
T ss_dssp HTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSC---SCSTTTTCS
T ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHHCCCCCCCEEEEEEECCHHHC---CHHHHCCHH
T ss_conf 87765215432215776643665530321000010047852686776445588750577631875542---244311122
Q ss_pred EEEECCCCC
Q ss_conf 999658878
Q gi|254781225|r 628 IVIPFDKPI 636 (789)
Q Consensus 628 ~iipF~~~~ 636 (789)
..+.|....
T Consensus 161 ~~~~~~~~~ 169 (324)
T 1hqc_A 161 IVEHLEYYT 169 (324)
T ss_dssp CEEECCCCC
T ss_pred HHHHHCCCC
T ss_conf 444415789