HHsearch results for GI: 254781225 and protein with PDBid: 1hqc_A

>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.22  E-value=0.0025  Score=38.36  Aligned_cols=154  Identities=15%  Similarity=0.140  Sum_probs=78.6

Q ss_pred             HHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCHH
Q ss_conf             98887999999999999999975987433799997078862578999999972330003442676420124555568988
Q gi|254781225|r  473 VSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS  552 (789)
Q Consensus       473 l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~~~~~~~  552 (789)
                      |+++.|.+++.+.+..++-....+....+ -++++|+.|.||+|+..++.+.+|-.............      +.....
T Consensus        11 l~divGq~~~~~~l~~~l~~~~~~~~~~~-~iLl~GPpG~GKTtlA~~iA~~l~~~~~~~~~~~~~~~------~~~~~~   83 (324)
T 1hqc_A           11 LDEYIGQERLKQKLRVYLEAAKARKEPLE-HLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEKP------GDLAAI   83 (324)
T ss_dssp             TTTCCSCHHHHHHHHHHHHHHHHHCSCCC-CCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCSH------HHHHHH
T ss_pred             HHHHCCHHHHHHHHHHHHHHHHHCCCCCC-EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC------HHHHHH
T ss_conf             88837989999999999998873489998-59998979951999999999986889644568632411------068888


Q ss_pred             HHHH-CCCEEEEEECCCCCCCCCCCEEEEEE---CCCEEEEEECCCCCCEEEECCEEEEEECCCCCCCCCCCCCEEEEE-
Q ss_conf             9973-89809999346777601310024541---598587321047860687145289997388634267984166468-
Q gi|254781225|r  553 LIRL-MGSRIVIISETNENDEINAAKIKQMT---GGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY-  627 (789)
Q Consensus       553 la~l-~g~r~~~~~E~~~~~~~~~~~~K~lt---ggD~i~ar~~~~~~~~~~~p~~~~~~~~N~~P~~~~~d~~~~rR~-  627 (789)
                      +... ..+..+...+...........+....   --|.+..............+.+.++++||+...+   +.++.||. 
T Consensus        84 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l---~~~l~~~~~  160 (324)
T 1hqc_A           84 LANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLI---TAPLLSRFG  160 (324)
T ss_dssp             HTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSC---SCSTTTTCS
T ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHHCCCCCCCEEEEEEECCHHHC---CHHHHCCHH
T ss_conf             87765215432215776643665530321000010047852686776445588750577631875542---244311122


Q ss_pred             EEEECCCCC
Q ss_conf             999658878
Q gi|254781225|r  628 IVIPFDKPI  636 (789)
Q Consensus       628 ~iipF~~~~  636 (789)
                      ..+.|....
T Consensus       161 ~~~~~~~~~  169 (324)
T 1hqc_A          161 IVEHLEYYT  169 (324)
T ss_dssp             CEEECCCCC
T ss_pred             HHHHHCCCC
T ss_conf             444415789