HHsearch results for GI: 254781225 and protein with PDBid: 1njg_A
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.58 E-value=0.0052 Score=36.28 Aligned_cols=138 Identities=16% Similarity=0.235 Sum_probs=75.1
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCH-------HHHHHCCCC-
Q ss_conf 988879999999999999999759874337999970788625789999999723300034426-------764201245-
Q gi|254781225|r 473 VSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA-------SDIMQNRPP- 544 (789)
Q Consensus 473 l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~-------~~~~~~~~~- 544 (789)
|+++.+.+++++.|+.++.. + +....++++|+-|.||+++..++...++......... ..+......
T Consensus 22 l~diig~~~~~~~L~~~i~~---~--~~~~~~L~~Gp~G~GKt~~a~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~d 96 (250)
T 1njg_A 22 FADVVGQEHVLTALANGLSL---G--RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVD 96 (250)
T ss_dssp GGGCCSCHHHHHHHHHHHHH---T--CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSS
T ss_pred HHHHCCHHHHHHHHHHHHHC---C--CCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCCCE
T ss_conf 99814939999999999986---9--976059878999987899999999984785567767666546899997489862
Q ss_pred -----CCCCCC-H---HHHH------H-CCCEEEEEECCCCCCCCCC-CEEEEEECCCEEEEEECCCCCCEEEECCEEEE
Q ss_conf -----555689-8---8997------3-8980999934677760131-00245415985873210478606871452899
Q gi|254781225|r 545 -----EAGKAN-P---SLIR------L-MGSRIVIISETNENDEINA-AKIKQMTGGDCMTARLNYGNTYSESPASFTPF 607 (789)
Q Consensus 545 -----~~~~~~-~---~la~------l-~g~r~~~~~E~~~~~~~~~-~~~K~ltggD~i~ar~~~~~~~~~~~p~~~~~ 607 (789)
.++... . ++.. . -+.+++++.|.+.-..-.. +++|.| .+......++
T Consensus 97 ~~e~~~~~~~~i~~ir~l~~~~~~~~~~~~~kviiiDe~d~l~~~a~n~Llk~l----------------E~~~~~~~~I 160 (250)
T 1njg_A 97 LIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTL----------------EEPPEHVKFL 160 (250)
T ss_dssp EEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHH----------------HSCCTTEEEE
T ss_pred EEEECCHHCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHH----------------HCCCCCCEEE
T ss_conf 899610320789999999999974651589879999781539999999999998----------------6278871799
Q ss_pred EECCCCCCCCCCCCCEEEEEEEEECCC
Q ss_conf 973886342679841664689996588
Q gi|254781225|r 608 IVPNKHLFVRNPDDAWWRRYIVIPFDK 634 (789)
Q Consensus 608 ~~~N~~P~~~~~d~~~~rR~~iipF~~ 634 (789)
++||+.+.+. .++-.|..+|.|..
T Consensus 161 l~t~~~~~l~---~ti~SRc~~i~~~~ 184 (250)
T 1njg_A 161 LATTDPQKLP---VTILSRCLQFHLKA 184 (250)
T ss_dssp EEESCGGGSC---HHHHTTSEEEECCC
T ss_pred EECCCHHHHH---HHHHCCCCEEEEEC
T ss_conf 9669845534---87856666323206