HHsearch results for GI: 254781225 and protein with PDBid: 1ro2_A

>1ro2_A Hypothetical protein ORF904; DNA polymerase, primase, replication, polymerization, evolution of nucleic acid polymerizing enzymes; 1.60A {Sulfolobus islandicus} SCOP: d.264.1.2 PDB: 1ro0_A 1rni_A
Probab=99.89  E-value=2e-23  Score=171.90  Aligned_cols=179  Identities=18%  Similarity=0.231  Sum_probs=116.7

Q ss_pred             HHHHHHHHHHHHHCCCEEEEECCCCCCCC--CCCCCCCCCCCHHHHHHH----H-HCCEEEEECCCCCCEEEEEEECCCC
Q ss_conf             67888878999977985977356778787--756545656898999742----0-0788999234779879999646881
Q gi|254781225|r    3 VMQWKEQAKQAIHNGFKLIPLRLGDKRPQ--RLGKWEEQLLSSEKIDKL----P-ACGFGFVCGVGEQPLYAFDIDSKDE   75 (789)
Q Consensus         3 ~~~~~~~~~~~i~~G~~viPi~pg~KrP~--~~~~w~~~~~~~~~i~~~----~-~~giGi~~G~~s~glv~iDiD~~d~   75 (789)
                      .++|   |.+|+++||+|||+.|++|+|.  .|.+|+++.++.++|.+|    | ++||||.||.  +++|+||||.+++
T Consensus         4 ~l~~---A~~y~~~G~~V~Pl~p~~K~P~~~~W~~~~~~~~t~~ei~~w~~~~p~~~NiGI~tG~--sglvViDiD~~~~   78 (216)
T 1ro2_A            4 RIRY---AKWMLEHGFNIIPIDPESKKPVLKEWQKYSHEMPSDEEKQRFLKMIEEGYNYAIPGGQ--KGMVIMDFESKEK   78 (216)
T ss_dssp             HHHH---HHHHHHTTCCCEEECTTTCSBSSTTGGGGGTSCCCHHHHHHHHHHHHHTCEEEEESSG--GGEEEEEESCHHH
T ss_pred             HHHH---HHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCC--CCEEEEECCCCCH
T ss_conf             9999---9999988997996689998578678743146899999999999859975559998178--8889997888520


Q ss_pred             HHHHH-HHHHHHHCCCCCEEEECCCCCEEEEEEECCCCCCCCC--CCCCCCCCEEEECCCCEEEECCCC------CCCCC
Q ss_conf             25678-9998764189976996788965999950731024454--444576753485268438804776------88887
Q gi|254781225|r   76 KTANT-FKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKK--TTESTQGHLDILGCGQYFVAYNIH------PKTKK  146 (789)
Q Consensus        76 ~~~~~-~~~~~~~l~g~p~~~~g~~~~~~~~yr~~~~~~~~~~--~~~~~~~~iEi~~~G~q~V~~gsh------p~Tg~  146 (789)
                      ..... +....+.+..+..+++++. +.|++|+.+..+..+..  ......+.+||++.|+|||+|||.      +.++.
T Consensus        79 ~~~~~~~~~l~~~~~~T~~v~TpsG-G~HlYf~~~~~p~~~~~~~~~~~g~~~iDir~~ggYVVaPgS~i~h~~~~~~~~  157 (216)
T 1ro2_A           79 LKAWIGESALEELCRKTLCTNTVHG-GIHIYVLSNDIPPHKINPLFEENGKGIIDLQSYNSYVLGLGSCVNHLHCTTDKC  157 (216)
T ss_dssp             HHHHHCHHHHHHHHHHSCEEECTTS-CEEEEEECSCCCSSCCCCSEESSSSEEEEEECTTCEEECTTCEEEGGGCCSTTC
T ss_pred             HHHHHHHHHHHHCCCCCEEEECCCC-EEEEEEECCCCCCCCCCCCEECCCCCEEEEEECCCEEEECCEECCCCCCCCCCC
T ss_conf             6666555666620888669988998-589999778878554365332389844899716988995581035666787777


Q ss_pred             CEEECCCCC-CCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             457517765-58722164689999999997620012434543
Q gi|254781225|r  147 EYTWTTPPH-RFKVEDTPLLSEEDVEYLFKFFQEITVPLVKD  187 (789)
Q Consensus       147 ~Y~w~~~~~-~~~~~~~P~i~~~~~~~l~~~~~~~~~~~~~~  187 (789)
                      +|+|..... .....+++.+.+..++.++.++..+.+..+..
T Consensus       158 ~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~g~~  199 (216)
T 1ro2_A          158 PWKEQNYTTCYTLYNELKEISKVDLKSLLRFLAEKGKRLGIT  199 (216)
T ss_dssp             TTTTCSCEEECEESSSCCCCEECCHHHHHHHHHHHHGGGTCE
T ss_pred             CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf             745787302566654334456104678899998766653763