HHsearch results for GI: 254781225 and protein with PDBid: 1sxj_B

>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.57  E-value=0.056  Score=29.41  Aligned_cols=140  Identities=14%  Similarity=0.106  Sum_probs=68.2

Q ss_pred             HHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCC-CCHHHHHHCCCCCCC-CCC
Q ss_conf             988879999999999999999759874337999970788625789999999723300034-426764201245555-689
Q gi|254781225|r  473 VSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVIN-AEASDIMQNRPPEAG-KAN  550 (789)
Q Consensus       473 l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~-~~~~~~~~~~~~~~~-~~~  550 (789)
                      ++++.|.++.++.|+.++-   .+... +  ++++|+.|.||+|+..++.+-++..+... .........++...- ..-
T Consensus        20 ~~diig~~~~~~~L~~~i~---~~~~p-~--lLl~GP~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i   93 (323)
T 1sxj_B           20 LSDIVGNKETIDRLQQIAK---DGNMP-H--MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVVRNQI   93 (323)
T ss_dssp             GGGCCSCTHHHHHHHHHHH---SCCCC-C--EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHHHTHH
T ss_pred             HHHHCCCHHHHHHHHHHHH---CCCCC-E--EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHH
T ss_conf             9993095999999999997---79999-7--9888959998999999999986699777763244110015749999999


Q ss_pred             HHHHH------HCCCEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCCCEEEECCEEEEEECCCCCCCCCCCCCEE
Q ss_conf             88997------389809999346777601310024541598587321047860687145289997388634267984166
Q gi|254781225|r  551 PSLIR------LMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWW  624 (789)
Q Consensus       551 ~~la~------l~g~r~~~~~E~~~~~~~~~~~~K~ltggD~i~ar~~~~~~~~~~~p~~~~~~~~N~~P~~~~~d~~~~  624 (789)
                      .+.+.      -...+++++.|.+.-..-....              + .....+.......++.||+.-.+   ...+.
T Consensus        94 ~~~~~~~~~~~~~~~kiiiide~d~~~~~~q~~--------------l-~~~~e~~~~~~~~i~~~~~~~~i---~~~i~  155 (323)
T 1sxj_B           94 KHFAQKKLHLPPGKHKIVILDEADSMTAGAQQA--------------L-RRTMELYSNSTRFAFACNQSNKI---IEPLQ  155 (323)
T ss_dssp             HHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHT--------------T-HHHHHHTTTTEEEEEEESCGGGS---CHHHH
T ss_pred             HHHHHHCCCCCCCCEEEEEEEECCCCCCHHHHH--------------H-HHHCCCCCCCEEEEEECCCCCCC---CHHHH
T ss_conf             987652023667764899984111111002214--------------5-54013565321344303640213---46777


Q ss_pred             EEEEEEECCCCC
Q ss_conf             468999658878
Q gi|254781225|r  625 RRYIVIPFDKPI  636 (789)
Q Consensus       625 rR~~iipF~~~~  636 (789)
                      .|...+.|...-
T Consensus       156 sRc~~i~~~~~~  167 (323)
T 1sxj_B          156 SQCAILRYSKLS  167 (323)
T ss_dssp             TTSEEEECCCCC
T ss_pred             HHHHHHHHCCCC
T ss_conf             667676623687