HHsearch results for GI: 254781225 and protein with PDBid: 1sxj_B
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.57 E-value=0.056 Score=29.41 Aligned_cols=140 Identities=14% Similarity=0.106 Sum_probs=68.2
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCC-CCHHHHHHCCCCCCC-CCC
Q ss_conf 988879999999999999999759874337999970788625789999999723300034-426764201245555-689
Q gi|254781225|r 473 VSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVIN-AEASDIMQNRPPEAG-KAN 550 (789)
Q Consensus 473 l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~-~~~~~~~~~~~~~~~-~~~ 550 (789)
++++.|.++.++.|+.++- .+... + ++++|+.|.||+|+..++.+-++..+... .........++...- ..-
T Consensus 20 ~~diig~~~~~~~L~~~i~---~~~~p-~--lLl~GP~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~i~~~i 93 (323)
T 1sxj_B 20 LSDIVGNKETIDRLQQIAK---DGNMP-H--MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVVRNQI 93 (323)
T ss_dssp GGGCCSCTHHHHHHHHHHH---SCCCC-C--EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHHHTHH
T ss_pred HHHHCCCHHHHHHHHHHHH---CCCCC-E--EEEECCCCCCHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCHHHHHHHH
T ss_conf 9993095999999999997---79999-7--9888959998999999999986699777763244110015749999999
Q ss_pred HHHHH------HCCCEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCCCEEEECCEEEEEECCCCCCCCCCCCCEE
Q ss_conf 88997------389809999346777601310024541598587321047860687145289997388634267984166
Q gi|254781225|r 551 PSLIR------LMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWW 624 (789)
Q Consensus 551 ~~la~------l~g~r~~~~~E~~~~~~~~~~~~K~ltggD~i~ar~~~~~~~~~~~p~~~~~~~~N~~P~~~~~d~~~~ 624 (789)
.+.+. -...+++++.|.+.-..-.... + .....+.......++.||+.-.+ ...+.
T Consensus 94 ~~~~~~~~~~~~~~~kiiiide~d~~~~~~q~~--------------l-~~~~e~~~~~~~~i~~~~~~~~i---~~~i~ 155 (323)
T 1sxj_B 94 KHFAQKKLHLPPGKHKIVILDEADSMTAGAQQA--------------L-RRTMELYSNSTRFAFACNQSNKI---IEPLQ 155 (323)
T ss_dssp HHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHT--------------T-HHHHHHTTTTEEEEEEESCGGGS---CHHHH
T ss_pred HHHHHHCCCCCCCCEEEEEEEECCCCCCHHHHH--------------H-HHHCCCCCCCEEEEEECCCCCCC---CHHHH
T ss_conf 987652023667764899984111111002214--------------5-54013565321344303640213---46777
Q ss_pred EEEEEEECCCCC
Q ss_conf 468999658878
Q gi|254781225|r 625 RRYIVIPFDKPI 636 (789)
Q Consensus 625 rR~~iipF~~~~ 636 (789)
.|...+.|...-
T Consensus 156 sRc~~i~~~~~~ 167 (323)
T 1sxj_B 156 SQCAILRYSKLS 167 (323)
T ss_dssp TTSEEEECCCCC
T ss_pred HHHHHHHHCCCC
T ss_conf 667676623687