HHsearch results for GI: 254781225 and protein with PDBid: 1sxj_C
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.35 E-value=0.046 Score=29.98 Aligned_cols=139 Identities=12% Similarity=0.122 Sum_probs=72.7
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHH-HHCCCCCCCCCC-
Q ss_conf 988879999999999999999759874337999970788625789999999723300034426764-201245555689-
Q gi|254781225|r 473 VSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI-MQNRPPEAGKAN- 550 (789)
Q Consensus 473 l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~-~~~~~~~~~~~~- 550 (789)
++++.|.++++..|+.++- .+... + ++++|+.|.||+|+...+.+.++...........- ...++-......
T Consensus 24 ~~divg~~~~~~~l~~~i~---~~~~~-~--lLl~GppG~GKTtla~~la~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 97 (340)
T 1sxj_C 24 LDEVYGQNEVITTVRKFVD---EGKLP-H--LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQI 97 (340)
T ss_dssp GGGCCSCHHHHHHHHHHHH---TTCCC-C--EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHHTHH
T ss_pred HHHHCCCHHHHHHHHHHHH---CCCCC-E--EEEECCCCCCHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCHHHHHHHH
T ss_conf 9990594999999999997---79998-6--9888959999999999999986246677634662343347725898888
Q ss_pred HHHHH-----HCCCEEEEEECCCCCCCCCCC-EEEEEECCCEEEEEECCCCCCEEEECCEEEEEECCCCCCCCCCCCCEE
Q ss_conf 88997-----389809999346777601310-024541598587321047860687145289997388634267984166
Q gi|254781225|r 551 PSLIR-----LMGSRIVIISETNENDEINAA-KIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWW 624 (789)
Q Consensus 551 ~~la~-----l~g~r~~~~~E~~~~~~~~~~-~~K~ltggD~i~ar~~~~~~~~~~~p~~~~~~~~N~~P~~~~~d~~~~ 624 (789)
...+. -.+.+++++.|.+.-..-... .+|.|. ++.....++++||+.-.+ ..++.
T Consensus 98 ~~~~~~~~~~~~~~kviiiDe~d~l~~~~qn~Ll~~le----------------~~~~~~~~il~~n~~~~i---~~~l~ 158 (340)
T 1sxj_C 98 KDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIE----------------RYTKNTRFCVLANYAHKL---TPALL 158 (340)
T ss_dssp HHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHH----------------HTTTTEEEEEEESCGGGS---CHHHH
T ss_pred HHHHHHHHHCCCCEEEEEEECHHHHHHHHHHHHHHHHH----------------HCCCCEEEEECCCCHHHH---HHHHH
T ss_conf 88777665145774899995532413777999999998----------------557652664314706552---68775
Q ss_pred EEEEEEECCCCC
Q ss_conf 468999658878
Q gi|254781225|r 625 RRYIVIPFDKPI 636 (789)
Q Consensus 625 rR~~iipF~~~~ 636 (789)
+|..++.|...-
T Consensus 159 sr~~~~~~~~~~ 170 (340)
T 1sxj_C 159 SQCTRFRFQPLP 170 (340)
T ss_dssp TTSEEEECCCCC
T ss_pred HHHHHHHCCCCC
T ss_conf 345510137898