HHsearch results for GI: 254781225 and protein with PDBid: 1sxj_D
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ ATPase, DNA polymerase; HET: ATG ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=90.76 E-value=0.058 Score=29.31 Aligned_cols=140 Identities=11% Similarity=0.079 Sum_probs=68.3
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCC----------CCCCC-HHH----
Q ss_conf 988879999999999999999759874337999970788625789999999723300----------03442-676----
Q gi|254781225|r 473 VSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY----------VINAE-ASD---- 537 (789)
Q Consensus 473 l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~----------~~~~~-~~~---- 537 (789)
++++.|.++.++.|+.++- .....+ ++++|+-|.||+|+..++.+-++... .+... ...
T Consensus 36 ~~divg~~~~~~~L~~~i~----~~~~~~--lLl~Gp~G~GKTt~a~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (353)
T 1sxj_D 36 LDEVTAQDHAVTVLKKTLK----SANLPH--MLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVREK 109 (353)
T ss_dssp TTTCCSCCTTHHHHHHHTT----CTTCCC--EEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHTTH
T ss_pred HHHHCCCHHHHHHHHHHHH----CCCCCE--EEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHCCCCCCCHHHHHH
T ss_conf 9991396999999999997----699875--9988959998999999999844787544544012110134573077889
Q ss_pred HHH-CCCCCCCCCCHHHH--HHCCCEEEEEECCCCCCCCCCCEEEEEECCCEEEEEECCCCCCEEEECCEEEEEECCCCC
Q ss_conf 420-12455556898899--738980999934677760131002454159858732104786068714528999738863
Q gi|254781225|r 538 IMQ-NRPPEAGKANPSLI--RLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHL 614 (789)
Q Consensus 538 ~~~-~~~~~~~~~~~~la--~l~g~r~~~~~E~~~~~~~~~~~~K~ltggD~i~ar~~~~~~~~~~~p~~~~~~~~N~~P 614 (789)
+.. .+..........+- .....+++++.|.+.-..-....+ . +...+......++++||+.-
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~kviiiDe~d~l~~~~~~~l--------------~-~~~e~~~~~~~~i~~~~~~~ 174 (353)
T 1sxj_D 110 VKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSAL--------------R-RTMETYSGVTRFCLICNYVT 174 (353)
T ss_dssp HHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHH--------------H-HHHHHTTTTEEEEEEESCGG
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHH--------------H-HHCCCCCCCCEEEECCCCCC
T ss_conf 99998774422356676504667725999967030689999998--------------7-52036874322322147621
Q ss_pred CCCCCCCCEEEEEEEEECCCCC
Q ss_conf 4267984166468999658878
Q gi|254781225|r 615 FVRNPDDAWWRRYIVIPFDKPI 636 (789)
Q Consensus 615 ~~~~~d~~~~rR~~iipF~~~~ 636 (789)
.+ ...+-+|..+|.|+..-
T Consensus 175 ~i---~~~i~sr~~~i~f~~~~ 193 (353)
T 1sxj_D 175 RI---IDPLASQCSKFRFKALD 193 (353)
T ss_dssp GS---CHHHHHHSEEEECCCCC
T ss_pred CC---CHHHHCCCHHHHCCCCC
T ss_conf 06---73652220122026788