HHsearch results for GI: 254781225 and protein with PDBid: 1u0j_A
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=99.94 E-value=6.1e-29 Score=208.49 Aligned_cols=216 Identities=9% Similarity=0.026 Sum_probs=166.4
Q ss_pred ECCCEEECCCCCCCCCCHHHHCCEECCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECC
Q ss_conf 07937974388855898655010013788887579478999998887999999999999999975987433799997078
Q gi|254781225|r 431 EQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVG 510 (789)
Q Consensus 431 ~~NGv~dl~t~~~~~~~~~~~~t~~~~~~y~~~a~~p~~~~~l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G 510 (789)
++|++.+.+...++.+.+.+|++...+.... ..+.+.+||.- .+- + ..++..++...|.+.+..+.+++++|+|
T Consensus 40 vk~~~~~~~~~~~~~~~~~~~i~~~~~~~d~---~~~~i~~~l~~-q~~-~-~~~~~~~l~~~l~~~~~k~n~~~l~Gp~ 113 (267)
T 1u0j_A 40 IKAALDNAGKIMSLTKTAPDYLVGQQPVEDI---SSNRIYKILEL-NGY-D-PQYAASVFLGWATKKFGKRNTIWLFGPA 113 (267)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHSCSSCCSCG---GGCHHHHHHHH-TTC-C-HHHHHHHHHHHHTTCSTTCCEEEEECST
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHCCCCCCCC---CHHHHHHHHHH-CCC-C-HHHHHHHHHHHHCCCCCCCEEEEEECCC
T ss_conf 9999999999998746999995535866777---61799999987-598-8-8999999999973799762699998899
Q ss_pred CCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCHHHHHHCCCEEEEEECCCCCCCCCCCEEEEEECCCEEEEE
Q ss_conf 86257899999997233000344267642012455556898899738980999934677760131002454159858732
Q gi|254781225|r 511 GSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR 590 (789)
Q Consensus 511 ~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~~~~~~~la~l~g~r~~~~~E~~~~~~~~~~~~K~ltggD~i~ar 590 (789)
+||||+|+++|..++|.+++... .+.++.++.|.|+|+++.+|+..... ..+.+|+|+|||+|.++
T Consensus 114 ~tGKS~f~~~i~~~~g~~~~~~~-------------~~s~F~l~~l~~~~~~~~~e~~~~~~-~~~~~K~l~gGd~v~vd 179 (267)
T 1u0j_A 114 TTGKTNIAEAIAHTVPFYGCVNW-------------TNENFPFNDCVDKMVIWWEEGKMTAK-VVESAKAILGGSKVRVD 179 (267)
T ss_dssp TSSHHHHHHHHHHHSSCEEECCT-------------TCSSCTTGGGSSCSEEEECSCCEETT-THHHHHHHHTTCCEEC-
T ss_pred CCCHHHHHHHHHHHHCCCEEECC-------------CCCCCCCCCCCCCEEEEEECCCCCHH-HHHHHHHHCCCCCEEEE
T ss_conf 88789999999998273145247-------------78887666667987999958986222-89999987489936875
Q ss_pred ECCCCCCEEEECCEEEEEECCCCCCCCCC-------CCCEEEEEEEEECCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 10478606871452899973886342679-------84166468999658878887878334220120447999999999
Q gi|254781225|r 591 LNYGNTYSESPASFTPFIVPNKHLFVRNP-------DDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGV 663 (789)
Q Consensus 591 ~~~~~~~~~~~p~~~~~~~~N~~P~~~~~-------d~~~~rR~~iipF~~~~~~~d~~~~~~~~~~e~~~i~~w~l~g~ 663 (789)
.||++++ +++|+.++++++|++|.+.+. +.|++||+++++|+++||.... .+...|..++++|+.+++
T Consensus 180 ~K~k~~~-~~~~~p~li~snndi~~~~~~~~~s~~~~~~l~~R~~~~~F~~~~p~~~~----~i~~~e~~~f~~W~~~~~ 254 (267)
T 1u0j_A 180 QKCKSSA-QIDPTPVIVTSNTNMCAVIDGNSTTFEHQQPLQDRMFKFELTRRLDHDFG----KVTKQEVKDFFRWAKDHV 254 (267)
T ss_dssp -----CC-EECCCCEEEEESSCTTCEEETTEEECTTHHHHHTTEEEEECCSCCCTTSC----CCCHHHHHHHHHHHHHTC
T ss_pred ECCCCCE-EEECCEEEEEECCCCCCCCCCCCCCCCHHHHHHHHEEEEECCCCCCCCCC----CCCHHHHHHHHHHHHHCC
T ss_conf 1468873-84176089994897765568775531020454650799878982797668----768899999999998366
Q ss_pred HHHHHCCC
Q ss_conf 99998788
Q gi|254781225|r 664 KAYISKGL 671 (789)
Q Consensus 664 ~~~~~~g~ 671 (789)
.++.++..
T Consensus 255 ~~~~~~~~ 262 (267)
T 1u0j_A 255 VEVEHEFY 262 (267)
T ss_dssp CCCCCCSB
T ss_pred HHHHHHHC
T ss_conf 14467640