HHsearch results for GI: 254781225 and protein with PDBid: 3pfi_A
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.69 E-value=0.0033 Score=37.57 Aligned_cols=154 Identities=18% Similarity=0.182 Sum_probs=82.5
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCCCCH
Q ss_conf 99888799999999999999997598743379999707886257899999997233000344267642012455556898
Q gi|254781225|r 472 LVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANP 551 (789)
Q Consensus 472 ~l~~~~~d~e~~~~l~~~~g~~l~g~~~~~~~~~~~G~G~nGKSt~~~~l~~llG~~~~~~~~~~~~~~~~~~~~~~~~~ 551 (789)
-|+++.|.+.++.-+..++-....+....+ .++|+||.|.||+|+..+|.+.++........ ..... ......
T Consensus 27 ~l~dvVGQ~~~~~~l~~~i~~~~~~~~~~~-s~lf~GPPG~GKTTlA~iiA~~~~~~~~~~~a-~~~~~-----~~d~~~ 99 (338)
T 3pfi_A 27 NFDGYIGQESIKKNLNVFIAAAKKRNECLD-HILFSGPAGLGKTTLANIISYEMSANIKTTAA-PMIEK-----SGDLAA 99 (338)
T ss_dssp SGGGCCSCHHHHHHHHHHHHHHHHTTSCCC-CEEEECSTTSSHHHHHHHHHHHTTCCEEEEEG-GGCCS-----HHHHHH
T ss_pred CHHHHCCHHHHHHHHHHHHHHHHHCCCCCC-EEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC-CCCCC-----HHHHHH
T ss_conf 889956929999978999999985388888-48988989987999999999841898555556-43331-----899999
Q ss_pred HHHHHCCCEEEEEECCCCCCCCCCCE-EEEEECCC--EEEEEECCCCCCEEEECCEEEEEECCCCCCCCCCCCCEEEEEE
Q ss_conf 89973898099993467776013100-24541598--5873210478606871452899973886342679841664689
Q gi|254781225|r 552 SLIRLMGSRIVIISETNENDEINAAK-IKQMTGGD--CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYI 628 (789)
Q Consensus 552 ~la~l~g~r~~~~~E~~~~~~~~~~~-~K~ltggD--~i~ar~~~~~~~~~~~p~~~~~~~~N~~P~~~~~d~~~~rR~~ 628 (789)
.+.........+++|...-....... +..+-.+. .+.+..-....+....+.+.++++||+...+. .++..|+.
T Consensus 100 ~~~~~~~~~ilfiDeih~~~~~~q~~ll~~ie~~~i~~i~~~~~~~~~~~~~~~~~~~i~a~~~~~~l~---~~l~sR~~ 176 (338)
T 3pfi_A 100 ILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLS---NPLRDRFG 176 (338)
T ss_dssp HHHTCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSC---HHHHTTCS
T ss_pred HHHCCCCHHHHHHHHHHHCCCCCCCEEECCCCCCEEEEHHHHHHHHCCCCCCCCCEEEEEECCCHHHCC---HHHHHHHH
T ss_conf 865134203676532320254320010034324367541010121023356875324443035365324---14431256
Q ss_pred -EEECCCC
Q ss_conf -9965887
Q gi|254781225|r 629 -VIPFDKP 635 (789)
Q Consensus 629 -iipF~~~ 635 (789)
++.|...
T Consensus 177 ~~~~~~~~ 184 (338)
T 3pfi_A 177 MQFRLEFY 184 (338)
T ss_dssp EEEECCCC
T ss_pred HHHHHHCC
T ss_conf 76654014