BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= gi|254781225|ref|YP_003065638.1| P4 family phage/plasmid
primase [Candidatus Liberibacter asiaticus str. psy62]
(789 letters)
Database: nr
14,124,377 sequences; 4,842,793,630 total letters
Searching..................................................done
Results from round 1
>gi|254781225|ref|YP_003065638.1| P4 family phage/plasmid primase [Candidatus Liberibacter asiaticus
str. psy62]
gi|254040902|gb|ACT57698.1| P4 family phage/plasmid primase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 789
Score = 1640 bits (4246), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 789/789 (100%), Positives = 789/789 (100%)
Query: 1 MPVMQWKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGV 60
MPVMQWKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGV
Sbjct: 1 MPVMQWKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGV 60
Query: 61 GEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120
GEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE
Sbjct: 61 GEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120
Query: 121 STQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEI 180
STQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEI
Sbjct: 121 STQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEI 180
Query: 181 TVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHET 240
TVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHET
Sbjct: 181 TVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHET 240
Query: 241 RGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPK 300
RGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPK
Sbjct: 241 RGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPK 300
Query: 301 GLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLV 360
GLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLV
Sbjct: 301 GLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLV 360
Query: 361 SMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSD 420
SMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSD
Sbjct: 361 SMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSD 420
Query: 421 LLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESE 480
LLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESE
Sbjct: 421 LLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESE 480
Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540
EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ
Sbjct: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540
Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600
NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES
Sbjct: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600
Query: 601 PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFL 660
PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFL
Sbjct: 601 PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFL 660
Query: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSE 720
KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSE
Sbjct: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSE 720
Query: 721 YREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDD 780
YREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDD
Sbjct: 721 YREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDD 780
Query: 781 NSNIIDFKR 789
NSNIIDFKR
Sbjct: 781 NSNIIDFKR 789
>gi|317120690|gb|ADV02513.1| phage associated primase [Liberibacter phage SC1]
gi|317120834|gb|ADV02655.1| phage associated primase [Candidatus Liberibacter asiaticus]
Length = 790
Score = 1588 bits (4111), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 766/790 (96%), Positives = 774/790 (97%), Gaps = 1/790 (0%)
Query: 1 MPVMQWKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGV 60
MP MQWKEQAKQAIHNGFKLIPLRL DKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGV
Sbjct: 1 MPGMQWKEQAKQAIHNGFKLIPLRLRDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGV 60
Query: 61 GEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120
GEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE
Sbjct: 61 GEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120
Query: 121 STQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEI 180
STQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEI
Sbjct: 121 STQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEI 180
Query: 181 TVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHET 240
TVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHET
Sbjct: 181 TVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHET 240
Query: 241 RGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPK 300
RGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPK
Sbjct: 241 RGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPK 300
Query: 301 GLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLV 360
GLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLV
Sbjct: 301 GLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLV 360
Query: 361 SMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSD 420
SMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSD
Sbjct: 361 SMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSD 420
Query: 421 LLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESE 480
LLDSSSRFLGEQDGILDLETGQK+KPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESE
Sbjct: 421 LLDSSSRFLGEQDGILDLETGQKIKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESE 480
Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540
EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ
Sbjct: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540
Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600
NRPPEAGKANPSLIRLMG+R+VIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES
Sbjct: 541 NRPPEAGKANPSLIRLMGARVVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600
Query: 601 PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFL 660
PASFTPFIV NKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFL
Sbjct: 601 PASFTPFIVSNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFL 660
Query: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSE 720
KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSE
Sbjct: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSE 720
Query: 721 YREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIE-KEWKSKRIIKGLKLKPAFESVD 779
YREQELNYDRKRISTRTV LNLKQKGF G + EK + R+I+GLKLKPAFESVD
Sbjct: 721 YREQELNYDRKRISTRTVALNLKQKGFKAGRQWEKPRPNRGRYLRVIEGLKLKPAFESVD 780
Query: 780 DNSNIIDFKR 789
DN+NIIDFKR
Sbjct: 781 DNNNIIDFKR 790
>gi|317120732|gb|ADV02554.1| phage associated primase/P4 family phage/plasmid primase
[Liberibacter phage SC2]
gi|317120793|gb|ADV02614.1| phage associated primase [Candidatus Liberibacter asiaticus]
Length = 790
Score = 1323 bits (3424), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 649/790 (82%), Positives = 700/790 (88%), Gaps = 1/790 (0%)
Query: 1 MPVMQWKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGV 60
M MQWKEQAKQAIHNGFKLIPLR DKRP RLGKWEEQLLSSE+IDKLPACGFG VCGV
Sbjct: 1 MSGMQWKEQAKQAIHNGFKLIPLRFRDKRPLRLGKWEEQLLSSEEIDKLPACGFGLVCGV 60
Query: 61 GEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120
GEQPLYAFDIDSKDEKT N FKDTFEILHGTPIVRIGQKPKILIPFRM+K+G+KKKKT E
Sbjct: 61 GEQPLYAFDIDSKDEKTTNNFKDTFEILHGTPIVRIGQKPKILIPFRMDKDGVKKKKTPE 120
Query: 121 STQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEI 180
S QGHLDILG GQYFVAYNIHP TK+EYTWTTPPHRFK ED PLLS+EDVE K FQ+
Sbjct: 121 SPQGHLDILGYGQYFVAYNIHPITKEEYTWTTPPHRFKAEDLPLLSKEDVECFSKAFQDF 180
Query: 181 TVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHET 240
T PLVK KKSI P K NNNNR YTNREITAFLSCF E+FYNGSHD+WIPV+MAVHHET
Sbjct: 181 TTPLVKAKKSIKPVKLGKNNNNRYYTNREITAFLSCFNEDFYNGSHDDWIPVIMAVHHET 240
Query: 241 RGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPK 300
RGS KG++IARRWSKQGSTYDE NFNYKWDTFD EE GD AKKRSTF SLFYHH KLIP
Sbjct: 241 RGSDKGQDIARRWSKQGSTYDEANFNYKWDTFDCEENGDPAKKRSTFASLFYHHRKLIPD 300
Query: 301 GLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLV 360
GLL RFSDAYNKA+FS++K GHFLY +D K+WYK+D+ N YIW +T DKI IM+FLV
Sbjct: 301 GLLEDRFSDAYNKALFSVFKLGHFLYASDIKSWYKRDETNRYIWRITDDKIAGYIMDFLV 360
Query: 361 SMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSD 420
+ K D FDL EE + + K+PR + Y ++N + S +KSTA +LE+ S F ITSD
Sbjct: 361 AQKNDSFDLCEELVNEDDTKKNPRALYFKVYDKRNACQYSTSKSTANALESKSHFHITSD 420
Query: 421 LLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESE 480
D++ R++GE+DG+LDLETGQ++ PT+ELYITKSTGTPFVEGEPSQEFLDLVSGYFESE
Sbjct: 421 RFDANLRYIGEKDGVLDLETGQRITPTEELYITKSTGTPFVEGEPSQEFLDLVSGYFESE 480
Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540
EVM++FTRCVGMALLGGN+AQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ
Sbjct: 481 EVMNFFTRCVGMALLGGNEAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540
Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600
NRPPEAGKANPSLIRLMG+R+VIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES
Sbjct: 541 NRPPEAGKANPSLIRLMGARVVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600
Query: 601 PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFL 660
PASFTPFIV NKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFL
Sbjct: 601 PASFTPFIVSNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFL 660
Query: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSE 720
KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSE
Sbjct: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSE 720
Query: 721 YREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIE-KEWKSKRIIKGLKLKPAFESVD 779
YREQELNYDRKRISTRTV LNLKQKGF G + EK + R+I+GLKLKPAFESVD
Sbjct: 721 YREQELNYDRKRISTRTVALNLKQKGFKAGRQWEKPRPNRGRYLRVIEGLKLKPAFESVD 780
Query: 780 DNSNIIDFKR 789
DN+NIIDFKR
Sbjct: 781 DNNNIIDFKR 790
>gi|315121955|ref|YP_004062444.1| P4 family phage/plasmid primase [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495357|gb|ADR51956.1| P4 family phage/plasmid primase [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 686
Score = 1073 bits (2774), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 511/686 (74%), Positives = 592/686 (86%), Gaps = 4/686 (0%)
Query: 108 MNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSE 167
M K GIKKK+T +S QGHLDILG GQYFVAYNIHPKTK+EYTWTTPP FK E+ PLLSE
Sbjct: 1 MAKAGIKKKQTPKSQQGHLDILGGGQYFVAYNIHPKTKEEYTWTTPPDAFKAEELPLLSE 60
Query: 168 EDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHD 227
EDVE+LF+FF+E T P+VK KK I K NR+YTNREITAFLSCFGEEF NG+HD
Sbjct: 61 EDVEHLFEFFKESTTPVVKAKKEIKSPKEGNTKGNRRYTNREITAFLSCFGEEFTNGTHD 120
Query: 228 EWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTF 287
EWIPVVMA+HHET+GS +GKE+ARRWSK+GS+YDEENFNYKW TFD EE GD+ KKRSTF
Sbjct: 121 EWIPVVMAIHHETQGSHEGKELARRWSKRGSSYDEENFNYKWSTFDCEEEGDSEKKRSTF 180
Query: 288 TSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLT 347
S+FYHH KLIP G+L RFSDAYNKAMFS++K G+FLY +DTKAWYKKDK N YIW +T
Sbjct: 181 ASIFYHHRKLIPDGILEERFSDAYNKAMFSVFKSGYFLYASDTKAWYKKDKTNRYIWRIT 240
Query: 348 LDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQ 407
DKI IM FL+SMK+D FDL EE E+ + K+PR + Y ++N E S++KSTA
Sbjct: 241 DDKIAGYIMEFLISMKKDAFDLCEEIENKDGTKKNPRALYLKAYAKRNACEQSRSKSTAN 300
Query: 408 SLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ 467
++EA S F I+S++ D++ R++GE+DGILD+ETGQ++ P +ELYITKSTGTPFVEG+PS
Sbjct: 301 AIEAKSPFHISSEIFDANLRYIGERDGILDMETGQQITPKEELYITKSTGTPFVEGKPSA 360
Query: 468 EFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527
EF++LVS YFES+EVM++FTRCVGMALLGGN+AQRFIHIRGVGGSGKSTLMNLIK+AFGN
Sbjct: 361 EFMNLVSNYFESKEVMNFFTRCVGMALLGGNEAQRFIHIRGVGGSGKSTLMNLIKFAFGN 420
Query: 528 QYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCM 587
QYVINAEASD+MQNRPPEAGKANPSLIRLMGSR+VIISETNENDE+NAAKIKQMTGGDCM
Sbjct: 421 QYVINAEASDVMQNRPPEAGKANPSLIRLMGSRVVIISETNENDELNAAKIKQMTGGDCM 480
Query: 588 TARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKL 647
TARLNYGNTYSE+ ASFTPFIV NKHLFVRNPDDAWWRRYIVIPFDKPIANRDA+FAQKL
Sbjct: 481 TARLNYGNTYSEARASFTPFIVSNKHLFVRNPDDAWWRRYIVIPFDKPIANRDATFAQKL 540
Query: 648 ETKYTLEAKKWFLKGVKAYISKG--LDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE 705
ET+Y LEAKKWF++G+KAYI G LDV +PEVC+ AKEEER+GTDTYQAWIDDCCD+G
Sbjct: 541 ETEYALEAKKWFMEGIKAYIRNGRNLDVYVPEVCINAKEEERRGTDTYQAWIDDCCDVGS 600
Query: 706 NLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKE-WKSKR 764
+LWEES LAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGG + +K + K
Sbjct: 601 DLWEESRILAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGREWDKSSSDRGKYLS 660
Query: 765 IIKGLKLKPAFESVDDN-SNIIDFKR 789
+IKGLKLKPAFE +++ +N++DFK+
Sbjct: 661 LIKGLKLKPAFEDIENEPNNVLDFKK 686
>gi|315122922|ref|YP_004063411.1| P4 family phage/plasmid primase [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313496324|gb|ADR52923.1| P4 family phage/plasmid primase [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 333
Score = 556 bits (1434), Expect = e-156, Method: Compositional matrix adjust.
Identities = 268/340 (78%), Positives = 301/340 (88%), Gaps = 18/340 (5%)
Query: 461 VEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNL 520
+ +PS EF++LVS YFESEEVM++FTRCVGMALLGGN+AQRFIHIRGVGGSGKSTLMNL
Sbjct: 1 MRAKPSAEFMNLVSNYFESEEVMNFFTRCVGMALLGGNEAQRFIHIRGVGGSGKSTLMNL 60
Query: 521 IKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQ 580
IK+AFGNQYVINAEASD+MQNRPPEAGKANPSLIRLMGSR+VIISETNENDE+NAAKIKQ
Sbjct: 61 IKFAFGNQYVINAEASDVMQNRPPEAGKANPSLIRLMGSRVVIISETNENDELNAAKIKQ 120
Query: 581 MTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD 640
MTGGDCMTARLNYGNTYSE+ ASFTPFIV NKHLFVRNPDDAWWRRYIVIPFDKPIANRD
Sbjct: 121 MTGGDCMTARLNYGNTYSEARASFTPFIVSNKHLFVRNPDDAWWRRYIVIPFDKPIANRD 180
Query: 641 ASFAQKLETKYTLEAKKWFLKGVKAYISKG--LDVDIPEVCLKAKEEERQGTDTYQAWID 698
A+FAQKLET+Y LEAKKWFL+G+KAYI G LDV +PEVC+ AKEEER+GTDTYQAWID
Sbjct: 181 ATFAQKLETEYALEAKKWFLEGIKAYIRNGRNLDVYVPEVCINAKEEERRGTDTYQAWID 240
Query: 699 DCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEK 758
DCC++GE EES LA+SYSEYREQELNYDRKRISTRTVTLNLKQKGF K ++
Sbjct: 241 DCCEVGEGFLEESSILARSYSEYREQELNYDRKRISTRTVTLNLKQKGF-------KDDR 293
Query: 759 EWKSK--------RIIKGLKLKPAFESVDDN-SNIIDFKR 789
+W+ RII+GLKLKPAFE +++ +N+IDFK+
Sbjct: 294 DWEKPRPDRGRYLRIIRGLKLKPAFEDIENEPNNVIDFKK 333
>gi|315122923|ref|YP_004063412.1| P4 family phage/plasmid primase [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313496325|gb|ADR52924.1| P4 family phage/plasmid primase [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 356
Score = 509 bits (1311), Expect = e-142, Method: Compositional matrix adjust.
Identities = 241/356 (67%), Positives = 289/356 (81%)
Query: 108 MNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSE 167
M K GIKKK+T +S QGHLDILG GQYFVAYNIHPKTK+EYTWTTPP FK E+ PLLSE
Sbjct: 1 MAKAGIKKKQTPKSQQGHLDILGGGQYFVAYNIHPKTKEEYTWTTPPDAFKAEELPLLSE 60
Query: 168 EDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHD 227
EDVE+LF+FF+E T P+VK KK I K NR+YTNREITAFLSCFGEEF NG+HD
Sbjct: 61 EDVEHLFEFFKESTTPVVKAKKEIKSPKEGNTKGNRRYTNREITAFLSCFGEEFTNGTHD 120
Query: 228 EWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTF 287
EWIPVVMA+HHET+GS +GKE+ARRWSK+GS+YDEENFNYKW TFD EE GD+ KKRSTF
Sbjct: 121 EWIPVVMAIHHETQGSHEGKELARRWSKRGSSYDEENFNYKWSTFDCEEEGDSEKKRSTF 180
Query: 288 TSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLT 347
S+FYHH KLIP G+L RFSDAYNKAMFS++K G+FLY +DTKAWYKKDK N YIW +T
Sbjct: 181 ASIFYHHRKLIPDGILEERFSDAYNKAMFSVFKSGYFLYASDTKAWYKKDKTNRYIWRIT 240
Query: 348 LDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQ 407
DKI IM FL+SMK+D FDL EE E+ + K+PR + Y ++N E S++KSTA
Sbjct: 241 DDKIAGYIMEFLISMKKDAFDLCEEIENKDGTKKNPRALYLKAYAKRNACEQSRSKSTAN 300
Query: 408 SLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEG 463
++EA S F I+S++ D++ R++GE+DGILD+ETGQ++ P +ELYITKSTGTPFVEG
Sbjct: 301 AIEAKSPFHISSEIFDANLRYIGERDGILDMETGQQITPKEELYITKSTGTPFVEG 356
>gi|254781190|ref|YP_003065603.1| hypothetical protein CLIBASIA_05485 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040867|gb|ACT57663.1| hypothetical protein CLIBASIA_05485 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 233
Score = 292 bits (748), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 132/233 (56%), Positives = 169/233 (72%)
Query: 41 LSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKP 100
+ + +D GFG +CG+G P+YAFD+D DE+ + F + F+ G PI R+GQ P
Sbjct: 1 MVATDVDHYVYNGFGILCGIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCGKPISRVGQAP 60
Query: 101 KILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVE 160
K L+ FRM + +KK+K+ E QGHL+ L GQ FVAYNIHPKT++ YTW+ PH KVE
Sbjct: 61 KTLMLFRMQETNLKKQKSEEKIQGHLEFLAYGQQFVAYNIHPKTQRAYTWSIAPHALKVE 120
Query: 161 DTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEE 220
+ PLL+ ++VEY F+FF IT P K+K SK W ++NNR+YTN EI AFLSCFGEE
Sbjct: 121 ELPLLTPDEVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFGEE 180
Query: 221 FYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFD 273
FYNGSHDEWIPVVMA+H+ETRGS++GKEI R W K G TYDE++FN KWD+FD
Sbjct: 181 FYNGSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSFD 233
>gi|315122493|ref|YP_004062982.1| P4 family phage/plasmid primase [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495895|gb|ADR52494.1| P4 family phage/plasmid primase [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 120
Score = 214 bits (546), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 98/118 (83%), Positives = 108/118 (91%), Gaps = 2/118 (1%)
Query: 587 MTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQK 646
MTAR NYGNTYSE+ ASFTPFIV NKHLFVRN DDAWWRRYIVIPFDKPIANRDA+FAQK
Sbjct: 1 MTARFNYGNTYSEARASFTPFIVSNKHLFVRNLDDAWWRRYIVIPFDKPIANRDATFAQK 60
Query: 647 LETKYTLEAKKWFLKGVKAYISKG--LDVDIPEVCLKAKEEERQGTDTYQAWIDDCCD 702
LET+Y LEAKKWFL+G+KAYI G LD+D+PEVC+ AKEEER+GTDTYQAWIDDCC+
Sbjct: 61 LETEYALEAKKWFLEGIKAYIRNGRNLDIDVPEVCINAKEEERRGTDTYQAWIDDCCE 118
>gi|9633023|ref|NP_050131.1| putative DNA-polymerase or DNA-primase [Lactobacillus phage phiadh]
gi|5730280|emb|CAB52501.1| putative DNA-polymerase or DNA-primase [Lactobacillus phage phiadh]
Length = 771
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 108/404 (26%), Positives = 193/404 (47%), Gaps = 32/404 (7%)
Query: 303 LASRFSDAY-NKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVS 361
+A RF D + + ++S+ + ++Y +++K+D + ++K ++N L +
Sbjct: 326 MAQRFLDMFPHSIIYSMVDETWYVYNG---SYWKQDNQGL------IEKAADKVINNLKN 376
Query: 362 MKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDL 421
K + PED +++ + +++ E S++ E + + +
Sbjct: 377 EKHVI------PEDVDEDD------YKKAWKKFEKRERSRSSKVNMVNEIKHLVPVLHNQ 424
Query: 422 LDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFES-E 480
D L G +DL G T+ TG F E ++ ++ F++ +
Sbjct: 425 WDQEHMLLNTPSGYIDLTNGTLHNHKYNKMFTQETGVDFSENVDCPLWIKFLNQTFQNDQ 484
Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540
E++ + + +G +L G N Q+ + G G +GKS L+N++KY FG+ Y A+ IMQ
Sbjct: 485 ELIHFVQKIIGYSLTGSNAEQKMFILYGNGRNGKSVLLNIVKYIFGS-YAKTMNATTIMQ 543
Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600
R + A + RL G+R+V+ SE NE D ++ + +KQMTGGD + AR YG +
Sbjct: 544 KRIGSSQGATSDIARLEGARLVVSSEANEGDRLDESLVKQMTGGDTLVARYQYGKDFEFD 603
Query: 601 PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAK---K 657
P F F+ N + D+ WRR ++IPF + + +KLE K E+ K
Sbjct: 604 PV-FKLFMATNHKPKIYGTDEGIWRRLVIIPFTHTVKKENVD--KKLEDKLKAESMGILK 660
Query: 658 WFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCC 701
W ++G + S+GL+ P+V A E R+ D +A+ID+CC
Sbjct: 661 WAIEGAMMWQSEGLNP--PDVIQNAGNEYRKEMDVIEAFIDECC 702
>gi|223044345|ref|ZP_03614380.1| primase [Staphylococcus capitis SK14]
gi|222442313|gb|EEE48423.1| primase [Staphylococcus capitis SK14]
Length = 768
Score = 151 bits (381), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 121/445 (27%), Positives = 203/445 (45%), Gaps = 32/445 (7%)
Query: 304 ASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMK 363
A R D + + Y ++++ D+K W D + +DK+ A + N +S
Sbjct: 323 AERLKDRFGSFIRYNYTSKNWMF-YDSKRWRIDDAGKM---KGLVDKVIAGLKNEKISGS 378
Query: 364 EDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLD 423
D +D E + R W D R N +EN E + I + + D
Sbjct: 379 YDGYDTEEIKK------FRTRHW--KDSRNHNKKENMLK-------ECQHLLPIHNHVFD 423
Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEV 482
S Q+G +DL TGQ ++ K + TK + + + ++ D ++ F ++E+
Sbjct: 424 SDFTLFNTQNGYIDLNTGQLLEHDKNKFFTKISKCEYTDNADCPKWEDFLNDIFLGNQEL 483
Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542
+ + RCVG +L G Q + G G +GKS ++++ FGN Y N IM N
Sbjct: 484 IKFIQRCVGYSLSGYTSEQVLFVLLGNGRNGKSVFLDIMNEVFGN-YATNIRPQAIMANN 542
Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602
+ A+P + +L G+R V +E NE D + IKQ+TGGD +TAR Y N + P
Sbjct: 543 --QKSDASPEIAKLDGARFVTTTEPNEGDRFDEGLIKQLTGGDKVTARKLYENEFEFVP- 599
Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK--PIANRDASFAQKLETKYTLEAKKWFL 660
++ N +VR D+ WRR+++IPFDK P+ D KL+ K KW +
Sbjct: 600 QLKLWMATNHKPYVRGTDEGIWRRFVIIPFDKQIPLKEVDRDLTNKLK-KELPAIMKWCV 658
Query: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSE 720
+G + GL P+ ++E R D+ + ++ D C++GE + + L K+Y
Sbjct: 659 EGYLEWQKIGLSE--PQSVKAQRDEYRTEMDSTELFLRDVCEMGETKFIRTSHLYKAYDI 716
Query: 721 YREQELNYDRKRISTRTVTLNLKQK 745
+ Y R+S+R +++K
Sbjct: 717 WARDNHQY---RMSSRKFRNEMEKK 738
>gi|237653460|ref|YP_002889774.1| P4 family phage/plasmid primase [Thauera sp. MZ1T]
gi|237624707|gb|ACR01397.1| phage/plasmid primase, P4 family [Thauera sp. MZ1T]
Length = 782
Score = 144 bits (363), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 121/504 (24%), Positives = 209/504 (41%), Gaps = 56/504 (11%)
Query: 242 GSSKGKEIARRWSKQGST-YDEENFNYKWDTFDF---EEIGDTAKKRSTFTSLFYHHGKL 297
G + +E+AR W +DE++F W ++D E IG + L +G +
Sbjct: 266 GWNCAEELAREWCMTSPEDFDEDDFGKDWRSYDAQRTERIG-----MGSVFKLAEQNGWV 320
Query: 298 IPKGL----------LASRFSDAYNKAMFSIYKKGHFLYTADTKAW-------YKKDKNN 340
P+ + +A +D N F Y + + W ++ D+
Sbjct: 321 DPRHVVNSTKQPTPDIAQTLNDTSNAERFVRACGERLRYVVELRIWLVWHEGHWRYDRKG 380
Query: 341 VYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENS 400
+I M D +L+ D N K W N + +E
Sbjct: 381 ---------QIVELAKRVATRMFSDAGELATA-ADRNALFK----WANASLQLPRLEAMV 426
Query: 401 KAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPF 460
K A + +++ LD+ LG ++G+++L TG + E ITK +
Sbjct: 427 KL--------AQAPLAVSVSELDADPWLLGVKNGVVELRTGTFRQSRPEDLITKIANVEY 478
Query: 461 VEGEPSQEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMN 519
V G + ++ G + ++ D+ R G L G Q F GVG +GKST++N
Sbjct: 479 VAGATCPTWEAMLDGCMGGNRQLADFIQRAAGYTLTGSTSEQVFFFAYGVGANGKSTVIN 538
Query: 520 LIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIK 579
++ G + + ++ IM R P L RL G R+V + ET + ++ +++K
Sbjct: 539 ALREIMGG-HGLQSQPEVIMAQRNTNPSGPTPELARLAGVRMVAMVETEDGQRLHESRVK 597
Query: 580 QMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF--DKPIA 637
QM+GGD MTAR+ +G + P F ++ N +R D WRR ++IPF P
Sbjct: 598 QMSGGDAMTARVLHGEPFDFVP-KFKLWLAGNHRPVIRGDDHGIWRRIVLIPFLVTIPPE 656
Query: 638 NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWI 697
RD A+KL +Y W ++G + GL D+P ++ ++ + D W+
Sbjct: 657 KRDRMLAEKLRDEYP-GVLNWLIRGCLEWQRVGL--DLPSDVVREVDQYKSDMDLIAQWL 713
Query: 698 DDCCDIGENLWEESHSLAKSYSEY 721
D+ C +G + + S + YS +
Sbjct: 714 DEQCSVGPAMRCRARSAYQDYSTW 737
>gi|302343981|ref|YP_003808510.1| phage/plasmid primase, P4 family [Desulfarculus baarsii DSM 2075]
gi|301640594|gb|ADK85916.1| phage/plasmid primase, P4 family [Desulfarculus baarsii DSM 2075]
Length = 744
Score = 141 bits (356), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 104/360 (28%), Positives = 171/360 (47%), Gaps = 18/360 (5%)
Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVS 474
F++TS++ D+ LG DG++DL TG +E YITK + +L +
Sbjct: 389 FAVTSEIWDADLHLLGTPDGVVDLRTGTLRPARREDYITKLAAVAPARSSDAPLWLRFLD 448
Query: 475 GYFESEEVMDYFTRCV-GMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
+ + ++ F R V G AL G I G GG+GKS +N + G+
Sbjct: 449 EATQGDAMLQRFMRQVAGYALTGDISEHALFFIYGPGGNGKSVFLNTLTNILGDY----- 503
Query: 534 EASDIMQNRPPEAGKANPS-LIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLN 592
A+ M G +P+ L L G+R+V +SET E ++IKQ+TGGD ++AR
Sbjct: 504 AATAAMDTFTASQGDRHPTDLAMLRGARLVSVSETEEGRPWAESRIKQLTGGDKISARFM 563
Query: 593 YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYT 652
+ ++ +P F IV N +RN D+A RR+ +IPF A+ D KL ++Y
Sbjct: 564 RQDFFTYTP-QFKLLIVGNHKPVLRNVDEAARRRFNIIPFVHKPASPDKRLEDKLRSEYP 622
Query: 653 LEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESH 712
+W ++G + GL PE +A D + WI++CC+IG WE +
Sbjct: 623 -AILRWMIEGCLDWRENGLLR--PESVKEATAAYFDEQDLFGQWIEECCEIGRASWETTA 679
Query: 713 SLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLK 772
L +S+ Y ++ + ST+ + NL ++ FI ++ ++RI +G+ +K
Sbjct: 680 RLFESWKNYADRNGEHAG---STKAFSANLAKREFIA----DRRTVFGSTQRIFRGIAVK 732
>gi|120599012|ref|YP_963586.1| P4 family phage/plasmid primase [Shewanella sp. W3-18-1]
gi|120559105|gb|ABM25032.1| phage / plasmid primase, P4 family [Shewanella sp. W3-18-1]
Length = 906
Score = 140 bits (354), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 100/367 (27%), Positives = 176/367 (47%), Gaps = 23/367 (6%)
Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGT---PFVEGEPSQEFLDLV 473
I++ D+ +G +G+LDL TG+ + KE+YI++ + P V +F+D +
Sbjct: 533 ISAKAFDADKMLMGINNGVLDLATGKLLAANKEMYISRYSDINYKPDVTCPRWLQFIDEI 592
Query: 474 SGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
+ E + R VG L G Q + G G +GKST MN+I+ G+ Y +
Sbjct: 593 T--CGDVEYAKFLQRMVGYILTGRTDEQVLFFLYGHGCNGKSTFMNIIQRLMGSYY--HQ 648
Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593
+SD++ NPSL +L GSR+V+ +E E ++ +K MTG D + AR Y
Sbjct: 649 ISSDVLLQSNNSGKGPNPSLAKLNGSRLVVANELPEGSRMDENLVKSMTGSDVIVARQLY 708
Query: 594 GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKY 651
E F +V N +R+ WRR I++PF+ + + D KL +
Sbjct: 709 AKVELEYIPMFKLIMVGNHKPVIRDTSLGMWRRMILLPFNASFSQQQMDPQLMDKLYAEL 768
Query: 652 TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEES 711
+ W L+GV+ ++ G+ IP E R +D ++++C + G+ ++ +
Sbjct: 769 S-GILNWALEGVQMWLKDGIKASIPNSIKSGIAEYRHESDLLAMFLEECTNKGDFVY--T 825
Query: 712 HSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771
L ++ ++ E++ ++ +++ +T L +KGF G SK +IKG+KL
Sbjct: 826 DELYDAFRKWAERDGDW---KMTRNIMTKRLVEKGFEKG--------RHNSKAMIKGIKL 874
Query: 772 KPAFESV 778
K AF+ +
Sbjct: 875 KSAFDDI 881
>gi|125975329|ref|YP_001039239.1| P4 family phage/plasmid primase [Clostridium thermocellum ATCC
27405]
gi|125715554|gb|ABN54046.1| phage / plasmid primase, P4 family [Clostridium thermocellum ATCC
27405]
Length = 717
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 115/412 (27%), Positives = 188/412 (45%), Gaps = 33/412 (8%)
Query: 350 KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSL 409
K T +M F + D+ + ED + R + +N A +L
Sbjct: 310 KETGELMQFAIKTARDMLAEASRIEDEAARKELVRHAMQS----ENAGRLKAMIDVASNL 365
Query: 410 EAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPS--- 466
E I D +DS L ++G++DL+TG+ + +E Y++K VE +PS
Sbjct: 366 EG---MVIMPDEIDSDIWKLNCRNGVVDLKTGELLPHKREYYMSKICP---VEYKPSSKA 419
Query: 467 ---QEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKY 523
EFL+ ++G S+E++ Y + VG +L G Q + G G +GKST +N I
Sbjct: 420 PKWMEFLNTITG--GSKELVRYLQKAVGSSLSGDISEQALFVLYGTGANGKSTFLNTISD 477
Query: 524 AFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTG 583
G+ Y N + M R G + RL G+R+V E NE ++ A IK TG
Sbjct: 478 LLGD-YARNTPSETFMAKRIEAIGN---DIARLQGARLVTAIEINEGQRLSEALIKSFTG 533
Query: 584 GDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDA 641
GD +TAR YG + P FTPF+V N +R+ + WRR +IPF I +D
Sbjct: 534 GDRITARFLYGEYFDFQP-QFTPFLVVNHRPVIRDTSHSIWRRIKLIPFTVTIPEDKKDK 592
Query: 642 SFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCC 701
KL + W ++G + +GL ++P+ KA E R+ DT+ ++I++CC
Sbjct: 593 QLPAKLREELP-GILSWAVEGCLLWQKEGL--NMPDEVKKATEGYREEMDTFSSFIEECC 649
Query: 702 DIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKR 753
+ E + S+ +Y + + +Y + + + ++GF +KR
Sbjct: 650 IVEEGRKVSNRSIRYAYETWCRENGDYP---LGQKLFNAKMTERGF--AVKR 696
>gi|281419305|ref|ZP_06250320.1| phage/plasmid primase, P4 family [Clostridium thermocellum JW20]
gi|281406925|gb|EFB37188.1| phage/plasmid primase, P4 family [Clostridium thermocellum JW20]
Length = 719
Score = 137 bits (346), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 115/412 (27%), Positives = 187/412 (45%), Gaps = 33/412 (8%)
Query: 350 KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSL 409
K T +M F + D+ + ED + R + +N A +L
Sbjct: 312 KETGELMQFAIKTARDMLAEASRIEDEAARKELVRHAMQS----ENAGRLKAMIDVASNL 367
Query: 410 EAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPS--- 466
E I D LDS L ++G++DL+TG+ + +E Y++K VE +PS
Sbjct: 368 EG---MVIMPDELDSDIWKLNCKNGVVDLKTGELLPHKREYYMSKICP---VEYKPSSKA 421
Query: 467 ---QEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKY 523
+FL+ ++G S E++ Y + VG +L G Q + G G +GKST +N I
Sbjct: 422 PRWMDFLNTITG--GSNELVRYLQKAVGSSLSGDISEQALFVLYGTGANGKSTFLNTISE 479
Query: 524 AFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTG 583
G+ Y N + M R G + RL G+R+V E NE ++ A IK TG
Sbjct: 480 LLGD-YTRNTPSETFMAKRIEAIGN---DIARLQGARLVTAIEINEGQRLSEALIKSFTG 535
Query: 584 GDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDA 641
GD +TAR YG + P FTPF+V N +R+ + WRR +IPF I +D
Sbjct: 536 GDRITARFLYGEYFDFQP-QFTPFLVVNHRPVIRDTSHSIWRRIKLIPFTVTIPEDKKDK 594
Query: 642 SFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCC 701
KL + W ++G + +GL ++P+ KA E R+ DT+ ++I++CC
Sbjct: 595 QLPAKLREELP-GILSWAVEGCLLWQKEGL--NMPDEVKKATEGYREEMDTFSSFIEECC 651
Query: 702 DIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKR 753
+ E + S+ +Y + + +Y + + + ++GF +KR
Sbjct: 652 IVEEGRKVSNRSIRYAYETWCRENGDYP---LGQKLFNAKMTERGF--AVKR 698
>gi|22296557|ref|NP_680517.1| putative primase [Lactobacillus phage A2]
gi|6599326|emb|CAB63672.1| putative primase [Lactobacillus phage A2]
Length = 770
Score = 137 bits (344), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 116/435 (26%), Positives = 195/435 (44%), Gaps = 36/435 (8%)
Query: 304 ASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVS-M 362
A RF D + A Y+ KAWY N W L S+++ +V M
Sbjct: 328 AQRFVDHFGDAA---------RYSYVDKAWYV---YNGSYWELDKQGKLGSMVDIVVDDM 375
Query: 363 KEDVFDLSE--EPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSD 420
K + +++ +PE+ K W + + +Q+ NS K+ + L ++ +
Sbjct: 376 KREKIVIADGMDPEEAKKK------W--SKFLKQS-RSNSAKKAMTEQLR--HRLAVMPE 424
Query: 421 LLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE-S 479
D L +G +DL G+ + +K TG + + S E+ + F+
Sbjct: 425 EFDRDKILLNTINGYVDLSDGELHDHDVKKMFSKETGVEYTDTVDSPEWRQFLDQIFDHD 484
Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539
EE++DY + +G +L G + Q + G G +GKS M+ +K+ G+ Y + A IM
Sbjct: 485 EELIDYLQKAIGYSLTGSTEEQVMFILYGNGRNGKSVFMDTLKHVAGS-YAKSMSAKSIM 543
Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599
+ A AN + RL G+R+V SE NE ++ +K++TGGD +TAR YG+ +
Sbjct: 544 IKQSDSA--ANSDIARLKGARLVTASEPNEGVRLDEGLVKELTGGDMVTARFLYGSEFEY 601
Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAKK 657
P F ++ N +R DD WRR ++IPF+ I D A KLE + ++
Sbjct: 602 KP-EFKLWLATNHKPIIRGTDDGIWRRLMLIPFNVQIPENKVDKRLAYKLE-RESVGILN 659
Query: 658 WFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKS 717
W + G + +GL P A + R DT + ++ DCCD+ + + L K+
Sbjct: 660 WAVDGALKWQREGLKA--PASVQAASKSYRAEMDTLELFVRDCCDLRPDYQAPAGELFKA 717
Query: 718 YSEYREQELNYDRKR 732
Y + E Y ++
Sbjct: 718 YQSWAESNGEYKMRK 732
>gi|262047920|ref|ZP_06020865.1| phage primase [Lactobacillus crispatus MV-3A-US]
gi|260571773|gb|EEX28349.1| phage primase [Lactobacillus crispatus MV-3A-US]
Length = 776
Score = 136 bits (343), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 118/431 (27%), Positives = 186/431 (43%), Gaps = 31/431 (7%)
Query: 303 LASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSM 362
+A RF D Y K +FLY+ K WY N Y T I + + + +
Sbjct: 331 MAQRFIDKYGK---------NFLYSYVDKEWYIY--NGSYWSPDTKGYIETAADHVIKDL 379
Query: 363 KED--VFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSD 420
+D V D S +D ++ K+ + N E S + E +T
Sbjct: 380 AKDGPVIDPSLPEKDQDRIIKNWNKFVN--------HERSHKAKVDLTKELQHRLPVTHS 431
Query: 421 LLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFES- 479
+ + L G +DL G+ T TG+ + + S + + F++
Sbjct: 432 MWNQEDMLLNTPSGYVDLTNGKLHPHDISKMFTAETGSEYSDTIDSPNWRKFLKQIFQND 491
Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539
EEV+ Y + +G + G K Q G G +GKS L++ I+ G Y S IM
Sbjct: 492 EEVIHYVQKAIGYSFTGSTKEQVMFIPYGNGRNGKSVLLDTIQDVAGG-YAKTMNVSSIM 550
Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599
+ AN + RL GSR+VI SE NE ++ +KQ+TGGD + AR YG +
Sbjct: 551 TKY--NSNGANSDIARLEGSRMVISSEANEGQRLDEGLVKQLTGGDRIVARQQYGKEFEY 608
Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK--PIANRDASFAQKLETKYTLEAKK 657
P S+ ++ N +R D+ WRR I+IPF+ P D + KLE++ ++
Sbjct: 609 QP-SYKIWMATNHKPLIRGTDEGIWRRLILIPFEYQVPKDKIDRNLKYKLESE-SMGILN 666
Query: 658 WFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKS 717
W ++G + +GL IPE A ++ R+ D +++DCC+IG +S L S
Sbjct: 667 WIVEGAIMWQVEGL--QIPERIKNASQKYREEMDVLSGFVNDCCEIGPGFTAKSGELYDS 724
Query: 718 YSEYREQELNY 728
Y + E Y
Sbjct: 725 YKNWAEDANEY 735
>gi|292491152|ref|YP_003526591.1| phage/plasmid primase, P4 family [Nitrosococcus halophilus Nc4]
gi|291579747|gb|ADE14204.1| phage/plasmid primase, P4 family [Nitrosococcus halophilus Nc4]
Length = 715
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 103/356 (28%), Positives = 164/356 (46%), Gaps = 18/356 (5%)
Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTP 459
S S A +LE ++ LD+ G ++G++DL TGQ P Y+TK
Sbjct: 335 SNMLSLAATLEG---IALAPHQLDADPYAFGVENGVVDLRTGQLRPPNTVDYLTKFGHVG 391
Query: 460 FVEGE--PSQE--FLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKS 515
F G P E L+++ G ++++ + R VG L+GGN Q + G G +GKS
Sbjct: 392 FQPGAQCPRWEHFVLEVMGG---DKDLVSFLQRAVGATLVGGNSDQVIFILHGGGANGKS 448
Query: 516 TLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA 575
TL+ +I+ G+ Y A + NR G ++RL +R+V+ SE E + +N
Sbjct: 449 TLLRIIQTLMGS-YARAAGNALFTVNRFQNQGGPREDIVRLKDARMVLTSELGEGEILNE 507
Query: 576 AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP 635
+K+MTG D +T R+ YG E FTP++ N +R D A WRR +IPF++
Sbjct: 508 DLVKRMTGDDTLTGRVPYGKASIEFRPQFTPWMATNHKPIIRGDDHAIWRRVKLIPFEQT 567
Query: 636 IANR--DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTY 693
A + D + L + W ++G A+ GL P+V +A E R D
Sbjct: 568 FAGKKQDKGLSHALLQELP-GILNWAIQGCLAWQKGGLTP--PQVVEEATREYRSEMDLL 624
Query: 694 QAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKR--ISTRTVTLNLKQKGF 747
W+++ C G ++ L + Y ++ E + K+ + R L KGF
Sbjct: 625 GEWLEERCVQGAEHKAKNADLYQDYLDWSEAQYGIRGKKHCLDPRVFGRKLAAKGF 680
>gi|125975346|ref|YP_001039256.1| P4 family phage/plasmid primase [Clostridium thermocellum ATCC
27405]
gi|125715571|gb|ABN54063.1| phage / plasmid primase, P4 family [Clostridium thermocellum ATCC
27405]
Length = 717
Score = 136 bits (342), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 113/412 (27%), Positives = 187/412 (45%), Gaps = 33/412 (8%)
Query: 350 KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSL 409
K T +M F + D+ + ED + R + +N A +L
Sbjct: 310 KETGELMQFAIKTARDMLAEASRIEDEAARKELVRHAMQS----ENAGRLKAMIDVASNL 365
Query: 410 EAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPS--- 466
E I D LDS L ++G++DL+TG+ + +E Y++K VE +PS
Sbjct: 366 EG---MVIMPDELDSDIWKLNCKNGVVDLKTGELLSHKREYYMSKICP---VEYKPSSKA 419
Query: 467 ---QEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKY 523
+FL+ ++G S E++ Y + VG +L G Q + G G +GKST +N +
Sbjct: 420 PRWMDFLNTITG--GSNELVRYLQKAVGSSLSGDISEQALFVLYGTGANGKSTFLNTVSD 477
Query: 524 AFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTG 583
G+ Y N + M R G + RL G+R+V E NE ++ A IK TG
Sbjct: 478 LLGD-YARNTPSETFMAKRIEAIGN---DIARLQGARLVTAIEINEGQRLSEALIKSFTG 533
Query: 584 GDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDA 641
GD +TAR YG + P FTPF+V N +R+ + WRR +IPF I +D
Sbjct: 534 GDRITARFLYGEYFDFQP-QFTPFLVVNHRPVIRDTSHSIWRRIKLIPFTVTIPEDKKDK 592
Query: 642 SFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCC 701
KL + W ++G + +GL ++P+ +A + RQ DT+ ++I++CC
Sbjct: 593 QLPAKLREELP-GILSWAVEGCLIWQKEGL--NMPDEVKEATDGYRQEMDTFSSFIEECC 649
Query: 702 DIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKR 753
+ E + S+ +Y + + +Y + + + ++GF +KR
Sbjct: 650 IVEEGRKVSNRSIRYAYETWCRENGDYP---LGQKLFNAKMTERGF--AVKR 696
>gi|120601927|ref|YP_966327.1| hypothetical protein Dvul_0879 [Desulfovibrio vulgaris DP4]
gi|120562156|gb|ABM27900.1| plasmid/phage primase, P4 family [Desulfovibrio vulgaris DP4]
Length = 738
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 103/360 (28%), Positives = 170/360 (47%), Gaps = 25/360 (6%)
Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVS 474
F++TS + D+ LG DG++DL +G + +E +ITK+T + + +
Sbjct: 388 FAVTSGIWDADHYLLGTPDGVVDLRSGVLLPARREDFITKTTTVAPAASSEAPLWSRFLH 447
Query: 475 GYFESEEVMDYFTRCV-GMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
+ + + F R + G AL G I G GG+GKS +N I G Y A
Sbjct: 448 EATQGDVALQRFMRQIAGYALTGDISEHALFFIYGPGGNGKSVFLNTINNILG-AYTATA 506
Query: 534 EASDIMQNRPPEAGKANPS-LIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLN 592
+ ++ G +P+ L L G+R+V +SET E ++IKQ+TGGD +TAR
Sbjct: 507 AMDTFVASK----GDRHPTDLAMLRGARLVSVSETEEGRAWAESRIKQLTGGDQVTARFM 562
Query: 593 YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYT 652
+ ++ +P F IV N ++N DDA RR+ +IPF A D +KL +Y
Sbjct: 563 RQDFFTFTP-QFKLLIVGNHKPVLKNVDDAARRRFNIIPFVHKPATPDKQLEEKLRAEYP 621
Query: 653 LEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESH 712
+W ++G + GL PE +A D + WI++CC++G E +
Sbjct: 622 -AILRWMIEGCLDWQENGLVR--PESVREATASYFDEQDLFGQWIEECCEVGAMYSETTT 678
Query: 713 SLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGF----------IGGIKREKIEKEWKS 762
+L S+ Y E+ + S + + NL ++GF GIK++K E++W++
Sbjct: 679 ALFDSWKSYAERNGEHPG---SAKAFSANLCKRGFTSGRTMSSRYFSGIKKKK-EQDWQA 734
>gi|160898867|ref|YP_001564449.1| P4 family phage/plasmid primase [Delftia acidovorans SPH-1]
gi|160364451|gb|ABX36064.1| phage/plasmid primase, P4 family [Delftia acidovorans SPH-1]
Length = 857
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 94/313 (30%), Positives = 153/313 (48%), Gaps = 13/313 (4%)
Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF-LDLVSG 475
+ S LD LG ++G++DL TG + + EL IT S G + G F L
Sbjct: 502 VPSSELDKHRHLLGVKNGVVDLRTGVLMPASPELRITLSAGCEYNPGAKCPLFEQTLRDV 561
Query: 476 YFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535
+F+ E+++Y R G AL G + G G +GKST+ N ++ FG Y +A+A
Sbjct: 562 FFDDLEMVEYVARTFGYALQGQPREDMMFIAFGNGANGKSTIFNAVRKVFGG-YARSADA 620
Query: 536 SDIMQNR-PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
+ + + AG L+RL G+R V ++E +E E+ +K MTGGD +TAR
Sbjct: 621 ASFISDAMGGNAGGPREDLLRLRGARFVYVNEPDEGGELREGAVKAMTGGDAITARGIQA 680
Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLE 654
E ++T ++ N ++ D+ WRR ++PF++ N D + + + LE
Sbjct: 681 KHSIEIEPTWTVYMPTNHKPIIKGTDNGIWRRMGLLPFERDFRN-DPHIVKDDQRREKLE 739
Query: 655 AKKWFLKGVKAYISK-GL-----DVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLW 708
A+ L G+ A I + G+ ++ P L A + R+ D WI++CC+I ENL
Sbjct: 740 AE---LPGILALIVRAGMRYRQSGLNPPAKVLAASADYRKDMDLLGEWIEECCEIDENLH 796
Query: 709 EESHSLAKSYSEY 721
+ L +S+ Y
Sbjct: 797 TKVSDLWESWETY 809
Score = 42.0 bits (97), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 35/77 (45%), Gaps = 12/77 (15%)
Query: 197 WTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQ 256
WT + R+Y C S EW+ +MA+HHE GS ++A WS
Sbjct: 231 WTMDQAREY-------LFDCKASV----SRAEWLNALMALHHEFDGSEDALDLADEWSAT 279
Query: 257 GSTY-DEENFNYKWDTF 272
G +Y ++ +WD+F
Sbjct: 280 GDSYAGRKDVEGRWDSF 296
>gi|302344019|ref|YP_003808548.1| phage/plasmid primase, P4 family [Desulfarculus baarsii DSM 2075]
gi|301640632|gb|ADK85954.1| phage/plasmid primase, P4 family [Desulfarculus baarsii DSM 2075]
Length = 749
Score = 134 bits (338), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 110/403 (27%), Positives = 188/403 (46%), Gaps = 35/403 (8%)
Query: 386 WFNTDYRRQNVEENSK--AKSTAQSLEAGSI---------FSITSDLLDSSSRFLGEQDG 434
W R+ +SK A + +++ AG++ F++TS++ D+ LG DG
Sbjct: 354 WARKLCRKAAAGMDSKKVAATLSKAATAGAVERFAQTDRAFAVTSEIWDADLHLLGTPDG 413
Query: 435 ILDLETGQKVKPTKELYITKSTGTPFVEGEPS---QEFLDLVSGYFESEEVMDYFTRCV- 490
++DL TG +E Y+TK + + FLD + + + ++ F + V
Sbjct: 414 VVDLRTGTLRPARREDYLTKLAAVAPARSSDAPLWRRFLDEAT---QGDAMLQRFMQQVA 470
Query: 491 GMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKAN 550
G AL G I G GG+GKS +N + G+ A+ M G +
Sbjct: 471 GYALTGDISEHALFFIYGPGGNGKSVFLNTLTNILGDY-----AATAAMDTFTASQGDRH 525
Query: 551 PS-LIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609
P+ L L G+R+V +SET E ++IKQ+TGGD ++AR + ++ +P F IV
Sbjct: 526 PTDLAMLRGARLVSVSETEEGRPWAESRIKQLTGGDKISARFMRQDFFTYTP-QFKLLIV 584
Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISK 669
N +RN D+A RR+ +IPF A+ D KL +Y +W ++G +
Sbjct: 585 GNHKPVLRNVDEAARRRFNIIPFVHKPASPDKRLEDKLRAEYP-AILRWMIEGCLDWREN 643
Query: 670 GLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYD 729
GL PE +A D + WI++CC++G+ WE + L +S+ Y ++ +
Sbjct: 644 GLLR--PESVKEATAAYFDEQDLFGQWIEECCEVGKASWETTARLFESWKNYADRNGEHA 701
Query: 730 RKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLK 772
ST+ + NL ++ FI ++ ++RI +G+ +K
Sbjct: 702 G---STKAFSANLAKREFIA----DRRTVFGSTQRIFRGIAVK 737
>gi|281419521|ref|ZP_06250534.1| phage/plasmid primase, P4 family [Clostridium thermocellum JW20]
gi|281406812|gb|EFB37077.1| phage/plasmid primase, P4 family [Clostridium thermocellum JW20]
Length = 719
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 112/412 (27%), Positives = 188/412 (45%), Gaps = 33/412 (8%)
Query: 350 KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSL 409
K T +M F + D+ + ED + R + +N A +L
Sbjct: 312 KETGELMQFAIKTARDMLAEASRIEDEAMRKELVRHAMQS----ENAGRLKAMIDVASNL 367
Query: 410 EAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPS--- 466
E I D LD+ L ++G+++L+TG+ + +E Y++K VE +PS
Sbjct: 368 EG---LVIMPDELDADIWKLNCKNGVVNLKTGELLPHKREYYMSKICP---VEYKPSSKA 421
Query: 467 ---QEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKY 523
+FL+ ++G S+E++ Y + VG +L G Q + G G +GKST +N I
Sbjct: 422 PRWMDFLNTITG--GSKELVRYLQKAVGSSLSGDISEQALFVLYGTGANGKSTFLNTISE 479
Query: 524 AFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTG 583
G+ Y N + M R G + RL G+R+V E NE ++ A IK TG
Sbjct: 480 LLGD-YARNTPSETFMAKRIEAIGN---DIARLQGARLVTAIEINEGQRLSEALIKSFTG 535
Query: 584 GDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDA 641
GD +TAR YG + P FTPF+V N +R+ + WRR +IPF I +D
Sbjct: 536 GDRITARFLYGEYFDFQP-QFTPFLVVNHRPVIRDTSHSIWRRIKLIPFTVTIPEDKKDK 594
Query: 642 SFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCC 701
KL + W ++G + +GL ++P+ +A E R+ DT+ ++I++CC
Sbjct: 595 QLPAKLREELP-GILSWAVEGCLLWQKEGL--EMPDEVKEATEGYREEMDTFSSFIEECC 651
Query: 702 DIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKR 753
+ E + S+ +Y + + +Y + + + ++GF +KR
Sbjct: 652 IVEEGRKVSNRSIRYAYETWCRENGDYP---LGQKLFNAKMTERGF--AVKR 698
>gi|125974487|ref|YP_001038397.1| P4 family phage/plasmid primase [Clostridium thermocellum ATCC
27405]
gi|125714712|gb|ABN53204.1| phage / plasmid primase, P4 family [Clostridium thermocellum ATCC
27405]
Length = 717
Score = 134 bits (337), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 113/412 (27%), Positives = 186/412 (45%), Gaps = 33/412 (8%)
Query: 350 KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSL 409
K T +M F + D+ + + ED + + + +N A +L
Sbjct: 310 KETGELMQFAIKTARDMLAEASQIEDEATRKE----LVHHAMQSENAGRLKAMIDVASNL 365
Query: 410 EAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ-- 467
E I D LDS L ++G++DL+TG+ + +E Y++K VE P
Sbjct: 366 EG---LIIMPDELDSDIWKLNCKNGVVDLKTGELLPHKREYYMSKICP---VEYSPESKA 419
Query: 468 ----EFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKY 523
EFL+ ++G S E++ Y + VG +L G Q + G G +GKST +N I
Sbjct: 420 PRWIEFLNTITG--GSNELVRYLQKAVGSSLSGDISEQALFVLYGTGANGKSTFLNTISD 477
Query: 524 AFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTG 583
G+ Y N + M R G + RL G+R+V E NE ++ A IK TG
Sbjct: 478 LLGD-YARNTPSETFMAKRIEAIGN---DIARLQGARLVTAIEINEGQRLSEALIKSFTG 533
Query: 584 GDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDA 641
GD +TAR YG + P FTPF+V N +R+ + WRR +IPF I +D
Sbjct: 534 GDRITARFLYGEYFDFQP-QFTPFLVVNHRPVIRDTSHSIWRRIKLIPFTVTIPEDKKDK 592
Query: 642 SFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCC 701
KL + W ++G + +GL ++P+ +A E R+ DT+ ++I++CC
Sbjct: 593 QLPAKLREELP-GILSWAVEGCLLWQKEGL--EMPDEVKEATEGYREEMDTFSSFIEECC 649
Query: 702 DIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKR 753
+ E + S+ +Y + + +Y + + + ++GF +KR
Sbjct: 650 IVEEGRKVSNRSIRYAYETWCRENGDYP---LGQKLFNAKMTERGF--AVKR 696
>gi|284801589|ref|YP_003413454.1| hypothetical protein LM5578_1342 [Listeria monocytogenes 08-5578]
gi|284994731|ref|YP_003416499.1| hypothetical protein LM5923_1295 [Listeria monocytogenes 08-5923]
gi|284057151|gb|ADB68092.1| hypothetical protein LM5578_1342 [Listeria monocytogenes 08-5578]
gi|284060198|gb|ADB71137.1| hypothetical protein LM5923_1295 [Listeria monocytogenes 08-5923]
Length = 762
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 121/464 (26%), Positives = 211/464 (45%), Gaps = 60/464 (12%)
Query: 304 ASRFSDAYNKAM-FSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSM 362
A RF D ++ + FS KG + Y D+K W K D + + + + + M
Sbjct: 318 AERFRDKFHDIVRFSYINKGFYYY--DSKVW-KYD---------NIGAVKTLVDDVIKDM 365
Query: 363 KEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLL 422
K SE +N++ F + R N + + K EA + + +
Sbjct: 366 K------SEFAYMDNESDAEKAFMKHLKATRSNKGKTNMLK------EAQHLMPVLPEEF 413
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPF---VEGEPSQEFL-DLVSGYFE 478
D FL Q+G ++L+ G+ + ++ TK + + ++ Q FL D+ +G
Sbjct: 414 DRYKYFLNTQNGYINLQNGELINHDRQKMFTKISNIEYTDKIDAPLWQAFLNDIFAG--- 470
Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538
+E+++Y + VG +L G Q + G G +GKS +++I FG+ Y N + I
Sbjct: 471 DKELINYIQKAVGYSLSGSTSEQVMFILFGNGRNGKSVFLDIINDIFGS-YATNIQPQTI 529
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598
M + ++ AN + RL G+R V +E NE ++ +KQ+TGGD +TAR Y + +
Sbjct: 530 MVKQ--QSSNANSDIARLHGARFVTTTEPNEGVRLDEGLVKQLTGGDKVTARHLYKDEFE 587
Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAK 656
+P F ++ N +R DD WRR ++PF I + D KL ++ T
Sbjct: 588 FTP-EFKIWMATNHKPIIRGRDDGIWRRLHLVPFTVKIPDEKVDKQLKYKLRSELT-GIL 645
Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAK 716
W ++G + +GL +P+ A E + D A+I+DCC+ GEN + +L +
Sbjct: 646 NWAVEGFLKWQKEGL--GMPKAVENASSEYKSEMDVITAFIEDCCETGENKQINAKTLYE 703
Query: 717 SYSEY---------------REQELNYDRKRISTRT----VTLN 741
+Y E+ +E L +++KR + +T +TLN
Sbjct: 704 TYREWARDNGQYLMSSTKFGKEMGLKFEKKRSNGQTAYKCITLN 747
>gi|224501854|ref|ZP_03670161.1| hypothetical protein LmonFR_04967 [Listeria monocytogenes FSL
R2-561]
Length = 757
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 116/432 (26%), Positives = 195/432 (45%), Gaps = 48/432 (11%)
Query: 304 ASRFSDAYNKAM-FSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSM 362
A RF D ++ + FS KG + Y D+K W K D + + + + + M
Sbjct: 318 AERFRDKFHDIVRFSYINKGFYYY--DSKVW-KYD---------NIGAVKTLVDDVIKDM 365
Query: 363 KEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLL 422
K SE +N++ F + R N + + K EA + + D
Sbjct: 366 K------SEFAYMDNESDAEKAFMKHLKATRSNKGKTNMLK------EAQHLMPVLPDEF 413
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPF---VEGEPSQEFL-DLVSGYFE 478
D FL Q+G ++L+ G+ + ++ TK + + ++ Q FL D+ +G
Sbjct: 414 DRYKYFLNTQNGYINLQNGELINHDRQKMFTKISNIEYTDKIDAPLWQAFLKDIFAG--- 470
Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538
+E++DY + VG +L G Q + G G +GKS +++I FG+ Y N + I
Sbjct: 471 DKELIDYIQKAVGYSLSGSTSEQVMFILFGNGRNGKSVFLDIINDIFGS-YATNIQPQTI 529
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598
M + ++ AN + RL G+R V +E NE ++ +KQ+TGGD +TAR Y + +
Sbjct: 530 MVKQ--QSSNANSDIARLHGARFVTTTEPNEGVRLDEGLVKQLTGGDKVTARHLYKDEFE 587
Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAK 656
+P F ++ N +R DD WRR ++PF I + D KL ++ T
Sbjct: 588 FTP-EFKIWMATNHKPIIRGRDDGIWRRLHLVPFTVKIPDEKVDKQLKYKLRSELT-GIL 645
Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGEN-------LWE 709
W ++G + +GL +P+ A E + D A+I+DCCD+ E ++E
Sbjct: 646 NWAVEGFLKWQKEGL--GMPKAVENASSEYKSEMDVITAFIEDCCDVREGEKVNAKKMYE 703
Query: 710 ESHSLAKSYSEY 721
H AK +Y
Sbjct: 704 TYHEWAKENGQY 715
>gi|217964665|ref|YP_002350343.1| phage/plasmid primase, P4 family [Listeria monocytogenes HCC23]
gi|217333935|gb|ACK39729.1| phage/plasmid primase, P4 family [Listeria monocytogenes HCC23]
gi|307570771|emb|CAR83950.1| bacteriophage primase [Listeria monocytogenes L99]
Length = 762
Score = 132 bits (333), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 119/464 (25%), Positives = 211/464 (45%), Gaps = 60/464 (12%)
Query: 304 ASRFSDAYNKAM-FSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSM 362
A RF D ++ + FS KG + Y D+K W +N+ +D + + + M
Sbjct: 318 AERFRDKFHDIVRFSYINKGFYYY--DSKVW---KYDNIGAVKTLVDDVIKDMKSEFAYM 372
Query: 363 KEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLL 422
+ + S+ + K+ K+ R S T EA + + +
Sbjct: 373 ESE----SDAEKAFMKHLKATR---------------SNKGKTNMLKEAQHLMPVLPEEF 413
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPF---VEGEPSQEFL-DLVSGYFE 478
D FL Q+G ++L++G+ + ++ TK + + ++ + FL D+ +G
Sbjct: 414 DRYKYFLNTQNGYINLQSGELLDHDRQKMFTKISNIEYTDKIDAPLWENFLNDIFAG--- 470
Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538
+E++ Y + VG +L G Q + G G +GKS +++I FG+ Y N + I
Sbjct: 471 DQELIHYIQKAVGYSLSGSTSEQVMFILFGNGRNGKSVFLDIINDIFGS-YATNIQPQTI 529
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598
M + ++ AN + RL G+R V +E NE ++ +KQ+TGGD +TAR Y + +
Sbjct: 530 MVKQ--QSSNANSDIARLHGARFVTTTEPNEGVRLDEGLVKQLTGGDKVTARHLYKDEFE 587
Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAK 656
+P F ++ N +R DD WRR ++PF I + D KL ++ T
Sbjct: 588 FTP-EFKIWMATNHKPIIRGRDDGIWRRLHLVPFTVKIPDEKVDKQLKYKLRSELT-GIL 645
Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAK 716
W ++G + +GL +P+ KA E + D A+I+DCC+ GEN + +L +
Sbjct: 646 NWAVEGFLKWQREGL--GMPKAVEKASSEYKSEMDVITAFIEDCCETGENKQINAKTLYE 703
Query: 717 SYSEY---------------REQELNYDRKRISTRT----VTLN 741
+Y E+ +E L +++KR + +T +TLN
Sbjct: 704 TYREWARDNGQYLMSSTKFGKEMGLKFEKKRSNGQTAYKCITLN 747
>gi|217973530|ref|YP_002358281.1| P4 family phage/plasmid primase [Shewanella baltica OS223]
gi|217498665|gb|ACK46858.1| phage/plasmid primase, P4 family [Shewanella baltica OS223]
Length = 900
Score = 132 bits (331), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 105/411 (25%), Positives = 184/411 (44%), Gaps = 42/411 (10%)
Query: 396 VEENSKAKSTAQSLEAGSIFSI---------TSDLLD--------SSSRF------LGEQ 432
VEE+ K K + EAG + +D+L+ S+SRF +G
Sbjct: 492 VEESVKNKDKSMHEEAGQLLKFGRQTLNRKKMADMLEVFKSGNQISASRFDSDPMKMGIS 551
Query: 433 DGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY-FESEEVMDYFTRCVG 491
+G+LDL G+ + K +YI++ + + +L + +E + R VG
Sbjct: 552 NGVLDLTKGKLLAAKKRMYISRYSDITYDSSATCPRWLQFIDEITCGDKEYAKFLQRIVG 611
Query: 492 MALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANP 551
L G Q + G G +GKST MN+I+ G+ Y + +SD++ + NP
Sbjct: 612 YILTGRTDEQVLFFLHGHGCNGKSTFMNVIQRLMGSYY--HQISSDVLLQTNNSSKGPNP 669
Query: 552 SLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPN 611
SL +L GSR+V+ +E E ++ +K MTG D + AR Y E F +V N
Sbjct: 670 SLAKLTGSRLVVANELPEGSRMDENLVKSMTGNDVIVARQLYAKVELEYTPMFKLIMVGN 729
Query: 612 KHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAKKWFLKGVKAYISK 669
+R+ WRR I++PF+ + D KL + + W L+GV+ ++
Sbjct: 730 HKPVIRDTSPGMWRRMIMLPFNASFSQEQMDPLLMDKLYAELS-GILNWALEGVQMWLKD 788
Query: 670 GLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYD 729
G+ IP E R +D ++++C G+ + + L ++ ++ E++ ++
Sbjct: 789 GIKASIPNSIKSEIAEYRHESDLLAIFLEECTCKGDFTY--TDMLYDAFRKWAERDGDW- 845
Query: 730 RKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDD 780
+++ +T L +KGF G SK +IKG+ LK F+ + +
Sbjct: 846 --KMTRNIMTKRLVEKGFEKG--------RHNSKAMIKGINLKSVFDDISE 886
>gi|281419011|ref|ZP_06250029.1| phage/plasmid primase, P4 family [Clostridium thermocellum JW20]
gi|281407468|gb|EFB37728.1| phage/plasmid primase, P4 family [Clostridium thermocellum JW20]
Length = 719
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 112/412 (27%), Positives = 185/412 (44%), Gaps = 33/412 (8%)
Query: 350 KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSL 409
K T +M F + D+ + + ED + + + +N A +L
Sbjct: 312 KETGELMQFAIKTARDMLAEASQIEDEATRKE----LVHHAMQSENAGRLKAMIDVASNL 367
Query: 410 EAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ-- 467
E I D LDS L ++G++DL+TG+ + +E Y++K VE P
Sbjct: 368 EG---LIIMPDELDSDIWKLNCKNGVVDLKTGELLPHKREYYMSKICP---VEYSPESKA 421
Query: 468 ----EFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKY 523
EFL+ ++G S E++ Y + VG +L G Q + G G +GKST +N I
Sbjct: 422 PRWIEFLNTITG--GSNELVRYLQKAVGSSLSGDISEQALFVLYGTGANGKSTFLNTISD 479
Query: 524 AFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTG 583
G+ Y N + M R G + RL G+R+V E NE ++ A IK TG
Sbjct: 480 LLGD-YARNTPSETFMAKRIEAIGN---DIARLQGARLVTAIEINEGQRLSEALIKSFTG 535
Query: 584 GDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDA 641
GD +TAR YG + P FTPF+V N +R+ + WR +IPF I +D
Sbjct: 536 GDRITARFLYGEYFDFQP-QFTPFLVVNHRPVIRDTSHSIWRHIKLIPFTVTIPEDKKDK 594
Query: 642 SFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCC 701
KL + W ++G + +GL ++P+ +A E R+ DT+ ++I++CC
Sbjct: 595 QLPAKLREELP-GILSWAVEGCFLWQKEGL--EMPDEVKEATEGYREEMDTFSSFIEECC 651
Query: 702 DIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKR 753
+ E + S+ +Y + + +Y + + + ++GF +KR
Sbjct: 652 IVEEGRKVSNRSIRYAYETWCRENGDYP---LGQKLFNAKMTERGF--AVKR 698
>gi|312984184|ref|ZP_07791530.1| putative nucleoside triphosphatase, D5 family [Lactobacillus
crispatus CTV-05]
gi|310894403|gb|EFQ43479.1| putative nucleoside triphosphatase, D5 family [Lactobacillus
crispatus CTV-05]
Length = 774
Score = 130 bits (328), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 115/425 (27%), Positives = 184/425 (43%), Gaps = 33/425 (7%)
Query: 303 LASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLV-S 361
+A RF D Y K +FLY+ K WY N WS + + + ++ +
Sbjct: 330 MAQRFIDRYGK---------NFLYSYIDKEWYIY---NGSYWSPDIKGYIETASDHVIKN 377
Query: 362 MKED--VFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITS 419
+ +D D S +D K N+ + N E + KAK E +T
Sbjct: 378 LAKDRPAIDPSLPEKDQKK-------IINSWNKFVNHERSHKAKVDLIK-ELQHRLPVTH 429
Query: 420 DLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFES 479
+ D L G +DL G+ + T TG + + + + F++
Sbjct: 430 SMWDQEDMLLNTPSGYVDLTNGKLHPHDIKKMFTAETGAEYSDTIDCPNWCKFLKQIFQN 489
Query: 480 -EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538
EEV+ Y + +G + G K Q G G +GKS +++ ++ G Y S I
Sbjct: 490 DEEVIHYVQKAIGYSFTGSTKEQVMFIPYGNGRNGKSVMLDTVQDIAGG-YAKTMNVSSI 548
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598
M AN + RL GSR+VI SE NE ++ +KQ+TGGD + AR YG +
Sbjct: 549 MTKYNNNG--ANSDIARLEGSRMVISSEANEGQRLDEGLVKQLTGGDRIVARQMYGKEFE 606
Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAK 656
P S+ ++ N +R D+ WRR I+IPFD + D + KLET+ ++
Sbjct: 607 YQP-SYKIWMATNHKPLIRGTDEGIWRRLILIPFDYQVLKDKIDRNLKYKLETE-SMGIL 664
Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAK 716
W ++G + +GL+ PE KA ++ R+ D ++ DCC++G +S L
Sbjct: 665 NWIVEGAIMWQVEGLEA--PEQIKKASQKYREEMDVLSGFVADCCELGLGFTAKSGELYD 722
Query: 717 SYSEY 721
SY +
Sbjct: 723 SYKNW 727
>gi|48697531|ref|YP_024889.1| gp49 [Burkholderia phage BcepB1A]
gi|47717501|gb|AAT37747.1| gp49 [Burkholderia phage BcepB1A]
Length = 919
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 118/492 (23%), Positives = 214/492 (43%), Gaps = 58/492 (11%)
Query: 305 SRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKE 364
SR D Y + +Y ++ + WY+ D + + T + FL + +
Sbjct: 465 SRLMDKYGDTL---------MYVSEIEQWYQWD-------GMRWNAATPEQLQFLAT--Q 506
Query: 365 DVFDLSEEPEDNNKNSKSPRF-WFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLD 423
++ +++E D R + D ++ + +N + A+ +F+ ++L D
Sbjct: 507 TIYSIAQEARDEENEEVRVRLAQWARDSQKTAMVKNIVIGARAEP----RVFARAANL-D 561
Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLV-SGYFESEEV 482
+ R++G + I+DL+TG + P + IT+ T + + F + +F++ E+
Sbjct: 562 ADVRYIGAPNCIIDLQTGAALAPDRNARITQYTAVQYNPAADAPCFKQTIREAFFDNIEL 621
Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA---SDIM 539
+ +F R +G ALLG K + G G +GKST+MN I+ G+ Y A + +
Sbjct: 622 IVFFKRLMGYALLGNPKQSWLVIPYGHGANGKSTIMNAIQRVLGD-YCRTASSDTFTSSE 680
Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599
+R AG L+RL +R+++ISE EN + A +K +TG D + AR E
Sbjct: 681 ASRSSSAGGPREDLVRLRSTRMLLISEVEENSHLREAIVKSLTGDDTIVARGVQAKASVE 740
Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAK--- 656
F P + N ++ D+ WRR ++IPF++ D + + ++ + A+
Sbjct: 741 YKPRFVPIMSTNHKPVIKGSDNGIWRRIMMIPFERNF-REDPNIPEDVDRPEKIAAESEG 799
Query: 657 --KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
+W ++G Y G V +P + +A +E R+ D WI+ + + + L
Sbjct: 800 VLRWLVEGAVEYQQFG--VTVPHIIREATDEYRKDMDLLSGWIESRLEFDPDAFVTPQDL 857
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLK---QKGF-----IGGIKREKIEKEWKSKRII 766
S+ Y R + V L K +KGF IGG++ R
Sbjct: 858 FTSWQSY---ATPIGLMRFVSTPVALGRKLAGRKGFKRAQNIGGMR----------GRCF 904
Query: 767 KGLKLKPAFESV 778
G++LK A E V
Sbjct: 905 VGVRLKTAAEVV 916
>gi|254933547|ref|ZP_05266906.1| primase [Listeria monocytogenes HPB2262]
gi|293585111|gb|EFF97143.1| primase [Listeria monocytogenes HPB2262]
Length = 757
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 113/428 (26%), Positives = 193/428 (45%), Gaps = 46/428 (10%)
Query: 304 ASRFSDAYNKAM-FSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSM 362
A RF D ++ + FS KG + Y D+K W +NV +D + + + M
Sbjct: 318 AERFRDKFHDIVRFSYINKGFYYY--DSKVW---KYDNVGAVKTLVDDVIKDMKSEFAYM 372
Query: 363 KEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLL 422
+N++ F + R N + + K EA + + +
Sbjct: 373 -------------DNESDAEKAFMKHLKATRSNKGKTNMLK------EAQHLMPVLPEEF 413
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPF---VEGEPSQEFL-DLVSGYFE 478
D FL Q+G ++L+ G+ + ++ TK + + ++ QEFL D+ +G
Sbjct: 414 DRYKYFLNTQNGYINLQNGELINHDRQKMFTKISNIEYTDKIDAPLWQEFLNDIFAG--- 470
Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538
+E+++Y + VG +L G Q + G G +GKS +++I FG+ Y N + I
Sbjct: 471 DKELINYIQKSVGYSLSGSTSEQVMFILFGNGRNGKSVFLDIINDIFGS-YATNIQPQTI 529
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598
M + ++ AN + RL G+R V +E NE ++ +KQ+TGGD +TAR Y + +
Sbjct: 530 MVKQ--QSSNANSDIARLHGARFVTTTEPNEGVRLDEGLVKQLTGGDKVTARHLYKDEFE 587
Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAK-- 656
+P F ++ N +R DD WRR ++PF I D ++L+ K E
Sbjct: 588 FTP-EFKIWMATNHKPIIRGRDDGIWRRLHLVPFTVKIP--DTKVDKQLKYKLRRELTGI 644
Query: 657 -KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLA 715
W ++G + +GL +P+ A E + D A+I+DCCD+ E E +
Sbjct: 645 LNWAVEGFLKWQREGLG--MPKAVENASSEYKSEMDVITAFIEDCCDVREG---EKVNAK 699
Query: 716 KSYSEYRE 723
K Y YR+
Sbjct: 700 KMYETYRD 707
>gi|262047907|ref|ZP_06020853.1| phage primase [Lactobacillus crispatus MV-3A-US]
gi|260571785|gb|EEX28360.1| phage primase [Lactobacillus crispatus MV-3A-US]
Length = 773
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 86/309 (27%), Positives = 149/309 (48%), Gaps = 10/309 (3%)
Query: 416 SITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSG 475
+I + D + L + G +DL G+ + ++ T + + + + D +
Sbjct: 424 TIDHGVFDHDNMLLNTESGYVDLTNGELKDHDIKKMFSEQTASEYSDNIDCPMWKDFLEQ 483
Query: 476 YFESEE-VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
F +E ++ Y + VG ++ G Q F + G G +GKS +N I+ G+ +
Sbjct: 484 IFNHDEKLIHYIQKAVGYSITGSTAEQVFFLLLGTGRNGKSVFINTIRNILGSYAKQMSV 543
Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
S I+ N +G AN + RL +R+V SE NE ++ + +KQ+TGGD + AR YG
Sbjct: 544 ESIIVHN---SSGSANSDIARLENTRLVTSSEANEGSRLDESLVKQLTGGDRILARFLYG 600
Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI-ANR-DASFAQKLETKYT 652
+ P F ++ N F+R D+ WRR V+PF+ I AN+ D + KL+ ++T
Sbjct: 601 QEFEYDP-KFKIWMATNHLPFIRGTDEGIWRRIKVVPFNVQIPANKVDKNLENKLKAEWT 659
Query: 653 LEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESH 712
W ++G + +GL PEV A ++ R+ D +A++D+CC G N
Sbjct: 660 -GILNWIVQGAIMWQVEGLKD--PEVVQDASKQYRENMDPLEAFLDECCKAGSNYTIMGR 716
Query: 713 SLAKSYSEY 721
L +Y ++
Sbjct: 717 PLYNAYRDW 725
>gi|296447833|ref|ZP_06889745.1| phage/plasmid primase, P4 family [Methylosinus trichosporium OB3b]
gi|296254633|gb|EFH01748.1| phage/plasmid primase, P4 family [Methylosinus trichosporium OB3b]
Length = 892
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 92/350 (26%), Positives = 157/350 (44%), Gaps = 16/350 (4%)
Query: 422 LDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEE 481
D + LG +G+LDL +G+ + + ++ ++K F F+ + +E
Sbjct: 551 FDDNPMMLGVANGVLDLRSGRLLPMSPDVLVSKRCNVAFDPDAECPSFIRFLVEVQPDDE 610
Query: 482 VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQN 541
+ R VG L G Q F G G +GKS + L+ + G+ Y + +MQ+
Sbjct: 611 IRACVKRFVGYCLTGDVSEQVFAFFHGGGNNGKSAFIELLAWLLGD-YALKIPTEMLMQH 669
Query: 542 -RPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600
R P+ +P ++ L G R++ +ET E + A++K +TGGD +T R +
Sbjct: 670 QRNPQG--PSPDIVALKGRRLIYANETEEGRRLADARVKDLTGGDTLTGRAPHAMAAICF 727
Query: 601 PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK--PIANRDASFAQKLETKYTLEAKKW 658
S IV N + + WRR ++P+ K P RD QKL + + W
Sbjct: 728 RPSHKLVIVGNHKPAISDTSSGMWRRVALVPWTKTVPPEKRDRHLVQKLMREGS-GVLNW 786
Query: 659 FLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSY 718
L G++ + GL IP+ A R+ D W+DD C+ G L+E+ +Y
Sbjct: 787 ALDGLRDWREHGL--MIPDAIKDATASYREDEDILGDWLDDECESGRGLFEKK---IHAY 841
Query: 719 SEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIE----KEWKSKR 764
+ YRE + + ++ +T T L ++GF G R + +W+S+R
Sbjct: 842 ASYREWAESNGNRPLANKTFTRRLTERGFPLGRDRRTFQGFALTDWRSRR 891
>gi|16801649|ref|NP_471917.1| hypothetical protein lin2587 [Listeria innocua Clip11262]
gi|16415124|emb|CAC97814.1| lin2587 [Listeria innocua Clip11262]
Length = 757
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 114/432 (26%), Positives = 195/432 (45%), Gaps = 48/432 (11%)
Query: 304 ASRFSDAYNKAM-FSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSM 362
A RF D ++ + FS KG + Y D+K W K D + + + + + M
Sbjct: 318 AERFRDKFHDIVRFSYINKGFYYY--DSKVW-KYD---------NIGAVKTLVDDVIKDM 365
Query: 363 KEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLL 422
K SE +N++ F + R N + + K EA + + +
Sbjct: 366 K------SEFAYMDNESDAEKAFMKHLKATRSNKGKTNMLK------EAQHLMPVLPEEF 413
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPF---VEGEPSQEFL-DLVSGYFE 478
D FL Q+G ++L+ G+ + ++ TK + + ++ Q FL D+ +G
Sbjct: 414 DRYKYFLNTQNGYINLQNGELINHDRQKMFTKISNIEYTDKIDAPLWQAFLNDIFAG--- 470
Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538
+E+++Y + VG +L G Q + G G +GKS +++I FG+ Y N + I
Sbjct: 471 DKELINYMQKAVGYSLSGSTSEQVMFILFGNGRNGKSVFLDIINDIFGS-YATNIQPQTI 529
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598
M + ++ AN + RL G+R V +E NE ++ +KQ+TGGD +TAR Y + +
Sbjct: 530 MVKQ--QSSNANSDIARLHGARFVTTTEPNEGVRLDEGLVKQLTGGDKVTARHLYKDEFE 587
Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAK 656
+P F ++ N +R DD WRR ++PF I + D KL ++ T
Sbjct: 588 FTP-EFKIWMATNHKPIIRGRDDGIWRRLHLVPFTVKIPDEKVDKQLKYKLRSELT-GIL 645
Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGEN-------LWE 709
W ++G + +GL +P+ A E + D A+I+DCCD+ E ++E
Sbjct: 646 NWAVEGFLKWQKEGL--GMPKAVENASSEYKSEMDVITAFIEDCCDVREGEKVNAKKMYE 703
Query: 710 ESHSLAKSYSEY 721
H AK +Y
Sbjct: 704 TYHEWAKENGQY 715
>gi|157325276|ref|YP_001468699.1| gp60 [Listeria phage B025]
gi|66733282|gb|AAY53099.1| gp60 [Listeria phage B025]
Length = 757
Score = 129 bits (323), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 114/432 (26%), Positives = 195/432 (45%), Gaps = 48/432 (11%)
Query: 304 ASRFSDAYNKAM-FSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSM 362
A RF D ++ + FS KG + Y D+K W K D + + + + + M
Sbjct: 318 AERFRDKFHDIVRFSYINKGFYYY--DSKVW-KYD---------NIGAVKTLVDDVIKDM 365
Query: 363 KEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLL 422
K SE +N++ F + R N + + K EA + + +
Sbjct: 366 K------SEFAYMDNESDAEKAFMKHLKATRSNKGKTNMLK------EAQHLMPVLPEEF 413
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPF---VEGEPSQEFL-DLVSGYFE 478
D FL Q+G ++L+ G+ + ++ TK + + ++ Q FL D+ +G
Sbjct: 414 DRYKYFLNTQNGYINLQNGELINHDRQKMFTKISNIEYTDKIDAPLWQAFLNDIFAG--- 470
Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538
+E+++Y + VG +L G Q + G G +GKS +++I FG+ Y N + I
Sbjct: 471 DKELINYMQKAVGYSLSGSTSEQVMFILFGNGRNGKSVFLDIINDIFGS-YATNIQPQTI 529
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598
M + ++ AN + RL G+R V +E NE ++ +KQ+TGGD +TAR Y + +
Sbjct: 530 MVKQ--QSSNANSDIARLHGARFVTTTEPNEGVRLDEGLVKQLTGGDKVTARHLYKDEFE 587
Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAK 656
+P F ++ N +R DD WRR ++PF I + D KL ++ T
Sbjct: 588 FTP-EFKIWMATNHKPIIRGRDDGIWRRLHLVPFTVKIPDEKVDKQLKYKLRSELT-GIL 645
Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGEN-------LWE 709
W ++G + +GL +P+ A E + D A+I+DCCD+ E ++E
Sbjct: 646 NWAVEGFLKWQREGL--GMPKAVENASSEYKSEMDVITAFIEDCCDVREGEKVNAKKMYE 703
Query: 710 ESHSLAKSYSEY 721
H AK +Y
Sbjct: 704 TYHEWAKENGQY 715
>gi|300766173|ref|ZP_07076138.1| phage/plasmid primase P4 [Listeria monocytogenes FSL N1-017]
gi|300513131|gb|EFK40213.1| phage/plasmid primase P4 [Listeria monocytogenes FSL N1-017]
Length = 757
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 95/348 (27%), Positives = 167/348 (47%), Gaps = 31/348 (8%)
Query: 410 EAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPF---VEGEPS 466
EA + + + D FL Q+G ++L++G+ + ++ TK + + ++
Sbjct: 401 EAQHLMPVLPEEFDRYKYFLNTQNGYINLQSGELLDHDRQKMFTKISNIEYTDKIDAPLW 460
Query: 467 QEFL-DLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF 525
+ FL D+ +G +E++ Y + VG +L G Q + G G +GKS +++I F
Sbjct: 461 ENFLNDIFAG---DQELIHYIQKAVGYSLSGSTSEQVMFILFGNGRNGKSVFLDIINDIF 517
Query: 526 GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGD 585
G+ Y N + IM + ++ AN + RL G+R V +E NE ++ +KQ+TGGD
Sbjct: 518 GS-YATNIQPQTIMVKQ--QSSNANSDIARLHGARFVTTTEPNEGVRLDEGLVKQLTGGD 574
Query: 586 CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASF 643
+TAR Y + + +P F ++ N +R DD WRR ++PF I + D
Sbjct: 575 KVTARHLYKDEFEFTP-EFKIWMATNHKPIIRGRDDGIWRRLHLVPFTVKIPDEKVDKQL 633
Query: 644 AQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDI 703
KL ++ T W ++G + +GL +P+ A E + D A+I+DCCD+
Sbjct: 634 KYKLRSELT-GILNWAVEGFLKWQREGL--GMPKSVENASSEYKSEMDVITAFIEDCCDV 690
Query: 704 GEN-------LWEESHSLAKSYSEY--------REQELNYDRKRISTR 736
GE L+E AK +Y +E L +++K+ ++R
Sbjct: 691 GEKQEVDVKVLYETYREWAKDNGQYLMSNTKFGKELGLKFEKKKTNSR 738
>gi|41179390|ref|NP_958698.1| Bbp29 [Bordetella phage BPP-1]
gi|45569522|ref|NP_996591.1| primase [Bordetella phage BMP-1]
gi|45580773|ref|NP_996639.1| primase [Bordetella phage BIP-1]
gi|40950129|gb|AAR97695.1| Bbp29 [Bordetella phage BPP-1]
Length = 854
Score = 128 bits (322), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 81/286 (28%), Positives = 131/286 (45%), Gaps = 23/286 (8%)
Query: 6 WKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPL 65
++ + + NG+ +IP++ G KRP L W+ L + + + P G G +CG G QP+
Sbjct: 5 FQTHGRALLGNGYLIIPIKPGHKRPA-LDNWQTARLGAADLTRYPEHGVGVLCGQGAQPV 63
Query: 66 YAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTT--ESTQ 123
A D+D+ D + A F + G R+G PKIL+ +R EG K E
Sbjct: 64 VAIDVDTTDAELAARFVAWCQEHLGATCERVGNAPKILLAYRAESEGWGKATGAWFEDLA 123
Query: 124 G---HLDILGCGQYFVAYNIHPKTKKEYTWT---TPPHRFKVEDTPLLSEEDVEYLFKFF 177
G L++LG GQ FVAY++HP T + Y WT + D P+++E VE + F
Sbjct: 124 GDRHRLEVLGKGQQFVAYHVHPDTGRPYEWTDFFGGLDAMRASDLPVITEAQVEEALQVF 183
Query: 178 QEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFY----------NGSHD 227
+ + + + S+T + + + A+ G + N +D
Sbjct: 184 EAMAEECGLARVTGSKSRTGLTSAPE---DDPLMAYEPPVGIDLAEARRLVAYVDNEDYD 240
Query: 228 EWIPVVMAVHHETRGSSKGKEIARRWSKQGSTY-DEENFNYKWDTF 272
W+ V M++HHE GS + + WS S Y E+ +WD+F
Sbjct: 241 TWLKVGMSLHHEFDGSGEALALWDEWSATASNYASSEDVARRWDSF 286
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 85/315 (26%), Positives = 145/315 (46%), Gaps = 17/315 (5%)
Query: 422 LDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSG-YFESE 480
LD + LG +G++DL TG+ + P + +T T T + F V+ +F
Sbjct: 500 LDKAPHLLGVGNGVVDLTTGKLLPPDQAYRVTTITATEYDAAATCPLFEQTVADVFFGDA 559
Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY-VINAEASDIM 539
+++ +F R +G +L+ G G +GKST++ I+ G + +A+
Sbjct: 560 DMIGFFQRLIGYSLMAQPTEDVLAIPYGSGSNGKSTVLGAIRDVLGEHAKMASADTFLSS 619
Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599
AG A ++RL G+R V +SE +E E+ IK MTGG+ + AR Y T E
Sbjct: 620 GAAGATAGSAREDVLRLRGARFVYVSEPDEGSELREGLIKSMTGGEPLPARGLYSKTTVE 679
Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAK--- 656
++ F+ N V+ D A WRR + +PF + ++D + + + L A+
Sbjct: 680 VAPTWVAFMPTNHRPIVKGDDHAIWRRLLPVPFTRNF-DQDLTLTKDPDRAEKLAAEAAG 738
Query: 657 --KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIG-------ENL 707
W ++G AY +GL P +A+++ + D W+D+CC++G L
Sbjct: 739 ILAWCVRGALAYQRQGLRP--PGAVRQARDDYKSDMDLLAEWLDECCEVGPAYVESNARL 796
Query: 708 WEESHSLAKSYSEYR 722
W + AK+ E R
Sbjct: 797 WASWEAFAKARGELR 811
>gi|17488555|ref|NP_511033.1| primase [Listeria phage 2389]
gi|17402460|emb|CAC85608.1| primase [Listeria phage PSA]
gi|332311652|gb|EGJ24747.1| Primase [Listeria monocytogenes str. Scott A]
Length = 757
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 115/432 (26%), Positives = 193/432 (44%), Gaps = 48/432 (11%)
Query: 304 ASRFSDAYNKAM-FSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSM 362
A RF D ++ + FS KG + Y D+K W K D + + + + + M
Sbjct: 318 AERFRDKFHDIVRFSYINKGFYYY--DSKVW-KYD---------NIGAVKTLVDDVIKDM 365
Query: 363 KEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLL 422
K SE +N++ F + R N + + K EA + + +
Sbjct: 366 K------SEFAYMDNESDAEKAFMKHLKATRSNKGKTNMLK------EAQHLMPVLPEEF 413
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPF---VEGEPSQEFL-DLVSGYFE 478
D FL Q+G ++L+ G+ + ++ TK + + ++ QEFL D+ +G
Sbjct: 414 DRYKYFLNTQNGYINLQNGELINHDRQKMFTKISNIEYTDKIDAPLWQEFLKDIFAG--- 470
Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538
+E+++Y + VG +L G Q + G G +GKS +++I FG+ Y N + I
Sbjct: 471 DKELINYIQKAVGYSLSGSTSEQVMFILFGNGRNGKSVFLDIINDIFGS-YATNIQPQTI 529
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598
M + ++ AN + RL G+R V +E NE ++ +KQ+TGGD +TAR Y +
Sbjct: 530 MVKQ--QSSNANSDIARLHGARFVTTTEPNEGVRLDEGLVKQLTGGDKVTARHLYKAEFE 587
Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAK 656
+P F ++ N +R DD WRR ++PF I + D KL + T
Sbjct: 588 FTP-EFKIWMATNHKPIIRGRDDGIWRRLHLVPFTVKIPDEKVDKQLKYKLRRELT-GIL 645
Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGEN-------LWE 709
W ++G + +GL +P A E + D A+I+DCCD+ E ++E
Sbjct: 646 NWAVEGFLKWQREGL--GMPGAVENASSEYKSEMDVITAFIEDCCDVREGEKVNAKKMYE 703
Query: 710 ESHSLAKSYSEY 721
H AK +Y
Sbjct: 704 TYHEWAKENGQY 715
>gi|332523756|ref|ZP_08400008.1| phage/plasmid primase, P4 family, C-terminal domain protein
[Streptococcus porcinus str. Jelinkova 176]
gi|332315020|gb|EGJ28005.1| phage/plasmid primase, P4 family, C-terminal domain protein
[Streptococcus porcinus str. Jelinkova 176]
Length = 761
Score = 128 bits (321), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 115/388 (29%), Positives = 166/388 (42%), Gaps = 42/388 (10%)
Query: 411 AGSIFSITSDLLDSSSRFLGEQDGILDLETG----QKVKPTKELYITKSTGTPFVEGEPS 466
A + S+ LDS L + DL G Q+ P E YITK T PS
Sbjct: 404 AKPMLSVELSELDSDDLLLNTPEATYDLRKGINGQQEHNP--EDYITKITAV-----SPS 456
Query: 467 QEFLDL----VSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLI 521
+ + L ++ +F +E++DY +GMA +G + I G G +GKST N I
Sbjct: 457 DQGMGLWQETLATFFCNDQELIDYVQEIIGMAAIGKVYQEHMIIAYGGGANGKSTFWNTI 516
Query: 522 KYAFGN-QYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQ 580
G+ ++A+A + R +P L L G R+VI SE E +N A +KQ
Sbjct: 517 ARVLGSYSGKLSADALTMSNKR-----NVSPELAELKGKRLVIASEMAEGMRLNTAVVKQ 571
Query: 581 MTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD 640
+T D + A Y + + P S T + N V DD WRR +VIPF+ I R
Sbjct: 572 ITSTDEIQAEKKYKDPFHFVP-SHTLVLYTNHLPKVGANDDGTWRRLVVIPFNAKITGRS 630
Query: 641 --ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID 698
+FA L W ++G + I +P + + R+ D ++
Sbjct: 631 DIKNFADYLYDNAAPAIMSWIIEGAEKAIKANFKTKVPTAVSASVKAYREANDWLGHFLS 690
Query: 699 DCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEK 758
DCC +G+ L E+S L Y Y + + Y R ST L Q GF KR++ K
Sbjct: 691 DCCQVGDQLTEKSGELYSQYRAYCAKNMEYTR---STTDFYSALDQAGF----KRKRTSK 743
Query: 759 EWKSKRIIKGLKLKPAFESVDDNSNIID 786
+I GLKL VDD + ID
Sbjct: 744 ----GNLILGLKL------VDDGYDFID 761
>gi|227534633|ref|ZP_03964682.1| primase [Lactobacillus paracasei subsp. paracasei ATCC 25302]
gi|227187734|gb|EEI67801.1| primase [Lactobacillus paracasei subsp. paracasei ATCC 25302]
Length = 765
Score = 128 bits (321), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 86/319 (26%), Positives = 154/319 (48%), Gaps = 10/319 (3%)
Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY 476
+T+D D+ + +G +DL G + + +K + + + E+ ++
Sbjct: 417 VTTDEFDADQTLMNVDNGYIDLSDGTLHEHDIKKMFSKKSNVEYSDTVECPEWQAFLNQT 476
Query: 477 FESE-EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535
F + E++DY + VG +L G + Q + G G +GKS M+ +K+ G+ Y +A
Sbjct: 477 FNGDNELIDYIQKAVGYSLTGSVEEQVMFILYGSGRNGKSVFMDTLKHIAGS-YSRTMQA 535
Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595
IM + +G AN + RL G+R+V SE NE ++ IK++TGG+ +TAR YG+
Sbjct: 536 KSIMVQQ--SSGGANSDIARLKGARLVSASEPNEGVRLDEGLIKELTGGESVTARFLYGS 593
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK--PIANRDASFAQKLETKYTL 653
+ P F ++ N +R DD WRR ++IPF P+ D KLE + ++
Sbjct: 594 EFEFKP-EFKLWLSTNHKPIIRGTDDGIWRRLMLIPFTHQVPVDQVDKRLTYKLE-RESI 651
Query: 654 EAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHS 713
W + G + +GL+ P+ A E R D + +I+DCC+ G +
Sbjct: 652 GILNWAVDGALKWQREGLEP--PQSVKDASNEYRTEMDVLELFINDCCEKGPGYQAAAGQ 709
Query: 714 LAKSYSEYREQELNYDRKR 732
L ++Y ++ ++ Y ++
Sbjct: 710 LYQTYVDWCDKSGEYKMRK 728
>gi|319757798|gb|ADV69740.1| Phage DNA polymerase [Streptococcus suis JS14]
Length = 761
Score = 127 bits (319), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 114/388 (29%), Positives = 166/388 (42%), Gaps = 42/388 (10%)
Query: 411 AGSIFSITSDLLDSSSRFLGEQDGILDLETG----QKVKPTKELYITKSTGTPFVEGEPS 466
A + S+ LDS L + DL G Q+ P E YITK T PS
Sbjct: 404 AKPMLSVELSELDSDDLLLNTPEATYDLRKGINGQQEHNP--EDYITKITAV-----SPS 456
Query: 467 QEFLDL----VSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLI 521
+ + L ++ +F +E++DY +GMA +G + I G G +GKST N I
Sbjct: 457 DQGMGLWQETLATFFCNDQELIDYVQEIIGMAAIGKVYQEHMIIAYGGGANGKSTFWNTI 516
Query: 522 KYAFGN-QYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQ 580
G+ ++A+A + R +P L L G R+VI SE E +N A +KQ
Sbjct: 517 ARVLGSYSGKLSADALTMSNKR-----NVSPELAELKGKRLVIASEMAEGMRLNTAVVKQ 571
Query: 581 MTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD 640
+T D + A Y + + P S T + N V DD WRR +VIPF+ I R
Sbjct: 572 ITSTDEIQAEKKYKDPFHFVP-SHTLVLYTNHLPKVGANDDGTWRRLVVIPFNAKITGRS 630
Query: 641 --ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID 698
+FA L W ++G + I +P + + R+ D ++
Sbjct: 631 DIKNFADHLYDNAAPAILSWIIEGAEKAIKANFKTKVPTAVSSSVKAYREANDWLGHFLS 690
Query: 699 DCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEK 758
DCC +G+ L E+S L Y Y + + Y R ST L Q GF KR++ K
Sbjct: 691 DCCQVGDQLTEKSGELYSQYRAYCAKNMEYTR---STTDFYSALDQAGF----KRKRTSK 743
Query: 759 EWKSKRIIKGLKLKPAFESVDDNSNIID 786
+I GLKL VDD + +D
Sbjct: 744 ----GNLILGLKL------VDDGYDFLD 761
>gi|315121956|ref|YP_004062445.1| P4 family phage/plasmid primase [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|315122924|ref|YP_004063413.1| P4 family phage/plasmid primase [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495358|gb|ADR51957.1| P4 family phage/plasmid primase [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313496326|gb|ADR52925.1| P4 family phage/plasmid primase [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 68
Score = 126 bits (317), Expect = 1e-26, Method: Composition-based stats.
Identities = 56/68 (82%), Positives = 60/68 (88%)
Query: 1 MPVMQWKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGV 60
M VMQWK QAKQAI NGFK+IPLR GDKRP R GKWEEQLLS+E IDKLP+CGFG VCGV
Sbjct: 1 MSVMQWKPQAKQAIKNGFKIIPLRHGDKRPLRAGKWEEQLLSNEDIDKLPSCGFGLVCGV 60
Query: 61 GEQPLYAF 68
GEQP+YAF
Sbjct: 61 GEQPIYAF 68
>gi|50914497|ref|YP_060469.1| Phage DNA polymerase [Streptococcus pyogenes MGAS10394]
gi|40218553|gb|AAR83207.1| hypothetical phage protein [Streptococcus pyogenes]
gi|50261598|gb|AAT72366.1| ATPase [Streptococcus pyogenes]
gi|50903571|gb|AAT87286.1| Phage DNA polymerase [Streptococcus pyogenes MGAS10394]
Length = 761
Score = 126 bits (316), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 114/388 (29%), Positives = 167/388 (43%), Gaps = 42/388 (10%)
Query: 411 AGSIFSITSDLLDSSSRFLGEQDGILDLETG----QKVKPTKELYITKSTGTPFVEGEPS 466
A I S+ LDS L + DL G Q+ P E YITK T PS
Sbjct: 404 AKPILSVELSELDSDDLLLNTPEATYDLRKGINGQQEHNP--EDYITKITAV-----SPS 456
Query: 467 QEFLDL----VSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLI 521
+ + L ++ +F +E++DY +GMA +G + I G G +GKST N I
Sbjct: 457 DQGMGLWQETLATFFCNDQELIDYVQEIIGMAAIGKVYQEHMIIAYGGGANGKSTFWNTI 516
Query: 522 KYAFGN-QYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQ 580
G+ ++A+A + R +P L L G R+VI SE E +N A +KQ
Sbjct: 517 ARVLGSYSGKLSADALTMSNKR-----NVSPELAELKGKRLVIASEMAEGMRLNTAVVKQ 571
Query: 581 MTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD 640
+T D + A Y + + P S T + N V DD WRR +VIPF+ I R
Sbjct: 572 ITSTDEIQAEKKYKDPFHFVP-SHTLVLYTNHLPKVGANDDGTWRRLVVIPFNAKITGRS 630
Query: 641 --ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID 698
+FA L W ++G + I ++P + + R+ D ++
Sbjct: 631 DIKNFADHLYDNAAPAIMSWIIEGAEKAIKANFKTNVPTAVSSSVKAYREANDWLGHFLG 690
Query: 699 DCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEK 758
DCC +G+ L E+S L Y Y + + Y R ST L+Q GF KR++ K
Sbjct: 691 DCCQVGDQLSEKSGELYSQYRAYCAKNMEYTR---STTDFYSALEQAGF----KRKRTSK 743
Query: 759 EWKSKRIIKGLKLKPAFESVDDNSNIID 786
I GLKL V+D + +D
Sbjct: 744 ----GNHILGLKL------VEDGYDFLD 761
>gi|48697236|ref|YP_024966.1| putative primase/helicase protein [Burkholderia phage BcepC6B]
gi|47779042|gb|AAT38405.1| putative primase/helicase protein [Burkholderia phage BcepC6B]
Length = 888
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 91/312 (29%), Positives = 142/312 (45%), Gaps = 13/312 (4%)
Query: 422 LDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESE- 480
LD + LG +G +DL TG + P KE IT T + + F V F +
Sbjct: 528 LDKHTHLLGVGNGAVDLRTGALLPPGKEHRITVVTPVEYDPRAAGKLFEQTVRDVFSDDA 587
Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540
E +++F R VG ALLG + I G G +GKST++ I+ A G + +A A +
Sbjct: 588 EQVEFFQRLVGYALLGTPREDLLIIPHGTGSNGKSTVLGKIREALG-AHAKSASAETFLS 646
Query: 541 NRPPEAGKA---NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
A L+RL G+R V + E +E E+ IK MTGGD + AR + T
Sbjct: 647 ASGGPGAAAGAAREDLLRLRGARFVYVGEPDEGSELREGLIKAMTGGDPIPARGLWSKTT 706
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK-----PIANRDASFAQKLETKYT 652
E ++ F+ N V+ D A WRR +++PF++ P +D + A++L +
Sbjct: 707 IEVVPTWVAFMPTNHKPIVKGDDHAIWRRLMLVPFERNFDKDPTIKKDPARAERLAAELP 766
Query: 653 LEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESH 712
W ++G AY GL A++ + D WID+ C +G + +
Sbjct: 767 -GVLAWCVRGALAYQQHGLRPT--SSVAAARDAYKADMDLLADWIDERCRVGRDAASTNE 823
Query: 713 SLAKSYSEYREQ 724
L +S+ + EQ
Sbjct: 824 DLWRSWRAFAEQ 835
>gi|118579792|ref|YP_901042.1| P4 family phage/plasmid primase [Pelobacter propionicus DSM 2379]
gi|118502502|gb|ABK98984.1| phage/plasmid primase, P4 family [Pelobacter propionicus DSM 2379]
Length = 524
Score = 125 bits (313), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 97/351 (27%), Positives = 161/351 (45%), Gaps = 29/351 (8%)
Query: 387 FNTDYRRQNVEENSKAKSTAQSLEAGSI--------FSITSDLLDSSSRFLGEQDGILDL 438
+N+D+ + E + K A +A + S+ S LD L +G +DL
Sbjct: 132 YNSDFLVRTEELKALLKLEAHPRQATLLEACKQRPELSVASAELDRHPMLLTVLNGTIDL 191
Query: 439 ETGQKVKPTKELYITKSTGTPFVEGEPSQE---FLDLVSGYFESE-EVMDYFTRCVGMAL 494
E+G + ++T+ F+E +P+ E FL + F S+ E++ Y R G L
Sbjct: 192 ESGALLPHDPANFLTRLV---FIEYDPTAECPKFLAFLDRIFASDKEIISYIQRFAGYCL 248
Query: 495 LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM--QNRPPEAGKANPS 552
G Q + G+G +GKS L N+ + G+ Y A A +M R P A
Sbjct: 249 TGLTGEQVLLFFYGLGANGKSVLANVFRALCGD-YASTAGAELLMVRDRRSPTNDLAG-- 305
Query: 553 LIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612
L GSR+V++SE ++ + + A+IKQ+TG D ++ R YG +S P F P ++ N
Sbjct: 306 ---LRGSRLVVVSEFDDGERLAEAQIKQLTGEDAISCRFLYGEFFSYVP-QFKPLLIGNH 361
Query: 613 HLFVRNPDDAWWRRYIVIPFDK--PIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKG 670
+R D WRR+ ++ F+ P RD +KL + W ++G + +G
Sbjct: 362 RPKIRGTDHGIWRRFHLVSFNVVIPPEERDPHLQKKLLQELP-GILAWAVRGCLDWQRQG 420
Query: 671 LDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEY 721
L+ PE A E RQ D + WI + C + + +L +S++E+
Sbjct: 421 LNP--PESVKAAVTEYRQAEDVFGQWIAEYCHRDVGMTAPAAALLRSFAEF 469
>gi|260161779|emb|CAZ39323.1| phage DNA polymerase [Streptococcus suis]
gi|313575361|emb|CBR26890.1| hypothetical protein [Streptococcus phage phi-SsUD.1]
Length = 761
Score = 124 bits (312), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 113/388 (29%), Positives = 166/388 (42%), Gaps = 42/388 (10%)
Query: 411 AGSIFSITSDLLDSSSRFLGEQDGILDLETG----QKVKPTKELYITKSTGTPFVEGEPS 466
A + S+ LDS L + DL G Q+ P E YITK T PS
Sbjct: 404 AKPMLSVELSELDSDDLLLNTPEATYDLRKGINGQQEHNP--EDYITKITAV-----SPS 456
Query: 467 QEFLDL----VSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLI 521
+ + L ++ +F +E++DY +GMA +G + I G G +GKST N I
Sbjct: 457 DQGMGLWQETLATFFCNDQELIDYVQEIIGMAAIGKVYQEHMIIAYGGGANGKSTFWNTI 516
Query: 522 KYAFGN-QYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQ 580
G+ ++A+A + R +P L L G R+VI SE E +N A +KQ
Sbjct: 517 ARVLGSYSGKLSADALTMSNKR-----NVSPELAELKGKRLVIASEMAEGMRLNTAVVKQ 571
Query: 581 MTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD 640
+T D + A Y + + P S T + N V DD WRR +VIPF+ I R
Sbjct: 572 ITSTDEIQAEKKYKDPFHFVP-SHTLVLYTNHLPKVGANDDGTWRRLVVIPFNAKIIGRS 630
Query: 641 --ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID 698
+FA L W ++G + I +P + + R+ D ++
Sbjct: 631 DIKNFADYLYDNAAPAIMSWIIEGAEKAIKANFKTKVPTAVSASVKAYREANDWLGHFLS 690
Query: 699 DCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEK 758
DCC +G+ L E+S L Y Y + + Y R ST L+Q GF KR++ K
Sbjct: 691 DCCQVGDQLTEKSGELYSQYRAYCTKNMEYTR---STTDFYSALEQAGF----KRKRTSK 743
Query: 759 EWKSKRIIKGLKLKPAFESVDDNSNIID 786
I GLKL V+D + +D
Sbjct: 744 ----GNFILGLKL------VEDGYDFLD 761
>gi|189426164|ref|YP_001953341.1| P4 family phage/plasmid primase [Geobacter lovleyi SZ]
gi|189422423|gb|ACD96821.1| phage/plasmid primase, P4 family [Geobacter lovleyi SZ]
Length = 695
Score = 123 bits (309), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 133/549 (24%), Positives = 213/549 (38%), Gaps = 71/549 (12%)
Query: 227 DEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRST 286
+EWI V M +HHE GS +G + WS+ + + +E KW F GD + T
Sbjct: 175 EEWICVGMGLHHEFAGSEEGLALWEEWSRGSTKFKDEECPEKWAGF-----GDRVDQPVT 229
Query: 287 FTSLFYHHGKLIPKGLLASRFSD-AYNKAMFSIYKKGHFL---------------YTADT 330
++ YH K L A R S+ A K + + +F D
Sbjct: 230 AGTI-YHMAK-AAGWLPAERVSEEAALKLLTDMRVSSYFAAKFKDRLRFNPSLDWLVFDG 287
Query: 331 KAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTD 390
+ W Y + L ++ A I ++ D +S E +
Sbjct: 288 QRWNSNTPGGAYPF---LKELIAEIRAKASQIENDAERMSMLKESVKLEA---------- 334
Query: 391 YRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKEL 450
+ RQ + S AQ + FS++S LD L +G LDL TG + +
Sbjct: 335 HNRQ-----AMVISAAQKIPD---FSVSSCQLDRDPMLLNVLNGTLDLRTGSLKQHSPAD 386
Query: 451 YITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFT-RCVGMALLGGNKAQRFIHIRGV 509
+IT+ + + F +S + F R G L G Q + + G
Sbjct: 387 FITRLVPIEYNHTATAPVFEAFLSKIMAGNTALTAFIKRWAGYCLTGDTSEQVLLFLYGT 446
Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569
G +GKST +N++K G+ A D++ ++ +L + G+R+V ++E N+
Sbjct: 447 GRNGKSTFVNILKKLLGDFAATGA--GDLILHKGNGDLSTLSALAAMRGARLVNLNELND 504
Query: 570 NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIV 629
D +N A +K +TGGD + R + + PA F + N +R D WRR +
Sbjct: 505 GDRLNEAAVKNLTGGDLLACRFLHKEFFEYKPA-FKLLLFGNHKPSIRGTDHGIWRRLHL 563
Query: 630 IPFDKPI--ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGL------DVDIPEVCLK 681
+ F I A D QKLE + L G+ A+ +G + P +
Sbjct: 564 LKFGVTISDAECDPHLEQKLEKE---------LPGILAWAVQGCLEWQREKLSPPAEVKE 614
Query: 682 AKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLN 741
A E R D + W+DDCC + + L S+ +Y + K +S R +
Sbjct: 615 AVAEYRNSEDALKGWLDDCCQLAPQFRTPAGLLLNSFIQYS------NWKGLSARRFSSM 668
Query: 742 LKQKGFIGG 750
L GF G
Sbjct: 669 LTVAGFTKG 677
>gi|227431773|ref|ZP_03913800.1| DNA-polymerase or DNA-primase [Leuconostoc mesenteroides subsp.
cremoris ATCC 19254]
gi|227352456|gb|EEJ42655.1| DNA-polymerase or DNA-primase [Leuconostoc mesenteroides subsp.
cremoris ATCC 19254]
Length = 791
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 103/414 (24%), Positives = 182/414 (43%), Gaps = 23/414 (5%)
Query: 316 FSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPED 375
F Y +FLY T+ D +W ++ MN V ++ + + PE+
Sbjct: 342 FQYYYGDNFLYDTITRKSMYYDGQ---VWQEDNYRLLEKTMNKTVDRIKEEPEFTIAPEN 398
Query: 376 NNKNSKSP---RFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQ 432
++K+P + F R + +EN+ E ++ ++T+D D L
Sbjct: 399 MGDSNKTPDELKAAFKKKSRSHSAKENAIK-------ELRNLITVTTDDFDKELSVLNTP 451
Query: 433 DGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE-SEEVMDYFTRCVG 491
G+L+L +G + E TK T + + + + +L + F+ +EE++++ R +G
Sbjct: 452 SGVLELTSGAVKNSSHEDRFTKITNAEYNDKKAPERWLAFLEQTFKGNEELIEFTQRALG 511
Query: 492 MALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANP 551
A G + + G G +GKS MN I Y G+ Y IN + + +R +G +
Sbjct: 512 YAATGTMDEEVMFILHGNGKNGKSVFMNTIDYVLGD-YSINVDPETVFASRSRNSGGPSG 570
Query: 552 SLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPN 611
+ R+ G+R++++SE E + IK++T D +TAR + N P T F++ N
Sbjct: 571 DIARMKGARLMVLSEPEEGKPLAEGLIKKITSKDTITARKLHSNEIEFRPTG-TIFMMTN 629
Query: 612 KHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAK---KWFLKGVKAYIS 668
+ DD WRR I IPF + + + +KLE K EA W +G +
Sbjct: 630 HKPIINGTDDGIWRRLIFIPFRNQV--KTENMDKKLEDKLRTEADAILAWIQEGTMKWQR 687
Query: 669 KGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYR 722
GL+ P V L E R D Q++I++ D + E +A + ++
Sbjct: 688 DGLNP--PPVVLNETNEYRDEMDDVQSFIEEYFDYSTDERTEFKEIATRFDTWK 739
>gi|229008352|ref|ZP_04165829.1| hypothetical protein bmyco0002_51610 [Bacillus mycoides Rock1-4]
gi|228752920|gb|EEM02472.1| hypothetical protein bmyco0002_51610 [Bacillus mycoides Rock1-4]
Length = 784
Score = 120 bits (302), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 102/361 (28%), Positives = 173/361 (47%), Gaps = 37/361 (10%)
Query: 422 LDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFES-E 480
D ++GI+DL+TG+ + +EL +TK T F E E+L+ + F+ +
Sbjct: 419 FDRHKYLFNVENGIVDLKTGKLQQHDRELGLTKITNIAFDENTKCPEWLNFLDQIFQGDQ 478
Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540
E+++Y R +G +L G Q + + G G +GKST +N IK G +Y A++ ++
Sbjct: 479 ELVEYMQRLIGYSLTGEITEQIMVFLIGGGSNGKSTFINTIKDLMG-EYGKQAKSDTFIK 537
Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600
+ E G AN + RL+GSR V E+ E ++++ A +KQ+TGG+ + AR Y E
Sbjct: 538 KK--ETG-ANNDIARLVGSRFVSAIESEEGEQLSEAFVKQITGGEPVLARF-LRQEYFEF 593
Query: 601 PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFD--KPIANRDASFAQKLETKYTLEAK-- 656
F F N ++ D+ WRR ++PF+ P RD +KL K +LE
Sbjct: 594 IPEFKVFFTTNHKPVIKGVDEGIWRRIRLVPFNLQLPKEKRD----KKLPEKLSLEMPGI 649
Query: 657 -KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLA 715
W ++G + GL+ P + +KA + ++ D ++ +CC E++ E+ L
Sbjct: 650 LNWAIEGCLKWQQSGLND--PAIVMKATGDYKEEMDILGPFMFECCFKREDVQIEAKELY 707
Query: 716 KSYSEYREQELNYDRKRISTRTVTLNLKQKGFI-----GGIKREKIEKEWKSKRIIKGLK 770
+ Y+ + R LK + F G+KRE+ ++K IKG+
Sbjct: 708 EVYANW------------CFRNGEHQLKNRAFYRILESQGLKRERGN---RNKYFIKGVT 752
Query: 771 L 771
L
Sbjct: 753 L 753
>gi|300764697|ref|ZP_07074688.1| hypothetical protein LMHG_11071 [Listeria monocytogenes FSL N1-017]
gi|300514583|gb|EFK41639.1| hypothetical protein LMHG_11071 [Listeria monocytogenes FSL N1-017]
Length = 747
Score = 120 bits (300), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 120/392 (30%), Positives = 170/392 (43%), Gaps = 45/392 (11%)
Query: 399 NSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGT 458
+SK S+A + EA + I LLD + L DL TG+ E YITK T
Sbjct: 384 DSKYLSSALT-EAKPMLEIEQRLLDVNEFLLNTPTATFDLRTGKSQDHNSEDYITKQT-- 440
Query: 459 PFVEGEPS----QEFLDLVSGYFES-EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSG 513
E PS Q +LD ++ F +E++DY VG+A +G + I G G +G
Sbjct: 441 ---ECAPSDANQQIWLDALNTIFVGDQELIDYVQMIVGLAAIGKVYVEALIISYGEGRNG 497
Query: 514 KSTLMNLIKYAFGN-QYVINAE--ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN 570
KST N+I GN I+A+ S I +N PE +A G R++I +E E
Sbjct: 498 KSTFWNVISRVLGNYSGSISADILTSQIRRNVKPELAEAK-------GKRLLIAAELEEG 550
Query: 571 DEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVI 630
+N + IKQ+ D + A Y + + P + T + N V D WRR IVI
Sbjct: 551 MRLNTSNIKQLCSTDEIAAEKKYKDPFKYVP-THTLVLYTNHLPKVGAIDKGTWRRLIVI 609
Query: 631 PFDKPI-ANRDA-SFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQ 688
PF I N+D ++A L +W L G K I+ + +P+V A E +
Sbjct: 610 PFLATIDGNKDIKNYADYLFENAGGAILQWILDGAKKVIAADFHLTVPQVVANAISEYKT 669
Query: 689 GTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGF- 747
D ++D+CC+ + E+S L Y+EYR TRT F
Sbjct: 670 ANDWLGHFLDECCETAVDFEEKSGEL---YAEYRA---------FCTRTGEYIRSSADFY 717
Query: 748 ----IGGIKREKIEKEWKSKRIIKGLKLKPAF 775
GG KR + K K I GL+LK F
Sbjct: 718 TALEAGGFKRRRTNKGNK----IVGLQLKSEF 745
>gi|229008912|ref|ZP_04166266.1| hypothetical protein bmyco0002_56420 [Bacillus mycoides Rock1-4]
gi|228752349|gb|EEM02023.1| hypothetical protein bmyco0002_56420 [Bacillus mycoides Rock1-4]
Length = 796
Score = 119 bits (298), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 100/373 (26%), Positives = 170/373 (45%), Gaps = 29/373 (7%)
Query: 409 LEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE 468
L+ + S+ LDS S +G++DL+TG+ + ++L +TK + + +
Sbjct: 416 LDVRPMVSVKKKELDSHSFLFNCDNGVIDLKTGELLPHDRDLLLTKLSPIKYDKNAECPN 475
Query: 469 FLDLVSGYFES------EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIK 522
+ + F++ E++ Y + +G +L G K Q + G G +GKST +N+I+
Sbjct: 476 WKAFLKSIFKTPAGEADHELIHYLQKAIGYSLTGVTKEQVMFFLFGNGRNGKSTFINIIQ 535
Query: 523 YAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMT 582
G+ Y + ++ R N + RL G+R V E+ E +++ A +KQ+T
Sbjct: 536 DLLGD-YGRQTNSDTFLKKRNDSG--INNDVARLDGARFVSAVESEEGQQLSEALVKQIT 592
Query: 583 GGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRD 640
GG+ M+AR Y E F F N V+ D+ WRR ++IPF I N D
Sbjct: 593 GGEKMSARF-LRQEYFEFTPEFKVFFTTNHKPIVKGSDEGIWRRIMLIPFTVTIKKENID 651
Query: 641 ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDC 700
KL K +W ++G + ++GL PE A E R+ D +ID+
Sbjct: 652 YDLPDKL-AKEMPGILRWAVEGCMKWQAEGLRA--PEAVKAATAEYREDMDILAPFIDEN 708
Query: 701 CDIGENLWEESHSLAKSYSE--YREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEK 758
C + ++ E+ SL ++Y++ Y+ EL + R L+ +GF K EK
Sbjct: 709 CTVNSSVRIEAKSLYENYTKWCYQNNEL-----ELKNRAFYRQLEVRGF-------KKEK 756
Query: 759 EWKSKRIIKGLKL 771
+K I G+ L
Sbjct: 757 GTGNKNFILGITL 769
>gi|184154942|ref|YP_001843282.1| phage primase [Lactobacillus fermentum IFO 3956]
gi|183226286|dbj|BAG26802.1| phage primase [Lactobacillus fermentum IFO 3956]
gi|299782971|gb|ADJ40969.1| Phage primase [Lactobacillus fermentum CECT 5716]
Length = 769
Score = 119 bits (297), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 143/307 (46%), Gaps = 13/307 (4%)
Query: 422 LDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFES-E 480
D+ L + G +DL +G + ++ + T + + + E+ + F + E
Sbjct: 426 FDNDLMLLNTESGYVDLNSGLLKEHDRDKMFSHQTAAEYTDTIDAPEWDKFLHQIFNNDE 485
Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540
EV+ Y + VG + G K Q + + G G +GKS +N I G+ AE ++
Sbjct: 486 EVIHYIQKAVGYSATGSIKEQVMLLLYGNGRNGKSVFINTIADILGSY----AETMNVES 541
Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600
+ N + RL G+R+VI SE NE ++ +KQMTGGD M AR Y + + +
Sbjct: 542 IMVKHSSGVNSDIARLEGARLVISSEANEGSRLDEGLVKQMTGGDKMVARHLYASEFEFT 601
Query: 601 PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAK---K 657
P F ++ N +R DD WRR ++IPF I ++L+ K EA
Sbjct: 602 P-QFKLWMATNHKPIIRGTDDGIWRRIMLIPFLVQIPKDKVD--KELKYKLQREASGILN 658
Query: 658 WFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKS 717
W ++G + ++GL+ PE+ KA +E RQ D + +I + C+ G+ + L
Sbjct: 659 WIVQGAMMWQAEGLEP--PEIIKKASDEYRQEMDAIEFFISEKCERGDGYMAPAGELYDV 716
Query: 718 YSEYREQ 724
Y + ++
Sbjct: 717 YKRWSDE 723
>gi|268610656|ref|ZP_06144383.1| Phage DNA polymerase [Ruminococcus flavefaciens FD-1]
Length = 740
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 114/397 (28%), Positives = 172/397 (43%), Gaps = 33/397 (8%)
Query: 390 DYRRQNVEENSKAKSTAQSLEAGSIFSITS-DLLDSSSRFLGEQDGILDLETGQ---KVK 445
D R+ V + +S +L+A + + + LD + L G DL G K
Sbjct: 364 DVFRKFVMKYRNIRSLNNALDAAKPLVLHNPEQLDGNPMLLNTPGGTYDLAKGLDGWKAT 423
Query: 446 PTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEE-VMDYFTRCVGMALLGGNKAQRFI 504
+L +T P GE Q + D + +F ++ ++DY G+ L+G + I
Sbjct: 424 DPADLITKVTTVVP--NGEGQQLWADALQVFFCGDQSLIDYVQMICGLCLIGKVYTEAMI 481
Query: 505 HIRGVGGSGKSTLMNLIKYAFGN-QYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVI 563
G G +GKST N+I G+ I+A+A + R P + L G R++I
Sbjct: 482 IAYGDGRNGKSTFWNVIYKVLGSYSGNISADALTVNCKR-----NVKPEMAELKGKRLII 536
Query: 564 ISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAW 623
+E E +N + +KQ+ D + A + +S P S T + N V DD
Sbjct: 537 AAELQEGMRLNTSVVKQLCSTDPIFAEKKFKAPFSFEP-SHTLVLYTNHLPKVAASDDGT 595
Query: 624 WRRYIVIPFDKPIANRDASFAQKLETKYTLE-----AKKWFLKGVKAYISKGLDVDIPEV 678
WRR IVIPF I + S K T+Y ++ W ++G ++ VD P+
Sbjct: 596 WRRLIVIPFHAKI---EGSADIKNYTQYLIDNAGGSVLSWLIEGAMKVVAADFKVDRPQC 652
Query: 679 CLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738
L A R G D A+I+DCC+ + E+S L K Y EY + Y R ST
Sbjct: 653 VLDAIGAYRDGNDWLGAFINDCCETDASYQEKSGDLYKRYREYCSESGEYVR---STTDF 709
Query: 739 TLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAF 775
L+Q GF KR+K+ S + I GL LK F
Sbjct: 710 YTALEQAGF----KRKKM----NSGKYIVGLCLKFDF 738
>gi|77412077|ref|ZP_00788403.1| bacteriophage protein, putative [Streptococcus agalactiae CJB111]
gi|77161882|gb|EAO72867.1| bacteriophage protein, putative [Streptococcus agalactiae CJB111]
Length = 759
Score = 118 bits (295), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 104/364 (28%), Positives = 161/364 (44%), Gaps = 38/364 (10%)
Query: 422 LDSSSRFLGEQDGILDLETGQKVKPTKEL----YITKST-GTPFVEGEPS-QEFLDLVSG 475
LD + L + +DL G + +E Y+TK T +P +G+ QE L +
Sbjct: 414 LDKNELLLNTPEATIDLSQG--LSGIREHDSADYLTKMTNASPSDKGDGLWQE--TLATF 469
Query: 476 YFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN-QYVINAE 534
+ + ++++Y VGMA +G + I G G +GKST N I GN ++AE
Sbjct: 470 FCDDTDLINYVQEIVGMAAIGKVYQEHMIIAYGSGANGKSTFWNTIARVLGNYSGKLSAE 529
Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
A + R +P + L G R++I SE +E +N A +KQ+ D + A Y
Sbjct: 530 ALTMSVRR-----NVSPEMAELKGKRLIIASEMSEGMRLNTAMVKQLCSTDEILAEKKY- 583
Query: 595 NTYSESPASFTP---FIVPNKHL-FVRNPDDAWWRRYIVIPFDKPIANRD--ASFAQKLE 648
++P F P ++ HL V DD WRR IVIPF+ I R +FA L
Sbjct: 584 ----KAPFHFVPSHTLVLYTNHLPKVGANDDGIWRRLIVIPFNAKITGRSDIKNFADYLY 639
Query: 649 TKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLW 708
+ W ++G + I + +P+V + R+ D ++ DCC+IG++L
Sbjct: 640 NEAAPAIMSWIIEGAEKAIKANFKLILPQVVADSVSAYREANDWMGQFLGDCCEIGDHLT 699
Query: 709 EESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKG 768
E+S L YS YR + ST L GF +K ++KG
Sbjct: 700 EKSGEL---YSAYRAHCARINEYTRSTTDFYTALANAGF--------TKKRTNKGVMVKG 748
Query: 769 LKLK 772
L+LK
Sbjct: 749 LQLK 752
>gi|76786816|ref|YP_329358.1| prophage LambdaSa04, DNA primase [Streptococcus agalactiae A909]
gi|76561873|gb|ABA44457.1| prophage LambdaSa04, DNA primase, P4 family [Streptococcus
agalactiae A909]
Length = 761
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 110/389 (28%), Positives = 164/389 (42%), Gaps = 32/389 (8%)
Query: 405 TAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKEL--YITK-STGTPFV 461
TA A + +I LD L + DL G + YITK +T +P
Sbjct: 398 TATHNTAKPMLAIDLSELDKDDMVLNTPEATYDLRIGLSGSHEHDPKDYITKMTTVSPGD 457
Query: 462 EGEPS-QEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNL 520
+G QE L + + +E++DY +GMA +G + I G G +GKST N
Sbjct: 458 QGMGLWQE--TLATFFCNDQELIDYVQEIIGMAAIGKVYQEHMIIAYGGGANGKSTFWNT 515
Query: 521 IKYAFGN-QYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIK 579
I G+ ++A+A + R +P L L G R+VI SE E +N A +K
Sbjct: 516 IARVLGSYSGKLSADALTMSNKR-----NVSPELAELKGKRLVIASEMAEGMRLNTAVVK 570
Query: 580 QMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR 639
Q+T D + A Y + + P S T + N V DD WRR +VIPF+ I R
Sbjct: 571 QITSTDEIQAEKKYKDPFHFVP-SHTLVLYTNHLPKVGANDDGTWRRLVVIPFNAKITGR 629
Query: 640 D--ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWI 697
+FA L W ++G + I +P + + R+ D ++
Sbjct: 630 SDIKNFADYLYDHAAPAIMSWIIEGAEKAIKANFKTKVPAAVANSVKVYREANDWLGHFL 689
Query: 698 DDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIE 757
+CC++G+ L E+S L Y Y Q + Y R +T L Q GF +R++
Sbjct: 690 SECCEVGDKLSEKSGELYSRYRAYCVQNMEYTR---NTTDFYAALAQAGF----ERKRTN 742
Query: 758 KEWKSKRIIKGLKLKPAFESVDDNSNIID 786
K I GLKL DD + +D
Sbjct: 743 K----GNFIMGLKL------ADDGDDFLD 761
>gi|83648331|ref|YP_436766.1| hypothetical protein HCH_05685 [Hahella chejuensis KCTC 2396]
gi|83636374|gb|ABC32341.1| predicted ATPase [Hahella chejuensis KCTC 2396]
Length = 758
Score = 117 bits (294), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 108/393 (27%), Positives = 170/393 (43%), Gaps = 31/393 (7%)
Query: 388 NTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPT 447
++D R+ + + + + + + T + D+ L G+++L TGQ
Sbjct: 381 DSDKRKGRLASAATIAAVEKIARSDPAHASTPEEWDADIWALNTPGGVVELRTGQIRAHR 440
Query: 448 KELYITKST-GTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHI 506
+E +TKST TP + + FL V+G + E+ +Y R VG L G A +
Sbjct: 441 REDRMTKSTSATPKGDCPTWRTFLADVTG--QDAELQEYLQRVVGYCLSGATSAHALFFL 498
Query: 507 RGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS-LIRLMGSRIVIIS 565
G G +GKS +N++ G+ Y NA M+ R G +P+ L L G+R V
Sbjct: 499 YGTGANGKSVFVNVVGAILGD-YAANAPMDTFMEAR----GDRHPTDLAGLRGARFVSAI 553
Query: 566 ETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625
ET + N +K+K +TGGD ++AR + + +P F I N +RN D+A R
Sbjct: 554 ETEQGRRWNESKVKAITGGDKISARFMRQDFFEYAP-QFKLLIAGNHKPAIRNVDEAMKR 612
Query: 626 RYIVIPF--DKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAK 683
R +IPF P RD KL + W ++G ++ GL P C++A
Sbjct: 613 RLHLIPFTVTVPPEKRDGGLTDKLLAERG-GILAWAVEGCLEWLRDGLK---PPDCVRAA 668
Query: 684 EEER-QGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNY--DRKRISTRTVTL 740
EE + D WI++ C+ S L + E+ E+ Y KR S +T
Sbjct: 669 TEEYFEAEDALGQWIEERCERIGQAKTASSELYADWREWAERAGEYVGSIKRFSETLITR 728
Query: 741 NLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773
+ Q GG R KGL+L+P
Sbjct: 729 DFMQSRLHGGT------------RGFKGLRLRP 749
>gi|229016445|ref|ZP_04173387.1| hypothetical protein bcere0030_10200 [Bacillus cereus AH1273]
gi|228744853|gb|EEL94913.1| hypothetical protein bcere0030_10200 [Bacillus cereus AH1273]
Length = 795
Score = 117 bits (293), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 99/371 (26%), Positives = 167/371 (45%), Gaps = 25/371 (6%)
Query: 409 LEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE 468
L+ + S+ LDS S +G++DL+TG+ + ++L +TK + + +
Sbjct: 414 LDVKPMVSVRKKELDSHSFLFNCDNGVIDLKTGELLPHDRDLLLTKLSPIKYDKNAECPN 473
Query: 469 FLDLVSGYFES------EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIK 522
+ + F++ E+++Y + +G +L G K Q + G G +GKST +N+I+
Sbjct: 474 WKSFMESIFKTPAGEPDHELINYLQKAIGYSLTGVTKEQVMFFLFGNGRNGKSTFINIIQ 533
Query: 523 YAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMT 582
G+ Y + ++ R N + RL G+R V E+ E +++ A +KQ+T
Sbjct: 534 DLLGD-YGRQTNSDTFLKKRNDSG--INNDVARLDGARFVSAVESEEGQQLSEALVKQIT 590
Query: 583 GGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--D 640
GG+ M+AR Y E F F N V+ D+ WRR ++IPF I D
Sbjct: 591 GGEKMSARF-LRQEYFEFTPEFKVFFTTNHKPIVKGSDEGIWRRIMLIPFTVTIPKDKID 649
Query: 641 ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDC 700
KL K +W ++G + ++GL PE A E R+ D +ID+
Sbjct: 650 YDLPDKL-AKEMPGVLRWAVEGCMKWQTEGLRA--PEAVKAATAEYREDMDILGPFIDEN 706
Query: 701 CDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEW 760
C + E+ L ++Y+++ Q D K R L+ +GF K EK
Sbjct: 707 CAVYSTARVEAKLLYENYTKWCYQNNEMDLK---NRAFYRQLEIRGF-------KKEKGS 756
Query: 761 KSKRIIKGLKL 771
K+K I G+ L
Sbjct: 757 KNKTFIHGMTL 767
>gi|314933979|ref|ZP_07841344.1| putative nucleoside triphosphatase, D5 family [Staphylococcus
caprae C87]
gi|313654129|gb|EFS17886.1| putative nucleoside triphosphatase, D5 family [Staphylococcus
caprae C87]
Length = 769
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 117/446 (26%), Positives = 190/446 (42%), Gaps = 36/446 (8%)
Query: 304 ASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMK 363
A RF D Y Y F Y D W DK ++ +D++ SI N V
Sbjct: 329 ADRFIDRYGNLYKYSYIANKF-YIYDGMKWKVDDKGSI---RKLIDEMIESIKNEKVLHS 384
Query: 364 EDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLD 423
EDV +EE R +F Y++ ++AK + E T D D
Sbjct: 385 EDV---TEE---------EAREFFQKYYKKT---RGTQAKKNIMN-ELMHRRPATPDEFD 428
Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEE-V 482
L +G +DL + + K ++ T T + E +LD ++ F ++ V
Sbjct: 429 KDDMLLNVANGYIDLTSRELYKHDINKMFSQITNTDYTEKMQPAVWLDFLNDIFAGDKAV 488
Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542
+ Y + +G +L G + Q + G G +GKS + +I G+ Y N +A +M +
Sbjct: 489 IRYIQKALGYSLTGSTREQIMFILFGKGRNGKSIFVEVISEILGD-YSNNMQAKSLMVKK 547
Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602
N + RL +R V SE NE + IKQ+TGGD TAR Y + +P
Sbjct: 548 ---NDNVNTDIARLSKARFVTSSEPNEGFRFDEGLIKQLTGGDKATARFLYAEEFEYTP- 603
Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAK---KWF 659
F ++ N +R DD WRR ++IPFD I + L+ K EA W
Sbjct: 604 KFKIWVSTNHKPIIRGTDDGIWRRLVLIPFDVQIPEEKVD--KDLKYKLLREAPAILNWM 661
Query: 660 LKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYS 719
+G ++ +GL +PE +A + R D + +I+D C ++ ++H L + Y
Sbjct: 662 AEGAYMWMQEGL--AMPEKLKEASKAYRNEMDVIEQFIEDECKRVDDGKVKAHELYELYK 719
Query: 720 EYREQELNYDRKRISTRTVTLNLKQK 745
++ + NY ++S + +K+K
Sbjct: 720 KWADDNGNY---KMSNKDFGKKMKEK 742
>gi|312115495|ref|YP_004013091.1| phage/plasmid primase, P4 family [Rhodomicrobium vannielii ATCC
17100]
gi|311220624|gb|ADP71992.1| phage/plasmid primase, P4 family [Rhodomicrobium vannielii ATCC
17100]
Length = 726
Score = 115 bits (289), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 98/368 (26%), Positives = 164/368 (44%), Gaps = 28/368 (7%)
Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLD--- 471
F++TSD+ + + LG +G +DL TG+ E I++ T + P EF
Sbjct: 366 FAVTSDVWNRDTMLLGTPNGTVDLRTGELRDARPEDRISRVTAVAPI---PHDEFRAKRD 422
Query: 472 -------LVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524
L + + + G +L G + Q+ + + G GGSGK T +N +
Sbjct: 423 CPRWLAFLDEALAGDAGAIRFLQQWCGYSLTGETREQKLVFVYGPGGSGKGTAINTVGDI 482
Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGG 584
G+ Y +N + ++ + L RL G+R+ SET + +IK +TG
Sbjct: 483 LGD-YAVNVGMETLTASKYE---RHTTELARLRGARMARASETEKGKAWAENRIKNLTGQ 538
Query: 585 DCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFA 644
D +TAR + + +P F I N +R+ D A RR++++PFD P + A
Sbjct: 539 DTITARFMRQDDFEFAP-EFKLTIFGNNRPSLRDVDAAIKRRFLILPFDHPPRRPNTKLA 597
Query: 645 QKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIG 704
L+ ++ W + G + GL V P V A +E DT+ W+ D CD+G
Sbjct: 598 DALKREWP-GILAWLIDGCLDWQESGLIV--PPVMDAATKEYFAAEDTFAQWLADRCDVG 654
Query: 705 ENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKR 764
+ S +L S+S Y + T TL+ Q+GF KR++I ++ KR
Sbjct: 655 PEFVDTSDNLWDSWSRYAYGLGEEPGTKKGTFAETLS--QRGF---FKRDQIGRD--RKR 707
Query: 765 IIKGLKLK 772
+GL+++
Sbjct: 708 GYRGLRVR 715
>gi|256617080|ref|ZP_05473926.1| phage DNA polymerase [Enterococcus faecalis ATCC 4200]
gi|257088357|ref|ZP_05582718.1| phage DNA polymerase [Enterococcus faecalis D6]
gi|256596607|gb|EEU15783.1| phage DNA polymerase [Enterococcus faecalis ATCC 4200]
gi|256996387|gb|EEU83689.1| phage DNA polymerase [Enterococcus faecalis D6]
Length = 748
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 112/381 (29%), Positives = 163/381 (42%), Gaps = 38/381 (9%)
Query: 411 AGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPS---- 466
A + I +LD + L DL TG E YITK T E +PS
Sbjct: 395 ARPMLEIEQRILDVNEFLLNTPSATYDLRTGYTQDHKAEDYITKQT-----ECDPSSNNE 449
Query: 467 QEFLDLVSGYFES-EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF 525
Q + D ++ F +E++DY VG+A +G + I G G +GKST N+I
Sbjct: 450 QLWFDALNTIFVGDQELIDYVQMIVGLAAIGKVYVEALIISYGEGRNGKSTFWNVISRVL 509
Query: 526 GN-QYVINAE--ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMT 582
GN I+A+ S I +N PE +A G R++I +E E +N + IKQ+
Sbjct: 510 GNYSGSISADILTSQIRRNVKPELAEAK-------GKRLLIAAELEEGMRLNTSNIKQLC 562
Query: 583 GGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI-ANRDA 641
D + A Y + + P + T + N V D WRR IVIPF I N+D
Sbjct: 563 STDEIAAEKKYKDPFRYVP-THTLVLYTNHLPKVGAIDKGTWRRLIVIPFLATIEGNKDV 621
Query: 642 -SFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDC 700
++A L KW L+G K I+ + +P V +A EE + D ++++C
Sbjct: 622 KNYADYLFENAGGAVLKWILEGAKRVIAADYKLPVPRVVNEAIEEYKAANDWLGHFLEEC 681
Query: 701 CDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEW 760
C+ E+S + YSEYR RT F I+ +
Sbjct: 682 CETDSEYVEKS---GEVYSEYRA---------FCMRTGEYTRSSADFYAAIENAGFARHR 729
Query: 761 KSK-RIIKGLKLKPAFESVDD 780
K R IKGL++K F +DD
Sbjct: 730 NKKGRYIKGLRVKSEF--LDD 748
>gi|158318012|ref|YP_001510520.1| P4 family phage/plasmid primase [Frankia sp. EAN1pec]
gi|158113417|gb|ABW15614.1| phage/plasmid primase, P4 family [Frankia sp. EAN1pec]
Length = 725
Score = 115 bits (288), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 107/404 (26%), Positives = 183/404 (45%), Gaps = 30/404 (7%)
Query: 391 YRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKEL 450
Y+R ++ + +T + + + DL D+ L Q G++DL TG VKP +
Sbjct: 340 YKRASLSSTGLSGATRVAQSDPRVTVLARDL-DAHPHLLNTQSGVVDLVTG-AVKP-HDP 396
Query: 451 YITKSTGTPF-VEGEPSQEFLD--LVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIR 507
++ + TP V+ E + L + E++ Y G+ALLG + +
Sbjct: 397 WLMLTRITPLDVDTEATHPMWSEFLAETFGGDTELVAYVQSLCGLALLGDVREHVLPLMY 456
Query: 508 GVGGSGKSTLMNLIKYAFG----NQYVINAEASDIMQNRPPEAGKANPSLI-RLMGSRIV 562
G G +GK ++ +++ G Y ++A +M G A+P+ I RL G+R+V
Sbjct: 457 GAGANGKGVILLVLQGLLGIADTGGYSVSAPDGFLMAGN----GTAHPTEIARLRGARLV 512
Query: 563 IISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLF-VRNPDD 621
+ SE + AK+K++TGGD +T R G+ + P+ T +V HL V
Sbjct: 513 VCSEQTSGRRFDEAKVKRLTGGDLLTGRFMRGDFFDFEPSHLT--VVATNHLPEVIEGGP 570
Query: 622 AWWRRYIVIPFDK--PIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVC 679
++WRR +IPFD P RD KL + W ++G I GL VD P V
Sbjct: 571 SFWRRARLIPFDHVVPPERRDTELHTKLLSAEGPAILGWMVRGAMIVIGSGL-VDPPRV- 628
Query: 680 LKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVT 739
L A ++ R D+ +++ D C + + W Y E E+ D +S + VT
Sbjct: 629 LAATDDYRISEDSLASFVRDDCIVNPHAWCTVPDFRTRY-EAHCAEMGVD--PLSAKAVT 685
Query: 740 LNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDNSN 783
L ++ F ++ +++ + S+RI +G+ L A D+ +
Sbjct: 686 TRLTRE-FP--VQSDRLSR--PSRRIYRGIGLVDADAESDEETG 724
>gi|227522313|ref|ZP_03952362.1| primase [Lactobacillus hilgardii ATCC 8290]
gi|227090520|gb|EEI25832.1| primase [Lactobacillus hilgardii ATCC 8290]
Length = 767
Score = 115 bits (287), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 93/343 (27%), Positives = 158/343 (46%), Gaps = 19/343 (5%)
Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETG-QKVKPTKELYITKSTGT 458
S A A E + D L +G +DL +G K K+++ + T
Sbjct: 402 SHAAKQAMISEVQHRVPVLHGQFDQDKTLLNTVNGYIDLTSGILKDHDIKKMF-SHQTSV 460
Query: 459 PFVEGEPSQEFLDLVSGYFES-EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTL 517
+ + E+ + ++ F +E++ Y + VG + G K Q + G G +GKS
Sbjct: 461 EYTDKIDCPEWDEFLNQIFAGDQELIHYIQKAVGYSATGSIKEQVMFILYGNGRNGKSIF 520
Query: 518 MNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK 577
++ I G Y + +A IM R ++G AN + RL +R+V SE NE ++
Sbjct: 521 IDTISDILGT-YAKSMQADSIMV-RQNKSG-ANSDIARLESARLVTSSEPNEGVRLDEGL 577
Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK--P 635
+KQ+TGGD +TAR YG + P F ++ N +R DD WRR ++IPF P
Sbjct: 578 VKQLTGGDKVTARYLYGKEFEFKP-QFKLWLATNHKPIIRGTDDGIWRRLMLIPFKVKIP 636
Query: 636 IANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQA 695
D + KL+ + ++ W ++G + +GL+ P +A + R+ D
Sbjct: 637 DGQVDKNLKDKLK-RESVGILNWIVEGSLLWQREGLNP--PISVTRASRQYREEMDVISL 693
Query: 696 WIDDCCDIGEN-------LWEESHSLAKSYSEYREQELNYDRK 731
++DDCC++ +N L+++ S AK SEY + + R+
Sbjct: 694 FVDDCCEVSDNYRSPAGELFKKYQSWAKDNSEYSMSKQKFSRE 736
>gi|291541585|emb|CBL14695.1| phage/plasmid primase, P4 family, C-terminal domain [Ruminococcus
bromii L2-63]
Length = 774
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 83/283 (29%), Positives = 131/283 (46%), Gaps = 9/283 (3%)
Query: 422 LDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESE- 480
+D L GI++L+ G+ E Y TK T + +L + F +
Sbjct: 438 MDKYRMALNTPSGIINLKNGEVRAHNPEYYFTKITSVDCSQTAECPRWLAFLDDIFAGDK 497
Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540
E++ Y + VG +L G Q + G G +GKST +++I+ FG+ Y N + IM
Sbjct: 498 ELIRYIQKAVGYSLTGSTAEQCAFFLYGTGRNGKSTFIDVIRDVFGD-YAANIQPETIMV 556
Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600
R ++ N + RL G+R+V E NE IN +KQ+TG D +TAR Y +
Sbjct: 557 -RNSQSSAINSDIARLKGARLVTSVEPNEGVRINEGLLKQLTGDDTVTARKLYSEEFEFK 615
Query: 601 PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAKKW 658
P F ++ N +R D WRR +IPF+ I D + KL+ + T KW
Sbjct: 616 P-EFKLWMATNHKPIIRGTDTGIWRRIHMIPFNVQIPEDKVDKNLTHKLKAEMT-AIFKW 673
Query: 659 FLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCC 701
+ G + +GL +P L++ E ++ D A+I+D C
Sbjct: 674 CIDGCILWQREGL--KMPSAVLQSVREYKREMDVISAFIEDRC 714
>gi|298346382|ref|YP_003719069.1| phage-associated protein [Mobiluncus curtisii ATCC 43063]
gi|298236443|gb|ADI67575.1| phage-associated protein [Mobiluncus curtisii ATCC 43063]
Length = 747
Score = 114 bits (284), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 109/377 (28%), Positives = 163/377 (43%), Gaps = 26/377 (6%)
Query: 405 TAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGT-PFVEG 463
TA EA + +T LD+ L G +DL TGQ + +ITK T T P +G
Sbjct: 389 TASLKEAAPMLQVTQADLDADPFALNTPGGTIDLTTGQMYEHDYGDFITKQTTTDPATKG 448
Query: 464 EPSQEFLDLVSGYFES-EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIK 522
+ +L + +F+ +E++DY R VG+ +G + I G G +GKST N I
Sbjct: 449 MDT--WLAALEVFFQGDQELIDYVQRIVGLTAIGKVYVEALIIAYGDGRNGKSTFWNTIA 506
Query: 523 YAFGNQYV--INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQ 580
G Y I+A+A + R P L G R++I +ET E ++ + KQ
Sbjct: 507 RVLGT-YAGNISADALTVGVKR-----NVKPELAEAKGKRLLIAAETEEGMRLSTSIAKQ 560
Query: 581 MTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD 640
M D + A Y ++ +P S T + N V D WRR IVIPF+ I
Sbjct: 561 MASTDLLYAEKKYKAPFAFAP-SHTLVLYTNHLPRVGAMDVGIWRRLIVIPFEAKIEGSS 619
Query: 641 --ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID 698
++A+ L +W + G + I + P +A E R D ++D
Sbjct: 620 DIKNYAEHLYQNAAGAVLQWIVDGARKVIDDDFVLKPPPKVRRALEAYRFENDWMTHFLD 679
Query: 699 DCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEK 758
D C+I + + S L YS YR L+ ST L+Q GF +R +
Sbjct: 680 DNCEIDPSFTQPSGEL---YSVYRAYALSVGEYARSTSDFYSALEQLGF----RRRRT-- 730
Query: 759 EWKSKRIIKGLKLKPAF 775
K+ R + GL+LK F
Sbjct: 731 --KNARYVDGLRLKSEF 745
>gi|227528969|ref|ZP_03959018.1| phage primase [Lactobacillus vaginalis ATCC 49540]
gi|227351106|gb|EEJ41397.1| phage primase [Lactobacillus vaginalis ATCC 49540]
Length = 803
Score = 114 bits (284), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 83/312 (26%), Positives = 139/312 (44%), Gaps = 15/312 (4%)
Query: 422 LDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFES-E 480
D L + G +DL +G ++ ++ T + + E+ + F + E
Sbjct: 458 FDKEIMLLNTKSGYVDLNSGVLHDHDRDKMFSQQTAAEYTDNIDCPEWDKFLHQVFNNNE 517
Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540
E++ Y + VG + G K Q + G G +GKS +N I G Y S IM
Sbjct: 518 ELIHYIQKAVGYSATGSVKEQVMFILYGNGRNGKSVFINTIADILGT-YAETMNVSSIM- 575
Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600
AN + RL G+R+VI SE NE ++ +KQ+TGGD + AR YGN + +
Sbjct: 576 --VKNNNGANSDIARLEGARLVISSEANEGSRLDEGLLKQLTGGDKIVARHLYGNEFEFN 633
Query: 601 PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI----ANRDASFAQKLETKYTLEAK 656
P F ++ N +R D+ WRR ++IPF I ++D + + E L
Sbjct: 634 P-EFKLWMATNHKPLIRGTDEGIWRRIMLIPFTVQIPKDKVDKDLKYKLQREGTGIL--- 689
Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAK 716
W ++G + ++GL+ PE+ KA +E + D ++ + C+ G + + L
Sbjct: 690 NWIVQGAMMWQAEGLNP--PEIVTKASQEYKDEMDVVSYFVSEKCETGSDYKVPAGELFN 747
Query: 717 SYSEYREQELNY 728
Y E+ + Y
Sbjct: 748 VYREWANESGEY 759
>gi|315654960|ref|ZP_07907865.1| P4 family prophage LambdaSa04 [Mobiluncus curtisii ATCC 51333]
gi|315490921|gb|EFU80541.1| P4 family prophage LambdaSa04 [Mobiluncus curtisii ATCC 51333]
Length = 747
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 110/377 (29%), Positives = 162/377 (42%), Gaps = 26/377 (6%)
Query: 405 TAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGT-PFVEG 463
TA EA + +T LD+ L G +DL TGQ + +ITK T T P +G
Sbjct: 389 TASLKEAAPMLQVTQADLDAGPFALNAPGGTIDLTTGQIHEHDYGDFITKQTTTDPATKG 448
Query: 464 EPSQEFLDLVSGYFES-EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIK 522
+ +L + +F+ +E++DY R VG+ +G + I G G +GKST N I
Sbjct: 449 MDT--WLAALEVFFQGDQELIDYVQRIVGLTAIGKVYVEALIIAYGDGRNGKSTFWNTIA 506
Query: 523 YAFGNQYV--INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQ 580
G Y I+A+A + R P L G R++I +ET E ++ + KQ
Sbjct: 507 RVLGT-YAGNISADALTVGVKR-----NVKPELAEAKGKRLLIAAETEEGMRLSTSIAKQ 560
Query: 581 MTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD 640
M D + A Y ++ +P S T + N V D WRR IVIPF+ I
Sbjct: 561 MASTDLLYAEKKYKAPFAFAP-SHTLVLYTNHLPRVGAMDVGIWRRLIVIPFEAKIEGSS 619
Query: 641 --ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID 698
++A+ L +W + G + I P +A E R D ++D
Sbjct: 620 DIKNYAEHLYQNAAGAVLQWIVDGARKVIDDDFVFKPPPKVRRALEAYRFENDWMTHFLD 679
Query: 699 DCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEK 758
D C+I + + S L YS YR L+ ST L+Q GF +R +
Sbjct: 680 DNCEIDPSFTQPSGEL---YSVYRAYALSVGEYARSTSDFYSALEQLGF----RRRRT-- 730
Query: 759 EWKSKRIIKGLKLKPAF 775
KS R + GL+LK F
Sbjct: 731 --KSARYVDGLRLKSEF 745
>gi|196037390|ref|ZP_03104701.1| gp60 [Bacillus cereus NVH0597-99]
gi|196031632|gb|EDX70228.1| gp60 [Bacillus cereus NVH0597-99]
Length = 795
Score = 113 bits (283), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 104/396 (26%), Positives = 175/396 (44%), Gaps = 32/396 (8%)
Query: 409 LEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE 468
L+ + S+ LD+ + +G++DL+TG+ + ++L +TK + + +
Sbjct: 414 LDVRPMVSVKKKELDAHNFLFNCDNGVIDLKTGELLPHDRDLLLTKLSPIKYDKNADCPN 473
Query: 469 FLDLVSGYFESE------EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIK 522
+ + F++ E+++Y + +G +L G K Q + G G +GKST +N+I+
Sbjct: 474 WKAFMESIFKTPAGEPDPELINYLQKAIGYSLTGVTKEQVMFFLFGNGRNGKSTFINIIQ 533
Query: 523 YAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMT 582
G+ Y + ++ R N + RL G+R V E+ E +++ A +KQ+T
Sbjct: 534 DLLGD-YGRQTNSDTFLKKRNDSG--INNDVARLDGARFVSAVESEEGQQLSEALVKQIT 590
Query: 583 GGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--D 640
GG+ M+AR Y E F F N V+ D+ WRR ++IPF I D
Sbjct: 591 GGEKMSARF-LRQEYFEFTPEFKVFFTTNHKPIVKGSDEGIWRRIMLIPFTVTIPKDKID 649
Query: 641 ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDC 700
KL K +W ++G + ++GL PE A E R+ D +ID+
Sbjct: 650 YDLPDKL-AKEMPGVLRWAVEGCMKWQAEGLRA--PEAVKAATAEYREDMDILAPFIDEN 706
Query: 701 CDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEW 760
C + E+ L ++Y+++ Q D K R L+ +GF K EK
Sbjct: 707 CTVHPTERIEAKLLYENYTKWCYQNNELDLK---NRAFYRQLEIRGF-------KKEKGS 756
Query: 761 KSKRIIKGLKLK----PAFESVDD---NSNIIDFKR 789
K+K I G+ L + S DD SNI R
Sbjct: 757 KNKTFIMGMTLNSHASASLFSTDDKKEESNITPMNR 792
>gi|331701892|ref|YP_004398851.1| phage/plasmid primase, P4 family [Lactobacillus buchneri NRRL
B-30929]
gi|329129235|gb|AEB73788.1| phage/plasmid primase, P4 family [Lactobacillus buchneri NRRL
B-30929]
Length = 767
Score = 113 bits (282), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 92/343 (26%), Positives = 158/343 (46%), Gaps = 19/343 (5%)
Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETG-QKVKPTKELYITKSTGT 458
S A A E + D L +G +DL +G K K+++ + T
Sbjct: 402 SHAAKQAMISEVQHRVPVLHGQFDQDKTLLNTVNGYIDLTSGILKDHDIKKMF-SHQTSV 460
Query: 459 PFVEGEPSQEFLDLVSGYFES-EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTL 517
+ + E+ + ++ F +E++ Y + VG + G K Q + G G +GKS
Sbjct: 461 EYTDKIDCPEWDEFLNQIFAGDQELIHYIQKAVGYSATGSIKEQVMFILYGNGRNGKSIF 520
Query: 518 MNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK 577
++ I G Y + +A IM R ++G AN + RL +R+V SE NE ++
Sbjct: 521 IDTISDILGT-YAKSMQADSIMV-RQNKSG-ANSDIARLESARLVTSSEPNEGVRLDEGL 577
Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK--P 635
+KQ+TGGD +TAR YG + P F ++ N +R DD WRR ++IPF P
Sbjct: 578 VKQLTGGDKVTARYLYGKEFEFKP-QFKLWLATNHKPIIRGTDDGIWRRLMLIPFKVKIP 636
Query: 636 IANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQA 695
D + KL+ + ++ W ++G + +GL+ P +A + R+ D
Sbjct: 637 DGQVDKNLKDKLK-RESVGILNWIVEGCLLWQREGLNP--PISVTRASRQYREEMDVISL 693
Query: 696 WIDDCCDIGEN-------LWEESHSLAKSYSEYREQELNYDRK 731
++DDCC++ ++ L+++ S AK SEY + + R+
Sbjct: 694 FVDDCCEVSDSYRAPAGELFKKYQSWAKDNSEYSMSKQKFSRE 736
>gi|154247365|ref|YP_001418323.1| P4 family phage/plasmid primase [Xanthobacter autotrophicus Py2]
gi|154161450|gb|ABS68666.1| phage/plasmid primase, P4 family [Xanthobacter autotrophicus Py2]
Length = 462
Score = 113 bits (282), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 106/371 (28%), Positives = 162/371 (43%), Gaps = 29/371 (7%)
Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTG-TPFVEGEPSQ--EFLD 471
F++T D D LG G +DL TG ITK G TP E + +FL+
Sbjct: 109 FAVTMDAWDRDPFMLGTPGGTVDLRTGILRPADPADGITKLAGCTPAAEAMCRRWLQFLE 168
Query: 472 LVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVI 531
+G E + + + G +L G + I + G GG+GKS +N++ A Y
Sbjct: 169 EATG--GDAEAIRFMQQWCGYSLTGDTREHALIFVYGPGGNGKSVFLNVLT-AIMADYAT 225
Query: 532 NAEASDIMQNRPPEAGKANPS-LIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR 590
A M +P+ L L G+R+V SET E ++IKQMTGGD +TAR
Sbjct: 226 TA----AMDTFTASHNDKHPTDLAMLRGARLVTASETEEGRAWAESRIKQMTGGDTITAR 281
Query: 591 LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETK 650
+ +S P +F IV N +RN DDA RR+ ++PF + A D KL+ +
Sbjct: 282 FMRQDFFSFRP-NFKLTIVGNHKPALRNVDDAARRRFNIVPFTRKPATPDPELEAKLKEE 340
Query: 651 YTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE---NL 707
+ +W ++G + GL P +A + D WI++ C + ++
Sbjct: 341 WP-GILRWMIEGCLDWQKNGLVR--PASVTEATQTYFSDQDLLGQWIEEMCRVERERPDM 397
Query: 708 WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIK 767
W+ L +S++EY S ++ + +KGF E I K S R K
Sbjct: 398 WDRRADLFESWTEYAR---GAGEDAGSAKSFYEAMLRKGF------EPIRKH--SGRGFK 446
Query: 768 GLKLKPAFESV 778
G++L P S
Sbjct: 447 GIQLLPKAHSA 457
>gi|85716953|ref|ZP_01047917.1| hypothetical protein NB311A_09386 [Nitrobacter sp. Nb-311A]
gi|85696232|gb|EAQ34126.1| hypothetical protein NB311A_09386 [Nitrobacter sp. Nb-311A]
Length = 460
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 91/339 (26%), Positives = 153/339 (45%), Gaps = 23/339 (6%)
Query: 393 RQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYI 452
R+ + + S A + + ++++D D LG G +DL TG P + I
Sbjct: 85 RKTIGKTSFAGGIERFARNDRVTAVSADYWDRDLWLLGTPGGTVDLRTGVLRNPIRSDGI 144
Query: 453 TKST-GTPFVEGEPSQEFLDLVSGYFESEE-VMDYFTRCVGMALLGGNKAQRFIHIRGVG 510
TKST P +G P +L ++ + ++ ++ + + G L G + + G G
Sbjct: 145 TKSTFCAPLEDGCP--RWLRFLAETTDKDQGLVRFLQQWCGYCLTGVTNQHALVFVYGPG 202
Query: 511 GSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN 570
G+GKS +N++ A +Y + + + + + L L G+R+V SET E
Sbjct: 203 GNGKSVFLNVVT-AIMAEYATTSAMDTFTAS---QNDRHSTELAMLNGARLVTASETEEG 258
Query: 571 DEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVI 630
A+IK +TGGD +TAR + ++ +P F +V N + N DDA RR+ ++
Sbjct: 259 RAWAEARIKALTGGDKITARFMRQDNFTFTP-QFKLIVVGNHKPVLHNVDDAARRRFNIV 317
Query: 631 PFDKPIANRDASFAQKLETKYTLEAK---KWFLKGVKAYISKGLDVDIPEVCLKAKEEER 687
PF D +LE K EA +W + G + GL PE A E
Sbjct: 318 PFMLKPEQPD----HELERKLMAEAGGILRWMIDGCLDWQRAGLIR--PESVKAATEAYF 371
Query: 688 QGTDTYQAWIDDCCDIGEN-----LWEESHSLAKSYSEY 721
D + W++DCC++ + +W+ S L +S+SEY
Sbjct: 372 SDQDLFGQWLEDCCEVRIDRGPHFIWDRSADLFESWSEY 410
>gi|255020312|ref|ZP_05292380.1| hypothetical protein ACA_2130 [Acidithiobacillus caldus ATCC 51756]
gi|254970232|gb|EET27726.1| hypothetical protein ACA_2130 [Acidithiobacillus caldus ATCC 51756]
Length = 766
Score = 112 bits (279), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 105/355 (29%), Positives = 156/355 (43%), Gaps = 31/355 (8%)
Query: 416 SITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ---EFLDL 472
+ T D D+ L Q G++DL TG+ + +TK V G FL+
Sbjct: 412 AATPDEWDADPWLLNTQGGVVDLRTGRMRPHDRADRMTKIAPATLVPGSACPTWIRFLEQ 471
Query: 473 VSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532
V+G E+ Y R VG L G + G G +GKS +N + G+ Y N
Sbjct: 472 VTG--GDAELQAYLQRMVGYCLTGSTAEHALFFLYGTGANGKSVFVNTLATILGD-YAAN 528
Query: 533 AEASDIMQNRPPEAGKANPS-LIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARL 591
A M+ R G +P+ L L G+R+V +ET + N AKIK++TGGD +TAR
Sbjct: 529 APMDTFMEAR----GDRHPTDLAGLRGARLVTATETEQGRRWNEAKIKEITGGDRITARF 584
Query: 592 NYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK--PIANRDASFAQKL-- 647
+ ++ P F I N +RN D+A RR +IPF P RD + QKL
Sbjct: 585 MRQDFFTYVP-QFKLVIAGNHKPAIRNVDEAMRRRLHLIPFTVTIPPERRDKTLQQKLLA 643
Query: 648 ETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENL 707
E L W ++G A+ +GL P+ L A +E + D W+++ C N
Sbjct: 644 ERDGIL---AWAVQGCLAWQREGLRP--PQSVLDATDEYFEAEDALGRWLEERCVRDPNA 698
Query: 708 WEESHSLAKSYSEYREQ--ELNYDRKRISTRTVTLNLKQ-------KGFIG-GIK 752
L + ++ E E +KR S +T L++ +GF G G+K
Sbjct: 699 KSLVAELFSDWKQWAEAAGEFVGSQKRFSDLLLTRGLEKWRNGMGLRGFRGVGLK 753
>gi|241894876|ref|ZP_04782172.1| primase [Weissella paramesenteroides ATCC 33313]
gi|241871884|gb|EER75635.1| primase [Weissella paramesenteroides ATCC 33313]
Length = 796
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 92/331 (27%), Positives = 159/331 (48%), Gaps = 15/331 (4%)
Query: 401 KAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTG-TP 459
K ++A+ L A S+ ++ ++ D + DG+ DL TG++ + Y TKST P
Sbjct: 428 KGLNSAKKLLA-SMVNVDINIFDKEVGVINTPDGVYDLATGERSDNDPKRYFTKSTLIAP 486
Query: 460 FVEGEPSQ--EFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTL 517
EP + FL+ V +++DY + VG ++ G + Q ++ + G G +GK L
Sbjct: 487 DKNLEPKEFKTFLNQV--MLGDADMVDYLMKFVGYSMFGNGEEQEYVLLYGNGRNGKGVL 544
Query: 518 MNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK 577
M+ IK A G+ + A D + ++ N L RL G+R+V +SE +N +++AA
Sbjct: 545 MSAIKNALGD--YVTAVNPDTFMDDGKKSTSNNDELARLRGARLVSVSEIAQNKKLDAAI 602
Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI- 636
IK++TGG A Y Y E ++ PF N + + + WRR VIPF+ I
Sbjct: 603 IKKLTGGGTFVANEKYNRPY-EFQSAGVPFFDTNYLPQINDTSEGIWRRTNVIPFNLTIK 661
Query: 637 -ANRDASFAQKLETKYTLEAKKWFL-KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQ 694
+ D + KLET+ A W+L K + ++GL +P +A E+ +D
Sbjct: 662 EEDVDVNLGHKLETEAG--AILWYLIKAATKWRNEGLG-PVPYAVKQANEKYHSSSDPIG 718
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQE 725
+I + E + E + ++ ++ +E
Sbjct: 719 EFIKETFIENEAGFVEGPDVTNAWGQFVGEE 749
>gi|239638085|ref|ZP_04679044.1| phage primase [Staphylococcus warneri L37603]
gi|239596368|gb|EEQ78906.1| phage primase [Staphylococcus warneri L37603]
Length = 769
Score = 110 bits (276), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 84/308 (27%), Positives = 139/308 (45%), Gaps = 13/308 (4%)
Query: 418 TSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF 477
T D D + +G +DL + + K ++ T T + E +LD ++ F
Sbjct: 423 TPDDFDRDDMLINVANGYIDLTSRELYKHDINKMFSQITNTDYTEKMQPAVWLDFLNDIF 482
Query: 478 ES-EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEAS 536
+EV+ Y + +G +L G + Q + G G +GKS + +I G+ Y N +A
Sbjct: 483 AGDQEVIRYIQKALGYSLTGSTREQIMFILFGKGRNGKSIFVEVISEILGD-YSNNMQAK 541
Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNT 596
+M + N + RL +R V SE NE + IKQ+TGGD +TAR Y
Sbjct: 542 SLMVKK---NDNVNTDIARLSKARFVTSSEPNEGFRFDEGLIKQLTGGDKVTARFLYAEE 598
Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAK 656
+ +P F ++ N +R DD WRR ++IPFD I + L+ K EA
Sbjct: 599 FEYTP-KFKIWVSTNHKPIIRGTDDGIWRRLVLIPFDVQIPEEKVD--KDLKYKLLREAP 655
Query: 657 ---KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHS 713
W +G ++ +GL +PE +A + R D + +I+D C + ++H
Sbjct: 656 AILNWMAEGAYMWMQEGL--AMPEKLKEASKAYRNEMDVIEQFIEDECKRVDGGKVKAHE 713
Query: 714 LAKSYSEY 721
L + Y ++
Sbjct: 714 LYELYKKW 721
>gi|197303501|ref|ZP_03168540.1| hypothetical protein RUMLAC_02223 [Ruminococcus lactaris ATCC
29176]
gi|197297499|gb|EDY32060.1| hypothetical protein RUMLAC_02223 [Ruminococcus lactaris ATCC
29176]
Length = 738
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 92/328 (28%), Positives = 147/328 (44%), Gaps = 17/328 (5%)
Query: 411 AGSIFSITSDLLDSSSRFLGEQDGILDLE---TGQKVKPTKELYITKSTGTPFVEGEPSQ 467
A + +I+ LD + DL G++ +L + +P EG+ Q
Sbjct: 382 AKPMIAISVSDLDKDENLINTPYATFDLRKGLAGEQPHDPGDLITKITACSPGEEGK--Q 439
Query: 468 EFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFG 526
+LD + +F + ++++DY VGMA +G + I G G +GKST N I G
Sbjct: 440 IWLDALKLFFCKDQKLIDYVQETVGMAAIGKVYQEHMIIAYGGGANGKSTFWNTIFRVLG 499
Query: 527 NQYV--INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGG 584
N Y ++AEA + R P + L G R++I SE E +N A +KQ+
Sbjct: 500 N-YAGKLSAEALTMNCKR-----NVKPEMAELKGKRLIISSEMEEGMRLNTAVVKQLCST 553
Query: 585 DCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD--AS 642
D + A Y + +S P S T + N V DD WRR IVIPF+ I + +
Sbjct: 554 DEIQAEKKYKDPFSFVP-SHTLVLYTNHLPKVGANDDGIWRRLIVIPFNAKITGKSDIKN 612
Query: 643 FAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCD 702
+A L W ++G K I K D+P+V A + R+ D ++++CC+
Sbjct: 613 YADYLFEHAGPAIMSWIIEGAKKAIDKEFHTDLPDVVEAAIKAYREDNDWLGQFLEECCE 672
Query: 703 IGENLWEESHSLAKSYSEYREQELNYDR 730
+ + E+S L ++Y + Q Y R
Sbjct: 673 MDPSYKEKSGELYQAYRAHCMQNGEYIR 700
>gi|148252805|ref|YP_001237390.1| putative phage / plasmid primase P4 [Bradyrhizobium sp. BTAi1]
gi|146404978|gb|ABQ33484.1| putative Phage / plasmid primase P4 [Bradyrhizobium sp. BTAi1]
Length = 749
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 110/426 (25%), Positives = 184/426 (43%), Gaps = 44/426 (10%)
Query: 304 ASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMK 363
A RF+ + + KG ++ D K W K + + + KITA ++
Sbjct: 318 AQRFASRWADRILYTPGKGWLVF--DGKRW----KPDSLLECMEFAKITARMI------- 364
Query: 364 EDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSL--EAGSIFSITSDL 421
+ P+D K + R+ ++S +K + + + A S+ +
Sbjct: 365 --ACEAQHLPDDQAKAT------------RRKFADSSLSKGSLERMIDLAKSLVMVDDSR 410
Query: 422 LDSSSRFLGEQDGILDLETGQKVKPTKELYITKS---TGTPFVEGEPSQEFLDLVSGYFE 478
LD++ L G +DL TG +TK P + ++FL+ ++G
Sbjct: 411 LDANPWLLNTTTGTIDLRTGDCDDHDPRDLLTKMIPVAADPTAKCPQFRKFLNRITG--G 468
Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGS-GKSTLMNLIKYAFGNQYVINAEASD 537
+M Y +C G L G + Q F G GS GKSTL+NL++ G+ Y +
Sbjct: 469 DRALMRYLKKCAGYTLTGSTQEQVFFFCYGKSGSNGKSTLINLLRDMLGD-YSRHTPTET 527
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
++ + A+ L RL G R+V E N + ++ AK+K MTGG+ +TAR + +
Sbjct: 528 LLTKQYDNNIPAD--LARLAGVRMVTAIEANFDRHLDEAKLKSMTGGEPITARFMRQDYF 585
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK--PIANRDASFAQKLETKYTLEA 655
+PA F ++V N VR D A+WRR VIPFD P + +D KL ++
Sbjct: 586 EFTPA-FKLWLVANDMPRVRGTDTAFWRRVRVIPFDVQIPESEKDPELPAKLRDEFP-GV 643
Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLA 715
W ++G KA+ ++GL P+ A + D + ++ +C + S SL
Sbjct: 644 LAWAVRGCKAWQAEGLAE--PQTVKLASGRWLEAADHLKRFVAECLIVDPENRLPSSSLL 701
Query: 716 KSYSEY 721
YS +
Sbjct: 702 NRYSNW 707
>gi|313123979|ref|YP_004034238.1| DNA-polymerase or DNA-primase [Lactobacillus delbrueckii subsp.
bulgaricus ND02]
gi|312280542|gb|ADQ61261.1| Putative DNA-polymerase or DNA-primase [Lactobacillus delbrueckii
subsp. bulgaricus ND02]
Length = 784
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 106/407 (26%), Positives = 171/407 (42%), Gaps = 41/407 (10%)
Query: 303 LASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVS- 361
+A RF D + F Y K WY DK+NV W K + +++
Sbjct: 336 MAQRFQDRWPDT---------FRYLVADKEWYYYDKDNV--WKKDDRKNVEKACDVVINE 384
Query: 362 MKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDL 421
+K++ + PE ++ + F T +++ S+A A E + +++
Sbjct: 385 LKDEPLYV---PEGVSEEDAAKAF---TKFKKHM---RSRAAKEAMIKEIMHLLAVSHGE 435
Query: 422 LDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLD------LVSG 475
D L ++G +DL G ++ VE P+ E+ L
Sbjct: 436 FDQDPMLLNVKNGYVDLTDGTLHDADWTKMFSRQAS---VEFSPNAEYDHPMWDKFLYQT 492
Query: 476 YFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535
+ +E ++Y + +G +L G Q G G +GKS ++ +I G+ +
Sbjct: 493 FGGDQEAIEYIQKAIGYSLTGLTSEQVLFFCYGKGRNGKSLMLKVISDILGSYSQTMSAD 552
Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595
+ I++ AN + RL G+R V+ SE NE +N KQ+TGGD + AR YG
Sbjct: 553 TLIVKG---STNGANSDIARLEGARFVVSSELNEGSRLNEGLTKQITGGDRVVARHLYGK 609
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
+ P ++ N +R D+ WRR I++PFD IA D KL K EA
Sbjct: 610 EFEFDPCC-KIWMATNHEPIIRGTDEGIWRRIIILPFDHIIAKEDVD--PKLYDKLMSEA 666
Query: 656 K---KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD 699
W ++G Y +GLDV PE A E+ R D QA+++D
Sbjct: 667 VGILNWAVEGAIKYQLEGLDV--PESIKSAVEDYRGQMDEVQAFLED 711
>gi|325478724|gb|EGC81835.1| phage/plasmid primase, P4 family, C-terminal domain protein
[Anaerococcus prevotii ACS-065-V-Col13]
Length = 742
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 102/392 (26%), Positives = 166/392 (42%), Gaps = 28/392 (7%)
Query: 391 YRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKEL 450
Y++ V+ A E+ + I LD+ L +DL+TG+ E
Sbjct: 371 YKKYAVKRGDTRAIHATLKESKPMLEIDQRELDTDEFLLNTPSFTVDLKTGECRDHKAED 430
Query: 451 YITKSTGTPFVEGEPSQEFLD-----LVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIH 505
YITK T +PS E +D L + + + E+++Y + G++L+G + I
Sbjct: 431 YITKETSV-----DPSDENMDIWLDALETFFVKDSELIEYVQKVAGISLIGKVYIEALII 485
Query: 506 IRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIIS 565
G G +GKST N I N Y + A + N A P L G R++I +
Sbjct: 486 AYGDGRNGKSTFWNTISRVL-NLYSGSISADILTVN---SKRNAKPELAETRGKRLLIAA 541
Query: 566 ETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625
E E +N + +KQ+ D + A Y + + P S T + N V D+ WR
Sbjct: 542 ELQEGLRLNTSNVKQLCSTDEIVAEKKYRDPFKFIP-SHTLVLYTNHLPKVGALDEGTWR 600
Query: 626 RYIVIPFDKPIANRD--ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAK 683
R IVIPF+ I ++ L K KW ++G K I + +P+ A
Sbjct: 601 RLIVIPFEAKIEGSSDIKNYTDYLVDKAGGAVLKWLIEGAKKAIDEDFKFSLPKKVADAI 660
Query: 684 EEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLK 743
E ++ + ++ ++++CC+I + E+S + + Y Y + +Y R ST L
Sbjct: 661 NEYKESNNWFKHFLNECCEIDSSYEEKSGEVYQEYRAYCLRTGDYVR---STTDFYSALS 717
Query: 744 QKGFIGGIKREKIEKEWKSKRIIKGLKLKPAF 775
GF+ + I +I GLKLK F
Sbjct: 718 SNGFMRRKTNQGI--------VINGLKLKSDF 741
>gi|281419026|ref|ZP_06250043.1| phage/plasmid primase, P4 family [Clostridium thermocellum JW20]
gi|281407175|gb|EFB37436.1| phage/plasmid primase, P4 family [Clostridium thermocellum JW20]
Length = 749
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 84/310 (27%), Positives = 138/310 (44%), Gaps = 8/310 (2%)
Query: 422 LDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE-SE 480
D L Q+G+LDL++ + + IT+ + + +LD + + +
Sbjct: 396 FDKDVWLLNLQNGVLDLKSDKLYPHNPDYMITQISNASYNPSAKCPRWLDYLDKVTDGNA 455
Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540
++M Y + VG +L G + + G G +GK T + + G+ Y A+ +M
Sbjct: 456 DLMKYMQKAVGYSLTGITGEECLFILYGTGRNGKGTFAETLIHLLGS-YAKTAQVDSLML 514
Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600
+G ANP + RL G+R+V +E +N +N + IKQ+TGGD +TAR YG +
Sbjct: 515 KNVSGSG-ANPDIARLKGARVVNAAEPQKNSRLNESLIKQLTGGDMVTARFLYGKEFEYR 573
Query: 601 PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK--PIANRDASFAQKLETKYTLEAKKW 658
P F +I N + D+ W R ++PF P RD L K W
Sbjct: 574 P-EFKLWINTNYKPQISGNDEGIWSRVKLLPFTVYFPPEKRDPHLKDFLREKEIDGILNW 632
Query: 659 FLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSY 718
L+G+K + +GL ++PE A + R D Q ++DDC N + L K Y
Sbjct: 633 ALEGLKLWQKEGL--EMPETMKLATTDYRCEMDIMQKFLDDCTKPKNNSSVGALDLYKVY 690
Query: 719 SEYREQELNY 728
+ + + Y
Sbjct: 691 THWCSENGEY 700
>gi|17545558|ref|NP_518960.1| hypothetical protein RSc0839 [Ralstonia solanacearum GMI1000]
gi|17427851|emb|CAD14541.1| probable bacteriophage-related protein [Ralstonia solanacearum
GMI1000]
Length = 765
Score = 108 bits (271), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 87/289 (30%), Positives = 133/289 (46%), Gaps = 12/289 (4%)
Query: 416 SITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITK-STGTPFVEGEPSQEFLDLVS 474
+ T+D D+ L G++DL TGQ +E +TK +T TP + ++FL V+
Sbjct: 412 AATADEWDADVWALNTPGGVVDLRTGQLRAHRREDRMTKVTTATPKGDCPTWRQFLSEVT 471
Query: 475 GYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
G E+ Y R G AL G + + G G +GKS +N + G+ Y +NA
Sbjct: 472 G--GDVELQAYLQRMAGYALTGSTQEHALFFLYGTGANGKSVFVNTLATILGD-YAVNAA 528
Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
M+ R A + + L G+R V ET + +K+K +TGGD ++AR
Sbjct: 529 MDTFMETR---ADRHPTDMAGLRGARFVAAIETEQGRRWAESKVKNLTGGDKISARFMRQ 585
Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF--DKPIANRDASFAQKLETKYT 652
+ + P F F+ N +RN D+A RR +IPF P A RD + QKL +
Sbjct: 586 DFFEFFP-QFKLFVAGNHKPAIRNIDEAMKRRLHLIPFTVTVPPARRDKTLQQKLLAERD 644
Query: 653 LEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCC 701
W ++G + G +D P+ L A EE + D W+D+ C
Sbjct: 645 -GILAWAVQGCLDWQRLG-RLDPPQQVLDATEEYFEAEDALGRWLDERC 691
>gi|325526291|gb|EGD03902.1| P4 family phage/plasmid primase [Burkholderia sp. TJI49]
Length = 548
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 115/486 (23%), Positives = 201/486 (41%), Gaps = 67/486 (13%)
Query: 304 ASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMK 363
A R S+ Y + + + + +L D+ W + D+ +V L+L + + +
Sbjct: 65 AERMSELYRETLRYVCETKQWLEKQDSGVWQRVDELHV----LSLAR------KLIALIY 114
Query: 364 EDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLD 423
E++F LS N+ S + Q E N+ K+ + ++++ LD
Sbjct: 115 EEMFLLSP----GNRQSMA--------MHAQYTESNTGLKNAVDLFRSEPGIALSAKDLD 162
Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGT--------PFVEGEPSQEFLDLVSG 475
L ++G++DL++G +L+IT + P EG L +++G
Sbjct: 163 CGDWLLPVRNGLIDLQSGTFTPMRPDLHITYTAAVDYDPNATCPIWEGF----LLQIMNG 218
Query: 476 YFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535
+++Y R +G L G G +GKST +N+++ FG+ + A+A
Sbjct: 219 ---DVALVEYLRRAIGYTLTTMTSEHALFFAYGSGANGKSTFLNVLRALFGD---LGAQA 272
Query: 536 SDIMQNRPPEAG-----KANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR 590
+ M AG A+ + RLMG R+V +SE + + +K TGG+ +TAR
Sbjct: 273 NGDMLLEKNGAGGMSQNAASSEVARLMGKRLVAMSEVEDGRHFSEKTVKWYTGGEVITAR 332
Query: 591 LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK--PIANRDASFAQKLE 648
+ Y N + P F ++ N V+ D WRR +IPF P RD +KL
Sbjct: 333 MLYQNAFEFKP-RFKLWLAGNYKPTVKGSDHGIWRRMKLIPFTVTIPPEERDPDLERKLC 391
Query: 649 TKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDI---GE 705
+ W L G + + G ++ P V E R D +W+ + GE
Sbjct: 392 EELP-GILNWALAGCRQWRENGYKLNEPNVIASEVAEYRSEMDVVHSWLSEFTRDDPEGE 450
Query: 706 NLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRI 765
+ +++ KS+SE + +Y ++ LK KG+ K R+
Sbjct: 451 IHFGDTYKFFKSWSE-SQYNFSYSGNKLGRI-----LKDKGYAAAS---------KPHRV 495
Query: 766 IKGLKL 771
KGL+L
Sbjct: 496 YKGLRL 501
>gi|159039260|ref|YP_001538513.1| P4 family phage/plasmid primase [Salinispora arenicola CNS-205]
gi|159039311|ref|YP_001538564.1| P4 family phage/plasmid primase [Salinispora arenicola CNS-205]
gi|157918095|gb|ABV99522.1| phage/plasmid primase, P4 family [Salinispora arenicola CNS-205]
gi|157918146|gb|ABV99573.1| phage/plasmid primase, P4 family [Salinispora arenicola CNS-205]
Length = 874
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 84/323 (26%), Positives = 144/323 (44%), Gaps = 14/323 (4%)
Query: 420 DLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPF-VEGEPSQEFLDLVSGYFE 478
D LD+++ L GI+DL TG T+ST P + +P + L + +
Sbjct: 515 DDLDANAWELNTPAGIVDLRTGTVRAAEPAALHTRSTAVPVDLTADPGRWNEFLADTFGD 574
Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538
++E++ Y R VG +++G G GG+GK + + G+ Y A +
Sbjct: 575 NDELITYLRRLVGYSVVGHVGPHVLPFCHGSGGNGKGVFLEALAGVLGD-YATTAPVGFL 633
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598
M P + RL GSR+VI SE NE+D + AK+K +TGGD +TAR + ++
Sbjct: 634 MAQSHP---GHETEIARLAGSRMVICSEVNEDDRFDEAKVKMLTGGDSLTARFMRQDHFT 690
Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDA--SFAQKLETKYTLEAK 656
+P + +++ N VR+ ++WRR +IPF+ + L +
Sbjct: 691 FTP-THQLWLMGNHQPAVRSGGRSFWRRLRLIPFNHEVPEEKIVDDLQGILVRDHGPALL 749
Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDI--GENLWEESHSL 714
W G Y + GL P+ A E D+ ++ +CC + GE++ ++ +
Sbjct: 750 AWITAGTTQYHASGLQE--PDSVKAATAEYAHDQDSVAKFVQECCHLGGGEHVTIKTAKV 807
Query: 715 AKSYSE--YREQELNYDRKRIST 735
++Y + Y E E K + T
Sbjct: 808 REAYEQFCYAEGETPVSAKALGT 830
>gi|239904738|ref|YP_002951476.1| hypothetical protein DMR_00990 [Desulfovibrio magneticus RS-1]
gi|239794601|dbj|BAH73590.1| hypothetical protein [Desulfovibrio magneticus RS-1]
Length = 606
Score = 108 bits (270), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 112/438 (25%), Positives = 189/438 (43%), Gaps = 57/438 (13%)
Query: 304 ASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMK 363
A +F YNK F+Y ++ W D N+ W LT +M F++ +
Sbjct: 134 AQKFYRVYNK---------FFMYDHESAQWVGWD-NDKKRW-LTGRLARQLMMRFVMKLV 182
Query: 364 EDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSK------AKSTAQSLEAGSIFSI 417
++++ + +KS R R +N EE + AK+T+Q+ ++ +
Sbjct: 183 DELY----------RQAKSLR-----PLRTRNGEEVTPEEALAWAKATSQNSRKKAVLEM 227
Query: 418 TSDL---------LDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGT---PFVEGEP 465
DL LDS LG +G+LDL TG ++ EL IT+ P E
Sbjct: 228 VRDLPKVRVAKAELDSDPYLLGVANGVLDLRTGTLIENRPELRITRYASAAYRPDAEAPI 287
Query: 466 SQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF 525
Q F+ + ++++D+ G AL G K F + G G +GKSTL+ + Y
Sbjct: 288 FQGFMRQIC--LGRQDLVDFLQEVFGYALSGLIKEHAFFILVGTGANGKSTLVEIFLYLL 345
Query: 526 GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGD 585
G +Y I +++ + + R G R+ I+E N+ + + +K+ GD
Sbjct: 346 G-EYGIGMPGHAFLKS---NSRAIRNDIARWPGIRLGTIAEANDGMSFDESLLKRSVAGD 401
Query: 586 CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI-ANRDASFA 644
MTAR G Y + F+ N + D+ +RR +VIPFD A D
Sbjct: 402 VMTARF-IGKEYFDFHPVAKFFLSVNTLPKITGADNGIYRRLVVIPFDGDFQATMDRDLP 460
Query: 645 QKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIG 704
+KL+ + W ++G + ++G V P+ ++A + R DT Q+++D+CC +
Sbjct: 461 EKLKAEID-GILAWAVQGFLRWQARGHLVK-PDCVVEACKAYRAEMDTVQSFLDECCILD 518
Query: 705 ENLWEESHSLAKSYSEYR 722
N+ S L Y Y+
Sbjct: 519 PNV---STPLGVLYEAYK 533
>gi|284048433|ref|YP_003398772.1| phage/plasmid primase, P4 family [Acidaminococcus fermentans DSM
20731]
gi|283952654|gb|ADB47457.1| phage/plasmid primase, P4 family [Acidaminococcus fermentans DSM
20731]
Length = 372
Score = 108 bits (270), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 106/376 (28%), Positives = 161/376 (42%), Gaps = 26/376 (6%)
Query: 411 AGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKEL--YITKSTG-TPFVEG-EPS 466
A + ++ LD L + DL G + + ITK T +P +G E
Sbjct: 16 AKPMLALDVSELDYDPELLNTPEATYDLTQGTRGSHPHDPDDLITKITACSPGDKGMELW 75
Query: 467 QEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFG 526
QE LDL + E++ Y + VGMA +G A++ I G G +GKST N I G
Sbjct: 76 QESLDLF--FCHDRELIQYVQQIVGMAAVGRVYAEQMIIAYGGGANGKSTFWNTIARVLG 133
Query: 527 N-QYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGD 585
I+A+A + R P + L G R++I SE E +N +KQ+ D
Sbjct: 134 TYSGKISADALTMSCKR-----NVKPEMAELKGKRLIIASELEEGQRLNTGMVKQICSID 188
Query: 586 CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD--ASF 643
+ A Y + + P S T + N V DD WRR IVIPF+ I + ++
Sbjct: 189 PIEAEKKYKDPFHFVP-SHTLVLYTNYLPKVTANDDGTWRRLIVIPFNAKITGKSDIKNY 247
Query: 644 AQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDI 703
+ L KW ++G + I KG ++ P+ A E+ R+ D +++D C+I
Sbjct: 248 SDYLFEHAGPAILKWVIEGAETAIRKGFKIEEPKAVRNAVEKYREDNDWLGQFLEDHCEI 307
Query: 704 GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSK 763
+ E S L + Y Q Y R ST NL++ GF R+
Sbjct: 308 DPSFTERSGKLYQHYRVICLQSGEYIR---STTDFYGNLEKAGFFRHRTRD--------G 356
Query: 764 RIIKGLKLKPAFESVD 779
++GLKLK + +D
Sbjct: 357 SFVRGLKLKEGQDFLD 372
>gi|313898154|ref|ZP_07831693.1| phage/plasmid primase, P4 family, C-terminal domain protein
[Clostridium sp. HGF2]
gi|312957182|gb|EFR38811.1| phage/plasmid primase, P4 family, C-terminal domain protein
[Clostridium sp. HGF2]
Length = 757
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 104/391 (26%), Positives = 173/391 (44%), Gaps = 30/391 (7%)
Query: 391 YRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETG----QKVKP 446
Y++ ++ T+ E+ + I+ LD+ L + DL G ++ +P
Sbjct: 377 YQQFAIKRRDSKNITSTLKESRPMLEISPRDLDADCFALCTPEATYDLRKGMAGAREHRP 436
Query: 447 TKELYITKSTG-TPFVEGEPSQEFLDLVSGYFES-EEVMDYFTRCVGMALLGGNKAQRFI 504
E +ITK T +P +G+ Q +LD + F+S +E++DY G+A +G + I
Sbjct: 437 --EDFITKITSVSPNYKGQ--QIWLDCLDLIFQSNQELIDYVQMICGLAAIGKVYVEALI 492
Query: 505 HIRGVGGSGKSTLMNLIKYAFG-NQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVI 563
G G +GKST N I G I+A+ + R P + + G R++I
Sbjct: 493 IAYGDGRNGKSTFWNAISRVLGLYSGNISADTLTVGCRR-----NIKPEMAEVKGKRLLI 547
Query: 564 ISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAW 623
+E E +N + +KQ+ D + A Y + +S P T + N V DD
Sbjct: 548 AAEMQEGARLNDSTVKQLCSTDDVFAEKKYKDPFSFKPCH-TLVLYTNHLPRVSASDDGI 606
Query: 624 WRRYIVIPFDKPI--ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLK 681
WRR IVIPF+ I +N ++++ L W ++G K I + +PE
Sbjct: 607 WRRLIVIPFNAKITGSNDIKNYSEYLYDNAGGSILAWVIEGAKKVIESDYQIPVPECVQN 666
Query: 682 AKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLN 741
A +E R D + ++ D C++ ++ E S SL Y YR L+ + ST
Sbjct: 667 AIDEYRSQNDWFGHFLSDKCEVDQSYKESSSSL---YQAYRNYSLDCNEYVRSTADFYFA 723
Query: 742 LKQKGFIGGIKREKIEKEWKSKRIIKGLKLK 772
L++ GF E++ KR KGL+L+
Sbjct: 724 LEKAGF------ERV--TMSRKRYFKGLRLR 746
>gi|167920131|ref|ZP_02507222.1| phage/plasmid primase, P4 family protein [Burkholderia pseudomallei
BCC215]
Length = 761
Score = 108 bits (269), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 93/365 (25%), Positives = 167/365 (45%), Gaps = 28/365 (7%)
Query: 397 EENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKST 456
E N K + + ++++ LD ++G++DL+TG+ + L+IT++
Sbjct: 341 ESNKALKDAVELFRSEPGIAVSASNLDEGEWMFPAKNGLVDLQTGKFMPMDPALHITQTA 400
Query: 457 GTPFVEGE--PSQE--FLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGS 512
G F P E L++++G + E+++Y R +G L G G +
Sbjct: 401 GVNFDPDATCPRWEAFLLEIMNG---NVELVEYLRRAIGYTLTCQTSEHALFFAFGSGAN 457
Query: 513 GKSTLMNLIKYAFGNQYVINAEASD--IMQNRPPEAGKANPS---LIRLMGSRIVIISET 567
GKST +NL++ FG+ + A+A+ ++ +A +N S + RL+G R+V +SE
Sbjct: 458 GKSTFLNLLRALFGD---LGAQANGDMLLDKNGGQAMSSNASSSEVARLVGKRLVAMSEV 514
Query: 568 NENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627
E + +K TGG+ + AR+ Y N +S +P F ++ N ++ D WRR
Sbjct: 515 EEGRHFSEKTVKWYTGGEDIVARMLYQNAFSFTP-RFKLWLAGNYKPTIKGNDHGIWRRM 573
Query: 628 IVIPFDK--PIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEE 685
+IPF P RD +KL + W L G + + G + P + E
Sbjct: 574 KLIPFTVTIPPEKRDPDLERKLRDELP-GILNWALVGCQQWRDNGYKLKEPAIITNEVSE 632
Query: 686 ERQGTDTYQAWIDDCC---DIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNL 742
R D ++W+ + GE + +++ K++SE E +Y RKR+ + L
Sbjct: 633 YRGEMDVVESWLSEFTRDDPDGEIHFGDAYKFFKAWSE-AEYNFSYSRKRLG-----MIL 686
Query: 743 KQKGF 747
+ KG+
Sbjct: 687 QDKGY 691
>gi|228969624|ref|ZP_04130417.1| hypothetical protein bthur0004_62880 [Bacillus thuringiensis
serovar sotto str. T04001]
gi|228790090|gb|EEM37879.1| hypothetical protein bthur0004_62880 [Bacillus thuringiensis
serovar sotto str. T04001]
Length = 345
Score = 107 bits (268), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 93/330 (28%), Positives = 159/330 (48%), Gaps = 27/330 (8%)
Query: 448 KELYITKSTGTPFVEGEPSQEFLDLVSGYFESE-EVMDYFTRCVGMALLGGNKAQRFIHI 506
+EL +TK T F E E+L+ + F+ + E+ +Y R +G +L G Q + +
Sbjct: 6 RELGLTKITNISFDENAKCPEWLNFLDQIFQGDKELTEYMQRLIGYSLTGEITEQIMVFL 65
Query: 507 RGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISE 566
G G +GKST +N IK G +Y A++ ++ + E G AN + RL+G+R V E
Sbjct: 66 IGGGSNGKSTFINTIKDLMG-EYGKQAKSDTFIKKK--ETG-ANNDIARLVGARFVSAIE 121
Query: 567 TNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRR 626
+ E ++++ A +KQ+TGG+ + AR Y E F F N ++ D+ WRR
Sbjct: 122 SEEGEQLSEAFVKQITGGEPVLARF-LRQEYFEFIPEFKVFFTTNHKPVIKGVDEGIWRR 180
Query: 627 YIVIPFD--KPIANRDASFAQKLETKYTLEAK---KWFLKGVKAYISKGLDVDIPEVCLK 681
++PF+ P RD +KL K +LE W ++G + GL+ P + +K
Sbjct: 181 IRLVPFNLQLPKEKRD----KKLPEKISLEMPGILNWAIEGCLKWQKSGLND--PAIVMK 234
Query: 682 AKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLN 741
A + ++ D ++ +CC E++ E+ L + Y+ + ++ R
Sbjct: 235 ATGDYKEEMDILGPFMFECCFKREDVQIEAKELYEVYANWC---FKNGEHQLKNRAFYRI 291
Query: 742 LKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771
L+ +GF K E+ K+K IKG+ L
Sbjct: 292 LESQGF-------KRERGSKNKYYIKGVTL 314
>gi|119383734|ref|YP_914790.1| P4 family phage/plasmid primase [Paracoccus denitrificans PD1222]
gi|119373501|gb|ABL69094.1| phage/plasmid primase, P4 family [Paracoccus denitrificans PD1222]
Length = 612
Score = 107 bits (267), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 84/312 (26%), Positives = 138/312 (44%), Gaps = 25/312 (8%)
Query: 410 EAGSIFSITSDLLDSSSRFLGEQDGIL-------DLETG-------QKVKPTKELYITKS 455
EAG +++ + L+++ + ++G++ D E+G Q V ++ ITK
Sbjct: 207 EAGVGLAVSFERLNAAPLDVCCENGVMRFSVIPGDPESGMSPMADMQFVPHARDQLITKM 266
Query: 456 TGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKS 515
+ F ++ EV + R + Q+ + G+G +GKS
Sbjct: 267 MPVRYDPEAKRPIFDRFITRILPDPEVRRFVQRWFALNTTALTGEQKLVFFYGLGANGKS 326
Query: 516 TLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA 575
L++LI FG+ Y A + + + A P L+ LM +R+V SE E +++
Sbjct: 327 VLVDLIARMFGD-YAATARIETLTGSTKKDGSAATPDLVPLMLARMVRTSEPEEGEKLRE 385
Query: 576 AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK- 634
IKQ+TGG+ + R N+G +P F I N VR DD WRR +++PFD
Sbjct: 386 GLIKQLTGGEPINVRPNFGEQIEVTP-KFKITIQGNYRPEVRGRDDGIWRRLLIVPFDVT 444
Query: 635 -PIANRDASFAQKL--ETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTD 691
P RD KL E L W ++G+ Y+ GL P L A E R+ +D
Sbjct: 445 IPPKERDPDLGAKLWEERSGIL---NWLIEGLIDYLEGGLQE--PPAVLSATNEYREESD 499
Query: 692 TYQAWIDDCCDI 703
+++ CCD+
Sbjct: 500 PLGFFLESCCDV 511
>gi|313903458|ref|ZP_07836849.1| phage/plasmid primase, P4 family [Thermaerobacter subterraneus DSM
13965]
gi|313466279|gb|EFR61802.1| phage/plasmid primase, P4 family [Thermaerobacter subterraneus DSM
13965]
Length = 849
Score = 107 bits (267), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 115/457 (25%), Positives = 190/457 (41%), Gaps = 39/457 (8%)
Query: 307 FSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDV 366
F+D N + Y + + W D W +DK T +M + +
Sbjct: 315 FTDLGNAKRLVRRHGKNLRYCPELEKWLVYDGRR---W--VVDK-TGEVMRRAKETVQSM 368
Query: 367 FDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSS 426
+ + + D +K K ++ N+ E SK K + + + LD
Sbjct: 369 YQEAAQIADEDKRKKLVQWALNS-------ESASKLKHMVELAQTEPGIPVKPSQLDRDP 421
Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGT---PFVEGEPSQEFLDLVSGYFESEEVM 483
L +G +DL +G+ ++ ITK P + ++FL + ++ ++
Sbjct: 422 WLLNCLNGTIDLRSGELRPHRRDDLITKLVPVEYDPDAKAPLWEKFLHRIMN--GNQRLI 479
Query: 484 DYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP 543
++ R VG L G Q + G G +GKST + +++ FG+ Y AE S +
Sbjct: 480 EFLQRAVGYTLTGDTSEQVLFLLYGTGANGKSTFLEVLRSLFGD-YGQQAEFSTFLAR-- 536
Query: 544 PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPAS 603
+ + L RL+G R V +E E + IKQ+TGGD +TAR Y + PA
Sbjct: 537 -DTERVRNDLARLVGKRFVSAAEAEEGRRWSEVVIKQLTGGDTITARFLYREYFEFRPA- 594
Query: 604 FTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK--PIANRDASFAQKL--ETKYTLEAKKWF 659
++ N VR D A WRR +IPF P RD + KL E + L W
Sbjct: 595 MKLWLAANHKPRVRGTDYAIWRRLRLIPFTVTIPEGERDRDLSSKLCQELQGIL---AWA 651
Query: 660 LKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYS 719
++G ++ +GLD PEV ++A + R+ D +I+ C N + L K+Y
Sbjct: 652 VQGCLKWLDRGLDAP-PEV-MEATNQYREEQDVIAQFIEAACVPHPNTRVNATDLYKAYL 709
Query: 720 EYREQELNYDRKRISTRTVTLNLKQKGF----IGGIK 752
++ E + + +S L +KGF I G+K
Sbjct: 710 KWCE---DVGERPVSLTEFGERLNEKGFPTKKIQGLK 743
>gi|167746058|ref|ZP_02418185.1| hypothetical protein ANACAC_00753 [Anaerostipes caccae DSM 14662]
gi|167654573|gb|EDR98702.1| hypothetical protein ANACAC_00753 [Anaerostipes caccae DSM 14662]
Length = 747
Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 94/362 (25%), Positives = 147/362 (40%), Gaps = 30/362 (8%)
Query: 422 LDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFES-- 479
DS L D DL+ G + ITK T PS E +DL +S
Sbjct: 405 FDSQEFLLNAPDATYDLQDGSSKEHAAADLITKMTAVS-----PSTEGMDLWKDALDSFF 459
Query: 480 ---EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN-QYVINAEA 535
+E++DY + VG++ +G + + G G +GKST N I G I+A+A
Sbjct: 460 CCDKELIDYVQQIVGLSAIGKVYVEALVIAYGEGSNGKSTFWNTIARVLGTYSGTISADA 519
Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595
+ R P + L G R+VI +E E +N + +KQ+ D +TA Y +
Sbjct: 520 LTVGCKR-----NVKPEMAELKGKRLVIAAELEEGMRLNTSIVKQLCSTDEVTAEKKYKD 574
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD--ASFAQKLETKYTL 653
+ P + T + N V DD WRR IVIPF+ I ++A L
Sbjct: 575 PFKYVP-THTLVLYTNHLPRVGANDDGIWRRLIVIPFNAKITGSSDRKNYADYLYENAGG 633
Query: 654 EAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHS 713
W + G I + P+V A + R+ D + ++++CC++ ++S
Sbjct: 634 AVLTWIIDGAAKAIKNKYKLKTPKVVEDAINKYRENNDWFSTFVEECCEVDATYTQKSGE 693
Query: 714 LAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773
+ Y Y + Y R ST L+ GF K+ K + G++LK
Sbjct: 694 FYQEYRSYCARTGEYTR---STTDFYTALENAGF--------NRKKTKGCNYVLGIRLKS 742
Query: 774 AF 775
F
Sbjct: 743 DF 744
>gi|220920024|ref|YP_002495326.1| phage/plasmid primase, P4 family [Methylobacterium nodulans ORS
2060]
gi|219952854|gb|ACL63243.1| phage/plasmid primase, P4 family [Methylobacterium nodulans ORS
2060]
Length = 482
Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 87/312 (27%), Positives = 139/312 (44%), Gaps = 14/312 (4%)
Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVS 474
F++T++ D+ LG G +DL TG+ + + ITK T +L ++
Sbjct: 130 FAVTAETWDADRWLLGTPGGTVDLRTGRLREADQGERITKLTAVAPARLPDCPLWLAFLT 189
Query: 475 GYFESEEVMDYFTR-CVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
+E + F R G AL G + + G GG+GKS +N++ +Y A
Sbjct: 190 QATGGDEGLTRFLRQWCGYALTGTVSEHALVFVYGPGGNGKSVFLNVLTGILA-EYAKTA 248
Query: 534 EASDIMQNRPPEAGKANPS-LIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLN 592
++ G +P+ + L G+R+V SET E AKIKQ+TGGD +TAR
Sbjct: 249 AMDTFTASK----GDRHPTDMAMLRGARLVTASETEEGRPWAEAKIKQLTGGDPVTARFM 304
Query: 593 YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYT 652
+ ++ +P +F IV N +RN DDA RR+ ++PF + D KL ++
Sbjct: 305 RQDFFTFTP-TFKLTIVGNHQPLLRNVDDAARRRFNIVPFTRKPERPDPHLEAKLRAEWP 363
Query: 653 LEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE---NLWE 709
+W ++G + GL P +A E D WI D C + + + W+
Sbjct: 364 -AILRWMIEGCLDWQQNGLVR--PASVTEATEAYFAEQDLLGQWIADECVVRQGDPHCWD 420
Query: 710 ESHSLAKSYSEY 721
L S+ EY
Sbjct: 421 RIADLYASWCEY 432
>gi|255522605|ref|ZP_05389842.1| hypothetical protein LmonocFSL_15586 [Listeria monocytogenes FSL
J1-175]
Length = 540
Score = 107 bits (266), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 93/356 (26%), Positives = 162/356 (45%), Gaps = 38/356 (10%)
Query: 304 ASRFSDAYNKAM-FSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSM 362
A RF D ++ + FS KG + Y D+K W +N+ D++ + + M
Sbjct: 210 AERFRDKFHDIVRFSYINKGFYFY--DSKVW---KYDNIGAVKTLADEVIKDMKSEFAYM 264
Query: 363 KEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLL 422
+ + S+ + K+ K+ R S T EA + + +
Sbjct: 265 ENE----SDAEKAFMKHLKATR---------------SNKGKTNMLKEAQHLMPVLPEEF 305
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPF---VEGEPSQEFLDLVSGYFES 479
D FL Q+G ++L+ G+ + ++ TK + + ++ QEFL+ + FE
Sbjct: 306 DRHKYFLNTQNGYINLQNGELINHDRQKMFTKISNIEYTDKIDAPLWQEFLNDI---FEG 362
Query: 480 E-EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538
+ E+++Y + VG +L G Q + G G +GKS +++I FG+ Y N + I
Sbjct: 363 DKELINYIQKAVGYSLSGSTAEQVMFILFGNGRNGKSVFLDIINDIFGS-YATNIQPQTI 421
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598
M + ++ AN + RL G+R V +E NE ++ +KQ+TGGD +TAR Y + +
Sbjct: 422 MVKQ--QSSNANSDIARLHGARFVTTTEPNEGVRLDEGLVKQLTGGDKVTARHLYKDEFE 479
Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYT 652
+P F ++ N +R DD WRR ++PF I + D KL ++ T
Sbjct: 480 FTP-EFKIWMATNHKPIIRGRDDGIWRRLHLVPFTVKIPDEKVDKQLKYKLRSELT 534
>gi|304360923|ref|YP_003857043.1| gp71 [Mycobacterium phage CrimD]
gi|302858672|gb|ADL71417.1| gp71 [Mycobacterium phage CrimD]
Length = 872
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 134/285 (47%), Gaps = 11/285 (3%)
Query: 422 LDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESE- 480
LD+ L G++DL TG + + + + TK TG + + + ++G F +
Sbjct: 520 LDAEPYELNTPSGVVDLRTGHLLPHSPDGWHTKITGAGYNPAAVAPAWQKFLAGTFGDDV 579
Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540
E++ Y R G+A +G + G G +GKS LM+++ G+ Y I A A+ ++
Sbjct: 580 ELIGYVQRLAGLAAIGKVTHHVLPFLFGGGSNGKSVLMDVLANVLGD-YAITAPANFLLA 638
Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600
R + + RL G+R+V+ SE N + + AK+K +TGGD ++ R + + +
Sbjct: 639 GR----DRHETEIARLHGARMVVCSEINAESKFDEAKVKVLTGGDILSGRYMRQDYFDFT 694
Query: 601 PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF--DKPIANRDASFAQKLETKYTLEAKKW 658
P S T F++ N V ++WRR ++PF P R+ + A +L W
Sbjct: 695 P-SHTLFLMGNHQPQVSAGGTSFWRRLRLLPFLHTVPPEQRNPNLAAELIRDEGAAILAW 753
Query: 659 FLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDI 703
+ G + + GL P L A +E + D +I +CC++
Sbjct: 754 VVAGARQIAADGLRE--PGSVLAATKEYSEQEDALGRFISECCEL 796
>gi|27383368|ref|NP_774897.1| hypothetical protein bll8257 [Bradyrhizobium japonicum USDA 110]
gi|27356543|dbj|BAC53522.1| bll8257 [Bradyrhizobium japonicum USDA 110]
Length = 475
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 86/316 (27%), Positives = 140/316 (44%), Gaps = 18/316 (5%)
Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGT-PFVEGEPSQEFLDLV 473
F++T + D LG DG +DL TG+ ITK T T P + + L
Sbjct: 121 FAVTIEAWDRDPFLLGTPDGTVDLRTGKMRAADPADGITKLTSTAPSAQADCPLWLRFLQ 180
Query: 474 SGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
E++ + + G L G + + + G GG+GKS +N Y + Y A
Sbjct: 181 DATGGDGEMIRFLQQWCGYCLTGDTREHALVFVHGDGGNGKSVFLNTTSYIL-HDYATTA 239
Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593
+ +R + + L L G+R+V SET E ++IKQMTGGD ++AR
Sbjct: 240 SMDTFVASR---SDRHPTDLAMLRGARLVSASETEEGRAWAESRIKQMTGGDAISARFMR 296
Query: 594 GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTL 653
+ ++ P F F+V N + + D A RR+ ++PF + D ++LE K
Sbjct: 297 QDFFTFQP-QFKLFVVGNHQPALHSVDAAARRRFNIVPFTRKPTKPD----RELEAKLRG 351
Query: 654 EAK---KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDI---GENL 707
EA +W + G + + GL P ++A E DT+ W+ D C + ++
Sbjct: 352 EAPAILRWMVDGCRDWQRNGLVR--PASIVEATETYFAEQDTFGQWLKDACRVEPDNRSI 409
Query: 708 WEESHSLAKSYSEYRE 723
+ L KS+++Y E
Sbjct: 410 SDFVADLFKSWTDYAE 425
>gi|327439461|dbj|BAK15826.1| predicted ATPase [Solibacillus silvestris StLB046]
Length = 796
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 86/321 (26%), Positives = 149/321 (46%), Gaps = 17/321 (5%)
Query: 433 DGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFES-EEVMDYFTRCVG 491
+GILDL TG+ + ++L ++K F + +L+ + F+ EE++DY R +G
Sbjct: 447 NGILDLRTGKLQQHDRDLRLSKLANVEFDDNAKCPTWLNFLQQIFKGDEELIDYMQRLIG 506
Query: 492 MALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANP 551
++ G Q + G G +GKST +N+IK G+ Y + ++ ++ + AN
Sbjct: 507 YSMTGDISEQGMYFLVGGGSNGKSTFINIIKAMMGD-YGLQTKSDTFIKKKND---GANN 562
Query: 552 SLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPN 611
+ RL+GSR V E+ E +++ + +K +TGG+ + AR + +P F F N
Sbjct: 563 DIARLVGSRFVSAVESEEGEKLQESLVKTITGGEPILARFLRQEFFEFTP-EFKVFFTTN 621
Query: 612 KHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAK---KWFLKGVKAY 666
+ D+ WRR +IPF +A RD +KLE K TLE W ++G +
Sbjct: 622 HKPIIGGVDEGIWRRVKIIPFTLNLAPHQRD----KKLEEKLTLEMSGILNWAIEGCLKW 677
Query: 667 ISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQEL 726
GL P+V + A ++ D ++++ C + + Y+ Y
Sbjct: 678 QQSGLKE--PKVVVDATGNYKEEMDILGPFLEERCYMNPKDTNTKIEAKELYNIYSNWCY 735
Query: 727 NYDRKRISTRTVTLNLKQKGF 747
+ IS R+ L+ KGF
Sbjct: 736 AAGERSISNRSFYRMLETKGF 756
>gi|304360825|ref|YP_003856946.1| gp68 [Mycobacterium phage Angelica]
gi|302858409|gb|ADL71157.1| gp68 [Mycobacterium phage Angelica]
Length = 872
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 76/285 (26%), Positives = 134/285 (47%), Gaps = 11/285 (3%)
Query: 422 LDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESE- 480
LD+ L G++DL TG + + + + TK TG + + + ++G F +
Sbjct: 520 LDAEPYELNTPSGVVDLRTGHLLPHSPDGWHTKITGAGYNPAAVAPAWQKFLAGTFGDDV 579
Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540
E++ Y R G+A +G + G G +GKS LM+++ G+ Y I A A+ ++
Sbjct: 580 ELIGYVQRLAGLAAIGKVTHHVLPFLFGGGSNGKSVLMDVLANVLGD-YAITAPANFLLA 638
Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600
R + + RL G+R+V+ SE N + + AK+K +TGGD ++ R + + +
Sbjct: 639 GR----DRHETEIARLHGARMVVCSEINAESKFDEAKVKVLTGGDILSGRYMRQDYFDFT 694
Query: 601 PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF--DKPIANRDASFAQKLETKYTLEAKKW 658
P S T F++ N V ++WRR ++PF P R+ + A +L W
Sbjct: 695 P-SHTLFLMGNHQPQVSAGGTSFWRRLRLLPFLHTVPPEQRNPNLAAELIRDEGAAILAW 753
Query: 659 FLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDI 703
+ G + + GL P L A +E + D +I +CC++
Sbjct: 754 VVAGARQIAADGLRE--PGSVLAATKEYSEQEDALGRFISECCEL 796
>gi|317501095|ref|ZP_07959301.1| prophage protein [Lachnospiraceae bacterium 8_1_57FAA]
gi|316897482|gb|EFV19547.1| prophage protein [Lachnospiraceae bacterium 8_1_57FAA]
Length = 757
Score = 106 bits (265), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 98/369 (26%), Positives = 163/369 (44%), Gaps = 26/369 (7%)
Query: 410 EAGSIFSITSDLLDSSSRFLGEQDGILDLETGQK--VKPTKELYITKSTG-TPFVEGEPS 466
E + I+ LD+ L + DL G + + + +ITK T +P +G
Sbjct: 396 ETHPMLEISPRDLDADCFLLCTPEATYDLRKGMAGAREHSADDFITKITSVSPGSKGAQL 455
Query: 467 -QEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF 525
Q+ LDL+ + + ++++DY G+A +G + I G G +GKST N I
Sbjct: 456 WQDNLDLI--FQKDQQLIDYVQMICGLAAIGKVFVEALIIAYGDGRNGKSTFWNAISRVL 513
Query: 526 G-NQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGG 584
G I+A+ + R P + + G R++I +E E +N + +KQ+
Sbjct: 514 GLYSGNISADTLTVGCRR-----NIKPEMAEVKGKRLLIAAEMQEGARLNDSTVKQLCST 568
Query: 585 DCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD--AS 642
D + A Y + +S P T + N V DD WRR IVIPF+ I + +
Sbjct: 569 DDVFAEKKYKDPFSFKPCH-TLVLYTNHLPRVSASDDGIWRRLIVIPFNAKIEGKADIKN 627
Query: 643 FAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCD 702
+ + L W ++G K I+ + +P+ KA +E R D + ++D+ CD
Sbjct: 628 YGEYLYENAGESILAWIIEGAKKVIALDYQIPVPDCVTKAIDEYRSQNDWFGHFLDEKCD 687
Query: 703 IGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKS 762
+ E+ E S +L Y YR L+ + ST L++ GF +R + +
Sbjct: 688 VDESFKESSSAL---YQAYRNYSLDCNEYVRSTADFYFALEKAGF----ERLTLNR---- 736
Query: 763 KRIIKGLKL 771
KR KGLK+
Sbjct: 737 KRYFKGLKI 745
>gi|313114054|ref|ZP_07799607.1| nucleoside triphosphatase, D5 family [Faecalibacterium cf.
prausnitzii KLE1255]
gi|310623624|gb|EFQ07026.1| nucleoside triphosphatase, D5 family [Faecalibacterium cf.
prausnitzii KLE1255]
Length = 799
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 84/333 (25%), Positives = 148/333 (44%), Gaps = 17/333 (5%)
Query: 422 LDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGT---PFVEGEPSQEFLDLVSGYFE 478
D + L ++GIL+L + V + YIT+ P + + F+ V+G
Sbjct: 422 FDRNKGLLNLRNGILNLARRELVPHDRARYITRMAQVDYDPAAQAPVWEAFIQSVTG--G 479
Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538
++ +Y VG L G + Q + G G +GKST + + G+ Y +NA+A I
Sbjct: 480 DAQLAEYLQVMVGYCLCGSTREQCMFFLYGDGANGKSTFLETLAKMLGD-YCMNAQADTI 538
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598
R +G A + RL G+R V + E ++ ++ +KQMTGG+ +TAR YG +
Sbjct: 539 ASTRSRSSGAARSDVARLKGARFVTLEEGDQGATLDEGLVKQMTGGNTITARFQYGKEFE 598
Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK--PIANRDASFAQKLETKYTLEAK 656
P F N + D WRR ++PF + P +D QKLE +
Sbjct: 599 FRP-EFKLVEATNHLPKIHGTDVGIWRRIRLVPFTQSIPEEKQDILLPQKLEAELP-GIL 656
Query: 657 KWFLKGVKAYISK---GLDVDIPEVCL--KAKEEERQGTDTYQAWIDDCCDIGENLWEES 711
W L G++ +++ G +P A +Q D A++ DC + E ++
Sbjct: 657 NWALDGLQKWLANSQGGRRHGLPACAAVDSAVSAYKQDQDRIAAFLADCTEPAEGSTVQA 716
Query: 712 HSLAKSYSEYREQELNYDRKRISTRTVTLNLKQ 744
L ++Y + + N ++ R++ + + +K+
Sbjct: 717 SVLFRTYLNWCSE--NNEKWRMANKQFGMEVKK 747
>gi|326791702|ref|YP_004309523.1| phage/plasmid primase, P4 family [Clostridium lentocellum DSM 5427]
gi|326542466|gb|ADZ84325.1| phage/plasmid primase, P4 family [Clostridium lentocellum DSM 5427]
Length = 730
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 105/426 (24%), Positives = 172/426 (40%), Gaps = 31/426 (7%)
Query: 306 RFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKED 365
R D N +I K + D WY N + +D + + M D
Sbjct: 277 RLDDTDNAHTMAIMYKDRLCFAYDMNKWYLY--NGIKWEEDRVDGVRILAGKMIERMGHD 334
Query: 366 -VFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSL--EAGSIFSITSDLL 422
LS+ PE K ++ F +N + N ++ S+ E + I S
Sbjct: 335 FALILSKMPEGREKKKQT--FLYNMHLK------NCRSYRGKSSILNETKHLLPIVSTHF 386
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESE-E 481
+ + +G D+ Q + Y+++ T +VE + + + F + E
Sbjct: 387 NQPRHLINMPNGTYDINDKQLKEHRATDYLSQVTNVAYVENIAAPNWEKFIKQIFLGDRE 446
Query: 482 VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQN 541
+M Y + +G +L G Q G G +GK +++ Y N YV +A I Q
Sbjct: 447 LMRYVQKAIGYSLTGFTHEQCMFIGYGDGANGKGVFKDILSYIL-NDYVKCPQAETISQI 505
Query: 542 RPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESP 601
R + +A+P +I LM +R+V+ E+N+ N IKQ+TG D +TAR Y P
Sbjct: 506 R--QGSEASPDIINLMDARLVVCVESNKGVRFNEGLIKQLTGEDKVTARRLYC-----EP 558
Query: 602 ASFTP----FIVPNKHLFVRNPDDAWWRRYIVIPF--DKPIANRDASFAQKLETKYTLEA 655
SF P ++ N V D WRR VIPF D P +D +KL K
Sbjct: 559 TSFLPQFKLWLFTNHMPEVVGTDKGIWRRLKVIPFKLDLPEEKKDKHLKEKL-MKEVGGI 617
Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLA 715
W ++G+ Y+ +GL P + E ++ +DT ++ +C E ++ L
Sbjct: 618 LWWCIQGIHLYLEEGLKE--PPAVINLVHEFKEESDTLGLFLKECTIHKEGSKVQAKDLY 675
Query: 716 KSYSEY 721
Y E+
Sbjct: 676 TKYVEW 681
>gi|190573868|ref|YP_001971713.1| hypothetical protein Smlt1886 [Stenotrophomonas maltophilia K279a]
gi|190011790|emb|CAQ45410.1| putative phage-related protein [Stenotrophomonas maltophilia K279a]
Length = 766
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 96/350 (27%), Positives = 155/350 (44%), Gaps = 22/350 (6%)
Query: 416 SITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITK-STGTPFVEGEPSQEFLDLVS 474
+ T+D D+ L G++DL+TG++ + +TK +T TP E +F+D V+
Sbjct: 413 AATTDEWDADPWLLNTPGGVVDLKTGRQRPHERADRMTKVTTATPSGECPTWLQFIDEVT 472
Query: 475 GYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
G + + Y R VG AL G + + G G +GKS +N + G+ Y NA
Sbjct: 473 G--GDQALQAYLQRMVGYALTGATQEHALFFLYGTGANGKSVFVNTLATILGD-YATNAP 529
Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
M+ R + + L G+R V ET + +K+K +TGGD ++AR
Sbjct: 530 MDTFMETR---TDRHPTDMAGLRGARFVAAIETEQGRRWAESKVKNLTGGDKISARFMRQ 586
Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF--DKPIANRDASFAQKLETKYT 652
+ + P F F+ N +RN D+A RR +IPF P RD QKL +
Sbjct: 587 DFFEFFP-QFKLFVAGNHKPAIRNIDEAMKRRLHLIPFTITVPPERRDKHLQQKLLAERD 645
Query: 653 LEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESH 712
W ++G + G +D P+ ++A EE + D W+D+ C N +
Sbjct: 646 -GILAWAVQGCLDWQRHGR-LDPPQRVVEATEEYFEAEDALGRWLDERCVREANAKSLTA 703
Query: 713 SLAKSYSEYREQ--ELNYDRKRISTRTVTLNLKQ-------KGFIG-GIK 752
L + ++ E E +KR + +T L + +GF G G+K
Sbjct: 704 ELFNDWKQWAEAAGEFTGSQKRFADLLLTRGLDKWRNGMGLRGFQGLGLK 753
>gi|304439202|ref|ZP_07399120.1| P4 family prophage LambdaSa04 [Peptoniphilus duerdenii ATCC
BAA-1640]
gi|304372334|gb|EFM25922.1| P4 family prophage LambdaSa04 [Peptoniphilus duerdenii ATCC
BAA-1640]
Length = 742
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 104/392 (26%), Positives = 165/392 (42%), Gaps = 28/392 (7%)
Query: 391 YRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKEL 450
Y++ V+ A E+ + I LD+ L +DL+TG+ E
Sbjct: 371 YKKYAVKRGDTRAIHATLKESKPMLEIDQRELDTDEFLLNTPSYTVDLKTGECRDHKAED 430
Query: 451 YITKSTGTPFVEGEPSQEFLD-----LVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIH 505
Y+TK T +PS E +D L + + + E+++Y + G++L+G + I
Sbjct: 431 YLTKETSV-----DPSDENIDIWIDALNTFFVKDSELIEYVQKVAGISLIGKVYIEALII 485
Query: 506 IRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIIS 565
G G +GKST N I N Y + A + N A P L G R++I +
Sbjct: 486 AYGDGRNGKSTFWNTISRVL-NLYSGSISADILTVNSKR---NAKPELAETRGKRLLIAA 541
Query: 566 ETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625
E E +N + +KQ+ D + A Y + + P S T + N V D+ WR
Sbjct: 542 ELQEGLRLNTSNVKQLCSTDEIVAEKKYRDPFKFIP-SHTLVLYTNHLPKVGALDEGTWR 600
Query: 626 RYIVIPFDKPIANRD--ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAK 683
R IVIPF+ I ++ L K KW ++G K I + +P+ A
Sbjct: 601 RLIVIPFEAKIEGSSDIKNYTDYLVDKAGGAVLKWLIEGAKKAIDEDFKFSLPKKVADAI 660
Query: 684 EEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLK 743
E ++ + ++ ++++CC+I + E+S + Y EYR L ST L
Sbjct: 661 NEYKESNNWFKHFLNECCEIDSSYEEKSGEV---YQEYRAYCLRIGDYVRSTTDFYSALS 717
Query: 744 QKGFIGGIKREKIEKEWKSKRIIKGLKLKPAF 775
GF R K+ K I+GLKLK F
Sbjct: 718 SNGF----NRVKLRDGIK----IQGLKLKSDF 741
>gi|15608720|ref|NP_216098.1| phiRv1 phage protein [Mycobacterium tuberculosis H37Rv]
gi|148661377|ref|YP_001282900.1| putative phiRv1 phage protein [Mycobacterium tuberculosis H37Ra]
gi|167966959|ref|ZP_02549236.1| bacteriophage protein [Mycobacterium tuberculosis H37Ra]
gi|215428058|ref|ZP_03425977.1| bacteriophage protein [Mycobacterium tuberculosis T92]
gi|215430474|ref|ZP_03428393.1| bacteriophage protein [Mycobacterium tuberculosis EAS054]
gi|260186531|ref|ZP_05764005.1| bacteriophage protein [Mycobacterium tuberculosis CPHL_A]
gi|260200642|ref|ZP_05768133.1| bacteriophage protein [Mycobacterium tuberculosis T46]
gi|289443035|ref|ZP_06432779.1| phi phage protein [Mycobacterium tuberculosis T46]
gi|289447191|ref|ZP_06436935.1| phiRv1 phage protein [Mycobacterium tuberculosis CPHL_A]
gi|289751280|ref|ZP_06510658.1| phiRv1 phage protein [Mycobacterium tuberculosis T92]
gi|289753669|ref|ZP_06513047.1| phiRv1 phage protein [Mycobacterium tuberculosis EAS054]
gi|306775768|ref|ZP_07414105.1| phage/plasmid primase, P4 family, C- domain protein [Mycobacterium
tuberculosis SUMu001]
gi|306805291|ref|ZP_07441959.1| phage/plasmid primase, P4 family, C- domain protein [Mycobacterium
tuberculosis SUMu008]
gi|306971876|ref|ZP_07484537.1| phage/plasmid primase, P4 family, C- domain protein [Mycobacterium
tuberculosis SUMu010]
gi|2117255|emb|CAB09087.1| Probable phiRv1 phage protein [Mycobacterium tuberculosis H37Rv]
gi|148505529|gb|ABQ73338.1| putative phiRv1 phage protein [Mycobacterium tuberculosis H37Ra]
gi|289415954|gb|EFD13194.1| phi phage protein [Mycobacterium tuberculosis T46]
gi|289420149|gb|EFD17350.1| phiRv1 phage protein [Mycobacterium tuberculosis CPHL_A]
gi|289691867|gb|EFD59296.1| phiRv1 phage protein [Mycobacterium tuberculosis T92]
gi|289694256|gb|EFD61685.1| phiRv1 phage protein [Mycobacterium tuberculosis EAS054]
gi|308215857|gb|EFO75256.1| phage/plasmid primase, P4 family, C- domain protein [Mycobacterium
tuberculosis SUMu001]
gi|308348162|gb|EFP37013.1| phage/plasmid primase, P4 family, C- domain protein [Mycobacterium
tuberculosis SUMu008]
gi|308358730|gb|EFP47581.1| phage/plasmid primase, P4 family, C- domain protein [Mycobacterium
tuberculosis SUMu010]
gi|323717855|gb|EGB27045.1| phiRv1 phage protein [Mycobacterium tuberculosis CDC1551A]
Length = 471
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 98/342 (28%), Positives = 155/342 (45%), Gaps = 21/342 (6%)
Query: 393 RQNVEENSKAKSTAQSLEAGSI---FSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKE 449
R +V + A A L+ + F+ T LDS L +G LDL T K++P
Sbjct: 98 RADVRKCESASGVAGVLDLAAALVPFAATVADLDSDPHLLNVANGTLDLHT-LKLRPHAP 156
Query: 450 L-YITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRG 508
ITK + S + ++ E V + R G+ LLG + + G
Sbjct: 157 ADRITKICRGAYQSDTESPLWQAFLTRVLPDEGVRGFVQRLAGVGLLGTVREHVLAILIG 216
Query: 509 VGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS-LIRLMGSRIVIISET 567
VG +GKS I+YA G+ Y AE D+ +R A+P+ + L G R V +SE+
Sbjct: 217 VGANGKSVFDKAIRYALGD-YACTAE-PDLFMHRE----NAHPTGEMDLRGVRWVAVSES 270
Query: 568 NENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627
++ + + IK++TGGD + AR + E S TP ++ N V D A WRR
Sbjct: 271 EKDRRLAESTIKRLTGGDTIRAR-KMRQDFVEFTPSHTPLLITNHLPRVPGDDTAIWRRI 329
Query: 628 IVIPFDKPIANRDASFAQKLETKYTLEAK---KWFLKGVKAYISKGLDVDIPEVCLKAKE 684
V+PF+ I + ++L+ + LEA W + G Y GL P+ L A
Sbjct: 330 RVVPFEVVIPADEQD--RELDARLQLEADSILSWAVAGWSDYQRIGLSQ--PDAVLAATS 385
Query: 685 EERQGTDTYQAWIDDCCDIGENLWEESHS-LAKSYSEYREQE 725
R+ +DT + +IDD C + + + + L +++ +R QE
Sbjct: 386 NYREDSDTIKRFIDDECVTSSPVLKATTTHLFEAWQRWRVQE 427
>gi|15843066|ref|NP_338103.1| bacteriophage protein [Mycobacterium tuberculosis CDC1551]
gi|308376126|ref|ZP_07446144.2| phage/plasmid primase, P4 family, C- domain protein [Mycobacterium
tuberculosis SUMu007]
gi|308380119|ref|ZP_07669121.1| phage/plasmid primase, P4 family, C- domain protein [Mycobacterium
tuberculosis SUMu011]
gi|308400808|ref|ZP_07493275.2| phage/plasmid primase, P4 family, C- domain protein [Mycobacterium
tuberculosis SUMu012]
gi|13883410|gb|AAK47917.1| bacteriophage protein [Mycobacterium tuberculosis CDC1551]
gi|308344231|gb|EFP33082.1| phage/plasmid primase, P4 family, C- domain protein [Mycobacterium
tuberculosis SUMu007]
gi|308362562|gb|EFP51413.1| phage/plasmid primase, P4 family, C- domain protein [Mycobacterium
tuberculosis SUMu011]
gi|308366214|gb|EFP55065.1| phage/plasmid primase, P4 family, C- domain protein [Mycobacterium
tuberculosis SUMu012]
Length = 472
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 98/342 (28%), Positives = 155/342 (45%), Gaps = 21/342 (6%)
Query: 393 RQNVEENSKAKSTAQSLEAGSI---FSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKE 449
R +V + A A L+ + F+ T LDS L +G LDL T K++P
Sbjct: 99 RADVRKCESASGVAGVLDLAAALVPFAATVADLDSDPHLLNVANGTLDLHT-LKLRPHAP 157
Query: 450 L-YITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRG 508
ITK + S + ++ E V + R G+ LLG + + G
Sbjct: 158 ADRITKICRGAYQSDTESPLWQAFLTRVLPDEGVRGFVQRLAGVGLLGTVREHVLAILIG 217
Query: 509 VGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS-LIRLMGSRIVIISET 567
VG +GKS I+YA G+ Y AE D+ +R A+P+ + L G R V +SE+
Sbjct: 218 VGANGKSVFDKAIRYALGD-YACTAE-PDLFMHRE----NAHPTGEMDLRGVRWVAVSES 271
Query: 568 NENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627
++ + + IK++TGGD + AR + E S TP ++ N V D A WRR
Sbjct: 272 EKDRRLAESTIKRLTGGDTIRAR-KMRQDFVEFTPSHTPLLITNHLPRVPGDDTAIWRRI 330
Query: 628 IVIPFDKPIANRDASFAQKLETKYTLEAK---KWFLKGVKAYISKGLDVDIPEVCLKAKE 684
V+PF+ I + ++L+ + LEA W + G Y GL P+ L A
Sbjct: 331 RVVPFEVVIPADEQD--RELDARLQLEADSILSWAVAGWSDYQRIGLSQ--PDAVLAATS 386
Query: 685 EERQGTDTYQAWIDDCCDIGENLWEESHS-LAKSYSEYREQE 725
R+ +DT + +IDD C + + + + L +++ +R QE
Sbjct: 387 NYREDSDTIKRFIDDECVTSSPVLKATTTHLFEAWQRWRVQE 428
>gi|194100701|ref|YP_002003450.1| gp92 [Mycobacterium phage Predator]
gi|192758417|gb|ACF05189.1| gp92 [Mycobacterium phage Predator]
Length = 987
Score = 106 bits (264), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 91/304 (29%), Positives = 147/304 (48%), Gaps = 33/304 (10%)
Query: 417 ITSDL--LDSSSRFLGEQDGILDL---ETGQKVKPTKELYITKSTGTPFVEGEPS----- 466
+T D+ LD+ R +G +G+L+L E ++ ++L IT +T TP++E E
Sbjct: 590 VTVDINDLDNDGRLIGVANGVLELGVDEVRRRDAEARDL-ITLNTSTPYLEIEDMTGTQK 648
Query: 467 ------QEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNL 520
QE+L+ + EE+ +G L+GGN + FI ++G +GKST+ NL
Sbjct: 649 IGVEKWQEYLER---FLPDEEIRRTAQVALGHCLIGGNPEKIFIILKGESNTGKSTMANL 705
Query: 521 IKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQ 580
A G+ Y + A S I QN K NP L + + R+V+ +E +E D+I+A+ +K+
Sbjct: 706 CAAALGD-YAMTAGLS-IYQNH-----KLNPMLAKALTRRMVVTTELSETDKISASMLKR 758
Query: 581 MTGG-DCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR 639
+TGG D ++A L N E F P + N + D A R VIPF+ ++ +
Sbjct: 759 ITGGSDLISAELKGSNVLVERVPQFVPIVATNAVPDIEGADKALRNRLYVIPFNVVVSEQ 818
Query: 640 --DASFAQKLETKYTLEAKKWFLKGVKAY-ISKGLDVDIPEVCLKAKEEERQGTDTYQAW 696
D A ++ W ++G K Y KGL D P + +K + DT +
Sbjct: 819 EDDKEAAMIMKAVGLPAILNWLVEGYKIYRREKGLPKD-PRI-IKESDAFAAELDTVSTF 876
Query: 697 IDDC 700
+D C
Sbjct: 877 VDQC 880
>gi|31792768|ref|NP_855261.1| phiRv1 phage protein [Mycobacterium bovis AF2122/97]
gi|31618358|emb|CAD96276.1| Probable phiRv1 phage protein [Mycobacterium bovis AF2122/97]
Length = 471
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 98/342 (28%), Positives = 155/342 (45%), Gaps = 21/342 (6%)
Query: 393 RQNVEENSKAKSTAQSLEAGSI---FSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKE 449
R +V + A A L+ + F+ T LDS L +G LDL T K++P
Sbjct: 98 RADVRKCESASGVAGVLDLAAALVPFAATLADLDSDPHLLNVANGTLDLHT-LKLRPHAP 156
Query: 450 L-YITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRG 508
ITK + S + ++ E V + R G+ LLG + + G
Sbjct: 157 ADRITKICRGAYQSDTESPLWQAFLTRVLPDEGVRGFVQRLAGVGLLGTVREHVLAILIG 216
Query: 509 VGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS-LIRLMGSRIVIISET 567
VG +GKS I+YA G+ Y AE D+ +R A+P+ + L G R V +SE+
Sbjct: 217 VGANGKSVFDKAIRYALGD-YACTAE-PDLFMHRE----NAHPTGEMDLRGVRWVAVSES 270
Query: 568 NENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627
++ + + IK++TGGD + AR + E S TP ++ N V D A WRR
Sbjct: 271 EKDRRLAESTIKRLTGGDTIRAR-KMRQDFVEFTPSHTPLLITNHLPRVPGDDTAIWRRI 329
Query: 628 IVIPFDKPIANRDASFAQKLETKYTLEAK---KWFLKGVKAYISKGLDVDIPEVCLKAKE 684
V+PF+ I + ++L+ + LEA W + G Y GL P+ L A
Sbjct: 330 RVVPFEVVIPADEQD--RELDARLQLEADSILSWAVAGWSDYQRIGLSQ--PDAVLAATS 385
Query: 685 EERQGTDTYQAWIDDCCDIGENLWEESHS-LAKSYSEYREQE 725
R+ +DT + +IDD C + + + + L +++ +R QE
Sbjct: 386 NYREDSDTIKRFIDDECVTSSPVLKATTTHLFEAWQRWRVQE 427
>gi|85715547|ref|ZP_01046528.1| hypothetical protein NB311A_17619 [Nitrobacter sp. Nb-311A]
gi|85697742|gb|EAQ35618.1| hypothetical protein NB311A_17619 [Nitrobacter sp. Nb-311A]
Length = 462
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 93/319 (29%), Positives = 149/319 (46%), Gaps = 29/319 (9%)
Query: 416 SITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGT-PFVEGEPS-QEFLDLV 473
++T+ D LG G +DL+TG +P ++ ITK+T P + P + FL+
Sbjct: 110 AVTASYWDRDPWKLGTPGGTVDLQTGILHEPRQDEGITKATSVAPLDQDCPLWKRFLNEA 169
Query: 474 SGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
+ +++ + + G L G + + G GG+GKS +N++ + N Y A
Sbjct: 170 TR--GDVDLIRFLRQWCGYCLTGITREHALAFVHGSGGNGKSVFINIVT-SIMNDYATTA 226
Query: 534 EASDIMQNRPPEAGK--ANPS-LIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR 590
AGK +P+ L L G+RIV SET E A+IKQMTGGD +TAR
Sbjct: 227 AMETF------SAGKYAQHPTDLAMLRGARIVTASETEEGRAWAEARIKQMTGGDPITAR 280
Query: 591 LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETK 650
+ ++ P F I+ N + + DDA RR+ +I P+ + + + LE K
Sbjct: 281 FMRQDFFTFKP-QFKLTIIGNHQPVLHSVDDAARRRFNII----PVIHSPETPDRDLERK 335
Query: 651 YTLEAK---KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDI---- 703
+EA +W ++G + GL PE A D W++DCC++
Sbjct: 336 LMIEAPAILQWMIEGCLDWQRNGLCR--PESVNAATAAYFSDQDLMGQWLEDCCEVKKDR 393
Query: 704 GEN-LWEESHSLAKSYSEY 721
G N +W+ S L +S++EY
Sbjct: 394 GPNGIWDRSSDLFESWAEY 412
>gi|308370271|ref|ZP_07420875.2| phage/plasmid primase, P4 family, C- domain protein [Mycobacterium
tuberculosis SUMu002]
gi|308378333|ref|ZP_07482245.2| phage/plasmid primase, P4 family, C- domain protein [Mycobacterium
tuberculosis SUMu009]
gi|308324799|gb|EFP13650.1| phage/plasmid primase, P4 family, C- domain protein [Mycobacterium
tuberculosis SUMu002]
gi|308352847|gb|EFP41698.1| phage/plasmid primase, P4 family, C- domain protein [Mycobacterium
tuberculosis SUMu009]
Length = 501
Score = 105 bits (263), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 98/342 (28%), Positives = 155/342 (45%), Gaps = 21/342 (6%)
Query: 393 RQNVEENSKAKSTAQSLEAGSI---FSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKE 449
R +V + A A L+ + F+ T LDS L +G LDL T K++P
Sbjct: 128 RADVRKCESASGVAGVLDLAAALVPFAATVADLDSDPHLLNVANGTLDLHT-LKLRPHAP 186
Query: 450 L-YITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRG 508
ITK + S + ++ E V + R G+ LLG + + G
Sbjct: 187 ADRITKICRGAYQSDTESPLWQAFLTRVLPDEGVRGFVQRLAGVGLLGTVREHVLAILIG 246
Query: 509 VGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS-LIRLMGSRIVIISET 567
VG +GKS I+YA G+ Y AE D+ +R A+P+ + L G R V +SE+
Sbjct: 247 VGANGKSVFDKAIRYALGD-YACTAE-PDLFMHRE----NAHPTGEMDLRGVRWVAVSES 300
Query: 568 NENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627
++ + + IK++TGGD + AR + E S TP ++ N V D A WRR
Sbjct: 301 EKDRRLAESTIKRLTGGDTIRAR-KMRQDFVEFTPSHTPLLITNHLPRVPGDDTAIWRRI 359
Query: 628 IVIPFDKPIANRDASFAQKLETKYTLEAK---KWFLKGVKAYISKGLDVDIPEVCLKAKE 684
V+PF+ I + ++L+ + LEA W + G Y GL P+ L A
Sbjct: 360 RVVPFEVVIPADEQD--RELDARLQLEADSILSWAVAGWSDYQRIGLSQ--PDAVLAATS 415
Query: 685 EERQGTDTYQAWIDDCCDIGENLWEESHS-LAKSYSEYREQE 725
R+ +DT + +IDD C + + + + L +++ +R QE
Sbjct: 416 NYREDSDTIKRFIDDECVTSSPVLKATTTHLFEAWQRWRVQE 457
>gi|315656932|ref|ZP_07909819.1| P4 family prophage LambdaSa04 [Mobiluncus curtisii subsp. holmesii
ATCC 35242]
gi|315492887|gb|EFU82491.1| P4 family prophage LambdaSa04 [Mobiluncus curtisii subsp. holmesii
ATCC 35242]
Length = 753
Score = 105 bits (262), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 89/349 (25%), Positives = 156/349 (44%), Gaps = 16/349 (4%)
Query: 405 TAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTG-TPFVEG 463
TA EAG I + LD L G DL G + +TK T +P EG
Sbjct: 395 TATLKEAGPILQVRIRDLDVDPYQLNTPAGTWDLRDGTSHEHNPADLLTKQTAVSPSDEG 454
Query: 464 EPSQEFLDLVSGYFESE-EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIK 522
+Q + D + +F+ + E++ Y R VG+A +G + + G G +GKST N I
Sbjct: 455 --AQIWADALDVFFQGDPELISYVQRIVGLAAIGQVFVEALVIAYGDGRNGKSTFWNTIA 512
Query: 523 YAFGN-QYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM 581
G I+A+A + R P L G R++I +ET E ++ + +KQ+
Sbjct: 513 RVLGTYSGTISADALTVGVRR-----NVKPELAEARGKRLLIAAETEEGMRLSTSNVKQL 567
Query: 582 TGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI-ANRD 640
D ++A + + ++ +P S T + N V D WRR IVIPF+ I + D
Sbjct: 568 ASTDQISAEKKFKDPFAFTP-SHTLVLYTNHLPRVGAMDAGIWRRLIVIPFNATIEGDTD 626
Query: 641 A-SFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD 699
++A L W ++G + ++G + P ++A + ++ D + +++D
Sbjct: 627 VKNYADHLFENAGGAILTWIMEGARLIHAEGYKLKAPPQVVQASQAYKEDNDWFSQFLED 686
Query: 700 CCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFI 748
CD+ + L E + L ++Y + + + R + ++Q GF+
Sbjct: 687 SCDVEDGLSERAGDLYQTYRAWAQNTSGWARPMVDFNAA---VEQAGFV 732
>gi|323693308|ref|ZP_08107526.1| phage DNA polymerase [Clostridium symbiosum WAL-14673]
gi|323502791|gb|EGB18635.1| phage DNA polymerase [Clostridium symbiosum WAL-14673]
Length = 757
Score = 105 bits (261), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 101/389 (25%), Positives = 171/389 (43%), Gaps = 26/389 (6%)
Query: 391 YRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQK--VKPTK 448
Y++ V+ T+ E+ + I+ LD+ + + DL G +
Sbjct: 377 YQQFAVKRRDSKNITSTLKESRPMLEISPRDLDADCFAMCTPEATYDLRKGMAGAREHLP 436
Query: 449 ELYITKSTG-TPFVEGEPSQEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHI 506
E +ITK T +P +G+ Q +LD + F+ ++E++DY G+A +G + I
Sbjct: 437 EDFITKITSVSPNYKGQ--QIWLDCLDLIFQGNQELIDYVQMICGLAAIGKVYVEALIIA 494
Query: 507 RGVGGSGKSTLMNLIKYAFG-NQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIIS 565
G G +GKST N I G I+A+ + R P + + G R++I +
Sbjct: 495 YGDGRNGKSTFWNAISRVLGLYSGNISADTLTVGCRR-----NIKPEMAEVKGKRLLIAA 549
Query: 566 ETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625
E E +N + +KQ+ D + A Y + +S P T + N V DD WR
Sbjct: 550 EMQEGARLNDSTVKQLCSTDDVFAEKKYKDPFSFKPCH-TLVLYTNHLPRVSASDDGIWR 608
Query: 626 RYIVIPFDKPIANRD--ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAK 683
R IVIPF+ I + ++++ L W ++G K I + +P++ KA
Sbjct: 609 RLIVIPFNAKITDSSDIKNYSEYLYDNAGGSILAWVIEGAKKVIESDYQIPVPDLVQKAI 668
Query: 684 EEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLK 743
+E R D + ++ D C++ + E S SL Y YR L+ + ST L+
Sbjct: 669 DEYRSQNDWFGHFLADKCEVDPSYKESSSSL---YQAYRNYSLDCNEYVRSTADFYFALE 725
Query: 744 QKGFIGGIKREKIEKEWKSKRIIKGLKLK 772
+ GF +R + + KR KGL+L+
Sbjct: 726 KAGF----ERITVSR----KRYFKGLRLR 746
>gi|299067595|emb|CBJ38799.1| putative DNA primase, phage/plasmid [Ralstonia solanacearum CMR15]
Length = 765
Score = 104 bits (260), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 95/322 (29%), Positives = 142/322 (44%), Gaps = 18/322 (5%)
Query: 387 FNTDYRRQNVEENSKAKSTAQSLEAGSI----FSITSDLLDSSSRFLGEQDGILDLETGQ 442
F D RQ + S ST S+E S + T+D D+ L G++DL TGQ
Sbjct: 381 FKADTPRQKAKLASS--STIASVEKISRSDPKHAATADEWDADVWALNTPGGVVDLRTGQ 438
Query: 443 KVKPTKELYITK-STGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQ 501
+E +TK +T TP + ++FL V+G E+ Y R G AL G +
Sbjct: 439 LRAHRREDRMTKITTATPGGDCPTWRQFLAEVTG--GDAELQAYLQRMAGYALTGSTQEH 496
Query: 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRI 561
+ G G +GKS +N + G+ Y +NA M+ R A + + L G+R
Sbjct: 497 ALFFLYGTGANGKSVFVNTLATILGD-YAVNAAMDTFMETR---ADRHPTDMAGLRGARF 552
Query: 562 VIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDD 621
V ET + +K+K +TGGD ++AR + + P F F+ N +RN D+
Sbjct: 553 VAAIETEQGRRWAESKVKNLTGGDKISARFMRQDFFEFFP-QFKLFVAGNHKPAIRNIDE 611
Query: 622 AWWRRYIVIPF--DKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVC 679
A RR +IPF P RD QKL + W ++G + G + P+
Sbjct: 612 AMKRRLHLIPFTITVPPERRDKHLQQKLLAERG-GILAWAVQGCLDWQRLG-RLQPPQQV 669
Query: 680 LKAKEEERQGTDTYQAWIDDCC 701
L A EE + D W+D+ C
Sbjct: 670 LDATEEYFEAEDALGRWLDERC 691
>gi|295399290|ref|ZP_06809272.1| phage/plasmid primase, P4 family [Geobacillus thermoglucosidasius
C56-YS93]
gi|294978756|gb|EFG54352.1| phage/plasmid primase, P4 family [Geobacillus thermoglucosidasius
C56-YS93]
Length = 765
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 84/348 (24%), Positives = 156/348 (44%), Gaps = 16/348 (4%)
Query: 411 AGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFL 470
A ++ I+ + L+ L +G++DL TG+ + +E +TK+T + ++
Sbjct: 372 AEAMLPISQEELNKDKFLLNCANGVVDLRTGELLPHAREYMMTKNTHVSYDPNAKCPTWM 431
Query: 471 DLVSGYFESE-----EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF 525
+ F E++ + + +G AL G Q + G G +GKST +N IK
Sbjct: 432 AFLESIFRDGDNVKYEIISFLQKAIGYALTGDISEQVVFFLWGTGRNGKSTFINTIKALL 491
Query: 526 GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGD 585
G+ S+ + ++G N + RL GSR V E+ + ++ + IKQ+TGG+
Sbjct: 492 GD--YAKQTNSNTFTAKMNDSG-INNDIARLHGSRFVSAMESEDGQRLSESLIKQLTGGE 548
Query: 586 CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASF 643
+TAR + P F F N ++ D+ WRR ++PF I D
Sbjct: 549 PITARFLRKEFFEFVP-EFKIFFTTNHKPIIKGDDEGIWRRIRLVPFTYTIPKEQVDKHL 607
Query: 644 AQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDI 703
+KL + +W ++G + +GL P+ A +E ++ D +++DCC I
Sbjct: 608 PEKLMNELP-GILRWAVEGCLKWQKEGLGE--PDEIKNATDEYKEEMDLLSNFLNDCCVI 664
Query: 704 GENLWEESHSLAKSYSEYREQ--ELNYDRKRISTRTVTLNLKQKGFIG 749
+ + + L K Y ++ E+ E+ +++ S R V +++ G
Sbjct: 665 HPDAKVQLNELYKEYIDWCEENSEIPMKKQKFSARLVLRGFEKRKSTG 712
>gi|52081928|ref|YP_080719.1| phage-like protein [Bacillus licheniformis ATCC 14580]
gi|52787314|ref|YP_093143.1| hypothetical protein BLi03629 [Bacillus licheniformis ATCC 14580]
gi|52005139|gb|AAU25081.1| hypothetical phagelike protein [Bacillus licheniformis ATCC 14580]
gi|52349816|gb|AAU42450.1| putative protein [Bacillus licheniformis ATCC 14580]
Length = 805
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 85/347 (24%), Positives = 151/347 (43%), Gaps = 18/347 (5%)
Query: 409 LEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE 468
L+ + S+ LDS +G++DL+TG+ + ++L TK + +
Sbjct: 417 LDVRPMVSVRKQELDSHKYLFNCDNGVIDLKTGELLPHDRDLLFTKISPISYQTDADCPN 476
Query: 469 FLDLVSGYFESE------EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIK 522
+ + F + E++D+ + +G +L G Q + G G +GKST +N ++
Sbjct: 477 WKTFLESIFIDDQGTPNYEIIDFMQKAIGYSLTGDTTEQVMFFLFGNGRNGKSTFINTVQ 536
Query: 523 YAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMT 582
+ FG+ Y + ++ + A N + RL G+R V E+ E +++ + +KQ+T
Sbjct: 537 HLFGD-YGRQTNSDTFIKKKNDSA--INNDIARLDGARFVSAVESEEGQQLSESLVKQIT 593
Query: 583 GGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--D 640
GG+ M+AR Y E F F N V+ D+ WRR +IPF I D
Sbjct: 594 GGEKMSARF-LRQEYFEFTPEFKVFFTTNHKPIVKGSDEGIWRRIRLIPFTVTIPKEKVD 652
Query: 641 ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDC 700
QKL + +W ++G + +GL PE KA + R+ D ++++
Sbjct: 653 KKLPQKLAAEMP-GILRWAVEGCLKWQKEGLGE--PEAIKKATDGYREDMDILGPFMEER 709
Query: 701 CDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGF 747
C E+ L Y +Y++ D + R L+ +GF
Sbjct: 710 CIQHPKAKVEAKEL---YKDYKDWCFENDEIELKNRAFYRQLEIRGF 753
>gi|212638627|ref|YP_002315147.1| phage associated DNA primase [Anoxybacillus flavithermus WK1]
gi|212560107|gb|ACJ33162.1| Phage associated DNA primase [Anoxybacillus flavithermus WK1]
Length = 765
Score = 103 bits (258), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 82/348 (23%), Positives = 155/348 (44%), Gaps = 16/348 (4%)
Query: 411 AGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFL 470
A ++ I+ + L+ L +G++DL TG+ + +E +TK+T P+ ++
Sbjct: 372 AEAMLPISQEELNKDKFLLNCANGVVDLRTGELLPHAREYMMTKNTHIPYDPNAKCPTWI 431
Query: 471 DLVSGYFES-----EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF 525
+ F ++++++ + +G L G Q + G G +GKST +N +K
Sbjct: 432 AFLESIFRDGGDVKQDIINFLQKAIGYTLTGDISEQVVFFLWGTGRNGKSTFINTVKALL 491
Query: 526 GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGD 585
G+ S+ + ++G N + RL GSR V E+ + ++ + IKQ+TGG+
Sbjct: 492 GD--YAKQTNSNTFTAKMNDSG-INNDIARLHGSRFVSAVESEDGQRLSESLIKQLTGGE 548
Query: 586 CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASF 643
+TAR + P F F N ++ D+ WRR ++PF I D
Sbjct: 549 PITARFLRKEFFEFVP-EFKIFFTTNHKPIIKGDDEGIWRRIRLVPFTYTIPKEQVDKHL 607
Query: 644 AQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDI 703
+KL + +W ++G + +GL P+ A E + D +++DCC I
Sbjct: 608 PEKLMNELP-GILRWAVEGCLKWQKEGLGE--PDEIKNATSEYKDEMDLLSNFLNDCCVI 664
Query: 704 GENLWEESHSLAKSYSEYREQ--ELNYDRKRISTRTVTLNLKQKGFIG 749
+ + L K Y ++ E+ E+ +++ S R V +++ G
Sbjct: 665 HPGAKVQLNELYKEYIDWCEENSEIAMKKQKFSARLVLRGFEKRKSTG 712
>gi|227875063|ref|ZP_03993208.1| phage-associated protein [Mobiluncus mulieris ATCC 35243]
gi|304390306|ref|ZP_07372259.1| P4 family prophage LambdaSa04 [Mobiluncus curtisii subsp. curtisii
ATCC 35241]
gi|306817350|ref|ZP_07451095.1| P4 family prophage LambdaSa04 protein [Mobiluncus mulieris ATCC
35239]
gi|227844341|gb|EEJ54505.1| phage-associated protein [Mobiluncus mulieris ATCC 35243]
gi|304326062|gb|EFL93307.1| P4 family prophage LambdaSa04 [Mobiluncus curtisii subsp. curtisii
ATCC 35241]
gi|304649791|gb|EFM47071.1| P4 family prophage LambdaSa04 protein [Mobiluncus mulieris ATCC
35239]
Length = 753
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 98/378 (25%), Positives = 164/378 (43%), Gaps = 24/378 (6%)
Query: 405 TAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGT-PFVEG 463
TA EAG I + LD L G DL + +TK T P EG
Sbjct: 395 TATLKEAGPILQVRVRDLDVDPYQLNTPAGTWDLRDSSSHEHNPADLLTKQTAVGPSDEG 454
Query: 464 EPSQEFLDLVSGYFESE-EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIK 522
+Q + D + +F+ + E++ Y R VG+A +G + + G G +GKST N I
Sbjct: 455 --AQIWADALDVFFQGDVELIGYVQRIVGLAAIGQVFVEALVIAYGDGRNGKSTFWNTIA 512
Query: 523 YAFGN-QYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM 581
G I+A+A + R P L G R++I +ET E ++ + +KQ+
Sbjct: 513 RVLGTYSGTISADALTVGVRR-----NVKPELAEARGKRLLIAAETEEGMRLSTSNVKQL 567
Query: 582 TGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI-ANRD 640
D ++A + + ++ +P S T + N V D WRR IVIPF+ I + D
Sbjct: 568 ASTDQISAEKKFKDPFAFTP-SHTLVLYTNHLPRVGAMDAGIWRRLIVIPFNATIEGDTD 626
Query: 641 A-SFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD 699
++A L W ++G + S+G + P ++A + ++ D + +++D
Sbjct: 627 VKNYADHLYEHAGGAILSWIMEGARLIHSEGYKLTPPPQVVQASQAYKEDNDWFSQFLED 686
Query: 700 CCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKE 759
CD+ + L E + L ++Y + + + R + +Q GF +R+K
Sbjct: 687 SCDVEDGLSERAGDLYQTYRAWAQNTSGWARPMVDFNAAC---EQAGF----ERKKT--- 736
Query: 760 WKSKRIIKGLKLKPAFES 777
KS + GL L F S
Sbjct: 737 -KSGIRVYGLALTSEFNS 753
>gi|23015921|ref|ZP_00055685.1| COG3378: Predicted ATPase [Magnetospirillum magnetotacticum MS-1]
Length = 796
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 95/389 (24%), Positives = 161/389 (41%), Gaps = 22/389 (5%)
Query: 393 RQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYI 452
R + S + + A + T+++ D L G++DL +GQ + L +
Sbjct: 424 RSKLSSASTVAAVERLARADRSHAATTEVWDRDPWLLNTPGGVVDLHSGQIQPHNRALAM 483
Query: 453 TKST-GTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGG 511
TK T TP + ++F+ V+G +++ DY R G L G + G G
Sbjct: 484 TKITMATPQGDCPIWRQFVATVTG--GDKDLQDYLQRVAGYCLTGVTSEHALFFLYGTGA 541
Query: 512 SGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEND 571
+GKS N + G+ + A D+ E + + L G+RIV ET +
Sbjct: 542 NGKSVFANTLTAILGDYATV--AAMDMFMATTSE--RHPTDMAGLRGARIVTSIETEQGR 597
Query: 572 EINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIP 631
+K+K +TGGD +TAR + + P F + N +RN D+A RR ++P
Sbjct: 598 RWAESKLKALTGGDKITARFMRQDFFEFIP-QFKLLVAGNHKPAIRNVDEAMRRRLHMVP 656
Query: 632 F--DKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQG 689
F P A RD + +L + W ++G A+ GL P + A +E +
Sbjct: 657 FTITIPPAKRDKQLSDRLLAERD-GILAWAVEGCLAWQRTGLRP--PAAVMAATDEYFES 713
Query: 690 TDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQ--ELNYDRKRISTRTVTLNLKQKGF 747
D + W+D+ C+ G + E + +L + + E E KR + V L+Q
Sbjct: 714 EDAFGRWLDERCERGNSFSETTSALFGDWKNWTEANGEFTGSIKRFAENLVNRGLEQ--- 770
Query: 748 IGGIKREKIEKEWKSKRIIKGLKLKPAFE 776
R K + ++ R+ +G E
Sbjct: 771 ----WRSKTARHFRGVRLCEGADASDGME 795
>gi|222112386|ref|YP_002554650.1| hypothetical protein Dtpsy_3221 [Acidovorax ebreus TPSY]
gi|221731830|gb|ACM34650.1| phage/plasmid primase, P4 family [Acidovorax ebreus TPSY]
Length = 760
Score = 103 bits (257), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 82/289 (28%), Positives = 132/289 (45%), Gaps = 12/289 (4%)
Query: 416 SITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITK-STGTPFVEGEPSQEFLDLVS 474
+ T+D D+ L G++DL+TG+ + +TK +T TP + ++F+D V+
Sbjct: 407 AATTDEWDADPWLLNTPGGVVDLKTGRMRPHERADRMTKITTATPSGDCPTWKQFIDEVT 466
Query: 475 GYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
G +E+ Y R VG AL G + + G G +GKS +N + G+ Y NA
Sbjct: 467 G--GDKELQSYLQRMVGYALTGSTQEHALFFLYGTGANGKSVFVNTLATILGD-YATNAP 523
Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
M+ R + + L G+R V ET + +K+K +TGGD ++AR
Sbjct: 524 MDTFMETR---TDRHPTDMAGLRGARFVAAIETEQGKRWAESKLKNLTGGDKISARFMRQ 580
Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF--DKPIANRDASFAQKLETKYT 652
+ + P F F+ N +RN D+A RR +IPF P RD + QKL +
Sbjct: 581 DFFEFFP-QFKLFVAGNHRPAIRNIDEAMKRRLHLIPFTITVPPERRDKNLQQKLLAERD 639
Query: 653 LEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCC 701
W ++G + G + P+ + A EE + D W+D+ C
Sbjct: 640 -GILAWAVQGCLDWQRHGR-LSPPQRVVDATEEYFEAEDALGRWLDERC 686
>gi|219855955|ref|YP_002473077.1| hypothetical protein CKR_2612 [Clostridium kluyveri NBRC 12016]
gi|219569679|dbj|BAH07663.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 787
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 113/215 (52%), Gaps = 3/215 (1%)
Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY 476
I S ++DS R++ +GI+D+ TG+ + K+L+I+K +V G+ + F +
Sbjct: 424 INSKIMDSDVRYINCNNGIVDITTGKILPHDKDLHISKIAEVNYVPGKINSLFKASIDRL 483
Query: 477 FESE-EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535
F + E ++ F +G L G + F I GV +GK+ + LI FG+ YV + +
Sbjct: 484 FNGDNEEIEAFEILLGYMLSGRANQKIFPIIHGVRNTGKTQIFELILNTFGSDYVKSIDK 543
Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595
S +M+ +G ANP L L G R++I SET+++D ++ +K++ GGD + AR Y
Sbjct: 544 SLLMKAWNKNSG-ANPELAELQGVRLLICSETSDSDYLDTDFMKKIVGGDTIKARPLYKP 602
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVI 630
+P +F P I NK DDA R IVI
Sbjct: 603 PIEFTP-NFVPVIFTNKKPSFDGNDDALVIRIIVI 636
>gi|153955563|ref|YP_001396328.1| hypothetical protein CKL_2948 [Clostridium kluyveri DSM 555]
gi|146348421|gb|EDK34957.1| Phage-related protein [Clostridium kluyveri DSM 555]
Length = 768
Score = 103 bits (256), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/215 (32%), Positives = 113/215 (52%), Gaps = 3/215 (1%)
Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY 476
I S ++DS R++ +GI+D+ TG+ + K+L+I+K +V G+ + F +
Sbjct: 405 INSKIMDSDVRYINCNNGIVDITTGKILPHDKDLHISKIAEVNYVPGKINSLFKASIDRL 464
Query: 477 FESE-EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535
F + E ++ F +G L G + F I GV +GK+ + LI FG+ YV + +
Sbjct: 465 FNGDNEEIEAFEILLGYMLSGRANQKIFPIIHGVRNTGKTQIFELILNTFGSDYVKSIDK 524
Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595
S +M+ +G ANP L L G R++I SET+++D ++ +K++ GGD + AR Y
Sbjct: 525 SLLMKAWNKNSG-ANPELAELQGVRLLICSETSDSDYLDTDFMKKIVGGDTIKARPLYKP 583
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVI 630
+P +F P I NK DDA R IVI
Sbjct: 584 PIEFTP-NFVPVIFTNKKPSFDGNDDALVIRIIVI 617
>gi|315497369|ref|YP_004086173.1| phage/plasmid primase, p4 family [Asticcacaulis excentricus CB 48]
gi|315415381|gb|ADU12022.1| phage/plasmid primase, P4 family [Asticcacaulis excentricus CB 48]
Length = 521
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 86/319 (26%), Positives = 140/319 (43%), Gaps = 11/319 (3%)
Query: 452 ITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGG 511
IT+ T + + +F LV+ + EV + R G A G Q F ++G G
Sbjct: 176 ITRIANTEYDPKAKAPQFEQLVATSLRNPEVRAFMQRACGYAFTGEIFEQGFFILQGKGA 235
Query: 512 SGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMG-SRIVIISETNEN 570
GKST+MN ++ G Y +A+ + P L+RL G +R+V+++E
Sbjct: 236 DGKSTIMNALRDMAGG-YGASAKVETFLDTGQASPNGPQPELVRLAGETRLVLLAEPPRG 294
Query: 571 DEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVI 630
++N IK TGGD +AR G + P +++ N V+ DD WRR VI
Sbjct: 295 AKLNEGLIKGWTGGDPYSARQIQGKNFEFVPKGRL-WMMCNALPVVKGDDDGIWRRMNVI 353
Query: 631 PFDK--PIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQ 688
F+ P RD +KL+ ++ W + GV ++ +GL PE E R+
Sbjct: 354 MFEHQVPEDQRDKRLPEKLKAEFP-GILNWIIAGVGDWLEQGLKP--PEKVRAVLENYRK 410
Query: 689 GTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYR--EQELNYDRKRISTRTVTLNLKQKG 746
+ + W+D+ C GE + Y+ Y+ +E +DR +S R L Q+
Sbjct: 411 TSSPFGDWLDESCVYGEAAGDAVTGATVLYNSYKAWAEENGHDRP-MSVRAFGDALMQRQ 469
Query: 747 FIGGIKREKIEKEWKSKRI 765
+ G + +K K R+
Sbjct: 470 ILLGPRLSDGKKTRKPIRL 488
>gi|326790511|ref|YP_004308332.1| phage/plasmid primase, P4 family [Clostridium lentocellum DSM 5427]
gi|326541275|gb|ADZ83134.1| phage/plasmid primase, P4 family [Clostridium lentocellum DSM 5427]
Length = 729
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 87/319 (27%), Positives = 145/319 (45%), Gaps = 17/319 (5%)
Query: 392 RRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKEL- 450
++Q V + KS SI + T LL S + +++ TG + KE+
Sbjct: 349 KKQAVLYQNHLKSCRSHRGKTSILNETKHLLPIVSTTFNSRRDVINTPTGTYLIHDKEVR 408
Query: 451 ------YITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRF 503
Y++++T VE + + ++ F +E++ Y + +G +L G + Q
Sbjct: 409 PHCYKDYLSQATQVSVVEDAKAPTWERFINEIFLGDQELIRYVQKAIGYSLTGFTREQCM 468
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVI 563
G G +GK +++ Y F + YV +A I Q R + +A+P +I LM +R+V+
Sbjct: 469 FIGYGDGANGKGVFKDILSYIF-DDYVKCPQAETISQIR--QGSEASPDIINLMDARLVV 525
Query: 564 ISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAW 623
E+N+ N IKQ+TG D +TAR Y S P F ++ N V D
Sbjct: 526 CVESNKGVRFNEGLIKQLTGEDKVTARRLYCEPMSFMP-QFKLWLFTNHMPEVVGTDKGI 584
Query: 624 WRRYIVIPF--DKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLK 681
WRR VIPF D P +D KL K W ++G+ Y+ +GL PE ++
Sbjct: 585 WRRLKVIPFKLDLPEHKKDRQLKDKL-MKEVEGILWWCIEGIHLYLEEGLKE--PEAIIE 641
Query: 682 AKEEERQGTDTYQAWIDDC 700
E ++ +DT ++ +C
Sbjct: 642 LVHEFKEESDTLGLFLREC 660
>gi|17547948|ref|NP_521350.1| hypothetical protein RSc3229 [Ralstonia solanacearum GMI1000]
gi|17430254|emb|CAD17017.1| putative bacteriophage-related protein [Ralstonia solanacearum
GMI1000]
Length = 759
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 83/289 (28%), Positives = 130/289 (44%), Gaps = 12/289 (4%)
Query: 416 SITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITK-STGTPFVEGEPSQEFLDLVS 474
+ T+ D+ L G++DL TG++ ++ +TK +T TP + ++FL V+
Sbjct: 406 AATTSEWDADPWLLNTPGGVVDLRTGRQRPHDRDDRMTKITTATPVGDCPTWRQFLAEVT 465
Query: 475 GYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
G E+ Y R G AL G + + G G +GKS +N + G+ Y NA
Sbjct: 466 G--GDVELQAYLQRMAGYALTGSTQEHALFFLYGTGANGKSVFVNTLATILGD-YAANAA 522
Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
M+ R A + + L G+R V ET + +K+K +TGGD ++AR
Sbjct: 523 MDTFMETR---ADRHPTDMAGLRGARFVAAIETEQGRRWAESKVKNLTGGDKISARFMRQ 579
Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF--DKPIANRDASFAQKLETKYT 652
+ + P F F+ N +RN D+A RR +IPF P RD QKL +
Sbjct: 580 DFFEFFP-QFKLFVAGNHKPAIRNIDEAMKRRLHLIPFTVTVPPERRDKHLQQKLLAERD 638
Query: 653 LEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCC 701
W ++G + G +D P+ L A EE + D W+D+ C
Sbjct: 639 -GILAWAVQGCLDWQRLG-RLDPPQQVLDATEEYFEAEDALGRWLDERC 685
>gi|293401137|ref|ZP_06645281.1| putative phage/plasmid DNA primase [Erysipelotrichaceae bacterium
5_2_54FAA]
gi|291305263|gb|EFE46508.1| putative phage/plasmid DNA primase [Erysipelotrichaceae bacterium
5_2_54FAA]
Length = 757
Score = 102 bits (254), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 98/370 (26%), Positives = 161/370 (43%), Gaps = 26/370 (7%)
Query: 410 EAGSIFSITSDLLDSSSRFLGEQDGILDLETG--QKVKPTKELYITKSTG-TPFVEGEPS 466
E+ + I+ LD+ L + DL G + + E +ITK T +P +G P
Sbjct: 396 ESHPMLEISPRDLDADCFALCTPEATYDLRKGIAGAREHSAEDFITKITSVSPSQKGMPI 455
Query: 467 QEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF 525
+LD ++ F+ ++E++DY G+A +G + I G G +GKST N I
Sbjct: 456 --WLDSLNLIFQHNQELIDYVQMICGLAAIGKVYVEALIIAYGDGRNGKSTFWNAISRVL 513
Query: 526 G-NQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGG 584
G I+A+ + R P + + G R++I +E E +N + +KQ+
Sbjct: 514 GLYSGNISADTLTVGCRR-----NIKPEMAEVKGKRLLIAAEMQEGARLNDSTVKQLCST 568
Query: 585 DCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD--AS 642
D + A Y + +S P T + N V DD WRR IVIPF+ I +
Sbjct: 569 DDVFAEKKYKDPFSFKPCH-TLVLYTNHLPRVSASDDGIWRRLIVIPFNAKITGSSDIKN 627
Query: 643 FAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCD 702
+++ L W ++G K I + +P +A E R D + +++D CD
Sbjct: 628 YSEYLYDNAGEAILAWVIEGAKKVIELDYQIPVPACVQEAINEYRSQNDWFSHFLEDKCD 687
Query: 703 IGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKS 762
+G E S +L ++Y Y Y R ST L+ G+ E+I +
Sbjct: 688 VGIEYKESSSALYQAYRNYCMDTNEYVR---STADFYFALENAGY------ERITQ--NR 736
Query: 763 KRIIKGLKLK 772
KR KGL+++
Sbjct: 737 KRYFKGLRIR 746
>gi|295002752|gb|ADF59173.1| gp60 [Bacillus phage phi105]
Length = 806
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 84/347 (24%), Positives = 152/347 (43%), Gaps = 18/347 (5%)
Query: 409 LEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE 468
L+A + S+ LDS ++G++DL+TG + ++L TK + + +
Sbjct: 415 LDARPMVSVRKQELDSHKYLFNCENGVIDLKTGDLLPHDRDLLFTKISPVAYEKDADCPN 474
Query: 469 FLDLVSGYFESEE------VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIK 522
+ + F EE ++++ + +G +L G Q + G G +GKST +N ++
Sbjct: 475 WKAFMESIFIDEEGNPNYEIIEFLQKAIGYSLTGETTEQVMFFLFGNGRNGKSTFINTVQ 534
Query: 523 YAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMT 582
G+ Y + ++ + + N + RL G+R V E+ E +++ + +KQ+T
Sbjct: 535 QLLGD-YGRQTNSDTFIKKKNDSS--INNDIARLDGARFVSAVESEEGQQLSESLVKQIT 591
Query: 583 GGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--D 640
GG+ M+AR Y E F F N V+ D+ WRR ++PF I D
Sbjct: 592 GGEKMSARF-LRQEYFEFTPEFKVFFTTNHKPIVKGSDEGIWRRIRLVPFTVTIPKEKVD 650
Query: 641 ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDC 700
QKL + +W ++G + +GL PE KA E R+ D ++++
Sbjct: 651 KQLPQKLAAEMP-GILRWAVEGCLMWQKEGLTE--PEDIRKATEGYREDMDILGPYMEER 707
Query: 701 CDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGF 747
C + E+ L Y +Y++ D + R L+ +GF
Sbjct: 708 CILHPTTKVEAKEL---YKDYKDWCFENDEIELKNRAFYRQLEIRGF 751
>gi|22855035|ref|NP_690795.1| hypothetical protein phi105_42 [Bacillus phage phi105]
gi|4126648|dbj|BAA36668.1| unnamed protein product [Bacteriophage phi-105]
Length = 806
Score = 102 bits (254), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 84/347 (24%), Positives = 152/347 (43%), Gaps = 18/347 (5%)
Query: 409 LEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE 468
L+A + S+ LDS ++G++DL+TG + ++L TK + + +
Sbjct: 415 LDARPMVSVRKQELDSHKYLFNCENGVIDLKTGDLLPHDRDLLFTKISPVAYEKDADCPN 474
Query: 469 FLDLVSGYFESEE------VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIK 522
+ + F EE ++++ + +G +L G Q + G G +GKST +N ++
Sbjct: 475 WKAFMESIFIDEEGNPNYEIIEFLQKAIGYSLTGETTEQVMFFLFGNGRNGKSTFINTVQ 534
Query: 523 YAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMT 582
G+ Y + ++ + + N + RL G+R V E+ E +++ + +KQ+T
Sbjct: 535 QLLGD-YGRQTNSDTFIKKKNDSS--INNDIARLDGARFVSAVESEEGQQLSESLVKQIT 591
Query: 583 GGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--D 640
GG+ M+AR Y E F F N V+ D+ WRR ++PF I D
Sbjct: 592 GGEKMSARF-LRQEYFEFTPEFKVFFTTNHKPIVKGSDEGIWRRIRLVPFTVTIPKEKVD 650
Query: 641 ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDC 700
QKL + +W ++G + +GL PE KA E R+ D ++++
Sbjct: 651 KQLPQKLAAEMP-GILRWAVEGCLMWQKEGLTE--PEDIRKATEGYREDMDILGPYMEER 707
Query: 701 CDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGF 747
C + E+ L Y +Y++ D + R L+ +GF
Sbjct: 708 CILHPTTKVEAKEL---YKDYKDWCFENDEIELKNRAFYRQLEIRGF 751
>gi|146277397|ref|YP_001167556.1| hypothetical protein Rsph17025_1354 [Rhodobacter sphaeroides ATCC
17025]
gi|145555638|gb|ABP70251.1| phage/plasmid primase, P4 family [Rhodobacter sphaeroides ATCC
17025]
Length = 470
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 93/368 (25%), Positives = 164/368 (44%), Gaps = 23/368 (6%)
Query: 411 AGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGT---PFVEGEPSQ 467
A + ++T ++ D LG +DL TG+ P E IT+ P + +
Sbjct: 118 ADPVHAVTHEVWDPDPMLLGCPGVTVDLRTGKMRAPIPEDMITRQAAVAPDPDADCPNWK 177
Query: 468 EFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527
F+ V+ E +++ + +G +L G K + + I G GG+GKS L++ + G+
Sbjct: 178 SFIRSVTR--EDDDLERFLQAFLGYSLTGSIKEHQMLFIHGNGGNGKSLLLSTVMGIMGD 235
Query: 528 QYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCM 587
Y A +R + + L + G+R+V +SE ++ N ++ QMTGGD +
Sbjct: 236 -YAQMASMDTFASSR---YERHSTDLAAMRGARVVGVSEVSQGVGWNQQRLAQMTGGDRV 291
Query: 588 TARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKL 647
AR + + P F +V N + + ++A RR ++PF D A KL
Sbjct: 292 RARFMRQDEFEYHP-QFKLIVVGNHKPELSHVNEAMRRRMNIVPFTWKPEVPDQELALKL 350
Query: 648 ETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDI---G 704
E ++ +W ++G + GL P+V + EE + DT+ W+++CC +
Sbjct: 351 EPEWP-AILQWLIRGCLEWQEHGLRK--PQVICRETEEYFEEQDTFAQWLEECCIVDRRD 407
Query: 705 ENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKR 764
+N W+ L S+ + E L + +T L + GF K KI KS R
Sbjct: 408 KNCWDVLVDLYHSWKTFAEARLE---PAGTAKTFGERLGECGFETAFK--KIAG--KSAR 460
Query: 765 IIKGLKLK 772
+ G++L+
Sbjct: 461 VRLGVQLR 468
>gi|320013130|gb|ADW07978.1| phage/plasmid primase, P4 family [Streptomyces flavogriseus ATCC
33331]
Length = 509
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 104/448 (23%), Positives = 187/448 (41%), Gaps = 49/448 (10%)
Query: 295 GKLIPKGLLASRFSDAYNKAMF-SIYKK------GHFLYTADTKAWYKKDKNNVYIWSLT 347
G+ GLL +D N +F +Y G Y DT W + D+++ +W+
Sbjct: 44 GEATQHGLLPDTLTDRGNAKLFVKLYANDYRHVPGMGWYRWDTTRW-QIDEDDTVVWA-- 100
Query: 348 LDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTD----YRRQNVEENSKAK 403
DL+E + S PR + T +RR+ +
Sbjct: 101 ------------------AGDLAE-----SIASSDPRGLYTTQALQQHRRRALSTTGMNA 137
Query: 404 STAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETG--QKVKPTKELYITKSTGTPFV 461
Q+ A + + + LD+ + L DGI+DL TG + P K+ + ++ P
Sbjct: 138 MLTQAKSAPGMV-LNAARLDADAYALCTPDGIVDLRTGLLKTPDPNKDFHSRSTSVGPRP 196
Query: 462 EGEPS-QEFL-DLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMN 519
P FL D E E++++ +G ++ G Q + G G +GKS L++
Sbjct: 197 SPTPRWNRFLTDTFGDDAEGTEMIEFLQLLLGYSVTGDVGGQVLPFLFGSGKNGKSVLLD 256
Query: 520 LIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIK 579
++ G+ +A + RP E + L L G R+++ SE D+ + A++K
Sbjct: 257 VLMKLLGD--YADAAPPGFLMARPYEGHPTD--LAELHGRRVIVCSEVKHGDKFDEARVK 312
Query: 580 QMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN- 638
+TGGD + AR + +S P + +++ N V A+WRR +IPF + +++
Sbjct: 313 LLTGGDRIKARRMRQDFFSFQP-THKLWLLGNHRPEVGTGGFAFWRRMRLIPFTRVVSDD 371
Query: 639 -RDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWI 697
+ + A L T+ W + G + Y++ D+ PE A + D +
Sbjct: 372 RKIDNLADILVTEEGPGILGWLIDGARRYLAGDKDLTGPERVRIATTAYAETEDHTGRFF 431
Query: 698 DDCCDIGENLWEESHSLAKSYSEYREQE 725
++CC +G L E L +Y + ++E
Sbjct: 432 EECCTLGPELRAEQTGLYTAYRTWCQEE 459
>gi|227530259|ref|ZP_03960308.1| phage DNA polymerase [Lactobacillus vaginalis ATCC 49540]
gi|227349813|gb|EEJ40104.1| phage DNA polymerase [Lactobacillus vaginalis ATCC 49540]
Length = 749
Score = 102 bits (253), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 97/361 (26%), Positives = 156/361 (43%), Gaps = 32/361 (8%)
Query: 422 LDSSSRFLGEQDGILDLETG---QKVKPTKELYITKSTGTPFVEGEPSQEFLD--LVSGY 476
D+ L +G +L+ G Q+ EL ITKST V G L + +
Sbjct: 405 FDADPFLLNTPNGPFNLKKGMHGQQEIQADEL-ITKSTSC--VPGNQGASLWQEALTTFF 461
Query: 477 FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN---QYVINA 533
+ +++Y VG+ +G + I G G +GKST N I G +A
Sbjct: 462 CGDQALINYVQEIVGLVAIGQVYLEALIIAYGSGRNGKSTFWNTIANVLGTYTGHLSADA 521
Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593
+ + +N PE + + G R++I +E E +N + +KQ+ D + A Y
Sbjct: 522 LTTGVRRNVKPE-------MAEVKGKRLIISAELEEGKRLNTSIVKQLCSTDEIYAEKKY 574
Query: 594 GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD--ASFAQKLETKY 651
+S +P S T + N V D+ WRR IVIPF+ IA R+ ++AQ L K
Sbjct: 575 MKPFSFTP-SHTIVVYTNYLPHVGGNDEGIWRRLIVIPFNAKIAKRNDIKNYAQYLTEKA 633
Query: 652 TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEES 711
+W ++G + I + + P KA D ++++ C++ + ++S
Sbjct: 634 GPAVLQWIIEGAQRTIQQNYQLTTPAAVTKAVRAYHADNDWLGHFLNENCELDPSYEQKS 693
Query: 712 HSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771
L + Y EY + Y R ST + LK GF ++ K+ S R IKGL+L
Sbjct: 694 GDLYQKYREYCQGIGEYTR---STTDFYMALKNAGF------QRQHKQ--SGRFIKGLRL 742
Query: 772 K 772
K
Sbjct: 743 K 743
>gi|254384016|ref|ZP_04999362.1| conserved hypothetical protein [Streptomyces sp. Mg1]
gi|194342907|gb|EDX23873.1| conserved hypothetical protein [Streptomyces sp. Mg1]
Length = 495
Score = 102 bits (253), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 88/346 (25%), Positives = 153/346 (44%), Gaps = 26/346 (7%)
Query: 393 RQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETG--QKVKPTKEL 450
R+ S K+ +A ++ D LD L G++DL TG K PT++L
Sbjct: 97 RKRTMSTSGVKAMLTQAKASPELALDPDTLDGDKYALCTPAGVVDLRTGDLHKPDPTRDL 156
Query: 451 YITKSTGTPFVEGEPSQEFLDLVSGYF----ESEEVMDYFTRCVGMALLGGNKAQRFIHI 506
+ + P E P+ F + F + +E++ + +G ++ G Q +
Sbjct: 157 HSRATHLAP--EAMPTPRFHCFLKQTFGDDDKGKEMIHFLHLLLGYSITGDVGGQVLPFL 214
Query: 507 RGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKAN---PSLIRLMGSRIVI 563
GVG +GKS L++++ G+ Y A +M E GK N L L G R+ +
Sbjct: 215 YGVGANGKSALLDVVIKILGD-YADVAPPGFLM-----ERGKFNEHSTELTELHGRRLFV 268
Query: 564 ISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAW 623
SE +D+ + A++K +TGGD + AR + +S P + +++ N V A+
Sbjct: 269 CSELKPHDKFDEARVKLLTGGDRLKARRMRQDFFSFEP-THKLWLLGNHRPEVGTGGHAF 327
Query: 624 WRRYIVIPFDK--PIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLK 681
WRR +IPF+K P + + A+ L + W ++G KAY++ + P V
Sbjct: 328 WRRIRLIPFEKVVPDHRKIDNLAETLVQEEGPGILHWMIQGAKAYLASKPPLTGPSVVRT 387
Query: 682 AKEEERQGTDTYQAWIDDCCDIGENLWE------ESHSLAKSYSEY 721
A + D ++ +CC G L + E +L ++YS +
Sbjct: 388 ATQAYATTEDHIGRFLAECCTTGAELPDPRDLKVEQGALYRAYSAW 433
>gi|326446240|ref|ZP_08220974.1| putative DNA primase/helicase [Streptomyces clavuligerus ATCC
27064]
Length = 507
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 84/332 (25%), Positives = 151/332 (45%), Gaps = 17/332 (5%)
Query: 403 KSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKE-LYITKSTGTPFV 461
K+ +A ++ +LD+ L +G++DL TG P E Y ++ST V
Sbjct: 136 KAMLAQAKAAPGMVLSPSMLDADPYALCTPEGVIDLTTGAVTPPDPEKHYHSRSTS---V 192
Query: 462 EGEPS-----QEFL-DLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKS 515
P + FL D E EE++D+ +G ++ G AQ + G G +GKS
Sbjct: 193 AARPRATPRWKRFLADCFGDDAEGEEMIDFLHELLGYSITGDVGAQVLPFLYGQGKNGKS 252
Query: 516 TLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA 575
L++++ G+ +A + RP E + L L G RI++ SE D +
Sbjct: 253 VLLDVMVKLLGD--YADAAPPGFLMARPFEGHPTD--LAELHGRRIIVCSELKPGDRFDE 308
Query: 576 AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP 635
A++K +TGGD + AR + +S P + +++ N V A+WRR ++PF++
Sbjct: 309 ARVKLLTGGDRIKARRMRQDFFSFGP-THKLWLLGNHRPEVGTGGYAFWRRMKLLPFERV 367
Query: 636 IAN--RDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTY 693
+ + + + A L T+ W ++G + Y++ D+ PE A + D
Sbjct: 368 VDDDRKVDNLADVLVTEEGPGILNWLVEGSRRYLTGPRDLTGPERVRTATTAYAETEDHT 427
Query: 694 QAWIDDCCDIGENLWEESHSLAKSYSEYREQE 725
++ +CC +G ++ E L SY ++ + E
Sbjct: 428 GRFLSECCTVGPSMRAEQTLLYASYRDWCQLE 459
>gi|309781007|ref|ZP_07675746.1| prophage LambdaMc01, DNA primase, P4 family [Ralstonia sp.
5_7_47FAA]
gi|330824596|ref|YP_004387899.1| phage/plasmid primase, P4 family [Alicycliphilus denitrificans
K601]
gi|308920310|gb|EFP65968.1| prophage LambdaMc01, DNA primase, P4 family [Ralstonia sp.
5_7_47FAA]
gi|329309968|gb|AEB84383.1| phage/plasmid primase, P4 family [Alicycliphilus denitrificans
K601]
Length = 766
Score = 101 bits (252), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 100/385 (25%), Positives = 162/385 (42%), Gaps = 34/385 (8%)
Query: 393 RQNVEENSKAKSTAQSLEAGSIFSI------------TSDLLDSSSRFLGEQDGILDLET 440
RQ K A+ AG++ + T+D D+ L G++DL+T
Sbjct: 378 RQTAVRADNPKVAAKLASAGTVGGVERLARADRRHAATTDEWDADPWLLNTPGGVVDLKT 437
Query: 441 GQKVKPTKELYITK-STGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNK 499
G+ + +TK +T TP + ++F+D V+G +E+ Y R VG AL G +
Sbjct: 438 GRMRTHERADRMTKITTATPSGDCPTWRQFIDEVTG--GDQELQSYLQRMVGYALTGSTQ 495
Query: 500 AQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGS 559
+ G G +GKS +N + Y NA M+ R + + L G+
Sbjct: 496 EHALFFLYGTGANGKSVFVNTLATIL-RDYATNAPMDTFMETR---TDRHPTDMAGLRGA 551
Query: 560 RIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNP 619
R V ET + +K+K +TGGD ++AR + + P F F+ N +RN
Sbjct: 552 RFVAAIETEQGKRWAESKLKNLTGGDKISARFMRQDFFEFFP-QFKLFVAGNHKPAIRNI 610
Query: 620 DDAWWRRYIVIPF--DKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPE 677
D+A RR +IPF P RD + QKL + W ++G + G + P+
Sbjct: 611 DEAMKRRLHLIPFTITVPPERRDKNLQQKLLAERD-GILAWAVQGCLDWQRHG-RLSPPQ 668
Query: 678 VCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQ--ELNYDRKRIST 735
+ A EE + D W+D+ C N + L + ++ E E ++R S
Sbjct: 669 RVVDATEEYFEAEDALGRWLDERCVREPNAKSLTAELFNDWKQWAEASGEFVGAQRRFSD 728
Query: 736 RTVTLNLKQ-------KGFIG-GIK 752
+T L + +GF G G+K
Sbjct: 729 LLITRGLDKWRNGMGVRGFQGIGLK 753
>gi|18496953|ref|NP_569803.1| hypothetical protein TM4_gp70 [Mycobacterium phage TM4]
gi|4336104|gb|AAD17635.1| gp70 [Mycobacterium phage TM4]
Length = 867
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 75/289 (25%), Positives = 135/289 (46%), Gaps = 12/289 (4%)
Query: 422 LDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEE 481
LD+ L G+++L+TG+ E + T+ TG + + + + F ++
Sbjct: 505 LDADPYALNTPSGVVNLKTGELTPHRPEGWHTRVTGAGYERDGAAPRWWAFLHRTFGGDK 564
Query: 482 VM-DYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540
M +Y R G A +G + G G +GKS LM+++ G+ Y I A + ++
Sbjct: 565 SMVEYVQRLAGYAAIGEVTHHVLPFLFGAGSNGKSVLMDVLSAVLGD-YAITAPGNFLLA 623
Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600
R + + RL G+R+V+ SE N + + + AK+K +TGGD ++ R + +
Sbjct: 624 GRE----RHETEIARLHGARLVVCSEVNADSKFDEAKVKLLTGGDVLSGRFMRQDFFDFV 679
Query: 601 PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD--ASFAQKLETKYTLEAKKW 658
P S T F++ N V+ +++RR+ +IPF+ + R+ A +L + W
Sbjct: 680 P-SHTLFLMGNHQPDVKAGGTSFFRRFRLIPFEHIVPERERVEGLAHQLVAEEGDAILAW 738
Query: 659 FLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQA-WIDDCCDIGEN 706
G + + G+ P L A + + T T A ++D+CC IGE
Sbjct: 739 IADGARQVLDGGMRE--PASVLAATAQYQDDTRTGVARFLDECCTIGEG 785
>gi|225573260|ref|ZP_03782015.1| hypothetical protein RUMHYD_01451 [Blautia hydrogenotrophica DSM
10507]
gi|225039392|gb|EEG49638.1| hypothetical protein RUMHYD_01451 [Blautia hydrogenotrophica DSM
10507]
Length = 740
Score = 101 bits (252), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 103/380 (27%), Positives = 163/380 (42%), Gaps = 25/380 (6%)
Query: 403 KSTAQSLEAGS-IFSITSDLLDSSSRFLGEQDGILDLETGQKVK--PTKELYITKSTGT- 458
K +L+A + I+ LD L DG L G + + + E YITK T
Sbjct: 379 KYVVSALQAAKPMLEISVSDLDRDGFLLNTPDGTYYLPDGLEGRRDHSPEDYITKITAAG 438
Query: 459 PFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTL 517
P +G+ +LD + F + + ++DY + VGMA +G + I G G +GKST
Sbjct: 439 PGDQGK--DLWLDALDTIFCQDQALIDYVQQIVGMAAVGRVYLESLIIAYGEGRNGKSTF 496
Query: 518 MNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK 577
N + G Y N A + P L + G R++I +E E +N +
Sbjct: 497 WNAVARVLGT-YSGNMSADTLTVGCKR---NVKPELAEVKGKRLIIAAELEEGMRLNTSV 552
Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637
+KQM D + A Y + +S +P S T + N V D WRR IVIPF+ I
Sbjct: 553 VKQMCSTDEIFAEKKYKDPFSFTP-SHTLVLYTNHLPRVGANDPGTWRRLIVIPFNAKIE 611
Query: 638 NRD--ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQA 695
++A L ++ W ++G K IS+ + P A + R+ D
Sbjct: 612 GSGDIKNYADYLVSEAAPSIMTWIIEGAKKAISRNFHIPAPACVEDAIKSYREDNDWLGH 671
Query: 696 WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755
++ +CC++ + E+S L + Y Y + Y R ST L+ GF+ R+K
Sbjct: 672 FLGECCEVDKVYREKSGELYQEYRSYCMRTGEYAR---STADFYNALELAGFM----RQK 724
Query: 756 IEKEWKSKRIIKGLKLKPAF 775
K+ I+GL++ F
Sbjct: 725 T----KTGNFIRGLRIIEDF 740
>gi|294817426|ref|ZP_06776068.1| Putative DNA primase/helicase [Streptomyces clavuligerus ATCC
27064]
gi|294322241|gb|EFG04376.1| Putative DNA primase/helicase [Streptomyces clavuligerus ATCC
27064]
Length = 532
Score = 101 bits (251), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 84/332 (25%), Positives = 151/332 (45%), Gaps = 17/332 (5%)
Query: 403 KSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKE-LYITKSTGTPFV 461
K+ +A ++ +LD+ L +G++DL TG P E Y ++ST V
Sbjct: 161 KAMLAQAKAAPGMVLSPSMLDADPYALCTPEGVIDLTTGAVTPPDPEKHYHSRSTS---V 217
Query: 462 EGEPS-----QEFL-DLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKS 515
P + FL D E EE++D+ +G ++ G AQ + G G +GKS
Sbjct: 218 AARPRATPRWKRFLADCFGDDAEGEEMIDFLHELLGYSITGDVGAQVLPFLYGQGKNGKS 277
Query: 516 TLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA 575
L++++ G+ +A + RP E + L L G RI++ SE D +
Sbjct: 278 VLLDVMVKLLGD--YADAAPPGFLMARPFEGHPTD--LAELHGRRIIVCSELKPGDRFDE 333
Query: 576 AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP 635
A++K +TGGD + AR + +S P + +++ N V A+WRR ++PF++
Sbjct: 334 ARVKLLTGGDRIKARRMRQDFFSFGP-THKLWLLGNHRPEVGTGGYAFWRRMKLLPFERV 392
Query: 636 IAN--RDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTY 693
+ + + + A L T+ W ++G + Y++ D+ PE A + D
Sbjct: 393 VDDDRKVDNLADVLVTEEGPGILNWLVEGSRRYLTGPRDLTGPERVRTATTAYAETEDHT 452
Query: 694 QAWIDDCCDIGENLWEESHSLAKSYSEYREQE 725
++ +CC +G ++ E L SY ++ + E
Sbjct: 453 GRFLSECCTVGPSMRAEQTLLYASYRDWCQLE 484
>gi|295402704|ref|ZP_06812647.1| phage/plasmid primase, P4 family [Geobacillus thermoglucosidasius
C56-YS93]
gi|294975276|gb|EFG50911.1| phage/plasmid primase, P4 family [Geobacillus thermoglucosidasius
C56-YS93]
Length = 832
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 86/356 (24%), Positives = 153/356 (42%), Gaps = 19/356 (5%)
Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTP 459
S+ K A A S + + LD +GI+DL TG+ + ++ +TK +
Sbjct: 442 SRGKIEAMISLAKSKVPVMPEELDQDIWLFNCANGIIDLRTGELLPHDRKKLMTKISPVI 501
Query: 460 FVEGEPSQEFLDLVSGYFESE------EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSG 513
+ ++ + E E++++ + VG +L G Q + G G +G
Sbjct: 502 YDPKAECPTWIKFLEDIMSDEKGNPKYELIEFLQKAVGYSLTGDTSEQVLFFLYGTGRNG 561
Query: 514 KSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI 573
KST +N I+ G+ Y A R + + N + L G+R V +E+ E +
Sbjct: 562 KSTFVNTIREILGD-YGKQTNADTFTVKR---SDRVNNDIAALKGARFVSATESEEGARL 617
Query: 574 NAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFD 633
+ +KQ+TGG+ + AR Y + P F F N ++ D+ WRR +IPF
Sbjct: 618 AESLVKQLTGGEAIQARFLYQENFEYIP-QFKIFFTTNHKPVIKGSDEGIWRRIRLIPFT 676
Query: 634 K--PIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTD 691
P +D +KL+ + +W ++G + +GL P+ +A E + D
Sbjct: 677 VTIPEEKKDTRLPEKLKAEMP-GILRWAVEGCLKWQREGLGN--PDEIKQATEGYKAEMD 733
Query: 692 TYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGF 747
+ A+I DCC + E L +Y ++ ++ Y+ I R L+++GF
Sbjct: 734 SLGAFIADCCVVNELAKCWGSDLYTAYQKWCDENGEYE---IGKRKFNKRLEERGF 786
>gi|56963140|ref|YP_174867.1| hypothetical protein ABC1368 [Bacillus clausii KSM-K16]
gi|56909379|dbj|BAD63906.1| phage-related protein [Bacillus clausii KSM-K16]
Length = 791
Score = 101 bits (251), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 84/350 (24%), Positives = 158/350 (45%), Gaps = 24/350 (6%)
Query: 409 LEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE 468
L+ + S+T++ LD ++G++DL+TG+ + ++ TK + + +
Sbjct: 413 LDMRPMVSVTNEELDKHPYLFNCKNGVIDLKTGELLSHDRKYLFTKISDVEYDKSAKCPN 472
Query: 469 FLDLVSGYFESE------EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIK 522
++ + F+ + E++ + + +G L G Q+ + G G +GKST +N I+
Sbjct: 473 WIKFLESIFQDDQGNVDYELIRFMQKAIGYTLTGDISEQQMFFLFGTGRNGKSTFINTIQ 532
Query: 523 Y---AFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIK 579
A+G Q SD + ++G N + RL +R V E+ E +++ + +K
Sbjct: 533 RILGAYGKQ-----TNSDTFIRKKNDSG-INNDIARLDKARFVSAVESEEGQQLSESLVK 586
Query: 580 QMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK--PIA 637
Q+TGG+ MTAR + +P F F N +R D+ WRR IPF P +
Sbjct: 587 QITGGERMTARFMRQEFFEFTP-EFKVFFTTNHPPVIRGSDEGIWRRICQIPFKVTIPKS 645
Query: 638 NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWI 697
D QKLE + W ++G + +GL+ P+ +A + R+ D ++
Sbjct: 646 QVDRRLPQKLEAEMP-GILAWAVEGCLLWQKEGLEH--PKSIKQATQAYREDMDILGPFL 702
Query: 698 DDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGF 747
++ C + E E+ + Y+EY++ + R L+ +GF
Sbjct: 703 EEKCIVSEIAEIEAKEI---YNEYKDFCFKNGEFELKNRAFYRLLESRGF 749
>gi|297242715|ref|ZP_06926653.1| phage/plasmid DNA primase [Gardnerella vaginalis AMD]
gi|296888926|gb|EFH27660.1| phage/plasmid DNA primase [Gardnerella vaginalis AMD]
Length = 737
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 91/328 (27%), Positives = 139/328 (42%), Gaps = 22/328 (6%)
Query: 411 AGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE-- 468
A S+ + ++ LD + L GI+DL+TG+ Y TK T PS+E
Sbjct: 383 AKSMLEVANEGLDRDAFILNTPCGIVDLKTGELKAHDPCSYCTKMTAVC-----PSRENM 437
Query: 469 -----FLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKY 523
LD+V+ +E + G L+G + + + G GG+GKST+ N +
Sbjct: 438 GLWQTTLDMVTA--GDKEFQTFLQSHAGSTLIGQVFEESLLLVYGSGGNGKSTVFNAEAH 495
Query: 524 AFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTG 583
G+ Y A + A L L G R ++ SET E ++ + +KQ+
Sbjct: 496 VLGD-YAGKIPAESLTT----RAKNVKVDLAELCGKRFILASETEEGQRLSISMLKQIAS 550
Query: 584 GDCMTARLNYGNTYSESPASFTPFIVPNKHL-FVRNPDDAWWRRYIVIPFDKPIANRDAS 642
D ++A Y ++ +P+ T I+ HL V + D WRR V PF K I N
Sbjct: 551 VDDISAERKYYAPFTFTPSHST--ILYTNHLPKVGSNDKGTWRRIFVAPFTKEIKNPKTD 608
Query: 643 FAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCD 702
+ +L K +W ++G K YI +V +AK+ R D +I D C
Sbjct: 609 YVDELLQKAGGAILQWMIEGAKLYIQNSYKFPTCKVVEQAKDAYRAENDWIGHFITDYCI 668
Query: 703 IGENLWEESHSLAKSYSEYREQELNYDR 730
G N E S SL SY ++ Y R
Sbjct: 669 KGVNETEMSRSLYLSYRQWANLNGEYVR 696
>gi|258516810|ref|YP_003193032.1| P4 family phage/plasmid primase [Desulfotomaculum acetoxidans DSM
771]
gi|257780515|gb|ACV64409.1| phage/plasmid primase, P4 family [Desulfotomaculum acetoxidans DSM
771]
Length = 798
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 98/366 (26%), Positives = 167/366 (45%), Gaps = 24/366 (6%)
Query: 389 TDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTK 448
D+ R++ E S+ K+ E+ I+ D LD++ L +G +DL+TG+ + +
Sbjct: 374 VDHARKS-EAASRIKAMITLAESEEGIPISPDQLDNNRWLLNCLNGTVDLKTGKLLPHRR 432
Query: 449 ELYITKSTGT---PFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIH 505
+ YITK P VE FL+ + +++ ++ + R GM L G
Sbjct: 433 DDYITKIAPVEYRPDVECPIWHTFLNEI--MEDNQNLVSFLQRAAGMCLTGDVSEHVLFV 490
Query: 506 IRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS-LIRLMGSRIVII 564
+ G G +GKSTL+N++ N Y I A +M + + +P+ L L G R+V+
Sbjct: 491 LHGNGRNGKSTLLNIM-LDIMNDYSIQAPPDLLMA----KHNERHPTELADLFGKRLVVS 545
Query: 565 SETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWW 624
E++E + + IKQ+TGGD + AR + + P S ++ N VR D A W
Sbjct: 546 IESDEGRRMAESLIKQLTGGDKIKARRMREDFWEFWP-SHKLWLATNHKPQVRGTDTAIW 604
Query: 625 RRYIVIPFDKPIANRDASFAQKLETKYTLEAK---KWFLKGVKAYISKGLDVDIPEVCLK 681
R +IPF+ A R+ ++L K E KW ++G A+ +GL V P+
Sbjct: 605 SRLKLIPFNVSFAGRE---NKQLPAKLLTEKPGIFKWLVEGCLAWQREGLGV--PDEVQA 659
Query: 682 AKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLN 741
A E R DT ++ + C + + + ++Y + E Y +S +
Sbjct: 660 ATEIYRTEQDTLGNFLTEHCITNPLVRVPASDIYRAYKAWCENNNEY---VLSQKIFGTR 716
Query: 742 LKQKGF 747
L ++GF
Sbjct: 717 LSERGF 722
>gi|21234191|ref|NP_639791.1| putative DNA primase/helicase [Streptomyces coelicolor A3(2)]
gi|13620678|emb|CAC36717.1| putative DNA primase/helicase [Streptomyces coelicolor A3(2)]
Length = 506
Score = 100 bits (249), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 108/475 (22%), Positives = 185/475 (38%), Gaps = 51/475 (10%)
Query: 272 FDFEEIGDTAKKRSTFTSLFYHH------GKLIPKGLLASRFSDAYNKAMFSIYKKGHFL 325
FD E + + +S T L G+ GLL +D N +F F
Sbjct: 12 FDPEAVAAQIRAQSPATPLPAQATTERSVGEASANGLLPDTLTDRGNAKLFVKLYANDFR 71
Query: 326 YTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRF 385
+ + WY+ D W + D DL+E + PR
Sbjct: 72 HVPNI-GWYRWDTTR---WQIDEDDTVLWAAG----------DLAE-----TIATHDPRG 112
Query: 386 WFNTDY---RRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETG- 441
F T R S + + + +D LD+ L G++DL TG
Sbjct: 113 LFTTTALHKHRTRAMSTSGMNAMLTQARSAPGMVLKADRLDADPYALCTPRGVVDLRTGL 172
Query: 442 -QKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF----ESEEVMDYFTRCVGMALLG 496
+ P K+ + +T P + P +L ++ F E ++++DY +G ++ G
Sbjct: 173 LRAPDPNKDFHSRSTTVGP--QQMPVPRWLRFLTDTFGADAEGQQMIDYLHLLLGYSITG 230
Query: 497 GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRL 556
AQ + G G +GKS L++++ G+ +A + +P E + L L
Sbjct: 231 DVGAQILPFLWGTGKNGKSVLLDVMMKLLGD--YADAAPPGFLMAKPFEGHPTD--LAEL 286
Query: 557 MGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP----FIVPNK 612
G R+ + SE D+ + A++K +TGGD + AR + P SF P +++ N
Sbjct: 287 HGRRVYVCSEIKPGDKFDEARVKLLTGGDRIKAR-----RMRQDPFSFEPTHKLWLLGNH 341
Query: 613 HLFVRNPDDAWWRRYIVIPFDK--PIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKG 670
V A+WRR +IPF++ P + + A L + W + G + Y+
Sbjct: 342 KPEVGTGGFAFWRRMRLIPFERVVPDDRKIDNLADLLVMEEGPGILAWLIDGARRYLGGD 401
Query: 671 LDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQE 725
D+ PE A + D + ++CC +G L E +L +Y+ + E
Sbjct: 402 RDLTGPERVRIATTAYAETEDHTGRFYEECCRLGPELRAEQTALYAAYTAWCHNE 456
>gi|327309735|ref|YP_004336634.1| P4 family phage/plasmid primase [Pseudonocardia dioxanivorans
CB1190]
gi|326955377|gb|AEA29069.1| phage/plasmid primase, P4 family [Pseudonocardia dioxanivorans
CB1190]
Length = 868
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 88/365 (24%), Positives = 161/365 (44%), Gaps = 20/365 (5%)
Query: 419 SDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE 478
+D DS Q+G +DL TG+ + ++ IT+ + + + + E D +
Sbjct: 128 ADAFDSDPWAFNVQNGTIDLRTGELREHSRGDMITRISPATY-DPDARSELFDKFLARIQ 186
Query: 479 SEEV-MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
+ V CVG L G + G G +GK+ L++ + + G+ Y +
Sbjct: 187 PDPVERRALQLCVGYTLTGFTGEAKLFTANGGGRNGKNVLLDTVAHLLGDYY--RKAPAG 244
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
+ R + A+P + + G+R+V+ SET D + +++K++TG +TAR YG+ +
Sbjct: 245 FLTARKEDGTSASPDMADMRGARMVMASETERGDRLAESRVKELTGDRTITARFLYGDFF 304
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655
S P +F +++ N VR D+ W R +IPF + I RD KL + +
Sbjct: 305 SFRP-TFKIWLLTNYRPSVRGTDEGIWSRLALIPFREYITPEERDPHLTDKLIGLFNGDP 363
Query: 656 K------KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWE 709
W ++G +A+ S + +P+ A E+ R D A++ D C
Sbjct: 364 SDLSGVLTWAVEGARAWASNKT-LALPDTWRAAAEDYRVEQDLMGAFLSDHCIFRPGEIT 422
Query: 710 ESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGL 769
S L Y + Q + R S R ++ LKQ+ +K + + ++ + + G+
Sbjct: 423 TSGDLYAHYVWWCRQAGEHAR---SQRAFSIELKQRPEY--MKNKVLARKSDGRVVFDGM 477
Query: 770 K-LKP 773
+ LKP
Sbjct: 478 RGLKP 482
>gi|254560380|ref|YP_003067475.1| P4 family phage/plasmid primase [Methylobacterium extorquens DM4]
gi|254267658|emb|CAX23504.1| putative P4 family phage/plasmid primase [Methylobacterium
extorquens DM4]
Length = 743
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 103/430 (23%), Positives = 177/430 (41%), Gaps = 51/430 (11%)
Query: 305 SRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKE 364
S SD + F Y ++ D + +Y + +N+VY +TL + ++M+++ S+
Sbjct: 311 SATSDLQSGKDFCAYVGDSLIFCDDQEQFYHR-QNDVY-EPVTLAHVKETVMDYVGSL-- 366
Query: 365 DVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDL--- 421
D R N EE K K+ +I ++ +
Sbjct: 367 -------------------------DVDRTNFEEMRKLKAAQSVGRINAIVDVSRSILRI 401
Query: 422 ----LDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF 477
D+ G ++G+LDL TG+ V+P + +T+ GT + FL + F
Sbjct: 402 SSSKFDTDPFLAGCKNGVLDLRTGELVEP--DCIVTRRLGTNYDSDAWCHLFLTFMHQVF 459
Query: 478 ES-EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEAS 536
E +E + + R VG L G Q + G G +GKST + +I+ G +Y + +
Sbjct: 460 EGDQEKIAFVRRAVGYTLTGSTAGQCMFLVIGTGANGKSTFLKVIQALMG-EYGGSIPSH 518
Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNT 596
+M ++ + L G R V SE ++ AK+K MTGGD + R YG
Sbjct: 519 SMMASK--FGNDKTDDIASLDGRRFVSASEGEMGQKLAVAKVKLMTGGDTIACRPLYGKY 576
Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI----ANRDASFAQKLETKYT 652
+ P F + N + D+A WRR VI F P+ A RD +L+ +
Sbjct: 577 FDMKP-EFKIWFGTNDLPVIAGGDEAIWRRLYVIDF--PVSFTEAQRDGGLFDRLKLELP 633
Query: 653 LEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEE-RQGTDTYQAWIDDCCDIGENLWEES 711
W L+GV+ + P ++ + R +DT ++I+ CD E
Sbjct: 634 -GILNWALQGVRELGGMKSNFLNPPASVRNETNRYRSDSDTVASFIEAGCDRVEGAVVMM 692
Query: 712 HSLAKSYSEY 721
+ L ++Y+ +
Sbjct: 693 NVLHETYTRW 702
>gi|206600076|ref|YP_002242151.1| gp94 [Mycobacterium phage Konstantine]
gi|206287164|gb|ACI12509.1| gp94 [Mycobacterium phage Konstantine]
Length = 995
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 74/266 (27%), Positives = 133/266 (50%), Gaps = 22/266 (8%)
Query: 416 SITSDL--LDSSSRFLGEQDGILDLET-GQKVKPTK-ELYITKSTGTPFVEGEPS----- 466
+T D+ LD+ R +G +G+++L G +++ + + +IT +T TP++E +
Sbjct: 605 GVTVDINDLDNDGRLIGVANGVIELGVDGVRLRDAEAQDFITLNTKTPYLEPDQMSGTQK 664
Query: 467 ---QEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKY 523
Q++ + + + E++ +G L+GGN + FI ++G +GKST+ NL
Sbjct: 665 IGMQKWEEYLERFLPDEDIRRTAQVALGHCLIGGNPEKIFIVLKGDSNTGKSTMANLCAA 724
Query: 524 AFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTG 583
A G+ Y + A + I QN K NP L + + R+V+ +E +E D+I+A+ +K++TG
Sbjct: 725 ALGD-YAMTASLT-IYQNH-----KLNPLLAKALTRRMVVTTELSETDKISASMLKRITG 777
Query: 584 G-DCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--D 640
G D ++A L N E F P + N + D A R VIPF+ ++ + D
Sbjct: 778 GSDLISAELKGSNVLVERVPQFVPIVATNSVPSIEGADKALRNRLYVIPFNVVVSEQEDD 837
Query: 641 ASFAQKLETKYTLEAKKWFLKGVKAY 666
A ++ W ++G K Y
Sbjct: 838 KEAATVMKAVGLPAVLHWLVEGYKIY 863
>gi|21223967|ref|NP_629746.1| ATP binding protein [Streptomyces coelicolor A3(2)]
gi|3192005|emb|CAA19404.1| putative ATP binding protein [Streptomyces coelicolor A3(2)]
Length = 756
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 82/319 (25%), Positives = 148/319 (46%), Gaps = 13/319 (4%)
Query: 410 EAGSIFSITSDL--LDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ 467
EA + I +++ D+ L +G++DL TG+ + ++ +T+ T +
Sbjct: 394 EASVMLPIETEISDFDADPHKLLVGNGVVDLRTGELLPVDRKYLLTRGTTVEYDPNADCP 453
Query: 468 EFLDLVSGYFESE-EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFG 526
++D + F+ + E+++Y R GM L+G N Q + G G SGK+TL ++ G
Sbjct: 454 MWMDFLGWAFQGDIEMIEYIQRMFGMCLIGNNAHQVAFFLYGPGRSGKTTLTRVLSRLLG 513
Query: 527 NQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDC 586
+ Y +A+ S ++ + N L RL G+R+V+ SET + IN A+ K+ TG D
Sbjct: 514 D-YATSADLSVFNES----SSGHNEPLARLAGARLVVFSETRQGQRINEAQFKKFTGEDT 568
Query: 587 MTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDASFA 644
+TA + + PA FTP + N + D RR VIP I++ ++
Sbjct: 569 LTASYKNKSWFEFLPA-FTPVMFGNAQPSIAF-DSGVERRMKVIPMRAQISDGQKNPKLV 626
Query: 645 QKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIG 704
+++ W ++G + ++ D P+V KE +R+ D +I++C
Sbjct: 627 EQMMLNEGPAIMAWAVEGARLTAAESFVPDPPQVAQAVKEYKRE-NDHIGDFIEECLVFD 685
Query: 705 ENLWEESHSLAKSYSEYRE 723
E S + YS++ E
Sbjct: 686 EGATVASDVVWGRYSKWIE 704
>gi|325662086|ref|ZP_08150705.1| hypothetical protein HMPREF0490_01443 [Lachnospiraceae bacterium
4_1_37FAA]
gi|325471749|gb|EGC74968.1| hypothetical protein HMPREF0490_01443 [Lachnospiraceae bacterium
4_1_37FAA]
Length = 766
Score = 100 bits (248), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 94/344 (27%), Positives = 152/344 (44%), Gaps = 18/344 (5%)
Query: 411 AGSIFSITSDLLDSSSRFLGEQDGILDLETGQ--KVKPTKELYITKSTG-TPFVEGEPSQ 467
A + +I LD + + +++E G + E ITK T +P G+
Sbjct: 410 AKPMLAINVSELDKNPFLINTPQSTINMEKGMVGAREHNPEDLITKITACSPSEVGKTIW 469
Query: 468 EFLDLVSGYFES-EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFG 526
E D ++ +F +E+++Y + VG+A +G + I G G +GKST N I G
Sbjct: 470 E--DALNTFFVGDQELIEYVQQTVGVAAVGKVFQEHMIIAYGGGANGKSTFWNTIFRVLG 527
Query: 527 NQY-VINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGD 585
N I+AEA + R P + L G R++I SE E +N A +KQ+ D
Sbjct: 528 NYAGKISAEALTVNCKR-----NVKPEMAELKGKRLIIASEMEEGMRLNTATVKQLCSTD 582
Query: 586 CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASF 643
+ A Y + +S P S T + N V DD WRR +VIPF+ I A+ ++
Sbjct: 583 EIQAEKKYKDPFSFVP-SHTLVLYTNHLPKVGANDDGIWRRLVVIPFNAKITGASDIKNY 641
Query: 644 AQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDI 703
A L W ++G + I+ P+V A E R+ D +I++CCD+
Sbjct: 642 ADYLYDNAGGYIMSWIIEGARKAIATDFKTKQPKVVEDAIESYREDNDWLGQFIEECCDV 701
Query: 704 GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGF 747
+ +S L ++Y + Y R ST ++++ GF
Sbjct: 702 DKTFTAKSGELYQAYRAHCTLNGEYIR---STSDFYSSMEKAGF 742
>gi|291484307|dbj|BAI85382.1| hypothetical protein BSNT_02817 [Bacillus subtilis subsp. natto
BEST195]
Length = 805
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 81/347 (23%), Positives = 151/347 (43%), Gaps = 18/347 (5%)
Query: 409 LEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE 468
L+ + ++ LDS ++G++DL+TG+ + ++ TK + + +
Sbjct: 415 LDTRPMVAVRKQDLDSHKYLFNCENGVIDLKTGELLPHDRDFLFTKISSVAYQKDADCPN 474
Query: 469 FLDLVSGYFESE------EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIK 522
+ + F E E++++ + +G +L G Q + G G +GKST +N ++
Sbjct: 475 WKAFLESIFIDEQGQPNYEIINFMQKAIGYSLTGDTTEQVMFFLFGNGRNGKSTFINTVQ 534
Query: 523 YAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMT 582
G+ Y + ++ + + N + RL G+R V E+ E +++ + +KQ+T
Sbjct: 535 QLLGD-YGRQTNSDTFIKKKNDSS--INNDIARLDGARFVSAVESEEGQQLSESLVKQIT 591
Query: 583 GGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--D 640
GG+ M+AR Y E F F N V+ D+ WRR ++PF I D
Sbjct: 592 GGEKMSARF-LRQEYFEFTPEFKVFFTTNHKPIVKGSDEGIWRRIRLVPFTVTIPKEKVD 650
Query: 641 ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDC 700
QKL + +W ++G + +GL PEV KA E R+ D ++ +
Sbjct: 651 KKLPQKLAAEMP-GILRWAVEGCLKWQKEGLKE--PEVIRKATEGYREDMDILGPYMSER 707
Query: 701 CDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGF 747
C + + E+ L Y +Y+ D + R ++ +GF
Sbjct: 708 CVVHPSAKIEAKEL---YKDYKNWCYENDEIELKNRAFYRQIEIRGF 751
>gi|30795061|ref|NP_851511.1| putative DNA primase/helicase [Streptomyces rochei]
Length = 471
Score = 99.4 bits (246), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 104/458 (22%), Positives = 187/458 (40%), Gaps = 34/458 (7%)
Query: 295 GKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITAS 354
G+ GLL SD N +F + + + W++ D W + D
Sbjct: 9 GEATADGLLPDTLSDRGNAKLFVSFYADDYRHVPGL-GWFRWDGTR---WQVDEDDTVLW 64
Query: 355 IMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSI 414
L + S +P + + R +RR+ + + Q+ A +
Sbjct: 65 AAGDLAELLA-----STDPRGVHSAAALQR------HRRRALSTSGMNAMLTQAKSAPGM 113
Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQK--VKPTKELYITKSTGTPFVEGEPSQEFLDL 472
+ + LLD+ L GI+DL TGQ P ++ + + P E P+ ++
Sbjct: 114 V-LNAALLDADPYALCTPAGIVDLRTGQTRTSHPDRDFHSCSTAVAP--EAVPTPRWVRF 170
Query: 473 VSGYF----ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528
++ F E +E++ + +G ++ G AQ + G G +GKS L++++ G+
Sbjct: 171 LTDTFGEGAEGQEMIGFLQLLLGYSITGDVGAQVMPFLFGSGKNGKSVLLDVLMKLLGD- 229
Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588
+A + RP E + L L G R+V+ SE D + A++K +TGGD +
Sbjct: 230 -YADAAPPGFLMARPYEGHPTD--LAELHGRRVVVCSEVKPGDRFDEARVKLLTGGDRIK 286
Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK--PIANRDASFAQK 646
AR + +S P + +++ N V A+WRR +IPF++ P + + A
Sbjct: 287 ARRMRQDFFSFRP-THKLWLLGNHRPEVGTGGFAFWRRLRLIPFERVVPDDRKVDNLADI 345
Query: 647 LETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGEN 706
L T+ W + G + Y+S D+ PE A + D ++ + C I
Sbjct: 346 LVTEEGPGILNWLIVGARRYLSGEKDLTGPERVRIATTAYAETEDHTGRFLGESCTIEPG 405
Query: 707 LWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQ 744
L E L Y+ YR N + +S+R +++
Sbjct: 406 LRAEQTQL---YAAYRAWCQNEEAPAVSSRAFAARVRE 440
>gi|302035479|ref|YP_003795801.1| putative DNA primase' [Candidatus Nitrospira defluvii]
gi|300603543|emb|CBK39873.1| putative DNA primase, P4 family (phage related) [Candidatus
Nitrospira defluvii]
Length = 763
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 100/367 (27%), Positives = 154/367 (41%), Gaps = 35/367 (9%)
Query: 418 TSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITK-STGTPFVEGEPS------QEFL 470
T++ D+ L G++DL TG+ ++ +TK +T TP +G P + FL
Sbjct: 409 TAEEWDADVWALNTPGGVVDLRTGRMRPHRRDDRMTKVTTATP--QGNPDSACPTWRGFL 466
Query: 471 DLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530
V+G ++M Y VG L G + G G +GKS +N++ G+ Y
Sbjct: 467 TDVTG--GDADLMAYLQLMVGYCLTGVTSEHALFFLYGTGANGKSVFVNVLTTILGD-YA 523
Query: 531 INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR 590
NA M+ R + L L G+R V ET + N +K+K +TGGD ++AR
Sbjct: 524 ANAPMDTFMEAR---TDRHPTDLAGLRGARFVSSIETEQGRRWNESKVKAITGGDKVSAR 580
Query: 591 LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK--PIANRDASFAQKLE 648
+ + P F I N +RN D+A RR +IPF P RD +KL
Sbjct: 581 FMRQDFFEYLP-QFKLVIAGNHKPSIRNVDEAMKRRLHLIPFTVTIPPERRDGRLTEKL- 638
Query: 649 TKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLW 708
K W ++G + +GL P + A EE + D WI++ C + ++
Sbjct: 639 LKERDGILAWAVEGCSRWQRQGLKP--PASVVSATEEYFEAEDALGQWIEERCLLAKSHR 696
Query: 709 EESHSLAKSYSEYREQELNY--DRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRII 766
E L + E+ E+ Y KR S T ++ GG R I
Sbjct: 697 EGVSELFADWREWAERAGEYVGSVKRFSELMATRKFEKCRLTGG------------ARAI 744
Query: 767 KGLKLKP 773
G+ L+P
Sbjct: 745 AGIALRP 751
>gi|302538856|ref|ZP_07291198.1| conserved hypothetical protein [Streptomyces sp. C]
gi|302447751|gb|EFL19567.1| conserved hypothetical protein [Streptomyces sp. C]
Length = 548
Score = 99.0 bits (245), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 87/349 (24%), Positives = 154/349 (44%), Gaps = 26/349 (7%)
Query: 393 RQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQ--KVKPTKEL 450
R+ S K+ +A ++ D LD L G++DL TG+ K P ++L
Sbjct: 161 RKRAMSTSGVKAMLSQAKASPELALDPDTLDGDKYALCTPAGVVDLRTGELRKPDPLRDL 220
Query: 451 YITKSTGTPFVEGEPSQEFLDLVSGYF----ESEEVMDYFTRCVGMALLGGNKAQRFIHI 506
+ + P E P+ F ++ F + +E++ + +G ++ G Q +
Sbjct: 221 HSRATYLAP--EASPTPRFARFLTETFGDDDKGKEMITFVHLLLGYSITGDVGGQVLPFL 278
Query: 507 RGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKAN---PSLIRLMGSRIVI 563
G+G +GKS LM+++ G+ Y A +M E GK N L L G R+ +
Sbjct: 279 YGIGANGKSALMDIVIKILGD-YADVAPPGFLM-----ERGKFNEHSTELTELHGRRLFV 332
Query: 564 ISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAW 623
SE +D+ + A++K +TGGD + AR + +S P + +++ N V A+
Sbjct: 333 CSELKPHDKFDEARVKLLTGGDRLKARRMRQDYFSFEP-THKLWLLGNHRPEVGTGGHAF 391
Query: 624 WRRYIVIPFDK--PIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLK 681
WRR +IPFDK P + + A++L W ++G AY+ + P V
Sbjct: 392 WRRIRLIPFDKVVPDHRKIDNLAEELVNHEGPGILHWMIQGAMAYLRTKPSLTGPTVVRT 451
Query: 682 AKEEERQGTDTYQAWIDDCCDIGENLWE------ESHSLAKSYSEYREQ 724
A + D ++ +CC G+ E E +L ++YS + ++
Sbjct: 452 ATQAYATTEDHIGRFLAECCTSGDGGEEPRDFKVEQGALYRAYSTWCQE 500
>gi|152981706|ref|YP_001354386.1| hypothetical protein mma_2696 [Janthinobacterium sp. Marseille]
gi|151281783|gb|ABR90193.1| bacteriophage-related protein [Janthinobacterium sp. Marseille]
Length = 758
Score = 98.6 bits (244), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 99/357 (27%), Positives = 150/357 (42%), Gaps = 29/357 (8%)
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITK-STGTPFVEGEPSQEFLDLVSGYFESEE 481
D+ + L G++DL TG+ + ++ +TK ST TP + FL V+G +
Sbjct: 413 DADTWALNTPGGVVDLRTGRMREHRRDDRMTKVSTATPKGDCPTWHGFLADVTG--GDAD 470
Query: 482 VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQN 541
++ Y VG L G + G G +GKS +N+I G+ Y NA M
Sbjct: 471 LIAYLQLMVGYCLTGITSEHALFFLYGTGANGKSVFVNVITTILGD-YAANAPMDTFMDA 529
Query: 542 RPPEAGKANPS-LIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600
R +P+ L L G+R V ET + N +K+K +TGGD ++AR + +
Sbjct: 530 R----NDRHPTDLAGLRGARFVSSIETEQGRRWNESKVKAITGGDKVSARFMRQDFFEYV 585
Query: 601 PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK--PIANRDASFAQKLETKYTLEAKKW 658
P F I N +RN D+A RR +IPF P RD KL K W
Sbjct: 586 P-QFKLVIAGNHKPSIRNVDEAMKRRLHLIPFTVTIPPEKRDGRLTDKL-LKERDGILAW 643
Query: 659 FLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSY 718
++G + +GL P + A EE + D WI++ C + + E L +
Sbjct: 644 AVEGCSRWQQQGLKP--PASVVSATEEYFEAEDALGQWIEERCLLAKTSREGVSDLFSDW 701
Query: 719 SEYREQ--ELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773
E+ E+ E KR S T ++ GG+ R + GL L+P
Sbjct: 702 REWAERAGEFVGSVKRFSELMATRKFEKCRLTGGV------------RGLTGLSLRP 746
>gi|285019151|ref|YP_003376862.1| bacteriophage related protein [Xanthomonas albilineans GPE PC73]
gi|283474369|emb|CBA16870.1| putative bacteriophage related protein [Xanthomonas albilineans]
Length = 754
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 85/284 (29%), Positives = 126/284 (44%), Gaps = 16/284 (5%)
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPS-QEFLDLVSGYFESEE 481
D+ L G++DL TG++ + ITK T +G P Q FL ++ + E
Sbjct: 408 DADPWLLNTPGGVVDLRTGRRRTHERADRITKITTATPSDGCPIWQRFLAEITD--QDNE 465
Query: 482 VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQN 541
+ Y R VG AL G + + G G +GKS +N + FG+ Y NA M+
Sbjct: 466 LQAYLQRMVGYALTGSTQEHALFFLYGTGANGKSVFVNTLVTIFGD-YAANAPMDTFMET 524
Query: 542 RPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESP 601
R A + + L GSR V ET + +K+K +TGGD ++AR + + P
Sbjct: 525 R---ADRHPTDMAGLRGSRFVAAIETEQGRRWAESKLKNLTGGDKISARFMRQDFFEFFP 581
Query: 602 ASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF--DKPIANRDASFAQKL--ETKYTLEAKK 657
F F+ N +RN D+A RR +IPF P RD +KL E L
Sbjct: 582 -QFKLFVAGNHRPAIRNIDEAMKRRLHLIPFTITVPPERRDKHLQEKLLNERDGIL---A 637
Query: 658 WFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCC 701
W ++G + G + P+ L+A EE + D WI + C
Sbjct: 638 WAVQGCLYWQRLG-RLAPPQQVLQATEEYFEAEDALGRWIGERC 680
>gi|228963014|ref|ZP_04124222.1| hypothetical protein bthur0005_62410 [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|228796668|gb|EEM44069.1| hypothetical protein bthur0005_62410 [Bacillus thuringiensis
serovar pakistani str. T13001]
Length = 791
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 80/313 (25%), Positives = 140/313 (44%), Gaps = 17/313 (5%)
Query: 422 LDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPS---QEFLDLVSGYFE 478
D+ L ++G++DL+TG+ ++ +TK F +GE + FLD + E
Sbjct: 419 FDTHQYLLNVENGVIDLKTGKLSPHDRDFMLTKMVNIEFKQGEDCPNWKLFLDSIFKDVE 478
Query: 479 SE---EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535
E++++ + +G +L Q + G G +GKST +N IK GN
Sbjct: 479 GNTDYELIEFIQKSIGYSLTSDISEQVMFFLYGSGRNGKSTFINTIKSLLGN--YAKQTN 536
Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595
SD + ++G N + RL G+R V E+ E +++ A +KQ+TGG+ ++AR
Sbjct: 537 SDTFIKKKHDSG-VNNDIARLAGARFVSAVESEEGQQLSEALVKQITGGEPISARFLRQE 595
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
+ +PA F F N ++ D+ WRR +IPF I +KL K ++E
Sbjct: 596 FFEFTPA-FKVFFTTNHKPIIKGMDEGIWRRVRMIPFIVTIPKDKVD--RKLPEKLSMEM 652
Query: 656 K---KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESH 712
W ++G + + L P+ A ++ D + ++ D C + E+
Sbjct: 653 SGILNWAIEGCLKWQRESLGE--PKAIQDATNHYKEEMDILEPFLLDKCFLHPQAKMEAK 710
Query: 713 SLAKSYSEYREQE 725
L YS + +E
Sbjct: 711 ELYSEYSRWCNEE 723
>gi|327134279|dbj|BAC76547.2| putative DNA primase/helicase [Streptomyces rochei]
Length = 500
Score = 98.6 bits (244), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 104/458 (22%), Positives = 187/458 (40%), Gaps = 34/458 (7%)
Query: 295 GKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITAS 354
G+ GLL SD N +F + + + W++ D W + D
Sbjct: 38 GEATADGLLPDTLSDRGNAKLFVSFYADDYRHVPGL-GWFRWDGTR---WQVDEDDTVLW 93
Query: 355 IMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSI 414
L + S +P + + R +RR+ + + Q+ A +
Sbjct: 94 AAGDLAELLA-----STDPRGVHSAAALQR------HRRRALSTSGMNAMLTQAKSAPGM 142
Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQK--VKPTKELYITKSTGTPFVEGEPSQEFLDL 472
+ + LLD+ L GI+DL TGQ P ++ + + P E P+ ++
Sbjct: 143 V-LNAALLDADPYALCTPAGIVDLRTGQTRTSHPDRDFHSCSTAVAP--EAVPTPRWVRF 199
Query: 473 VSGYF----ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528
++ F E +E++ + +G ++ G AQ + G G +GKS L++++ G+
Sbjct: 200 LTDTFGEGAEGQEMIGFLQLLLGYSITGDVGAQVMPFLFGSGKNGKSVLLDVLMKLLGD- 258
Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588
+A + RP E + L L G R+V+ SE D + A++K +TGGD +
Sbjct: 259 -YADAAPPGFLMARPYEGHPTD--LAELHGRRVVVCSEVKPGDRFDEARVKLLTGGDRIK 315
Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK--PIANRDASFAQK 646
AR + +S P + +++ N V A+WRR +IPF++ P + + A
Sbjct: 316 ARRMRQDFFSFRP-THKLWLLGNHRPEVGTGGFAFWRRLRLIPFERVVPDDRKVDNLADI 374
Query: 647 LETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGEN 706
L T+ W + G + Y+S D+ PE A + D ++ + C I
Sbjct: 375 LVTEEGPGILNWLIVGARRYLSGEKDLTGPERVRIATTAYAETEDHTGRFLGESCTIEPG 434
Query: 707 LWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQ 744
L E L Y+ YR N + +S+R +++
Sbjct: 435 LRAEQTQL---YAAYRAWCQNEEAPAVSSRAFAARVRE 469
>gi|6960323|gb|AAF12794.2|AF195093_1 putative DNA-primase/helicase [Streptomyces coelicolor A3(2)]
Length = 426
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 86/361 (23%), Positives = 152/361 (42%), Gaps = 26/361 (7%)
Query: 380 SKSPRFWFNTDY---RRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGIL 436
+ PR F T R S + + + +D LD+ L G++
Sbjct: 27 THDPRGLFTTTALHKHRTRAMSTSGMNAMLTQARSAPGMVLKADRLDADPYALCTPRGVV 86
Query: 437 DLETG--QKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF----ESEEVMDYFTRCV 490
DL TG + P K+ + +T P + P +L ++ F E ++++DY +
Sbjct: 87 DLRTGLLRAPDPNKDFHSRSTTVGP--QQMPVPRWLRFLTDTFGADAEGQQMIDYLHLLL 144
Query: 491 GMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKAN 550
G ++ G AQ + G G +GKS L++++ G+ +A + +P E +
Sbjct: 145 GYSITGDVGAQILPFLWGTGKNGKSVLLDVMMKLLGD--YADAAPPGFLMAKPFEGHPTD 202
Query: 551 PSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP---- 606
L L G R+ + SE D+ + A++K +TGGD + AR + P SF P
Sbjct: 203 --LAELHGRRVYVCSEIKPGDKFDEARVKLLTGGDRIKAR-----RMRQDPFSFEPTHKL 255
Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDK--PIANRDASFAQKLETKYTLEAKKWFLKGVK 664
+++ N V A+WRR +IPF++ P + + A L + W + G +
Sbjct: 256 WLLGNHKPEVGTGGFAFWRRMRLIPFERVVPDDRKIDNLADLLVMEEGPGILAWLIDGAR 315
Query: 665 AYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQ 724
Y+ D+ PE A + D + ++CC +G L E +L +Y+ +
Sbjct: 316 RYLGGDRDLTGPERVRIATTAYAETEDHTGRFYEECCRLGPELRAEQTALYAAYTAWCHN 375
Query: 725 E 725
E
Sbjct: 376 E 376
>gi|297587097|ref|ZP_06945742.1| P4 family prophage LambdaSa04 [Finegoldia magna ATCC 53516]
gi|297575078|gb|EFH93797.1| P4 family prophage LambdaSa04 [Finegoldia magna ATCC 53516]
Length = 733
Score = 98.2 bits (243), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 101/381 (26%), Positives = 159/381 (41%), Gaps = 39/381 (10%)
Query: 411 AGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFL 470
A S+ + ++ LD+ + L G++DL+T + + Y K T PS++ +
Sbjct: 379 AKSLLEVKNEKLDADAFILNTPVGVIDLKTSEIKEHDPSYYCAKITALA-----PSKDNM 433
Query: 471 DL-------VSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKY 523
D+ V+G +E +++ G L+G + + G GG+GKST+ N +
Sbjct: 434 DMWIATLRDVTG--GDDEFINFLKFHAGSTLIGHVYEEALLIAYGDGGNGKSTVFNSEAH 491
Query: 524 AFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTG 583
G+ Y A + A L L G R ++ SET E ++++ +KQ+
Sbjct: 492 VLGD-YAGKIPAESLTT----RAKNVKVDLAELCGKRFILASETEEGQRLSSSMLKQIAS 546
Query: 584 GDCMTARLNYGNTYSESPASFTPF---IVPNKHL-FVRNPDDAWWRRYIVIPFDKPIANR 639
D ++A Y +P SFTP I+ HL V + D WRR +V PF I N
Sbjct: 547 VDDISAERKY-----YAPFSFTPTHSTILYTNHLPKVGSNDRGTWRRIVVAPFSVAIKNP 601
Query: 640 DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD 699
+ KL K +W ++G K YI G V AK+ ++ D +I D
Sbjct: 602 KTDYIDKLLEKAGEAILQWMIEGAKEYIDAGFKYPKCNVVDDAKKSYKEENDWINHFISD 661
Query: 700 CCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKE 759
C G N E S L + Y E+ Y R + R + L +G+ KR E
Sbjct: 662 KCIKGTNYKEMSARLYQVYREWAGSNGEYIR---NNRDFSRALIAEGYEK--KRTNRGIE 716
Query: 760 WKSKRIIKGLKLKPAFESVDD 780
W G+ + ES DD
Sbjct: 717 W------GGITINDLMESEDD 731
>gi|297660619|ref|YP_003710330.1| phage/plasmid primase [Waddlia chondrophila WSU 86-1044]
gi|297377495|gb|ADI39324.1| phage/plasmid primase [Waddlia chondrophila WSU 86-1044]
Length = 683
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 79/279 (28%), Positives = 126/279 (45%), Gaps = 12/279 (4%)
Query: 433 DGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY-FESEEVMDYFTRCVG 491
+GI++L+TG +E YI K T + + +FL + +E+ + R +G
Sbjct: 347 NGIINLKTGDLETAQRENYIKKVCPTSYEKNANCPKFLKFLDDITLGDKELSSFIGRVIG 406
Query: 492 MALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANP 551
ALLG K ++ + G G +GK TLM++I++ G + Q PP + NP
Sbjct: 407 YALLGVPKEEKIFYFYGNGRNGKGTLMHVIQHVLGALSKTFPSEMLLSQRNPPSSSSPNP 466
Query: 552 SLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPN 611
L L G R+ + SE NE +I++AK+K ++G D + R Y N + + T + N
Sbjct: 467 ELANLEGVRMAVFSEINEGRKIDSAKVKNLSGRDIIPCRRLYSNVDLQITPTHTMILQTN 526
Query: 612 KHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTL------EAK---KWFLKG 662
+ D A W R I+IPF + E K +L EAK KW + G
Sbjct: 527 YKPKAPSEDKALWSRNILIPFKARFVKEPKDGENEREIKESLKDELLEEAKGILKWMVDG 586
Query: 663 VKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCC 701
Y GL V P+ + E R+ D ++++ C
Sbjct: 587 CLEYQEIGLKV--PQSVIDQTEGYRKENDGIGCFLEEMC 623
>gi|239906140|ref|YP_002952879.1| hypothetical protein DMR_15020 [Desulfovibrio magneticus RS-1]
gi|239796004|dbj|BAH74993.1| hypothetical protein [Desulfovibrio magneticus RS-1]
Length = 482
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 101/385 (26%), Positives = 164/385 (42%), Gaps = 23/385 (5%)
Query: 390 DYRRQNVEENSKAKSTAQSLEAGSIF-SITSDL--LDSSSRFLGEQDGILDLETGQKVKP 446
D + ++ SKA+ A L+ SI + + L LD Q+G +DL TG+ K
Sbjct: 110 DVLKWAIKSASKARMQAM-LDVASILPQMATKLKELDKDEYLFNCQNGTIDLRTGELRKH 168
Query: 447 TKELYITKSTGTPFVEGEPSQEFLDLVSGY-FESEEVMDYFTRCVGMALLGGNKAQRFIH 505
+T + + P E+L V + + +Y +G L G Q
Sbjct: 169 NLSDMLTHISDVSYRPDAPCPEWLKFVEDITLGNWHLQEYLQEVLGYCLCGSVSEQIMFV 228
Query: 506 IRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIIS 565
+ G G +GKST +N AF N A+ + E+ L RL+G+R V
Sbjct: 229 LVGKGANGKSTFLN----AFINVLGTYAKTTPAHTFVKSESRALRNDLARLVGARFVSAV 284
Query: 566 ETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625
E N +++ A +K ++GGD + AR G + E F+ N V DD +R
Sbjct: 285 EINSGKKLDEALVKGLSGGDRVAARF-IGKEFFEYTPQAKFFLAVNVFPEVSGADDGIYR 343
Query: 626 RYIVIPFDKPIA----NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLK 681
R VIPFD A ++D K E + L W ++G K + + ++ PEV +
Sbjct: 344 RLRVIPFDAAFAPHQMDKDKPAKLKKEAEGILA---WAVEGFKRWYERKSLLE-PEVVTE 399
Query: 682 AKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLN 741
A R+ D +++IDD C + + SL +Y E+ +Q + +S + +
Sbjct: 400 ASMAFREQMDAVRSFIDDYCILDPGASVQVGSLYDAYIEWAKQN---ALEPMSKKQFGTH 456
Query: 742 LKQKGFIGGIKREKIEKEWKSKRII 766
+ QKGF G + + WK + I
Sbjct: 457 VGQKGFTQG--KSGKTRSWKGLKFI 479
>gi|300689921|ref|YP_003750916.1| DNA primase, phage/plasmid [Ralstonia solanacearum PSI07]
gi|299076981|emb|CBJ49594.1| putative DNA primase, phage/plasmid [Ralstonia solanacearum PSI07]
Length = 759
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 81/289 (28%), Positives = 128/289 (44%), Gaps = 12/289 (4%)
Query: 416 SITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITK-STGTPFVEGEPSQEFLDLVS 474
+ T+ D+ L ++DL TG++ ++ +TK +T TP + ++FL V+
Sbjct: 406 AATTSEWDADPWLLNTPGSVVDLRTGRQRPHDRDDRMTKITTATPGGDCPTWRQFLAEVT 465
Query: 475 GYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
G E+ Y R G AL G + + G G +GKS +N + G+ Y NA
Sbjct: 466 G--GDAELQAYLQRMAGYALTGSTQEHALFFLYGTGANGKSVFVNTLATILGD-YAANAA 522
Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
M+ R + + L G+R V ET + +K+K +TGGD ++AR
Sbjct: 523 MDTFMETR---TDRHPTDMAGLRGARFVAAIETEQGRRWAESKVKNLTGGDKISARFMRQ 579
Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF--DKPIANRDASFAQKLETKYT 652
+ + P F F+ N +RN D+A RR +IPF P RD QKL +
Sbjct: 580 DFFEFFP-QFKLFVAGNHKPAIRNIDEAMKRRLHLIPFTVTVPPERRDKHLQQKLLAERD 638
Query: 653 LEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCC 701
W ++G + G +D P+ L A EE + D W+D+ C
Sbjct: 639 -GILAWAVQGCLDWQRLG-RLDPPQQVLDATEEYFEAEDALGRWLDERC 685
>gi|254438338|ref|ZP_05051832.1| D5 N-terminal domain family protein, putative [Octadecabacter
antarcticus 307]
gi|198253784|gb|EDY78098.1| D5 N-terminal domain family protein, putative [Octadecabacter
antarcticus 307]
Length = 508
Score = 98.2 bits (243), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 73/256 (28%), Positives = 121/256 (47%), Gaps = 11/256 (4%)
Query: 420 DLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGT-PFVEGEPSQEFLDLVSGYFE 478
D D++ LG G++DL TG+ T +T+ST P G + +L+ +S FE
Sbjct: 129 DDFDANPELLGTPGGVIDLRTGEVRSATVGDKVTQSTDVAPAQAGASASRWLEFLSQVFE 188
Query: 479 SE-EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
+ E +++ R VG AL+G AQ+F + G G +GKS L +++ G+ Y A A
Sbjct: 189 GDKETLEFIERLVGSALVGNVSAQKFFVLYGRGSNGKSVLRDVVSCLVGS-YAGTASAKV 247
Query: 538 IMQNRPPEAGKANPSLI-RLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNT 596
MQ+ +P+ I L G R+V+ SE N A +K++TGG+ MT R + N
Sbjct: 248 FMQSHSDR----HPTEIASLAGKRVVMASEVPAGRSWNDALLKELTGGEKMTTRWVHQNE 303
Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLE 654
+S +P F F +A RR ++I F + +D + L +
Sbjct: 304 FSFTPRGTLIFTANTLPSFT-GAQEAMLRRIVIIEFKRNFTEDEQDPNLVADLISTEGSA 362
Query: 655 AKKWFLKGVKAYISKG 670
+W + G + +++ G
Sbjct: 363 ILRWAIDGARKFLADG 378
>gi|300909462|ref|ZP_07126923.1| P4 family prophage LambdaSa04 [Lactobacillus reuteri SD2112]
gi|300893327|gb|EFK86686.1| P4 family prophage LambdaSa04 [Lactobacillus reuteri SD2112]
Length = 751
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 95/361 (26%), Positives = 153/361 (42%), Gaps = 32/361 (8%)
Query: 422 LDSSSRFLGEQDGILDLETG---QKVKPTKELYITKSTGTPFVEGEPSQEFLD--LVSGY 476
D+ L +G +L+ G Q+ EL ITKST V G L + +
Sbjct: 405 FDADPFLLNTPNGAFNLKKGMHGQQEIQADEL-ITKSTSC--VPGNQGASLWQEALTTFF 461
Query: 477 FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN---QYVINA 533
+ +++Y VG+ +G + I G G +GKST N I G +A
Sbjct: 462 CGDQALINYVQEIVGLVAIGQVYLEALIIAYGSGRNGKSTFWNTIANVLGTYTGHLSADA 521
Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593
+ + +N PE + + G R++I +E E +N + +KQ+ D + A Y
Sbjct: 522 LTTGVRRNVKPE-------MAEVKGKRLIISAELEEGKRLNTSIVKQLCSTDEIYAEKKY 574
Query: 594 GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD--ASFAQKLETKY 651
+S +P S T + N V D+ WRR IVIPF IA R+ ++AQ+L K
Sbjct: 575 MKPFSFTP-SHTIVLYTNYLPHVGGNDEGIWRRLIVIPFKAKIAKRNDIKNYAQRLTEKA 633
Query: 652 TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEES 711
+W ++G + I + + P KA D ++++ C++ + ++S
Sbjct: 634 GPAVLQWIIEGAQRTIQQNYRLTTPAAVEKAVNAYHADNDWLGHFLNENCELDPSYEQKS 693
Query: 712 HSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771
L + Y EY + Y R ST LK GF + ++ R IKGL+L
Sbjct: 694 GDLYQKYREYCQGIGEYIR---STTDFYTALKNAGF--------QRQHKQNGRFIKGLRL 742
Query: 772 K 772
K
Sbjct: 743 K 743
>gi|259502601|ref|ZP_05745503.1| P4 family prophage LambdaSa04 [Lactobacillus antri DSM 16041]
gi|259169416|gb|EEW53911.1| P4 family prophage LambdaSa04 [Lactobacillus antri DSM 16041]
Length = 751
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 97/348 (27%), Positives = 153/348 (43%), Gaps = 34/348 (9%)
Query: 441 GQKVKPTKELYITKSTG-TPFVEGEPS-QEFLDLVSGYFESEEVMDYFTRCVGMALLGGN 498
GQ+ EL ITKST P +G QE L + + + +++Y VG+ +G
Sbjct: 427 GQQEIQADEL-ITKSTSCVPGSQGASLWQE--ALTTFFCGDQALINYVQEIVGLVAIGQV 483
Query: 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGN---QYVINAEASDIMQNRPPEAGKANPSLIR 555
+ I G G +GKST N I G +A + + +N PE +
Sbjct: 484 YLEALIIAYGSGRNGKSTFWNTIANVLGTYTGHLSADALTTGVRRNVKPE-------MAE 536
Query: 556 LMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLF 615
+ G R++I +E E +N + +KQ+ D + A Y +S +P S T + N
Sbjct: 537 VKGKRLIISAELEEGKRLNTSIVKQLCSTDEIYAEKKYMKPFSFTP-SHTIVLYTNYLPH 595
Query: 616 VRNPDDAWWRRYIVIPFDKPIANRD--ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDV 673
V D+ WRR IVIPF IA R+ ++AQ L K +W ++G + I + +
Sbjct: 596 VGGNDEGIWRRLIVIPFKATIAKRNDIKNYAQYLTEKAGPAVLQWIIEGAQRTIQQNYQL 655
Query: 674 DIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRI 733
P KA D ++++ C++ + ++S L + Y EY + Y R
Sbjct: 656 TTPAAVTKAVRAYHADNDWLGHFLNENCELNPSYEQKSGDLYQKYREYCQGIGEYIR--- 712
Query: 734 STRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDN 781
ST LK GF ++ K+ + R IKGL+LK VDD+
Sbjct: 713 STTDFYTALKNAGF------QRQHKQ--NGRFIKGLRLK-----VDDD 747
>gi|57233571|ref|YP_180824.1| phage/plasmid DNA primase, putative [Dehalococcoides ethenogenes
195]
gi|57224019|gb|AAW39076.1| phage/plasmid DNA primase, putative [Dehalococcoides ethenogenes
195]
Length = 757
Score = 97.8 bits (242), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 102/379 (26%), Positives = 162/379 (42%), Gaps = 34/379 (8%)
Query: 405 TAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQ--KVKPTKELYITKSTG-TPFV 461
TA E+ + I+ LD+ L DL G + + + +ITK T +P
Sbjct: 391 TATLKESRPMLEISPRDLDADCFLLCTPAATYDLRKGMTGAREHSPDDFITKMTSVSPSS 450
Query: 462 EGEPS-QEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNL 520
+GE Q L L+ + ++E++DY G+A +G + I G G +GKST N
Sbjct: 451 KGEQIWQNSLGLI--FCGNQELIDYVQMICGLAAIGKVYVEALIIAYGGGRNGKSTFWNA 508
Query: 521 IKYAFG-NQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIK 579
I G I+A+ + R P + + G R++I +E E +N + +K
Sbjct: 509 ISRVLGLYSGNISADTLTVGCRR-----NIKPEMAEVKGKRLLIAAEIQEGARLNDSTVK 563
Query: 580 QMTGGDCMTARLNYGNTYSESPASFTP---FIVPNKHLF-VRNPDDAWWRRYIVIPFDKP 635
Q+ D + A Y + P SFTP ++ HL V DD WRR +VIPFD
Sbjct: 564 QLCSTDDVFAEKKY-----KDPFSFTPCHTLVLYTNHLPKVSASDDGIWRRLVVIPFDAK 618
Query: 636 IANRD--ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTY 693
I ++ + L W ++G K I+ + +P +A E R D +
Sbjct: 619 IEGSSDIKNYGEYLYQNAGESILAWVIEGAKKVIALDYKIPVPVCVQQAITEYRSQNDWF 678
Query: 694 QAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKR 753
++++ C++ + E S SL ++Y Y Y R ST L+ G+ G I
Sbjct: 679 GHFLEEKCELDASYRESSSSLYRAYRNYCVDTNEYIR---STTDFYSALEAAGY-GRIN- 733
Query: 754 EKIEKEWKSKRIIKGLKLK 772
K+KR GL+LK
Sbjct: 734 ------VKNKRFFAGLRLK 746
>gi|325110202|ref|YP_004271270.1| phage/plasmid primase, P4 family [Planctomyces brasiliensis DSM
5305]
gi|324970470|gb|ADY61248.1| phage/plasmid primase, P4 family [Planctomyces brasiliensis DSM
5305]
Length = 707
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 92/356 (25%), Positives = 157/356 (44%), Gaps = 27/356 (7%)
Query: 394 QNVEENSKAKSTAQSL-EAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYI 452
++ ++++ + Q L +A ++ +T+D L+ +G LDL TG+ + +
Sbjct: 339 KHAQKSASTRGMEQFLKQAAAMVPVTTDDLNRDPWLFNCPNGTLDLRTGELRPHNRADLL 398
Query: 453 TKSTGTPFVEGEPS---QEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGV 509
T T + PS FL+ S + + +V+ + R G AL+G + G
Sbjct: 399 TVICPTAYNPDAPSFTWDGFLE--STFADHGDVIPFLQRLFGAALVGIVRDHILPVFWGS 456
Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEA---SDIMQNRPPEAGKANPSLIRLMGSRIVIISE 566
G +GKSTL+N I G Y + A D Q+R P +A+ L G R V E
Sbjct: 457 GANGKSTLLNAIMAILGGDYALQAVPEMLCDSDQDRHPTE-RAD-----LYGKRFVAAVE 510
Query: 567 TNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRR 626
T + + +K +TGGD + AR Y + + P+ + N V D WRR
Sbjct: 511 TEAGRRLKESFVKALTGGDRIRARHLYQDFFEFDPSHLI-VLCSNHKPKVIGDDYGIWRR 569
Query: 627 YIVIPFDKPIANRDASFAQKLETKYTLEAK---KWFLKGVKAYISKGLDVDIPEVCLKAK 683
++PF DA +L K EA+ W ++G + ++GL+ PE L+A
Sbjct: 570 LRLVPFTATFKGSDAD--PQLPEKLQAEAEGVLAWMVRGCLDWQAQGLNE--PETVLQAT 625
Query: 684 EEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVT 739
E + +D +ID CC + + S ++ Y+ + E+ N + + +RT T
Sbjct: 626 SEYKNESDVIGGFIDACCYTNDRM---QVSFSQFYTAF-EEWCNESGENLPSRTRT 677
>gi|30795066|ref|NP_851516.1| putative DNA primase/helicase [Streptomyces rochei]
gi|30698439|dbj|BAC76552.1| putative DNA primase/helicase [Streptomyces rochei]
Length = 485
Score = 97.8 bits (242), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 107/443 (24%), Positives = 179/443 (40%), Gaps = 39/443 (8%)
Query: 299 PKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNF 358
P GLL +D N +F+ F + + WY D+ Y W T + A
Sbjct: 16 PTGLLPDELTDRGNAKLFARLYSDRFRHV-EGLGWYSWDQ---YRWKRTGGEKGAMWA-- 69
Query: 359 LVSMKEDVFDLSEE-PEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSI 417
D++E+ P + + S R R+ + + K+ Q +A S+
Sbjct: 70 -------AGDMAEQMPRTDPHGTFSNR---ELAAHRRRTQSTAGVKALLQQAQAAPGLSL 119
Query: 418 TSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF 477
D +D L G++DL TG+ KP + T E P + + F
Sbjct: 120 DPDSMDGDIYALCTPGGVVDLRTGELRKPDPLADMHSRATTVGPEDMPLPRWHSFLRDTF 179
Query: 478 ----ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
+ E + + +G ++ G AQ + G G +GKS L+ ++ G+ Y A
Sbjct: 180 GDDAKGRETIAFLHLLLGYSVTGDVGAQILPFLYGSGANGKSVLLEVMMQILGD-YANAA 238
Query: 534 EASDIMQNRPPEAGK---ANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR 590
+M E GK + L L G RIV+ SE ND+ N A++K +TGGD +TAR
Sbjct: 239 PPGFLM-----EKGKFTEHSTELTELHGRRIVVCSELKPNDKFNEARVKLLTGGDTITAR 293
Query: 591 LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDASFAQKLE 648
+ ++ P + +++ N V A+WRR +IPF++ + + + + AQ+L
Sbjct: 294 RMRQDFFTFRP-THKLWLLGNHRPEVGTGGYAFWRRMRIIPFERKVPDELKIDNLAQELV 352
Query: 649 TKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGEN-- 706
W ++G + Y++ + P A E + D +I + C GE
Sbjct: 353 RDEGPGILHWLIQGAQHYLATRDPLHGPASVRLATEAYEKTEDHIGRFIAERCTKGEGGQ 412
Query: 707 ----LWEESHSLAKSYSEYREQE 725
L E L SY + +E
Sbjct: 413 PNPELRVEQKLLYASYGRWCSEE 435
>gi|227498327|ref|ZP_03928477.1| prophage protein [Acidaminococcus sp. D21]
gi|226903789|gb|EEH89707.1| prophage protein [Acidaminococcus sp. D21]
Length = 747
Score = 97.4 bits (241), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 109/389 (28%), Positives = 167/389 (42%), Gaps = 54/389 (13%)
Query: 404 STAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTK--ELYITKSTGT-PF 460
S Q+L+ + I + LD+ L DL G + E YITK T P
Sbjct: 388 SALQALKPMLLIPIQA--LDADEFLLNTPSFTYDLRQGMAGRRNHRPEDYITKCTAVDPG 445
Query: 461 VEGEPS-QEFLD-LVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLM 518
EGE Q+ LD +G +E++DY G+ +G + + G G +GKST
Sbjct: 446 EEGETVWQQALDEFFTG---DQELIDYAQEICGLMAIGKVYVEALVIAYGDGRNGKSTYW 502
Query: 519 NLIKYAFGNQYVINAEASDIMQNRPPEAGKAN--PSLIRLMGSRIVIISETNENDEINAA 576
N I G+ Y A + N K N P + L G R+VI +E E ++ +
Sbjct: 503 NSIARVLGS-YCGGISADALTAN-----CKRNIKPEMAELKGKRMVIAAEMEEGVRLSTS 556
Query: 577 KIKQMTGGDCMTARLNYGNTYSESPASFTP---FIVPNKHL-FVRNPDDAWWRRYIVIPF 632
+KQ+ D + Y ++P +F P ++ HL V D+ WRR IVIPF
Sbjct: 557 VLKQLCSTDEVGGEKKY-----KTPFTFVPTHTLVLYTNHLPRVGASDEGTWRRLIVIPF 611
Query: 633 DKPIANRDASFAQKLETK----YTLEAK-----KWFLKGVKAYISKGLDVDIPEVCLKAK 683
A F E K Y +EA +W ++G + I+ + +P+ A
Sbjct: 612 K-------AQFEGHGEIKNYADYLVEAAGPAILRWIIEGAEKVIASEYHLTMPKCVRDAI 664
Query: 684 EEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLK 743
+E R D + +++DCCD+ + E+S +L +Y Y +Q Y R ST L+
Sbjct: 665 QEYRGQNDWLRHFLEDCCDVDPSCQEKSGALYTAYRLYCQQMNEYTR---STTDFYGALE 721
Query: 744 QKGFIGGIKREKIEKEWKSKRIIKGLKLK 772
+ GF ++ K+ I GLKLK
Sbjct: 722 KAGF--------DRRKRKAGYFIYGLKLK 742
>gi|273810442|ref|YP_003344913.1| P4 family phage/plasmid primase [Xylella phage Xfas53]
gi|257097817|gb|ACV41123.1| P4 family phage/plasmid primase [Xylella phage Xfas53]
Length = 845
Score = 97.4 bits (241), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 84/310 (27%), Positives = 136/310 (43%), Gaps = 27/310 (8%)
Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLD--- 471
+ + LD++ L +G +DL TG E YIT+ F + EF+
Sbjct: 471 LRVPQEQLDTNPWLLNCANGTVDLRTGTLKAHRPEDYITRVVPINFDPKATAPEFITTLA 530
Query: 472 -LVSGYFESEE-VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529
+ Y ES + + + R G G + Q+F + G G +GKSTL++LI G
Sbjct: 531 RITCEYGESSKPLCAFLQRWFGYCATGEVREQKFAVLYGDGNNGKSTLLDLITGILGRYS 590
Query: 530 VINAEASDIMQNRPPEAGKANPSLIR-LMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588
+ A +N P +P+ I L G R+V E+ E + + +KQ TGGD +
Sbjct: 591 GVAAPGLLTGKNGP-----QHPNAIADLAGRRMVTTHESGEGEVLREDFVKQATGGDTLK 645
Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF--------DKPIAN-- 638
AR YG + P + +K + ++ D WRR ++IPF + I N
Sbjct: 646 ARYLYGEFFEFKPTHKLQLLTNHKPV-IKGQDSGIWRRIMLIPFKAKFDAAEGEEIGNGK 704
Query: 639 --RDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAW 696
RD A+KL T+ W + G + GL P++ L A E+ ++ D +
Sbjct: 705 YLRDMRIAEKLATERE-GVLAWIVAGAVEWYKNGLRP--PDIVLAASEDYKEEQDRVGQF 761
Query: 697 IDDCCDIGEN 706
ID+ C++G +
Sbjct: 762 IDEECELGAD 771
>gi|46578606|ref|YP_009414.1| P4 family phage/plasmid primase [Desulfovibrio vulgaris str.
Hildenborough]
gi|46448017|gb|AAS94673.1| phage-plasmid primase, P4 family [Desulfovibrio vulgaris str.
Hildenborough]
Length = 561
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 94/427 (22%), Positives = 179/427 (41%), Gaps = 33/427 (7%)
Query: 297 LIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSL-TLDKITASI 355
I K L A+R DA +F+ +G F+Y K W + + + W ++ A++
Sbjct: 56 FILKCLKANRVGDAM---LFNALHRGKFVYV---KRWGRFIRWAGHHWEEDIMETSQAAV 109
Query: 356 MNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENS--KAKSTAQSL---- 409
+ V LS++ +D + K+ R + ++ S +A S + L
Sbjct: 110 EAVCEAYLRAVSSLSKQADDAVGDEKA----LLERKREELLKRVSFLRAPSGREQLLRCT 165
Query: 410 -EAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGT--PFVEGEPS 466
+IT D LD L ++G++DL TG+ + Y+ + P ++ P
Sbjct: 166 HTIADPLAITGDELDQQPFLLACRNGVIDLRTGEFRPGHPDDYVLNACPIEWPGIDA-PC 224
Query: 467 QEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQR-FIHIRGVGGSGKSTLMNLIKYAF 525
+F + E+E ++ + R G ++G F+ G +GK TL+ ++
Sbjct: 225 PQFERFMYSCHENEAIVSFLQRVFGYGIMGARDDHYWFVFYGARGRNGKDTLLKILTAIL 284
Query: 526 GNQYVINAEASDIMQNRPPEAGKA-NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGG 584
G+ + + ++ + P + +P ++ L G R+ +E + + +KIK +TGG
Sbjct: 285 GDDLASTIDTALLLDTKQPRSSAGPSPDVLALRGKRMAFATEAEDGQKFAMSKIKWLTGG 344
Query: 585 DCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF-----DKPIANR 639
+ AR Y+ + F++ N+ + DDA+W R + +P+ D P
Sbjct: 345 SNLMARGLQDKLYTTWKQTHLLFLLTNEIPRAKADDDAFWTRTLAVPWKLRFVDHPTTPD 404
Query: 640 DASFAQKLETKYTLEAK---KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAW 696
+ ++E K E W ++G Y GL+ PE L E R+ D +
Sbjct: 405 ERPRDPQMEHKLMKELPGILAWLVRGCLEYQRVGLNP--PEEVLACTRERRRAFDDVGRF 462
Query: 697 IDDCCDI 703
+ +CC+I
Sbjct: 463 LTECCEI 469
>gi|256847830|ref|ZP_05553275.1| phage DNA polymerase [Lactobacillus coleohominis 101-4-CHN]
gi|256715519|gb|EEU30495.1| phage DNA polymerase [Lactobacillus coleohominis 101-4-CHN]
Length = 751
Score = 97.1 bits (240), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 95/361 (26%), Positives = 154/361 (42%), Gaps = 32/361 (8%)
Query: 422 LDSSSRFLGEQDGILDLETG---QKVKPTKELYITKSTGTPFVEGEPSQEFLD--LVSGY 476
D+ L +G +L+ G Q+ EL ITKST V G L + +
Sbjct: 405 FDADPFLLNTPNGPFNLKKGMHGQQEIQADEL-ITKSTSC--VPGNQGASLWQEALTTFF 461
Query: 477 FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN---QYVINA 533
+ +++Y VG+ +G + I G G +GKST N I G +A
Sbjct: 462 CGDQALINYVQEIVGLVAIGQVYLEALIIAYGSGRNGKSTFWNTIANVLGTYTGHLSADA 521
Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593
+ + +N PE + + G R++I +E E +N + +KQ+ D + A Y
Sbjct: 522 LTTGVRRNVKPE-------MAEVKGKRLIISAELEEGKRLNTSIVKQLCSTDEIYAEKKY 574
Query: 594 GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD--ASFAQKLETKY 651
+S +P S T + N V D+ WRR IVIPF IA R+ ++AQ L +
Sbjct: 575 MKPFSFTP-SHTIVLYTNYLPHVGGNDEGIWRRLIVIPFKATIAKRNDIKNYAQYLTEQA 633
Query: 652 TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEES 711
+W ++G + I + + P KA D ++++ C++ + ++S
Sbjct: 634 GPAVLQWIIEGAQRIIQQNYQLTTPVAVTKAVRSYHANNDWLGHFLNENCELDPSYEQKS 693
Query: 712 HSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771
L + Y EY + Y R ST LK GF ++ K+ + R IKGL+L
Sbjct: 694 GDLYQKYREYCQSIGEYIR---STSDFYTALKNAGF------QRQHKQ--NGRFIKGLRL 742
Query: 772 K 772
K
Sbjct: 743 K 743
>gi|327409707|ref|YP_004347127.1| putative primase [Lausannevirus]
gi|326784881|gb|AEA07015.1| putative primase [Lausannevirus]
Length = 902
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/216 (29%), Positives = 102/216 (47%), Gaps = 6/216 (2%)
Query: 422 LDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ----EFLDLVSGYF 477
LD + +G +DG++DL+ G + + YI+ STG + E + E + + F
Sbjct: 519 LDENRDIIGMEDGVVDLKLGIFRDGSPDDYISMSTGISYREFSETDRAVVECREFLRKLF 578
Query: 478 ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
+ ++ R V + GGN+ +R G G +GK+ NL++Y FG QY+I
Sbjct: 579 PNPKIRKCAIRMVSSCMQGGNRNKRIYVCTGKGHNGKTVFFNLLEYIFG-QYLIKFPREM 637
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
+ R A A P L R G+R +I E ++ +++N +K+++G D R Y
Sbjct: 638 CLVGRTASASSARPELARAPGARFAVIQEVHKGEKLNPGILKELSGNDSFFVRSLYEKGR 697
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFD 633
P FT F++ NK V D A W R I F+
Sbjct: 698 DVKP-QFTIFMMCNKPPSVPGSDQATWNRLRAILFE 732
>gi|207725439|ref|YP_002255835.1| bacteriophage-related protein [Ralstonia solanacearum MolK2]
gi|206590675|emb|CAQ37637.1| bacteriophage-related protein [Ralstonia solanacearum MolK2]
Length = 769
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 85/293 (29%), Positives = 131/293 (44%), Gaps = 16/293 (5%)
Query: 416 SITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITK-STGTPFV---EGEPS-QEFL 470
+ T+D D+ L G++DL TG +E +TK +T TP EG PS F+
Sbjct: 412 AATADEWDADVWALNTPGGVVDLRTGNLRAHRREDRMTKVTTATPRGRNGEGCPSWLAFI 471
Query: 471 DLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530
++G + ++ Y R G AL G + + G G +GKS +N + G+ Y
Sbjct: 472 GDITG--GNTDLAAYLQRMAGYALTGSTQEHALFFLYGTGANGKSVFVNTLATILGD-YA 528
Query: 531 INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR 590
+NA M+ R A + + L G+R V ET + +K+K +TGGD ++AR
Sbjct: 529 VNAAMDTFMETR---ADRHPTDMAGLRGARFVAAIETEQGRRWAESKVKNLTGGDKISAR 585
Query: 591 LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF--DKPIANRDASFAQKLE 648
+ + P F F+ N +RN D+A RR +IPF P RD QKL
Sbjct: 586 FMRQDFFEFFP-QFKLFVAGNHKPAIRNIDEAMKRRLHLIPFTITVPPERRDKHLQQKLL 644
Query: 649 TKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCC 701
+ W ++G + G + P+ L A EE + D W+D+ C
Sbjct: 645 AERD-GILAWAVQGCLDWQRLG-RLQPPQQVLDATEEYFEAEDALGRWLDERC 695
>gi|107022006|ref|YP_620333.1| Phage-plasmid primase P4-like [Burkholderia cenocepacia AU 1054]
gi|116688950|ref|YP_834573.1| P4 family phage/plasmid primase [Burkholderia cenocepacia HI2424]
gi|105892195|gb|ABF75360.1| Phage-plasmid primase P4-like protein [Burkholderia cenocepacia AU
1054]
gi|116647039|gb|ABK07680.1| phage/plasmid primase, P4 family [Burkholderia cenocepacia HI2424]
Length = 746
Score = 96.7 bits (239), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 96/393 (24%), Positives = 173/393 (44%), Gaps = 43/393 (10%)
Query: 396 VEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKS 455
E N+ K + + ++++ LD L ++G++DL TG + +L+IT +
Sbjct: 333 TESNTGLKYAVELFRSEPGIAVSAGDLDQGEWMLPVRNGLIDLRTGSFMPMDPKLHITYT 392
Query: 456 TGTPFVEGEPSQE-------FLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRG 508
V+ +P L++++ + E+++Y R +G L G
Sbjct: 393 AA---VDYDPDATCPLWEAFLLEIMN---RNVELVEYVRRAIGYTLTTLTSEHALFFAFG 446
Query: 509 VGGSGKSTLMNLIKYAFGNQYVINAEAS-DIMQNR----PPEAGKANPSLIRLMGSRIVI 563
G +GKST +N+++ FG+ + A+A+ D++ ++ + A+ + RL G R+V
Sbjct: 447 SGANGKSTFLNVLRALFGD---LGAQANGDMLLDKNGGAAMSSNAASSEVARLAGKRLVA 503
Query: 564 ISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAW 623
+SE E + +K TGG+ +TARL YGN + P F ++ N ++ D
Sbjct: 504 MSEVEEGRHFSEKTVKWYTGGEDITARLLYGNAFEFKP-RFKLWLAGNYKPTIKGNDHGI 562
Query: 624 WRRYIVIPFDK--PIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLK 681
WRR +IPF P RD +KL + W L G K + G ++ P+
Sbjct: 563 WRRMKLIPFTVTIPPEKRDPDLERKLRDELP-GILNWALVGCKQWRENGNKLNEPKAITN 621
Query: 682 AKEEERQGTDTYQAWIDDCC---DIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738
E R D ++W+ + GE + +++ K++SE + +Y KR
Sbjct: 622 EVSEYRGEMDVVESWLSEFTRNDPDGEIHFGDTYKFFKAWSE-SQYNFSYSGKRFG---- 676
Query: 739 TLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771
+ L KG+ + K R+ KGL+L
Sbjct: 677 -MILADKGY---------KPASKPHRVYKGLRL 699
>gi|46581285|ref|YP_012093.1| P4 family phage/plasmid primase [Desulfovibrio vulgaris str.
Hildenborough]
gi|46450706|gb|AAS97353.1| phage-plasmid primase, P4 family [Desulfovibrio vulgaris str.
Hildenborough]
gi|311234949|gb|ADP87803.1| phage/plasmid primase, P4 family [Desulfovibrio vulgaris RCH1]
Length = 561
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 93/426 (21%), Positives = 177/426 (41%), Gaps = 31/426 (7%)
Query: 297 LIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSL-TLDKITASI 355
I K L A+R DA +F+ +G F+Y K W + + + W ++ A++
Sbjct: 56 FILKCLKANRVGDAM---LFNALNRGKFVYV---KRWGRFIRWAGHHWEEDIMETSQAAV 109
Query: 356 MNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENS--KAKSTAQSL---- 409
+ V LS++ +D + K+ R + ++ S +A S + L
Sbjct: 110 EAVCEAYLRAVSSLSKQADDAVGDEKA----LLERKREELLKRVSFLRAPSGREQLLRCT 165
Query: 410 -EAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVE-GEPSQ 467
+IT D LD L ++G++DL TG+ + Y+ + + P
Sbjct: 166 HTIADPLAITGDELDQQPFLLACRNGVIDLRTGEFRPGHPDDYVLNACPIEWAGIDAPCP 225
Query: 468 EFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQR-FIHIRGVGGSGKSTLMNLIKYAFG 526
+F + E+E ++ + R G ++G F+ G +GK TL+ ++ G
Sbjct: 226 QFERFMYSCHENEAIVSFLQRVFGYGIMGARDDHYWFVFYGARGRNGKDTLLKILTAILG 285
Query: 527 NQYVINAEASDIMQNRPPEAGKA-NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGD 585
+ + + ++ + P + +P ++ L G R+ +E + + +KIK +TGG
Sbjct: 286 DDLASTIDTALLLDTKQPRSSAGPSPDVLALRGKRMAFATEAEDGQKFAMSKIKWLTGGS 345
Query: 586 CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF-----DKPIANRD 640
+ AR Y+ + F++ N+ + DDA+W R + +P+ D P +
Sbjct: 346 NLMARGLQDKLYTTWKQTHLLFLLTNEIPRAKADDDAFWTRTLAVPWKLRFVDHPTTPDE 405
Query: 641 ASFAQKLETKYTLEAK---KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWI 697
++E K E W ++G Y GL+ PE L E R+ D ++
Sbjct: 406 RPRDPQMEHKLMKELPGILAWLVRGCLEYQRVGLNP--PEEVLACTRERRRAFDDVGRFL 463
Query: 698 DDCCDI 703
+CC+I
Sbjct: 464 TECCEI 469
>gi|311977583|ref|YP_003986703.1| putative helicase [Acanthamoeba polyphaga mimivirus]
gi|160369783|sp|Q5UQ22|YL207_MIMIV RecName: Full=Putative helicase L207/L206
gi|308204253|gb|ADO18054.1| putative helicase [Acanthamoeba polyphaga mimivirus]
Length = 960
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 84/302 (27%), Positives = 134/302 (44%), Gaps = 31/302 (10%)
Query: 422 LDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE--- 478
LD ++ +G ++G+ DLE G + I+ T ++E + E ++G+ +
Sbjct: 583 LDENNYLIGFENGVFDLEAGIFRDGCPDDCISLCTNYKYIEIDEDDETFKNINGFLKKIQ 642
Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
+ + +Y + L G N + F + G G +GKS LM L+KY G+ Y + D
Sbjct: 643 PDKSMREYILTLLSTCLSGTNSEESFYVLTGSGANGKSKLMELLKYTLGDLY----KPMD 698
Query: 538 I--MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595
I + + + A+P L G R E +DEIN +K TGGD +TAR Y
Sbjct: 699 IRLLTEKRSSSSSASPELADKKGIRACPFDEPKASDEINTGFMKIFTGGDTITARALYKE 758
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF-DKPIANRDASFAQKLE------ 648
P F PF++ N+ +++ DD WRR VIPF K I + +A+ K E
Sbjct: 759 PIYFKP-QFKPFLLCNELPTIKSDDDGTWRRLKVIPFLSKFIKHSEATKKMKKEGLPKNH 817
Query: 649 ----TKYTLEAKKW-------FLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWI 697
T + + W LK + Y GL P++ + E R+ D +Q +I
Sbjct: 818 FWADTSLSEKLPDWKQGFMCLLLKYFRKYRKHGLIH--PKLVTQHTVEYRKKCDVFQDFI 875
Query: 698 DD 699
D
Sbjct: 876 GD 877
>gi|297564960|ref|YP_003683932.1| phage/plasmid primase, P4 family [Meiothermus silvanus DSM 9946]
gi|296849409|gb|ADH62424.1| phage/plasmid primase, P4 family [Meiothermus silvanus DSM 9946]
Length = 882
Score = 96.3 bits (238), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 85/336 (25%), Positives = 152/336 (45%), Gaps = 30/336 (8%)
Query: 422 LDSSSRFLGEQDGILDLET---GQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE 478
LD+ + L ++G+L+LE+ G K ++ P+ E + FL+ V
Sbjct: 541 LDARTDELPLENGVLNLESLTLGPHRKLAWHTHVLPHPYDPYAECPRWERFLEEV---LP 597
Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538
E + Y + VG +LLG N+ G G +GKS + ++ + FG Y A+ +
Sbjct: 598 DENLRRYVQKAVGYSLLGDNREHVIFLCYGSGANGKSVFLEVLSWLFGP-YAHRADPELL 656
Query: 539 MQNRPPEAGKANPSLIRLM-GSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
+Q +P+ I M G R+V++ E + +A +K M+G + +TAR
Sbjct: 657 LQRN----SDRHPTEIAAMRGKRLVVMQEVDPEGIWRSALLKSMSGDNTLTAR-----KI 707
Query: 598 SESPASFT----PFIVPNKHLFVRNPDDAWWRRYIVIPFDK--PIANRDASFAQKLETKY 651
E+P +FT +I N R+ +A+WRR +IPF+ P RD + KL +
Sbjct: 708 RENPITFTVTWKVWIAANHLPRSRDHSEAFWRRIKLIPFNVTIPPERRDRTLPWKLREE- 766
Query: 652 TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEES 711
++ W ++G++ Y +GL PE +A R+ D ++ + C +G
Sbjct: 767 SVGLLAWAVQGLRMYYQEGLQE--PEAIAQANRAYREREDQVGRFLKERCQLGGG----R 820
Query: 712 HSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGF 747
+ + Y+ Y+E L + +S + L+Q+G
Sbjct: 821 TASSALYAAYQEWALEEGERMLSQKAFVAELEQRGL 856
>gi|134297351|ref|YP_001121086.1| hypothetical protein Bcep1808_3261 [Burkholderia vietnamiensis G4]
gi|134140508|gb|ABO56251.1| phage/plasmid primase, P4 family [Burkholderia vietnamiensis G4]
Length = 775
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 94/363 (25%), Positives = 157/363 (43%), Gaps = 26/363 (7%)
Query: 416 SITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITK-STGTPFVEGEPSQEFLDLVS 474
+ T+D D+ L G+++L+ G + +TK +T TP + ++F+ V+
Sbjct: 422 AATADEWDADPWLLNTPGGVVNLKNGVLRSHDRLDRLTKITTATPAGDCPTWRQFIHEVT 481
Query: 475 GYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
G + + Y R G AL G + + G G +GKS +N + G+ Y NA
Sbjct: 482 G--GDQALQAYLARMAGYALTGSTREHALFFLYGTGANGKSVFVNTLATILGD-YATNAP 538
Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
M+ R + + L G+R V ET + +K+K +TGGD ++AR
Sbjct: 539 MDTFMETR---TDRHPTDMASLRGARFVAAIETEQGRRWAESKVKSLTGGDKISARFMRQ 595
Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF--DKPIANRDASFAQKL--ETK 650
+ + P F + N +RN D+A RR +IPF P RD QKL E
Sbjct: 596 DFFEFMP-QFKLIVAGNHKPAIRNIDEAMKRRLHLIPFTITVPPERRDKHLQQKLLAERD 654
Query: 651 YTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEE 710
L W ++G + +G +D P+ L A +E + D ++D+ C E
Sbjct: 655 GIL---AWAVQGCLEWQRQG-RLDPPQQVLDATDEYFEEEDAIGEFLDEDCQQSPVARE- 709
Query: 711 SHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLK 770
+++ Y +RE+ ++R +T L +GF R ++ K+ + GL
Sbjct: 710 --AISAIYQRWRERAERRGEYVGTSRWLTQQLINRGF----ARTRLHGGAKA---LSGLS 760
Query: 771 LKP 773
LKP
Sbjct: 761 LKP 763
>gi|269974625|gb|ACZ55146.1| putative DNA primase/helicase [Streptomyces sp. 36R-2-1B]
Length = 511
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 97/380 (25%), Positives = 161/380 (42%), Gaps = 33/380 (8%)
Query: 299 PKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNF 358
P GLL SD N +F + F + + W+ D Y W K T
Sbjct: 49 PAGLLPPHLSDRGNARLFVQLYRDQFRHV-EGLGWFTWDG---YRW-----KRTGGEKAV 99
Query: 359 LVSMKEDVFDLSEEPEDNNKNSKSPRFWFN----TDYRRQNVEENSKAKSTAQSLEAGSI 414
L + E DLSE PR F+ T ++R+ + + Q+ +A
Sbjct: 100 LWAAGEMAEDLSE---------SDPRRVFSDRELTAHKRKTLSTTGQKALLTQA-KASPD 149
Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQ--KVKPTKELYITKSTGTP-FVEGEPSQEFL- 470
S+ D LD L G++DL TGQ K P+++ + ++ P +E FL
Sbjct: 150 LSVDPDTLDGDPYALCTPSGVVDLHTGQLRKPDPSRDFHSRATSVAPQHMETPRWHRFLA 209
Query: 471 DLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530
D E E++D+ +G ++ G AQ + G G +GKS L++ + G+ Y
Sbjct: 210 DTFGNDAEGREMIDFLHLLLGYSITGDVGAQVLPFLHGEGKNGKSVLLDTMIQILGD-YA 268
Query: 531 INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR 590
A +M + + L L G R+V+ SE ND+ + A+++ +TGGD + AR
Sbjct: 269 DAAPPGFLMDRG--AFSEHSTELTELHGRRLVVCSELKPNDKFDEARVRLLTGGDKIKAR 326
Query: 591 LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK--PIANRDASFAQKLE 648
+ +S P +++ N V A+WRR ++PF + P R + A +L
Sbjct: 327 RMRQDYFSFHPTHHL-WLLGNHRPEVSTGGFAFWRRIRLVPFTRTVPAERRIDNLAFELV 385
Query: 649 TKYTLEAKKWFLKGVKAYIS 668
+W ++G + Y+S
Sbjct: 386 RDEGPGILQWLIEGARHYLS 405
>gi|163854284|ref|YP_001642327.1| P4 family phage/plasmid primase [Methylobacterium extorquens PA1]
gi|163665889|gb|ABY33256.1| phage/plasmid primase, P4 family [Methylobacterium extorquens PA1]
Length = 697
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 99/432 (22%), Positives = 181/432 (41%), Gaps = 51/432 (11%)
Query: 303 LASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSM 362
L + SD + F + + ++ D + +Y++ N+VY +L + ++M+++ S
Sbjct: 263 LPTVTSDLQSGQDFCDHIGDNLIFCDDEERFYQR-LNDVY-EPASLASVKGTVMDYVKSF 320
Query: 363 KEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDL- 421
DV N EE K KS +I ++
Sbjct: 321 DADV---------------------------TNYEEAKKLKSAQSMSRINAIVDVSRSSL 353
Query: 422 ------LDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSG 475
++ +G ++G+LDL G+ VKP+ +T+ GT + F++ +
Sbjct: 354 RISSSQFNTDPFLVGCRNGVLDLRAGKLVKPS--CIVTRRLGTNYDSQARCPSFVEFLQQ 411
Query: 476 YFESE-EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
F+++ E +D+ R VG L G Q G G +GKST + +I+ G+ Y +
Sbjct: 412 VFDADREKIDFIRRAVGYTLTGSTAGQCIFVAIGSGANGKSTFLKIIQELMGD-YGTSIP 470
Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
++ +M ++ + L G R V SE ++ AK+K MTGGD ++ R YG
Sbjct: 471 SNSLMASK--FGNDKTDDIASLNGRRFVSASEGEIGQKLAVAKVKLMTGGDIISCRPLYG 528
Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLE 654
++ P F + N ++ D+A WRR +I F P++ ++ L + LE
Sbjct: 529 QYFNMKP-EFKIWFGTNDLPVIQGGDEAIWRRIHLIDF--PVSFKEGQRDGGLFDRLKLE 585
Query: 655 AK---KWFLKGVKAY--ISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWE 709
W L+GV+ + G ++ P R +DT +++D CD E
Sbjct: 586 LPGILSWALQGVQELGEMRNGF-LNPPASVRNETTRYRSDSDTVASFVDVACDKVEGAIV 644
Query: 710 ESHSLAKSYSEY 721
+ L ++Y +
Sbjct: 645 MMNVLHEAYVRW 656
>gi|284504180|ref|YP_003406895.1| D5 family helicase-primase [Marseillevirus]
gi|282935618|gb|ADB03933.1| D5 family helicase-primase [Marseillevirus]
Length = 903
Score = 95.9 bits (237), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 83/302 (27%), Positives = 128/302 (42%), Gaps = 27/302 (8%)
Query: 422 LDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFV----EGEPSQEFLDLVSGYF 477
LD + LG +DG+ DL+ G + + YI+ STG + E E + + F
Sbjct: 519 LDENRDLLGMEDGVCDLKLGIFRDGSPDDYISMSTGISYKALSEEDRSVIECREFLKKLF 578
Query: 478 ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
+ + R V + GGN+ +R G G +GKS +L++Y FG QY+I
Sbjct: 579 PNPRIRKCALRMVSSCMQGGNRNKRIYICTGKGNNGKSVFFSLLEYIFG-QYLIKFPREM 637
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
+ R A P L R G+R +I E ++N++ N +K+++G D R +
Sbjct: 638 CLAGRAGNPSSARPELARAPGTRYGVIQEVHKNEKFNPGILKELSGNDSFFVRNLFEKGR 697
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK-------------PIANRDASF- 643
P FT F++ NK V D A W R +IPF+ P R+A
Sbjct: 698 DIKPM-FTIFMMANKPPGVPGSDQATWNRIRLIPFEATFLSEQDENWIEDPELRREAKMF 756
Query: 644 --AQKLETKY--TLEAKKWF-LKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID 698
+ E K A W ++ + Y +GL PE A + R DT + +I
Sbjct: 757 KADEHFEEKIPGLAHALLWLCVEDFRKYKEEGLCE--PEEVEAATAKMRARNDTIRKYIR 814
Query: 699 DC 700
DC
Sbjct: 815 DC 816
>gi|258543726|ref|YP_003189159.1| hypothetical protein APA01_26880 [Acetobacter pasteurianus IFO
3283-01]
gi|256634804|dbj|BAI00780.1| phage/plasmid primase P4 [Acetobacter pasteurianus IFO 3283-01]
gi|256637860|dbj|BAI03829.1| phage/plasmid primase P4 [Acetobacter pasteurianus IFO 3283-03]
gi|256640914|dbj|BAI06876.1| phage/plasmid primase P4 [Acetobacter pasteurianus IFO 3283-07]
gi|256643969|dbj|BAI09924.1| phage/plasmid primase P4 [Acetobacter pasteurianus IFO 3283-22]
gi|256647024|dbj|BAI12972.1| phage/plasmid primase P4 [Acetobacter pasteurianus IFO 3283-26]
gi|256650077|dbj|BAI16018.1| phage/plasmid primase P4 [Acetobacter pasteurianus IFO 3283-32]
gi|256653067|dbj|BAI19001.1| phage/plasmid primase P4 [Acetobacter pasteurianus IFO 3283-01-42C]
gi|256656121|dbj|BAI22048.1| phage/plasmid primase P4 [Acetobacter pasteurianus IFO 3283-12]
Length = 466
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 87/365 (23%), Positives = 154/365 (42%), Gaps = 31/365 (8%)
Query: 416 SITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGT-----PFVEGEPSQEFL 470
++ + D L G +DL TG IT+ P+ + E FL
Sbjct: 115 AVVPEDWDKDPYLLATPGGTVDLRTGALRPACPADMITRVAAVAPSDMPYPQWE---RFL 171
Query: 471 DLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530
+ + E++ + R G L G + + G GG+GKS +N + G+
Sbjct: 172 NEATN--GDTELIVFLKRWCGYCLTGDTREHALLFGYGPGGNGKSVFLNTLSRIMGDYAT 229
Query: 531 INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR 590
+ A + + + + L L G+R+V SET E ++IKQMTGGD +TAR
Sbjct: 230 VAAMDTFTASH----GDRHSTDLAMLRGARLVTASETEEGRAWAESRIKQMTGGDPITAR 285
Query: 591 LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETK 650
+ ++ P F IV N ++N D+A RR+ ++PF N D KL+ +
Sbjct: 286 FMRQDNFTFQP-QFKLTIVGNHKPVLKNVDEAARRRFNIVPFIHKPKNPDKDLESKLQGE 344
Query: 651 YTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEE 710
+ W ++G + +G+ P V +A E + DT+ W+ + C + +L +
Sbjct: 345 WP-GIMYWMIQGCLEWQREGMPR--PAVVKEATAEYFEAQDTFGQWLAERCILDPSLETK 401
Query: 711 SHSLAKSYSEY--REQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKG 768
+ L K + E+ E D KR+ +G + + + + K + ++G
Sbjct: 402 PNMLLKDFQEWCRNNGEPESDNKRM-----------RGMLEKTEGVRYHRHKKLGQSVRG 450
Query: 769 LKLKP 773
+ L+P
Sbjct: 451 IGLRP 455
>gi|183600772|ref|ZP_02962265.1| hypothetical protein PROSTU_04371 [Providencia stuartii ATCC 25827]
gi|188019677|gb|EDU57717.1| hypothetical protein PROSTU_04371 [Providencia stuartii ATCC 25827]
Length = 209
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 100/196 (51%), Gaps = 10/196 (5%)
Query: 509 VGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN 568
G +GKST + +I+ G+ Y + +M N+ +G N SL +L+G R+V+ +E
Sbjct: 2 AGSNGKSTFIQIIQSLMGS-YATQINSDVLMMNK--NSGGPNASLAKLLGKRLVVANELP 58
Query: 569 ENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYI 628
EN ++ IK MTGGD + AR YG E + F+ I+ N + + WRR
Sbjct: 59 ENGRLDDTLIKSMTGGDIIVARQVYGKHELEFYSQFSLVIIGNHKPAIYDMSHGMWRRMC 118
Query: 629 VIPFDKPIANRDAS-FAQKLETKYTLEAK---KWFLKGVKAYISKGLDVDIPEVCLKAKE 684
+IPF AN A+ +L K + E + W L GV+A+ ++GL +P + A +
Sbjct: 119 LIPF---AANFTAAQIDPELPVKLSREMQGILNWALAGVQAWHTEGLKRSLPAAVIAAND 175
Query: 685 EERQGTDTYQAWIDDC 700
E RQ +D +++ C
Sbjct: 176 EYRQESDLIGEFLEGC 191
>gi|86604320|gb|ABD13938.1| predicted ATPase [Lactobacillus reuteri]
Length = 333
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 92/339 (27%), Positives = 147/339 (43%), Gaps = 29/339 (8%)
Query: 441 GQKVKPTKELYITKSTGTPFVEGEPSQEFLD--LVSGYFESEEVMDYFTRCVGMALLGGN 498
GQ+ EL ITKST V G L + + + +++Y VG+ +G
Sbjct: 9 GQQEIQADEL-ITKSTSC--VPGNQGASLWQEALTTFFCGDQALINYVQEIVGLVAIGQV 65
Query: 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFG---NQYVINAEASDIMQNRPPEAGKANPSLIR 555
+ I G G +GKST N I G +A + + +N PE +
Sbjct: 66 YLEALIIAYGSGRNGKSTFWNTIANVLGTYTGHLSADALTTGVRRNVKPE-------MAE 118
Query: 556 LMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLF 615
+ G R++I +E E +N + +KQ+ D + A Y +S +P S T + N
Sbjct: 119 VKGKRLIISAELEEGKRLNTSIVKQLCSTDEIYAEKKYMKPFSFTP-SHTIVLYTNYLPH 177
Query: 616 VRNPDDAWWRRYIVIPFDKPIANRD--ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDV 673
V D+ WRR IVIPF IA R+ ++AQ+L K +W ++G + I + +
Sbjct: 178 VGGNDEGIWRRLIVIPFKAKIAKRNDIKNYAQRLTEKAGPAVLQWIIEGAQRTIQQNYRL 237
Query: 674 DIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRI 733
P KA D ++++ C++ + ++S L + Y EY + Y R
Sbjct: 238 TTPAAVEKAVNAYHADNDWLGHFLNENCELDPSYEQKSGDLYQKYREYCQGIGEYIR--- 294
Query: 734 STRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLK 772
ST LK GF ++ K+ + R IKGL+LK
Sbjct: 295 STTDFYTALKNAGF------QRQHKQ--NGRFIKGLRLK 325
>gi|283853499|ref|ZP_06370741.1| phage/plasmid primase, P4 family [Desulfovibrio sp. FW1012B]
gi|283571124|gb|EFC19142.1| phage/plasmid primase, P4 family [Desulfovibrio sp. FW1012B]
Length = 830
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 87/363 (23%), Positives = 157/363 (43%), Gaps = 27/363 (7%)
Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLD-LV 473
+ ++ D+ L +G +DL+ +E +TK G + +L LV
Sbjct: 470 LAAVPEMFDADPWLLNLPNGTMDLKQQTFRSHAREDMLTKVAGVAYDPTSTCPLWLAFLV 529
Query: 474 SGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
+ ++ ++ + R G L+G Q I + G G +GKS + ++++ G +Y + A
Sbjct: 530 TIMAGNQALIGFLQRFAGYTLVGEVSEQSLILLYGTGANGKSVFLEILRFVLG-EYAMQA 588
Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593
+ + + + RL+G+R V E+ + A IKQ+TGG+ + AR +
Sbjct: 589 DFTTFTATK---GQNVRNDIARLVGARFVTAVESEYGTPLAEAVIKQVTGGEPIVARFLF 645
Query: 594 GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK--PIANRDASFAQKLETKY 651
+ P FT ++ N ++ D WRR ++PF P +D+ KL+ +
Sbjct: 646 KEFFQFYP-QFTLWLASNHKPIIKGGDHGIWRRIKLVPFAVTIPPEQQDSDLPSKLKAEA 704
Query: 652 TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEES 711
W L+G + + +GL+ P + A E R D ++D+ C +G ++
Sbjct: 705 P-GILNWMLEGSREWQRQGLNP--PAEVMAAVSEYRGEMDLLAEFLDEKCVLGLGEKVKA 761
Query: 712 HSLAKSYSEYREQELNY--DRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGL 769
L K+Y E+ E E + +KR + L Q+GF ++ KI I GL
Sbjct: 762 KDLYKAYREFCEAEGEFVLGKKRFADL-----LLQRGF----RKAKI-----GDMIWSGL 807
Query: 770 KLK 772
LK
Sbjct: 808 GLK 810
>gi|55416829|gb|AAV50479.1| helicase III/ VV D5-type ATPase (C-term) [Acanthamoeba polyphaga
mimivirus]
Length = 391
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 84/302 (27%), Positives = 134/302 (44%), Gaps = 31/302 (10%)
Query: 422 LDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE--- 478
LD ++ +G ++G+ DLE G + I+ T ++E + E ++G+ +
Sbjct: 14 LDENNYLIGFENGVFDLEAGIFRDGCPDDCISLCTNYKYIEIDEDDETFKNINGFLKKIQ 73
Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
+ + +Y + L G N + F + G G +GKS LM L+KY G+ Y + D
Sbjct: 74 PDKSMREYILTLLSTCLSGTNSEESFYVLTGSGANGKSKLMELLKYTLGDLY----KPMD 129
Query: 538 I--MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595
I + + + A+P L G R E +DEIN +K TGGD +TAR Y
Sbjct: 130 IRLLTEKRSSSSSASPELADKKGIRACPFDEPKASDEINTGFMKIFTGGDTITARALYKE 189
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF-DKPIANRDASFAQKLE------ 648
P F PF++ N+ +++ DD WRR VIPF K I + +A+ K E
Sbjct: 190 PIYFKP-QFKPFLLCNELPTIKSDDDGTWRRLKVIPFLSKFIKHSEATKKMKKEGLPKNH 248
Query: 649 ----TKYTLEAKKW-------FLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWI 697
T + + W LK + Y GL P++ + E R+ D +Q +I
Sbjct: 249 FWADTSLSEKLPDWKQGFMCLLLKYFRKYRKHGLIH--PKLVTQHTVEYRKKCDVFQDFI 306
Query: 698 DD 699
D
Sbjct: 307 GD 308
>gi|53803176|ref|YP_115052.1| hypothetical protein MCA2648 [Methylococcus capsulatus str. Bath]
gi|53756937|gb|AAU91228.1| prophage LambdaMc01, DNA primase, P4 family [Methylococcus
capsulatus str. Bath]
Length = 755
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 101/368 (27%), Positives = 159/368 (43%), Gaps = 41/368 (11%)
Query: 418 TSDLLDSSSRFLGEQDGILDLETGQKVKP--TKELYITKSTGTPFVEGEPSQEFLDLVSG 475
TS+ D+ L GI+DL+TG ++KP +E +T TP + + FL+ ++G
Sbjct: 405 TSEEWDADLFALNTPSGIVDLKTG-RIKPHDRRERMTKLATATPHGDCARWRAFLEDITG 463
Query: 476 YFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535
+ Y R VG L G A + G G +GKS +N + G+ Y +A
Sbjct: 464 --GDTALQAYLQRMVGYCLTGATSAHALFFLYGTGANGKSVFVNTLATILGD-YATSAPM 520
Query: 536 SDIMQNRPPEAGKANPS-LIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
M+ R G +P+ L L G+R V ET + N +K+K +TGGD ++AR
Sbjct: 521 DTFMEAR----GDRHPTDLAGLRGARFVSSIETEQGRRWNESKVKAITGGDKVSARFMRQ 576
Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK--PIANRDASFAQKLETKYT 652
+ + P F I N +RN D+A RR +IPF P RD +KL +
Sbjct: 577 DFFEYLP-QFKLVIAGNHKPAIRNVDEAMKRRLHLIPFTVTIPPEKRDGQLTEKLLAERD 635
Query: 653 LEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESH 712
W ++G A+ GL+ P + A EE + D+ IG+ L EE+
Sbjct: 636 -GILAWAVEGCLAWQRDGLNP--PASVVSATEE----------YFDEEDAIGDFLDEEAQ 682
Query: 713 -------SLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRI 765
++A + ++E ++R + L +GF R ++ K
Sbjct: 683 RFEQARVAVADVFQRWQEWATRRGEYVGTSRWLAQQLANRGF----GRARLHGGVKG--- 735
Query: 766 IKGLKLKP 773
+ GL LKP
Sbjct: 736 LAGLSLKP 743
>gi|302876789|ref|YP_003845422.1| phage/plasmid primase, P4 family [Clostridium cellulovorans 743B]
gi|307687470|ref|ZP_07629916.1| phage/plasmid primase, P4 family protein [Clostridium cellulovorans
743B]
gi|302579646|gb|ADL53658.1| phage/plasmid primase, P4 family [Clostridium cellulovorans 743B]
Length = 755
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 106/374 (28%), Positives = 157/374 (41%), Gaps = 36/374 (9%)
Query: 411 AGSIFSITSDLLDSSSRFLGEQDGILDLETGQK-VKPTKEL-YITKSTGTPFVEGEPSQE 468
A S+ +I LD + L +LE G V+P ITK T E P E
Sbjct: 400 AKSMVTIKVSDLDKNPVLLNTPFATYNLEKGMAGVQPHDPFDLITKIT-----EVSPGDE 454
Query: 469 FLD-----LVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKY 523
+D L + + +E+++Y +G+A +G + I G G +GKST N I
Sbjct: 455 GMDIWLEALETFFCGDQELIEYVQMVIGLAAIGKVYEEFIIIAYGDGANGKSTFWNTIAR 514
Query: 524 AFGNQYVINAEASDI--MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM 581
G +SDI M N+ A P + L G R++I SE E +N A +KQ+
Sbjct: 515 VLGTYS--GKISSDILTMGNKV----NAQPEMAELKGKRLIIASEMQEGVRLNTAMVKQL 568
Query: 582 TGGDCMTARLNYGNTYSESPASFTPFIVPNKHL-FVRNPDDAWWRRYIVIPFDKPI-ANR 639
D + A Y + + PA ++ HL V DD WRR VIPF+ I N
Sbjct: 569 CSTDEIQACKKYKDPFHFMPAH--QVVLYTNHLPRVGANDDGIWRRLKVIPFNAKIKGNS 626
Query: 640 DA-SFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID 698
D ++A L KW ++G + V P+V A E R+ D +I
Sbjct: 627 DIKNYADYLFENAGPAIMKWIIEGAEKVSKANHKVADPKVVRDAVEAYREDNDWLGHFIA 686
Query: 699 DCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEK 758
+CC++ ++ E+S + Y Y Q Y R ST + + GF R K K
Sbjct: 687 ECCEVDDSFEEKSGEFYQQYRAYCIQNGEYIR---STTDFYSAIDKAGFY----RHKTNK 739
Query: 759 EWKSKRIIKGLKLK 772
++ G+KLK
Sbjct: 740 ----GVMVHGVKLK 749
>gi|254385240|ref|ZP_05000571.1| conserved hypothetical protein [Streptomyces sp. Mg1]
gi|194344116|gb|EDX25082.1| conserved hypothetical protein [Streptomyces sp. Mg1]
Length = 464
Score = 94.7 bits (234), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 104/455 (22%), Positives = 186/455 (40%), Gaps = 40/455 (8%)
Query: 293 HHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKIT 352
HH + GL+ SD N +F G + + WY+ D W + D
Sbjct: 2 HHATV--AGLIPDTLSDRGNAKLFVRLYAGDYRHVPGL-GWYRWDTTR---WQVDEDDTV 55
Query: 353 ASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAG 412
L + +P + N + +RR+ + + Q+ +A
Sbjct: 56 VWAAGDLAEAIA-----TTDPRGIHSNQALQK------HRRRALSTSGMNAMLTQA-KAA 103
Query: 413 SIFSITSDLLDSSSRFLGEQDGILDLETG--QKVKPTKELYITKSTGTPFVEGEPS-QEF 469
+ ++LLD+ L GI+DL TG + +P K+ + ++ P + P F
Sbjct: 104 PGMVLRAELLDADPYALCTPAGIVDLHTGLIRTPEPDKDFHSRSTSTAPKSQPTPRWNRF 163
Query: 470 L-DLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528
L D E E+ D+ +G ++ G AQ + G G +GKS L++++ G+
Sbjct: 164 LADTFGDDAEGREMTDFLHLMLGYSITGDVGAQVMPFLFGSGKNGKSVLLDVLMKLLGD- 222
Query: 529 YVINAEASDIM----QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGG 584
Y A +M + P E L L G R+++ SE D+ + A++K +TGG
Sbjct: 223 YADAAPPGFLMARTFEGHPTE-------LAELHGRRVIVCSEVKPGDKFDEARVKLLTGG 275
Query: 585 DCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDAS 642
D + AR + +S +P + +++ N V A+WRR ++PF+K +++ + +
Sbjct: 276 DRIKARRMRQDFFSFAP-THKLWLIGNHRPEVGTGGFAFWRRMRLVPFEKVVSDDRKIDN 334
Query: 643 FAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCD 702
A L T+ W + G + Y++ D+ P A + D + ++CC
Sbjct: 335 LADILVTEEGPGILAWLIDGARRYLAGEKDLTGPAPVRIATTAYAETEDHTGRFFEECCT 394
Query: 703 IGENLWEESHSLAKSYSEYREQELNYDRKRISTRT 737
+ E A+ YS YR N +S+R
Sbjct: 395 FDPDHRAEQ---ARLYSVYRTWCQNEGAPTVSSRA 426
>gi|116326764|ref|YP_803301.1| hypothetical protein TNAV2c_gp078 [Trichoplusia ni ascovirus 2c]
gi|102231772|gb|ABF70595.1| hypothetical protein [Trichoplusia ni ascovirus 2c]
Length = 1046
Score = 94.4 bits (233), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 68/253 (26%), Positives = 117/253 (46%), Gaps = 11/253 (4%)
Query: 454 KSTGTPFVEGEP-SQEFLDLV-SGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGG 511
K P+ + EP + EF+++ S F +E+ +YF G N +++ GVG
Sbjct: 712 KCKYIPYEQLEPEAIEFVNIFYSSLFPDKEICEYFQLSCSQIFGGRNVFKQYQVWTGVGN 771
Query: 512 SGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEND 571
+GKS + L + G + + ++ + G ANP + RL G R+V+ E ++D
Sbjct: 772 NGKSMCIKLFETMLGRLF--SKLNKSVLTSLKHNIGAANPDMYRLRGVRMVVTDELAKSD 829
Query: 572 EINAAKIKQMTGGDCMTARLNYGNTYSESP--ASFTPFIVPNKHLFVRNPDDAWWRRYIV 629
E+N + K ++GGD AR Y + + A F P IV N +R+PD+A WRR V
Sbjct: 830 ELNVGQTKLLSGGDSFIARDLYQKSTQMATIKAQFIPIIVCNDLPLLRDPDEAAWRRERV 889
Query: 630 IPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQG 689
IPF+ A ++ +LE + ++ ++ + + CL K + +
Sbjct: 890 IPFESYFA-----YSNELEIPEEIPKERIQMRDDNIMVKINKYMPAFASCLLKKYIDFEK 944
Query: 690 TDTYQAWIDDCCD 702
+ DDCC+
Sbjct: 945 LRRSSPYNDDCCE 957
>gi|134287274|ref|YP_001110970.1| ATPase [Heliothis virescens ascovirus 3e]
gi|133722182|gb|ABO37304.1| ATPase [Heliothis virescens ascovirus 3e]
Length = 1052
Score = 94.4 bits (233), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 63/219 (28%), Positives = 105/219 (47%), Gaps = 9/219 (4%)
Query: 422 LDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVE-GEPSQEFLDLVSGYFES- 479
+D + + +D + +T K T E I++ +V E + E V+ +F S
Sbjct: 678 MDDNDNIIAFKDMVFCRDTLTLRKGTPEDMISRCLNCNYVPYDELTDEVRKFVNDFFTSL 737
Query: 480 ---EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEAS 536
EV +YF V G N ++++ GVG +GKS L+ + + G ++ S
Sbjct: 738 FPDPEVKEYFLLSVAQIFRGSNIFKQYMVWTGVGNNGKSVLIRMFECLLG-PLLVKLSKS 796
Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNT 596
++ N+ + G NP + +L G R+ + E +D+IN + K ++G D AR Y +
Sbjct: 797 VLISNKM-DVGSVNPDMCKLQGVRLAVTDEIAGSDDINVGQAKLLSGNDTFMARDLYMKS 855
Query: 597 YSESP--ASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFD 633
P A F P IV N +R PD+A W+R+ +IPFD
Sbjct: 856 AEMEPIKAQFIPIIVCNDLPSLREPDEAAWKRFHIIPFD 894
>gi|71900480|ref|ZP_00682610.1| Phage/plasmid primase P4, C-terminal [Xylella fastidiosa Ann-1]
gi|71729720|gb|EAO31821.1| Phage/plasmid primase P4, C-terminal [Xylella fastidiosa Ann-1]
Length = 845
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 83/308 (26%), Positives = 133/308 (43%), Gaps = 27/308 (8%)
Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLD--- 471
+ + LD++ L +G +DL TG E YIT+ F + EF+
Sbjct: 471 LRVPQEQLDTNPWLLNCANGTVDLRTGTLKAHRPEDYITRVVPINFDPKATAPEFITTLA 530
Query: 472 -LVSGYFESEE-VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529
+ Y ES + + + R G G + Q+F + G G +GKSTL++LI G
Sbjct: 531 RITCEYGESSKPLCAFLQRWFGYCATGEVREQKFAVLYGDGNNGKSTLLDLITGILGRYS 590
Query: 530 VINAEASDIMQNRPPEAGKANPSLIR-LMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588
+ A +N P +P+ I L G R+V E+ E + + +KQ TGGD +
Sbjct: 591 GVAAPGLLTGKNGP-----QHPNAIADLAGRRMVTTHESGEGEVLREDFVKQATGGDTLK 645
Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF--------DKPIAN-- 638
AR YG + P + +K + ++ D WRR ++IPF + I N
Sbjct: 646 ARYLYGEFFEFKPTHKLQLLTNHKPV-IKGQDSGIWRRIMLIPFKAKFDAAEGEEIGNGK 704
Query: 639 --RDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAW 696
RD A+KL + W + G + GL P++ L A E+ ++ D +
Sbjct: 705 YPRDMRIAEKLAAERE-GVLAWIVAGAVEWYKNGLRP--PDIVLAASEDYKEEQDRVGQF 761
Query: 697 IDDCCDIG 704
ID+ C+ G
Sbjct: 762 IDEECETG 769
>gi|116630098|ref|YP_815270.1| phage DNA polymerase [Lactobacillus gasseri ATCC 33323]
gi|116095680|gb|ABJ60832.1| Phage DNA polymerase, ATPase domain [Lactobacillus gasseri ATCC
33323]
Length = 788
Score = 94.0 bits (232), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 93/364 (25%), Positives = 160/364 (43%), Gaps = 34/364 (9%)
Query: 422 LDSSSRFLGEQDGILDLETG----QKVKPTKELYITKSTG-TPFVEGEPS-QEFLDLVSG 475
D++ L DG +L+ G Q+++ + ITKST P +G QE L+
Sbjct: 444 FDANPFLLNTPDGPYNLKQGIHGQQEIQASD--LITKSTSCVPGSQGNSIWQEALNTF-- 499
Query: 476 YFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN---QYVIN 532
+ +++Y VG+ +G + I G G +GKST N I G+ +
Sbjct: 500 FCNDLALINYVQEIVGLVAIGQVYLEALIIAYGSGRNGKSTFWNTIANVLGSYTGHLSAD 559
Query: 533 AEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLN 592
A + + +N PE + + G R++I +E E +N + +KQ+ D + A
Sbjct: 560 ALTTGVRRNVKPE-------MAEVKGKRLIISAELEEGKRLNTSIVKQLCSTDEIYAEKK 612
Query: 593 YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETK 650
Y +S +P S T + N V D+ WRR IVIPF IA N ++AQ L +
Sbjct: 613 YMKPFSFTP-SHTIVLYTNYLPHVGGNDEGIWRRLIVIPFKATIAKHNDIKNYAQYLTEQ 671
Query: 651 YTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEE 710
+W ++G + I + + P KA ++ D ++++ C++ + ++
Sbjct: 672 AGPAVLQWIIEGAQRIIQQNYQLTTPAAVTKAVKDYHADNDWLGHFLNENCELDSSYQQK 731
Query: 711 SHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLK 770
S L + Y EY + Y R ST LK GF +R++ + ++GL+
Sbjct: 732 SGDLYQKYREYCQGIGEYTR---STTDFYTALKNAGF----QRQRK----NTGSYVRGLR 780
Query: 771 LKPA 774
LK +
Sbjct: 781 LKAS 784
>gi|238854132|ref|ZP_04644479.1| phage DNA polymerase, ATPase domain [Lactobacillus gasseri 202-4]
gi|238833208|gb|EEQ25498.1| phage DNA polymerase, ATPase domain [Lactobacillus gasseri 202-4]
Length = 782
Score = 94.0 bits (232), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 93/364 (25%), Positives = 160/364 (43%), Gaps = 34/364 (9%)
Query: 422 LDSSSRFLGEQDGILDLETG----QKVKPTKELYITKSTG-TPFVEGEPS-QEFLDLVSG 475
D++ L DG +L+ G Q+++ + ITKST P +G QE L+
Sbjct: 438 FDANPFLLNTPDGPYNLKQGIHGQQEIQASD--LITKSTSCVPGSQGNSIWQEALNTF-- 493
Query: 476 YFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN---QYVIN 532
+ +++Y VG+ +G + I G G +GKST N I G+ +
Sbjct: 494 FCNDLALINYVQEIVGLVAIGQVYLEALIIAYGSGRNGKSTFWNTIANVLGSYTGHLSAD 553
Query: 533 AEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLN 592
A + + +N PE + + G R++I +E E +N + +KQ+ D + A
Sbjct: 554 ALTTGVRRNVKPE-------MAEVKGKRLIISAELEEGKRLNTSIVKQLCSTDEIYAEKK 606
Query: 593 YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETK 650
Y +S +P S T + N V D+ WRR IVIPF IA N ++AQ L +
Sbjct: 607 YMKPFSFTP-SHTIVLYTNYLPHVGGNDEGIWRRLIVIPFKATIAKHNDIKNYAQYLTEQ 665
Query: 651 YTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEE 710
+W ++G + I + + P KA ++ D ++++ C++ + ++
Sbjct: 666 AGPAVLQWIIEGAQRIIQQNYQLTTPAAVTKAVKDYHADNDWLGHFLNENCELDSSYQQK 725
Query: 711 SHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLK 770
S L + Y EY + Y R ST LK GF +R++ + ++GL+
Sbjct: 726 SGDLYQKYREYCQGIGEYTR---STTDFYTALKNAGF----QRQRK----NTGSYVRGLR 774
Query: 771 LKPA 774
LK +
Sbjct: 775 LKAS 778
>gi|300909417|ref|ZP_07126878.1| P4 family prophage LambdaSa04 [Lactobacillus reuteri SD2112]
gi|300893282|gb|EFK86641.1| P4 family prophage LambdaSa04 [Lactobacillus reuteri SD2112]
Length = 751
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 97/361 (26%), Positives = 156/361 (43%), Gaps = 32/361 (8%)
Query: 422 LDSSSRFLGEQDGILDLETG---QKVKPTKELYITKSTGT-PFVEGEPS-QEFLDLVSGY 476
D+ L +G +L+ G Q+ EL ITKST P +G QE L + +
Sbjct: 405 FDADPFLLNTPNGPFNLKKGMHGQQEIQADEL-ITKSTSCIPGNQGASLWQE--ALTTFF 461
Query: 477 FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN---QYVINA 533
+ +++Y VG+ +G + I G G +GKST N I G +A
Sbjct: 462 CGDQALINYVQEIVGLVAIGQVYLEALIIAYGSGRNGKSTFWNTIANVLGTYTGHLSADA 521
Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593
+ + +N PE + + G R++I +E E +N + +KQ+ D + A Y
Sbjct: 522 LTTGVRRNVKPE-------MAEVKGKRLIISAELEEGKRLNTSIVKQLCSTDEIYAEKKY 574
Query: 594 GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD--ASFAQKLETKY 651
+S +P S T + N V D+ WRR IVIPF IA R+ ++AQ L K
Sbjct: 575 MKPFSFTP-SHTIVLYTNYLPHVGGNDEGIWRRLIVIPFKATIAKRNDIKNYAQYLTEKA 633
Query: 652 TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEES 711
+W ++G + I + + P KA D ++++ C++ ++S
Sbjct: 634 GPAVLQWIIEGAQRTIQQNYRLTTPAAVEKAVNAYHADNDWLGHFLNEKCELNPEYEQKS 693
Query: 712 HSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771
L + Y EY + Y R ST LK GF ++ K+ + R I+GL+L
Sbjct: 694 GDLYQKYREYCQGIGEYIR---STTDFYTALKNAGF------QRQHKQ--NGRFIEGLRL 742
Query: 772 K 772
K
Sbjct: 743 K 743
>gi|300933382|ref|ZP_07148638.1| phage-associated protein [Corynebacterium resistens DSM 45100]
Length = 755
Score = 93.6 bits (231), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 95/382 (24%), Positives = 164/382 (42%), Gaps = 42/382 (10%)
Query: 410 EAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVK---PTKELYITKSTGTPFVEGEPS 466
EA + T + LD+ L G DL G + +L +++ P +G
Sbjct: 399 EARPMLLTTPEQLDADPYLLNTPSGTYDLRHGAASRRDHDPADLVTKQTSLDPGTDGAHL 458
Query: 467 -QEFLDLVSGYFESE-EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524
QE L++ +F+ + E++ Y R VG+A +G + + G G +GKST N I
Sbjct: 459 WQEALEV---FFQGDAELISYVQRIVGLAAIGQVFVEALVIAYGDGRNGKSTFWNTIARV 515
Query: 525 FGNQYVINAEASDI----MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQ 580
G Y N A + M+N PE +A G R++I +E+ E ++ + +KQ
Sbjct: 516 LGT-YAGNMSADVLTIGGMRNVKPELAEAK-------GKRLIISAESEEGVRMSTSVVKQ 567
Query: 581 MTGGDCMTARLNYGNTYSESPASFTP---FIVPNKHL-FVRNPDDAWWRRYIVIPFDKPI 636
+ D + A Y ++P +FTP I+ HL V D WRR IVIPF+ I
Sbjct: 568 LASTDQIYAEKKY-----KAPFAFTPSHTLILYTNHLPRVGAMDAGIWRRLIVIPFEAKI 622
Query: 637 ANRD--ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQ 694
++A L T+ W ++G + ++ + P ++A R+ + +
Sbjct: 623 EGTSDIKNYADYLYTQAGGAILAWIMEGARLIHAENYHLKAPARVVEASAAYREENNWFA 682
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
++D CD+ L E + L ++Y + + R + ++ GF
Sbjct: 683 QFLDANCDLDPGLSERAGDLYQAYRAWAMSTSGWARPMVD---FNATVEHHGF------- 732
Query: 755 KIEKEWKSKRIIKGLKLKPAFE 776
+ K+ KS + GL+LK F+
Sbjct: 733 -VRKKMKSGIRVFGLQLKNEFD 753
>gi|291556511|emb|CBL33628.1| phage/plasmid primase, P4 family, C-terminal domain [Eubacterium
siraeum V10Sc8a]
Length = 752
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 103/397 (25%), Positives = 160/397 (40%), Gaps = 32/397 (8%)
Query: 389 TDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETG--QKVKP 446
T YR ++ A E + I LD+ L DL G +
Sbjct: 376 TTYRNFAIKRRDSKNIFAALKETRPMVEIDQRQLDADEFLLNTPSATYDLRIGIASAHEH 435
Query: 447 TKELYITKSTGT-PFVEGEPSQEFLD-LVSGYFESEEVMDYFTRCVGMALLGGNKAQRFI 504
T YITK T P +G ++ + D L++ + E++ Y G++ +G + I
Sbjct: 436 TPADYITKQTSVDPADKG--TEIWQDALITFFCGDNELISYVQEVAGLSAIGKVCVEALI 493
Query: 505 HIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM----QNRPPEAGKANPSLIRLMGSR 560
G G +GKST N + G Y N A + +N PE +A G R
Sbjct: 494 IAYGEGRNGKSTFWNTLARVLGT-YSGNLSADTLTVGCKRNVKPELAEAK-------GKR 545
Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
++I +E E ++ A +KQ++ D + A Y + +S P S T + N V D
Sbjct: 546 LIIAAELEEGMRLSTANVKQLSSTDEIYAEKKYKDPFSFVP-SHTLVLYTNHLPKVGALD 604
Query: 621 DAWWRRYIVIPFDKPIANRD--ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEV 678
WRR IVIPF+ I ++A L K KW + G K I + + P V
Sbjct: 605 AGTWRRLIVIPFNARIEGSSDIKNYADYLYAKAGGAILKWIMAGAKRVIERDYHIVKPAV 664
Query: 679 CLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738
+A + R+ D + D+CC I + +S +Y Y Q +Y R ST
Sbjct: 665 VEEATRKYRENNDWLSQFFDECCVIDPDGKTKSGEFYTAYRSYCMQVGDYIR---STTDF 721
Query: 739 TLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAF 775
L+ GF + ++ + +I GL+LK F
Sbjct: 722 YAALEAAGF--------VRRKTSAGIMISGLQLKSDF 750
>gi|95928523|ref|ZP_01311270.1| Phage/plasmid primase P4-like [Desulfuromonas acetoxidans DSM 684]
gi|95135313|gb|EAT16965.1| Phage/plasmid primase P4-like [Desulfuromonas acetoxidans DSM 684]
Length = 498
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 82/334 (24%), Positives = 140/334 (41%), Gaps = 22/334 (6%)
Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTP 459
S++K A L A + + + L D+ L Q+G +DL++G+ +E Y+TK
Sbjct: 117 SRSKIRAAGLLAADLMPLPAHL-DAHKELLNCQNGTVDLKSGELKDHDREDYLTKIAPFA 175
Query: 460 FVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQR-FIHIRGVGGSGKSTL 517
F + F+ + F ++ E + + + G +L G ++ FI G +GK+ L
Sbjct: 176 FEKDAQCPRFIAFLERAFPDNPEGIAFIQKIFGYSLTGDVSEKKIFILWGAAGNNGKTLL 235
Query: 518 MNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK 577
N+ + G + + + ++ R + +L+G R V SET+ + N A
Sbjct: 236 FNVFRGILGQCFCVQLASESLVSGR---INAIRSDIAKLIGYRFVTASETDRRYKFNEAL 292
Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK--P 635
IK +TGGD +TAR + + +P FI N D A R +IPF P
Sbjct: 293 IKLLTGGDALTARHPHEREFEFTP-ELKLFIGTNAKPEFTLSDQAMLNRVCIIPFHVSIP 351
Query: 636 IANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGL-----DVDIPEVCLKAKEEERQGT 690
+D QKL + W ++G + + +GL D D V
Sbjct: 352 PEEQDKQLTQKLINEEGEGILAWAIEGARLWAKEGLGENPFDQDSASVITPVI------- 404
Query: 691 DTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQ 724
T +I CC E++H L +++ Y+E
Sbjct: 405 -TIDQFIKACCTQNPGDREKTHDLMTAFNLYKEH 437
>gi|296394743|ref|YP_003659627.1| phage/plasmid primase [Segniliparus rotundus DSM 44985]
gi|296181890|gb|ADG98796.1| phage/plasmid primase, P4 family [Segniliparus rotundus DSM 44985]
Length = 761
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 96/408 (23%), Positives = 170/408 (41%), Gaps = 38/408 (9%)
Query: 303 LASRFSDAYNKAMFSIYKKGHFL-YTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVS 361
+A R +D N + + + GH L Y AW + D++ W+ D A+ V
Sbjct: 317 VAPRLTDEANADLL-VAEHGHGLRYDPARGAWLEWDQSR---WAYRPDD--AACFQAAVK 370
Query: 362 MKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDL 421
+ + + ++E ++ + S + R ++ ++ + +
Sbjct: 371 TAKSLPEQTKEEREHKRRSLNLR----------------GLEAMVKTARRDPRIRVDPER 414
Query: 422 LDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTP--FVEGEPSQEFLDLVSGYFES 479
LD+ L G++DL TG + E TK G F + P + VS +
Sbjct: 415 LDADPMLLNTPGGVVDLATGALREHDPEALCTKLAGCAPDFAQRTPIFDAFLAVS-LADD 473
Query: 480 EEVMDYFTRCVGMALLG-GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538
E++ Y R G+A +G + F+H G G +GKS N++ G+ Y A +
Sbjct: 474 AELIGYLRRLAGLAAIGLPSPILPFLH--GAGANGKSVFANILLRVLGD-YATTAPPDFL 530
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598
+ +R + + RL G R+V+ SE + + A+IK +TGGD +TAR YG ++
Sbjct: 531 LASR---GDRHEAEIARLKGMRLVVCSEVERDSRFDEARIKLLTGGDRLTARFLYGQHFT 587
Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFD--KPIANRDASFAQKLETKYTLEAK 656
+P S +++ N VR ++WRR +IPF P A R + + + +
Sbjct: 588 FAP-SHCVWLMGNHQPEVRAGGVSFWRRMRMIPFTVVVPEAERVDALDELIAQEEGPGVL 646
Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIG 704
W ++G GL PE A + + D ++ + C IG
Sbjct: 647 AWIVRGALEARRDGL--ADPEKVRAATRDYAEEEDALGRFLAERCRIG 692
>gi|71902152|ref|ZP_00684176.1| Phage/plasmid primase P4, C-terminal [Xylella fastidiosa Ann-1]
gi|71728086|gb|EAO30289.1| Phage/plasmid primase P4, C-terminal [Xylella fastidiosa Ann-1]
Length = 848
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 81/308 (26%), Positives = 130/308 (42%), Gaps = 27/308 (8%)
Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVS 474
+ + LD++ L +G +DL TG E YIT+ F + EF+ ++
Sbjct: 471 LRVPQEQLDTNPWLLNCANGTVDLRTGTLKAHRPEDYITRVVPLNFDPKATAPEFITTLA 530
Query: 475 GYFESE-----EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529
E + + R G G + Q+F + G G +GKSTL++LI G
Sbjct: 531 RITCEEGQAGKPLCAFLQRWFGYCATGEVREQKFAVLYGDGNNGKSTLLDLITGILGRYS 590
Query: 530 VINAEASDIMQNRPPEAGKANPSLIR-LMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588
+ A +N P +P+ I L G R+V E+ E + + +KQ TGGD +
Sbjct: 591 GVAAPGLLTGKNGP-----QHPNAIADLAGRRMVTTHESGEGEVLREDFVKQATGGDTLK 645
Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF--------DKPIAN-- 638
AR YG + P + N ++ D WRR ++IPF + I N
Sbjct: 646 ARYLYGEFFEFKPTHKLQLLT-NHKPAIKGQDSGIWRRIMLIPFKAKFDAAEGEEIGNGK 704
Query: 639 --RDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAW 696
RD A+KL + W + G + GL P++ L A E+ ++ D +
Sbjct: 705 YPRDMRIAEKLAAERE-GVLAWIVAGAVEWYKNGLRP--PDIVLAASEDYKEEQDRVGQF 761
Query: 697 IDDCCDIG 704
ID+ C++G
Sbjct: 762 IDEECELG 769
>gi|322511112|gb|ADX06425.1| putative VV D5 family helicase [Organic Lake phycodnavirus 2]
Length = 824
Score = 92.0 bits (227), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 76/294 (25%), Positives = 140/294 (47%), Gaps = 27/294 (9%)
Query: 422 LDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVE----GEPSQEFLDLVSGY- 476
LD++ +G ++G++D++ + K ++ YI K+T ++ E S E +D ++ +
Sbjct: 461 LDTNPYLVGCKNGVVDIKQKEFRKGSQNDYIHKTTNIDYMPLQHYQEVSPEIIDELNTFM 520
Query: 477 ---FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
F +++ +Y + L+G N Q F GVG +GKS L++L+ G+ Y
Sbjct: 521 YQLFPEQDLREYMWEHLASTLIGTNNNQTFNIYLGVGANGKSILVDLMSKILGD-YKGTV 579
Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593
++ I Q R G + + +L+G R ++ E ++ D IN +K++TGGD + R +
Sbjct: 580 PSTLITQKRTS-IGSTSSEVYQLIGRRYAVMQELSKGDTINEGIMKEITGGDPIQCRALF 638
Query: 594 GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF----------DKPIANRDASF 643
++ + P F + N V++ DD WRR V F D+ +D +
Sbjct: 639 KDSVTFIP-QFKLVVCTNVLFDVKSNDDGTWRRIRVCEFKSKFTDHPYEDRAFPEKDYPY 697
Query: 644 AQKLETKYTLEAKKW---FLKGV--KAYISKGLDVDIPEVCLKAKEEERQGTDT 692
K++ + K W F + KA+ ++G +D P V L+ E R+G D
Sbjct: 698 QFKIDKNLNQKFKYWAPVFFSMLVEKAFQTQGKVIDRPCV-LEPTENYRKGQDV 750
>gi|162452338|ref|YP_001614705.1| hypothetical protein sce4063 [Sorangium cellulosum 'So ce 56']
gi|161162920|emb|CAN94225.1| phage-related protein [Sorangium cellulosum 'So ce 56']
Length = 458
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 104/221 (47%), Gaps = 15/221 (6%)
Query: 422 LDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE------FLDLVSG 475
D+ L ++G+LDL TG+ + + + F +P E FL V+G
Sbjct: 222 FDADPWLLNCRNGVLDLRTGELRDHDRRDMMRRIVPVAF---DPDAELPVWDRFLADVTG 278
Query: 476 YFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535
EE++ + R G L G + + + G SGKST + +K G +Y A+
Sbjct: 279 --NDEELIGFLRRAAGYTLTGDVRHEVLFFVHGPPASGKSTFLEALKITMG-EYAAKADF 335
Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595
+ R ++G + RL G+R+V+ E +E + +KQ+TGGD +TAR Y
Sbjct: 336 ETFIARR--DSGGPRNDIARLAGARLVLSIEVDEGKRLAEGLVKQLTGGDTVTARFLYRE 393
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI 636
++ PA F ++ N VR+ D A WRR + IPF+ +
Sbjct: 394 SFEFKPA-FKLWLAANDAPRVRDDDAAIWRRILRIPFEHTV 433
>gi|196885459|gb|ACG80592.1| primase/helicase [Acanthamoeba castellanii mamavirus]
Length = 960
Score = 91.3 bits (225), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 82/302 (27%), Positives = 132/302 (43%), Gaps = 31/302 (10%)
Query: 422 LDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE--- 478
LD ++ +G ++G+ DLE G + I+ T ++E + E ++G+ +
Sbjct: 583 LDENNYLIGFENGVFDLEAGIFRDGCPDDCISLCTNYKYIEIDEDDETFKNINGFLKKIQ 642
Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
+ + +Y + L G + F + G G +GKS LM L+KY G+ Y + D
Sbjct: 643 PDKSMREYILTLLSTCLSGTISEESFYVLTGSGANGKSKLMELLKYTLGDLY----KPMD 698
Query: 538 I--MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595
I + + + A+P L G R E +DEIN +K TGGD + AR Y
Sbjct: 699 IRLLTEKRSSSSSASPELADKKGIRACPFDEPKASDEINTGFMKIFTGGDTIAARALYKE 758
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF-DKPIANRDASFAQKLE------ 648
P F PF++ N+ +++ DD WRR VIPF K I + +A+ K E
Sbjct: 759 PIYFKP-QFKPFLLCNELPTIKSDDDGTWRRLKVIPFLSKFIKHSEATKKMKKEGLPKNH 817
Query: 649 ----TKYTLEAKKW-------FLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWI 697
T + + W LK + Y GL P++ + E R+ D +Q +I
Sbjct: 818 FWADTSLSEKLPDWKQGFMCLLLKYFRKYRKHGLIH--PKLVTQHTVEYRKKCDVFQDFI 875
Query: 698 DD 699
D
Sbjct: 876 GD 877
>gi|320013062|gb|ADW07911.1| phage/plasmid primase, P4 family [Streptomyces flavogriseus ATCC
33331]
Length = 515
Score = 90.5 bits (223), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 72/282 (25%), Positives = 131/282 (46%), Gaps = 10/282 (3%)
Query: 393 RQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQ--KVKPTKEL 450
R+ S K+ +A + S+ D+LD + L G++DL G+ K P ++L
Sbjct: 121 RRRTMSTSGMKALLHQAKAAPVLSLDPDVLDGDAYSLCTPAGVVDLRNGRLHKPNPLRDL 180
Query: 451 YITKSTGTPFVEGEPS-QEFLDLVSGY-FESEEVMDYFTRCVGMALLGGNKAQRFIHIRG 508
+ + P P FLD G + +E++D+ +G ++ G AQ + G
Sbjct: 181 HSRATNVAPQATPTPRWHAFLDDTFGADTKGQEMIDFLHLLLGYSITGDVGAQVLPFLWG 240
Query: 509 VGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN 568
G +GKS L++++ G+ Y A +M + + L L G RI + SE
Sbjct: 241 KGANGKSVLLDVMIQVMGD-YADAAPPGFLMDKG--NFAEHSTELTELHGRRIFVCSELK 297
Query: 569 ENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYI 628
ND+ + A++K +TGGD + AR + +S +P + +++ N V A+WRR
Sbjct: 298 PNDKFDEARVKLLTGGDKIKARRMRQDYFSFTP-THKLWLLGNHQPEVGTGGHAFWRRIR 356
Query: 629 VIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYIS 668
+IPF++ +A + + A +L + W ++G Y++
Sbjct: 357 LIPFERVVAADRKIDNLAGELVEEEGPGILHWLIQGAMRYLT 398
>gi|319783591|ref|YP_004143067.1| phage/plasmid primase, P4 family [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317169479|gb|ADV13017.1| phage/plasmid primase, P4 family [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 451
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 77/274 (28%), Positives = 124/274 (45%), Gaps = 13/274 (4%)
Query: 451 YITKSTGT-PFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGV 509
Y+TKST P + EFL+LV+ ++DY R G L G + G
Sbjct: 142 YMTKSTAVGPGGDCSLWLEFLNLVTS--GDGALIDYLQRVCGYCLTGLTVEHALFFLWGP 199
Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569
GG+GKST + I G+ A+ + I + + L L G+R+V +ET +
Sbjct: 200 GGNGKSTFIETISGVVGDY----AKTAGIDTFTASASDRHPTDLAALQGARLVTATETAK 255
Query: 570 NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIV 629
+ +IK +TGGD ++AR + + SP F I N + N DDA+ RR+ +
Sbjct: 256 GRSWDETRIKTLTGGDRISARYMRQDFFEYSP-QFKLMIAGNNKPALVNVDDAFRRRFHM 314
Query: 630 IPFDKPIAN--RDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEER 687
IPF I + R F+ +L ++ W ++G + GL P + A +E
Sbjct: 315 IPFIVRIPDDKRILGFSDRLREEWP-GILAWMIEGAGHWRRLGLSP--PPAVVAATQEYL 371
Query: 688 QGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEY 721
DT AW+++C + + +E SL S+ +
Sbjct: 372 DSEDTIGAWLEECTERVADGFESRQSLFSSWKAF 405
>gi|114765603|ref|ZP_01444704.1| hypothetical protein 1100011001288_R2601_22901 [Pelagibaca
bermudensis HTCC2601]
gi|114542052|gb|EAU45085.1| hypothetical protein R2601_22901 [Roseovarius sp. HTCC2601]
Length = 605
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 81/312 (25%), Positives = 136/312 (43%), Gaps = 18/312 (5%)
Query: 467 QEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFG 526
Q FLD V S ++ + R VG L G Q+ + G G +GKST ++ + F
Sbjct: 284 QAFLDRVQ---PSRDMQVFLQRYVGYCLTGKTTEQKLVFNYGGGRNGKSTFVDTLAKIFA 340
Query: 527 NQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDC 586
+ Y + + A P L+RL G+R V SE + + A IK +TGG+
Sbjct: 341 D-YGTTVPIETLTGAEQRKGSDATPDLVRLPGARFVRASEPEQGTRMKEAMIKALTGGEA 399
Query: 587 MTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQK 646
+ R + E F I N +R DD WRR +++P+ + I +
Sbjct: 400 IMIR-RMMQEFVEVTPEFKLMISGNHKPEIRGSDDGIWRRVLLVPWLEQIPEEEVD--PT 456
Query: 647 LETKYTLEAK---KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDI 703
L K EA W ++G A+ GL IP+ +A +E RQ +D + ++ C+I
Sbjct: 457 LPDKLWAEAPGILAWAVQGYLAWAEGGL--SIPDAVRQATDEYRQESDKLRMFLQSECEI 514
Query: 704 G--ENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK-GFIGGIKREKIEKEW 760
+ +E+S L +++ + L+ +RT+ LK + G + G E+
Sbjct: 515 TGLPDHFEKSSELRDAFNGWL---LDLGDAAWGSRTIARALKDRAGVVKGPNGEQFRPVK 571
Query: 761 KSKRIIKGLKLK 772
+S G+++K
Sbjct: 572 RSDTGYSGIRIK 583
>gi|301058441|ref|ZP_07199462.1| phage/plasmid primase, P4 family, C-terminal domain protein [delta
proteobacterium NaphS2]
gi|300447497|gb|EFK11241.1| phage/plasmid primase, P4 family, C-terminal domain protein [delta
proteobacterium NaphS2]
Length = 512
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 79/320 (24%), Positives = 140/320 (43%), Gaps = 17/320 (5%)
Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKEL-YITKST--GTPFVEGEPSQEFLD 471
++S+ D ++G++DL+TG+ ++P + YITK++ G +E +
Sbjct: 156 LEVSSEQFDQDPWLFACKNGVIDLQTGE-IRPGRPHDYITKASPVGWEGIEAPAPEWERV 214
Query: 472 LVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVI 531
L+ + E++ Y R G A++G G G +GK+T I G+
Sbjct: 215 LLEIHNGDIEIVRYMQRLYGSAIVGKTSEAVVPVQCGGGRNGKTTENETIAAVVGDMAGP 274
Query: 532 NAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARL 591
+ Q R + +P L+ L G RI SE E +AA++K ++G D +TAR
Sbjct: 275 IPSQMLLDQGRYQNSAAPSPDLMDLKGLRIAFASEIEEGRRFSAARVKWLSGSDTITARA 334
Query: 592 NYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR----------DA 641
+ ++ + T F++ N D A+W R +IP++ +R D
Sbjct: 335 PHDRRSTKFRPTHTLFLMTNSKPGAPANDFAFWSRVNLIPYEISFVDRQPKTPNERRIDK 394
Query: 642 SFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCC 701
+KL ++Y W ++G + GL PE L A E+ R+ D Q +ID+ C
Sbjct: 395 HIPEKLTSEYP-GILTWLVRGCLQWQKMGLCP--PEKVLAATEQYRRDEDFLQDFIDEYC 451
Query: 702 DIGENLWEESHSLAKSYSEY 721
+ + E + L ++ Y
Sbjct: 452 FVDPSETESAADLYDAFKGY 471
>gi|320166048|gb|EFW42947.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 766
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 118/517 (22%), Positives = 209/517 (40%), Gaps = 68/517 (13%)
Query: 217 FGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYD-EENFNYKWDTFDFE 275
G E+YN + +W V+ + +++ ++ +R+S Q + +E F+ W+
Sbjct: 264 LGPEYYN-DYQKWFNVLAVIKTVFGDTAEAYDLCKRFSAQAGNKEWDEKFDGFWERNLCA 322
Query: 276 EIGDTAK---KRSTFTSLFYHHGKLI--------PKGLLASRFSDAYNKAMFSIYKKGHF 324
+ G T K K +S + K+I LLA D + +
Sbjct: 323 DNGWTMKTLYKMVGGSSKLKCNEKVINNLGDDQRDAELLAMLLEDRLTSVSVQEKEAEFY 382
Query: 325 LYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPR 384
LY W KK ++ MN LVS + E K S++ +
Sbjct: 383 LYDEAEALWKKK---------------VSTQMNVLVSQTMQKYLQGWIDEYKCKISEASQ 427
Query: 385 FWFNTDYRRQNVEENSKAKSTA-----QSLEAGSIFSITSDLLDSSSRFLGEQD-GILDL 438
+ +++ ++ K+ A Q+L + F + LDS+ L D ++DL
Sbjct: 428 L------AEEKIDQKTRKKAAAITHKLQTLLYDAQFKVK---LDSAENLLPIADRKVVDL 478
Query: 439 ETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRC------VGM 492
G+ KE Y + + + G+ + V+ F SE ++D R +G
Sbjct: 479 TNGEVRDRMKEDYFSLALSVSYEPGKGTA-----VADKFFSEIMLDRADRIEQLRLSLGY 533
Query: 493 ALLGGNKAQRFIHIRGVGGS-GKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANP 551
+L G NK+ + G GS GKS L+N++ G + I + R ++ A+P
Sbjct: 534 SLFGHNKSNLMFFLYGPDGSNGKSLLLNILTEIVGEFRATVDPSIIIGKTRLDQS--ASP 591
Query: 552 SLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPN 611
++L+G R+ +SE E +N A +KQ+TG D MTAR NYGN + S + ++
Sbjct: 592 YTMQLIGKRLGFMSELPEESVLNEAMVKQLTGADVMTARQNYGNAFEFS--CYAKMLLAT 649
Query: 612 KHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKK--------WFLKGV 663
+L + WRR ++ FD +K+ Y + K W + G
Sbjct: 650 NYLPNMKDSPSLWRRVRMVKFDACFVENPTGSQKKINVNYMRDIAKPNINQFFTWMVNGA 709
Query: 664 KAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDC 700
Y +KG +++P + R ++ + +ID C
Sbjct: 710 IEYSNKGT-IEVPADITAFIKGLRLKSNPVKLFIDKC 745
>gi|260579061|ref|ZP_05846960.1| P4 family prophage LambdaSa04, DNA primase [Corynebacterium
jeikeium ATCC 43734]
gi|258602812|gb|EEW16090.1| P4 family prophage LambdaSa04, DNA primase [Corynebacterium
jeikeium ATCC 43734]
Length = 754
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 93/383 (24%), Positives = 161/383 (42%), Gaps = 42/383 (10%)
Query: 410 EAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVK---PTKELYITKSTGTPFVEGEPS 466
EA + T + LD+ L G DL G + +L +++ P +G
Sbjct: 399 EARPMLLTTPEQLDADPYLLNTPSGTYDLRHGAASRRDHDPADLVTKQTSLDPGTDGAHL 458
Query: 467 -QEFLDLVSGYFESE-EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524
QE L++ +F+ + E++ Y R VG+A +G + + G G +GKST N I
Sbjct: 459 WQEALEV---FFQGDAELIAYVQRIVGLAAIGQVFVEALVIAYGDGRNGKSTFWNTIARV 515
Query: 525 FGNQYVINAEASDI----MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQ 580
G Y N A + M+N PE +A G R++I +E+ E ++ + +KQ
Sbjct: 516 LGT-YAGNMSADVLTIGGMRNVKPELAEAK-------GKRLIISAESEEGVRMSTSVVKQ 567
Query: 581 MTGGDCMTARLNYGNTYSESPASFTP---FIVPNKHL-FVRNPDDAWWRRYIVIPFDKPI 636
+ D + A Y ++P +FTP + HL V D WRR IVIPF+ I
Sbjct: 568 LASTDQIYAEKKY-----KAPFAFTPSHTLTLYTNHLPRVGAMDAGIWRRLIVIPFEAKI 622
Query: 637 --ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQ 694
A+ ++A L T+ W ++G + ++ + P ++A R+ + +
Sbjct: 623 EGASDIKNYADYLYTQAGGAILAWIMEGARLIHAEDYHLKAPARVVEASAAYREENNWFA 682
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
++D CD+ L E + L ++Y + + R + ++ GF
Sbjct: 683 QFLDANCDLDPGLSERAGDLYQAYRAWAMSTSGWARPMVD---FNATVEHHGF------- 732
Query: 755 KIEKEWKSKRIIKGLKLKPAFES 777
K + GL LK F++
Sbjct: 733 -TRKRTMHGMFVHGLALKNEFDN 754
>gi|304389860|ref|ZP_07371819.1| P4 family prophage LambdaSa04 [Mobiluncus curtisii subsp. curtisii
ATCC 35241]
gi|304327036|gb|EFL94275.1| P4 family prophage LambdaSa04 [Mobiluncus curtisii subsp. curtisii
ATCC 35241]
Length = 747
Score = 88.6 bits (218), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 93/372 (25%), Positives = 159/372 (42%), Gaps = 30/372 (8%)
Query: 410 EAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGT--PFVEGEPSQ 467
+A + I ++LD+ + L G DL G + +TK T T + + +
Sbjct: 399 QARPLTLINPEILDADAYLLNTPTGTWDLRDGSRRDHDPADMLTKQTATDPSDIGAQVWR 458
Query: 468 EFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527
+ L+L G +E++ Y R G+A +G + I G G +GKST N I G+
Sbjct: 459 DSLELTFG--GDQELIAYVQRVCGLAAIGKVLIEALIIAYGDGNNGKSTFWNTIARVLGS 516
Query: 528 QYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGG-DC 586
S+ + AGK N + + +R + ENDE ++ T D
Sbjct: 517 Y-------SETISAEVLIAGKKNNAKHEMAETRARRLLIAGENDE----GVRLSTSSTDK 565
Query: 587 MTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI-ANRDA-SFA 644
+ A Y + +S +P S T + N V D WRR +VIPF + I + D ++A
Sbjct: 566 IAAEKKYKDPFSFTP-SHTLVLYTNHLPKVGATDTGIWRRLVVIPFTQTIQPSVDVKNYA 624
Query: 645 QKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIG 704
L + W ++G + ++ + P ++A E+ R D + ++D+CC++
Sbjct: 625 DHLFEQAGGAVLAWIMEGARLIHAENYRLVPPACVVEASEKYRAANDWFAHFLDECCELD 684
Query: 705 ENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKR 764
L E+S +L YS YR L+ ST +++ GF + +
Sbjct: 685 PGLEEKSGAL---YSSYRAWALSRSEYVRSTSDFYAAVEKNGFTS--------RRNNRGK 733
Query: 765 IIKGLKLKPAFE 776
+I+GL+L FE
Sbjct: 734 LIRGLRLLDEFE 745
>gi|109522656|ref|YP_655468.1| gp89 [Mycobacterium phage PLot]
gi|88910763|gb|ABD58688.1| gp89 [Mycobacterium phage PLot]
Length = 983
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 71/238 (29%), Positives = 110/238 (46%), Gaps = 20/238 (8%)
Query: 448 KELYITKSTGTPF------VEGE-PSQEFL------DLVSGYFESEEVMDYFTRCVGMAL 494
+E +T STGT + V GE QE L V Y EEV + + +G +L
Sbjct: 622 REDLLTLSTGTNYLPWQELVAGEFGKQEALYASTWARAVEMYLPDEEVRLFLQKLLGYSL 681
Query: 495 LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLI 554
LG N+ + + + G GSGKST +N A G+ Y + +R + NP+L
Sbjct: 682 LGDNRERIVVFLHGPTGSGKSTFLNATLNALGD-YADVVDLGIFKGDR-----QTNPALA 735
Query: 555 RLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHL 614
+ RIV SE ++ + ++A K++TGGD +TA L Y N + +F P+I N
Sbjct: 736 YALPKRIVTCSEASQRNVLHADMFKRITGGDPLTAELKYSNESVKRKPAFVPWIATNTPP 795
Query: 615 FVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAK-KWFLKGVKAYISKGL 671
+ D A R +V+ F++ I +D L + A W ++G Y +GL
Sbjct: 796 SIPGADAAVVDRTVVVGFNEQIRKQDVGMNAMLSSPRAKTAVLAWAVEGWGMYRREGL 853
>gi|228968960|ref|ZP_04129905.1| hypothetical protein bthur0004_57100 [Bacillus thuringiensis
serovar sotto str. T04001]
gi|228790735|gb|EEM38391.1| hypothetical protein bthur0004_57100 [Bacillus thuringiensis
serovar sotto str. T04001]
Length = 300
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 85/315 (26%), Positives = 140/315 (44%), Gaps = 27/315 (8%)
Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542
M+Y R +G +L G Q + + G G +GKST +N IK G +Y A++ ++ +
Sbjct: 1 MEYMQRLIGYSLTGDISEQIMMFLVGGGSNGKSTFINTIKDLLG-EYGKQAKSDTFIKKK 59
Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602
AN + RL+G+R V E+ E ++++ + +KQ+TGG+ + AR Y E
Sbjct: 60 DT---GANNDIARLVGARFVSAIESEEGEKLSESFVKQITGGEPVLARF-LRQEYFEFVP 115
Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIVIPF--DKPIANRDASFAQKLETKYTLEAK---K 657
F F N + D+ WRR +IPF + P RD +KL +LE
Sbjct: 116 EFKVFFTTNHKPVIGGLDEGIWRRVKLIPFNLNLPSHKRDKRLPEKL----SLEMPGILN 171
Query: 658 WFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKS 717
W ++G + L P+V +A + + D ++D+ C + E E AK
Sbjct: 172 WAIEGCMKWQQGRLKE--PKVVAEATGKYKDDMDILAPFLDEVCYVDERENESITIEAKE 229
Query: 718 -YSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL---KP 773
Y+ Y N + + R+ L+ KGF K K++ + G+ L KP
Sbjct: 230 LYNVYERWCFNSGERALGNRSFYRMLETKGF-------GKTKGSKNRTFLTGITLNERKP 282
Query: 774 AFESVDDNSNIIDFK 788
+ V +N+ FK
Sbjct: 283 VTKGVTENNKNGKFK 297
>gi|167006280|ref|YP_001661503.1| hypothetical protein pSHK1.14 [Streptomyces sp. HK1]
gi|115394141|gb|ABI97026.1| unknown [Streptomyces sp. HK1]
gi|166162362|gb|ABY83483.1| hypothetical protein pSHK1.14 [Streptomyces sp. HK1]
Length = 517
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 82/333 (24%), Positives = 149/333 (44%), Gaps = 15/333 (4%)
Query: 379 NSKSPRFWFN----TDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDG 434
++ PR F+ +RR+++ S K+ +A S+ D+LD + L G
Sbjct: 106 SATDPRGVFSEREIAQHRRRSMS-TSGMKALLHQAKAAPALSLDPDVLDGDAYSLCTPAG 164
Query: 435 ILDLETGQ--KVKPTKELYITKSTGTPFVEGEPS-QEFLDLVSGY-FESEEVMDYFTRCV 490
++DL G+ K P ++L+ + P P FLD G + E+ D+ +
Sbjct: 165 VVDLRNGRLHKPDPLRDLHSRATNVAPQAMPTPRWHAFLDDTFGDDAKGREMTDFLHLLL 224
Query: 491 GMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKAN 550
G ++ G AQ + G G +GKS L++++ G+ Y A +M + +
Sbjct: 225 GYSITGDVGAQVLPFLWGKGANGKSVLLDVMIQVMGD-YADAAPPGFLMDKG--NFAEHS 281
Query: 551 PSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVP 610
L L G RI + SE ND+ + A++K +TGGD + AR + +S +P + +++
Sbjct: 282 TELTELHGRRIFVCSELKPNDKFDEARVKLLTGGDKIKARRMRQDYFSFTP-THKLWLLG 340
Query: 611 NKHLFVRNPDDAWWRRYIVIPFDK-PIANRDA-SFAQKLETKYTLEAKKWFLKGVKAYIS 668
N V A+WRR +IPF++ +A+R + A +L + W ++G Y++
Sbjct: 341 NHQPEVGTGGHAFWRRIRLIPFERVVVADRKIDNLAGELVQEEGPGILHWLIEGAIRYLT 400
Query: 669 KGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCC 701
+ P A D ++++CC
Sbjct: 401 SRDPLAGPSSVRLATAAYETTEDHIGRFLNECC 433
>gi|189043238|ref|YP_001936177.1| gp86 [Mycobacterium phage Adjutor]
gi|188090889|gb|ACD49671.1| gp86 [Mycobacterium phage Adjutor]
Length = 983
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 71/238 (29%), Positives = 110/238 (46%), Gaps = 20/238 (8%)
Query: 448 KELYITKSTGTPF------VEGE-PSQEFL------DLVSGYFESEEVMDYFTRCVGMAL 494
+E +T STGT + V GE QE L V Y EEV + + +G +L
Sbjct: 622 REDLLTLSTGTNYLPWQELVAGEFGKQEALYASTWARAVEMYLPDEEVRLFLQKLLGYSL 681
Query: 495 LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLI 554
LG N+ + + + G GSGKST +N A G+ Y + +R + NP+L
Sbjct: 682 LGDNRERIVVFLHGPTGSGKSTFLNATLNALGD-YADVVDLGIFKGDR-----QTNPALA 735
Query: 555 RLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHL 614
+ RIV SE ++ + ++A K++TGGD +TA L Y N + +F P+I N
Sbjct: 736 YALPKRIVTCSEASQRNVLHADMFKRITGGDPLTAELKYSNESVKRKPAFVPWIATNTPP 795
Query: 615 FVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAK-KWFLKGVKAYISKGL 671
+ D A R +V+ F++ I +D L + A W ++G Y +GL
Sbjct: 796 SIPGADAAVVDRTVVVGFNEQIRKQDVGMNAMLSSPRAKTAVLAWAVEGWGMYRREGL 853
>gi|209808767|gb|ACI88730.1| gp88 [Mycobacterium phage Troll4]
Length = 982
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 71/238 (29%), Positives = 110/238 (46%), Gaps = 20/238 (8%)
Query: 448 KELYITKSTGTPF------VEGE-PSQEFL------DLVSGYFESEEVMDYFTRCVGMAL 494
+E +T STGT + V GE QE L V Y EEV + + +G +L
Sbjct: 621 REDLLTLSTGTNYLPWQELVAGEFGKQEALYASTWARAVEMYLPDEEVRLFLQKLLGYSL 680
Query: 495 LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLI 554
LG N+ + + + G GSGKST +N A G+ Y + +R + NP+L
Sbjct: 681 LGDNRERIVVFLHGPTGSGKSTFLNATLNALGD-YADVVDLGIFKGDR-----QTNPALA 734
Query: 555 RLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHL 614
+ RIV SE ++ + ++A K++TGGD +TA L Y N + +F P+I N
Sbjct: 735 YALPKRIVTCSEASQRNVLHADMFKRITGGDPLTAELKYSNESVKRKPAFVPWIATNTPP 794
Query: 615 FVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAK-KWFLKGVKAYISKGL 671
+ D A R +V+ F++ I +D L + A W ++G Y +GL
Sbjct: 795 SIPGADAAVVDRTVVVGFNEQIRKQDVGMNAMLSSPRAKTAVLAWAVEGWGMYRREGL 852
>gi|206599705|ref|YP_002241584.1| gp86 [Mycobacterium phage Butterscotch]
gi|206282887|gb|ACI06374.1| gp86 [Mycobacterium phage Butterscotch]
Length = 983
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 71/238 (29%), Positives = 110/238 (46%), Gaps = 20/238 (8%)
Query: 448 KELYITKSTGTPF------VEGE-PSQEFL------DLVSGYFESEEVMDYFTRCVGMAL 494
+E +T STGT + V GE QE L V Y EEV + + +G +L
Sbjct: 622 REDLLTLSTGTNYLPWQELVAGEFGKQEALYASTWARAVEMYLPDEEVRLFLQKLLGYSL 681
Query: 495 LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLI 554
LG N+ + + + G GSGKST +N A G+ Y + +R + NP+L
Sbjct: 682 LGDNRERIVVFLHGPTGSGKSTFLNATLNALGD-YADVVDLGIFKGDR-----QTNPALA 735
Query: 555 RLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHL 614
+ RIV SE ++ + ++A K++TGGD +TA L Y N + +F P+I N
Sbjct: 736 YALPKRIVTCSEASQRNVLHADMFKRITGGDPLTAELKYSNESVKRKPAFVPWIATNTPP 795
Query: 615 FVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAK-KWFLKGVKAYISKGL 671
+ D A R +V+ F++ I +D L + A W ++G Y +GL
Sbjct: 796 SIPGADAAVVDRTVVVGFNEQIRKQDVGMNAMLSSPRAKTAVLAWAVEGWGMYRREGL 853
>gi|109522857|ref|YP_655277.1| gp81 [Mycobacterium phage PBI1]
gi|88910570|gb|ABD58497.1| gp81 [Mycobacterium phage PBI1]
Length = 983
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 71/238 (29%), Positives = 110/238 (46%), Gaps = 20/238 (8%)
Query: 448 KELYITKSTGTPF------VEGE-PSQEFL------DLVSGYFESEEVMDYFTRCVGMAL 494
+E +T STGT + V GE QE L V Y EEV + + +G +L
Sbjct: 622 REDLLTLSTGTNYLPWQELVAGEFGKQEALYASTWARAVEMYLPDEEVRLFLQKLLGYSL 681
Query: 495 LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLI 554
LG N+ + + + G GSGKST +N A G+ Y + +R + NP+L
Sbjct: 682 LGDNRERIVVFLHGPTGSGKSTFLNATLNALGD-YADVVDLGIFKGDR-----QTNPALA 735
Query: 555 RLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHL 614
+ RIV SE ++ + ++A K++TGGD +TA L Y N + +F P+I N
Sbjct: 736 YALPKRIVTCSEASQRNVLHADMFKRITGGDPLTAELKYSNESVKRKPAFVPWIATNTPP 795
Query: 615 FVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAK-KWFLKGVKAYISKGL 671
+ D A R +V+ F++ I +D L + A W ++G Y +GL
Sbjct: 796 SIPGADAAVVDRTVVVGFNEQIRKQDVGMNAMLSSPRAKTAVLAWAVEGWGMYRREGL 853
>gi|206599794|ref|YP_002241983.1| gp90 [Mycobacterium phage Gumball]
gi|206283008|gb|ACI06462.1| gp88 [Mycobacterium phage Gumball]
Length = 977
Score = 88.2 bits (217), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 71/238 (29%), Positives = 110/238 (46%), Gaps = 20/238 (8%)
Query: 448 KELYITKSTGTPF------VEGE-PSQEFL------DLVSGYFESEEVMDYFTRCVGMAL 494
+E +T STGT + V GE QE L V Y EEV + + +G +L
Sbjct: 616 REDLLTLSTGTNYLPWQELVAGEFGKQEALYASTWARAVEMYLPDEEVRLFLQKLLGYSL 675
Query: 495 LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLI 554
LG N+ + + + G GSGKST +N A G +Y + +R + NP+L
Sbjct: 676 LGDNRERIVVFLHGPTGSGKSTFLNATLNALG-EYADVVDLGIFKGDR-----QTNPALA 729
Query: 555 RLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHL 614
+ RIV SE ++ + ++A K++TGGD +TA L Y N + +F P+I N
Sbjct: 730 YALPKRIVTCSEASQRNVLHADMFKRITGGDPLTAELKYSNESVKRKPAFVPWIATNTPP 789
Query: 615 FVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAK-KWFLKGVKAYISKGL 671
+ D A R +V+ F++ I +D L + A W ++G Y +GL
Sbjct: 790 SIPGADAAVVDRTVVVGFNEQIRKQDVGMNAMLSSPRAKTAVLAWAVEGWGMYRREGL 847
>gi|260459539|ref|ZP_05807793.1| phage/plasmid primase, P4 family [Mesorhizobium opportunistum
WSM2075]
gi|259034341|gb|EEW35598.1| phage/plasmid primase, P4 family [Mesorhizobium opportunistum
WSM2075]
Length = 329
Score = 87.4 bits (215), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 64/228 (28%), Positives = 101/228 (44%), Gaps = 9/228 (3%)
Query: 482 VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQN 541
+ + R G L G Q + G G +GKST ++L+ + G+ Y + +
Sbjct: 17 IRAFLKRFCGYLLTGLTIEQVMLFFYGAGRNGKSTFVDLLCFIMGD-YAVTLSIDSFSGD 75
Query: 542 RPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESP 601
G+A P L RL G+R+V SE ++ A IK +TGG+ + R + + + P
Sbjct: 76 NKRGGGEATPDLARLPGARLVAASEPEAGVKLKDALIKTLTGGEKIPVRRLHKDFFEVDP 135
Query: 602 ASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAK---KW 658
F + N + + D WRR +++P+ IA D A L K EA W
Sbjct: 136 -HFKIVLSGNHKPRIDDDSDGIWRRLLLVPWTVQIAEGDTDRA--LPRKLRAEAGAVFAW 192
Query: 659 FLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGEN 706
++G Y++ GL +IPE A E RQ +D +I C + N
Sbjct: 193 MVEGAVDYLNHGL--EIPEGVRAASNEYRQESDAIGTFIRMACHVTGN 238
>gi|294633256|ref|ZP_06711815.1| DNA primase/helicase [Streptomyces sp. e14]
gi|292831037|gb|EFF89387.1| DNA primase/helicase [Streptomyces sp. e14]
Length = 502
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 80/338 (23%), Positives = 145/338 (42%), Gaps = 11/338 (3%)
Query: 391 YRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETG--QKVKPTK 448
+ ++ + K+ +A S+ D LD L G++DL G +K PT+
Sbjct: 117 HHKRRTLSTAGMKALLTQAKASPDLSVDPDDLDGDPYALCTPAGVVDLHNGHIRKADPTR 176
Query: 449 ELYITKSTGTPFVEGEPS-QEFL-DLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHI 506
+ + ++ P P FL D E E++D+ +G ++ G AQ +
Sbjct: 177 DFHSRATSVAPQRMETPRWHRFLADTFGDDAEGREMIDFLHLMLGYSITGDVGAQVLPFL 236
Query: 507 RGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISE 566
G G +GKS L++ + G+ Y A +M + + L L G R+V+ SE
Sbjct: 237 HGEGKNGKSVLLDTMIQILGD-YADAAPPGFLMDRG--AFSEHSTELTELHGRRLVVCSE 293
Query: 567 TNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRR 626
ND+ + A+++ +TGGD + AR + +S +P +++ N V A+WRR
Sbjct: 294 LKPNDKFDEARVRLLTGGDKIKARRMRQDYFSFTPTHHL-WLLGNHRPEVSTGGFAFWRR 352
Query: 627 YIVIPFDK--PIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKE 684
++PF + P R + A +L +W ++G + Y++ ++ P+ A
Sbjct: 353 IRLLPFTRTVPAERRIDNLAFELVRDEGPGILQWLIEGAQRYLATRDPLEGPDRVRIATS 412
Query: 685 EERQGTDTYQAWIDDCCDI-GENLWEESHSLAKSYSEY 721
D ++ +CC GEN + Y+EY
Sbjct: 413 AYASTEDHIGRFLAECCTRDGENARDLRVEQGLLYTEY 450
>gi|303247554|ref|ZP_07333825.1| phage/plasmid primase, P4 family [Desulfovibrio fructosovorans JJ]
gi|302491034|gb|EFL50928.1| phage/plasmid primase, P4 family [Desulfovibrio fructosovorans JJ]
Length = 524
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 67/266 (25%), Positives = 116/266 (43%), Gaps = 12/266 (4%)
Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540
++ +Y VG A+ G + + SGK+ L+ K FGN Y A+ +M+
Sbjct: 231 DMAEYLQHFVGYAITGIQRKAFALFYSKFSDSGKTLLLETFKSVFGN-YAGMLPAALLME 289
Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600
++ + P L L G R+ +SE+ + D N A++K ++GGD + AR + S
Sbjct: 290 DKKGKGLGPTPELAELQGLRLAFLSESGKADSFNVARLKWLSGGDTLVARGLFAKPVSFE 349
Query: 601 PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF-----DKPIANRDASFAQKLETKYTLEA 655
P T F+ N + +DA W R V F D P + L+ + E
Sbjct: 350 PMH-TLFLASNHLARIGIDEDALWGRIHVFKFPYAFKDNPAKPHERPINPDLKDQLRQEE 408
Query: 656 KK-----WFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEE 710
K W ++G A+ G + P +A E R D ++++ C IG+ E+
Sbjct: 409 VKSAILAWAVRGCLAWQKNGQKFNPPLSSREALETYRLNEDYVESFVRARCLIGKEHREQ 468
Query: 711 SHSLAKSYSEYREQELNYDRKRISTR 736
+ L ++YS++ +E + K + R
Sbjct: 469 AKPLHEAYSQWHVEEFGSNSKPLGRR 494
>gi|300933480|ref|ZP_07148736.1| phage-associated protein [Corynebacterium resistens DSM 45100]
Length = 754
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 93/383 (24%), Positives = 161/383 (42%), Gaps = 42/383 (10%)
Query: 410 EAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVK---PTKELYITKSTGTPFVEGEPS 466
EA + T + LD+ L G DL G + +L +++ P +G
Sbjct: 399 EARPMLLTTPEQLDADPYLLNTPSGTYDLRHGAASRRDHDPADLVTKQTSLDPGTDGAHL 458
Query: 467 -QEFLDLVSGYFESE-EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524
QE L++ +F+ + E++ Y R VG+A +G + + G +GKST N I
Sbjct: 459 WQEALEV---FFQGDAELIAYVQRIVGLAAIGQVFVEALVIAYEDGRNGKSTFWNTIARV 515
Query: 525 FGNQYVINAEASDI----MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQ 580
G Y N A + M+N PE +A G R++I +E+ E ++ + +KQ
Sbjct: 516 LGT-YAGNMSADVLTIGGMRNVKPELAEAK-------GKRLIISAESEEGVRMSTSVVKQ 567
Query: 581 MTGGDCMTARLNYGNTYSESPASFTP---FIVPNKHL-FVRNPDDAWWRRYIVIPFDKPI 636
+ D + A Y ++P +FTP I+ HL V D WRR IVIPF+ I
Sbjct: 568 LASTDQIYAEKKY-----KAPFAFTPSHTLILYTNHLPRVGAMDAGIWRRLIVIPFEAKI 622
Query: 637 --ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQ 694
A+ ++A L T+ W ++G + ++ + P ++A R+ + +
Sbjct: 623 EGASDIKNYADYLYTQAGGAILAWIMEGARLIHAEDYHLKAPARVVEASAAYREENNWFA 682
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
++D CD+ L E + L ++Y + + R + ++ GF
Sbjct: 683 QFLDANCDLDPGLSERAGDLYQAYRAWAMSTSGWARPMVD---FNATVEHHGF------- 732
Query: 755 KIEKEWKSKRIIKGLKLKPAFES 777
K + GL LK F++
Sbjct: 733 -TRKRTMHGMFVHGLALKNEFDN 754
>gi|315122492|ref|YP_004062981.1| P4 family phage/plasmid primase [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495894|gb|ADR52493.1| P4 family phage/plasmid primase [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 75
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 44/56 (78%), Positives = 46/56 (82%)
Query: 700 CCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755
+GE EES LAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGG + EK
Sbjct: 3 VARVGEGFLEESSILAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGREWEK 58
>gi|62860541|gb|AAY16511.1| putative primase [Gordonia terrae phage GTE5]
Length = 225
Score = 86.3 bits (212), Expect = 2e-14, Method: Composition-based stats.
Identities = 63/229 (27%), Positives = 108/229 (47%), Gaps = 18/229 (7%)
Query: 551 PSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVP 610
P +I R+V SE + + +++ IK++TGGD +TAR Y N + FTP I
Sbjct: 2 PEIIAAFPRRVVFASEVGQRNRLHSDVIKRLTGGDSVTARALYSNVMVQRTPMFTPIIAT 61
Query: 611 NKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAK-KWFLKGVKAYISK 669
N + + D A WRR +V+PFD+ + +A E L A W + G+ Y+ +
Sbjct: 62 NSMPTIEDGDAALWRRLLVLPFDRQVPLSNADVTPIREVPEALRAVLSWLVDGLLDYLLE 121
Query: 670 GLDVDIPEVCLKAKEEERQGTDTYQAW-----IDDCCDIGENLWEESHSLAKSYSEYREQ 724
GLD +P K + GT T+Q + DD D G+ + + L + +++ RE+
Sbjct: 122 GLDTALPTEVTKRRAMFIAGTSTFQMFTAEMLTDD--DDGKVVALKVFELYRQWAK-REE 178
Query: 725 ELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWK--SKRIIKGLKL 771
R+ +R +++ G+ K+ + + K S+ I G +L
Sbjct: 179 ADPLTRREFYSR-----MRENGY--ATKKATVRRAGKVTSETIFTGFRL 220
>gi|50843066|ref|YP_056293.1| phage-associated protein [Propionibacterium acnes KPA171202]
gi|50840668|gb|AAT83335.1| phage-associated protein [Propionibacterium acnes KPA171202]
gi|315106937|gb|EFT78913.1| phage/plasmid primase, P4 family protein [Propionibacterium acnes
HL030PA1]
Length = 752
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 93/381 (24%), Positives = 157/381 (41%), Gaps = 40/381 (10%)
Query: 410 EAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF 469
EA + T LD+ L G D+ G + ITK T +P+
Sbjct: 399 EAHPMLLTTPARLDADPYLLNTPGGTWDVRDGTRRDHNPLDLITKQTAL-----DPTDTG 453
Query: 470 LDL----VSGYFESE-EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524
++ ++ +F+S+ E++ Y R VG+A +G + + G G +GKST N I
Sbjct: 454 AEIWNRALNVFFQSDRELIGYVQRIVGLAAIGTVMVEALVIAYGDGRNGKSTFWNTIARV 513
Query: 525 FGNQYV--INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMT 582
G Y ++A+ I NR P L G R++I +E+ E ++ + +KQ+
Sbjct: 514 LGT-YAGNMSADVLTIGGNR-----NVKPELAEAKGKRLIIAAESEEGVRLSTSTVKQLA 567
Query: 583 GGDCMTARLNYGNTYSESPASFTP---FIVPNKHL-FVRNPDDAWWRRYIVIPFDKPIAN 638
D + A Y ++P +FTP I+ HL V D WRR IVIPF+ I +
Sbjct: 568 STDQIYAEKKY-----KAPFAFTPSHTLILYTNHLPRVGAMDAGIWRRLIVIPFNAVIES 622
Query: 639 RD--ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAW 696
++A L W ++G + ++ + P + A R+ + + +
Sbjct: 623 SSDVKNYADHLYETAGGAVLAWIMEGSRLIHAEDYQLTPPAQVVAASSAYREENNWFAQF 682
Query: 697 IDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKI 756
+D C++ +L E + L + Y + + + R L+Q GF +R K
Sbjct: 683 LDARCEVDPSLSERAGDLYQEYRAWAQSTSGWARPMAD---FNATLEQSGF----ERRKS 735
Query: 757 EKEWKSKRIIKGLKLKPAFES 777
K + GL L F S
Sbjct: 736 ----KHGMYVYGLALTSEFNS 752
>gi|24575081|gb|AAL06652.1| putative primase [Streptomyces globisporus]
Length = 509
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 72/317 (22%), Positives = 139/317 (43%), Gaps = 10/317 (3%)
Query: 391 YRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQ--KVKPTK 448
+ ++ + K+ +A S+ D LD L DG++DL G+ K PT+
Sbjct: 125 HHKRRTLSTTGMKALLTQAKASPDLSLDPDTLDGDPYALCTPDGVVDLRNGRMRKPDPTR 184
Query: 449 ELYITKSTGTPFVEGEPS-QEFL-DLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHI 506
+ + ++ +P P FL D E E++D+ +G ++ G AQ +
Sbjct: 185 DFHSRATSASPQDIPTPRWHRFLEDTFGSDAEGREMIDFLHLLLGYSITGDVGAQVLPFL 244
Query: 507 RGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISE 566
G G +GKS L++++ G+ +A + +R + + L L G R+++ SE
Sbjct: 245 HGQGKNGKSVLLDVMIQILGD--YADAAPPGFLMDRGAYSEHST-ELTELHGRRLIVCSE 301
Query: 567 TNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRR 626
ND + A+++ +TGGD + AR + +S +P + +++ N V A+WRR
Sbjct: 302 LKPNDRFDEARVRLLTGGDKIKARRMRQDYFSFTP-THKLWLLGNHRPEVSTGGFAFWRR 360
Query: 627 YIVIPFDK--PIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKE 684
++PF++ P + + A +L W +G + Y++ + P+ A
Sbjct: 361 IRLLPFERIVPDERKIDNLAVELVQDEGPGILHWLTEGARRYLATRDTLAGPDRVRIATS 420
Query: 685 EERQGTDTYQAWIDDCC 701
D ++ +CC
Sbjct: 421 AYANTEDHIGRFLAECC 437
>gi|303245321|ref|ZP_07331605.1| phage/plasmid primase, P4 family [Desulfovibrio fructosovorans JJ]
gi|302493170|gb|EFL53032.1| phage/plasmid primase, P4 family [Desulfovibrio fructosovorans JJ]
Length = 545
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 84/336 (25%), Positives = 154/336 (45%), Gaps = 44/336 (13%)
Query: 393 RQNVEENSKAKSTAQSLEAGSIFSITSD--LL------DSSSRFLGEQDGILDLETGQKV 444
R+NV++ + + +L F++++D LL D+ LG +G++DL TG+
Sbjct: 136 RKNVDDLREGSGVSAALR----FALSNDDPLLVRMEEFDADPYLLGVANGVVDLHTGEFR 191
Query: 445 KPTKELYITKSTGTPF------VEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGN 498
K + ++ G + V PS F+ + G + EV + R G A+ G +
Sbjct: 192 KARPGDRVRRTCGVEWQGIDAPVPLWPS--FVQEIVG--DDPEVAAFLQRVFGYAITGLS 247
Query: 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM-QNRPPEAGKANPSLIRLM 557
F+ + G G +GK+ ++ + G+ Y+ A ++ Q + +A K P+++ L
Sbjct: 248 CEPLFVVLAGDGRNGKTVMVETLGKVLGD-YMAPIPAELLLDQGQARDADKPTPTIMSLN 306
Query: 558 GSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP----FIVPNKH 613
G RI +E++EN + A++K ++G D +T R + P+SF P F++ N
Sbjct: 307 GLRIAYATESDENRRFSIARVKWLSGDDRLTGRY----MWDRDPSSFYPTHTLFLLTNHK 362
Query: 614 LFVRNPDDAWWRRYIVIPF-----DKPI----ANRDASFAQKLETKYTLEAKKWFLKGVK 664
+ A+W R ++ F DKP RD + ++LE K W ++G
Sbjct: 363 PHAGAHEYAFWDRLRLVNFPYRYVDKPTREHERQRDRTIPERLE-KELPGILAWLVRGCL 421
Query: 665 AYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDC 700
+ G + P L A EE ++ D Q ++D+C
Sbjct: 422 LWQRDG--IAPPASVLAATEEYQREEDHVQDFVDEC 455
>gi|313633608|gb|EFS00380.1| gp60 [Listeria seeligeri FSL N1-067]
Length = 217
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 55/173 (31%), Positives = 86/173 (49%), Gaps = 9/173 (5%)
Query: 553 LIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612
+ RL G+R V +E NE ++ +KQ+TGGD +TAR Y + + +P F ++ N
Sbjct: 2 IARLHGARFVTTTEPNEGVRLDEGLVKQLTGGDKVTARHLYKDEFEFTP-EFKIWMATNH 60
Query: 613 HLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAKKWFLKGVKAYISKG 670
+R DD WRR ++PF I + D KL ++ T W ++G + +G
Sbjct: 61 KPIIRGRDDGIWRRLHLVPFTVKIPDEKVDKQLKYKLRSELT-GILNWAVEGFLKWQREG 119
Query: 671 LDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYRE 723
L +P+V A E + D A+I+DCCD+ E E + K Y YR+
Sbjct: 120 L--GMPKVVENASSEYKXXXDVITAFIEDCCDVREG---EKVNAKKMYETYRD 167
>gi|301057712|ref|ZP_07198785.1| phage/plasmid primase, P4 family, C-terminal domain protein [delta
proteobacterium NaphS2]
gi|300448173|gb|EFK11865.1| phage/plasmid primase, P4 family, C-terminal domain protein [delta
proteobacterium NaphS2]
Length = 489
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 80/338 (23%), Positives = 141/338 (41%), Gaps = 26/338 (7%)
Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ-EFLDLV 473
++ D LD L DG++DLETG+ + IT + T + S F +
Sbjct: 134 LQVSGDALDLHPMRLACTDGVIDLETGELRPGRPQDLITLGSPTNWHGLHASAPNFERTI 193
Query: 474 SGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
+ + EV ++ R G G + + G G +GK+ L+ + + G + +
Sbjct: 194 NEIVDDPEVSEFLQRFFGYCCTGLVTESALVVLEGQGRNGKTLLVETLAHVLGP--LAGS 251
Query: 534 EASDIM--QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARL 591
S+++ Q R A PSL+ L G R SE EN +++++K ++G D + R
Sbjct: 252 IPSEMLLDQGRFTNADSPTPSLMSLRGLRCAFASEVEENRRFSSSRVKWLSGSDSLVGRF 311
Query: 592 NYGNTYSESPASFTP----FIVPNKHLFVRNPDDAWWRRYIVIPF------DKPIANRDA 641
+ P F P ++ N+ D A+W R ++PF +P A +
Sbjct: 312 ----PHDRRPTRFRPTHKLILLINERPNAPMNDYAFWERLHMVPFPFSFVDHEPKAANER 367
Query: 642 SFAQKLETKYTLEAK---KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID 698
+ L K EA W ++G + +GL PE K EE ++ D + ++D
Sbjct: 368 RADKSLAEKLKEEAPGILAWLVRGCLKWQKQGLSP--PEKIRKNTEEYKRSEDLLETFLD 425
Query: 699 DCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTR 736
+ C + E S L ++ + + N RK +S +
Sbjct: 426 EHCILDPKEEEASADLYDAFKSWWSE--NVSRKTLSQK 461
>gi|91214217|ref|NP_919008.2| DR0530-like primase [Burkholderia phage BcepNazgul]
gi|88604910|gb|AAQ63375.2| DR0530-like primase [Burkholderia phage BcepNazgul]
Length = 843
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 72/310 (23%), Positives = 130/310 (41%), Gaps = 38/310 (12%)
Query: 14 IHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGF------------VCGVG 61
I NG+ ++P+ G+K P G W++ + + K+ A G + + GVG
Sbjct: 18 IANGYNIVPITPGEKFPPHDG-WQQTVATQAKLKTWLATGLKYTKNGEDRVADVKLAGVG 76
Query: 62 --EQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTT 119
+ DID DE A ++ G VR+G+ P+ L+ FR + K +
Sbjct: 77 FLTKNTPGVDIDISDEGFAKHMENFVHENFGMAPVRVGRAPRRLLLFRCTEPFSKVNSSV 136
Query: 120 ESTQ----GHLDILGCGQYFVAYNIHPKTKKEYTWT--TPPHRFKVEDTPLLSEEDVEYL 173
+ ++IL GQ FVA++IHP TK+ Y W P + + P+L D + +
Sbjct: 137 YLDEWGEAQKVEILANGQQFVAFHIHPDTKRPYEWLYKQSPLDIEASELPVLRRVDAQAI 196
Query: 174 FKFFQ---EITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNG------ 224
F+ ++ +K + P ++ + + GE+ +
Sbjct: 197 VDEFEKQAKLRGWTLKKRSRTAPERSESGGEIDYDDPFAADVAKTDIGEDELHAKLLLVP 256
Query: 225 ---SHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTA 281
++ W+ V MA+ H+ G +G E+ WS+ YD + + KW +FD +
Sbjct: 257 DADDYETWVNVGMALFHQYDGHERGLELWHEWSETADNYDAKELDAKWKSFDI-----SN 311
Query: 282 KKRSTFTSLF 291
K R+ T+ +
Sbjct: 312 KSRTPITARY 321
>gi|254463719|ref|ZP_05077130.1| Primase C terminal 2 family [Rhodobacterales bacterium Y4I]
gi|206684627|gb|EDZ45109.1| Primase C terminal 2 family [Rhodobacterales bacterium Y4I]
Length = 890
Score = 84.7 bits (208), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 75/288 (26%), Positives = 127/288 (44%), Gaps = 41/288 (14%)
Query: 14 IHNGFKLIP-------LRLGDKRPQRLGKWEEQLLSSEKID-------KLPACGFGFVCG 59
+ G++ +P ++ KRP G WE S+++ + + G VCG
Sbjct: 41 LRGGYRPVPVLGAHVAMKAAGKRPMMKG-WETVCASADETEITRWTKAQRNCTNTGLVCG 99
Query: 60 VGEQPLYAFDIDSKDEKTAN--TFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKK 117
L DID D A+ TF T E+L +P+ RIG+ PKIL+ FR + K +
Sbjct: 100 ----DLIGVDIDVLDRDHAHRLTFIAT-EMLGMSPLSRIGRAPKILLAFRTDAP-FDKVQ 153
Query: 118 TTE-----STQGHLDILGCGQYFVAYNIHPKTKKEYTWT-TPPHRFKVEDTPLLSEEDVE 171
T+E T +++L GQ FV + IHP TK Y W P + + P++S++
Sbjct: 154 TSEFHMLDGTVARVEVLATGQQFVGFGIHPDTKAPYHWPECSPLDVSLHELPVVSQDRCA 213
Query: 172 YLFK----FFQEITVPLVKDKKSI-IPSKTWTNNNNRQYTNREIT--AFLSCFGEEFYNG 224
+F+++ D++ I + ++ +RE+ A +E
Sbjct: 214 AFISAAEGYFRKVGGQTTSDRREIDREGRKAAGLKQKEAPSRELIEEAVAHISNDEL--- 270
Query: 225 SHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTF 272
+D+WI V +A++ S G+++ WS + S D KWD+F
Sbjct: 271 PYDDWIKVGLALYAAL--GSDGRDLWETWSAEASKNDPAYSAEKWDSF 316
>gi|51870034|ref|YP_073585.1| predicted ATPase [Lymphocystis disease virus - isolate China]
gi|51858242|gb|AAU10926.1| predicted ATPase [Lymphocystis disease virus - isolate China]
Length = 865
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 88/338 (26%), Positives = 142/338 (42%), Gaps = 44/338 (13%)
Query: 422 LDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVE---------------GEPS 466
+DS + ++G+ D + E Y K ++ G
Sbjct: 497 IDSDPYLIAFKNGVFDFKQKTFRAGRPEDYCCKKLNVNYINYGFSGPLSCDPADFNGPEL 556
Query: 467 QEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFG 526
+E L F E+ +F R + A +GGN + + G G +GK+ LI+ FG
Sbjct: 557 KETLIFFQQVFPDVELRTFFIRQLASAFIGGNLEKICLFWTGSGNNGKTITQTLIEKMFG 616
Query: 527 NQYVINAEASDIMQNRPPEAGKANPSLIRLMGS-RIVIISETNENDEINAAKIKQMTGGD 585
+ + S ++ + G+ANP L R G R V++ E + ++ INA +K +TG D
Sbjct: 617 -VFAVKLSTS-VLTGKKLSTGQANPELARTGGGVRWVVMEEPDNDERINAGILKNLTGND 674
Query: 586 CMTARLNY--GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFD---KPIANRD 640
AR Y G E F ++ N ++ D A W R VIPF+ KP+
Sbjct: 675 TFWARDLYCAGKDTKEIIPMFKLHVICNNLPEIKYADQAVWNRVRVIPFESVFKPVEECP 734
Query: 641 ASFAQKLETKYTLEAKKWFLKGVK-----AY--ISKGLDVD-----IPEVCLKAKEEERQ 688
++ ++L+ K L K+ K K AY I L++D P LKA +E R
Sbjct: 735 ETYEERLKAKTFLVDVKFNEKLCKMTEPLAYYLIYYWLNMDRLNYNAPNKVLKATKEYRN 794
Query: 689 GTDTYQAWIDDCCDIGENLWEESHSLAKS---YSEYRE 723
D Y+ ++D+ NL ES ++ Y +Y+E
Sbjct: 795 ENDLYKQFVDN------NLITESGTILSDRLLYIKYKE 826
>gi|322510700|gb|ADX06014.1| putative VV D5 family helicase [Organic Lake phycodnavirus 1]
Length = 891
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 80/337 (23%), Positives = 152/337 (45%), Gaps = 34/337 (10%)
Query: 314 AMFSIYKKGHFLYTADTKAWYKKDKNNVYIW-----SLTL-DKITASIMN----FLVSMK 363
++ +YK+ + + WY+ D N W ++L K+++ I N F+ +++
Sbjct: 424 VLYQLYKESFVCVSIKSNIWYEFDDNR---WIENDSGISLRTKLSSEIYNLFFRFVKTLE 480
Query: 364 EDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLD 423
D E+ E+++K SK + T+ ++N+ K + + + + +LD
Sbjct: 481 RQTDDNEEKKENSSKFSKISKTLKTTN------DKNNIMKESKEIFYDSAFYK----MLD 530
Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFV------EGEPS--QEFLDLVSG 475
S +G ++G++D++ K YI +T + E P E + +
Sbjct: 531 SKPYLIGCRNGVVDVQNRLFRKGIHSDYIHNTTNNDYYPLEYYKEKSPDVIAEIDEFMYQ 590
Query: 476 YFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535
F E+ +Y + A++G N+ Q F GVG +GKS L+ L+ G+ Y +
Sbjct: 591 LFPETELREYMWEHLASAIIGTNQNQTFNIYLGVGANGKSKLVELMGKVLGD-YKGTVPS 649
Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595
+ I Q R G + + +L+G R ++ E ++ D IN +K++TGGD + R + +
Sbjct: 650 TLITQKRTS-IGNTSSEVHQLIGKRYAVMQELSKGDTINEGIMKEITGGDPIQCRALFKD 708
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF 632
+ + P F + N V++ DD WRR V F
Sbjct: 709 SVTFIP-QFKLVVCTNTLFDVKSNDDGTWRRIRVCEF 744
>gi|300023255|ref|YP_003755866.1| phage/plasmid primase, P4 family [Hyphomicrobium denitrificans ATCC
51888]
gi|299525076|gb|ADJ23545.1| phage/plasmid primase, P4 family [Hyphomicrobium denitrificans ATCC
51888]
Length = 401
Score = 84.3 bits (207), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 73/255 (28%), Positives = 113/255 (44%), Gaps = 17/255 (6%)
Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITK-STGTPFVEGEPSQEFLDLV 473
+ TSD D+ + L G++DL TG Y T+ +T P ++FL+ +
Sbjct: 151 LAATSDQWDADAWALNTPAGLVDLRTGILKPSLPSDYNTRLTTVAPGGSCPIFRDFLNRI 210
Query: 474 SGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN---QYV 530
+G +E+ + R G AL G + + G G +GKS L+ I G+ Q
Sbjct: 211 TG--GDKELQKFLQRAFGYALTGSVQEHALLFFYGTGANGKSVLLKTISDILGDYHQQAP 268
Query: 531 INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR 590
I + I Q E L L G+R+V ET E A+IK +TGGD ++AR
Sbjct: 269 IETFTASIHQRHETE-------LAALRGARLVTAVETEEGRRWAEARIKTLTGGDKISAR 321
Query: 591 LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK--PIANRDASFAQKLE 648
+ + P F I N +R D+A RR+ ++PF P A RD KL+
Sbjct: 322 FMRQDYFQFDP-QFKLVIAGNHKPGLRTVDEAIRRRFHLVPFAVTIPPAERDPDLTTKLQ 380
Query: 649 TKYTLEAKKWFLKGV 663
+++ KW ++G
Sbjct: 381 SEWP-GILKWMIEGC 394
>gi|115298601|ref|YP_762453.1| 94.9 kDa DNA primase/Poxvirus D5 family [Spodoptera frugiperda
ascovirus 1a]
gi|114416868|emb|CAL44699.1| 94.9 kDa DNA primase/Poxvirus D5 family [Spodoptera frugiperda
ascovirus 1a]
Length = 826
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 82/175 (46%), Gaps = 4/175 (2%)
Query: 471 DLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530
D + F EV +YF V G N ++++ GVG +GKS L+ + + G +
Sbjct: 506 DFLDSLFPDPEVREYFLLSVCQIFRGFNIFKQYVVWTGVGNNGKSVLIRMFECLLG-PLM 564
Query: 531 INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR 590
+ S ++ N+ + G NP + +L G R+ + E + +IN + K ++G AR
Sbjct: 565 VKLSKSVLVCNKM-DIGSVNPDMCKLQGVRLAVTDEIAGSADINVGQAKLLSGNGTFMAR 623
Query: 591 LNYGNTYSESP--ASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASF 643
Y + P A F P IV N +R PD+A W+R ++PFD N F
Sbjct: 624 DLYMKSSEMEPIRAQFIPIIVCNALPSLREPDEAAWKRIHIVPFDSYFTNEPDGF 678
>gi|56692689|ref|YP_164147.1| D5 family NTPase [Singapore grouper iridovirus]
gi|42517401|gb|AAS18067.1| D5 family NTPase [Singapore grouper iridovirus]
Length = 968
Score = 84.3 bits (207), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 76/172 (44%), Gaps = 5/172 (2%)
Query: 465 PSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524
P L S F E +F R +GGN + + G G +GK+ L +
Sbjct: 655 PVARLLTFFSTVFPDEGTRRFFLRNAAQTFIGGNPDKVCLFWTGTGNNGKTVTQTLFEKM 714
Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRL-MGSRIVIISETNENDEINAAKIKQMTG 583
G V ++ + R P AG ANP L RL G R ++ E N ++ INA +K MTG
Sbjct: 715 LGCFAV--KMSTQTLTGRKPSAGAANPELARLGCGVRWAVMEEPNSDETINAGTLKSMTG 772
Query: 584 GDCMTARLNY--GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFD 633
D AR Y G T E F ++ N +++ D A W R V+PF+
Sbjct: 773 NDSFFARDLYCAGKTTHEIKPLFKLHVICNTLPAIKDADQATWNRVRVVPFE 824
>gi|56418240|gb|AAV91054.1| D5 family NTPase [Grouper iridovirus]
Length = 966
Score = 84.0 bits (206), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 54/172 (31%), Positives = 76/172 (44%), Gaps = 5/172 (2%)
Query: 465 PSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524
P L S F E +F R +GGN + + G G +GK+ L +
Sbjct: 653 PVARLLAFFSTVFPDEGTRRFFLRNAAQTFIGGNPDKVCLFWTGTGNNGKTVTQTLFEKM 712
Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRL-MGSRIVIISETNENDEINAAKIKQMTG 583
G V ++ + R P AG ANP L RL G R ++ E N ++ INA +K MTG
Sbjct: 713 LGCFAV--KMSTQTLTGRKPSAGAANPELARLGCGVRWAVMEEPNSDETINAGTLKSMTG 770
Query: 584 GDCMTARLNY--GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFD 633
D AR Y G T E F ++ N +++ D A W R V+PF+
Sbjct: 771 NDSFFARDLYCAGKTTHEIKPLFKLHVICNTLPAIKDADQATWNRVRVVPFE 822
>gi|189916738|gb|ACE62877.1| phage-related protein FY0076 [Xylella fastidiosa]
gi|189916740|gb|ACE62878.1| phage-related protein FY0076 [Xylella fastidiosa]
Length = 293
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/239 (27%), Positives = 107/239 (44%), Gaps = 22/239 (9%)
Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538
S+ + + R G G + Q+F + G G +GKSTL++LI G + A
Sbjct: 21 SKPLCAFLQRWFGYCATGEVREQKFAVLYGDGNNGKSTLLDLITGILGRYSGVAAPGLLT 80
Query: 539 MQNRPPEAGKANPSLIR-LMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
+N P +P+ I L G R+V E+ E + + +KQ TGGD + AR YG +
Sbjct: 81 GKNGP-----QHPNAIADLAGRRMVTTHESGEGEVLREDFVKQATGGDTLKARYLYGEFF 135
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF--------DKPIAN----RDASFAQ 645
P + +K + ++ D WRR ++IPF + I N RD A+
Sbjct: 136 EFKPTHKLQLLTNHKPV-IKGQDSGIWRRIMLIPFKAKFDAAEGEEIGNGKYPRDMRIAE 194
Query: 646 KLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIG 704
KL + W + G + GL P++ L A E+ ++ D +ID+ C++G
Sbjct: 195 KLAAERE-GVLAWIVAGAVEWYKNGLRP--PDIVLAASEDYKEEQDRVGQFIDEECELG 250
>gi|189916734|gb|ACE62875.1| phage-related protein FY0076 [Xylella fastidiosa]
Length = 297
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 66/239 (27%), Positives = 107/239 (44%), Gaps = 22/239 (9%)
Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538
S+ + + R G G + Q+F + G G +GKSTL++LI G + A
Sbjct: 21 SKPLCAFLQRWFGYCATGEVREQKFAVLYGDGNNGKSTLLDLITGILGRYSGVAAPGLLT 80
Query: 539 MQNRPPEAGKANPSLIR-LMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
+N P +P+ I L G R+V E+ E + + +KQ TGGD + AR YG +
Sbjct: 81 GKNGP-----QHPNAIADLAGRRMVTTHESGEGEVLREDFVKQATGGDTLKARYLYGEFF 135
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF--------DKPIAN----RDASFAQ 645
P + +K + ++ D WRR ++IPF + I N RD A+
Sbjct: 136 EFKPTHKLQLLTNHKPV-IKGQDSGIWRRIMLIPFKAKFDAAEGEEIGNGKYPRDMRIAE 194
Query: 646 KLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIG 704
KL + W + G + GL P++ L A E+ ++ D +ID+ C++G
Sbjct: 195 KLAAERE-GVLAWIVAGAVEWYKNGLRP--PDIVLAASEDYKEEQDRVGQFIDEECELG 250
>gi|313813468|gb|EFS51182.1| phage/plasmid primase, P4 family protein [Propionibacterium acnes
HL025PA1]
Length = 752
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 92/381 (24%), Positives = 157/381 (41%), Gaps = 40/381 (10%)
Query: 410 EAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF 469
EA + T LD+ L G D+ G + ITK T +P+
Sbjct: 399 EAHPMLLTTPARLDADPYLLNTPGGTWDVRDGTRRDHNPLDLITKQTAL-----DPTDTG 453
Query: 470 LDL----VSGYFESE-EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524
++ ++ +F+S+ E++ Y R VG+A +G + + G G +GKST N I
Sbjct: 454 AEIWNRALNVFFQSDRELIGYVQRIVGLAAIGTVMVEALVIAYGDGRNGKSTFWNTIARV 513
Query: 525 FGNQYV--INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMT 582
G Y ++A+ I NR P L G +++I +E+ E ++ + +KQ+
Sbjct: 514 LGT-YAGNMSADVLTIGGNR-----NVKPELAEAKGKQLIIAAESEEGVRLSTSTVKQLA 567
Query: 583 GGDCMTARLNYGNTYSESPASFTP---FIVPNKHL-FVRNPDDAWWRRYIVIPFDKPIAN 638
D + A Y ++P +FTP I+ HL V D WRR IVIPF+ I +
Sbjct: 568 FTDQIYAEKKY-----KAPFAFTPSHTLILYTNHLPRVGAMDAGIWRRLIVIPFNAVIES 622
Query: 639 RD--ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAW 696
++A L W ++G + ++ + P + A R+ + + +
Sbjct: 623 SSDVKNYADHLYETAGGAVLAWIMEGSRLIHAEDYQLAPPAQVVAASSAYREENNWFAQF 682
Query: 697 IDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKI 756
+D C++ +L E + L + Y + + + R L+Q GF +R K
Sbjct: 683 LDARCEVDPSLSERAGDLYQEYRAWAQSTSGWARPMAD---FNATLEQSGF----ERRKS 735
Query: 757 EKEWKSKRIIKGLKLKPAFES 777
K + GL L F S
Sbjct: 736 ----KHGMYVYGLALTSEFNS 752
>gi|296446071|ref|ZP_06888020.1| phage/plasmid primase, P4 family [Methylosinus trichosporium OB3b]
gi|296256430|gb|EFH03508.1| phage/plasmid primase, P4 family [Methylosinus trichosporium OB3b]
Length = 578
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 65/234 (27%), Positives = 102/234 (43%), Gaps = 31/234 (13%)
Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549
G+ L+G Q+ + G G +GKS + +I G Y ++ I+ AG+A
Sbjct: 286 AGLGLVG-TLLQKLMFHHGFGANGKSVFLAVISGVIGKSYGVSLPKETILGRGERGAGQA 344
Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609
+P ++RL G R V I E E++ + +K++TGGD M R N Y + TP +
Sbjct: 345 SPDIVRLFGKRFVRIDELKEDESLREDLVKRLTGGDEMAVR-NLFEGYFDFANRATPHMS 403
Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDKPIANR-----DASFAQKLETKYTLEAKKWFLKGVK 664
N + D+ WRR +V+ + I D A+ LE + + W L GV
Sbjct: 404 GNGFPKIDGTDNGIWRRMLVVHWSVTIPPEERREFDGFVAELLEERSGI--LNWLLDGVL 461
Query: 665 AYISKGLDVDIPEV--------------------CLKAKEEERQGTDT-YQAWI 697
Y+ GL + PE+ C++A E ER T YQA++
Sbjct: 462 DYLEHGLFI-APEIAAATSKYQEEMNPIGEFIKDCVEAHEGERVAASTAYQAYV 514
>gi|298249763|ref|ZP_06973567.1| phage/plasmid primase, P4 family [Ktedonobacter racemifer DSM
44963]
gi|297547767|gb|EFH81634.1| phage/plasmid primase, P4 family [Ktedonobacter racemifer DSM
44963]
Length = 480
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 81/339 (23%), Positives = 143/339 (42%), Gaps = 25/339 (7%)
Query: 422 LDSSSRFLGEQDGILDLETGQKV--KPTKEL-YITKSTGTPFVEGEPSQEFLDLV---SG 475
D++ L +G+++L TG P++ Y + P + + FL G
Sbjct: 116 FDNNPDLLNVANGVVELSTGDLAPHDPSQRFTYALATDYDPMADSSEWEAFLSQAVTPDG 175
Query: 476 YFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKST----LMNLIKYAFGNQYVI 531
E +E++++ + VG ++ G + +R ++ G SGK T LM L+ +
Sbjct: 176 QEEDKELLNFIQQAVGYSVTGHTREERLFYVYGPTRSGKGTFTESLMTLVPRPLSMEVDF 235
Query: 532 NAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARL 591
N + + N L + SR++ SE+N+ +N KIKQ+TGG+ + A
Sbjct: 236 NTFTA------RRDGNDQNFDLADMKPSRLIFASESNKYQSLNPGKIKQLTGGNWVQAAF 289
Query: 592 NYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF-DKPIANRDASFAQKLETK 650
+ +S P + ++ N + DDA W R +V+ F + D S +L+
Sbjct: 290 KHKQRFSYRP-QYAVWLSSNHKVMGDPEDDALWYRVLVVEFPNSHKGKEDTSLKARLKQP 348
Query: 651 YTLEA-KKWFLKGV-KAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLW 708
KW + G Y ++ L V PE A + R D WI+D + +
Sbjct: 349 EAQRGILKWVVDGAFNWYATERLQV--PEGVKLATQAHRDDLDNIALWINDEVIEEDGAF 406
Query: 709 EESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGF 747
S L +SY + E +K +R + L LK++G+
Sbjct: 407 ASSAELYQSYKPWCEDNGVEPKK---SRELGLALKKRGY 442
>gi|212702855|ref|ZP_03310983.1| hypothetical protein DESPIG_00887 [Desulfovibrio piger ATCC 29098]
gi|212673717|gb|EEB34200.1| hypothetical protein DESPIG_00887 [Desulfovibrio piger ATCC 29098]
Length = 542
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 85/376 (22%), Positives = 162/376 (43%), Gaps = 44/376 (11%)
Query: 413 SIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTK-ELYITKSTGTPFVEG--EPSQEF 469
S +I D +D L +G++DL TG+ ++P + + ++ KS+ + +G P +
Sbjct: 163 SPLAIAGDEIDRDPWSLPMANGVVDLRTGE-IRPGRPDDWLVKSSPVEW-QGIDAPCPHW 220
Query: 470 LDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528
V+ + E+ + R G + G + F+ + G G +GK + +I+ G Q
Sbjct: 221 EHFVTEIMGDDPEMAAFLQRVFGYGVTGLAREHIFLVLLGRGRNGKGIMTEVIQTVLGGQ 280
Query: 529 YVINAEASDIM------QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMT 582
A A + Q + A +P ++ L G RI SET+E + A++K +
Sbjct: 281 NATTALAGPVQSEMLLDQGKNRSAAGPSPDIMSLRGLRIAFASETDEGQRFSPARVKWFS 340
Query: 583 GGDCMTARLNYGNTYSESPASFTP----FIVPNKHLFVRNPDDAWWRRYIVIPFD----- 633
GG+ +T R + + SF P ++ N D A+W R +++ F
Sbjct: 341 GGETLTGRY----PHDKRNVSFAPTHLLALLTNHKPHAPASDFAFWERLLLVDFPLSFVD 396
Query: 634 -KPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKG------LDVDIPEVCLKAKEEE 686
KP + + L+ + E L G+ A++ +G + + P +A E
Sbjct: 397 RKPQNENERPMDKGLKDRLLQE-----LPGIAAWLVRGCLEWQRVGIAPPAKVREATSEY 451
Query: 687 RQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746
R+ D ++D+CCD+ + E S A S+ + + ++ +S + + QK
Sbjct: 452 RRDEDLLADFVDECCDLQQEGQPEIRSKA---SDLYDAFCAWFKRNVSAKK---TISQKA 505
Query: 747 FIGGIKREKIEKEWKS 762
F G + E+ ++E K
Sbjct: 506 F-GKMMLERFQRERKG 520
>gi|24575142|gb|AAL06713.1| putative primase/helicase-like protein [Streptomyces globisporus]
Length = 511
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 74/341 (21%), Positives = 147/341 (43%), Gaps = 12/341 (3%)
Query: 391 YRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETG--QKVKPTK 448
+RR+ + + +Q+ A + +++ LD+ L G++DL +G + P +
Sbjct: 128 HRRRALSTSGINALLSQARSAPGMV-LSAGALDADPYMLCTPAGVVDLRSGKLRAADPDR 186
Query: 449 ELYITKSTGTPFVEGEPSQEFL--DLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHI 506
+ + ++ P P + D E++ + +G +L G AQ +
Sbjct: 187 DFHSRSTSIGPRQMPTPRWDLFLTDTFGDDARGREMIRFLHLLLGYSLTGDVGAQVMPFL 246
Query: 507 RGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISE 566
G G +GKS L++++ G+ +A + RP E + L L G R+++ SE
Sbjct: 247 FGSGKNGKSVLLDVLIKLLGD--YADAAPPGFLMARPFEGHPTD--LAELHGRRVIVCSE 302
Query: 567 TNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRR 626
D + +++K +TGGD + AR + +S +P + +++ N V A+WRR
Sbjct: 303 VKPGDRFDESRVKLLTGGDRIKARRMRQDFFSFAP-THKLWLLGNHRPEVGTGGYAFWRR 361
Query: 627 YIVIPFDKPIANRDA--SFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKE 684
+IPFD+ ++++ + A L T+ W + G Y++ D+ PE A
Sbjct: 362 MRLIPFDRVVSDQQKIDNLADILVTEEGPGILNWLITGAHHYLNSPRDLTGPETVRIATT 421
Query: 685 EERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQE 725
+ D ++ + C + E L +Y+ + E
Sbjct: 422 AYAETEDHTGRFLTERCTFQPHHRVEQARLYHAYTAWSRHE 462
>gi|109287999|ref|YP_654693.1| hypothetical protein MIV121R [Invertebrate iridescent virus 3]
gi|123808611|sp|Q196T9|VF184_IIV3 RecName: Full=Putative helicase 121R
gi|106073622|gb|ABF82151.1| hypothetical protein MIV121R [Aedes taeniorhynchus iridescent
virus]
Length = 941
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 78/296 (26%), Positives = 133/296 (44%), Gaps = 23/296 (7%)
Query: 419 SDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEG--EPSQEFLDL---V 473
SDLLD + + ++G+ D ET K + Y++K+ + + + S+E L+L +
Sbjct: 559 SDLLDENPLLIAFKNGVFDFETLTFRKGLQSDYLSKTLNIRYDDTLTDDSEEVLELYNFL 618
Query: 474 SGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
S F E+V YF + GGN+ + + G G +GKS L + G + +
Sbjct: 619 SKIFPDEKVRAYFVDQICEVFRGGNRDKIAMFWTGNGNNGKSVTQRLFETMIGKKLAVKL 678
Query: 534 EASDIMQNRPPEAGKANPSLIRLMGS-RIVIISETNENDEINAAKIKQMTGGDCMTAR-- 590
S + + P G+ NP L RL G R + E + ++I + + +TGGD + R
Sbjct: 679 STSVLTERIQP--GQPNPQLTRLRGGIRWGVFDEWGKTEQILSGSLNVLTGGDSLPCRDL 736
Query: 591 LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETK 650
G+ S+ F + N+ +++ DA W R +IPF+ R+ ET+
Sbjct: 737 FQKGSDSSDFTPMFKLLCICNELPCLKDAVDATWDRIRIIPFESKFVAREKC----PETE 792
Query: 651 YTLEAKKWFL-------KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD 699
KK FL K +++ L + ++ K KE++R+ TYQ I D
Sbjct: 793 QEQREKKLFLCDTEITQKDRMESLARALGWYLVKI-FKEKEKKRRNG-TYQVTIPD 846
>gi|15078896|ref|NP_149647.1| 184R [Invertebrate iridescent virus 6]
gi|82013411|sp|O55768|VF184_IIV6 RecName: Full=Putative helicase 184R
gi|2738452|gb|AAB94479.1| 184R [Invertebrate iridescent virus 6]
Length = 971
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 73/277 (26%), Positives = 118/277 (42%), Gaps = 30/277 (10%)
Query: 419 SDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPF-----VEGEPSQEFLDLV 473
+D +D + + + +G+ DL + E YIT+ P+ +E + L+
Sbjct: 574 NDKMDQNKQLIAFTNGVYDLSLFTFRQGLPEDYITRQMTIPYDITLTMENPKVIKMLNFF 633
Query: 474 SGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
F EE+ +YF +GGN+ + G G +GKS +I+ FG V
Sbjct: 634 KKIFPDEELFEYFMLENCEMYIGGNRDKILQIWTGEGDNGKSVTNKIIENKFGKLSVKFP 693
Query: 534 EASDIMQNRPPEAGKANPSLIRLM-GSRIVIISETNENDEINAAKIKQMTGG-DCMTAR- 590
+ ++ PP+AG P L R G R ++ E ++ +NA IK +TGG D + AR
Sbjct: 694 KG--MVTGDPPKAGACFPELTRAQRGVRWAVVDEFAPDETVNAGVIKNLTGGIDNLYARD 751
Query: 591 -LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN----------- 638
G + F + N +RNPD+A W R VIPF+ +
Sbjct: 752 IQQKGKDVIDIDPFFKLIFICNTIPNIRNPDNATWNRIRVIPFESTFKDSIDDISLEEQK 811
Query: 639 ------RDASFAQKLETKYTLEAKKWFLKGVKAYISK 669
+D SF +K + EA W+L ++ +I K
Sbjct: 812 RDKIFLKDTSFCEKETIRELGEAFAWYL--IQVFIKK 846
>gi|189916736|gb|ACE62876.1| phage-related protein FY0076 [Xylella fastidiosa]
Length = 305
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 68/257 (26%), Positives = 111/257 (43%), Gaps = 26/257 (10%)
Query: 465 PSQEFLDLVSGYFESEE----VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNL 520
P+ E + + E + + R G G + Q+F + G G +GKSTL++L
Sbjct: 6 PAPELYHTCAHHLRRREAXKPLCAFLQRWFGYCATGEVREQKFAVLYGDGNNGKSTLLDL 65
Query: 521 IKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIR-LMGSRIVIISETNENDEINAAKIK 579
I G + A +N P +P+ I L G R+V E+ E + + +K
Sbjct: 66 ITGILGRYSGVAAPGLLTGKNGP-----QHPNAIADLAGRRMVTTHESGEGEVLREDFVK 120
Query: 580 QMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF------- 632
Q TGGD + AR YG + P + +K + ++ D WRR ++IPF
Sbjct: 121 QATGGDTLKARYLYGEFFEFKPTHKLQLLTNHKPV-IKGQDSGIWRRIMLIPFKAKFDAA 179
Query: 633 -DKPIAN----RDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEER 687
+ I N RD A+KL + W + G + GL P++ L A E+ +
Sbjct: 180 EGEEIGNGKYPRDMRIAEKLAAERE-GVLAWIVAGAVEWYKNGLRP--PDIVLAASEDYK 236
Query: 688 QGTDTYQAWIDDCCDIG 704
+ D +ID+ C++G
Sbjct: 237 EEQDRVGQFIDEECELG 253
>gi|313633561|gb|EFS00357.1| gp60 [Listeria seeligeri FSL N1-067]
Length = 217
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 84/173 (48%), Gaps = 9/173 (5%)
Query: 553 LIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612
+ RL G+R V +E N+ ++ +KQ+TGGD +TAR Y + + +P F ++ N
Sbjct: 2 IARLHGARFVTTTEPNDGVRLDEGLVKQLTGGDKVTARHLYKDEFEFTP-EFKIWMATNH 60
Query: 613 HLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAKKWFLKGVKAYISKG 670
+R DD WRR ++PF I + D KL ++ T W ++G + +G
Sbjct: 61 KPIIRGRDDGIWRRLHLVPFTVKIPDEKVDKQLKYKLRSELT-GILNWAVEGFLKWQREG 119
Query: 671 LDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYRE 723
L +P+ A E D A+I+DCCD+ E E + K Y YRE
Sbjct: 120 L--GMPKAVENASSEYXXXXDVITAFIEDCCDVREG---EKVNAKKMYETYRE 167
>gi|317125794|ref|YP_004099906.1| phage/plasmid primase, P4 family [Intrasporangium calvum DSM 43043]
gi|315589882|gb|ADU49179.1| phage/plasmid primase, P4 family [Intrasporangium calvum DSM 43043]
Length = 463
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 84/337 (24%), Positives = 145/337 (43%), Gaps = 15/337 (4%)
Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKEL-YITKSTGTPFVEGEPSQEFLDLV 473
F+ T +D+ L +G LDL T + ++P +TK T + S E+ +
Sbjct: 113 FAATVRDVDADPWLLNCANGTLDLRT-RALRPHDPSDRLTKVTTGAYDPEADSSEWHAFL 171
Query: 474 SGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN-QYVIN 532
+ ++ Y R +G ++ G + F + GVG +GK T I +A G+ +IN
Sbjct: 172 ASVLPDQDERAYLQRVIGQSVYGRVREHLFPVLIGVGANGKGTTYGAISHAMGDYASIIN 231
Query: 533 AEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLN 592
E + + G P ++ LMG+R+VI SET + +++ +K++TGGD +TAR
Sbjct: 232 PELLMVRER----GGVGGPEMMTLMGARLVIGSETEDGRKLDETLMKRLTGGDELTARRL 287
Query: 593 YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY--IVIPFDKPIANRDASFAQKLETK 650
Y S P S V N V+ D A WRR + P+ RD ++L
Sbjct: 288 YREPVSWRP-SHQLIYVTNHLPKVKGNDPATWRRIRVVPFDVVVPVMQRDPELPERLAL- 345
Query: 651 YTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEE 710
+ W + G Y G + P ++A + +D +I + C+ G+ +
Sbjct: 346 HADAILTWVIAGHFDYEDNG-GMREPASVVRATGAFQADSDAVARFIAEECETGDYVHVR 404
Query: 711 SHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGF 747
+ L Y +R ++ +S R L + G+
Sbjct: 405 TRDL---YGAWRRWAVSEGADEMSERAFAKELDRLGY 438
>gi|168026035|ref|XP_001765538.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683176|gb|EDQ69588.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 311
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 87/170 (51%), Gaps = 9/170 (5%)
Query: 466 SQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF 525
+ E LDL++ F +E++ YF R + L G N + F G G +GK+ +++L++ AF
Sbjct: 10 TNEVLDLLAKVFPNEDIRRYFMRFISSCLEGRNANKIFSIWSGSGDNGKTVMVSLVERAF 69
Query: 526 GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGD 585
G+ Y + S +M R ++ A P L L G I ++ E +E D++N +K++TG D
Sbjct: 70 GD-YAVKMPTSLLMGKR-VQSSAATPELAMLKGRLIALVQEPDEGDKLNLGVMKELTGND 127
Query: 586 CMTARLNYGNTYSES---PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF 632
+ R Y E P + ++ N+ L + D A W R V+PF
Sbjct: 128 SLYIR----GLYEEGAIIPQTAKFVLIANRILQMSTFDKAVWSRVRVMPF 173
>gi|168214579|ref|ZP_02640204.1| primase [Clostridium perfringens CPE str. F4969]
gi|170713981|gb|EDT26163.1| primase [Clostridium perfringens CPE str. F4969]
Length = 754
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 67/266 (25%), Positives = 116/266 (43%), Gaps = 32/266 (12%)
Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539
+E+++Y + VG +L G Q + G G +GKST + ++ G Y + +M
Sbjct: 471 QELINYVQKAVGYSLTGDMSEQCLFMLWGGGANGKSTFVKALEDIMGT-YAATIKGETLM 529
Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599
+ + + + L RL R+VI SE E N +K ++ G+ + R Y +
Sbjct: 530 EKNGQDGARGD--LARLTNKRVVIASELQEGQVFNEPLLKVLSAGETLPVRFMYQEEFML 587
Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDAS---FAQKLE-------- 648
P F +I+ NK V+ D WRR+ +IPF ++ + +KL+
Sbjct: 588 KP-KFKLWIMTNKKPKVKGNDHGIWRRWRMIPFKYKFTEKEKDPNFYEEKLKPELEGILL 646
Query: 649 ---TKYTL------EAKKWFLKGVKAYISKGLDVD-----IPEVCLKAKEEERQGTDTYQ 694
T Y + EA K ++ V+ Y +D+D I + C + E G+ Y
Sbjct: 647 WAITGYQMWKEQGFEAPKEVMEAVEDY---KMDMDQVARFIEDCCFIRDDAECTGSAMYD 703
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSE 720
+++ C + GEN +H LA+ E
Sbjct: 704 EYLNWCINEGENYKMTNHKLAQDLKE 729
>gi|327198749|emb|CCA61450.1| unnamed protein product [Diadromus pulchellus ascovirus 4a]
Length = 849
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 106/232 (45%), Gaps = 9/232 (3%)
Query: 421 LLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPS----QEFL-DLVSG 475
L + ++RF+ + + D+E + V + Y++ VE E S ++F+ D
Sbjct: 481 LFEQNTRFIAFNNCVFDIEEWKLVPANPDHYLSIKIHHDLVEWESSPQAAKQFVEDFFYK 540
Query: 476 YFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535
F +E+ +Y + G N ++F G G +GKS +NL++ FG + +
Sbjct: 541 IFPDDELREYCLDNFARIITGKNVYKQFQFWTGTGNNGKSVCINLMEAVFG-KMSMKTPK 599
Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR--LNY 593
S +M + + G A P RL +R+ II E ND ++ +IK ++G D +R
Sbjct: 600 SIVMGGQVKQGGAA-PETYRLKDARLGIIDEVTNNDYLDPGQIKGLSGNDTFYSRDLFQK 658
Query: 594 GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQ 645
E F P ++ N+ ++ PDDA W R +I F+ + SF +
Sbjct: 659 CKDIKEITPMFFPILITNETPIIKRPDDATWDRIRLIRFESKFKSDVVSFIK 710
>gi|15837307|ref|NP_297995.1| hypothetical protein XF0705 [Xylella fastidiosa 9a5c]
gi|9105589|gb|AAF83515.1|AE003913_11 phage-related protein [Xylella fastidiosa 9a5c]
Length = 845
Score = 82.0 bits (201), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 89/389 (22%), Positives = 155/389 (39%), Gaps = 38/389 (9%)
Query: 334 YKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR 393
+ D + + +L L KI I + + D +E N K + + W R
Sbjct: 400 WAHDTDAARLLTLKLSKI---IRGEVEQWRTKRADTEKEKSKNAKIAAALEAWGKKSEMR 456
Query: 394 QNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYIT 453
VE A +L A S+ + ++ LD+ L +G +DL TG E Y+T
Sbjct: 457 STVE-------AAMAL-AKSMLVVKAERLDTDPWLLNCANGTVDLRTGTLKAHRPEDYMT 508
Query: 454 KSTGTPFVEGEPSQEFLDLVSGYFESE-----EVMDYFTRCVGMALLGGNKAQRFIHIRG 508
+ + + F ++ E + D+ R G G + + + G
Sbjct: 509 RVVPVNYTPDAAAPVFRKTLARITCEEGQAQQPLSDFLQRWFGYCATGSVREHKLAVMYG 568
Query: 509 VGGSGKSTLMNLIKYAFGNQYVINAEA--SDIMQNRPPEAGKANPSLIRLMGSRIVIISE 566
+G +GKSTL++LI G + A D +R P + L+G R+V ++E
Sbjct: 569 MGRNGKSTLLDLISGVLGRYAGVAAPGLLMDAGHDRHPT------EIADLVGRRMVTVNE 622
Query: 567 TNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRR 626
T+E + +KQ TGGD + AR + + + P + ++ N ++ D W R
Sbjct: 623 TSEGGILREGFVKQATGGDMLKARYMRADFF-DFPPTHKLQLLTNHKPVIKGQDVGIWSR 681
Query: 627 YIVIPFDKPIANRD---ASFAQ-----KLETKYTLEAK---KWFLKGVKAYISKGLDVDI 675
++IPF+ + A AQ K+ K E + W + G + +GL
Sbjct: 682 LMLIPFEARFGTAEEVKAGVAQYPIDHKITEKLAAEREGVLAWLVAGAVEWYREGLTP-- 739
Query: 676 PEVCLKAKEEERQGTDTYQAWIDDCCDIG 704
P + A ++ + D +I D C +G
Sbjct: 740 PAIVRDASKDYQTEQDRIAQFIKDECVLG 768
>gi|71275566|ref|ZP_00651851.1| Phage/plasmid primase P4, C-terminal [Xylella fastidiosa Dixon]
gi|71163457|gb|EAO13174.1| Phage/plasmid primase P4, C-terminal [Xylella fastidiosa Dixon]
Length = 843
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 86/355 (24%), Positives = 146/355 (41%), Gaps = 35/355 (9%)
Query: 368 DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSR 427
D +E N K + + W R VE A +L A S+ + ++ LD+
Sbjct: 429 DTEKEKSKNAKIAAALEAWGKKSEMRSTVE-------AAMAL-AKSMLVVKAERLDTDPW 480
Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLD----LVSGYFES-EEV 482
L +G +DL TG E YIT+ F + EF+ + Y ES + +
Sbjct: 481 LLNCANGTVDLRTGTLKAHRPEDYITRVVPINFDPKATAPEFITTLARITCEYGESFKPL 540
Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA--SDIMQ 540
+ R G G + + + G+G +GKSTL++LI G+ + A D
Sbjct: 541 CAFLQRWFGYCATGSVREHKMAVMYGMGRNGKSTLLDLISGILGSYAGVAAPGLLMDGGH 600
Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600
+R P + L G R++ ++ET+E + +KQ TGGD + AR + +
Sbjct: 601 DRHPT------EIADLAGRRMMTVNETSEGGILREGFVKQATGGDSLKARHMRSDFFEFR 654
Query: 601 PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR---DASFAQ-----KLETKYT 652
P + +K + ++ D W R ++IPF +A AQ K+ K
Sbjct: 655 PTHKLQLLTNHKPV-IKGQDVGIWSRLMLIPFKARFGTAEEIEAGIAQYPIDHKITEKLA 713
Query: 653 LEAK---KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIG 704
E + W + G + GL+ PE+ A ++ + D +I++ C +G
Sbjct: 714 AEREGVLAWVVAGAVEWCKNGLNP--PEIVRNASKDYQTEQDRIAQFIEEECVLG 766
>gi|170751547|ref|YP_001757807.1| P4 family phage/plasmid primase [Methylobacterium radiotolerans JCM
2831]
gi|170658069|gb|ACB27124.1| phage/plasmid primase, P4 family [Methylobacterium radiotolerans
JCM 2831]
Length = 472
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 77/292 (26%), Positives = 132/292 (45%), Gaps = 11/292 (3%)
Query: 414 IFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLV 473
+F++T + D+ LG G +DL TG+ + + ITK T E +L +
Sbjct: 114 VFAVTIEGWDADPWLLGTPGGTVDLRTGKLREADRADRITKLTAVAPAETPECPTWLKFL 173
Query: 474 SGYFESEE-VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532
+ + + + + G L G Q G GG+GK L++++ + Y +N
Sbjct: 174 DDVTQGDAGYIRFLQQWAGYCLTGDTSEQALCFAYGGGGNGKGVLIHVLAGILAD-YAVN 232
Query: 533 AEASDIMQNRPPEAGKANPSLIR-LMGSRIVIISETNENDEINAAKIKQMTGGDCMTARL 591
A M+ +P+ I L G+R+V SET + + A+IKQ+TGGD M AR
Sbjct: 233 A----AMETFTAAKHDRHPTEIAALRGARLVTASETEQGRQWAEARIKQLTGGDTMRARY 288
Query: 592 NYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKY 651
+ + +P I+ N + + DDA RR+ ++PF A D +KL ++
Sbjct: 289 MRQDEFEFTPV-LKLLIIGNNKPGLSSVDDAARRRFNLLPFLFKPAVPDPQLEEKLRKEW 347
Query: 652 TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDI 703
+ +W ++G + + L PEV A +E + DT+ W+D C +
Sbjct: 348 P-QILRWMIEGCLDWQAHRLVR--PEVVKDATDEYFEQQDTFGQWLDARCIV 396
>gi|225018075|ref|ZP_03707267.1| hypothetical protein CLOSTMETH_02012 [Clostridium methylpentosum
DSM 5476]
gi|224949072|gb|EEG30281.1| hypothetical protein CLOSTMETH_02012 [Clostridium methylpentosum
DSM 5476]
Length = 775
Score = 81.6 bits (200), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 81/308 (26%), Positives = 133/308 (43%), Gaps = 15/308 (4%)
Query: 422 LDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE-SE 480
D + ++G L+LE + + ++K + FL + E +E
Sbjct: 424 FDRNPALFNCKNGTLNLENLKLLPHNPADMLSKQANVNYDPAASCPRFLQFIEEITEGNE 483
Query: 481 EVMDYFTRCVGMALLG-GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539
E + F + +G AL G N+ F+ + +GK TL + + FG+ Y + + I
Sbjct: 484 ERANMFQKALGYALQGDANEECFFLALGKKTRNGKGTLFDSVMNVFGS-YGAQMDFNTIA 542
Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599
+ + +A P L RL+G+RIVI +E ++ IN A +KQ+TG D +T R YG+T
Sbjct: 543 RGGVKDGSRATPDLARLIGTRIVISNEPDKGVAINEALLKQLTGNDDITCRPLYGDTIQF 602
Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAK- 656
PA F F+ N V + R ++PF + RD S ++ EAK
Sbjct: 603 KPA-FKLFVTANSKPSVSDDSLFASDRIKMLPFTQHFKEDQRDTSLKALFRSE---EAKS 658
Query: 657 ---KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHS 713
W L+G + Y +GL L A E R+ D ++DD D + +
Sbjct: 659 SILNWLLEGYRKYKEEGLRDTAEMKALAA--EYRKENDYVGMFLDDRFDRDAPRYTTVKA 716
Query: 714 LAKSYSEY 721
L Y+ +
Sbjct: 717 LRADYATW 724
>gi|82800076|gb|ABB92287.1| putative D5 family NTPase/ATPase [Tiger frog virus]
Length = 975
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 77/172 (44%), Gaps = 5/172 (2%)
Query: 465 PSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524
P + L + F E +F R +GGN + + G G +GK+ L +
Sbjct: 661 PVNKLLAFFASVFPDEGTRRFFLRNAAATFVGGNPDKVVLFWTGTGNNGKTVTQTLFEKM 720
Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGS-RIVIISETNENDEINAAKIKQMTG 583
G V ++ + R P AG ANP + RL G R ++ E N ++ INA +K MTG
Sbjct: 721 LGCFAV--KMSTQTLTGRKPSAGSANPEMARLGGGVRWAVMEEPNSDETINAGTLKSMTG 778
Query: 584 GDCMTARLNY--GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFD 633
D AR Y G T E F ++ N +++ D A W R V+PF+
Sbjct: 779 NDSFFARDLYCAGKTTFEIKPMFKLHVICNALPGIKDADQATWNRVRVVPFE 830
>gi|168057313|ref|XP_001780660.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162667928|gb|EDQ54546.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 585
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 90/175 (51%), Gaps = 6/175 (3%)
Query: 420 DLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFV----EGEPSQEFLDLVSG 475
+LLDS +G + G+ D + + + YIT ST PFV E + E L+L++
Sbjct: 257 ELLDSRRNVIGMKGGVYDFIEDRFRRMESDDYITLSTRIPFVPLDYNSEATNEVLNLLAK 316
Query: 476 YFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535
F +E++ YF R + L G N + F G G +GK+ +++L++ AFG+ Y I
Sbjct: 317 VFPNEDIRRYFMRFISSCLEGQNANKIFSIWSGSGDNGKTVMVSLVEGAFGD-YTIKMPT 375
Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR 590
S +M R ++ A L L I ++ E +E D++N +K++TG D + R
Sbjct: 376 SLLMGKR-VQSSAATLELAMLKERLIALVQEPDEGDKLNLGIMKELTGNDSLYIR 429
>gi|83309457|ref|YP_419721.1| hypothetical protein amb0358 [Magnetospirillum magneticum AMB-1]
gi|82944298|dbj|BAE49162.1| hypothetical protein [Magnetospirillum magneticum AMB-1]
Length = 757
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 70/298 (23%), Positives = 116/298 (38%), Gaps = 39/298 (13%)
Query: 14 IHNGFKLIPLRLGDKRPQRL--GKWEE------------QLLSSEKIDKLPACGFGFVCG 59
+ NG+ IP+ G K+P R G W + L+ E P G CG
Sbjct: 16 VDNGYPAIPIWPGTKKPGRFQAGAWCDYPAWTRHCDRPTTLIEVETWATWPDAAIGLACG 75
Query: 60 VGEQPLYAFDIDSKDEKTANTF-KDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKT 118
L DID D A+ + ++L TP++RIG+ PK L+ +R + K+
Sbjct: 76 T----LVGIDIDVLDPDIAHRLERLARDMLGDTPLLRIGKAPKRLLVYRADVPFSGPKR- 130
Query: 119 TESTQGHLDILGCGQYFVAYNIHPKTKKEYTWT-TPPHRFKVEDTPLLSEEDVEYLFKFF 177
L+IL G+ FVA+ IHP T + Y W P ++D P+++EE V
Sbjct: 131 -----APLEILAQGRQFVAFAIHPDTGQSYVWPEDSPLTVALDDLPVVTEESVRQWLDAA 185
Query: 178 QEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVH 237
+ ++ + PS + + + ++ T + + L+ + +D W+ + MA+
Sbjct: 186 IALLPDDLRPATLVSPSVSMPSTSPQRGTLAAVRSALAHIPNA--DLEYDSWVRIGMAMK 243
Query: 238 HETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHG 295
G + WS + W +F IG YHH
Sbjct: 244 GAI--GEDGASLFAAWSAMSAKDVPAATAKAWASFRPTTIG---------AGTLYHHA 290
>gi|225734507|gb|ACO25275.1| D5 family NTPase [Epizootic haematopoietic necrosis virus]
Length = 973
Score = 81.3 bits (199), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 77/172 (44%), Gaps = 5/172 (2%)
Query: 465 PSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524
P + L + F E +F R +GGN + + G G +GK+ L +
Sbjct: 659 PMAKLLAFFASVFPDEGTRRFFLRNAAATFVGGNPDKVVLFWTGTGNNGKTVTQTLFEKM 718
Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGS-RIVIISETNENDEINAAKIKQMTG 583
G V ++ + R P AG ANP + RL G R ++ E N ++ INA +K MTG
Sbjct: 719 LGCFAV--KMSTQTLTGRKPSAGSANPEMARLGGGVRWAVMEEPNSDETINAGTLKSMTG 776
Query: 584 GDCMTARLNY--GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFD 633
D AR Y G T E F ++ N +++ D A W R V+PF+
Sbjct: 777 NDSFFARDLYCAGKTTFEIKPMFKLHVICNALPGIKDADQATWNRVRVVPFE 828
>gi|84684071|ref|ZP_01011973.1| hypothetical protein 1099457000262_RB2654_16521 [Maritimibacter
alkaliphilus HTCC2654]
gi|84667824|gb|EAQ14292.1| hypothetical protein RB2654_16521 [Rhodobacterales bacterium
HTCC2654]
Length = 602
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 111/261 (42%), Gaps = 10/261 (3%)
Query: 444 VKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRF 503
V +E +TK + + F ++ ++ + R G+A+ Q
Sbjct: 238 VPHAREQRLTKIMPVEYDPDATAPGFEKFLTRVLPDPDIRAFLQRWFGVAMTA-EPLQNM 296
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVI 563
+ + G G +GKS L+++I G+ Y A + G A P LI L+GSR V
Sbjct: 297 VFLFGSGANGKSVLVDIISRVLGD-YGATARIESLTGTNRRGGGDATPDLIPLIGSRHVR 355
Query: 564 ISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAW 623
SE +E + IK+ TGG+ + R + + P F + N +R DD
Sbjct: 356 TSEPDEGMRLQEGLIKEWTGGEPILVRALHSDFIVVLP-KFKLTMSGNHKPDIRGTDDGI 414
Query: 624 WRRYIVIPFDK--PIANRDASFAQKL-ETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCL 680
WRR++++PF + P+A RD KL E + + +W + G+ + GL P+ +
Sbjct: 415 WRRFLMVPFTEQIPVAERDPHLVDKLWEERDGI--FQWLIVGLNQFQEIGLSP--PDAVV 470
Query: 681 KAKEEERQGTDTYQAWIDDCC 701
A E R D ++ C
Sbjct: 471 AATAEFRAEQDPVGDFLATCT 491
>gi|49237319|ref|YP_031600.1| putative D5 family NTPase/ATPase [Frog virus 3]
gi|47060137|gb|AAT09681.1| putative D5 family NTPase/ATPase [Frog virus 3]
Length = 973
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 77/172 (44%), Gaps = 5/172 (2%)
Query: 465 PSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524
P + L + F E +F R +GGN + + G G +GK+ L +
Sbjct: 659 PVTKLLAFFASVFPDEGTRRFFLRNAAATFVGGNPDKVVLFWTGTGNNGKTVTQTLFEKM 718
Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGS-RIVIISETNENDEINAAKIKQMTG 583
G V ++ + R P AG ANP + RL G R ++ E N ++ INA +K MTG
Sbjct: 719 LGCFAV--KMSTQTLTGRKPSAGSANPEMARLGGGVRWAVMEEPNSDETINAGTLKSMTG 776
Query: 584 GDCMTARLNY--GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFD 633
D AR Y G T E F ++ N +++ D A W R V+PF+
Sbjct: 777 NDSFFARDLYCAGKTTFEIKPMFKLHVICNALPGIKDADQATWNRVRVVPFE 828
>gi|228861234|ref|YP_002854256.1| putative D5 family NTPase/ATPase [Soft-shelled turtle iridovirus]
gi|194307514|gb|ACF42244.1| putative D5 family NTPase/ATPase [Soft-shelled turtle iridovirus]
Length = 975
Score = 80.9 bits (198), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 52/172 (30%), Positives = 77/172 (44%), Gaps = 5/172 (2%)
Query: 465 PSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524
P + L + F E +F R +GGN + + G G +GK+ L +
Sbjct: 661 PVTKLLAFFASVFPDEGTRRFFLRNAAATFVGGNPDKVVLFWTGTGNNGKTVTQTLFEKM 720
Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGS-RIVIISETNENDEINAAKIKQMTG 583
G V ++ + R P AG ANP + RL G R ++ E N ++ INA +K MTG
Sbjct: 721 LGCFAV--KMSTQTLTGRKPSAGSANPEMARLGGGVRWAVMEEPNSDETINAGTLKSMTG 778
Query: 584 GDCMTARLNY--GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFD 633
D AR Y G T E F ++ N +++ D A W R V+PF+
Sbjct: 779 NDSFFARDLYCAGKTTFEIKPMFKLHVICNALPGIKDADQATWNRVRVVPFE 830
>gi|168041210|ref|XP_001773085.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675632|gb|EDQ62125.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 378
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 59/201 (29%), Positives = 98/201 (48%), Gaps = 16/201 (7%)
Query: 420 DLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFV----EGEPSQEFLDLVSG 475
+LLDS +G + G+ + + + + YIT ST PFV E + E LDL++
Sbjct: 174 ELLDSRRDVIGMKGGVYNFTEDRFRRMELDDYITLSTKIPFVPLDYNSEATNEVLDLLAK 233
Query: 476 YFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535
F ++ + YF R + L G N + F G G + K+ +++L++ AFG+ Y I
Sbjct: 234 VFLNKNIRRYFMRFISSCLEGRNANKIFSIWSGSGDNRKTVMVSLVERAFGD-YAIKMPT 292
Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595
S +M R ++ A P L L G I ++ E +E D++N +K++TG + + R
Sbjct: 293 SLLMGKR-VQSSTATPQLAMLKGRLITLVQEPDEGDKLNLGVMKELTGNNSLYVR----G 347
Query: 596 TYSESPASFTPFIVPNKHLFV 616
Y E I+P K F+
Sbjct: 348 LYEEGT------IIPQKAKFI 362
>gi|170739471|ref|YP_001768126.1| hypothetical protein M446_1166 [Methylobacterium sp. 4-46]
gi|168193745|gb|ACA15692.1| phage/plasmid primase, P4 family [Methylobacterium sp. 4-46]
Length = 467
Score = 80.5 bits (197), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 79/287 (27%), Positives = 120/287 (41%), Gaps = 17/287 (5%)
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESE-E 481
D LG G +DL TG+ + IT++T + +FL + F + E
Sbjct: 122 DLDPYLLGTPGGTIDLRTGELRPALQSDMITRTTAVAPADTAECPQFLQFLDETFGGDTE 181
Query: 482 VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNL---IKYAFGNQYVINAEASDI 538
+ + + G L G QRF+ G GG+GK L+ I + + A +
Sbjct: 182 TVRFLQQWCGYCLTGDTTEQRFVFGEGKGGNGKGVLIGTALGILKDYATVVAMEALTAAK 241
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598
P E + L G R+V SET E A+IK +TGGD + AR + +
Sbjct: 242 HDRHPTE-------IAALRGKRLVTASETEGGREWAEARIKALTGGDRIKARFMRQDEFE 294
Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF--DKPIANRDASFAQKLETKYTLEAK 656
P F F++ N +RN D A RR IV+PF D P RD +KLE ++
Sbjct: 295 FLP-QFKLFVMGNNRPSLRNVDQAMRRRLIVVPFNNDVPKEKRDPDLPKKLEAEWP-GIL 352
Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDI 703
+W + G + + L P+ EE G D ++ + CD+
Sbjct: 353 RWMIDGCLDWQANRLIS--PKAVEDNTEEYFSGQDLLGQFLAEKCDL 397
>gi|15839095|ref|NP_299783.1| hypothetical protein XF2505 [Xylella fastidiosa 9a5c]
gi|9107708|gb|AAF85303.1|AE004058_4 phage-related protein [Xylella fastidiosa 9a5c]
Length = 819
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 88/389 (22%), Positives = 150/389 (38%), Gaps = 38/389 (9%)
Query: 334 YKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR 393
+ D + + +L L KI I + + D +E N K + + W R
Sbjct: 374 WAHDTDAARLLALKLSKI---IRGEVEQWRTKRADTEKEKSKNAKIAAALEAWGKRSEMR 430
Query: 394 QNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYIT 453
VE A A + ++ LD+ L +G +DL TG E Y+T
Sbjct: 431 STVE--------AMMALAKCMIAVKPKQLDTDPWLLNCANGTVDLRTGTLKAHRPEDYMT 482
Query: 454 KSTGTPFVEGEPSQEFLDLVSGYFESE-----EVMDYFTRCVGMALLGGNKAQRFIHIRG 508
+ + + F + E + D+ R G G + + + G
Sbjct: 483 RVVPVNYTPDAAAPVFRKTLERITCEEGQAQQPLSDFLQRWFGYCATGSVREHKLAVMYG 542
Query: 509 VGGSGKSTLMNLIKYAFGNQYVINAEA--SDIMQNRPPEAGKANPSLIRLMGSRIVIISE 566
+G +GKSTL++LI G + A D +R P + L+G R+V ++E
Sbjct: 543 MGRNGKSTLLDLISGILGRYAGVAAPGLLMDAGHDRHPT------EIADLVGRRMVTVNE 596
Query: 567 TNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRR 626
T+E + +KQ TGGD + AR + + P + +K + ++ D W R
Sbjct: 597 TSEGGLLREGFVKQATGGDMLKARYMRADFFDFQPTHKLQLLTNHKPV-IKGQDVGIWSR 655
Query: 627 YIVIPFDKPIANR---DASFAQ-----KLETKYTLEAK---KWFLKGVKAYISKGLDVDI 675
++IPF +A AQ K+ K E + W + G + +GL+
Sbjct: 656 LMLIPFKARFGTAEEVEAGIAQYPIDHKITEKLAAEREGVLAWLVAGAVEWYREGLNP-- 713
Query: 676 PEVCLKAKEEERQGTDTYQAWIDDCCDIG 704
PE+ A ++ + D +I D C +G
Sbjct: 714 PEIVRDASKDYQTEQDRVTQFISDECVLG 742
>gi|317485315|ref|ZP_07944195.1| phage/plasmid primase [Bilophila wadsworthia 3_1_6]
gi|316923441|gb|EFV44647.1| phage/plasmid primase [Bilophila wadsworthia 3_1_6]
Length = 563
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 70/297 (23%), Positives = 129/297 (43%), Gaps = 17/297 (5%)
Query: 422 LDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEG-----EPSQEFLDLVSGY 476
LD R L +G+++LETG+ + Y+ + T + G +P D +
Sbjct: 167 LDDKPRLLPCPNGVINLETGELEQGRPRDYLLTACETEYDPGLLDVEDPCPVANDFLLRS 226
Query: 477 FESE-EVMDYFTRCVGMALLGGNKAQRFIHIRGVGG-SGKSTLMNLIKYAFGNQYVINAE 534
+ + E++ + R +G L+ K F+ G G +GK TL+ LI G +
Sbjct: 227 MDGDKELVAFIWRLLGYGLIRERKDHIFMIFHGEHGRNGKDTLIKLITTTLGKALSGDVP 286
Query: 535 ASDIMQN-RPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593
++Q + +P ++RL G I I+E EN + AK+K+++GG +T R Y
Sbjct: 287 VEMLLQTPNVKNSSGPSPDVMRLRGMCIAWINEAEENQKFALAKLKKLSGGSYITGRSPY 346
Query: 594 GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKY 651
+ + P + N+ + D A+W+R +++ ++ N+ A Q+ KY
Sbjct: 347 SKEETSWKQTHLPIMTTNELPKAKADDAAFWQRALILKWNLSFVNKPDPAKPYQRQADKY 406
Query: 652 TLEAKKWFLKGVKAYISKGL-------DVDIPEVCLKAKEEERQGTDTYQAWIDDCC 701
E + KGV A + +G + +PE + E +R D ++ + C
Sbjct: 407 LDEKLEKERKGVLARMVRGAIEYLKYGGLQVPEKVYRWTESQRTNWDDLAQFLSEWC 463
>gi|303245368|ref|ZP_07331652.1| phage/plasmid primase, P4 family [Desulfovibrio fructosovorans JJ]
gi|302493217|gb|EFL53079.1| phage/plasmid primase, P4 family [Desulfovibrio fructosovorans JJ]
Length = 576
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 92/391 (23%), Positives = 166/391 (42%), Gaps = 32/391 (8%)
Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF-LDLV 473
+I+ D + L ++ ++DLE G+ + P Y K+ PFV+ F LD +
Sbjct: 183 LAISGDEWNQRPTLLPCKNCVVDLEKGKPLDPDPFQYFNKAAIAPFVDLHAEAPFFLDTI 242
Query: 474 S-GYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532
S ++++DYF VG A G F G + KS + ++ G+ +
Sbjct: 243 SKALCRDKQLIDYFDYMVGFAATGLQTKDFFCAYGPKGDNAKSVVFEWLRKVLGD-FAGT 301
Query: 533 AEASDIMQNR-PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM-TGGDCMTAR 590
+ I+ + A +PS+++L G R+ + SE ++ + AKIK + +GGD + AR
Sbjct: 302 IKVETILDEKFMRSADGPSPSMLKLRGLRMAVTSEADKKHQFAMAKIKSICSGGDRLEAR 361
Query: 591 -LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF-DKPIANRDAS------ 642
+N + +P T + N DDA+++R VIPF K IA +D
Sbjct: 362 GINAVDIIEFNP-ELTLIMHSNHIPKASGNDDAFYKRIKVIPFRAKFIAEKDGPEDPDHH 420
Query: 643 -FAQKLETKYTLEAKKWFLKGVKAYISK--------GLDVDIPEVCLKAKEEERQGTDTY 693
+ K ++ + G+ AYI + G P L ++ R D
Sbjct: 421 IYHAKSRSRIVDPTLTREMPGIMAYIVRCAVKALKAGDMPPAPPAVLIETDQYRTDQDIV 480
Query: 694 QAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRI-STRTVTLNLKQKGFIGGIK 752
++ +C D N E+ + ++ ++ +E K I S + +LKQ
Sbjct: 481 GQFLRECTDPDSNNQEQMKDIYFAFRKWCAEEQMMPPKAIWSQNALGKDLKQ-------- 532
Query: 753 REKIEKEWKSKRIIKGLKLKPAFESVDDNSN 783
R ++E+ + KGL++KP + + + N
Sbjct: 533 RNELERIPSNVTYYKGLRIKPQWRKQEGDIN 563
>gi|24575137|gb|AAL06708.1| putative primase/helicase [Streptomyces globisporus]
Length = 474
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 67/295 (22%), Positives = 132/295 (44%), Gaps = 12/295 (4%)
Query: 391 YRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETG--QKVKPTK 448
+RR+ + + +Q+ A + +++ LD+ L G++DL +G + P +
Sbjct: 142 HRRRALSTSGINALLSQARSAPGMV-LSAGALDADPYMLCTPAGVVDLRSGKLRAADPDR 200
Query: 449 ELYITKSTGTPFVEGEPSQEFL--DLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHI 506
+ + ++ P P + D E++ + +G +L G AQ +
Sbjct: 201 DFHSRSTSIGPRQMPTPRWDLFLTDTFGDDARGREMIRFLHLLLGYSLTGDVGAQVMPFL 260
Query: 507 RGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISE 566
G G +GKS L++++ G+ +A + RP E + L L G R+++ SE
Sbjct: 261 FGSGKNGKSVLLDVLIKLLGD--YADAAPPGFLMARPFEGHPTD--LAELHGRRVIVCSE 316
Query: 567 TNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRR 626
D + +++K +TGGD + AR + +S +P + +++ N V A+WRR
Sbjct: 317 VKPGDRFDESRVKLLTGGDRIKARRMRQDFFSFAP-THKLWLLGNHRPEVGTGGYAFWRR 375
Query: 627 YIVIPFDKPIANRDA--SFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVC 679
+IPFD+ ++++ + A L T+ W + G Y++ D+ PE
Sbjct: 376 MRLIPFDRVVSDQQKIDNLADILVTEEGPGILNWLITGAHHYLNSPRDLTGPETV 430
>gi|144898907|emb|CAM75771.1| primase [Magnetospirillum gryphiswaldense MSR-1]
Length = 757
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 66/281 (23%), Positives = 114/281 (40%), Gaps = 30/281 (10%)
Query: 14 IHNGFKLIPLRLGDKRPQRL--GKWEE------------QLLSSEKIDKLPACGFGFVCG 59
+ NG+ IP+ G K+P R G W + L+ E P G CG
Sbjct: 16 VDNGYPAIPIWPGSKKPGRFQAGAWCDYPAWTRHCDRPTTLIEVETWATWPDAAIGLACG 75
Query: 60 VGEQPLYAFDIDSKDEKTANTF-KDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKT 118
L DID D A+ + ++L TP++RIG+ PK L+ +R + K+
Sbjct: 76 T----LVGIDIDVLDPDIAHRLERLARDMLGDTPLLRIGKAPKRLLVYRADVPFSGPKRA 131
Query: 119 TESTQGHLDILGCGQYFVAYNIHPKTKKEYTWT-TPPHRFKVEDTPLLSEEDVEYLFKFF 177
L+IL G+ FVA+ IHP T + Y W P ++D P+++E+ V +
Sbjct: 132 P------LEILAHGRQFVAFAIHPDTGQPYVWPEDSPLTVALDDLPVVTEDSVRAWLEAA 185
Query: 178 QEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVH 237
+ ++ P+ + + + ++ T + + L+ + +D W+ + MAV
Sbjct: 186 IALLPTELRPATLESPAASMPSTSPQRGTLAAVRSALAHIPNADLD--YDSWVRIGMAVK 243
Query: 238 HETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIG 278
+G + WS + W +F IG
Sbjct: 244 GAI--GEEGASLFAAWSAMSAKDVPATTANAWASFRPTTIG 282
>gi|332186933|ref|ZP_08388674.1| phage/plasmid primase, P4 family, C-terminal domain protein
[Sphingomonas sp. S17]
gi|332012943|gb|EGI55007.1| phage/plasmid primase, P4 family, C-terminal domain protein
[Sphingomonas sp. S17]
Length = 947
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 69/214 (32%), Positives = 104/214 (48%), Gaps = 10/214 (4%)
Query: 491 GMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKAN 550
G++L G Q+ G G +GKST+++ G+ A + + Q R + G+A
Sbjct: 649 GLSLTGDISEQKLAFYHGKGRNGKSTMVDACSEVAGDYGGSVAIETFLDQGRGRKGGEAT 708
Query: 551 PSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR-LNYGNTYSESPASFTPFIV 609
P L RL G R + SE + ++ A IK +TGG+ + AR LN G +S P SF I
Sbjct: 709 PDLARLPGIRFLRTSEPEKGAKLAEALIKLITGGELIDARHLNKG-FFSFLP-SFKVTIS 766
Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAK---KWFLKGVKAY 666
N + DD WRR +++P+D IA D + L K E W LKG+ +
Sbjct: 767 GNHKPKITGHDDGIWRRVMLVPWDVQIAKED--IDRHLPEKLRKEKSGILNWMLKGLIDW 824
Query: 667 ISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDC 700
GL V+ PE L A + R+ +D ++D+C
Sbjct: 825 RMNGL-VE-PESVLAATAKYREQSDQLGRFLDEC 856
>gi|45686089|ref|YP_003852.1| D5 family NTPase [Ambystoma tigrinum virus]
gi|37722513|gb|AAP33258.1| D5 family NTPase [Ambystoma tigrinum stebbensi virus]
Length = 975
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 77/172 (44%), Gaps = 5/172 (2%)
Query: 465 PSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524
P + L + F E +F R +GGN + + G G +GK+ L +
Sbjct: 661 PVAKLLAFFASVFPDEGTRRFFLRNAAAIFVGGNPDKVVLFWTGTGNNGKTVTQTLFEKM 720
Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGS-RIVIISETNENDEINAAKIKQMTG 583
G V ++ + + P AG ANP + RL G R ++ E N ++ INA +K MTG
Sbjct: 721 LGCFAV--KMSTQTLTGKKPSAGSANPEMARLGGGVRWAVMEEPNSDETINAGTLKSMTG 778
Query: 584 GDCMTARLNY--GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFD 633
D AR Y G T E F ++ N +++ D A W R V+PF+
Sbjct: 779 NDSFFARDLYCAGKTTFEIKPMFKLHVICNALPGIKDADQATWNRVRVVPFE 830
>gi|218529937|ref|YP_002420753.1| hypothetical protein Mchl_1974 [Methylobacterium chloromethanicum
CM4]
gi|218522240|gb|ACK82825.1| phage/plasmid primase, P4 family [Methylobacterium chloromethanicum
CM4]
Length = 485
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 83/330 (25%), Positives = 142/330 (43%), Gaps = 21/330 (6%)
Query: 386 WFNTDYRRQNVEENSKAKSTAQSLE-AGSI---------FSITSDLLDSSSRFLGEQDGI 435
W R E++ + + A +E AG I ++T + D+ LG G
Sbjct: 90 WSRELIRELFAEKSDRTRYIASKVEFAGGIEKYCRHDPALAVTIEGWDADPWLLGTPGGT 149
Query: 436 LDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEE-VMDYFTRCVGMAL 494
+DL TG+ K +E +TK T E +L + + + + + + G L
Sbjct: 150 VDLRTGELRKAHREERVTKLTAVAPAEASGCPTWLRFLDDVTQGDAGYIRFLQQWAGYCL 209
Query: 495 LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLI 554
G Q G GG+GK L++++ + Y +NA M+ +P+ I
Sbjct: 210 TGDTSEQVLCFAFGGGGNGKGVLIHVLAGILKD-YAVNA----AMETFTASKHDRHPTEI 264
Query: 555 R-LMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKH 613
L G+R+V SET + + A+IKQ+TGGD M AR + + +P I+ N
Sbjct: 265 AALRGARLVTASETEQGRQWAEARIKQLTGGDTMRARYMRQDEFEFTPV-LKLLIIGNNK 323
Query: 614 LFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDV 673
+ N DDA RR+ ++PF A D +KL ++ +W ++G + + L
Sbjct: 324 PGLSNVDDAARRRFNLLPFLFKPAVPDPRLEEKLRAEWP-AILRWMIEGCLDWQANRLVR 382
Query: 674 DIPEVCLKAKEEERQGTDTYQAWIDDCCDI 703
P+V +E DT+ W+++ C +
Sbjct: 383 --PDVVKVVTDEYFSAQDTFSLWLEERCVV 410
>gi|307320179|ref|ZP_07599599.1| phage/plasmid primase, P4 family [Sinorhizobium meliloti AK83]
gi|306894225|gb|EFN24991.1| phage/plasmid primase, P4 family [Sinorhizobium meliloti AK83]
Length = 602
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 68/240 (28%), Positives = 106/240 (44%), Gaps = 32/240 (13%)
Query: 491 GMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKAN 550
G+ LLG F H G G +GKS M + G+ V S I + +G A+
Sbjct: 308 GLGLLGITVQYLFFHY-GDGANGKSVYMETLCRLLGDVAVTLPATSLIGEGG--SSGSAS 364
Query: 551 PSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVP 610
P L RL G R++ + E E +++ +K++TGG+ +TAR + + Y++ F +
Sbjct: 365 PDLARLHGRRLLRVKELPEGEDLRENLVKELTGGETITAR-DLFSGYTDFLPIFIAIMSG 423
Query: 611 NKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAK---KWFLKGVKAYI 667
N + + DD WRR VI + IA D +++ + + E W ++G ++
Sbjct: 424 NGYPRITGTDDGIWRRMAVIHWPNKIAKEDRREFEEIVSSFEPEHPGILNWLIEGAHIFL 483
Query: 668 SKGLDVDIPEVCLKAKEEER-----------------------QGTDTYQAWIDDCCDIG 704
+GL IPE KA +E R QG D YQA+ DD D G
Sbjct: 484 REGL--VIPEAVEKATQEYRDDMDRTAGFVGRCIERDANADPLQGKDLYQAYCDDTVDQG 541
>gi|28199007|ref|NP_779321.1| hypothetical protein PD1115 [Xylella fastidiosa Temecula1]
gi|28057105|gb|AAO28970.1| phage-related protein [Xylella fastidiosa Temecula1]
Length = 819
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 83/355 (23%), Positives = 143/355 (40%), Gaps = 35/355 (9%)
Query: 368 DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSR 427
D +E N K + + W R VE A +L A S+ + ++ LD+
Sbjct: 405 DTEKEKSKNAKIAAALEAWGKKSEMRSTVE-------AAMAL-AKSMLVVKAERLDTDPW 456
Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESE-----EV 482
L +G +DL TG E YIT+ + + F ++ E +
Sbjct: 457 LLNCANGTVDLRTGTLKAHRPEDYITRVVPVNYTPDAAAPVFKKTLARITCEEGQAQQPL 516
Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA--SDIMQ 540
D+ R G G + + + G+G +GKSTL++LI G+ + A D
Sbjct: 517 SDFLQRWFGYCATGSVREHKMAVMYGMGRNGKSTLLDLISGILGSYAGVAAPGLLMDGGH 576
Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600
+R P + L G R++ ++ET+E + +KQ TGGD + AR + +
Sbjct: 577 DRHPT------EIADLAGRRMMTVNETSEGGILREGFVKQATGGDSLKARHMRSDFFEFQ 630
Query: 601 PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR---DASFAQ-----KLETKYT 652
P + +K + ++ D W R ++IPF +A AQ K+ K
Sbjct: 631 PTHKLQLLTNHKPV-IKGQDVGIWSRLMLIPFKARFGTAEEIEAGAAQYPIDHKITEKLA 689
Query: 653 LEAK---KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIG 704
E + W + G + GL+ PE+ A ++ + D +I++ C +G
Sbjct: 690 AEREGVLAWLVAGAVEWCKNGLNP--PEIVRDASKDYQTEQDRIAQFIEEECVLG 742
>gi|182681722|ref|YP_001829882.1| P4 family phage/plasmid primase [Xylella fastidiosa M23]
gi|182631832|gb|ACB92608.1| phage/plasmid primase, P4 family [Xylella fastidiosa M23]
Length = 843
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 83/355 (23%), Positives = 143/355 (40%), Gaps = 35/355 (9%)
Query: 368 DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSR 427
D +E N K + + W R VE A +L A S+ + ++ LD+
Sbjct: 429 DTEKEKSKNAKIAAALEAWGKKSEMRSTVE-------AAMAL-AKSMLVVKAERLDTDPW 480
Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESE-----EV 482
L +G +DL TG E YIT+ + + F ++ E +
Sbjct: 481 LLNCANGTVDLRTGTLKAHRPEDYITRVVPVNYTPDAAAPVFKKTLARITCEEGQAQQPL 540
Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA--SDIMQ 540
D+ R G G + + + G+G +GKSTL++LI G+ + A D
Sbjct: 541 SDFLQRWFGYCATGSVREHKMAVMYGMGRNGKSTLLDLISGILGSYAGVAAPGLLMDGGH 600
Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600
+R P + L G R++ ++ET+E + +KQ TGGD + AR + +
Sbjct: 601 DRHPT------EIADLAGRRMMTVNETSEGGILREGFVKQATGGDSLKARHMRSDFFEFQ 654
Query: 601 PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR---DASFAQ-----KLETKYT 652
P + +K + ++ D W R ++IPF +A AQ K+ K
Sbjct: 655 PTHKLQLLTNHKPV-IKGQDVGIWSRLMLIPFKARFGTAEEIEAGAAQYPIDHKITEKLA 713
Query: 653 LEAK---KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIG 704
E + W + G + GL+ PE+ A ++ + D +I++ C +G
Sbjct: 714 AEREGVLAWLVAGAVEWCKNGLNP--PEIVRDASKDYQTEQDRIAQFIEEECVLG 766
>gi|310831484|ref|YP_003970127.1| putative VV D5-type primase/helicase [Cafeteria roenbergensis virus
BV-PW1]
gi|309386668|gb|ADO67528.1| putative VV D5-type primase/helicase [Cafeteria roenbergensis virus
BV-PW1]
Length = 877
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 72/271 (26%), Positives = 118/271 (43%), Gaps = 26/271 (9%)
Query: 422 LDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFES-- 479
LD +G +G+ DL+ G E Y+T +TG + + + E FE
Sbjct: 513 LDEKYDLIGFNNGVFDLKKGIFRNGHPEDYLTMTTGLDYQQLDTDSEEYIACMKLFEDIH 572
Query: 480 --EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
E +Y + G +K + G G +GKS L+KY G+ Y+++ +
Sbjct: 573 PDVETREYVYTLFSTFISGHHKEETLHLFNGCGSNGKSVTFELLKYCLGD-YIMSVPVTL 631
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
+ + R + A P L +L G R+ ++ E E ++++ +K++TG D +TAR +
Sbjct: 632 LTRKRAG-SENATPMLAQLKGKRLGVLQEPEEGEKLHVGLMKELTGNDEITARPMF---- 686
Query: 598 SESPASFTP---FIVPNKHL-FVRNPDDAWWRRYIVIP-----FDKP---IANR---DAS 642
ESP +F P F +P +L V D WRR VI DKP N+ D +
Sbjct: 687 -ESPITFKPQIKFAIPCNNLPEVPARDKGTWRRLRVIDHLMEFVDKPNQKYPNQKQIDRT 745
Query: 643 FAQKLETKYTLEAKKWFLKGVKAYISKGLDV 673
+KLE + + Y+ KG+ V
Sbjct: 746 LKEKLEGMAGQFMSFLIDRYINVYVKKGMKV 776
>gi|13358409|ref|NP_078717.1| D5 family NTPase involved in DNA replication [Lymphocystis disease
virus 1]
Length = 874
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 77/314 (24%), Positives = 131/314 (41%), Gaps = 41/314 (13%)
Query: 422 LDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ-------------- 467
+DS+ + Q+G+ D + + + Y +K +V+ SQ
Sbjct: 506 IDSNPYLMAFQNGVFDFKQKLFRQGRPDDYCSKKLTINYVDYGISQLLSCNPEDFINQGL 565
Query: 468 -EFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFG 526
E L + F E+ +F R + A +GGN + + G G +GK+ L++ FG
Sbjct: 566 KETLIFLEQVFPDIELRVFFIRQLASAFIGGNSEKICLFWTGSGNNGKTITQTLMEQMFG 625
Query: 527 NQYVINAEASDIMQNRPPEAGKANPSLIRLMGS-RIVIISETNENDEINAAKIKQMTGGD 585
+ + S I + P G+ANP L+R G R ++ E + ++ INA +K +TG D
Sbjct: 626 -PFAVKLNTSVITGKKLP-TGQANPELVRTGGGVRWAVMEEPDSDERINAGILKSLTGND 683
Query: 586 CMTARLNY--GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF----------- 632
AR Y G E F ++ N ++ D A W R VIPF
Sbjct: 684 TFWARDLYCTGKDTKEIIPMFKLHVICNNLPEIKYADQAVWNRVRVIPFESVFKLAEECP 743
Query: 633 -------DKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEE 685
++ I D F++KL +E ++L + + L+ + P L A +E
Sbjct: 744 DTYKERLNQKIFPVDLKFSEKLSK--LIEPLAYYLIYYWLNMDR-LNYNPPTKVLNATKE 800
Query: 686 ERQGTDTYQAWIDD 699
+ D Y+ +ID+
Sbjct: 801 YQNDNDIYKQFIDN 814
>gi|40807289|ref|NP_047955.2| gp9a [Streptomyces phage phiC31]
gi|40313246|emb|CAA07134.2| gp9a [Streptomyces phage phiC31]
Length = 805
Score = 78.2 bits (191), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 76/312 (24%), Positives = 136/312 (43%), Gaps = 16/312 (5%)
Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGT---PFVEGEPSQEFLDLV 473
+ ++ D+++ L +G++DL TG+ K +T S P + ++FL +
Sbjct: 446 VEAEEFDANAHLLSFANGVVDLRTGKLRAHDKGDMLTVSLPIEYDPNAQAPRWEQFLQEI 505
Query: 474 SGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
+ + +++ Y R VG + G Q F + G G +GKS + FG +
Sbjct: 506 --FPNNADLVGYMRRLVGYGITGNTSEQCFAVLWGKGANGKSVFTETLTDVFGR--ITKT 561
Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593
+++ G N L L GSR+V+ SE ++ A +K++TG D +TAR
Sbjct: 562 TPFATFEDKGNGGGIPN-DLAALRGSRLVMASEGESGKPMSEAVLKRVTGKDKVTARFLR 620
Query: 594 GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKY 651
++ +P +F + N ++ D+ WRR +IPF + A RD +KL +
Sbjct: 621 QEFFTFAP-TFLIMLATNHKPKFKSQDEGLWRRVKLIPFVRYFAPEERDYDLDRKLRAE- 678
Query: 652 TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEES 711
+ W ++G + + GL PE A E R +D + D ++
Sbjct: 679 SAGIVAWAVRGAVEWYANGL--GDPESISTATREYRATSDALAGFFPGVLDAADD--SAI 734
Query: 712 HSLAKSYSEYRE 723
S A +Y+ YR+
Sbjct: 735 VSGADAYNSYRD 746
>gi|61741085|gb|AAX54510.1| ATPase [Lymphocystis disease virus 1]
Length = 865
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 133/568 (23%), Positives = 219/568 (38%), Gaps = 89/568 (15%)
Query: 227 DEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKW----------------- 269
D W+ + + T GS KG I +SK+ Y+E+ W
Sbjct: 277 DIWLEIGFCMWQITEGSPKGYTIWTSFSKKSEKYNEDECFDLWYRQMRSNNFTMASLYWL 336
Query: 270 -DTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTA 328
++ E D + S +Y G + +A + + K H Y
Sbjct: 337 IKKYNSEGFADYVQLYECPPSKYYTDGSHVG---IAKIVHHHFGSEFKCVSIKNHIWYRY 393
Query: 329 DTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFN 388
D AW + V + L D A ++ L + V DL E E + K + +
Sbjct: 394 DGVAWLECHVG-VDLRRLISDS-KAPVLQTLDRQIKTVSDLLEGEETDEK-----YYQWQ 446
Query: 389 TDYRRQNVEENSKA--------KSTAQSLEAGSIFSITSDL---------LDSSSRFLGE 431
+ + +EE K KS + S+ +L +DS+ +
Sbjct: 447 EELAQLTLEELEKLMDRLLKIKKSLRMTQFKNSVMRECEELFFDPLFAQKIDSNPYLIAF 506
Query: 432 QDGILDLE--TGQKVKP----TKEL---YITKSTGTPF------VEGEPSQEFLDLVSGY 476
++GI D + T + +P K+L YI + G P G +E L
Sbjct: 507 KNGIFDFKQKTFRTGRPEDYCCKKLTINYIDYNFGGPLSCEPVNFNGSELKEILIFFQQV 566
Query: 477 FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEAS 536
F E+ +F R + A +G N + + G G +GK+ LI+ F + + + S
Sbjct: 567 FPDVEIRTFFIRQLASAFVGANSEKICLFWTGSGNNGKTVTQTLIEKMF-SIFAVKLNTS 625
Query: 537 DIMQNRPPEAGKANPSLIRLMGS-RIVIISETNENDEINAAKIKQMTGGDCMTARLNY-- 593
++ + G+ANP L R G R ++ E + ++ INA +K +TG D AR Y
Sbjct: 626 -VLTGKKLSLGQANPELSRTGGGVRWAVMEEPDNDERINAGILKNLTGNDTFWARDLYCA 684
Query: 594 GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFD---KPIANRDASFAQKLETK 650
G E F I+ N ++ D A W R V+PF+ KP ++ ++L K
Sbjct: 685 GKDTKEITPMFKLHIICNNLPEIKYADQAVWNRVRVVPFESVFKPWEECPETYNERLRLK 744
Query: 651 YTLEAKKWFLKGVK-----AY--ISKGLDVD-----IPEVCLKAKEEERQGTDTYQAWID 698
K+ K K AY I L++D P+ LKA ++ R D Y+ +ID
Sbjct: 745 TFPVDVKFNEKLCKMTEPLAYYLIYYWLNMDRLNYNPPDKVLKATKDYRNENDLYKQFID 804
Query: 699 DCCDIGENLWEESHSLAKS---YSEYRE 723
+ NL EE +++ Y +Y+E
Sbjct: 805 N------NLTEEKNTILSDRLLYIKYKE 826
>gi|71897551|ref|ZP_00679796.1| Phage/plasmid primase P4, C-terminal [Xylella fastidiosa Ann-1]
gi|71732454|gb|EAO34507.1| Phage/plasmid primase P4, C-terminal [Xylella fastidiosa Ann-1]
Length = 843
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 83/355 (23%), Positives = 142/355 (40%), Gaps = 35/355 (9%)
Query: 368 DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSR 427
D +E N K + + W R VE A +L A S+ + ++ LD+
Sbjct: 429 DTEKEKSKNAKIAAALEAWGKKSEMRSTVE-------AAMAL-AKSMLVVKAERLDTDPW 480
Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESE-----EV 482
L +G +DL TG E YIT+ + + F ++ E +
Sbjct: 481 LLNCTNGTVDLRTGTLKAHRPEDYITRVVPVNYTPDAAAPVFKKTLARITCEEGQAQQPL 540
Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA--SDIMQ 540
D+ R G G + + + G+G +GKSTL++LI G+ + A D
Sbjct: 541 SDFLQRWFGYCATGSVREHKLAVMYGMGRNGKSTLLDLISGILGSYAGVAAPGLLMDGGH 600
Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600
+R P + L G R++ ++ET+E + +KQ TGGD + AR + +
Sbjct: 601 DRHPT------EIADLAGRRMMTVNETSEGGILREGFVKQATGGDSLKARHMRSDFFEFQ 654
Query: 601 PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR---DASFAQ-----KLETKYT 652
P + +K + ++ D W R ++IPF+ +A AQ K+ K
Sbjct: 655 PTHKLQLLTNHKPV-IKGQDVGIWSRLMLIPFEARFGTAEEVEAGVAQYPIDHKITEKLA 713
Query: 653 LEAK---KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIG 704
E + W + G + GL+ P + A ++ + D +I D C +G
Sbjct: 714 AEREGVLAWVIAGAVEWYRDGLNP--PGIVRDASKDYQTEQDRVTQFIKDECVLG 766
>gi|298103519|ref|YP_003714761.1| gp11 [Streptomyces phage phiSASD1]
gi|293338460|gb|ADE43478.1| gp11 [Streptomyces phage phiSASD1]
Length = 834
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 87/374 (23%), Positives = 154/374 (41%), Gaps = 34/374 (9%)
Query: 422 LDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFES-E 480
DS L ++G +DL TG+ + KE +T G + ++ + F +
Sbjct: 481 FDSQPELLSFKNGTVDLRTGKIREHRKEDLLTYCLGLNYRPEASCPRWVSFLEEVFPNMP 540
Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540
E+ YF R VG G Q F + G G +GKS + + F DI +
Sbjct: 541 EMPSYFQRLVGYGTTGCTAEQCFAVLWGQGANGKSVATDTLTSIF----------RDITE 590
Query: 541 NRP------PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
P +G + L GSR V+ SE ++ A +K++TG D ++AR
Sbjct: 591 TTPFSTFEEKSSGGIPNDIAALRGSRFVMASEGESGKPMSEAVLKRVTGKDEISARFLRQ 650
Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYT 652
++ P +F + N R D+ WRR +IPF + A RD + +KL +
Sbjct: 651 EFFTFKP-TFLLMLATNFKPKFRGQDEGLWRRVKLIPFTRFFAPEERDHTLDRKLLAEAE 709
Query: 653 LEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESH 712
A W +KG + GL P+ + A ++ R+ +D + + + E +
Sbjct: 710 GIA-AWAVKGAMEWFQYGL--QDPQHIIDATKDYRRTSDALAGFFPGVLEFSDGANELTA 766
Query: 713 SLA-KSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRI-IKGLK 770
A ++Y+ + E E R+R + RT F+ + K++++ +K + + G++
Sbjct: 767 GQAYQAYTHWCEAEGLPARERWTRRT---------FLDAMAERKVQRKNTAKGVALVGVR 817
Query: 771 LKPAFESVDDNSNI 784
+ D I
Sbjct: 818 IAADHADAPDGPGI 831
>gi|170730309|ref|YP_001775742.1| hypothetical protein Xfasm12_1160 [Xylella fastidiosa M12]
gi|167965102|gb|ACA12112.1| phage-related protein [Xylella fastidiosa M12]
Length = 842
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 84/355 (23%), Positives = 142/355 (40%), Gaps = 35/355 (9%)
Query: 368 DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSR 427
D +E N K + + W R VE A +L A S+ + ++ LD+
Sbjct: 429 DTEKEKSKNAKIAAALEAWGKKSEMRSTVE-------AAMAL-AKSMLVVKAERLDTDPW 480
Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESE-----EV 482
L +G +DL TG E YIT+ F + EF+ ++ E +
Sbjct: 481 LLNCANGTVDLRTGTLKAHRPEDYITRVVPINFDPKATAPEFITTLARITCEEGQAQQPL 540
Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA--SDIMQ 540
D+ R G G + + + G+G +GKSTL++LI G+ + A D
Sbjct: 541 SDFLQRWFGYCATGSVREHKLAVMYGMGRNGKSTLLDLISGILGSYAGVAAPGLLMDGGH 600
Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600
+R P + L G R++ ++ET+E + +KQ TGGD + AR + +
Sbjct: 601 DRHPT------EIADLAGRRMMTVNETSEGGILREGFVKQATGGDSLKARHMRSDFFEFQ 654
Query: 601 PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR---DASFAQ-----KLETKYT 652
P + +K + ++ D W R ++I F +A AQ K+ K
Sbjct: 655 PTHKLQLLTNHKPV-IKGQDVGIWSRLMLISFKARFGTAEEIEAGAAQYPIDHKITEKLA 713
Query: 653 LEAK---KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIG 704
E + W + G + GL+ P + A ++ + D +I D C +G
Sbjct: 714 AEREGVLAWIVAGAVEWCKNGLNP--PGIVRDASKDYQTEQDRVTQFIKDECVLG 766
>gi|85703019|ref|ZP_01034123.1| hypothetical protein ROS217_19797 [Roseovarius sp. 217]
gi|85671947|gb|EAQ26804.1| hypothetical protein ROS217_19797 [Roseovarius sp. 217]
Length = 1012
Score = 77.0 bits (188), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 84/183 (45%), Gaps = 20/183 (10%)
Query: 4 MQWKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKID----KLPACGFGFVCG 59
+ ++ A++ + NG++ IP++ G K P L +W ++ +D + +CG G G
Sbjct: 30 ITFENAAERLLDNGYEPIPIKPGQKAPA-LNRWTSVVIDDAALDDWRGRYASCGIGLRTG 88
Query: 60 VGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTT 119
+ L DID D A+ + G +VR+G PK L+ +R K K
Sbjct: 89 L----LVGIDIDVLDPDRAHDVQALAVRRFGETLVRVGCWPKRLLIYRTEIPFAKMKS-- 142
Query: 120 ESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTT--PPHRFKVEDTPLLSEEDVEYLFKFF 177
G ++ILG GQ FVA+ IHP T + Y W P + D P++ ++ F
Sbjct: 143 ----GQVEILGQGQQFVAFGIHPGTGRPYAWPLGETPLDVALSDLPVIDHTEIA---AFL 195
Query: 178 QEI 180
EI
Sbjct: 196 AEI 198
>gi|85703049|ref|ZP_01034153.1| hypothetical protein ROS217_19947 [Roseovarius sp. 217]
gi|85671977|gb|EAQ26834.1| hypothetical protein ROS217_19947 [Roseovarius sp. 217]
Length = 791
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 84/183 (45%), Gaps = 20/183 (10%)
Query: 4 MQWKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKID----KLPACGFGFVCG 59
+ ++ A++ + NG++ IP++ G K P L +W ++ +D + +CG G G
Sbjct: 30 ITFENAAERLLDNGYEPIPIKPGQKAPA-LNRWTSVVIDDAALDDWRGRYASCGIGLRTG 88
Query: 60 VGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTT 119
+ L DID D A+ + G +VR+G PK L+ +R K K
Sbjct: 89 L----LVGIDIDVLDPDRAHDVQALAVRRFGETLVRVGCWPKRLLIYRTEIPFAKMKS-- 142
Query: 120 ESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTT--PPHRFKVEDTPLLSEEDVEYLFKFF 177
G ++ILG GQ FVA+ IHP T + Y W P + D P++ ++ F
Sbjct: 143 ----GQVEILGQGQQFVAFGIHPGTGRPYAWPLGETPLDVALSDLPVIDHTEIA---AFL 195
Query: 178 QEI 180
EI
Sbjct: 196 AEI 198
>gi|291536672|emb|CBL09784.1| phage/plasmid primase, P4 family, C-terminal domain [Roseburia
intestinalis M50/1]
Length = 769
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 85/322 (26%), Positives = 136/322 (42%), Gaps = 31/322 (9%)
Query: 410 EAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF 469
+A S++ I D + +L Q+G LDL+TG+ T + +TK G + + F
Sbjct: 406 DAQSVYPIAMSEFDCNVYYLNCQNGTLDLQTGEFHPHTPQDKLTKIAGAAYDPNAKNPRF 465
Query: 470 LDLVSGYFESE-EVMDYFTRCVGMALLGGNKAQ-RFIHIRGVGGSGKSTLMNLIKYAFGN 527
VS + E + + +G L G + + F + +GK TLM + G+
Sbjct: 466 TRFVSEVMSGDTEKARFMQKSLGYGLTGDTRYECMFFYYGATTRNGKGTLMESTLHVMGD 525
Query: 528 QYVINAEASDIMQNRPPEAGKANPS--LIRLMGSRIVIISETNENDEINAAKIKQMTGGD 585
Y + I P A NP+ + RL G R ISE +N A+IK MTG D
Sbjct: 526 -YGLTVRPETIAAK--PSANSQNPTEDIARLAGVRFANISEPRRGLVLNEAQIKSMTGND 582
Query: 586 CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI------ANR 639
+ AR + N++ P F ++ N + + R ++IPFD+ N
Sbjct: 583 TLNARFLHENSFDFKP-QFKLYVNTNYLPAITDMTLFSSGRVVIIPFDRHFEEWEQEQNL 641
Query: 640 DASFAQK---------LETKYTLEAKKWFL--KGVK-AYISKGLDVD-----IPEVCLKA 682
A F++ L YT+ ++ F K VK A +S D D + E +
Sbjct: 642 KAEFSRPEAASAILNWLIEGYTILKEEGFAQPKAVKDATMSYQHDSDKMELFVEEFLEQE 701
Query: 683 KEEERQGTDTYQAWIDDCCDIG 704
K+ E + + YQA+ + C D G
Sbjct: 702 KDAECRTSAVYQAYRNWCNDNG 723
>gi|325685155|gb|EGD27281.1| phage/plasmid primase [Lactobacillus delbrueckii subsp. lactis DSM
20072]
Length = 831
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 107/460 (23%), Positives = 188/460 (40%), Gaps = 45/460 (9%)
Query: 279 DTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYK--KGHFLYTADTKAWYKK 336
D ++ F FY+ + + A+RF+D Y K + K +Y +T +W
Sbjct: 331 DGVEREFPFNGYFYNRDYEMTEVGFANRFADWYAKGKLVYHPGLKAWLMYNPETGSWMPN 390
Query: 337 DKNNV-YIWSLTLDKITASIMNFLVSMKEDV---FDLSEEPEDNNKNSKSPRFWFNTDYR 392
+ + ++ T +K+ I N V++K++ + +P +K S + +N Y
Sbjct: 391 GDDRLGTTFNQTPEKL---IDNLRVNLKKEKRLWLTVGRDPHKPDKQSFGEKA-YNKGYE 446
Query: 393 RQNVEENSKAK-STAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETG--QKVKPTKE 449
R + KA AQS +T + L + G +DL+TG P K
Sbjct: 447 RISSAAGQKATLELAQS-------RLTVRAFNDCKTELNTRTGWIDLKTGAISPHSPAKL 499
Query: 450 LYITKSTGTP--FVEGEPSQEFLDLVSGYFESE-EVMDYFTRCVGMALLGGNKAQRFIHI 506
G P EG+ + + + F + E++DY C+G ++ G +
Sbjct: 500 FDKATDAGLPNKATEGDGGKLWDRFLKETFCGDLELIDYVQACIGYSVTGKINEEVMFIC 559
Query: 507 RGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA-NPSLIRLMGSRIVIIS 565
G GG+GKS + I G+ + + I N+ G A +P L L G R V+ +
Sbjct: 560 EGSGGNGKSIFLECINEVLGDYSSVIPIETLIDNNKAQRDGSAPSPDLASLKGKRFVMTT 619
Query: 566 ETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625
E + I+ +K +TGG + R+ + N P F + N + + + R
Sbjct: 620 EPKKQVTIDDGIVKTVTGGTKLNVRMLHQNPIVFLP-QFKIWWQSNGLPRIAIKEHSMLR 678
Query: 626 RYIVIPFDKPIANRDASFAQKLETKYTLEAK---KWFLKGVKAYISK-GLDVDIPEVCLK 681
R IVIPF + R + L++K E + KW ++GV + ++ G + P+
Sbjct: 679 RLIVIPFKNEV--RGDAVDINLKSKLMKEKEFILKWCIEGVAKWQARDGKALYHPKYQPA 736
Query: 682 AKEEERQG--------TDTYQAWIDDCCDIGENLWEESHS 713
A EE G D+ + W+++ +EE HS
Sbjct: 737 AVEEATAGLWNSAHVPVDSIKQWLEN------GNYEEGHS 770
>gi|331087335|ref|ZP_08336403.1| hypothetical protein HMPREF0987_02706 [Lachnospiraceae bacterium
9_1_43BFAA]
gi|330408361|gb|EGG87836.1| hypothetical protein HMPREF0987_02706 [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 769
Score = 75.9 bits (185), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 101/229 (44%), Gaps = 8/229 (3%)
Query: 410 EAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF 469
+A S++ I D + +L Q+G LDL+TG+ T + +TK G + S F
Sbjct: 406 DAQSVYPIAMSEFDRNIYYLNCQNGTLDLQTGEFHPHTPQDKLTKIAGAAYDPNAKSPRF 465
Query: 470 LDLVSGYFESE-EVMDYFTRCVGMALLGGNKAQ-RFIHIRGVGGSGKSTLMNLIKYAFGN 527
+ +S + E + + +G L G + + F + +GK TLM + G+
Sbjct: 466 IRFISEVMSGDKEKARFMQKSLGYGLTGDTRYECMFFYYGATTRNGKGTLMESTLHVMGD 525
Query: 528 QYVINAEASDIMQNRPPEAGKANPS--LIRLMGSRIVIISETNENDEINAAKIKQMTGGD 585
Y + I P A NP+ + RL G R ISE +N A+IK MTG D
Sbjct: 526 -YGLTVRPETIAAK--PSANSQNPTEDIARLAGIRFANISEPRRGLVLNEAQIKSMTGND 582
Query: 586 CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK 634
+ AR + N++ P F ++ N + + R ++IPFD+
Sbjct: 583 TLNARFLHENSFDFKP-QFKLYVNTNYLPAITDMTLFSSGRIVIIPFDR 630
>gi|163816182|ref|ZP_02207550.1| hypothetical protein COPEUT_02366 [Coprococcus eutactus ATCC 27759]
gi|158448602|gb|EDP25597.1| hypothetical protein COPEUT_02366 [Coprococcus eutactus ATCC 27759]
Length = 769
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 88/324 (27%), Positives = 137/324 (42%), Gaps = 35/324 (10%)
Query: 410 EAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF 469
+A S++ I D + +L Q+G LDL+TG+ T + +TK G + + F
Sbjct: 406 DAQSVYPIAMSEFDRNIYYLNCQNGTLDLQTGEFHPHTPQDKLTKIAGAAYDPKTKNPRF 465
Query: 470 LDLVSGYFESEEVMD---YFTRCVGMALLGGNKAQ-RFIHIRGVGGSGKSTLMNLIKYAF 525
VS + MD + + +G L G + + F + +GK TLM +
Sbjct: 466 TRFVSEVMSGD--MDKAKFMQKSLGYGLTGDTRYECMFFYYGATTRNGKGTLMESTLHVM 523
Query: 526 GNQYVINAEASDIMQNRPPEAGKANPS--LIRLMGSRIVIISETNENDEINAAKIKQMTG 583
G+ Y + I P A NP+ + RL G R ISE +N A+IK MTG
Sbjct: 524 GD-YGLTVRPETIAAK--PSANSQNPTEDIARLAGVRFANISEPRRGLVLNEAQIKSMTG 580
Query: 584 GDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI------A 637
D + AR + N++ P F ++ N + + R ++IPFD+
Sbjct: 581 NDTLNARFLHENSFDFKP-QFKLYVNTNYLPAITDMTLFSSGRIVIIPFDRHFEEWEQEQ 639
Query: 638 NRDASFAQK---------LETKYTLEAKKWFL--KGVK-AYISKGLDVD-----IPEVCL 680
N A F++ L YTL K+ F K VK A +S D D + E
Sbjct: 640 NLKAEFSKPEAASAILNWLIEGYTLLQKEGFSQPKSVKDATMSYQHDSDKIELFVEEFLE 699
Query: 681 KAKEEERQGTDTYQAWIDDCCDIG 704
+ K+ E + + YQA+ + C D G
Sbjct: 700 QEKDAECRTSAVYQAYRNWCNDNG 723
>gi|269975282|gb|ACZ55506.1| primase [Staphylococcus phage SA1]
Length = 554
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 73/300 (24%), Positives = 120/300 (40%), Gaps = 47/300 (15%)
Query: 6 WKEQAKQAIHNGFKLIPLRLGDKRPQRLGK------WEEQLLSSEKIDKLPACGFGFVCG 59
W+E + NG+ ++P+ D + GK WE + E+I + G
Sbjct: 4 WQEYGETLWGNGYTVVPIYAPDADKKGAGKRPIGKDWERTINDKEQIQRWAERYTKNGIG 63
Query: 60 VGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTT 119
+ + A DID DE D G RIG++PK L FR K K
Sbjct: 64 ILTKYTPAVDIDVYDEDAVAHMADWVLENVGRAPCRIGREPKKLFLFRTESPFSKVKSGV 123
Query: 120 ---ESTQGH-LDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFK 175
+ Q H ++IL GQ FVAY IHP T ++Y W ++ PL + D +
Sbjct: 124 WEDDFGQRHAVEILADGQQFVAYGIHPDTNRDYYWLD-------DENPLNNAADFD---- 172
Query: 176 FFQEITVPLVKDKKS----IIPSKTWT-----NNNNRQYTNREITAFLSCFGEEFYNGSH 226
+EI++ ++ + + WT N + + + G ++G++
Sbjct: 173 -LEEISLDTAREIAAEFDRYAKEQGWTMVKRPMNGYEAIGTADEEDWAATAGIRKWDGTY 231
Query: 227 DE----------------WIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWD 270
++ +I V+ A+ R + K IAR W+ Q +D+ +F YKWD
Sbjct: 232 EDLRDLVMKYPNPEDYENYIKVLAALQISCRDQDEAKSIAREWAMQAHNFDDGDFEYKWD 291
>gi|319647188|ref|ZP_08001410.1| hypothetical protein HMPREF1012_02449 [Bacillus sp. BT1B_CT2]
gi|317390535|gb|EFV71340.1| hypothetical protein HMPREF1012_02449 [Bacillus sp. BT1B_CT2]
Length = 642
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 98/215 (45%), Gaps = 10/215 (4%)
Query: 409 LEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE 468
L+ + S+ LDS +G++DL+TG+ + ++L TK + +
Sbjct: 432 LDVRPMVSVRKQELDSHKYLFNCDNGVIDLKTGELLPHDRDLLFTKISPISYQPDADCPN 491
Query: 469 FLDLVSGYFESE------EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIK 522
+ + F + E++D+ + +G +L G Q + G G +GKST +N ++
Sbjct: 492 WKTFLESIFIDDQGTPNYEIIDFMQKAIGYSLTGDTTEQVMFFLFGNGRNGKSTFINTVQ 551
Query: 523 YAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMT 582
+ FG+ Y + ++ + A N + RL G+R V E+ E +++ + +KQ+T
Sbjct: 552 HLFGD-YGRQTNSDTFIKKKNDSA--INNDIARLDGARFVSAVESEEGQQLSESLVKQIT 608
Query: 583 GGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVR 617
GG+ M+AR Y E F F N V+
Sbjct: 609 GGEKMSARF-LRQEYFEFTPEFKVFFTTNHKPIVK 642
>gi|169825390|ref|YP_001691283.1| hypothetical protein M446_7040 [Methylobacterium sp. 4-46]
gi|168199312|gb|ACA21258.1| hypothetical protein M446_7040 [Methylobacterium sp. 4-46]
Length = 450
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 75/290 (25%), Positives = 124/290 (42%), Gaps = 9/290 (3%)
Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVS 474
F S+ D LG G++DL TG+ + ITK T + FL ++
Sbjct: 104 FVAQSEDWDGDPMVLGTPGGVVDLTTGKMRRAEPGDRITKQTAVAPADTADCPRFLRFLN 163
Query: 475 GYFESE-EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
S+ +M + + G +L G + + G GG+GKS + ++ A + Y A
Sbjct: 164 EATGSDLGLMRFLQQWAGYSLTGRTTEHAVVFVFGGGGNGKSVYLKVLATALAS-YAATA 222
Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593
+ ++ + L L G+R V SET E + A++K TGGD +TAR +
Sbjct: 223 TMDAFVASK---HAQHTTDLAMLKGARFVSASETQEGRAWDEARLKSFTGGDAITARFMH 279
Query: 594 GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTL 653
+ + P + IV N +R D+A RR ++PF + A D +KL +
Sbjct: 280 RDNMTFVP-TCKITIVGNHKPKIRTVDEAMRRRLNIVPFIRKPAEPDPDLERKLLAELP- 337
Query: 654 EAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDI 703
+W + G + GL P+ L A +E D + W++D C +
Sbjct: 338 GILRWPIDGCLDWQEHGLIR--PDAVLAATDEYLADEDLFGQWVEDRCKV 385
>gi|331091162|ref|ZP_08340004.1| hypothetical protein HMPREF9477_00647 [Lachnospiraceae bacterium
2_1_46FAA]
gi|330405384|gb|EGG84920.1| hypothetical protein HMPREF9477_00647 [Lachnospiraceae bacterium
2_1_46FAA]
Length = 769
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 101/229 (44%), Gaps = 8/229 (3%)
Query: 410 EAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF 469
+A S++ I D + +L Q+G LDL+TG+ T + +TK G + S F
Sbjct: 406 DAQSVYPIAMSEFDRNIYYLNCQNGTLDLQTGEFHLHTPQDKLTKIAGAAYDPNAKSPRF 465
Query: 470 LDLVSGYFESE-EVMDYFTRCVGMALLGGNKAQ-RFIHIRGVGGSGKSTLMNLIKYAFGN 527
+ +S + E + + + +G L G + + F + +GK TLM + G+
Sbjct: 466 IRFISEVMSGDKEKVRFMQKSLGYGLTGDTRYECMFFYYGATTRNGKGTLMESTLHVMGD 525
Query: 528 QYVINAEASDIMQNRPPEAGKANPS--LIRLMGSRIVIISETNENDEINAAKIKQMTGGD 585
Y + I P NP+ + RL G R ISE +N A+IK MTG D
Sbjct: 526 -YGLTVRPETIAAK--PSVNSQNPTEDIARLAGIRFANISEPRRGLVLNEAQIKSMTGND 582
Query: 586 CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK 634
+ AR + N++ P F ++ N + + R ++IPFD+
Sbjct: 583 TLNARFLHENSFDFKP-QFKLYVNTNYLPAITDMTLFSSGRIVIIPFDR 630
>gi|307580158|gb|ADN64127.1| P4 family phage/plasmid primase [Xylella fastidiosa subsp.
fastidiosa GB514]
Length = 842
Score = 74.7 bits (182), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 82/355 (23%), Positives = 141/355 (39%), Gaps = 35/355 (9%)
Query: 368 DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSR 427
D +E N K + + W R VE A +L A S+ + ++ LD+
Sbjct: 429 DTEKEKSKNAKIAAALEAWGKKSEMRSTVE-------AAMAL-AKSMLVVKAERLDTDPW 480
Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESE-----EV 482
L +G +DL TG E YIT+ + + F ++ E +
Sbjct: 481 LLNCANGTVDLRTGTLKAHRPEDYITRVVPVNYTPDAAAPVFKKTLARITCEEGQAQQPL 540
Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA--SDIMQ 540
D+ R G G + + + G+G +GKSTL++LI G+ + A D
Sbjct: 541 SDFLQRWFGYCATGSVREHKLAVMYGMGRNGKSTLLDLISGILGSYAGVAAPGLLMDGGH 600
Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600
+R P + L G R++ ++ET+E + +KQ TGGD + AR + +
Sbjct: 601 DRHPT------EIADLAGRRMMTVNETSEGGILREGFVKQATGGDSLKARHMRSDFFEFQ 654
Query: 601 PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR---DASFAQ-----KLETKYT 652
P + +K + ++ D W R ++IPF +A AQ K+ K
Sbjct: 655 PTHKLQLLTNHKPV-IKGQDVGIWSRLMLIPFKARFGTAEEIEAGVAQYPIDHKITEKLA 713
Query: 653 LEAK---KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIG 704
E + W + G + GL+ P + A ++ + D +I + C +G
Sbjct: 714 AEREGVLAWVIAGAVEWYRDGLNP--PGIVRDASKDYQTEQDRIAQFIAEECILG 766
>gi|71276703|ref|ZP_00652972.1| Phage/plasmid primase P4, C-terminal [Xylella fastidiosa Dixon]
gi|71901935|ref|ZP_00683989.1| Phage/plasmid primase P4, C-terminal [Xylella fastidiosa Ann-1]
gi|71162495|gb|EAO12228.1| Phage/plasmid primase P4, C-terminal [Xylella fastidiosa Dixon]
gi|71728295|gb|EAO30472.1| Phage/plasmid primase P4, C-terminal [Xylella fastidiosa Ann-1]
Length = 843
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 84/356 (23%), Positives = 142/356 (39%), Gaps = 37/356 (10%)
Query: 368 DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSR 427
D +E N K + + W R VE A +L A S+ + ++ LD+
Sbjct: 429 DTEKEKSKNAKIAVALEAWGKKSEMRSTVE-------AAMAL-AKSMLVVKAERLDTDPW 480
Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEE------ 481
L +G +DL TG E YIT+ + + F ++ EE
Sbjct: 481 LLNCANGTVDLRTGTLKAHRPEDYITRVVLVNYTPDAAAPVFKKTLA-RITCEEGQAQQP 539
Query: 482 VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA--SDIM 539
+ D+ R G G + + + G+G +GKSTL++LI G+ + A D
Sbjct: 540 LSDFLQRWFGYCATGSVREHKLAVMYGMGRNGKSTLLDLISGILGSYAGVAAPGLLMDGG 599
Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599
+R P + L G R++ ++ET+E + +KQ TGGD + AR + +
Sbjct: 600 HDRHPT------EIADLAGRRMMTVNETSEGGILREGFVKQATGGDSLKARHMRSDFFEF 653
Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR---DASFAQ-----KLETKY 651
P + +K + ++ D W R ++IPF +A AQ K+ K
Sbjct: 654 RPTHKLQLLTNHKPV-IKGQDVGIWSRLMLIPFKARFGTAEEIEAGAAQYPIDHKITEKL 712
Query: 652 TLEAK---KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIG 704
E + W + G + GL+ E+ A ++ + D +I D C +G
Sbjct: 713 AAEREGVLAWIVAGAVEWCKNGLNPT--EIVRDASKDYQTEQDRVTQFIKDECVLG 766
>gi|281354915|ref|ZP_06241409.1| phage/plasmid primase, P4 family [Victivallis vadensis ATCC
BAA-548]
gi|281317795|gb|EFB01815.1| phage/plasmid primase, P4 family [Victivallis vadensis ATCC
BAA-548]
Length = 474
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 112/264 (42%), Gaps = 24/264 (9%)
Query: 468 EFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527
+FLD + G EE + + G+ LLG N +Q+ + + G G GKSTL+N+++ G
Sbjct: 172 QFLDQLLGEAMPEEDISLLQQYAGLVLLGYNLSQKVLLLTGSAGGGKSTLVNILEGLIGR 231
Query: 528 QYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN--DEINAAKIKQMTGGD 585
+ Q + R +G ++ + + + AAKIK +TG D
Sbjct: 232 HNCCELRTEHLDQRF---------EIARFVGKTLLTAKDVKSSFLNTPGAAKIKALTGKD 282
Query: 586 CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDD--AWWRRYIVIPFD-KPIANRDAS 642
+TA +T + +F I N L V D AW RR + I ++ P + A
Sbjct: 283 TLTADFKGVSTGVDVIGNFNVVITANTELHVALDGDKEAWRRRLLWIKYELPPTSTPIAD 342
Query: 643 FAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQG-----TDTYQAWI 697
F +K+ T+ W L+G + + +G ++ + AK+ ER +DT ++
Sbjct: 343 FDEKILTEEGAGVLNWALEGARKLLVEG-----GKIRMTAKQTERVDKLLLESDTVGQFV 397
Query: 698 DDCCDIGENLWEESHSLAKSYSEY 721
C + L S L + Y
Sbjct: 398 HKCIVLSPGLNATSEELWSQFYHY 421
>gi|319648623|ref|ZP_08002835.1| hypothetical protein HMPREF1012_03874 [Bacillus sp. BT1B_CT2]
gi|317389271|gb|EFV70086.1| hypothetical protein HMPREF1012_03874 [Bacillus sp. BT1B_CT2]
Length = 629
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 96/206 (46%), Gaps = 14/206 (6%)
Query: 409 LEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE 468
L+ + S+ LDS +G++DL+TG+ + ++L TK + +
Sbjct: 432 LDVRPMVSVRKQELDSHKYLFNCDNGVIDLKTGELLPHDRDLLFTKISPIAYQTDADCPN 491
Query: 469 FLDLVSGYFESE------EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIK 522
+ + F + E++D+ + +G +L G Q + G G +GKST +N ++
Sbjct: 492 WKTFLESIFIDDQGTPNYEIIDFMQKAIGYSLTGDTTEQVMFFLFGNGRNGKSTFINTVQ 551
Query: 523 YAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMT 582
+ FG+ Y + ++ + A N + RL G+R V E+ E +++ + +KQ+T
Sbjct: 552 HLFGD-YGRQTNSDTFIKKKNDSA--INNDIARLDGARFVSAVESEEGQQLSESLVKQIT 608
Query: 583 GGDCMTARLNYGNTYSESPASFTPFI 608
GG+ M+AR + FTP I
Sbjct: 609 GGEKMSARF-----LRQEYFEFTPVI 629
>gi|239908831|ref|YP_002955573.1| hypothetical protein DMR_41960 [Desulfovibrio magneticus RS-1]
gi|239798698|dbj|BAH77687.1| hypothetical protein [Desulfovibrio magneticus RS-1]
Length = 478
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 75/324 (23%), Positives = 142/324 (43%), Gaps = 16/324 (4%)
Query: 321 KGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDL------SEEPE 374
K F Y K WYK NN + W + + ++ +V ED+ + E
Sbjct: 57 KNKFCYDCSDKKWYKY--NNTH-WEIDVKNSYLEAVSKVVDAYEDIKSIFRAKAFKEMAF 113
Query: 375 DNNKNSKSPRFWFN-TDYRRQNVEENSKAKSTAQSLEAG-SIFSITSDLLDSSSRFLGEQ 432
+N+ K+ D+R ++ + +S +G + +I D D+ L Q
Sbjct: 114 ENSHGVKAVDAHLKKLDFRISSINTMKRMRSILTIAGSGENSLAIRGDEWDNKPMVLCCQ 173
Query: 433 DGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFL---DLVSGYFESEEVMDYFTRC 489
+ ++DL+TG+ +K + Y+ KS +G + + L+S + +E++DY R
Sbjct: 174 NKVIDLKTGKSIKSDPKDYL-KSFAPVEWKGLSCKAPIWNKFLMSMFDNDKEMVDYVLRL 232
Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549
+G +L G G G +GK TL ++ G+ + + +P +
Sbjct: 233 LGYSLTGMCTEHILPIFYGEGRNGKGTLFEVLSEVLGSLAEPFSHDLLLKLKKPRNSSDP 292
Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609
+P ++ L G RI SE ++++ +N A +K++TG D + R +G+ S P + F++
Sbjct: 293 SPDIMDLRGRRIAWASEIDDSENLNPAIVKRLTGNDTLKGRHLFGDLVSFKP-THQLFLL 351
Query: 610 PNKHLFVRNPDDAWWRRYIVIPFD 633
NK + D A W R ++ +
Sbjct: 352 TNKKPKADSKDYALWSRIQLLKLN 375
>gi|291563668|emb|CBL42484.1| phage/plasmid primase, P4 family, C-terminal domain
[butyrate-producing bacterium SS3/4]
Length = 496
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 96/196 (48%), Gaps = 5/196 (2%)
Query: 480 EEVMDYFTRCVGMALLG-GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538
E+ D+ R +G ++LG N+ FI +GKSTL+N I+ G+ +
Sbjct: 204 EDKADFLQRALGYSMLGMSNEECMFILHGKTTRNGKSTLLNTIETMLGDYAKVAPVGMIC 263
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598
+R +A A+P+L L G R V +SE+NE +++ KIKQ+TGG+ ++AR Y + +
Sbjct: 264 RGDRQKDAEAASPTLAGLKGKRFVTMSESNEYGKLDEEKIKQLTGGEEISARALYQSAIT 323
Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAK 656
P FT ++ N V + R V+ F++ + +D +L + ++
Sbjct: 324 FKP-QFTLWLSCNDLPMVTDKSLFASERIKVVEFNRHFSPEEQDTHLKDELCEQSSMSGI 382
Query: 657 -KWFLKGVKAYISKGL 671
W ++G Y +GL
Sbjct: 383 FMWLVRGYIHYKERGL 398
>gi|88602291|ref|YP_502469.1| Phage/plasmid primase P4-like protein [Methanospirillum hungatei
JF-1]
gi|88187753|gb|ABD40750.1| Phage/plasmid primase P4-like protein [Methanospirillum hungatei
JF-1]
Length = 723
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 105/231 (45%), Gaps = 7/231 (3%)
Query: 476 YFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535
+ + ++ F G + L GN + F+ G G +GK ++L+K+ G+ Y A+
Sbjct: 439 FLNDQSLIGSFQELCGYSFLSGNPDEIFVICHGSGRNGKGKTLDLLKHLHGD-YAKTADF 497
Query: 536 SDIMQNRPPEAG-KANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
+ +G +P L RL SR+VI SET ++ + IK+++G D ++AR
Sbjct: 498 KTFLTPSYTNSGSNPSPDLARLYRSRLVIASETGNGSVLDESIIKRLSGNDTISARFLRQ 557
Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYT 652
+ +P F F+ N + D A R ++PF+ +RD K + + +
Sbjct: 558 EIFEYTP-EFVIFLQMNPIPRFNDWDKAIENRLWLVPFNHYFEPKDRDPDILDKFKAE-S 615
Query: 653 LEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDI 703
W ++G+K Y + G + A E R+ D+ +I+DCC +
Sbjct: 616 AGIFCWCMEGLKRYQALGRLTRAAAI-ETACESVRKENDSISCFIEDCCTL 665
>gi|163759247|ref|ZP_02166333.1| hypothetical protein HPDFL43_05765 [Hoeflea phototrophica DFL-43]
gi|162283651|gb|EDQ33936.1| hypothetical protein HPDFL43_05765 [Hoeflea phototrophica DFL-43]
Length = 607
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 67/260 (25%), Positives = 117/260 (45%), Gaps = 18/260 (6%)
Query: 492 MALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANP 551
+ L+G + F H G G +GKS M +I G+ V S I ++ G A+P
Sbjct: 320 LGLVGVTVQKLFFHY-GSGANGKSVAMEVICRLLGSASVTLPATSFIGESN--TGGSASP 376
Query: 552 SLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPN 611
+ RL G R + + E +++ +K++TGG+ +TAR + + P FTP + N
Sbjct: 377 DIARLYGRRFLRVKELPVGEDLKENLVKEVTGGEAITARDLHQGYFDFDPL-FTPHMSGN 435
Query: 612 KHLFVRNPDDAWWRRYIVIPFDKPI-ANRDASFAQ---KLETKYTLEAKKWFLKGVKAYI 667
+ + D+ WRR V+ + + A++ F + ET++ W + G++ ++
Sbjct: 436 GYPRITGMDNGIWRRMCVVHWPVQLSADQQRDFEDVMGEFETEFP-GILNWLIDGMRMFL 494
Query: 668 SKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDI--GENLWEESHSLAKSYSEYREQE 725
+GL IP+ +A ++ R D A+ C I GE L + Y Y
Sbjct: 495 EEGL--VIPDAVARATQDYRDEMDPTAAFCAACVRIAPGERLTAKDF-----YHAYVNYT 547
Query: 726 LNYDRKRISTRTVTLNLKQK 745
++ K IS L +K+K
Sbjct: 548 VDQGGKPISLTRFGLIMKRK 567
>gi|197303471|ref|ZP_03168510.1| hypothetical protein RUMLAC_02193 [Ruminococcus lactaris ATCC
29176]
gi|197297469|gb|EDY32030.1| hypothetical protein RUMLAC_02193 [Ruminococcus lactaris ATCC
29176]
Length = 769
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 88/329 (26%), Positives = 137/329 (41%), Gaps = 45/329 (13%)
Query: 410 EAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF 469
+A S++ I D + +L Q+G LDL+TG+ T + +TK G + + F
Sbjct: 406 DAQSVYPIAMSEFDRNVYYLNCQNGTLDLQTGEFHPHTPQDKLTKIAGAAYDPNAKNPRF 465
Query: 470 LDLVSGYFESE-EVMDYFTRCVGMALLGGNKAQ-RFIHIRGVGGSGKSTLMNLIKYAFGN 527
VS + E + + +G L G + + F + +GK TLM + G+
Sbjct: 466 TRFVSEVMSGDTEKARFMQKSLGYGLTGDTRYECMFFYYGATTRNGKGTLMESTLHVMGD 525
Query: 528 QYVINAEASDIMQNRPPEAGKANPS--LIRLMGSRIVIISETNENDEINAAKIKQMTGGD 585
Y + I P A NP+ + RL G R ISE +N A+IK MTG D
Sbjct: 526 -YGLTVRPETIAAK--PSANSQNPTEDIARLAGVRFANISEPRRGLVLNEAQIKSMTGND 582
Query: 586 CMTARLNYGNTYSESP-------ASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI-- 636
+ AR + N++ P A++ P I + LF R ++I FD+
Sbjct: 583 TLNARFLHENSFDFKPQFKLYVNANYLPAIT-DMTLFSSG-------RIVIILFDRHFEE 634
Query: 637 ----ANRDASFAQK---------LETKYTLEAKKWFL--KGVK-AYISKGLDVD-----I 675
N A F++ L YTL ++ F K VK A +S D D +
Sbjct: 635 WEQEQNLKAEFSRPEAASAILNWLIEGYTLLQEEGFAQPKAVKDATMSYQHDSDKMELFV 694
Query: 676 PEVCLKAKEEERQGTDTYQAWIDDCCDIG 704
E + K+ E + + YQA+ + C D G
Sbjct: 695 EEFLEQEKDAECRTSAVYQAYRNWCNDNG 723
>gi|171913150|ref|ZP_02928620.1| primase, putative [Verrucomicrobium spinosum DSM 4136]
Length = 599
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 69/275 (25%), Positives = 119/275 (43%), Gaps = 22/275 (8%)
Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539
EE ++ + G LLG NKAQR + + G G GKSTLM +++ G+Q ++
Sbjct: 305 EEDINMLQKWAGSVLLGNNKAQRLMMLLGSAGGGKSTLMTVLEGVIGSQ--------NVA 356
Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNEN--DEINAAKIKQMTGGDCMTARLNYGNTY 597
Q R G+ L+ +G ++ + A+ IK + GGD + A N
Sbjct: 357 QMRTEHLGE-RFELLSFVGKTLLTGKDVAAEFLRHKGASTIKSLVGGDLLEAEKKGFNNR 415
Query: 598 SESPASFTPFIVPNKHLFVR--NPDDAWWRRYIVIPF-DKPIANRDASFAQKLETKYTLE 654
+ +F I N L +R DAW RR +V+ + P R + F Q+L +
Sbjct: 416 VQIRGNFNIGITCNADLVIRLEGDVDAWRRRLLVLRYVAPPPKKRISGFDQELLKQEGAG 475
Query: 655 AKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQG----TDTYQAWIDDCCDIGENLWEE 710
+W ++G A I + L V + ++++ + +D+ + ++ DC + E
Sbjct: 476 ILRWMVEGAIALI-RDLRTHGDYVLTERQQDQIEALLDQSDSIKLFVRDCLERSEGTDVT 534
Query: 711 SHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK 745
L + Y EY + +STR ++ L K
Sbjct: 535 KKELEQEYCEYCD---TMGWSPLSTREISQQLNDK 566
>gi|254366072|ref|ZP_04982117.1| possible phiRv1 phage protein [Mycobacterium tuberculosis str.
Haarlem]
gi|134151585|gb|EBA43630.1| possible phiRv1 phage protein [Mycobacterium tuberculosis str.
Haarlem]
Length = 248
Score = 72.8 bits (177), Expect = 2e-10, Method: Composition-based stats.
Identities = 63/210 (30%), Positives = 103/210 (49%), Gaps = 16/210 (7%)
Query: 521 IKYAFGNQYVINAEASDIMQNRPPEAGKANPS-LIRLMGSRIVIISETNENDEINAAKIK 579
I+YA G+ Y AE D+ +R A+P+ + L G R V +SE+ ++ + + IK
Sbjct: 6 IRYALGD-YACTAEP-DLFMHRE----NAHPTGEMDLRGVRWVAVSESEKDRRLAESTIK 59
Query: 580 QMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR 639
++TGGD + AR + E S TP ++ N V D A WRR V+PF+ I
Sbjct: 60 RLTGGDTIRAR-KMRQDFVEFTPSHTPLLITNHLPRVPGDDTAIWRRIRVVPFEVVIPAD 118
Query: 640 DASFAQKLETKYTLEAK---KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAW 696
+ ++L+ + LEA W + G Y GL P+ L A R+ +DT + +
Sbjct: 119 EQD--RELDARLQLEADSILSWAVAGWSDYQRIGLSQ--PDAVLAATSNYREDSDTIKRF 174
Query: 697 IDDCCDIGENLWEESHS-LAKSYSEYREQE 725
IDD C + + + + L +++ +R QE
Sbjct: 175 IDDECVTSSPVLKATTTHLFEAWQRWRVQE 204
>gi|169347120|ref|ZP_02866062.1| D5 N like family [Clostridium perfringens C str. JGS1495]
gi|169296803|gb|EDS78932.1| D5 N like family [Clostridium perfringens C str. JGS1495]
Length = 756
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 100/229 (43%), Gaps = 19/229 (8%)
Query: 485 YFTRCVGMALLGGNKAQRFIHIRGVGG-SGKSTLMNLIKYAFGNQYVINAEASDIMQNRP 543
+ + +G L G + + + GV +GK TL I G Y A + I +
Sbjct: 473 FLQKILGYGLSGDTRHECLFILYGVTTRNGKGTLCETILNLLGT-YACTARSETIALKQN 531
Query: 544 PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPAS 603
G + + RL G R V ISE + +N A++K MTG D + AR + N++ P
Sbjct: 532 NSQGPS-EDVARLAGVRFVNISEPQKGLVLNVAQVKSMTGNDTLNARFLHENSFDFKP-Q 589
Query: 604 FTPFIVPN-----KHLFVRNPDDAWWRRYIVIPFDKPIAN--RDASFAQKLETKYTLEA- 655
F +I N L + D W +IPFDK RD + Q+ ++ A
Sbjct: 590 FKLYINTNYLPSVTDLTIFKSDRIW-----IIPFDKHFNEEMRDITLKQQFTSEPVKSAI 644
Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIG 704
W ++G A +GL V P+V +A + D + +I+DC ++G
Sbjct: 645 LNWLIQGYDALQREGLSV--PKVVKEATHQYEHDNDKIKLFIEDCLELG 691
>gi|283783337|ref|YP_003374091.1| nucleoside triphosphatase, D5 family [Gardnerella vaginalis 409-05]
gi|283441568|gb|ADB14034.1| nucleoside triphosphatase, D5 family [Gardnerella vaginalis 409-05]
Length = 774
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 106/230 (46%), Gaps = 10/230 (4%)
Query: 410 EAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGT---PFVEGEPS 466
EA S++ I+ + D + Q+G LDL+ G K ITK + P E
Sbjct: 407 EAQSVYPISMEAFDKNIYLFNCQNGTLDLQHGVFRKHLATDLITKVSPVFYDPKARSERF 466
Query: 467 QEFLD-LVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGG-SGKSTLMNLIKYA 524
++F+D ++SG + E+ + Y + +G AL G + + + G +GK TLM +
Sbjct: 467 RQFVDEIMSG--DCEKAL-YLQKSLGYALSGDTRYECMFFLFGESTRNGKGTLMESVLSV 523
Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGG 584
G+ Y A I + P + + + RL G R ISE + +N+A++K MTG
Sbjct: 524 MGD-YGKAVRAETIALKKNPNSSQPTEDVARLAGVRFANISEPSRGLFLNSAQVKYMTGS 582
Query: 585 DCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK 634
D + AR + N++ P F ++ N + + R +IPF++
Sbjct: 583 DTLNARFLHENSFDFKP-QFKLYVNTNYLPVISDMTVFSSDRMQIIPFNR 631
>gi|327396932|dbj|BAK14298.1| phage-related protein [Red sea bream iridovirus]
Length = 920
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 81/183 (44%), Gaps = 5/183 (2%)
Query: 454 KSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSG 513
++ G +P + + + F EV +YF R V +GGN + + G G +G
Sbjct: 581 ETVGNTMTAKQPLCDVIRFYNTTFPDPEVREYFLRQVSHVFVGGNADKVCLFWTGSGNNG 640
Query: 514 KSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLM-GSRIVIISETNENDE 572
K+ + + G+ V ++ ++ R P ANP L RL G R ++ E N ++
Sbjct: 641 KTVTQTMFEKMLGSFAV--KMSTTVLTGRKPCVTSANPELARLRNGVRWAVMEEPNNDET 698
Query: 573 INAAKIKQMTGGDCMTARLNY--GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVI 630
IN +K MTG D AR + G SE F + N ++ D A W R V+
Sbjct: 699 INPGPLKSMTGNDSFFARDLWCSGKDTSEIIPMFKLHCICNTLPDIKMADMATWNRVRVV 758
Query: 631 PFD 633
PF+
Sbjct: 759 PFE 761
>gi|62421295|gb|AAX82415.1| D5 family NTPase [Orange-spotted grouper iridovirus]
Length = 920
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 81/183 (44%), Gaps = 5/183 (2%)
Query: 454 KSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSG 513
++ G +P + + + F EV +YF R V +GGN + + G G +G
Sbjct: 581 ETVGNTMTAKQPLCDVIRFYNTTFPDPEVREYFLRQVSHVFVGGNADKVCLFWTGSGNNG 640
Query: 514 KSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLM-GSRIVIISETNENDE 572
K+ + + G+ V ++ ++ R P ANP L RL G R ++ E N ++
Sbjct: 641 KTVTQTMFEKMLGSFAV--KMSTTVLTGRKPCVTSANPELARLRNGVRWAVMEEPNNDET 698
Query: 573 INAAKIKQMTGGDCMTARLNY--GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVI 630
IN +K MTG D AR + G SE F + N ++ D A W R V+
Sbjct: 699 INPGPLKSMTGNDSFFARDLWCSGKDTSEIIPMFKLHCICNTLPDIKMADMATWNRVRVV 758
Query: 631 PFD 633
PF+
Sbjct: 759 PFE 761
>gi|303326922|ref|ZP_07357364.1| phage/plasmid primase, P4 family [Desulfovibrio sp. 3_1_syn3]
gi|302862910|gb|EFL85842.1| phage/plasmid primase, P4 family [Desulfovibrio sp. 3_1_syn3]
Length = 540
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 72/301 (23%), Positives = 127/301 (42%), Gaps = 32/301 (10%)
Query: 433 DGILDLETGQKVKPTKELYITKSTGTPF-----VEGEPSQEFLD-LVSGYFESEEVMDYF 486
+G++DL TG+ E YI + T + + +P E L+S +E++D+
Sbjct: 175 NGVIDLRTGELRPGRPEEYILNAIVTEYDPALLEQDDPCPETNKFLLSSMDGDQELVDFI 234
Query: 487 TRCVGMALLGGNKAQRFIHIRGVGG-SGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545
R +G L+ + F G G +GK TL+ L+ + G + +Q +
Sbjct: 235 WRLLGYGLVTERRDHIFTIFWGEHGRNGKDTLIKLVTHVLGQTLSGDVPVEMFLQMQQTR 294
Query: 546 AGKA-NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604
A +P ++ L G + I+E E AK+K++TGG +TAR + +
Sbjct: 295 NSSAPSPDVLALRGMCLAWINEAEEGQRFALAKLKKLTGGGYVTARGLQDKQQTTWLQTH 354
Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVI------------PFDKPIANRDASFAQKLETKYT 652
P + N+ + D A+W R +++ P+++P A++D + E K
Sbjct: 355 LPIMTTNELPKAKADDAAFWARAVLVKWPLSFVEEPQQPYERP-ADKDLNEKICAEAKGV 413
Query: 653 LEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESH 712
L ++G Y+ GL IP+ E+R D +I D C+ +ESH
Sbjct: 414 LAR---MVRGCMEYLRDGL--KIPDKVKNWTREQRASWDDVGLFITDWCE------QESH 462
Query: 713 S 713
Sbjct: 463 Q 463
>gi|147919628|ref|YP_686631.1| phage-like protein [uncultured methanogenic archaeon RC-I]
gi|110622027|emb|CAJ37305.1| hypothetical phage-like protein [uncultured methanogenic archaeon
RC-I]
Length = 867
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 78/335 (23%), Positives = 138/335 (41%), Gaps = 20/335 (5%)
Query: 399 NSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLET------GQKVKPTKELYI 452
N K+ S+ SI + D LD + +G +L+T G++ KP
Sbjct: 481 NIKSMIKMASMTIESIILDSVDELDKDKHLINLLNGAFNLDTSEFIPHGERTKPYLMTLR 540
Query: 453 TKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGS 512
P + +F+D ++ +++ DY R +G AL G ++F G G +
Sbjct: 541 ANVAYNPEAKRPRFDKFIDEIT--CGDKDLADYLQRSLGYALSGYTGEEKFFAWFGNGRN 598
Query: 513 GKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDE 572
GKS L I Y G+ Y +A A+ + P + S RL G R + SE EN
Sbjct: 599 GKSKLAEAILYLMGD-YASSANATAFIM--PKNGNIRSFSFARLRGKRFIRCSEVPENSV 655
Query: 573 INAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF 632
N +IK+ D +TA +G + P F+ HL D + ++ V+PF
Sbjct: 656 WNDVRIKEFL-SDTITAEEKFGAEFDYKPQGKLFFLC--NHLPAMPKDRSTETKFFVVPF 712
Query: 633 DKPIANRDASFAQKLETKYTLEAKK---WFLKGVKAYISKGLDVDIPEVCLKAKEEERQG 689
D + +E EA+ W ++G + + + L I + +A + +
Sbjct: 713 DLQLEPHQVDMG--IEEALKAEAEGILLWMIEGYQKWKANDLR-RISQAVKEASDRYWRD 769
Query: 690 TDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQ 724
D + A++ D C I + ++ L ++ ++E+
Sbjct: 770 ADWFAAFLSDMCVIDPSAEVDAGELYTTFKSWQER 804
>gi|19881514|ref|NP_612331.1| ORF109L [Infectious spleen and kidney necrosis virus]
gi|19773719|gb|AAL98833.1|AF371960_109 ORF109L [infectious spleen and kidney necrosis virus]
Length = 921
Score = 70.9 bits (172), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 81/183 (44%), Gaps = 5/183 (2%)
Query: 454 KSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSG 513
++ G +P + + + F EV +YF R V +GGN + + G G +G
Sbjct: 582 ETVGNTMTAKQPLCDVIRFYNTTFPDPEVREYFLRQVSHVFVGGNADKVCLFWTGSGNNG 641
Query: 514 KSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLM-GSRIVIISETNENDE 572
K+ + + G+ V ++ ++ R P ANP L RL G R ++ E N ++
Sbjct: 642 KTVTQTMFEKMLGSFAV--KLSTTVLTGRKPCVTSANPELARLRNGVRWAVMEEPNNDET 699
Query: 573 INAAKIKQMTGGDCMTARLNY--GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVI 630
IN +K MTG D AR + G SE F + N ++ D A W R V+
Sbjct: 700 INPGPLKSMTGNDSFFARDLWCSGKETSEIIPMFKLHCICNTLPDIKMADMATWNRVRVV 759
Query: 631 PFD 633
PF+
Sbjct: 760 PFE 762
>gi|292659055|gb|ADE34443.1| D5 family NTPase [Turbot reddish body iridovirus]
Length = 920
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 79/181 (43%), Gaps = 5/181 (2%)
Query: 456 TGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKS 515
G +P + + + F EV +YF R V +GGN + + G G +GK+
Sbjct: 583 VGNTMTAKQPLCDVIRFYNTTFPDAEVREYFLRQVSHVFVGGNADKVCLFWTGSGNNGKT 642
Query: 516 TLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLM-GSRIVIISETNENDEIN 574
+ + G+ V ++ ++ R P ANP L RL G R ++ E N ++ IN
Sbjct: 643 VTQTMFEKMLGSFAV--KMSTTVLTGRKPCVTSANPELARLRNGVRWAVMEEPNNDETIN 700
Query: 575 AAKIKQMTGGDCMTARLNY--GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF 632
+K MTG D AR + G SE F + N ++ D A W R V+PF
Sbjct: 701 PGPLKSMTGNDSFFARDLWCSGKDTSEIVPMFKLHCICNTLPDIKMADMATWNRVRVVPF 760
Query: 633 D 633
+
Sbjct: 761 E 761
>gi|295108406|emb|CBL22359.1| phage/plasmid primase, P4 family, C-terminal domain [Ruminococcus
obeum A2-162]
Length = 769
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 64/232 (27%), Positives = 104/232 (44%), Gaps = 14/232 (6%)
Query: 410 EAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGT---PFVEGEPS 466
+A S++ I D + +L Q+G LDL+TG+ T + +TK G P + S
Sbjct: 406 DAQSVYPIAMSEFDRNVYYLNCQNGTLDLQTGEFHPHTPQDKLTKIAGAAYDPNAKNPRS 465
Query: 467 QEFL-DLVSGYFESEEVMDYFTRCVGMALLGGNKAQ-RFIHIRGVGGSGKSTLMNLIKYA 524
F+ +++SG + M + +G L G + + F + +GK TLM +
Sbjct: 466 TRFVAEVMSGDADKARFMQ---KSLGYGLTGDTRYECMFFYYGATTRNGKGTLMESTLHV 522
Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPS--LIRLMGSRIVIISETNENDEINAAKIKQMT 582
G+ Y + I P A NP+ + RL G R ISE +N A+IK MT
Sbjct: 523 MGD-YGLTVRPETIAAK--PSANSQNPTEDIARLAGVRFANISEPRRGLVLNEAQIKSMT 579
Query: 583 GGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK 634
G D + AR + N++ P F ++ N + + R ++IPFD+
Sbjct: 580 GNDTLNARFLHENSFDFKP-QFKLYVNTNYLPAITDMTLFSSGRIVIIPFDR 630
>gi|332703042|ref|ZP_08423130.1| phage/plasmid primase, P4 family [Desulfovibrio africanus str.
Walvis Bay]
gi|332553191|gb|EGJ50235.1| phage/plasmid primase, P4 family [Desulfovibrio africanus str.
Walvis Bay]
Length = 572
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 77/355 (21%), Positives = 154/355 (43%), Gaps = 25/355 (7%)
Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLD--L 472
I+ + + + L ++ ++DLETG+ + + Y+ K++ ++ EF D L
Sbjct: 188 LGISGEEWERHTSLLVCKNCVVDLETGRSYQGRPDWYLYKASPVEYLGLNVGCEFWDDLL 247
Query: 473 VSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRG-VGGSGKSTLMNLIKYAFGNQYVI 531
+ ++ +DY G + G + + F G + + KST+ I+ A G+
Sbjct: 248 WKVSCKDQDWIDYLGLVAGYSATGLSNYKDFYCAYGPLADNAKSTVYGAIRAALGDYSET 307
Query: 532 NAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGG-DCMTAR 590
+ R + P ++RL R+ + E +N + IK+ +GG D ++AR
Sbjct: 308 LPVELLLDGGRVKASSGPQPDIMRLRHLRMAVFDEAEQNHHFAMSAIKRYSGGEDMISAR 367
Query: 591 LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI----------ANRD 640
YG P++ + N + D+ ++ R VIPF+ AN +
Sbjct: 368 GMYGKEQVTFPSTAKLHLHTNFIPKAKGNDEGFYNRLRVIPFEACFLLPGRTPPSGANPE 427
Query: 641 ASF-AQKLETKYTLEAKK-----WFLKG---VKAYISKGLDVDIPEVCLKAKEEERQGTD 691
++ AQ K LE + W ++ V I++G + +P+ +A E R D
Sbjct: 428 HTYQAQPGVVKRELERCRPGILSWIVRNAVKVHKLIAEGKGLPLPDRVREAVREYRNEQD 487
Query: 692 TYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIST-RTVTLNLKQK 745
++ +CC +GE + L +Y ++ +E+ K+I T +T+ +++K +
Sbjct: 488 MTGRFLRECCVVGEGA-TQMKDLYGAYRKWCIEEMQLTDKQIPTMKTLGMDVKNR 541
>gi|291336267|gb|ADD95832.1| predicted ATPase [uncultured organism MedDCM-OCT-S09-C213]
Length = 890
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 115/559 (20%), Positives = 219/559 (39%), Gaps = 70/559 (12%)
Query: 189 KSIIPSKTWTNNNNRQYTN-----REITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGS 243
+ I P +T + + N + +TA LS E +EWI V +++ G
Sbjct: 269 RRIKPKRTREERQDLDFHNNIDMVKRLTAMLSRKRAE----DRNEWIRVGWILYNIGNGC 324
Query: 244 SKGKEIARRWSKQ-GSTYDEENFNYKWDTF---DFEEIGDTAKKRSTFTSLFYHH----- 294
+ ++I +S+Q +DE +W+ D+ IG S Y
Sbjct: 325 DEARDIWLDFSRQCDDKFDETECITQWNRMVKKDYS-IGSLRHFASVDNPTAYDKLRDEN 383
Query: 295 -GKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWY-------KKDKNNVYIWSL 346
K I + L S A +A++ +Y + K WY ++ + +Y+
Sbjct: 384 VKKYIQQSLGGSHNDIA--RALYELYGTEFICASIRHKLWYQYQNHRWREIEEGIYLKK- 440
Query: 347 TLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNS----KSPRFWFNTDYRRQNVEENSKA 402
+I+ SI+ S+ +D FD +D + + + + + + +N+
Sbjct: 441 ---RISTSILQKYSSLSKDYFDKLANAQDQGEQAMYKERIKQLMKLVNSLKSAPFKNNVM 497
Query: 403 KSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVE 462
+ + GS + L+ + +G Q+G+ D + + + YI+ +
Sbjct: 498 RECMEVFYDGSF----TKKLNKNPYLVGFQNGVYDTRIHAFREGSPDDYISLQMAIEYKR 553
Query: 463 GEPS----QEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLM 518
+ Q+ D +S F + V DYF +GGN+++ G G + KS
Sbjct: 554 FNETALEVQQVNDFLSKVFPDKSVRDYFLDTSSDVFVGGNQSKIVQVWSGEGDNAKSVTQ 613
Query: 519 NLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRL-MGSRIVIISETNENDEINAAK 577
L + G+ Y + S I+ R ++ A P L+R G R ++ E ++ D IN
Sbjct: 614 TLFEKMLGD-YSVKLPTSLIIGKR-TQSSAACPELVRAGNGVRFAVLQEPDQKDVINIGI 671
Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637
+K+++G D AR + +P F ++ N+ + D A W R ++PF+
Sbjct: 672 LKELSGNDTFFARGLFKEGGEITPM-FKLILICNEPPQLPYGDKAVWNRIRLLPFEATFC 730
Query: 638 N----------------RDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLK 681
+ +D FA K+ +EA + L + + + +D P
Sbjct: 731 DDAPDTFEEQLLQKRFPKDRQFADKIPG--MIEAFAYMLLEHRKIVKQRID---PPKVKM 785
Query: 682 AKEEERQGTDTYQAWIDDC 700
A E R+ D Y+ +I++C
Sbjct: 786 ATEGYRKKNDIYRQFIEEC 804
>gi|29567083|ref|NP_818646.1| gp108 [Mycobacterium phage Barnyard]
gi|29425808|gb|AAN02162.1| gp108 [Mycobacterium phage Barnyard]
Length = 916
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 84/372 (22%), Positives = 151/372 (40%), Gaps = 52/372 (13%)
Query: 422 LDSSSRFLGEQDGILDLE-TGQKVKPTK-ELYITKSTGTPFVEGE--PS------QEFLD 471
+D+ L +G+++L TG +++ + E Y+T +TG P++ + P+ QE+LD
Sbjct: 530 IDARPDLLAVANGVVELNPTGARLRDAEPEDYLTLNTGVPWLHPKEIPNTGQKLWQEYLD 589
Query: 472 LVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVI 531
+ +G AL+G N ++ I +G +GKS ++ +I G+ Y
Sbjct: 590 ---KFLPDPSYRRDVQIILGHALIGSNPHKKLIIFKGAANTGKSVMITMINEVLGD-YAK 645
Query: 532 NAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM---TGGDCMT 588
S + K NP L + + R+V I E + D+ N + QM TG D +
Sbjct: 646 TTNRSLFTYH------KLNPVLAQALPKRVVSIVELSR-DKRNPLTVDQMKTATGNDYIE 698
Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLE 648
A L N F P +V N + D A R VI F+ N D + A ++
Sbjct: 699 AELKGKNATINRVPMFLPIMVTNTVPEIEGHDKALRERLRVISFNVVEQNPDDTIAARMR 758
Query: 649 TKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD-------CC 701
+ W ++G Y E + R TD + + +DD C
Sbjct: 759 RESRTAVLNWLIEGYNLYCQS-------ERKFPENDRMRADTDEFASDMDDISLFAKECL 811
Query: 702 DIGENLWEESHSLAKSYSEY---------REQELNYD-----RKRISTRTVTLNLKQKGF 747
N+ + S + A+ E+ R ++ +D + ++++ T LK+ GF
Sbjct: 812 KPAPNMDKPSINWARDQVEWCTSRAAVWTRYEQWLFDNHIPEKHKLTSPQFTRRLKELGF 871
Query: 748 IGGIKREKIEKE 759
+ ++ K+
Sbjct: 872 NSPQNKVRVNKQ 883
>gi|227544673|ref|ZP_03974722.1| possible ATPase [Lactobacillus reuteri CF48-3A]
gi|227185349|gb|EEI65420.1| possible ATPase [Lactobacillus reuteri CF48-3A]
Length = 207
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 95/210 (45%), Gaps = 14/210 (6%)
Query: 565 SETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWW 624
+E E +N + +KQ+ D + A Y +S +P S T + N V D+ W
Sbjct: 2 AELEEGKRLNTSIVKQLCSTDEIYAEKKYMKPFSFTP-SHTIVLYTNYLPHVGGNDEGIW 60
Query: 625 RRYIVIPFDKPIANRD--ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKA 682
RR IVIPF IA R+ ++AQ+L K +W ++G + I + + P KA
Sbjct: 61 RRLIVIPFKAKIAKRNDIKNYAQRLTEKAGPAVLQWIIEGAQRTIQQNYRLTTPAAVEKA 120
Query: 683 KEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNL 742
D ++++ C++ + ++S L + Y EY + Y R ST L
Sbjct: 121 VNAYHADNDWLGHFLNENCELDPSYEQKSGDLYQKYREYCQGIGEYIR---STTDFYTAL 177
Query: 743 KQKGFIGGIKREKIEKEWKSKRIIKGLKLK 772
K GF ++ K+ + R IKGL+LK
Sbjct: 178 KNAGF------QRQHKQ--NGRFIKGLRLK 199
>gi|157310960|ref|YP_001468956.1| putative DNA primase [Corynebacterium phage P1201]
gi|95832108|gb|ABF57508.1| putative DNA primase [Corynebacterium phage P1201]
Length = 881
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 67/267 (25%), Positives = 124/267 (46%), Gaps = 18/267 (6%)
Query: 422 LDSSSRFLGEQDG-ILDL--ETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE 478
DS +LG G LDL ET + K +T ST F + + + +
Sbjct: 532 FDSIGEYLGVAGGKTLDLSEETFRVRDSEKSDMLTMSTRAIFQKNATHPNWEKFLERFLP 591
Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538
+ + + +G +L+ GN + + + G +GK+T++ I A G+ Y A +
Sbjct: 592 DPTLRRFVQKVMGYSLVDGNPEKVMVFLFGPNHTGKTTILEAIGSALGD-YASPINAVKL 650
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR-LNYGNTY 597
+ G N ++ + R+V +SE + E++A +KQ+TG D R ++
Sbjct: 651 LGR---NTGGPNSEVLANVNRRMVFMSEIGTDYELSANSLKQVTGNDSQQLRGVHSAEVI 707
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKK 657
+++P SFTP++ N ++ D+A R ++IPF+K +N+ + +K E+ ++
Sbjct: 708 AKTP-SFTPYVATNSIPGIQGGDEALSNRLLIIPFNK--SNKFS--VKKEESIFSPMVYP 762
Query: 658 ----WFLKGVKAYISKGLDVD-IPEVC 679
W L+G + Y +GL D PE+
Sbjct: 763 AIFWWLLEGFQMYKEEGLSRDEWPEII 789
>gi|119383107|ref|YP_914163.1| P4 family phage/plasmid primase [Paracoccus denitrificans PD1222]
gi|119372874|gb|ABL68467.1| phage/plasmid primase, P4 family [Paracoccus denitrificans PD1222]
Length = 613
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 64/270 (23%), Positives = 115/270 (42%), Gaps = 13/270 (4%)
Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540
E+ + R G+++ G Q+ G G +GKS L++L+ FG+ Y +A +
Sbjct: 299 EMRRFLQRWFGLSMTG-LAVQKLAFFHGGGANGKSVLVDLMARMFGD-YSASARIESLTG 356
Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600
+ P L+ L+ +R V SE + + + +K +TGG+ M R Y +
Sbjct: 357 KNKKSGSDSQPDLMPLIAARFVRTSEPEDGERLQEGLVKALTGGEPMMIRALYSDFIIFR 416
Query: 601 PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAK---K 657
P F I N +R DD WRR +++ F I + ++L+ E
Sbjct: 417 PI-FKLTISGNHLPEIRGGDDGIWRRVMLVNFPVQIPEKKRIPKEELDEILWQERSGILN 475
Query: 658 WFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIG--ENLWEESHSLA 715
W ++G+ ++ GL P+ A E R +D ++ D + E + + L
Sbjct: 476 WLIQGLIDFLDGGLQE--PDDVTSATEGYRAESDPIGTFLGDATVVTGFEGDFMTARELI 533
Query: 716 KSYSEYREQELNYDRKRISTRTVTLNLKQK 745
++++ + E+ R RTV+ LK K
Sbjct: 534 EAFNFWIEER---GETRWGNRTVSNKLKAK 560
>gi|29366784|ref|NP_813724.1| gp9a [Streptomyces phage phiBT1]
gi|29243104|emb|CAD80132.1| gp9a [Streptomyces phage phiBT1]
Length = 808
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 88/375 (23%), Positives = 157/375 (41%), Gaps = 35/375 (9%)
Query: 413 SIFSITSDL--LDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGT---PFVEGEPSQ 467
S+ S+ D D+ L ++G++DL TG K +T S + P + +
Sbjct: 443 SVPSVHVDAGEFDAKPHLLSFRNGVVDLRTGNIRAHDKNDMLTVSMPSDYDPTAKAPRWE 502
Query: 468 EFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527
+FL + + + E+ +Y R G + G Q F + G G +GKS F
Sbjct: 503 QFLREI--FPDHPELAEYMQRLTGYGITGNTSEQCFAVLWGKGSNGKSVYTETCTDLFAP 560
Query: 528 QYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCM 587
+ +++ G N L L +R+V+ SE ++ A +K++TG D +
Sbjct: 561 --ITKTTPFATFEDKGNGGGIPN-DLAALRDARLVMASEGESGKPMSEAVLKRVTGKDKV 617
Query: 588 TARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKL 647
TAR ++ +P F + N ++ D+ WRR +IPF + A + + L
Sbjct: 618 TARFLRQEFFTFTP-KFLILLATNHKPKFKSQDEGLWRRVKLIPFTRYFAPEERDY--DL 674
Query: 648 ETKYTLEAK---KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIG 704
+ K EA W ++G + + GL PE KA E R +D + +
Sbjct: 675 DRKLRAEAAGIIAWAVRGAVDWYANGL--RDPECISKATREYRATSDALAGFFPGVLEAA 732
Query: 705 ENLWEESHSL--AKSYSEYRE--QELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEW 760
++ +H L A +Y+ Y + + RK + +R K F G ++ + K+
Sbjct: 733 DD----THVLPGADAYTAYTDWCEAEGLQRKEVWSR--------KAFYGAMEERNVMKKK 780
Query: 761 KSKRI-IKGLKLKPA 774
+K I + G+K+ A
Sbjct: 781 TNKGIALVGVKVADA 795
>gi|169334190|ref|ZP_02861383.1| hypothetical protein ANASTE_00588 [Anaerofustis stercorihominis DSM
17244]
gi|169258907|gb|EDS72873.1| hypothetical protein ANASTE_00588 [Anaerofustis stercorihominis DSM
17244]
Length = 359
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 71/317 (22%), Positives = 132/317 (41%), Gaps = 10/317 (3%)
Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSG- 475
I+ DS ++G L ++T + ++ +TK + + S + +S
Sbjct: 5 ISVSEFDSDPYIFNCKNGTLRVDTFECLEHKSSDKLTKISNVIYDPNAKSHRWDKFISEI 64
Query: 476 YFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGG-SGKSTLMNLIKYAFGNQYVINAE 534
F +E + + +G L G + + + G +GK TL + G+ Y A
Sbjct: 65 MFGDKEKAKFLQKLLGYGLTGDTRHECMTILYGASTRNGKGTLCESVLKVLGS-YGCTAR 123
Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
+ Q + + + RL G R V ISE + +NAA++K MTG D + AR +
Sbjct: 124 PETLAQKNNANSSQPTEDIARLAGVRFVNISEPGKGLVLNAAQVKSMTGNDTINARFLHE 183
Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYT 652
N++ P F +I N V + R I++PF++ + +D S Q+
Sbjct: 184 NSFDFQPL-FKLYINTNYLPAVNDMTIFTSGRVIIVPFERHFDESEQDKSLKQEFSRPEV 242
Query: 653 LEA-KKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEES 711
A W L+G +GL +P A + +D +++DC + G+ E +
Sbjct: 243 QSAILNWLLEGYALLRKEGL--VLPHSVKDATARYQHDSDKMVLFMEDCMEQGD-FEERT 299
Query: 712 HSLAKSYSEYREQELNY 728
S+ + Y ++ + +Y
Sbjct: 300 SSVYRCYKDWCAENGHY 316
>gi|262113722|emb|CAR95389.1| hypothetical protein [Streptococcus phage phi-m46.1]
Length = 610
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 64/217 (29%), Positives = 94/217 (43%), Gaps = 30/217 (13%)
Query: 411 AGSIFSITSDLLDSSSRFLGEQDGILDLETG----QKVKPTKELYITKSTGTPFVEGEPS 466
A + S+ LDS L + DL G Q+ P E YITK T PS
Sbjct: 404 AKPMLSVELSELDSDDLLLNTPEATYDLRKGINGQQEHNP--EDYITKITAV-----SPS 456
Query: 467 QEFLDL----VSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLI 521
+ + L ++ +F +E++DY +GMA +G + I G G +GKST N I
Sbjct: 457 DQGMGLWQETLATFFCNDQELIDYVQEIIGMAAIGKVYQEHMIIAYGGGANGKSTFWNTI 516
Query: 522 KYAFGN-QYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQ 580
G+ ++A+A + R +P L L G R+VI SE E +N A +KQ
Sbjct: 517 ARVLGSYSGKLSADALTMSNKR-----NVSPELAELKGKRLVIASEMAEGMRLNTAVVKQ 571
Query: 581 MTGGDCMTARLNYGNTYSESPASFTP---FIVPNKHL 614
+T D + A Y + P F P ++ HL
Sbjct: 572 ITSTDEIQAEKKY-----KDPFHFVPSHTLVLNTNHL 603
>gi|212702690|ref|ZP_03310818.1| hypothetical protein DESPIG_00718 [Desulfovibrio piger ATCC 29098]
gi|212673850|gb|EEB34333.1| hypothetical protein DESPIG_00718 [Desulfovibrio piger ATCC 29098]
Length = 540
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 67/289 (23%), Positives = 124/289 (42%), Gaps = 26/289 (8%)
Query: 433 DGILDLETGQKVKPTKELYITKSTGTPF-----VEGEPSQEFLD-LVSGYFESEEVMDYF 486
+G++DL TG+ + YI + T + + +P E L+S +E++D+
Sbjct: 177 NGVIDLRTGELRPGRPDEYILNAIVTEYDPELLRKDDPCPETNRFLLSSMDGDQELVDFI 236
Query: 487 TRCVGMALLGGNKAQRFIHIRGVGG-SGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545
R +G L+ + F + G G +GK TL+ L+ + G + +Q +
Sbjct: 237 WRLLGYGLITERRDHIFTIMWGEHGRNGKDTLIKLVTHVLGQTLSGDVPVEMFLQMQQTR 296
Query: 546 AGKA-NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604
A +P ++ L G + I+E E AK+K++TGG +TAR + +
Sbjct: 297 NSSAPSPDVLALRGMCVAWINEAEEGQRFALAKLKKLTGGGYITARGLQDKLQTTWLQTH 356
Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVI------------PFDKPIANRDASFAQKLETKYT 652
P + N+ + D A+W R ++I P+++P A++D + E K
Sbjct: 357 LPIMTTNELPKAKADDAAFWARAVLIKWPLSFVERPEQPYERP-ADKDLNEKIGAEAKGV 415
Query: 653 LEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCC 701
L ++G Y+ GL IP+ + E+R D ++ + C
Sbjct: 416 LAR---MVRGSMEYLRDGL--KIPDKVREWTREQRASWDDVGLFLSEWC 459
>gi|77463706|ref|YP_353210.1| hypothetical protein RSP_0135 [Rhodobacter sphaeroides 2.4.1]
gi|77388124|gb|ABA79309.1| conserved hypothetical protein [Rhodobacter sphaeroides 2.4.1]
Length = 479
Score = 67.8 bits (164), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 97/221 (43%), Gaps = 15/221 (6%)
Query: 416 SITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ---EFLDL 472
++T + D + +DL TG+ P E IT+ E +FL+
Sbjct: 136 AVTQEAWDRDPWLVACPGETVDLRTGRSAVPRPEDGITRRVAVAPAAQETCPTWWQFLED 195
Query: 473 VSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532
+G S VM + + G +L G + + + G GG+GKS +N + G+ Y
Sbjct: 196 ATGADSS--VMRFLQQWAGYSLTGITREHTLVFLYGDGGNGKSVFINTLTGLLGD-YAAT 252
Query: 533 AEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLN 592
A ++ + + L L G+R+V SET E ++IKQMTGGD +TAR
Sbjct: 253 AGMETFTASK---SDRHPTDLAMLAGARLVAASETEEGRAWAESRIKQMTGGDRITARFM 309
Query: 593 YGNTYSESPASFTPFIVPNKHLFVRN--PDDAWWRRYIVIP 631
+ ++ +P F +V N + N P + W +V+P
Sbjct: 310 RRDFFTYTP-QFKLTLVGNHRPALANVKPVEPW---ALVVP 346
>gi|168052394|ref|XP_001778635.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669953|gb|EDQ56530.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 456
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 95/217 (43%), Gaps = 33/217 (15%)
Query: 420 DLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFV----EGEPSQEFLDLVSG 475
+LL+S +G + G+ D + + + YIT ST PFV E + E LDL+S
Sbjct: 197 ELLNSRRDMIGMKGGVYDFTEDRFRRMEPDDYITLSTRIPFVPLDYNSEATNEVLDLLSK 256
Query: 476 YFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535
F V G +GK+ +++L++ AFG+ Y I
Sbjct: 257 IFSIWSVF--------------------------GDNGKTVMVSLVERAFGD-YAIKMLT 289
Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595
S +M R ++ A P L L I ++ E +E D++N +K++TG D + R Y
Sbjct: 290 SLLMGKRV-QSSAATPKLAMLKRRLIALVQEPDEGDKLNLGVMKELTGNDSLYIRELYEE 348
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF 632
+ P + ++ N+ + D A W R V+PF
Sbjct: 349 G-AVIPQTAKFVLIANRIPQMSTFDKAVWSRVRVMPF 384
>gi|153955845|ref|YP_001396610.1| hypothetical protein CKL_3236 [Clostridium kluyveri DSM 555]
gi|219856206|ref|YP_002473328.1| hypothetical protein CKR_2863 [Clostridium kluyveri NBRC 12016]
gi|146348703|gb|EDK35239.1| Phage-related protein [Clostridium kluyveri DSM 555]
gi|219569930|dbj|BAH07914.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 769
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 89/403 (22%), Positives = 163/403 (40%), Gaps = 35/403 (8%)
Query: 315 MFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPE 374
+F+ Y K Y + K W+ + IW T D +M S+ + + +
Sbjct: 324 LFADYYKSFARYVPERKMWFCYENG---IW--TPDIGNLKVMEMCKSLANQLLTYALTIQ 378
Query: 375 DNNKNSKS---PRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGE 431
D ++ R W + YR +++ A S++ I+ D + L
Sbjct: 379 DEHQRKAYIDYCRKWQSRRYRETVLKD------------AQSVYPISMAEFDQDPQVLNC 426
Query: 432 QDGILDLETGQKVKPTKELYITKSTGT---PFVEGEPSQEFL-DLVSGYFESEEVMDYFT 487
+G L L + E +TK +G P + E F+ +++SG EE +
Sbjct: 427 ANGTLFLTSMDFHPHNSEDRLTKISGVKYDPEAKSERWDRFIYEIMSG---DEEKAKFLQ 483
Query: 488 RCVGMALLGGNKAQRFIHIRGVGG-SGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEA 546
+ G ++ G + + + G +GK TL I G+ Y A I + +
Sbjct: 484 KAFGYSISGDTRYECLFVLYGATTRNGKGTLCESILKVLGS-YGCTARPETISLKKNNNS 542
Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
+ + RL G R V ISE + +NAA++K MTGGD + AR + N++ SP F
Sbjct: 543 SSPSEDIARLAGVRFVNISEPSRGLVLNAAQVKSMTGGDTINARFLHENSFDFSP-KFKL 601
Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEA-KKWFLKGV 663
+I N + + R ++IPF++ + +D + ++ A W ++G
Sbjct: 602 YINTNYLPVITDMTLFSSGRVVIIPFERHFDESEQDKNLKREFAKPKNQSAILNWLIEGY 661
Query: 664 KAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGEN 706
+ +GL +P+ A E ++ +D + +D + N
Sbjct: 662 QLLKKEGL--TLPDSVKTATEAYKRDSDKIALFFEDALEESPN 702
>gi|227544668|ref|ZP_03974717.1| possible ATPase [Lactobacillus reuteri CF48-3A]
gi|227185350|gb|EEI65421.1| possible ATPase [Lactobacillus reuteri CF48-3A]
Length = 207
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/210 (27%), Positives = 91/210 (43%), Gaps = 14/210 (6%)
Query: 565 SETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWW 624
+E E +N + +KQ+ D + A Y +S +P S T + N V D+ W
Sbjct: 2 AELEEGKRLNTSIVKQLCSTDEIYAEKKYMKPFSFTP-SHTIVLYTNYLPHVGGNDEGIW 60
Query: 625 RRYIVIPFDKPIANRD--ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKA 682
RR IVIPF IA R+ ++AQ L K +W ++G + I + + P KA
Sbjct: 61 RRLIVIPFKATIAKRNDIKNYAQYLTEKAGPAVLQWIIEGAQRTIQQNYRLTTPAAVEKA 120
Query: 683 KEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNL 742
D ++++ C++ ++S L + Y EY + Y R ST L
Sbjct: 121 VNAYHADNDWLGHFLNEKCELNPEYEQKSGDLYQKYREYCQGIGEYIR---STTDFYTAL 177
Query: 743 KQKGFIGGIKREKIEKEWKSKRIIKGLKLK 772
K GF K ++ R I+GL+LK
Sbjct: 178 KNAGFQRQHK--------QNGRFIEGLRLK 199
>gi|117926195|ref|YP_866812.1| hypothetical protein Mmc1_2915 [Magnetococcus sp. MC-1]
gi|117609951|gb|ABK45406.1| conserved hypothetical protein [Magnetococcus sp. MC-1]
Length = 765
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 53/180 (29%), Positives = 81/180 (45%), Gaps = 30/180 (16%)
Query: 14 IHNGFKLIPLRLGDKRPQRL--GKWE---------EQLLSSEKID---KLPACGFGFVCG 59
+ GF+++P+ G K P GKW E+ ++ ++ + P G G G
Sbjct: 14 VAAGFQILPIAPGKKYPGSYHQGKWSPYKGWNKHAERATTALELQVWKQWPGAGIGVPGG 73
Query: 60 VGEQPLYAFDIDSKDEKTANTFKDTFEILHG-TPIVRIGQKPKILIPFRMNK--EGIKKK 116
+ DID DE + + L G T VRIG+ PK L+ +R + +GIKK
Sbjct: 74 ----QVAGIDIDVADESVSLQLEQLAMRLFGETKAVRIGRAPKRLLVYRTDTPFKGIKKH 129
Query: 117 KTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHR-FKVEDTPLLSEEDVEYLFK 175
L++L GQ FVAY IHP T Y W K+ED P+++E+ + +
Sbjct: 130 P--------LEVLCLGQQFVAYAIHPDTGHPYQWINQELTDLKIEDLPVITEQQAHHFIE 181
>gi|294338996|emb|CAZ87341.1| putative Phage/plasmid primase P4, C-terminal [Thiomonas sp. 3As]
gi|294341823|emb|CAZ90252.1| putative Phage/plasmid primase P4, C-terminal [Thiomonas sp. 3As]
Length = 426
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 79/321 (24%), Positives = 130/321 (40%), Gaps = 36/321 (11%)
Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKV-KPT-KELYITKSTG 457
+ A++ +++ A S+FS L + + + Q G + L+ + V KP L +T
Sbjct: 60 ASAENARKAVRAASLFSPRLPKL-TDAVVVPTQSGYVHLDGAELVLKPADPSLGLTHCLD 118
Query: 458 TPFV-EGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKST 516
P+ EG F V V +G LL + QR G G +GK
Sbjct: 119 CPYAPEGVMPAHFAAFVQRVLPDPSVRARVQEYIGYTLLADARYQRAQFWLGEGANGKGV 178
Query: 517 LMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAA 576
L N+++ G+ I A A D + A L L+G+ +V + E I+
Sbjct: 179 LANVVQALHGH---IAAMALDQL---------AGFHLSVLVGASLVYVDEVPRK-PIDEQ 225
Query: 577 KIKQMTGGDCMTARLNYGNTYSESPASF---TPFIVPNKHL-FVRNPDDAWWRRYIVIPF 632
++K M G+ R+ Y E P S ++V HL + + +WRR+ V+PF
Sbjct: 226 RLKSMIAGE----RIPVDRKYRE-PLSIHVRGKWLVLGNHLPAISDHSSGFWRRWDVVPF 280
Query: 633 DKPIA--NRDASFAQKLETKYTLEAKKWFLKG-VKAYISKGLDVDIPEVCLKAKEEERQG 689
I RD AQ + + +W L G V+ G D +P +E +
Sbjct: 281 SVTIPERERDPLLAQTIVREELSGVLRWALDGLVRLQTRGGFDPVMPAAMQAMLQEAKAD 340
Query: 690 TDTYQAWIDD-------CCDI 703
T++ AW++D CD+
Sbjct: 341 TNSVVAWVEDLGVKLQLACDV 361
>gi|124486496|ref|YP_001031112.1| hypothetical protein Mlab_1684 [Methanocorpusculum labreanum Z]
gi|124364037|gb|ABN07845.1| phage/plasmid primase, P4 family [Methanocorpusculum labreanum Z]
Length = 606
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 102/448 (22%), Positives = 185/448 (41%), Gaps = 57/448 (12%)
Query: 294 HGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITA 353
G+L L + +D N F G+ +Y + W+ N+ W +K+
Sbjct: 103 RGQLPTPDALLNSLNDEGNAVRFEKEAGGNLVYDIASGQWFAFITNH---WEPAREKL-G 158
Query: 354 SIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGS 413
++ + E D + +N+ R N+ +N + + + GS
Sbjct: 159 KVLRLVGKSLEQELDYWKR-RAAAENTPEMRNLVVQLQNHVNLSKNHTKQVALRKMIEGS 217
Query: 414 IFSITSDLLDSS-SRFLGEQDGILDLETGQKVK-----PTKELYITKSTGTPFVEGEPSQ 467
S+ +L ++S R++ ++G LD TG+ + +E Y + G S
Sbjct: 218 --SMQVNLSEASDGRYITCKNGALDCRTGEFIPIWACDSIREKYPLIYLDAVYTPGLRSP 275
Query: 468 EFLDL--------VSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGVGGSG 513
F+D VSG E E + F R +G L GN Q I + G G +G
Sbjct: 276 AFIDHLKKVFDDNVSGLSEEERTLQMMELGRCFLRLLGYLLFPGNPEQVIIFLWGKGSNG 335
Query: 514 KSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEND-- 571
KST +++++ FG++ +EAS + + + + R + R+++ISE ++ +
Sbjct: 336 KSTTIDVLREIFGSEM---SEAS-VRELYAGSEDRPASGVARSLSKRVMLISEASDEESR 391
Query: 572 --EINAAKIKQMTGGDCMTARLNYGNTYSESPAS---FTPFIVPNK-HLFVRNPDDAWWR 625
I+A +K +T GD +T+R + + Y +S TP V N+ F + D A R
Sbjct: 392 GGRISADTVKALT-GDAVTSR--FRDMYEKSRPQRVVCTPVGVTNELPRFDKTLDYALLR 448
Query: 626 RYIVIPFDKPIAN-------RDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEV 678
R IPF A R+ A++ + +++ A + AY +GL + P
Sbjct: 449 RIFTIPFPHLFAGDERARDIRECLLAER-DAVFSMVADELI-----AYTKEGL-LPQPAF 501
Query: 679 CLKAKEEERQGTDTYQAWIDDCCDIGEN 706
C + E G + A+I++C + E
Sbjct: 502 CASTQNELLAGFEV-SAFIEECVEKSET 528
>gi|119487229|ref|ZP_01620980.1| hypothetical protein L8106_20932 [Lyngbya sp. PCC 8106]
gi|119455784|gb|EAW36919.1| hypothetical protein L8106_20932 [Lyngbya sp. PCC 8106]
Length = 842
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 70/290 (24%), Positives = 122/290 (42%), Gaps = 27/290 (9%)
Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPF-VEGEPSQEFLDLVSGYFESEEV 482
S + L +G+L++ + + V+ + Y+T + + E + + D + + +
Sbjct: 366 SPNEVLPHHNGVLEIASSKFVEHSPLNYLTWTLPREYDPEAKDWSKINDWLDEVSQGNPM 425
Query: 483 MDYFTRCVGMALLGGNKA-QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQN 541
+ C A+L G Q+ +H+ G+GGSGK+T NLI G V++ N
Sbjct: 426 IRNLLICFANAVLTGKSGIQKMMHLMGLGGSGKTTYSNLITDLIGENNVLDEGVEQFCTN 485
Query: 542 RPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESP 601
R + IR R V+ S+ E + N + I ++ GG+ +T G +
Sbjct: 486 R--------FTPIRAYQKRFVLFSDEQELPK-NISNIMKLVGGNNLTGE-QKGKPAFQFR 535
Query: 602 ASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD-----ASFAQKLE--TKYTLE 654
+ +V + + W RR I +P + +A++D A F +L T Y L
Sbjct: 536 FTGIAMLVSEHPIAQGIRGNGWKRRVIPLPMNLKVADKDRRDLRAEFQSELPAFTNYLLS 595
Query: 655 AKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDC--CD 702
F+ +S DIPE C + R D+ AW++DC CD
Sbjct: 596 LSDEFVTQTLRGVS-----DIPE-CKLQFWQSRLREDSIAAWLNDCIICD 639
>gi|148257830|ref|YP_001242415.1| putative phage / plasmid primase P4 [Bradyrhizobium sp. BTAi1]
gi|146410003|gb|ABQ38509.1| putative Phage / plasmid primase P4 [Bradyrhizobium sp. BTAi1]
Length = 624
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 96/231 (41%), Gaps = 13/231 (5%)
Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKST---LMNLIKYAFGNQYVINAEA 535
S ++ + R G AL G Q I G G + KST LM I + + +
Sbjct: 310 SADIRRFLQRYHGYALTGLTGEQCLIFNYGGGSNWKSTFVELMCRISGPYAQTIPFESIS 369
Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595
D+ ++ +A+P RL G R++ E + N + IK +TGG+ M R N+ +
Sbjct: 370 GDVQKS----GSQASPEFARLPGCRLLRAGEPDPNVQFKEGLIKSLTGGEPMLTRANFKD 425
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
+ P F + N + D WRR ++P+ IA+ + + + EA
Sbjct: 426 FFEFRP-DFKIVLSGNHKPKISGVDHGIWRRINLVPWGITIADHEKRPMPDVLAELMAEA 484
Query: 656 K---KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDI 703
W + G Y++ GL PEV + A R+ D A++ C +
Sbjct: 485 SGILNWLVAGTLNYLNGGLKPP-PEV-VAATAAYRERMDPVGAFVGQCVTV 533
>gi|51244031|ref|YP_063915.1| hypothetical protein DP0179 [Desulfotalea psychrophila LSv54]
gi|50875068|emb|CAG34908.1| hypothetical protein, probably cold-shock inducible [Desulfotalea
psychrophila LSv54]
Length = 652
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 74/330 (22%), Positives = 142/330 (43%), Gaps = 27/330 (8%)
Query: 451 YITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCV----GMALLGGNKAQRFIHI 506
Y T F + F ++ FE++E TR + G ++ + F+ +
Sbjct: 332 YRTSQIPVEFDPTATAPRFKQFLNEIFETDEDSQDKTRALLEMCGYTMVAHCSYELFVIL 391
Query: 507 RGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISE 566
G G +GKS ++L++ G + + + S NR + G L I++E
Sbjct: 392 IGTGANGKSVFLSLLEAIVGPKNTVGVQPSQF-DNRF-QRGHMRHKLAN-------IVTE 442
Query: 567 TNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRR 626
+ + I A++K + G+ T + + ++ P T + N R+ +A +RR
Sbjct: 443 IKQGEVIADAELKGIVSGEPSTVENKFKDPFTMRP-HVTCWFATNHMPHTRDFSEALFRR 501
Query: 627 YIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLD-VDIPEVCLKAKEE 685
+++ F++ ++ + + KL+ + E + AY + L+ P+ +AKEE
Sbjct: 502 ALILKFNRVFSDEEKN--PKLKDELFAELPGILNLALHAYANAVLNGFTKPDSSEQAKEE 559
Query: 686 ERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK 745
R D Q +++DCC+ ES +L ++Y + E N RK +S ++ L +
Sbjct: 560 WRLEADQVQQFVEDCCEKSPYEEIESSTLFRAYRSW--AETNGIRKMLSQKSFRDRLTRL 617
Query: 746 GFIGGIKREKIEKEWKSKRIIKGLKLKPAF 775
GF G KR K R++ G+ + F
Sbjct: 618 GF--GSKRN------KQARLVTGIAMANNF 639
>gi|320352359|ref|YP_004193698.1| phage/plasmid primase, P4 family [Desulfobulbus propionicus DSM
2032]
gi|320120861|gb|ADW16407.1| phage/plasmid primase, P4 family [Desulfobulbus propionicus DSM
2032]
Length = 538
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 75/180 (41%)
Query: 422 LDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEE 481
LD L +G++DL G + +TK+ +++ ++ V SE
Sbjct: 160 LDRQPMRLPCGNGVIDLTAGVLLDGDPADLMTKAIDVNYLKDADYTDWHKFVVEVCGSEA 219
Query: 482 VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQN 541
V ++ R G AL G + Q G G +GK L + I G Y + + + Q
Sbjct: 220 VANFLKRFFGYALTGHSYEQYIAVFIGGGRNGKGVLFSCIGSVLGPYYHVISPSMITEQR 279
Query: 542 RPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESP 601
P A+ L G R+V+ E+ I+A ++K +TG D + R N+G + P
Sbjct: 280 FDPSPNAASEHKYALHGKRLVVAGESKRGQRIDAGQVKGLTGDDKVECRPNFGKMFVFDP 339
>gi|320094352|ref|ZP_08026140.1| hypothetical protein HMPREF9005_0752 [Actinomyces sp. oral taxon
178 str. F0338]
gi|319978740|gb|EFW10295.1| hypothetical protein HMPREF9005_0752 [Actinomyces sp. oral taxon
178 str. F0338]
Length = 883
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 71/300 (23%), Positives = 123/300 (41%), Gaps = 31/300 (10%)
Query: 420 DLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFES 479
D D++ L +G++DL TG + T+ T P++ E S E +
Sbjct: 483 DEYDANPDILNVGNGVVDLRTGTLLPHAPSYRCTQYTPVPYLP-EASHEDWKAALAALPA 541
Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHI---RGVGGSGKSTLMNLIKYAFGNQYVINAEAS 536
E +F R VG A G + + G+G +GK+TL+ ++ A G Y A A
Sbjct: 542 ES-RPWFRRWVGQAATGYTPREDNTMLGIAAGIGANGKTTLLTAVRLALGT-YAGTA-AM 598
Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNT 596
D++ + P N + + L G R V+I E E ++ ++K +TG + + L + +
Sbjct: 599 DLLLSSP---RNTNNTKMALYGKRFVLIEELPEG-RLDGVQVKAVTGTELIRGNLKFKDE 654
Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF------------DKPIANRDASFA 644
+ E A+ + + N V + WRR V+ F D+P DA
Sbjct: 655 F-EWRATHSLIVTTNNLPTVSEFSEGLWRRPFVLEFPYRFTSNPQAEADRP---GDAGLT 710
Query: 645 QKL---ETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQAWIDDC 700
Q+L E+ W ++G + G V +P A ++ +D A+ +C
Sbjct: 711 QRLLAPESPALPAVLAWVVRGAVEFYEHGQQVGALPAPISSATASWQEQSDVLLAFASEC 770
>gi|217978348|ref|YP_002362495.1| P4 family phage/plasmid primase [Methylocella silvestris BL2]
gi|217503724|gb|ACK51133.1| phage/plasmid primase, P4 family [Methylocella silvestris BL2]
Length = 554
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/223 (25%), Positives = 94/223 (42%), Gaps = 8/223 (3%)
Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540
+V + + G++L G Q+ G G +GKS + I + G+ S +
Sbjct: 249 DVQIFLNQWAGLSLTGDTSEQKITFHYGKGRNGKSVWVKTISFVAGDYADSIPIESFLDS 308
Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR-LNYGNTYSE 599
R G+A P L L G R++ SE + ++ IK +GGD + AR LN G
Sbjct: 309 GRARAGGQATPDLAGLPGVRMLTTSEPKKGATLDEGLIKLFSGGDVIKARHLNKGFFAFT 368
Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK--PIANRDASFAQKLETKYTLEAKK 657
A T + N + D+ W R +++P+ P RD +KL + + +
Sbjct: 369 PQAKLT--MQGNYRPRITGADEGIWNRLVLVPWGVYFPADKRDPRLEEKLRGEASGVLNR 426
Query: 658 WFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDC 700
L G+ A++ GL IP A + R +D +++ C
Sbjct: 427 -LLDGLCAWLDGGL--RIPSSVAAATADYRSDSDPLGRFLEAC 466
>gi|153810987|ref|ZP_01963655.1| hypothetical protein RUMOBE_01378 [Ruminococcus obeum ATCC 29174]
gi|149832875|gb|EDM87958.1| hypothetical protein RUMOBE_01378 [Ruminococcus obeum ATCC 29174]
Length = 385
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 53/228 (23%), Positives = 106/228 (46%), Gaps = 22/228 (9%)
Query: 483 MDYFTRCVGMALLGGNKAQRF-IHIRGVGGSGKSTLMNLIKYAFGN-QYVINAEASDIMQ 540
++Y + G L G + F I +GKST+ L+ Y G+ I+ E+ I
Sbjct: 89 IEYLQKMSGRFLTGDTSEEEFYIFFGATTRNGKSTITELLLYLLGDYATTISPESLAIKV 148
Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600
N+ ++ A+P + +L G+R V+ SE +++ +K +TG D ++AR + N +
Sbjct: 149 NK--DSRTASPDIAKLAGTRFVVASEPPRRMLFDSSLVKTLTGRDTVSARFLHENEFQFK 206
Query: 601 P-------ASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTL 653
P +++ P ++ +K +F N R V+PF++ ++ + K + + +
Sbjct: 207 PKFKLILNSNYLP-VISDKTVFSSN-------RVKVVPFERHFTEKEQNKHLKEQLQQEI 258
Query: 654 EA-KKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDC 700
+ W ++G+ Y +GL+ P A E + +D +I +C
Sbjct: 259 DGILNWCIQGLSLYRKEGLEP--PTAVQIATHEYSEDSDKIGKFISEC 304
>gi|315606065|ref|ZP_07881096.1| phage/plasmid primase [Actinomyces sp. oral taxon 180 str. F0310]
gi|315312347|gb|EFU60433.1| phage/plasmid primase [Actinomyces sp. oral taxon 180 str. F0310]
Length = 897
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 68/302 (22%), Positives = 126/302 (41%), Gaps = 31/302 (10%)
Query: 418 TSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF 477
+ D D++ L +G++DL TG+ T T+ T P+ +++ ++
Sbjct: 495 SPDEYDANPDILNVGNGVVDLRTGELHPHTAAYRCTQYTPVPYRPAAIHKDWTAALAAL- 553
Query: 478 ESEEVMDYFTRCVGMALLGGNKAQRFIHI---RGVGGSGKSTLMNLIKYAFGNQYVINAE 534
E +F R VG A G + + G+G +GK+TL+ ++ A G Y A
Sbjct: 554 -PAESHPWFRRWVGQAATGYTPREDNTMLGIAAGIGANGKTTLLTAVRLALGT-YAGTA- 610
Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
A D++ + P N + + L G R V+I E E ++ ++K +TG + + L +
Sbjct: 611 AMDLLLSSP---RNTNNTKMALYGKRFVLIEELPEG-RLDGVQVKAVTGTELIRGNLKFK 666
Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF------------DKPIANRDAS 642
+ + E A+ + + N V + WRR V+ F D+P DA
Sbjct: 667 DEF-EWRATHSLIVTTNNLPTVSEFSEGLWRRPFVLEFPYRFTSNPQAEADRP---GDAG 722
Query: 643 FAQKL---ETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQAWID 698
Q+L ++ W ++G + + G V +P A ++ +D A+
Sbjct: 723 LTQRLLAPDSPALPAVLAWVVRGAVEFYAHGQQVGALPAPISSATASWQEQSDVLLAFAS 782
Query: 699 DC 700
+C
Sbjct: 783 EC 784
>gi|255018276|ref|ZP_05290402.1| phage/plasmid primase, P4 family protein [Listeria monocytogenes
FSL F2-515]
Length = 284
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 81/172 (47%), Gaps = 4/172 (2%)
Query: 410 EAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF 469
EA + + + D + F Q+G +DL++G+ + + TK + + + + +
Sbjct: 106 EAEHLMPVLPEQFDVNKHFFNTQNGYIDLKSGRLNEHDRSKMFTKISHIEYTDKIDAPLW 165
Query: 470 LDLVSGYFESE-EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528
+ F+ + E++DY + VG +L G Q + G G +GKS +++I FG+
Sbjct: 166 NSFLLDIFDHDKELIDYVQKAVGYSLTGSTSEQVMFILFGNGRNGKSVFLDIINDVFGS- 224
Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQ 580
Y N + IM + ++ AN + RL +R V +E NE ++ IK
Sbjct: 225 YSTNIQPQTIMVKQ--QSSGANSDIARLHAARFVTTTEPNEGVRLDEGXIKH 274
>gi|148543897|ref|YP_001271267.1| P4 family phage/plasmid primase [Lactobacillus reuteri DSM 20016]
gi|184153296|ref|YP_001841637.1| phage DNA primase [Lactobacillus reuteri JCM 1112]
gi|227364805|ref|ZP_03848853.1| P4 family phage/plasmid primase [Lactobacillus reuteri MM2-3]
gi|325682570|ref|ZP_08162087.1| phage/plasmid primase [Lactobacillus reuteri MM4-1A]
gi|148530931|gb|ABQ82930.1| phage/plasmid primase, P4 family [Lactobacillus reuteri DSM 20016]
gi|183224640|dbj|BAG25157.1| phage DNA primase [Lactobacillus reuteri JCM 1112]
gi|227070149|gb|EEI08524.1| P4 family phage/plasmid primase [Lactobacillus reuteri MM2-3]
gi|324978409|gb|EGC15359.1| phage/plasmid primase [Lactobacillus reuteri MM4-1A]
Length = 463
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 80/291 (27%), Positives = 123/291 (42%), Gaps = 30/291 (10%)
Query: 490 VGMALLGGNKA-QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGK 548
+G AL G K Q ++ + G+GG GKST +N + G V N + + EA
Sbjct: 194 IGFALAGSFKDFQIYMILYGLGGDGKSTFLNKLMELIGKPNVSNVSLEALSDQK--EAKF 251
Query: 549 ANPSLIRLMGSRIVIIS-ETNENDEINAAKIKQMTGGDCMTARLNYGNTY---SESPASF 604
A L + IS + E I IK +TGGD TA+ Y + + +E+ F
Sbjct: 252 ATSQLYHKAANVFADISPKFMEQTNI----IKTLTGGDATTAQFKYKDPFKLENEAKLIF 307
Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVK 664
+ +P + F D + RR I++ F K I + F E + E + + +K
Sbjct: 308 SANDLPAFNDFT----DGFKRRPIIVTFHK-IKHFKEQFK---EQDFKREMPAFAYECLK 359
Query: 665 AYISKGLD---VDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEY 721
+Y K LD + E + K D WI+DCC EN E+S L +Y EY
Sbjct: 360 SY-KKALDSGKFPVTEYMEQQKRSWVNANDNIGNWINDCCTTNENDKEKSVYLYGNYKEY 418
Query: 722 REQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLK 772
+ N +S R L +G+ K ++ K+ + KG+ LK
Sbjct: 419 CK---NTAVPCLSNRKFAKELIARGY----KHTTVKINGKNVKGYKGIALK 462
>gi|282164445|ref|YP_003356830.1| hypothetical protein MCP_1775 [Methanocella paludicola SANAE]
gi|282156759|dbj|BAI61847.1| hypothetical protein [Methanocella paludicola SANAE]
Length = 439
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 73/302 (24%), Positives = 128/302 (42%), Gaps = 25/302 (8%)
Query: 410 EAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKV--KPTKELYITKSTGTPFVEGEPS- 466
EA +F +DL D +SR + +G+LDL+ G + + TKE+Y T + +P
Sbjct: 127 EATGLFIKKNDL-DKNSRMINCLNGVLDLDKGTLIHHEQTKEMYFTHIYNVKY---DPEA 182
Query: 467 -----QEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLI 521
+FL+ ++ E ++ Y +G + G Q +G G +GK L ++I
Sbjct: 183 ICPLFDKFLNEITC--EDADLKKYLLTSLGYCISGRTDKQLAFIFKGAGRNGKGVLRDVI 240
Query: 522 KYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM 581
++ + Y I + G+ L + RI+ ++E + N A IKQ
Sbjct: 241 EHIL-DGYAIEKPGKVFSKKHE---GEGRFDLYDTIEKRIIFVNEPADGSAFNEALIKQY 296
Query: 582 TGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDA 641
GGD + A Y + + P T I+ N + N A RR VIPF+ I + +
Sbjct: 297 AGGDMIPAERKYCDPFMFKPCG-TLIILTNTTPKM-NKSLAMSRRIRVIPFNLNIDDEND 354
Query: 642 SFAQKLETKYTLEAKKWFLKGVKAYISKGLDV---DIPEVCLKAKEEERQGTDTYQAWID 698
+L+ K E + ++ Y+S + ++ E A E+ D A+++
Sbjct: 355 DV--ELKDKLLKEISGILNRLIEGYMSCDGEANPKNMVEAVADATEDVWNEADMVAAFVN 412
Query: 699 DC 700
C
Sbjct: 413 TC 414
>gi|240142182|ref|YP_002966692.1| hypothetical protein MexAM1_META2p0504 [Methylobacterium extorquens
AM1]
gi|240012126|gb|ACS43351.1| Hypothetical protein MexAM1_META2p0504 [Methylobacterium extorquens
AM1]
Length = 1438
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 87/201 (43%), Gaps = 31/201 (15%)
Query: 10 AKQAIHNGFKLIPLRL-GDKR-PQRLG----KWEEQLLSSEKIDK----------LPACG 53
A++ + NG+ + P + GD+R P R+ KW E E++ + PA
Sbjct: 46 ARELVANGWAVYPQEIYGDRRLPGRIRREVIKWREDHRLDERLPRPEALEEWIRWCPAHN 105
Query: 54 FGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFE-ILHGTPIVRIGQKPKILIPFR----- 107
V G G ++ DID DE + + E IL TP+ R+G PK+ + FR
Sbjct: 106 VALVLGRGSGDAFSVDIDVLDELLSYDIRRLAEDILGATPLRRVGNAPKVALFFRWASPE 165
Query: 108 ----MNKEGIK-KKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTW-TTPPHRFKVED 161
+ + K + T + LDIL + Y H +T + ++W P + ED
Sbjct: 166 EAHKLQRTAFKFRDATGRGREQGLDILNYAKSVTIYGRHHRTGRNFSWEADTPLTTRPED 225
Query: 162 TPLLSEEDVEYLFKFFQEITV 182
P ++ EDV+ +F + V
Sbjct: 226 LPAVTAEDVQ---RFVDAVDV 243
>gi|114566987|ref|YP_754141.1| hypothetical protein Swol_1465 [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
gi|114337922|gb|ABI68770.1| conserved hypothetical protein [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
Length = 770
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 83/423 (19%), Positives = 171/423 (40%), Gaps = 44/423 (10%)
Query: 315 MFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPE 374
+F+ + + Y + K W+ +W + A M + + + ++ + E +
Sbjct: 325 IFADFFQDRLRYVPERKMWFHYANG---VWQPDTGNLCA--MKYCMDLANLMYTFALEIK 379
Query: 375 DNNKNSKSPRFW--FNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQ 432
D +K ++ + + R N+ ++++ + GS D+ +
Sbjct: 380 DEDKRKSYMKYASRWQSHSNRVNILKDAQVH---HPISYGS--------FDADIYIFNCK 428
Query: 433 DGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESE-EVMDYFTRCVG 491
+G L ++TG+ + +TK + + S F + + + + + +G
Sbjct: 429 NGTLHIDTGEFTEHRSTDLLTKKSPVVYDPMAYSGRFASYIDEIMSGDADRAKFLQKILG 488
Query: 492 MALLGGNKAQRFIHIRGVGG-SGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKAN 550
L G + + + GV +GK TL + G+ Y + I + +
Sbjct: 489 YGLTGDTRHECMTILYGVTTRNGKGTLCESVLKVLGD-YGCASRPETIAMKSYTNGSQPS 547
Query: 551 PSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESP-------AS 603
+ RL G R V I E + ++AAK+K MTG D + AR + N++ P A+
Sbjct: 548 EDVARLAGVRFVNIPEPGKGMVLDAAKVKAMTGNDTLNARYLHENSFDFQPQFKIYVNAN 607
Query: 604 FTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEA-KKWFL 660
F P ++ + LF + R I+IPFD+ +RD + ++ + A W L
Sbjct: 608 FLP-VINDMTLFSSD-------RIIIIPFDRHFDEHSRDTTLKRRFAEEDVQSAILNWLL 659
Query: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSE 720
+G + ++GL +P+ A E + +D + +D + ++ E A+ Y+
Sbjct: 660 EGYRLLQTEGL--FLPKSVKDATERYQHDSDKMALFFEDSL-VADDTAEV--MTARVYAR 714
Query: 721 YRE 723
Y+E
Sbjct: 715 YKE 717
>gi|218290889|ref|ZP_03494953.1| phage/plasmid primase, P4 family [Alicyclobacillus acidocaldarius
LAA1]
gi|218239156|gb|EED06358.1| phage/plasmid primase, P4 family [Alicyclobacillus acidocaldarius
LAA1]
Length = 1061
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 73/290 (25%), Positives = 132/290 (45%), Gaps = 37/290 (12%)
Query: 471 DLVSGYFESEEVMDYFTRCVGMALLGGN-KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529
DL + SEE +G +L + QR+ + G G +GK TL+ L++ FG ++
Sbjct: 707 DLFREFDLSEETTTALFEAIGYSLAKFDVDEQRYFVLLGPGYNGKGTLLRLLESIFG-KF 765
Query: 530 VINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTA 589
V ++++NR + RL + I I+++ + + IK++TG D +TA
Sbjct: 766 VETVTLQELVENRFAAS--------RLARASINIVADASNQTLKDTETIKKLTGNDLLTA 817
Query: 590 RLNYGNTYSESPASFTPFI---VPNKHLFVRNPDDA--WWRRYIVIPFDKPIANRDASFA 644
+ Y + + F P I + + HL PD + ++RR ++ PF + + + A +
Sbjct: 818 EMKYRDAF-----PFRPRIKLWMASNHL-PPTPDGSFGFFRRPLIFPFHRQLPMKPADWE 871
Query: 645 QKLETKYTLEAKKWFLK-GVKAYI---SKGLDVDIPEVCLKAKEEERQGTDTYQAWID-- 698
++L T EAK + L VK Y+ ++G + + L+A+ + D QA I
Sbjct: 872 KRLRTP---EAKSYLLYLAVKHYLNMRAEGRKLTESKEMLRARMDYWAANDIVQAAIQYG 928
Query: 699 -----DCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLK 743
D + + +LA E +EL RK++ST T+ L+
Sbjct: 929 IFEFPDSQNKDRKDYVVPRALATKAIELFAEELG--RKKVSTNTLLERLR 976
>gi|186684989|ref|YP_001868185.1| helicase superfamily protein [Nostoc punctiforme PCC 73102]
gi|186467441|gb|ACC83242.1| Helicase superfamily 3 [Nostoc punctiforme PCC 73102]
Length = 715
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 109/242 (45%), Gaps = 21/242 (8%)
Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELY----ITKSTGTPFVEGEPSQEFLDL 472
+ +D ++ S+ L ++G+LDL+T + + + Y I + + ++++D
Sbjct: 356 LCNDFVEPSNHLLPFKNGVLDLKTNKLILHSPNHYFRNIIDREHDHKATDWGEIEKWMDF 415
Query: 473 VSGYFESEEVMDYFTRCVGMALLGGN-KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVI 531
V FE+ + C A+L G K RF I G+GG+GKST M L G ++
Sbjct: 416 V---FENNPSQKHLLICWYAAVLRGMWKLHRFALIIGLGGTGKSTAMKLAIALIGKRFSH 472
Query: 532 NAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARL 591
+ + + N+ A + R+V I++ + N +K +TGGD +
Sbjct: 473 SLTITALNNNQFQTA--------NIYDKRLVCINDADRYRG-NLEILKNITGGDEINIEQ 523
Query: 592 NYGNTYSESPASFTPFIVPNKHLFVRNPDDAWW-RRYIVIPFDKPIANRDASFAQKLETK 650
Y +S A + ++ + FV + D+ RR I+ FD+ + N D F +KL +
Sbjct: 524 KYERAFS---AVYKGMVMITANNFVFSAHDSGLDRRMILFKFDRQLPNIDTIFLEKLTAQ 580
Query: 651 YT 652
+
Sbjct: 581 IS 582
>gi|205374882|ref|ZP_03227674.1| primase, putative [Bacillus coahuilensis m4-4]
Length = 538
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 71/318 (22%), Positives = 133/318 (41%), Gaps = 32/318 (10%)
Query: 422 LDSSSRFLGEQDGILDLETGQKVKPTK-------ELYITKSTGTPFVEGEPSQEFLDLVS 474
++S++ + ++G+LD+ + K K ++ P +G+ +FLD
Sbjct: 189 INSNNNMINLKNGLLDISDNENWKFIKGHNPEHLSTIQIQANYNPEAKGKEFHKFLD--- 245
Query: 475 GYFESEEVMDYFTRCVGMALLGGNKAQRFIHI-RGVGGSGKSTLMNLIKYAF-GNQYVIN 532
++V VG L +++ I I G G SGKST +N A G+ +
Sbjct: 246 SSVPDKQVQVLLQEMVGYCLTPFVTSKQMIFILTGQGDSGKSTFLNATLEALVGDNAKSH 305
Query: 533 AEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLN 592
D+ N +A L G + I ++ + + +K TG D +TAR
Sbjct: 306 VALQDLDGNEYNQA--------ELFGKIVNIFADLPDKPLKDIGYLKAATGKDWITAR-- 355
Query: 593 YGNTYSESPASF---TPFIVPNKHL---FVRNPDDAWWRRYIVIPFDKPIANRDASFAQK 646
++P F F+ L F ++ DA++ R +IPF++ I +D QK
Sbjct: 356 ---RIRQAPFQFKNKAKFVYSANDLPSNFSKDSTDAFYNRLTLIPFNQKITKKDPYLEQK 412
Query: 647 LETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGEN 706
LE + A W L+G++ IS G + + K E ++ ++ ++++ C++
Sbjct: 413 LEKEIDYIA-YWALQGLQRLISNGFKFSENQKSNELKAEYKKNSNPVMVFVEEYCELSSE 471
Query: 707 LWEESHSLAKSYSEYREQ 724
SL ++ + EQ
Sbjct: 472 NETPRVSLWTAWQNFCEQ 489
>gi|328543326|ref|YP_004303435.1| Gp33 [polymorphum gilvum SL003B-26A1]
gi|326413072|gb|ADZ70135.1| Gp33 [Polymorphum gilvum SL003B-26A1]
Length = 779
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 66/152 (43%), Gaps = 21/152 (13%)
Query: 133 QYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSII 192
Q A ++HP+T + Y R ++ + P SE+ L + ++++V
Sbjct: 173 QVVAAGSVHPETGRLYALDDDVLRMELSEAPEASEK----LLRAIEKLSVGA-------- 220
Query: 193 PSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARR 252
+ N + + T ++ LS YNG HDEW+ V+MA HH T G + +A
Sbjct: 221 -----SENRSGEITAEQLARLLSKLDVMAYNGRHDEWLKVMMASHHGTAGEGVDEFVA-- 273
Query: 253 WSKQGSTY--DEENFNYKWDTFDFEEIGDTAK 282
WS Y DE +W++ D G T K
Sbjct: 274 WSTSDPDYAGDEARIRERWNSLDTRRGGVTLK 305
>gi|126660109|ref|ZP_01731229.1| hypothetical protein CY0110_30895 [Cyanothece sp. CCY0110]
gi|126618629|gb|EAZ89378.1| hypothetical protein CY0110_30895 [Cyanothece sp. CCY0110]
Length = 1031
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 84/354 (23%), Positives = 145/354 (40%), Gaps = 57/354 (16%)
Query: 315 MFSIYKKGHFLYTADTKAWYKKDKNNVYIWSL-TLDKITASIMNFLVSMKEDVFDLSEEP 373
+ S+YK +Y TK WY + IW L T +++ +M L + + +S++
Sbjct: 329 LASLYKD-RLIYEGTTKDWYLYNAEKEGIWDLITKERLEQRLMLELDGLVDKAETISQQI 387
Query: 374 E---------DNNKNSKS----------PRFWFNTDYRRQNVEENSKAKSTAQSLEAGSI 414
+ + +++ KS P+ +DY+ VE K S +
Sbjct: 388 QTAISAVKGSNRDRSQKSELIEQLKAQIPKI---SDYKFTFVEAIGKRLS--------RV 436
Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTG---TPFVEGEPSQEFLD 471
+ +S + ++G+LDLET + + Y+T P P +++L
Sbjct: 437 LLVNEMSTNSQKGLIPFRNGVLDLETRELWPHSPTNYLTWCLPYDYNPLASCNPIKQWL- 495
Query: 472 LVSGYFESEEVMDYFTRCVGMALLGGNKA-QRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530
E +E + R ++ G Q+F+ + G GGSGKSTL L G + V
Sbjct: 496 --LEMMEGDETLVNLIRAYLHGIVTGRADWQKFLALCGPGGSGKSTLTKLAIALVGAENV 553
Query: 531 INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR 590
+ DI++ E + R+VII+E + K+K +TGGD R
Sbjct: 554 -HVTDLDILEKDKFETAN-------IKDKRLVIINEATSYRGVK--KLKALTGGD----R 599
Query: 591 LNYGNTYSESPASFTP----FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD 640
L + Y ++ ASF P I N+ + + +RR I + ++ IA RD
Sbjct: 600 LRFEQKYKQALASFYPDALVIITSNEPIKTGDHTSGLYRREIPLSMNRRIAERD 653
>gi|148555111|ref|YP_001262693.1| P4 family phage/plasmid primase [Sphingomonas wittichii RW1]
gi|148500301|gb|ABQ68555.1| phage/plasmid primase, P4 family [Sphingomonas wittichii RW1]
Length = 955
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/240 (25%), Positives = 109/240 (45%), Gaps = 8/240 (3%)
Query: 485 YFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544
Y + G++L G Q+ G GG+GK T++N + G+ Y + + P
Sbjct: 637 YLHQWGGLSLTGETGEQKLHFWHGGGGNGKGTVLNAWCHVAGD-YFASVSIETFLDQGPK 695
Query: 545 EAG-KANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPAS 603
++G KA P L +L G R++ +SE E ++ A IK +TG D ++ R + + P
Sbjct: 696 KSGDKATPDLAKLPGVRLLRVSEPEERAQLAEALIKLVTGQDPLSVRHLHKGFFEFLP-H 754
Query: 604 FTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEAKKWFLK 661
F I+ N L +R D WRR +IP+D I A++D + +L+ + + +K
Sbjct: 755 FKLTIMGNHWLGIRGTDKGIWRRVKLIPWDASIDDADKDETLPDQLKAEASGILNH-MIK 813
Query: 662 GVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEY 721
G+ ++ GL P +A R+ +D ++ C + +S L Y +
Sbjct: 814 GLLDWMRNGLIE--PRSVTQATAAYREASDPLGRFLALCVRPAQGKRVQSSRLHAVYEAW 871
>gi|221213691|ref|ZP_03586665.1| phage/plasmid primase, P4 family [Burkholderia multivorans CGD1]
gi|221166480|gb|EED98952.1| phage/plasmid primase, P4 family [Burkholderia multivorans CGD1]
Length = 487
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 90/192 (46%), Gaps = 15/192 (7%)
Query: 397 EENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKST 456
E N K + + ++++ LD ++G++DL TG+ + L+IT++
Sbjct: 297 ESNKALKDAVELFRSEPGIAVSASNLDEGEWMFPAKNGLVDLRTGKFMPMDPALHITQTA 356
Query: 457 GTPFVEGE--PSQE--FLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGS 512
G F P E L++++G + E+++Y R +G L G G +
Sbjct: 357 GVNFDPDATCPRWEAFLLEIMNG---NVELVEYLRRAIGYTLTCQTSEHALFFAFGSGAN 413
Query: 513 GKSTLMNLIKYAFGNQYVINAEASD--IMQNRPPEAGKANPS---LIRLMGSRIVIISET 567
GKST +NL++ FG+ + A+A+ ++ +A +N S + RL+G R+V +SE
Sbjct: 414 GKSTFLNLLRALFGD---LGAQANGDMLLDKNGGQAMSSNASSSEVARLVGKRLVAMSEV 470
Query: 568 NENDEINAAKIK 579
E + +K
Sbjct: 471 EEGRHFSEKTVK 482
>gi|168032336|ref|XP_001768675.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162680174|gb|EDQ66613.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 419
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/170 (30%), Positives = 81/170 (47%), Gaps = 8/170 (4%)
Query: 420 DLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFV----EGEPSQEFLDLVSG 475
+LLDS +G + G+ D + + YIT ST FV E + E LDL++
Sbjct: 119 ELLDSKRDVIGMKSGVYDFTEDRFRMMELDDYITLSTRISFVPLDYNSEATNEVLDLLAK 178
Query: 476 YFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535
F +E++ YF R + L G N + F G G + K+ +++LI+ FG+ Y I
Sbjct: 179 VFSNEDIRRYFMRFISSCLEGRNTNKIFSIWSGSGDNRKTIMVSLIEQVFGD-YAIKMPT 237
Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGD 585
S +M+ R E + +R + II +T + I A +I QM+ D
Sbjct: 238 SLLMEKR--EITGNDSLYVRGLYKEGTIIPQTAKFILI-ANRIPQMSMFD 284
>gi|254521909|ref|ZP_05133964.1| primase, putative [Stenotrophomonas sp. SKA14]
gi|219719500|gb|EED38025.1| primase, putative [Stenotrophomonas sp. SKA14]
Length = 549
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 79/319 (24%), Positives = 123/319 (38%), Gaps = 43/319 (13%)
Query: 473 VSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532
V G + C+ A L + G G +GKSTL+++++ +
Sbjct: 221 VRGLLQEAMASSVMPMCLEKAFL----------LLGSGSNGKSTLLHVLRAIHPKNTAVR 270
Query: 533 AEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLN 592
+ D P A K + L ++S D I +K + D M+A
Sbjct: 271 IDKLDGQFAMAPLASKT----LYLATEAPKVLS-----DPIQQV-LKALISRDPMSAENK 320
Query: 593 YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA----NRDASFAQKLE 648
+ Y+ P T F+ N V + + +WR+ +IPF+ +A +RD F +KL
Sbjct: 321 GKDAYTTVPRG-TLFLALNAMFSVTSHEHGFWRKICMIPFNVRLAENDKDRDPDFHKKLT 379
Query: 649 TKYTLEAK--KWFLKGVKAYISK-GLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDI-G 704
A W L+G I + GL ++PE E+ RQ TDT ++ + I
Sbjct: 380 EDPAEMAVIIDWLLEGAMRLIERGGLPEEMPEAVKALAEQTRQETDTTASYFAERMVIEE 439
Query: 705 ENLWEESHSLAKSYSEYREQELNYDR-------KRISTRTVTLNLKQKGFIGGIKREKIE 757
E W + + + Y Y EL KR+ R L KQK G K E+
Sbjct: 440 EGTWTDKNDIYADYRNYVLDELGRKPVGAEELWKRVRERMPGLQQKQKKATKGSKAER-- 497
Query: 758 KEWKSKRIIKGLKLKPAFE 776
W + R+ LKP E
Sbjct: 498 --WVNLRVG---GLKPRLE 511
>gi|297172230|gb|ADI23209.1| predicted ATPase [uncultured Gemmatimonadales bacterium
HF0770_11C06]
Length = 352
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 87/213 (40%), Gaps = 14/213 (6%)
Query: 491 GMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKAN 550
G L+ + Q F+ + G G +GKS L+ +K+ G++ + +
Sbjct: 86 GYCLVLDHSQQVFVIVVGDGANGKSVLLQTLKHLVGHKNCSSVALENF---------DGR 136
Query: 551 PSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVP 610
L +G + I+SE + ++ K+K GD MT + +P + F
Sbjct: 137 FDLAMTIGKLVNIVSEIGDVAKLPEGKLKAFVSGDLMTFDRKHREPLQVNPTARLVFAT- 195
Query: 611 NKHLFVRNPDDAWWRRYIVIPFDKPIANRDA--SFAQKLETKYTLEAKKWFLKGVKAYIS 668
NK + D WRR+I +P D +A RD + QKL+T+ W G++
Sbjct: 196 NKLPTFADRSDGLWRRFIPLPCDATVAPRDQDRALPQKLQTELP-GILNWAAAGLRRLRK 254
Query: 669 KGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCC 701
+G ++PE + E R + + D C
Sbjct: 255 RGY-FEVPEASRRLLAEHRGASQPELIFFADHC 286
>gi|257793137|ref|YP_003186534.1| phage/plasmid primase, P4 family [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
gi|257479829|gb|ACV60145.1| phage/plasmid primase, P4 family [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
Length = 1061
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 71/290 (24%), Positives = 131/290 (45%), Gaps = 37/290 (12%)
Query: 471 DLVSGYFESEEVMDYFTRCVGMALLGGN-KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529
DL + SEE +G +L + QR+ + G G +GK TL+ L++ FG ++
Sbjct: 707 DLFREFDLSEETTTALFEAIGYSLAKFDVDEQRYFVLLGPGYNGKGTLLRLLESLFG-KF 765
Query: 530 VINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTA 589
V ++++NR + RL + I I+++ + + IK++TG D +TA
Sbjct: 766 VETVTLQELVENRFAAS--------RLARASINIVADASNQTLKDTETIKKLTGNDLLTA 817
Query: 590 RLNYGNTYSESPASFTPFI---VPNKHLFVRNPDDA--WWRRYIVIPFDKPIANRDASFA 644
+ Y + + F P I + + HL PD + ++RR ++ PF + + + A +
Sbjct: 818 EMKYRDAF-----PFRPRIKLWMASNHL-PPTPDGSFGFFRRPLIFPFHRQLPMKPADWE 871
Query: 645 QKLETKYTLEAKKWFLK-GVKAYI---SKGLDVDIPEVCLKAKEEERQGTDTYQAWID-- 698
++L T EAK + L +K Y+ ++G + + L+ + + D QA I
Sbjct: 872 RRLRTP---EAKSYLLYLAIKHYLNMRAEGRKLTESKEMLRTRMDYWAANDIVQAAIQYG 928
Query: 699 -----DCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLK 743
D + + +LA E +EL RK++ST T+ L+
Sbjct: 929 IFEFPDSQNKDRKDYVVPRALATKAIELFAEELG--RKKVSTNTLLERLR 976
>gi|251810225|ref|ZP_04824698.1| DNA primase-phage associated protein [Staphylococcus epidermidis
BCM-HMP0060]
gi|251806277|gb|EES58934.1| DNA primase-phage associated protein [Staphylococcus epidermidis
BCM-HMP0060]
Length = 455
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 67/287 (23%), Positives = 118/287 (41%), Gaps = 23/287 (8%)
Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPS---QEFLDLVSGYFESEE 481
S+R++G ++GI D + + + YIT F E S + F+ +S + EE
Sbjct: 99 SARYIGLKNGIYDTIEEKLNSFSPQYYITNIIDVDFNEQAQSDLIERFIKDISN--DDEE 156
Query: 482 VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQN 541
V +G L N Q GG+GK+TL+ L+ + + + +D+
Sbjct: 157 VEQLIYEMIGYGLYRDNFLQVAFFYYSPGGNGKTTLLKLLHHFYNPENTTALSFNDLNDK 216
Query: 542 RPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESP 601
P AN L G + I + + N + K + G+ +T + + P
Sbjct: 217 FKP----AN-----LQGKLVNIADDIDPNRIKDTGNFKIIVTGNYITLEFKGQDAFEFKP 267
Query: 602 ASFTPFIVPNKHLFVRN-PDDAWWRRYIVIP----FDKPIANRDASFAQKLETKYTLEA- 655
+ I + L + N + ++RR ++IP F K +D KL T Y + A
Sbjct: 268 --YVKLIFASNELPMSNDKSEGFYRRMVIIPMLRKFGKGGQKKDPMLLNKLITPYNMSAL 325
Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCD 702
LKG+K + ++ P++ K KEE + + +I+D D
Sbjct: 326 LNLALKGLKRTLENNEIIE-PKIARKTKEEYQFDNNPVLQFIEDATD 371
>gi|284175976|ref|ZP_06389945.1| primase (carboxy-end fragment) [Sulfolobus solfataricus 98/2]
Length = 523
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 72/149 (48%), Gaps = 16/149 (10%)
Query: 489 CVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGK 548
+G L + ++ I G G+GKST +NLIK G V+N + + K
Sbjct: 171 IIGYTLFPKIEFRKAFMILGPRGTGKSTFINLIKKLLGRGNVVNIPLHILFGD------K 224
Query: 549 ANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPF- 607
L L + +SET E + + +K +TGGD +TA + + + P +FTP+
Sbjct: 225 NRFVLAELYHKLVNAVSETKEYNLDDMDTLKVLTGGDRITADVKF-----KDPITFTPYA 279
Query: 608 ---IVPNKHLFVRNPDD-AWWRRYIVIPF 632
I NK +R+ +D A+W R+++I F
Sbjct: 280 KLVIASNKPPTIRDKNDMAFWHRWLIIEF 308
>gi|15897095|ref|NP_341700.1| primase (carboxy-end fragment) [Sulfolobus solfataricus P2]
gi|13813270|gb|AAK40490.1| Primase (Carboxy-end fragment) [Sulfolobus solfataricus P2]
Length = 532
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 44/149 (29%), Positives = 72/149 (48%), Gaps = 16/149 (10%)
Query: 489 CVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGK 548
+G L + ++ I G G+GKST +NLIK G V+N + + K
Sbjct: 180 IIGYTLFPKIEFRKAFMILGPRGTGKSTFINLIKKLLGRGNVVNIPLHILFGD------K 233
Query: 549 ANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPF- 607
L L + +SET E + + +K +TGGD +TA + + + P +FTP+
Sbjct: 234 NRFVLAELYHKLVNAVSETKEYNLDDMDTLKVLTGGDRITADVKF-----KDPITFTPYA 288
Query: 608 ---IVPNKHLFVRNPDD-AWWRRYIVIPF 632
I NK +R+ +D A+W R+++I F
Sbjct: 289 KLVIASNKPPTIRDKNDMAFWHRWLIIEF 317
>gi|70727094|ref|YP_254008.1| putative DNA primase-phage associated [Staphylococcus haemolyticus
JCSC1435]
gi|68447818|dbj|BAE05402.1| putative DNA primase-phage associated [Staphylococcus haemolyticus
JCSC1435]
Length = 455
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 65/287 (22%), Positives = 119/287 (41%), Gaps = 23/287 (8%)
Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPF---VEGEPSQEFLDLVSGYFESEE 481
S+R++G ++GI D + + + YIT F + + ++F+ +S E EE
Sbjct: 99 SARYIGLKNGIYDTLEEKLKSFSPQYYITNIIDVDFDKDAQSDLIEKFIKDISN--EDEE 156
Query: 482 VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQN 541
V +G L N Q GG+GK+TL+ L+ + + + +D+
Sbjct: 157 VEQLIYEMIGYGLYRDNFLQVAFFYYSPGGNGKTTLLKLLHHFYNPENTTALSFNDLNDK 216
Query: 542 RPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESP 601
P AN L G + I + + N + K + G+ +T + + P
Sbjct: 217 FKP----AN-----LQGKLVNIADDIDPNRIRDTGNFKIIVTGNYITLEFKGQDAFEFKP 267
Query: 602 ASFTPFIVPNKHLFVRN-PDDAWWRRYIVIP----FDKPIANRDASFAQKLETKYTLEA- 655
+ I + L + N + ++RR ++IP F K +D KL T + + A
Sbjct: 268 --YVKLIFASNELPMSNDKSEGFYRRMVIIPMLRKFGKDGQKKDPMLLNKLITPHNMSAL 325
Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCD 702
LKG+K + ++ P++ K KEE + + +I+D D
Sbjct: 326 LNLALKGLKRTLENNEIIE-PQIARKTKEEYQHDNNPVLQFIEDAED 371
>gi|221142329|ref|ZP_03566822.1| putative DNA primase-phage associated protein [Staphylococcus
aureus subsp. aureus str. JKD6009]
gi|302750250|gb|ADL64427.1| putative DNA primase-phage associated [Staphylococcus aureus subsp.
aureus str. JKD6008]
Length = 456
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 67/287 (23%), Positives = 121/287 (42%), Gaps = 25/287 (8%)
Query: 426 SRFLGEQDGILDLETGQKVKP-TKELYITKSTGTPFVEGEPS---QEFLDLVSGYFESEE 481
+R++G ++GI D +++ P + + YIT F +G S + F+ +S E EE
Sbjct: 100 ARYIGLKNGIYD-TVEERLNPFSPQYYITNIIDVDFDKGAQSDLIERFIKDISN--EDEE 156
Query: 482 VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQN 541
V +G L N Q GG+GK+TL+ L+ + + + +D+
Sbjct: 157 VEQLIYEMIGYGLYRDNFLQVAFFYYSPGGNGKTTLLKLLHHFYNPENTTALSFNDLNDK 216
Query: 542 RPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESP 601
P AN L G + I + + N + K + G+ +T + + P
Sbjct: 217 FKP----AN-----LQGKLVNIADDIDPNRIKDTGNFKIIVTGNYITLEFKGQDAFEFKP 267
Query: 602 ASFTPFIVPNKHLFVRN-PDDAWWRRYIVIP----FDKPIANRDASFAQKLETKYTLEA- 655
+ I + L + N + ++RR ++IP F K +D KL T + + A
Sbjct: 268 --YVKLIFASNELPMSNDKSEGFYRRMVIIPMLRKFGKGGQKKDPMLLNKLITPHNMSAL 325
Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCD 702
LKG+K + ++ P++ K KEE + + +I+D D
Sbjct: 326 LNLALKGLKRTLENNEIIE-PKIARKTKEEYQFENNPVLQFIEDATD 371
>gi|10954590|ref|NP_052184.1| helicase-like protein [Sulfolobus islandicus]
gi|1930088|gb|AAB51531.1| helicase-like protein [Sulfolobus islandicus]
Length = 979
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/162 (28%), Positives = 74/162 (45%), Gaps = 18/162 (11%)
Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ-NRPPEAGK 548
+G L K + + G SGKST + L+K G Q ++ ++ N AG
Sbjct: 552 IGYTLYPATKFKLAFMLLGPRDSGKSTFLQLLKRILGKQNTVSIRLRELFDPNNRFVAGF 611
Query: 549 ANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPF- 607
L+ L +ET E + + K +TGGD +T+ + + + P +FTP+
Sbjct: 612 LFHKLVNLT-------AETKEYTIEDIDRFKTLTGGDQITSDVKF-----KGPITFTPYA 659
Query: 608 ---IVPNKHLFVRNPDD-AWWRRYIVIPFDKPIANRDASFAQ 645
I NK +R+ +D A+WRR+++I F N D F Q
Sbjct: 660 KLIIASNKLPDIRDKNDTAFWRRWLIIEFPNQFPNDDNWFRQ 701
>gi|330684410|gb|EGG96135.1| phage/plasmid primase, P4 family, C-terminal domain protein
[Staphylococcus epidermidis VCU121]
Length = 455
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 66/287 (22%), Positives = 119/287 (41%), Gaps = 23/287 (8%)
Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPS---QEFLDLVSGYFESEE 481
S+R++G ++GI D+ + + + YIT F E S + F+ +S + EE
Sbjct: 99 SARYIGLKNGIYDIVEEKLKAFSPQYYITNIIDVDFNEQAQSDLIERFIKDISN--DDEE 156
Query: 482 VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQN 541
V +G L N Q GG+GK+TL+ L+ + + + +D+
Sbjct: 157 VEQLIYEMIGYGLYRDNFLQVAFFYYSPGGNGKTTLLKLLHHFYNPENTTALSFNDLNDK 216
Query: 542 RPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESP 601
P AN L G + I + + N + K + G+ +T + + P
Sbjct: 217 FKP----AN-----LQGKLVNIADDIDPNRIKDTGNFKIIVTGNYITLEFKGQDAFEFKP 267
Query: 602 ASFTPFIVPNKHLFVRN-PDDAWWRRYIVIP----FDKPIANRDASFAQKLETKYTLEA- 655
+ I + L + N + ++RR ++IP F K +D KL T + + A
Sbjct: 268 --YVKLIFASNELPMSNDKSEGFYRRMVIIPMLRKFGKGGQKKDPMLLNKLITPHNMSAL 325
Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCD 702
LKG+K + ++ P++ K KEE + + +I+D D
Sbjct: 326 LNLALKGLKRTLENNEIIE-PKITRKTKEEYQFDNNPVLQFIEDATD 371
>gi|299531535|ref|ZP_07044941.1| Phage/plasmid primase P4 [Comamonas testosteroni S44]
gi|298720498|gb|EFI61449.1| Phage/plasmid primase P4 [Comamonas testosteroni S44]
Length = 420
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 70/307 (22%), Positives = 124/307 (40%), Gaps = 27/307 (8%)
Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP-TKELYITKSTGT 458
S AKST Q+ ++ + S S + ++G L L+ + P K+L I
Sbjct: 64 SNAKSTHQT----ALLWLPSLKETHSRAIIPVKNGYLHLDGTPSLLPHDKKLGIRHVLDC 119
Query: 459 PF--VEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKST 516
F P+ EF L+ EV D G LL + Q G G +GK T
Sbjct: 120 NFDPAAATPT-EFFKLLERILPDAEVRDRVQEYCGYTLLPDARFQCAQLWVGSGANGKGT 178
Query: 517 LMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAA 576
L N+++ N+ + D ++G+ ++ E ND
Sbjct: 179 LANILQALHTNKAAASPNKLDGFHA------------ATVLGASLLYCDEAPPNDWCEQT 226
Query: 577 KIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF--DK 634
+K M G+ + Y + + I+ N +++ + +WRR+ V+PF
Sbjct: 227 -LKSMVAGESVAIDRKYLPPITAR-VTGKWLILANHIPAIKDQSNGFWRRFGVVPFPVSI 284
Query: 635 PIANRDASFAQKLETKYTLEAK-KWFLKGVKAYISKG-LDVDIPEVCLKAKEEERQGTDT 692
P A RD A+++ K+ L A W ++G++ + +G D ++P A + + T++
Sbjct: 285 PAAERDPLLAERI-IKHELSAVLNWAVEGLQRLLLRGRFDPNMPRAMQNAIQSAKVETNS 343
Query: 693 YQAWIDD 699
+WI D
Sbjct: 344 VHSWISD 350
>gi|307591581|ref|YP_003900380.1| primase P4 [Cyanothece sp. PCC 7822]
gi|306986435|gb|ADN18314.1| primase P4 [Cyanothece sp. PCC 7822]
Length = 1006
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 80/371 (21%), Positives = 155/371 (41%), Gaps = 36/371 (9%)
Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLD-LVSGYFESEEV 482
S+ +G D + +L TG+ + + Y+T PF S +D ++ ++ +
Sbjct: 427 STKDLVGFSDCVYELSTGKTREHSPHNYLTWVLPRPFNPLSRSWTTIDEWLTEATQNNQT 486
Query: 483 MDYFTRCVGMALLGGNK-AQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQN 541
C A+L Q+F+H+ G GGSGKS+ MNL+ G Q I+ + + +
Sbjct: 487 HKQILICYAAAVLRQRADLQKFLHLIGTGGSGKSSFMNLLVALVGQQNTISLDFPSLNEK 546
Query: 542 RPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESP 601
++ G + I + + + N + K+MTG D + R Y + +S
Sbjct: 547 D---------AIAEAFGKALAIFPDQDSAGK-NLSNFKKMTGQDLLRGRRLYKDGFSFKF 596
Query: 602 ASFTPFIVPNKHLFVRNPDDAWW-RRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFL 660
++ + H W RR +++PF+ +A+ + +K E + L A +L
Sbjct: 597 GGMC--VLSSNHPIFHAGSGRWLTRRVLMVPFNLAVADGNVRNLEK-EFEPELSAFTSYL 653
Query: 661 KGVKA----YISKGLDVDIPEVCLKAKEEERQGTDTYQAWID-----DC---CDIGENLW 708
+ KGL+ +V E ++ +D +W++ DC IG N
Sbjct: 654 LSIPTEEIEATLKGLNKK--QVISSTLWESQKRSDGLASWVNDEIIFDCTAKTQIGSNAR 711
Query: 709 E---ESHSLAKS--YSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSK 763
E E ++ KS + Y R+ ++ + NL + G +K++ +++
Sbjct: 712 EWNDEDYNPLKSTLFGSYCHHIRRSGRQPLTKDNFSANLIEL-LKGTLKKDVDKRKTNQG 770
Query: 764 RIIKGLKLKPA 774
R + G++L+ A
Sbjct: 771 RFLMGVRLRTA 781
>gi|67921707|ref|ZP_00515224.1| Phage/plasmid primase P4, C-terminal [Crocosphaera watsonii WH
8501]
gi|67856299|gb|EAM51541.1| Phage/plasmid primase P4, C-terminal [Crocosphaera watsonii WH
8501]
Length = 1013
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 103/226 (45%), Gaps = 25/226 (11%)
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTG---TPFVEGEP-SQEFLDLVSGYFE 478
+S + ++G+LDL+T + + + + Y T S P + P Q L+++ G
Sbjct: 439 NSQQGLIPFRNGVLDLDTRELLPHSPQNYFTWSLPYDYNPLAQCNPIKQWLLEMMEG--- 495
Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538
E +++ + + G Q+F+ + G GGSGKSTL+ L G + V + DI
Sbjct: 496 DESLVNLIRAYLHGIVTGRTDWQKFLALCGPGGSGKSTLIKLAIALVGFENV-HVTDLDI 554
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598
++ E L R+VII+E + K+K +TGGD RL + Y
Sbjct: 555 LEKDKFETS-------NLKDKRLVIINEATSYKGVK--KLKALTGGD----RLRFEQKYK 601
Query: 599 ESPASFTP----FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD 640
++ ASF P I N+ + + +RR I + ++ I +++
Sbjct: 602 QALASFYPDALVIITSNEPIKTGDYTSGLYRREIPLSMNRRIPDKE 647
>gi|291289516|emb|CBH29173.1| BA71V-C962R [African swine fever virus E75]
Length = 669
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 87/212 (41%), Gaps = 10/212 (4%)
Query: 422 LDSSSRFLGEQDGILDLET--GQKVKPTKELYITKSTGTPFVEGEP----SQEFLDLVSG 475
LD++ LG +G+L +ET + + E I + T +V P ++ L+ +
Sbjct: 251 LDTNPHLLGVGNGVLSIETIPAKLINHFHEHPIHQYTHICYVPFNPENPWTKLLLNALQD 310
Query: 476 YFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535
+ + + A+ G K + G G +GK+ LM L+ G+ Y
Sbjct: 311 IIPELDARLWIMFYLSTAIFRGLKEALMLLWLGGGCNGKTFLMRLVAMVLGDHYASKLNI 370
Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTG-GDCMTARLNYG 594
S + R A K N + +RL G ETN+++ +N +++K+M GD LN
Sbjct: 371 SLLTSCRE-TAEKPNSAFMRLKGRGYGYFEETNKSEVLNTSRLKEMVNPGDVTARELNQK 429
Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRR 626
+ A+ N + + D WRR
Sbjct: 430 QESFQMTATMV--AASNYNFIIDTTDHGTWRR 459
>gi|51245423|ref|YP_065307.1| hypothetical protein DP1571 [Desulfotalea psychrophila LSv54]
gi|50876460|emb|CAG36300.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54]
Length = 593
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/199 (25%), Positives = 84/199 (42%), Gaps = 13/199 (6%)
Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVS 474
+ SD LD L +G+LDL+ G + +TK + F +++
Sbjct: 194 IAAISDDLDQKKWLLPCANGVLDLKRGLLMDGRPSDLLTKQIDVAYNPDADYSFFEEIIK 253
Query: 475 GYFESEEVMD------YFTRCVGMALLGGNKAQRFIHI-RGVGGSGKSTLMNLIKYAFGN 527
E+ + R G A+ G N + F+ I G G +GK T++ I G
Sbjct: 254 DICVCPEIEGTDLLPAFLKRLFGYAITG-NVNEEFLAIFIGPGRNGKGTILETITSVLGA 312
Query: 528 QYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCM 587
Y + I Q P + + L G R+V+ +ETN+ +I+ IK +TGG+ +
Sbjct: 313 YYHQANRSLFIEQKFEPPPSATSEHMYALQGKRLVVGAETNKGQKIDGGLIKGITGGNKV 372
Query: 588 TARLNYGNTYSESPASFTP 606
R N+ +S +FTP
Sbjct: 373 NYRKNF-----KSEKTFTP 386
>gi|229890280|sp|P0C9X3|H962R_ASFP4 RecName: Full=Putative helicase C962R
Length = 962
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 89/212 (41%), Gaps = 10/212 (4%)
Query: 422 LDSSSRFLGEQDGILDLET--GQKVKPTKELYITKSTGTPFVEGEP----SQEFLDLVSG 475
LD++ LG +G+L +ET + + E I + T +V P ++ L+ +
Sbjct: 544 LDTNPHLLGVGNGVLSIETIPAKLINHFHEYPIHQYTHICYVPFNPENPWTKLLLNALQD 603
Query: 476 YFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535
+ + + A+ G K + G G +GK+ LM L+ G+ Y
Sbjct: 604 IIPELDARLWIMFYLSTAIFRGLKEALMLLWLGGGCNGKTFLMRLVAMVLGDHYASKLNI 663
Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR-LNYG 594
S + R A K N + +RL G ETN+++ +N +++K+M +TAR LN
Sbjct: 664 SLLTSYRE-TAEKPNSAFMRLKGRGYGYFEETNKSEVLNTSRLKEMVNPGDVTARELNQK 722
Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRR 626
+ A+ N + + D WRR
Sbjct: 723 QESFQMTATMV--AASNYNFIIDTTDHGTWRR 752
>gi|320178845|gb|EFW53808.1| DNA primase , phage-associated / Replicative helicase RepA
[Shigella boydii ATCC 9905]
Length = 584
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/241 (22%), Positives = 102/241 (42%), Gaps = 21/241 (8%)
Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY 476
I + + SS L +G+L+L+TG+ T E +IT G + P + D +
Sbjct: 218 IADPMGEPSSDLLPFTNGVLNLKTGEFSPHTPENWITTHNGIEYTPPAPGENIRDNAPNF 277
Query: 477 FE------SEEVMDYFTRCVGMALLGGNKA--QRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528
+ ++ C + ++ N+ Q FI G GGSGKST ++ G Q
Sbjct: 278 HKWLDHAAGKDPRKMMRICAALYMIMANRYDWQMFIEATGDGGSGKSTFTHIASLLAGKQ 337
Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588
++AE M + G+A +++GSR++++++ + IK++TGGD +
Sbjct: 338 NTVSAE----MTSLDDAGGRA-----QVVGSRLIVLADQPKYTG-EGTGIKKITGGDPVE 387
Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQK 646
Y ++ + N +F RR ++ FD + A +D +K
Sbjct: 388 INPKYEKRFTAVIRAVVLATDNNPMIFTERAGGV-ARRRVIFRFDNIVSEAEKDRELPEK 446
Query: 647 L 647
+
Sbjct: 447 I 447
>gi|327252446|gb|EGE64105.1| phage/plasmid primase, P4 family, C-terminal domain protein
[Escherichia coli STEC_7v]
Length = 582
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/241 (22%), Positives = 100/241 (41%), Gaps = 21/241 (8%)
Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY 476
I + + S L +G LDL+TG+ T E +IT G + P + D +
Sbjct: 216 IAEPMGEPSGDLLPFANGALDLKTGEFSPHTPENWITTHNGIEYTPPAPGENIRDNAPNF 275
Query: 477 FE------SEEVMDYFTRCVGMALLGGNKA--QRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528
+ ++ C + ++ N+ Q FI G GGSGKST ++ G Q
Sbjct: 276 HKWLEHAAGKDPSKMMRICAALYMIMANRYDWQMFIEATGDGGSGKSTFTHIASLLAGKQ 335
Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588
++AE M + G+A +++GSR++++++ + IK++TGGD +
Sbjct: 336 NTVSAE----MTSLDDAGGRA-----QVVGSRLIVLADQQKYTG-EGTGIKKITGGDPVE 385
Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQK 646
Y ++ + N +F RR ++ FD + A +D +K
Sbjct: 386 INPKYEKRFTAVIRAVVLATNNNPMIFTERAGGV-ARRRVIFRFDNIVSEAEKDRELPEK 444
Query: 647 L 647
+
Sbjct: 445 I 445
>gi|9628179|ref|NP_042765.1| pC962R [African swine fever virus]
gi|82051501|sp|Q65162|H962R_ASFB7 RecName: Full=Putative helicase C962R
gi|780441|gb|AAA65301.1| pC962R [African swine fever virus]
gi|162849281|emb|CAN10171.1| pC962R [African swine fever virus Benin 97/1]
gi|1097461|prf||2113434BY C962R gene
Length = 962
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 89/212 (41%), Gaps = 10/212 (4%)
Query: 422 LDSSSRFLGEQDGILDLET--GQKVKPTKELYITKSTGTPFVEGEP----SQEFLDLVSG 475
LD++ LG +G+L +ET + + E I + T +V P ++ L+ +
Sbjct: 544 LDTNPHLLGVGNGVLSIETIPAKLINHFHEHPIHQYTHICYVPFNPENPWTKLLLNALQD 603
Query: 476 YFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535
+ + + A+ G K + G G +GK+ LM L+ G+ Y
Sbjct: 604 IIPELDARLWIMFYLSTAIFRGLKEALMLLWLGGGCNGKTFLMRLVAMVLGDHYASKLNI 663
Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR-LNYG 594
S + R A K N + +RL G ETN+++ +N +++K+M +TAR LN
Sbjct: 664 SLLTSCRE-TAEKPNSAFMRLKGRGYGYFEETNKSEVLNTSRLKEMVNPGDVTARELNQK 722
Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRR 626
+ A+ N + + D WRR
Sbjct: 723 QESFQMTATMV--AASNYNFIIDTTDHGTWRR 752
>gi|323968126|gb|EGB63536.1| phage/plasmid primase [Escherichia coli M863]
Length = 584
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/241 (24%), Positives = 101/241 (41%), Gaps = 21/241 (8%)
Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY 476
I + + S L +G LDL+TG+ T E +IT G + P + D +
Sbjct: 218 IAEPMGEPSGDLLPFANGALDLKTGEFSPHTPENWITTHNGIEYTPPAPGENIRDNAPNF 277
Query: 477 FE-SEEVMDYFTR-----CVGMALLGGNKA--QRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528
+ E V R C + ++ N+ Q FI G GGSGKST ++ G Q
Sbjct: 278 HKWLEHVAGKDPRKMMRICAALYMIMANRYDWQMFIEATGDGGSGKSTFTHIASLLAGKQ 337
Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588
++AE M + G+A +++GSR++++++ + IK++TGGD +
Sbjct: 338 NTVSAE----MTSLDDAGGRA-----QVVGSRLIVLADQPKYTG-EGTGIKKITGGDPVE 387
Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQK 646
Y ++ + N +F RR I+ FD + A +D +K
Sbjct: 388 INPKYEKRFTAVIRAVVLATNNNPMIFTERAGGV-SRRRIIFRFDNIVSEAEKDRELPEK 446
Query: 647 L 647
+
Sbjct: 447 I 447
>gi|39937604|ref|NP_949880.1| hypothetical protein RPA4546 [Rhodopseudomonas palustris CGA009]
gi|39651463|emb|CAE29986.1| conserved hypothetical protein [Rhodopseudomonas palustris CGA009]
Length = 770
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 68/157 (43%), Gaps = 28/157 (17%)
Query: 51 ACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFR--- 107
G G + G G L A D D+ D+ A G+ VRIG+ PK + R
Sbjct: 82 GAGVGIMTG-GPLNLIAVDADTLDQACAGKVMIAGMKHFGSTPVRIGRAPKAVYLIRVTE 140
Query: 108 -----------MNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHR 156
+N EG + + +++L G+ FVA+ IHP TKK Y WTTP
Sbjct: 141 PIQYCRVEFGPLNDEGRRVDR--------VELLSDGRQFVAHGIHPVTKKPYVWTTP--L 190
Query: 157 FKVEDTPLLSEEDVEYLFKFFQEI---TVPLVKDKKS 190
V+ P+++ + + ++I T PLV + +
Sbjct: 191 CHVDKLPVVTPQQLAAFMDELRQILPNTGPLVTEGAT 227
>gi|303398756|emb|CBW46737.1| C962R [African swine fever virus Georgia 2007/1]
Length = 962
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 89/212 (41%), Gaps = 10/212 (4%)
Query: 422 LDSSSRFLGEQDGILDLET--GQKVKPTKELYITKSTGTPFVEGEP----SQEFLDLVSG 475
LD++ LG +G+L +ET + + E I + T +V P ++ L+ +
Sbjct: 544 LDTNPHLLGVGNGVLSIETIPAKLINHFHEHPIHQYTHICYVPFNPENPWTKLLLNALQD 603
Query: 476 YFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535
+ + + A+ G K + G G +GK+ LM L+ G+ Y
Sbjct: 604 IIPELDARLWIMFYLSTAIFRGLKEALMLLWLGGGCNGKTFLMRLVAMVLGDHYASKLNI 663
Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR-LNYG 594
S + R A K N + +RL G ETN+++ +N +++K+M +TAR LN
Sbjct: 664 SLLTSCRE-TAEKPNSAFMRLKGRGYGYFEETNKSEVLNTSRLKEMVNPGDVTARELNQK 722
Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRR 626
+ A+ N + + D WRR
Sbjct: 723 QESFQMTATMV--AASNYNFIIDTTDHGTWRR 752
>gi|229890279|sp|P0C9X2|H962R_ASFK5 RecName: Full=Putative helicase C962R
Length = 962
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 87/212 (41%), Gaps = 10/212 (4%)
Query: 422 LDSSSRFLGEQDGILDLET--GQKVKPTKELYITKSTGTPFVEGEP----SQEFLDLVSG 475
LD++ LG +G+L +ET + + E I + T +V P ++ L+ +
Sbjct: 544 LDTNPHLLGVGNGVLSIETIPAKLINHFHEHPIHQYTHICYVPFNPENPWTKLLLNALQD 603
Query: 476 YFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535
+ + + A+ G K + G G +GK+ LM L+ G+ Y
Sbjct: 604 IIPELDARLWIMFYLSTAIFRGLKEALMLLWLGGGCNGKTFLMRLVAMVLGDHYASKLNI 663
Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTG-GDCMTARLNYG 594
S + R A K N + +RL G ETN+++ +N +++K+M GD LN
Sbjct: 664 SLLTSYRE-TAEKPNSAFMRLKGRGYGYFEETNKSEVLNTSRLKEMVNPGDVTARELNQK 722
Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRR 626
+ A+ N + + D WRR
Sbjct: 723 QESFQMTATMVA--ASNYNFIIDTTDHGTWRR 752
>gi|229890281|sp|P0C9X1|H962R_ASFWA RecName: Full=Putative helicase C962R
Length = 962
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 89/212 (41%), Gaps = 10/212 (4%)
Query: 422 LDSSSRFLGEQDGILDLET--GQKVKPTKELYITKSTGTPFVEGEP----SQEFLDLVSG 475
LD++ LG +G+L +ET + + E I + T +V P ++ L+ +
Sbjct: 544 LDTNPHLLGVGNGVLSIETIPAKLINHFHEHPIHQYTHICYVPFNPENPWTKLLLNALQD 603
Query: 476 YFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535
+ + + A+ G K + G G +GK+ LM L+ G+ Y
Sbjct: 604 IIPELDARLWIMFYLSTAIFRGLKEALMLLWLGGGCNGKTFLMRLVAMVLGDHYASKLNI 663
Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR-LNYG 594
S + R A K N + +RL G ETN+++ +N +++K+M +TAR LN
Sbjct: 664 SLLTSYRE-TAEKPNSAFMRLKGRGYGYFEETNKSEVLNTSRLKEMVNPGDVTARELNQK 722
Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRR 626
+ A+ N + + D WRR
Sbjct: 723 QESFQMTATMV--AASNYNFIIDTTDHGTWRR 752
>gi|162849454|emb|CAN10420.1| pC962R [African swine fever virus OURT 88/3]
Length = 962
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 87/212 (41%), Gaps = 10/212 (4%)
Query: 422 LDSSSRFLGEQDGILDLET--GQKVKPTKELYITKSTGTPFVEGEP----SQEFLDLVSG 475
LD++ LG +G+L +ET + + E I + T +V P ++ L+ +
Sbjct: 544 LDTNPHLLGVGNGVLSIETIPAKLINHFHEHPIHQYTRICYVPFNPENPWTKLLLNALQD 603
Query: 476 YFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535
+ + + A+ G K + G G +GK+ LM L+ G+ Y
Sbjct: 604 IIPELDARLWIMFYLSTAIFRGLKEALMLLWLGGGCNGKTFLMRLVAMVLGDHYASKLNI 663
Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTG-GDCMTARLNYG 594
S + R A K N + +RL G ETN+++ +N +++K+M GD LN
Sbjct: 664 SLLTSCRE-TAEKPNSAFMRLKGRGYGYFEETNKSEVLNTSRLKEMVNPGDVTARELNQK 722
Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRR 626
+ A+ N + + D WRR
Sbjct: 723 QESFQMTATMV--AASNYNFIIDTTDHGTWRR 752
>gi|218700360|ref|YP_002407989.1| nucleic acid independent nucleoside triphosphatase; phage DNA
primase [Escherichia coli IAI39]
gi|218370346|emb|CAR18149.1| nucleic acid independent nucleoside triphosphatase; phage DNA
primase [Escherichia coli IAI39]
Length = 582
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/241 (22%), Positives = 101/241 (41%), Gaps = 21/241 (8%)
Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY 476
I + + S L +G LDL+TG+ T E +IT + G + P + D +
Sbjct: 216 IAEPMGEPSGDLLPFANGALDLKTGEFSPHTPENWITTNNGIEYTPPAPGENIRDNAPNF 275
Query: 477 FE------SEEVMDYFTRCVGMALLGGNKA--QRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528
+ ++ C + ++ N+ Q FI G GGSGKST ++ G Q
Sbjct: 276 HKWLEHAAGKDSRKMMRICAALYMIMANRYDWQMFIEATGDGGSGKSTFTHIASLLAGKQ 335
Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588
++AE M + G+A +++GSR++++++ + IK++TGGD +
Sbjct: 336 NTVSAE----MTSLDDAGGRA-----QVVGSRLIVLADQPKYTG-EGTGIKKITGGDPVE 385
Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQK 646
Y ++ + N +F RR ++ FD + A +D +K
Sbjct: 386 INPKYEKRFTTVIRAVVLATNNNPMIFTERAGGV-SRRRVIFRFDNIVSEAEKDRELPEK 444
Query: 647 L 647
+
Sbjct: 445 I 445
>gi|194434203|ref|ZP_03066470.1| bacteriophage P4 DNA primase [Shigella dysenteriae 1012]
gi|194417532|gb|EDX33634.1| bacteriophage P4 DNA primase [Shigella dysenteriae 1012]
gi|332096153|gb|EGJ01156.1| putative bacteriophage P4 DNA primase [Shigella dysenteriae 155-74]
Length = 582
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/241 (22%), Positives = 100/241 (41%), Gaps = 21/241 (8%)
Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY 476
I + + S L +G LDL+TG+ T E +IT G + P + D +
Sbjct: 216 IAEPMGEPSGDLLPFANGALDLKTGEFSPHTPENWITTHNGIEYTPPAPGENIRDNAPNF 275
Query: 477 FE------SEEVMDYFTRCVGMALLGGNKA--QRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528
+ ++ C + ++ N+ Q FI G GGSGKST ++ G Q
Sbjct: 276 HKWLKHAAGKDPRKMMRICAALYMIMANRYDWQMFIEATGDGGSGKSTFTHIASLLAGKQ 335
Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588
++AE M + G+A +++GSR++++++ + IK++TGGD +
Sbjct: 336 NTVSAE----MTSLDDAGGRA-----QVVGSRLIVLADQPKYTG-EGTGIKKITGGDPVE 385
Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQK 646
Y ++ + N +F RR ++ FD + A +D +K
Sbjct: 386 INPKYEKRFTAVIRAVVLATNNNPMIFTERAGGV-ARRRVIFRFDNIVSEAEKDRELPEK 444
Query: 647 L 647
+
Sbjct: 445 I 445
>gi|332767356|gb|EGJ97550.1| phage/plasmid primase [Shigella flexneri 2930-71]
Length = 582
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/241 (22%), Positives = 101/241 (41%), Gaps = 21/241 (8%)
Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY 476
I + + + S L +G LDL+TG+ T E +IT G + P + D +
Sbjct: 216 IAAPMGEPSGDLLPFANGALDLKTGEFSPHTPENWITTHNGIEYTPPAPGENIRDNALNF 275
Query: 477 FE------SEEVMDYFTRCVGMALLGGNKA--QRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528
+ ++ C + ++ N+ Q FI G GGSGKST ++ G Q
Sbjct: 276 HKWLEHAAGKDQRKMMRICAALYMIMANRYDWQMFIEATGDGGSGKSTFTHIASLLAGKQ 335
Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588
++AE M + G+A +++GSR++++++ + IK++TGGD +
Sbjct: 336 NTVSAE----MTSLDDAGGRA-----QVVGSRLIVLADQPKYTG-EGTGIKKITGGDPVE 385
Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQK 646
Y ++ + N +F RR ++ FD + A +D +K
Sbjct: 386 INPKYEKRFTAVIRAVVLATNNNPMIFTERAGGV-ARRRVIFRFDNIVSEAEKDRELPEK 444
Query: 647 L 647
+
Sbjct: 445 I 445
>gi|237707148|ref|ZP_04537629.1| bacteriophage P4 DNA primase [Escherichia sp. 3_2_53FAA]
gi|226898358|gb|EEH84617.1| bacteriophage P4 DNA primase [Escherichia sp. 3_2_53FAA]
gi|294493409|gb|ADE92165.1| conserved hypothetical protein [Escherichia coli IHE3034]
gi|323958175|gb|EGB53884.1| phage/plasmid primase [Escherichia coli H263]
Length = 582
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/241 (22%), Positives = 100/241 (41%), Gaps = 21/241 (8%)
Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY 476
I + + S L +G LDL+TG+ T E +IT G + P + D +
Sbjct: 216 IAEPMGEPSGDLLPFANGALDLKTGEFSPHTPENWITTHNGIEYTPPAPGENIRDNAPNF 275
Query: 477 FE------SEEVMDYFTRCVGMALLGGNKA--QRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528
+ ++ C + ++ N+ Q FI G GGSGKST ++ G Q
Sbjct: 276 HKWLEHAAGKDPRKMMRICAALYMIMANRYDWQMFIEATGDGGSGKSTFTHIASLLAGKQ 335
Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588
++AE M + G+A +++GSR++++++ + IK++TGGD +
Sbjct: 336 NTVSAE----MTSLDDAGGRA-----QVVGSRLIVLADQPKYTG-EGTGIKKITGGDPVE 385
Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQK 646
Y ++ + N +F RR ++ FD + A +D +K
Sbjct: 386 INPKYEKRFTAVIRAVVLATNNNPMIFTERAGGV-ARRRVIFRFDNIVSEAEKDRELPEK 444
Query: 647 L 647
+
Sbjct: 445 I 445
>gi|299536247|ref|ZP_07049560.1| hypothetical protein BFZC1_09515 [Lysinibacillus fusiformis ZC1]
gi|298728233|gb|EFI68795.1| hypothetical protein BFZC1_09515 [Lysinibacillus fusiformis ZC1]
Length = 599
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 94/224 (41%), Gaps = 21/224 (9%)
Query: 505 HIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVII 564
++ GV SGKS ++ L+++ G + N S++ Q L +L ++
Sbjct: 339 YLVGVKDSGKSIILRLLEHLVGPNFFTNLSFSELNQQ---------SFLCQLFEKKLNTC 389
Query: 565 SETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHL-FVRNPD--D 621
ET+E K+++GGD + AR YG + + I HL ++ D +
Sbjct: 390 GETSEIALNRLDNFKKLSGGDYVMARYLYGQAFKFINKA--ALIFAGNHLPTIKGIDKSN 447
Query: 622 AWWRRYIVIPFDK--PIANRDASFAQKL--ETKYTLEAKKWFLKGVKAYISKGLDVDIPE 677
A+ R ++ PF+ P +D KL ET Y W L G++ +I E
Sbjct: 448 AFSERLVIFPFNHQVPKEEQDIHLFDKLMKETSYI---AHWALIGLQRWIDNNYQFTTCE 504
Query: 678 VCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEY 721
K E + T++ ++I CC + + + L +Y +Y
Sbjct: 505 QIEKMAREYSEQTNSIDSFIKSCCYMNPDSKTHNDVLETAYKKY 548
>gi|126659986|ref|ZP_01731109.1| hypothetical protein CY0110_01600 [Cyanothece sp. CCY0110]
gi|126618751|gb|EAZ89497.1| hypothetical protein CY0110_01600 [Cyanothece sp. CCY0110]
Length = 1031
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 94/217 (43%), Gaps = 25/217 (11%)
Query: 432 QDGILDLETGQKVKPTKELYITKSTG---TPFVEGEPSQEFLDLVSGYFESEEVMDYFTR 488
++G+LD+ET + + Y+T P P +++L E + + R
Sbjct: 454 RNGVLDIETKELWPHSPTNYLTWCLPYDFNPLASCNPIKQWL---LEMMEGDATLVNLIR 510
Query: 489 CVGMALLGGNKA-QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAG 547
++ G Q+F+ + G GGSGKSTL L G + V + DI++ E
Sbjct: 511 AYLHGIVTGRADWQKFLALCGPGGSGKSTLTKLAIALVGAENV-HVTDLDILEKDKFETA 569
Query: 548 KANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP- 606
+ R+VII+E + K+K +TGGD RL + Y ++ ASF P
Sbjct: 570 N-------IKDKRLVIINEATSYKGVK--KLKALTGGD----RLRFEQKYKQALASFYPD 616
Query: 607 ---FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD 640
I N+ + + +RR I + ++ IA RD
Sbjct: 617 ALVIITSNEPIKTGDHTSGLYRREIPLTMNRRIAERD 653
>gi|325959878|ref|YP_004291344.1| phage/plasmid primase, P4 family [Methanobacterium sp. AL-21]
gi|325331310|gb|ADZ10372.1| phage/plasmid primase, P4 family [Methanobacterium sp. AL-21]
Length = 584
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 96/217 (44%), Gaps = 28/217 (12%)
Query: 455 STGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGK 514
S +PF + + + F D G F++ F + VG GN + + G G +GK
Sbjct: 285 SADSPFFKEKICEIFDD--PGKFQT------FLQIVGYLFAKGNPHNKLFLLMGKGANGK 336
Query: 515 STLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEIN 574
S LM +I F IN+ A+ +Q+ + G L L+G R+ ++S+
Sbjct: 337 SLLMQIISAIF-----INSSAAVPLQDFQKDFG-----LQPLIGKRVNLLSDLPIATIEE 386
Query: 575 AAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAW--WRRYIVIPF 632
+IK +TGGD +T + + + IV + + DD++ WRR ++I
Sbjct: 387 TGQIKAITGGDDITINRKFKDPLT---TKLKCKIVGAGNRLPKIMDDSYALWRRIVIIKL 443
Query: 633 DKPI--ANRDASFAQKLETKYTLEAKKWFL-KGVKAY 666
+K +RD +KL E +WF+ ++AY
Sbjct: 444 EKTFDGDSRDTKLTEKLLN--DTEGMEWFIFNAIQAY 478
>gi|315615444|gb|EFU96076.1| putative DNA primase [Escherichia coli 3431]
Length = 584
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/241 (22%), Positives = 100/241 (41%), Gaps = 21/241 (8%)
Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY 476
I + + S L +G LDL+TG+ T E +IT G + P + D +
Sbjct: 218 IAEPMGEPSGDLLPFANGALDLKTGEFSPHTPENWITTHNGIEYTPPAPGENIRDNAPNF 277
Query: 477 FE------SEEVMDYFTRCVGMALLGGNKA--QRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528
+ ++ C + ++ N+ Q FI G GGSGKST ++ G Q
Sbjct: 278 HKWLEHAAGKDPRKMMRICAALYMIMANRYDWQMFIEATGDGGSGKSTFTHIASLLAGKQ 337
Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588
++AE M + G+A +++GSR++++++ + IK++TGGD +
Sbjct: 338 NTVSAE----MTSLDDAGGRA-----QVVGSRLIVLADQPKYTG-EGTGIKKITGGDPVE 387
Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQK 646
Y ++ + N +F RR ++ FD + A +D +K
Sbjct: 388 INPKYEKRFTAVIRAVVLATNNNPMIFTERAGGV-ARRRVIFRFDNIVSEAEKDRELPEK 446
Query: 647 L 647
+
Sbjct: 447 I 447
>gi|315291925|gb|EFU51277.1| phage/plasmid primase, P4 family protein [Escherichia coli MS
153-1]
Length = 584
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/241 (22%), Positives = 100/241 (41%), Gaps = 21/241 (8%)
Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY 476
I + + S L +G LDL+TG+ T E +IT G + P + D +
Sbjct: 218 IAEPMGEPSGDLLPFANGALDLKTGEFSPHTPENWITTHNGIEYTPPAPGENIRDNAPNF 277
Query: 477 FE------SEEVMDYFTRCVGMALLGGNKA--QRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528
+ ++ C + ++ N+ Q FI G GGSGKST ++ G Q
Sbjct: 278 HKWLEHAAGKDPRKMMRICAALYMIMANRYDWQMFIEATGDGGSGKSTFTHIASLLAGKQ 337
Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588
++AE M + G+A +++GSR++++++ + IK++TGGD +
Sbjct: 338 NTVSAE----MTSLDDAGGRA-----QVVGSRLIVLADQPKYTG-EGTGIKKITGGDPVE 387
Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQK 646
Y ++ + N +F RR ++ FD + A +D +K
Sbjct: 388 INPKYEKRFTAVIRAVVLATNNNPMIFTERAGGV-ARRRVIFRFDNIVSEAEKDRELPEK 446
Query: 647 L 647
+
Sbjct: 447 I 447
>gi|333008342|gb|EGK27816.1| phage/plasmid primase [Shigella flexneri K-272]
gi|333019830|gb|EGK39102.1| phage/plasmid primase [Shigella flexneri K-227]
Length = 583
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/245 (23%), Positives = 105/245 (42%), Gaps = 28/245 (11%)
Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ--------- 467
I + + S L +G LDL+TG+ T E +IT G + P +
Sbjct: 216 IAEPMGEPSGDLLPFANGALDLKTGEFSPHTPENWITTHNGIEYTPPAPGENIRDNALNF 275
Query: 468 -EFLDLVSGYFESEEVMDYFTRCVGMALLGGNKA--QRFIHIRGVGGSGKSTLMNLIKYA 524
++L+ +G + ++M C + ++ N+ Q FI G GGSGKST ++
Sbjct: 276 HKWLEHAAGKDQRNKMMRI---CAALYMIMANRYDWQMFIEATGDGGSGKSTFTHIASLL 332
Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGG 584
G Q ++AE M + G+A +++GSR++++++ + IK++TGG
Sbjct: 333 AGKQNTVSAE----MTSLDDAGGRA-----QVVGSRLIVLADQPKYTG-EGTGIKKITGG 382
Query: 585 DCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDAS 642
D + Y ++ + N +F RR ++ FD + A +D
Sbjct: 383 DPVEINPKYEKRFTAVIRAVVLATNNNPMIFTERAGGV-ARRRVIFRFDNIVSEAEKDRE 441
Query: 643 FAQKL 647
+K+
Sbjct: 442 LPEKI 446
>gi|300902120|ref|ZP_07120125.1| phage/plasmid primase, P4 family protein [Escherichia coli MS 84-1]
gi|301306883|ref|ZP_07212930.1| phage/plasmid primase, P4 family protein [Escherichia coli MS
124-1]
gi|300405785|gb|EFJ89323.1| phage/plasmid primase, P4 family protein [Escherichia coli MS 84-1]
gi|300837892|gb|EFK65652.1| phage/plasmid primase, P4 family protein [Escherichia coli MS
124-1]
gi|315252746|gb|EFU32714.1| phage/plasmid primase, P4 family protein [Escherichia coli MS 85-1]
gi|320180578|gb|EFW55508.1| DNA primase , phage-associated / Replicative helicase RepA
[Shigella boydii ATCC 9905]
Length = 584
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/241 (22%), Positives = 100/241 (41%), Gaps = 21/241 (8%)
Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY 476
I + + S L +G LDL+TG+ T E +IT G + P + D +
Sbjct: 218 IAEPMGEPSGDLLPFANGALDLKTGEFSPHTPENWITTHNGIEYTPPAPGENIRDNAPNF 277
Query: 477 FE------SEEVMDYFTRCVGMALLGGNKA--QRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528
+ ++ C + ++ N+ Q FI G GGSGKST ++ G Q
Sbjct: 278 HKWLEHAAGKDPRKMMRICAALYMIMANRYDWQMFIEATGDGGSGKSTFTHIASLLAGKQ 337
Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588
++AE M + G+A +++GSR++++++ + IK++TGGD +
Sbjct: 338 NTVSAE----MTSLDDAGGRA-----QVVGSRLIVLADQPKYTG-EGTGIKKITGGDPVE 387
Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQK 646
Y ++ + N +F RR ++ FD + A +D +K
Sbjct: 388 INPKYEKRFTAVIRAVVLATNNNPMIFTERAGGV-ARRRVIFRFDNIVSEAEKDRELPEK 446
Query: 647 L 647
+
Sbjct: 447 I 447
>gi|240119330|dbj|BAH79195.1| putative DNA primase [Escherichia coli O157:H7]
Length = 584
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/241 (22%), Positives = 100/241 (41%), Gaps = 21/241 (8%)
Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY 476
I + + S L +G LDL+TG+ T E +IT G + P + D +
Sbjct: 218 IAEPMGEPSGDLLPFANGALDLKTGEFSPHTPENWITTHNGIEYTPPAPGENIRDNAPNF 277
Query: 477 FE------SEEVMDYFTRCVGMALLGGNKA--QRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528
+ ++ C + ++ N+ Q FI G GGSGKST ++ G Q
Sbjct: 278 HKWLEHAAGKDPRKMMRICAALYMIMANRYDWQMFIEATGDGGSGKSTFTHIASLLAGKQ 337
Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588
++AE M + G+A +++GSR++++++ + IK++TGGD +
Sbjct: 338 NTVSAE----MTSLDDAGGRA-----QVVGSRLIVLADQPKYTG-EGTGIKKITGGDPVE 387
Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQK 646
Y ++ + N +F RR ++ FD + A +D +K
Sbjct: 388 INPKYEKRFTAVIRAVVLATNNNPMIFTERAGGV-ARRRVIFRFDNIVSEAEKDRELPEK 446
Query: 647 L 647
+
Sbjct: 447 I 447
>gi|26247364|ref|NP_753404.1| hypothetical protein c1495 [Escherichia coli CFT073]
gi|26107765|gb|AAN79964.1|AE016759_238 Hypothetical protein c1495 [Escherichia coli CFT073]
Length = 584
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 55/241 (22%), Positives = 100/241 (41%), Gaps = 21/241 (8%)
Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY 476
I + + S L +G LDL+TG+ T E +IT G + P + D +
Sbjct: 218 IAEPMGEPSGDLLPFANGALDLKTGEFSPHTPENWITTHNGIEYTPPAPGENIRDNAPNF 277
Query: 477 FE------SEEVMDYFTRCVGMALLGGNKA--QRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528
+ ++ C + ++ N+ Q FI G GGSGKST ++ G Q
Sbjct: 278 HKWLEHAAGKDPRKMMRICAALYMIMANRYDWQMFIEATGDGGSGKSTFTHIASLLAGKQ 337
Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588
++AE M + G+A +++GSR++++++ + IK++TGGD +
Sbjct: 338 NTVSAE----MTSLDDAGGRA-----QVVGSRLIVLADQPKYTG-EGTGIKKITGGDPVE 387
Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQK 646
Y ++ + N +F RR ++ FD + A +D +K
Sbjct: 388 INPKYEKRFTAVIRAVVLATNNNPMIFTERAGGV-ARRRVIFRFDNIVSEAEKDRELPEK 446
Query: 647 L 647
+
Sbjct: 447 I 447
>gi|264680173|ref|YP_003280082.1| Phage/plasmid primase P4, C-terminal protein [Comamonas
testosteroni CNB-2]
gi|262210688|gb|ACY34786.1| Phage/plasmid primase P4, C-terminal protein [Comamonas
testosteroni CNB-2]
Length = 372
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 65/289 (22%), Positives = 117/289 (40%), Gaps = 38/289 (13%)
Query: 426 SRFLGEQDGILDLE-TGQKVKPTKELYITKSTGTPFVEG--------EPSQEFLDLVSGY 476
+ L ++G L L TG ++P K+ G +V G EP++ F +
Sbjct: 38 AAVLPLKNGYLHLAPTGNVLQPHD-----KAAGLQYVIGCDYDSTAPEPAR-FNHFLQTI 91
Query: 477 FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEAS 536
+V + VG LL ++ QR G G +GK L N+++ + +A
Sbjct: 92 LPDVDVRNRVQEYVGYTLLPDSRFQRLQLWLGNGANGKGVLANIVQALHAKCAAVQLDAL 151
Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNT 596
D + L L+G+ ++ ET + +N +K G+ + Y
Sbjct: 152 DGFK------------LAGLIGASLIYADETPQRG-MNEQILKSAVAGELLQIDRKYREP 198
Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD-----ASFAQKLETKY 651
+ P ++ N+ + + + WRR+ ++PF I RD AS K E
Sbjct: 199 LT-LPLKGKWLVLANQFPSITDQSNGLWRRFDIVPFPVTIPERDRDPMLASTIIKTELSG 257
Query: 652 TLEAKKWFLKGVKAYISKG-LDVDIPEVCLKAKEEERQGTDTYQAWIDD 699
L W L G++ + +G D +P A+ + ++ T++ Q+W DD
Sbjct: 258 VL---NWSLIGLQRLLERGRFDECLPSPMRSARRDVQRETNSVQSWADD 303
>gi|168758806|ref|ZP_02783813.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC4401]
gi|168769867|ref|ZP_02794874.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC4486]
gi|195937923|ref|ZP_03083305.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC4024]
gi|189354443|gb|EDU72862.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC4401]
gi|189361144|gb|EDU79563.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC4486]
Length = 584
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 55/241 (22%), Positives = 100/241 (41%), Gaps = 21/241 (8%)
Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY 476
I + + S L +G LDL+TG+ T E +IT G + P + D +
Sbjct: 218 IAEPMGEPSGDLLPFANGALDLKTGEFSPHTPENWITTHNGIEYTPPAPGENIRDNAPNF 277
Query: 477 FE------SEEVMDYFTRCVGMALLGGNKA--QRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528
+ ++ C + ++ N+ Q FI G GGSGKST ++ G Q
Sbjct: 278 HKWLEHAARKDPRKMMRICAALYMIMANRYDWQMFIEASGDGGSGKSTFTHIASLLAGKQ 337
Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588
++AE M + G+A +++GSR++++++ + IK++TGGD +
Sbjct: 338 NTVSAE----MTSLDDAGGRA-----QVVGSRLIVLADQPKYTG-EGTGIKKITGGDPVE 387
Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQK 646
Y ++ + N +F RR ++ FD + A +D +K
Sbjct: 388 INPKYEKRFTAVIRAVVLATNNNPMIFTERAGGV-ARRRVIFRFDNIVSEAEKDRELPEK 446
Query: 647 L 647
+
Sbjct: 447 I 447
>gi|188494151|ref|ZP_03001421.1| phage/plasmid P4 DNA primase domain protein [Escherichia coli
53638]
gi|188489350|gb|EDU64453.1| phage/plasmid P4 DNA primase domain protein [Escherichia coli
53638]
Length = 584
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 55/241 (22%), Positives = 100/241 (41%), Gaps = 21/241 (8%)
Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY 476
I + + S L +G LDL+TG+ T E +IT G + P + D +
Sbjct: 218 IAQPMGEPSGDLLPFANGALDLKTGEFSPHTPENWITTHNGIEYTAPAPGENIRDNAPNF 277
Query: 477 FE------SEEVMDYFTRCVGMALLGGNKA--QRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528
+ ++ C + ++ N+ Q FI G GGSGKST ++ G Q
Sbjct: 278 HKWLDHAAGKDPGKMMRICAALYMIMANRYDWQMFIEATGDGGSGKSTFTHIASLLAGKQ 337
Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588
++AE M + G+A +++GSR++++++ + IK++TGGD +
Sbjct: 338 NTVSAE----MTSLDDAGGRA-----QVVGSRLIVLADQPKYTG-EGTGIKKITGGDPVE 387
Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQK 646
Y ++ + N +F RR ++ FD + A +D +K
Sbjct: 388 INPKYEKRFTAVIRAVVLATNNNPMIFTERAGGV-ARRRVIFRFDNIVNEAEKDRELPEK 446
Query: 647 L 647
+
Sbjct: 447 I 447
>gi|124516082|gb|EAY57591.1| Phage/plasmid primase P4 [Leptospirillum rubarum]
Length = 730
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 58/242 (23%), Positives = 113/242 (46%), Gaps = 32/242 (13%)
Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549
+G++L + ++ + + G GG+GKS L+ +++ G + + + ++NR A
Sbjct: 466 LGLSLTATTEYEKALLLVGKGGNGKSVLLRVLESLIGARNRSSVQLKQ-LENRFQRA--- 521
Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP--- 606
L G + I+SE +E E+ A+IK + G+ +TA + P F P
Sbjct: 522 -----HLDGKLVNIMSELSEGGEVPDAEIKSIISGEPITAEHKL-----KPPFEFFPVCK 571
Query: 607 -FIVPNKHLFVRNPDDAWWRRYIVIPF-----DKPIANRDASFAQKLETKYTLEAKKWFL 660
+I N VR+ D +RR+I++ F DKP +RD ++KL + + + L
Sbjct: 572 LWIATNHMPSVRDLSDGLFRRFIILNFPNRFDDKP--SRDTKLSEKLAAEAS-GILNYCL 628
Query: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSE 720
K + +G + P L+A + ++ +D +++D E + E S++ S +
Sbjct: 629 KALAGVYERGALTE-PTSSLEAVQGWKRDSDQTSQFLED-----EMILEPGASISSSEAY 682
Query: 721 YR 722
+R
Sbjct: 683 HR 684
>gi|30062663|ref|NP_836834.1| bacteriophage P4 DNA primase [Shigella flexneri 2a str. 2457T]
gi|56479831|ref|NP_707046.2| bacteriophage P4 DNA primase [Shigella flexneri 2a str. 301]
gi|30040911|gb|AAP16641.1| Bacteriophage P4 DNA primase [Shigella flexneri 2a str. 2457T]
gi|56383382|gb|AAN42753.2| Bacteriophage P4 DNA primase [Shigella flexneri 2a str. 301]
gi|313650411|gb|EFS14818.1| putative DNA primase [Shigella flexneri 2a str. 2457T]
gi|333019317|gb|EGK38600.1| phage/plasmid primase [Shigella flexneri K-304]
Length = 582
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 55/241 (22%), Positives = 100/241 (41%), Gaps = 21/241 (8%)
Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY 476
I + + S L +G LDL+TG+ T E +IT G + P + D +
Sbjct: 216 IAEPMGEPSGDLLPFANGALDLKTGEFSPHTPENWITTHNGIEYTPPAPGENIRDNALNF 275
Query: 477 FE------SEEVMDYFTRCVGMALLGGNKA--QRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528
+ ++ C + ++ N+ Q FI G GGSGKST ++ G Q
Sbjct: 276 HKWLEHAAGKDQRKMMRICAALYMIMANRYDWQMFIEATGDGGSGKSTFTHIASLLAGKQ 335
Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588
++AE M + G+A +++GSR++++++ + IK++TGGD +
Sbjct: 336 NTVSAE----MTSLDDAGGRA-----QVVGSRLIVLADQPKYTG-EGTGIKKITGGDPVE 385
Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQK 646
Y ++ + N +F RR ++ FD + A +D +K
Sbjct: 386 INPKYEKRFTAVIRAVVLATNNNPMIFTERAGGV-ARRRVIFRFDNIVSEAEKDRELPEK 444
Query: 647 L 647
+
Sbjct: 445 I 445
>gi|332759427|gb|EGJ89735.1| phage/plasmid primase [Shigella flexneri 2747-71]
Length = 582
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 55/241 (22%), Positives = 100/241 (41%), Gaps = 21/241 (8%)
Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY 476
I + + S L +G LDL+TG+ T E +IT G + P + D +
Sbjct: 216 IAEPMGEPSGDLLPFANGALDLKTGEFSPHTPENWITTHNGIEYTPPAPGENIRDNALNF 275
Query: 477 FE------SEEVMDYFTRCVGMALLGGNKA--QRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528
+ ++ C + ++ N+ Q FI G GGSGKST ++ G Q
Sbjct: 276 HKWLEHAAGKDQRKMMRICAALYMIMANRYDWQMFIEATGDGGSGKSTFTHIASLLAGKQ 335
Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588
++AE M + G+A +++GSR++++++ + IK++TGGD +
Sbjct: 336 NTVSAE----MTSLDDAGGRA-----QVVGSRLIVLADQPKYTG-EGTGIKKITGGDPVE 385
Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQK 646
Y ++ + N +F RR ++ FD + A +D +K
Sbjct: 386 INPKYEKRFTAVIRAVVLATNNNPMIFTERAGGV-ARRRVIFRFDNIVSEAEKDRELPEK 444
Query: 647 L 647
+
Sbjct: 445 I 445
>gi|251793975|ref|YP_003008707.1| D5 N like family [Aggregatibacter aphrophilus NJ8700]
gi|247535374|gb|ACS98620.1| D5 N like family [Aggregatibacter aphrophilus NJ8700]
Length = 607
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 64/269 (23%), Positives = 123/269 (45%), Gaps = 39/269 (14%)
Query: 397 EENSKAKSTAQSLEA-GSIFSITSDLLDSSS-RFLGEQDGILDLETGQKVKPTKELYI-- 452
+E K T +SL+A + +I +D + + + F+G Q+G+L +TG+ + + ++
Sbjct: 213 DEQGYNKYTVRSLKAIADLVAIKADEIPTQNPDFIGFQNGVLSKKTGEFMPHKIDHFLRS 272
Query: 453 -------TKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIH 505
T+S TP + ++++ VS ++ + + + M L ++ F+
Sbjct: 273 IEKFDCDTRSQNTPHFD-----DWIEFVSNGNQNRK--NAILAGLYMVLTNRHEWGLFLE 325
Query: 506 IRGVGGSGKSTLMNLIKYAFG--NQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVI 563
G G+GKS + G N IN + +I + R GK+ +
Sbjct: 326 ATGTAGAGKSVFSRIASIINGESNTGYINLQELEIDRKRAMLIGKS------------LA 373
Query: 564 ISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP--FIVPNKHLFVRNPDD 621
IS + + +A ++K +TGGD +T +L Y + ++ TP +V N L + +
Sbjct: 374 ISPDQKPYKGSADELKAITGGDNVTVKLVYVDDFA---VKLTPVFMLVTNYPLLFTDRNG 430
Query: 622 AWWRRYIVIPFDK--PIANRDASFAQKLE 648
RR I+IPFD+ P +D F +K++
Sbjct: 431 GIARRRIIIPFDRAIPKEKKDVHFTEKVQ 459
>gi|307627703|gb|ADN72007.1| nucleic acid independent nucleoside triphosphatase; phage DNA
primase [Escherichia coli UM146]
Length = 535
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 55/241 (22%), Positives = 100/241 (41%), Gaps = 21/241 (8%)
Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY 476
I + + S L +G LDL+TG+ T E +IT G + P + D +
Sbjct: 169 IAEPMGEPSGDLLPFANGALDLKTGEFSPHTPENWITTHNGIEYTPPAPGENIRDNAPNF 228
Query: 477 FE------SEEVMDYFTRCVGMALLGGNKA--QRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528
+ ++ C + ++ N+ Q FI G GGSGKST ++ G Q
Sbjct: 229 HKWLEHAAGKDPRKMMRICAALYMIMANRYDWQMFIEATGDGGSGKSTFTHIASLLAGKQ 288
Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588
++AE M + G+A +++GSR++++++ + IK++TGGD +
Sbjct: 289 NTVSAE----MTSLDDAGGRA-----QVVGSRLIVLADQPKYTG-EGTGIKKITGGDPVE 338
Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQK 646
Y ++ + N +F RR ++ FD + A +D +K
Sbjct: 339 INPKYEKRFTAVIRAVVLATNNNPMIFTERAGGV-ARRRVIFRFDNIVSEAEKDRELPEK 397
Query: 647 L 647
+
Sbjct: 398 I 398
>gi|307591546|ref|YP_003900345.1| primase P4 [Cyanothece sp. PCC 7822]
gi|306986400|gb|ADN18279.1| primase P4 [Cyanothece sp. PCC 7822]
Length = 1012
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 64/276 (23%), Positives = 117/276 (42%), Gaps = 26/276 (9%)
Query: 433 DGILDLETGQKVKPTKELYITKSTGTPF-VEGEPSQEFLDLVSGYFESEEVMDYFTRCVG 491
D +LDL TG+ ++ + Y+T P+ V + E + ++ S C
Sbjct: 426 DCVLDLYTGKTIEHSPNNYLTWVLPRPYNVPLQSWTEIDNWLTEATRSNAAHKQILLCYA 485
Query: 492 MALLGGNK-AQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKAN 550
A+L Q+F+H+ G GGSGKST MNL+ G Q I+ + + + +
Sbjct: 486 AAVLRRRADLQKFLHLIGTGGSGKSTFMNLLVALVGQQNTISLDFTSLNEKD-------- 537
Query: 551 PSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVP 610
++ G + I + + + N + K++TG D + R Y + ++ +
Sbjct: 538 -AVAEAFGKVLAIFPDQDSAGK-NISNFKKITGQDLLRGRRLYKDGFNFRFEGMCA-VSS 594
Query: 611 NKHLFVRNPDDAWWRRYIVIPF-----DKPIANRDASFAQKLE--TKYTLEAKKWFLKGV 663
N +F RR +++PF D + N + F +L T Y L + +
Sbjct: 595 NNPIFHSGSGRWLTRRVLMVPFELAVPDGKVRNLEKEFEPELSAFTHYLLSIPE---TQI 651
Query: 664 KAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD 699
+A + KGL+ +V K E + +D +W++D
Sbjct: 652 EATL-KGLNKK--QVISKTLWESQIRSDGLASWLND 684
>gi|48696691|ref|YP_024985.1| putative integrase [Vibrio phage VP5]
gi|40806154|gb|AAR92072.1| putative integrase [Vibrio phage VP5]
Length = 762
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 74/295 (25%), Positives = 117/295 (39%), Gaps = 63/295 (21%)
Query: 10 AKQAIHNGFKLIPLRL-GDKRPQRLGKWEEQLLSSEK--IDKLPACG-------FGFVCG 59
A+ I NG +IP+ G P ++ Q S K ID G G CG
Sbjct: 25 ARFYIKNGLYVIPVMPNGKSLPSKMYNIGYQHASKNKNTIDSWFGVGGRFRGFNLGIACG 84
Query: 60 VGEQPLYAFDIDSKDEKTANTFKDTFEIL---HGTPIVRIGQKPKILIPFRMNKEGIKKK 116
++A DID +D K F D IL +G + I + P + + K
Sbjct: 85 -KRGGVFAVDIDVEDSKGNRGF-DNLAILEEKYGKLVAPIQETPTGGRHYLFQWDKYAKS 142
Query: 117 KTTESTQGHLDILG-----CGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVE 171
+ + + +D G C + VA+ + + EYTW+ P + DV
Sbjct: 143 SSGKIAKA-IDTRGGDEDSCKSHIVAWP-SVRDEGEYTWSMP------------TLGDVP 188
Query: 172 YLFKFFQE-ITVPLVKDKKSIIPSKTWTNNNNR------------QYTNREITAFLSCFG 218
+ K+ + + VP WT N NR +YT R+I L
Sbjct: 189 EIPKWISDALGVP-------------WTGNMNRGSEEIDEDDLETRYTPRQIWRMLEYID 235
Query: 219 EEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFD 273
+ +DEW+ V+ AVH + +G E+A RWS++G+ Y + + +W +FD
Sbjct: 236 PD--ELEYDEWLAVLQAVHSQYP-DDQGYELADRWSQRGARYKPDEVSIRWQSFD 287
>gi|48696649|ref|YP_024428.1| integrase [Vibrio phage VP2]
gi|40950047|gb|AAR97638.1| integrase [Vibrio phage VP2]
Length = 762
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 74/295 (25%), Positives = 117/295 (39%), Gaps = 63/295 (21%)
Query: 10 AKQAIHNGFKLIPLRL-GDKRPQRLGKWEEQLLSSEK--IDKLPACG-------FGFVCG 59
A+ I NG +IP+ G P ++ Q S K ID G G CG
Sbjct: 25 ARFYIKNGLYVIPVMPNGKSLPSKMYNIGYQHASKNKNTIDSWFGVGGRFRGFNLGIACG 84
Query: 60 VGEQPLYAFDIDSKDEKTANTFKDTFEIL---HGTPIVRIGQKPKILIPFRMNKEGIKKK 116
++A DID +D K F D IL +G + I + P + + K
Sbjct: 85 -KRGGVFAVDIDVEDSKGNRGF-DNLAILEEKYGKLVAPIQETPTGGRHYLFQWDKYAKS 142
Query: 117 KTTESTQGHLDILG-----CGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVE 171
+ + + +D G C + VA+ + + EYTW+ P + DV
Sbjct: 143 SSGKIAKA-IDTRGGDEDSCKSHIVAWP-SVRDEGEYTWSMP------------TLGDVP 188
Query: 172 YLFKFFQE-ITVPLVKDKKSIIPSKTWTNNNNR------------QYTNREITAFLSCFG 218
+ K+ + + VP WT N NR +YT R+I L
Sbjct: 189 EIPKWISDALGVP-------------WTGNMNRGSEEIDEDDLETRYTPRQIWRMLEYID 235
Query: 219 EEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFD 273
+ +DEW+ V+ AVH + +G E+A RWS++G+ Y + + +W +FD
Sbjct: 236 PD--ELEYDEWLAVLQAVHSQYP-DDQGYELADRWSQRGARYKPDEVSIRWQSFD 287
>gi|333004948|gb|EGK24468.1| phage/plasmid primase, P4 family [Shigella flexneri VA-6]
Length = 582
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 55/243 (22%), Positives = 99/243 (40%), Gaps = 25/243 (10%)
Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY 476
I + + S L +G LDL+TG+ T E +IT G + P + D +
Sbjct: 216 IAEPMGEPSGDLLPFANGALDLKTGEFSPHTPENWITTHNGIEYTPPAPGENIRDNALNF 275
Query: 477 FE------SEEVMDYFTRCVGMALLGGNKA--QRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528
+ ++ C + ++ N+ Q FI G GGSGKST ++ G Q
Sbjct: 276 HKWLEHAAGKDQRKMMRICAALYMIMANRYDWQMFIEATGDGGSGKSTFTHIASLLAGKQ 335
Query: 529 YVINAEAS--DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDC 586
++AE + D RP +++GSR++++++ + IK++TGGD
Sbjct: 336 NTVSAEMTSLDDAGGRP-----------QVVGSRLIVLADQPKYTG-EGTGIKKITGGDP 383
Query: 587 MTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFA 644
+ Y ++ + N +F RR ++ FD + A +D
Sbjct: 384 VEINPKYEKRFTAVIRAVVLATNNNPMIFTERAGGV-ARRRVIFRFDNIVSEAEKDRELP 442
Query: 645 QKL 647
+K+
Sbjct: 443 EKI 445
>gi|332761077|gb|EGJ91364.1| phage/plasmid primase [Shigella flexneri K-671]
Length = 532
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 55/241 (22%), Positives = 100/241 (41%), Gaps = 21/241 (8%)
Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY 476
I + + S L +G LDL+TG+ T E +IT G + P + D +
Sbjct: 166 IAEPMGEPSGDLLPFANGALDLKTGEFSPHTPENWITTHNGIEYTPPAPGENIRDNALNF 225
Query: 477 FE------SEEVMDYFTRCVGMALLGGNKA--QRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528
+ ++ C + ++ N+ Q FI G GGSGKST ++ G Q
Sbjct: 226 HKWLEHAAGKDQRKMMRICAALYMIMANRYDWQMFIEATGDGGSGKSTFTHIASLLAGKQ 285
Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588
++AE M + G+A +++GSR++++++ + IK++TGGD +
Sbjct: 286 NTVSAE----MTSLDDAGGRA-----QVVGSRLIVLADQPKYTG-EGTGIKKITGGDPVE 335
Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQK 646
Y ++ + N +F RR ++ FD + A +D +K
Sbjct: 336 INPKYEKRFTAVIRAVVLATNNNPMIFTERAGGV-ARRRVIFRFDNIVSEAEKDRELPEK 394
Query: 647 L 647
+
Sbjct: 395 I 395
>gi|229890393|sp|Q8V9U4|H962R_ASFM2 RecName: Full=Putative helicase C962R
Length = 962
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 87/212 (41%), Gaps = 10/212 (4%)
Query: 422 LDSSSRFLGEQDGILDLET--GQKVKPTKELYITKSTGT---PFVEGEP-SQEFLDLVSG 475
LD++ LG +G+L +ET + + E I + T PF P ++ L+ +
Sbjct: 544 LDTNPHLLGVGNGVLSIETIPAKLINHFHEHPIHQYTHICYEPFNPENPWTKLLLNALQD 603
Query: 476 YFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535
+ + + A+ G K + G G +GK+ LM L+ G+ Y
Sbjct: 604 IIPELDARLWIMFYLSTAIFRGLKEALMLLWLGGGCNGKTFLMRLVAMVLGDHYASKLNI 663
Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTG-GDCMTARLNYG 594
S + R A K N + +RL G ETN+++ +N +++K+M GD LN
Sbjct: 664 SLLTSCRE-TAEKPNSAFMRLKGRGYGYFEETNKSEVLNTSRLKEMVNPGDVTARELNQK 722
Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRR 626
+ A+ N + + D WRR
Sbjct: 723 QESFQMTATMV--AASNYNFIIDTTDHGTWRR 752
>gi|218689534|ref|YP_002397746.1| nucleic acid independent nucleoside triphosphatase; phage DNA
primase [Escherichia coli ED1a]
gi|218427098|emb|CAR07979.2| nucleic acid independent nucleoside triphosphatase; phage DNA
primase [Escherichia coli ED1a]
Length = 582
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 51/225 (22%), Positives = 93/225 (41%), Gaps = 19/225 (8%)
Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY 476
I + + S L +G+LDL+ G+ T E +IT G + P + D +
Sbjct: 216 IAEPMGEPSGDLLPFANGVLDLKAGEFSPHTPENWITTHNGIEYTPPAPGENIRDNAPNF 275
Query: 477 FE------SEEVMDYFTRCVGMALLGGNKA--QRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528
+ ++ C + ++ N+ Q FI G GGSGKST ++ G Q
Sbjct: 276 HKWLEHAAGKDPRKMMRICAALYMIMANRYDWQMFIEATGEGGSGKSTFTHIASLLAGKQ 335
Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588
++AE M + G+A +++GSR++++++ + IK++TGGD +
Sbjct: 336 NTVSAE----MTSLDDAGGRA-----QVVGSRLIVLADQPKYTG-EGTGIKKITGGDPVE 385
Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFD 633
Y ++ + N +F RR ++ FD
Sbjct: 386 INPKYEKRFTAVIRAVVLATNNNPMIFTERAGGV-SRRRVIFRFD 429
>gi|323969627|gb|EGB64914.1| phage/plasmid primase [Escherichia coli TA007]
Length = 582
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/241 (22%), Positives = 100/241 (41%), Gaps = 21/241 (8%)
Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY 476
I + + S L +G LDL+TG+ T E +IT G + P + D +
Sbjct: 216 IAEPMGEPSGDLLPFANGALDLKTGEFSPHTPENWITTHNGIEYTPPAPGENIRDNAPNF 275
Query: 477 FE------SEEVMDYFTRCVGMALLGGNKA--QRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528
+ ++ C + ++ N+ Q FI G GGSGKST ++ G Q
Sbjct: 276 HKWLEHAAGKDPRKMMRICAALYMIMANRYDWQMFIEATGDGGSGKSTFTHIASLLAGKQ 335
Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588
++AE M + G+A +++GSR++++++ + IK++TGGD +
Sbjct: 336 NTVSAE----MTSLDDAGGRA-----QVVGSRLIVLADQPKYTG-EGTGIKKITGGDPVE 385
Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQK 646
Y ++ + N +F RR ++ FD + A +D ++
Sbjct: 386 INPKYEKRFTAVIRAVVLATNNNPMIFTERAGGV-ARRRVIFRFDNIVSEAEKDRELPER 444
Query: 647 L 647
+
Sbjct: 445 I 445
>gi|217324275|ref|ZP_03440359.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str.
TW14588]
gi|217320496|gb|EEC28920.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str.
TW14588]
Length = 584
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 79/177 (44%), Gaps = 18/177 (10%)
Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY 476
I + + S L +G LDL+TG+ T E +IT G + P + D +
Sbjct: 218 IAEPMGEPSGDLLPFANGALDLKTGEFSPHTPENWITTHNGIEYTPPAPGENIRDNAPNF 277
Query: 477 FE------SEEVMDYFTRCVGMALLGGNKA--QRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528
+ ++ C + ++ N+ Q FI G GGSGKST ++ G Q
Sbjct: 278 HKWLDHAAGKDPRKMMRICAALYMIMANRYDWQMFIEATGDGGSGKSTFTHIASLLAGKQ 337
Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGD 585
++AE M + G+A +++GSR++++++ + IK++TGGD
Sbjct: 338 NTVSAE----MTSLDDAGGRA-----QVVGSRLIVLADQPKYTG-EGTGIKKITGGD 384
>gi|191172101|ref|ZP_03033645.1| bacteriophage P4 DNA primase [Escherichia coli F11]
gi|300991771|ref|ZP_07179634.1| phage/plasmid primase, P4 family protein [Escherichia coli MS
200-1]
gi|190907628|gb|EDV67223.1| bacteriophage P4 DNA primase [Escherichia coli F11]
gi|300305525|gb|EFJ60045.1| phage/plasmid primase, P4 family protein [Escherichia coli MS
200-1]
Length = 584
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 61/245 (24%), Positives = 107/245 (43%), Gaps = 29/245 (11%)
Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTG---TPFVEGE------PS- 466
I + + S L +G LDL+TG+ + E +IT G TP V GE P+
Sbjct: 218 IAEPMGEPSGDLLPFANGALDLKTGEFSPHSPENWITTHNGIEYTPPVPGENIRDNAPNF 277
Query: 467 QEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKA--QRFIHIRGVGGSGKSTLMNLIKYA 524
++LD +G ++ C + ++ N+ Q FI G GGSGKST ++
Sbjct: 278 HKWLDHAAG----KDPGKMMRICAALYMIMANRYDWQMFIEATGDGGSGKSTFTHIASLL 333
Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGG 584
G Q ++AE M + G+A +++GSR++++++ + IK++TGG
Sbjct: 334 AGKQNTVSAE----MTSLDDAGGRA-----QVVGSRLIVLADQPKYTG-EGTGIKKITGG 383
Query: 585 DCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDAS 642
D + Y ++ + N +F RR ++ FD + A +D
Sbjct: 384 DPVEINPKYEKRFTAVIRAVVLATNNNPMIFTERAGGV-ARRRVIFRFDNIVSEAEKDRE 442
Query: 643 FAQKL 647
+K+
Sbjct: 443 LPEKI 447
>gi|281600549|gb|ADA73533.1| Bacteriophage P4 DNA primase [Shigella flexneri 2002017]
Length = 499
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/241 (22%), Positives = 100/241 (41%), Gaps = 21/241 (8%)
Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY 476
I + + S L +G LDL+TG+ T E +IT G + P + D +
Sbjct: 133 IAEPMGEPSGDLLPFANGALDLKTGEFSPHTPENWITTHNGIEYTPPAPGENIRDNALNF 192
Query: 477 FE------SEEVMDYFTRCVGMALLGGNKA--QRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528
+ ++ C + ++ N+ Q FI G GGSGKST ++ G Q
Sbjct: 193 HKWLEHAAGKDQRKMMRICAALYMIMANRYDWQMFIEATGDGGSGKSTFTHIASLLAGKQ 252
Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588
++AE M + G+A +++GSR++++++ + IK++TGGD +
Sbjct: 253 NTVSAE----MTSLDDAGGRA-----QVVGSRLIVLADQPKYTG-EGTGIKKITGGDPVE 302
Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQK 646
Y ++ + N +F RR ++ FD + A +D +K
Sbjct: 303 INPKYEKRFTAVIRAVVLATNNNPMIFTERAGGV-ARRRVIFRFDNIVSEAEKDRELPEK 361
Query: 647 L 647
+
Sbjct: 362 I 362
>gi|324012997|gb|EGB82216.1| phage/plasmid primase, P4 family protein [Escherichia coli MS 60-1]
Length = 584
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 61/245 (24%), Positives = 107/245 (43%), Gaps = 29/245 (11%)
Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTG---TPFVEGE------PS- 466
I + + S L +G LDL+TG+ + E +IT G TP V GE P+
Sbjct: 218 IAEPMGEPSGDLLPFANGALDLKTGEFSPHSPENWITTHNGIEYTPPVPGENIRDNAPNF 277
Query: 467 QEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKA--QRFIHIRGVGGSGKSTLMNLIKYA 524
++LD +G ++ C + ++ N+ Q FI G GGSGKST ++
Sbjct: 278 HKWLDHAAG----KDPGKMMRICAALYMIMANRYDWQMFIEATGDGGSGKSTFTHIASLL 333
Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGG 584
G Q ++AE M + G+A +++GSR++++++ + IK++TGG
Sbjct: 334 AGKQNTVSAE----MTSLDDAGGRA-----QVVGSRLIVLADQPKYTG-EGTGIKKITGG 383
Query: 585 DCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDAS 642
D + Y ++ + N +F RR ++ FD + A +D
Sbjct: 384 DPVEINPKYEKRFTAVIRAVVLATNNNPMIFTERAGGV-ARRRVIFRFDNIVSEAEKDRE 442
Query: 643 FAQKL 647
+K+
Sbjct: 443 LPEKI 447
>gi|254504141|ref|ZP_05116292.1| hypothetical protein SADFL11_4180 [Labrenzia alexandrii DFL-11]
gi|222440212|gb|EEE46891.1| hypothetical protein SADFL11_4180 [Labrenzia alexandrii DFL-11]
Length = 1293
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/186 (26%), Positives = 77/186 (41%), Gaps = 24/186 (12%)
Query: 15 HNGFKLIPLRLGDKRPQRLG-------KWEE---------QLLSSEKIDKLPACGFGFVC 58
N ++P DKRP + G W + L +D L G +
Sbjct: 87 QNNVHVLPAMPKDKRPGKYGGSGWFGGTWGQFTNPGGETIYPLKERALDVLQHHGGAGIT 146
Query: 59 GVGEQPLYAFDIDSKDEKTANTFKDTFEIL-HGTPIVRIGQKPKILIPFRMNKEGIKKKK 117
G + A D+D D A F+ E+L +P RIG+ PK L +R K IK
Sbjct: 147 LGGHHNIAAIDMDVMDPVLAAEFESVLELLCDKSPFERIGKSPKKLWLYRTEKP-IKSYA 205
Query: 118 T----TESTQGHLDILG-CGQYFVAYNIHPKTKKEYTWTTPP-HRFKVEDTPLLSEEDVE 171
+ T+S + +++ Q+ V Y +H TK+ YTW + V D PL+S + +
Sbjct: 206 SGEWFTDSGKNQVELRAQSNQFIVCYGVHKDTKRPYTWPNASLYDCDVSDIPLISADALI 265
Query: 172 YLFKFF 177
+ + F
Sbjct: 266 DMLEVF 271
>gi|325842743|ref|ZP_08167778.1| phage/plasmid primase, P4 family, C-terminal domain protein
[Turicibacter sp. HGF1]
gi|325489543|gb|EGC91908.1| phage/plasmid primase, P4 family, C-terminal domain protein
[Turicibacter sp. HGF1]
Length = 570
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 63/281 (22%), Positives = 115/281 (40%), Gaps = 28/281 (9%)
Query: 398 ENSKAKSTAQSL--EAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKS 455
E S KS + L +AG + + D +R+L ++GIL L + K + +
Sbjct: 196 EVSYGKSVLEQLRLDAGRLEYVEED-----TRYLNLKNGILRLSDLKLFKHSPSIITLSQ 250
Query: 456 TGTPFVEGEPSQEFLDLVSGYFESE-EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGK 514
+ FL ++ FE + E + G L K Q+F G G +GK
Sbjct: 251 LPVGYDLNAKCPNFLKYLNTVFEGDCERISLVQEVFGYCLTTDTKLQKFFIFYGNGSNGK 310
Query: 515 STLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN-DEI 573
S L N+++ GN N +S + Q G+ + R+ I E++ + + +
Sbjct: 311 SVLANIMRKVIGND---NCSSSTLEQLSKQFGGQV------IQDKRVNISGESDSSRNVL 361
Query: 574 NAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHL-FVRNPDDAWWRRYIVIPF 632
N ++K +TG D + + N P + IV + H + D + RR + IPF
Sbjct: 362 NTQQLKLITGEDMVQVESKFKNPIMIRP--YVKLIVLSNHYPKTEDTSDGFLRRCLFIPF 419
Query: 633 D-------KPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
+ + +++A + L++K E F+ ++ Y
Sbjct: 420 NMRFVEEGTKLKDKEAYKDKDLQSKLDSELDGIFMWALQGY 460
>gi|110805144|ref|YP_688664.1| bacteriophage P4 DNA primase [Shigella flexneri 5 str. 8401]
gi|110614692|gb|ABF03359.1| Bacteriophage P4 DNA primase [Shigella flexneri 5 str. 8401]
Length = 582
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/241 (22%), Positives = 100/241 (41%), Gaps = 21/241 (8%)
Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY 476
I + + S L +G LDL+TG+ T E +IT G + P + D +
Sbjct: 216 IAEPMGEPSGDLLPFANGALDLKTGEFSPHTPENWITTHNGIEYTPPAPGENIRDNALNF 275
Query: 477 FE------SEEVMDYFTRCVGMALLGGNKA--QRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528
+ ++ C + ++ N+ Q FI G GGSGKST ++ G Q
Sbjct: 276 HKWLEHAAGKDQRKMMRICAALYMIMVNRYDWQMFIEATGDGGSGKSTFTHIASLLAGKQ 335
Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588
++AE M + G+A +++GSR++++++ + IK++TGGD +
Sbjct: 336 NTVSAE----MTSLDDAGGRA-----QVVGSRLIVLADQPKYTG-EGTGIKKITGGDPVE 385
Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQK 646
Y ++ + N +F RR ++ FD + A +D +K
Sbjct: 386 INPKYEKRFTAVIRAVVLATNNNPMIFTERAGGV-ARRRVIFRFDNIVSEAEKDRELPEK 444
Query: 647 L 647
+
Sbjct: 445 I 445
>gi|333005686|gb|EGK25204.1| phage/plasmid primase, P4 family [Shigella flexneri K-218]
Length = 535
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/241 (22%), Positives = 99/241 (41%), Gaps = 21/241 (8%)
Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY 476
I + + S L +G LDL+TG+ T E +IT G + P + D +
Sbjct: 169 IAEPMGEPSGDLLPFANGALDLKTGEFSPHTPENWITTHNGIEYTPPAPGENIRDNALNF 228
Query: 477 FE------SEEVMDYFTRCVGMALLGGNKA--QRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528
+ ++ C + ++ N+ Q FI G GGSGKST ++ G Q
Sbjct: 229 HKWLEHAAGKDQRKMMRICAALYMIMANRYDWQMFIEATGDGGSGKSTFTHIASLLAGKQ 288
Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588
++AE M + G+A +++GSR++++++ + IK++TGGD
Sbjct: 289 NTVSAE----MTSLDDAGGRA-----QVVGSRLIVLADQPKYTG-EGTGIKKITGGDPAE 338
Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQK 646
Y ++ + N +F RR ++ FD + A +D +K
Sbjct: 339 INPKYEKRFTAVIRAVVLATNNNPMIFTERAGGV-ARRRVIFRFDNIVSEAEKDRELPEK 397
Query: 647 L 647
+
Sbjct: 398 I 398
>gi|332758300|gb|EGJ88623.1| phage/plasmid primase [Shigella flexneri 4343-70]
Length = 498
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/241 (22%), Positives = 99/241 (41%), Gaps = 21/241 (8%)
Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY 476
I + + S L +G LDL+TG+ T E +IT G + P + D +
Sbjct: 132 IAEPMGEPSGDLLPFANGALDLKTGEFSPHTPENWITTHNGIEYTPPAPGENIRDNALNF 191
Query: 477 FE------SEEVMDYFTRCVGMALLGGNKA--QRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528
+ ++ C + ++ N+ Q FI G GGSGKST ++ G Q
Sbjct: 192 HKWLEHAAGKDQRKMMRICAALYMIMANRYDWQMFIEATGDGGSGKSTFTHIASLLAGKQ 251
Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588
++AE M + G+A +++GSR++++++ + IK++TGGD
Sbjct: 252 NTVSAE----MTSLDDAGGRA-----QVVGSRLIVLADQPKYTG-EGTGIKKITGGDPAE 301
Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQK 646
Y ++ + N +F RR ++ FD + A +D +K
Sbjct: 302 INPKYEKRFTAVIRAVVLATNNNPMIFTERAGGV-ARRRVIFRFDNIVSEAEKDRELPEK 360
Query: 647 L 647
+
Sbjct: 361 I 361
>gi|150019806|ref|YP_001312060.1| ATPase-like protein [Clostridium beijerinckii NCIMB 8052]
gi|149906271|gb|ABR37104.1| ATPase-like protein [Clostridium beijerinckii NCIMB 8052]
Length = 615
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 75/317 (23%), Positives = 125/317 (39%), Gaps = 26/317 (8%)
Query: 423 DSSSRFLGEQDG-ILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFL-DLVSGYFE-- 478
D ++ + DG I++L TG+ T+ I ++ V E S +F+ + +S Y +
Sbjct: 224 DLNNNIICSNDGKIINLNTGEIKNATRNDMILFTSEYNLVNKEESIKFMSEKMSIYLDII 283
Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538
E +D+ + +L Q I + G G +GKS+L N+I+ F +
Sbjct: 284 GNERLDFILDLIAYKMLN-RSLQSAIFMIGAGATGKSSLKNIIRDLFKTESSTIPYDYMT 342
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598
NR + L L +I SE E I++AK K++ +AR +
Sbjct: 343 TMNRGNSDASRDDILASLDNKKIAFCSEGEEEKIISSAKFKKILSHADESARKTNEGLTN 402
Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK--PIANRDASFAQKLETKYTLEAK 656
S + N D A RR I + FDK PI R+A + Y E
Sbjct: 403 VSLQNLDIVFDTNAMPSFSTMDSAISRRLIFVKFDKPIPIEKRNADY-------YKDEIF 455
Query: 657 KWFLKGVKAYISKGLD-----VDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEES 711
F ++ K +D ++IP+ C+K T T + +D + +
Sbjct: 456 PNFDYVFSYFVYKAIDMIGKKLNIPD-CVK------NDTSTKLSEVDSLLSFSKRIITPF 508
Query: 712 HSLAKSYSEYREQELNY 728
YSE+ E+ LN+
Sbjct: 509 EGSYIKYSEFEEEYLNF 525
>gi|189499201|ref|YP_001958671.1| P4 family phage/plasmid primase [Chlorobium phaeobacteroides BS1]
gi|189494642|gb|ACE03190.1| phage/plasmid primase, P4 family [Chlorobium phaeobacteroides BS1]
Length = 486
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/232 (20%), Positives = 102/232 (43%), Gaps = 33/232 (14%)
Query: 478 ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
+S+ V+ F VG + G K ++ + + G G +GKS +++ G+ + +
Sbjct: 208 DSQRVLAEF---VGYVFIRGLKLEKALMLYGGGANGKSVFFDILLALLGSDNASSYSLAS 264
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
+ +R + R M + ++ + N ++ A+ KQ+ G+ + ARL YG
Sbjct: 265 LTDSRN--------TYYRAMLADKLVNYASEINSKVEASIFKQLVSGEPVEARLPYGK-- 314
Query: 598 SESPASFTPFIVPNKHLFVRNPDD---------AWWRRYIVIPFDKPIANR--DASFAQK 646
PFI+ + N ++ A++RR+++IPF I R D A K
Sbjct: 315 --------PFILKEYAKLIFNANELPRDVEHTNAYFRRFLIIPFTVTIPEREQDKELAGK 366
Query: 647 LETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID 698
+ W L+G++ + + ++ + A ++ ++ +D+ Q ++D
Sbjct: 367 IIASELPGVFNWALEGLRRLLQQK-NLSNCDAARHAVDQYKRESDSVQMFVD 417
>gi|323978458|gb|EGB73541.1| poxvirus D5 protein [Escherichia coli TW10509]
Length = 777
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 103/250 (41%), Gaps = 27/250 (10%)
Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTG---TPFVEGEPSQ-------EFLDLVS 474
+ R +G ++G+LD ++G +K ++ TP VEGE + +LD +
Sbjct: 410 ARRLIGFRNGVLDTQSGLFSPHSKSHWLRTLCDVDFTPPVEGETLETHAPNFWRWLDRAA 469
Query: 475 GYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
G +S + D + M L Q F+ + G GGSGKS L + G +A+
Sbjct: 470 G--KSPQKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATLLAGEDNATSAD 527
Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
D +++ A SLIRL E + A +K +TGGD ++ Y
Sbjct: 528 I-DTLEDPRKRASLIGFSLIRL---------PDQEKWSGDGAGLKAITGGDAVSVDPKYQ 577
Query: 595 NTYSES-PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKY 651
N YS PA V N + + RR ++I F + IA RD K+ +
Sbjct: 578 NPYSTHIPAVI--LAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPEERDPQLRDKIAREL 635
Query: 652 TLEAKKWFLK 661
+ ++ K
Sbjct: 636 AVIVRQLMQK 645
>gi|324117000|gb|EGC10912.1| phage/plasmid primase [Escherichia coli E1167]
Length = 590
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 72/307 (23%), Positives = 121/307 (39%), Gaps = 47/307 (15%)
Query: 421 LLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTG---TPFVEGEPSQE-------FL 470
+ + S + ++G+ D+ +G+ + + E +IT G TP GE + +L
Sbjct: 220 MREQSDTIIPFENGVYDITSGRFLPHSPEHWITSHNGIYYTPPAPGENIHDHAPHFHRWL 279
Query: 471 DLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530
+GY S+ M + M L Q FI G GGSGKS + + G Q
Sbjct: 280 SHAAGYDSSK--MKRICAALFMVLANRYDWQLFIEATGEGGSGKSMFTQIARMLAGEQ-- 335
Query: 531 INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN-DEINAAKIKQMTGGDCMTA 589
N SD M+ G+ +L+G ++I+ + + E N IK +TGGD +
Sbjct: 336 -NTAGSD-MKALDDAGGRE-----QLVGKSLIILPDQPKYFGEGNG--IKAITGGDPLQI 386
Query: 590 RLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKL 647
Y Y+ S I NK + RR ++ F+ PIA N+D +K+
Sbjct: 387 NPKYEKRYTTVLRSVV-LITNNKPMVFTERAGGISRRRVIFQFNNPIAEENKDTCLPKKI 445
Query: 648 ETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQG---------TDTYQAWID 698
+ + ++ ++ PE E+R G TD A+ +
Sbjct: 446 AAEIPVIVRRLL-----------VNFSDPEKARTLLLEQRDGEEAMEVKRHTDPLYAFCN 494
Query: 699 DCCDIGE 705
++GE
Sbjct: 495 HIVELGE 501
>gi|331682252|ref|ZP_08382871.1| bacteriophage P4 DNA primase [Escherichia coli H299]
gi|331079883|gb|EGI51062.1| bacteriophage P4 DNA primase [Escherichia coli H299]
Length = 583
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 79/177 (44%), Gaps = 18/177 (10%)
Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY 476
I + + S L +G LDL+TG+ T E +IT G + P + D +
Sbjct: 217 IAEPMGEPSGDLLPFANGALDLKTGEFSPHTPENWITTHNGIEYTPPAPGENIRDNAPNF 276
Query: 477 FE------SEEVMDYFTRCVGMALLGGNKA--QRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528
+ ++ C + ++ N+ Q FI G GGSGKST ++ G Q
Sbjct: 277 HKWLEHAAGKDPRKMMRICAALYMIMANRYDWQMFIEATGDGGSGKSTFTHIATLLAGKQ 336
Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGD 585
++AE M + G+A +++GSR++++++ + IK++TGGD
Sbjct: 337 NTVSAE----MTSLDDAGGRA-----QVVGSRLIVLADQPKYTG-EGTGIKKITGGD 383
>gi|304558208|gb|ADM40872.1| DNA primase [Edwardsiella tarda FL6-60]
Length = 777
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 102/250 (40%), Gaps = 27/250 (10%)
Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTG---TPFVEGEPSQ-------EFLDLVS 474
+ R +G ++G+LD ++G K ++ TP VEGE + +LD +
Sbjct: 410 ARRLIGFRNGVLDTQSGVFSPHHKSHWLCTLCDVDFTPPVEGETLETHAPNFWRWLDRAA 469
Query: 475 GYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
G +S + D + M L Q F+ + G GGSGKS L + G +A+
Sbjct: 470 G--KSPQKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATLLAGEDNATSAD 527
Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
D +++ A SLIRL E + A +K +TGGD ++ Y
Sbjct: 528 I-DTLEDPRKRASLIGFSLIRL---------PDQEKWSGDGAGLKAITGGDAVSVDPKYQ 577
Query: 595 NTYSES-PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKY 651
N YS PA V N + + RR ++I F + IA RD K+ +
Sbjct: 578 NPYSTHIPAVI--LAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPEERDPQLRDKIAREL 635
Query: 652 TLEAKKWFLK 661
+ ++ K
Sbjct: 636 AVIVRQLMQK 645
>gi|42761469|ref|NP_976264.1| primase [Acidianus ambivalens]
gi|3059074|emb|CAA12526.1| primase [Acidianus ambivalens]
Length = 909
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 73/162 (45%), Gaps = 18/162 (11%)
Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549
+G L K + + G SGKST + L+K G ++ ++ +
Sbjct: 556 IGYTLYPATKIKLAFMLLGPRDSGKSTFLQLLKKILGKHNTVSIRVKELFDSN------- 608
Query: 550 NPSLIRLMGSRIV-IISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPF- 607
N ++ + ++ + +ET E + + K +TGGD +T+ + + P +FTP+
Sbjct: 609 NRFVMGYLFHKLANLTAETKEYTINDIDRFKTLTGGDQVTSDVKFN-----GPITFTPYA 663
Query: 608 ---IVPNKHLFVRNPDD-AWWRRYIVIPFDKPIANRDASFAQ 645
I NK V + +D A+WRR+++I F N D F Q
Sbjct: 664 KIIIASNKLPNVSDKNDMAFWRRWLIIEFPNTFPNDDNWFRQ 705
>gi|204927104|ref|ZP_03218306.1| nucleoside triphosphatase, D5 family [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|204323769|gb|EDZ08964.1| nucleoside triphosphatase, D5 family [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
Length = 777
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/250 (25%), Positives = 103/250 (41%), Gaps = 27/250 (10%)
Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTG---TPFVEGEPSQ-------EFLDLVS 474
+ R +G ++G+LD ++G +K ++ TP VEGE + +LD +
Sbjct: 410 ARRLIGFRNGVLDTQSGLFSPHSKSHWLRTLCDVDFTPPVEGEMLETHAPNFWRWLDRAA 469
Query: 475 GYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
G +S + D + M L Q F+ + G GGSGKS L + G +A+
Sbjct: 470 G--KSPQKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATLLAGEDNATSAD 527
Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
D +++ A SLIRL E + A +K +TGGD ++ Y
Sbjct: 528 I-DTLEDPRKRASLIGFSLIRL---------PDQEKWSGDGAGLKAITGGDAVSVDPKYQ 577
Query: 595 NTYSES-PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKY 651
N YS PA V N + + RR ++I F + IA RD K+ +
Sbjct: 578 NPYSTHIPAVI--LAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPEERDPQLRDKIAREL 635
Query: 652 TLEAKKWFLK 661
+ ++ K
Sbjct: 636 AVIVRQLMQK 645
>gi|254559012|ref|YP_003066107.1| hypothetical protein METDI0390 [Methylobacterium extorquens DM4]
gi|254266290|emb|CAX22051.1| hypothetical protein METDI0390 [Methylobacterium extorquens DM4]
Length = 1433
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 78/184 (42%), Gaps = 20/184 (10%)
Query: 34 GKWEEQLLSSEKID----KLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTF-KDTFEIL 88
G+++++L + +ID P+ + G +A DID D + +N K + L
Sbjct: 163 GEYKDRLPTLGEIDWWSRFCPSHNVACILGAASGGTWALDIDVSDAELSNAIVKLADDHL 222
Query: 89 HGTPIVRIGQKPKILIPFR---MNKEGIKK----------KKTTESTQGHLDILGCGQYF 135
TP R+G+ P+I++ +R +++ G + + E + G +++LG G+
Sbjct: 223 GYTPFSRVGRVPRIVLVYRQAPVSEVGADQVIRVSPHRFAARPGEDSPGQIEVLGHGKPV 282
Query: 136 VAYNIHPKTKKEYTWT-TPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPS 194
+ +H T K + W PH E PL++ + + + P K P
Sbjct: 283 TFFGLHHGTGKYFIWVDRSPHVLGPEHAPLVTRQQYDAFLDAVHALH-PFAKPAVHEAPD 341
Query: 195 KTWT 198
WT
Sbjct: 342 AAWT 345
>gi|260577360|ref|ZP_05845331.1| ATPase-like protein [Rhodobacter sp. SW2]
gi|259020433|gb|EEW23758.1| ATPase-like protein [Rhodobacter sp. SW2]
Length = 814
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 64/262 (24%), Positives = 100/262 (38%), Gaps = 37/262 (14%)
Query: 461 VEGEPSQEFL--DLVSGYF----ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGV----- 509
V G P + L L++G F E++ D G A LG A + R V
Sbjct: 502 VPGTPPEGSLLHRLLTGSFKGDPEAQAKCDLLAEICGSAALG--YATHLLQPRAVVLHGM 559
Query: 510 -GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN 568
+GKS +NL + + + AS + +R ++ L+G + N
Sbjct: 560 AAENGKSQFLNLARGLLPPSAICSVPASQMGDDR---------HVLGLVGKLL------N 604
Query: 569 ENDEINAAKI-----KQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAW 623
+DE++A I K + GD + R Y + + F F D
Sbjct: 605 ASDELSAEAIASDAFKAVVTGDPVQGRDVYKSRVEFRSVAQNLFATNTLPSFKGGVDRGV 664
Query: 624 WRRYIVIPFDK--PIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLK 681
RR +VIPF + PI R A +++ + W + G I + + IPE C +
Sbjct: 665 QRRLMVIPFTRTIPIPERVADIGKRIASDEADLLLAWAVHGAARLIRQ-RNFAIPESCHR 723
Query: 682 AKEEERQGTDTYQAWIDDCCDI 703
A + G D AWID C +
Sbjct: 724 ALLDWVLGEDPVLAWIDACVRV 745
>gi|126727691|ref|ZP_01743523.1| hypothetical protein RB2150_15970 [Rhodobacterales bacterium
HTCC2150]
gi|126703107|gb|EBA02208.1| hypothetical protein RB2150_15970 [Rhodobacterales bacterium
HTCC2150]
Length = 598
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 80/317 (25%), Positives = 131/317 (41%), Gaps = 38/317 (11%)
Query: 467 QEFLDLVSGYFESEEVMD---YFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKY 523
+ FLD V + E E+ D +G +L+ + + F+ + G G +GKS L+ +++
Sbjct: 309 EAFLDQV--FREDEDRADKIRTVLELMGYSLMSHARHELFLMLIGPGANGKSVLLGVLEG 366
Query: 524 AFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTG 583
G V + S+ NR A L I++E + + I A++K +T
Sbjct: 367 LLGAANVAGVQPSN-FDNRFQRA--------HLHQKLANIVTELRQGEVIADAELKAITS 417
Query: 584 GDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASF 643
G+ T + N + P + T + N R+ DA +RR ++ F++ A +
Sbjct: 418 GEPATVEHKFQNPFVMRPFA-TCWFGTNHMPHTRDFSDALFRRATILKFNRTFAEHEQD- 475
Query: 644 AQKLETKYTLEAKKWFLKGVKAYISKGL-DVDIPEVCLKAKEEERQGTDTYQAWIDDCCD 702
L+ K E + AYI P+ ++AK+E + D ++DD CD
Sbjct: 476 -PMLKIKLLNELPGILNLALDAYIVTTFAGFTAPQSSIEAKQEWKLEADQVAQFVDDACD 534
Query: 703 IGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTL-----NLKQKGFIGGIKREKIE 757
N L K Y ++ D IS RTVT+ L GF GG + K
Sbjct: 535 ADPNGEVPIGHLYKFYGQW------ADDVGIS-RTVTMKILRDRLTTLGF-GGRRTGK-- 584
Query: 758 KEWKSKRIIKGLKLKPA 774
R + GL+LKP
Sbjct: 585 -----ARFVTGLRLKPG 596
>gi|167630917|ref|YP_001681416.1| primase, putative [Heliobacterium modesticaldum Ice1]
gi|167593657|gb|ABZ85405.1| primase, putative [Heliobacterium modesticaldum Ice1]
Length = 833
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/292 (20%), Positives = 119/292 (40%), Gaps = 12/292 (4%)
Query: 432 QDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVG 491
++G+ ++ G T E Y T + E +F+ + E+ G
Sbjct: 506 KNGLYNVLDGSFKAHTPEYYSTVQLKASYNENAECPKFMAFLQSILGDTEI-HLMQEIFG 564
Query: 492 MALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANP 551
L+ NKAQ+ + G +GKSTL+++ + ++ +E + N P ++
Sbjct: 565 YLLIPVNKAQKSFVLVGAPNAGKSTLLSV-----AQEILLGSEN---VSNIPWQSLSDRF 616
Query: 552 SLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPN 611
L G I ++ + K +TG D +TA N +S P + F
Sbjct: 617 KTAELFGKLANIFADLPSKSVDDNGIFKALTGEDYITAERKNKNPFSFKPYARLLFSCNE 676
Query: 612 KHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISK 669
+ + ++RR I+I F+ P+ RD + +KL ++ W L+G+K I+
Sbjct: 677 IPRNYGDRSEGFYRRLIIIRFENPVPPEKRDPNLIEKLASERD-GIFMWALEGLKRLIAN 735
Query: 670 GLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEY 721
G E + + +++ +++++CC + + L ++Y +Y
Sbjct: 736 GYAFSETEGTKAELQRYKVESNSALSFVEECCVLEDEAECVREELFQAYRDY 787
>gi|296101066|ref|YP_003611212.1| nucleoside triphosphatase, D5 family [Enterobacter cloacae subsp.
cloacae ATCC 13047]
gi|295055525|gb|ADF60263.1| nucleoside triphosphatase, D5 family [Enterobacter cloacae subsp.
cloacae ATCC 13047]
Length = 556
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 103/250 (41%), Gaps = 27/250 (10%)
Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTG---TPFVEGEPSQ-------EFLDLVS 474
+ R +G ++G+LD ++G +K ++ TP VEGE + +LD +
Sbjct: 189 ARRLIGFRNGVLDTQSGLFSPHSKSYWLRTLCDVDFTPPVEGETLETHAPNFWRWLDRAA 248
Query: 475 GYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
G ++ + D + M L Q F+ + G GGSGKS L + G +A+
Sbjct: 249 G--KNPQKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATLLAGEDNATSAD 306
Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
D +++ A SLIRL E + A +K +TGGD ++ Y
Sbjct: 307 I-DTLEDPRKRASLIGFSLIRL---------PDQEKWSGDGAGLKAITGGDAVSVDPKYQ 356
Query: 595 NTYSES-PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKY 651
N YS PA V N + + RR ++I F + IA RD K+ +
Sbjct: 357 NPYSTHIPAVI--LAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPEERDPQLRDKIAREL 414
Query: 652 TLEAKKWFLK 661
+ ++ K
Sbjct: 415 AVIVRQLMQK 424
>gi|87198666|ref|YP_495923.1| Phage or plasmid primase P4-like [Novosphingobium aromaticivorans
DSM 12444]
gi|87134347|gb|ABD25089.1| Phage or plasmid primase P4-like protein [Novosphingobium
aromaticivorans DSM 12444]
Length = 540
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/265 (22%), Positives = 107/265 (40%), Gaps = 26/265 (9%)
Query: 476 YFESEEVMDY-------FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528
+ E EVM + R GM L Q F +G G GKS +++ G
Sbjct: 202 WIERMEVMHHDPVQRTALQRIYGMTLTALISDQAFYIFQGKGQDGKSVTNDVVCQLHG-M 260
Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGS-RIVIISETNENDEINAAKIKQMTGGDCM 587
Y A+ ++ ++ ++RL G R+V++ E +N + KIKQ TG + M
Sbjct: 261 YARKADPKTFLEGPTQQSSGPQSDIVRLAGDVRLVVMDEPKKNSTWDGQKIKQATGSE-M 319
Query: 588 TARLNYGNTYSESPASFTPF--IVPNKHLFVRNPDD--AWWRRYIVIPF------DKPIA 637
AR ++ + SFTP ++ + + P D + RR+ + P+ +A
Sbjct: 320 IAR----GVHATTELSFTPHWQLIAECNGLPKAPSDDRGFRRRFKLYPWVVQFGVTPGVA 375
Query: 638 NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWI 697
+ + W +KG ++++ + V PE +A + WI
Sbjct: 376 DEPVHLVKARLIGEGSGVLNWMIKGCVEWLNERV-VPEPEAAKRATASFWSASSAMGEWI 434
Query: 698 DDCCDIGE-NLWEESHSLAKSYSEY 721
CD+ + EE+ L K++ ++
Sbjct: 435 ASHCDLSDPEAREEATPLYKAFRQF 459
>gi|319648621|ref|ZP_08002834.1| Gp60 protein [Bacillus sp. BT1B_CT2]
gi|317389313|gb|EFV70127.1| Gp60 protein [Bacillus sp. BT1B_CT2]
Length = 223
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 71/172 (41%), Gaps = 9/172 (5%)
Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637
+KQ+TGG+ M+AR Y E F F N V+ D+ WRR +IPF I
Sbjct: 2 VKQITGGEKMSARF-LRQEYFEFTPEFKVFFTTNHKPIVKGSDEGIWRRIRLIPFTVTIP 60
Query: 638 NR--DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQA 695
D QKL + +W ++G + +GL PE KA E R+ D
Sbjct: 61 KEKVDKKLPQKLAAEMP-GILRWAVEGCLKWQKEGLGE--PEAIKKATEGYREDMDILGP 117
Query: 696 WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGF 747
++ + C + E+ L Y +Y+ D + R ++ +GF
Sbjct: 118 FMQERCVQHPSAKIEAKEL---YKDYKNWCFENDEIELKNRAFYRQIEIRGF 166
>gi|161615642|ref|YP_001589607.1| hypothetical protein SPAB_03426 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|161365006|gb|ABX68774.1| hypothetical protein SPAB_03426 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
Length = 777
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 65/250 (26%), Positives = 99/250 (39%), Gaps = 27/250 (10%)
Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTG---TPFVEGEPSQ-------EFLDLVS 474
+ R +G ++G+LD TG K ++ TP VEGE + +LD +
Sbjct: 410 ARRLIGFRNGVLDTATGTFSPHHKSHWLRTLCDVDFTPPVEGETLETHAPNFWRWLDRAA 469
Query: 475 GYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
G E D + M L Q F+ + G GGSGKS L + G +A+
Sbjct: 470 G--GRPEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATLLAGEDNATSAD 527
Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
D +++ A SLIRL E + A +K +TGGD ++ Y
Sbjct: 528 I-DTLEDPRKRASLIGFSLIRL---------PDQEKWSGDGAGLKAITGGDAVSVDPKYQ 577
Query: 595 NTYSES-PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKY 651
N YS PA V N + + RR ++I F + IA RD K+ +
Sbjct: 578 NPYSTHIPAVI--LAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPDERDPQLKDKIAREL 635
Query: 652 TLEAKKWFLK 661
+ ++ K
Sbjct: 636 AVIVRQLMQK 645
>gi|172055298|ref|YP_001806625.1| hypothetical protein cce_5213 [Cyanothece sp. ATCC 51142]
gi|171701579|gb|ACB54559.1| hypothetical protein cce_5213 [Cyanothece sp. ATCC 51142]
Length = 785
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 79/172 (45%), Gaps = 18/172 (10%)
Query: 432 QDGILDLETGQKVKPTKELYITKSTG---TPFVEG--EPSQEFLDLVSGYFESEEVMDYF 486
++G+LDLET + + +T P + Q ++V G +++E++ +
Sbjct: 180 ENGVLDLETSKFHQHAPGFRLTSKLPRQYNPLATSWSKTDQWLTEVVKGDEKAKELLLCY 239
Query: 487 TRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEA 546
V L G Q F ++ G GG+GKST NL+ G Q + + ++
Sbjct: 240 MAAV---LRGRYDLQVFCYLIGSGGAGKSTFTNLLTQLVGEQNTVELDFDEL-------- 288
Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598
+IRL G R++I+++ + A K++TGGD ++ R + N+ S
Sbjct: 289 -DDKHEVIRLFGKRLLILADQDRVGR-KIANFKKLTGGDRLSGRYLFKNSMS 338
>gi|206601900|gb|EDZ38382.1| DNA primase [Leptospirillum sp. Group II '5-way CG']
Length = 717
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 57/244 (23%), Positives = 109/244 (44%), Gaps = 46/244 (18%)
Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549
+G+++ + ++ + + G GG+GKS L+ +++ G + + + ++NR A
Sbjct: 453 LGLSMTATTEYEKALLLVGKGGNGKSVLLRVLESLIGGKNRSSVQLKQ-LENRFQRA--- 508
Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP--- 606
L G + I+SE +E E+ A+IK + G+ +TA + P F P
Sbjct: 509 -----HLDGKLVNIMSELSEGGEVPDAEIKAIISGEPITA-----EHKQKHPFEFFPVCK 558
Query: 607 -FIVPNKHLFVRNPDDAWWRRYIVIPF-----DKPIANRDASFAQKLETKYTLEAKKWFL 660
+I N VR+ D +RR++++ F DKP +RD ++KL + +
Sbjct: 559 LWIATNHMPSVRDLSDGLFRRFVILNFPNRFDDKP--SRDTKLSEKLAAEAS-------- 608
Query: 661 KGVKAYISKGL-------DVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHS 713
G+ Y K L + P L+A + ++ +D +++D E + E S
Sbjct: 609 -GILNYCLKALSGVYERESLTEPTSSLEAVQGWKRDSDQTSQFLED-----EMILEPGAS 662
Query: 714 LAKS 717
+A S
Sbjct: 663 IASS 666
>gi|90962627|ref|YP_536543.1| DNA primase [Lactobacillus phage Sal3]
gi|90821821|gb|ABE00460.1| DNA primase [Lactobacillus phage Sal3]
Length = 464
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 88/383 (22%), Positives = 155/383 (40%), Gaps = 41/383 (10%)
Query: 405 TAQSLEAGSIFSITSDLLDSSSRF-LGEQDGILDLETGQKVKPTK-ELYI---------T 453
T + + +I S+ +D+ F + ++G+ + T K++P K E YI T
Sbjct: 107 TRKYIMNKAIIKQASETIDNVDPFKVHFKNGVYNFIT-DKLEPNKPENYIFHGRNYNLDT 165
Query: 454 KSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGG-NKAQRFIHIRGVGGS 512
+T TP + S+ E+ Y +G K Q F + GG+
Sbjct: 166 NNTPTPLTDNWLSESV----------EDAKQYIMEFIGYIFYRSYEKIQNFTILLAGGGN 215
Query: 513 GKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDE 572
GKST N + A G + N D+ N+ + RL + ++ ++
Sbjct: 216 GKSTFFNWLSDAVGIDNISNVSLQDLTDNQ------RRFTTSRLYQKNMNYYADISKGLI 269
Query: 573 INAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF 632
+ A +K +TG D + N G F N+ ++ + RR +++PF
Sbjct: 270 NDPALLKSITGDDALDVE-NKGKDQRTIKPFAKLFFGANELPPFKDTSKGFGRRPMIVPF 328
Query: 633 DKPIANRDASFAQKLETKYTLEAKKW-FLKGVKAYISKGLDVDIPEVCLKAKEEERQGTD 691
+ I + + F + +E K + A + LK K + +G + PE+ +K + E D
Sbjct: 329 E-AIEDFNERF-KMVEIKKEIPAFIYKCLKAFKKALERGYLSETPEM-IKLRNEWLGSND 385
Query: 692 TYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGI 751
+IDD C++ +N + L SY +Y L + +S + LK+
Sbjct: 386 IVGLFIDDYCELNKNYNIKKVYLYDSYKQYC---LENGYRAMSNQKFKQELKRFNVFDRY 442
Query: 752 KREKIEKEWKSKRIIKGLKLKPA 774
R K+ K RI +G+KLKP
Sbjct: 443 AR----KDGKMMRIFEGIKLKPT 461
>gi|118581963|ref|YP_903213.1| hypothetical protein Ppro_3564 [Pelobacter propionicus DSM 2379]
gi|118504673|gb|ABL01156.1| hypothetical protein Ppro_3564 [Pelobacter propionicus DSM 2379]
Length = 734
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/52 (46%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 226 HDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDE-ENFNYKWDTFDFEE 276
+D+W+ V MAV HET GS +G + RWS +GS Y + YKW +F F+E
Sbjct: 297 YDDWLHVGMAVFHETSGSDEGLALFDRWSSKGSKYKGIKEIEYKWRSFRFDE 348
>gi|167764655|ref|ZP_02436776.1| hypothetical protein BACSTE_03045 [Bacteroides stercoris ATCC
43183]
gi|167697324|gb|EDS13903.1| hypothetical protein BACSTE_03045 [Bacteroides stercoris ATCC
43183]
Length = 480
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/207 (21%), Positives = 87/207 (42%), Gaps = 25/207 (12%)
Query: 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRL---M 557
Q+ + + G GG GKS ++N+I A G V+ + L+ + M
Sbjct: 198 QKALLLYGHGGEGKSLIINIISAALGRDNVVERSVESLCAEESRTVADLENKLLNICYEM 257
Query: 558 GSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS---ESPASFTPFIVPNKHL 614
GS+ N + K++ + MTA+ Y + Y+ + F +P
Sbjct: 258 GSK------------FNISNFKRLVSKEPMTAKRLYMDPYTIYDYASLLFACNELPKNIE 305
Query: 615 FVRNPDDAWWRRYIVIPF--DKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLD 672
+ +A++RR +++PF P+ +D + +++ W +KG + +++G
Sbjct: 306 YT----NAYFRRLMILPFLNQIPVEKQDRTLGERVIQNELSGILNWIIKGAERLLAQGC- 360
Query: 673 VDIPEVCLKAKEEERQGTDTYQAWIDD 699
E+ +A E R D+ ++IDD
Sbjct: 361 FSKSELVDRALAEYRVDADSVASFIDD 387
>gi|168061752|ref|XP_001782850.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162665628|gb|EDQ52305.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 445
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 56/109 (51%), Gaps = 8/109 (7%)
Query: 483 MDYFTRCVGMALLGGNKAQRFIHI-RGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQN 541
M + + C L G A + I G G +GK+ +++L++ AFG+ Y + S +M
Sbjct: 1 MRFISSC-----LEGRNANKIFSIWSGSGDNGKTVMVSLVERAFGD-YAVKMPTSLLMGK 54
Query: 542 RPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR 590
R ++ A P + L G I ++ E +E D++N +K++ G D + R
Sbjct: 55 RV-QSLAATPEVAMLKGRLIALVEEPDEGDKLNLGVMKELKGNDSLYVR 102
>gi|282890934|ref|ZP_06299448.1| hypothetical protein pah_c032o008 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|281499149|gb|EFB41454.1| hypothetical protein pah_c032o008 [Parachlamydia acanthamoebae str.
Hall's coccus]
Length = 248
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 91/212 (42%), Gaps = 18/212 (8%)
Query: 565 SETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWW 624
+E E EI A +K + G+ TA + N + P S T + N R+ DA +
Sbjct: 38 AEIAEGAEIADAALKAIVSGERTTAEHKHKNPFDFHPYS-TCWFGANHMPHCRDFSDAIF 96
Query: 625 RRYIVIPFDKPI--ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKA 682
RR I++ F++ RD QKL+ + + L+G+ +G P A
Sbjct: 97 RRAIILSFNQKFEGPGRDVHLRQKLQMEIS-GILNLALEGIAGVFERGEFTYCPS-SEAA 154
Query: 683 KEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNL 742
K R D + ++ D C+I +L S + KSY+++ ++ KRI L
Sbjct: 155 KRNWRFECDQVEQFVTDACEIASSLRSSSLDIFKSYTDWAKE---MGVKRI--------L 203
Query: 743 KQKGFIGGIKREKIE--KEWKSKRIIKGLKLK 772
G +++ +E + KR++ G+ +K
Sbjct: 204 GHNGLTQRLQKLGVETSRGTNGKRMLSGISIK 235
>gi|300215227|gb|ADJ79643.1| DNA primase [Lactobacillus salivarius CECT 5713]
Length = 464
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 67/277 (24%), Positives = 116/277 (41%), Gaps = 18/277 (6%)
Query: 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMG 558
K Q F + GG+GKST N + A G + N D+ N+ + RL
Sbjct: 202 KIQNFTILLAGGGNGKSTFFNWLSDAVGIDNISNVSLQDLTDNQ------RRFTTSRLYQ 255
Query: 559 SRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRN 618
+ ++ ++ + A +K +TG D + N G F N+ ++
Sbjct: 256 KNMNYYADISKGLINDPALLKSITGDDALDVE-NKGKDQRTIKPFAKLFFGANELPPFKD 314
Query: 619 PDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKW-FLKGVKAYISKGLDVDIPE 677
+ RR +++PF+ I + + F + +E K + A + LK K + +G + PE
Sbjct: 315 TSKGFGRRPMIVPFE-AIEDFNERF-KMVEIKKEIPAFIYKCLKAFKKALERGYLSETPE 372
Query: 678 VCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRT 737
+ +K + E D +IDD C++ +N + L SY +Y L + +S +
Sbjct: 373 M-IKLRNEWLGSNDIVGLFIDDYCELNKNYNIKKVYLYDSYKQYC---LENGYRAMSNQK 428
Query: 738 VTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPA 774
LK+ R K+ K RI +G+KLKP
Sbjct: 429 FKQELKRFNVFDRYAR----KDGKMMRIFEGIKLKPT 461
>gi|94266128|ref|ZP_01289842.1| Phage/plasmid primase P4-like [delta proteobacterium MLMS-1]
gi|93453303|gb|EAT03746.1| Phage/plasmid primase P4-like [delta proteobacterium MLMS-1]
Length = 925
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 77/175 (44%), Gaps = 22/175 (12%)
Query: 556 LMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR-LNYGNTYSESPASFT----PFIVP 610
L G+R+ ++ E E+ I AA K +TGGD +T R N+ P SFT +
Sbjct: 707 LAGARLNVVGELPESKPIPAAAFKTVTGGDVLTGRHPNF------RPISFTNEAAHLFMS 760
Query: 611 NKHLFVRNPDDAWWRRYIVIPFDK-------PIANRDASFAQKLETKYTLEAKKWFLKGV 663
N + + +A++ R++++ F PI D A+++ W +KG
Sbjct: 761 NHFITTSDHSEAFFTRWLLVEFPNSRLKSGLPI---DPDLAERIIADELPGIAHWSMKGA 817
Query: 664 KAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSY 718
+ +++G V + R+ T++ + +I D C++ + E L K Y
Sbjct: 818 RRLLAQG-KFSGSTVHDRLMASWRRTTNSLEEFIHDVCELAPDAHERRSELYKGY 871
>gi|307317147|ref|ZP_07596588.1| Primase 2 [Sinorhizobium meliloti AK83]
gi|306897235|gb|EFN27980.1| Primase 2 [Sinorhizobium meliloti AK83]
Length = 806
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/293 (21%), Positives = 111/293 (37%), Gaps = 41/293 (13%)
Query: 8 EQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACG------FGFVCGVG 61
+Q ++ GF + L KRP + +L+ E++ K G G +G
Sbjct: 3 DQIERLARAGFAIHWLHPKQKRPIGENWSTKPVLTLEQLKKTYKDGNNVGVRLGKWSKIG 62
Query: 62 EQPLYAFDIDSKDEKTANTFK----DTFEILHGTPIVRIGQ------------KPKILIP 105
L+ D+D +D K A+ + + F + P V G KP
Sbjct: 63 NDYLHVIDLDIRDPKLADEARQKLTELFPVWKTYPTVISGSGGESRHFYILSDKPFSPKK 122
Query: 106 FRMNKEGIKKKKTTESTQGHLDILGCG-QYFVAYNIHPKTKKEYTWTTPPHRFKVEDT-- 162
++E I+ + +D+ G G Q + +IHP T K Y W TP F +D
Sbjct: 123 LAHSREKIQTADGKWHWRWEIDLFGTGKQVAMPPSIHPDTGKPYRWQTP---FDFDDLDL 179
Query: 163 ---PLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGE 219
P++ + + + + ++S + EI L
Sbjct: 180 GLGPMVGSDVLAKMLDMDADDERAAADPERS----------KPLGLSLDEIREVLDDLPR 229
Query: 220 EFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTF 272
+++ D W+ V M++HHET GS G ++ +SK +D+ + W +F
Sbjct: 230 DYWRDDRDGWLTVGMSLHHETGGSDHGYKLWLDFSKDSEKFDKSDQKRVWKSF 282
>gi|71911262|ref|YP_282812.1| DNA primase [Streptococcus pyogenes MGAS5005]
gi|94989081|ref|YP_597182.1| DNA primase [Streptococcus pyogenes MGAS9429]
gi|94992972|ref|YP_601071.1| DNA primase [Streptococcus pyogenes MGAS2096]
gi|71854044|gb|AAZ52067.1| DNA primase [Streptococcus pyogenes MGAS5005]
gi|94542589|gb|ABF32638.1| DNA primase [Streptococcus pyogenes MGAS9429]
gi|94546480|gb|ABF36527.1| DNA primase [Streptococcus pyogenes MGAS2096]
Length = 794
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 65/281 (23%), Positives = 116/281 (41%), Gaps = 45/281 (16%)
Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540
E +D+ G Q+ + I G GG+GKSTL+N+++ G +MQ
Sbjct: 516 ENIDFIFEWFGYNFYREYTIQKMLFIYGSGGTGKSTLINILREMIGADNYSAVTLQYLMQ 575
Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTA-RLNYG--NTY 597
R + G L R + ++ + A +K +TG D + A R N N Y
Sbjct: 576 ERFAKIG-----LYRKTAN---FDTDAKPQYLADGAALKMLTGEDTIHADRKNKEPINFY 627
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKK 657
+ + SF +P +R+ RR +++ DK + Q+++ KY L+
Sbjct: 628 NYAKLSFAMNELPP----MRDFSGGLKRRMMILEMDKVL-------TQEVKAKYPLDKIM 676
Query: 658 WFLKGVKAYISKGL-------DVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENL--- 707
+ G+ +GL D I + E+ +G D +++D C++GE+
Sbjct: 677 SEVPGIFNRAMEGLRKALSKRDFSISASMRSSVEKWEKGNDVVAMFLEDECELGEDFKVP 736
Query: 708 -----------WEES--HSLAKSYSEYREQELNYDRKRIST 735
++S LAK+ +R +ELNY+ K + +
Sbjct: 737 VRDVYPAYKFYCQDSGYKPLAKNAFNHRLRELNYENKNVKS 777
>gi|27383370|ref|NP_774899.1| hypothetical protein bll8259 [Bradyrhizobium japonicum USDA 110]
gi|27356545|dbj|BAC53524.1| bll8259 [Bradyrhizobium japonicum USDA 110]
Length = 223
Score = 49.7 bits (117), Expect = 0.002, Method: Composition-based stats.
Identities = 37/153 (24%), Positives = 65/153 (42%), Gaps = 15/153 (9%)
Query: 33 LGKWEEQLLSSEKIDKLP-----ACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEI 87
+G W+ S+ +++ + A G +CG L D+D+ D +TA+ +
Sbjct: 32 MGNWQRSRWSAAQMEGIARNYPDATNTGLLCG----ELVGLDVDTPDAETADAIRAMVME 87
Query: 88 LHGTPIV--RIGQKPKILIPFRMNKEGIKKKKTTESTQG---HLDILGCGQYFVAYNIHP 142
L G+ R+G+ PK L FR + K+ G ++ G FVA+ HP
Sbjct: 88 LPGSDRAPYRMGKAPKTLFAFRATEPREKRATGAYLINGAKCQVEAFGERTQFVAFGTHP 147
Query: 143 KTKKEYTW-TTPPHRFKVEDTPLLSEEDVEYLF 174
T + Y W P + + P ++ E ++ L
Sbjct: 148 DTGRPYEWFNGSPAETPLAELPEITPEAIDELL 180
>gi|320197682|gb|EFW72293.1| DNA primase, phage-associated / Replicative helicase RepA
[Escherichia coli WV_060327]
Length = 583
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/177 (26%), Positives = 82/177 (46%), Gaps = 18/177 (10%)
Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTG---TPFVEGEPSQEFLDLV 473
I + + + S L +G+L+L+TG+ + E + T G TP V GE ++
Sbjct: 217 IAAPMGEPSGDLLPFTNGVLNLKTGEFSPHSPEHWSTTHNGIEYTPPVAGENIRDNAPNF 276
Query: 474 SGYFESEEVMD---YFTRCVGMALLGGNKA--QRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528
+ E D C + ++ N+ Q FI G GGSGKST ++ G Q
Sbjct: 277 HKWLEHAAGKDPRKMMRICAALYMIMANRYDWQMFIEATGDGGSGKSTFTHIATLLAGKQ 336
Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGD 585
++AE M + G+A +++GSR++++++ + IK++TGGD
Sbjct: 337 NTVSAE----MTSLDDAGGRA-----QVVGSRLIVLADQPKYTG-EGTGIKKITGGD 383
>gi|300719024|ref|YP_003743827.1| phage/plasmid primase, P4 family [Erwinia billingiae Eb661]
gi|299064860|emb|CAX61980.1| Phage/plasmid primase, P4 family [Erwinia billingiae Eb661]
Length = 776
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 57/249 (22%), Positives = 106/249 (42%), Gaps = 29/249 (11%)
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTG----TPFVEGEPSQ-------EFLD 471
+ + R +G ++G+LD T P ++ Y ++ TP V GE + ++LD
Sbjct: 407 EPARRLIGFRNGVLDTRTA-TFSPHRKDYWLRTVSDVDFTPPVPGETLESHAPHFWQWLD 465
Query: 472 LVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVI 531
+G S E D + M L Q F+ + G GGSGKS + ++ G
Sbjct: 466 RAAG--RSAEKRDIILAALFMVLANRFDWQLFLEVTGPGGSGKSIMADIATMLAGTDNTT 523
Query: 532 NAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARL 591
+A + +R A ++G ++I+ + E + A IK +TGGD ++
Sbjct: 524 SATIETLESSRERAA---------VIGYSLIILPD-QEKWSGDGAGIKAITGGDAVSVDP 573
Query: 592 NYGNTYSES-PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLE 648
Y + YS PA V N + + RR +++ F + + + RD +K+
Sbjct: 574 KYRDAYSTHIPAVI--LAVNNNPMRFTDRSGGVSRRRVILHFPEIVSASERDPQLKEKIR 631
Query: 649 TKYTLEAKK 657
+ ++ ++
Sbjct: 632 GELSVIVRQ 640
>gi|150396564|ref|YP_001327031.1| hypothetical protein Smed_1346 [Sinorhizobium medicae WSM419]
gi|150028079|gb|ABR60196.1| hypothetical protein Smed_1346 [Sinorhizobium medicae WSM419]
Length = 793
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/123 (29%), Positives = 54/123 (43%), Gaps = 8/123 (6%)
Query: 59 GVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIV--RIGQKPKILIPFRMNKEGIKKK 116
GV + A D+D+ D A+ + G R+G+ PK L F+ E +K
Sbjct: 63 GVLTGDIVAVDVDAPDAAIADQLIARLMAIPGAKRAPYRVGKAPKCLFIFKAT-EPRRKA 121
Query: 117 KTTESTQG----HLDILGCGQYFVAYNIHPKTKKEYTWTT-PPHRFKVEDTPLLSEEDVE 171
T E G ++ILG GQ FVAY H +T Y W+ P + D P ++ + V+
Sbjct: 122 STGEYLIGGSKCQVEILGQGQQFVAYGNHAETGLPYVWSNGEPLSIPLHDLPEITPDAVD 181
Query: 172 YLF 174
Sbjct: 182 AFL 184
>gi|139473887|ref|YP_001128603.1| phage DNA primase/helicase protein [Streptococcus pyogenes str.
Manfredo]
gi|209559299|ref|YP_002285771.1| Putative DNA primase/helicase-phage associated [Streptococcus phage
NZ131.2]
gi|134272134|emb|CAM30379.1| putative phage DNA primase/helicase protein [Streptococcus pyogenes
str. Manfredo]
gi|209540500|gb|ACI61076.1| Putative DNA primase/helicase-phage associated [Streptococcus phage
NZ131.2]
Length = 794
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 65/281 (23%), Positives = 116/281 (41%), Gaps = 45/281 (16%)
Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540
E +D+ G Q+ + I G GG+GKSTL+N+++ G +MQ
Sbjct: 516 ENIDFIFEWFGYNFYREYAIQKMLFIYGSGGTGKSTLINILREMIGADNYSAVTLQYLMQ 575
Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTA-RLNYG--NTY 597
R + G L R + ++ + A +K +TG D + A R N N Y
Sbjct: 576 ERFAKIG-----LYRKTAN---FDTDAKPQYLADGATLKMLTGEDTIHADRKNKEPINFY 627
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKK 657
+ + SF +P +R+ RR +++ DK + Q+++ KY L+
Sbjct: 628 NYAKLSFAMNELPP----MRDFSGGLKRRMMILEMDKVL-------TQEVKAKYPLDKIM 676
Query: 658 WFLKGVKAYISKGL-------DVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENL--- 707
+ G+ +GL D I + E+ +G D +++D C++GE+
Sbjct: 677 GEVPGIFNRAMEGLRKALSKRDFSISASMGSSVEKWEKGNDVVAMFLEDECELGEDFKVP 736
Query: 708 -----------WEES--HSLAKSYSEYREQELNYDRKRIST 735
++S LAK+ +R +ELNY+ K + +
Sbjct: 737 VRDVYPAYKFYCQDSGYKPLAKNAFNHRLRELNYENKNVKS 777
>gi|15921192|ref|NP_376861.1| hypothetical protein ST0954 [Sulfolobus tokodaii str. 7]
gi|15621977|dbj|BAB65970.1| 902aa long conserved hypothetical protein [Sulfolobus tokodaii str.
7]
Length = 902
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 74/161 (45%), Gaps = 21/161 (13%)
Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM--QNRPPEAG 547
+G L K ++ + G GG+GKST +NLIK G+ Y ++ ++ QNR AG
Sbjct: 548 IGYTLYPEIKFRKAFMVIGSGGNGKSTYINLIKKILGD-YAVSISPRELFDPQNRFI-AG 605
Query: 548 KANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP- 606
L ++E+ + + K++TGGD +TA + + + P +F
Sbjct: 606 NLYHKLAN-------AVAESKNYTIEDMDRFKRLTGGDWITADVKF-----KDPITFKNI 653
Query: 607 ---FIVPNKHLFVRNPDD-AWWRRYIVIPFDKPIANRDASF 643
I N VR+ DD A+W R++++ F + D F
Sbjct: 654 AKLIIASNNMPAVRDTDDKAFWHRWVLVEFPHEFKDNDTWF 694
>gi|242279615|ref|YP_002991744.1| P4 family phage/plasmid primase [Desulfovibrio salexigens DSM 2638]
gi|242122509|gb|ACS80205.1| phage/plasmid primase, P4 family [Desulfovibrio salexigens DSM
2638]
Length = 788
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 75/351 (21%), Positives = 145/351 (41%), Gaps = 53/351 (15%)
Query: 432 QDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE-----FLDLVSGYFESEEVMDYF 486
Q+G+L+L+T ++KP + Y ST V +P E + + ++ E +
Sbjct: 454 QNGMLNLKT-LELKPHEHDYF--STICLNVSFDPDSEARCERWEKFLQQTVQTPEPIAQL 510
Query: 487 TRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI-MQNRPPE 545
G+ L + ++ + + G G GKSTL+ +++ + V A S + Q+ +
Sbjct: 511 QEFAGLCLTRDTRFEKCLLLLGPGSDGKSTLLKVLR-----ELVCAANCSAVAFQDLEDQ 565
Query: 546 AGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFT 605
+A+ + ++++ IS + + K + GD + + +++ FT
Sbjct: 566 FRRAS------LYNKLLNISTEIGSAAMETPIFKAVVSGDAIQGAFKHKDSFE-----FT 614
Query: 606 PFI----VPNKHLFVRNPDDAWWRRYIVIPFDKPI----ANRDASFAQKLETKYTLEAKK 657
PF NK V + D ++RR + I F K +R+ ++L E
Sbjct: 615 PFCKLAFAANKLPRVLDNTDGFFRRMLPIEFKKQFLEDDPDRNPHLFEELIEHELSEIFH 674
Query: 658 WFLKGVKAYISKGLDVDIPEVCLKAKE---EERQGTDTYQAWIDDCCDIGENLWEESHSL 714
W L G+ +G C + +E + R+ + QA+++D C++ + + SL
Sbjct: 675 WALVGLHRLYEQGKFTS----CDETRELLMDYRRLNNPVQAFVEDKCELEDGAKQSKDSL 730
Query: 715 AKSYSEYREQ-------------ELNYDRKRISTRTVTLNLKQKGFIGGIK 752
KSY EY + EL K + ++N K+ + GIK
Sbjct: 731 YKSYREYSSENGYQAMHKENFFRELYAAVKTLKETRPSINGKRCRMVAGIK 781
>gi|295104245|emb|CBL01789.1| phage/plasmid primase, P4 family, C-terminal domain
[Faecalibacterium prausnitzii SL3/3]
Length = 568
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 76/316 (24%), Positives = 130/316 (41%), Gaps = 54/316 (17%)
Query: 432 QDGILDLETGQKVKPTKELYIT----KSTGTPFVEGEPSQEFLDLVSG--YFESEEVMDY 485
++GILDL K+ P IT K+ P + + +E+L V+G SE V
Sbjct: 231 ENGILDL-MEWKLYPHSPDQITFTCIKAKYDPQAKCQIFEEYLQRVTGGDSLLSERVW-- 287
Query: 486 FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545
+G L+ + + FI ++G+G SGKS L + I+ + + + + M+N
Sbjct: 288 --MAIGYLLIYPARGKFFIFMKGIGNSGKSVLGSFIRRLYPKESISSIRLKQ-MKNEFGM 344
Query: 546 AGKANPSL---IRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY-GNTYSESP 601
+ AN + + + S+I DE A+++KQ+TGGD + + + E
Sbjct: 345 SSLANAVINFDMDMPSSKI---------DEEAASRLKQITGGDSINVPRKFRDDALLERR 395
Query: 602 ASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--------------RDASFAQKL 647
F N + + DDA +R I +PF+ I + RDA + L
Sbjct: 396 IKFV--FSSNHPIIIDGEDDALLKRIIYLPFNYAIPDDQQDPDLGDKIWKERDAIATKAL 453
Query: 648 ETKYTLEAKKWFLKG----------VKAYISKGLDVDIPEVCLKAKEEERQGT-DTYQAW 696
L + V+ I+K + + E C K++ + T D Y A+
Sbjct: 454 RYARKLVKLNYIFPEIPQMDNAKCIVRDSIAKTVGKFVQESCDKSESKAVTATEDLYNAY 513
Query: 697 IDDCCDIGENLWEESH 712
D C + +N+W S
Sbjct: 514 SDYCKE--KNMWACSQ 527
>gi|161505697|ref|YP_001572809.1| hypothetical protein SARI_03873 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|160867044|gb|ABX23667.1| hypothetical protein SARI_03873 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 777
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 64/251 (25%), Positives = 99/251 (39%), Gaps = 29/251 (11%)
Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTG----TPFVEGEPSQ-------EFLDLV 473
+ R +G ++G+LD TG P + + ++ TP VEGE + +LD
Sbjct: 410 ARRLIGFRNGVLDTATG-TFSPHHKAHWLRTLCDVDFTPPVEGETLETHAPDFWRWLDRA 468
Query: 474 SGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
+G +E D + M L Q F+ + G GGSGKS L + G +A
Sbjct: 469 AG--GRQEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNATSA 526
Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593
+ R A SLIRL E + A +K +TGGD ++ Y
Sbjct: 527 TIETLESPR-ERAALIGFSLIRL---------PDQEKWSGDGAGLKAITGGDAVSVDPKY 576
Query: 594 GNTYSES-PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETK 650
+ YS PA V N + + RR ++I F + IA RD K+ +
Sbjct: 577 KDAYSTHIPAVI--LAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPEERDPQLKNKIARE 634
Query: 651 YTLEAKKWFLK 661
+ ++ K
Sbjct: 635 LAVIVRQLMQK 645
>gi|71900788|ref|ZP_00682908.1| Poxvirus D5 protein [Xylella fastidiosa Ann-1]
gi|71729465|gb|EAO31576.1| Poxvirus D5 protein [Xylella fastidiosa Ann-1]
Length = 258
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 70/160 (43%), Gaps = 14/160 (8%)
Query: 556 LMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLF 615
L G R++ ++ET+E + +KQ TGGD + AR + + P + +K +
Sbjct: 25 LAGRRMMTVNETSEGGILREGFVKQATGGDSLKARHMRSDFFEFRPTHKLQLLTNHKPV- 83
Query: 616 VRNPDDAWWRRYIVIPFDKPIANR---DASFAQ-----KLETKYTLEAK---KWFLKGVK 664
++ D W R ++IPF +A AQ K+ K E + W + G
Sbjct: 84 IKGQDVGIWSRLMLIPFKARFGTAEEIEAGIAQYPIDHKITEKLAAEREGVLAWVVAGAV 143
Query: 665 AYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIG 704
+ GL+ PE+ A ++ + D +I++ C +G
Sbjct: 144 EWCKNGLNP--PEIVRNASKDYQTEQDRIAQFIEEECVLG 181
>gi|168009191|ref|XP_001757289.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691412|gb|EDQ77774.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 384
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 56/241 (23%), Positives = 85/241 (35%), Gaps = 75/241 (31%)
Query: 420 DLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFV----EGEPSQEFLDLVSG 475
+LLDS +G + G+ D + + + YIT ST PF+ E + E LDL++
Sbjct: 58 ELLDSRRDVIGMKGGVYDFTKDKFRRMEPDDYITLSTRIPFIPLDYNSEVTNEVLDLLAK 117
Query: 476 YFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535
F +E++ YF RFI
Sbjct: 118 VFPNEDIRRYFI--------------RFI------------------------------- 132
Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595
+ P L L G I + E +E D++N +K++TG D + R
Sbjct: 133 -----------SSSTPELAMLKGRLIAFVQEPDEGDKLNLGVMKELTGNDSLYIR----G 177
Query: 596 TYSESPASF--TPFI-----VPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLE 648
Y E T F+ +P +F D A W R V+PF ++ S L
Sbjct: 178 LYEEGTIILQTTKFVLIANRIPQMSMF----DKAVWSRVRVMPFVSMFVDKIESSHDSLT 233
Query: 649 T 649
T
Sbjct: 234 T 234
>gi|320177604|gb|EFW52594.1| DNA primase , phage-associated [Shigella boydii ATCC 9905]
Length = 777
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 96/238 (40%), Gaps = 27/238 (11%)
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYI---TKSTGTPFVEGEPSQ-------EFLDL 472
+ S +G ++G+LD TG KE ++ + TP V+GE + +LD
Sbjct: 408 NPSRHLIGFRNGVLDTRTGLFSPHCKENWLRTLCEVDFTPPVKGETLETHAPAFWRWLDR 467
Query: 473 VSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532
+G+ ++ D + M L Q F+ + G GGSGKS L + G+ +
Sbjct: 468 AAGHKPAKR--DIILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATMLAGDDNATS 525
Query: 533 AEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLN 592
A + R A SLIRL E + A +K +TGGD ++
Sbjct: 526 ATIETLESPR-ERAALIGFSLIRL---------PDQEKWSGDGAGLKAITGGDAVSVDPK 575
Query: 593 YGNTYSES-PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKL 647
Y N YS PA V N + + RR +++ F + IA RD K+
Sbjct: 576 YQNAYSTHIPAVI--LAVNNNPMRFTDRSGGVSRRRVILHFPEQIAPEERDPQLKDKI 631
>gi|320166803|gb|EFW43702.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 763
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 61/131 (46%), Gaps = 16/131 (12%)
Query: 412 GSIFSITSDLLDSSSRFLGEQD---------GILDLETGQKVKPTKELYITKSTGTPFVE 462
G I + S LLD+S + ++D +L+L TG + +E Y T + +
Sbjct: 553 GIIVKLKSKLLDASFKAKLDKDPYSLAIAGNKMLNLLTGVTRQRVREDYCTFALDVDYTP 612
Query: 463 GEP---SQEFL-DLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLM 518
G +Q F D++ G E+++YF R +G LLG N A G G +GKS ++
Sbjct: 613 GSDLSIAQSFFSDVMCG---DAEMIEYFQRVMGYCLLGNNAAHLMFFFLGRGSNGKSLIL 669
Query: 519 NLIKYAFGNQY 529
+++ Q+
Sbjct: 670 QILEAILKGQF 680
>gi|168705299|ref|ZP_02737576.1| Phage/plasmid primase P4-like protein [Gemmata obscuriglobus UQM
2246]
Length = 981
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 67/318 (21%), Positives = 127/318 (39%), Gaps = 41/318 (12%)
Query: 428 FLGEQDGILDLE----TGQK-VKPTKELYITKSTGT----PFVEGEPSQEFLDLVS-GYF 477
F+ +G++D+ TG+ + P LY T + P E FLD V+ G
Sbjct: 538 FVACANGLIDVAELFATGRATLHPATPLYFTPAAIPVAFDPAAECPTFLRFLDRVTEGDA 597
Query: 478 ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
E + ++ G L + Q+F + G G +GKST + ++ G+ + +
Sbjct: 598 ERQSLLQEI---AGYLLRFDTRFQQFFLLTGDGANGKSTFLAALRALIGDHNYASVPLEE 654
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
+ +L +G + ++E E D++ AK+K GGD MT +
Sbjct: 655 FGERF---------TLGATLGKLVNAVAEVGELDKVAEAKLKSFVGGDLMTF-----DRK 700
Query: 598 SESPASFTP----FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTL 653
+++P S P + N + + WRRY ++PF I+ + E ++ +
Sbjct: 701 NKAPVSARPTARLLLSTNTPPRFADRTEGVWRRYQLVPFTAVISAEERVRGMS-EPEWWV 759
Query: 654 EAKK------WFLKG-VKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGEN 706
+ + W L G ++ + + G C AK E R+ + ++ ++ + E
Sbjct: 760 SSGELPGVLNWALAGLLRLHRANGFTSSA--ACEAAKAEHRELCNPHRLFLGEHVRAQEG 817
Query: 707 LWEESHSLAKSYSEYREQ 724
L +Y E+ Q
Sbjct: 818 AALRCVELFAAYVEWCRQ 835
>gi|187935270|ref|YP_001884288.1| hypothetical protein CLL_A0034 [Clostridium botulinum B str. Eklund
17B]
gi|187723423|gb|ACD24644.1| hypothetical protein CLL_A0034 [Clostridium botulinum B str. Eklund
17B]
Length = 586
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 86/214 (40%), Gaps = 6/214 (2%)
Query: 435 ILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFL-DLVSGY--FESEEVMDYFTRCVG 491
I+DL G+ K + I ++ ++ + S +F+ D + Y E +++ +
Sbjct: 237 IIDLNKGEIKKSCRNDLILNTSKYNLMDKKDSIKFVKDKLKLYKKVLGNERLEFILDLIS 296
Query: 492 MALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANP 551
+LG N Q I + G G +GKST N++K F V +++ + +
Sbjct: 297 YKMLGKN-LQLAIFMIGAGATGKSTFKNIVKDLFEENAVNIPYTYFTTKHKGNDDVSRDD 355
Query: 552 SLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPN 611
L+ L + SE + D IN AK K + AR G I N
Sbjct: 356 LLVSLDNKSFGLSSEGDTTDIINQAKFKNILSNSSEKARATRGKLIDVDLQKLDLLIDTN 415
Query: 612 KHLFVRNPDDAWWRRYIVIPFDK--PIANRDASF 643
N DDA RR + I F PI +R+ +F
Sbjct: 416 DIPQFTNYDDAVNRRLLFIKFINKIPIESRNTNF 449
>gi|323946009|gb|EGB42047.1| poxvirus D5 protein [Escherichia coli H120]
Length = 774
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 95/238 (39%), Gaps = 27/238 (11%)
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYI---TKSTGTPFVEGEPSQ-------EFLDL 472
+ S +G ++G+LD TG KE ++ + TP V+GE + +LD
Sbjct: 405 NPSRHLIGFRNGVLDTRTGLFSPHCKENWLRTLCEVDFTPPVKGETLETHAPAFWRWLDR 464
Query: 473 VSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532
+G+ ++ D + M L Q F+ + G GGSGKS L + G +
Sbjct: 465 AAGHKPAKR--DIILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNATS 522
Query: 533 AEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLN 592
A + R A SLIRL E + A +K +TGGD ++
Sbjct: 523 ATIETLESPR-ERAALIGFSLIRL---------PDQEKWSGDGAGLKAITGGDAVSVDPK 572
Query: 593 YGNTYSES-PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKL 647
Y N YS PA V N + + RR +++ F + IA RD K+
Sbjct: 573 YQNAYSTHIPAVI--LAVNNNPMRFTDRSGGVSRRRVILHFPEQIAPEERDPQLKDKI 628
>gi|15789518|ref|NP_279342.1| hypothetical protein VNG0215C [Halobacterium sp. NRC-1]
gi|10579860|gb|AAG18822.1| conserved hypothetical protein [Halobacterium sp. NRC-1]
Length = 857
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 58/291 (19%), Positives = 120/291 (41%), Gaps = 39/291 (13%)
Query: 429 LGEQDGILDLETGQ---KVKPTKELYITKSTG-TPFVEGEPSQEFLDLVSGYFESEEVMD 484
+ Q+G++DL+ G+ +++P+ + T +T P + +EFL V + + +
Sbjct: 496 IAAQNGLIDLDAGEIMREIQPSDHIRWTLATEYDPEADCRKWREFLGEVVEASDIPLLQE 555
Query: 485 YFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544
Y C+ + K ++ + + G +GKS +++I+ FG + ++ +
Sbjct: 556 YIGYCLRHWDV---KRKKALMLLGPTDAGKSVFVDVIEALFGGEDSAATSSTSVQYLANE 612
Query: 545 EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604
G A RL+ + + S+ + N K+K++ GD + A + P +
Sbjct: 613 RWGPA-----RLVNTALNTRSDLGKGSIENTGKVKELIAGDSLDAERKRKPVFQFKPTA- 666
Query: 605 TPFIVPNKHLFVRN-------PDDAWWRRYI------VIPFDKPIANRDASFAQKLETKY 651
KH+F N D+A+W R++ IP + + + D ++L +
Sbjct: 667 -------KHIFAANRAPNRSVDDEAFWNRWLTVVFPQAIPRSEQVDDLDEQLLEELPGIF 719
Query: 652 TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCD 702
W ++G + +G + P ++ ER G Q W D C +
Sbjct: 720 N-----WAIEGYQRLEEQGHFTNQPLPYQNREKWERYGNSIAQ-WFDRCTE 764
>gi|284037975|ref|YP_003387905.1| P4 family phage/plasmid primase [Spirosoma linguale DSM 74]
gi|283817268|gb|ADB39106.1| phage/plasmid primase, P4 family [Spirosoma linguale DSM 74]
Length = 486
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 86/203 (42%), Gaps = 31/203 (15%)
Query: 508 GVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISET 567
G G +GKS +I G D + + ++ P+ R + ++ +
Sbjct: 238 GSGANGKSVFFEIITALLG---------PDNVSHYSLQSLTNEPAYCRANLATKLLNYAS 288
Query: 568 NENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRN----PDD-- 621
N ++ A+ KQM G+ + ARL YG PFI+ + N P D
Sbjct: 289 EINGKLEASTFKQMVSGEPIEARLPYGQ----------PFIMSKYAKLIFNCNELPADVE 338
Query: 622 ---AWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIP 676
A++RR++++PF+ I+ +D A K+ W L G+ + + D
Sbjct: 339 HTPAYFRRFLILPFNVTISEEEQDKELAAKIIRSELSGVFNWVLDGLHRLLEQKRFTDCE 398
Query: 677 EVCLKAKEEERQGTDTYQAWIDD 699
V + ++ +RQ +DT + ++D+
Sbjct: 399 AVKQQIEDYKRQ-SDTVRLFLDE 420
>gi|255263132|ref|ZP_05342474.1| conserved hypothetical protein [Thalassiobium sp. R2A62]
gi|255105467|gb|EET48141.1| conserved hypothetical protein [Thalassiobium sp. R2A62]
Length = 295
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 66/293 (22%), Positives = 123/293 (41%), Gaps = 30/293 (10%)
Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVIN---AEASDIMQNRPPEA 546
+G L+ + + F+ + G G +GKS + +++ G + V A SD Q
Sbjct: 27 MGYTLMSHARHELFVMLIGPGANGKSVFLAILEGLVGEKNVAGVQPANFSDKFQRAHLHK 86
Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
AN I++E + + I A++K +T G+ T + + + P S T
Sbjct: 87 KLAN------------IVTELKQGEMIADAELKGITSGEPSTVEHKHRDPFVLRPFS-TC 133
Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
+ N R+ DA +RR +++ F++ + L+ K E + AY
Sbjct: 134 WFGTNYMPRTRDFSDALFRRAVILQFNRTFTKEEQD--PLLKDKLLTELPGILNLALDAY 191
Query: 667 ISKGLDV-DIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQE 725
S + P AK+E R D ++DD C + ++ + ++Y + +
Sbjct: 192 DSALVSAFTQPGSTETAKQEWRLEADQVAQFVDDVCKRDPDACSKASKVFEAYLNWAQG- 250
Query: 726 LNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESV 778
N ++ +S R + L + GF G +R+ K+ R + GL++ PA SV
Sbjct: 251 -NGIKQTMSQRGLRDRLTRLGF--GHRRD------KTARYVTGLRV-PARVSV 293
>gi|300957418|ref|ZP_07169632.1| nucleoside triphosphatase, D5 family [Escherichia coli MS 175-1]
gi|300315853|gb|EFJ65637.1| nucleoside triphosphatase, D5 family [Escherichia coli MS 175-1]
Length = 774
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 95/238 (39%), Gaps = 27/238 (11%)
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYI---TKSTGTPFVEGEPSQ-------EFLDL 472
+ S +G ++G+LD TG KE ++ + TP V+GE + +LD
Sbjct: 405 NPSRHLIGFRNGVLDTRTGLFSPHCKENWLRTLCEVDFTPPVKGETLETHAPAFWRWLDR 464
Query: 473 VSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532
+G+ ++ D + M L Q F+ + G GGSGKS L + G +
Sbjct: 465 AAGHKPAKR--DIILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNATS 522
Query: 533 AEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLN 592
A + R A SLIRL E + A +K +TGGD ++
Sbjct: 523 ATIETLESPR-ERAALIGFSLIRL---------PDQEKWSGDGAGLKAITGGDAVSVDPK 572
Query: 593 YGNTYSES-PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKL 647
Y N YS PA V N + + RR +++ F + IA RD K+
Sbjct: 573 YQNAYSTHIPAVI--LAVNNNPMRFTDRSGGVSRRRVILHFPEQIAPEERDPQLKDKI 628
>gi|306826829|ref|ZP_07460130.1| virulence-associated protein E [Streptococcus pyogenes ATCC 10782]
gi|304430992|gb|EFM34000.1| virulence-associated protein E [Streptococcus pyogenes ATCC 10782]
Length = 794
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 72/309 (23%), Positives = 124/309 (40%), Gaps = 44/309 (14%)
Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540
E +D+ G Q+ + I G GG+GKSTL+N+++ G +MQ
Sbjct: 516 ENIDFIFEWFGYNFYREYTIQKMLFIYGSGGTGKSTLINILREMIGADNYSAVTLQYLMQ 575
Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTA-RLNYG--NTY 597
R + G L R + ++ + A +K +TG D + A R N N Y
Sbjct: 576 ERFAKIG-----LYRKTAN---FDTDAKPQYLADGATLKMLTGEDTIHADRKNKEPINFY 627
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKK 657
+ + SF +P +R+ RR +++ DK + Q+++ KY L+
Sbjct: 628 NYAKLSFAMNELPP----MRDFSGGLKRRMMILEMDKVL-------TQEVKAKYPLDKIM 676
Query: 658 WFLKGVKAYISKGL-------DVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEE 710
+ G+ +GL D I + + E+ +G D +++D C++GE+
Sbjct: 677 GEVPGIFNRAMEGLRKALSKRDFSISDSMRSSVEKWEKGNDVVAMFLEDECELGEDFKVP 736
Query: 711 SHSLAKSYSEYREQELNYD---RKRISTRTVTLNLKQKGF-IGGIKREKIEKEWKSKRII 766
+ +Y Y Q+ Y R + R LN + K +GG K+ R
Sbjct: 737 VRDVYPAYKFYC-QDSGYKPLARNSFTQRMNELNFENKNAKMGG----------KTVRCW 785
Query: 767 KGLKLKPAF 775
G +LK F
Sbjct: 786 IGFRLKGEF 794
>gi|289167298|ref|YP_003445565.1| hypothetical protein smi_0425 [Streptococcus mitis B6]
gi|288906863|emb|CBJ21697.1| conserved hypothetical protein [Streptococcus mitis B6]
Length = 534
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 68/323 (21%), Positives = 135/323 (41%), Gaps = 53/323 (16%)
Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGT--------PFVEG-EPSQEFLDLVSGYF 477
RF+ ++GI D + T E + GT P ++G + LDL+SG
Sbjct: 174 RFILVKNGIYDKKEKLLRPFTHEFVAFSTIGTEYDHFAKSPVIDGWDIDSWLLDLMSG-- 231
Query: 478 ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
EE+++ + + +L G ++ I G G GK T+ LI G + V + + +
Sbjct: 232 -DEELVELIWQVISASLNGNYSYRKSIWFVGEGNDGKGTVQQLITNLVGMRNVASLKLNQ 290
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISE-------TNENDEINAAKIKQMTGGDCMTAR 590
+ + ++ + VII + +E+ N+ +TG +
Sbjct: 291 FSERFA----------LSMIEGKTVIIGDDVQAGIYVDESSNFNSV----VTGEPVLVEE 336
Query: 591 LN---YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKL 647
N Y + ++ T N+ +N + +RR+ ++PF K ++++ ++A K
Sbjct: 337 KNKQPYTTVFKKTVIQST-----NELPRFKNKTNGTYRRFAIVPFKKSFSSKEDNWAIKD 391
Query: 648 ETKYTLEAKKWFLKGVKAYISKGLDVDI-----PEVCLKAKEEERQGTDTYQAWIDDCCD 702
+ Y E ++ LK K L++ P+ ++A E+ ++ DT +A++++ D
Sbjct: 392 DYIYREEVLEYVLK-------KALEISFDRFIEPQASIEALEDFKESNDTVKAFVNEWFD 444
Query: 703 IGENLWEESHSLAKSYSEYREQE 725
E+ S L Y E+ E
Sbjct: 445 KFESTRLPSRFLWWLYQEWCRDE 467
>gi|16905404|gb|AAL31318.1|L00966_1 ATP/GTP binding site motif A [African swine fever virus]
Length = 348
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 60/138 (43%), Gaps = 4/138 (2%)
Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549
+ A+ G K + G G +GK+ LM L+ G+ Y S + R A K
Sbjct: 4 LSTAIFRGLKEALMLLWLGGGCNGKTFLMRLVAMVLGDHYASKLNISLLTSCRE-TAEKP 62
Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR-LNYGNTYSESPASFTPFI 608
N + +RL G ETN+++ +N +++K+M +TAR LN + A+
Sbjct: 63 NSAFMRLKGRGYGYFEETNKSEVLNTSRLKEMVNPGDVTARELNQKQESFQMTATMV--A 120
Query: 609 VPNKHLFVRNPDDAWWRR 626
N + + D WRR
Sbjct: 121 ASNYNFIIDTTDHGTWRR 138
>gi|260858430|ref|YP_003232321.1| putative DNA primase [Escherichia coli O26:H11 str. 11368]
gi|257757079|dbj|BAI28581.1| putative DNA primase [Escherichia coli O26:H11 str. 11368]
Length = 777
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 95/238 (39%), Gaps = 27/238 (11%)
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYI---TKSTGTPFVEGEPSQ-------EFLDL 472
+ S +G ++G+LD TG KE ++ + TP V+GE + +LD
Sbjct: 408 NPSRHLIGFRNGVLDTRTGLFSPHCKENWLRTLCEVDFTPPVKGETLETHAPAFWRWLDR 467
Query: 473 VSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532
+G+ ++ D + M L Q F+ + G GGSGKS L + G +
Sbjct: 468 AAGHKPAKR--DIILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNATS 525
Query: 533 AEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLN 592
A + R A SLIRL E + A +K +TGGD ++
Sbjct: 526 ATIETLESPR-ERAALIGFSLIRL---------PDQEKWSGDGAGLKAITGGDAVSVDPK 575
Query: 593 YGNTYSES-PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKL 647
Y N YS PA V N + + RR +++ F + IA RD K+
Sbjct: 576 YQNAYSTHIPAVI--LAVNNNPMRFTDRSGGVSRRRVILHFPEQIAPEERDPQLKDKI 631
>gi|7288084|emb|CAB81819.1| hypothetical protein [Sulfolobus islandicus]
Length = 699
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 78/162 (48%), Gaps = 19/162 (11%)
Query: 488 RCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAG 547
+ +G L G K ++ + G G +GKS+ +NL+K G+ Y ++ ++ R
Sbjct: 541 QIIGYTLYPGIKFRKAFMLVGEGKNGKSSFINLVKKVLGD-YAVSISPRELFDPR----- 594
Query: 548 KANPSLIRLMGSRIV-IISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
N ++ + ++ ++E+ + + ++K++TG D +TA + + + P +F
Sbjct: 595 --NRFIVGNLYHKLANAVAESKDYSIDDMDRVKRLTGDDWITADVKF-----KDPITFKS 647
Query: 607 ----FIVPNKHLFVRNPDD-AWWRRYIVIPFDKPIANRDASF 643
I N VR+ +D A+W R++++ F + D+ F
Sbjct: 648 VAKLIIASNNMPHVRDTNDRAFWHRWVIVEFPHQFKDNDSWF 689
>gi|227830424|ref|YP_002832204.1| P4 family phage/plasmid primase [Sulfolobus islandicus L.S.2.15]
gi|227456872|gb|ACP35559.1| phage/plasmid primase, P4 family [Sulfolobus islandicus L.S.2.15]
Length = 885
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/160 (23%), Positives = 79/160 (49%), Gaps = 19/160 (11%)
Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549
+G L K ++ + G G +GKST +NL+K G +Y I+ ++ ++
Sbjct: 539 IGYTLYPEIKFRKAFMLVGEGKNGKSTFINLVKKILG-EYAISISPRELFDSQ------- 590
Query: 550 NPSLIRLMGSRIV-IISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF---T 605
N ++ + ++ ++E+ + + + K++TGGD TA + + + P +F
Sbjct: 591 NRFIVSNLYHKLANAVAESKDYSIDDMDRFKRLTGGDWFTADVKFKD-----PITFKNIA 645
Query: 606 PFIVPNKHL-FVRNPDD-AWWRRYIVIPFDKPIANRDASF 643
IV + ++ ++R+ +D A+W R+I+I F + D F
Sbjct: 646 KLIVASNNMPYIRDTNDKAFWHRWIIIEFPHQFPDDDTWF 685
>gi|194442419|ref|YP_002042010.1| bacteriophage P4 DNA primase [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|194401082|gb|ACF61304.1| bacteriophage P4 DNA primase [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
Length = 777
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 97/250 (38%), Gaps = 27/250 (10%)
Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTG---TPFVEGEPSQ-------EFLDLVS 474
+ R +G ++G+LD TG K ++ TP VEGE + +LD +
Sbjct: 410 ARRLIGFRNGVLDTATGTFSPHHKSHWLRTLCDVDFTPPVEGETLETHAPDFWRWLDRAA 469
Query: 475 GYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
G +E D + M L Q F+ + G GGSGKS L + G +A
Sbjct: 470 G--GRQEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNATSAT 527
Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
+ R A SLIRL E + A +K +TGGD ++ Y
Sbjct: 528 IETLESPR-ERAALIGFSLIRL---------PDQEKWSGDGAGLKAITGGDAVSVDPKYK 577
Query: 595 NTYSES-PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKY 651
+ YS PA V N + + RR +++ F + IA RD K+ +
Sbjct: 578 DAYSTHIPAVI--LAVNNNPMRFTDRSGGVSRRRVILHFPEQIAPDERDPQLKNKIAREL 635
Query: 652 TLEAKKWFLK 661
+ ++ K
Sbjct: 636 AVIVRQLMQK 645
>gi|300718526|ref|YP_003743329.1| Plasmid and phage DNA primase [Erwinia billingiae Eb661]
gi|299064362|emb|CAX61482.1| Plasmid and phage DNA primase [Erwinia billingiae Eb661]
Length = 776
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 57/249 (22%), Positives = 103/249 (41%), Gaps = 29/249 (11%)
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTG----TPFVEGEPSQ-------EFLD 471
+ + R +G ++G+LD T P ++ Y ++ TP V GE + ++LD
Sbjct: 407 EPARRLIGFRNGVLDTRTA-TFSPHRKDYWLRTVSDVDFTPPVTGETLESHAPHFWQWLD 465
Query: 472 LVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVI 531
+G E D + M L Q F+ + G GGSGKS + + G
Sbjct: 466 RAAG--RCAEKRDIILAALFMVLANRFDWQLFLEVTGPGGSGKSIMAEIATMLAGTDNTT 523
Query: 532 NAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARL 591
+A + +R A ++G ++I+ + E + A IK +TGGD ++
Sbjct: 524 SATIETLESSRERAA---------VIGYSLIILPD-QEKWSGDGAGIKAITGGDAVSVDP 573
Query: 592 NYGNTYSES-PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLE 648
Y + YS PA V N + + RR +++ F + +A RD +K+
Sbjct: 574 KYRDAYSTHIPAVI--LAVNNNPMRFTDRSGGVSRRRVILHFPEIVAASERDPQLKEKIR 631
Query: 649 TKYTLEAKK 657
+ + ++
Sbjct: 632 GEMAVIVRQ 640
>gi|225871340|ref|YP_002747287.1| phage DNA primase/helicase protein [Streptococcus equi subsp. equi
4047]
gi|225700744|emb|CAW95385.1| putative phage DNA primase/helicase protein [Streptococcus equi
subsp. equi 4047]
Length = 794
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 64/281 (22%), Positives = 116/281 (41%), Gaps = 45/281 (16%)
Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540
E +D+ G Q+ + I G GG+GKSTL+N+++ G +MQ
Sbjct: 516 ENIDFIFEWFGYNFYREYAIQKMLFIYGSGGTGKSTLINILREMIGADNYSAVTLQYLMQ 575
Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTA-RLNYG--NTY 597
R + G L R + ++ + A +K +TG D + A R N N Y
Sbjct: 576 ERFAKIG-----LYRKTAN---FDTDAKPQYLADGATLKMLTGEDTIHADRKNKEPINFY 627
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKK 657
+ + SF +P +R+ RR +++ DK + Q+++ KY L+
Sbjct: 628 NYAKLSFAMNELPP----MRDFSGGLKRRMMILEMDKVL-------TQEVKAKYPLDKIM 676
Query: 658 WFLKGVKAYISKGL-------DVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENL--- 707
+ G+ +GL D I + E+ +G D +++D C++GE+
Sbjct: 677 SEVPGIFNRAMEGLRKALSKRDFSISASMRSSVEKWEKGNDVVAMFLEDECELGEDFKVP 736
Query: 708 -----------WEES--HSLAKSYSEYREQELNYDRKRIST 735
++S LAK+ +R +EL+Y+ K + +
Sbjct: 737 VRDVYPAYKFYCQDSGYKPLAKNAFNHRLRELSYENKNVKS 777
>gi|324111267|gb|EGC05249.1| poxvirus D5 protein [Escherichia fergusonii B253]
Length = 777
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 64/261 (24%), Positives = 101/261 (38%), Gaps = 29/261 (11%)
Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTG----TPFVEGEPSQ-------EFLDLV 473
S R +G ++G+LD + G P L+ ++ TP V+GE + +LD
Sbjct: 410 SRRLIGFRNGVLDTQNG-TFHPHSPLHWMRTLCDVDFTPPVDGETLETHAPAFWRWLDRA 468
Query: 474 SGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
+G E D + M L Q F+ + G GGSGKS + + G +A
Sbjct: 469 AG--GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSA 526
Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593
+ R A SLIRL E + A +K +TGGD ++ Y
Sbjct: 527 TIETLESPR-ERAALTGFSLIRL---------PDQEKWSGDGAGLKAITGGDAVSVDPKY 576
Query: 594 GNTYSES-PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETK 650
+ YS PA V N + + RR ++I F + IA RD K+ +
Sbjct: 577 RDAYSTHIPAVI--LAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITRE 634
Query: 651 YTLEAKKWFLKGVKAYISKGL 671
+ + K +++ L
Sbjct: 635 LAVIVRHLMQKFSDPMLARSL 655
>gi|309796709|ref|ZP_07691114.1| nucleoside triphosphatase, D5 family [Escherichia coli MS 145-7]
gi|308119721|gb|EFO56983.1| nucleoside triphosphatase, D5 family [Escherichia coli MS 145-7]
Length = 774
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 61/238 (25%), Positives = 95/238 (39%), Gaps = 27/238 (11%)
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELY---ITKSTGTPFVEGEPSQ-------EFLDL 472
+ + +G ++G+LD TG KE + + + TP V+GE + +LD
Sbjct: 405 NPARHLIGFRNGVLDTRTGLFSPHCKENWLRTVCEVDFTPPVKGETLETHAPAFWRWLDR 464
Query: 473 VSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532
+G+ ++ D + M L Q F+ + G GGSGKS L + G +
Sbjct: 465 AAGHKPAKR--DIILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNATS 522
Query: 533 AEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLN 592
A + R A SLIRL E + A +K +TGGD ++
Sbjct: 523 ATIETLESPR-ERAALIGFSLIRL---------PDQEKWSGDGAGLKAITGGDAVSVDPK 572
Query: 593 YGNTYSES-PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKL 647
Y N YS PA V N + + RR +++ F + IA RD K+
Sbjct: 573 YQNAYSTHIPAVI--LAVNNNPMRFTDRSGGVSRRRVILHFPEQIAPEERDPQLKDKI 628
>gi|161598668|ref|YP_001569030.1| hypothetical protein pSSVx_p9 [Sulfolobus islandicus]
Length = 892
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 78/162 (48%), Gaps = 19/162 (11%)
Query: 488 RCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAG 547
+ +G L G K ++ + G G +GKS+ +NL+K G+ Y ++ ++ R
Sbjct: 541 QIIGYTLYPGIKFRKAFMLVGEGKNGKSSFINLVKKVLGD-YAVSISPRELFDPR----- 594
Query: 548 KANPSLIRLMGSRIV-IISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
N ++ + ++ ++E+ + + ++K++TG D +TA + + + P +F
Sbjct: 595 --NRFIVGNLYHKLANAVAESKDYSIDDMDRVKRLTGDDWITADVKF-----KDPITFKS 647
Query: 607 ----FIVPNKHLFVRNPDD-AWWRRYIVIPFDKPIANRDASF 643
I N VR+ +D A+W R++++ F + D+ F
Sbjct: 648 VAKLIIASNNMPHVRDTNDRAFWHRWVIVEFPHQFKDNDSWF 689
>gi|158522921|ref|YP_001530791.1| P4 family phage/plasmid primase [Desulfococcus oleovorans Hxd3]
gi|158511747|gb|ABW68714.1| phage/plasmid primase, P4 family [Desulfococcus oleovorans Hxd3]
Length = 769
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 51/231 (22%), Positives = 91/231 (39%), Gaps = 34/231 (14%)
Query: 416 SITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ-----EFL 470
I S+ ++L Q+G+ DL+ G V + + + T P+ E +Q ++L
Sbjct: 428 CILSNANQDQVKYLTLQNGLFDLDQGVLVHHSPDTFTTNLL--PYDYDELAQCPLWLKYL 485
Query: 471 DLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530
D V + ++ + + +G L ++G G +GKS +N I FG + V
Sbjct: 486 DDV--FMGDQDKIMFAQEAIGYVFLKQIPTPALFFLKGTGSNGKSVFINTITNLFGEENV 543
Query: 531 INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR 590
+ + + L G ++ IS N ++ +K + GD + R
Sbjct: 544 ASISLGSFSKEY---------YTLGLFG-KMANISGEAPNKFLSTDVVKAIVSGDWVQGR 593
Query: 591 LNYGNTYSESPASFTPFIVPNKHLFVRNPDDA-------WWRRYIVIPFDK 634
Y + P F P+ KH N + A WWRR V+ F++
Sbjct: 594 DPY-----KRPTKFRPYA---KHFIAMNEEPATDDNSYGWWRRIYVLKFER 636
>gi|299883481|ref|YP_003739032.1| hypothetical protein HacjB3_19528 [Halalkalicoccus jeotgali B3]
gi|299126907|gb|ADJ17241.1| hypothetical protein HacjB3_19528 [Halalkalicoccus jeotgali B3]
Length = 596
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 55/257 (21%), Positives = 107/257 (41%), Gaps = 30/257 (11%)
Query: 428 FLGEQDGILDL---ETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMD 484
F+ ++G+L+L + + + E K+ TP++EG +Q F+D + + ++ ++
Sbjct: 215 FICVKNGVLNLTDPDNPELEDHSPEYGFRKNMDTPYIEGAENQLFVDSLEETVQDKD-LE 273
Query: 485 YFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544
G+AL + + + G +GK T ++ I+ FG V ++ +R
Sbjct: 274 KLQEYTGIALEDWEQPTKMAVLIGPQNAGKGTYLHAIESIFGKGNVAAEPIKELADSR-- 331
Query: 545 EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604
S L + I +E + + +K +TGG + G++ E
Sbjct: 332 ------WSTNSLKDRPLNIANELSTEKVNHQEAVKTLTGGGDSKRAEDKGDSVYE----- 380
Query: 605 TPFIVPNKHLFVRN-------PDDAWWRRYIVIPFDK--PIANRDASFAQKLETKYTLEA 655
FI + HLF N D ++ R++ + F + P +RDAS +K+ A
Sbjct: 381 --FIPTSNHLFATNQLPEMPGADGIFYNRFLFVDFPQTVPKEDRDASLDEKMVESEQRRA 438
Query: 656 K--KWFLKGVKAYISKG 670
W ++G S+G
Sbjct: 439 GILNWLIEGYARIKSRG 455
>gi|218442311|ref|YP_002380637.1| primase P4 [Cyanothece sp. PCC 7424]
gi|218175415|gb|ACK74144.1| primase P4 [Cyanothece sp. PCC 7424]
Length = 1000
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 81/371 (21%), Positives = 150/371 (40%), Gaps = 50/371 (13%)
Query: 433 DGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTR---- 488
D +L+L TG+ + + ++T P+ E S +D + +E + T
Sbjct: 446 DCVLELSTGKTREHSPNNWLTWVLPRPYNSLEKSWIKID----NWLTEATLGNATHKQIL 501
Query: 489 -CVGMALLGGNK-AQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEA 546
C A+L Q+F+H+ G GGSGKST MNL+ G Q I+ + + + +
Sbjct: 502 LCYAAAVLRRRADLQKFLHLIGTGGSGKSTFMNLLVALVGQQNTISLDFNSLNEKD---- 557
Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
++ G + I + + + N + K++TG D + R Y + ++
Sbjct: 558 -----AVAEAFGKVLAIFPDQDSAGK-NISNFKKITGQDLLRGRRLYKDGFNFRFEGLC- 610
Query: 607 FIVPNKHLFVRNPDDAWW-RRYIVIPF-----DKPIANRDASFAQKLE--TKYTLEAKKW 658
V + H + W RR +++PF D + N + F +L T Y L +
Sbjct: 611 -AVSSNHPIFHSGSGRWLTRRVLMVPFELAVPDGKVRNLEKEFEPELSAFTSYLLSIPE- 668
Query: 659 FLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD--------CCDIGENL--W 708
++A + KGL+ +V + +D +W++D IG N W
Sbjct: 669 --SEIEATL-KGLNKK--QVVSSTLWSSQIRSDGLASWVNDEIIFDSTARTQIGSNAKEW 723
Query: 709 EESHSLAKS---YSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRI 765
E A S + Y R+ ++ + NL + G +KR+ + + R
Sbjct: 724 GEDDYDAASSTLFGSYCRHIRRSGRQPLTKDNFSANLIEL-LKGTLKRDVEKIKTNQGRF 782
Query: 766 IKGLKLKPAFE 776
+ G++L+ A +
Sbjct: 783 LTGVRLRTALD 793
>gi|269140755|ref|YP_003297456.1| hypothetical protein ETAE_3414 [Edwardsiella tarda EIB202]
gi|267986416|gb|ACY86245.1| hypothetical protein ETAE_3414 [Edwardsiella tarda EIB202]
Length = 775
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 61/246 (24%), Positives = 97/246 (39%), Gaps = 27/246 (10%)
Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTG---TPFVEGEPSQ-------EFLDLVS 474
+ R +G ++G+LD TG K ++ TP V GE + +LD +
Sbjct: 410 ARRLIGFRNGVLDTSTGIFSPHCKSHWLRTLCDVDFTPPVAGETLETHAPNFWRWLDRAA 469
Query: 475 GYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
G + D + M L Q F+ + G GGSGKS L + G +A+
Sbjct: 470 GGRADKR--DVILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATLLAGADNATSAD 527
Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
D +++ A SLIRL E + A +K +TGGD ++ Y
Sbjct: 528 I-DTLEDPRKRASLIGFSLIRL---------PDQEKWSGDGAGLKAITGGDAVSVDPKYQ 577
Query: 595 NTYSES-PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKY 651
N YS PA V N + + RR +++ F + IA RD K+ +
Sbjct: 578 NPYSTHIPAVI--LAVNNNPMRFTDRSGGVSRRRVILHFPEQIAPEERDPQLKDKIACEL 635
Query: 652 TLEAKK 657
+ ++
Sbjct: 636 AVIVRQ 641
>gi|194444462|ref|YP_002043737.1| bacteriophage P4 DNA primase [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|194403125|gb|ACF63347.1| bacteriophage P4 DNA primase [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
Length = 776
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 61/238 (25%), Positives = 95/238 (39%), Gaps = 27/238 (11%)
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYI---TKSTGTPFVEGEPSQ-------EFLDL 472
+ + +G ++G+LD TG KE ++ + TP V+GE + +LD
Sbjct: 407 NPARHLIGFRNGVLDTRTGLFSPHCKENWLRTLCEVDFTPPVKGETLETHAPAFWRWLDR 466
Query: 473 VSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532
+G+ ++ D + M L Q F+ + G GGSGKS L + G +
Sbjct: 467 AAGHKPAKR--DIILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNATS 524
Query: 533 AEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLN 592
A + R A SLIRL E + A +K +TGGD ++
Sbjct: 525 ATIETLESPR-ERAALIGFSLIRL---------PDQEKWSGDGAGLKAITGGDAVSVDPK 574
Query: 593 YGNTYSES-PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKL 647
Y N YS PA V N + + RR +++ F + IA RD K+
Sbjct: 575 YQNAYSTHIPAVI--LAVNNNPMRFTDRSGGVSRRRVILHFPEQIAPEERDPQLKDKI 630
>gi|313576893|gb|ADR67065.1| bacteriophage P4 DNA primase [Klebsiella pneumoniae subsp.
pneumoniae]
Length = 777
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 95/236 (40%), Gaps = 27/236 (11%)
Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTG---TPFVEGEPSQ-------EFLDLVS 474
+ R +G ++G+LD +G +K ++ TP VEGE + +LD +
Sbjct: 410 ARRLIGFRNGVLDTSSGIFSPHSKSHWLRTLCDVDFTPPVEGETLETHAPNFWRWLDRAA 469
Query: 475 GYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
++ D + M L Q F+ + G GGSGKS L + G +A+
Sbjct: 470 SRNPTKR--DVILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNATSAD 527
Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
D +++ A SLIRL E + A +K +TGGD ++ Y
Sbjct: 528 I-DTLEDPRKRASLIGFSLIRL---------PDQEKWSGDGAGLKAITGGDAVSVDPKYQ 577
Query: 595 NTYSES-PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKL 647
N YS PA V N + + RR ++I F + IA RD K+
Sbjct: 578 NPYSTHIPAVI--LAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPEERDPQLRDKI 631
>gi|238763412|ref|ZP_04624375.1| P4-specific DNA primase [Yersinia kristensenii ATCC 33638]
gi|238763493|ref|ZP_04624455.1| P4-specific DNA primase [Yersinia kristensenii ATCC 33638]
gi|238698275|gb|EEP91030.1| P4-specific DNA primase [Yersinia kristensenii ATCC 33638]
gi|238698356|gb|EEP91110.1| P4-specific DNA primase [Yersinia kristensenii ATCC 33638]
Length = 776
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 59/246 (23%), Positives = 100/246 (40%), Gaps = 31/246 (12%)
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTG---TPFVEGEPSQE-------FLDL 472
+ + +G ++G+ + TGQ KE ++ T + EGE E +LD
Sbjct: 409 EPARHLIGFRNGVFNTVTGQFSPHRKEYWLRTVNNVDYTTYKEGENLPEHAPYFWQWLDR 468
Query: 473 VSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532
+ EE + M L Q F+ + G GGSGKS + + G
Sbjct: 469 AAS--GREEKRQRILAALFMVLANRYDWQLFLEVTGPGGSGKSVMAEIATLLAGKDNTTA 526
Query: 533 AEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE--NDEINAAKIKQMTGGDCMTAR 590
A + I +R A ++G ++I+ + + DE A IK +TGGD +
Sbjct: 527 ATINTIESSRERSA---------IVGYSLIILPDQEKWSGDE---AGIKAITGGDAVMVD 574
Query: 591 LNYGNTYSES-PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK--PIANRDASFAQKL 647
Y + YS S PA V N + + RR +++ F + P+ RD K+
Sbjct: 575 PKYKDAYSTSIPAVI--LAVNNNPMRFSDRSGGVSRRRVILSFPEVIPVNERDPQMKSKI 632
Query: 648 ETKYTL 653
E++ ++
Sbjct: 633 ESELSV 638
>gi|323131092|gb|ADX18522.1| bacteriophage P4 DNA primase [Salmonella enterica subsp. enterica
serovar Typhimurium str. 4/74]
Length = 777
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 96/250 (38%), Gaps = 27/250 (10%)
Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTG---TPFVEGEPSQ-------EFLDLVS 474
+ R +G ++G+LD TG K ++ TP VEGE + +LD +
Sbjct: 410 ARRLIGFRNGVLDTATGTFSPHHKSHWLRTLCDVDFTPPVEGETLETHAPHFWRWLDRAA 469
Query: 475 GYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
G E D + M L Q F+ + G GGSGKS L + G +A
Sbjct: 470 G--GKPEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNATSAT 527
Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
+ R A SLIRL E + A +K +TGGD ++ Y
Sbjct: 528 IETLESPR-ERAALIGFSLIRL---------PDQEKWSGDGAGLKAITGGDAVSVDPKYK 577
Query: 595 NTYSES-PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKY 651
+ YS PA V N + + RR +++ F + IA RD K+ +
Sbjct: 578 DAYSTHIPAVI--LAVNNNPMRFTDRSGGVSRRRVILHFPEQIAPEERDPQLRDKIAREL 635
Query: 652 TLEAKKWFLK 661
+ ++ K
Sbjct: 636 AVIVRQLMQK 645
>gi|218442614|ref|YP_002380934.1| P4 family phage/plasmid primase [Cyanothece sp. PCC 7424]
gi|218174972|gb|ACK73704.1| phage/plasmid primase, P4 family [Cyanothece sp. PCC 7424]
Length = 1145
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 72/156 (46%), Gaps = 10/156 (6%)
Query: 433 DGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGM 492
+G+ +L TG+ V +T + G + LD + +E + F R
Sbjct: 574 NGVKNLTTGEFVPHAPGFRLTWCLPYEYSPGATCEPILDWLHSMTNGDEAIIEFIRAHLN 633
Query: 493 ALLGG-NKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANP 551
A++ G + Q ++ + G GG+GK TL L G++ ++ ++ +NR +
Sbjct: 634 AIITGRSDIQSYLELIGPGGTGKGTLTRLASALTGDRNTVSTTLRNLEENRFDTS----- 688
Query: 552 SLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCM 587
RL +R+VII++ E + + +K +TGGD +
Sbjct: 689 ---RLYQARLVIITDA-EKWGGDVSVLKAITGGDKL 720
>gi|213582465|ref|ZP_03364291.1| bacteriophage P4 DNA primase [Salmonella enterica subsp. enterica
serovar Typhi str. E98-0664]
Length = 388
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 95/250 (38%), Gaps = 27/250 (10%)
Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPF---VEGEPSQ-------EFLDLVS 474
+ R +G ++G+LD TG K ++ F VEGE + +LD +
Sbjct: 21 ARRLIGFRNGVLDTATGTFSPHHKSHWLRTLCDVDFTSPVEGETLETHAPHFWRWLDRAA 80
Query: 475 GYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
G E D + M L Q F+ + G GGSGKS L + G +A
Sbjct: 81 G--GKPEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNATSAT 138
Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
+ R A SLIRL E + A +K +TGGD ++ Y
Sbjct: 139 IETLESPR-ERAALIGFSLIRL---------PDQEKWSGDGAGLKAITGGDAVSVDPKYK 188
Query: 595 NTYSES-PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKY 651
+ YS PA V N + + RR ++I F + IA RD K+ +
Sbjct: 189 DAYSTHIPAVI--LAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPEERDPQLRDKIAREL 246
Query: 652 TLEAKKWFLK 661
+ ++ K
Sbjct: 247 AIIVRQLMQK 256
>gi|309812094|ref|ZP_07705854.1| D5-like protein [Dermacoccus sp. Ellin185]
gi|308433973|gb|EFP57845.1| D5-like protein [Dermacoccus sp. Ellin185]
Length = 875
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 83/193 (43%), Gaps = 12/193 (6%)
Query: 405 TAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDL----ETGQK--VKPTKELYITKSTGT 458
A + + S I + LD + + +G+L L E+G V E+ T G
Sbjct: 455 AAVAADLSSPMRIMTADLDPNPHAIPMSNGMLRLDDLDESGAPRLVPHAPEMLSTIKPGC 514
Query: 459 PFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQR-FIHIRGVGGSGKSTL 517
+ E + LD + E + VG LLG + + R + + G +GK+ L
Sbjct: 515 EWRGLEATSPLLDALLEALPDFETRTFLQWIVGADLLGTSTSYRWLVQLVGPESNGKTLL 574
Query: 518 MNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK 577
M+ I AFG+ + +++ P G +P ++L G R+ + E D I A +
Sbjct: 575 MDAIHGAFGDS--VRLLTDEVLGGTEP--GAPSPGQMKLRGCRLGYLEEV-PGDIIRAHQ 629
Query: 578 IKQMTGGDCMTAR 590
+K++ G ++AR
Sbjct: 630 LKRLVGTPTLSAR 642
>gi|301159308|emb|CBW18823.1| bacteriophage P4 DNA primase [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
Length = 794
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 96/250 (38%), Gaps = 27/250 (10%)
Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTG---TPFVEGEPSQ-------EFLDLVS 474
+ R +G ++G+LD TG K ++ TP VEGE + +LD +
Sbjct: 427 ARRLIGFRNGVLDTATGTFSPHHKSHWLRTLCDVDFTPPVEGETLETHAPHFWRWLDRAA 486
Query: 475 GYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
G E D + M L Q F+ + G GGSGKS L + G +A
Sbjct: 487 G--GKPEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNATSAT 544
Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
+ R A SLIRL E + A +K +TGGD ++ Y
Sbjct: 545 IETLESPR-ERAALIGFSLIRL---------PDQEKWSGDGAGLKAITGGDAVSVDPKYK 594
Query: 595 NTYSES-PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKY 651
+ YS PA V N + + RR +++ F + IA RD K+ +
Sbjct: 595 DAYSTHIPAVI--LAVNNNPMRFTDRSGGVSRRRVILHFPEQIAPEERDPQLRDKIAREL 652
Query: 652 TLEAKKWFLK 661
+ ++ K
Sbjct: 653 AVIVRQLMQK 662
>gi|169342282|ref|ZP_02863361.1| D5 N like family [Clostridium perfringens C str. JGS1495]
gi|169299663|gb|EDS81721.1| D5 N like family [Clostridium perfringens C str. JGS1495]
Length = 463
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 54/250 (21%), Positives = 106/250 (42%), Gaps = 21/250 (8%)
Query: 422 LDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFES-E 480
L+S+ R++ ++G+ DL T ++ E Y + + E F+ ++ F E
Sbjct: 103 LNSNKRYINLRNGMFDLNTYSLMEHRPEFYSSIRIPVDYNEEAECPNFIRFLNQCFNGDE 162
Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540
E ++ VG L +AQ+ + + G+G +GK +++I G + + + +++
Sbjct: 163 EAINLAQEWVGYILTAETRAQKALILYGLGKNGKGIFIDIISELIGQENISSIPMNEL-- 220
Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNEND--EINAAKIKQMTGGDCMTARLNYGNTYS 598
+RP S + + G ++ IS NE + +N K + G D +TA
Sbjct: 221 SRP-------FSRVCIYG-KLANISNENEFNGASLNTQYFKAIVGEDIITAEQKNQPVIQ 272
Query: 599 ESPASFTPFIVPNKHLFVRNPDD---AWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
P + F N + + +D A+ RR ++ F + D F + + K L
Sbjct: 273 FKPTARMVFSTNN----LPHTNDGGYAFMRRLCMLHFKNVVKEEDRDFYLREKLKEELNG 328
Query: 656 K-KWFLKGVK 664
W L G++
Sbjct: 329 IFNWALVGLR 338
>gi|315615291|gb|EFU95927.1| phage/plasmid primase, P4 family, C-terminal domain protein
[Escherichia coli 3431]
Length = 777
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 64/261 (24%), Positives = 101/261 (38%), Gaps = 29/261 (11%)
Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTG----TPFVEGEPSQ-------EFLDLV 473
S R +G ++G+LD ++G P + ++ TP VEGE + +LD
Sbjct: 410 SRRLIGFRNGVLDTQSG-TFHPHSPSHWMRTLCDVDFTPPVEGETLETHAPAFWRWLDRA 468
Query: 474 SGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
+G E D + M L Q F+ + G GGSGKS + + G +A
Sbjct: 469 AG--GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSA 526
Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593
+ R A SLIRL E + A +K +TGGD ++ Y
Sbjct: 527 TIETLESPR-ERAALTGFSLIRL---------PDQEKWSGDGAGLKAITGGDAVSVDPKY 576
Query: 594 GNTYSES-PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETK 650
+ YS PA V N + + RR ++I F + IA RD K+ +
Sbjct: 577 RDAYSTHIPAVI--LAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITRE 634
Query: 651 YTLEAKKWFLKGVKAYISKGL 671
+ + K +++ L
Sbjct: 635 LAVIVRHLMQKFSDPMLARSL 655
>gi|324020383|gb|EGB89602.1| nucleoside triphosphatase, D5 family [Escherichia coli MS 117-3]
Length = 777
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 64/261 (24%), Positives = 101/261 (38%), Gaps = 29/261 (11%)
Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTG----TPFVEGEPSQ-------EFLDLV 473
S R +G ++G+LD ++G P + ++ TP VEGE + +LD
Sbjct: 410 SRRLIGFRNGVLDTQSG-TFHPHSPSHWMRTLCDVDFTPPVEGETLETHAPAFWRWLDRA 468
Query: 474 SGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
+G E D + M L Q F+ + G GGSGKS + + G +A
Sbjct: 469 AG--GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSA 526
Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593
+ R A SLIRL E + A +K +TGGD ++ Y
Sbjct: 527 TIETLESPR-ERAALTGFSLIRL---------PDQEKWSGDGAGLKAITGGDAVSVDPKY 576
Query: 594 GNTYSES-PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETK 650
+ YS PA V N + + RR ++I F + IA RD K+ +
Sbjct: 577 RDAYSTHIPAVI--LAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITRE 634
Query: 651 YTLEAKKWFLKGVKAYISKGL 671
+ + K +++ L
Sbjct: 635 LAVIVRHLMQKFSDPMLARSL 655
>gi|157311152|ref|YP_001469197.1| primase [Streptococcus phage P9]
gi|119104301|gb|ABL61046.1| primase [Streptococcus phage P9]
Length = 497
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 73/327 (22%), Positives = 128/327 (39%), Gaps = 35/327 (10%)
Query: 433 DGILDLETGQ-KVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVG 491
+G+ DL K K EL+ S + + F + +E + D+ G
Sbjct: 171 NGVYDLRDNSFKTKFDPELHARSSHPVAYAPEAACETFEGFLRETVGAENI-DFIFEWFG 229
Query: 492 MALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANP 551
Q+ + I G GG+GKSTL+N+++ G +MQ R + G
Sbjct: 230 YNFYREYTIQKMLFIYGSGGTGKSTLINILREMIGADNYSAVTLQYLMQERFAKIG---- 285
Query: 552 SLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTA-RLNYG--NTYSESPASFTPFI 608
L R + ++ + A +K +TG D + A R N N Y+ + SF
Sbjct: 286 -LYRKTAN---FDTDAKPQYLADGATLKMLTGEDTIHADRKNKEPINFYNYAKLSFAMNE 341
Query: 609 VPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYIS 668
+P +R+ RR +++ DK + Q+++ KY L+ + G+
Sbjct: 342 LPP----MRDFSGGLKRRMMILEMDKVL-------TQEVKAKYPLDKIMSEVPGIFNRAM 390
Query: 669 KGL-------DVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEY 721
+GL D I + E+ +G D +++D C++GE+ + +Y Y
Sbjct: 391 EGLRNALSKRDFSISASMRSSVEKWEKGNDVVAMFLEDECELGEDFKVPVRDVYPAYKFY 450
Query: 722 REQELNYD---RKRISTRTVTLNLKQK 745
Q+ Y R + R LN + K
Sbjct: 451 C-QDSGYKPLARNSFTQRMNELNFENK 476
>gi|323184660|gb|EFZ70032.1| phage/plasmid primase, P4 family, C-terminal domain protein
[Escherichia coli 1357]
Length = 777
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 64/261 (24%), Positives = 101/261 (38%), Gaps = 29/261 (11%)
Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTG----TPFVEGEPSQ-------EFLDLV 473
S R +G ++G+LD ++G P + ++ TP VEGE + +LD
Sbjct: 410 SRRLIGFRNGVLDTQSG-TFHPHSPSHWMRTLCDVDFTPPVEGETLETHAPAFWRWLDRA 468
Query: 474 SGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
+G E D + M L Q F+ + G GGSGKS + + G +A
Sbjct: 469 AG--GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSA 526
Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593
+ R A SLIRL E + A +K +TGGD ++ Y
Sbjct: 527 TIETLESPR-ERAALTGFSLIRL---------PDQEKWSGDGAGLKAITGGDAVSVDPKY 576
Query: 594 GNTYSES-PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETK 650
+ YS PA V N + + RR ++I F + IA RD K+ +
Sbjct: 577 RDAYSTHIPAVI--LAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITRE 634
Query: 651 YTLEAKKWFLKGVKAYISKGL 671
+ + K +++ L
Sbjct: 635 LAVIVRHLMQKFSDPMLARSL 655
>gi|213423871|ref|ZP_03356851.1| hypothetical protein Salmonentericaenterica_41108 [Salmonella
enterica subsp. enterica serovar Typhi str. E01-6750]
Length = 401
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 64/261 (24%), Positives = 100/261 (38%), Gaps = 29/261 (11%)
Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTG----TPFVEGEPSQ-------EFLDLV 473
S R +G ++G+LD + G P + ++ TP VEGE + +LD
Sbjct: 136 SRRLIGFRNGVLDTQNG-TFHPHSPSHWMRTLCDVDFTPPVEGETLETHAPAFWRWLDRA 194
Query: 474 SGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
+G E D + M L Q F+ + G GGSGKS + + G +A
Sbjct: 195 AG--GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSA 252
Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593
+ R A SLIRL E + A +K +TGGD ++ Y
Sbjct: 253 TIETLESPR-ERAALTGFSLIRL---------PDQEKWSGDGAGLKAITGGDAVSVDPKY 302
Query: 594 GNTYSES-PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETK 650
+ YS PA V N + + RR ++I F + IA RD K+ +
Sbjct: 303 RDAYSTHIPAVI--LAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITRE 360
Query: 651 YTLEAKKWFLKGVKAYISKGL 671
+ + K +++ L
Sbjct: 361 LAVIVRHLMQKFSDPMLARSL 381
>gi|188491844|ref|ZP_02999114.1| phage/plasmid primase C-terminal domain, P4 family [Escherichia
coli 53638]
gi|188487043|gb|EDU62146.1| phage/plasmid primase C-terminal domain, P4 family [Escherichia
coli 53638]
Length = 777
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 66/261 (25%), Positives = 101/261 (38%), Gaps = 29/261 (11%)
Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTG----TPFVEGEP----SQEF---LDLV 473
S R +G ++G+LD + G P + ++ TP VEGE + EF LD
Sbjct: 410 SRRLIGFRNGVLDTQNG-TFHPHSPSHWMRTLCDVDFTPPVEGETLETHAPEFWRWLDRA 468
Query: 474 SGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
+G E D + M L Q F+ + G GGSGKS + + G +A
Sbjct: 469 AG--GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSA 526
Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593
+ R A SLIRL E + A +K +TGGD ++ Y
Sbjct: 527 TIETLESPR-ERAALTGFSLIRL---------PDQEKWSGDGAGLKAITGGDAVSVDPKY 576
Query: 594 GNTYSES-PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETK 650
+ YS PA V N + + RR ++I F + IA RD K+ +
Sbjct: 577 RDAYSTHIPAVI--LAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITRE 634
Query: 651 YTLEAKKWFLKGVKAYISKGL 671
+ + K +++ L
Sbjct: 635 LAVIVRHLMQKFSDPMLARSL 655
>gi|253687111|ref|YP_003016301.1| phage/plasmid primase, P4 family [Pectobacterium carotovorum subsp.
carotovorum PC1]
gi|251753689|gb|ACT11765.1| phage/plasmid primase, P4 family [Pectobacterium carotovorum subsp.
carotovorum PC1]
Length = 775
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 57/239 (23%), Positives = 95/239 (39%), Gaps = 25/239 (10%)
Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTG----TPFVEGEPSQEFLD-----LVSGYF 477
R +G ++G+ D +GQ KP + + + TPF GE + L
Sbjct: 412 RLIGFRNGVFDTASGQ-FKPHRREHWLNTVNDVDYTPFKAGENLADNAPHFWRWLTRAAG 470
Query: 478 ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
S + + + M L Q F+ + G GGSGKS L + G A +
Sbjct: 471 NSADKQERILAALFMVLANCYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNTTAATINT 530
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
I E+ + S+I G ++++ + E + A IK +TGGD + Y + Y
Sbjct: 531 I------ESSRERSSII---GFSLIVLPD-QEKWSGDGAGIKAITGGDAVMVDPKYRDAY 580
Query: 598 SES-PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK--PIANRDASFAQKLETKYTL 653
S PA V N + + RR ++I F + P + RD +K+ + +
Sbjct: 581 STRIPAVI--LAVNNSPMRFSDRSGGVSRRRVIIHFGETIPASERDPKLKEKIRAELAV 637
>gi|56416267|ref|YP_153342.1| hypothetical protein SPA4299 [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|197365190|ref|YP_002144827.1| hypothetical protein SSPA3993 [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|56130524|gb|AAV80030.1| hypothetical protein SPA4299 [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|197096667|emb|CAR62284.1| hypothetical protein SSPA3993 [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
Length = 777
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 91/236 (38%), Gaps = 27/236 (11%)
Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTG---TPFVEGEPSQ-------EFLDLVS 474
+ R +G ++G+LD TG K ++ TP VEGE + +LD +
Sbjct: 410 ARRLIGFRNGVLDTATGTFSPHHKSHWLRTLCDVDFTPPVEGETLETHAPHFWRWLDRAA 469
Query: 475 GYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
G E D + M L Q F+ + G GGSGKS L + G +A
Sbjct: 470 G--GKPEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNATSAT 527
Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
+ R A SLIRL E + A +K +TGGD ++ Y
Sbjct: 528 IETLESPR-ERAALIGFSLIRL---------PDQEKWSGDGAGLKAITGGDAVSVDPKYK 577
Query: 595 NTYSES-PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKL 647
+ YS PA V N + + RR +++ F + IA RD K+
Sbjct: 578 DAYSTHIPAVI--LAVNNNPMRFTDRSGGVSRRRVILHFPEQIAPEERDPQLKNKI 631
>gi|218203882|ref|YP_002364737.1| phage/plasmid primase, P4 family [Cyanothece sp. PCC 8801]
gi|218169669|gb|ACK68405.1| phage/plasmid primase, P4 family [Cyanothece sp. PCC 8801]
Length = 1172
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 108/258 (41%), Gaps = 51/258 (19%)
Query: 333 WYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYR 392
W K DK YIW L +++ A L+ + D KN P F N
Sbjct: 485 WSKDDK--YYIWQLIQEELKAIA---LIHQQRD------------KNGNKPGFSHNLVAS 527
Query: 393 RQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQ--KVKPTKEL 450
+N+ + S S+E L ++G+L+L+T + + P L
Sbjct: 528 IENLLKGSLPVRQWDSIEG----------------LLPLKNGVLNLKTQEFHQHDPKYCL 571
Query: 451 -YITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGG-NKAQRFIHIRG 508
Y P P ++L+ ++G + +M F R A++ G + Q ++ + G
Sbjct: 572 TYCLPYEYNPLATCHPILDWLNQMTG---GDRIMVEFFRAHLAAIVRGRSDIQSYLELLG 628
Query: 509 VGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN 568
GG+GK TL L G+Q ++ ++ +NR A R+ G+++V+I++
Sbjct: 629 PGGTGKGTLTRLATALVGDQNTVSTTLKNLEENRFDTA--------RIFGAKLVVITDAE 680
Query: 569 E-NDEINAAKIKQMTGGD 585
+ E++ +K +TG D
Sbjct: 681 KFGGEVSV--LKALTGED 696
>gi|16763293|ref|NP_458910.1| bacteriophage P4 DNA primase [Salmonella enterica subsp. enterica
serovar Typhi str. CT18]
gi|213648797|ref|ZP_03378850.1| bacteriophage P4 DNA primase [Salmonella enterica subsp. enterica
serovar Typhi str. J185]
gi|289824541|ref|ZP_06544100.1| bacteriophage P4 DNA primase [Salmonella enterica subsp. enterica
serovar Typhi str. E98-3139]
gi|25301728|pir||AE1063 Bacteriophage P4 DNA primase (EC 2.7.7.-) [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|16505601|emb|CAD06954.1| Bacteriophage P4 DNA primase [Salmonella enterica subsp. enterica
serovar Typhi]
Length = 777
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 95/250 (38%), Gaps = 27/250 (10%)
Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPF---VEGEPSQ-------EFLDLVS 474
+ R +G ++G+LD TG K ++ F VEGE + +LD +
Sbjct: 410 ARRLIGFRNGVLDTATGTFSPHHKSHWLRTLCDVDFTSPVEGETLETHAPHFWRWLDRAA 469
Query: 475 GYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
G E D + M L Q F+ + G GGSGKS L + G +A
Sbjct: 470 G--GKPEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNATSAT 527
Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
+ R A SLIRL E + A +K +TGGD ++ Y
Sbjct: 528 IETLESPR-ERAALIGFSLIRL---------PDQEKWSGDGAGLKAITGGDAVSVDPKYK 577
Query: 595 NTYSES-PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKY 651
+ YS PA V N + + RR ++I F + IA RD K+ +
Sbjct: 578 DAYSTHIPAVI--LAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPEERDPQLRDKIAREL 635
Query: 652 TLEAKKWFLK 661
+ ++ K
Sbjct: 636 AIIVRQLMQK 645
>gi|301047471|ref|ZP_07194548.1| nucleoside triphosphatase, D5 family [Escherichia coli MS 185-1]
gi|300300586|gb|EFJ56971.1| nucleoside triphosphatase, D5 family [Escherichia coli MS 185-1]
Length = 680
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 64/261 (24%), Positives = 100/261 (38%), Gaps = 29/261 (11%)
Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTG----TPFVEGEPSQ-------EFLDLV 473
S R +G ++G+LD + G P + ++ TP VEGE + +LD
Sbjct: 313 SRRLIGFRNGVLDTQNG-TFHPHSPSHWMRTLCDVDFTPPVEGETLENHAPAFWRWLDRA 371
Query: 474 SGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
+G E D + M L Q F+ + G GGSGKS + + G +A
Sbjct: 372 AG--GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSA 429
Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593
+ R A SLIRL E + A +K +TGGD ++ Y
Sbjct: 430 TIETLESPR-ERAALTGFSLIRL---------PDQEKWSGDGAGLKAITGGDAVSVDPKY 479
Query: 594 GNTYSES-PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETK 650
+ YS PA V N + + RR ++I F + IA RD K+ +
Sbjct: 480 RDAYSTHIPAVI--LAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITRE 537
Query: 651 YTLEAKKWFLKGVKAYISKGL 671
+ + K +++ L
Sbjct: 538 LAVIVRHLMQKFSDPMLARSL 558
>gi|323181592|gb|EFZ67012.1| phage/plasmid primase, P4 family, C-terminal domain protein
[Escherichia coli 1357]
Length = 680
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 64/261 (24%), Positives = 100/261 (38%), Gaps = 29/261 (11%)
Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTG----TPFVEGEPSQ-------EFLDLV 473
S R +G ++G+LD + G P + ++ TP VEGE + +LD
Sbjct: 313 SRRLIGFRNGVLDTQNG-TFHPHSPSHWMRTLCDVDFTPPVEGETLETHAPAFWRWLDRA 371
Query: 474 SGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
+G E D + M L Q F+ + G GGSGKS + + G +A
Sbjct: 372 AG--GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSA 429
Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593
+ R A SLIRL E + A +K +TGGD ++ Y
Sbjct: 430 TIETLESPR-ERAALTGFSLIRL---------PDQEKWSGDGAGLKAITGGDAVSVDPKY 479
Query: 594 GNTYSES-PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETK 650
+ YS PA V N + + RR ++I F + IA RD K+ +
Sbjct: 480 RDAYSTHIPAVI--LAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITRE 537
Query: 651 YTLEAKKWFLKGVKAYISKGL 671
+ + K +++ L
Sbjct: 538 LAVIVRHLMQKFSDPMLARSL 558
>gi|256818700|ref|YP_003135767.1| phage/plasmid primase, P4 family [Cyanothece sp. PCC 8802]
gi|256592440|gb|ACV03310.1| phage/plasmid primase, P4 family [Cyanothece sp. PCC 8802]
Length = 1172
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 60/258 (23%), Positives = 108/258 (41%), Gaps = 51/258 (19%)
Query: 333 WYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYR 392
W K DK YIW L +++ A L+ + D KN P F N
Sbjct: 485 WSKDDK--YYIWQLIQEELKAIA---LIHQQRD------------KNGNKPGFSHNLVAS 527
Query: 393 RQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQ--KVKPTKEL 450
+N+ + S S+E L ++G+L+L+T + + P L
Sbjct: 528 IENLLKGSLPVRQWDSIEG----------------LLPLKNGVLNLKTQEFHQHDPKYCL 571
Query: 451 -YITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGG-NKAQRFIHIRG 508
Y P P ++L+ ++G + +M F R A++ G + Q ++ + G
Sbjct: 572 TYCLPYEYNPLATCHPILDWLNQMTG---GDRIMVEFFRAHLAAIVRGRSDIQSYLELLG 628
Query: 509 VGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN 568
GG+GK TL L G+Q ++ ++ +NR A R+ G+++V+I++
Sbjct: 629 PGGTGKGTLTRLATALVGDQNTVSTTLKNLEENRFDTA--------RIFGAKLVVITDAE 680
Query: 569 E-NDEINAAKIKQMTGGD 585
+ E++ +K +TG D
Sbjct: 681 KFGGEVSV--LKALTGED 696
>gi|168785548|ref|ZP_02810555.1| nucleoside triphosphatase, D5 family [Escherichia coli O157:H7 str.
EC869]
gi|189374573|gb|EDU92989.1| nucleoside triphosphatase, D5 family [Escherichia coli O157:H7 str.
EC869]
gi|195957495|gb|ACG59606.1| D5 family nucleoside triphosphatase [Escherichia coli O157:H7]
Length = 777
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 64/261 (24%), Positives = 100/261 (38%), Gaps = 29/261 (11%)
Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTG----TPFVEGEPSQ-------EFLDLV 473
S R +G ++G+LD + G P + ++ TP VEGE + +LD
Sbjct: 410 SRRLIGFRNGVLDTQNG-TFHPHSPSHWMRTLCDVDFTPPVEGETLETHAPAFWRWLDRA 468
Query: 474 SGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
+G E D + M L Q F+ + G GGSGKS + + G +A
Sbjct: 469 AG--GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSA 526
Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593
+ R A SLIRL E + A +K +TGGD ++ Y
Sbjct: 527 TIETLESPR-ERAALTGFSLIRL---------PDQEKWSGDGAGLKAITGGDAVSVDPKY 576
Query: 594 GNTYSES-PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETK 650
+ YS PA V N + + RR ++I F + IA RD K+ +
Sbjct: 577 RDAYSTHIPAVI--LAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITRE 634
Query: 651 YTLEAKKWFLKGVKAYISKGL 671
+ + K +++ L
Sbjct: 635 LAVIVRHLMQKFSDPMLARSL 655
>gi|323183679|gb|EFZ69075.1| phage/plasmid primase, P4 family, C-terminal domain protein
[Escherichia coli 1357]
Length = 777
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 64/261 (24%), Positives = 100/261 (38%), Gaps = 29/261 (11%)
Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTG----TPFVEGEPSQ-------EFLDLV 473
S R +G ++G+LD + G P + ++ TP VEGE + +LD
Sbjct: 410 SRRLIGFRNGVLDTQNG-TFHPHSPSHWMRTLCDVDFTPPVEGETLETHAPAFWRWLDRA 468
Query: 474 SGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
+G E D + M L Q F+ + G GGSGKS + + G +A
Sbjct: 469 AG--GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSA 526
Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593
+ R A SLIRL E + A +K +TGGD ++ Y
Sbjct: 527 TIETLESPR-ERAALTGFSLIRL---------PDQEKWSGDGAGLKAITGGDAVSVDPKY 576
Query: 594 GNTYSES-PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETK 650
+ YS PA V N + + RR ++I F + IA RD K+ +
Sbjct: 577 RDAYSTHIPAVI--LAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITRE 634
Query: 651 YTLEAKKWFLKGVKAYISKGL 671
+ + K +++ L
Sbjct: 635 LAVIVRHLMQKFSDPMLARSL 655
>gi|294492921|gb|ADE91677.1| prophage LambdaSa04, DNA primase, P4 family [Escherichia coli
IHE3034]
Length = 777
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 64/261 (24%), Positives = 100/261 (38%), Gaps = 29/261 (11%)
Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTG----TPFVEGEPSQ-------EFLDLV 473
S R +G ++G+LD + G P + ++ TP VEGE + +LD
Sbjct: 410 SRRLIGFRNGVLDTQNG-TFHPHSPSHWMRTLCDVDFTPPVEGETLETHAPAFWRWLDRA 468
Query: 474 SGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
+G E D + M L Q F+ + G GGSGKS + + G +A
Sbjct: 469 AG--GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSA 526
Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593
+ R A SLIRL E + A +K +TGGD ++ Y
Sbjct: 527 TIETLESPR-ERAALTGFSLIRL---------PDQEKWSGDGAGLKAITGGDAVSVDPKY 576
Query: 594 GNTYSES-PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETK 650
+ YS PA V N + + RR ++I F + IA RD K+ +
Sbjct: 577 RDAYSTHIPAVI--LAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITRE 634
Query: 651 YTLEAKKWFLKGVKAYISKGL 671
+ + K +++ L
Sbjct: 635 LAVIVRHLMQKFSDPMLARSL 655
>gi|213613130|ref|ZP_03370956.1| bacteriophage P4 DNA primase [Salmonella enterica subsp. enterica
serovar Typhi str. E98-2068]
Length = 649
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 95/250 (38%), Gaps = 27/250 (10%)
Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPF---VEGEPSQ-------EFLDLVS 474
+ R +G ++G+LD TG K ++ F VEGE + +LD +
Sbjct: 410 ARRLIGFRNGVLDTATGTFSPHHKSHWLRTLCDVDFTSPVEGETLETHAPHFWRWLDRAA 469
Query: 475 GYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
G E D + M L Q F+ + G GGSGKS L + G +A
Sbjct: 470 G--GKPEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNATSAT 527
Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
+ R A SLIRL E + A +K +TGGD ++ Y
Sbjct: 528 IETLESPR-ERAALIGFSLIRL---------PDQEKWSGDGAGLKAITGGDAVSVDPKYK 577
Query: 595 NTYSES-PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKY 651
+ YS PA V N + + RR ++I F + IA RD K+ +
Sbjct: 578 DAYSTHIPAVI--LAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPEERDPQLRDKIAREL 635
Query: 652 TLEAKKWFLK 661
+ ++ K
Sbjct: 636 AIIVRQLMQK 645
>gi|254038870|ref|ZP_04872922.1| nucleoside triphosphatase [Escherichia sp. 1_1_43]
gi|226838835|gb|EEH70862.1| nucleoside triphosphatase [Escherichia sp. 1_1_43]
Length = 780
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 64/261 (24%), Positives = 100/261 (38%), Gaps = 29/261 (11%)
Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTG----TPFVEGEPSQ-------EFLDLV 473
S R +G ++G+LD + G P + ++ TP VEGE + +LD
Sbjct: 410 SRRLIGFRNGVLDTQNG-TFHPHSPSHWMRTLCDVDFTPPVEGETLETHAPAFWRWLDRA 468
Query: 474 SGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
+G E D + M L Q F+ + G GGSGKS + + G +A
Sbjct: 469 AG--GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSA 526
Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593
+ R A SLIRL E + A +K +TGGD ++ Y
Sbjct: 527 TIETLESPR-ERAALTGFSLIRL---------PDQEKWSGDGAGLKAITGGDAVSVDPKY 576
Query: 594 GNTYSES-PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETK 650
+ YS PA V N + + RR ++I F + IA RD K+ +
Sbjct: 577 RDAYSTHIPAVI--LAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITRE 634
Query: 651 YTLEAKKWFLKGVKAYISKGL 671
+ + K +++ L
Sbjct: 635 LAVIVRHLMQKFSDPMLARSL 655
>gi|323944124|gb|EGB40204.1| poxvirus D5 protein [Escherichia coli H120]
Length = 780
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 64/261 (24%), Positives = 100/261 (38%), Gaps = 29/261 (11%)
Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTG----TPFVEGEPSQ-------EFLDLV 473
S R +G ++G+LD + G P + ++ TP VEGE + +LD
Sbjct: 410 SRRLIGFRNGVLDTQNG-TFHPHSPSHWMRTLCDVDFTPPVEGETLENHAPAFWRWLDRA 468
Query: 474 SGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
+G E D + M L Q F+ + G GGSGKS + + G +A
Sbjct: 469 AG--GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSA 526
Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593
+ R A SLIRL E + A +K +TGGD ++ Y
Sbjct: 527 TIETLESPR-ERAALTGFSLIRL---------PDQEKWSGDGAGLKAITGGDAVSVDPKY 576
Query: 594 GNTYSES-PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETK 650
+ YS PA V N + + RR ++I F + IA RD K+ +
Sbjct: 577 RDAYSTHIPAVI--LAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITRE 634
Query: 651 YTLEAKKWFLKGVKAYISKGL 671
+ + K +++ L
Sbjct: 635 LAVIVRHLMQKFSDPMLARSL 655
>gi|29143025|ref|NP_806367.1| hypothetical protein t2656 [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|29138658|gb|AAO70227.1| hypothetical protein t2656 [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
Length = 777
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 64/261 (24%), Positives = 100/261 (38%), Gaps = 29/261 (11%)
Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTG----TPFVEGEPSQ-------EFLDLV 473
S R +G ++G+LD + G P + ++ TP VEGE + +LD
Sbjct: 410 SRRLIGFRNGVLDTQNG-TFHPHSPSHWMRTLCDVDFTPPVEGETLETHAPAFWRWLDRA 468
Query: 474 SGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
+G E D + M L Q F+ + G GGSGKS + + G +A
Sbjct: 469 AG--GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSA 526
Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593
+ R A SLIRL E + A +K +TGGD ++ Y
Sbjct: 527 TIETLESPR-ERAALTGFSLIRL---------PDQEKWSGDGAGLKAITGGDAVSVDPKY 576
Query: 594 GNTYSES-PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETK 650
+ YS PA V N + + RR ++I F + IA RD K+ +
Sbjct: 577 RDAYSTHIPAVI--LAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITRE 634
Query: 651 YTLEAKKWFLKGVKAYISKGL 671
+ + K +++ L
Sbjct: 635 LAVIVRHLMQKFSDPMLARSL 655
>gi|170018102|ref|YP_001723056.1| P4 family phage/plasmid primase [Escherichia coli ATCC 8739]
gi|169753030|gb|ACA75729.1| phage/plasmid primase, P4 family [Escherichia coli ATCC 8739]
Length = 777
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 64/261 (24%), Positives = 100/261 (38%), Gaps = 29/261 (11%)
Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTG----TPFVEGEPSQ-------EFLDLV 473
S R +G ++G+LD + G P + ++ TP VEGE + +LD
Sbjct: 410 SRRLIGFRNGVLDTQNG-TFHPHSPSHWMRTLCDVDFTPPVEGETLETHAPAFWRWLDRA 468
Query: 474 SGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
+G E D + M L Q F+ + G GGSGKS + + G +A
Sbjct: 469 AG--GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSA 526
Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593
+ R A SLIRL E + A +K +TGGD ++ Y
Sbjct: 527 TIETLESPR-ERAALTGFSLIRL---------PDQEKWSGDGAGLKAITGGDAVSVDPKY 576
Query: 594 GNTYSES-PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETK 650
+ YS PA V N + + RR ++I F + IA RD K+ +
Sbjct: 577 RDAYSTHIPAVI--LAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITRE 634
Query: 651 YTLEAKKWFLKGVKAYISKGL 671
+ + K +++ L
Sbjct: 635 LAVIVRHLMQKFSDPMLARSL 655
>gi|191170424|ref|ZP_03031977.1| nucleoside triphosphatase, D5 family [Escherichia coli F11]
gi|300988773|ref|ZP_07178815.1| nucleoside triphosphatase, D5 family [Escherichia coli MS 200-1]
gi|190909232|gb|EDV68818.1| nucleoside triphosphatase, D5 family [Escherichia coli F11]
gi|300305841|gb|EFJ60361.1| nucleoside triphosphatase, D5 family [Escherichia coli MS 200-1]
gi|324012684|gb|EGB81903.1| nucleoside triphosphatase, D5 family [Escherichia coli MS 60-1]
Length = 777
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 64/261 (24%), Positives = 100/261 (38%), Gaps = 29/261 (11%)
Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTG----TPFVEGEPSQ-------EFLDLV 473
S R +G ++G+LD + G P + ++ TP VEGE + +LD
Sbjct: 410 SRRLIGFRNGVLDTQNG-TFHPHSPSHWMRTLCDVDFTPPVEGETLETHAPAFWRWLDRA 468
Query: 474 SGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
+G E D + M L Q F+ + G GGSGKS + + G +A
Sbjct: 469 AG--GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSA 526
Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593
+ R A SLIRL E + A +K +TGGD ++ Y
Sbjct: 527 TIETLESPR-ERAALTGFSLIRL---------PDQEKWSGDGAGLKAITGGDAVSVDPKY 576
Query: 594 GNTYSES-PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETK 650
+ YS PA V N + + RR ++I F + IA RD K+ +
Sbjct: 577 RDAYSTHIPAVI--LAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITRE 634
Query: 651 YTLEAKKWFLKGVKAYISKGL 671
+ + K +++ L
Sbjct: 635 LAVIVRHLMQKFSDPMLARSL 655
>gi|82546473|ref|YP_410420.1| DNA primase [Shigella boydii Sb227]
gi|81247884|gb|ABB68592.1| putative DNA primase [Shigella boydii Sb227]
gi|320184529|gb|EFW59331.1| DNA primase , phage-associated [Shigella flexneri CDC 796-83]
gi|332086985|gb|EGI92119.1| phage/plasmid primase, P4 family, C-terminal domain protein
[Shigella boydii 3594-74]
Length = 777
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 64/261 (24%), Positives = 100/261 (38%), Gaps = 29/261 (11%)
Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTG----TPFVEGEPSQ-------EFLDLV 473
S R +G ++G+LD + G P + ++ TP VEGE + +LD
Sbjct: 410 SRRLIGFRNGVLDTQNG-TFHPHSPSHWMRTLCDVDFTPPVEGETLETHAPAFWRWLDRA 468
Query: 474 SGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
+G E D + M L Q F+ + G GGSGKS + + G +A
Sbjct: 469 AG--GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSA 526
Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593
+ R A SLIRL E + A +K +TGGD ++ Y
Sbjct: 527 TIETLESPR-ERAALTGFSLIRL---------PDQEKWSGDGAGLKAITGGDAVSVDPKY 576
Query: 594 GNTYSES-PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETK 650
+ YS PA V N + + RR ++I F + IA RD K+ +
Sbjct: 577 RDAYSTHIPAVI--LAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITRE 634
Query: 651 YTLEAKKWFLKGVKAYISKGL 671
+ + K +++ L
Sbjct: 635 LAVIVRHLMQKFSDPMLARSL 655
>gi|331648374|ref|ZP_08349462.1| putative P4-specific DNA primase [Escherichia coli M605]
gi|331042121|gb|EGI14263.1| putative P4-specific DNA primase [Escherichia coli M605]
Length = 777
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 64/261 (24%), Positives = 100/261 (38%), Gaps = 29/261 (11%)
Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTG----TPFVEGEPSQ-------EFLDLV 473
S R +G ++G+LD + G P + ++ TP VEGE + +LD
Sbjct: 410 SRRLIGFRNGVLDTQNG-TFHPHSPSHWMRTLCDVDFTPPVEGETLETHAPAFWRWLDRA 468
Query: 474 SGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
+G E D + M L Q F+ + G GGSGKS + + G +A
Sbjct: 469 AG--GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSA 526
Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593
+ R A SLIRL E + A +K +TGGD ++ Y
Sbjct: 527 TIETLESPR-ERAALTGFSLIRL---------PDQEKWSGDGAGLKAITGGDAVSVDPKY 576
Query: 594 GNTYSES-PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETK 650
+ YS PA V N + + RR ++I F + IA RD K+ +
Sbjct: 577 RDAYSTHIPAVI--LAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITRE 634
Query: 651 YTLEAKKWFLKGVKAYISKGL 671
+ + K +++ L
Sbjct: 635 LAVIVRHLMQKFSDPMLARSL 655
>gi|195957614|gb|ACG59723.1| nucleoside triphosphatase [Escherichia coli]
Length = 777
Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 64/261 (24%), Positives = 100/261 (38%), Gaps = 29/261 (11%)
Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTG----TPFVEGEPSQ-------EFLDLV 473
S R +G ++G+LD + G P + ++ TP VEGE + +LD
Sbjct: 410 SRRLIGFRNGVLDTQNG-TFHPHSPSHWMRTLCDVDFTPPVEGETLETHAPAFWRWLDRA 468
Query: 474 SGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
+G E D + M L Q F+ + G GGSGKS + + G +A
Sbjct: 469 AG--GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSA 526
Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593
+ R A SLIRL E + A +K +TGGD ++ Y
Sbjct: 527 TIETLESPR-ERAALTGFSLIRL---------PDQEKWSGDGAGLKAITGGDAVSVDPKY 576
Query: 594 GNTYSES-PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETK 650
+ YS PA V N + + RR ++I F + IA RD K+ +
Sbjct: 577 RDAYSTHIPAVI--LAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITRE 634
Query: 651 YTLEAKKWFLKGVKAYISKGL 671
+ + K +++ L
Sbjct: 635 LAVIVRHLMQKFSDPMLARSL 655
>gi|320197261|gb|EFW71877.1| DNA primase, phage-associated [Escherichia coli WV_060327]
Length = 777
Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 64/261 (24%), Positives = 100/261 (38%), Gaps = 29/261 (11%)
Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTG----TPFVEGEPSQ-------EFLDLV 473
S R +G ++G+LD + G P + ++ TP VEGE + +LD
Sbjct: 410 SRRLIGFRNGVLDTQNG-TFHPHSPSHWMRTLCDVDFTPPVEGETLETHAPAFWRWLDRA 468
Query: 474 SGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
+G E D + M L Q F+ + G GGSGKS + + G +A
Sbjct: 469 AG--GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSA 526
Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593
+ R A SLIRL E + A +K +TGGD ++ Y
Sbjct: 527 TIETLESPR-ERAALTGFSLIRL---------PDQEKWSGDGAGLKAITGGDAVSVDPKY 576
Query: 594 GNTYSES-PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETK 650
+ YS PA V N + + RR ++I F + IA RD K+ +
Sbjct: 577 RDAYSTHIPAVI--LAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITRE 634
Query: 651 YTLEAKKWFLKGVKAYISKGL 671
+ + K +++ L
Sbjct: 635 LAVIVRHLMQKFSDPMLARSL 655
>gi|15829557|ref|NP_308330.1| DNA primase [Escherichia coli O157:H7 str. Sakai]
gi|168749120|ref|ZP_02774142.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC4113]
gi|168755822|ref|ZP_02780829.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC4401]
gi|168761913|ref|ZP_02786920.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC4501]
gi|168769623|ref|ZP_02794630.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC4486]
gi|168775431|ref|ZP_02800438.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC4196]
gi|168782620|ref|ZP_02807627.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC4076]
gi|168788540|ref|ZP_02813547.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC869]
gi|168799812|ref|ZP_02824819.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC508]
gi|195937755|ref|ZP_03083137.1| putative DNA primase [Escherichia coli O157:H7 str. EC4024]
gi|208809690|ref|ZP_03252027.1| putative nucleoside triphosphatase, D5 family [Escherichia coli
O157:H7 str. EC4206]
gi|208814873|ref|ZP_03256052.1| putative nucleoside triphosphatase, D5 family [Escherichia coli
O157:H7 str. EC4045]
gi|208822948|ref|ZP_03263266.1| putative nucleoside triphosphatase, D5 family [Escherichia coli
O157:H7 str. EC4042]
gi|209396448|ref|YP_002268896.1| putative nucleoside triphosphatase, D5 family [Escherichia coli
O157:H7 str. EC4115]
gi|217324819|ref|ZP_03440903.1| nucleoside triphosphatase, D5 family [Escherichia coli O157:H7 str.
TW14588]
gi|254791433|ref|YP_003076270.1| alpha replication protein of prophage CP-933I [Escherichia coli
O157:H7 str. TW14359]
gi|261223633|ref|ZP_05937914.1| alpha replication protein of prophage CP-933I [Escherichia coli
O157:H7 str. FRIK2000]
gi|261255948|ref|ZP_05948481.1| alpha replication protein of prophage CP-933I [Escherichia coli
O157:H7 str. FRIK966]
gi|13359760|dbj|BAB33726.1| putative DNA primase [Escherichia coli O157:H7 str. Sakai]
gi|187769062|gb|EDU32906.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC4196]
gi|188016499|gb|EDU54621.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC4113]
gi|188999907|gb|EDU68893.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC4076]
gi|189356863|gb|EDU75282.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC4401]
gi|189361353|gb|EDU79772.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC4486]
gi|189367685|gb|EDU86101.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC4501]
gi|189371667|gb|EDU90083.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC869]
gi|189377822|gb|EDU96238.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC508]
gi|208729491|gb|EDZ79092.1| putative nucleoside triphosphatase, D5 family [Escherichia coli
O157:H7 str. EC4206]
gi|208731521|gb|EDZ80209.1| putative nucleoside triphosphatase, D5 family [Escherichia coli
O157:H7 str. EC4045]
gi|208737141|gb|EDZ84825.1| putative nucleoside triphosphatase, D5 family [Escherichia coli
O157:H7 str. EC4042]
gi|209157848|gb|ACI35281.1| putative nucleoside triphosphatase, D5 family [Escherichia coli
O157:H7 str. EC4115]
gi|217321040|gb|EEC29464.1| nucleoside triphosphatase, D5 family [Escherichia coli O157:H7 str.
TW14588]
gi|254590833|gb|ACT70194.1| alpha replication protein of prophage CP-933I [Escherichia coli
O157:H7 str. TW14359]
gi|320192406|gb|EFW67050.1| DNA primase , phage-associated [Escherichia coli O157:H7 str.
EC1212]
gi|320638547|gb|EFX08255.1| alpha replication protein of prophage CP-933I [Escherichia coli
O157:H7 str. G5101]
gi|320644008|gb|EFX13088.1| alpha replication protein of prophage CP-933I [Escherichia coli
O157:H- str. 493-89]
gi|320649290|gb|EFX17841.1| alpha replication protein of prophage CP-933I [Escherichia coli
O157:H- str. H 2687]
gi|326338838|gb|EGD62656.1| DNA primase , phage-associated [Escherichia coli O157:H7 str. 1125]
gi|326343458|gb|EGD67222.1| DNA primase , phage-associated [Escherichia coli O157:H7 str. 1044]
Length = 777
Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 103/250 (41%), Gaps = 31/250 (12%)
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPF---VEGEPSQ-------EFLDL 472
+ + + +G ++G+LD TG K+ ++ + V+GE + +LD
Sbjct: 408 NPARQLIGFRNGVLDTRTGLFSPHDKKHWLRTLCEVDYTQPVDGESLETHAPAFWRWLDR 467
Query: 473 VSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532
+G+ + E D + M L Q F+ + G GGSGKS L + G N
Sbjct: 468 AAGF--NPEKRDIILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATMLAGED---N 522
Query: 533 AEASDI-MQNRPPE-AGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR 590
A ++ I M P E A SLIRL E + A +K +TGGD ++
Sbjct: 523 ATSATIEMLESPRERAALIGFSLIRL---------PDQEKWSGDGAGLKAITGGDAVSVD 573
Query: 591 LNYGNTYSES-PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKL 647
Y N YS PA V N + + RR +++ F IA RD +K+
Sbjct: 574 PKYQNAYSTHIPAVI--LAVNNNPMRFTDRSGGVSRRRVILHFPDQIAPEERDTQLKEKI 631
Query: 648 ETKYTLEAKK 657
++ + ++
Sbjct: 632 ASELAVIVRQ 641
>gi|320665356|gb|EFX32443.1| alpha replication protein of prophage CP-933I [Escherichia coli
O157:H7 str. LSU-61]
Length = 777
Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 103/250 (41%), Gaps = 31/250 (12%)
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPF---VEGEPSQ-------EFLDL 472
+ + + +G ++G+LD TG K+ ++ + V+GE + +LD
Sbjct: 408 NPARQLIGFRNGVLDTRTGLFSPHDKKHWLRTLCEVDYTQPVDGESLETHAPAFWRWLDR 467
Query: 473 VSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532
+G+ + E D + M L Q F+ + G GGSGKS L + G N
Sbjct: 468 AAGF--NPEKRDIILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATMLAGED---N 522
Query: 533 AEASDI-MQNRPPE-AGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR 590
A ++ I M P E A SLIRL E + A +K +TGGD ++
Sbjct: 523 ATSATIEMLESPRERAALIGFSLIRL---------PDQEKWSGDGAGLKAITGGDAVSVD 573
Query: 591 LNYGNTYSES-PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKL 647
Y N YS PA V N + + RR +++ F IA RD +K+
Sbjct: 574 PKYQNAYSTHIPAVI--LAVNNNPMRFTDRSGGVSRRRVILHFPDQIAPEERDTQLKEKI 631
Query: 648 ETKYTLEAKK 657
++ + ++
Sbjct: 632 ASELAVIVRQ 641
>gi|15799978|ref|NP_285990.1| alpha replication protein of prophage CP-933I [Escherichia coli
O157:H7 EDL933]
gi|12513053|gb|AAG54598.1|AE005204_8 alpha replication protein of prophage CP-933I [Escherichia coli
O157:H7 str. EDL933]
Length = 796
Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 103/250 (41%), Gaps = 31/250 (12%)
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPF---VEGEPSQ-------EFLDL 472
+ + + +G ++G+LD TG K+ ++ + V+GE + +LD
Sbjct: 427 NPARQLIGFRNGVLDTRTGLFSPHDKKHWLRTLCEVDYTQPVDGESLETHAPAFWRWLDR 486
Query: 473 VSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532
+G+ + E D + M L Q F+ + G GGSGKS L + G N
Sbjct: 487 AAGF--NPEKRDIILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATMLAGED---N 541
Query: 533 AEASDI-MQNRPPE-AGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR 590
A ++ I M P E A SLIRL E + A +K +TGGD ++
Sbjct: 542 ATSATIEMLESPRERAALIGFSLIRL---------PDQEKWSGDGAGLKAITGGDAVSVD 592
Query: 591 LNYGNTYSES-PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKL 647
Y N YS PA V N + + RR +++ F IA RD +K+
Sbjct: 593 PKYQNAYSTHIPAVI--LAVNNNPMRFTDRSGGVSRRRVILHFPDQIAPEERDTQLKEKI 650
Query: 648 ETKYTLEAKK 657
++ + ++
Sbjct: 651 ASELAVIVRQ 660
>gi|320193611|gb|EFW68246.1| DNA primase, phage-associated [Escherichia coli WV_060327]
Length = 777
Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 101/261 (38%), Gaps = 29/261 (11%)
Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTG----TPFVEGEPSQ-------EFLDLV 473
S R +G ++G+LD + G P + + ++ TP V+GE + +LD
Sbjct: 410 SRRLIGFRNGVLDTQNG-TFHPHRPSHWMRTLCDVDFTPPVDGETLETHAPAFWRWLDRA 468
Query: 474 SGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
+G E D + M L Q F+ + G GGSGKS + + G +A
Sbjct: 469 AG--GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSA 526
Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593
+ R A SLIRL E + A +K +TGGD ++ Y
Sbjct: 527 TIETLESPR-ERAALTGFSLIRL---------PDQEKWSGDGAGLKAITGGDAVSVDPKY 576
Query: 594 GNTYSES-PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETK 650
+ YS PA V N + + RR ++I F + IA RD K+ +
Sbjct: 577 RDAYSTHIPAVI--LAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITRE 634
Query: 651 YTLEAKKWFLKGVKAYISKGL 671
+ + K +++ L
Sbjct: 635 LAVIVRHLMQKFSDPMLARSL 655
>gi|320662430|gb|EFX29819.1| Alpha replication protein of prophage CP-933I [Escherichia coli
O55:H7 str. USDA 5905]
Length = 777
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 103/250 (41%), Gaps = 31/250 (12%)
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPF---VEGEPSQ-------EFLDL 472
+ + + +G ++G+LD TG K+ ++ + V+GE + +LD
Sbjct: 408 NPARQLIGFRNGVLDTRTGLFSPHDKKHWLRTLCEVDYTQPVDGESLETHAPAFWRWLDR 467
Query: 473 VSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532
+G+ + E D + M L Q F+ + G GGSGKS L + G N
Sbjct: 468 AAGF--NPEKRDIILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATMLAGED---N 522
Query: 533 AEASDI-MQNRPPE-AGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR 590
A ++ I M P E A SLIRL E + A +K +TGGD ++
Sbjct: 523 ATSATIEMLESPRERAALIGFSLIRL---------PDQEKWSGDGAGLKAITGGDAVSVD 573
Query: 591 LNYGNTYSES-PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKL 647
Y N YS PA V N + + RR +++ F IA RD +K+
Sbjct: 574 PKYQNAYSTHIPAVI--LAVNNNPMRFTDRSGGVSRRRVILHFPDQIAPEERDTQLKEKI 631
Query: 648 ETKYTLEAKK 657
++ + ++
Sbjct: 632 ASELAVIVRQ 641
>gi|291281168|ref|YP_003497986.1| Alpha replication protein of prophage CP-933I [Escherichia coli
O55:H7 str. CB9615]
gi|290761041|gb|ADD55002.1| Alpha replication protein of prophage CP-933I [Escherichia coli
O55:H7 str. CB9615]
Length = 796
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 103/250 (41%), Gaps = 31/250 (12%)
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPF---VEGEPSQ-------EFLDL 472
+ + + +G ++G+LD TG K+ ++ + V+GE + +LD
Sbjct: 427 NPARQLIGFRNGVLDTRTGLFSPHDKKHWLRTLCEVDYTQPVDGESLETHAPAFWRWLDR 486
Query: 473 VSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532
+G+ + E D + M L Q F+ + G GGSGKS L + G N
Sbjct: 487 AAGF--NPEKRDIILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATMLAGED---N 541
Query: 533 AEASDI-MQNRPPE-AGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR 590
A ++ I M P E A SLIRL E + A +K +TGGD ++
Sbjct: 542 ATSATIEMLESPRERAALIGFSLIRL---------PDQEKWSGDGAGLKAITGGDAVSVD 592
Query: 591 LNYGNTYSES-PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKL 647
Y N YS PA V N + + RR +++ F IA RD +K+
Sbjct: 593 PKYQNAYSTHIPAVI--LAVNNNPMRFTDRSGGVSRRRVILHFPDQIAPEERDTQLKEKI 650
Query: 648 ETKYTLEAKK 657
++ + ++
Sbjct: 651 ASELAVIVRQ 660
>gi|298674303|ref|YP_003726053.1| phage/plasmid primase [Methanohalobium evestigatum Z-7303]
gi|298287291|gb|ADI73257.1| phage/plasmid primase, P4 family [Methanohalobium evestigatum
Z-7303]
Length = 479
Score = 45.8 bits (107), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 62/291 (21%), Positives = 125/291 (42%), Gaps = 26/291 (8%)
Query: 390 DYRRQNV--EENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPT 447
D+ N+ EE + K QS + I +++ +L +G+L+L+TG+ +
Sbjct: 89 DFDNSNLIKEEVERVKHVIQS----KLRCIDKSQINTDKFYLPVNNGLLELKTGKLKNFS 144
Query: 448 KELYITKSTGTPF-VEGEPSQEFLDLVSGYFESEEVMDYFTR-CVGMALLGGNKAQRFIH 505
E+Y TK + + EF + + FE +E Y + +G L G +F+
Sbjct: 145 PEIYFTKKIPIDYKKDTNVPCEFFNFLKDIFEGDEWQIYVLQEYLGYTLYCGYPFDKFLF 204
Query: 506 IRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIIS 565
+RG+ +G + ++ L+K G+ SD+++ + + L + G
Sbjct: 205 LRGLPENGINVILELMKSLVGDVNYHTLTFSDLLKEKSAVQLEYYDKLFNICG------- 257
Query: 566 ETNENDEINAAKIKQMTGGDCMTA--RLNYGNTY-SESPASFTPFIVPNKHLFVRNPDDA 622
E +N N ++ ++ G + + + YG T+ + + FT +P+ + R D
Sbjct: 258 EMGKNVSPNPEQLGKLVGDNAIKVDEKYEYGFTFKNRTKLLFTGDKLPDVN---RLSADL 314
Query: 623 WWRRYI--VIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGL 671
+ I V P +K I N + +++ + FLKG+ ++ +GL
Sbjct: 315 IKKLIILDVFPKEKRIQNDEIPNVHQIQ---IMCENPTFLKGILSWALEGL 362
>gi|253689633|ref|YP_003018823.1| phage/plasmid primase, P4 family [Pectobacterium carotovorum subsp.
carotovorum PC1]
gi|251756211|gb|ACT14287.1| phage/plasmid primase, P4 family [Pectobacterium carotovorum subsp.
carotovorum PC1]
Length = 775
Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 57/244 (23%), Positives = 100/244 (40%), Gaps = 29/244 (11%)
Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTG----TPFVEGEPSQE-------FLDL 472
S R +G ++G+ D +G+ KP + + + TPF GE + +L
Sbjct: 409 SQRRLIGFRNGVFDTASGE-FKPHRREHWLHTVNDVDYTPFKAGENLADNAPHFWRWLTR 467
Query: 473 VSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532
+G ++ + + M L Q F+ + G GGSGKS L + G+
Sbjct: 468 AAGNHPDKQ--ERILAALFMVLANCYDWQLFLEVTGPGGSGKSILAEITTMLAGDDNTTA 525
Query: 533 AEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLN 592
A + I E+ + S+I G ++++ + E + A IK +TGGD +
Sbjct: 526 ATINTI------ESSRERSSII---GFSLIVLPD-QEKWSGDGAGIKAITGGDAVMVDPK 575
Query: 593 YGNTYSES-PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK--PIANRDASFAQKLET 649
Y + YS PA V N + + RR ++I F + P + RD +K+
Sbjct: 576 YRDAYSTRIPAVI--LAVNNSPMRFSDRSGGVSRRRVIIHFGETIPASERDPKLKEKIRA 633
Query: 650 KYTL 653
+ +
Sbjct: 634 ELAV 637
>gi|21910978|ref|NP_665246.1| putative DNA primase/helicase - phage associated [Streptococcus
pyogenes MGAS315]
gi|28876472|ref|NP_795676.1| putative DNA primase/helicase [Streptococcus pyogenes phage 315.6]
gi|28895335|ref|NP_801685.1| DNA primase (phage associated) [Streptococcus pyogenes SSI-1]
gi|50913381|ref|YP_059353.1| virulence-associated protein E [Streptococcus pyogenes MGAS10394]
gi|21905186|gb|AAM80049.1| putative DNA primase/helicase - phage-associated [Streptococcus
pyogenes MGAS315]
gi|28810581|dbj|BAC63518.1| putative DNA primase (phage associated) [Streptococcus pyogenes
SSI-1]
gi|50902455|gb|AAT86170.1| virulence-associated protein E [Streptococcus pyogenes MGAS10394]
Length = 794
Score = 45.8 bits (107), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 55/237 (23%), Positives = 97/237 (40%), Gaps = 29/237 (12%)
Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540
E +D+ G Q+ + I G GG+GKSTL+N+++ G +MQ
Sbjct: 516 ENIDFIFEWFGYNFYREYTIQKMLFIYGSGGTGKSTLINILREMIGADNYSAVTLQYLMQ 575
Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTA-RLNYG--NTY 597
R + G L R + ++ + A +K +TG D + A R N N Y
Sbjct: 576 ERFAKIG-----LYRKTAN---FDTDAKPQYLADGATLKMLTGEDTIHADRKNKEPINFY 627
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKK 657
+ + SF +P +R+ RR +++ DK + Q+++ KY L+
Sbjct: 628 NYAKLSFAMNELPP----MRDFSGGLKRRMMILEMDKVL-------TQEVKAKYPLDKIM 676
Query: 658 WFLKGVKAYISKGL-------DVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENL 707
+ G+ +GL D I + E+ +G D +++D CD+ E+
Sbjct: 677 SEVPGIFNRAMEGLRKALSKRDFSISASMRSSVEKWEKGNDVVAMFLEDECDLSEDF 733
>gi|269140399|ref|YP_003297100.1| bacteriophage P4 DNA primase [Edwardsiella tarda EIB202]
gi|267986061|gb|ACY85890.1| bacteriophage P4 DNA primase [Edwardsiella tarda EIB202]
Length = 611
Score = 45.4 bits (106), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 92/236 (38%), Gaps = 27/236 (11%)
Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTG---TPFVEGEPSQ-------EFLDLVS 474
+ R +G ++G+LD TG +K ++ TP VEGE + +LD +
Sbjct: 244 ARRLIGFRNGVLDTSTGIFSPHSKTHWLRTLCDVDFTPPVEGETLETHAPNFWRWLDRAA 303
Query: 475 GYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
G + D + M L Q F+ + G GGSGKS L + G +A
Sbjct: 304 G--SRADKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNATSAT 361
Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
+ R A SLIRL E + A +K +TGGD ++ Y
Sbjct: 362 IETLESPR-ERAALIGFSLIRL---------PDQEKWSGDGAGLKAITGGDAVSVDPKYR 411
Query: 595 NTYSES-PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKL 647
+ YS PA V N + + RR +++ F + IA RD K+
Sbjct: 412 DAYSTHIPAVI--LAVNNNPMRFTDRSGGVSRRRVIMHFPEQIAPEERDPKLKDKI 465
>gi|227329979|ref|ZP_03834003.1| hypothetical protein PcarcW_22648 [Pectobacterium carotovorum
subsp. carotovorum WPP14]
Length = 452
Score = 45.4 bits (106), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 57/241 (23%), Positives = 100/241 (41%), Gaps = 29/241 (12%)
Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTG----TPFVEGEPSQE-------FLDLVSG 475
R +G ++G+ D +G+ KP + + + TPF GE + +L +G
Sbjct: 157 RLIGFRNGVFDTVSGE-FKPHRREHWLHTVNDVDYTPFKAGENLADNAPHFWRWLTRAAG 215
Query: 476 YFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535
++ + + M L Q F+ + G GGSGKS L + G+ A
Sbjct: 216 NHPDKQ--ERILAALFMVLANCYDWQLFLEVTGPGGSGKSILAEIAIMLAGDDNATAATI 273
Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595
+ I E+ + S+I G ++++ + E + A IK +TGGD + Y +
Sbjct: 274 NTI------ESSRERSSII---GFSLIVLPD-QEKWSGDGAGIKAITGGDAVMVDPKYRD 323
Query: 596 TYSES-PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK--PIANRDASFAQKLETKYT 652
YS PA V N + + RR ++I F + P + RD +K+ T+
Sbjct: 324 AYSTRIPAVI--LAVNNSPMRFSDRSGGVSRRRVIIHFGETIPASERDPKLKEKIRTELA 381
Query: 653 L 653
+
Sbjct: 382 V 382
>gi|85709926|ref|ZP_01040991.1| primase, putative [Erythrobacter sp. NAP1]
gi|85688636|gb|EAQ28640.1| primase, putative [Erythrobacter sp. NAP1]
Length = 774
Score = 45.4 bits (106), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 78/322 (24%), Positives = 116/322 (36%), Gaps = 59/322 (18%)
Query: 17 GFKLIPLRLGDKR--PQRLGKWEEQLLSSEKIDK------LPAC--------GFGFVCGV 60
G++LIPL DKR R GK E L IDK C G G V
Sbjct: 18 GYQLIPLHRWDKRRMDDRTGKVRE--LGKAPIDKNWTTRAHDNCDAIARLQRGGGNVGVR 75
Query: 61 GEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKT-- 118
D D +++ + D E I+R G P R G+ T
Sbjct: 76 LRDTDLVIDWDPRNDSGQWSMGDYVEF-----ILRNGLDPTGWPTVRTGSGGLHHYLTKL 130
Query: 119 -----TESTQGH--LDILGCGQYFVA-YNIHPKTKKEYTWTTPP-HRFKVEDTPLLSEED 169
E +G+ ++ G+ VA +IHP T + Y W P F D P
Sbjct: 131 ADLRIVERPEGYPSIEFKTVGRQVVAPGSIHP-TGELYRWEGEPVGMFGAPDAP------ 183
Query: 170 VEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEW 229
+ L + + + P S +PS+ Y+ E+ + L E + H +W
Sbjct: 184 -DRLLESARRHSKP------STVPSRCGV------YSPEELASMLDALDPEDFE-EHADW 229
Query: 230 IPVVMAVHHETRGSSKGKEIARRWSKQGSTYDE--ENFNYKWDTFDFEEIGDTAKKRSTF 287
+ ++MA HH T G G+E WS Y + E +WD+ + G +
Sbjct: 230 LEIMMACHHATAGD--GREEFIEWSTSDPAYADHAEEIASRWDSLSIDRSGGITYRTLHK 287
Query: 288 TSLFYHHGKLIPKGLLASRFSD 309
+ G +IP+ A F D
Sbjct: 288 ALIEAGRGDVIPRPDPADDFDD 309
Score = 40.8 bits (94), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 81/198 (40%), Gaps = 24/198 (12%)
Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549
+G + +A + +++ GV GKST + K G Q+V ++ I
Sbjct: 484 MGYLMTADTRAHKIMNLIGVKRGGKSTAAQVCKDLVGRQHVHSSTLEGI---------AG 534
Query: 550 NPSLIRLMGSRIVIISETNENDEINAAK-------IKQMTGGDCMTA-RLNYGNTYSESP 601
+ L + R++++ + + ++N+AK IK TGGD + R N + P
Sbjct: 535 DFGLEPCVDKRLLVVPDAH---DVNSAKRAIALERIKMFTGGDEVDVNRKNISVIQATLP 591
Query: 602 ASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR-DASFAQKLETKYTLEAKKWFL 660
+V NK + A R I+I F+ R D A KL + + A W L
Sbjct: 592 TRL--MVVANKLPKFIDESGALAARAIIIKFETSFQGREDHELAAKLRAEMSGIA-NWAL 648
Query: 661 KGVKAYISKGLDVDIPEV 678
+G+ S GL I E
Sbjct: 649 EGLDRLRSNGLAFTIGEA 666
>gi|73852933|ref|YP_294217.1| putative nucleic acid independent nucleoside triphosphatase
[Emiliania huxleyi virus 86]
gi|72415649|emb|CAI65886.1| putative nucleic acid independent nucleoside triphosphatase
[Emiliania huxleyi virus 86]
Length = 675
Score = 45.1 bits (105), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 67/148 (45%), Gaps = 13/148 (8%)
Query: 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSR 560
Q + +GV GSGKS+++NLI F + EA I+ + + SL + +
Sbjct: 394 QLLLFFKGVAGSGKSSVLNLISECF------DPEAIGILNSNCQDQF----SLEHIADAH 443
Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHL-FVRNP 619
IVI E + N A ++Q G+ +T +Y + + PF++ L ++
Sbjct: 444 IVITYEAKRDFRFNQATLQQCVSGEGVTIVRKGEKSYDKKWTA--PFVMAGNELPGWKDA 501
Query: 620 DDAWWRRYIVIPFDKPIANRDASFAQKL 647
+ RR +++PF+ + +D ++
Sbjct: 502 AGSMARRLVLVPFNHRVIEQDEELGDRM 529
>gi|169826081|ref|YP_001696239.1| hypothetical protein Bsph_0484 [Lysinibacillus sphaericus C3-41]
gi|168990569|gb|ACA38109.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41]
Length = 656
Score = 45.1 bits (105), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 63/273 (23%), Positives = 110/273 (40%), Gaps = 51/273 (18%)
Query: 508 GVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISET 567
G +GKS ++ L++Y G D N + + L L G R+ +E
Sbjct: 405 GQKDTGKSVILKLLEYIIG---------EDNFSNISIDQFNNSVYLAELYGKRLNSCAEI 455
Query: 568 NENDEINAAKIKQMTGGDCMTARLNYGNT---YSESPASFTPFIVPNKHLFVRNPD--DA 622
+E + +K+++G D +TAR Y + ++S F +PN + N D A
Sbjct: 456 SELNLKRLDILKKLSGNDYVTARPMYSDPIKFINQSVLLFAGNNLPN----IENLDSSSA 511
Query: 623 WWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEAKKWFLKGV----------------- 663
+ R ++ PF+ PI ++D KL + A W +KG+
Sbjct: 512 FKERLLLFPFNNPIPKEHQDNELIDKLIAEIDYIA-HWSIKGIHRLLNNNFQFTTSFEIE 570
Query: 664 ---KAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSE 720
K Y+S L+ + C + + D YQA+I C + + + KS+ +
Sbjct: 571 DTFKPYLSNSLEEFLLSECAYQTKYQIHTDDLYQAYIVYCENYSFKIISK-----KSFIQ 625
Query: 721 YREQELNYDRKRISTRTVTLNLKQKGFIG-GIK 752
+++ N +R R + GFIG G+K
Sbjct: 626 ILKKQSNLSFRRFRMRGT----NKYGFIGIGLK 654
>gi|283481673|emb|CAZ69789.1| putative nucleic acid independent nucleoside triphosphatase
[Emiliania huxleyi virus 99B1]
Length = 675
Score = 45.1 bits (105), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 67/148 (45%), Gaps = 13/148 (8%)
Query: 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSR 560
Q + +GV GSGKS+++NLI F + EA I+ + + SL + +
Sbjct: 394 QLLLFFKGVAGSGKSSVLNLISECF------DPEAIGILNSNCQDQF----SLEHIADAH 443
Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHL-FVRNP 619
IVI E + N A ++Q G+ +T +Y + + PF++ L ++
Sbjct: 444 IVITYEAKRDFRFNQATLQQCVSGEGVTIVRKGEKSYDKKWTA--PFVMAGNELPGWKDA 501
Query: 620 DDAWWRRYIVIPFDKPIANRDASFAQKL 647
+ RR +++PF+ + +D ++
Sbjct: 502 AGSMARRLVLVPFNHRVIEQDEELGDRM 529
>gi|315296958|gb|EFU56238.1| nucleoside triphosphatase, D5 family [Escherichia coli MS 16-3]
Length = 687
Score = 45.1 bits (105), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 100/261 (38%), Gaps = 29/261 (11%)
Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTG----TPFVEGEPSQ-------EFLDLV 473
S R +G ++G+LD + G P + ++ TP V+GE + +LD
Sbjct: 320 SRRLIGFRNGVLDTQNG-TFHPHSPSHWMRTLCDVDFTPPVDGETLETHAPAFWRWLDRA 378
Query: 474 SGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
+G E D + M L Q F+ + G GGSGKS + + G +A
Sbjct: 379 AG--GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSA 436
Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593
+ R A SLIRL E + A +K +TGGD ++ Y
Sbjct: 437 TIETLESPR-ERAALTGFSLIRL---------PDQEKWSGDGAGLKAITGGDAVSVDPKY 486
Query: 594 GNTYSES-PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETK 650
+ YS PA V N + + RR ++I F + IA RD K+ +
Sbjct: 487 RDAYSTHIPAVI--LAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITRE 544
Query: 651 YTLEAKKWFLKGVKAYISKGL 671
+ + K +++ L
Sbjct: 545 LAVIVRHLMQKFSDPMLARSL 565
>gi|167462196|ref|ZP_02327285.1| phage / plasmid primase, P4 family protein [Paenibacillus larvae
subsp. larvae BRL-230010]
Length = 582
Score = 45.1 bits (105), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 95/408 (23%), Positives = 160/408 (39%), Gaps = 85/408 (20%)
Query: 317 SIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDN 376
S YK+G FL+ K Y + +N+V + N L K+ V+ ++ ++
Sbjct: 213 SFYKRGEFLHHEFAK--YIRQENHV-----------MKLNNVLHVYKDGVYSGKQQDVES 259
Query: 377 NKNSKSPRFWF-----NTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGE 431
P+ T Y VE+ + A +LE G I+++ D LD S
Sbjct: 260 AMIQHLPQLTAAKRKETTAYLELIVEKMNSAPVNLIALENG-IYNLEDDTLDEFSP---- 314
Query: 432 QDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVG 491
D+ K+ T + P V E + + LD +S + E+ +G
Sbjct: 315 -----DIIIKNKIPVTYD---------PDVYDEATDKVLDKISCH--DAELRALLEEMIG 358
Query: 492 MALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANP 551
LL N+ + + G G +GKSTL++++K G PE N
Sbjct: 359 YLLLRRNELGKCFILTGSGSNGKSTLLDMLKNFLG-----------------PE----NY 397
Query: 552 SLIRL--MGSRI----VIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFT 605
S + L +G R V N D+I++ Q + + +L G T +
Sbjct: 398 SSLSLDEIGHRFKTAEVFGKLANLGDDISS----QYIDNNAVFKKLVTGETVNVERKGKD 453
Query: 606 PFIVPN--KHLF-------VRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETK-YTLEA 655
PF N K +F + + D RR I+IPF+ ++ DA F ++ K T A
Sbjct: 454 PFEFNNYAKLIFSANQLPRINDTTDGLMRRLIIIPFNAKFSSADADFDPFIKDKLLTDNA 513
Query: 656 KKWF----LKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD 699
K+ LKG+K +S +P++ + E + + A+ID+
Sbjct: 514 MKYLLQIALKGLKRVLSNK-RFTMPDIIKRELAEYEKMNNPVMAFIDE 560
>gi|323182012|gb|EFZ67423.1| phage/plasmid primase, P4 family, C-terminal domain protein
[Escherichia coli 1357]
Length = 777
Score = 45.1 bits (105), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 100/261 (38%), Gaps = 29/261 (11%)
Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTG----TPFVEGEPSQ-------EFLDLV 473
S R +G ++G+LD + G P + ++ TP V+GE + +LD
Sbjct: 410 SRRLIGFRNGVLDTQNG-TFHPHSPSHWMRTLCDVDFTPPVDGETLETHAPAFWRWLDRA 468
Query: 474 SGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
+G E D + M L Q F+ + G GGSGKS + + G +A
Sbjct: 469 AG--GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSA 526
Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593
+ R A SLIRL E + A +K +TGGD ++ Y
Sbjct: 527 TIETLESPR-ERAALTGFSLIRL---------PDQEKWSGDGAGLKAITGGDAVSVDPKY 576
Query: 594 GNTYSES-PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETK 650
+ YS PA V N + + RR ++I F + IA RD K+ +
Sbjct: 577 RDAYSTHIPAVI--LAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITRE 634
Query: 651 YTLEAKKWFLKGVKAYISKGL 671
+ + K +++ L
Sbjct: 635 LAVIVRHLMQKFSDPMLARSL 655
>gi|170679915|ref|YP_001745974.1| D5 family nucleoside triphosphatase [Escherichia coli SMS-3-5]
gi|170517633|gb|ACB15811.1| nucleoside triphosphatase, D5 family [Escherichia coli SMS-3-5]
Length = 777
Score = 45.1 bits (105), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 100/261 (38%), Gaps = 29/261 (11%)
Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTG----TPFVEGEPSQ-------EFLDLV 473
S R +G ++G+LD + G P + ++ TP V+GE + +LD
Sbjct: 410 SRRLIGFRNGVLDTQNG-TFHPHSPSHWMRTLCDVDFTPPVDGETLETHAPAFWRWLDRA 468
Query: 474 SGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
+G E D + M L Q F+ + G GGSGKS + + G +A
Sbjct: 469 AG--GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSA 526
Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593
+ R A SLIRL E + A +K +TGGD ++ Y
Sbjct: 527 TIETLESPR-ERAALTGFSLIRL---------PDQEKWSGDGAGLKAITGGDAVSVDPKY 576
Query: 594 GNTYSES-PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETK 650
+ YS PA V N + + RR ++I F + IA RD K+ +
Sbjct: 577 RDAYSTHIPAVI--LAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITRE 634
Query: 651 YTLEAKKWFLKGVKAYISKGL 671
+ + K +++ L
Sbjct: 635 LAVIVRHLMQKFSDPMLARSL 655
>gi|331671414|ref|ZP_08372212.1| putative P4-specific DNA primase [Escherichia coli TA280]
gi|331071259|gb|EGI42616.1| putative P4-specific DNA primase [Escherichia coli TA280]
Length = 777
Score = 45.1 bits (105), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 100/261 (38%), Gaps = 29/261 (11%)
Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTG----TPFVEGEPSQ-------EFLDLV 473
S R +G ++G+LD + G P + ++ TP V+GE + +LD
Sbjct: 410 SRRLIGFRNGVLDTQNG-TFHPHSPSHWMRTLCDVDFTPPVDGETLETHAPAFWRWLDRA 468
Query: 474 SGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
+G E D + M L Q F+ + G GGSGKS + + G +A
Sbjct: 469 AG--GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSA 526
Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593
+ R A SLIRL E + A +K +TGGD ++ Y
Sbjct: 527 TIETLESPR-ERAALTGFSLIRL---------PDQEKWSGDGAGLKAITGGDAVSVDPKY 576
Query: 594 GNTYSES-PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETK 650
+ YS PA V N + + RR ++I F + IA RD K+ +
Sbjct: 577 RDAYSTHIPAVI--LAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITHE 634
Query: 651 YTLEAKKWFLKGVKAYISKGL 671
+ + K +++ L
Sbjct: 635 LAVIVRHLMQKFSDPMLARSL 655
>gi|195982544|ref|YP_002122374.1| V13 [Sputnik virophage]
gi|226732444|sp|B4YNF3|V13_SPTNK RecName: Full=Putative helicase V13
gi|193245553|gb|ACF16997.1| V13 [Sputnik virophage]
Length = 779
Score = 44.7 bits (104), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 58/125 (46%), Gaps = 11/125 (8%)
Query: 486 FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP-- 543
F + AL G K ++ G +GKS L+ +++Y FG+ Y+ +I N
Sbjct: 482 FITSLACALAGEIKLKKIYFCPGKSNAGKSYLIKMLQYCFGD-YIGTINGENISYNSKDS 540
Query: 544 -PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM-TGGDCMTARLNYGNTYSESP 601
EA K + + L +RIV+ SE + I+ IK+ + GD + R + ES
Sbjct: 541 RDEAAKYRWAYL-LANTRIVMSSEISMKKSIDGNMIKKFASAGDKIVGR-----KHCESE 594
Query: 602 ASFTP 606
SFTP
Sbjct: 595 ISFTP 599
>gi|324115992|gb|EGC09918.1| poxvirus D5 protein [Escherichia coli E1167]
Length = 777
Score = 44.7 bits (104), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 100/261 (38%), Gaps = 29/261 (11%)
Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTG----TPFVEGEPSQ-------EFLDLV 473
S R +G ++G+LD + G P + ++ TP V+GE + +LD
Sbjct: 410 SRRLIGFRNGVLDTQNG-TFHPHSPSHWMRTLCDVDFTPPVDGETLETHAPAFWRWLDRA 468
Query: 474 SGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
+G E D + M L Q F+ + G GGSGKS + + G +A
Sbjct: 469 AG--GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSA 526
Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593
+ R A SLIRL E + A +K +TGGD ++ Y
Sbjct: 527 TIETLESPR-ERAALTGFSLIRL---------PDQEKWSGDGAGLKAITGGDAVSVDPKY 576
Query: 594 GNTYSES-PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETK 650
+ YS PA V N + + RR ++I F + IA RD K+ +
Sbjct: 577 RDAYSTHIPAVI--LAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITRE 634
Query: 651 YTLEAKKWFLKGVKAYISKGL 671
+ + K +++ L
Sbjct: 635 LAVIVRHLMQKFSDPMLARSL 655
>gi|304398649|ref|ZP_07380521.1| P4 alpha zinc-binding domain protein [Pantoea sp. aB]
gi|304353860|gb|EFM18235.1| P4 alpha zinc-binding domain protein [Pantoea sp. aB]
Length = 771
Score = 44.7 bits (104), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 57/283 (20%), Positives = 104/283 (36%), Gaps = 39/283 (13%)
Query: 392 RRQNVEENSKAKSTAQSLEAGSIFS----ITSDLLDSSSRFLGEQDGILDLETGQKVKPT 447
RR+ K ++ + GS+ + + + S R +G ++G+ D TG
Sbjct: 371 RREIAALFQKVRAPFSAAGIGSVLDTLKLMVPQMGEPSRRLIGFRNGVYDTTTGTFGPHR 430
Query: 448 KELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVG--------------MA 493
+E ++ + P + D ++ + TR G M
Sbjct: 431 RENWLRTVNSVDYSAPRPGENLADHAPYFYR------WLTRAAGHNHDKQERILAALFMV 484
Query: 494 LLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL 553
L Q F+ + G GGSGKS + ++ G +A + +R
Sbjct: 485 LANRYDWQMFLEVTGPGGSGKSVMASIATLLAGKDNTTSATIDTLESSR---------ER 535
Query: 554 IRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES-PASFTPFIVPNK 612
++G ++I+ + E + A IK +TGGD + Y + YS PA V N
Sbjct: 536 ASVVGFSLIILPD-QEKWSGDGAGIKAITGGDAVAIDPKYRDAYSTHIPAVI--LAVNNN 592
Query: 613 HLFVRNPDDAWWRRYIVIPFDK--PIANRDASFAQKLETKYTL 653
+ + RR +++ F + P RD K+ T+ +
Sbjct: 593 PMRFSDRSGGVSRRRVILTFPEVIPAKERDPQLLDKVSTELAV 635
>gi|9627512|ref|NP_042036.1| DNA primase [Enterobacteria phage P4]
gi|130905|sp|P10277|PRIM_BPP4 RecName: Full=Putative P4-specific DNA primase
gi|75895|pir||RPBPP4 DNA primase - satellite phage P4
gi|15152|emb|CAA29111.1| unnamed protein product [Enterobacteria phage P4]
gi|15158|emb|CAA35898.1| unnamed protein product [Enterobacteria phage P4]
Length = 777
Score = 44.7 bits (104), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 100/261 (38%), Gaps = 29/261 (11%)
Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTG----TPFVEGEPSQ-------EFLDLV 473
S R +G ++G+LD + G P + ++ TP V+GE + +LD
Sbjct: 410 SRRLIGFRNGVLDTQNG-TFHPHSPSHWMRTLCDVDFTPPVDGETLETHAPAFWRWLDRA 468
Query: 474 SGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
+G E D + M L Q F+ + G GGSGKS + + G +A
Sbjct: 469 AG--GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSA 526
Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593
+ R A SLIRL E + A +K +TGGD ++ Y
Sbjct: 527 TIETLESPR-ERAALTGFSLIRL---------PDQEKWSGDGAGLKAITGGDAVSVDPKY 576
Query: 594 GNTYSES-PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETK 650
+ YS PA V N + + RR ++I F + IA RD K+ +
Sbjct: 577 RDAYSTHIPAVI--LAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITRE 634
Query: 651 YTLEAKKWFLKGVKAYISKGL 671
+ + K +++ L
Sbjct: 635 LAVIVRHLMQKFSDPMLARSL 655
>gi|168464122|ref|ZP_02698039.1| bacteriophage P4 DNA primase [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
gi|195633563|gb|EDX51977.1| bacteriophage P4 DNA primase [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
Length = 777
Score = 44.7 bits (104), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 98/250 (39%), Gaps = 27/250 (10%)
Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTG---TPFVEGEPSQ-------EFLDLVS 474
+ R +G ++G+LD TG K ++ TP VEGE + +LD +
Sbjct: 410 ARRQIGFRNGVLDTATGTFSPHHKSHWLRTLCDVDFTPPVEGEMLETHAPNFWRWLDRAA 469
Query: 475 GYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
G ++ + D + M L Q F+ + G GGSGKS L + G +A
Sbjct: 470 G--KNPQKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNATSAT 527
Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
+ R A SLIRL E + A +K +TGGD ++ Y
Sbjct: 528 IETLESPR-ERAALIGFSLIRL---------PDQEKWSGDGAGLKAITGGDAVSVDPKYK 577
Query: 595 NTYSES-PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKY 651
+ YS PA V N + + RR +++ F + IA RD K+ +
Sbjct: 578 DAYSTHIPAVI--LAVNNNPMRFTDRSGGVSRRRVILHFPEQIAPEERDPQLKNKIAREL 635
Query: 652 TLEAKKWFLK 661
+ ++ K
Sbjct: 636 AVIVRQLMQK 645
>gi|300905045|ref|ZP_07122855.1| nucleoside triphosphatase, D5 family [Escherichia coli MS 84-1]
gi|301305722|ref|ZP_07211809.1| nucleoside triphosphatase, D5 family [Escherichia coli MS 124-1]
gi|300403032|gb|EFJ86570.1| nucleoside triphosphatase, D5 family [Escherichia coli MS 84-1]
gi|300838976|gb|EFK66736.1| nucleoside triphosphatase, D5 family [Escherichia coli MS 124-1]
gi|315252798|gb|EFU32766.1| nucleoside triphosphatase, D5 family [Escherichia coli MS 85-1]
Length = 777
Score = 44.7 bits (104), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 100/261 (38%), Gaps = 29/261 (11%)
Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTG----TPFVEGEPSQ-------EFLDLV 473
S R +G ++G+LD + G P + ++ TP V+GE + +LD
Sbjct: 410 SRRLIGFRNGVLDTQNG-TFHPHSPSHWMRTLCDVDFTPPVDGETLETHAPAFWRWLDRA 468
Query: 474 SGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
+G E D + M L Q F+ + G GGSGKS + + G +A
Sbjct: 469 AG--GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSA 526
Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593
+ R A SLIRL E + A +K +TGGD ++ Y
Sbjct: 527 TIETLESPR-ERAALTGFSLIRL---------PDQEKWSGDGAGLKAITGGDAVSVDPKY 576
Query: 594 GNTYSES-PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETK 650
+ YS PA V N + + RR ++I F + IA RD K+ +
Sbjct: 577 RDAYSTHIPAVI--LAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITRE 634
Query: 651 YTLEAKKWFLKGVKAYISKGL 671
+ + K +++ L
Sbjct: 635 LAVIVRHLMQKFSDPMLARSL 655
>gi|218547850|ref|YP_002381641.1| phage DNA primase [Escherichia fergusonii ATCC 35469]
gi|218355391|emb|CAQ88000.1| phage DNA primase [Escherichia fergusonii ATCC 35469]
Length = 777
Score = 44.7 bits (104), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 100/261 (38%), Gaps = 29/261 (11%)
Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTG----TPFVEGEPSQ-------EFLDLV 473
S R +G ++G+LD + G P + ++ TP V+GE + +LD
Sbjct: 410 SRRLIGFRNGVLDTQNG-TFHPHSPSHWMRTLCDVDFTPPVDGETLETHAPAFWRWLDRA 468
Query: 474 SGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
+G E D + M L Q F+ + G GGSGKS + + G +A
Sbjct: 469 AG--GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSA 526
Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593
+ R A SLIRL E + A +K +TGGD ++ Y
Sbjct: 527 TIETLESPR-ERAALTGFSLIRL---------PDQEKWSGDGAGLKAITGGDAVSVDPKY 576
Query: 594 GNTYSES-PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETK 650
+ YS PA V N + + RR ++I F + IA RD K+ +
Sbjct: 577 RDAYSTHIPAVI--LAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITRE 634
Query: 651 YTLEAKKWFLKGVKAYISKGL 671
+ + K +++ L
Sbjct: 635 LAVIVRHLMQKFSDPMLARSL 655
>gi|153213459|ref|ZP_01948770.1| integrase [Vibrio cholerae 1587]
gi|124115923|gb|EAY34743.1| integrase [Vibrio cholerae 1587]
Length = 792
Score = 44.7 bits (104), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 14/100 (14%)
Query: 204 QYTNREITAFLSCFGEEFYNGS---HDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTY 260
+YT R++ L +F N +DEW+ + A+H + +KG E+A RWS++GS Y
Sbjct: 233 KYTPRQLWKML-----DFINPDELEYDEWLMCLQAIHSQYP-DAKGFELADRWSQRGSRY 286
Query: 261 DEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPK 300
+ + +W FD D+ + R F G PK
Sbjct: 287 EPNEVSIRWGAFD-----DSGEVRVGTLIYFAKRGGFNPK 321
>gi|46202140|ref|ZP_00053695.2| COG1197: Transcription-repair coupling factor (superfamily II
helicase) [Magnetospirillum magnetotacticum MS-1]
Length = 1185
Score = 44.7 bits (104), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 69/280 (24%), Positives = 112/280 (40%), Gaps = 38/280 (13%)
Query: 17 GFKLIPLRLGDKRPQRLGKW--EEQLLSSEKIDK--LPACGFGFVCGVGEQPLYAFDIDS 72
G+ +IP+ G KRP + G W + L+ +++ + + C + GV A DID
Sbjct: 21 GYYVIPVDPGTKRPDQRG-WPIHARNLTVKQVAEWSIDPCTAKYGIGVLALATPAIDIDV 79
Query: 73 KDEKTANTFKDTFEILHGTPIVRIGQKPKIL--------IPFRMNKEGIKKKKTTESTQG 124
+ + A+ E + G VRIG PK L +P+ E T + +G
Sbjct: 80 RHPEAADEIDAAAERILGPAPVRIGAWPKRLRVYSGPEDMPYTSVGECAFPGDDT-AAKG 138
Query: 125 H----LDIL-GCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQE 179
+ +++L G G+ FVA IHP T K Y W P L+ E + F E
Sbjct: 139 YKWHNVEVLSGGGKQFVAAAIHPGTGKPYQW--PSGDLLAWPHDRLTAITAEMVEAFLAE 196
Query: 180 ITVPLV------KDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHD----EW 229
+ V L K +S I T+ +R+ + LS E + +D +W
Sbjct: 197 VRVILARHGAVSKGGRSAI-----TSGGDRRTSVTGNNVGLSRVAEALAHVPNDADYHDW 251
Query: 230 IPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKW 269
+ A+ G ++ R WS++ YD + W
Sbjct: 252 VRYAYALKGAF--GEDGFDLWRDWSERSDKYDADYTETTW 289
>gi|325578236|ref|ZP_08148371.1| bacteriophage P4 DNA primase [Haemophilus parainfluenzae ATCC
33392]
gi|325159972|gb|EGC72101.1| bacteriophage P4 DNA primase [Haemophilus parainfluenzae ATCC
33392]
Length = 589
Score = 44.7 bits (104), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 83/200 (41%), Gaps = 20/200 (10%)
Query: 451 YITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVG 510
Y+ + TP+ + ++L+ VSG E+++ + + L N Q F + G G
Sbjct: 268 YLNSAQNTPYFD-----KWLEFVSGGKENKK--NAILAALYAVLTNRNDWQLFFEVTGDG 320
Query: 511 GSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN 570
GSGKS N+ G Q + D+ + R E+ +G ++I E +
Sbjct: 321 GSGKSVFANIATLLAGAQNTESGRLVDLDEPRGRES---------FVGKTLLICPEQSRY 371
Query: 571 DEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVI 630
+ +K +TGGD + + + ++ S IV N+ RR ++
Sbjct: 372 GG-DGGGLKSITGGDPVNIDPKHRTKF-KAVISAVVLIVNNEATRFTERSGGIERRRVIF 429
Query: 631 PFDK--PIANRDASFAQKLE 648
FDK P RD +F K+E
Sbjct: 430 HFDKVVPENERDPNFMDKIE 449
>gi|217979240|ref|YP_002363387.1| hypothetical protein Msil_3116 [Methylocella silvestris BL2]
gi|217504616|gb|ACK52025.1| conserved hypothetical protein [Methylocella silvestris BL2]
Length = 841
Score = 44.7 bits (104), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 49/226 (21%), Positives = 89/226 (39%), Gaps = 15/226 (6%)
Query: 51 ACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNK 110
G G + G+ L A DID+ D + + + G R+G+ PK L +R +
Sbjct: 105 GAGVGLMTGLVSSVL-AVDIDTLDHGLSARAAELMREMLGPARPRVGRAPKALFLYRCAQ 163
Query: 111 EGIKKKKTTESTQGHLDILGCG---QYFVAYNIHPKTKKEYTWT--TPPHRFKVEDTPLL 165
K + +G +++ + V HPKT K Y+W PP + E TP
Sbjct: 164 PVPFLKVKFDGPEGKRELVELSTDRRQIVMRGTHPKTGKPYSWPEGLPPFKELTEVTP-- 221
Query: 166 SEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNRE---ITAFLSCFGEEFY 222
E VE F + +P + + + + + + + ++T A S E
Sbjct: 222 --EQVEAFFLELSHV-MPNAEFRGRKLSAGSGSGGDQTKFTGSAEAVARAVRSLPNTEAL 278
Query: 223 NGSHDEWIPVVMAVHHETRGSSKGKE-IARRWSKQGSTYDEENFNY 267
+ D W+ ++ A+ E +A+ WS++ D + +Y
Sbjct: 279 YPTRDSWLDMLYAIKAALPDDPGAAEALAQEWSEKYDGPDGNDPDY 324
>gi|172054865|ref|YP_001806192.1| hypothetical protein cce_4778 [Cyanothece sp. ATCC 51142]
gi|171701146|gb|ACB54126.1| hypothetical protein cce_4778 [Cyanothece sp. ATCC 51142]
Length = 704
Score = 44.3 bits (103), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 52/235 (22%), Positives = 96/235 (40%), Gaps = 24/235 (10%)
Query: 414 IFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTG---TPFVEGEP-SQEF 469
I +T ++ + ++G+LD+ET + Y T S P GEP Q
Sbjct: 428 ILLVTEMACNAHKGLIPFRNGVLDIETRDLWPHSPTNYFTWSLPYDYNPLATGEPIKQWL 487
Query: 470 LDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529
L+++ G E +++ + + G Q+F+ + G GG+GKSTL+ L G
Sbjct: 488 LEMMQG---DESLVELVRAYLHGVVTGRADWQKFLELIGPGGTGKSTLIRLAIALVGFS- 543
Query: 530 VINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTA 589
N + + + + AN + R+V++++ E + +K +TG D
Sbjct: 544 --NCHVTTLKRLETSKFETAN-----IKDKRLVLVTDA-ERYTGDVTTLKALTGEDS--- 592
Query: 590 RLNYGNTYSESPASFTP----FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD 640
L Y ++ F P I N+H+ + RR I + + I+ +
Sbjct: 593 -LPYEKKMQQATGGFKPDCLVIIAGNEHIKTSDYTSGLQRRRITVGMRRKISEEN 646
>gi|255693187|ref|ZP_05416862.1| putative primase [Bacteroides finegoldii DSM 17565]
gi|260621080|gb|EEX43951.1| putative primase [Bacteroides finegoldii DSM 17565]
Length = 400
Score = 44.3 bits (103), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 51/261 (19%), Positives = 110/261 (42%), Gaps = 12/261 (4%)
Query: 432 QDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVG 491
Q+G +L+TG+ + Y P+ Q F+ + ++ +G
Sbjct: 134 QNGTFNLKTGRLEQHLYLDYFRYVLPYPYNLNATCQMFMKYLDRVLPDKDAQKVLAEYIG 193
Query: 492 MALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANP 551
+ K ++ + + G G +GKS +++++ G + + + SD M + +AN
Sbjct: 194 W-IFTPLKLEKVLFLYGSGKNGKSVFVDIVEALLGKENISHESLSD-MCGENGDRSRAN- 250
Query: 552 SLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPN 611
L G + S+ N + K++ G+ ++ R Y + + + + F + N
Sbjct: 251 ----LSGKLLNTCSDVAPN-AFSGDIFKRIASGEPISTRQLYKDVATLTDYAKMLFCL-N 304
Query: 612 KHLFVRNPDDAWWRRYIVIPF--DKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISK 669
+ + + ++RR++++PF P + D A+K+ + W L+G K I++
Sbjct: 305 ELPRTNDKSNGYFRRFLIVPFKVQIPKSEVDPKLAEKIVSTELPGIMNWVLEGRKRLITQ 364
Query: 670 GLDVDIPEVCLKAKEEERQGT 690
+ +C K EE R G+
Sbjct: 365 SGFTE-SSLCQKQLEEYRYGS 384
>gi|229551169|ref|ZP_04439894.1| DNA primase [Lactobacillus rhamnosus LMS2-1]
gi|229315461|gb|EEN81434.1| DNA primase [Lactobacillus rhamnosus LMS2-1]
Length = 463
Score = 44.3 bits (103), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 67/283 (23%), Positives = 123/283 (43%), Gaps = 38/283 (13%)
Query: 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSR 560
Q I ++G G +GK+T + +K + V N D+ A K N R GS+
Sbjct: 202 QALIILQGTGQNGKTTFIEFVKQILDKRNVSNVALQDL-------ANKDN----RFTGSQ 250
Query: 561 IV-----IISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV-PNKHL 614
+ + ++ +++ +IK +TG D + A + +S +F I NK
Sbjct: 251 LYQKEVNMFADLDDSFLKTTGQIKALTGDDTIFAEFKGKDGFSF--MNFAKLIFSANKLP 308
Query: 615 FVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWF----LKGVKAYISKG 670
+ + RR V+PF K I D +F ++ + + F L+ K I +
Sbjct: 309 KFSDFTSGFIRRLYVVPFPKKI---DNNFKKEFDLNQIYDEIPAFSYQCLRAFKRAIDRD 365
Query: 671 LDVDIPEVCLKAKEEERQGTDTYQAWIDDCC--DIGENLWEESHSLAKSYSEYREQELNY 728
P + + AKE+ + +D +I+D C ++ N + S ++ K+Y +Y +E
Sbjct: 366 SLSKSPSM-IAAKEQWLKDSDNIARFIEDRCRIELDTNGGDSSRNIYKAYQDYCWEE--- 421
Query: 729 DRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771
+ K S T L+ + GI R+K+ ++ + RI + L L
Sbjct: 422 NIKPFSQPEFTRRLEAQ----GIPRKKV--QFNNTRIWRYLHL 458
>gi|320656999|gb|EFX24834.1| alpha replication protein of prophage CP-933I [Escherichia coli
O55:H7 str. 3256-97 TW 07815]
Length = 777
Score = 44.3 bits (103), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 102/250 (40%), Gaps = 31/250 (12%)
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPF---VEGEPSQ-------EFLDL 472
+ + + +G ++G+ D TG K+ ++ + V+GE + +LD
Sbjct: 408 NPARQLIGFRNGVFDTRTGLFSPHDKKHWLRTLCEVDYTQPVDGESLETHAPAFWRWLDR 467
Query: 473 VSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532
+G+ + E D + M L Q F+ + G GGSGKS L + G N
Sbjct: 468 AAGF--NPEKRDIILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATMLAGED---N 522
Query: 533 AEASDI-MQNRPPE-AGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR 590
A ++ I M P E A SLIRL E + A +K +TGGD ++
Sbjct: 523 ATSATIEMLESPRERAALIGFSLIRL---------PDQEKWSGDGAGLKAITGGDAVSVD 573
Query: 591 LNYGNTYSES-PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKL 647
Y N YS PA V N + + RR +++ F IA RD +K+
Sbjct: 574 PKYQNAYSTHIPAVI--LAVNNNPMRFTDRSGGVSRRRVILHFPDQIAPEERDTQLKEKI 631
Query: 648 ETKYTLEAKK 657
++ + ++
Sbjct: 632 ASELAVIVRQ 641
>gi|323144216|ref|ZP_08078849.1| phage/plasmid primase, P4 family, C-terminal domain [Succinatimonas
hippei YIT 12066]
gi|322416008|gb|EFY06709.1| phage/plasmid primase, P4 family, C-terminal domain [Succinatimonas
hippei YIT 12066]
Length = 633
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 47/232 (20%), Positives = 97/232 (41%), Gaps = 15/232 (6%)
Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDY- 485
R++G ++GI DLE + + + IT ++ + +S ++ +
Sbjct: 301 RYIGFKNGIYDLEERKLISFDPNIVITNPINHNYISDAYDADTDKFLSNITCGDKALRAN 360
Query: 486 FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545
+G L N Q+F + G G +GKS I+ G + +S+ +Q
Sbjct: 361 LEELLGYCLYRENSLQKFFLLYGSGSNGKSMFCTFIRAVLGEENC----SSESLQRLGER 416
Query: 546 AGKANPSLIRLMGSRIVIISETNENDEI-NAAKIKQMTGGDCMTARLNYGNTYSESPASF 604
G ++ + +++ I + N + I + A +K ++ G +++S +P
Sbjct: 417 FGSSS------IYNKLANICDDNSSMHIKDPAMLKILSSGGNYQTEFKGKDSFSYTPFCK 470
Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLE 654
F + NK + + A RR ++IPF++ I +D + +KL +E
Sbjct: 471 LIFCM-NKLPKINDNGQAVQRRLVIIPFNRSIPENEQDTALKKKLTKDSAIE 521
>gi|291335467|gb|ADD95079.1| hypothetical protein [uncultured phage MedDCM-OCT-S04-C348]
Length = 391
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 68/158 (43%), Gaps = 15/158 (9%)
Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540
+V+ + R V L+G + Q+F+ I G G SGKST NL G++ + + +
Sbjct: 42 QVLRAWLRAV---LMGASDIQKFVEIVGPGKSGKSTYANLCNALVGDENTTISTLEHLEK 98
Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600
NR A L ++++ ++ E + + +K +TG D + Y +
Sbjct: 99 NRFETAN--------LYKKKLLLFNDV-ERYGGSVSILKALTGRDLLRNEHKY-QAGKQK 148
Query: 601 PASF--TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI 636
P F I N+ + +P RR + IPF+ P
Sbjct: 149 PFKFDGLCMITANEPIQTTDPTSGLARRRLTIPFNNPF 186
>gi|284923731|emb|CBG36828.1| putative prophage DNA primase [Escherichia coli 042]
Length = 777
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 100/261 (38%), Gaps = 29/261 (11%)
Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTG----TPFVEGEPSQ-------EFLDLV 473
S R +G ++G+LD + G P + ++ TP V+GE + +LD
Sbjct: 410 SRRLIGFRNGVLDTQNG-TFHPHSPSHWMRTLCDVDFTPPVDGETLETHAPAFWRWLDRA 468
Query: 474 SGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
+G E D + M L Q F+ + G GGSGKS + + G +A
Sbjct: 469 AG--GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSA 526
Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593
+ R A SLIRL E + A +K +TGGD ++ Y
Sbjct: 527 TIETLESPR-ERAALTGFSLIRL---------PDQEKWSGDGAGLKAITGGDAVSVDPKY 576
Query: 594 GNTYSES-PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETK 650
+ YS PA V N + + RR ++I F + IA RD K+ +
Sbjct: 577 RDAYSTHIPAVIR--AVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITRE 634
Query: 651 YTLEAKKWFLKGVKAYISKGL 671
+ + K +++ L
Sbjct: 635 LAVIVRHLMQKFSDPMLARSL 655
>gi|313158768|gb|EFR58155.1| phage/plasmid primase, P4 family, C-terminal domain protein
[Alistipes sp. HGB5]
Length = 493
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 44/210 (20%), Positives = 92/210 (43%), Gaps = 27/210 (12%)
Query: 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMG 558
K ++ + + G G +GKS ++ G + VI D+ + L+
Sbjct: 235 KEEKALMLYGGGANGKSVFFEIVNALLGAENVICHSLQDLTDGSGYYRAQLANKLVN-YA 293
Query: 559 SRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPAS---FTPFIVPNKHLF 615
S I N ++ ++ KQ+ G+ ++ARL YG + + + F +P + F
Sbjct: 294 SEI--------NGKLESSIFKQLVSGEPVSARLPYGKPFHLTHYARLIFNCNELPRGNEF 345
Query: 616 VRNPDDAWWRRYIVIPFDKPIANRDA---SFAQKLETKYTLEAKKWFLKGVKAYISKGLD 672
DA++RR++++PFD I + +Q +E + W L+G+ + +
Sbjct: 346 T----DAYFRRFLIVPFDVTIPPEEQIKDLHSQIIENELA-GVFNWVLRGLARLLKQNGF 400
Query: 673 VDIPEVCLKAK---EEERQGTDTYQAWIDD 699
+ C+ A+ E+ R +D+ + +++D
Sbjct: 401 TE----CIAARRAVEDYRLQSDSLRQFLND 426
>gi|311070553|ref|YP_003975476.1| P4 family phage/plasmid primase [Bacillus atrophaeus 1942]
gi|310871070|gb|ADP34545.1| P4 family phage/plasmid primase [Bacillus atrophaeus 1942]
Length = 608
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 45/221 (20%), Positives = 91/221 (41%), Gaps = 24/221 (10%)
Query: 422 LDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY-FESE 480
+++ F+ ++G+L+L T + + + + T + E + +F + + +
Sbjct: 250 MNTERNFINVKNGMLNLSTYRLHEHSPKYLSTVQIPIHYDENATASKFDEFMRDITLNNP 309
Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540
E++ +G L G KA++ ++ G G +GKS L +++ G + V + S
Sbjct: 310 ELIAVHQELIGYWLTGETKAEKAVYYYGSGANGKSVLASIVTELVGPENVSSVPLSKFND 369
Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNE--NDEINAAKIKQMTGGDCMTARLNYGNTYS 598
E+ M + + IS NE + K + GD +T + Y S
Sbjct: 370 QFGMES----------MIGKSLNISAENEMGGKALKTENFKAIVSGDNITINIKYRPAVS 419
Query: 599 ESPASFTPFIVPNKHLFVRNPD-----DAWWRRYIVIPFDK 634
P F+V N PD + ++R+ I++PF +
Sbjct: 420 YRPYCRLVFLVNNL------PDSSDVTEGYFRKLIIVPFSR 454
>gi|268610895|ref|ZP_06144622.1| primase, putative [Ruminococcus flavefaciens FD-1]
Length = 446
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 69/181 (38%), Gaps = 34/181 (18%)
Query: 484 DYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP 543
D R +G L + + + G GKSTL+ +I+ A V N +
Sbjct: 158 DCIFRSIGFGLSSLTDVKCAVFLIGESDGGKSTLLRIIESAVTPGLVSNISFQQL----- 212
Query: 544 PEAGKANPSL-IRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602
+P I+L G ++ I + + N K + + + R E+P
Sbjct: 213 -----GDPHYTIQLQGKKLNISYDNSSKALDNEHIFKSIVSCEKIEGR-----ALRENPV 262
Query: 603 SFTP----FIVPNKHLFVRNPDDAWWRRYIVIPF--------------DKPIANRDASFA 644
F P F N+ ++PD A +RR ++IPF DK + RDA F+
Sbjct: 263 QFVPTAKLFFASNRPYVFKHPDQALYRRMVIIPFEYSIPPDKQDKHLLDKLMDERDAIFS 322
Query: 645 Q 645
+
Sbjct: 323 R 323
>gi|227113527|ref|ZP_03827183.1| hypothetical protein PcarbP_11212 [Pectobacterium carotovorum
subsp. brasiliensis PBR1692]
Length = 775
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 55/239 (23%), Positives = 95/239 (39%), Gaps = 25/239 (10%)
Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTG----TPFVEGEPSQEFLD-----LVSGYF 477
R +G ++G+ D +G+ KP + + + TPF GE + L
Sbjct: 412 RLIGFRNGVFDTASGE-FKPHRREHWLNTVNDVDYTPFKAGENLADNAPHFWRWLTRAAG 470
Query: 478 ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
+ + + + M L Q F+ + G GGSGKS L + G A +
Sbjct: 471 SNTDKQERILAALFMVLANCYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNTTAATINT 530
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
I E+ + S+I G ++++ + E + A IK +TGGD + Y + Y
Sbjct: 531 I------ESSRERSSII---GFSLIVLPD-QEKWSGDGAGIKAITGGDAVMVDPKYRDAY 580
Query: 598 SES-PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK--PIANRDASFAQKLETKYTL 653
S PA V N + + RR ++I F + P + RD +K+ + +
Sbjct: 581 STRIPAVI--LAVNNSPMRFSDRSGGVSRRRVIIHFGETIPASERDPKLKEKIRAELAV 637
>gi|169830164|ref|YP_001700322.1| primase [Lysinibacillus sphaericus C3-41]
gi|168994652|gb|ACA42192.1| primase, putative [Lysinibacillus sphaericus C3-41]
Length = 373
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 48/235 (20%), Positives = 101/235 (42%), Gaps = 21/235 (8%)
Query: 422 LDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ-----EFLDLVSGY 476
L+ S + Q+G+ +L+T K++ Y++ + P + ++ F+D ++
Sbjct: 31 LNIYSDLVNLQNGMYNLKT-HKLEKHHPRYLS-TVRIPIIYNRSAKCPKFLHFMDEITN- 87
Query: 477 FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEAS 536
+++ +G + K+++ ++ G G +GKS L NL+K GN+ V S
Sbjct: 88 -NDSDLIKVHQELIGYWITTEIKSEKAVYYYGRGANGKSVLANLVKILVGNENV-----S 141
Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNEND-EINAAKIKQMTGGDCMTARLNYGN 595
I P +N L +M + + +E N ++N K + GD +T + + +
Sbjct: 142 TI----PLAQFNSNFGLEGIMNKTLNVAAENEMNGLKLNTETFKAIVSGDGITINIKFKS 197
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLE 648
+ + N+ + ++RR I+IPF + R+ Q+L+
Sbjct: 198 PIVNYKSKCRLLFLGNELPDTSDLTQGYFRRLIIIPFKRTFKEEERNRDILQELQ 252
>gi|146319168|ref|YP_001198880.1| virulence-associated protein E [Streptococcus suis 05ZYH33]
gi|146321372|ref|YP_001201083.1| virulence-associated protein E [Streptococcus suis 98HAH33]
gi|253752213|ref|YP_003025354.1| phage primase [Streptococcus suis SC84]
gi|253754039|ref|YP_003027180.1| phage primase [Streptococcus suis P1/7]
gi|253755973|ref|YP_003029113.1| phage primase [Streptococcus suis BM407]
gi|145689974|gb|ABP90480.1| Virulence-associated protein E [Streptococcus suis 05ZYH33]
gi|145692178|gb|ABP92683.1| Virulence-associated protein E [Streptococcus suis 98HAH33]
gi|251816502|emb|CAZ52138.1| putative phage primase [Streptococcus suis SC84]
gi|251818437|emb|CAZ56266.1| putative phage primase [Streptococcus suis BM407]
gi|251820285|emb|CAR46774.1| putative phage primase [Streptococcus suis P1/7]
gi|292558805|gb|ADE31806.1| Virulence-associated protein E [Streptococcus suis GZ1]
gi|319758602|gb|ADV70544.1| virulence-associated protein E [Streptococcus suis JS14]
Length = 510
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 59/250 (23%), Positives = 106/250 (42%), Gaps = 31/250 (12%)
Query: 469 FLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528
LDL +G +E+ + + + G + A+ F + G GG+GK TL L G Q
Sbjct: 199 LLDLFNG---DKELYQLSLQLLNAVVRGESYAKMFWFV-GEGGTGKGTLQELFINLIGRQ 254
Query: 529 YVINAEASDI-MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI-NAAKIKQMTGGDC 586
+ + + +D+ + NR +L + +G + +I + I + +K+ + GGD
Sbjct: 255 NIASIKITDLDVNNR--------FTLAQAIGKQAIIGDDVQAGAVIRDTSKLFSLVGGDT 306
Query: 587 MTARLNYGNTYSESPASFTPFIV---PNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASF 643
+T + YS +F +V N +R A RR +++PF+K + +
Sbjct: 307 VTVEKKGKDAYS----TFIKTVVIQSTNTLPKIRGDYHAIRRRMVILPFNKHFKGK-PNR 361
Query: 644 AQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDI 703
A K + ++ LK V +D+D + +K + D YQ ID
Sbjct: 362 AIKNDYITRPSVLEYVLKTV-------IDLDFKDFIEPSKSIDL--LDEYQETIDPVLAF 412
Query: 704 GENLWEESHS 713
+NL+ HS
Sbjct: 413 SQNLFTNLHS 422
>gi|284794737|ref|YP_003412090.1| hypothetical protein PhlaMp11 [Phaeoceros laevis]
gi|254596057|gb|ACT75298.1| hypothetical protein PhlaMp11 [Phaeoceros laevis]
Length = 316
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 86/200 (43%), Gaps = 10/200 (5%)
Query: 432 QDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVG 491
++G+L+ ET + + E ++T S G + P+ F + + + + F +
Sbjct: 48 ENGVLNPETKEFFSHSPEFFLTTSIGFNWDPSCPTTVFFKYLDDFTQGNKDYKLFIQAFL 107
Query: 492 MALLG-GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKAN 550
+L+ NKAQ F+ + G GGSGK+ L +++ G + ++ P E N
Sbjct: 108 QSLVKKQNKAQIFLVVIGPGGSGKTILAHVMTALAGKERT-GTTGLKRLETDPFE----N 162
Query: 551 PSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVP 610
+LI ++ +I++ E A +K G D + A + N + I+
Sbjct: 163 STLI----NKHLILANEAEEYHGTANNLKAFVGSDMLKASEKHKNDPKTAYYKGQVVIIG 218
Query: 611 NKHLFVRNPDDAWWRRYIVI 630
N L + +P + RR +I
Sbjct: 219 NNPLTINDPGGSVLRRVRLI 238
>gi|255283191|ref|ZP_05347746.1| conserved hypothetical protein [Bryantella formatexigens DSM 14469]
gi|255266264|gb|EET59469.1| conserved hypothetical protein [Bryantella formatexigens DSM 14469]
Length = 1386
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 77/337 (22%), Positives = 134/337 (39%), Gaps = 43/337 (12%)
Query: 447 TKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKA-QRFIH 505
+K Y +K P GE + + L+S + EE +G + G +K Q+F+
Sbjct: 122 SKNDYASKRLSYPLEAGE-IKAYDRLISTLYSPEE-RHKIEWAIGAIVSGESKTIQKFMV 179
Query: 506 IRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP---EAGKANPSLIRLMGSRIV 562
+ G G+GKST++N+I+ F + Y A D+ + E K NP +V
Sbjct: 180 LYGAAGTGKSTVLNIIEKLF-DGYCTVFSAKDLGSSGSQFALEPFKTNP---------LV 229
Query: 563 IISETNENDEI-NAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDD 621
I E I + ++ + + MT + +TY+ F F+ NK + + +
Sbjct: 230 AIQHDGELSRIDDNTRLNSLVSHELMTVNEKFKSTYASRFKCFL-FVGSNKPVKITDGKS 288
Query: 622 AWWRRYI-VIPFDKPIANRDASFAQKL-ETKYTLEAKKWFLKGVKAYISKGLDVDIPEVC 679
RR I V P K I +R+ + Q + + + L A W +GV D IP
Sbjct: 289 GLIRRLIDVHPSGKKIPSRE--YNQLVHQIDFELGAIAWHCRGVYMENPDYYDDYIPVEM 346
Query: 680 LKAKEE-------------ERQGTDTYQAW--IDDCCDIGENLWEESHSLAKSYSEYREQ 724
L A + GT AW C+ + + +S + ++E+
Sbjct: 347 LDATNDFYNFVIDSYSVFKREDGTSLKAAWEMYKQYCEDAKVPYPDSRRV------FKEE 400
Query: 725 ELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWK 761
NY R+ + + + + + G + +K E E K
Sbjct: 401 LKNYFREVLDRFEMEDGTRVRSYYKGFRTDKFEMEKK 437
>gi|240119370|dbj|BAH79233.1| putative P4-specific DNA primase [Escherichia coli O157:H7]
Length = 777
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 99/261 (37%), Gaps = 29/261 (11%)
Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTG----TPFVEGEPSQ-------EFLDLV 473
S +G ++G+LD + G P + ++ TP VEGE + +LD
Sbjct: 410 SRCLIGFRNGVLDTQNG-TFHPHSPSHWMRTLCDVDFTPPVEGETLETHAPAFWRWLDRA 468
Query: 474 SGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
+G E D + M L Q F+ + G GGSGKS + + G +A
Sbjct: 469 AG--GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEHNATSA 526
Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593
+ R A SLIRL E + A +K +TGGD ++ Y
Sbjct: 527 TIETLESPR-ERAALTGFSLIRL---------PDQEKWSGDGAGLKAITGGDAVSVDPKY 576
Query: 594 GNTYSES-PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETK 650
+ YS PA V N + + RR ++I F + IA RD K+ +
Sbjct: 577 RDAYSTHIPAVI--LAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITRE 634
Query: 651 YTLEAKKWFLKGVKAYISKGL 671
+ + K +++ L
Sbjct: 635 LAVIVRHLMQKFSDPMLARSL 655
>gi|294637020|ref|ZP_06715338.1| putative P4-specific DNA primase [Edwardsiella tarda ATCC 23685]
gi|291089789|gb|EFE22350.1| putative P4-specific DNA primase [Edwardsiella tarda ATCC 23685]
Length = 774
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 62/250 (24%), Positives = 102/250 (40%), Gaps = 31/250 (12%)
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPF---VEGEPSQ-------EFLDL 472
+ + + +G ++G+LD TG K+ ++ + V+GE + +LD
Sbjct: 405 NPARQLIGFRNGVLDTRTGLFSPHDKKHWLRTLCEVDYTQPVDGESLETHAPAFWRWLDR 464
Query: 473 VSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532
+G+ + E D + M Q F+ + G GGSGKS L + G N
Sbjct: 465 AAGF--NPEKRDIILAALFMVQANRYDWQLFLEVTGPGGSGKSILAEIATMLAGED---N 519
Query: 533 AEASDI-MQNRPPE-AGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR 590
A ++ I M P E A SLIRL E + A +K +TGGD ++
Sbjct: 520 ATSATIEMLESPRERAALIGFSLIRL---------PDQEKWSGDGAGLKAITGGDAVSVD 570
Query: 591 LNYGNTYSES-PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKL 647
Y N YS PA V N + + RR +++ F IA RD +K+
Sbjct: 571 PKYQNAYSTHIPAVI--LAVNNNPMRFTDRSGGVSRRRVILHFPDQIAPEERDTQLKEKI 628
Query: 648 ETKYTLEAKK 657
++ + ++
Sbjct: 629 ASELAVIVRQ 638
>gi|268592737|ref|ZP_06126958.1| putative P4-specific DNA primase [Providencia rettgeri DSM 1131]
gi|291311513|gb|EFE51966.1| putative P4-specific DNA primase [Providencia rettgeri DSM 1131]
Length = 801
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 47/230 (20%), Positives = 90/230 (39%), Gaps = 22/230 (9%)
Query: 421 LLDSSSRFL-GEQDGILDLETGQKVKPTKEL-YITKSTGTPFVEGEPSQEFLDLVSGYFE 478
++ +SRFL G +G+ DL T + +P + ++T F P++ + D +++
Sbjct: 428 VMGETSRFLIGFANGVYDL-TEKSFRPHSAIDWLTNHNNIEFTSPLPNENYQDHAPNFYK 486
Query: 479 --------SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530
E M+ + M L Q F+ I G GGSGKS + G+
Sbjct: 487 WLSQSSGGKNEYMERIKAALFMVLANRYDWQLFLEITGPGGSGKSVFTGIAALLAGHHNT 546
Query: 531 INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR 590
+ D+ R ++ +G ++I+ + E + A +K +TGGD +
Sbjct: 547 ASGSVRDLDIPRERDS---------FVGKSLIILPD-QERYSGSGAGLKAITGGDPVKVD 596
Query: 591 LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD 640
+ + E+ N+ + RR ++ PF + +D
Sbjct: 597 PKHVRPF-ETVIEGVVMATNNEPMRFNEHQGGIARRQVIFPFTSQVKEKD 645
>gi|86750422|ref|YP_486918.1| hypothetical protein RPB_3311 [Rhodopseudomonas palustris HaA2]
gi|86573450|gb|ABD08007.1| hypothetical protein RPB_3311 [Rhodopseudomonas palustris HaA2]
Length = 1082
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 58/145 (40%), Gaps = 24/145 (16%)
Query: 27 DKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFE 86
D++P R ++E D P CG G CG L A DID D +
Sbjct: 60 DRQPHRFA------FTAELRD--PECGIGIACGFNN--LVAVDIDRDD-----LIEPLLA 104
Query: 87 ILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCG-QYFVAYNIHPKTK 145
+L P+V + K L F E K T G LD + G Q + IHP T
Sbjct: 105 VL--PPMVVAKRGRKGLTVFYRGAEHWPKANYT----GFLDFIARGAQTVLPPTIHPDTG 158
Query: 146 KEYTWTTPPHRF--KVEDTPLLSEE 168
+ Y WTT VE+ PLL+ +
Sbjct: 159 QPYAWTTERTLLDTPVEELPLLTAD 183
>gi|191639830|ref|YP_001988996.1| RepA protein [Lactobacillus casei BL23]
gi|190714132|emb|CAQ68138.1| RepA protein [Lactobacillus casei BL23]
gi|327383940|gb|AEA55416.1| Phage/plasmid primase, P4 family [Lactobacillus casei LC2W]
gi|327387122|gb|AEA58596.1| Phage/plasmid primase, P4 family [Lactobacillus casei BD-II]
Length = 528
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 57/266 (21%), Positives = 101/266 (37%), Gaps = 45/266 (16%)
Query: 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSR 560
Q F+ + G GG GKSTL+ I G V ++ +D+ G L G
Sbjct: 252 QAFLWLYGTGGEGKSTLIRRITNLIGRDNVSASKPADLAN------GDRRFETANLYGKE 305
Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTAR---------LNYGN---------TYSESPA 602
I+++ + + A IK +TGGD + A +NY +S+ +
Sbjct: 306 ANIVADVGSDYLKSTAAIKSLTGGDYIAAEFKGIQNFKFMNYAKLLFSANEMPAFSDHSS 365
Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKG 662
F + K + WW ++ D+ ++ ++ F K
Sbjct: 366 GFADRVTVIKMINGDTRHTHWWDQFDDAKMDEETP------------RFAMKCMHMFAKA 413
Query: 663 VKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDI--GENLWEESHSLAKSYSE 720
+K S GL P+ + A +E D ++ ++D +I E+ E S + Y
Sbjct: 414 LK---SGGLTK--PDSVVNASQEWLDANDHFKEFLDQYAEINLNEDRGEVSTVVTAEYKR 468
Query: 721 YREQELNYDRKRISTRTVTLNLKQKG 746
+ Q+ NY + +T+ +T L G
Sbjct: 469 FC-QDNNY-MDKTTTQAITKKLDAYG 492
>gi|266621007|ref|ZP_06113942.1| conserved hypothetical protein [Clostridium hathewayi DSM 13479]
gi|288867323|gb|EFC99621.1| conserved hypothetical protein [Clostridium hathewayi DSM 13479]
Length = 1448
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 82/187 (43%), Gaps = 16/187 (8%)
Query: 448 KELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLG-GNKAQRFIHI 506
K+ Y +K P G+ S + L+S + SEE +G + G K Q+F+ +
Sbjct: 123 KKDYASKKLNYPLEAGDLSA-YEKLMSTLY-SEEERTKIEWAIGSIVSGESKKLQKFMVL 180
Query: 507 RGVGGSGKSTLMNLIKYAFGNQY-VINAEASDIMQNR-PPEAGKANPSLIRLMGSRIVII 564
G G+GKST++N+I+ F Y V +A+A N EA K NP +V I
Sbjct: 181 YGAAGTGKSTVLNIIQQLFDGYYSVFDAKALGSSSNSFALEAFKTNP---------LVAI 231
Query: 565 SETNENDEI-NAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAW 623
+ I + ++ + + MT + +TYS F F+ NK + + +
Sbjct: 232 QHDGDLSRIEDNTRLNSLVSHELMTVNEKFKSTYSNRFKCFL-FMGTNKPVKITDAKSGL 290
Query: 624 WRRYIVI 630
RR I +
Sbjct: 291 IRRLIDV 297
>gi|323485201|ref|ZP_08090552.1| hypothetical protein HMPREF9474_02303 [Clostridium symbiosum
WAL-14163]
gi|323401520|gb|EGA93867.1| hypothetical protein HMPREF9474_02303 [Clostridium symbiosum
WAL-14163]
Length = 1447
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 82/187 (43%), Gaps = 16/187 (8%)
Query: 448 KELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLG-GNKAQRFIHI 506
K+ Y +K P G+ S + L+S + SEE +G + G K Q+F+ +
Sbjct: 123 KKDYASKKLNYPLEAGDLSA-YEKLMSTLY-SEEERTKIEWAIGSIVSGESKKLQKFMVL 180
Query: 507 RGVGGSGKSTLMNLIKYAFGNQY-VINAEASDIMQNR-PPEAGKANPSLIRLMGSRIVII 564
G G+GKST++N+I+ F Y V +A+A N EA K NP +V I
Sbjct: 181 YGAAGTGKSTVLNIIQQLFDGYYSVFDAKALGSSSNSFALEAFKTNP---------LVAI 231
Query: 565 SETNENDEI-NAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAW 623
+ I + ++ + + MT + +TYS F F+ NK + + +
Sbjct: 232 QHDGDLSRIEDNTRLNSLVSHELMTVNEKFKSTYSNRFKCFL-FMGTNKPVKITDAKSGL 290
Query: 624 WRRYIVI 630
RR I +
Sbjct: 291 IRRLIDV 297
>gi|126661282|ref|ZP_01732353.1| hypothetical protein CY0110_01270 [Cyanothece sp. CCY0110]
gi|126617438|gb|EAZ88236.1| hypothetical protein CY0110_01270 [Cyanothece sp. CCY0110]
Length = 1056
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 50/214 (23%), Positives = 89/214 (41%), Gaps = 24/214 (11%)
Query: 432 QDGILDLETGQKVKPTKELYITKSTG---TPFVEGEP-SQEFLDLVSGYFESEEVMDYFT 487
++G+LD+ET + Y T S P GEP Q L+++ G E +++
Sbjct: 454 KNGVLDIETRDLWPHSPTNYFTWSLPYDYNPLATGEPIKQWLLEMMQG---DESLVELIR 510
Query: 488 RCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAG 547
+ + G Q+F+ + G GG+GKSTL+ L G N + + + +
Sbjct: 511 AYLHGVVTGRADWQKFLELIGPGGTGKSTLIRLAIALVG---FSNCHVTTLKRLETSKFE 567
Query: 548 KANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP- 606
AN + R+V++++ E + +K +TG D L Y ++ F P
Sbjct: 568 TAN-----IKDKRLVLVTDA-ERYTGDVTTLKALTGEDS----LPYEKKMQQATGGFKPD 617
Query: 607 ---FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637
I N+H+ + RR I + + I+
Sbjct: 618 CLVIIAGNEHIKTADYTSGLQRRRITVGMKRKIS 651
>gi|284176401|ref|YP_003406676.1| phage/plasmid primase, P4 family [Haloterrigena turkmenica DSM
5511]
gi|284018058|gb|ADB64003.1| phage/plasmid primase, P4 family [Haloterrigena turkmenica DSM
5511]
Length = 1285
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 46/171 (26%), Positives = 81/171 (47%), Gaps = 20/171 (11%)
Query: 422 LDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPS------QEFLDLVSG 475
+D+ LG +G+ D + G+ + + T+S + E S +EF+D ++
Sbjct: 673 IDADLVCLG--NGVYDFDAGKLREHDPKYLFTQSIPWDYPENPESAECPAIEEFMDDITQ 730
Query: 476 YFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVIN-AE 534
+ M F +G ALL + F+ + G G +GK+T N+++ G Q I+ AE
Sbjct: 731 READKLTMYEF---IGHALLPHYDYKAFMVLFGPGDNGKTTFYNVVEQLLGGQSNISAAE 787
Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGD 585
++I +NR +A ++G+ I +E N + IK+MTGGD
Sbjct: 788 MAEIAENR----FRAE----TVIGNYANIAAEMNARKIDDMGMIKKMTGGD 830
>gi|168784927|ref|ZP_02809934.1| nucleoside triphosphatase, D5 family [Escherichia coli O157:H7 str.
EC869]
gi|189374731|gb|EDU93147.1| nucleoside triphosphatase, D5 family [Escherichia coli O157:H7 str.
EC869]
Length = 777
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 99/261 (37%), Gaps = 29/261 (11%)
Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTG----TPFVEGEPSQ-------EFLDLV 473
S +G ++G+LD + G P + ++ TP VEGE + +LD
Sbjct: 410 SRCLIGFRNGVLDTQNG-TFHPHSPSHWMRTLCDVDFTPPVEGETLETHAPAFWRWLDRA 468
Query: 474 SGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
+G E D + M L Q F+ + G GGSGKS + + G +A
Sbjct: 469 AG--GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSA 526
Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593
+ R A SLIRL E + A +K +TGGD ++ Y
Sbjct: 527 TIETLESPR-ERAALTGFSLIRL---------PDQEKWSGDGAGLKAITGGDAVSVDPKY 576
Query: 594 GNTYSES-PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETK 650
+ YS PA V N + + RR ++I F + IA RD K+ +
Sbjct: 577 RDAYSTHIPAVI--LAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITRE 634
Query: 651 YTLEAKKWFLKGVKAYISKGL 671
+ + K +++ L
Sbjct: 635 LAVIVRHLMQKFSDPMLARSL 655
>gi|170019093|ref|YP_001724047.1| P4 family phage/plasmid primase [Escherichia coli ATCC 8739]
gi|169754021|gb|ACA76720.1| phage/plasmid primase, P4 family [Escherichia coli ATCC 8739]
Length = 777
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 63/261 (24%), Positives = 99/261 (37%), Gaps = 29/261 (11%)
Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTG----TPFVEGEPSQ-------EFLDLV 473
S +G ++G+LD + G P + ++ TP VEGE + +LD
Sbjct: 410 SRCLIGFRNGVLDTQNG-TFHPHSPSHWMRTLCDVDFTPPVEGETLETHAPAFWRWLDRA 468
Query: 474 SGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
+G E D + M L Q F+ + G GGSGKS + + G +A
Sbjct: 469 AG--GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSA 526
Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593
+ R A SLIRL E + A +K +TGGD ++ Y
Sbjct: 527 TIETLESPR-ERAALTGFSLIRL---------PDQEKWSGDGAGLKAITGGDAVSVDPKY 576
Query: 594 GNTYSES-PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETK 650
+ YS PA V N + + RR ++I F + IA RD K+ +
Sbjct: 577 RDAYSTHIPAVI--LAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITRE 634
Query: 651 YTLEAKKWFLKGVKAYISKGL 671
+ + K +++ L
Sbjct: 635 LAVIVRHLMQKFSDPMLARSL 655
>gi|227329980|ref|ZP_03834004.1| hypothetical protein PcarcW_22653 [Pectobacterium carotovorum
subsp. carotovorum WPP14]
Length = 451
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 56/241 (23%), Positives = 98/241 (40%), Gaps = 29/241 (12%)
Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTG----TPFVEGEPSQE-------FLDLVSG 475
R +G ++G+ D +G+ KP + + + TPF GE + +L +G
Sbjct: 157 RLIGFRNGVFDTVSGE-FKPHRREHWLHTVNDVDYTPFKAGENLADNAPHFWRWLTRAAG 215
Query: 476 YFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535
+ + + + M L Q F+ + G GGSGKS L + G A
Sbjct: 216 --NNADKQERILAALFMVLANCYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNTTAATI 273
Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595
+ I E+ + S+I G ++++ + E + A IK +TGGD + Y +
Sbjct: 274 NTI------ESSRERSSII---GFSLIVLPD-QEKWSGDGAGIKAITGGDAVMVDPKYRD 323
Query: 596 TYSES-PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK--PIANRDASFAQKLETKYT 652
YS PA V N + + RR ++I F + P + RD +K+ +
Sbjct: 324 AYSTRIPAVI--LAVNNSPMRFSDRSGGVSRRRVIIHFGETIPASERDPKLKEKIRAELA 381
Query: 653 L 653
+
Sbjct: 382 V 382
>gi|293415902|ref|ZP_06658542.1| DNA primase [Escherichia coli B185]
gi|291432091|gb|EFF05073.1| DNA primase [Escherichia coli B185]
Length = 777
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 62/258 (24%), Positives = 98/258 (37%), Gaps = 29/258 (11%)
Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTG----TPFVEGEPSQ-------EFLDLVSGY 476
+G ++G+LD + G P + ++ TP VEGE + +LD +G
Sbjct: 413 LIGFRNGVLDTQNG-TFHPHSPSHWMRTLCDVDFTPPVEGETLETHAPAFWRWLDRAAG- 470
Query: 477 FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEAS 536
E D + M L Q F+ + G GGSGKS + + G +A
Sbjct: 471 -GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIE 529
Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNT 596
+ R A SLIRL E + A +K +TGGD ++ Y +
Sbjct: 530 TLESPR-ERAALTGFSLIRL---------PDQEKWSGDGAGLKAITGGDAVSVDPKYRDA 579
Query: 597 YSES-PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTL 653
YS PA V N + + RR ++I F + IA RD K+ + +
Sbjct: 580 YSTHIPAVI--LAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITRELAV 637
Query: 654 EAKKWFLKGVKAYISKGL 671
+ K +++ L
Sbjct: 638 IVRHLMQKFSDPMLARSL 655
>gi|213028477|ref|ZP_03342924.1| bacteriophage P4 DNA primase [Salmonella enterica subsp. enterica
serovar Typhi str. 404ty]
Length = 389
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 49/184 (26%), Positives = 71/184 (38%), Gaps = 22/184 (11%)
Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPF---VEGEPSQ-------EFLDLVS 474
+ R +G ++G+LD TG K ++ F VEGE + +LD +
Sbjct: 208 ARRLIGFRNGVLDTATGTFSPHHKSHWLRTLCDVDFTSPVEGETLETHAPHFWRWLDRAA 267
Query: 475 GYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
G E D + M L Q F+ + G GGSGKS L + G +A
Sbjct: 268 G--GKPEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNATSAT 325
Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
+ R A SLIRL E + A +K +TGGD ++ Y
Sbjct: 326 IETLESPR-ERAALIGFSLIRL---------PDQEKWSGDGAGLKAITGGDAVSVDPKYK 375
Query: 595 NTYS 598
+ YS
Sbjct: 376 DAYS 379
>gi|146312751|ref|YP_001177825.1| plasmid and phage DNA primase [Enterobacter sp. 638]
gi|145319627|gb|ABP61774.1| plasmid and phage DNA primase [Enterobacter sp. 638]
Length = 777
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 97/241 (40%), Gaps = 37/241 (15%)
Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTG---TPFVEGEPSQ-------EFLD-LV 473
+ R +G ++G+LD TG K ++ TP V+GE + +LD
Sbjct: 410 ARRLIGFRNGVLDTLTGVFSPHNKSHWLRTLCDVDFTPPVDGETLETHAPNFWRWLDRAA 469
Query: 474 SGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
SG E +V+ + M L Q F+ + G GGSGKS L + G NA
Sbjct: 470 SGNAEKRDVI---LAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATLLAGED---NA 523
Query: 534 EASDIMQNRPP--EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARL 591
++ I P A SLIRL E + A +K +TGGD ++
Sbjct: 524 TSATIETLESPRERAALIGFSLIRL---------PDQEKWSGDGAGLKAITGGDAVSVDP 574
Query: 592 NYGNTYSESPASFTPFI---VPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQK 646
Y + YS ++ P + V N + + RR ++I F + IA RD K
Sbjct: 575 KYRDAYS----AYIPAVILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPEERDPQLKDK 630
Query: 647 L 647
+
Sbjct: 631 I 631
>gi|289569622|ref|ZP_06449849.1| phiRv1 phage protein [Mycobacterium tuberculosis T17]
gi|289543376|gb|EFD47024.1| phiRv1 phage protein [Mycobacterium tuberculosis T17]
Length = 240
Score = 42.7 bits (99), Expect = 0.22, Method: Composition-based stats.
Identities = 40/145 (27%), Positives = 59/145 (40%), Gaps = 5/145 (3%)
Query: 387 FNTDYRRQNVEENSKAKSTAQSLEAGSI---FSITSDLLDSSSRFLGEQDGILDLETGQK 443
N R +V + A A L+ + F+ T LDS L +G LDL T K
Sbjct: 92 LNDKELRADVRKCESASGVAGVLDLAAALVPFAATVADLDSDPHLLNVANGTLDLHT-LK 150
Query: 444 VKPTKEL-YITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQR 502
++P ITK + S + ++ E V + R G+ LLG +
Sbjct: 151 LRPHAPADRITKICRGAYQSDTESPLWQAFLTRVLPDEGVRGFVQRLAGVGLLGTVREHV 210
Query: 503 FIHIRGVGGSGKSTLMNLIKYAFGN 527
+ GVG +GKS I+YA G+
Sbjct: 211 LAILIGVGANGKSVFDKAIRYALGD 235
>gi|207270806|ref|YP_002261448.1| gp32 [Listeria phage P40]
gi|204308021|gb|ACI00392.1| gp32 [Listeria phage P40]
Length = 635
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 95/225 (42%), Gaps = 30/225 (13%)
Query: 460 FVEGEPSQEFLDLVSGYFESEEVMDY---FTRCVGMALLGGNKAQR-----FIHIRGVGG 511
+ + EP D ++ E +E DY C+G L+ + +R FI I G GG
Sbjct: 330 YPDAEPVAMVDDYITNLTEGDE--DYRKLLLECLGSTLITNPETKRALAKLFIFI-GKGG 386
Query: 512 SGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEND 571
GK T++ +++ G++ V + D+ + + L L G ++ + + EN
Sbjct: 387 EGKGTMLTILRRILGDESVSASSIEDLTREQ---------YLYSLTG-KLANLCDDVENK 436
Query: 572 EINAAK---IKQMTGGDCMTARLNYGNTYSESPASFT-PFIVPNKHLFVR-NPDDAWWRR 626
IN K +K ++ D + R ++ PA+ T I+ + HL ++W RR
Sbjct: 437 PINDKKMKILKNISTCDRIELRKMREQSF---PATLTCSLILTSNHLLKSFEKGESWKRR 493
Query: 627 YIVIPFDKPIANRDASFAQKLETKYTLEA-KKWFLKGVKAYISKG 670
+ +P +D F K+ T LE + ++G I G
Sbjct: 494 VVWLPMFNRGFKKDPRFITKVTTPKALEYWVRLMMEGYNRIIENG 538
>gi|260857931|ref|YP_003231822.1| putative DNA primase [Escherichia coli O26:H11 str. 11368]
gi|257756580|dbj|BAI28082.1| putative DNA primase [Escherichia coli O26:H11 str. 11368]
gi|323155327|gb|EFZ41510.1| phage/plasmid primase, P4 family, C-terminal domain protein
[Escherichia coli EPECa14]
Length = 777
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 62/261 (23%), Positives = 99/261 (37%), Gaps = 29/261 (11%)
Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTG----TPFVEGEPSQ-------EFLDLV 473
S +G ++G+LD + G P + ++ TP V+GE + +LD
Sbjct: 410 SRHLIGFRNGVLDTQNG-TFHPHSPSHWMRTLCDVDFTPPVDGETLETHAPAFWRWLDRA 468
Query: 474 SGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
+G E D + M L Q F+ + G GGSGKS + + G +A
Sbjct: 469 AG--GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSA 526
Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593
+ R A SLIRL E + A +K +TGGD ++ Y
Sbjct: 527 TIETLESPR-ERAALTGFSLIRL---------PDQEKWSGDGAGLKAITGGDAVSVDPKY 576
Query: 594 GNTYSES-PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETK 650
+ YS PA V N + + RR ++I F + IA RD K+ +
Sbjct: 577 RDAYSTHIPAVI--LAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITRE 634
Query: 651 YTLEAKKWFLKGVKAYISKGL 671
+ + K +++ L
Sbjct: 635 LAVIVRHLMQKFSDPMLARSL 655
>gi|238784156|ref|ZP_04628169.1| P4-specific DNA primase [Yersinia bercovieri ATCC 43970]
gi|238714865|gb|EEQ06864.1| P4-specific DNA primase [Yersinia bercovieri ATCC 43970]
Length = 777
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 50/234 (21%), Positives = 89/234 (38%), Gaps = 23/234 (9%)
Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLD--------LVSGY 476
+ +G ++G+ D TGQ K ++ + + + D L
Sbjct: 413 ARHLIGFRNGVFDTTTGQFSAHQKTHWLRTVNSVDYTPPKAGENLSDHAPHFWRWLTRAA 472
Query: 477 FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEAS 536
+ E + + M L Q F+ + G GGSGKS + ++ G +A
Sbjct: 473 GQQHEKQERILAALYMVLANRYDWQLFLEVTGPGGSGKSVMASIASLLAGKDNTTSATID 532
Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNT 596
+ E+ + S++ G ++I+ + E + A IK +TGGD + Y +
Sbjct: 533 TL------ESSRERASVV---GFSLIILPD-QERWSGDGAGIKAITGGDAVAIDPKYRDA 582
Query: 597 YSES-PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK--PIANRDASFAQKL 647
YS PA V N + + RR +++PF + P RD K+
Sbjct: 583 YSTHIPAVI--LAVNNNPMQFSDRSGGVSRRRVILPFPEVIPANERDPQLLAKI 634
>gi|284008872|emb|CBA75685.1| phage primase [Arsenophonus nasoniae]
Length = 477
Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 36/163 (22%), Positives = 73/163 (44%), Gaps = 13/163 (7%)
Query: 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSR 560
Q FI + GVGGSGKS M++ ++ G + E + R G+A + +G +
Sbjct: 277 QLFIEVTGVGGSGKSVFMHIAEFLTGKHNTSSGELKSLDDAR----GRA-----QFVGKK 327
Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
++++ + + + +K +TGGD + Y +S S I N+ +
Sbjct: 328 LILLPDQRKYSG-DGEGLKAITGGDDVGIDPKYEKQFSMVMKSVV-IITGNRPMQFTERH 385
Query: 621 DAWWRRYIVIPFDK--PIANRDASFAQKLETKYTLEAKKWFLK 661
+ RR ++ F++ P ++D +K+E + + + L+
Sbjct: 386 NGIARRRVIFHFNESVPDKDKDKKLTEKIEAEIPVIIRDLLLE 428
>gi|160932537|ref|ZP_02079927.1| hypothetical protein CLOLEP_01375 [Clostridium leptum DSM 753]
gi|156868496|gb|EDO61868.1| hypothetical protein CLOLEP_01375 [Clostridium leptum DSM 753]
Length = 1383
Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 84/190 (44%), Gaps = 17/190 (8%)
Query: 446 PT-KELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLG-GNKAQRF 503
PT K+ Y +K P EG + + L+S + SEE +G + G K Q+F
Sbjct: 120 PTNKKDYASKRLNYPLEEG-ATDAWNKLMSTIY-SEEERTKIEWAIGSIVCGESKKLQKF 177
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQY-VINAEASDIMQNR-PPEAGKANPSLIRLMGSRI 561
+ + G G+GKST++N+++ F Y V +A+A N EA K NP +
Sbjct: 178 MVLYGAAGTGKSTVLNIVQQLFEGYYSVFDAKALGSSSNSFALEAFKTNP---------L 228
Query: 562 VIISETNENDEI-NAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
V I + I + ++ + + MT + +TY+ F F+ NK + + +
Sbjct: 229 VAIQHDGDLSRIEDNTRLNSLVSHELMTVNEKFKSTYANRFKCFL-FMGTNKPVKITDAK 287
Query: 621 DAWWRRYIVI 630
RR I +
Sbjct: 288 SGLIRRLIDV 297
>gi|167855067|ref|ZP_02477840.1| phage DNA primase-like protein [Haemophilus parasuis 29755]
gi|167853805|gb|EDS25046.1| phage DNA primase-like protein [Haemophilus parasuis 29755]
Length = 609
Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 53/235 (22%), Positives = 105/235 (44%), Gaps = 31/235 (13%)
Query: 428 FLGEQDGILDLETGQKVKPTKELYI---------TKSTGTPFVEGEPSQEFLDLVSGYFE 478
+LG Q+G+L+ +TG+ + ++E ++ T T TP+ + ++L VS
Sbjct: 253 YLGFQNGVLNKKTGEFLPHSEENFLRTIDPFECRTDCTDTPYFD-----DWLSFVSN--G 305
Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA-SD 537
+++ D + M L ++ F+ G GG+GKS L + V+N ++ +
Sbjct: 306 NQQKHDAILAGLYMILTNRHEWHLFLEATGEGGAGKSILGEIAT-------VLNGKSNTA 358
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
I+ + E+ K L+ + + S + + A +K MTGGD + +L Y +
Sbjct: 359 ILDLKAFESEKGRAVLV----GKTLAYSPDQKPYKGTADDLKAMTGGDPIKVKLLYKDEL 414
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK--PIANRDASFAQKLETK 650
E + + N + + + RR ++I FD+ P +D F +K+ +
Sbjct: 415 -EIKVNAIFMMSTNYPITFTDRNGGITRRRVIILFDRKIPKEKKDVYFMEKVRAE 468
>gi|167767035|ref|ZP_02439088.1| hypothetical protein CLOSS21_01553 [Clostridium sp. SS2/1]
gi|167711010|gb|EDS21589.1| hypothetical protein CLOSS21_01553 [Clostridium sp. SS2/1]
Length = 1387
Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 53/203 (26%), Positives = 90/203 (44%), Gaps = 19/203 (9%)
Query: 448 KELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKA-QRFIHI 506
KE Y +K P G+ S + L+S + EE +G + G +K Q+F+ +
Sbjct: 119 KEDYASKRLDYPLEPGDTSA-YEKLISTLYTEEERYK-IEWAIGSIVTGDSKTIQKFLVL 176
Query: 507 RGVGGSGKSTLMNLIKYAF-GNQYVINAEASDIMQNR-PPEAGKANPSLIRLMGSRIVII 564
G G+GKST++N+I+ F G +A+A N EA K NP +V I
Sbjct: 177 YGEAGTGKSTILNIIQKLFNGYCSTFDAKAIGSASNMFALEAFKTNP---------LVAI 227
Query: 565 SETNENDEI-NAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAW 623
+ I + ++ + + MT + + ++ S +F F+ NK + + +
Sbjct: 228 QHDGDLSRIEDNTRLNSLVSHELMTVNEKFKSAFTNSFKAFL-FMGTNKPVKITDGKSGL 286
Query: 624 WRRYIVIPFDKPIANRDASFAQK 646
RR I + KP N+ +S A K
Sbjct: 287 IRRLIDV---KPSGNKLSSKAYK 306
>gi|298674413|ref|YP_003726163.1| phage/plasmid primase [Methanohalobium evestigatum Z-7303]
gi|298287401|gb|ADI73367.1| phage/plasmid primase, P4 family [Methanohalobium evestigatum
Z-7303]
Length = 545
Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 70/163 (42%), Gaps = 12/163 (7%)
Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549
+G L+ + Q+F+ G GKS L+ LI GN Y ++ E+ ++N
Sbjct: 278 IGYTLIPNTRLQKFVMFYGPRDGGKSVLIKLITCLLGN-YNVSGESLQNLEN-------D 329
Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609
+ S+ L G + + + + IK MTG D R+N +
Sbjct: 330 DFSIANLEGKLLNAFPDLPDYGFYQNSVIKIMTGDDGYI-RVNIKKVQPYKTTITARLMF 388
Query: 610 PNKHL-FVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLET 649
+L ++NPD+A+++R ++I F ++D + KL T
Sbjct: 389 STNNLPVIKNPDEAFFKRLMLIEFPNTFQGDSKDVNLIDKLTT 431
>gi|304407256|ref|ZP_07388909.1| phage/plasmid primase, P4 family [Paenibacillus curdlanolyticus
YK9]
gi|304343697|gb|EFM09538.1| phage/plasmid primase, P4 family [Paenibacillus curdlanolyticus
YK9]
Length = 808
Score = 42.4 bits (98), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 42/216 (19%), Positives = 90/216 (41%), Gaps = 14/216 (6%)
Query: 422 LDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFES-E 480
+D+ +L ++G+L+L T + E T + EFL+ +S F+ E
Sbjct: 436 MDAERNYLNLENGMLNLSTLELEPHRPEALSTVRVPIWYDMNAECPEFLEFLSVIFDGDE 495
Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540
E++D G L +A + G G +GKS L+ ++K G + + ++ +
Sbjct: 496 ELIDLVAEIFGYCLTTETRAHKAFIFYGKGSNGKSVLIEMLKCLIGKANISSLTLGELDK 555
Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNE--NDEINAAKIKQMTGGDCMTARLNYGNTYS 598
P + +++ ++ NE + ++ K + G+ + + +S
Sbjct: 556 ----------PFSRYGLVDKLLNVATENEVSSSALDTTYFKAIVSGEEIQVEKKHEQGFS 605
Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK 634
+P F + N + ++ + RR I++PF+K
Sbjct: 606 YAPYCKLVFAL-NNLPYSKDKSFGFRRRLIIVPFNK 640
>gi|329955099|ref|ZP_08296080.1| phage/plasmid primase, P4 family domain protein [Bacteroides clarus
YIT 12056]
gi|328526389|gb|EGF53404.1| phage/plasmid primase, P4 family domain protein [Bacteroides clarus
YIT 12056]
Length = 400
Score = 42.4 bits (98), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 50/260 (19%), Positives = 109/260 (41%), Gaps = 12/260 (4%)
Query: 433 DGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGM 492
+G L+L+TG+ + Y P+ Q F+ + ++ +G
Sbjct: 135 NGTLNLKTGRLEQHLYSDYFRYVLPYPYNPNATCQMFMKYLDRVLPDKDTQKVLAEYIGW 194
Query: 493 ALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS 552
+ K ++ + + G G +GKS +++++ G + + + SD M + +AN
Sbjct: 195 -IFTPLKLEKCLFLYGSGKNGKSVFVDIVEALLGKENISHESLSD-MCGENGDRSRAN-- 250
Query: 553 LIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612
L G + S+ N + K++ G+ ++ R Y + + + + F + N+
Sbjct: 251 ---LSGKLLNTCSDVAPN-AFSGDIFKRIASGEPISTRQLYKDVATLTDYAKMLFCL-NE 305
Query: 613 HLFVRNPDDAWWRRYIVIPF--DKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKG 670
+ + ++RR++++PF P D A+K+ + W L+G + I++
Sbjct: 306 LPKTNDKSNGYFRRFLIVPFKVQIPKPEVDPKLAEKIVSTELPGIMNWVLEGRERLITQS 365
Query: 671 LDVDIPEVCLKAKEEERQGT 690
+ +C K EE R G+
Sbjct: 366 GFTE-SSLCQKQLEEYRYGS 384
>gi|238753953|ref|ZP_04615313.1| P4-specific DNA primase [Yersinia ruckeri ATCC 29473]
gi|238707941|gb|EEQ00299.1| P4-specific DNA primase [Yersinia ruckeri ATCC 29473]
Length = 777
Score = 42.4 bits (98), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 49/234 (20%), Positives = 87/234 (37%), Gaps = 23/234 (9%)
Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLD--------LVSGY 476
+ +G ++G+ D TGQ K ++ + + + D L
Sbjct: 413 ARHLIGFRNGVFDTTTGQFSAHQKTHWLRTVNSVDYTPPKAGENLSDHAPHFWRWLTRAA 472
Query: 477 FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEAS 536
+ E + + M L Q F+ + G GGSGKS + ++ G +A
Sbjct: 473 GQQHEKQERILAALYMVLANRYDWQLFLEVTGPGGSGKSVMASIASLLAGKDNTTSATID 532
Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNT 596
+ +R ++G ++I+ + E + A IK +TGGD + Y +
Sbjct: 533 TLESSR---------ERASVVGFSLIILPD-QERWSGDGAGIKAITGGDAVAIDPKYRDA 582
Query: 597 YSES-PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK--PIANRDASFAQKL 647
YS PA V N + + RR +++PF + P RD K+
Sbjct: 583 YSTHIPAVI--LAVNNNPMQFSDRSGGVSRRRVILPFPEVIPANERDPQLLAKI 634
>gi|301116649|ref|XP_002906053.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262109353|gb|EEY67405.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 238
Score = 42.4 bits (98), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 51/107 (47%), Gaps = 5/107 (4%)
Query: 428 FLGEQDGILDLETGQKVKPT---KELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMD 484
++G +G+ DL T + + T K + + K F E + F S F EE +
Sbjct: 7 YIGFSNGVYDLSTAKFINATDVPKGIQVRKYINQRF-EHTETPLFDKYFSFQFTEEEDRE 65
Query: 485 YFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530
+ +G L + +K + I G GGSGKS L NL+K+AFG +
Sbjct: 66 FIYFLIGRCLTVLDDKFDFMLMIHGQGGSGKSLLANLVKFAFGQDQI 112
>gi|227358324|ref|ZP_03842665.1| primase [Proteus mirabilis ATCC 29906]
gi|227161660|gb|EEI46697.1| primase [Proteus mirabilis ATCC 29906]
Length = 775
Score = 42.4 bits (98), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 87/224 (38%), Gaps = 25/224 (11%)
Query: 428 FLGEQDGILDLETGQKVKP-TKELYITKSTGTPFVEGEPSQEFLDLVSGYFE-------- 478
+G +G+ DL T Q+ KP E ++ G F E ++ +++
Sbjct: 412 LIGFSNGVYDLST-QQFKPHAPENWLLNHNGIVFTAPESNENLKQHAPSFYKWLSHSAGN 470
Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFG--NQYVINAEAS 536
EE M+ + M L Q FI + G GGSGKS ++ G N N +A
Sbjct: 471 DEEKMNRINAGLFMILANRYDWQLFIEVTGEGGSGKSVFTSIATLLAGAHNTASGNMKAL 530
Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNT 596
D + R GK SLI L ++ + E A IK +TGGD + Y
Sbjct: 531 DEARGRYQFVGK---SLITL-PDQVKYVGE--------GAGIKAITGGDLIEVDGKYEKQ 578
Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD 640
+S + N+ + + RR ++ F+ P+ D
Sbjct: 579 FSTIIKAVV-LATNNEPMSFTERNGGIARRRVIFSFNTPVKEND 621
>gi|300724899|ref|YP_003714224.1| putative phage primase [Xenorhabdus nematophila ATCC 19061]
gi|297631441|emb|CBJ92138.1| putative phage primase [Xenorhabdus nematophila ATCC 19061]
Length = 804
Score = 42.4 bits (98), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 54/237 (22%), Positives = 89/237 (37%), Gaps = 25/237 (10%)
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF----- 477
+ S +G +G+ L T Q E ++ G F + + D ++
Sbjct: 436 EQRSDLIGFSNGVYALSTQQFTPHQPEHWLMNHNGIEFTQPAIGENLSDHAPDFYRWLSH 495
Query: 478 ---ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFG--NQYVIN 532
++E M+ + M L Q FI + G GGSGKS + G N N
Sbjct: 496 AAGQNENKMNRIKAALFMILANRYDWQLFIEVTGEGGSGKSVFTYIATLLAGEHNTASGN 555
Query: 533 AEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLN 592
A D + R GK SLI L ++ + E A IK +TGGD +
Sbjct: 556 MRALDEARGRYQFVGK---SLITL-PDQVKYVGE--------GAGIKAITGGDLIEVDGK 603
Query: 593 YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKL 647
Y +S + N+ + + RR ++ PF+ P+ + +D +K+
Sbjct: 604 YEKQFSTIIKAVV-LATNNEPMSFTERNGGIARRRVIFPFNIPVKESEKDPQLPEKI 659
>gi|238797084|ref|ZP_04640587.1| P4-specific DNA primase [Yersinia mollaretii ATCC 43969]
gi|238719129|gb|EEQ10942.1| P4-specific DNA primase [Yersinia mollaretii ATCC 43969]
Length = 777
Score = 42.0 bits (97), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 50/234 (21%), Positives = 89/234 (38%), Gaps = 23/234 (9%)
Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLD--------LVSGY 476
+ +G ++G+ D TGQ K ++ + + + D L
Sbjct: 413 ARHLIGFRNGVFDTTTGQFSAHQKTHWLRTVNSVDYTPPKAGENLSDHAPHFWRWLTRAA 472
Query: 477 FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEAS 536
+ E + + M L Q F+ + G GGSGKS + ++ G +A
Sbjct: 473 GQQHEKQERILAALYMVLANRYDWQLFLEVTGPGGSGKSVMASIASLLAGKDNTTSATID 532
Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNT 596
+ E+ + S++ G ++I+ + E + A IK +TGGD + Y +
Sbjct: 533 TL------ESSRERASVV---GFSLIILPD-QERWSGDGAGIKAITGGDAVAIDPKYRDA 582
Query: 597 YSES-PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK--PIANRDASFAQKL 647
YS PA V N + + RR +++PF + P RD K+
Sbjct: 583 YSTHIPAVI--LAVNNNPMQFSDRSGGVSRRRVILPFPEVIPANERDPLLLAKI 634
>gi|300954445|ref|ZP_07166897.1| nucleoside triphosphatase, D5 family [Escherichia coli MS 175-1]
gi|300318595|gb|EFJ68379.1| nucleoside triphosphatase, D5 family [Escherichia coli MS 175-1]
Length = 605
Score = 42.0 bits (97), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 52/241 (21%), Positives = 94/241 (39%), Gaps = 21/241 (8%)
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPF---VEGEPSQEFLD-----LVS 474
+++ +G +G+ D TG + K ++ ++ PF EGE L
Sbjct: 233 NTARNLIGFSNGVFDTRTGNFRQHNKNDWLLIASELPFSPPAEGETLATHAPNFWKWLRR 292
Query: 475 GYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
E++ D + M L Q FI + G GGSGKS + + G ++A
Sbjct: 293 SVAENDRKADRVLAALFMVLANRYDWQLFIEVTGPGGSGKSVMAEICTMLAGKANTVSAS 352
Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
+ R +L+ +G ++I+ + + A IK +TGGD + +
Sbjct: 353 MKALEDAR-------ERALV--VGFSLIIMPDMTRYAG-DGAGIKAITGGDKVAIDPKHK 402
Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK--PIANRDASFAQKLETKYT 652
YS + V N + + RR ++ F + P RD+ A+K+E +
Sbjct: 403 APYSTRIPAVV-LAVNNNAMSFSDRSGGISRRRVIFNFSEVVPENERDSMLAEKIEGELA 461
Query: 653 L 653
+
Sbjct: 462 V 462
>gi|300723481|ref|YP_003712786.1| putative phage primase [Xenorhabdus nematophila ATCC 19061]
gi|297630003|emb|CBJ90638.1| putative phage primase [Xenorhabdus nematophila ATCC 19061]
Length = 808
Score = 42.0 bits (97), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 54/232 (23%), Positives = 86/232 (37%), Gaps = 25/232 (10%)
Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF--------ES 479
+G +G+ L T Q E ++ G F + D ++ ++
Sbjct: 441 LIGFSNGVYALSTQQFTPHQPEHWLMNHNGIVFTLPAVGENLPDHAPDFYRWLSHAAGQN 500
Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFG--NQYVINAEASD 537
E MD + M L Q FI + G GGSGKS + G N N A D
Sbjct: 501 ENKMDRIKAALFMILANRYDWQLFIEVTGEGGSGKSVFTYIATLLAGEHNTASGNMRALD 560
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
+ R GK SLI L ++ + E A IK +TGGD + Y +
Sbjct: 561 EARGRYQFVGK---SLITL-PDQVKYVGE--------GAGIKAITGGDLIEVDGKYEKQF 608
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKL 647
S + N+ + + RR ++ PF+ P+ + +D +K+
Sbjct: 609 STVIKAVV-LATNNEPMSFTERNGGIARRRVIFPFNIPVKESEKDPQLPEKI 659
>gi|579075|emb|CAA53906.1| unnamed protein product [Streptomyces phage phiC31]
Length = 202
Score = 42.0 bits (97), Expect = 0.42, Method: Composition-based stats.
Identities = 38/148 (25%), Positives = 66/148 (44%), Gaps = 8/148 (5%)
Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637
+K++TG D +TAR ++ +P +F + N ++ D+ WRR +IPF + A
Sbjct: 2 LKRVTGKDKVTARFLRQEFFTFAP-TFLIMLATNHKPKFKSQDEGLWRRVKLIPFVRYFA 60
Query: 638 --NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQA 695
RD +KL + + W ++G + + GL PE A E R +D
Sbjct: 61 PEERDYDLDRKLRAE-SAGIVAWAVRGAVEWYANGL--GDPESISTATREYRATSDALAG 117
Query: 696 WIDDCCDIGENLWEESHSLAKSYSEYRE 723
+ D ++ S A +Y+ YR+
Sbjct: 118 FFPGVLDAADD--SAIVSGADAYNSYRD 143
>gi|193070938|ref|ZP_03051869.1| nucleoside triphosphatase, D5 family [Escherichia coli E110019]
gi|192955792|gb|EDV86264.1| nucleoside triphosphatase, D5 family [Escherichia coli E110019]
Length = 783
Score = 42.0 bits (97), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 62/261 (23%), Positives = 99/261 (37%), Gaps = 29/261 (11%)
Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTG----TPFVEGEPSQ-------EFLDLV 473
S +G ++G+LD + G P + ++ TP V+GE + +LD
Sbjct: 416 SRCLIGFRNGVLDTQNG-TFHPHSPSHWMRTLCDVDFTPPVDGETLETHAPAFWRWLDRA 474
Query: 474 SGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
+G E D + M L Q F+ + G GGSGKS + + G +A
Sbjct: 475 AG--GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSA 532
Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593
+ R A SLIRL E + A +K +TGGD ++ Y
Sbjct: 533 TIETLESPR-ERAALTGFSLIRL---------PDQEKWSGDGAGLKAITGGDAVSVDPKY 582
Query: 594 GNTYSES-PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETK 650
+ YS PA V N + + RR ++I F + IA RD K+ +
Sbjct: 583 RDAYSTHIPAVI--LAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITRE 640
Query: 651 YTLEAKKWFLKGVKAYISKGL 671
+ + K +++ L
Sbjct: 641 LAVIVRHLMQKFSDPMLARSL 661
>gi|312945751|gb|ADR26578.1| putative DNA primase from prophage [Escherichia coli O83:H1 str.
NRG 857C]
Length = 606
Score = 42.0 bits (97), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 52/241 (21%), Positives = 94/241 (39%), Gaps = 21/241 (8%)
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPF---VEGEPSQEFLD-----LVS 474
+++ +G +G+ D TG + K ++ ++ PF EGE L
Sbjct: 234 NTARNLIGFSNGVFDTRTGNFREHNKNDWLLIASELPFSPPAEGETLATHAPNFWKWLRR 293
Query: 475 GYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
E++ D + M L Q FI + G GGSGKS + + G ++A
Sbjct: 294 SVAENDRKADRVLAALFMVLANRYDWQLFIEVTGPGGSGKSVMAEICTMLAGKANTVSAS 353
Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
+ R +L+ +G ++I+ + + A IK +TGGD + +
Sbjct: 354 MKALEDAR-------ERALV--VGFSLIIMPDMTRYAG-DGAGIKAITGGDKVAIDPKHK 403
Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK--PIANRDASFAQKLETKYT 652
YS + V N + + RR ++ F + P RD+ A+K+E +
Sbjct: 404 APYSTRIPAVV-LAVNNNAMSFSDRSGGISRRRVIFNFSEVVPENERDSMLAEKIEGELA 462
Query: 653 L 653
+
Sbjct: 463 V 463
>gi|330910991|gb|EGH39501.1| DNA primase , phage-associated / Replicative helicase RepA
[Escherichia coli AA86]
Length = 606
Score = 41.6 bits (96), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 52/241 (21%), Positives = 94/241 (39%), Gaps = 21/241 (8%)
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPF---VEGEPSQEFLD-----LVS 474
+++ +G +G+ D TG + K ++ ++ PF EGE L
Sbjct: 234 NTARNLIGFSNGVFDTRTGNFREHNKNDWLLIASELPFSPPAEGETLATHAPNFWKWLRR 293
Query: 475 GYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
E++ D + M L Q FI + G GGSGKS + + G ++A
Sbjct: 294 SVAENDRKADRVLAALFMVLANRYDWQLFIEVTGPGGSGKSVMAEICTMLAGKANTVSAS 353
Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
+ R +L+ +G ++I+ + + A IK +TGGD + +
Sbjct: 354 MKALEDAR-------ERALV--VGFSLIIMPDMTRYAG-DGAGIKAITGGDKVAIDPKHK 403
Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK--PIANRDASFAQKLETKYT 652
YS + V N + + RR ++ F + P RD+ A+K+E +
Sbjct: 404 APYSTRIPAVV-LAVNNNAMSFSDRSGGISRRRVIFNFSEVVPENERDSMLAEKIEGELA 462
Query: 653 L 653
+
Sbjct: 463 V 463
>gi|238787759|ref|ZP_04631556.1| P4-specific DNA primase [Yersinia frederiksenii ATCC 33641]
gi|238724102|gb|EEQ15745.1| P4-specific DNA primase [Yersinia frederiksenii ATCC 33641]
Length = 777
Score = 41.6 bits (96), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 50/234 (21%), Positives = 89/234 (38%), Gaps = 23/234 (9%)
Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLD--------LVSGY 476
+ +G ++G+ D TGQ K ++ + + + D L
Sbjct: 413 ARHLIGFRNGVFDTTTGQFSAHQKTHWLRTVNSVDYTPPKAGENLSDHAPHFWRWLTRAA 472
Query: 477 FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEAS 536
+ E + + M L Q F+ + G GGSGKS + ++ G +A
Sbjct: 473 GQQHEKQERILAALYMVLANRYDWQLFLEVTGPGGSGKSVMASIASLLAGKDNTTSATID 532
Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNT 596
+ E+ + S++ G ++I+ + E + A IK +TGGD + Y +
Sbjct: 533 TL------ESSRERASVV---GFSLIILPD-QERWSGDGAGIKAITGGDAVAIDPKYRDA 582
Query: 597 YSES-PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK--PIANRDASFAQKL 647
YS PA V N + + RR +++PF + P RD K+
Sbjct: 583 YSTHIPAVI--LAVNNNPMQFSDRSGGVSRRRVILPFPEVIPANERDPLLLAKI 634
>gi|256021327|ref|ZP_05435192.1| P4 family phage/plasmid primase [Shigella sp. D9]
gi|332282561|ref|ZP_08394974.1| DNA primase [Shigella sp. D9]
gi|332104913|gb|EGJ08259.1| DNA primase [Shigella sp. D9]
Length = 777
Score = 41.6 bits (96), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 62/261 (23%), Positives = 99/261 (37%), Gaps = 29/261 (11%)
Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTG----TPFVEGEPSQ-------EFLDLV 473
S +G ++G+LD + G P + ++ TP V+GE + +LD
Sbjct: 410 SRCLIGFRNGVLDTQNG-TFHPHSPSHWMRTLCDVDFTPPVDGETLETHAPAFWRWLDRA 468
Query: 474 SGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
+G E D + M L Q F+ + G GGSGKS + + G +A
Sbjct: 469 AG--GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSA 526
Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593
+ R A SLIRL E + A +K +TGGD ++ Y
Sbjct: 527 TIETLESPR-ERAALTGFSLIRL---------PDQEKWSGDGAGLKAITGGDAVSVDPKY 576
Query: 594 GNTYSES-PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETK 650
+ YS PA V N + + RR ++I F + IA RD K+ +
Sbjct: 577 RDAYSTHIPAVI--LAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITRE 634
Query: 651 YTLEAKKWFLKGVKAYISKGL 671
+ + K +++ L
Sbjct: 635 LAVIVRHLMQKFSDPMLARSL 655
>gi|238027975|ref|YP_002912206.1| phage/plasmid primase P4, C-terminal [Burkholderia glumae BGR1]
gi|237877169|gb|ACR29502.1| Phage/plasmid primase P4, C-terminal [Burkholderia glumae BGR1]
Length = 519
Score = 41.6 bits (96), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 60/274 (21%), Positives = 99/274 (36%), Gaps = 35/274 (12%)
Query: 465 PSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524
P F + S + DY C G L N Q+ I + G G +GKS + ++
Sbjct: 163 PDSRFGRFIMQVQPSPAMRDYLAECFGSTLSTMN-VQKAIILEGTGANGKSLCLQILSAF 221
Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDE-INAAKIKQMTG 583
N + D N P L+ + +V +SE IN K
Sbjct: 222 HANPVAFDLSRLDGEFNTEP-----------LVHATLVTVSEAPPRKRPINENLFKAWVA 270
Query: 584 GDCMTARLNYGNTYSESPASFTP----FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR 639
D ++ N + P + P + N+ + + + RR +PF + I
Sbjct: 271 RDPVSV-----NRKNRVPLTVKPRASWVLAMNEAMGFSDMSHGFLRRIANVPFTQTIRAE 325
Query: 640 DA-SFAQKLETKYTLE---AKKWFLKGVKAYISKGL---DVDIPEVCLKAKEEERQGTDT 692
D +L T+ E A W L G+ A +G + ++PE K R+ DT
Sbjct: 326 DQIPDLDRLITENPDEMAIALDWLLAGLIALTKRGRFMSEDELPEEVRSHKVSLRKSNDT 385
Query: 693 YQAWIDDCCDIGE-----NLWEESHSLAKSYSEY 721
W D D G+ N W + + ++Y ++
Sbjct: 386 ALEWA-DVVDAGQDPAYPNQWADKVVVYRAYRDF 418
>gi|323977714|gb|EGB72800.1| phage/plasmid primase [Escherichia coli TW10509]
Length = 605
Score = 41.6 bits (96), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 52/241 (21%), Positives = 94/241 (39%), Gaps = 21/241 (8%)
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPF---VEGEPSQEFLD-----LVS 474
+++ +G +G+ D TG + K ++ ++ PF EGE L
Sbjct: 233 NTARNLIGFSNGVFDTRTGNFREHNKNDWLLIASELPFSPPAEGETLATHAPNFWKWLHR 292
Query: 475 GYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
E++ D + M L Q FI + G GGSGKS + + G ++A
Sbjct: 293 SVAENDRKADRVLAALFMVLANRYDWQLFIEVTGPGGSGKSVMAEICTMLAGKANTVSAS 352
Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
+ R +L+ +G ++I+ + + A IK +TGGD + +
Sbjct: 353 MKALEDAR-------ERALV--VGFSLIIMPDMTRYAG-DGAGIKAITGGDKVAIDPKHK 402
Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK--PIANRDASFAQKLETKYT 652
YS + V N + + RR ++ F + P RD+ A+K+E +
Sbjct: 403 APYSTRIPAVV-LAVNNNAMSFSDRSGGISRRRVIFNFSEVVPENERDSMLAEKIEGELA 461
Query: 653 L 653
+
Sbjct: 462 V 462
>gi|313112558|ref|ZP_07798221.1| phage/plasmid primase, P4 family protein [Faecalibacterium cf.
prausnitzii KLE1255]
gi|295103823|emb|CBL01367.1| phage/plasmid primase, P4 family, C-terminal domain
[Faecalibacterium prausnitzii SL3/3]
gi|310625124|gb|EFQ08416.1| phage/plasmid primase, P4 family protein [Faecalibacterium cf.
prausnitzii KLE1255]
Length = 448
Score = 41.6 bits (96), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 90/434 (20%), Positives = 181/434 (41%), Gaps = 48/434 (11%)
Query: 359 LVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSIT 418
++ +K+ +FD + E +++ + + ++D R + ++ AK Q L+A I + T
Sbjct: 49 MMCLKQKLFDQNGEVDED-----ALLYEVHSDLR--DFVLDNLAKKEKQVLDALRIETYT 101
Query: 419 SDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE 478
+ R + Q+G L+ V P KEL + + + ++L+ + G
Sbjct: 102 PEWKPQLDR-IHLQNGTYFLDERGFV-PEKELCLNRLPVEYQPDAPAPTKWLEFLDGLLI 159
Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538
E+++ +G L+ KAQ+ + + G GG GKS + L+K FG + + I
Sbjct: 160 PEDILT-LQEYLGYLLIPSTKAQKMLVMTGKGGEGKSRIGLLLKKLFGEA----SHSESI 214
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQ-------MTGGDCMTARL 591
++ AN + ++V++ +D++N + + +T D + +
Sbjct: 215 LRIETNRFASAN------LEYKLVMV-----DDDLNMVALPETRNIKSIVTAEDRLC--I 261
Query: 592 NYGNTYSESPASFTPFIV-PNKHLFVRNPD-DAWWRRYIVIPF-DKPIANRDASFAQKLE 648
N + + FI N +L + D D +WRR I+I D+ A D F +
Sbjct: 262 ERKNKQAVQGLLYVRFICFGNGNLVAAHDDSDGFWRRQILITVKDRDPARVDNPFLIEEL 321
Query: 649 TKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDI--GEN 706
++ W L+G+ ++ I E ++ E +D ++ + +
Sbjct: 322 SEERPGILLWMLEGLHRLLANRYQFTISERSIQNLEAAMADSDNLTQFMQATAYVRFKPD 381
Query: 707 LWEESHSLAKSYSEYREQELN--YDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKR 764
E S L ++Y+++ E L +K+ S LK G G + IE +++ R
Sbjct: 382 TEERSTYLYRAYTKWCEDNLESPVPQKKFS----QFLLKNAGKYGLTFSKHIEGKYRGFR 437
Query: 765 IIKGLKLKPAFESV 778
G+ + PAF +
Sbjct: 438 ---GVCVHPAFAAA 448
>gi|160943486|ref|ZP_02090719.1| hypothetical protein FAEPRAM212_00977 [Faecalibacterium prausnitzii
M21/2]
gi|158445165|gb|EDP22168.1| hypothetical protein FAEPRAM212_00977 [Faecalibacterium prausnitzii
M21/2]
Length = 448
Score = 41.6 bits (96), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 90/434 (20%), Positives = 181/434 (41%), Gaps = 48/434 (11%)
Query: 359 LVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSIT 418
++ +K+ +FD + E +++ + + ++D R + ++ AK Q L+A I + T
Sbjct: 49 MMCLKQKLFDQNGEVDED-----ALLYEVHSDLR--DFVLDNLAKKEKQVLDALRIETYT 101
Query: 419 SDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE 478
+ R + Q+G L+ V P KEL + + + ++L+ + G
Sbjct: 102 PEWKPQLDR-IHLQNGTYFLDERGFV-PEKELCLNRLPVEYQPDAPAPTKWLEFLDGLLI 159
Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538
E+++ +G L+ KAQ+ + + G GG GKS + L+K FG + + I
Sbjct: 160 PEDILT-LQEYLGYLLIPSTKAQKMLVMTGKGGEGKSRIGLLLKKLFGEA----SHSESI 214
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQ-------MTGGDCMTARL 591
++ AN + ++V++ +D++N + + +T D + +
Sbjct: 215 LRIETNRFASAN------LEYKLVMV-----DDDLNMVALPETRNIKSIVTAEDRLC--I 261
Query: 592 NYGNTYSESPASFTPFIV-PNKHLFVRNPD-DAWWRRYIVIPF-DKPIANRDASFAQKLE 648
N + + FI N +L + D D +WRR I+I D+ A D F +
Sbjct: 262 ERKNKQAVQGLLYVRFICFGNGNLVAAHDDSDGFWRRQILITVKDRDPARVDNPFLIEEL 321
Query: 649 TKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDI--GEN 706
++ W L+G+ ++ I E ++ E +D ++ + +
Sbjct: 322 SEERPGILLWMLEGLHRLLANRYQFTISERSIQNLEAAMADSDNLTQFMQATAYVRFKPD 381
Query: 707 LWEESHSLAKSYSEYREQELN--YDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKR 764
E S L ++Y+++ E L +K+ S LK G G + IE +++ R
Sbjct: 382 TEERSTYLYRAYTKWCEDNLESPVPQKKFS----QFLLKNAGKYGLTFSKHIEGKYRGFR 437
Query: 765 IIKGLKLKPAFESV 778
G+ + PAF +
Sbjct: 438 ---GVCVHPAFAAA 448
>gi|126659382|ref|ZP_01730517.1| hypothetical protein CY0110_15055 [Cyanothece sp. CCY0110]
gi|126619341|gb|EAZ90075.1| hypothetical protein CY0110_15055 [Cyanothece sp. CCY0110]
Length = 1044
Score = 41.2 bits (95), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 48/214 (22%), Positives = 89/214 (41%), Gaps = 24/214 (11%)
Query: 432 QDGILDLETGQKVKPTKELYITKSTG---TPFVEGEP-SQEFLDLVSGYFESEEVMDYFT 487
++G+LD+ + + + Y T S P GEP Q L+++ G E +++
Sbjct: 446 RNGVLDIARKELLPHSPTNYFTWSLPYDYNPLATGEPIKQWLLEMMQG---DESLVELIR 502
Query: 488 RCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAG 547
+ + G Q+F+ + G GG+GKSTL+ L G N + + + +
Sbjct: 503 AYLHGVVTGRADWQKFLELIGPGGTGKSTLIRLAIALVG---FSNCHVTTLKRLETSKFE 559
Query: 548 KANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP- 606
AN + R+V++++ E + +K +TG D L Y ++ F P
Sbjct: 560 TAN-----IKDKRLVLVTDA-ERYTGDVTTLKALTGEDS----LPYEKKMQQATGGFKPD 609
Query: 607 ---FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637
I N+H+ + RR I + + I+
Sbjct: 610 CLVIIAGNEHIKTADYTSGLQRRRITVGMKRKIS 643
>gi|290475667|ref|YP_003468556.1| putative phage primase [Xenorhabdus bovienii SS-2004]
gi|289174989|emb|CBJ81792.1| putative phage primase [Xenorhabdus bovienii SS-2004]
Length = 814
Score = 41.2 bits (95), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 56/238 (23%), Positives = 93/238 (39%), Gaps = 27/238 (11%)
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTK-ELYITKSTGTPFVEGEPSQEFLDLVSGYF---- 477
+ S +G +G+ +L T QK P + E ++ G F + + D ++
Sbjct: 442 EQRSDLIGFCNGVYELST-QKFTPHQPEHWLMNHNGIEFTQPAIGENLSDHAPDFYRWLS 500
Query: 478 ----ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFG--NQYVI 531
++E M+ + M L Q FI + G GGSGKS + G N
Sbjct: 501 HAAGQNENKMNRIKAALFMILANRYDWQLFIEVTGEGGSGKSVFTYIATLLAGEHNTASG 560
Query: 532 NAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARL 591
N A D + R GK SLI L ++ + E A IK +TGGD +
Sbjct: 561 NMRALDEARGRYQFVGK---SLITL-PDQVKYVGE--------GAGIKAITGGDLIEVDG 608
Query: 592 NYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKL 647
Y +S + N+ + + RR ++ PF+ P+ + +D +K+
Sbjct: 609 KYEKQFSTIIKAVV-LATNNEPMSFTERNGGIARRRVIFPFNIPVKESEKDPQLPEKI 665
>gi|257437684|ref|ZP_05613439.1| phage/plasmid primase, P4 family domain protein [Faecalibacterium
prausnitzii A2-165]
gi|257199991|gb|EEU98275.1| phage/plasmid primase, P4 family domain protein [Faecalibacterium
prausnitzii A2-165]
Length = 448
Score = 41.2 bits (95), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 90/434 (20%), Positives = 181/434 (41%), Gaps = 48/434 (11%)
Query: 359 LVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSIT 418
++ +K+ +FD + E +++ + + ++D R + ++ AK Q L+A I + T
Sbjct: 49 MMCLKQKLFDQNGEVDED-----ALLYEVHSDLR--DFVLDNLAKKEKQVLDALRIETYT 101
Query: 419 SDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE 478
+ R + Q+G L+ V P KEL + + + ++L+ + G
Sbjct: 102 PEWKPQLDR-IHLQNGTYFLDERGFV-PEKELCLNRLPVEYQPDAPAPTKWLEFLDGLLI 159
Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538
E+++ +G L+ KAQ+ + + G GG GKS + L+K FG + + I
Sbjct: 160 PEDILT-LQEYLGYLLIPSTKAQKMLVMTGKGGEGKSRIGLLLKKLFGEA----SHSESI 214
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQ-------MTGGDCMTARL 591
++ AN + ++V++ +D++N + + +T D + +
Sbjct: 215 LRIETNRFASAN------LEYKLVMV-----DDDLNMVALPETRNIKSIVTAEDRLC--I 261
Query: 592 NYGNTYSESPASFTPFIV-PNKHLFVRNPD-DAWWRRYIVIPF-DKPIANRDASFAQKLE 648
N + + FI N +L + D D +WRR I+I D+ A D F +
Sbjct: 262 ERKNKQAVQGLLYVRFICFGNGNLVAAHDDSDGFWRRQILITVKDRDPARVDNPFLIEEL 321
Query: 649 TKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDI--GEN 706
++ W L+G+ ++ I E ++ E +D ++ + +
Sbjct: 322 SEERPGILLWMLEGLHRLLANRYQFTISERSIQNLEAAMADSDNLTQFMQASAYVRFKPD 381
Query: 707 LWEESHSLAKSYSEYREQELN--YDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKR 764
E S L ++Y+++ E L +K+ S LK G G + IE +++ R
Sbjct: 382 TEERSTYLYRAYTKWCEDNLESPVPQKKFS----QFLLKNAGKYGLTFSKHIEGKYRGFR 437
Query: 765 IIKGLKLKPAFESV 778
G+ + PAF +
Sbjct: 438 ---GVCVHPAFAAA 448
>gi|62362410|ref|YP_224275.1| hypothetical protein LPPPVgp44 [Listonella phage phiHSIC]
gi|58220032|gb|AAW67544.1| putative phage protein [Listonella phage phiHSIC]
Length = 815
Score = 41.2 bits (95), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 208 REITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNY 267
++I L C + +++W+ + MA+H ET G +G ++ WS GS Y+++ ++
Sbjct: 199 QKIQDMLDCIDPDC---DYEDWLHIGMAIHDETCG--EGFDLWDAWSSNGSKYNQKEMDF 253
Query: 268 KWDTF 272
KW +F
Sbjct: 254 KWHSF 258
>gi|300941010|ref|ZP_07155532.1| toprim domain protein [Escherichia coli MS 21-1]
gi|300454249|gb|EFK17742.1| toprim domain protein [Escherichia coli MS 21-1]
Length = 500
Score = 41.2 bits (95), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 73/185 (39%), Gaps = 24/185 (12%)
Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTG----TPFVEGEPSQ-------EFLDLV 473
S R +G ++G+LD + G P + ++ TP VEGE + +LD
Sbjct: 298 SRRLIGFRNGVLDTQNG-TFHPHSPSHWMRTLCDVDFTPPVEGETLETHAPAFWRWLDRA 356
Query: 474 SGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
+G E D + M L Q F+ + G GGSGKS + + G +A
Sbjct: 357 AG--GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSA 414
Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593
+ R A SLIRL E + A +K +TGGD ++ Y
Sbjct: 415 TIETLESPR-ERAALTGFSLIRL---------PDQEKWSGDGAGLKAITGGDAVSVDPKY 464
Query: 594 GNTYS 598
+ YS
Sbjct: 465 RDAYS 469
>gi|300724280|ref|YP_003713598.1| putative phage primase [Xenorhabdus nematophila ATCC 19061]
gi|297630815|emb|CBJ91484.1| putative phage primase [Xenorhabdus nematophila ATCC 19061]
Length = 810
Score = 41.2 bits (95), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 56/238 (23%), Positives = 93/238 (39%), Gaps = 27/238 (11%)
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTK-ELYITKSTGTPFVEGEPSQEFLDLVSGYF---- 477
+ S +G +G+ +L T QK P + E ++ G F + + D ++
Sbjct: 438 EQRSDLIGFCNGVYELST-QKFTPHQPEHWLMNHNGIEFTQPAIGENLSDHAPDFYRWLS 496
Query: 478 ----ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFG--NQYVI 531
++E M+ + M L Q FI + G GGSGKS + G N
Sbjct: 497 HAAGQNENKMNRIKAALFMILANRYDWQLFIEVTGEGGSGKSVFTYIATLLAGEHNTASG 556
Query: 532 NAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARL 591
N A D + R GK SLI L ++ + E A IK +TGGD +
Sbjct: 557 NMRALDEARGRYQFVGK---SLITL-PDQVKYVGE--------GAGIKAITGGDLIEVDG 604
Query: 592 NYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKL 647
Y +S + N+ + + RR ++ PF+ P+ + +D +K+
Sbjct: 605 KYEKQFSTIIKAVV-LATNNEPMSFTERNGGIARRRVIFPFNIPVKESEKDPQLPEKI 661
>gi|153815791|ref|ZP_01968459.1| hypothetical protein RUMTOR_02036 [Ruminococcus torques ATCC 27756]
gi|145846816|gb|EDK23734.1| hypothetical protein RUMTOR_02036 [Ruminococcus torques ATCC 27756]
Length = 1354
Score = 41.2 bits (95), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 80/188 (42%), Gaps = 16/188 (8%)
Query: 445 KPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLG-GNKAQRF 503
K K+ Y +K P G+ S + + Y E+E +G + G K Q+F
Sbjct: 120 KTDKKDYASKKLKYPLEAGDLSAYNKLMSTLYSETER--QKIEWAIGSIVCGESKKLQKF 177
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQY-VINAEASDIMQNR-PPEAGKANPSLIRLMGSRI 561
+ + G G+GKST++N+I+ F Y V +A+A N EA K NP +
Sbjct: 178 MVLYGAAGTGKSTVLNIIQQLFEGYYSVFDAKALGSSSNSFALEAFKNNP---------L 228
Query: 562 VIISETNENDEI-NAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
V I + I + ++ + + MT + +TYS F F+ NK + + +
Sbjct: 229 VAIQHDGDLSRIEDNTRLNSLVSHELMTVNEKFKSTYSNRFKCFL-FMGTNKPVKITDAK 287
Query: 621 DAWWRRYI 628
RR +
Sbjct: 288 SGLIRRLV 295
>gi|157325399|ref|YP_001468818.1| gp34 [Listeria phage P35]
gi|66733404|gb|AAY53219.1| gp34 [Listeria phage P35]
Length = 634
Score = 41.2 bits (95), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 52/229 (22%), Positives = 90/229 (39%), Gaps = 30/229 (13%)
Query: 461 VEGEPSQEFLDLVSGYFESEEVMDY---FTRCVGMALLGGNKAQRFIH----IRGVGGSG 513
E E QE D ++ +E DY +G LL + +R + RG GG+G
Sbjct: 324 AEAEAVQEVDDYLNNLTGGDE--DYKKVLLEALGSTLLTDPEQKRLLAKIFIFRGNGGNG 381
Query: 514 KSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI 573
K TL+ +I G + V + + N S + + ++ + + EN I
Sbjct: 382 KGTLLTIISEILGRESVGTSSLEQL----------TNESYLYSLNGKLANLCDDVENSAI 431
Query: 574 NAAK---IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVI 630
+ K IK ++ D + R +S + + T + N L +W RR + +
Sbjct: 432 DNKKMKIIKNISTCDRIDLRKMREQAFS-ATLTCTLIMTSNHTLKSFEKGKSWKRRVMWM 490
Query: 631 PFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVC 679
P + +D F KL T L+ W A + +GL+ + + C
Sbjct: 491 PMFSEVVKKDPRFITKLTTPKALQY--WL-----ALMVEGLNRLLDQKC 532
>gi|331089475|ref|ZP_08338374.1| hypothetical protein HMPREF1025_01957 [Lachnospiraceae bacterium
3_1_46FAA]
gi|330404843|gb|EGG84381.1| hypothetical protein HMPREF1025_01957 [Lachnospiraceae bacterium
3_1_46FAA]
Length = 1352
Score = 41.2 bits (95), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 48/188 (25%), Positives = 80/188 (42%), Gaps = 16/188 (8%)
Query: 445 KPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLG-GNKAQRF 503
K K+ Y +K P G+ S + + Y E+E +G + G K Q+F
Sbjct: 120 KTDKKDYASKKLKYPLEAGDLSAYNKLMSTLYSETER--QKIEWAIGSIVCGESKKLQKF 177
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQY-VINAEASDIMQNR-PPEAGKANPSLIRLMGSRI 561
+ + G G+GKST++N+I+ F Y V +A+A N EA K NP +
Sbjct: 178 MVLYGAAGTGKSTVLNIIQQLFEGYYSVFDAKALGSSSNSFALEAFKNNP---------L 228
Query: 562 VIISETNENDEI-NAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
V I + I + ++ + + MT + +TYS F F+ NK + + +
Sbjct: 229 VAIQHDGDLSRIEDNTRLNSLVSHELMTVNEKFKSTYSNRFKCFL-FMGTNKPVKITDAK 287
Query: 621 DAWWRRYI 628
RR +
Sbjct: 288 SGLIRRLV 295
>gi|301022218|ref|ZP_07186133.1| nucleoside triphosphatase, D5 family [Escherichia coli MS 69-1]
gi|300397631|gb|EFJ81169.1| nucleoside triphosphatase, D5 family [Escherichia coli MS 69-1]
Length = 605
Score = 40.8 bits (94), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 51/241 (21%), Positives = 91/241 (37%), Gaps = 21/241 (8%)
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPF---VEGEPSQEFLD-----LVS 474
+++ +G +G+ D TG + K ++ ++ PF EGE L
Sbjct: 233 NTARNLIGFSNGVFDTRTGNFREHNKNDWLLIASELPFSPPAEGETLATHAPNFWKWLRR 292
Query: 475 GYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
E++ D + M L Q FI + G GGSGKS + + G ++A
Sbjct: 293 SVAENDRKADRVLAALFMVLANRYDWQLFIEVTGPGGSGKSVMAEICTMLAGKANTVSAS 352
Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
+ R ++G ++I+ + + A IK +TGGD + +
Sbjct: 353 MKALEDAR---------ERALVVGFSLIIMPDMTRYAG-DGAGIKAITGGDKVAIDPKHK 402
Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK--PIANRDASFAQKLETKYT 652
YS + V N + + RR ++ F + P RD A+K+E +
Sbjct: 403 APYSTRIPAVV-LAVNNNAMSFSDRSGGISRRRVIFNFSEVVPENERDPMLAEKIEGELA 461
Query: 653 L 653
+
Sbjct: 462 V 462
>gi|170680147|ref|YP_001743025.1| D5 family nucleoside triphosphatase [Escherichia coli SMS-3-5]
gi|170517865|gb|ACB16043.1| nucleoside triphosphatase, D5 family [Escherichia coli SMS-3-5]
Length = 605
Score = 40.8 bits (94), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 51/241 (21%), Positives = 91/241 (37%), Gaps = 21/241 (8%)
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPF---VEGEPSQEFLD-----LVS 474
+++ +G +G+ D TG + K ++ ++ PF EGE L
Sbjct: 233 NTARNLIGFSNGVFDTRTGNFREHNKNDWLLIASELPFSPPAEGETLATHAPNFWKWLRR 292
Query: 475 GYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
E++ D + M L Q FI + G GGSGKS + + G ++A
Sbjct: 293 SVAENDRKADRVLAALFMVLANRYDWQLFIEVTGPGGSGKSVMAEICTMLAGKANTVSAS 352
Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
+ R ++G ++I+ + + A IK +TGGD + +
Sbjct: 353 MKALEDAR---------ERALVVGFSLIIMPDMTRYAG-DGAGIKAITGGDKVAIDPKHK 402
Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK--PIANRDASFAQKLETKYT 652
YS + V N + + RR ++ F + P RD A+K+E +
Sbjct: 403 APYSTRIPAVV-LAVNNNAMSFSDRSGGISRRRVIFNFSEVVPENERDPMLAEKIEGELA 461
Query: 653 L 653
+
Sbjct: 462 V 462
>gi|150024492|ref|YP_001295318.1| hypothetical protein FP0387 [Flavobacterium psychrophilum JIP02/86]
gi|149771033|emb|CAL42500.1| Protein of unknown function [Flavobacterium psychrophilum JIP02/86]
Length = 463
Score = 40.8 bits (94), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 43/205 (20%), Positives = 94/205 (45%), Gaps = 22/205 (10%)
Query: 468 EFLDLVSGYFESEEVMDYFTRCVGMALL--GGNKAQRFIHIRGVGGSGKSTLMNLIKYAF 525
+F++ ++ +E+ + + +G + G K ++ + + G G +GKS L +I
Sbjct: 173 KFMNFLNEVLPEKELQNVLSEYLGYIFIKNGVLKLEKVLLLYGTGANGKSVLFEIICALI 232
Query: 526 GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGD 585
G + N +Q+ + G R M + ++ + N ++ + KQ+ G+
Sbjct: 233 GKHNITNYS----LQSLTDKDGYR-----RAMIANKLLNYASEINGKLEISFFKQLASGE 283
Query: 586 CMTARLNYGNTYSESPASFTPF--IVPNKHLFVRNPD--DAWWRRYIVIPFDK--PIANR 639
+ ARL YGN P T + ++ N + R+ + +A++RR+I++PF P +
Sbjct: 284 PVEARLPYGN-----PLLITDYAKLIFNCNELPRDTEQTNAFFRRFIILPFRNTIPPEKQ 338
Query: 640 DASFAQKLETKYTLEAKKWFLKGVK 664
+ A+++ W ++G+K
Sbjct: 339 NKKLAEQIINDELSGIFNWVIEGLK 363
>gi|218698910|ref|YP_002406539.1| putative DNA primase from prophage [Escherichia coli IAI39]
gi|218368896|emb|CAR16647.1| putative DNA primase from prophage (possibly fragment) [Escherichia
coli IAI39]
Length = 545
Score = 40.8 bits (94), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 52/241 (21%), Positives = 94/241 (39%), Gaps = 21/241 (8%)
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPF---VEGEPSQEFLD-----LVS 474
+++ +G +G+ D TG + K ++ ++ PF EGE L
Sbjct: 173 NTARNLIGFSNGVFDTRTGNFREHNKNDWLLIASELPFSPPAEGETLATHAPNFWKWLRR 232
Query: 475 GYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
E++ D + M L Q FI + G GGSGKS + + G ++A
Sbjct: 233 SVAENDRKADRVLAALFMVLANRYDWQLFIEVTGPGGSGKSVMAEICTMLAGKANTVSAS 292
Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
+ R +L+ +G ++I+ + + A IK +TGGD + +
Sbjct: 293 MKALEDAR-------ERALV--VGFSLIIMPDMTRYAG-DGAGIKAITGGDKVAIDPKHK 342
Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK--PIANRDASFAQKLETKYT 652
YS + V N + + RR ++ F + P RD+ A+K+E +
Sbjct: 343 APYSTRIPAVV-LAVNNNAMSFSDRSGGISRRRVIFNFSEVVPENERDSMLAEKIEGELA 401
Query: 653 L 653
+
Sbjct: 402 V 402
>gi|331673076|ref|ZP_08373850.1| bacteriophage P4 DNA primase [Escherichia coli TA280]
gi|331069763|gb|EGI41144.1| bacteriophage P4 DNA primase [Escherichia coli TA280]
Length = 610
Score = 40.8 bits (94), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 52/241 (21%), Positives = 93/241 (38%), Gaps = 21/241 (8%)
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPF---VEGEPSQEFLD-----LVS 474
+++ +G +G+ D TG + K ++ ++ PF EGE L
Sbjct: 238 NTARNLIGFSNGVFDTRTGNFREHNKNDWLLIASELPFSPPAEGETLATHAPNFWKWLRR 297
Query: 475 GYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
E++ D + M L Q FI + G GGSGKS + + G ++A
Sbjct: 298 SVAENDRKADRVLAALFMVLANRYDWQLFIEVTGPGGSGKSVMAEICTMLAGKANTVSAS 357
Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
+ R +L+ +G ++I+ + + A IK +TGGD + +
Sbjct: 358 MKALEDAR-------ERALV--VGFSLIIMPDMTRYAG-DGAGIKAITGGDKVAIDPKHK 407
Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK--PIANRDASFAQKLETKYT 652
YS + V N + + RR ++ F + P RD A+K+E +
Sbjct: 408 APYSTRIPAVV-LAVNNNAMSFSDRSGGISRRRVIFNFSEVVPENERDPMLAEKIEGELA 466
Query: 653 L 653
+
Sbjct: 467 V 467
>gi|74311430|ref|YP_309849.1| bacteriophage P4 DNA primase [Shigella sonnei Ss046]
gi|73854907|gb|AAZ87614.1| bacteriophage P4 DNA primase [Shigella sonnei Ss046]
Length = 495
Score = 40.8 bits (94), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 52/241 (21%), Positives = 93/241 (38%), Gaps = 21/241 (8%)
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPF---VEGEPSQEFLD-----LVS 474
+++ +G +G+ D TG + K ++ ++ PF EGE L
Sbjct: 233 NTARNLIGFSNGVFDTRTGNFREHNKNDWLLIASELPFSPPAEGETLATHAPNFWKWLRR 292
Query: 475 GYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
E++ D + M L Q FI + G GGSGKS + + G ++A
Sbjct: 293 SVAENDRKADRVLAVLFMVLANRYDWQLFIEVTGPGGSGKSVMAEICTMLAGKANTVSAS 352
Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
+ R +L+ +G ++I+ + + A IK +TGGD + +
Sbjct: 353 MKALEDAR-------ERALV--VGFSLIIMPDMTRYAG-DGAGIKAITGGDKVAIDPKHK 402
Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK--PIANRDASFAQKLETKYT 652
YS + V N + + RR ++ F + P RD A+K+E +
Sbjct: 403 APYSTRIPAVV-LAVNNNAMSFSDRSGGISRRRVIFNFSEVVPENERDPMLAEKIEGELA 461
Query: 653 L 653
+
Sbjct: 462 V 462
>gi|325832761|ref|ZP_08165524.1| nucleoside triphosphatase, D5 family [Eggerthella sp. HGA1]
gi|325485900|gb|EGC88361.1| nucleoside triphosphatase, D5 family [Eggerthella sp. HGA1]
Length = 596
Score = 40.8 bits (94), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 45/182 (24%), Positives = 80/182 (43%), Gaps = 23/182 (12%)
Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569
G +GK TL L++ G+ A AS P +NP ++ + II++ N+
Sbjct: 294 GNNGKGTLCTLMRNLLGD----GAWAS------LPLKAFSNPFMLEPLSRVSAIITDEND 343
Query: 570 NDEI--NAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVP--NKHLFVRNPDDAWWR 625
+AA +K + D + + S F F+V N+ +R+ ++ +R
Sbjct: 344 TGTFVDDAAALKSIITHDPFLMDRKFKDPRS---VLFNGFMVQCVNELPKLRDKSESLYR 400
Query: 626 RYIVIPFDKPIANRDASFAQK--LETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAK 683
R +VIPF+K R+ + + L+ K LE + L Y ++D+P+ C+
Sbjct: 401 RLLVIPFEKRFEGRERKYIKDDYLKRKDVLEYVLYKLLATTDY----YELDVPQTCIDML 456
Query: 684 EE 685
EE
Sbjct: 457 EE 458
>gi|254455145|ref|ZP_05068580.1| conserved hypothetical protein [Octadecabacter antarcticus 238]
gi|198263555|gb|EDY87827.1| conserved hypothetical protein [Octadecabacter antarcticus 238]
Length = 464
Score = 40.8 bits (94), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 77/174 (44%), Gaps = 13/174 (7%)
Query: 461 VEGEPSQEFL--DLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLM 518
V+ +P+ EFL + + + E + F + +L + +RG G+GK T+
Sbjct: 165 VQEDPTNEFLLDGIANRTPDRERFIKEFELWLAFSLFSDQRPMWGPVLRGGHGTGKGTIA 224
Query: 519 NLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKI 578
N I F A AS+ +Q P K + + L +++ E N+ ++ ++
Sbjct: 225 NQILKPF-------AGASNYVQILPHNL-KGDHAAQLLTERLMIVFDEVNDRGQVFYDRL 276
Query: 579 KQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF 632
K MT + + Y++ P F+ ++ N+ + + P+ RR++V P+
Sbjct: 277 KNMTTEPTLAVNPKHLAPYTDEPV-FSVVVLSNEEVPMSYPEGE--RRWLVSPY 327
>gi|323935654|gb|EGB31971.1| phage/plasmid primase [Escherichia coli E1520]
Length = 591
Score = 40.8 bits (94), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 52/241 (21%), Positives = 93/241 (38%), Gaps = 21/241 (8%)
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPF---VEGEPSQEFLD-----LVS 474
+++ +G +G+ D TG + K ++ ++ PF EGE L
Sbjct: 219 NTARNLIGFSNGVFDTRTGNFREHNKNDWLLIASELPFSPPAEGETLATHAPNFWKWLRR 278
Query: 475 GYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
E++ D + M L Q FI + G GGSGKS + + G ++A
Sbjct: 279 SVAENDRKADRVLAALFMVLANRYDWQLFIEVTGPGGSGKSVMAEICTMLAGKANTVSAS 338
Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
+ R +L+ +G ++I+ + + A IK +TGGD + +
Sbjct: 339 MKALEDAR-------ERALV--VGFSLIIMPDMTRYAG-DGAGIKAITGGDKVAIDPKHK 388
Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK--PIANRDASFAQKLETKYT 652
YS + V N + + RR ++ F + P RD A+K+E +
Sbjct: 389 APYSTRIPAVV-LAVNNNAMSFSDRSGGISRRRVIFNFSEVVPENERDPMLAEKIEGELA 447
Query: 653 L 653
+
Sbjct: 448 V 448
>gi|156932824|ref|YP_001436740.1| hypothetical protein ESA_00620 [Cronobacter sakazakii ATCC BAA-894]
gi|156531078|gb|ABU75904.1| hypothetical protein ESA_00620 [Cronobacter sakazakii ATCC BAA-894]
Length = 771
Score = 40.8 bits (94), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 49/244 (20%), Positives = 90/244 (36%), Gaps = 35/244 (14%)
Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYF 486
R +G ++G+ D TG +E ++ + P + + +++ +
Sbjct: 410 RLIGFRNGVFDTVTGTFGPHRRENWLRTVNSVDYTAPRPEENLKEHAPSFWQ------WL 463
Query: 487 TRCVG--------------MALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532
TR G M L Q F+ + G GGSGKS + ++ G +
Sbjct: 464 TRAAGRSHDKQERILAALFMVLANRYDWQMFLEVTGPGGSGKSVMASIATLLAGKDNTTS 523
Query: 533 AEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLN 592
A + +R ++G ++I+ + E + A IK +TGGD +
Sbjct: 524 ATIDTLESSR---------ERASVVGYSLIILPD-QEKWSGDGAGIKAITGGDAVAIDPK 573
Query: 593 YGNTYSES-PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK--PIANRDASFAQKLET 649
Y + YS PA V N + + RR +++ F + P RD K+
Sbjct: 574 YRDAYSTHIPAVI--LAVNNNPMRFSDRSGGVSRRRVILTFPEVIPAKERDPKLLDKISA 631
Query: 650 KYTL 653
+ +
Sbjct: 632 ELAV 635
>gi|23012376|ref|ZP_00052477.1| hypothetical protein Magn03006897 [Magnetospirillum magnetotacticum
MS-1]
Length = 543
Score = 40.8 bits (94), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 69/166 (41%), Gaps = 12/166 (7%)
Query: 44 EKIDKLPACGFGFVCGVGEQPLYAFDIDSKD-EKTANTFKDTFEILHGTPIVRIGQKPKI 102
E + P+ + G A D+D D + + + IL TP R+G+ P+I
Sbjct: 96 ELVTFCPSHNVAGILGPSSAHTCAIDVDVGDLDLSLAIVERADSILGYTPFRRVGRDPRI 155
Query: 103 LIPFRMNKEG-------IKKKKT-TESTQGHL-DILGCGQYFVAYNIHPKTKKEYTWT-T 152
++ +R I++KK + +GH+ +IL G + +H KT K + W
Sbjct: 156 ILIYREAGAATAKSDALIRQKKLWLQGPEGHMIEILARGAPVTFFGLHHKTGKYFLWLDR 215
Query: 153 PPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWT 198
PH E+ ++ + ++ + PL + ++TWT
Sbjct: 216 SPHVAPPEEAREVTRDQIDEFLDAVNALR-PLKAGTGRLAMAETWT 260
>gi|229106917|ref|ZP_04237019.1| Primase [Bacillus cereus Rock3-28]
gi|228676527|gb|EEL31271.1| Primase [Bacillus cereus Rock3-28]
Length = 519
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/158 (19%), Positives = 66/158 (41%), Gaps = 10/158 (6%)
Query: 478 ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
++EE++ +G L + ++ ++ G G +GKS L NL+ G+ V + S
Sbjct: 231 DNEELIKVHQELLGYWLTTETQCEKAVYYYGRGANGKSVLANLVSILVGSGNVSSVPLSQ 290
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETN-ENDEINAAKIKQMTGGDCMTARLNYGNT 596
+N E ++G + I +E + +N K + GD +T + Y +
Sbjct: 291 FSKNFGLEG---------IIGKTLNIAAENEMQGSRLNTEAFKSIVSGDGITINIKYRSP 341
Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK 634
+ + N+ + ++R+ ++IPF +
Sbjct: 342 IVNYKSKCRLLFLGNELPDTTDLTQGYFRKLVIIPFKR 379
>gi|307591304|ref|YP_003900103.1| phage/plasmid primase, P4 family [Cyanothece sp. PCC 7822]
gi|306986158|gb|ADN18037.1| phage/plasmid primase, P4 family [Cyanothece sp. PCC 7822]
Length = 999
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 41/200 (20%), Positives = 88/200 (44%), Gaps = 18/200 (9%)
Query: 393 RQNVEENSKAKSTAQSLEAGSIFSITSDLL----DSSSRFLGEQDGILDLETGQKVKPTK 448
RQ ++E ++ + + + G + + L D + L +G+ +LETG+ +
Sbjct: 529 RQQLDEKNQRPTYSSNFVTGIETLLKAHLAVRGWDETEGLLPFNNGVKNLETGEFSPHSP 588
Query: 449 ELYIT---KSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIH 505
+T P EP ++L +++ E+++ + + + Q ++
Sbjct: 589 GFRLTWCLPYNYDPLATCEPIVDWLKVMTK--GDEQIIQFIRAHLNAVVTSRVDIQSYLE 646
Query: 506 IRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIIS 565
+ G GG+GK T+ L G++ I+ ++ +NR A RL +R+V+I+
Sbjct: 647 LIGPGGTGKGTITRLATALIGDRNTISTTLRNLEENRFDTA--------RLYNARLVVIT 698
Query: 566 ETNENDEINAAKIKQMTGGD 585
+ E + + +K +TG D
Sbjct: 699 DA-EKWGGDVSVLKALTGQD 717
>gi|260855418|ref|YP_003229309.1| putative DNA primase [Escherichia coli O26:H11 str. 11368]
gi|257754067|dbj|BAI25569.1| putative DNA primase [Escherichia coli O26:H11 str. 11368]
Length = 605
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 52/241 (21%), Positives = 93/241 (38%), Gaps = 21/241 (8%)
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPF---VEGEPSQEFLD-----LVS 474
+++ +G +G+ D TG + K ++ ++ PF EGE L
Sbjct: 233 NTARNLIGFSNGVFDTRTGDFREHNKNDWLLIASELPFSPPAEGETLATHAPNFWKWLRR 292
Query: 475 GYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
E++ D + M L Q FI + G GGSGKS + + G ++A
Sbjct: 293 SVAENDRKADRVLAALFMVLANRYDWQLFIEVTGPGGSGKSVMAEICTMLAGKANTVSAS 352
Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
+ R +L+ +G ++I+ + + A IK +TGGD + +
Sbjct: 353 MKALEDAR-------ERALV--VGFSLIIMPDMTRYAG-DGAGIKAITGGDKVAIDPKHK 402
Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK--PIANRDASFAQKLETKYT 652
YS + V N + + RR ++ F + P RD A+K+E +
Sbjct: 403 APYSTRIQAVV-LAVNNNAMSFSDRSGGISRRRVIFNFSEVVPENERDPMLAEKIEGELA 461
Query: 653 L 653
+
Sbjct: 462 V 462
>gi|168229313|ref|YP_001686834.1| orf40 [Streptococcus phage 858]
gi|155241708|gb|ABT18028.1| orf40 [Streptococcus phage 858]
Length = 514
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 66/323 (20%), Positives = 138/323 (42%), Gaps = 43/323 (13%)
Query: 422 LDSSSRFLGEQDGILDLETGQKVKPTKELYITKST---------GTPFVEG-EPSQEFLD 471
+ +RF+ ++GI D + + +KP ++ ST +P + G + LD
Sbjct: 153 FEEHNRFILVKNGIYD-KKERILKPFTHEFVAFSTIATSYNPLAESPTINGWDVDSWLLD 211
Query: 472 LVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVI 531
L++G ++++ + + +L G ++ I G G GK T+ LI G + V
Sbjct: 212 LMNG---DKDLVKLIWQVISASLNGNYSYRKSIWFVGEGNDGKGTVQQLITNLVGIKNVA 268
Query: 532 NAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISET------NENDEINAAKIKQMTGGD 585
+ + + SL + G ++I + +E+ N+ +TG
Sbjct: 269 TLKLNQFSERF---------SLSIIEGKTVIIGDDVQAGIYVDESSNFNSV----VTGEP 315
Query: 586 CMTARLN---YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDAS 642
+ N Y + ++ T N+ +N + +RR+++IPF K ++++ +
Sbjct: 316 VLVEEKNKQPYTTVFKKTVIQST-----NELPRFKNKTNGTYRRFVIIPFKKSFSSKEDN 370
Query: 643 FAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCD 702
+A K + E ++ LK KA D P+ ++A E+ ++ DT ++++ + D
Sbjct: 371 WAIKEDYINRKEVLEYVLK--KALEMSFTRFDEPKASIEALEDFKESNDTVKSFVVEWFD 428
Query: 703 IGENLWEESHSLAKSYSEYREQE 725
E+ S L Y E+ ++E
Sbjct: 429 KFESTRLPSRFLWWLYQEWCKEE 451
>gi|113460678|ref|YP_718744.1| phage DNA primase-like protein [Haemophilus somnus 129PT]
gi|112822721|gb|ABI24810.1| phage DNA primase-like protein [Haemophilus somnus 129PT]
Length = 636
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 59/243 (24%), Positives = 96/243 (39%), Gaps = 44/243 (18%)
Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGE-PSQEF---LDLVSGYFESEEV 482
+FL ++G+L+ T + KE Y+T ++E + P+ F LD +S +S E
Sbjct: 271 QFLAFKNGVLNKRTLAFLPHKKEYYLTAINPCDYLETQTPTPNFDKWLDFISN--DSIER 328
Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFG--NQYVINAE------ 534
+ M L + Q + G GSGKST +N+ K G N I+ E
Sbjct: 329 KKALLAALYMILNNRSDWQLTLEFIGEPGSGKSTFLNVAKMLSGDANHVAIDLETLQRDS 388
Query: 535 -ASDIMQNR----PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTA 589
D++ N+ P+ G R +G V +K ++GGD +
Sbjct: 389 KTRDMLLNKTFLYAPDQG-------RYIGESSV---------------LKAISGGDEILV 426
Query: 590 RLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKL 647
T+S + I N +N RR +V PF K I + RD +K+
Sbjct: 427 NPKGKKTFSARINAIIA-ICSNTLPIYKNDGGGMERRRVVFPFYKAIDDSARDDKLTEKI 485
Query: 648 ETK 650
+ +
Sbjct: 486 QAE 488
>gi|293400042|ref|ZP_06644188.1| putative nucleoside triphosphatase, D5 family [Erysipelotrichaceae
bacterium 5_2_54FAA]
gi|291306442|gb|EFE47685.1| putative nucleoside triphosphatase, D5 family [Erysipelotrichaceae
bacterium 5_2_54FAA]
Length = 628
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 54/254 (21%), Positives = 107/254 (42%), Gaps = 19/254 (7%)
Query: 396 VEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKS 455
VE+ S K++ + + I + S + ++GILD+ TG +K ++ + +T
Sbjct: 263 VEQISSLKTSQRKEVLNHLLLICDEAELSPPHLIPFRNGILDVLTGDLLKYSESIIVTNK 322
Query: 456 TGTPF---VEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNK---AQRFIHIRGV 509
F E + + +D +S +E+ + +G N + FI + G
Sbjct: 323 IPWDFNINAYSELADDLMDRISC--NDKEIRNILEEVIGSCFYRSNTLAGGKSFI-LTGT 379
Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569
G +GKST +++I GN N A D M+N A S +RL + + +
Sbjct: 380 GSNGKSTFISIINTILGNN---NISAID-MKNL-----DAKFSTVRLYKKLANLGDDISG 430
Query: 570 NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIV 629
+ + + K++ GD + A + +P F N+ +++ A RR+++
Sbjct: 431 EFKSDTSTFKKIVTGDKVEAEEKGQPKFEFNPYCKLIF-SANEIPRMKDETGAAQRRFMI 489
Query: 630 IPFDKPIANRDASF 643
+PF+ + D +
Sbjct: 490 VPFNATFSENDDGY 503
>gi|168702227|ref|ZP_02734504.1| Phage/plasmid primase P4-like protein [Gemmata obscuriglobus UQM
2246]
Length = 913
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 44/212 (20%), Positives = 85/212 (40%), Gaps = 20/212 (9%)
Query: 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSR 560
Q+F + G G +GKST + +++ G+ + P E +L +G
Sbjct: 622 QQFFVLTGEGSNGKSTFLAVLRALIGDHNYASV---------PLEEFGERFALGVTLGKL 672
Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
+ ++E E D++ AK+K G D M+ S P T ++ + + R D
Sbjct: 673 VNAVAEVGELDKVAEAKLKSFVGADLMSFDRKNKAPISARP---TARLLLSTNTLPRFAD 729
Query: 621 --DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAK-----KWFLKGVKAYISKGLDV 673
+ WRRY ++PF I + + + + W L G+ +G
Sbjct: 730 RSEGVWRRYQLVPFTTVITDGEKVHGMSDPGWWIASGELPGVLNWALAGLHRLYQQG-GF 788
Query: 674 DIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE 705
+V AK E R+ + ++ +++D + +
Sbjct: 789 SSSKVGETAKAEHREICNPHRQFLEDHLQLAD 820
>gi|312901365|ref|ZP_07760645.1| phage/plasmid primase, P4 family protein [Enterococcus faecalis
TX0470]
gi|311291528|gb|EFQ70084.1| phage/plasmid primase, P4 family protein [Enterococcus faecalis
TX0470]
Length = 619
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 56/268 (20%), Positives = 104/268 (38%), Gaps = 51/268 (19%)
Query: 492 MALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANP 551
+ + G + F + G +GKST + ++ N+ D+ N E
Sbjct: 357 ILMTAGFPHKVFFLVGSSGANGKSTFLEML----------NSFIGDLGLNLALEQFNDQT 406
Query: 552 SLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPN 611
S++ L G + N D+I+A +++ + + GNT P P+ + N
Sbjct: 407 SVMELEGKLV------NIGDDIDAGYMEKSMNFKTLAS----GNTIMVRPIYSKPYKLKN 456
Query: 612 KHLFV---------RNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWF--- 659
K + ++ RR ++IP + + D +KL + AK +
Sbjct: 457 KATLIFTANEMPTFKDKSGGIARRVVIIPCENKVKKADPKIDEKLSSD---NAKSYLLNL 513
Query: 660 -LKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENL----------- 707
LK ++ I+ G + E K EE +D+ +I C I EN+
Sbjct: 514 ALKAMERIINNGGQLSSSETVAKVTEEYFVESDSILTFIHQCG-IDENMTTKGVYDEYLK 572
Query: 708 -WEESHSLAKSYSEY--REQELNYDRKR 732
EES S + +++ R + L Y+++R
Sbjct: 573 TCEESGSKPYTQTKFTQRLKSLGYEKER 600
>gi|432620|emb|CAA53920.1| unnamed protein product [Streptomyces phage phiC31]
Length = 519
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 68/155 (43%), Gaps = 8/155 (5%)
Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGT---PFVEGEPSQEFLDLV 473
+ ++ D+++ L +G++DL TG+ K +T S P + ++FL +
Sbjct: 361 VEAEEFDANAHLLSFANGVVDLRTGKLRAHDKGDMLTVSLPIEYDPNAQAPRWEQFLQEI 420
Query: 474 SGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
+ + +++ Y R VG + G Q F + G G +GKS + FG +
Sbjct: 421 --FPNNADLVGYMRRLVGYGITGNTSEQCFAVLWGKGANGKSVFTETLTDVFGR--ITKT 476
Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN 568
+++ G N L L GSR+V+ SE +
Sbjct: 477 TPFATFEDKGNGGGIPN-DLAALRGSRLVMASEAS 510
>gi|331664205|ref|ZP_08365111.1| bacteriophage P4 DNA primase [Escherichia coli TA143]
gi|331058136|gb|EGI30117.1| bacteriophage P4 DNA primase [Escherichia coli TA143]
Length = 591
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 52/241 (21%), Positives = 92/241 (38%), Gaps = 21/241 (8%)
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPF---VEGEPSQEFLD-----LVS 474
+++ +G +G+ D TG K ++ ++ PF EGE L
Sbjct: 219 NTARNLIGFSNGVFDTRTGNFRGHNKNDWLLIASELPFSPPAEGETLATHAPNFWKWLRR 278
Query: 475 GYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
E++ D + M L Q FI + G GGSGKS + + G ++A
Sbjct: 279 SVAENDRKADRVLAALFMVLANRYDWQLFIEVTGPGGSGKSVMAEICTMLAGKANTVSAS 338
Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
+ R +L+ +G ++I+ + + A IK +TGGD + +
Sbjct: 339 MKALEDAR-------ERALV--VGFSLIIMPDMTRYAG-DGAGIKAITGGDKVAIDPKHK 388
Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK--PIANRDASFAQKLETKYT 652
YS + V N + + RR ++ F + P RD A+K+E +
Sbjct: 389 APYSTRIPAVV-LAVNNNAMSFSDRSGGISRRRVIFNFSEVVPENERDPMLAEKIEGELA 447
Query: 653 L 653
+
Sbjct: 448 V 448
>gi|21226253|ref|NP_632175.1| hypothetical protein MM_0151 [Methanosarcina mazei Go1]
gi|20904491|gb|AAM29847.1| conserved protein [Methanosarcina mazei Go1]
Length = 628
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 68/311 (21%), Positives = 131/311 (42%), Gaps = 38/311 (12%)
Query: 433 DGILDLETGQKVKPTKE-LYITK-------STGTPFVEGEPSQEFLDLVSGYFE-SEEVM 483
+G+LD+ T + + E + +TK S TP +F+++++ F+ SEE +
Sbjct: 233 NGVLDINTMELSDYSPETVLLTKFPRDYNPSAATP-------SKFMEMLNTTFDGSEEQI 285
Query: 484 DYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ---YVINAEASDIMQ 540
G L + + G G +GK+TL+N++ G + ++ N D+ +
Sbjct: 286 KLVQEMFGYCFLRSYFLEVIFFLIGNGRNGKTTLLNILGALLGGEESGHISNLSFKDLSE 345
Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600
K L L G I +T ++ IK++TG D + AR Y ++++
Sbjct: 346 ------PKNENMLCDLYGRYANICGDTGKHKIKETDYIKKVTGNDFVRARKLYKDSFNFK 399
Query: 601 PASFTPFIVP-NKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQK-LETKYTLEAKK- 657
SF I+ N+ V + D + RR +I F+ D + A K +E + T + ++
Sbjct: 400 --SFAKVILAFNQLPEVDDFSDGFKRRIRIIEFNHKF--EDGAGANKNIEAEITGDEEEM 455
Query: 658 -----WFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESH 712
W ++G+K + D + + E R+ ++ ++ +C +
Sbjct: 456 EGIFLWAMEGLKRILENNSFSDKRSIVSRGMEYARK-SNPMHYFVRECIVESPGHFVNKA 514
Query: 713 SLAKSYSEYRE 723
L + Y EY E
Sbjct: 515 DLIEKYVEYAE 525
>gi|168756423|ref|ZP_02781430.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC4401]
gi|168770139|ref|ZP_02795146.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC4486]
gi|227883824|ref|ZP_04001629.1| bacteriophage P4 DNA primase [Escherichia coli 83972]
gi|189356437|gb|EDU74856.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC4401]
gi|189360975|gb|EDU79394.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC4486]
gi|227839102|gb|EEJ49568.1| bacteriophage P4 DNA primase [Escherichia coli 83972]
gi|307555753|gb|ADN48528.1| nucleoside triphosphatase [Escherichia coli ABU 83972]
Length = 604
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 50/241 (20%), Positives = 91/241 (37%), Gaps = 21/241 (8%)
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPF---VEGEPSQEFLD-----LVS 474
+++ +G +G+ D TG + K ++ ++ PF EGE L
Sbjct: 232 NTARNLIGFSNGVFDTRTGNFREHNKNDWLLIASELPFSPPAEGETLATHAPNFWKWLRR 291
Query: 475 GYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
E++ D + M L Q F+ + G GGSGKS + + G ++A
Sbjct: 292 SVAENDRKADRVLAALFMVLANRYDWQLFLEVTGPGGSGKSVMAEICTMLAGKANTVSAS 351
Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
+ R ++G ++I+ + + A IK +TGGD + +
Sbjct: 352 MKALEDAR---------ERALVVGFSLIIMPDMTRYAG-DGAGIKAITGGDKVAIDPKHK 401
Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK--PIANRDASFAQKLETKYT 652
YS + V N + + RR ++ F + P RD A+K+E +
Sbjct: 402 APYSTRIQAVV-LAVNNNAMSFSDRSGGISRRRVIFNFSEVVPENERDPMLAEKIEGELA 460
Query: 653 L 653
+
Sbjct: 461 V 461
>gi|326338726|gb|EGD62546.1| DNA primase , phage-associated [Escherichia coli O157:H7 str. 1125]
Length = 604
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 50/241 (20%), Positives = 91/241 (37%), Gaps = 21/241 (8%)
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPF---VEGEPSQEFLD-----LVS 474
+++ +G +G+ D TG + K ++ ++ PF EGE L
Sbjct: 232 NAARNLIGFSNGVFDTRTGNFREHNKNDWLLIASELPFSPPAEGETLATHAPNFWKWLRR 291
Query: 475 GYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
E++ D + M L Q F+ + G GGSGKS + + G ++A
Sbjct: 292 SVAENDRKADRVLAALFMVLANRYDWQLFLEVTGPGGSGKSVMAEICTMLAGKANTVSAS 351
Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
+ R ++G ++I+ + + A IK +TGGD + +
Sbjct: 352 MKALEDAR---------ERALVVGFSLIIMPDMTRYAG-DGAGIKAITGGDKVAIDPKHK 401
Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK--PIANRDASFAQKLETKYT 652
YS + V N + + RR ++ F + P RD A+K+E +
Sbjct: 402 APYSTRIQAVV-LAVNNNAMSFSDRSGGISRRRVIFNFSEVVPENERDPMLAEKIEGELA 460
Query: 653 L 653
+
Sbjct: 461 V 461
>gi|44971462|gb|AAS49812.1| RPXV099 [Rabbitpox virus]
Length = 785
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 91/220 (41%), Gaps = 28/220 (12%)
Query: 432 QDGILDLETGQ--KVKPTKELYITKSTG-----TPFVEGEPSQEFL-----DLVSGYFES 479
++G+LDL G K+ T STG T FVE P E L D+ E+
Sbjct: 416 KNGVLDLVDGMFYSGDDAKKYMCTVSTGFKFDDTKFVEDSPEMEELMNIINDIQPLTDEN 475
Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA--SD 537
++ + + + + L G K G +GKST L+K A G+ +V + +D
Sbjct: 476 KKNRELYEKTLSSCLCGATKGC-LTFFFGETATGKSTTKRLLKSAIGDLFVETGQTILTD 534
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNE-----NDEINAAKIKQMTGGDCMTARLN 592
++ P NP + + R V SE + + +I + IK++T C+ R
Sbjct: 535 VLDKGP------NPFIANMHLKRSVFCSELPDFACSGSKKIRSDNIKKLTEP-CVIGRPC 587
Query: 593 YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF 632
+ N + + K +F R D+A RR V+ F
Sbjct: 588 FSNKINNRNHATIIIDTNYKPVFDR-IDNALMRRIAVVRF 626
>gi|225194734|gb|ACN81875.1| DNA-dependent NTPase [Volepox virus]
Length = 785
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 91/220 (41%), Gaps = 28/220 (12%)
Query: 432 QDGILDLETGQ--KVKPTKELYITKSTG-----TPFVEGEPSQEFL-----DLVSGYFES 479
++G+LDL G K+ T STG F+EG P E L D+ E+
Sbjct: 416 KNGVLDLVDGMFYSGDEAKKYTCTVSTGFRFDDVKFIEGSPEMEELVNIINDIQPLTDEN 475
Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA--SD 537
++ + + + + L G K G +GKST L+K A G+ +V + +D
Sbjct: 476 KKNRELYEKTLSSCLCGATKGC-LTFFFGETATGKSTTKRLLKSAIGDLFVETGQTILTD 534
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNE-----NDEINAAKIKQMTGGDCMTARLN 592
++ P NP + + R V SE + + +I + IK++T C+ R
Sbjct: 535 VLDKGP------NPFIANMHLKRSVFCSELPDFACSGSKKIRSDNIKKLTEP-CVIGRPC 587
Query: 593 YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF 632
+ N + + K +F R D+A RR V+ F
Sbjct: 588 FSNKINNRNHATIIIDTNYKPVFDR-IDNALMRRIAVVRF 626
>gi|254454539|ref|ZP_05067976.1| Bifunctional DNA primase/polymerase, N-terminal domain family
[Octadecabacter antarcticus 238]
gi|198268945|gb|EDY93215.1| Bifunctional DNA primase/polymerase, N-terminal domain family
[Octadecabacter antarcticus 238]
Length = 219
Score = 39.7 bits (91), Expect = 2.0, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 23/30 (76%)
Query: 225 SHDEWIPVVMAVHHETRGSSKGKEIARRWS 254
S D W+ ++ A+HHE+ GS+KG+++A WS
Sbjct: 184 SRDWWVKMLAALHHESSGSAKGRKLAHTWS 213
>gi|67925585|ref|ZP_00518913.1| hypothetical protein CwatDRAFT_0747 [Crocosphaera watsonii WH 8501]
gi|67852574|gb|EAM48005.1| hypothetical protein CwatDRAFT_0747 [Crocosphaera watsonii WH 8501]
Length = 288
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 84/227 (37%), Gaps = 23/227 (10%)
Query: 53 GFGFVCGVGEQP-LYAFDIDS----KDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFR 107
G G +CG + L+A D D + + T G P + + L
Sbjct: 63 GIGILCGHNSKEFLFAIDCDGISAHRSLQRLGQLPPTVSFTSGRP-----GRCQYLYKLP 117
Query: 108 MNKEGIKKKKTTESTQGHLDILGCG-QYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLS 166
+K+ IK K T + L+I G Q + + HP T +Y W P +V P
Sbjct: 118 SHKQ-IKSCKVTTAPGEVLEIRGSHHQSVLPPSPHPITG-QYRWVNSPADVEVAIAP--- 172
Query: 167 EEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSH 226
++L ++ T K K + P + + T+ E L +Y +
Sbjct: 173 ----QWLVQWIDLQTYKPSKPKNNRKPFHQNVSKLDTPSTSEEAAVALLDLIPSYYADDY 228
Query: 227 DEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFD 273
D WI V MA+ S E RWS+Q + YKW TF+
Sbjct: 229 DSWIKVGMALKSI---SPVLLEAWDRWSRQSKKWKPGECAYKWRTFN 272
>gi|196229748|ref|ZP_03128612.1| autotransporter-associated beta strand repeat protein [Chthoniobacter
flavus Ellin428]
gi|196226074|gb|EDY20580.1| autotransporter-associated beta strand repeat protein [Chthoniobacter
flavus Ellin428]
Length = 7139
Score = 39.7 bits (91), Expect = 2.0, Method: Composition-based stats.
Identities = 46/188 (24%), Positives = 65/188 (34%), Gaps = 39/188 (20%)
Query: 444 VKPTKELYITKSTGTP--------------FVEGEPSQEFLDLVSGYFESEEVMDYFTRC 489
V PT+ L +T ST P F + L++VSG F + + + +
Sbjct: 6327 VTPTQNLRLTASTTIPDAGLVINALSLRGTFDTNMTTNAVLNVVSGGFIANQTSNRLSNL 6386
Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR----PPE 545
+G L GGS S + L Y N Y INA D + P
Sbjct: 6387 IGQGYLTA------------GGSQTSGIAPLYLYNTANTYTINANVIDTAVPQGTFGPVA 6434
Query: 546 AGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFT 605
G +I G + + S N A TGG LN G +PA
Sbjct: 6435 TGAHVRLIISATGGAVSLASANN-----GAGSGNSYTGGTV----LNGGTLNLATPALLP 6485
Query: 606 PFIVPNKH 613
F++PN +
Sbjct: 6486 GFVIPNSN 6493
>gi|124378237|ref|YP_001029430.1| GfV-D2-ORF1 [Glypta fumiferanae ichnovirus]
gi|124270644|dbj|BAF45566.1| GfV-D2-ORF1 [Glypta fumiferanae ichnovirus]
Length = 694
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 58/144 (40%), Gaps = 18/144 (12%)
Query: 494 LLGGNKAQRFIHI---RGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKAN 550
+L G ++Q I + G SGKSTL L+ FGN Y+ ++ + GK+N
Sbjct: 538 MLNGKRSQEPCVILTDKRRGKSGKSTLTYLLHAVFGNYYLNDSIIESL--------GKSN 589
Query: 551 PSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVP 610
L R+ + + ++ + IK + D +TA NT+S P IV
Sbjct: 590 -----LENKRLFVADGSKKDKTLTGDFIKSIINSDYVTAEDTNCNTHSIFPIQAGLIIVS 644
Query: 611 NKH--LFVRNPDDAWWRRYIVIPF 632
KH L D R + P
Sbjct: 645 PKHDVLICDTNDKDLLNRIVTCPM 668
>gi|293369974|ref|ZP_06616541.1| phage/plasmid primase, P4 family, C-terminal domain protein
[Bacteroides ovatus SD CMC 3f]
gi|292634892|gb|EFF53414.1| phage/plasmid primase, P4 family, C-terminal domain protein
[Bacteroides ovatus SD CMC 3f]
Length = 554
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 79/173 (45%), Gaps = 24/173 (13%)
Query: 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR---PPEAGKANPSLIRLM 557
++ + + G GG+GKS L++++ G Q V + S + + E G + M
Sbjct: 268 EKCLVLLGSGGNGKSVLIDIVTALLGEQNVCHFSLSRLCEANGYYRAEIGNYLLNACSEM 327
Query: 558 GSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVR 617
GS+ N + E+ +KQ+ D ++AR YG + S ++ F+ F+
Sbjct: 328 GSK-------NTDPEM----VKQLFSNDPVSARSPYGKPVTVS--NYCRFLFSAN--FIS 372
Query: 618 NPDD----AWWRRYIVIPFDKPIAN--RDASFAQKLETKYTLEAKKWFLKGVK 664
N D ++RRY+ + F+ I ++ + A+++ + W L+G+K
Sbjct: 373 NKDMEQTIGYFRRYLFLEFNATIPEWKKNPNLAREIIEEELSGVFNWVLEGLK 425
>gi|17975015|ref|NP_536529.1| E5R [Monkeypox virus Zaire-96-I-16]
gi|17529882|gb|AAL40560.1|AF380138_102 E5R [Monkeypox virus Zaire-96-I-16]
gi|68448979|gb|AAY97101.1| NTPase [Monkeypox virus]
gi|68449181|gb|AAY97302.1| NTPase [Monkeypox virus]
gi|300872725|gb|ADK39127.1| NTPase [Monkeypox virus]
Length = 785
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 91/220 (41%), Gaps = 28/220 (12%)
Query: 432 QDGILDLETGQ--KVKPTKELYITKSTG-----TPFVEGEPSQEFL-----DLVSGYFES 479
++G+LDL G K+ T STG T FVE P E L D+ E+
Sbjct: 416 KNGVLDLVDGMFYSGDDAKKYTCTVSTGFKFDDTKFVENSPEMEELMNIINDIQPLTDEN 475
Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA--SD 537
++ + + + + L G K G +GKST L+K A G+ +V + +D
Sbjct: 476 KKNRELYEKTLSSCLCGATKGC-LTFFFGETATGKSTTKRLLKSAIGDLFVETGQTILTD 534
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNE-----NDEINAAKIKQMTGGDCMTARLN 592
++ P NP + + R V SE + + +I + IK++T C+ R
Sbjct: 535 VLDKGP------NPFIANMHLKRSVFCSELPDFACSGSKKIRSDNIKKLTEP-CVIGRPC 587
Query: 593 YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF 632
+ N + + K +F R D+A RR V+ F
Sbjct: 588 FSNKINNRNHATIIIDTNYKPVFDR-IDNALMRRIAVVRF 626
>gi|218690979|ref|YP_002399191.1| putative DNA primase from prophage [Escherichia coli ED1a]
gi|218428543|emb|CAR09471.2| putative DNA primase from prophage (possibly fragment) [Escherichia
coli ED1a]
Length = 606
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 50/241 (20%), Positives = 91/241 (37%), Gaps = 21/241 (8%)
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPF---VEGEPSQEFLD-----LVS 474
+++ +G +G+ D TG + K+ ++ ++ PF EGE L
Sbjct: 234 NTARHLIGFSNGVFDTRTGDFREHDKDDWLLIASELPFTPPAEGETLATHAPNFWKWLRR 293
Query: 475 GYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
E++ D + M L Q FI + G GGSGKS + + G ++A
Sbjct: 294 SVAENDRKADRVLAALFMVLANRYDWQLFIEVTGPGGSGKSVMAEICTMLAGKANTVSAS 353
Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
+ R ++G ++I+ + + A IK +TGGD + +
Sbjct: 354 MKALEDAR---------ERALVVGFSLIILPDMTRYAG-DGAGIKAITGGDKVAIDPKHK 403
Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK--PIANRDASFAQKLETKYT 652
YS + V N + + RR ++ F + P RD +K+E +
Sbjct: 404 APYSTRIPAVV-LAVNNSAMSFSDRSGGISRRRVIFNFSEVVPENERDPMLPEKIEGELA 462
Query: 653 L 653
+
Sbjct: 463 V 463
>gi|323098511|gb|ADX22749.1| NTPase [Monkeypox virus]
gi|323098708|gb|ADX22945.1| NTPase [Monkeypox virus]
Length = 785
Score = 39.7 bits (91), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 91/220 (41%), Gaps = 28/220 (12%)
Query: 432 QDGILDLETGQ--KVKPTKELYITKSTG-----TPFVEGEPSQEFL-----DLVSGYFES 479
++G+LDL G K+ T STG T FVE P E L D+ E+
Sbjct: 416 KNGVLDLVDGMFYSGDDAKKYTCTVSTGFKFDDTKFVENSPEMEELMNIINDIQPLTDEN 475
Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA--SD 537
++ + + + + L G K G +GKST L+K A G+ +V + +D
Sbjct: 476 KKNRELYEKTLSSCLCGATKGC-LTFFFGETATGKSTTKRLLKSAIGDLFVETGQTILTD 534
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNE-----NDEINAAKIKQMTGGDCMTARLN 592
++ P NP + + R V SE + + +I + IK++T C+ R
Sbjct: 535 VLDKGP------NPFIANMHLKRSVFCSELPDFACSGSKKIRSDNIKKLTEP-CVIGRPC 587
Query: 593 YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF 632
+ N + + K +F R D+A RR V+ F
Sbjct: 588 FSNKINNRNHATIIIDTNYKPVFDR-IDNALMRRIAVVRF 626
>gi|223933202|ref|ZP_03625193.1| phage/plasmid primase, P4 family [Streptococcus suis 89/1591]
gi|223898132|gb|EEF64502.1| phage/plasmid primase, P4 family [Streptococcus suis 89/1591]
Length = 517
Score = 39.7 bits (91), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 59/290 (20%), Positives = 117/290 (40%), Gaps = 39/290 (13%)
Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGT---PFVEG------EPSQEFLDLVSGYF 477
RF+ ++GI D + + T + T PF E + LDL+SG
Sbjct: 155 RFILVKNGIFDKQLKKMSGFTHRFVAFSTIETEYDPFAESPNIDGWDVDDWLLDLMSG-- 212
Query: 478 ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
++++ + + +L G ++ I G G GK T+ LI G + V + +
Sbjct: 213 -DKDLVHLLWQVISASLNGNYSYRKSIWFVGEGNDGKGTVQQLITNIVGIRNVATLKLNQ 271
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEIN-AAKIKQMTGGDCMTARLNYGNT 596
+ +L + G ++I + I+ ++ + G+ +
Sbjct: 272 FSERF---------ALSMIEGKTVIIGDDVQAGVYIDESSNFNSVVTGEPVLVEEKNKQP 322
Query: 597 YSESPASFTPFIVPNKHLFVR--NPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLE 654
YS F ++ + + R N + +RR+++IPF K + ++ ++ K E +
Sbjct: 323 YS---TVFKKTVIQSTNELPRFKNKTNGTYRRFLIIPFRKTFSAKEDNWQIKDEYINRDD 379
Query: 655 AKKWFLKGVKAYISKGLDVDI-----PEVCLKAKEEERQGTDTYQAWIDD 699
K++ LK K L+++ P+ L EE + DT +A+ID+
Sbjct: 380 VKQYVLK-------KALELNFTRFSEPQATLDVLEEFKSSNDTVKAFIDE 422
>gi|242243105|ref|ZP_04797550.1| P4 family phage / plasmid primase [Staphylococcus epidermidis
W23144]
gi|242233453|gb|EES35765.1| P4 family phage / plasmid primase [Staphylococcus epidermidis
W23144]
Length = 624
Score = 39.7 bits (91), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 41/226 (18%), Positives = 91/226 (40%), Gaps = 21/226 (9%)
Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEG---EPSQEFLDLVSGYFESE 480
S +L +GI DL T T E+ + P++E E + + + ++
Sbjct: 291 SPVNYLTLANGIYDLNTNSMQSFTPEIIVKNKIPVPYIENSYHEITDKTFNKLA--VNDH 348
Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540
E+ + F +G L N+ +F + G G +GKS+ + +++ G+ + D+
Sbjct: 349 ELRNLFEEILGYTLFRRNEYGKFFILTGGGSNGKSSFLKILRALVGDTNTSSVALKDV-- 406
Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY--- 597
G+ + L G + + + + ++A++K + G+ + + +
Sbjct: 407 -----NGRFKTA--ELFGKLVNLGDDIGKGFIKDSAELKNLATGETLVVERKGKDPFDLR 459
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASF 643
+ + F+ VP + + D RR +++PF N D +
Sbjct: 460 NYAKLIFSANEVPR----IDDKTDGLNRRLMIVPFKAKFTNTDIDY 501
>gi|22164699|ref|NP_671612.1| EVM094 [Ectromelia virus]
gi|22123840|gb|AAM92398.1|AF523264_94 EVM094 [Ectromelia virus]
Length = 785
Score = 39.7 bits (91), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 91/220 (41%), Gaps = 28/220 (12%)
Query: 432 QDGILDLETGQ--KVKPTKELYITKSTG-----TPFVEGEPSQEFL-----DLVSGYFES 479
++G+LDL G K+ T STG T FVE P E L D+ E+
Sbjct: 416 KNGVLDLVDGMFYSGDDAKKYTCTVSTGFKFDDTKFVEDSPEMEELMNIINDIQPLTDEN 475
Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA--SD 537
++ + + + + L G K G +GKST L+K A G+ +V + +D
Sbjct: 476 KKNRELYEKTLSSCLCGATKGC-LTFFFGETATGKSTTKRLLKSAIGDLFVETGQTILTD 534
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNE-----NDEINAAKIKQMTGGDCMTARLN 592
++ P NP + + R V SE + + +I + IK++T C+ R
Sbjct: 535 VLDKGP------NPFIANMHLKRSVFCSELPDFACSGSKKIRSDNIKKLTEP-CVIGRPC 587
Query: 593 YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF 632
+ N + + K +F R D+A RR V+ F
Sbjct: 588 FSNKINNRNHATIIIDTNYKPVFDR-IDNALMRRIAVVRF 626
>gi|2772775|gb|AAB96514.1| putative 90.4k protein [Vaccinia virus]
gi|47088430|gb|AAT10500.1| NTPase [Vaccinia virus]
Length = 785
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 91/220 (41%), Gaps = 28/220 (12%)
Query: 432 QDGILDLETGQ--KVKPTKELYITKSTG-----TPFVEGEPSQEFL-----DLVSGYFES 479
++G+LDL G K+ T STG T FVE P E L D+ E+
Sbjct: 416 KNGVLDLVDGMFYSGDDAKKYTCTVSTGFKFDDTKFVEDSPEMEELMNIINDIQPLTDEN 475
Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA--SD 537
++ + + + + L G K G +GKST L+K A G+ +V + +D
Sbjct: 476 KKNRELYEKTLSSCLCGATKGC-LTFFFGETATGKSTTKRLLKSAIGDLFVETGQTILTD 534
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNE-----NDEINAAKIKQMTGGDCMTARLN 592
++ P NP + + R V SE + + +I + IK++T C+ R
Sbjct: 535 VLDKGP------NPFIANMHLKRSVFCSELPDFACSGSKKIRSDNIKKLTEP-CVIGRPC 587
Query: 593 YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF 632
+ N + + K +F R D+A RR V+ F
Sbjct: 588 FSNKINNRNHATIIIDTNYKPVFDR-IDNALMRRIAVVRF 626
>gi|323179375|gb|EFZ64942.1| poxvirus D5 protein-like family protein [Escherichia coli 1180]
Length = 608
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 50/241 (20%), Positives = 90/241 (37%), Gaps = 21/241 (8%)
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPF---VEGEPSQEFLD-----LVS 474
+++ +G +G+ D TG + K ++ ++ PF EGE L
Sbjct: 236 NTARNLIGFSNGVFDTRTGNFREHNKNDWLLIASELPFSPPAEGETLATHAPNFWKWLRR 295
Query: 475 GYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
E++ D + M L Q FI + G GGSGKS + + G ++A
Sbjct: 296 SVAENDRKADRVLAALFMVLANRYDWQLFIEVTGPGGSGKSVMAEICTMLAGKANTVSAS 355
Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
+ R ++G ++I+ + + A IK +TGGD + +
Sbjct: 356 MKALEDAR---------ERALVVGFSLIILPDMTRYAG-DGAGIKAITGGDKVAIDPKHK 405
Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK--PIANRDASFAQKLETKYT 652
YS + V N + + RR ++ F + P RD +K+E +
Sbjct: 406 APYSTRIPAVV-LAVNNSAMSFSDRSGGISRRRVIFNFSEVVPENERDPMLPEKIEGELA 464
Query: 653 L 653
+
Sbjct: 465 V 465
>gi|20178485|ref|NP_619906.1| CPXV122 protein [Cowpox virus]
gi|20153103|gb|AAM13564.1|AF482758_115 CPXV122 protein [Cowpox virus]
Length = 785
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 91/220 (41%), Gaps = 28/220 (12%)
Query: 432 QDGILDLETGQ--KVKPTKELYITKSTG-----TPFVEGEPSQEFL-----DLVSGYFES 479
++G+LDL G K+ T STG T FVE P E L D+ E+
Sbjct: 416 KNGVLDLVDGMFYSGDDAKKYTCTVSTGFKFDDTKFVEDSPEMEELMNIINDIQPLTDEN 475
Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA--SD 537
++ + + + + L G K G +GKST L+K A G+ +V + +D
Sbjct: 476 KKNRELYEKTLSSCLCGATKGC-LTFFFGETATGKSTTKRLLKSAIGDLFVETGQTILTD 534
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNE-----NDEINAAKIKQMTGGDCMTARLN 592
++ P NP + + R V SE + + +I + IK++T C+ R
Sbjct: 535 VLDKGP------NPFIANMHLKRSVFCSELPDFACSGSKKIRSDNIKKLTEP-CVIGRPC 587
Query: 593 YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF 632
+ N + + K +F R D+A RR V+ F
Sbjct: 588 FSNKINNRNHATIIIDTNYKPVFDR-IDNALMRRIAVVRF 626
>gi|167412610|gb|ABZ80044.1| NTPase interacts with A20R [Vaccinia virus GLV-1h68]
Length = 785
Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 91/220 (41%), Gaps = 28/220 (12%)
Query: 432 QDGILDLETGQ--KVKPTKELYITKSTG-----TPFVEGEPSQEFL-----DLVSGYFES 479
++G+LDL G K+ T STG T FVE P E L D+ E+
Sbjct: 416 KNGVLDLVDGMFYSGDDAKKYTCTVSTGFKFDDTKFVEDSPEMEELMNIINDIQPLTDEN 475
Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA--SD 537
++ + + + + L G K G +GKST L+K A G+ +V + +D
Sbjct: 476 KKNRELYEKTLSSCLCGATKGC-LTFFFGETATGKSTTKRLLKSAIGDLFVETGQTILTD 534
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNE-----NDEINAAKIKQMTGGDCMTARLN 592
++ P NP + + R V SE + + +I + IK++T C+ R
Sbjct: 535 VLDKGP------NPFIANMHLKRSVFCSELPDFACSGSKKIRSDNIKKLTEP-CVIGRPC 587
Query: 593 YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF 632
+ N + + K +F R D+A RR V+ F
Sbjct: 588 FSNKINNRNHATIIIDTNYKPVFDR-IDNALMRRIAVVRF 626
>gi|30519484|emb|CAD90659.1| E5R protein [Cowpox virus]
Length = 785
Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 91/220 (41%), Gaps = 28/220 (12%)
Query: 432 QDGILDLETGQ--KVKPTKELYITKSTG-----TPFVEGEPSQEFL-----DLVSGYFES 479
++G+LDL G K+ T STG T FVE P E L D+ E+
Sbjct: 416 KNGVLDLVDGMFYSGDDAKKYTCTVSTGFKFDDTKFVEDSPEMEELMNIINDIQPLTDEN 475
Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA--SD 537
++ + + + + L G K G +GKST L+K A G+ +V + +D
Sbjct: 476 KKNRELYEKTLSSCLCGATKGC-LTFFFGETATGKSTTKRLLKSAIGDLFVETGQTILTD 534
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNE-----NDEINAAKIKQMTGGDCMTARLN 592
++ P NP + + R V SE + + +I + IK++T C+ R
Sbjct: 535 VLDKGP------NPFIANMHLKRSVFCSELPDFACSGSKKIRSDNIKKLTEP-CVIGRPC 587
Query: 593 YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF 632
+ N + + K +F R D+A RR V+ F
Sbjct: 588 FSNKINNRNHATIIIDTNYKPVFDR-IDNALMRRIAVVRF 626
>gi|160857992|emb|CAM58280.1| DNA-dependent ATPase [Vaccinia virus Ankara]
Length = 785
Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 91/220 (41%), Gaps = 28/220 (12%)
Query: 432 QDGILDLETGQ--KVKPTKELYITKSTG-----TPFVEGEPSQEFL-----DLVSGYFES 479
++G+LDL G K+ T STG T FVE P E L D+ E+
Sbjct: 416 KNGVLDLVDGMFYSGDDAKKYTCTVSTGFKFDDTKFVEDSPEMEELMNIINDIQPLTDEN 475
Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA--SD 537
++ + + + + L G K G +GKST L+K A G+ +V + +D
Sbjct: 476 KKNRELYEKTLSSCLCGATKGC-LTFFFGETATGKSTTKRLLKSAIGDLFVETGQTILTD 534
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNE-----NDEINAAKIKQMTGGDCMTARLN 592
++ P NP + + R V SE + + +I + IK++T C+ R
Sbjct: 535 VLDKGP------NPFIANMHLKRSVFCSELPDFACSGSKKIRSDNIKKLTEP-CVIGRPC 587
Query: 593 YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF 632
+ N + + K +F R D+A RR V+ F
Sbjct: 588 FSNKINNRNHATIIIDTNYKPVFDR-IDNALMRRIAVVRF 626
>gi|113195289|ref|YP_717419.1| NTPase [Taterapox virus]
gi|90660565|gb|ABD97678.1| NTPase [Taterapox virus]
Length = 785
Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 91/220 (41%), Gaps = 28/220 (12%)
Query: 432 QDGILDLETGQ--KVKPTKELYITKSTG-----TPFVEGEPSQEFL-----DLVSGYFES 479
++G+LDL G K+ T STG T FVE P E L D+ E+
Sbjct: 416 KNGVLDLVDGMFYSGDDAKKYTCTVSTGFKFDDTKFVEDSPEMEELMNIINDIQPLTDEN 475
Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA--SD 537
++ + + + + L G K G +GKST L+K A G+ +V + +D
Sbjct: 476 KKNRELYEKTLSSCLCGATKGC-LTFFFGETATGKSTTKRLLKSAIGDLFVETGQTILTD 534
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNE-----NDEINAAKIKQMTGGDCMTARLN 592
++ P NP + + R V SE + + +I + IK++T C+ R
Sbjct: 535 VLDKGP------NPFIANMHLKRSVFCSELPDFACSGSKKIRSDNIKKLTEP-CVIGRPC 587
Query: 593 YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF 632
+ N + + K +F R D+A RR V+ F
Sbjct: 588 FSNKINNRNHATIIIDTNYKPVFDR-IDNALMRRIAVVRF 626
>gi|260846581|ref|YP_003224359.1| putative DNA primase [Escherichia coli O103:H2 str. 12009]
gi|257761728|dbj|BAI33225.1| putative DNA primase [Escherichia coli O103:H2 str. 12009]
gi|326339871|gb|EGD63678.1| DNA primase , phage-associated [Escherichia coli O157:H7 str. 1125]
Length = 608
Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 50/241 (20%), Positives = 90/241 (37%), Gaps = 21/241 (8%)
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPF---VEGEPSQEFLD-----LVS 474
+++ +G +G+ D TG + K ++ ++ PF EGE L
Sbjct: 236 NTARNLIGFSNGVFDTRTGNFREHNKNDWLLIASELPFSPPAEGETLATHAPNFWKWLRR 295
Query: 475 GYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
E++ D + M L Q FI + G GGSGKS + + G ++A
Sbjct: 296 SVAENDRKADRVLAALFMVLANRYDWQLFIEVTGPGGSGKSVMAEICTMLAGKANTVSAS 355
Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
+ R ++G ++I+ + + A IK +TGGD + +
Sbjct: 356 MKALEDAR---------ERALVVGFSLIILPDMTRYAG-DGAGIKAITGGDKVAIDPKHK 405
Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK--PIANRDASFAQKLETKYT 652
YS + V N + + RR ++ F + P RD +K+E +
Sbjct: 406 APYSTRIPAVV-LAVNNSAMSFSDRSGGISRRRVIFNFSEVVPENERDPMLPEKIEGELA 464
Query: 653 L 653
+
Sbjct: 465 V 465
>gi|90660347|gb|ABD97461.1| NTPase [Cowpox virus]
Length = 785
Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 91/220 (41%), Gaps = 28/220 (12%)
Query: 432 QDGILDLETGQ--KVKPTKELYITKSTG-----TPFVEGEPSQEFL-----DLVSGYFES 479
++G+LDL G K+ T STG T FVE P E L D+ E+
Sbjct: 416 KNGVLDLVDGMFYSGDDAKKYTCTVSTGFKFDDTKFVEDSPEMEELMNIINDIQPLTDEN 475
Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA--SD 537
++ + + + + L G K G +GKST L+K A G+ +V + +D
Sbjct: 476 KKNRELYEKTLSSCLCGATKGC-LTFFFGETATGKSTTKRLLKSAIGDLFVETGQTILTD 534
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNE-----NDEINAAKIKQMTGGDCMTARLN 592
++ P NP + + R V SE + + +I + IK++T C+ R
Sbjct: 535 VLDKGP------NPFIANMHLKRSVFCSELPDFACSGSKKIRSDNIKKLTEP-CVIGRPC 587
Query: 593 YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF 632
+ N + + K +F R D+A RR V+ F
Sbjct: 588 FSNKINNRNHATIIIDTNYKPVFDR-IDNALMRRIAVVRF 626
>gi|66275907|ref|YP_232992.1| NTPase [Vaccinia virus]
gi|137602|sp|P04305|VD05_VACCV RecName: Full=Protein D5
gi|335647|gb|AAA48259.1| ORF5 cds [Vaccinia virus]
gi|893340|gb|AAA69629.1| unknown protein [Vaccinia virus]
gi|29692216|gb|AAO89389.1| NTPase interacts with A20R [Vaccinia virus WR]
gi|88854163|gb|ABD52581.1| nucleic acid-independent nucleoside triphosphatase [Vaccinia virus]
Length = 785
Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 91/220 (41%), Gaps = 28/220 (12%)
Query: 432 QDGILDLETGQ--KVKPTKELYITKSTG-----TPFVEGEPSQEFL-----DLVSGYFES 479
++G+LDL G K+ T STG T FVE P E L D+ E+
Sbjct: 416 KNGVLDLVDGMFYSGDDAKKYTCTVSTGFKFDDTKFVEDSPEMEELMNIINDIQPLTDEN 475
Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA--SD 537
++ + + + + L G K G +GKST L+K A G+ +V + +D
Sbjct: 476 KKNRELYEKTLSSCLCGATKGC-LTFFFGETATGKSTTKRLLKSAIGDLFVETGQTILTD 534
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNE-----NDEINAAKIKQMTGGDCMTARLN 592
++ P NP + + R V SE + + +I + IK++T C+ R
Sbjct: 535 VLDKGP------NPFIANMHLKRSVFCSELPDFACSGSKKIRSDNIKKLTEP-CVIGRPC 587
Query: 593 YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF 632
+ N + + K +F R D+A RR V+ F
Sbjct: 588 FSNKINNRNHATIIIDTNYKPVFDR-IDNALMRRIAVVRF 626
>gi|254518128|ref|ZP_05130184.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA]
gi|226911877|gb|EEH97078.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA]
Length = 553
Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 50/256 (19%), Positives = 99/256 (38%), Gaps = 29/256 (11%)
Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539
+E++ G AL+ KA+R GVG +GKS ++ G V N + S
Sbjct: 256 DELLSCLQEIFGNALINNTKAERAFFFTGVGSNGKSFCSEVLTEIVGVNNVSNIQLSKFS 315
Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR------LNY 593
+ E ++ + I +E I+ +K + GD + +NY
Sbjct: 316 ERFGIEG---------IVSKTLNIANENELGGAISTENLKAIISGDTINISRKFKQAINY 366
Query: 594 GNTYSESPASFT-PFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYT 652
+T T P + N H ++R+ +++PF++ D +KL+ K
Sbjct: 367 KSTIKLIFLLNTLPDTLDNTH--------GYYRKILIVPFNRVFKPEDID--KKLKEKVC 416
Query: 653 LEAK---KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWE 709
E W L+G + I+ + + K + ++ + +A++++ E E
Sbjct: 417 TELSGVLNWCLEGAERLINNDYNFTESKAIEKVTKAYKEEQNPVEAYLNEVLVYEEGSSE 476
Query: 710 ESHSLAKSYSEYREQE 725
++ +Y + E E
Sbjct: 477 TKKAVLDAYKSWIEGE 492
>gi|51342262|gb|AAU01306.1| MPXV-WRAIR096 [Monkeypox virus]
gi|58220566|gb|AAW67854.1| MPXV-SL-096 [Monkeypox virus]
gi|59858902|gb|AAX09197.1| MPXV-COP-096 [Monkeypox virus]
gi|68448778|gb|AAY96901.1| NTPase [Monkeypox virus]
gi|68449380|gb|AAY97500.1| NTPase [Monkeypox virus]
gi|68449580|gb|AAY97699.1| NTPase [Monkeypox virus]
Length = 785
Score = 39.3 bits (90), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 91/220 (41%), Gaps = 28/220 (12%)
Query: 432 QDGILDLETGQ--KVKPTKELYITKSTG-----TPFVEGEPSQEFL-----DLVSGYFES 479
++G+LDL G K+ T STG T FVE P E L D+ E+
Sbjct: 416 KNGVLDLVDGMFYSGDDAKKYTCTVSTGFKFDDTKFVEDSPEMEELMNIINDIQPLTDEN 475
Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA--SD 537
++ + + + + L G K G +GKST L+K A G+ +V + +D
Sbjct: 476 KKNRELYEKTLSSCLCGATKGC-LTFFFGETATGKSTTKRLLKSAIGDLFVETGQTILTD 534
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNE-----NDEINAAKIKQMTGGDCMTARLN 592
++ P NP + + R V SE + + +I + IK++T C+ R
Sbjct: 535 VLDKGP------NPFIANMHLKRSVFCSELPDFACSGSKKIRSDNIKKLTEP-CVIGRPC 587
Query: 593 YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF 632
+ N + + K +F R D+A RR V+ F
Sbjct: 588 FSNKINNRNHATIIIDTNYKPVFDR-IDNALMRRIAVVRF 626
>gi|9634728|ref|NP_039021.1| NTPase, DNA replication [Fowlpox virus]
gi|19857121|sp|P21969|VD05_FOWPN RecName: Full=Protein FPV058
gi|7271556|gb|AAF44402.1|AF198100_49 ORF FPV058 NTPase, DNA replication [Fowlpox virus]
gi|41023349|emb|CAE52603.1| DNA replication complex protein D5R orthologue [Fowlpox virus
isolate HP-438/Munich]
Length = 791
Score = 39.3 bits (90), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 58/254 (22%), Positives = 102/254 (40%), Gaps = 31/254 (12%)
Query: 403 KSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETG--QKVKPTKELYITKSTGTPF 460
K +L+ I +I +D +FL +G+ D++ + K+ T STG +
Sbjct: 394 KVIEHNLKDMLIDTIETDTYPEKLQFL---NGVYDIKDSIFYQGNDAKKFVCTVSTGYKY 450
Query: 461 VEG----EPSQEFLDLVSGY-------FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGV 509
EG + + E + ++ FE+ E+ + + + L+G K Q G
Sbjct: 451 EEGINVDDITTELMSILDDIQPKTKENFENREL---YEQILSSCLMGTTK-QCIFFFYGE 506
Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISE--- 566
+GKST L+K N ++ E ++ + G NP + + R+V SE
Sbjct: 507 TATGKSTTKKLLKSVMHNMFL---ETGQVILTEQMDKG-PNPFIANMHLKRVVFCSELPD 562
Query: 567 --TNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWW 624
N + +I + IK++T C+ R Y N + + T I N D+A
Sbjct: 563 FSCNTSKKIRSDNIKKLTEP-CVVGRSCYSNKINNRNHA-TIIIDTNYKPVFDKVDNAIM 620
Query: 625 RRYIVIPFDKPIAN 638
RR ++ F N
Sbjct: 621 RRIALVNFKTHFTN 634
>gi|56713483|gb|AAW23523.1| putative NTPase [Vaccinia virus]
gi|56713767|gb|AAW23805.1| putative NTPase [Vaccinia virus]
Length = 785
Score = 39.3 bits (90), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 91/220 (41%), Gaps = 28/220 (12%)
Query: 432 QDGILDLETGQ--KVKPTKELYITKSTG-----TPFVEGEPSQEFL-----DLVSGYFES 479
++G+LDL G K+ T STG T FVE P E L D+ E+
Sbjct: 416 KNGVLDLVDGMFYSGDDAKKYTCTVSTGFKFDDTKFVEDSPEMEELMNIINDIQPLTDEN 475
Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA--SD 537
++ + + + + L G K G +GKST L+K A G+ +V + +D
Sbjct: 476 KKNRELYEKTLSSCLCGATKGC-LTFFFGETATGKSTTKRLLKSAIGDLFVETGQTILTD 534
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNE-----NDEINAAKIKQMTGGDCMTARLN 592
++ P NP + + R V SE + + +I + IK++T C+ R
Sbjct: 535 VLDKGP------NPFIANMHLKRSVFCSELPDFACSGSKKIRSDNIKKLTEP-CVIGRPC 587
Query: 593 YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF 632
+ N + + K +F R D+A RR V+ F
Sbjct: 588 FSNKINNRNHATIIIDTNYKPVFDR-IDNALMRRIAVVRF 626
>gi|6969760|gb|AAF33972.1| TD5R [Vaccinia virus Tian Tan]
Length = 785
Score = 39.3 bits (90), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 91/220 (41%), Gaps = 28/220 (12%)
Query: 432 QDGILDLETGQ--KVKPTKELYITKSTG-----TPFVEGEPSQEFL-----DLVSGYFES 479
++G+LDL G K+ T STG T FVE P E L D+ E+
Sbjct: 416 KNGVLDLVDGMFYSGDDAKKYTCTVSTGFKFDDTKFVEDSPEMEELMNIIKDIQPLTDEN 475
Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA--SD 537
++ + + + + L G K G +GKST L+K A G+ +V + +D
Sbjct: 476 KKNRELYEKTLSSCLCGATKGC-LTFFFGETATGKSTTKRLLKSAIGDLFVETGQTILTD 534
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNE-----NDEINAAKIKQMTGGDCMTARLN 592
++ P NP + + R V SE + + +I + IK++T C+ R
Sbjct: 535 VLDKGP------NPFIANMHLKRSVFCSELPDFACSGSKKIRSDNIKKLTEP-CVIGRPC 587
Query: 593 YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF 632
+ N + + K +F R D+A RR V+ F
Sbjct: 588 FSNKINNRNHATIIIDTNYKPVFDR-IDNALMRRIAVVRF 626
>gi|313576825|gb|ADR67001.1| bacteriophage P4 DNA primase [Klebsiella pneumoniae subsp.
pneumoniae]
Length = 271
Score = 39.3 bits (90), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 70/164 (42%), Gaps = 19/164 (11%)
Query: 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSR 560
Q F+ + G GGSGKS L + G NA ++ I P A L+G
Sbjct: 10 QLFLDVTGTGGSGKSILAEIATLLAGED---NATSATIETLESPRERAA------LIGFP 60
Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFI---VPNKHLFVR 617
++ + + ++ + A +K +TGGD ++ Y + YS ++ P + V N +
Sbjct: 61 LIRLPDQDKWSG-DGAGLKAITGGDAVSVDPKYRDAYS----AYIPAVILAVNNNPMRFT 115
Query: 618 NPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWF 659
N RR ++I F + IA RD K+ + + ++
Sbjct: 116 NRSGGVSRRRVIIHFPEQIAPEERDPQLRDKIARELAVIVRQLM 159
>gi|168798600|ref|ZP_02823607.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC508]
gi|189378766|gb|EDU97182.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC508]
Length = 608
Score = 39.3 bits (90), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 50/241 (20%), Positives = 90/241 (37%), Gaps = 21/241 (8%)
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPF---VEGEPSQEFLD-----LVS 474
+++ +G +G+ D TG + K ++ ++ PF EGE L
Sbjct: 236 NTARNLIGFSNGVFDTRTGNFREHNKNDWLLIASELPFSPPAEGETLATHAPNFWKWLRR 295
Query: 475 GYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
E++ D + M L Q FI + G GGSGKS + + G ++A
Sbjct: 296 SVAENDRKADRVLAALFMVLANRYDWQLFIEVTGPGGSGKSVMAEICTMLAGKANTVSAS 355
Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
+ R ++G ++I+ + + A IK +TGGD + +
Sbjct: 356 IKALEDAR---------ERALVVGFSLIILPDMTRYAG-DGAGIKAITGGDKVAIDPKHK 405
Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK--PIANRDASFAQKLETKYT 652
YS + V N + + RR ++ F + P RD +K+E +
Sbjct: 406 APYSTRIPAVV-LAVNNSAMSFSDRSGGISRRRVIFNFSEVVPENERDPMLPEKIEGELA 464
Query: 653 L 653
+
Sbjct: 465 V 465
>gi|137601|sp|P21010|VD05_VACCC RecName: Full=Protein D5
gi|335450|gb|AAA48102.1| putative D5R [Vaccinia virus Copenhagen]
Length = 785
Score = 39.3 bits (90), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 91/220 (41%), Gaps = 28/220 (12%)
Query: 432 QDGILDLETGQ--KVKPTKELYITKSTG-----TPFVEGEPSQEFL-----DLVSGYFES 479
++G+LDL G K+ T STG T FVE P E L D+ E+
Sbjct: 416 KNGVLDLVDGMFYSGDDAKKYTCTVSTGFKFDDTKFVEDSPEMEELMNIINDIQPLTDEN 475
Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA--SD 537
++ + + + + L G K G +GKST L+K A G+ +V + +D
Sbjct: 476 KKNRELYEKTLSSCLCGATKGC-LTFFFGETATGKSTTKRLLKSAIGDLFVETGQTILTD 534
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNE-----NDEINAAKIKQMTGGDCMTARLN 592
++ P NP + + R V SE + + +I + IK++T C+ R
Sbjct: 535 VLDKGP------NPFIANMHLKRSVFCSELPDFACSGSKKIRSDNIKKLTEP-CVIGRPC 587
Query: 593 YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF 632
+ N + + K +F R D+A RR V+ F
Sbjct: 588 FSNKINNRNHATIIIDTNYKPVFDR-IDNALMRRIAVVRF 626
>gi|37551555|gb|AAQ93207.1| NTPase [Vaccinia virus]
gi|38348977|gb|AAR17953.1| NTPase [Vaccinia virus]
gi|88900728|gb|ABD57640.1| VACV106 [Vaccinia virus]
gi|90819770|gb|ABD98580.1| VACV-DUKE-118 [Vaccinia virus]
Length = 785
Score = 38.9 bits (89), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 91/220 (41%), Gaps = 28/220 (12%)
Query: 432 QDGILDLETGQ--KVKPTKELYITKSTG-----TPFVEGEPSQEFL-----DLVSGYFES 479
++G+LDL G K+ T STG T FVE P E L D+ E+
Sbjct: 416 KNGVLDLVDGMFYSGDNAKKYTCTVSTGFKFDDTKFVEDSPEMEELMNIINDIQPLTDEN 475
Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA--SD 537
++ + + + + L G K G +GKST L+K A G+ +V + +D
Sbjct: 476 KKNRELYEKTLSSCLCGATKGC-LTFFFGETATGKSTTKRLLKSAIGDLFVETGQTILTD 534
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNE-----NDEINAAKIKQMTGGDCMTARLN 592
++ P NP + + R V SE + + +I + IK++T C+ R
Sbjct: 535 VLDKGP------NPFIANMHLKRSVFCSELPDFACSGSKKIRSDNIKKLTEP-CVIGRPC 587
Query: 593 YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF 632
+ N + + K +F R D+A RR V+ F
Sbjct: 588 FSNKINNRNHATIIIDTNYKPVFDR-IDNALMRRIAVVRF 626
>gi|125625017|ref|YP_001033500.1| putative DNA primase [Lactococcus lactis subsp. cremoris MG1363]
gi|124493825|emb|CAL98818.1| putative Dna Primase [Lactococcus lactis subsp. cremoris MG1363]
gi|300071817|gb|ADJ61217.1| putative DNA primase [Lactococcus lactis subsp. cremoris NZ9000]
Length = 542
Score = 38.9 bits (89), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 44/223 (19%), Positives = 93/223 (41%), Gaps = 28/223 (12%)
Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKST---------GTPFVEGEPSQEFL-DLV 473
+ + + +GI + +T Q+++P Y+ ST P + G ++L DL+
Sbjct: 175 AEAHLIPVANGIFNKKT-QQLEPFSPSYVFTSTIATKYNAKAKAPNINGWNIDDWLNDLM 233
Query: 474 SGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
SG EE++ + + + G ++ + + G G GK T +LI G + V +
Sbjct: 234 SG---DEELVKLLWQVISASTNGNYSYRKGVWLVGKGNDGKGTFQSLIMNLIGRENVASV 290
Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593
+A + +L +++G +I ++ + NA + GD +
Sbjct: 291 KAEQFAERF---------ALSQVVGKTCIIGDDSQVSYLDNAGNYFSVVTGDPVPIE--- 338
Query: 594 GNTYSESPASFTPFIVPNKHLF--VRNPDDAWWRRYIVIPFDK 634
+ A F ++ + + RN + +RR +++PF+K
Sbjct: 339 AKGKQPTLAVFNKLVIQSTNFLPKFRNKSNGTYRRLLIVPFEK 381
>gi|111184297|gb|ABH08217.1| HSPV111 [Horsepox virus]
Length = 785
Score = 38.9 bits (89), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 91/220 (41%), Gaps = 28/220 (12%)
Query: 432 QDGILDLETGQ--KVKPTKELYITKSTG-----TPFVEGEPSQEFL-----DLVSGYFES 479
++G+LDL G K+ T STG T FVE P E L D+ E+
Sbjct: 416 KNGVLDLVDGMFYSGDNAKKYTCTVSTGFKFDDTKFVEDSPEMEELMNIINDIQPLTDEN 475
Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA--SD 537
++ + + + + L G K G +GKST L+K A G+ +V + +D
Sbjct: 476 KKNRELYEKTLSSCLCGATKGC-LTFFFGETATGKSTTKRLLKSAIGDLFVETGQTILTD 534
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNE-----NDEINAAKIKQMTGGDCMTARLN 592
++ P NP + + R V SE + + +I + IK++T C+ R
Sbjct: 535 VLDKGP------NPFIANMHLKRSVFCSELPDFACSGSKKIRSDNIKKLTEP-CVIGRPC 587
Query: 593 YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF 632
+ N + + K +F R D+A RR V+ F
Sbjct: 588 FSNKINNRNHATIIIDTNYKPVFDR-IDNALMRRIAVVRF 626
>gi|61228|emb|CAA35068.1| ORF FPD5 [Fowlpox virus]
Length = 791
Score = 38.9 bits (89), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 58/254 (22%), Positives = 102/254 (40%), Gaps = 31/254 (12%)
Query: 403 KSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETG--QKVKPTKELYITKSTGTPF 460
K +L+ I +I +D +FL +G+ D++ + K+ T STG +
Sbjct: 394 KVIEHNLKDMLIDTIETDTYPEKLQFL---NGVYDIKDSIFYQGNDAKKFVCTVSTGYKY 450
Query: 461 VEG----EPSQEFLDLVSGY-------FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGV 509
EG + + E + ++ FE+ E+ + + + L+G K Q G
Sbjct: 451 EEGINVDDITTELMSILDDIQPKTKENFENREL---YEQILSSCLMGTTK-QCIFFFYGE 506
Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISET-- 567
+GKST L+K N ++ E ++ + G NP + + R+V SE
Sbjct: 507 TATGKSTTKKLLKSVMHNMFL---ETGQVILTEQMDKG-PNPFIANMHLKRVVFCSELPD 562
Query: 568 ---NENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWW 624
N + +I + IK++T C+ R Y N + + T I N D+A
Sbjct: 563 FSYNTSKKIRSDNIKKLTEP-CVVGRSCYSNKINNRNHA-TIIIDTNYKPVFDKVDNAIM 620
Query: 625 RRYIVIPFDKPIAN 638
RR ++ F N
Sbjct: 621 RRIALVNFKTHFTN 634
>gi|116512920|ref|YP_811827.1| phage DNA polymerase [Lactococcus lactis subsp. cremoris SK11]
gi|116108574|gb|ABJ73714.1| Phage DNA polymerase (ATPase domain) [Lactococcus lactis subsp.
cremoris SK11]
Length = 542
Score = 38.9 bits (89), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 44/223 (19%), Positives = 93/223 (41%), Gaps = 28/223 (12%)
Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKST---------GTPFVEGEPSQEFL-DLV 473
+ + + +GI + +T Q+++P Y+ ST P + G ++L DL+
Sbjct: 175 AEAHLIPVANGIFNKKT-QQLEPFSPSYVFTSTIATKYNAKAKAPNINGWNIDDWLNDLM 233
Query: 474 SGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
SG EE++ + + + G ++ + + G G GK T +LI G + V +
Sbjct: 234 SG---DEELVKLLWQVISASTNGNYSYRKGVWLVGKGNDGKGTFQSLIMNLIGRENVASV 290
Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593
+A + +L +++G +I ++ + NA + GD +
Sbjct: 291 KAEQFAERF---------ALSQVVGKTCIIGDDSQVSYLDNAGNYFSVVTGDPVPIE--- 338
Query: 594 GNTYSESPASFTPFIVPNKHLF--VRNPDDAWWRRYIVIPFDK 634
+ A F ++ + + RN + +RR +++PF+K
Sbjct: 339 AKGKQPTLAVFNKLVIQSTNFLPKFRNKSNGTYRRLLIVPFEK 381
>gi|329115876|ref|ZP_08244593.1| nucleoside triphosphatase, D5 family [Streptococcus parauberis NCFD
2020]
gi|326906281|gb|EGE53195.1| nucleoside triphosphatase, D5 family [Streptococcus parauberis NCFD
2020]
Length = 426
Score = 38.5 bits (88), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 65/160 (40%), Gaps = 17/160 (10%)
Query: 482 VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD-IMQ 540
V+ F C+ L +R + G GG+GK TL Q++IN D +
Sbjct: 118 VIQMFKACITNEPL-----ERIFWLYGAGGTGKGTLQ---------QFIINLVGLDNVAS 163
Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEI-NAAKIKQMTGGDCMTARLNYGNTYSE 599
+ E ++ + L+G IVI + +N I + +++ +T GD MT YS
Sbjct: 164 LKITELARSRFTTSILLGKSIVIGDDIQQNAMIKDTSELFSLTTGDIMTIEEKGLKPYSL 223
Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR 639
T N + DA RR ++IPF N+
Sbjct: 224 R-LQMTVIQSSNGLPIMDGDKDAISRRLMIIPFTSKYKNK 262
>gi|169346926|ref|ZP_02865874.1| putative phage [Clostridium perfringens C str. JGS1495]
gi|169296985|gb|EDS79109.1| putative phage [Clostridium perfringens C str. JGS1495]
Length = 927
Score = 38.5 bits (88), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 53/241 (21%), Positives = 106/241 (43%), Gaps = 24/241 (9%)
Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF-GNQYVINAEASDIMQNRPPEAGK 548
VG L +Q+ G +GKSTL+ +++Y G + V N +I K
Sbjct: 655 VGYLLTTNTASQKAFVFWGPARTGKSTLLWVVEYLLLGKKNVSNIPWQEI-------GDK 707
Query: 549 ANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPAS---FT 605
+ L+G + S+ + K +TG D + A N + P + F+
Sbjct: 708 FKTA--ELLGKLANVFSDLPSKSIDDTGIFKVVTGEDYLMAEKKNKNPFKFKPFARLVFS 765
Query: 606 PFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAK---KWFLKG 662
+P ++ + + ++RR I++PF + I + + L+ K+ E + W L+G
Sbjct: 766 CNELPRNYV---DRTEGFYRRLIIVPFSRQI--EKSKIDKALKYKFQREKEGILNWALEG 820
Query: 663 VKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYR 722
+K + E+ K+E ++ + +++++CC+I ++L+ S S + Y Y+
Sbjct: 821 LKRLYENNFEFSENELTDGVKKEYKRENNNVISFVEECCEI-DSLF--SCSRIEIYEAYK 877
Query: 723 E 723
E
Sbjct: 878 E 878
>gi|168759751|ref|ZP_02784758.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC4501]
gi|217324190|ref|ZP_03440274.1| nucleoside triphosphatase, D5 family [Escherichia coli O157:H7 str.
TW14588]
gi|189369456|gb|EDU87872.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC4501]
gi|217320411|gb|EEC28835.1| nucleoside triphosphatase, D5 family [Escherichia coli O157:H7 str.
TW14588]
Length = 607
Score = 38.5 bits (88), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 50/241 (20%), Positives = 90/241 (37%), Gaps = 21/241 (8%)
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPF---VEGEPSQEFLD-----LVS 474
+++ +G +G+ D TG + K ++ ++ PF EGE L
Sbjct: 235 NTARNLIGFSNGVFDTRTGDFREHDKNDWLLIASELPFTPPAEGETLATHAPNFWKWLRR 294
Query: 475 GYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
E++ D + M L Q FI + G GGSGKS + + G ++A
Sbjct: 295 SVAENDRKADRVLAALFMVLANRYDWQLFIEVTGPGGSGKSVMAEICTMLAGKANTVSAS 354
Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
+ R ++G ++I+ + + A IK +TGGD + +
Sbjct: 355 MKALEDAR---------ERALVVGFSLIILPDMTRYAG-DGAGIKAITGGDKVAIDPKHK 404
Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK--PIANRDASFAQKLETKYT 652
YS + V N + + RR ++ F + P RD +K+E +
Sbjct: 405 APYSTRIPAVV-LAVNNSAMSFSDRSGGISRRRVIFNFSEVVPENERDPMLPEKIEGELA 463
Query: 653 L 653
+
Sbjct: 464 V 464
>gi|116872632|ref|YP_849413.1| phage-related DNA primase/helicase, putative [Listeria welshimeri
serovar 6b str. SLCC5334]
gi|116741510|emb|CAK20634.1| phage-related DNA primase/helicase, putative [Listeria welshimeri
serovar 6b str. SLCC5334]
Length = 780
Score = 38.5 bits (88), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 44/211 (20%), Positives = 89/211 (42%), Gaps = 23/211 (10%)
Query: 432 QDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE--------FLDLVSGYFESEEVM 483
++G+ +L+T + T + T TP+V P Q +LD ++ E++
Sbjct: 423 KNGVFNLKTKKLEAFTPDYVFTSKIATPYVANPPKQNINGWDVHTWLDEIAC--GDEQIT 480
Query: 484 DYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP 543
+ + +L G + I + G G +GK T L++ GN N + Q +
Sbjct: 481 SLLWQVISASLNGNYSRKSSIWLLGDGNNGKGTFQQLLRNLIGNS---NIATLKLPQFQE 537
Query: 544 PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPAS 603
+ + +G + +++ N+ +TG + M + N + YS A+
Sbjct: 538 RFSLSILEEKVCCIGDDVPAGVYIDDSSNFNSV----VTGDEIMVEQKN-KHPYS---AN 589
Query: 604 FTPFIVPNKHLF--VRNPDDAWWRRYIVIPF 632
F ++ + + +RN D +RR+I++PF
Sbjct: 590 FHMTVIQSTNGMPKMRNKTDGTYRRFIIVPF 620
>gi|254991956|ref|ZP_05274146.1| phage-related DNA primase/helicase, putative [Listeria
monocytogenes FSL J2-064]
Length = 780
Score = 38.5 bits (88), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 44/211 (20%), Positives = 89/211 (42%), Gaps = 23/211 (10%)
Query: 432 QDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE--------FLDLVSGYFESEEVM 483
++G+ +L+T + T + T TP+V P Q +LD ++ E++
Sbjct: 423 KNGVFNLKTKKLEAFTPDYVFTSKIATPYVANPPKQNINGWDVHTWLDEIAC--GDEQIT 480
Query: 484 DYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP 543
+ + +L G + I + G G +GK T L++ GN N + Q +
Sbjct: 481 SLLWQVISASLNGNYSRKSSIWLLGDGNNGKGTFQQLLRNLIGNS---NIATLKLPQFQE 537
Query: 544 PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPAS 603
+ + +G + +++ N+ +TG + M + N + YS A+
Sbjct: 538 RFSLSILEEKVCCIGDDVPAGVYIDDSSNFNSV----VTGDEIMVEQKN-KHPYS---AN 589
Query: 604 FTPFIVPNKHLF--VRNPDDAWWRRYIVIPF 632
F ++ + + +RN D +RR+I++PF
Sbjct: 590 FHMTVIQSTNGMPKMRNKTDGTYRRFIIVPF 620
>gi|307129027|ref|YP_003881043.1| DNA primase [Dickeya dadantii 3937]
gi|306526556|gb|ADM96486.1| DNA primase [Dickeya dadantii 3937]
Length = 589
Score = 38.5 bits (88), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 51/240 (21%), Positives = 93/240 (38%), Gaps = 21/240 (8%)
Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPF---VEGEPSQEFLD-----LVSG 475
++ +G +G+ D +GQ KE ++ ++ PF EGE L
Sbjct: 215 TARNLIGFSNGVFDTRSGQFRCHIKEDWLLIASELPFSAPAEGETLATHAPSFWKWLSRS 274
Query: 476 YFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535
++ D + M L Q F+ + G GGSGKS + G ++A
Sbjct: 275 VGNNKRKADRVLAALFMVLANRYDWQLFLEVTGPGGSGKSVFAEICTMLAGKANTVSASM 334
Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595
+ R + +L+ +G ++I+ + + A IK +TGGD ++ +
Sbjct: 335 KALEDPR-------DRALV--VGYSLIIMPDMTRYAG-DGAGIKAITGGDKVSIDPKHKA 384
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK--PIANRDASFAQKLETKYTL 653
YS + V N + + RR ++ F + P RD A+K+E + +
Sbjct: 385 PYSTRIPAVV-LAVNNNAMTFSDRSGGISRRRVIFNFSEVVPENERDPMLAEKIEGELAV 443
>gi|281492874|ref|YP_003354854.1| phage DNA primase [Lactococcus lactis subsp. lactis KF147]
gi|281376526|gb|ADA66012.1| Phage protein, DNA primase [Lactococcus lactis subsp. lactis KF147]
Length = 542
Score = 38.5 bits (88), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 44/223 (19%), Positives = 92/223 (41%), Gaps = 28/223 (12%)
Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKST---------GTPFVEGEPSQE-FLDLV 473
+ + + +GI + +T Q+++P Y+ ST P + G + LDL+
Sbjct: 175 AEAHLIPVANGIFNKKT-QQLEPFSPKYVFTSTIATKYNAKAKVPNINGWNVDDWLLDLM 233
Query: 474 SGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
SG +E++ + + + G ++ + + G G GK T +LI G + V +
Sbjct: 234 SG---DKELVSLLWQIISASTNGNYSYRKGVWLVGKGNDGKGTFQSLIMNLIGRENVASV 290
Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593
+A + SL +++G +I ++ + NA + GD +
Sbjct: 291 KAEQFSERF---------SLSQVVGKTCIIGDDSQVSYLDNAGNYFSVVTGDPVPIE--- 338
Query: 594 GNTYSESPASFTPFIVPNKHLF--VRNPDDAWWRRYIVIPFDK 634
+ A F ++ + + RN + +RR +++PF+K
Sbjct: 339 AKGKQPTLAVFNKLVIQSTNFLPKFRNKSNGTYRRLLIVPFNK 381
>gi|168211076|ref|ZP_02636701.1| phage/plasmid primase domain, P4 family [Clostridium perfringens B
str. ATCC 3626]
gi|170710872|gb|EDT23054.1| phage/plasmid primase domain, P4 family [Clostridium perfringens B
str. ATCC 3626]
Length = 995
Score = 38.1 bits (87), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 52/241 (21%), Positives = 103/241 (42%), Gaps = 24/241 (9%)
Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF-GNQYVINAEASDIMQNRPPEAGK 548
VG L +Q+ G +GKSTL+ +++Y G + V N +I
Sbjct: 723 VGYLLTTNTASQKAFVFWGPARTGKSTLLWVVEYLLLGKKNVSNIPWQEIGDKFKT---- 778
Query: 549 ANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPAS---FT 605
L+G + S+ + K +TG D + A N + P + F+
Sbjct: 779 -----AELLGKLANVFSDLPSKSIDDTGIFKVVTGEDYLMAEKKNKNPFKFKPFARLVFS 833
Query: 606 PFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAK---KWFLKG 662
+P ++ + + ++RR I++PF + I + + L+ K+ E + W L+G
Sbjct: 834 CNELPRNYV---DRTEGFYRRLIIVPFSRQI--EKSKIDKALKYKFQREKEGILNWALEG 888
Query: 663 VKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYR 722
+K + E+ K+E ++ + +++++CC+I + L+ S S + Y Y+
Sbjct: 889 LKRLYENNFEFSENELTDGVKKEYKRENNNVISFVEECCEI-DGLF--SCSRIEIYEAYK 945
Query: 723 E 723
E
Sbjct: 946 E 946
>gi|110758340|ref|XP_624430.2| PREDICTED: hypothetical protein LOC552048 [Apis mellifera]
Length = 1173
Score = 38.1 bits (87), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 53/132 (40%), Gaps = 9/132 (6%)
Query: 55 GFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIK 114
FV EQ + F +++KD T N K F I T K K + P +++ G
Sbjct: 632 SFVPRDYEQKIKNFSVETKDVHTENANK--FNITTTTESTSTTIKSKFVFPSSLSRTGKP 689
Query: 115 KKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLF 174
K T S + DIL + + P T E+ W TP TP+ EE +
Sbjct: 690 IHKITTSPKPRTDILVTPKIRTGWPTRPTT--EFKWPTPS-----TTTPISIEELLTRAT 742
Query: 175 KFFQEITVPLVK 186
E+ VP+ K
Sbjct: 743 MSVSELVVPITK 754
>gi|253990202|ref|YP_003041558.1| hypothetical protein PAU_02725 [Photorhabdus asymbiotica subsp.
asymbiotica ATCC 43949]
gi|253781652|emb|CAQ84815.1| conserved hypothetical protein [Photorhabdus asymbiotica]
Length = 778
Score = 38.1 bits (87), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 51/232 (21%), Positives = 88/232 (37%), Gaps = 25/232 (10%)
Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF--------ES 479
+G +G+ +L T + + E ++ G F + + D ++ ++
Sbjct: 411 LIGFSNGVYELSTQKFIPHQPEHWLMNHNGIKFTQPAIGENLPDHAPDFYRWLSHAAGQN 470
Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFG--NQYVINAEASD 537
E M+ + M L Q FI + G GGSGKS + G N N A D
Sbjct: 471 ENKMNRIKAALFMILANRYDWQLFIEVTGEGGSGKSIFTYIATLLAGEHNTASGNMRALD 530
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
+ R GK SLI L ++ + E A IK +TG D + Y +
Sbjct: 531 EARGRYQFVGK---SLITLP-DQVKYVGE--------GAGIKAITGSDLIEIDGKYEKQF 578
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKL 647
S + N+ + + RR ++ PF+ P+ + +D +K+
Sbjct: 579 STIIKAVV-LATNNEPMSFTERNGGIARRRVIFPFNIPVKESEKDPQLPEKI 629
>gi|167044432|gb|ABZ09108.1| putative Poxvirus D5 protein-like protein [uncultured marine
crenarchaeote HF4000_APKG6D9]
Length = 435
Score = 38.1 bits (87), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 52/287 (18%), Positives = 109/287 (37%), Gaps = 15/287 (5%)
Query: 422 LDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEE 481
D+ + ++GIL+L+T Q + + + ++F+ + E+
Sbjct: 92 FDNHENLVNLRNGILNLQTQQLSPHSHNFLFRIQLPITYDQNATCEQFIRFLEQCHPDEK 151
Query: 482 VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQN 541
LL ++ G G +GKST + +I+ G V N D+ +
Sbjct: 152 NRITALEAFASTLLPNIHLEKMFMNVGSGANGKSTYLKVIEQFLGTDNVSNISIHDMESD 211
Query: 542 RPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESP 601
R +AG L+G I ++ + + A +K + D ++ + + ++
Sbjct: 212 RFAKAG--------LVGKFANIYADISRRELPELASVKAVISSDSISVQRKGEHRFTMRN 263
Query: 602 ASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD------ASFAQKLETKYTLEA 655
+ F N+ + A +RR ++I +++ +++D + ++L T+ L
Sbjct: 264 TAKLIFSC-NELPELGEDSHAVYRRLVLIEWNERFSHQDKHHKINPNLFKELTTEQELSG 322
Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCD 702
L ISK + E LK + Q D ++D C +
Sbjct: 323 ILNLLLQHTQKISKNGKLTYDETALKLRGIWAQKADPIGTFLDSCVE 369
>gi|18640342|ref|NP_570498.1| CMLV108 [Camelpox virus]
gi|18483018|gb|AAL73815.1|AF438165_105 putative NTPase [Camelpox virus M-96]
Length = 785
Score = 38.1 bits (87), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 94/220 (42%), Gaps = 28/220 (12%)
Query: 432 QDGILDLETGQ--KVKPTKELYITKSTG-----TPFVEGEPS-QEFLDLVSGYF----ES 479
++G+LDL G K+ T STG T FVE P +E +++++ E+
Sbjct: 416 KNGVLDLVDGMFYSGDDAKKYTCTVSTGFKFDDTKFVEDSPEMKELMNIINDIQPLTDEN 475
Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA--SD 537
++ + + + + L G K G +GKST L+K A G+ +V + +D
Sbjct: 476 KKNRELYEKTLSSCLCGATKGC-LTFFFGETATGKSTTKRLLKSAIGDLFVETGQIILTD 534
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNE-----NDEINAAKIKQMTGGDCMTARLN 592
++ P NP + + R V SE + + +I + IK++T C+ R
Sbjct: 535 VLDKGP------NPFIANMHLKRSVFCSELPDFACSGSKKIRSDNIKKLTEP-CVIGRPC 587
Query: 593 YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF 632
+ N + + K +F R D+A RR V+ F
Sbjct: 588 FSNKINNRNHATIIIDTNYKPVFDR-IDNALMRRIAVVRF 626
>gi|317057146|ref|YP_004105613.1| phage/plasmid primase, P4 family [Ruminococcus albus 7]
gi|315449415|gb|ADU22979.1| phage/plasmid primase, P4 family [Ruminococcus albus 7]
Length = 558
Score = 38.1 bits (87), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 56/264 (21%), Positives = 108/264 (40%), Gaps = 28/264 (10%)
Query: 432 QDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE-FLDLVSGYFESEEVMDYFTRCV 490
++G L L G V + + G + P E +L V ++VM +
Sbjct: 212 KNGTLHLAQGHFVFSQGKQFTMNRLGIEYRSDAPKPERWLKFVQELLNEQDVMT-LQEYM 270
Query: 491 GMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKAN 550
G L+ +AQ+ + I G GG GKS + ++ G + ++ S + A
Sbjct: 271 GYLLIPSTRAQKMLMISGNGGEGKSRVGKVLFEIMGYKNSVSGSVSGL-----DNGAAAR 325
Query: 551 PSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVP 610
+ ++L+G +I + + + +KQ+ +TA + SP SF +
Sbjct: 326 FNKVKLLGKLCMIDDDMDMSALEKTEFLKQL-----ITAEIPMEIEPKGSP-SFQALLYT 379
Query: 611 NKHLFVRNP-------DDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAK---KWFL 660
F NP + ++RR +++ KP+ +D + + L K E + +W L
Sbjct: 380 RVIAFGNNPISALYDRSEGFFRRQMIL-VAKPVP-KDRTADKHLTEKLLAEKEGIFRWCL 437
Query: 661 KGVKAYISKGLDVDIPEVCLKAKE 684
+G++ I+ + I + +AKE
Sbjct: 438 EGLERLIANDFEFTISD---QAKE 458
>gi|237710652|ref|ZP_04541133.1| phage/plasmid primase P4 [Bacteroides sp. 9_1_42FAA]
gi|229455374|gb|EEO61095.1| phage/plasmid primase P4 [Bacteroides sp. 9_1_42FAA]
Length = 545
Score = 38.1 bits (87), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 77/177 (43%), Gaps = 14/177 (7%)
Query: 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMG 558
K + + +RG G +GKS + I G + V N ++ K N + I G
Sbjct: 190 KMETMLVLRGSGSNGKSVVFETIMGILGRENVSNFGIGALITGNER---KKNIAFIN--G 244
Query: 559 SRIVIISETNEND-EINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHL--F 615
R+ SE + ++ +K + G+ AR YG+ ++ A P ++ N + +
Sbjct: 245 KRLNYCSEIQALEFGKDSDTLKSLISGEPTEARPIYGDNFT---AYNIPLLMANANQMPY 301
Query: 616 VRNPDDAWWRRYIVIPFDK--PIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKG 670
+++ RR +IPF+ P A + ++ LE +Y W L+G +I+ G
Sbjct: 302 LKDWSYGMRRRICIIPFEVEIPKARQKKELSRDLEAEYP-AIFNWILEGRDRFIANG 357
>gi|19718057|gb|AAG37582.1| CMP107R [Camelpox virus CMS]
Length = 785
Score = 38.1 bits (87), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 54/220 (24%), Positives = 94/220 (42%), Gaps = 28/220 (12%)
Query: 432 QDGILDLETGQ--KVKPTKELYITKSTG-----TPFVEGEPS-QEFLDLVSGYF----ES 479
++G+LDL G K+ T STG T FVE P +E +++++ E+
Sbjct: 416 KNGVLDLVDGMFYSGDDAKKYTCTVSTGFKFDDTKFVEDSPEMKELMNIINDIQPLTDEN 475
Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA--SD 537
++ + + + + L G K G +GKST L+K A G+ +V + +D
Sbjct: 476 KKNRELYEKTLSSCLCGATKGC-LTFFFGETATGKSTTKRLLKSAIGDLFVETGQIILTD 534
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNE-----NDEINAAKIKQMTGGDCMTARLN 592
++ P NP + + R V SE + + +I + IK++T C+ R
Sbjct: 535 VLDKGP------NPFIANMHLKRSVFCSELPDFACSGSKKIRSDNIKKLTEP-CVIGRPC 587
Query: 593 YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF 632
+ N + + K +F R D+A RR V+ F
Sbjct: 588 FSNKINNRNHATIIIDTNYKPVFDR-IDNALMRRIAVVRF 626
>gi|307710139|ref|ZP_07646583.1| hypothetical protein SMSK564_1413 [Streptococcus mitis SK564]
gi|307619119|gb|EFN98251.1| hypothetical protein SMSK564_1413 [Streptococcus mitis SK564]
Length = 513
Score = 38.1 bits (87), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 67/290 (23%), Positives = 123/290 (42%), Gaps = 42/290 (14%)
Query: 407 QSLEAGSIFSITSDLLDS-----SSRFLGEQDGILDLETGQKVKPTKELYIT-------K 454
+S + IFS+ S + + SR++ + I D G +K + + T
Sbjct: 128 RSNDISEIFSVLSCICKNVSIYQGSRYIALGNCIYDTYYGDGMKYSPSIVFTHKVQVNYN 187
Query: 455 STGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGK 514
S T V G+ S + ++ F ++ + + +A++ G +R I + G GG+GK
Sbjct: 188 SEATSPVLGDWSID--SWLTELFNNDAELIHLAWQTILAVIRGYADERIIWLIGKGGTGK 245
Query: 515 STLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI- 573
+ L+ G IN + +++ GK + +L+G +V I + N D++
Sbjct: 246 GSFQELLINLVGR---INTASMKLIELE----GKNRFATSQLIGKHLV-IGDDNPIDKVV 297
Query: 574 -NAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV--PNKHLFVRNPDDAWWRRYIVI 630
+ + + + D +T YS A TP IV N+ + ++ +A RR ++
Sbjct: 298 TDPSTMFSLVTHDIVTIEKKGKQAYS---ARLTPVIVQSSNRLIKIQGDKEAIARRTFIL 354
Query: 631 PFDKPIANRDASFAQKLETKYTLEAKKWFLK--GVKAYISK-GLDVDIPE 677
PF N+D Y E K+ +LK V Y+ K L+ DI +
Sbjct: 355 PFVSEF-NKDG---------YKREIKQVYLKRQDVLEYVLKNALEYDISD 394
>gi|225194770|gb|ACN81893.1| DNA-dependent NTPase [Skunkpox virus]
Length = 785
Score = 38.1 bits (87), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 91/220 (41%), Gaps = 28/220 (12%)
Query: 432 QDGILDLETGQ--KVKPTKELYITKSTG-----TPFVEGEPSQEFL-----DLVSGYFES 479
++G+LDL G K+ T STG T FVE P E L D+ E+
Sbjct: 416 KNGVLDLVDGMFYSGDEAKKYTCTVSTGFRFDDTKFVEESPEMEELVNIINDIQPLTDEN 475
Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA--SD 537
++ + + + + L G K G +GKST L+K A G+ +V + +D
Sbjct: 476 KKNRELYEKTLSSCLCGTTKGC-LTFFFGETATGKSTTKRLLKSAIGDLFVETGQTILTD 534
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNE-----NDEINAAKIKQMTGGDCMTARLN 592
++ P NP + + R V SE + + +I + IK++T C+ R
Sbjct: 535 VLDKGP------NPFIANMHLKRSVFCSELPDFACSGSKKIRSDNIKKLTEP-CVIGRPC 587
Query: 593 YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF 632
+ N + + K +F R D+A RR V+ F
Sbjct: 588 FSNKINNRNHATIIIDTNYKPVFDR-IDNALMRRIAVVRF 626
>gi|237720962|ref|ZP_04551443.1| phage/plasmid primase P4 [Bacteroides sp. 2_2_4]
gi|229449797|gb|EEO55588.1| phage/plasmid primase P4 [Bacteroides sp. 2_2_4]
Length = 524
Score = 38.1 bits (87), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 77/177 (43%), Gaps = 14/177 (7%)
Query: 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMG 558
K + + +RG G +GKS + I G + V N ++ K N + I G
Sbjct: 169 KMETMLVLRGSGSNGKSVVFETIMGILGRENVSNFGIGALITGNER---KKNIAFIN--G 223
Query: 559 SRIVIISETNEND-EINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHL--F 615
R+ SE + ++ +K + G+ AR YG+ ++ A P ++ N + +
Sbjct: 224 KRLNYCSEIQALEFGKDSDTLKSLISGEPTEARPIYGDNFT---AYNIPLLMANANQMPY 280
Query: 616 VRNPDDAWWRRYIVIPFDK--PIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKG 670
+++ RR +IPF+ P A + ++ LE +Y W L+G +I+ G
Sbjct: 281 LKDWSYGMRRRICIIPFEVEIPKARQKKELSRDLEAEYP-AIFNWILEGRDRFIANG 336
>gi|170022873|ref|YP_001719378.1| P4 family phage/plasmid primase [Yersinia pseudotuberculosis YPIII]
gi|169749407|gb|ACA66925.1| phage/plasmid primase, P4 family [Yersinia pseudotuberculosis
YPIII]
Length = 477
Score = 38.1 bits (87), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 54/243 (22%), Positives = 99/243 (40%), Gaps = 26/243 (10%)
Query: 421 LLDSSSR-FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-- 477
++ +++R +G +G+ D G + +E ++ ++ F++ E E LD S F
Sbjct: 106 IMGTTARNLIGFSNGVFDTREGLFREHRQEDWLLIASDVEFIQAEEG-ESLDTHSPAFWK 164
Query: 478 -------ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530
+ D + M + Q F+ I G GGSGKS L + G
Sbjct: 165 WLNWSTAGNARKTDRVLAALYMVMANRYDWQLFLEITGAGGSGKSVLAEICTMLAGKANT 224
Query: 531 INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR 590
++A + + R +LI +G ++I+ + + + A IK +TGGD +
Sbjct: 225 VSASMKALEEPR-------ERALI--VGYSLIIMPDMSRYAG-DGAGIKAITGGDKVAID 274
Query: 591 LNYGNTYSES-PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK--PIANRDASFAQKL 647
+ YS PA V N + + RR ++ F + P RD ++K+
Sbjct: 275 PKHKPPYSTRIPAVI--LAVNNNAMSFSDRSGGISRRRVIFNFSQVVPENERDPMLSEKI 332
Query: 648 ETK 650
E +
Sbjct: 333 EAE 335
>gi|86158263|ref|YP_465048.1| hypothetical protein Adeh_1839 [Anaeromyxobacter dehalogenans
2CP-C]
gi|85774774|gb|ABC81611.1| conserved hypothetical protein [Anaeromyxobacter dehalogenans
2CP-C]
Length = 751
Score = 37.7 bits (86), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 24/47 (51%)
Query: 226 HDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTF 272
HDEW+ V MA+H GS++G + WS G Y +W +F
Sbjct: 222 HDEWLRVGMALHFGFEGSAEGLALWNEWSAGGGKYKNGEPADRWRSF 268
>gi|125625287|ref|YP_001033770.1| hypothetical protein llmg_2534 [Lactococcus lactis subsp. cremoris
MG1363]
gi|124494095|emb|CAL99096.1| conserved hypothetical protein [Lactococcus lactis subsp. cremoris
MG1363]
gi|300072099|gb|ADJ61499.1| hypothetical protein LLNZ_13090 [Lactococcus lactis subsp. cremoris
NZ9000]
Length = 542
Score = 37.7 bits (86), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 45/223 (20%), Positives = 93/223 (41%), Gaps = 28/223 (12%)
Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKST---------GTPFVEGEPSQEFL-DLV 473
+ + + +GI + +T Q+++P Y+ ST P + G ++L DL+
Sbjct: 175 AEAHLIPVANGIFNKKT-QQLEPFSPKYVFTSTIATKYNAKAKAPNINGWNIDDWLNDLM 233
Query: 474 SGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
SG +E++ + + + G ++ I + G G GK T +LI G + V +
Sbjct: 234 SG---DKELVKLLWQVISASTNGNYSYRKGIWLVGKGNDGKGTFQSLIMNLIGRENVASV 290
Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593
+A + +L +++G VI ++ + NA + GD +
Sbjct: 291 KAEQFSERF---------ALSQVVGKTCVIGDDSQVSYLDNAGNYFSVVTGDPVPIE--- 338
Query: 594 GNTYSESPASFTPFIVPNKHLF--VRNPDDAWWRRYIVIPFDK 634
+ A F ++ + + RN + +RR +++PF+K
Sbjct: 339 AKGKQPTLAVFNKLVIQSTNFLPKFRNKSNGTYRRLLIVPFEK 381
>gi|78212114|ref|YP_380893.1| ATPase-like [Synechococcus sp. CC9605]
gi|78196573|gb|ABB34338.1| ATPase-like [Synechococcus sp. CC9605]
Length = 902
Score = 37.7 bits (86), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 87/427 (20%), Positives = 166/427 (38%), Gaps = 39/427 (9%)
Query: 361 SMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSD 420
+MK +V DL + NK+ + F F+T S+ KS+ + LE ++T+D
Sbjct: 470 AMKREVADLLLKCFSYNKDEEK-VFRFST---------ASRVKSSIEWLE-----TMTAD 514
Query: 421 LLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPF----VEGEPS-QEFLDLVSG 475
+ + +G ++ G+ V E +T S F VE P +F+ G
Sbjct: 515 AEMDQTPAIAFANGTYLIDKGELVPHKPEYRLTYSIQGDFIPDCVECPPHLHDFIVSSFG 574
Query: 476 YFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535
E V V L ++ + + G GSGK L LI+ F +++
Sbjct: 575 DHYVEPVQQLLRYMVDPTL----PNRKIVMVIGPSGSGKGVLERLIEKLFPPS-CVSSIT 629
Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595
S I + PE + S G ++V + + + I M G M R + +
Sbjct: 630 SSIKEINSPEKIRQYVS-----GKQLVAFPDV-QGLQTGVTTIYSMVDGGLMAQRNLFTD 683
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
+ I ++ N RR +++ +P DA QKL +
Sbjct: 684 DTEGVVFTGRVVICSSQAPQFENAGSGMARRALILETQRPAEKPDADLDQKLAGELG-SI 742
Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCD-IGENLWEESHSL 714
W L+ A + + L V + + A+ D + ++D+CC+ G + + L
Sbjct: 743 VSWALQAKHADVKRVL-VSGNQTFIDAQHNVEADMDVVRQFLDNCCEPCGGDYMPKLGVL 801
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRI---IKGLKL 771
+++ ++ E + Y K ++ RT+ +KQ +R + +K++ + G ++
Sbjct: 802 YETFKQFCE-DFGY-TKVLNRRTLLTRIKQALPNLHTQRRSVPGTNSTKKVNPQLFGFRI 859
Query: 772 KPAFESV 778
+P +
Sbjct: 860 RPEVDCA 866
>gi|251777906|ref|ZP_04820826.1| conserved hypothetical protein [Clostridium botulinum E1 str. 'BoNT
E Beluga']
gi|243082221|gb|EES48111.1| conserved hypothetical protein [Clostridium botulinum E1 str. 'BoNT
E Beluga']
Length = 643
Score = 37.7 bits (86), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 73/183 (39%), Gaps = 5/183 (2%)
Query: 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSR 560
Q I + G +GKST N++K F N+ V+ ++ + + L L R
Sbjct: 305 QSAIFMIGTRATGKSTFKNIMKDLFKNENVVIPYNYLTTSHKGNDDKSRDDILASLDNKR 364
Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
I SE + I++A+ K + +AR + N D
Sbjct: 365 IAFCSEGEDEQTISSARFKTLLSNSEESARKTGKELMEVNLKGLDIIFDTNSIPSFSTMD 424
Query: 621 DAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEV 678
A RR + + FDKPI+ R+A + ++ +F+ A I K L +IP+
Sbjct: 425 GAISRRLMFVKFDKPISIEKRNADYYKEEIAPNFDYVFSYFVYRAIAMIGKKL--EIPQ- 481
Query: 679 CLK 681
C+K
Sbjct: 482 CIK 484
>gi|210623491|ref|ZP_03293836.1| hypothetical protein CLOHIR_01786 [Clostridium hiranonis DSM 13275]
gi|210153549|gb|EEA84555.1| hypothetical protein CLOHIR_01786 [Clostridium hiranonis DSM 13275]
Length = 184
Score = 37.7 bits (86), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 30/132 (22%), Positives = 58/132 (43%), Gaps = 16/132 (12%)
Query: 73 KDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCG 132
+DEK +T++ P+V G P P ++++ I K+ +S D
Sbjct: 12 EDEKDGSTYRYVLGEKGENPLVVFGINPSTATPEKLDQTMIVVKRLVDSENNDYDG---- 67
Query: 133 QYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSII 192
++ N++P+ TT P VE + E+++E + + +E+T +DKK +
Sbjct: 68 --YIMLNLYPQR------TTDPSGLHVEKSDYAYEKNLEVISGYIKELT----RDKKCVD 115
Query: 193 PSKTWTNNNNRQ 204
W N +R+
Sbjct: 116 IWAAWGGNIDRR 127
>gi|149017871|ref|ZP_01834330.1| putative phage replication protein [Streptococcus pneumoniae
SP23-BS72]
gi|147931435|gb|EDK82413.1| putative phage replication protein [Streptococcus pneumoniae
SP23-BS72]
Length = 492
Score = 37.7 bits (86), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 46/221 (20%), Positives = 88/221 (39%), Gaps = 27/221 (12%)
Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPF---------VEGEPSQEFLDLVSG 475
SS + Q+GI++LET + + + IT T + EG+ ++L+ ++
Sbjct: 131 SSNLIPVQNGIINLETKELFPFSPKYVITSKISTAYHAPKRVPTDREGKTFDDWLNSIAC 190
Query: 476 YFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535
E++ F + + A+ + +F G G +GK T + G
Sbjct: 191 --NDSELVTLFWQIILEAINSNHTRNKFAIFYGDGNNGKGTFQRFLINLIGE-------- 240
Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595
S+I +P + + + +L L+G I E N + + +T GD +
Sbjct: 241 SNISALKPAQFAEKH-NLETLVGKVCNIGDEAPNEYLKNPSDLMSITSGDTVLVNPKGRP 299
Query: 596 TYSESPASFTPF---IVPNKHLFVRNPDDAWWRRYIVIPFD 633
+ + F F +PN N W+RR +++PF+
Sbjct: 300 AFEATFKLFNIFSGNYIPNGG----NKTKGWYRRIMIVPFN 336
>gi|307126159|ref|YP_003878190.1| prophage Sa05, DNA primase, P4 family [Streptococcus pneumoniae
670-6B]
gi|306483221|gb|ADM90090.1| prophage Sa05, DNA primase, P4 family [Streptococcus pneumoniae
670-6B]
Length = 492
Score = 37.4 bits (85), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 46/221 (20%), Positives = 88/221 (39%), Gaps = 27/221 (12%)
Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPF---------VEGEPSQEFLDLVSG 475
SS + Q+GI++LET + + + IT T + EG+ ++L+ ++
Sbjct: 131 SSNLIPVQNGIINLETKELFPFSPKYVITSKISTAYHAPKRVPTDREGKTFDDWLNSIAC 190
Query: 476 YFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535
E++ F + + A+ + +F G G +GK T + G
Sbjct: 191 --NDSELVTLFWQIILEAINSNHTRNKFAIFYGDGNNGKGTFQRFLINLIGE-------- 240
Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595
S+I +P + + + +L L+G I E N + + +T GD +
Sbjct: 241 SNISALKPAQFAEKH-NLETLVGKVCNIGDEAPNEYLKNPSDLMSITSGDTVLVNPKGRP 299
Query: 596 TYSESPASFTPF---IVPNKHLFVRNPDDAWWRRYIVIPFD 633
+ + F F +PN N W+RR +++PF+
Sbjct: 300 AFEATFKLFNIFSGNYIPNGG----NKTKGWYRRIMIVPFN 336
>gi|261492854|ref|ZP_05989401.1| alpha replication protein of prophage CP-933I [Mannheimia
haemolytica serotype A2 str. BOVINE]
gi|261311536|gb|EEY12692.1| alpha replication protein of prophage CP-933I [Mannheimia
haemolytica serotype A2 str. BOVINE]
Length = 313
Score = 37.4 bits (85), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 49/222 (22%), Positives = 93/222 (41%), Gaps = 21/222 (9%)
Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPF---VEGEPSQEFLDLVSGYFESE-EVM 483
F+ +G+L+ +TG+ + P E Y ++ PF +E +P F ++ +++ +
Sbjct: 105 FIPFLNGVLNRKTGEFL-PHNEKYFLRNV-LPFDYSLEDKPMPNFEKWINWVSQNDKQKK 162
Query: 484 DYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP 543
M L + Q F+ I GVGGSGKS + G + + D+
Sbjct: 163 RTILAAFYMILTNSYEWQLFLEITGVGGSGKSIFNEIAIMLVGEENSTSVYLKDL----- 217
Query: 544 PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPAS 603
+ S I+L+ +I+I + + A +K +TG D M Y N + S
Sbjct: 218 ----EKASSRIKLL-DKILIFAPDQGRIVTDGAVLKGLTGDDVMHFEPKYKNAFDARVKS 272
Query: 604 FTPFIVPNKH--LFVRNPDDAWWRRYIVIPFDKPIANRDASF 643
F++ N +F N + RR ++ F + + ++ +
Sbjct: 273 I--FLMTNNEPIIFTEN-NGGIARRRVLFHFSEKVPEKNERY 311
>gi|291539832|emb|CBL12943.1| phage/plasmid primase, P4 family, C-terminal domain [Roseburia
intestinalis XB6B4]
Length = 516
Score = 37.4 bits (85), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 46/222 (20%), Positives = 88/222 (39%), Gaps = 15/222 (6%)
Query: 432 QDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE-FLD--LVSGYFESEEVMDYFTR 488
Q+GI + E + T + + ++ E Q ++D ++ + ++ F +
Sbjct: 176 QNGIYNAEKDALINSTSKYPVLFEINAEYLGNEEVQTPYMDKIIMQATGGDVDTLERFYQ 235
Query: 489 CVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGK 548
C+G G +A++F SGKS + I G S I N K
Sbjct: 236 CLGYIYSQGTEAKKFFVFGTAPDSGKSIIGEFIAKTIGE-----GNISTISLNEFGSRFK 290
Query: 549 ANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFI 608
R++ + + + + + K+ +TG + Y + + F+
Sbjct: 291 LGSISQRILNYNMDLPAGMLDKKSVQLLKL--LTGDAKIDCEEKY--VQNRTVTHHCKFL 346
Query: 609 VPNKH-LFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKL 647
H + ++ D+A++ R ++IPF K IA NRD S +KL
Sbjct: 347 FATNHPIQLKEDDEAFYHRMLLIPFVKSIADENRDYSMPEKL 388
Searching..................................................done
Results from round 2
>gi|254781225|ref|YP_003065638.1| P4 family phage/plasmid primase [Candidatus Liberibacter asiaticus
str. psy62]
gi|254040902|gb|ACT57698.1| P4 family phage/plasmid primase [Candidatus Liberibacter asiaticus
str. psy62]
Length = 789
Score = 1040 bits (2689), Expect = 0.0, Method: Composition-based stats.
Identities = 789/789 (100%), Positives = 789/789 (100%)
Query: 1 MPVMQWKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGV 60
MPVMQWKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGV
Sbjct: 1 MPVMQWKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGV 60
Query: 61 GEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120
GEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE
Sbjct: 61 GEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120
Query: 121 STQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEI 180
STQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEI
Sbjct: 121 STQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEI 180
Query: 181 TVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHET 240
TVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHET
Sbjct: 181 TVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHET 240
Query: 241 RGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPK 300
RGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPK
Sbjct: 241 RGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPK 300
Query: 301 GLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLV 360
GLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLV
Sbjct: 301 GLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLV 360
Query: 361 SMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSD 420
SMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSD
Sbjct: 361 SMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSD 420
Query: 421 LLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESE 480
LLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESE
Sbjct: 421 LLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESE 480
Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540
EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ
Sbjct: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540
Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600
NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES
Sbjct: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600
Query: 601 PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFL 660
PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFL
Sbjct: 601 PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFL 660
Query: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSE 720
KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSE
Sbjct: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSE 720
Query: 721 YREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDD 780
YREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDD
Sbjct: 721 YREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDD 780
Query: 781 NSNIIDFKR 789
NSNIIDFKR
Sbjct: 781 NSNIIDFKR 789
>gi|317120690|gb|ADV02513.1| phage associated primase [Liberibacter phage SC1]
gi|317120834|gb|ADV02655.1| phage associated primase [Candidatus Liberibacter asiaticus]
Length = 790
Score = 1025 bits (2649), Expect = 0.0, Method: Composition-based stats.
Identities = 766/790 (96%), Positives = 774/790 (97%), Gaps = 1/790 (0%)
Query: 1 MPVMQWKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGV 60
MP MQWKEQAKQAIHNGFKLIPLRL DKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGV
Sbjct: 1 MPGMQWKEQAKQAIHNGFKLIPLRLRDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGV 60
Query: 61 GEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120
GEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE
Sbjct: 61 GEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120
Query: 121 STQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEI 180
STQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEI
Sbjct: 121 STQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEI 180
Query: 181 TVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHET 240
TVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHET
Sbjct: 181 TVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHET 240
Query: 241 RGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPK 300
RGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPK
Sbjct: 241 RGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPK 300
Query: 301 GLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLV 360
GLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLV
Sbjct: 301 GLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLV 360
Query: 361 SMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSD 420
SMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSD
Sbjct: 361 SMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSD 420
Query: 421 LLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESE 480
LLDSSSRFLGEQDGILDLETGQK+KPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESE
Sbjct: 421 LLDSSSRFLGEQDGILDLETGQKIKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESE 480
Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540
EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ
Sbjct: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540
Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600
NRPPEAGKANPSLIRLMG+R+VIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES
Sbjct: 541 NRPPEAGKANPSLIRLMGARVVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600
Query: 601 PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFL 660
PASFTPFIV NKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFL
Sbjct: 601 PASFTPFIVSNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFL 660
Query: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSE 720
KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSE
Sbjct: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSE 720
Query: 721 YREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEK-EWKSKRIIKGLKLKPAFESVD 779
YREQELNYDRKRISTRTV LNLKQKGF G + EK + R+I+GLKLKPAFESVD
Sbjct: 721 YREQELNYDRKRISTRTVALNLKQKGFKAGRQWEKPRPNRGRYLRVIEGLKLKPAFESVD 780
Query: 780 DNSNIIDFKR 789
DN+NIIDFKR
Sbjct: 781 DNNNIIDFKR 790
>gi|317120732|gb|ADV02554.1| phage associated primase/P4 family phage/plasmid primase
[Liberibacter phage SC2]
gi|317120793|gb|ADV02614.1| phage associated primase [Candidatus Liberibacter asiaticus]
Length = 790
Score = 964 bits (2491), Expect = 0.0, Method: Composition-based stats.
Identities = 649/790 (82%), Positives = 700/790 (88%), Gaps = 1/790 (0%)
Query: 1 MPVMQWKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGV 60
M MQWKEQAKQAIHNGFKLIPLR DKRP RLGKWEEQLLSSE+IDKLPACGFG VCGV
Sbjct: 1 MSGMQWKEQAKQAIHNGFKLIPLRFRDKRPLRLGKWEEQLLSSEEIDKLPACGFGLVCGV 60
Query: 61 GEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120
GEQPLYAFDIDSKDEKT N FKDTFEILHGTPIVRIGQKPKILIPFRM+K+G+KKKKT E
Sbjct: 61 GEQPLYAFDIDSKDEKTTNNFKDTFEILHGTPIVRIGQKPKILIPFRMDKDGVKKKKTPE 120
Query: 121 STQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEI 180
S QGHLDILG GQYFVAYNIHP TK+EYTWTTPPHRFK ED PLLS+EDVE K FQ+
Sbjct: 121 SPQGHLDILGYGQYFVAYNIHPITKEEYTWTTPPHRFKAEDLPLLSKEDVECFSKAFQDF 180
Query: 181 TVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHET 240
T PLVK KKSI P K NNNNR YTNREITAFLSCF E+FYNGSHD+WIPV+MAVHHET
Sbjct: 181 TTPLVKAKKSIKPVKLGKNNNNRYYTNREITAFLSCFNEDFYNGSHDDWIPVIMAVHHET 240
Query: 241 RGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPK 300
RGS KG++IARRWSKQGSTYDE NFNYKWDTFD EE GD AKKRSTF SLFYHH KLIP
Sbjct: 241 RGSDKGQDIARRWSKQGSTYDEANFNYKWDTFDCEENGDPAKKRSTFASLFYHHRKLIPD 300
Query: 301 GLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLV 360
GLL RFSDAYNKA+FS++K GHFLY +D K+WYK+D+ N YIW +T DKI IM+FLV
Sbjct: 301 GLLEDRFSDAYNKALFSVFKLGHFLYASDIKSWYKRDETNRYIWRITDDKIAGYIMDFLV 360
Query: 361 SMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSD 420
+ K D FDL EE + + K+PR + Y ++N + S +KSTA +LE+ S F ITSD
Sbjct: 361 AQKNDSFDLCEELVNEDDTKKNPRALYFKVYDKRNACQYSTSKSTANALESKSHFHITSD 420
Query: 421 LLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESE 480
D++ R++GE+DG+LDLETGQ++ PT+ELYITKSTGTPFVEGEPSQEFLDLVSGYFESE
Sbjct: 421 RFDANLRYIGEKDGVLDLETGQRITPTEELYITKSTGTPFVEGEPSQEFLDLVSGYFESE 480
Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540
EVM++FTRCVGMALLGGN+AQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ
Sbjct: 481 EVMNFFTRCVGMALLGGNEAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540
Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600
NRPPEAGKANPSLIRLMG+R+VIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES
Sbjct: 541 NRPPEAGKANPSLIRLMGARVVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600
Query: 601 PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFL 660
PASFTPFIV NKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFL
Sbjct: 601 PASFTPFIVSNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFL 660
Query: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSE 720
KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSE
Sbjct: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSE 720
Query: 721 YREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEK-EWKSKRIIKGLKLKPAFESVD 779
YREQELNYDRKRISTRTV LNLKQKGF G + EK + R+I+GLKLKPAFESVD
Sbjct: 721 YREQELNYDRKRISTRTVALNLKQKGFKAGRQWEKPRPNRGRYLRVIEGLKLKPAFESVD 780
Query: 780 DNSNIIDFKR 789
DN+NIIDFKR
Sbjct: 781 DNNNIIDFKR 790
>gi|315121955|ref|YP_004062444.1| P4 family phage/plasmid primase [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495357|gb|ADR51956.1| P4 family phage/plasmid primase [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 686
Score = 800 bits (2066), Expect = 0.0, Method: Composition-based stats.
Identities = 511/686 (74%), Positives = 592/686 (86%), Gaps = 4/686 (0%)
Query: 108 MNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSE 167
M K GIKKK+T +S QGHLDILG GQYFVAYNIHPKTK+EYTWTTPP FK E+ PLLSE
Sbjct: 1 MAKAGIKKKQTPKSQQGHLDILGGGQYFVAYNIHPKTKEEYTWTTPPDAFKAEELPLLSE 60
Query: 168 EDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHD 227
EDVE+LF+FF+E T P+VK KK I K NR+YTNREITAFLSCFGEEF NG+HD
Sbjct: 61 EDVEHLFEFFKESTTPVVKAKKEIKSPKEGNTKGNRRYTNREITAFLSCFGEEFTNGTHD 120
Query: 228 EWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTF 287
EWIPVVMA+HHET+GS +GKE+ARRWSK+GS+YDEENFNYKW TFD EE GD+ KKRSTF
Sbjct: 121 EWIPVVMAIHHETQGSHEGKELARRWSKRGSSYDEENFNYKWSTFDCEEEGDSEKKRSTF 180
Query: 288 TSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLT 347
S+FYHH KLIP G+L RFSDAYNKAMFS++K G+FLY +DTKAWYKKDK N YIW +T
Sbjct: 181 ASIFYHHRKLIPDGILEERFSDAYNKAMFSVFKSGYFLYASDTKAWYKKDKTNRYIWRIT 240
Query: 348 LDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQ 407
DKI IM FL+SMK+D FDL EE E+ + K+PR + Y ++N E S++KSTA
Sbjct: 241 DDKIAGYIMEFLISMKKDAFDLCEEIENKDGTKKNPRALYLKAYAKRNACEQSRSKSTAN 300
Query: 408 SLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ 467
++EA S F I+S++ D++ R++GE+DGILD+ETGQ++ P +ELYITKSTGTPFVEG+PS
Sbjct: 301 AIEAKSPFHISSEIFDANLRYIGERDGILDMETGQQITPKEELYITKSTGTPFVEGKPSA 360
Query: 468 EFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527
EF++LVS YFES+EVM++FTRCVGMALLGGN+AQRFIHIRGVGGSGKSTLMNLIK+AFGN
Sbjct: 361 EFMNLVSNYFESKEVMNFFTRCVGMALLGGNEAQRFIHIRGVGGSGKSTLMNLIKFAFGN 420
Query: 528 QYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCM 587
QYVINAEASD+MQNRPPEAGKANPSLIRLMGSR+VIISETNENDE+NAAKIKQMTGGDCM
Sbjct: 421 QYVINAEASDVMQNRPPEAGKANPSLIRLMGSRVVIISETNENDELNAAKIKQMTGGDCM 480
Query: 588 TARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKL 647
TARLNYGNTYSE+ ASFTPFIV NKHLFVRNPDDAWWRRYIVIPFDKPIANRDA+FAQKL
Sbjct: 481 TARLNYGNTYSEARASFTPFIVSNKHLFVRNPDDAWWRRYIVIPFDKPIANRDATFAQKL 540
Query: 648 ETKYTLEAKKWFLKGVKAYISKG--LDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE 705
ET+Y LEAKKWF++G+KAYI G LDV +PEVC+ AKEEER+GTDTYQAWIDDCCD+G
Sbjct: 541 ETEYALEAKKWFMEGIKAYIRNGRNLDVYVPEVCINAKEEERRGTDTYQAWIDDCCDVGS 600
Query: 706 NLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKE-WKSKR 764
+LWEES LAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGG + +K + K
Sbjct: 601 DLWEESRILAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGREWDKSSSDRGKYLS 660
Query: 765 IIKGLKLKPAFESVDDN-SNIIDFKR 789
+IKGLKLKPAFE +++ +N++DFK+
Sbjct: 661 LIKGLKLKPAFEDIENEPNNVLDFKK 686
>gi|313903458|ref|ZP_07836849.1| phage/plasmid primase, P4 family [Thermaerobacter subterraneus DSM
13965]
gi|313466279|gb|EFR61802.1| phage/plasmid primase, P4 family [Thermaerobacter subterraneus DSM
13965]
Length = 849
Score = 478 bits (1231), Expect = e-132, Method: Composition-based stats.
Identities = 154/799 (19%), Positives = 278/799 (34%), Gaps = 78/799 (9%)
Query: 8 EQAKQAIHNGFKLIPL-RLGD-----------KRPQRLGKW----------EEQLLSSEK 45
+A + + G+ ++PL D P+ +GK ++ +
Sbjct: 9 TEAVRYLKRGWTIVPLCWPTDGGCGAGHPTCSADPRHIGKAPIKGSTLFRPGQEAEAERF 68
Query: 46 IDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIP 105
+ P G E L DID D + V G+ I
Sbjct: 69 WSEYPKANIGIRL--EESGLIVVDIDDPDAVPPEDRQRFDL---YEDYVSTGRG--KHIY 121
Query: 106 FRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLL 165
FR N I K + +I G Y VA ++ KEY W+ E
Sbjct: 122 FRRNDLPIPKAAIDLRKERGWEIRLRG-YVVAPPSRHRSGKEYRWSRGIEVVHPE----- 175
Query: 166 SEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGS 225
+ + + + E V V +P + RE+ F + G S
Sbjct: 176 VPDWIAEIIRAASEQKVQDVNIDWDHLPDVD-ISRIPLSIETRELIRFGAPKGAR----S 230
Query: 226 HDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEE--NFNYKWDTFDFEEIGDTAKK 283
W + + ++ + E+ +K+ + ++ +
Sbjct: 231 EAIWRVIGDLIRAGCDDATVAAVLMNPEHLISEKIREKAPEQQHKYVEYQIAKMRSEFRS 290
Query: 284 RSTFTSLFYHHGKLIPKGLLA-SRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVY 342
++ + + + + + A F+D N + Y + + W D
Sbjct: 291 PASKGAEWTNMDQSVASAQPAMEHFTDLGNAKRLVRRHGKNLRYCPELEKWLVYDGRR-- 348
Query: 343 IWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKA 402
W + T +M + ++ + + D +K K ++ N+ E SK
Sbjct: 349 -WVVDK---TGEVMRRAKETVQSMYQEAAQIADEDKRKKLVQWALNS-------ESASKL 397
Query: 403 KSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVE 462
K + + + LD L +G +DL +G+ ++ ITK +
Sbjct: 398 KHMVELAQTEPGIPVKPSQLDRDPWLLNCLNGTIDLRSGELRPHRRDDLITKLVPVEYDP 457
Query: 463 GEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLI 521
+ + + ++ ++++ R VG L G Q + G G +GKST + ++
Sbjct: 458 DAKAPLWEKFLHRIMNGNQRLIEFLQRAVGYTLTGDTSEQVLFLLYGTGANGKSTFLEVL 517
Query: 522 KYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM 581
+ FG+ Y AE S + + + L RL+G R V +E E + IKQ+
Sbjct: 518 RSLFGD-YGQQAEFSTFLAR---DTERVRNDLARLVGKRFVSAAEAEEGRRWSEVVIKQL 573
Query: 582 TGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NR 639
TGGD +TAR Y + PA ++ N VR D A WRR +IPF I R
Sbjct: 574 TGGDTITARFLYREYFEFRPAM-KLWLAANHKPRVRGTDYAIWRRLRLIPFTVTIPEGER 632
Query: 640 DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD 699
D + KL + W ++G ++ +GLD P ++A + R+ D +I+
Sbjct: 633 DRDLSSKLCQEL-QGILAWAVQGCLKWLDRGLD--APPEVMEATNQYREEQDVIAQFIEA 689
Query: 700 CCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKE 759
C N + L K+Y ++ E + + +S L +KGF K+
Sbjct: 690 ACVPHPNTRVNATDLYKAYLKWCE---DVGERPVSLTEFGERLNEKGFP--------TKK 738
Query: 760 WKSKRIIKGLKLKPAFESV 778
+ + G+ L E
Sbjct: 739 IQGLKYRLGIGLLANAEKA 757
>gi|281419305|ref|ZP_06250320.1| phage/plasmid primase, P4 family [Clostridium thermocellum JW20]
gi|281406925|gb|EFB37188.1| phage/plasmid primase, P4 family [Clostridium thermocellum JW20]
Length = 719
Score = 476 bits (1224), Expect = e-132, Method: Composition-based stats.
Identities = 160/798 (20%), Positives = 269/798 (33%), Gaps = 112/798 (14%)
Query: 4 MQWKEQAKQAIHNGFKLIPLR-----------------LGDKRPQRLGKWEEQLLSSEKI 46
M + A + ++PL K P G ++ E+I
Sbjct: 3 MTMMDAAIKYAEANIPVMPLHWICEDGSCSCKAGSDCDSKGKHPLYTGWYKNSTADMEQI 62
Query: 47 DKL----PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKI 102
K P G G L D+D ++T + + T L T G
Sbjct: 63 RKWWTKTPNANIGIPTGEKSGWLV-LDVDDGGDETISALEATHGKLPDTVTAVTGS---G 118
Query: 103 LIPFRMNKEGIKKKKTTESTQGHLDILGCGQ-YFVAYNIHPKTKKEYTWTT--PPHRFKV 159
+ + LD G VA +IH + +Y W P
Sbjct: 119 GWHYVFKYPKGRSIPNKTKFASGLDTRSTGGLIVVAPSIHV-SGNQYQWLEGHSPFDRTP 177
Query: 160 EDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGE 219
+ P + L + + + P + I K + N+ + A
Sbjct: 178 AEAPAW----LLKLMERVEVLLTPF-EGSSIIAEIKEGSRNSTLTSLAGSMRA------- 225
Query: 220 EFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGD 279
T S +A ++ DE I
Sbjct: 226 -----------------RGMTEESIYAALLAENKARCNPPLDEAEVKK---------IAH 259
Query: 280 TAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKN 339
+ + + H A R D + + Y K W D
Sbjct: 260 SVSRYQPNPPMKKH--YHRTDSGNAERLRDRFGSII---------RYCPAFKYWLVYDG- 307
Query: 340 NVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEEN 399
W K T +M F + D+ + ED + R + E
Sbjct: 308 --CCWR----KETGELMQFAIKTARDMLAEASRIEDEAARKELVRHAMQS-------ENA 354
Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTP 459
+ K+ I D LDS L ++G++DL+TG+ + +E Y++K
Sbjct: 355 GRLKAMIDVASNLEGMVIMPDELDSDIWKLNCKNGVVDLKTGELLPHKREYYMSKICPVE 414
Query: 460 FVEGEPSQEFLDLVSGYFES-EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLM 518
+ + ++D ++ E++ Y + VG +L G Q + G G +GKST +
Sbjct: 415 YKPSSKAPRWMDFLNTITGGSNELVRYLQKAVGSSLSGDISEQALFVLYGTGANGKSTFL 474
Query: 519 NLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKI 578
N I G+ Y N + M R G + RL G+R+V E NE ++ A I
Sbjct: 475 NTISELLGD-YTRNTPSETFMAKRIEAIGN---DIARLQGARLVTAIEINEGQRLSEALI 530
Query: 579 KQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN 638
K TGGD +TAR YG + P FTPF+V N +R+ + WRR +IPF I
Sbjct: 531 KSFTGGDRITARFLYGEYFDFQP-QFTPFLVVNHRPVIRDTSHSIWRRIKLIPFTVTIPE 589
Query: 639 --RDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAW 696
+D KL + W ++G + +GL+ +P+ KA E R+ DT+ ++
Sbjct: 590 DKKDKQLPAKLREEL-PGILSWAVEGCLLWQKEGLN--MPDEVKKATEGYREEMDTFSSF 646
Query: 697 IDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKI 756
I++CC + E + S+ +Y + + +Y + + + ++GF
Sbjct: 647 IEECCIVEEGRKVSNRSIRYAYETWCRENGDY---PLGQKLFNAKMTERGFAVKRSGANG 703
Query: 757 EKEWKSKRIIKGLKLKPA 774
++W G+ L
Sbjct: 704 SRDW------HGIGLADE 715
>gi|281419521|ref|ZP_06250534.1| phage/plasmid primase, P4 family [Clostridium thermocellum JW20]
gi|281406812|gb|EFB37077.1| phage/plasmid primase, P4 family [Clostridium thermocellum JW20]
Length = 719
Score = 475 bits (1222), Expect = e-131, Method: Composition-based stats.
Identities = 158/800 (19%), Positives = 269/800 (33%), Gaps = 116/800 (14%)
Query: 4 MQWKEQAKQAIHNGFKLIPLR-----------------LGDKRPQRLGKWEEQLLSSEKI 46
+ + A + +IPL K P G ++ E+I
Sbjct: 3 VTMMDAALKYAEANIPVIPLHWICEDGSCSCKVGSNCDSKGKHPLYTGWYKNSTADVEQI 62
Query: 47 DKL----PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKI 102
K P G G L D+D ++T + + T L T G
Sbjct: 63 RKWWTKTPYANIGIPTGEKSGWLV-LDVDDGGDETISALEATHGKLPDTVTAVTGS---G 118
Query: 103 LIPFRMNKEGIKKKKTTESTQGHLDILGCGQ-YFVAYNIHPKTKKEYTW--TTPPHRFKV 159
+ + LD G VA +IH + Y W P +
Sbjct: 119 GRHYIFKYPEGRSIPNKTKFAPGLDTRSTGGLIVVAPSIHV-SGNRYEWIKDHSPFDRTL 177
Query: 160 EDTPLLSEEDVEYLFKFFQEITVPL--VKDKKSIIPSKTWTNNNNRQYTNREITAFLSCF 217
+ P E + L + + + P I + + T
Sbjct: 178 AEAP----EWLLKLMERVEVLLTPFEGSSIAAEIKEGSRNSTLTSLAGT----------- 222
Query: 218 GEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEI 277
M V T S +A ++ DE I
Sbjct: 223 ----------------MRVRGMTEESIYAALLAENNARCNPPLDEAEVKK---------I 257
Query: 278 GDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKD 337
+ + + H A R D + + Y K W D
Sbjct: 258 AHSVSRYQPNPPMKKH--YHRTDSGNAERLRDRFGSII---------RYCPAFKYWLVYD 306
Query: 338 KNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVE 397
W K T +M F + D+ + ED + R + E
Sbjct: 307 G---CCWR----KETGELMQFAIKTARDMLAEASRIEDEAMRKELVRHAMQS-------E 352
Query: 398 ENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTG 457
+ K+ I D LD+ L ++G+++L+TG+ + +E Y++K
Sbjct: 353 NAGRLKAMIDVASNLEGLVIMPDELDADIWKLNCKNGVVNLKTGELLPHKREYYMSKICP 412
Query: 458 TPFVEGEPSQEFLDLVSGYFES-EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKST 516
+ + ++D ++ +E++ Y + VG +L G Q + G G +GKST
Sbjct: 413 VEYKPSSKAPRWMDFLNTITGGSKELVRYLQKAVGSSLSGDISEQALFVLYGTGANGKST 472
Query: 517 LMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAA 576
+N I G+ Y N + M R G + RL G+R+V E NE ++ A
Sbjct: 473 FLNTISELLGD-YARNTPSETFMAKRIEAIGN---DIARLQGARLVTAIEINEGQRLSEA 528
Query: 577 KIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI 636
IK TGGD +TAR YG + P FTPF+V N +R+ + WRR +IPF I
Sbjct: 529 LIKSFTGGDRITARFLYGEYFDFQP-QFTPFLVVNHRPVIRDTSHSIWRRIKLIPFTVTI 587
Query: 637 AN--RDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQ 694
+D KL + W ++G + +GL ++P+ +A E R+ DT+
Sbjct: 588 PEDKKDKQLPAKLREEL-PGILSWAVEGCLLWQKEGL--EMPDEVKEATEGYREEMDTFS 644
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
++I++CC + E + S+ +Y + + +Y + + + ++GF
Sbjct: 645 SFIEECCIVEEGRKVSNRSIRYAYETWCRENGDY---PLGQKLFNAKMTERGFAVKRSGA 701
Query: 755 KIEKEWKSKRIIKGLKLKPA 774
++W G+ L
Sbjct: 702 NGSRDW------HGIGLADE 715
>gi|125974487|ref|YP_001038397.1| P4 family phage/plasmid primase [Clostridium thermocellum ATCC
27405]
gi|125714712|gb|ABN53204.1| phage / plasmid primase, P4 family [Clostridium thermocellum ATCC
27405]
Length = 717
Score = 474 bits (1219), Expect = e-131, Method: Composition-based stats.
Identities = 162/797 (20%), Positives = 271/797 (34%), Gaps = 110/797 (13%)
Query: 4 MQWKEQAKQAIHNGFKLIPLR-----------------LGDKRPQRLGKWEEQLLSSEKI 46
M + A + +IPL K P G ++ E+I
Sbjct: 1 MTMMDAALKYAEANIPVIPLHWICEDGSCSCKVGSNCDSKGKHPLYTGWYKNSTADIEQI 60
Query: 47 DKL----PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKI 102
K P G G L D+D +T + + T L T G
Sbjct: 61 KKWWTKTPNANIGIPTGEKSGWLV-LDVDDGGNETLSALEATHGKLPDTVTAVTGS---G 116
Query: 103 LIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTW--TTPPHRFKVE 160
+ + LD G VA + Y W P
Sbjct: 117 GRHYVFKYPQGRSIPNKTKFVPGLDTRSTGGLIVAAPSIHVSGNRYEWIKDHSPFDRTPA 176
Query: 161 DTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEE 220
+ P E+L K + V L + S I ++ + N T+ T
Sbjct: 177 EAP-------EWLLKLMEREEVLLTPFEGSSITAEIMEGSRNSTLTSLAGT--------- 220
Query: 221 FYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDT 280
M T +A ++ DE + +
Sbjct: 221 -------------MRARGMTEEGIYAALLAENNARCNPPLDEAEVRNIVHS-------VS 260
Query: 281 AKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNN 340
+ + YH A R D + + Y K W D
Sbjct: 261 RYQPNPPMKKHYHR----TDSGNAERLRDRFGSII---------RYCPAFKYWLVYDG-- 305
Query: 341 VYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENS 400
W K T +M F + D+ + + ED + + + +N
Sbjct: 306 -CCWR----KETGELMQFAIKTARDMLAEASQIEDEATRKE----LVHHAMQSENAGRLK 356
Query: 401 KAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPF 460
A +LE I D LDS L ++G++DL+TG+ + +E Y++K +
Sbjct: 357 AMIDVASNLE---GLIIMPDELDSDIWKLNCKNGVVDLKTGELLPHKREYYMSKICPVEY 413
Query: 461 VEGEPSQEFLDLVSGYFES-EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMN 519
+ +++ ++ E++ Y + VG +L G Q + G G +GKST +N
Sbjct: 414 SPESKAPRWIEFLNTITGGSNELVRYLQKAVGSSLSGDISEQALFVLYGTGANGKSTFLN 473
Query: 520 LIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIK 579
I G+ Y N + M R G + RL G+R+V E NE ++ A IK
Sbjct: 474 TISDLLGD-YARNTPSETFMAKRIEAIGN---DIARLQGARLVTAIEINEGQRLSEALIK 529
Query: 580 QMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN- 638
TGGD +TAR YG + P FTPF+V N +R+ + WRR +IPF I
Sbjct: 530 SFTGGDRITARFLYGEYFDFQP-QFTPFLVVNHRPVIRDTSHSIWRRIKLIPFTVTIPED 588
Query: 639 -RDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWI 697
+D KL + W ++G + +GL ++P+ +A E R+ DT+ ++I
Sbjct: 589 KKDKQLPAKLREEL-PGILSWAVEGCLLWQKEGL--EMPDEVKEATEGYREEMDTFSSFI 645
Query: 698 DDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIE 757
++CC + E + S+ +Y + + +Y + + + ++GF
Sbjct: 646 EECCIVEEGRKVSNRSIRYAYETWCRENGDY---PLGQKLFNAKMTERGFAVKRSGANGS 702
Query: 758 KEWKSKRIIKGLKLKPA 774
++W G+ L
Sbjct: 703 RDW------HGIGLADE 713
>gi|125975329|ref|YP_001039239.1| P4 family phage/plasmid primase [Clostridium thermocellum ATCC
27405]
gi|125715554|gb|ABN54046.1| phage / plasmid primase, P4 family [Clostridium thermocellum ATCC
27405]
Length = 717
Score = 471 bits (1212), Expect = e-130, Method: Composition-based stats.
Identities = 160/796 (20%), Positives = 273/796 (34%), Gaps = 108/796 (13%)
Query: 4 MQWKEQAKQAIHNGFKLIPLR-----------------LGDKRPQRLGKWEEQLLSSEKI 46
M + A + +IPL K P G ++ E+I
Sbjct: 1 MTMMDAALKYAEANIPVIPLHWICEDGSCSCKAGSDCDSKGKHPLYTGWYKNSTTDVEQI 60
Query: 47 DKL----PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKI 102
K P G G L D+D ++T + + T L T G
Sbjct: 61 KKWWTKTPNANIGIPTGEKSDWLV-LDVDDGGDETLSALEATHGKLPDTVTAVTGS---G 116
Query: 103 LIPFRMNKEGIKKKKTTESTQGHLDILGCGQYF-VAYNIHPKTKKEYTWTTPPHRFKVED 161
+ + LD+ G VA +IH + Y W E
Sbjct: 117 GRHYVFIYPKGRSIPNKTKFAPGLDMRSTGGLIAVAPSIH-ISGNRYEWLEG--HSPFER 173
Query: 162 TPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEF 221
P + + L + + + P + I K N+ +T+
Sbjct: 174 IPAEAPAWLLKLMERVEVLLTPF-EGSSIIAEIKEGNRNST-------LTSLAGTMRAR- 224
Query: 222 YNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTA 281
M T S +A ++ DE I +
Sbjct: 225 -----------GM-----TEESIYAALLAENNARCNPPLDEAEVRK---------IAHSV 259
Query: 282 KKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNV 341
+ + H A R D + + + Y K W D
Sbjct: 260 SRYQPNPPMKKH--YHRTDSGNAERLRDRFGEII---------RYCPAFKYWLVYDG--- 305
Query: 342 YIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSK 401
W K T +M F + D+ + ED + R + E +
Sbjct: 306 CCWR----KETGELMQFAIKTARDMLAEASRIEDEAARKELVRHAMQS-------ENAGR 354
Query: 402 AKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFV 461
K+ I D +DS L ++G++DL+TG+ + +E Y++K +
Sbjct: 355 LKAMIDVASNLEGMVIMPDEIDSDIWKLNCRNGVVDLKTGELLPHKREYYMSKICPVEYK 414
Query: 462 EGEPSQEFLDLVSGYFES-EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNL 520
+ ++++ ++ +E++ Y + VG +L G Q + G G +GKST +N
Sbjct: 415 PSSKAPKWMEFLNTITGGSKELVRYLQKAVGSSLSGDISEQALFVLYGTGANGKSTFLNT 474
Query: 521 IKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQ 580
I G+ Y N + M R G + RL G+R+V E NE ++ A IK
Sbjct: 475 ISDLLGD-YARNTPSETFMAKRIEAIGN---DIARLQGARLVTAIEINEGQRLSEALIKS 530
Query: 581 MTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN-- 638
TGGD +TAR YG + P FTPF+V N +R+ + WRR +IPF I
Sbjct: 531 FTGGDRITARFLYGEYFDFQP-QFTPFLVVNHRPVIRDTSHSIWRRIKLIPFTVTIPEDK 589
Query: 639 RDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID 698
+D KL + W ++G + +GL+ +P+ KA E R+ DT+ ++I+
Sbjct: 590 KDKQLPAKLREEL-PGILSWAVEGCLLWQKEGLN--MPDEVKKATEGYREEMDTFSSFIE 646
Query: 699 DCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEK 758
+CC + E + S+ +Y + + +Y + + + ++GF +
Sbjct: 647 ECCIVEEGRKVSNRSIRYAYETWCRENGDY---PLGQKLFNAKMTERGFAVKRSGANGSR 703
Query: 759 EWKSKRIIKGLKLKPA 774
+W G+ L
Sbjct: 704 DW------HGIGLADE 713
>gi|125975346|ref|YP_001039256.1| P4 family phage/plasmid primase [Clostridium thermocellum ATCC
27405]
gi|125715571|gb|ABN54063.1| phage / plasmid primase, P4 family [Clostridium thermocellum ATCC
27405]
Length = 717
Score = 470 bits (1210), Expect = e-130, Method: Composition-based stats.
Identities = 158/798 (19%), Positives = 270/798 (33%), Gaps = 112/798 (14%)
Query: 4 MQWKEQAKQAIHNGFKLIPLR-----------------LGDKRPQRLGKWEEQLLSSEKI 46
M + A + ++PL K P G ++ E+I
Sbjct: 1 MTMMDAAIKYAEANIPVMPLHWICEDGSCSCKAGSDCDSKGKHPLYTGWYKNSTADMEQI 60
Query: 47 DKL----PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKI 102
K P G G L D+D ++T + + T+ L T G
Sbjct: 61 RKWWTKTPNANIGIPTGEKSDWLV-LDVDDGGDETISALEATYGKLPDTVTAVTGS---G 116
Query: 103 LIPFRMNKEGIKKKKTTESTQGHLDILGCGQ-YFVAYNIHPKTKKEYTWTT--PPHRFKV 159
+ + LD G VA +IH + +Y W P
Sbjct: 117 GWHYVFKYPKGRSIPNKTKFASGLDTRSTGGLIVVAPSIHV-SGNQYQWLEGHSPFDRTP 175
Query: 160 EDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGE 219
+ P + L + + + P + I K + N+ + A
Sbjct: 176 AEAPAW----LLKLMERVEVLLTPF-EGSSIIAEIKEGSRNSTLTSLAGSMRA------- 223
Query: 220 EFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGD 279
T S +A ++ DE I
Sbjct: 224 -----------------RGMTEESIYAALLAENKARCNPPLDEAEVKK---------IAH 257
Query: 280 TAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKN 339
+ + + H A R D + + Y K W D
Sbjct: 258 SVSRYQPNPPMKKH--YHRTDSGNAERLRDRFGSII---------RYCPAFKYWLVYDG- 305
Query: 340 NVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEEN 399
W K T +M F + D+ + ED + R + E
Sbjct: 306 --CCWR----KETGELMQFAIKTARDMLAEASRIEDEAARKELVRHAMQS-------ENA 352
Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTP 459
+ K+ I D LDS L ++G++DL+TG+ + +E Y++K
Sbjct: 353 GRLKAMIDVASNLEGMVIMPDELDSDIWKLNCKNGVVDLKTGELLSHKREYYMSKICPVE 412
Query: 460 FVEGEPSQEFLDLVSGYFES-EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLM 518
+ + ++D ++ E++ Y + VG +L G Q + G G +GKST +
Sbjct: 413 YKPSSKAPRWMDFLNTITGGSNELVRYLQKAVGSSLSGDISEQALFVLYGTGANGKSTFL 472
Query: 519 NLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKI 578
N + G+ Y N + M R G + RL G+R+V E NE ++ A I
Sbjct: 473 NTVSDLLGD-YARNTPSETFMAKRIEAIGN---DIARLQGARLVTAIEINEGQRLSEALI 528
Query: 579 KQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN 638
K TGGD +TAR YG + P FTPF+V N +R+ + WRR +IPF I
Sbjct: 529 KSFTGGDRITARFLYGEYFDFQP-QFTPFLVVNHRPVIRDTSHSIWRRIKLIPFTVTIPE 587
Query: 639 --RDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAW 696
+D KL + W ++G + +GL+ +P+ +A + RQ DT+ ++
Sbjct: 588 DKKDKQLPAKLREEL-PGILSWAVEGCLIWQKEGLN--MPDEVKEATDGYRQEMDTFSSF 644
Query: 697 IDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKI 756
I++CC + E + S+ +Y + + +Y + + + ++GF
Sbjct: 645 IEECCIVEEGRKVSNRSIRYAYETWCRENGDY---PLGQKLFNAKMTERGFAVKRSGANG 701
Query: 757 EKEWKSKRIIKGLKLKPA 774
++W G+ L
Sbjct: 702 SRDW------HGIGLAEE 713
>gi|295402704|ref|ZP_06812647.1| phage/plasmid primase, P4 family [Geobacillus thermoglucosidasius
C56-YS93]
gi|294975276|gb|EFG50911.1| phage/plasmid primase, P4 family [Geobacillus thermoglucosidasius
C56-YS93]
Length = 832
Score = 469 bits (1208), Expect = e-130, Method: Composition-based stats.
Identities = 123/651 (18%), Positives = 229/651 (35%), Gaps = 70/651 (10%)
Query: 157 FKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPS-KTWTNNNNRQYTNREIT---- 211
K + P+ + + E+ + + +KS+ P +W + + +
Sbjct: 193 LKSDPKPVRTLKINPECRYSLLELRDAIEEMEKSLSPEDTSWEQRDYGETHLPDAQVEPI 252
Query: 212 ----AFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNY 267
F+ + + + +++EW MA ++I WSK Y E +
Sbjct: 253 LKGCRFIQDYLQHKESTTYNEW----MAALSIGAYCENYEQICHDWSKGHPDYSEAETDR 308
Query: 268 KW----DTFDFEEIGDTAKKRSTFTSLFY----------HHGKLIPKGLLASRF--SDAY 311
K + T Y K G F +D
Sbjct: 309 KIVEIRSKMKPRTCRSIHDEFGTCNGCPYFGKINSPISLGMKKEHRTGTKKPSFMRTDLG 368
Query: 312 NKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSE 371
N + Y +W+ D W + I +++ ++
Sbjct: 369 NAERLVYRHGDNIRYCNVFGSWFIWDGQR---WK---EDKINQIQELAAETIRNIYKEAQ 422
Query: 372 EPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGE 431
E D++ + S+ K A A S + + LD
Sbjct: 423 EERDSDIR---------KTLTEHALRSESRGKIEAMISLAKSKVPVMPEELDQDIWLFNC 473
Query: 432 QDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESE------EVMDY 485
+GI+DL TG+ + ++ +TK + + ++ + E E++++
Sbjct: 474 ANGIIDLRTGELLPHDRKKLMTKISPVIYDPKAECPTWIKFLEDIMSDEKGNPKYELIEF 533
Query: 486 FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545
+ VG +L G Q + G G +GKST +N I+ G+ Y A R
Sbjct: 534 LQKAVGYSLTGDTSEQVLFFLYGTGRNGKSTFVNTIREILGD-YGKQTNADTFTVKR--- 589
Query: 546 AGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFT 605
+ + N + L G+R V +E+ E + + +KQ+TGG+ + AR Y + P F
Sbjct: 590 SDRVNNDIAALKGARFVSATESEEGARLAESLVKQLTGGEAIQARFLYQENFEYIP-QFK 648
Query: 606 PFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDASFAQKLETKYTLEAKKWFLKGV 663
F N ++ D+ WRR +IPF I +D +KL+ + +W ++G
Sbjct: 649 IFFTTNHKPVIKGSDEGIWRRIRLIPFTVTIPEEKKDTRLPEKLKAE-MPGILRWAVEGC 707
Query: 664 KAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYRE 723
+ +GL P+ +A E + D+ A+I DCC + E L +Y ++ +
Sbjct: 708 LKWQREGLG--NPDEIKQATEGYKAEMDSLGAFIADCCVVNELAKCWGSDLYTAYQKWCD 765
Query: 724 QELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPA 774
+ Y I R L+++GF K ++ G+ LK
Sbjct: 766 ENGEY---EIGKRKFNKRLEERGF-------KKKRGTGGAIEFLGIGLKTE 806
>gi|281419011|ref|ZP_06250029.1| phage/plasmid primase, P4 family [Clostridium thermocellum JW20]
gi|281407468|gb|EFB37728.1| phage/plasmid primase, P4 family [Clostridium thermocellum JW20]
Length = 719
Score = 468 bits (1204), Expect = e-129, Method: Composition-based stats.
Identities = 160/797 (20%), Positives = 270/797 (33%), Gaps = 110/797 (13%)
Query: 4 MQWKEQAKQAIHNGFKLIPLR-----------------LGDKRPQRLGKWEEQLLSSEKI 46
+ + A + +IPL K P G ++ E+I
Sbjct: 3 VTMMDAALKYAEANIPVIPLHWICEDGSCSCKVGSNCDSKGKHPLYTGWYKNSTADIEQI 62
Query: 47 DKL----PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKI 102
K P G G L D+D +T + + T L T G
Sbjct: 63 KKWWTKTPNANIGIPTGEKSGWLV-LDVDDGGNETLSALEATHGKLPDTVTAVTGS---G 118
Query: 103 LIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTT--PPHRFKVE 160
+ + LD G VA + Y W P
Sbjct: 119 GRHYVFKYPQGRSIPNKTKFVPGLDTRSTGGLIVAAPSIHVSGNRYEWIKAHSPFDRTPA 178
Query: 161 DTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEE 220
+ P E+L K + V L + S I ++ + N T+ T
Sbjct: 179 EAP-------EWLLKLMEREEVLLTPFEGSSITAEIMEGSRNSTLTSLAGT--------- 222
Query: 221 FYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDT 280
M T +A ++ DE + +
Sbjct: 223 -------------MRARGMTEEGIYAALLAENNARCNPPLDEAEVRNIVHS-------VS 262
Query: 281 AKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNN 340
+ + YH A R D + + Y K W D
Sbjct: 263 RYQPNPPMKKHYHR----TDSGNAERLRDRFGSII---------RYCPAFKYWLVYDG-- 307
Query: 341 VYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENS 400
W K T +M F + D+ + + ED + + + +N
Sbjct: 308 -CCWR----KETGELMQFAIKTARDMLAEASQIEDEATRKE----LVHHAMQSENAGRLK 358
Query: 401 KAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPF 460
A +LE I D LDS L ++G++DL+TG+ + +E Y++K +
Sbjct: 359 AMIDVASNLE---GLIIMPDELDSDIWKLNCKNGVVDLKTGELLPHKREYYMSKICPVEY 415
Query: 461 VEGEPSQEFLDLVSGYFES-EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMN 519
+ +++ ++ E++ Y + VG +L G Q + G G +GKST +N
Sbjct: 416 SPESKAPRWIEFLNTITGGSNELVRYLQKAVGSSLSGDISEQALFVLYGTGANGKSTFLN 475
Query: 520 LIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIK 579
I G+ Y N + M R G + RL G+R+V E NE ++ A IK
Sbjct: 476 TISDLLGD-YARNTPSETFMAKRIEAIGN---DIARLQGARLVTAIEINEGQRLSEALIK 531
Query: 580 QMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN- 638
TGGD +TAR YG + P FTPF+V N +R+ + WR +IPF I
Sbjct: 532 SFTGGDRITARFLYGEYFDFQP-QFTPFLVVNHRPVIRDTSHSIWRHIKLIPFTVTIPED 590
Query: 639 -RDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWI 697
+D KL + W ++G + +GL ++P+ +A E R+ DT+ ++I
Sbjct: 591 KKDKQLPAKLREEL-PGILSWAVEGCFLWQKEGL--EMPDEVKEATEGYREEMDTFSSFI 647
Query: 698 DDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIE 757
++CC + E + S+ +Y + + +Y + + + ++GF
Sbjct: 648 EECCIVEEGRKVSNRSIRYAYETWCRENGDY---PLGQKLFNAKMTERGFAVKRSGANGS 704
Query: 758 KEWKSKRIIKGLKLKPA 774
++W G+ L
Sbjct: 705 RDW------HGIGLADE 715
>gi|237653460|ref|YP_002889774.1| P4 family phage/plasmid primase [Thauera sp. MZ1T]
gi|237624707|gb|ACR01397.1| phage/plasmid primase, P4 family [Thauera sp. MZ1T]
Length = 782
Score = 462 bits (1189), Expect = e-128, Method: Composition-based stats.
Identities = 139/686 (20%), Positives = 259/686 (37%), Gaps = 71/686 (10%)
Query: 118 TTESTQGHLDILGCGQYFVAYNIHPKTK---KEYTWTTPPHRFKVE------DTPLLSEE 168
+ + L+ G +F P TK + Y + + P + L +
Sbjct: 128 PVKDWRAFLE--GAKAHFGTDIFDPATKDAARLYYFPSCPPEMAEHRRSMRLEGAFLDPQ 185
Query: 169 DVEYLFKFFQEITVPLVKDK--KSIIPSKTWTNNNN------RQYTNREITAFLSCFGEE 220
+ + P S+ S W+ + + + + +
Sbjct: 186 PFIERGREILAPSTPTGAPAHLASVAISNEWSTGRSALPEPETRENVERLRSAAAAIPSS 245
Query: 221 FYNG-SHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGS-TYDEENFNYKWDTFDFEEIG 278
G + D ++ V+ G + +E+AR W +DE++F W ++D +
Sbjct: 246 KAKGCTRDIYLTVLWGF--AATGWNCAEELAREWCMTSPEDFDEDDFGKDWRSYDAQR-- 301
Query: 279 DTAKKRSTFTSLFYHHGKLIPKGL----------LASRFSDAYNKAMFSIYKKGHFLYTA 328
+ L +G + P+ + +A +D N F Y
Sbjct: 302 TERIGMGSVFKLAEQNGWVDPRHVVNSTKQPTPDIAQTLNDTSNAERFVRACGERLRYVV 361
Query: 329 DTKAWYKKDKNNVYIWSLT-LDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWF 387
+ + W + + W +I M D +L+ + N W
Sbjct: 362 ELRIWLVWHEGH---WRYDRKGQIVELAKRVATRMFSDAGELATAADRNALFK-----WA 413
Query: 388 NTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPT 447
N + +E A A + +++ LD+ LG ++G+++L TG +
Sbjct: 414 NASLQLPRLE--------AMVKLAQAPLAVSVSELDADPWLLGVKNGVVELRTGTFRQSR 465
Query: 448 KELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHI 506
E ITK +V G + ++ G + ++ D+ R G L G Q F
Sbjct: 466 PEDLITKIANVEYVAGATCPTWEAMLDGCMGGNRQLADFIQRAAGYTLTGSTSEQVFFFA 525
Query: 507 RGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISE 566
GVG +GKST++N ++ G + ++ IM R P L RL G R+V + E
Sbjct: 526 YGVGANGKSTVINALREIMGGH-GLQSQPEVIMAQRNTNPSGPTPELARLAGVRMVAMVE 584
Query: 567 TNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRR 626
T + ++ +++KQM+GGD MTAR+ +G + P F ++ N +R D WRR
Sbjct: 585 TEDGQRLHESRVKQMSGGDAMTARVLHGEPFDFVP-KFKLWLAGNHRPVIRGDDHGIWRR 643
Query: 627 YIVIPF--DKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKE 684
++IPF P RD A+KL +Y W ++G + GLD+ P ++ +
Sbjct: 644 IVLIPFLVTIPPEKRDRMLAEKLRDEY-PGVLNWLIRGCLEWQRVGLDL--PSDVVREVD 700
Query: 685 EERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQ 744
+ + D W+D+ C +G + + S + YS + + + + I+ L +
Sbjct: 701 QYKSDMDLIAQWLDEQCSVGPAMRCRARSAYQDYSTWAKDGGH---QVITEVRFAQKLDE 757
Query: 745 KGFIGGIKREKIEKEWKSKRIIKGLK 770
+GF +++ + I GL
Sbjct: 758 RGFT--------KRKERQGMIYLGLT 775
>gi|189426164|ref|YP_001953341.1| P4 family phage/plasmid primase [Geobacter lovleyi SZ]
gi|189422423|gb|ACD96821.1| phage/plasmid primase, P4 family [Geobacter lovleyi SZ]
Length = 695
Score = 449 bits (1154), Expect = e-123, Method: Composition-based stats.
Identities = 130/578 (22%), Positives = 221/578 (38%), Gaps = 55/578 (9%)
Query: 206 TNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENF 265
T +I S +G +EWI V M +HHE GS +G + WS+ + + +E
Sbjct: 155 TPADIANLKSALPAISPDG-REEWICVGMGLHHEFAGSEEGLALWEEWSRGSTKFKDEEC 213
Query: 266 NYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASR---------FSDAYNKAMF 316
KW GD + T ++ YH K L A R +D + F
Sbjct: 214 PEKW-----AGFGDRVDQPVTAGTI-YHMAKA-AGWLPAERVSEEAALKLLTDMRVSSYF 266
Query: 317 SIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDN 376
+ K + + W D W+ FL + ++ + + E++
Sbjct: 267 AAKFKDRLRFNP-SLDWLVFDGQR---WN---SNTPGGAYPFLKELIAEIRAKASQIEND 319
Query: 377 NKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGIL 436
+ + +E +++ + + FS++S LD L +G L
Sbjct: 320 AERMSMLKESVK-------LEAHNRQAMVISAAQKIPDFSVSSCQLDRDPMLLNVLNGTL 372
Query: 437 DLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALL 495
DL TG + + +IT+ + + F +S + + + R G L
Sbjct: 373 DLRTGSLKQHSPADFITRLVPIEYNHTATAPVFEAFLSKIMAGNTALTAFIKRWAGYCLT 432
Query: 496 GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIR 555
G Q + + G G +GKST +N++K G+ A D++ ++ +L
Sbjct: 433 GDTSEQVLLFLYGTGRNGKSTFVNILKKLLGDFAATGA--GDLILHKGNGDLSTLSALAA 490
Query: 556 LMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLF 615
+ G+R+V ++E N+ D +N A +K +TGGD + R + + PA F + N
Sbjct: 491 MRGARLVNLNELNDGDRLNEAAVKNLTGGDLLACRFLHKEFFEYKPA-FKLLLFGNHKPS 549
Query: 616 VRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDV 673
+R D WRR ++ F I A D QKLE K W ++G + + L
Sbjct: 550 IRGTDHGIWRRLHLLKFGVTISDAECDPHLEQKLE-KELPGILAWAVQGCLEWQREKLSP 608
Query: 674 DIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRI 733
P +A E R D + W+DDCC + + L S+ +Y K +
Sbjct: 609 --PAEVKEAVAEYRNSEDALKGWLDDCCQLAPQFRTPAGLLLNSFIQYSNW------KGL 660
Query: 734 STRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771
S R + L GF G + + +GL L
Sbjct: 661 SARRFSSMLTVAGFTKG---------RSNGVVWEGLAL 689
>gi|196037390|ref|ZP_03104701.1| gp60 [Bacillus cereus NVH0597-99]
gi|196031632|gb|EDX70228.1| gp60 [Bacillus cereus NVH0597-99]
Length = 795
Score = 447 bits (1150), Expect = e-123, Method: Composition-based stats.
Identities = 153/797 (19%), Positives = 283/797 (35%), Gaps = 97/797 (12%)
Query: 36 WEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDID--SKDEKTANTFKDTFE-ILHGTP 92
W + ++ G GF+ + P DID ++ + +D E + T
Sbjct: 50 WSTFPTIMKFYEQGDYDGIGFMF-SKDDPFIGIDIDHCIQEGALTSLAEDVIETVNSYTE 108
Query: 93 IVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTT 152
G I I + ++ L++ G+YF
Sbjct: 109 YSPSGDG--IHIIAKGKLPLKGPGTGRKNVDLGLEVYRHGRYFTFTGD--------CLDQ 158
Query: 153 PPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITA 212
P + ++ +L E+ ++ K ++ + ++ I S + R + ++ +
Sbjct: 159 VPVEDRTDELKVLFEKYLKEKPKPEKKQS--TTSFEREDITSLSNAELWERMFDSKSGAS 216
Query: 213 FLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENF-NYKWD- 270
F NG H MA+ + + + +K S + E + KWD
Sbjct: 217 IKDLFQGMLINGDHSS---TDMALCNHLAFWTD-----KDAAKMDSMFRESSLLREKWDK 268
Query: 271 --TFDFEEIG------------DTAKKRSTFTSLFYH---------HGKLIPKGLLASRF 307
+ D G T Y + I
Sbjct: 269 PHSSDGRTYGQMTIDTAILSTPSTIADYEPPEEKKYEVYISDNSIEDTEEIIDEAPKFHL 328
Query: 308 SDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVF 367
++ N + Y + Y + + W N W + +I +
Sbjct: 329 TELGNAERIAYYHGENVRYCNELE-WLIW---NGKHWHEDSKRQIEAITAKTLRAI---- 380
Query: 368 DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSR 427
E +K + R+++ NS L+ + S+ LD+ +
Sbjct: 381 -YGEAKATEDKYQSKLLHDWAKKCERRSIRINS-------ILDVRPMVSVKKKELDAHNF 432
Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF------ESEE 481
+G++DL+TG+ + ++L +TK + + + + + F E
Sbjct: 433 LFNCDNGVIDLKTGELLPHDRDLLLTKLSPIKYDKNADCPNWKAFMESIFKTPAGEPDPE 492
Query: 482 VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQN 541
+++Y + +G +L G K Q + G G +GKST +N+I+ G+ Y + ++
Sbjct: 493 LINYLQKAIGYSLTGVTKEQVMFFLFGNGRNGKSTFINIIQDLLGD-YGRQTNSDTFLKK 551
Query: 542 RPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESP 601
R N + RL G+R V E+ E +++ A +KQ+TGG+ M+AR + +P
Sbjct: 552 RNDSG--INNDVARLDGARFVSAVESEEGQQLSEALVKQITGGEKMSARFLRQEYFEFTP 609
Query: 602 ASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAKKWF 659
F F N V+ D+ WRR ++IPF I D KL K +W
Sbjct: 610 -EFKVFFTTNHKPIVKGSDEGIWRRIMLIPFTVTIPKDKIDYDLPDKL-AKEMPGVLRWA 667
Query: 660 LKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYS 719
++G + ++GL PE A E R+ D +ID+ C + E+ L ++Y+
Sbjct: 668 VEGCMKWQAEGLR--APEAVKAATAEYREDMDILAPFIDENCTVHPTERIEAKLLYENYT 725
Query: 720 EYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP------ 773
++ Q D + R L+ +GF K EK K+K I G+ L
Sbjct: 726 KWCYQNNELD---LKNRAFYRQLEIRGF-------KKEKGSKNKTFIMGMTLNSHASASL 775
Query: 774 -AFESVDDNSNIIDFKR 789
+ + + SNI R
Sbjct: 776 FSTDDKKEESNITPMNR 792
>gi|229016445|ref|ZP_04173387.1| hypothetical protein bcere0030_10200 [Bacillus cereus AH1273]
gi|228744853|gb|EEL94913.1| hypothetical protein bcere0030_10200 [Bacillus cereus AH1273]
Length = 795
Score = 442 bits (1137), Expect = e-121, Method: Composition-based stats.
Identities = 157/797 (19%), Positives = 284/797 (35%), Gaps = 97/797 (12%)
Query: 36 WEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDID--SKDEKTANTFKDTFE-ILHGTP 92
W + ++ G GF+ + P DID ++ + +D E + T
Sbjct: 50 WSTFPTIIKFYEQGDYDGIGFMF-SKDDPFIGIDIDHCIQEGALTSIAEDVIETVNSYTE 108
Query: 93 IVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTT 152
G I I + ++ L++ G+YF
Sbjct: 109 YSPSGDG--IHIIAKGKLPLKGPGTGRKNVDIGLEVYRHGRYFTFTGD--------CLDQ 158
Query: 153 PPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITA 212
P + ++ +L E+ ++ K ++ + ++ I S + R + ++ A
Sbjct: 159 VPVEDRTDELKVLFEKYLKEKPKPEKKQS--TTSFEREDITSLSNAELWERMFDSKSGAA 216
Query: 213 FLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENF-NYKWD- 270
F NG H MA+ + + + +K S + E + KWD
Sbjct: 217 IKDLFQGMLINGDHSS---TDMALCNHLAFWTD-----KDSAKMDSMFRESSLLREKWDK 268
Query: 271 --TFDFEEIG------------DTAKKRSTFTSLFYH---------HGKLIPKGLLASRF 307
+ D G T Y + I
Sbjct: 269 PHSSDGRTYGEMTIDTAILSTPSTIADYEPPEEKKYEVYISDNSIEDTEEIIDEAPKFHL 328
Query: 308 SDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVF 367
++ N + Y + Y + + W N W + +I +
Sbjct: 329 TELGNAERIAYYHGDNVRYCNELE-WLIW---NGKHWHEDSKRQIEAITAKTLRAI---- 380
Query: 368 DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSR 427
E +K + R+++ NS L+ + S+ LDS S
Sbjct: 381 -YGEAKATEDKYQSKLLHDWAKKCERRSIRINS-------ILDVKPMVSVRKKELDSHSF 432
Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF------ESEE 481
+G++DL+TG+ + ++L +TK + + + + + F E
Sbjct: 433 LFNCDNGVIDLKTGELLPHDRDLLLTKLSPIKYDKNAECPNWKSFMESIFKTPAGEPDHE 492
Query: 482 VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQN 541
+++Y + +G +L G K Q + G G +GKST +N+I+ G+ Y + ++
Sbjct: 493 LINYLQKAIGYSLTGVTKEQVMFFLFGNGRNGKSTFINIIQDLLGD-YGRQTNSDTFLKK 551
Query: 542 RPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESP 601
R N + RL G+R V E+ E +++ A +KQ+TGG+ M+AR + +P
Sbjct: 552 RNDSG--INNDVARLDGARFVSAVESEEGQQLSEALVKQITGGEKMSARFLRQEYFEFTP 609
Query: 602 ASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAKKWF 659
F F N V+ D+ WRR ++IPF I D KL K +W
Sbjct: 610 -EFKVFFTTNHKPIVKGSDEGIWRRIMLIPFTVTIPKDKIDYDLPDKL-AKEMPGVLRWA 667
Query: 660 LKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYS 719
++G + ++GL PE A E R+ D +ID+ C + E+ L ++Y+
Sbjct: 668 VEGCMKWQTEGLR--APEAVKAATAEYREDMDILGPFIDENCAVYSTARVEAKLLYENYT 725
Query: 720 EYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP------ 773
++ Q D + R L+ +GF K EK K+K I G+ L
Sbjct: 726 KWCYQNNEMD---LKNRAFYRQLEIRGF-------KKEKGSKNKTFIHGMTLNEFAGASL 775
Query: 774 -AFESVDDNSNIIDFKR 789
+ E ++ NI KR
Sbjct: 776 FSGEEKEEKDNITPIKR 792
>gi|52081928|ref|YP_080719.1| phage-like protein [Bacillus licheniformis ATCC 14580]
gi|52787314|ref|YP_093143.1| hypothetical protein BLi03629 [Bacillus licheniformis ATCC 14580]
gi|52005139|gb|AAU25081.1| hypothetical phagelike protein [Bacillus licheniformis ATCC 14580]
gi|52349816|gb|AAU42450.1| putative protein [Bacillus licheniformis ATCC 14580]
Length = 805
Score = 441 bits (1134), Expect = e-121, Method: Composition-based stats.
Identities = 146/782 (18%), Positives = 277/782 (35%), Gaps = 102/782 (13%)
Query: 34 GKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDID--SKDEKTANTFKDTFE-ILHG 90
W + + G GF+ + P DID +D + ++ + I
Sbjct: 47 RTWSTFPTVLKFYNDRDYDGIGFMF-SKDDPFIGIDIDHCVEDGVLSPFAEEIVQAISSY 105
Query: 91 TPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTW 150
T G+ + I + ++ + L++ G+YF
Sbjct: 106 TEYSPSGKG--VHIITKGKIPLRGPGTGRKNPELGLEVYRHGRYFTFTGNSLGIG----- 158
Query: 151 TTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKS-IIPSKTWTNNNNRQYTNRE 209
VE+ ++++ LF+ + + K K S+ +N +N++ R
Sbjct: 159 -------AVEE----RTDELKELFEKYLKDKKEESKPSKLPAASSRDMSNLSNKEIWERM 207
Query: 210 ITAFLSCFGEEFYNGS--HDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEEN-FN 266
+ ++ +NG +D+ MA+ + + + +K S + E F
Sbjct: 208 FNSKNGKSIQDLFNGHLINDDHSATDMALCNHLAFWTD-----KDPAKMDSMFRESGLFR 262
Query: 267 YKWDTFDFEEIGDTAKKRSTFTSLFYHHG-----------------------------KL 297
KWD + G T + + +++ H +
Sbjct: 263 EKWDRQHSSD-GATYGEMTIAAAVYSTHTTISDLLEEQQEQPYEIYISHPENSQVEDTEE 321
Query: 298 IPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMN 357
I A ++ N Y + Y + W N W + +I
Sbjct: 322 IIDTPPAFHLTELGNAERIVYYHGKNIRYCNEL-DWLIW---NGKRWEEDSKRKIEAI-- 375
Query: 358 FLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSI 417
+ K E +K K + R+N+ N L+ + S+
Sbjct: 376 ---TAKTLRALYGEAKATEDKFRKKQLNDWAKKCERRNIRMN-------TILDVRPMVSV 425
Query: 418 TSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF 477
LDS +G++DL+TG+ + ++L TK + + + + F
Sbjct: 426 RKQELDSHKYLFNCDNGVIDLKTGELLPHDRDLLFTKISPISYQTDADCPNWKTFLESIF 485
Query: 478 ESE------EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVI 531
+ E++D+ + +G +L G Q + G G +GKST +N +++ FG+ Y
Sbjct: 486 IDDQGTPNYEIIDFMQKAIGYSLTGDTTEQVMFFLFGNGRNGKSTFINTVQHLFGD-YGR 544
Query: 532 NAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARL 591
+ ++ + A N + RL G+R V E+ E +++ + +KQ+TGG+ M+AR
Sbjct: 545 QTNSDTFIKKKNDSA--INNDIARLDGARFVSAVESEEGQQLSESLVKQITGGEKMSARF 602
Query: 592 NYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLET 649
+ +P F F N V+ D+ WRR +IPF I D QKL
Sbjct: 603 LRQEYFEFTP-EFKVFFTTNHKPIVKGSDEGIWRRIRLIPFTVTIPKEKVDKKLPQKLAA 661
Query: 650 KYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWE 709
+ +W ++G + +GL PE KA + R+ D ++++ C
Sbjct: 662 E-MPGILRWAVEGCLKWQKEGLG--EPEAIKKATDGYREDMDILGPFMEERCIQHPKAKV 718
Query: 710 ESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGL 769
E+ L K Y ++ D + R L+ +GF K + +K G+
Sbjct: 719 EAKELYKDYKDWC---FENDEIELKNRAFYRQLEIRGF-------KKYRGNYNKNYFDGI 768
Query: 770 KL 771
L
Sbjct: 769 GL 770
>gi|291484307|dbj|BAI85382.1| hypothetical protein BSNT_02817 [Bacillus subtilis subsp. natto
BEST195]
Length = 805
Score = 441 bits (1134), Expect = e-121, Method: Composition-based stats.
Identities = 134/748 (17%), Positives = 260/748 (34%), Gaps = 70/748 (9%)
Query: 51 ACGFGFVCGVGEQPLYAFDID--SKDEKTANTFKDTFE-ILHGTPIVRIGQKPKILIPFR 107
G GF+ + P DID D + ++ + I T G+ I+ +
Sbjct: 64 YDGIGFMF-SKDDPFIGIDIDHCVNDGVLSPFAQEIIQTISSYTEYSPSGEGVHIIAKGK 122
Query: 108 MNKEGIKKKKTTESTQGHLDILGCGQYFVA-------YNIHPKTKKEYTWTTPPHRFKVE 160
+ ++ L++ G+YF + ++++ T K E
Sbjct: 123 L--PLRGPGTGRKNIDKGLEVYRHGRYFTFTGNSLDVGPVQERSEEIKTIFDKYLTEKEE 180
Query: 161 DTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEE 220
P+ + + S N + T C
Sbjct: 181 AKPVSTRTQSASDISNLSNKEIWERMFNSKNGKSIQELFNGQLINGDHSSTDMALCNHLA 240
Query: 221 FYNGSHDEWIPVVMAVHHETRGSSKGKEIARR-WSKQGSTYDEENFNYKWDTFDFEEIGD 279
F+ + R S +E + S G+TY E + I D
Sbjct: 241 FWTD------KDASKMDSMFRESGLFREKWDQQHSADGATYGEMTIAAAIYSTGPT-ISD 293
Query: 280 TAKKRSTFTSLFYH--------HGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTK 331
+++ +++ + I ++ N Y + Y +
Sbjct: 294 LMEQQEQPYEVYFSQPQASHVADTEEIIDTPPVFHLTELGNAERLVYYHGKNIRYCNEL- 352
Query: 332 AWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDY 391
W N +W + I ++ ++ ED + + +
Sbjct: 353 DWLIW---NGKMWEEDSKR---QIEALTAQTLRAIYGEAKATEDGYRKKQLND--WAKKC 404
Query: 392 RRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELY 451
R+N+ N L+ + ++ LDS ++G++DL+TG+ + ++
Sbjct: 405 ERRNIRMN-------TILDTRPMVAVRKQDLDSHKYLFNCENGVIDLKTGELLPHDRDFL 457
Query: 452 ITKSTGTPFVEGEPSQEFLDLVSGYFESE------EVMDYFTRCVGMALLGGNKAQRFIH 505
TK + + + + + F E E++++ + +G +L G Q
Sbjct: 458 FTKISSVAYQKDADCPNWKAFLESIFIDEQGQPNYEIINFMQKAIGYSLTGDTTEQVMFF 517
Query: 506 IRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIIS 565
+ G G +GKST +N ++ G+ Y + ++ + + N + RL G+R V
Sbjct: 518 LFGNGRNGKSTFINTVQQLLGD-YGRQTNSDTFIKKKNDSS--INNDIARLDGARFVSAV 574
Query: 566 ETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625
E+ E +++ + +KQ+TGG+ M+AR + +P F F N V+ D+ WR
Sbjct: 575 ESEEGQQLSESLVKQITGGEKMSARFLRQEYFEFTP-EFKVFFTTNHKPIVKGSDEGIWR 633
Query: 626 RYIVIPFDKPIANR--DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAK 683
R ++PF I D QKL + +W ++G + +GL PEV KA
Sbjct: 634 RIRLVPFTVTIPKEKVDKKLPQKLAAE-MPGILRWAVEGCLKWQKEGLK--EPEVIRKAT 690
Query: 684 EEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLK 743
E R+ D ++ + C + + E+ L K Y + + D + R ++
Sbjct: 691 EGYREDMDILGPYMSERCVVHPSAKIEAKELYKDYKNWCYEN---DEIELKNRAFYRQIE 747
Query: 744 QKGFIGGIKREKIEKEWKSKRIIKGLKL 771
+GF K E K+K G+ L
Sbjct: 748 IRGF-------KKENGAKNKVFFYGIGL 768
>gi|22855035|ref|NP_690795.1| hypothetical protein phi105_42 [Bacillus phage phi105]
gi|4126648|dbj|BAA36668.1| unnamed protein product [Bacteriophage phi-105]
Length = 806
Score = 441 bits (1134), Expect = e-121, Method: Composition-based stats.
Identities = 138/748 (18%), Positives = 263/748 (35%), Gaps = 70/748 (9%)
Query: 51 ACGFGFVCGVGEQPLYAFDID--SKDEKTANTFKDTFE-ILHGTPIVRIGQKPKILIPFR 107
G GF+ + P DID D + ++ + I T G+ I+ +
Sbjct: 64 YDGIGFMF-SKDDPFIGIDIDHCVNDGVLSPFAQEIIQTISSYTEYSPSGEGVHIIAKGK 122
Query: 108 MNKEGIKKKKTTESTQGHLDILGCGQYFVA-------YNIHPKTKKEYTWTTPPHRFKVE 160
+ ++ L++ G+YF +H ++ + T K E
Sbjct: 123 L--PLRGPGTGRKNIDKGLEVYRHGRYFTFTGSSLDVGPVHERSAEIKTIFDKYLTEKDE 180
Query: 161 DTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEE 220
P+ + E + S N + T C
Sbjct: 181 ARPVSTRSQPESDMSNLSNKEIWERMFNSKNGKSIQDLFNGQLVNDDHSSTDMALCNHLA 240
Query: 221 FYNGSHDEWIPVVMAVHHETRGSSKGKEIARR-WSKQGSTYDEENFNYKWDTFDFEEIGD 279
F+ + R S+ +E R S G+TY E + I D
Sbjct: 241 FWTD------KDASKMDSMFRESNLFREKWDRQHSADGATYGEMTIAAAIYSTGPT-ISD 293
Query: 280 TAKKRSTFTSLFY--------HHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTK 331
+++ +++ + I ++ N Y + Y + +
Sbjct: 294 LMEQQEKPYEVYFSQPPTAQVEDTEEIIDTPPTFHLTELGNAERIVYYHGKNIRYCNELE 353
Query: 332 AWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDY 391
W N +W + +I ++ ++ ED + + +
Sbjct: 354 -WLIW---NGKMWQEDSKRKIEAI---TAQTLRAIYGEAQATEDGYREKQLND--WAKKC 404
Query: 392 RRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELY 451
R+N+ N L+A + S+ LDS ++G++DL+TG + ++L
Sbjct: 405 ERRNIRMN-------TILDARPMVSVRKQELDSHKYLFNCENGVIDLKTGDLLPHDRDLL 457
Query: 452 ITKSTGTPFVEGEPSQEFLDLVSGYFESE------EVMDYFTRCVGMALLGGNKAQRFIH 505
TK + + + + + F E E++++ + +G +L G Q
Sbjct: 458 FTKISPVAYEKDADCPNWKAFMESIFIDEEGNPNYEIIEFLQKAIGYSLTGETTEQVMFF 517
Query: 506 IRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIIS 565
+ G G +GKST +N ++ G+ Y + ++ + + N + RL G+R V
Sbjct: 518 LFGNGRNGKSTFINTVQQLLGD-YGRQTNSDTFIKKKNDSS--INNDIARLDGARFVSAV 574
Query: 566 ETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625
E+ E +++ + +KQ+TGG+ M+AR + +P F F N V+ D+ WR
Sbjct: 575 ESEEGQQLSESLVKQITGGEKMSARFLRQEYFEFTP-EFKVFFTTNHKPIVKGSDEGIWR 633
Query: 626 RYIVIPFDKPIANR--DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAK 683
R ++PF I D QKL + +W ++G + +GL PE KA
Sbjct: 634 RIRLVPFTVTIPKEKVDKQLPQKLAAE-MPGILRWAVEGCLMWQKEGL--TEPEDIRKAT 690
Query: 684 EEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLK 743
E R+ D ++++ C + E+ L K Y ++ D + R L+
Sbjct: 691 EGYREDMDILGPYMEERCILHPTTKVEAKELYKDYKDWC---FENDEIELKNRAFYRQLE 747
Query: 744 QKGFIGGIKREKIEKEWKSKRIIKGLKL 771
+GF K + +K G+ L
Sbjct: 748 IRGF-------KKYRGNYNKNYFDGIGL 768
>gi|295002752|gb|ADF59173.1| gp60 [Bacillus phage phi105]
Length = 806
Score = 441 bits (1133), Expect = e-121, Method: Composition-based stats.
Identities = 138/748 (18%), Positives = 263/748 (35%), Gaps = 70/748 (9%)
Query: 51 ACGFGFVCGVGEQPLYAFDID--SKDEKTANTFKDTFE-ILHGTPIVRIGQKPKILIPFR 107
G GF+ + P DID D + ++ + I T G+ I+ +
Sbjct: 64 YDGIGFMF-SKDDPFIGIDIDHCVNDGVLSPFAQEIIQTISSYTEYSPSGEGVHIIAKGK 122
Query: 108 MNKEGIKKKKTTESTQGHLDILGCGQYFVA-------YNIHPKTKKEYTWTTPPHRFKVE 160
+ ++ L++ G+YF +H ++ + T K E
Sbjct: 123 L--PLRGPGTGRKNIDKGLEVYRHGRYFTFTGSSLDVGPVHERSAEIKTIFDKYLTEKDE 180
Query: 161 DTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEE 220
P+ + E + S N + T C
Sbjct: 181 ARPVSTRSQPESDMSNLSNKEIWERMFNSKNGKSIQDLFNGQLVNDDHSSTDMALCNHLA 240
Query: 221 FYNGSHDEWIPVVMAVHHETRGSSKGKEIARR-WSKQGSTYDEENFNYKWDTFDFEEIGD 279
F+ + R S+ +E R S G+TY E + I D
Sbjct: 241 FWTD------KDASKMDSMFRESNLFREKWDRQHSADGATYGEMTIAAAIYSTGPT-ISD 293
Query: 280 TAKKRSTFTSLFY--------HHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTK 331
+++ +++ + I ++ N Y + Y + +
Sbjct: 294 LMEQQEKPYEVYFSQPPTAQVEDTEEIIDTPPTFHLTELGNAERIVYYHGKNIRYCNELE 353
Query: 332 AWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDY 391
W N +W + +I ++ ++ ED + + +
Sbjct: 354 -WLIW---NGKMWQEDSKRKIEAI---TAQTLRAIYGEAQATEDGYRKKQLND--WAKKC 404
Query: 392 RRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELY 451
R+N+ N L+A + S+ LDS ++G++DL+TG + ++L
Sbjct: 405 ERRNIRMN-------TILDARPMVSVRKQELDSHKYLFNCENGVIDLKTGDLLPHDRDLL 457
Query: 452 ITKSTGTPFVEGEPSQEFLDLVSGYFESE------EVMDYFTRCVGMALLGGNKAQRFIH 505
TK + + + + + F E E++++ + +G +L G Q
Sbjct: 458 FTKISPVAYEKDADCPNWKAFMESIFIDEEGNPNYEIIEFLQKAIGYSLTGETTEQVMFF 517
Query: 506 IRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIIS 565
+ G G +GKST +N ++ G+ Y + ++ + + N + RL G+R V
Sbjct: 518 LFGNGRNGKSTFINTVQQLLGD-YGRQTNSDTFIKKKNDSS--INNDIARLDGARFVSAV 574
Query: 566 ETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625
E+ E +++ + +KQ+TGG+ M+AR + +P F F N V+ D+ WR
Sbjct: 575 ESEEGQQLSESLVKQITGGEKMSARFLRQEYFEFTP-EFKVFFTTNHKPIVKGSDEGIWR 633
Query: 626 RYIVIPFDKPIANR--DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAK 683
R ++PF I D QKL + +W ++G + +GL PE KA
Sbjct: 634 RIRLVPFTVTIPKEKVDKQLPQKLAAE-MPGILRWAVEGCLMWQKEGL--TEPEDIRKAT 690
Query: 684 EEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLK 743
E R+ D ++++ C + E+ L K Y ++ D + R L+
Sbjct: 691 EGYREDMDILGPYMEERCILHPTTKVEAKELYKDYKDWC---FENDEIELKNRAFYRQLE 747
Query: 744 QKGFIGGIKREKIEKEWKSKRIIKGLKL 771
+GF K + +K G+ L
Sbjct: 748 IRGF-------KKYRGNYNKNYFDGIGL 768
>gi|295399290|ref|ZP_06809272.1| phage/plasmid primase, P4 family [Geobacillus thermoglucosidasius
C56-YS93]
gi|294978756|gb|EFG54352.1| phage/plasmid primase, P4 family [Geobacillus thermoglucosidasius
C56-YS93]
Length = 765
Score = 440 bits (1131), Expect = e-121, Method: Composition-based stats.
Identities = 99/475 (20%), Positives = 185/475 (38%), Gaps = 39/475 (8%)
Query: 307 FSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDV 366
++ N + Y + + W D W K I + ++
Sbjct: 283 LTEMGNAERLVARNGENLRYCVEFEEWLIWDG---KTWVEDKKKQIERI---AIRTFREM 336
Query: 367 FDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSS 426
+ + E+N+ ++ R + + +V NS A ++ I+ + L+
Sbjct: 337 YAEAAHEENNDARNELLR--WAKASEKSSVFLNS-------IARAEAMLPISQEELNKDK 387
Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESE-----E 481
L +G++DL TG+ + +E +TK+T + ++ + F E
Sbjct: 388 FLLNCANGVVDLRTGELLPHAREYMMTKNTHVSYDPNAKCPTWMAFLESIFRDGDNVKYE 447
Query: 482 VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQN 541
++ + + +G AL G Q + G G +GKST +N IK G+ Y ++
Sbjct: 448 IISFLQKAIGYALTGDISEQVVFFLWGTGRNGKSTFINTIKALLGD-YAKQTNSNTFTAK 506
Query: 542 RPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESP 601
N + RL GSR V E+ + ++ + IKQ+TGG+ +TAR + P
Sbjct: 507 MNDSG--INNDIARLHGSRFVSAMESEDGQRLSESLIKQLTGGEPITARFLRKEFFEFVP 564
Query: 602 ASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAKKWF 659
F F N ++ D+ WRR ++PF I D +KL + +W
Sbjct: 565 -EFKIFFTTNHKPIIKGDDEGIWRRIRLVPFTYTIPKEQVDKHLPEKLMNEL-PGILRWA 622
Query: 660 LKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYS 719
++G + +GL P+ A +E ++ D +++DCC I + + + L K Y
Sbjct: 623 VEGCLKWQKEGLG--EPDEIKNATDEYKEEMDLLSNFLNDCCVIHPDAKVQLNELYKEYI 680
Query: 720 EYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPA 774
++ E+ K+ + + L +GF K +K G+ L
Sbjct: 681 DWCEENSEIPMKK---QKFSARLVLRGFEK-------RKSTGNKTFFFGIGLSTE 725
>gi|229008912|ref|ZP_04166266.1| hypothetical protein bmyco0002_56420 [Bacillus mycoides Rock1-4]
gi|228752349|gb|EEM02023.1| hypothetical protein bmyco0002_56420 [Bacillus mycoides Rock1-4]
Length = 796
Score = 440 bits (1131), Expect = e-121, Method: Composition-based stats.
Identities = 160/813 (19%), Positives = 287/813 (35%), Gaps = 128/813 (15%)
Query: 36 WEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANT--FKDTFE-ILHGTP 92
W + ++ G GF+ + P DID ++ A T +D E + T
Sbjct: 50 WSTFPTIIKFYEQGGYDGIGFMF-SKDDPFVGIDIDHCMQEGALTSLAEDIIETVNSYTE 108
Query: 93 IVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTT 152
G I I + ++T+ L++ G+YF
Sbjct: 109 YSPSGDG--IHIIAKGKLPLKGPGTGRKNTEIGLEVYRHGRYFTFTG------------- 153
Query: 153 PPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITA 212
++ P+ E+ E L F + K ++ + T+ E
Sbjct: 154 ----DCLDQVPV--EDRTEELKVLFDKYLKEKPKPERK------------QSNTSFERED 195
Query: 213 FLSCFGEEFYNGSHDEWIPVVMAVHHETRG-------SSKGKEIA--------RRWSKQG 257
S E + D A+ +G SS + + +K
Sbjct: 196 ITSLSNAELWERMFDS--KSGGAIKDLFQGILINGDHSSTDMALCNHLAFWTDKDAAKMD 253
Query: 258 STYDEENF-NYKWD---TFDFEEIG------------DTAKKRSTFTSLFYH-------- 293
S + E + KWD + D G T + Y
Sbjct: 254 SMFRESSLLREKWDKPHSSDGRTYGQMTIDTAILSTPSTIEDYEPPEEKKYEIYISDDSS 313
Query: 294 ---HGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDK 350
+ I + ++ N + Y + Y + + W N W +
Sbjct: 314 VIEDTEEIIDEVPKFHLTELGNAERIAYYHGENIRYCNELE-WLIW---NGKHWHEDSKR 369
Query: 351 ITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLE 410
+I + K E +K + R+++ NS L+
Sbjct: 370 QIEAI-----TAKTLRALYGEAKATEDKYQAKLLHDWAKKCERRSIRINS-------ILD 417
Query: 411 AGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFL 470
+ S+ LDS S +G++DL+TG+ + ++L +TK + + + +
Sbjct: 418 VRPMVSVKKKELDSHSFLFNCDNGVIDLKTGELLPHDRDLLLTKLSPIKYDKNAECPNWK 477
Query: 471 DLVSGYFE------SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524
+ F+ E++ Y + +G +L G K Q + G G +GKST +N+I+
Sbjct: 478 AFLKSIFKTPAGEADHELIHYLQKAIGYSLTGVTKEQVMFFLFGNGRNGKSTFINIIQDL 537
Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGG 584
G+ Y + ++ R N + RL G+R V E+ E +++ A +KQ+TGG
Sbjct: 538 LGD-YGRQTNSDTFLKKRNDSG--INNDVARLDGARFVSAVESEEGQQLSEALVKQITGG 594
Query: 585 DCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DAS 642
+ M+AR + +P F F N V+ D+ WRR ++IPF I D
Sbjct: 595 EKMSARFLRQEYFEFTP-EFKVFFTTNHKPIVKGSDEGIWRRIMLIPFTVTIKKENIDYD 653
Query: 643 FAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCD 702
KL K +W ++G + ++GL PE A E R+ D +ID+ C
Sbjct: 654 LPDKL-AKEMPGILRWAVEGCMKWQAEGLR--APEAVKAATAEYREDMDILAPFIDENCT 710
Query: 703 IGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKS 762
+ ++ E+ SL ++Y+++ Q + R L+ +GF K EK +
Sbjct: 711 VNSSVRIEAKSLYENYTKWCYQNNEL---ELKNRAFYRQLEVRGF-------KKEKGTGN 760
Query: 763 KRIIKGLKLK-----PAFESVDDN-SNIIDFKR 789
K I G+ L F + D++ +N+ R
Sbjct: 761 KNFILGITLNKLAGSNLFSTKDEDKNNVTPINR 793
>gi|212638627|ref|YP_002315147.1| phage associated DNA primase [Anoxybacillus flavithermus WK1]
gi|212560107|gb|ACJ33162.1| Phage associated DNA primase [Anoxybacillus flavithermus WK1]
Length = 765
Score = 439 bits (1128), Expect = e-120, Method: Composition-based stats.
Identities = 102/532 (19%), Positives = 197/532 (37%), Gaps = 53/532 (9%)
Query: 264 NFNYKWDTFDFEEIGDTAKKRSTFTSLFYH-----HGKLIPKGLLASR---------FSD 309
+ + F D + +T S H + + R ++
Sbjct: 226 EIASFLNRYFFLPPLDQREFANTINSALKHEPSGTNYSSPSPMISPERKEGEQKKFNLTE 285
Query: 310 AYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDL 369
N + Y + + W D W K I + +++
Sbjct: 286 MGNAERLVARNGQNLRYCVEFEEWLIWDG---KTWVEDKKKKIERI---AIRTFREMYAE 339
Query: 370 SEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFL 429
+ + E+N+ ++ + + + +V NS A ++ I+ + L+ L
Sbjct: 340 AAKEENNDARNELLK--WAKASEKSSVFLNS-------IARAEAMLPISQEELNKDKFLL 390
Query: 430 GEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFES-----EEVMD 484
+G++DL TG+ + +E +TK+T P+ ++ + F +++++
Sbjct: 391 NCANGVVDLRTGELLPHAREYMMTKNTHIPYDPNAKCPTWIAFLESIFRDGGDVKQDIIN 450
Query: 485 YFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544
+ + +G L G Q + G G +GKST +N +K G+ Y ++
Sbjct: 451 FLQKAIGYTLTGDISEQVVFFLWGTGRNGKSTFINTVKALLGD-YAKQTNSNTFTAKMND 509
Query: 545 EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604
N + RL GSR V E+ + ++ + IKQ+TGG+ +TAR + P F
Sbjct: 510 SG--INNDIARLHGSRFVSAVESEDGQRLSESLIKQLTGGEPITARFLRKEFFEFVP-EF 566
Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAKKWFLKG 662
F N ++ D+ WRR ++PF I D +KL + +W ++G
Sbjct: 567 KIFFTTNHKPIIKGDDEGIWRRIRLVPFTYTIPKEQVDKHLPEKLMNEL-PGILRWAVEG 625
Query: 663 VKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYR 722
+ +GL P+ A E + D +++DCC I + + L K Y ++
Sbjct: 626 CLKWQKEGLG--EPDEIKNATSEYKDEMDLLSNFLNDCCVIHPGAKVQLNELYKEYIDWC 683
Query: 723 EQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPA 774
E+ K+ + + L +GF K +K G+ L
Sbjct: 684 EENSEIAMKK---QKFSARLVLRGFEK-------RKSTGNKTFFFGIGLSNE 725
>gi|291541585|emb|CBL14695.1| phage/plasmid primase, P4 family, C-terminal domain [Ruminococcus
bromii L2-63]
Length = 774
Score = 436 bits (1120), Expect = e-119, Method: Composition-based stats.
Identities = 154/793 (19%), Positives = 281/793 (35%), Gaps = 78/793 (9%)
Query: 6 WKEQAKQAIHNGFKLIPLRL---GDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGE 62
W+ H+G P+ G P W + + + K GF F
Sbjct: 29 WQSYPDPKSHSGISKKPINPRTGGFAMPNNSDTWSDFETAVRESAKYSGIGFMF----SN 84
Query: 63 QPLYAFDIDSKDEKT-------ANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKK 115
P + D+D A+ F + K + +
Sbjct: 85 SPFFGVDLDDMPNDIQDYQNGGADNIISEFVNTLQSYTEFSQS--KTGVHIICKGTLPEG 142
Query: 116 KKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTT-------PPHRFKVEDT--PLLS 166
++ ++ G ++ G++FV Y + P H + P
Sbjct: 143 RRKAKNDSGGFEMYENGRFFVVTG---DYCSAYAYINDCTESIKPLHSKYLGKATEPQPK 199
Query: 167 EEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNG-S 225
++E +I V + K+ K + + Y+++ C F+ G
Sbjct: 200 LRNIEVNLNTVDDI-VRAACNAKNGSLFKALYSGDFSAYSSQSEADMAFCNMLAFWCGCD 258
Query: 226 HDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYD----EENFNYKWDTFDFEEIGDTA 281
D+ + R S ++ R + G+TY ++ + T++ ++ D +
Sbjct: 259 TDK-------MDSIFRQSGLMRDKWDR-KQSGTTYGIITLQKAVSGCTQTYNPKQHNDYS 310
Query: 282 KKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNV 341
++ + + + A F D N F + Y K WY N
Sbjct: 311 ISIGEGKAVQAVNEEKMR----AYTFDDMGNADRFVDLFGDNVRYCYTEKKWYYY---NS 363
Query: 342 YIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSK 401
W + + + + V + L + ++ N S F + R N +
Sbjct: 364 MKWCVDNIGVVLRMADKSVEAMKAEARLYLQADEENGGDMSKAFEKHMKASRSNKSKK-- 421
Query: 402 AKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFV 461
A E + +D L GI++L+ G+ E Y TK T
Sbjct: 422 ----AMLNEVEHHIPVLPAQMDKYRMALNTPSGIINLKNGEVRAHNPEYYFTKITSVDCS 477
Query: 462 EGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNL 520
+ +L + F +E++ Y + VG +L G Q + G G +GKST +++
Sbjct: 478 QTAECPRWLAFLDDIFAGDKELIRYIQKAVGYSLTGSTAEQCAFFLYGTGRNGKSTFIDV 537
Query: 521 IKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQ 580
I+ FG+ Y N + IM R ++ N + RL G+R+V E NE IN +KQ
Sbjct: 538 IRDVFGD-YAANIQPETIMV-RNSQSSAINSDIARLKGARLVTSVEPNEGVRINEGLLKQ 595
Query: 581 MTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR- 639
+TG D +TAR Y + P F ++ N +R D WRR +IPF+ I
Sbjct: 596 LTGDDTVTARKLYSEEFEFKP-EFKLWMATNHKPIIRGTDTGIWRRIHMIPFNVQIPEDK 654
Query: 640 -DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID 698
D + KL+ + KW + G + +GL +P L++ E ++ D A+I+
Sbjct: 655 VDKNLTHKLKAE-MTAIFKWCIDGCILWQREGLK--MPSAVLQSVREYKREMDVISAFIE 711
Query: 699 DCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEK 758
D C + + ++ +L +Y+ + Y +S + L ++ F +
Sbjct: 712 DRCVLEGS--VQASTLYAAYTSWAGDNNEY---CMSNTKFSTELAKR-FE--------KV 757
Query: 759 EWKSKRIIKGLKL 771
K+ G+ L
Sbjct: 758 RGKNYNFFNGISL 770
>gi|300766173|ref|ZP_07076138.1| phage/plasmid primase P4 [Listeria monocytogenes FSL N1-017]
gi|300513131|gb|EFK40213.1| phage/plasmid primase P4 [Listeria monocytogenes FSL N1-017]
Length = 757
Score = 434 bits (1117), Expect = e-119, Method: Composition-based stats.
Identities = 118/479 (24%), Positives = 210/479 (43%), Gaps = 45/479 (9%)
Query: 304 ASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMK 363
A RF D ++ + Y F Y D+K W K D + + + + + MK
Sbjct: 318 AERFRDKFHDIVRYSYINKGFYY-YDSKVW-KYDN---------IGAVKTLVDDVIKDMK 366
Query: 364 EDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLD 423
SE +++ F + R N + + K EA + + + D
Sbjct: 367 ------SEFAYMESESDAEKAFMKHLKATRSNKGKTNMLK------EAQHLMPVLPEEFD 414
Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEV 482
FL Q+G ++L++G+ + ++ TK + + + + + + ++ F +E+
Sbjct: 415 RYKYFLNTQNGYINLQSGELLDHDRQKMFTKISNIEYTDKIDAPLWENFLNDIFAGDQEL 474
Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542
+ Y + VG +L G Q + G G +GKS +++I FG+ Y N + IM +
Sbjct: 475 IHYIQKAVGYSLSGSTSEQVMFILFGNGRNGKSVFLDIINDIFGS-YATNIQPQTIMVKQ 533
Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602
++ AN + RL G+R V +E NE ++ +KQ+TGGD +TAR Y + + +P
Sbjct: 534 --QSSNANSDIARLHGARFVTTTEPNEGVRLDEGLVKQLTGGDKVTARHLYKDEFEFTP- 590
Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAKKWFL 660
F ++ N +R DD WRR ++PF I + D KL ++ T W +
Sbjct: 591 EFKIWMATNHKPIIRGRDDGIWRRLHLVPFTVKIPDEKVDKQLKYKLRSELT-GILNWAV 649
Query: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSE 720
+G + +GL +P+ A E + D A+I+DCCD+GE + L ++Y E
Sbjct: 650 EGFLKWQREGLG--MPKSVENASSEYKSEMDVITAFIEDCCDVGEKQEVDVKVLYETYRE 707
Query: 721 YREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVD 779
+ + Y +S L G+K EK K+ S+R G+ L + ++
Sbjct: 708 WAKDNGQY---LMSNTKFGKEL-------GLKFEK--KKTNSRRKYIGVALNKEYFKIN 754
>gi|292491152|ref|YP_003526591.1| phage/plasmid primase, P4 family [Nitrosococcus halophilus Nc4]
gi|291579747|gb|ADE14204.1| phage/plasmid primase, P4 family [Nitrosococcus halophilus Nc4]
Length = 715
Score = 433 bits (1113), Expect = e-119, Method: Composition-based stats.
Identities = 153/778 (19%), Positives = 271/778 (34%), Gaps = 97/778 (12%)
Query: 8 EQAKQAIHNGFKLIPLRLGDKRPQRLGKWE-----EQLLSSEKIDKLPACGFGFVCGVGE 62
A G++L+P+ K P L +W + + + + P G G
Sbjct: 6 SHAITYAQQGYRLLPVTPNGKVPL-LKEWTKKATRDPAILEDYWRRWPKANIGLATGEDS 64
Query: 63 QPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRI-GQKPKILIPFRMNKEGIKKKKTTES 121
+ D+D K + E +G + + P + G +
Sbjct: 65 G-CFVLDVDVKKGAPGEQSLEELESEYGVLPETLKAKTPSGGFHYFFQHPGGRLGNRANF 123
Query: 122 TQGHLDILGCGQYF-VAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEI 180
G LDI G G Y VA ++ K Y W + P ++L + E
Sbjct: 124 RPG-LDIRGDGGYVLVAPSV--VEGKAYNWLNE--GTPPAEAP-------DWLLELLHEG 171
Query: 181 TVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHET 240
P V + N D ++ H
Sbjct: 172 PKPTVPGGAAQALKGVAEGQRN------------------------DSVFRYAASLLHRG 207
Query: 241 RGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPK 300
+ + + + + + + E+ + + + L +
Sbjct: 208 LRYEEAQTLIGKAAGKCNPPLPED-----EALRCLDSAYGRYSPTPQRPL--------TE 254
Query: 301 GLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLV 360
A R D + + + Y W + + W ++ +++ +V
Sbjct: 255 LGNAERLVDRFGEVV---------RYLPAYHHWLLWNGTH---WQISEKGEIEQLVHAVV 302
Query: 361 SMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSD 420
+ D E + ++ R+ + S S A +LE ++
Sbjct: 303 RGIKVEAD----AETDTTRKENLIKHGRNSERKTAI---SNMLSLAATLE---GIALAPH 352
Query: 421 LLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE-S 479
LD+ G ++G++DL TGQ P Y+TK F G + V
Sbjct: 353 QLDADPYAFGVENGVVDLRTGQLRPPNTVDYLTKFGHVGFQPGAQCPRWEHFVLEVMGGD 412
Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539
++++ + R VG L+GGN Q + G G +GKSTL+ +I+ G+ Y A +
Sbjct: 413 KDLVSFLQRAVGATLVGGNSDQVIFILHGGGANGKSTLLRIIQTLMGS-YARAAGNALFT 471
Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599
NR G ++RL +R+V+ SE E + +N +K+MTG D +T R+ YG E
Sbjct: 472 VNRFQNQGGPREDIVRLKDARMVLTSELGEGEILNEDLVKRMTGDDTLTGRVPYGKASIE 531
Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKK 657
FTP++ N +R D A WRR +IPF++ A +D + L +
Sbjct: 532 FRPQFTPWMATNHKPIIRGDDHAIWRRVKLIPFEQTFAGKKQDKGLSHALLQEL-PGILN 590
Query: 658 WFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKS 717
W ++G A+ GL P+V +A E R D W+++ C G ++ L +
Sbjct: 591 WAIQGCLAWQKGGL--TPPQVVEEATREYRSEMDLLGEWLEERCVQGAEHKAKNADLYQD 648
Query: 718 YSEYREQELNYDRKR--ISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773
Y ++ E + K+ + R L KGF + + R +G+ K
Sbjct: 649 YLDWSEAQYGIRGKKHCLDPRVFGRKLAAKGFT--------RIKIQGGRGFQGIACKN 698
>gi|217964665|ref|YP_002350343.1| phage/plasmid primase, P4 family [Listeria monocytogenes HCC23]
gi|217333935|gb|ACK39729.1| phage/plasmid primase, P4 family [Listeria monocytogenes HCC23]
gi|307570771|emb|CAR83950.1| bacteriophage primase [Listeria monocytogenes L99]
Length = 762
Score = 431 bits (1108), Expect = e-118, Method: Composition-based stats.
Identities = 118/477 (24%), Positives = 210/477 (44%), Gaps = 47/477 (9%)
Query: 304 ASRFSDAYNKAM-FSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSM 362
A RF D ++ + FS KG + Y D+K W K D + + + + + M
Sbjct: 318 AERFRDKFHDIVRFSYINKGFYYY--DSKVW-KYDN---------IGAVKTLVDDVIKDM 365
Query: 363 KEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLL 422
K SE +++ F + R N + + K EA + + +
Sbjct: 366 K------SEFAYMESESDAEKAFMKHLKATRSNKGKTNMLK------EAQHLMPVLPEEF 413
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEE 481
D FL Q+G ++L++G+ + ++ TK + + + + + + ++ F +E
Sbjct: 414 DRYKYFLNTQNGYINLQSGELLDHDRQKMFTKISNIEYTDKIDAPLWENFLNDIFAGDQE 473
Query: 482 VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQN 541
++ Y + VG +L G Q + G G +GKS +++I FG+ Y N + IM
Sbjct: 474 LIHYIQKAVGYSLSGSTSEQVMFILFGNGRNGKSVFLDIINDIFGS-YATNIQPQTIMVK 532
Query: 542 RPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESP 601
+ ++ AN + RL G+R V +E NE ++ +KQ+TGGD +TAR Y + + +P
Sbjct: 533 Q--QSSNANSDIARLHGARFVTTTEPNEGVRLDEGLVKQLTGGDKVTARHLYKDEFEFTP 590
Query: 602 ASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAKKWF 659
F ++ N +R DD WRR ++PF I + D KL ++ T W
Sbjct: 591 -EFKIWMATNHKPIIRGRDDGIWRRLHLVPFTVKIPDEKVDKQLKYKLRSELT-GILNWA 648
Query: 660 LKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYS 719
++G + +GL +P+ KA E + D A+I+DCC+ GEN + +L ++Y
Sbjct: 649 VEGFLKWQREGLG--MPKAVEKASSEYKSEMDVITAFIEDCCETGENKQINAKTLYETYR 706
Query: 720 EYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFE 776
E+ Y +S+ + G+K EK K + K + L +
Sbjct: 707 EWARDNGQY---LMSSTKFGKEM-------GLKFEK--KRSNGQTAYKCITLNKEYN 751
>gi|331701892|ref|YP_004398851.1| phage/plasmid primase, P4 family [Lactobacillus buchneri NRRL
B-30929]
gi|329129235|gb|AEB73788.1| phage/plasmid primase, P4 family [Lactobacillus buchneri NRRL
B-30929]
Length = 767
Score = 431 bits (1108), Expect = e-118, Method: Composition-based stats.
Identities = 162/803 (20%), Positives = 286/803 (35%), Gaps = 99/803 (12%)
Query: 6 WKEQAKQAIHNGFKLIPLRLGDKRPQRLG---KWEEQLLSSEKIDKLPACGFGFVCGVGE 62
W+ + N + IP D R W + + + + G F G
Sbjct: 23 WQPE-----RNKYTKIPHNALDGGAGRTNDPSTWTDYQTALKALQTYKMDGLAFYFANGY 77
Query: 63 QPLYAFDID-SKDEKTANTFKDTFE------ILHGTPIVRIGQKPKILIPFRMNKEGIKK 115
DID DE +D + + V I K + K
Sbjct: 78 ---VGLDIDHIGDELEKYAAQDYQQNEVQDVLTMTKSYVEISLSGKGIHAI-----FKGK 129
Query: 116 KKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFK 175
+G++++ G++F KT Y + + E L+ ++ F
Sbjct: 130 IPGDRRRKGNVEMYESGRFFALTG---KTIGPY--SDRINTPNSEVMKLI----YKHYFG 180
Query: 176 FFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREI--TAFLSCFGEEFYNGSHDEW---- 229
+ +P + + EI A LS G+ F H W
Sbjct: 181 ESNVVKLPNQAPIR------------PNDLSVDEIIKRAELSRTGKRFKMFMHGGWEGFY 228
Query: 230 ---------IPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWD-TFDFEEIGD 279
+A R +K EI R+ S YDE++ + + + I +
Sbjct: 229 TSHSEADLAFSNDLAFWTG-RDFNKMDEIFRKSSLMRPKYDEKHGKTTYGVSLLNKSINE 287
Query: 280 TAKKRSTFT-SLFYHHGKLIP----KGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWY 334
T + + L ++ K + K L + D N F Y+ K+WY
Sbjct: 288 TRETFNPQQHPLHKYNLKFLQSKPKKKLPPRSWDDTGNADRFIDVFGNLVKYSYVDKSWY 347
Query: 335 KKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQ 394
N Y K + + +MK + ++ + +F
Sbjct: 348 FY--NGSYWEMDDQGKAAQFVDMTVDNMKNEKLHVAAGVDPEKAKVAWEKFLK------- 398
Query: 395 NVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITK 454
+ S A A E + D L +G +DL +G + +
Sbjct: 399 --KSRSHAAKQAMISEVQHRVPVLHGQFDQDKTLLNTVNGYIDLTSGILKDHDIKKMFSH 456
Query: 455 STGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSG 513
T + + E+ + ++ F +E++ Y + VG + G K Q + G G +G
Sbjct: 457 QTSVEYTDKIDCPEWDEFLNQIFAGDQELIHYIQKAVGYSATGSIKEQVMFILYGNGRNG 516
Query: 514 KSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI 573
KS ++ I G Y + +A IM + AN + RL +R+V SE NE +
Sbjct: 517 KSIFIDTISDILGT-YAKSMQADSIMVRQNKSG--ANSDIARLESARLVTSSEPNEGVRL 573
Query: 574 NAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFD 633
+ +KQ+TGGD +TAR YG + P F ++ N +R DD WRR ++IPF
Sbjct: 574 DEGLVKQLTGGDKVTARYLYGKEFEFKP-QFKLWLATNHKPIIRGTDDGIWRRLMLIPFK 632
Query: 634 KPIAN--RDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTD 691
I + D + KL+ + ++ W ++G + +GL+ P +A + R+ D
Sbjct: 633 VKIPDGQVDKNLKDKLKRE-SVGILNWIVEGCLLWQREGLNP--PISVTRASRQYREEMD 689
Query: 692 TYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGI 751
++DDCC++ ++ + L K Y + + Y +S + + +KQK F
Sbjct: 690 VISLFVDDCCEVSDSYRAPAGELFKKYQSWAKDNSEYS---MSKQKFSREMKQK-FEF-- 743
Query: 752 KREKIEKEWKSKRIIKGLKLKPA 774
K+ + R +G+K+K
Sbjct: 744 ------KKTMTGRFYEGIKIKTD 760
>gi|22296557|ref|NP_680517.1| putative primase [Lactobacillus phage A2]
gi|6599326|emb|CAB63672.1| putative primase [Lactobacillus phage A2]
Length = 770
Score = 431 bits (1107), Expect = e-118, Method: Composition-based stats.
Identities = 133/545 (24%), Positives = 217/545 (39%), Gaps = 52/545 (9%)
Query: 251 RRWSKQGSTYDEENFNY-KWDTF--DFEEIGDTAKKRSTFTSLFYH----HGKLIPKGLL 303
R +SK S + + KWD T K TS YH K GL+
Sbjct: 248 RDFSKMDSIFRGSSLMRPKWDEKHGKTTYGVATLNKAINETSNVYHPERERMKYDLSGLM 307
Query: 304 ASRF-----------SDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKIT 352
D N F + Y+ KAWY N Y K+
Sbjct: 308 GESKKPKKKLPPRSWDDTGNAQRFVDHFGDAARYSYVDKAWYVY--NGSYWELDKQGKLG 365
Query: 353 ASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAG 412
+ + + MK + +++ + K +F + NS K+ + L
Sbjct: 366 SMVDIVVDDMKREKIVIADGMDPEEAKKKWSKFLKQS-------RSNSAKKAMTEQLR-- 416
Query: 413 SIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDL 472
++ + D L +G +DL G+ + +K TG + + S E+
Sbjct: 417 HRLAVMPEEFDRDKILLNTINGYVDLSDGELHDHDVKKMFSKETGVEYTDTVDSPEWRQF 476
Query: 473 VSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVI 531
+ F+ EE++DY + +G +L G + Q + G G +GKS M+ +K+ G+ Y
Sbjct: 477 LDQIFDHDEELIDYLQKAIGYSLTGSTEEQVMFILYGNGRNGKSVFMDTLKHVAGS-YAK 535
Query: 532 NAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARL 591
+ A IM + A AN + RL G+R+V SE NE ++ +K++TGGD +TAR
Sbjct: 536 SMSAKSIMIKQSDSA--ANSDIARLKGARLVTASEPNEGVRLDEGLVKELTGGDMVTARF 593
Query: 592 NYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLET 649
YG+ + P F ++ N +R DD WRR ++IPF+ I D A KLE
Sbjct: 594 LYGSEFEYKP-EFKLWLATNHKPIIRGTDDGIWRRLMLIPFNVQIPENKVDKRLAYKLER 652
Query: 650 KYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWE 709
+ ++ W + G + +GL P A + R DT + ++ DCCD+ +
Sbjct: 653 E-SVGILNWAVDGALKWQREGLK--APASVQAASKSYRAEMDTLELFVRDCCDLRPDYQA 709
Query: 710 ESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGL 769
+ L K+Y + E Y ++ + +KQK + S GL
Sbjct: 710 PAGELFKAYQSWAESNGEYKMRK---QKFGAEMKQK----------FMSKKNSGIFYVGL 756
Query: 770 KLKPA 774
K+K
Sbjct: 757 KIKSD 761
>gi|56963140|ref|YP_174867.1| hypothetical protein ABC1368 [Bacillus clausii KSM-K16]
gi|56909379|dbj|BAD63906.1| phage-related protein [Bacillus clausii KSM-K16]
Length = 791
Score = 429 bits (1104), Expect = e-118, Method: Composition-based stats.
Identities = 131/765 (17%), Positives = 266/765 (34%), Gaps = 77/765 (10%)
Query: 36 WEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDID--SKDEKTANTFKDTFEILHGTP- 92
W + + +K G GF+ + P D+D +D ++ + + L
Sbjct: 50 WTTFENAVKAYEKGEFDGIGFMF-SSDDPFIGIDLDHCIEDGAYSDDARKIVDQLDSYTE 108
Query: 93 IVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTT 152
+ G + I + ++ + +++ G+YF
Sbjct: 109 LSPSGDG--LHIIVKGKIPLRGPGTGKKNVERGIEVYRHGRYFTFTG------------N 154
Query: 153 PPHRFKVEDTPLLSEEDVEYLFKFF-QEITVPLVKDKKSIIPSKTWTNNNNRQYTNREIT 211
H V++ ++ + + ++++ P +++ + + + +++
Sbjct: 155 VVHSTGVQERSDALKDFWQAYMEEKPKKVSTPSPPQQRTRTSDLSERELWEKMFNSKKGA 214
Query: 212 AFLSCFGEEFYNGSHDE-----------WIPVVMA-VHHETRGSSKGKEIARRWS-KQGS 258
+ F N H W A + R S ++ R + GS
Sbjct: 215 DIKALFDGHLINDDHSSSDLALCNHLAFWTDADEAKMDRMFRESGLMRDKWDRQANSDGS 274
Query: 259 TYDEENFNYKWDTFDFEEIGD----TAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKA 314
TY + + I D + F K R S+ N
Sbjct: 275 TYGQITIRNA-ASQCPSTISDFVPQQREPYQVFFPQAGDDEFKSSKPFF--RLSELGNAE 331
Query: 315 MFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPE 374
Y + + W D W K SI + + + +
Sbjct: 332 RIVYEHGKDIKYCPERE-WLIWDGKR---WIEDSKKEIESITARTLRAIYKEANQAS--Q 385
Query: 375 DNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDG 434
D++K + + R++V NS L+ + S+T++ LD ++G
Sbjct: 386 DDDKQMAKKLYDWAQKCERRSVRVNS-------ILDMRPMVSVTNEELDKHPYLFNCKNG 438
Query: 435 ILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESE------EVMDYFTR 488
++DL+TG+ + ++ TK + + + ++ + F+ + E++ + +
Sbjct: 439 VIDLKTGELLSHDRKYLFTKISDVEYDKSAKCPNWIKFLESIFQDDQGNVDYELIRFMQK 498
Query: 489 CVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGK 548
+G L G Q+ + G G +GKST +N I+ G Y + + R
Sbjct: 499 AIGYTLTGDISEQQMFFLFGTGRNGKSTFINTIQRILG-AYGKQTNSDTFI--RKKNDSG 555
Query: 549 ANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFI 608
N + RL +R V E+ E +++ + +KQ+TGG+ MTAR + +P F F
Sbjct: 556 INNDIARLDKARFVSAVESEEGQQLSESLVKQITGGERMTARFMRQEFFEFTP-EFKVFF 614
Query: 609 VPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAKKWFLKGVKAY 666
N +R D+ WRR IPF I D QKLE + W ++G +
Sbjct: 615 TTNHPPVIRGSDEGIWRRICQIPFKVTIPKSQVDRRLPQKLEAE-MPGILAWAVEGCLLW 673
Query: 667 ISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQEL 726
+GL + P+ +A + R+ D ++++ C + E E+ + Y ++ +
Sbjct: 674 QKEGL--EHPKSIKQATQAYREDMDILGPFLEEKCIVSEIAEIEAKEIYNEYKDFCFKNG 731
Query: 727 NYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771
+ + R L+ +GF + G+ L
Sbjct: 732 EF---ELKNRAFYRLLESRGFKKKKGAKNK-------TFFVGVSL 766
>gi|227528969|ref|ZP_03959018.1| phage primase [Lactobacillus vaginalis ATCC 49540]
gi|227351106|gb|EEJ41397.1| phage primase [Lactobacillus vaginalis ATCC 49540]
Length = 803
Score = 429 bits (1102), Expect = e-117, Method: Composition-based stats.
Identities = 155/803 (19%), Positives = 279/803 (34%), Gaps = 93/803 (11%)
Query: 5 QWKEQAKQAI--HNGFKLIPLRLGDKRPQRLG---KWEEQLLSSEKIDKLP-ACGFGFVC 58
QW + + N + IPL + + W + + + IDK P A G F
Sbjct: 45 QWGNYHRIWVEKRNKYTKIPLNPWNGEDGKSNDSSTWSDFDTALQAIDKYPQADGLAFYF 104
Query: 59 GVGEQPLYAFDID-SKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGI---- 113
G DID DE D+ + ++ + + M+ EGI
Sbjct: 105 ANGY---VGLDIDHIADELDKVREGDSDPENYVNKAHQLTKG--SYMEISMSGEGIHCIF 159
Query: 114 -KKKKTTESTQGHLDILGCGQYFVAYNI------------HPKTKKEYT--WTTPPHRFK 158
K +G+ ++ G++F H + K YT +
Sbjct: 160 KGKIPGNRRRKGNYEMYQSGRFFALTGNTLNSQPTIKSLDHEEMAKLYTHYFGNDKVMPF 219
Query: 159 VEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFG 218
+++P ++ D+ E+ + Y +
Sbjct: 220 PQNSPQITTNDLS-----LDEVISRAERSSSGKRFKMFMEGGWEDFYPSHSEADMAFAND 274
Query: 219 EEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWD-TFDFEEI 277
F+ G R ++ I R+ S +D + + + I
Sbjct: 275 LAFWTG----------------RDFNQMDTIFRQSSLMRPKFDSKRGKTTYGIALLNKAI 318
Query: 278 GDTAKKRSTFTSLFYHHG-----KLIPKGLLASR-FSDAYNKAMFSIYKKGHFLYTADTK 331
+T+ + +++ K R + D N F +F Y+ K
Sbjct: 319 NETSDVFNPHGKPEFNYDLSFLNNDDSKKKHPQRSWDDMGNAQRFMDMYGDNFKYSYIDK 378
Query: 332 AWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDY 391
+Y NN Y + N + +MK + ++ + +D + D+
Sbjct: 379 CFYYY--NNSYWEPDQTGIVEKCADNVISNMKNEKIHVAPDVKDED---------AKKDW 427
Query: 392 RRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELY 451
+ + S E + D L + G +DL +G ++
Sbjct: 428 EKFLKKSRSNRSKKNMLEELKHHIPVLHSQFDKEIMLLNTKSGYVDLNSGVLHDHDRDKM 487
Query: 452 ITKSTGTPFVEGEPSQEFLDLVSGYFES-EEVMDYFTRCVGMALLGGNKAQRFIHIRGVG 510
++ T + + E+ + F + EE++ Y + VG + G K Q + G G
Sbjct: 488 FSQQTAAEYTDNIDCPEWDKFLHQVFNNNEELIHYIQKAVGYSATGSVKEQVMFILYGNG 547
Query: 511 GSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN 570
+GKS +N I G Y S IM AN + RL G+R+VI SE NE
Sbjct: 548 RNGKSVFINTIADILGT-YAETMNVSSIMVK---NNNGANSDIARLEGARLVISSEANEG 603
Query: 571 DEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVI 630
++ +KQ+TGGD + AR YGN + +P F ++ N +R D+ WRR ++I
Sbjct: 604 SRLDEGLLKQLTGGDKIVARHLYGNEFEFNP-EFKLWMATNHKPLIRGTDEGIWRRIMLI 662
Query: 631 PFDKPIANR--DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQ 688
PF I D KL+ + W ++G + ++GL+ PE+ KA +E +
Sbjct: 663 PFTVQIPKDKVDKDLKYKLQRE-GTGILNWIVQGAMMWQAEGLNP--PEIVTKASQEYKD 719
Query: 689 GTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFI 748
D ++ + C+ G + + L Y E+ + Y + + +K+K F
Sbjct: 720 EMDVVSYFVSEKCETGSDYKVPAGELFNVYREWANESGEYSMPK---QKFGREMKKK-FE 775
Query: 749 GGIKREKIEKEWKSKRIIKGLKL 771
K + R GL++
Sbjct: 776 --------YKRTMNGRYYLGLRI 790
>gi|284801589|ref|YP_003413454.1| hypothetical protein LM5578_1342 [Listeria monocytogenes 08-5578]
gi|284994731|ref|YP_003416499.1| hypothetical protein LM5923_1295 [Listeria monocytogenes 08-5923]
gi|284057151|gb|ADB68092.1| hypothetical protein LM5578_1342 [Listeria monocytogenes 08-5578]
gi|284060198|gb|ADB71137.1| hypothetical protein LM5923_1295 [Listeria monocytogenes 08-5923]
Length = 762
Score = 426 bits (1095), Expect = e-117, Method: Composition-based stats.
Identities = 118/477 (24%), Positives = 209/477 (43%), Gaps = 47/477 (9%)
Query: 304 ASRFSDAYNKAM-FSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSM 362
A RF D ++ + FS KG + Y D+K W K D + + + + + M
Sbjct: 318 AERFRDKFHDIVRFSYINKGFYYY--DSKVW-KYDN---------IGAVKTLVDDVIKDM 365
Query: 363 KEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLL 422
K SE +N++ F + R N + + K EA + + +
Sbjct: 366 K------SEFAYMDNESDAEKAFMKHLKATRSNKGKTNMLK------EAQHLMPVLPEEF 413
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEE 481
D FL Q+G ++L+ G+ + ++ TK + + + + + ++ F +E
Sbjct: 414 DRYKYFLNTQNGYINLQNGELINHDRQKMFTKISNIEYTDKIDAPLWQAFLNDIFAGDKE 473
Query: 482 VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQN 541
+++Y + VG +L G Q + G G +GKS +++I FG+ Y N + IM
Sbjct: 474 LINYIQKAVGYSLSGSTSEQVMFILFGNGRNGKSVFLDIINDIFGS-YATNIQPQTIMVK 532
Query: 542 RPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESP 601
+ ++ AN + RL G+R V +E NE ++ +KQ+TGGD +TAR Y + + +P
Sbjct: 533 Q--QSSNANSDIARLHGARFVTTTEPNEGVRLDEGLVKQLTGGDKVTARHLYKDEFEFTP 590
Query: 602 ASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAKKWF 659
F ++ N +R DD WRR ++PF I + D KL ++ T W
Sbjct: 591 -EFKIWMATNHKPIIRGRDDGIWRRLHLVPFTVKIPDEKVDKQLKYKLRSELT-GILNWA 648
Query: 660 LKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYS 719
++G + +GL +P+ A E + D A+I+DCC+ GEN + +L ++Y
Sbjct: 649 VEGFLKWQKEGLG--MPKAVENASSEYKSEMDVITAFIEDCCETGENKQINAKTLYETYR 706
Query: 720 EYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFE 776
E+ Y +S+ + G+K EK K + K + L +
Sbjct: 707 EWARDNGQY---LMSSTKFGKEM-------GLKFEK--KRSNGQTAYKCITLNKEYN 751
>gi|258516810|ref|YP_003193032.1| P4 family phage/plasmid primase [Desulfotomaculum acetoxidans DSM
771]
gi|257780515|gb|ACV64409.1| phage/plasmid primase, P4 family [Desulfotomaculum acetoxidans DSM
771]
Length = 798
Score = 426 bits (1094), Expect = e-116, Method: Composition-based stats.
Identities = 113/543 (20%), Positives = 204/543 (37%), Gaps = 44/543 (8%)
Query: 250 ARRW---------SKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPK 300
R W S+ D + + + D +F+ + + + + K K
Sbjct: 237 WRSWRGELFEVRLSESTGAKDPNDLHKQ-DPDNFKNVFMEVLSAAKPLEIVNQNLKSEAK 295
Query: 301 GLLAS--RFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNF 358
+ A+ +D N Y K W N W + T +++
Sbjct: 296 HMFANGNNLTDLGNTRRLVTQHGQTIRYCHIWKKWLIW---NGKFWEIDN---TGAVVRL 349
Query: 359 LVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSIT 418
+ ++ + + D D+ R++ E S+ K+ E+ I+
Sbjct: 350 AKNTVMSIYAEASKESDEGLRKALV------DHARKS-EAASRIKAMITLAESEEGIPIS 402
Query: 419 SDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE 478
D LD++ L +G +DL+TG+ + ++ YITK + + ++ E
Sbjct: 403 PDQLDNNRWLLNCLNGTVDLKTGKLLPHRRDDYITKIAPVEYRPDVECPIWHTFLNEIME 462
Query: 479 SEE-VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
+ ++ + R GM L G + G G +GKSTL+N++ N Y I A
Sbjct: 463 DNQNLVSFLQRAAGMCLTGDVSEHVLFVLHGNGRNGKSTLLNIMLDIM-NDYSIQAPPDL 521
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
+M + L L G R+V+ E++E + + IKQ+TGGD + AR + +
Sbjct: 522 LMAKHNE---RHPTELADLFGKRLVVSIESDEGRRMAESLIKQLTGGDKIKARRMREDFW 578
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD-ASFAQKLETKYTLEAK 656
P S ++ N VR D A W R +IPF+ A R+ KL T+
Sbjct: 579 EFWP-SHKLWLATNHKPQVRGTDTAIWSRLKLIPFNVSFAGRENKQLPAKLLTE-KPGIF 636
Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAK 716
KW ++G A+ +GL +P+ A E R DT ++ + C + + + +
Sbjct: 637 KWLVEGCLAWQREGLG--VPDEVQAATEIYRTEQDTLGNFLTEHCITNPLVRVPASDIYR 694
Query: 717 SYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFE 776
+Y + E Y +S + L ++GF K + G+ L
Sbjct: 695 AYKAWCENNNEY---VLSQKIFGTRLSERGF------NKSRGTKTGGYVWYGIGLLNDLN 745
Query: 777 SVD 779
+
Sbjct: 746 DTE 748
>gi|262047920|ref|ZP_06020865.1| phage primase [Lactobacillus crispatus MV-3A-US]
gi|260571773|gb|EEX28349.1| phage primase [Lactobacillus crispatus MV-3A-US]
Length = 776
Score = 426 bits (1094), Expect = e-116, Method: Composition-based stats.
Identities = 165/796 (20%), Positives = 283/796 (35%), Gaps = 103/796 (12%)
Query: 18 FKLIPLRL---GDKRPQRLGKWEEQLLSSEKIDKLP-ACGFGFVCGVGEQPLYAFDIDSK 73
+ IP G + W + + + K P A G F G D+D
Sbjct: 34 YTKIPKNPYNFGAGKSNDQRTWSDFETALRALKKYPQADGLAFYFANG---FVGLDVDHI 90
Query: 74 DEKTAN---------TFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQG 124
D A+ + F+ L + I Q K L K G
Sbjct: 91 DSDLADYEEGDTDPNNLVNHFKSLTHNSYMEISQSGKGLHVI-----FKGKIPGKYRRHG 145
Query: 125 HLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPL 184
+ ++ G++F K + ++ V L + +
Sbjct: 146 NYEMYESGRFFALTG--NTIGKPVIKSLDESEMTTLYEFCFGKDKVTPLHPEIDDNDETI 203
Query: 185 VKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSS 244
II + + +++T F + + ++ MA ++
Sbjct: 204 DLSVTEIIKRAEESPKSGKRFTL---------FMQGGWEQFYNTQSEADMAFANDLAFW- 253
Query: 245 KGKEIARRWSKQGSTY-DEENFNYKWDTFDFEEIGDTAKKRSTFTSLF------------ 291
G++I K + + KWD D +
Sbjct: 254 CGRDI----HKMDQIFRNSSLIRDKWDRQDGATTYGQRTLQKAINETPNVYNPSSENTGN 309
Query: 292 ----YHHGKLIPKG------LLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNV 341
++ K PK +A RF D Y K +FLY+ K WY N
Sbjct: 310 YIFSFNEKKQKPKHYTQDDMGMAQRFIDKYGK---------NFLYSYVDKEWYIY--NGS 358
Query: 342 YIWSLTLDKITASIMNFLVSMKED--VFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEEN 399
Y T I + + + + +D V D S +D ++ K+ + N E
Sbjct: 359 YWSPDTKGYIETAADHVIKDLAKDGPVIDPSLPEKDQDRIIKNWNKFVNH--------ER 410
Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTP 459
S + E +T + + L G +DL G+ T TG+
Sbjct: 411 SHKAKVDLTKELQHRLPVTHSMWNQEDMLLNTPSGYVDLTNGKLHPHDISKMFTAETGSE 470
Query: 460 FVEGEPSQEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLM 518
+ + S + + F+ EEV+ Y + +G + G K Q G G +GKS L+
Sbjct: 471 YSDTIDSPNWRKFLKQIFQNDEEVIHYVQKAIGYSFTGSTKEQVMFIPYGNGRNGKSVLL 530
Query: 519 NLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKI 578
+ I+ G Y S IM + AN + RL GSR+VI SE NE ++ +
Sbjct: 531 DTIQDVAG-GYAKTMNVSSIMTK--YNSNGANSDIARLEGSRMVISSEANEGQRLDEGLV 587
Query: 579 KQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN 638
KQ+TGGD + AR YG + P S+ ++ N +R D+ WRR I+IPF+ +
Sbjct: 588 KQLTGGDRIVARQQYGKEFEYQP-SYKIWMATNHKPLIRGTDEGIWRRLILIPFEYQVPK 646
Query: 639 R--DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAW 696
D + KLE++ ++ W ++G + +GL IPE A ++ R+ D +
Sbjct: 647 DKIDRNLKYKLESE-SMGILNWIVEGAIMWQVEGLQ--IPERIKNASQKYREEMDVLSGF 703
Query: 697 IDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKI 756
++DCC+IG +S L SY + E Y +++ + +K F
Sbjct: 704 VNDCCEIGPGFTAKSGELYDSYKNWAEDANEY---KMTLTRFGKEMTKK-FH-------- 751
Query: 757 EKEWKSKRIIKGLKLK 772
+K+ + +G+++K
Sbjct: 752 KKKSMGVMVYEGIRIK 767
>gi|157325276|ref|YP_001468699.1| gp60 [Listeria phage B025]
gi|66733282|gb|AAY53099.1| gp60 [Listeria phage B025]
Length = 757
Score = 425 bits (1093), Expect = e-116, Method: Composition-based stats.
Identities = 113/476 (23%), Positives = 210/476 (44%), Gaps = 47/476 (9%)
Query: 304 ASRFSDAYNKAM-FSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSM 362
A RF D ++ + FS KG + Y D+K W K D + + + + + M
Sbjct: 318 AERFRDKFHDIVRFSYINKGFYYY--DSKVW-KYDN---------IGAVKTLVDDVIKDM 365
Query: 363 KEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLL 422
K SE +N++ F + R N + + K EA + + +
Sbjct: 366 K------SEFAYMDNESDAEKAFMKHLKATRSNKGKTNMLK------EAQHLMPVLPEEF 413
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEE 481
D FL Q+G ++L+ G+ + ++ TK + + + + + ++ F +E
Sbjct: 414 DRYKYFLNTQNGYINLQNGELINHDRQKMFTKISNIEYTDKIDAPLWQAFLNDIFAGDKE 473
Query: 482 VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQN 541
+++Y + VG +L G Q + G G +GKS +++I FG+ Y N + IM
Sbjct: 474 LINYMQKAVGYSLSGSTSEQVMFILFGNGRNGKSVFLDIINDIFGS-YATNIQPQTIMVK 532
Query: 542 RPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESP 601
+ ++ AN + RL G+R V +E NE ++ +KQ+TGGD +TAR Y + + +P
Sbjct: 533 Q--QSSNANSDIARLHGARFVTTTEPNEGVRLDEGLVKQLTGGDKVTARHLYKDEFEFTP 590
Query: 602 ASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAKKWF 659
F ++ N +R DD WRR ++PF I + D KL ++ T W
Sbjct: 591 -EFKIWMATNHKPIIRGRDDGIWRRLHLVPFTVKIPDEKVDKQLKYKLRSELT-GILNWA 648
Query: 660 LKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYS 719
++G + +GL +P+ A E + D A+I+DCCD+ E + + ++Y
Sbjct: 649 VEGFLKWQREGLG--MPKAVENASSEYKSEMDVITAFIEDCCDVREGEKVNAKKMYETYH 706
Query: 720 EYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAF 775
E+ ++ Y +S+ + + +K+ K+ + +G+ L +
Sbjct: 707 EWAKENGQY---LMSSTKFGKEI---------GMKFTKKKTKTANVYEGITLNDDY 750
>gi|227522313|ref|ZP_03952362.1| primase [Lactobacillus hilgardii ATCC 8290]
gi|227090520|gb|EEI25832.1| primase [Lactobacillus hilgardii ATCC 8290]
Length = 767
Score = 425 bits (1092), Expect = e-116, Method: Composition-based stats.
Identities = 154/801 (19%), Positives = 288/801 (35%), Gaps = 95/801 (11%)
Query: 6 WKEQAKQAIHNGFKLIPLRLGDKRPQRLG---KWEEQLLSSEKIDKLPACGFGFVCGVGE 62
W+ + N + IP D + W + + + + G F G
Sbjct: 23 WQPE-----RNKYTKIPHNALDGGAGKTNDPSSWTDYQTALKALKTYQMDGLAFYFANGY 77
Query: 63 QPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGI-----KKKK 117
DID ++ ++ ++ + K + ++ GI K
Sbjct: 78 ---VGLDIDHIGDELERYAAQDYQQNEVQDVLTM---TKSYVEISLSGTGIHAIFKGKIP 131
Query: 118 TTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLL-----SEEDVEY 172
+G++++ G++F +T Y + + E L+ E +V
Sbjct: 132 GDRRRKGNVEMYESGRFFALTG---RTVGPY--SDRINTPNSEVMKLIYKHYFGENNVVK 186
Query: 173 LFKFF----QEITVPLVKDKKSIIPSKT-----WTNNNNRQYTNREITAFLSCFGEEFYN 223
L +++V + + + + + YT++ F+
Sbjct: 187 LPNQAPIRPNDLSVDEIIKRAELSRTGKRFKMFMEGGWDGFYTSQSEADLAFSNDLAFWT 246
Query: 224 GSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWD-TFDFEEIGDTAK 282
G R +K +I R+ S YDE++ + + + I +T +
Sbjct: 247 G----------------RDFNKMDQIFRKSSLMRPKYDEKHGKTTYGVSLLNKSINETRE 290
Query: 283 KRSTFT-SLFYHHGKLIP----KGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKD 337
+ L ++ K + K L + D N F Y+ K+WY
Sbjct: 291 TFNPQQHPLHKYNLKFLQSKPKKKLPPRSWDDTGNADRFIDVFGNLVKYSYIDKSWYFY- 349
Query: 338 KNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVE 397
N Y K + + +MK + ++ + +F +
Sbjct: 350 -NGSYWEMDDQGKAAQFVDMTVDNMKNEKLHVAAGVDPEKAKVAWEKFLK---------K 399
Query: 398 ENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTG 457
S A A E + D L +G +DL +G + + T
Sbjct: 400 SRSHAAKQAMISEVQHRVPVLHGQFDQDKTLLNTVNGYIDLTSGILKDHDIKKMFSHQTS 459
Query: 458 TPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKST 516
+ + E+ + ++ F +E++ Y + VG + G K Q + G G +GKS
Sbjct: 460 VEYTDKIDCPEWDEFLNQIFAGDQELIHYIQKAVGYSATGSIKEQVMFILYGNGRNGKSI 519
Query: 517 LMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAA 576
++ I G Y + +A IM + AN + RL +R+V SE NE ++
Sbjct: 520 FIDTISDILGT-YAKSMQADSIMVRQNKSG--ANSDIARLESARLVTSSEPNEGVRLDEG 576
Query: 577 KIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI 636
+KQ+TGGD +TAR YG + P F ++ N +R DD WRR ++IPF I
Sbjct: 577 LVKQLTGGDKVTARYLYGKEFEFKP-QFKLWLATNHKPIIRGTDDGIWRRLMLIPFKVKI 635
Query: 637 AN--RDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQ 694
+ D + KL+ + ++ W ++G + +GL+ P +A + R+ D
Sbjct: 636 PDGQVDKNLKDKLKRE-SVGILNWIVEGSLLWQREGLNP--PISVTRASRQYREEMDVIS 692
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK-GFIGGIKR 753
++DDCC++ +N + L K Y + + Y +S + + +KQK F +K
Sbjct: 693 LFVDDCCEVSDNYRSPAGELFKKYQSWAKDNSEYS---MSKQKFSREIKQKFEFKKTMK- 748
Query: 754 EKIEKEWKSKRIIKGLKLKPA 774
R +GLK+K
Sbjct: 749 ---------GRFYEGLKIKTD 760
>gi|224501854|ref|ZP_03670161.1| hypothetical protein LmonFR_04967 [Listeria monocytogenes FSL
R2-561]
Length = 757
Score = 424 bits (1091), Expect = e-116, Method: Composition-based stats.
Identities = 153/769 (19%), Positives = 292/769 (37%), Gaps = 91/769 (11%)
Query: 33 LGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTP 92
W + + + ++K G GF +P + DID + +D L+G
Sbjct: 47 ERTWADFETALDSLEKYQFDGLGFYFK---KPYFGVDID----DIKDEIEDY---LYGNT 96
Query: 93 IVRIGQKPKILIPFR------MNKEGIKKKKTTEST--QGHLDILGCGQYFVAYNIHPKT 144
G+ + L + I K E +G++++ G++FV
Sbjct: 97 ENIAGEFIQTLSSYTEYSVSGTGIHIIAKGSFPEGGRRKGNIEMYPDGRFFVMTGQVIDN 156
Query: 145 KKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQ 204
++ + T + +V + + +P+ + SK
Sbjct: 157 YRQV--NEATTAIQYLHTKYIGTNEVRQINNLQSTVDLPVSDIIQRAERSKQGAQFKTLY 214
Query: 205 YTN-REITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEE 263
+ S F N ++A + K EI R + +D++
Sbjct: 215 DGLWDGLYPSQSEADLAFAN---------MLAFWTGCN-AEKMDEIFRSSGLYRTKWDQK 264
Query: 264 NFNYKWDTFDF-EEIGDTAKKRSTFTSL------------FYHHGKLIPKGLLASRFSDA 310
+ + I +T++ + L + A RF D
Sbjct: 265 RGAQLYGEMVINKAITNTSEIYQPGSELEGYSISIKNQNNTARKVYGLDDTGNAERFRDK 324
Query: 311 YNKAM-FSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDL 369
++ + FS KG + Y D+K W K D + + + + + MK
Sbjct: 325 FHDIVRFSYINKGFYYY--DSKVW-KYDN---------IGAVKTLVDDVIKDMK------ 366
Query: 370 SEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFL 429
SE +N++ F + R N + + K EA + + D D FL
Sbjct: 367 SEFAYMDNESDAEKAFMKHLKATRSNKGKTNMLK------EAQHLMPVLPDEFDRYKYFL 420
Query: 430 GEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTR 488
Q+G ++L+ G+ + ++ TK + + + + + + F +E++DY +
Sbjct: 421 NTQNGYINLQNGELINHDRQKMFTKISNIEYTDKIDAPLWQAFLKDIFAGDKELIDYIQK 480
Query: 489 CVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGK 548
VG +L G Q + G G +GKS +++I FG+ Y N + IM + ++
Sbjct: 481 AVGYSLSGSTSEQVMFILFGNGRNGKSVFLDIINDIFGS-YATNIQPQTIMVKQ--QSSN 537
Query: 549 ANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFI 608
AN + RL G+R V +E NE ++ +KQ+TGGD +TAR Y + + +P F ++
Sbjct: 538 ANSDIARLHGARFVTTTEPNEGVRLDEGLVKQLTGGDKVTARHLYKDEFEFTP-EFKIWM 596
Query: 609 VPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAKKWFLKGVKAY 666
N +R DD WRR ++PF I + D KL ++ T W ++G +
Sbjct: 597 ATNHKPIIRGRDDGIWRRLHLVPFTVKIPDEKVDKQLKYKLRSELT-GILNWAVEGFLKW 655
Query: 667 ISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQEL 726
+GL +P+ A E + D A+I+DCCD+ E + + ++Y E+ ++
Sbjct: 656 QKEGLG--MPKAVENASSEYKSEMDVITAFIEDCCDVREGEKVNAKKMYETYHEWAKENG 713
Query: 727 NYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAF 775
Y +S+ + + +K+ K+ + +G+ L +
Sbjct: 714 QY---LMSSTKFGKEI---------GMKFTKKKTKTANVYEGITLNDDY 750
>gi|16801649|ref|NP_471917.1| hypothetical protein lin2587 [Listeria innocua Clip11262]
gi|16415124|emb|CAC97814.1| lin2587 [Listeria innocua Clip11262]
Length = 757
Score = 423 bits (1088), Expect = e-116, Method: Composition-based stats.
Identities = 113/476 (23%), Positives = 210/476 (44%), Gaps = 47/476 (9%)
Query: 304 ASRFSDAYNKAM-FSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSM 362
A RF D ++ + FS KG + Y D+K W K D + + + + + M
Sbjct: 318 AERFRDKFHDIVRFSYINKGFYYY--DSKVW-KYDN---------IGAVKTLVDDVIKDM 365
Query: 363 KEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLL 422
K SE +N++ F + R N + + K EA + + +
Sbjct: 366 K------SEFAYMDNESDAEKAFMKHLKATRSNKGKTNMLK------EAQHLMPVLPEEF 413
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEE 481
D FL Q+G ++L+ G+ + ++ TK + + + + + ++ F +E
Sbjct: 414 DRYKYFLNTQNGYINLQNGELINHDRQKMFTKISNIEYTDKIDAPLWQAFLNDIFAGDKE 473
Query: 482 VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQN 541
+++Y + VG +L G Q + G G +GKS +++I FG+ Y N + IM
Sbjct: 474 LINYMQKAVGYSLSGSTSEQVMFILFGNGRNGKSVFLDIINDIFGS-YATNIQPQTIMVK 532
Query: 542 RPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESP 601
+ ++ AN + RL G+R V +E NE ++ +KQ+TGGD +TAR Y + + +P
Sbjct: 533 Q--QSSNANSDIARLHGARFVTTTEPNEGVRLDEGLVKQLTGGDKVTARHLYKDEFEFTP 590
Query: 602 ASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAKKWF 659
F ++ N +R DD WRR ++PF I + D KL ++ T W
Sbjct: 591 -EFKIWMATNHKPIIRGRDDGIWRRLHLVPFTVKIPDEKVDKQLKYKLRSELT-GILNWA 648
Query: 660 LKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYS 719
++G + +GL +P+ A E + D A+I+DCCD+ E + + ++Y
Sbjct: 649 VEGFLKWQKEGLG--MPKAVENASSEYKSEMDVITAFIEDCCDVREGEKVNAKKMYETYH 706
Query: 720 EYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAF 775
E+ ++ Y +S+ + + +K+ K+ + +G+ L +
Sbjct: 707 EWAKENGQY---LMSSTKFGKEI---------GMKFTKKKTKTANVYEGITLNDDY 750
>gi|229008352|ref|ZP_04165829.1| hypothetical protein bmyco0002_51610 [Bacillus mycoides Rock1-4]
gi|228752920|gb|EEM02472.1| hypothetical protein bmyco0002_51610 [Bacillus mycoides Rock1-4]
Length = 784
Score = 422 bits (1086), Expect = e-116, Method: Composition-based stats.
Identities = 153/748 (20%), Positives = 278/748 (37%), Gaps = 89/748 (11%)
Query: 51 ACGFGFVCGVGEQPLYAFDID--SKDEKTANTFKDTFEILHGTP-IVRIGQKPKILIPFR 107
G GFV + + DID DEKT + + L G+ I I +
Sbjct: 68 YDGIGFVFSRQDNYI-GIDIDKCVVDEKTNAFATEIIDTLDSYTEFSPSGKG--IHIIIK 124
Query: 108 MNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRF---KVEDTPL 164
N ++T+ L+I G++F + Y T +D+ +
Sbjct: 125 GNLPQSVLGTGRKNTKHGLEIYSYGRFFTFTGNRENSNDVYERTDELAEVFEKYFDDSDI 184
Query: 165 LSEEDVEYLFKFFQEITVPLVKDKKSIIP---SKTWTNNNNRQYTNREITAFLSCFGEEF 221
++ K +I+ + ++ N + + + C F
Sbjct: 185 QGRVNLAEFEKDEIKISNDALWERMFRSKNGDEIRSLYNGSLINNDHSASDLALCNHLAF 244
Query: 222 YNGS---------------HDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFN 266
+ G D+W + +ET G + IA S +T +
Sbjct: 245 WTGKSATRMDSMFCETSLMRDKWDVIHFRDTNETYGE---RTIATAISSTSTTILDNKQQ 301
Query: 267 YKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLY 326
++ +FDF F R ++ N + Y
Sbjct: 302 FEEFSFDFHNGDAKEVVEDKPKKKF--------------RLTELGNAERIAYEYGHVIKY 347
Query: 327 TADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFW 386
+D W+ D W L K I ++ D SE
Sbjct: 348 VSDIG-WFIWDGKR---WKLDTKKEIERITAKVLRSLYKSEDESEMK------------- 390
Query: 387 FNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP 446
+ R+N+ NS + + + D ++GI+DL+TG+ +
Sbjct: 391 WARMCERRNIRMNS-------IKDLMPLVPGEREDFDRHKYLFNVENGIVDLKTGKLQQH 443
Query: 447 TKELYITKSTGTPFVEGEPSQEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIH 505
+EL +TK T F E E+L+ + F+ +E+++Y R +G +L G Q +
Sbjct: 444 DRELGLTKITNIAFDENTKCPEWLNFLDQIFQGDQELVEYMQRLIGYSLTGEITEQIMVF 503
Query: 506 IRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIIS 565
+ G G +GKST +N IK G +Y A++ ++ + AN + RL+GSR V
Sbjct: 504 LIGGGSNGKSTFINTIKDLMG-EYGKQAKSDTFIKKKET---GANNDIARLVGSRFVSAI 559
Query: 566 ETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625
E+ E ++++ A +KQ+TGG+ + AR + P F F N ++ D+ WR
Sbjct: 560 ESEEGEQLSEAFVKQITGGEPVLARFLRQEYFEFIP-EFKVFFTTNHKPVIKGVDEGIWR 618
Query: 626 RYIVIPFD--KPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAK 683
R ++PF+ P RD +KL + W ++G + GL+ P + +KA
Sbjct: 619 RIRLVPFNLQLPKEKRDKKLPEKLSLE-MPGILNWAIEGCLKWQQSGLN--DPAIVMKAT 675
Query: 684 EEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLK 743
+ ++ D ++ +CC E++ E+ L + Y+ + + + ++ R L+
Sbjct: 676 GDYKEEMDILGPFMFECCFKREDVQIEAKELYEVYANWCFRNGEH---QLKNRAFYRILE 732
Query: 744 QKGFIGGIKREKIEKEWKSKRIIKGLKL 771
+G K E+ ++K IKG+ L
Sbjct: 733 SQGL-------KRERGNRNKYFIKGVTL 753
>gi|227534633|ref|ZP_03964682.1| primase [Lactobacillus paracasei subsp. paracasei ATCC 25302]
gi|227187734|gb|EEI67801.1| primase [Lactobacillus paracasei subsp. paracasei ATCC 25302]
Length = 765
Score = 422 bits (1086), Expect = e-116, Method: Composition-based stats.
Identities = 118/536 (22%), Positives = 214/536 (39%), Gaps = 40/536 (7%)
Query: 248 EIARRWSKQGSTYDEENFNYKWD-TFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASR 306
I R S +DE++ + + I D + + I
Sbjct: 253 SIFRHSSLMRPKWDEKHGKTTYGVSTLNRAINDVSDTYQPKHEKPKYKLGFITDTGKPKA 312
Query: 307 F-----SDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVS 361
F D N F Y+ KAWY N W L + ++++ +V+
Sbjct: 313 FPPRSWDDTGNADRFVDRYGDVARYSYIDKAWYIY---NGSFWELDKRGLLRTMIDEVVA 369
Query: 362 MKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDL 421
+ + D K K + T ++AK + E +T+D
Sbjct: 370 DLKKEKPKTPPDVDPEKAEKEWAKFCKT-------SRGNRAKRALED-EIQHRLPVTTDE 421
Query: 422 LDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESE 480
D+ + +G +DL G + + +K + + + E+ ++ F
Sbjct: 422 FDADQTLMNVDNGYIDLSDGTLHEHDIKKMFSKKSNVEYSDTVECPEWQAFLNQTFNGDN 481
Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540
E++DY + VG +L G + Q + G G +GKS M+ +K+ G+ Y +A IM
Sbjct: 482 ELIDYIQKAVGYSLTGSVEEQVMFILYGSGRNGKSVFMDTLKHIAGS-YSRTMQAKSIMV 540
Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600
+G AN + RL G+R+V SE NE ++ IK++TGG+ +TAR YG+ +
Sbjct: 541 --QQSSGGANSDIARLKGARLVSASEPNEGVRLDEGLIKELTGGESVTARFLYGSEFEFK 598
Query: 601 PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK--PIANRDASFAQKLETKYTLEAKKW 658
P F ++ N +R DD WRR ++IPF P+ D KLE + ++ W
Sbjct: 599 P-EFKLWLSTNHKPIIRGTDDGIWRRLMLIPFTHQVPVDQVDKRLTYKLERE-SIGILNW 656
Query: 659 FLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSY 718
+ G + +GL+ P+ A E R D + +I+DCC+ G + L ++Y
Sbjct: 657 AVDGALKWQREGLEP--PQSVKDASNEYRTEMDVLELFINDCCEKGPGYQAAAGQLYQTY 714
Query: 719 SEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPA 774
++ ++ Y ++ + +++K +K + G+++K
Sbjct: 715 VDWCDKSGEYKMRK---QKFGAEMQKK----------FDKHKRGSFFYLGIRIKSD 757
>gi|254933547|ref|ZP_05266906.1| primase [Listeria monocytogenes HPB2262]
gi|293585111|gb|EFF97143.1| primase [Listeria monocytogenes HPB2262]
Length = 757
Score = 422 bits (1084), Expect = e-115, Method: Composition-based stats.
Identities = 113/474 (23%), Positives = 208/474 (43%), Gaps = 42/474 (8%)
Query: 273 DFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAM-FSIYKKGHFLYTADTK 331
D E + KK++ + Y + A RF D ++ + FS KG + Y D+K
Sbjct: 291 DLEGYSISIKKQNNTARIVYG----LDDTGNAERFRDKFHDIVRFSYINKGFYYY--DSK 344
Query: 332 AWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDY 391
W K D + + + + + MK SE +N++ F +
Sbjct: 345 VW-KYDN---------VGAVKTLVDDVIKDMK------SEFAYMDNESDAEKAFMKHLKA 388
Query: 392 RRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELY 451
R N + + K EA + + + D FL Q+G ++L+ G+ + ++
Sbjct: 389 TRSNKGKTNMLK------EAQHLMPVLPEEFDRYKYFLNTQNGYINLQNGELINHDRQKM 442
Query: 452 ITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVG 510
TK + + + + + + ++ F +E+++Y + VG +L G Q + G G
Sbjct: 443 FTKISNIEYTDKIDAPLWQEFLNDIFAGDKELINYIQKSVGYSLSGSTSEQVMFILFGNG 502
Query: 511 GSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN 570
+GKS +++I FG+ Y N + IM + ++ AN + RL G+R V +E NE
Sbjct: 503 RNGKSVFLDIINDIFGS-YATNIQPQTIMVKQ--QSSNANSDIARLHGARFVTTTEPNEG 559
Query: 571 DEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVI 630
++ +KQ+TGGD +TAR Y + + +P F ++ N +R DD WRR ++
Sbjct: 560 VRLDEGLVKQLTGGDKVTARHLYKDEFEFTP-EFKIWMATNHKPIIRGRDDGIWRRLHLV 618
Query: 631 PFDKPIAN--RDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQ 688
PF I + D KL + T W ++G + +GL +P+ A E +
Sbjct: 619 PFTVKIPDTKVDKQLKYKLRRELT-GILNWAVEGFLKWQREGLG--MPKAVENASSEYKS 675
Query: 689 GTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNL 742
D A+I+DCCD+ E + + ++Y ++ ++ Y +S+ +
Sbjct: 676 EMDVITAFIEDCCDVREGEKVNAKKMYETYRDWAKENGQY---LMSSTKFGKEI 726
>gi|17488555|ref|NP_511033.1| primase [Listeria phage 2389]
gi|17402460|emb|CAC85608.1| primase [Listeria phage PSA]
gi|332311652|gb|EGJ24747.1| Primase [Listeria monocytogenes str. Scott A]
Length = 757
Score = 421 bits (1081), Expect = e-115, Method: Composition-based stats.
Identities = 113/476 (23%), Positives = 207/476 (43%), Gaps = 47/476 (9%)
Query: 304 ASRFSDAYNKAM-FSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSM 362
A RF D ++ + FS KG + Y D+K W K D + + + + + M
Sbjct: 318 AERFRDKFHDIVRFSYINKGFYYY--DSKVW-KYDN---------IGAVKTLVDDVIKDM 365
Query: 363 KEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLL 422
K SE +N++ F + R N + + K EA + + +
Sbjct: 366 K------SEFAYMDNESDAEKAFMKHLKATRSNKGKTNMLK------EAQHLMPVLPEEF 413
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEE 481
D FL Q+G ++L+ G+ + ++ TK + + + + + + + F +E
Sbjct: 414 DRYKYFLNTQNGYINLQNGELINHDRQKMFTKISNIEYTDKIDAPLWQEFLKDIFAGDKE 473
Query: 482 VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQN 541
+++Y + VG +L G Q + G G +GKS +++I FG+ Y N + IM
Sbjct: 474 LINYIQKAVGYSLSGSTSEQVMFILFGNGRNGKSVFLDIINDIFGS-YATNIQPQTIMVK 532
Query: 542 RPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESP 601
+ ++ AN + RL G+R V +E NE ++ +KQ+TGGD +TAR Y + +P
Sbjct: 533 Q--QSSNANSDIARLHGARFVTTTEPNEGVRLDEGLVKQLTGGDKVTARHLYKAEFEFTP 590
Query: 602 ASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAKKWF 659
F ++ N +R DD WRR ++PF I + D KL + T W
Sbjct: 591 -EFKIWMATNHKPIIRGRDDGIWRRLHLVPFTVKIPDEKVDKQLKYKLRRELT-GILNWA 648
Query: 660 LKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYS 719
++G + +GL +P A E + D A+I+DCCD+ E + + ++Y
Sbjct: 649 VEGFLKWQREGLG--MPGAVENASSEYKSEMDVITAFIEDCCDVREGEKVNAKKMYETYH 706
Query: 720 EYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAF 775
E+ ++ Y +S+ + + +K+ K+ + +G+ L +
Sbjct: 707 EWAKENGQY---LMSSTKFGKEI---------GMKFTKKKTKTANVYEGITLNDDY 750
>gi|283853499|ref|ZP_06370741.1| phage/plasmid primase, P4 family [Desulfovibrio sp. FW1012B]
gi|283571124|gb|EFC19142.1| phage/plasmid primase, P4 family [Desulfovibrio sp. FW1012B]
Length = 830
Score = 420 bits (1079), Expect = e-115, Method: Composition-based stats.
Identities = 126/708 (17%), Positives = 238/708 (33%), Gaps = 83/708 (11%)
Query: 117 KTTESTQGHLDILGCGQYFVAYNIHPK------TKKEYTWTTPPHRF-KVEDTPL-LSEE 168
T + Q D++ Q VA+ H + T PPH F P+ ++ +
Sbjct: 148 TTDDERQHGQDLVRRFQQAVAHVFHQQGFKVDTTSDLARVLRPPHTFNHKSGQPVMVTVD 207
Query: 169 DVEYLFKFFQEITVPLVKDKKSIIP---------SKTWTNNNNR--QYTNREIT------ 211
+ ++ + IP + QY E+
Sbjct: 208 HYDASLRYRVDYLDACCPPATPPIPTSVLPMPTTPSAGPSGGQELVQYPPVELQPIIDGC 267
Query: 212 AFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDT 271
A+L ++ EW + V G + + S Y + K
Sbjct: 268 AWLRHCRDDAATLPEPEWFAALSIVVRCVNGEQQAHAL----SSSYPGYSAVETDGKIRH 323
Query: 272 FDFEEIGDTAKKRSTFTSLFYHH-----------------GKLIPKGLLASRFSDAYNKA 314
A + + + Y I +G + +DA N
Sbjct: 324 AQAGGPRTCANIQGSLNAAAYCATCPHLSNGSSPITLGFLKTSIAQGAGFN-MTDAGNMD 382
Query: 315 MFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPE 374
+F+ Y + W+ D W + S+ + +
Sbjct: 383 IFAKANAADTRYVWVWQLWFLFDDVR---WQED----------KVGSIYQKAIATLRDLA 429
Query: 375 DNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDG 434
D K P+ + E + + ++ + ++ D+ L +G
Sbjct: 430 DQAKQLLPPKTAGYIIEHTLSSESRASLGNMLALAKSHPALAAVPEMFDADPWLLNLPNG 489
Query: 435 ILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMA 493
+DL+ +E +TK G + +L + ++ ++ + R G
Sbjct: 490 TMDLKQQTFRSHAREDMLTKVAGVAYDPTSTCPLWLAFLVTIMAGNQALIGFLQRFAGYT 549
Query: 494 LLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL 553
L+G Q I + G G +GKS + ++++ G +Y + A+ + + +
Sbjct: 550 LVGEVSEQSLILLYGTGANGKSVFLEILRFVLG-EYAMQADFTTFTATK---GQNVRNDI 605
Query: 554 IRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKH 613
RL+G+R V E+ + A IKQ+TGG+ + AR + + P FT ++ N
Sbjct: 606 ARLVGARFVTAVESEYGTPLAEAVIKQVTGGEPIVARFLFKEFFQFYP-QFTLWLASNHK 664
Query: 614 LFVRNPDDAWWRRYIVIPF--DKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGL 671
++ D WRR ++PF P +D+ KL+ + W L+G + + +GL
Sbjct: 665 PIIKGGDHGIWRRIKLVPFAVTIPPEQQDSDLPSKLKAEA-PGILNWMLEGSREWQRQGL 723
Query: 672 DVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRK 731
+ P + A E R D ++D+ C +G ++ L K+Y E+ E E +
Sbjct: 724 NP--PAEVMAAVSEYRGEMDLLAEFLDEKCVLGLGEKVKAKDLYKAYREFCEAEGEF--- 778
Query: 732 RISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVD 779
+ + L Q+GF K I GL LK + +
Sbjct: 779 VLGKKRFADLLLQRGF---------RKAKIGDMIWSGLGLKQSTAPAE 817
>gi|21234191|ref|NP_639791.1| putative DNA primase/helicase [Streptomyces coelicolor A3(2)]
gi|13620678|emb|CAC36717.1| putative DNA primase/helicase [Streptomyces coelicolor A3(2)]
Length = 506
Score = 415 bits (1066), Expect = e-113, Method: Composition-based stats.
Identities = 109/524 (20%), Positives = 192/524 (36%), Gaps = 45/524 (8%)
Query: 272 FDFEEIGDTAKKRSTFTSLFYHH------GKLIPKGLLASRFSDAYNKAMFSIYKKGHFL 325
FD E + + +S T L G+ GLL +D N +F F
Sbjct: 12 FDPEAVAAQIRAQSPATPLPAQATTERSVGEASANGLLPDTLTDRGNAKLFVKLYANDFR 71
Query: 326 YTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRF 385
+ + WY+ D W + D L + PR
Sbjct: 72 HVPNIG-WYRWDTTR---WQIDEDDTVLWAAGDLAETI---------------ATHDPRG 112
Query: 386 WFNT---DYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQ 442
F T R S + + + +D LD+ L G++DL TG
Sbjct: 113 LFTTTALHKHRTRAMSTSGMNAMLTQARSAPGMVLKADRLDADPYALCTPRGVVDLRTGL 172
Query: 443 KVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE----SEEVMDYFTRCVGMALLGGN 498
P + T + P +L ++ F ++++DY +G ++ G
Sbjct: 173 LRAPDPNKDFHSRSTTVGPQQMPVPRWLRFLTDTFGADAEGQQMIDYLHLLLGYSITGDV 232
Query: 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMG 558
AQ + G G +GKS L++++ G+ Y A +M L L G
Sbjct: 233 GAQILPFLWGTGKNGKSVLLDVMMKLLGD-YADAAPPGFLMAKPFE---GHPTDLAELHG 288
Query: 559 SRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRN 618
R+ + SE D+ + A++K +TGGD + AR + +S P + +++ N V
Sbjct: 289 RRVYVCSEIKPGDKFDEARVKLLTGGDRIKARRMRQDPFSFEP-THKLWLLGNHKPEVGT 347
Query: 619 PDDAWWRRYIVIPFDKPIAN--RDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIP 676
A+WRR +IPF++ + + + + A L + W + G + Y+ D+ P
Sbjct: 348 GGFAFWRRMRLIPFERVVPDDRKIDNLADLLVMEEGPGILAWLIDGARRYLGGDRDLTGP 407
Query: 677 EVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTR 736
E A + D + ++CC +G L E +L +Y+ + E IS+R
Sbjct: 408 ERVRIATTAYAETEDHTGRFYEECCRLGPELRAEQTALYAAYTAWCHNEGAQI---ISSR 464
Query: 737 TVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDD 780
++ + G+ K K ++ G+ L E +
Sbjct: 465 AFASRTRE---LVGLASPKEMKVSNQRKYYPGIGLLTVEERETN 505
>gi|281419026|ref|ZP_06250043.1| phage/plasmid primase, P4 family [Clostridium thermocellum JW20]
gi|281407175|gb|EFB37436.1| phage/plasmid primase, P4 family [Clostridium thermocellum JW20]
Length = 749
Score = 414 bits (1064), Expect = e-113, Method: Composition-based stats.
Identities = 143/799 (17%), Positives = 273/799 (34%), Gaps = 93/799 (11%)
Query: 21 IPLRLGDKRPQRLGKWEEQLLSSEKIDKLP-------ACGFGFVCGVG----EQPLYAFD 69
+P + + + + D AC G G+G + D
Sbjct: 14 LPQWVCHRNKIPFNPITGAPAKAGRPDTWARFEDVVKACENGSYEGIGFEFNNNGIVGID 73
Query: 70 ID---SKDEKTANTFKDTFEILHGTP-IVRIGQKPKILIPF-RMNKEGIKKKKTTESTQG 124
+D ++D + + +L G K L F + + +K +G
Sbjct: 74 LDKVIAEDGTVSTEAAEIVAMLGSYTEYSPSG---KGLHIFVKGDIPVDGRK------KG 124
Query: 125 HLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPL 184
+++ +YF T Y P +E+ + K+F +
Sbjct: 125 FIEMYKAKRYFTM------TGNVYGALNP--------INERTEQVKQIFNKYFSDSKSKN 170
Query: 185 VKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEW---------IPVVMA 235
+ T N + + F + +NG + + ++
Sbjct: 171 FVVNIVNNNAATEPNKDYLSIGLAKDAVFKA-----LWNGEYQSEKCTSESEADLALMGK 225
Query: 236 VHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHG 295
+ + G+ A S + D+++ + + A + T T+
Sbjct: 226 LLYWCSGNIDAAIEAFIKSPYVAGKDDKHTTKLGRSDYLQRTAVKAMQGLTSTAAGDDEQ 285
Query: 296 KLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASI 355
+ D N ++ +WY D +W L+ T +I
Sbjct: 286 YCKQQEF---TLDDMGNARRLVAMCGNSIRFSYIKNSWYCWDG---KVW---LEDETGAI 336
Query: 356 MNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSI- 414
+ E ++ + + + +K K + + S A A A +
Sbjct: 337 NRLADNTVEAMYTEAIKLTEQDKRDKLL---------KHAAKTRSIAGRKAMIEGAKHLE 387
Query: 415 -FSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLV 473
+ D L Q+G+LDL++ + + IT+ + + +LD +
Sbjct: 388 GIPVIPADFDKDVWLLNLQNGVLDLKSDKLYPHNPDYMITQISNASYNPSAKCPRWLDYL 447
Query: 474 SGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532
+ ++M Y + VG +L G + + G G +GK T + + G+ Y
Sbjct: 448 DKVTDGNADLMKYMQKAVGYSLTGITGEECLFILYGTGRNGKGTFAETLIHLLGS-YAKT 506
Query: 533 AEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLN 592
A+ +M ANP + RL G+R+V +E +N +N + IKQ+TGGD +TAR
Sbjct: 507 AQVDSLMLKNV-SGSGANPDIARLKGARVVNAAEPQKNSRLNESLIKQLTGGDMVTARFL 565
Query: 593 YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK--PIANRDASFAQKLETK 650
YG + P F +I N + D+ W R ++PF P RD L K
Sbjct: 566 YGKEFEYRP-EFKLWINTNYKPQISGNDEGIWSRVKLLPFTVYFPPEKRDPHLKDFLREK 624
Query: 651 YTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEE 710
W L+G+K + +GL ++PE A + R D Q ++DDC N
Sbjct: 625 EIDGILNWALEGLKLWQKEGL--EMPETMKLATTDYRCEMDIMQKFLDDCTKPKNNSSVG 682
Query: 711 SHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLK 770
+ L K Y+ + + Y +S ++ R ++ ++ + ++
Sbjct: 683 ALDLYKVYTHWCSENGEY---VLSNTKFGRDM---------NRYLNKRNCRTGVVYLNIE 730
Query: 771 LKPAFESVDDNSNIIDFKR 789
L +E+ + IDF +
Sbjct: 731 LTKPYENAKQDFEEIDFLK 749
>gi|184154942|ref|YP_001843282.1| phage primase [Lactobacillus fermentum IFO 3956]
gi|183226286|dbj|BAG26802.1| phage primase [Lactobacillus fermentum IFO 3956]
gi|299782971|gb|ADJ40969.1| Phage primase [Lactobacillus fermentum CECT 5716]
Length = 769
Score = 413 bits (1062), Expect = e-113, Method: Composition-based stats.
Identities = 155/800 (19%), Positives = 280/800 (35%), Gaps = 97/800 (12%)
Query: 6 WKEQAKQAIHNGFKLIPLRLGDKRPQRLG---KWEEQLLSSEKIDKLPACGFGFVCGVGE 62
WKE+ + IP+ P + W + + +D+ P G
Sbjct: 22 WKEE-----RGKYTKIPVNPWTGGPGKSNDSSTWADFDTAMRALDQYPDAD-GLAFYFAN 75
Query: 63 QPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTEST 122
+ DID + R+ + K + T +
Sbjct: 76 GYV-GLDID----------------HIAEDLERVQCGDTDP-----DNLVTKAHELTHGS 113
Query: 123 QGHLDILGCGQYFVAYNIHPKTKK---EYTWTTPPHRFKV-----EDTPLL-SEEDVEYL 173
+ + G G + + P ++ Y F + TP + S +D
Sbjct: 114 YMEVSMSGEGIHCIFKGKIPGDRRRKGNYEMYQSGRFFALTGNTLNATPEIKSLDDTAMR 173
Query: 174 FKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIP-- 231
+ + V + P+ T + + NR + F G + + P
Sbjct: 174 RLYDHYLHSDKVAEFPKKQPAITENTLSIDEIINRAERSTNGARFRAFMKGGWEPFYPSQ 233
Query: 232 --VVMAVHHETRGSSKGKE------IARRWSKQGSTYDEENFNYKWD-TFDFEEIGDTAK 282
MA ++ G++ I R+ S YDE++ + + I +T+
Sbjct: 234 SEADMAFANDLAFW-CGRDFKAMDSIFRQSSLYRKKYDEKHGKTTYGIALLNKAINETSN 292
Query: 283 KRSTFTSL-------FYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYK 335
L F + + PK + D N F +F Y+ K WY
Sbjct: 293 VFHPHQPLNVNYDMSFLNKDRDKPKT--PRTWDDMGNALRFIDMYGDNFKYSYIDKMWYL 350
Query: 336 KDKNNVYIWSLTLDKITAS-IMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQ 394
N W + + + + +M + ++ ++++ K +F R
Sbjct: 351 Y---NGSYWQIDQSGMVEKCADSVIKNMDNEKLNIWPGMDESDATEKWVKFKAKCRSNRS 407
Query: 395 NVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITK 454
E + D+ L + G +DL +G + ++ +
Sbjct: 408 KKS---------MLDEVKHHVPVLHSEFDNDLMLLNTESGYVDLNSGLLKEHDRDKMFSH 458
Query: 455 STGTPFVEGEPSQEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSG 513
T + + + E+ + F EEV+ Y + VG + G K Q + + G G +G
Sbjct: 459 QTAAEYTDTIDAPEWDKFLHQIFNNDEEVIHYIQKAVGYSATGSIKEQVMLLLYGNGRNG 518
Query: 514 KSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI 573
KS +N I G+ Y IM + N + RL G+R+VI SE NE +
Sbjct: 519 KSVFINTIADILGS-YAETMNVESIMVKH---SSGVNSDIARLEGARLVISSEANEGSRL 574
Query: 574 NAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFD 633
+ +KQMTGGD M AR Y + + +P F ++ N +R DD WRR ++IPF
Sbjct: 575 DEGLVKQMTGGDKMVARHLYASEFEFTP-QFKLWMATNHKPIIRGTDDGIWRRIMLIPFL 633
Query: 634 KPIANR--DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTD 691
I D KL+ + + W ++G + ++GL+ PE+ KA +E RQ D
Sbjct: 634 VQIPKDKVDKELKYKLQREAS-GILNWIVQGAMMWQAEGLEP--PEIIKKASDEYRQEMD 690
Query: 692 TYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGI 751
+ +I + C+ G+ + L Y + ++ + ++ F +
Sbjct: 691 AIEFFISEKCERGDGYMAPAGELYDVYKRWSDESGEH------------QFNKQKFGSEM 738
Query: 752 KREKIEKEWKSKRIIKGLKL 771
K + K K R +GLK+
Sbjct: 739 KAKFNYKHTKHGRYYEGLKI 758
>gi|315122923|ref|YP_004063412.1| P4 family phage/plasmid primase [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313496325|gb|ADR52924.1| P4 family phage/plasmid primase [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 356
Score = 412 bits (1059), Expect = e-112, Method: Composition-based stats.
Identities = 241/356 (67%), Positives = 289/356 (81%)
Query: 108 MNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSE 167
M K GIKKK+T +S QGHLDILG GQYFVAYNIHPKTK+EYTWTTPP FK E+ PLLSE
Sbjct: 1 MAKAGIKKKQTPKSQQGHLDILGGGQYFVAYNIHPKTKEEYTWTTPPDAFKAEELPLLSE 60
Query: 168 EDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHD 227
EDVE+LF+FF+E T P+VK KK I K NR+YTNREITAFLSCFGEEF NG+HD
Sbjct: 61 EDVEHLFEFFKESTTPVVKAKKEIKSPKEGNTKGNRRYTNREITAFLSCFGEEFTNGTHD 120
Query: 228 EWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTF 287
EWIPVVMA+HHET+GS +GKE+ARRWSK+GS+YDEENFNYKW TFD EE GD+ KKRSTF
Sbjct: 121 EWIPVVMAIHHETQGSHEGKELARRWSKRGSSYDEENFNYKWSTFDCEEEGDSEKKRSTF 180
Query: 288 TSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLT 347
S+FYHH KLIP G+L RFSDAYNKAMFS++K G+FLY +DTKAWYKKDK N YIW +T
Sbjct: 181 ASIFYHHRKLIPDGILEERFSDAYNKAMFSVFKSGYFLYASDTKAWYKKDKTNRYIWRIT 240
Query: 348 LDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQ 407
DKI IM FL+SMK+D FDL EE E+ + K+PR + Y ++N E S++KSTA
Sbjct: 241 DDKIAGYIMEFLISMKKDAFDLCEEIENKDGTKKNPRALYLKAYAKRNACEQSRSKSTAN 300
Query: 408 SLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEG 463
++EA S F I+S++ D++ R++GE+DGILD+ETGQ++ P +ELYITKSTGTPFVEG
Sbjct: 301 AIEAKSPFHISSEIFDANLRYIGERDGILDMETGQQITPKEELYITKSTGTPFVEG 356
>gi|312984184|ref|ZP_07791530.1| putative nucleoside triphosphatase, D5 family [Lactobacillus
crispatus CTV-05]
gi|310894403|gb|EFQ43479.1| putative nucleoside triphosphatase, D5 family [Lactobacillus
crispatus CTV-05]
Length = 774
Score = 411 bits (1057), Expect = e-112, Method: Composition-based stats.
Identities = 160/789 (20%), Positives = 279/789 (35%), Gaps = 90/789 (11%)
Query: 18 FKLIPLRL---GDKRPQRLGKWEEQLLSSEKIDKLP-ACGFGFVCGVGEQPLYAFDIDSK 73
+ IP G + W + + + K P A G F G D+D
Sbjct: 34 YTKIPKNPYNFGAGKSNDQRTWSDFDTALRALHKYPQADGLAFYFANG---FVGLDVDHI 90
Query: 74 DEKTAN---------TFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQG 124
D + + F+ L I Q K L K G
Sbjct: 91 DSDLEDYQEGDTDPNNLVNHFKSLTHNSYTEISQSGKGLHVI-----FKGKIPGKHRRHG 145
Query: 125 HLDILGCGQYFVAYNI-----------HPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYL 173
+ ++ G++F P K Y + + P ++++ L
Sbjct: 146 NYEMYESGRFFALTGNTIGKPIIKSLDKPAMTKLYEFCFGKDKVTPLH-PENTDDEAIDL 204
Query: 174 FKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVV 233
+ I + + Y ++ F+ G +
Sbjct: 205 P-ISEIIKRAEDSPSSGKRFTMFMQGGWEQFYNSQSEADMAFANDLAFWCG------RDI 257
Query: 234 MAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWD------TFDFEEIGDTAKKRSTF 287
+ R SS ++ R +TY + + T + E G+ +
Sbjct: 258 HKMDQIFRSSSLIRDKWDR-QDGATTYGQRTLQKAINETPNVYTPNSENTGNYIFSFNEK 316
Query: 288 TSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLT 347
H+ + +A RF D Y K +FLY+ K WY N Y
Sbjct: 317 KQKPKHYTQ--DDMGMAQRFIDRYGK---------NFLYSYIDKEWYIY--NGSYWSPDI 363
Query: 348 LDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQ 407
I + + + ++ +D + D + K + N+ + N E + KAK
Sbjct: 364 KGYIETASDHVIKNLAKDRPAI-----DPSLPEKDQKKIINSWNKFVNHERSHKAKVDL- 417
Query: 408 SLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ 467
E +T + D L G +DL G+ + T TG + +
Sbjct: 418 IKELQHRLPVTHSMWDQEDMLLNTPSGYVDLTNGKLHPHDIKKMFTAETGAEYSDTIDCP 477
Query: 468 EFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFG 526
+ + F+ EEV+ Y + +G + G K Q G G +GKS +++ ++ G
Sbjct: 478 NWCKFLKQIFQNDEEVIHYVQKAIGYSFTGSTKEQVMFIPYGNGRNGKSVMLDTVQDIAG 537
Query: 527 NQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDC 586
Y S IM AN + RL GSR+VI SE NE ++ +KQ+TGGD
Sbjct: 538 -GYAKTMNVSSIMTKYNNNG--ANSDIARLEGSRMVISSEANEGQRLDEGLVKQLTGGDR 594
Query: 587 MTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFA 644
+ AR YG + P S+ ++ N +R D+ WRR I+IPFD + D +
Sbjct: 595 IVARQMYGKEFEYQP-SYKIWMATNHKPLIRGTDEGIWRRLILIPFDYQVLKDKIDRNLK 653
Query: 645 QKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIG 704
KLET+ ++ W ++G + +GL + PE KA ++ R+ D ++ DCC++G
Sbjct: 654 YKLETE-SMGILNWIVEGAIMWQVEGL--EAPEQIKKASQKYREEMDVLSGFVADCCELG 710
Query: 705 ENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSK- 763
+S L SY + Y +++ + +K ++ K
Sbjct: 711 LGFTAKSGELYDSYKNWAADANEY---KMTLTRFGKEMTKK----------FHRKVKDGY 757
Query: 764 RIIKGLKLK 772
++ +G+++K
Sbjct: 758 KVYEGIRIK 766
>gi|9633023|ref|NP_050131.1| putative DNA-polymerase or DNA-primase [Lactobacillus phage phiadh]
gi|5730280|emb|CAB52501.1| putative DNA-polymerase or DNA-primase [Lactobacillus phage phiadh]
Length = 771
Score = 410 bits (1054), Expect = e-112, Method: Composition-based stats.
Identities = 113/532 (21%), Positives = 218/532 (40%), Gaps = 35/532 (6%)
Query: 248 EIARRWSKQGSTYDEENFNYKW-----DTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGL 302
I R S + +DE+ + + + + + + K +++ + + K
Sbjct: 257 TIFRNSSLMRAKWDEKRGATTYGIATLNKANNDTVNTFSTKDDEALNVYGFNQESSQKET 316
Query: 303 LASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSM 362
+ D F +Y+ + WY N W + + +++
Sbjct: 317 PPRSWDDMGMAQRFLDMFPHSIIYSMVDETWYVY---NGSYWKQDNQGLIEKAADKVINN 373
Query: 363 KEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLL 422
++ + E D + + +++ E S++ E + + +
Sbjct: 374 LKNEKHVIPEDVDEDD--------YKKAWKKFEKRERSRSSKVNMVNEIKHLVPVLHNQW 425
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE-SEE 481
D L G +DL G T+ TG F E ++ ++ F+ +E
Sbjct: 426 DQEHMLLNTPSGYIDLTNGTLHNHKYNKMFTQETGVDFSENVDCPLWIKFLNQTFQNDQE 485
Query: 482 VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQN 541
++ + + +G +L G N Q+ + G G +GKS L+N++KY FG+ Y A+ IMQ
Sbjct: 486 LIHFVQKIIGYSLTGSNAEQKMFILYGNGRNGKSVLLNIVKYIFGS-YAKTMNATTIMQK 544
Query: 542 RPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESP 601
R + A + RL G+R+V+ SE NE D ++ + +KQMTGGD + AR YG + P
Sbjct: 545 RIGSSQGATSDIARLEGARLVVSSEANEGDRLDESLVKQMTGGDTLVARYQYGKDFEFDP 604
Query: 602 ASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAKKWF 659
F F+ N + D+ WRR ++IPF + D KL+ + ++ KW
Sbjct: 605 V-FKLFMATNHKPKIYGTDEGIWRRLVIIPFTHTVKKENVDKKLEDKLKAE-SMGILKWA 662
Query: 660 LKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYS 719
++G + S+GL+ P+V A E R+ D +A+ID+CC ++ + + +Y
Sbjct: 663 IEGAMMWQSEGLNP--PDVIQNAGNEYRKEMDVIEAFIDECCVTNDSYKVKLPTYLDAYK 720
Query: 720 EYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771
+ + N++ ++ + ++ F K + G+ L
Sbjct: 721 NWANETNNWEG--MNNTKFGKEITKR-FE--------RKRLNTGNYYLGIDL 761
>gi|223044345|ref|ZP_03614380.1| primase [Staphylococcus capitis SK14]
gi|222442313|gb|EEE48423.1| primase [Staphylococcus capitis SK14]
Length = 768
Score = 410 bits (1053), Expect = e-112, Method: Composition-based stats.
Identities = 119/489 (24%), Positives = 208/489 (42%), Gaps = 42/489 (8%)
Query: 289 SLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTL 348
+ A R D + + Y ++++ D+K W D + +
Sbjct: 308 PVKKDKRYSYDDTGNAERLKDRFGSFIRYNYTSKNWMF-YDSKRWRIDDAGKM---KGLV 363
Query: 349 DKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQS 408
DK+ A + N +S D +D E + ++ K R + K
Sbjct: 364 DKVIAGLKNEKISGSYDGYDTEEIKKFRTRHWKDSR---------------NHNKKENML 408
Query: 409 LEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE 468
E + I + + DS Q+G +DL TGQ ++ K + TK + + + +
Sbjct: 409 KECQHLLPIHNHVFDSDFTLFNTQNGYIDLNTGQLLEHDKNKFFTKISKCEYTDNADCPK 468
Query: 469 FLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527
+ D ++ F ++E++ + RCVG +L G Q + G G +GKS ++++ FGN
Sbjct: 469 WEDFLNDIFLGNQELIKFIQRCVGYSLSGYTSEQVLFVLLGNGRNGKSVFLDIMNEVFGN 528
Query: 528 QYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCM 587
Y N IM N A+P + +L G+R V +E NE D + IKQ+TGGD +
Sbjct: 529 -YATNIRPQAIMANNQK--SDASPEIAKLDGARFVTTTEPNEGDRFDEGLIKQLTGGDKV 585
Query: 588 TARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQ 645
TAR Y N + P ++ N +VR D+ WRR+++IPFDK I D
Sbjct: 586 TARKLYENEFEFVP-QLKLWMATNHKPYVRGTDEGIWRRFVIIPFDKQIPLKEVDRDLTN 644
Query: 646 KLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE 705
KL+ K KW ++G + GL P+ ++E R D+ + ++ D C++GE
Sbjct: 645 KLK-KELPAIMKWCVEGYLEWQKIGL--SEPQSVKAQRDEYRTEMDSTELFLRDVCEMGE 701
Query: 706 NLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRI 765
+ + L K+Y + Y R+S+R +++K + S
Sbjct: 702 TKFIRTSHLYKAYDIWARDNHQY---RMSSRKFRNEMEKK----------FSVKKSSHEY 748
Query: 766 IKGLKLKPA 774
+G++++
Sbjct: 749 YQGVQVEDE 757
>gi|107022006|ref|YP_620333.1| Phage-plasmid primase P4-like [Burkholderia cenocepacia AU 1054]
gi|116688950|ref|YP_834573.1| P4 family phage/plasmid primase [Burkholderia cenocepacia HI2424]
gi|105892195|gb|ABF75360.1| Phage-plasmid primase P4-like protein [Burkholderia cenocepacia AU
1054]
gi|116647039|gb|ABK07680.1| phage/plasmid primase, P4 family [Burkholderia cenocepacia HI2424]
Length = 746
Score = 410 bits (1053), Expect = e-112, Method: Composition-based stats.
Identities = 144/770 (18%), Positives = 255/770 (33%), Gaps = 93/770 (12%)
Query: 13 AIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKL----PACGFGFVCGVGEQPLYAF 68
GF P+ +KRP +++ L E+ P+ + G L
Sbjct: 12 LATKGFACFPIVPNEKRPLTPNGFKDASLDPEQHRAWAEQFPSSNIAYATGAPSGRLIVI 71
Query: 69 DIDSKDEK-TANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLD 127
D+D K+ K A + + P R P I K + + +D
Sbjct: 72 DVDVKNNKSGAKSLVALQKKHGPLPATRTVITPSGGIHLLFTYPEGMKIQCKVGFRDGID 131
Query: 128 ILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKD 187
I G Y A Y W + P +L + F + +
Sbjct: 132 IRADGGYCGAPP-STIEGNPYEWVDE--TVPIAPAP-------AWLLEEFAKQGT-TRRK 180
Query: 188 KKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGK 247
+KS + N N+ + H + G
Sbjct: 181 RKSRKTAIVPAGNRNQS------------------------------VMLHAFSLLNGGL 210
Query: 248 EIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRF 307
+ R ++ Y+ N + ++ + S + A R
Sbjct: 211 D-YERLEEELLEYNAACCNPPLSESEVSQVAVNVIRSHQENS---GSNQHTTDLGNARRM 266
Query: 308 SDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVF 367
SD + + Y TK W KK ++ V + + L + E++
Sbjct: 267 SDLFGDEL---------RYVPQTKQWLKKRESGV-WQRVDELHVLLLARQLLPLIYEELS 316
Query: 368 DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSR 427
LS P + E N+ K + + ++++ LD
Sbjct: 317 RLS------------PGNRVEMFEHAKYTESNTGLKYAVELFRSEPGIAVSAGDLDQGEW 364
Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE-SEEVMDYF 486
L ++G++DL TG + +L+IT + + + + + E+++Y
Sbjct: 365 MLPVRNGLIDLRTGSFMPMDPKLHITYTAAVDYDPDATCPLWEAFLLEIMNRNVELVEYV 424
Query: 487 TRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP--- 543
R +G L G G +GKST +N+++ FG+ A ++
Sbjct: 425 RRAIGYTLTTLTSEHALFFAFGSGANGKSTFLNVLRALFGDLGA-QANGDMLLDKNGGAA 483
Query: 544 PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPAS 603
+ A+ + RL G R+V +SE E + +K TGG+ +TARL YGN + P
Sbjct: 484 MSSNAASSEVARLAGKRLVAMSEVEEGRHFSEKTVKWYTGGEDITARLLYGNAFEFKPR- 542
Query: 604 FTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLK 661
F ++ N ++ D WRR +IPF I RD +KL + W L
Sbjct: 543 FKLWLAGNYKPTIKGNDHGIWRRMKLIPFTVTIPPEKRDPDLERKLRDEL-PGILNWALV 601
Query: 662 GVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEY 721
G K + G ++ P+ E R D ++W+ + + K + +
Sbjct: 602 GCKQWRENGNKLNEPKAITNEVSEYRGEMDVVESWLSEFTRNDPDGEIHFGDTYKFFKAW 661
Query: 722 REQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771
E + N+ S + + L KG+ + K R+ KGL+L
Sbjct: 662 SESQYNFS---YSGKRFGMILADKGY---------KPASKPHRVYKGLRL 699
>gi|167920131|ref|ZP_02507222.1| phage/plasmid primase, P4 family protein [Burkholderia pseudomallei
BCC215]
Length = 761
Score = 407 bits (1045), Expect = e-111, Method: Composition-based stats.
Identities = 133/771 (17%), Positives = 251/771 (32%), Gaps = 93/771 (12%)
Query: 13 AIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKL----PACGFGFVCGVGEQPLYAF 68
+ G +P+RL DK P +++ +K P + G +
Sbjct: 17 LVAEGLAPLPIRLNDKVPATQHGFKDANQDPDKHRAWANECPDYNVAYATGPASGYVLVV 76
Query: 69 DIDSK--DEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHL 126
D+D K D + + P R P K + + +
Sbjct: 77 DVDVKNGDATGLKSISRLEKEHGPLPPTRKVFTPSGGYHLIYRYPENLKVPSRINFLPRV 136
Query: 127 DILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVK 186
D+ G Y +A + Y + P + P +L + +
Sbjct: 137 DVKAEGGYCLAPP-SIINDEPYFYDEPVL--PISRAP-------AWLLELLCSTQGTKPR 186
Query: 187 DKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKG 246
+KS N N + + +
Sbjct: 187 KRKSAKSKSATIGNRNESVAFEGFSLLNAGLNPDLLEE---------------------- 224
Query: 247 KEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASR 306
+ Y+ N + + +I +S ++ + SR
Sbjct: 225 ---------ELLEYNATNCDPPLSESEVSQIAANV-----ASSHQKNNDSV-------SR 263
Query: 307 FSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDV 366
+D N S Y ++ K W +K + W + + ++ M D
Sbjct: 264 ATDLGNAKRMSELYSDTLRYVSEMKRWLEKSPSGA--WRFIDELRVLLLAREIIPMIHDE 321
Query: 367 FDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSS 426
+P + E N K + + ++++ LD
Sbjct: 322 I-----------RRLNPGNRRELMDHAKYSESNKALKDAVELFRSEPGIAVSASNLDEGE 370
Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDY 485
++G++DL+TG+ + L+IT++ G F + + + E+++Y
Sbjct: 371 WMFPAKNGLVDLQTGKFMPMDPALHITQTAGVNFDPDATCPRWEAFLLEIMNGNVELVEY 430
Query: 486 FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545
R +G L G G +GKST +NL++ FG+ A ++ +
Sbjct: 431 LRRAIGYTLTCQTSEHALFFAFGSGANGKSTFLNLLRALFGDLGA-QANGDMLLDKNGGQ 489
Query: 546 AGKAN---PSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602
A +N + RL+G R+V +SE E + +K TGG+ + AR+ Y N +S +P
Sbjct: 490 AMSSNASSSEVARLVGKRLVAMSEVEEGRHFSEKTVKWYTGGEDIVARMLYQNAFSFTPR 549
Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFL 660
F ++ N ++ D WRR +IPF I RD +KL + W L
Sbjct: 550 -FKLWLAGNYKPTIKGNDHGIWRRMKLIPFTVTIPPEKRDPDLERKLRDEL-PGILNWAL 607
Query: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSE 720
G + + G + P + E R D ++W+ + + K +
Sbjct: 608 VGCQQWRDNGYKLKEPAIITNEVSEYRGEMDVVESWLSEFTRDDPDGEIHFGDAYKFFKA 667
Query: 721 YREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771
+ E E N+ S + + + L+ KG+ + + R+ +GL L
Sbjct: 668 WSEAEYNFS---YSRKRLGMILQDKGY---------KPVARPHRVYQGLTL 706
>gi|327134279|dbj|BAC76547.2| putative DNA primase/helicase [Streptomyces rochei]
Length = 500
Score = 406 bits (1043), Expect = e-111, Method: Composition-based stats.
Identities = 101/511 (19%), Positives = 190/511 (37%), Gaps = 33/511 (6%)
Query: 274 FEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAW 333
+ + G+ GLL SD N +F + + + W
Sbjct: 17 PRTLARPVTAVRSVGGDGLQAGEATADGLLPDTLSDRGNAKLFVSFYADDYRHVP-GLGW 75
Query: 334 YKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR 393
++ D W + D L + S +P + + R R
Sbjct: 76 FRWDGTR---WQVDEDDTVLWAAGDLAELLA-----STDPRGVHSAAALQR-------HR 120
Query: 394 QNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYIT 453
+ S + ++ + + LLD+ L GI+DL TGQ +
Sbjct: 121 RRALSTSGMNAMLTQAKSAPGMVLNAALLDADPYALCTPAGIVDLRTGQTRTSHPDRDFH 180
Query: 454 KSTGTPFVEGEPSQEFLDLVSGYFE----SEEVMDYFTRCVGMALLGGNKAQRFIHIRGV 509
+ E P+ ++ ++ F +E++ + +G ++ G AQ + G
Sbjct: 181 SCSTAVAPEAVPTPRWVRFLTDTFGEGAEGQEMIGFLQLLLGYSITGDVGAQVMPFLFGS 240
Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569
G +GKS L++++ G+ Y A +M L L G R+V+ SE
Sbjct: 241 GKNGKSVLLDVLMKLLGD-YADAAPPGFLMARPYE---GHPTDLAELHGRRVVVCSEVKP 296
Query: 570 NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIV 629
D + A++K +TGGD + AR + +S P + +++ N V A+WRR +
Sbjct: 297 GDRFDEARVKLLTGGDRIKARRMRQDFFSFRP-THKLWLLGNHRPEVGTGGFAFWRRLRL 355
Query: 630 IPFDKPIAN--RDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEER 687
IPF++ + + + + A L T+ W + G + Y+S D+ PE A
Sbjct: 356 IPFERVVPDDRKVDNLADILVTEEGPGILNWLIVGARRYLSGEKDLTGPERVRIATTAYA 415
Query: 688 QGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGF 747
+ D ++ + C I L E L +Y + + E + +S+R +++
Sbjct: 416 ETEDHTGRFLGESCTIEPGLRAEQTQLYAAYRAWCQNE---EAPAVSSRAFAARVRE--- 469
Query: 748 IGGIKREKIEKEWKSKRIIKGLKLKPAFESV 778
+ G+ K ++ G+ L A E+
Sbjct: 470 LVGLASPKEMILSNQRKYYPGIGLVAAEETA 500
>gi|30795061|ref|NP_851511.1| putative DNA primase/helicase [Streptomyces rochei]
Length = 471
Score = 406 bits (1042), Expect = e-110, Method: Composition-based stats.
Identities = 101/492 (20%), Positives = 188/492 (38%), Gaps = 33/492 (6%)
Query: 293 HHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKIT 352
G+ GLL SD N +F + + + W++ D W + D
Sbjct: 7 QAGEATADGLLPDTLSDRGNAKLFVSFYADDYRHVP-GLGWFRWDGTR---WQVDEDDTV 62
Query: 353 ASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAG 412
L + S +P + + R R+ S + ++
Sbjct: 63 LWAAGDLAELLA-----STDPRGVHSAAALQR-------HRRRALSTSGMNAMLTQAKSA 110
Query: 413 SIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDL 472
+ + LLD+ L GI+DL TGQ + + E P+ ++
Sbjct: 111 PGMVLNAALLDADPYALCTPAGIVDLRTGQTRTSHPDRDFHSCSTAVAPEAVPTPRWVRF 170
Query: 473 VSGYFE----SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528
++ F +E++ + +G ++ G AQ + G G +GKS L++++ G+
Sbjct: 171 LTDTFGEGAEGQEMIGFLQLLLGYSITGDVGAQVMPFLFGSGKNGKSVLLDVLMKLLGD- 229
Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588
Y A +M L L G R+V+ SE D + A++K +TGGD +
Sbjct: 230 YADAAPPGFLMARPYE---GHPTDLAELHGRRVVVCSEVKPGDRFDEARVKLLTGGDRIK 286
Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDASFAQK 646
AR + +S P + +++ N V A+WRR +IPF++ + + + + A
Sbjct: 287 ARRMRQDFFSFRP-THKLWLLGNHRPEVGTGGFAFWRRLRLIPFERVVPDDRKVDNLADI 345
Query: 647 LETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGEN 706
L T+ W + G + Y+S D+ PE A + D ++ + C I
Sbjct: 346 LVTEEGPGILNWLIVGARRYLSGEKDLTGPERVRIATTAYAETEDHTGRFLGESCTIEPG 405
Query: 707 LWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRII 766
L E L +Y + + E + +S+R +++ + G+ K ++
Sbjct: 406 LRAEQTQLYAAYRAWCQNE---EAPAVSSRAFAARVRE---LVGLASPKEMILSNQRKYY 459
Query: 767 KGLKLKPAFESV 778
G+ L A E+
Sbjct: 460 PGIGLVAAEETA 471
>gi|327439461|dbj|BAK15826.1| predicted ATPase [Solibacillus silvestris StLB046]
Length = 796
Score = 404 bits (1038), Expect = e-110, Method: Composition-based stats.
Identities = 106/492 (21%), Positives = 191/492 (38%), Gaps = 51/492 (10%)
Query: 306 RFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKED 365
R ++ N + + ++ W D W I N ++
Sbjct: 344 RLNELGNAERIAYEYGHVIRFVSEIG-WMLWDGKR---WKYDNKLQIERIANKVL----- 394
Query: 366 VFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSS 425
+ K+ + ++N+ NS + + + D
Sbjct: 395 --------RELEKSDDEMEVRWARSCGKRNIRMNS-------IKDLMPLVPAEREEFDKH 439
Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMD 484
+GILDL TG+ + ++L ++K F + +L+ + F EE++D
Sbjct: 440 KFLFNCSNGILDLRTGKLQQHDRDLRLSKLANVEFDDNAKCPTWLNFLQQIFKGDEELID 499
Query: 485 YFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544
Y R +G ++ G Q + G G +GKST +N+IK G+ Y + ++ ++ +
Sbjct: 500 YMQRLIGYSMTGDISEQGMYFLVGGGSNGKSTFINIIKAMMGD-YGLQTKSDTFIKKKN- 557
Query: 545 EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604
AN + RL+GSR V E+ E +++ + +K +TGG+ + AR + +P F
Sbjct: 558 --DGANNDIARLVGSRFVSAVESEEGEKLQESLVKTITGGEPILARFLRQEFFEFTP-EF 614
Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKG 662
F N + D+ WRR +IPF +A RD +KL + W ++G
Sbjct: 615 KVFFTTNHKPIIGGVDEGIWRRVKIIPFTLNLAPHQRDKKLEEKLTLE-MSGILNWAIEG 673
Query: 663 VKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE---NLWEESHSLAKSYS 719
+ GL P+V + A ++ D ++++ C + N E+ L YS
Sbjct: 674 CLKWQQSGLK--EPKVVVDATGNYKEEMDILGPFLEERCYMNPKDTNTKIEAKELYNIYS 731
Query: 720 EYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL---KPAFE 776
+ + IS R+ L+ KGF K +K + G+ + KP E
Sbjct: 732 NWCYAAGE---RSISNRSFYRMLETKGF-------GKSKGAGNKMYLVGITISERKPVTE 781
Query: 777 SVDDNSNIIDFK 788
V +N FK
Sbjct: 782 PVIENEKTGGFK 793
>gi|120599012|ref|YP_963586.1| P4 family phage/plasmid primase [Shewanella sp. W3-18-1]
gi|120559105|gb|ABM25032.1| phage / plasmid primase, P4 family [Shewanella sp. W3-18-1]
Length = 906
Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats.
Identities = 113/481 (23%), Positives = 207/481 (43%), Gaps = 25/481 (5%)
Query: 305 SRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKE 364
+D N + G +Y + Y D+ W DK A +
Sbjct: 427 DTLNDVGNADRLAEVADGKLVYVPELNCLYMFDEQ---CWRPIGDKELALARCIGEGIIA 483
Query: 365 DVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDS 424
+ E+P +K + + RQ++ K + ++ ++ I++ D+
Sbjct: 484 QANRMLEDPATLKDKTKRQQADKLLAFGRQSLNR-KKLADMLEIFKSSNL--ISAKAFDA 540
Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY-FESEEVM 483
+G +G+LDL TG+ + KE+YI++ + + +L + E
Sbjct: 541 DKMLMGINNGVLDLATGKLLAANKEMYISRYSDINYKPDVTCPRWLQFIDEITCGDVEYA 600
Query: 484 DYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP 543
+ R VG L G Q + G G +GKST MN+I+ G+ Y + +SD++
Sbjct: 601 KFLQRMVGYILTGRTDEQVLFFLYGHGCNGKSTFMNIIQRLMGSYY--HQISSDVLLQSN 658
Query: 544 PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPAS 603
NPSL +L GSR+V+ +E E ++ +K MTG D + AR Y E
Sbjct: 659 NSGKGPNPSLAKLNGSRLVVANELPEGSRMDENLVKSMTGSDVIVARQLYAKVELEYIPM 718
Query: 604 FTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAKKWFLK 661
F +V N +R+ WRR I++PF+ + + D KL + + W L+
Sbjct: 719 FKLIMVGNHKPVIRDTSLGMWRRMILLPFNASFSQQQMDPQLMDKLYAELS-GILNWALE 777
Query: 662 GVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEY 721
GV+ ++ G+ IP E R +D ++++C + G+ ++ + L ++ ++
Sbjct: 778 GVQMWLKDGIKASIPNSIKSGIAEYRHESDLLAMFLEECTNKGDFVYTD--ELYDAFRKW 835
Query: 722 REQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDN 781
E++ ++ +++ +T L +KGF G SK +IKG+KLK AF+ + +
Sbjct: 836 AERDGDW---KMTRNIMTKRLVEKGFEKG--------RHNSKAMIKGIKLKSAFDDIPEQ 884
Query: 782 S 782
Sbjct: 885 I 885
>gi|320013130|gb|ADW07978.1| phage/plasmid primase, P4 family [Streptomyces flavogriseus ATCC
33331]
Length = 509
Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats.
Identities = 97/491 (19%), Positives = 186/491 (37%), Gaps = 39/491 (7%)
Query: 295 GKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITAS 354
G+ GLL +D N +F + + WY+ D W + D
Sbjct: 44 GEATQHGLLPDTLTDRGNAKLFVKLYANDYRHVP-GMGWYRWDTTR---WQIDEDDTVVW 99
Query: 355 IMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTD---YRRQNVEENSKAKSTAQSLEA 411
L + S PR + T R+ + + ++
Sbjct: 100 AAGDLA---------------ESIASSDPRGLYTTQALQQHRRRALSTTGMNAMLTQAKS 144
Query: 412 GSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLD 471
+ + LD+ + L DGI+DL TG P + + P+ +
Sbjct: 145 APGMVLNAARLDADAYALCTPDGIVDLRTGLLKTPDPNKDFHSRSTSVGPRPSPTPRWNR 204
Query: 472 LVSGYFESE----EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527
++ F + E++++ +G ++ G Q + G G +GKS L++++ G+
Sbjct: 205 FLTDTFGDDAEGTEMIEFLQLLLGYSVTGDVGGQVLPFLFGSGKNGKSVLLDVLMKLLGD 264
Query: 528 QYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCM 587
Y A +M L L G R+++ SE D+ + A++K +TGGD +
Sbjct: 265 -YADAAPPGFLMARPYE---GHPTDLAELHGRRVIVCSEVKHGDKFDEARVKLLTGGDRI 320
Query: 588 TARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDASFAQ 645
AR + +S P + +++ N V A+WRR +IPF + +++ + + A
Sbjct: 321 KARRMRQDFFSFQP-THKLWLLGNHRPEVGTGGFAFWRRMRLIPFTRVVSDDRKIDNLAD 379
Query: 646 KLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE 705
L T+ W + G + Y++ D+ PE A + D + ++CC +G
Sbjct: 380 ILVTEEGPGILGWLIDGARRYLAGDKDLTGPERVRIATTAYAETEDHTGRFFEECCTLGP 439
Query: 706 NLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRI 765
L E L +Y + ++E +++R ++ + G+ K ++
Sbjct: 440 ELRAEQTGLYTAYRTWCQEEGA---PAMTSRAFAARARE---LAGLASPKEMILSNQRKY 493
Query: 766 IKGLKLKPAFE 776
G+ L P E
Sbjct: 494 YPGIGLLPEQE 504
>gi|228963014|ref|ZP_04124222.1| hypothetical protein bthur0005_62410 [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|228796668|gb|EEM44069.1| hypothetical protein bthur0005_62410 [Bacillus thuringiensis
serovar pakistani str. T13001]
Length = 791
Score = 402 bits (1033), Expect = e-109, Method: Composition-based stats.
Identities = 134/757 (17%), Positives = 259/757 (34%), Gaps = 101/757 (13%)
Query: 51 ACGFGFVCGVGEQPLYAFDIDS-----KDEKTANTFKDTFEILHGTPIVRIGQKPKILIP 105
G GFV + + DID K A DT + G I I
Sbjct: 68 YDGIGFVFSRQDNYI-GIDIDKCAVAGKTNTFATEIIDTLDSYTEFSPSEKG----IHII 122
Query: 106 FRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPP---HRFKVEDT 162
+ + ++T+ L+I G++F + Y T +D+
Sbjct: 123 IKGSLPQSVLGTGRKNTKHGLEIYSYGRFFTFTGNRENSNDVYDRTDELAEIFEIYFDDS 182
Query: 163 PLLSEEDVEYLFKFFQEITVPLVKDKKSIIPS-----KTWTNNNNRQYTNREITAFLSCF 217
++ K +++ + ++ + + N + + ++
Sbjct: 183 DRQGRVNLAEFEKDEIKVSNDALWERMFRSKNGDEIRSLFNGNLVNDDHSASDLSLMNHL 242
Query: 218 GEEFYNGS---------------HDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDE 262
F+ G D+W + + +ET G + IA S ST +
Sbjct: 243 --AFWTGKSATRMDSMFRESGLMRDKWDVIHFSDTNETYGE---RTIATAISSTSSTILD 297
Query: 263 ENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKG 322
++ +FDF ++GD + F ++ N +
Sbjct: 298 YKQQFEEFSFDFRDVGDNEDEARPVNRKFM--------------LTEMGNAERIATEYGH 343
Query: 323 HFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKS 382
+ + WY D + W + I S+ K+
Sbjct: 344 VIRFV-NGSGWYTWDGKH---WKEDRSRAVERI-------------TSKTLRKLLKSEDE 386
Query: 383 PRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQ 442
+ ++ + NS + + D+ L ++G++DL+TG+
Sbjct: 387 REVKWGRQCEKRAIRMNSIKDMI-------PLVPAQREDFDTHQYLLNVENGVIDLKTGK 439
Query: 443 KVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESE------EVMDYFTRCVGMALLG 496
++ +TK F +GE + + F+ E++++ + +G +L
Sbjct: 440 LSPHDRDFMLTKMVNIEFKQGEDCPNWKLFLDSIFKDVEGNTDYELIEFIQKSIGYSLTS 499
Query: 497 GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRL 556
Q + G G +GKST +N IK GN Y + ++ + N + RL
Sbjct: 500 DISEQVMFFLYGSGRNGKSTFINTIKSLLGN-YAKQTNSDTFIKKKHDSG--VNNDIARL 556
Query: 557 MGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV 616
G+R V E+ E +++ A +KQ+TGG+ ++AR + +PA F F N +
Sbjct: 557 AGARFVSAVESEEGQQLSEALVKQITGGEPISARFLRQEFFEFTPA-FKVFFTTNHKPII 615
Query: 617 RNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD 674
+ D+ WRR +IPF I D +KL + W ++G + + L
Sbjct: 616 KGMDEGIWRRVRMIPFIVTIPKDKVDRKLPEKLSME-MSGILNWAIEGCLKWQRESLG-- 672
Query: 675 IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIS 734
P+ A ++ D + ++ D C + E+ L YS + +E +
Sbjct: 673 EPKAIQDATNHYKEEMDILEPFLLDKCFLHPQAKMEAKELYSEYSRWCNEEGEIILR--- 729
Query: 735 TRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771
RT L+ K + ++ K+K + G+ L
Sbjct: 730 NRTFYRLLENKNIVK-------KRGAKNKVFLYGVGL 759
>gi|255020312|ref|ZP_05292380.1| hypothetical protein ACA_2130 [Acidithiobacillus caldus ATCC 51756]
gi|254970232|gb|EET27726.1| hypothetical protein ACA_2130 [Acidithiobacillus caldus ATCC 51756]
Length = 766
Score = 401 bits (1031), Expect = e-109, Method: Composition-based stats.
Identities = 107/526 (20%), Positives = 175/526 (33%), Gaps = 59/526 (11%)
Query: 262 EENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYN--------- 312
++ WD D G + +DA +
Sbjct: 272 PDDKPEGWDAADAVAEGFDVAGFVVNGPRMTIQPEQEDA---PEHTTDAAHGGASVLGSE 328
Query: 313 ---KAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDL 369
F+ + + Y A W D W ++ + D
Sbjct: 329 DALALSFTRRYQRDWRYVAAWGKWLMWDGQR---WRAEETLAATDLIRHVCRHAAVRADN 385
Query: 370 SEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFL 429
+ + +S + + T D D+ L
Sbjct: 386 ARLA--------------------TKLAASSTVGGVERLARTDRRHAATPDEWDADPWLL 425
Query: 430 GEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTR 488
Q G++DL TG+ + +TK V G ++ + E+ Y R
Sbjct: 426 NTQGGVVDLRTGRMRPHDRADRMTKIAPATLVPGSACPTWIRFLEQVTGGDAELQAYLQR 485
Query: 489 CVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGK 548
VG L G + G G +GKS +N + G+ Y NA M+ R +
Sbjct: 486 MVGYCLTGSTAEHALFFLYGTGANGKSVFVNTLATILGD-YAANAPMDTFMEAR---GDR 541
Query: 549 ANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFI 608
L L G+R+V +ET + N AKIK++TGGD +TAR + ++ P F I
Sbjct: 542 HPTDLAGLRGARLVTATETEQGRRWNEAKIKEITGGDRITARFMRQDFFTYVP-QFKLVI 600
Query: 609 VPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAY 666
N +RN D+A RR +IPF I RD + QKL + W ++G A+
Sbjct: 601 AGNHKPAIRNVDEAMRRRLHLIPFTVTIPPERRDKTLQQKLLAER-DGILAWAVQGCLAW 659
Query: 667 ISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQEL 726
+GL P+ L A +E + D W+++ C N L + ++ E
Sbjct: 660 QREGLRP--PQSVLDATDEYFEAEDALGRWLEERCVRDPNAKSLVAELFSDWKQWAEAAG 717
Query: 727 NYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLK 772
+ S + + L +G + R +G+ LK
Sbjct: 718 EFVG---SQKRFSDLLLTRGLEKW-------RNGMGLRGFRGVGLK 753
>gi|239638085|ref|ZP_04679044.1| phage primase [Staphylococcus warneri L37603]
gi|239596368|gb|EEQ78906.1| phage primase [Staphylococcus warneri L37603]
Length = 769
Score = 401 bits (1030), Expect = e-109, Method: Composition-based stats.
Identities = 117/546 (21%), Positives = 209/546 (38%), Gaps = 55/546 (10%)
Query: 250 ARRWSKQGSTYDEEN-FNYKWD---------------TFDFEEIGDTAKKRSTFTSLFYH 293
AR +S+ S + + N + KWD + T K+++ L Y
Sbjct: 245 ARDYSQMDSIFRQSNLYRDKWDEKRKNSTYGEQTLFKAINEANNIYTPKQQTEDNPLRYA 304
Query: 294 -----HGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTL 348
+ K + D N F + Y+ +Y D W +
Sbjct: 305 LSKLFDKQEETKEFPIRSYDDTGNADRFIDRYGNLYKYSYIANKFYIYDGMK---WKIDD 361
Query: 349 DKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQS 408
+++ ++ +D + ++ + R +F Y++ +K +
Sbjct: 362 KGSIRKLIDEMIESIKD----EKIIHGDDVTEEEAREFFQKYYKKTR-GTQAKKNIMNEL 416
Query: 409 LEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE 468
+ T D D + +G +DL + + K ++ T T + E
Sbjct: 417 M---HRRPATPDDFDRDDMLINVANGYIDLTSRELYKHDINKMFSQITNTDYTEKMQPAV 473
Query: 469 FLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527
+LD ++ F +EV+ Y + +G +L G + Q + G G +GKS + +I G+
Sbjct: 474 WLDFLNDIFAGDQEVIRYIQKALGYSLTGSTREQIMFILFGKGRNGKSIFVEVISEILGD 533
Query: 528 QYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCM 587
Y N +A +M + N + RL +R V SE NE + IKQ+TGGD +
Sbjct: 534 -YSNNMQAKSLMVKKN---DNVNTDIARLSKARFVTSSEPNEGFRFDEGLIKQLTGGDKV 589
Query: 588 TARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQ 645
TAR Y + +P F ++ N +R DD WRR ++IPFD I D
Sbjct: 590 TARFLYAEEFEYTP-KFKIWVSTNHKPIIRGTDDGIWRRLVLIPFDVQIPEEKVDKDLKY 648
Query: 646 KLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE 705
KL + W +G ++ +GL +PE +A + R D + +I+D C +
Sbjct: 649 KLLREA-PAILNWMAEGAYMWMQEGL--AMPEKLKEASKAYRNEMDVIEQFIEDECKRVD 705
Query: 706 NLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRI 765
++H L + Y ++ Y ++S + +K+K F K S
Sbjct: 706 GGKVKAHELYELYKKWANDNGAY---KMSNKDFGQKMKEK-FE--------YKRITSGMF 753
Query: 766 IKGLKL 771
GL++
Sbjct: 754 YFGLEI 759
>gi|302344019|ref|YP_003808548.1| phage/plasmid primase, P4 family [Desulfarculus baarsii DSM 2075]
gi|301640632|gb|ADK85954.1| phage/plasmid primase, P4 family [Desulfarculus baarsii DSM 2075]
Length = 749
Score = 401 bits (1029), Expect = e-109, Method: Composition-based stats.
Identities = 107/472 (22%), Positives = 196/472 (41%), Gaps = 39/472 (8%)
Query: 313 KAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEE 372
+F+ K Y +T AW+ ++ W + ++ + L D +
Sbjct: 315 ALLFAREHKDDLRYCHETGAWFVWTGSH---WRVEKTRLAFAWARKLCRKAAAGMDSKKV 371
Query: 373 PEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQ 432
+ + + A + + + F++TS++ D+ LG
Sbjct: 372 A--------------------ATLSKAATAGAVERFAQTDRAFAVTSEIWDADLHLLGTP 411
Query: 433 DGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEV-MDYFTRCVG 491
DG++DL TG +E Y+TK + + + + + + + + G
Sbjct: 412 DGVVDLRTGTLRPARREDYLTKLAAVAPARSSDAPLWRRFLDEATQGDAMLQRFMQQVAG 471
Query: 492 MALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANP 551
AL G I G GG+GKS +N + G+ Y A + + +
Sbjct: 472 YALTGDISEHALFFIYGPGGNGKSVFLNTLTNILGD-YAATAAMDTFTAS---QGDRHPT 527
Query: 552 SLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPN 611
L L G+R+V +SET E ++IKQ+TGGD ++AR + ++ +P F IV N
Sbjct: 528 DLAMLRGARLVSVSETEEGRPWAESRIKQLTGGDKISARFMRQDFFTYTP-QFKLLIVGN 586
Query: 612 KHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGL 671
+RN D+A RR+ +IPF A+ D KL +Y +W ++G + GL
Sbjct: 587 HKPVLRNVDEAARRRFNIIPFVHKPASPDKRLEDKLRAEY-PAILRWMIEGCLDWRENGL 645
Query: 672 DVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRK 731
PE +A D + WI++CC++G+ WE + L +S+ Y ++ +
Sbjct: 646 LR--PESVKEATAAYFDEQDLFGQWIEECCEVGKASWETTARLFESWKNYADRNGEHAG- 702
Query: 732 RISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDNSN 783
ST+ + NL ++ FI ++ ++RI +G+ +K + D +
Sbjct: 703 --STKAFSANLAKREFIA----DRRTVFGSTQRIFRGIAVKVEHDGRLDGLD 748
>gi|57233571|ref|YP_180824.1| phage/plasmid DNA primase, putative [Dehalococcoides ethenogenes
195]
gi|57224019|gb|AAW39076.1| phage/plasmid DNA primase, putative [Dehalococcoides ethenogenes
195]
Length = 757
Score = 399 bits (1026), Expect = e-109, Method: Composition-based stats.
Identities = 114/573 (19%), Positives = 207/573 (36%), Gaps = 60/573 (10%)
Query: 240 TRGSSKGKEIARRWSKQ-GSTYDEENFNYKWDTFDFEEIGDTAKKRST-FTSLFYHHGKL 297
S + + + +E W + + +++ + Y+
Sbjct: 210 YGDSDAAFQCFLEEAAKCSPPLEEAELMTIWHS--AQRFFSKVQQQDGYVSPEVYND--- 264
Query: 298 IPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTL--------- 348
P + FSD + + Y G Y+ T + + W +
Sbjct: 265 -PTSYMPGDFSDVGQAEVLAKYFSGELRYSPAT----HFIRYTSHYWQESEPGAQAVAHE 319
Query: 349 ----------DKITASIMNFLVSMKEDVFDLSEEPE-----DNNKNSKSPRFWFNTDYRR 393
+ +++ + +D+ + + + + + + F Y+
Sbjct: 320 LTRRQLEEATKDLQSAMRLLTENGAQDILENASKAKAESLMNETQLEAYRAFLSAKAYQS 379
Query: 394 QNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQ--KVKPTKELY 451
+ TA E+ + I+ LD+ L DL G + + + +
Sbjct: 380 FAIRRRDSKNITATLKESRPMLEISPRDLDADCFLLCTPAATYDLRKGMTGAREHSPDDF 439
Query: 452 ITKSTGT-PFVEGEP-SQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGV 509
ITK T P +GE Q L L+ + ++E++DY G+A +G + I G
Sbjct: 440 ITKMTSVSPSSKGEQIWQNSLGLI--FCGNQELIDYVQMICGLAAIGKVYVEALIIAYGG 497
Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569
G +GKST N I G Y N A + P + + G R++I +E E
Sbjct: 498 GRNGKSTFWNAISRVLG-LYSGNISADTLTVGCRRNI---KPEMAEVKGKRLLIAAEIQE 553
Query: 570 NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIV 629
+N + +KQ+ D + A Y + +S +P T + N V DD WRR +V
Sbjct: 554 GARLNDSTVKQLCSTDDVFAEKKYKDPFSFTPC-HTLVLYTNHLPKVSASDDGIWRRLVV 612
Query: 630 IPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEER 687
IPFD I + ++ + L W ++G K I+ + +P +A E R
Sbjct: 613 IPFDAKIEGSSDIKNYGEYLYQNAGESILAWVIEGAKKVIALDYKIPVPVCVQQAITEYR 672
Query: 688 QGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGF 747
D + ++++ C++ + E S SL ++Y Y Y R ST L+ G+
Sbjct: 673 SQNDWFGHFLEEKCELDASYRESSSSLYRAYRNYCVDTNEYIR---STTDFYSALEAAGY 729
Query: 748 IGGIKREKIEKEWKSKRIIKGLKLKPAFESVDD 780
K+KR GL+LK +D
Sbjct: 730 --------GRINVKNKRFFAGLRLKIDDGDFED 754
>gi|120601927|ref|YP_966327.1| hypothetical protein Dvul_0879 [Desulfovibrio vulgaris DP4]
gi|120562156|gb|ABM27900.1| plasmid/phage primase, P4 family [Desulfovibrio vulgaris DP4]
Length = 738
Score = 399 bits (1024), Expect = e-108, Method: Composition-based stats.
Identities = 109/465 (23%), Positives = 187/465 (40%), Gaps = 43/465 (9%)
Query: 313 KAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEE 372
F+ K Y +T AWY W + ++ ++ L + +
Sbjct: 309 ALAFANRYKDDLRYCHETGAWYIW---RGTHWEMERTRLAFDMVRNLCRETAAALESKKL 365
Query: 373 PEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQ 432
+ + + S + ++ F++TS + D+ LG
Sbjct: 366 A--------------------STLSKAATVGSVERLAQSDRHFAVTSGIWDADHYLLGTP 405
Query: 433 DGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESE-EVMDYFTRCVG 491
DG++DL +G + +E +ITK+T + + + + + + + + G
Sbjct: 406 DGVVDLRSGVLLPARREDFITKTTTVAPAASSEAPLWSRFLHEATQGDVALQRFMRQIAG 465
Query: 492 MALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANP 551
AL G I G GG+GKS +N I G Y A + ++ +
Sbjct: 466 YALTGDISEHALFFIYGPGGNGKSVFLNTINNILG-AYTATAAMDTFVASK---GDRHPT 521
Query: 552 SLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPN 611
L L G+R+V +SET E ++IKQ+TGGD +TAR + ++ +P F IV N
Sbjct: 522 DLAMLRGARLVSVSETEEGRAWAESRIKQLTGGDQVTARFMRQDFFTFTP-QFKLLIVGN 580
Query: 612 KHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGL 671
++N DDA RR+ +IPF A D +KL +Y +W ++G + GL
Sbjct: 581 HKPVLKNVDDAARRRFNIIPFVHKPATPDKQLEEKLRAEY-PAILRWMIEGCLDWQENGL 639
Query: 672 DVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRK 731
PE +A D + WI++CC++G E + +L S+ Y E+ +
Sbjct: 640 VR--PESVREATASYFDEQDLFGQWIEECCEVGAMYSETTTALFDSWKSYAERNGEHPG- 696
Query: 732 RISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFE 776
S + + NL ++GF G S R G+K K +
Sbjct: 697 --SAKAFSANLCKRGFTSG--------RTMSSRYFSGIKKKKEQD 731
>gi|313898154|ref|ZP_07831693.1| phage/plasmid primase, P4 family, C-terminal domain protein
[Clostridium sp. HGF2]
gi|312957182|gb|EFR38811.1| phage/plasmid primase, P4 family, C-terminal domain protein
[Clostridium sp. HGF2]
Length = 757
Score = 398 bits (1022), Expect = e-108, Method: Composition-based stats.
Identities = 118/571 (20%), Positives = 204/571 (35%), Gaps = 56/571 (9%)
Query: 240 TRGSSKGKEIARRWSKQ-GSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLI 298
K + S + + W + +++ Y+
Sbjct: 210 YGDCDKAYQTFIEESTKCTPPLEASELATIWHSAQ-RFYARLSQQDGYIAPEVYND---- 264
Query: 299 PKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASI--- 355
P +SD + + Y G Y+ T + + + W + A
Sbjct: 265 PSCYKPGDYSDVGQAEVLAKYFSGELRYSPAT----HFIRYSDHYWQESEPGAQAVAHEL 320
Query: 356 -MNFLVSMKEDVFD--------------------LSEEPEDNNKNSKSPRFWFNTDYRRQ 394
L D+ D +E+ + ++ F Y++
Sbjct: 321 TRRQLKEADNDMLDALDKLKNSGAQSLLDSMSKSKAEQLMNEDQMEAYQEFISAKAYQQF 380
Query: 395 NVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQK--VKPTKELYI 452
++ T+ E+ + I+ LD+ L + DL G + E +I
Sbjct: 381 AIKRRDSKNITSTLKESRPMLEISPRDLDADCFALCTPEATYDLRKGMAGAREHRPEDFI 440
Query: 453 TKSTGTPFVEGEPSQEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGG 511
TK T + Q +LD + F+ ++E++DY G+A +G + I G G
Sbjct: 441 TKITSVSPN-YKGQQIWLDCLDLIFQSNQELIDYVQMICGLAAIGKVYVEALIIAYGDGR 499
Query: 512 SGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEND 571
+GKST N I G Y N A + P + + G R++I +E E
Sbjct: 500 NGKSTFWNAISRVLG-LYSGNISADTLTVGCRRNI---KPEMAEVKGKRLLIAAEMQEGA 555
Query: 572 EINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIP 631
+N + +KQ+ D + A Y + +S P T + N V DD WRR IVIP
Sbjct: 556 RLNDSTVKQLCSTDDVFAEKKYKDPFSFKPC-HTLVLYTNHLPRVSASDDGIWRRLIVIP 614
Query: 632 FDKPI--ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQG 689
F+ I +N ++++ L W ++G K I + +PE A +E R
Sbjct: 615 FNAKITGSNDIKNYSEYLYDNAGGSILAWVIEGAKKVIESDYQIPVPECVQNAIDEYRSQ 674
Query: 690 TDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIG 749
D + ++ D C++ ++ E S SL ++Y Y Y R ST L++ GF
Sbjct: 675 NDWFGHFLSDKCEVDQSYKESSSSLYQAYRNYSLDCNEYVR---STADFYFALEKAGFER 731
Query: 750 GIKREKIEKEWKSKRIIKGLKLKPAFESVDD 780
K R KGL+L+ + +D
Sbjct: 732 VTMSRK--------RYFKGLRLREDTGADED 754
>gi|323693308|ref|ZP_08107526.1| phage DNA polymerase [Clostridium symbiosum WAL-14673]
gi|323502791|gb|EGB18635.1| phage DNA polymerase [Clostridium symbiosum WAL-14673]
Length = 757
Score = 398 bits (1022), Expect = e-108, Method: Composition-based stats.
Identities = 117/571 (20%), Positives = 202/571 (35%), Gaps = 56/571 (9%)
Query: 240 TRGSSKGKEIARRWSKQG-STYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLI 298
S K + S + D W + +++ Y+
Sbjct: 210 YGDSDKAYQAFIDESAKCVPPLDASELATIWHSAQ-RFYARLSQQDGYIAPEVYND---- 264
Query: 299 PKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNF 358
P FSD + + Y G Y+ T + + + W + A
Sbjct: 265 PSCYKPGDFSDVGQAEVLAKYFSGELRYSPAT----HFIRYSDHYWQESEPGAQAVAHEL 320
Query: 359 LVSMKEDVF------------------------DLSEEPEDNNKNSKSPRFWFNTDYRRQ 394
++ +E+ + N+ Y++
Sbjct: 321 TRRQLKEASNDMLEALDKLKNSGAQSLLDSMSKSKAEQVMNENQLQAYQELLAAKAYQQF 380
Query: 395 NVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQK--VKPTKELYI 452
V+ T+ E+ + I+ LD+ + + DL G + E +I
Sbjct: 381 AVKRRDSKNITSTLKESRPMLEISPRDLDADCFAMCTPEATYDLRKGMAGAREHLPEDFI 440
Query: 453 TKSTGTPFVEGEPSQEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGG 511
TK T + Q +LD + F+ ++E++DY G+A +G + I G G
Sbjct: 441 TKITSVSPN-YKGQQIWLDCLDLIFQGNQELIDYVQMICGLAAIGKVYVEALIIAYGDGR 499
Query: 512 SGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEND 571
+GKST N I G Y N A + P + + G R++I +E E
Sbjct: 500 NGKSTFWNAISRVLG-LYSGNISADTLTVGCRRNI---KPEMAEVKGKRLLIAAEMQEGA 555
Query: 572 EINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIP 631
+N + +KQ+ D + A Y + +S P T + N V DD WRR IVIP
Sbjct: 556 RLNDSTVKQLCSTDDVFAEKKYKDPFSFKPC-HTLVLYTNHLPRVSASDDGIWRRLIVIP 614
Query: 632 FDKPIAN--RDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQG 689
F+ I + ++++ L W ++G K I + +P++ KA +E R
Sbjct: 615 FNAKITDSSDIKNYSEYLYDNAGGSILAWVIEGAKKVIESDYQIPVPDLVQKAIDEYRSQ 674
Query: 690 TDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIG 749
D + ++ D C++ + E S SL ++Y Y Y R ST L++ GF
Sbjct: 675 NDWFGHFLADKCEVDPSYKESSSSLYQAYRNYSLDCNEYVR---STADFYFALEKAGFE- 730
Query: 750 GIKREKIEKEWKSKRIIKGLKLKPAFESVDD 780
KR KGL+L+ + +D
Sbjct: 731 -------RITVSRKRYFKGLRLRDDTGADED 754
>gi|30795066|ref|NP_851516.1| putative DNA primase/helicase [Streptomyces rochei]
gi|30698439|dbj|BAC76552.1| putative DNA primase/helicase [Streptomyces rochei]
Length = 485
Score = 397 bits (1021), Expect = e-108, Method: Composition-based stats.
Identities = 110/499 (22%), Positives = 196/499 (39%), Gaps = 39/499 (7%)
Query: 295 GKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITAS 354
+ P GLL +D N +F+ F + + WY D+ Y W T +
Sbjct: 12 RRGAPTGLLPDELTDRGNAKLFARLYSDRFRHV-EGLGWYSWDQ---YRWKRTGGE--KG 65
Query: 355 IMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSI 414
M M E + P + + S R R+ + + K+ Q +A
Sbjct: 66 AMWAAGDMAEQM------PRTDPHGTFSNREL---AAHRRRTQSTAGVKALLQQAQAAPG 116
Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPTK-ELYITKSTGTPFVEGEPSQEFLDLV 473
S+ D +D L G++DL TG+ KP +++T E P + +
Sbjct: 117 LSLDPDSMDGDIYALCTPGGVVDLRTGELRKPDPLADMHSRATTV-GPEDMPLPRWHSFL 175
Query: 474 SGYFESE----EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529
F + E + + +G ++ G AQ + G G +GKS L+ ++ G+ Y
Sbjct: 176 RDTFGDDAKGRETIAFLHLLLGYSVTGDVGAQILPFLYGSGANGKSVLLEVMMQILGD-Y 234
Query: 530 VINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTA 589
A +M+ + + L L G RIV+ SE ND+ N A++K +TGGD +TA
Sbjct: 235 ANAAPPGFLMEKGKFT--EHSTELTELHGRRIVVCSELKPNDKFNEARVKLLTGGDTITA 292
Query: 590 RLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDASFAQKL 647
R + ++ P + +++ N V A+WRR +IPF++ + + + + AQ+L
Sbjct: 293 RRMRQDFFTFRP-THKLWLLGNHRPEVGTGGYAFWRRMRIIPFERKVPDELKIDNLAQEL 351
Query: 648 ETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGEN- 706
W ++G + Y++ + P A E + D +I + C GE
Sbjct: 352 VRDEGPGILHWLIQGAQHYLATRDPLHGPASVRLATEAYEKTEDHIGRFIAERCTKGEGG 411
Query: 707 -----LWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWK 761
L E L SY + +E + ++R ++Q G+ +
Sbjct: 412 QPNPELRVEQKLLYASYGRWCSEEG---IRPATSRAFASRIRQ---ELGLASPAEMIKNN 465
Query: 762 SKRIIKGLKLKPAFESVDD 780
+++ GL L +
Sbjct: 466 DRKLYPGLALLADAATEPG 484
>gi|148252805|ref|YP_001237390.1| putative phage / plasmid primase P4 [Bradyrhizobium sp. BTAi1]
gi|146404978|gb|ABQ33484.1| putative Phage / plasmid primase P4 [Bradyrhizobium sp. BTAi1]
Length = 749
Score = 397 bits (1021), Expect = e-108, Method: Composition-based stats.
Identities = 155/782 (19%), Positives = 265/782 (33%), Gaps = 80/782 (10%)
Query: 18 FKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKL----PACGFGFVCGVGEQPLYAFDIDSK 73
++PL KRP + +++ + P +G G G ++ DID +
Sbjct: 20 LPVLPLLAEQKRPAIKRGVHGATTNKKELKRYFRNNPQANYGVSTG-GTSNIFVLDIDGR 78
Query: 74 DEKTANTFKDTFEILHGTP---IVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILG 130
++ P V G FR N I + + +G LDI G
Sbjct: 79 --AGKHSLSKLISEHGKLPRTVTVLTGSGEHR--YFRGNGTPI-RNSSGRLGEG-LDIRG 132
Query: 131 CGQYFVAYN-IHPKTKKEYTWT--TPPHRFKVEDTP-----LLSEEDVEYLFKFFQEITV 182
G Y V IHP + K Y++ + P L+S + + ++ V
Sbjct: 133 DGGYVVGPGSIHP-SGKVYSFKEGRALDDVAIAKAPPWLLSLISSDRPHQATRM--QLEV 189
Query: 183 PLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAV-HHETR 241
P ++ + + + C + + +
Sbjct: 190 PTNNSRRLAAYLVAAQDRELERLSRAPNHRRNHCLNRSA--------FKLGQLLPYRILD 241
Query: 242 GSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRS----TFTSLFYHHGKL 297
++++ + +E + + +
Sbjct: 242 EGGCTRKLSEV--ARSIGLEESEIIPTIRSGLSAGSRNPRPLHFLKCQIDNPAVAKNESQ 299
Query: 298 IPK---GLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITAS 354
P+ L R +D N F+ LYT K W D W
Sbjct: 300 TPELTIELAKLRENDTDNAQRFASRWADRILYTP-GKGWLVFDGKR---WKPD---SLLE 352
Query: 355 IMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSI 414
M F + E + +K+ R R+ SK A S+
Sbjct: 353 CMEFAKITARMIA--CEAQHLPDDQAKATR-------RKFADSSLSKGSLERMIDLAKSL 403
Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVS 474
+ LD++ L G +DL TG +TK +F ++
Sbjct: 404 VMVDDSRLDANPWLLNTTTGTIDLRTGDCDDHDPRDLLTKMIPVAADPTAKCPQFRKFLN 463
Query: 475 GYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRG-VGGSGKSTLMNLIKYAFGNQYVIN 532
+M Y +C G L G + Q F G G +GKSTL+NL++ G+ Y +
Sbjct: 464 RITGGDRALMRYLKKCAGYTLTGSTQEQVFFFCYGKSGSNGKSTLINLLRDMLGD-YSRH 522
Query: 533 AEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLN 592
++ + A L RL G R+V E N + ++ AK+K MTGG+ +TAR
Sbjct: 523 TPTETLLTKQYDNNIPA--DLARLAGVRMVTAIEANFDRHLDEAKLKSMTGGEPITARFM 580
Query: 593 YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETK 650
+ + +PA F ++V N VR D A+WRR VIPFD I +D KL +
Sbjct: 581 RQDYFEFTPA-FKLWLVANDMPRVRGTDTAFWRRVRVIPFDVQIPESEKDPELPAKLRDE 639
Query: 651 YTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEE 710
+ W ++G KA+ ++GL P+ A + D + ++ +C +
Sbjct: 640 F-PGVLAWAVRGCKAWQAEGL--AEPQTVKLASGRWLEAADHLKRFVAECLIVDPENRLP 696
Query: 711 SHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLK 770
S SL YS + + + ++ + + +L++ KE K GLK
Sbjct: 697 SSSLLNRYSNWCSKNGE---QPLTVQKLNASLREA-------HNFTHKESKHGSEWVGLK 746
Query: 771 LK 772
L+
Sbjct: 747 LR 748
>gi|313123979|ref|YP_004034238.1| DNA-polymerase or DNA-primase [Lactobacillus delbrueckii subsp.
bulgaricus ND02]
gi|312280542|gb|ADQ61261.1| Putative DNA-polymerase or DNA-primase [Lactobacillus delbrueckii
subsp. bulgaricus ND02]
Length = 784
Score = 397 bits (1021), Expect = e-108, Method: Composition-based stats.
Identities = 110/488 (22%), Positives = 182/488 (37%), Gaps = 43/488 (8%)
Query: 288 TSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLT 347
H + +A RF D + F Y K WY DK+NV W
Sbjct: 321 AKNAEHPHRSYDDMGMAQRFQDRWPDT---------FRYLVADKEWYYYDKDNV--WKKD 369
Query: 348 LDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQ 407
K + +++ +D PE ++ + F + R S+A A
Sbjct: 370 DRKNVEKACDVVINELKDEPLY--VPEGVSEEDAAKAFTKFKKHMR------SRAAKEAM 421
Query: 408 SLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGE--P 465
E + +++ D L ++G +DL G ++ F
Sbjct: 422 IKEIMHLLAVSHGEFDQDPMLLNVKNGYVDLTDGTLHDADWTKMFSRQASVEFSPNAEYD 481
Query: 466 SQEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524
+ + F +E ++Y + +G +L G Q G G +GKS ++ +I
Sbjct: 482 HPMWDKFLYQTFGGDQEAIEYIQKAIGYSLTGLTSEQVLFFCYGKGRNGKSLMLKVISDI 541
Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGG 584
G+ Y A ++ AN + RL G+R V+ SE NE +N KQ+TGG
Sbjct: 542 LGS-YSQTMSADTLIVK--GSTNGANSDIARLEGARFVVSSELNEGSRLNEGLTKQITGG 598
Query: 585 DCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DAS 642
D + AR YG + P ++ N +R D+ WRR I++PFD IA D
Sbjct: 599 DRVVARHLYGKEFEFDPCC-KIWMATNHEPIIRGTDEGIWRRIIILPFDHIIAKEDVDPK 657
Query: 643 FAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCD 702
KL ++ W ++G Y +GLD +PE A E+ R D QA+++D
Sbjct: 658 LYDKLMSEAV-GILNWAVEGAIKYQLEGLD--VPESIKSAVEDYRGQMDEVQAFLEDETV 714
Query: 703 IGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKS 762
E S L + ++ + Y K F +K + +K +
Sbjct: 715 PCEGAQVSSKVLYSKFQDWARRNGEYV------------FSHKAFSQKMKDKCKKKHTRV 762
Query: 763 KRIIKGLK 770
+ G++
Sbjct: 763 GTVYLGIR 770
>gi|314933979|ref|ZP_07841344.1| putative nucleoside triphosphatase, D5 family [Staphylococcus
caprae C87]
gi|313654129|gb|EFS17886.1| putative nucleoside triphosphatase, D5 family [Staphylococcus
caprae C87]
Length = 769
Score = 397 bits (1019), Expect = e-108, Method: Composition-based stats.
Identities = 117/471 (24%), Positives = 190/471 (40%), Gaps = 43/471 (9%)
Query: 304 ASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMK 363
A RF D Y Y F Y D W DK ++ +D++ SI N V
Sbjct: 329 ADRFIDRYGNLYKYSYIANKF-YIYDGMKWKVDDKGSI---RKLIDEMIESIKNEKVLHS 384
Query: 364 EDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLD 423
EDV + R +F Y++ +K + + T D D
Sbjct: 385 EDV------------TEEEAREFFQKYYKKTR-GTQAKKNIMNELM---HRRPATPDEFD 428
Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEV 482
L +G +DL + + K ++ T T + E +LD ++ F + V
Sbjct: 429 KDDMLLNVANGYIDLTSRELYKHDINKMFSQITNTDYTEKMQPAVWLDFLNDIFAGDKAV 488
Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542
+ Y + +G +L G + Q + G G +GKS + +I G+ Y N +A +M +
Sbjct: 489 IRYIQKALGYSLTGSTREQIMFILFGKGRNGKSIFVEVISEILGD-YSNNMQAKSLMVKK 547
Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602
N + RL +R V SE NE + IKQ+TGGD TAR Y + +P
Sbjct: 548 N---DNVNTDIARLSKARFVTSSEPNEGFRFDEGLIKQLTGGDKATARFLYAEEFEYTP- 603
Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAKKWFL 660
F ++ N +R DD WRR ++IPFD I D KL + W
Sbjct: 604 KFKIWVSTNHKPIIRGTDDGIWRRLVLIPFDVQIPEEKVDKDLKYKLLREA-PAILNWMA 662
Query: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSE 720
+G ++ +GL +PE +A + R D + +I+D C ++ ++H L + Y +
Sbjct: 663 EGAYMWMQEGL--AMPEKLKEASKAYRNEMDVIEQFIEDECKRVDDGKVKAHELYELYKK 720
Query: 721 YREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771
+ + NY ++S + +K+K F K S GL++
Sbjct: 721 WADDNGNY---KMSNKDFGKKMKEK-FE--------YKRITSGMFYFGLEI 759
>gi|325478724|gb|EGC81835.1| phage/plasmid primase, P4 family, C-terminal domain protein
[Anaerococcus prevotii ACS-065-V-Col13]
Length = 742
Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats.
Identities = 124/560 (22%), Positives = 213/560 (38%), Gaps = 46/560 (8%)
Query: 240 TRGSSKGKEIARR-WSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLI 298
+++ +E+ + S ++ W + + A Y G
Sbjct: 204 YGNTNEARELFDKKASLCSPPLPDDELEQIWRS-ACKFYKKVAASEDYVPPEEYTEG--- 259
Query: 299 PKGLLASRFSDAYNKAMFSIYKKGHFLYTADTK-------AWYKKDKNNVYIWSLTLDKI 351
L S FSD +F + ++ T W + + + K
Sbjct: 260 -INLRPSEFSDIGQAEVFVREYQDRIRFSPSTGFLVYNDSYWEESELKAQGYSQDLVLKQ 318
Query: 352 TASIMNFLVSMKEDV-------------FDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEE 398
I N L+ M ED+ + E D ++ S + Y++ V+
Sbjct: 319 IEEIDNELLKMDEDIKKSGIRDIMSSMSEKKAMEVFDKSQKSIYYKLTSLEAYKKYAVKR 378
Query: 399 NSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGT 458
A E+ + I LD+ L +DL+TG+ E YITK T
Sbjct: 379 GDTRAIHATLKESKPMLEIDQRELDTDEFLLNTPSFTVDLKTGECRDHKAEDYITKETSV 438
Query: 459 PFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTL 517
+ E +LD + +F + E+++Y + G++L+G + I G G +GKST
Sbjct: 439 DPSD-ENMDIWLDALETFFVKDSELIEYVQKVAGISLIGKVYIEALIIAYGDGRNGKSTF 497
Query: 518 MNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK 577
N I N Y + A + N A P L G R++I +E E +N +
Sbjct: 498 WNTISRVL-NLYSGSISADILTVNSKR---NAKPELAETRGKRLLIAAELQEGLRLNTSN 553
Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637
+KQ+ D + A Y + + P S T + N V D+ WRR IVIPF+ I
Sbjct: 554 VKQLCSTDEIVAEKKYRDPFKFIP-SHTLVLYTNHLPKVGALDEGTWRRLIVIPFEAKIE 612
Query: 638 --NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQA 695
+ ++ L K KW ++G K I + +P+ A E ++ + ++
Sbjct: 613 GSSDIKNYTDYLVDKAGGAVLKWLIEGAKKAIDEDFKFSLPKKVADAINEYKESNNWFKH 672
Query: 696 WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755
++++CC+I + E+S + + Y Y + +Y R ST L GF
Sbjct: 673 FLNECCEIDSSYEEKSGEVYQEYRAYCLRTGDYVR---STTDFYSALSSNGF-------- 721
Query: 756 IEKEWKSKRIIKGLKLKPAF 775
+ ++ +I GLKLK F
Sbjct: 722 MRRKTNQGIVINGLKLKSDF 741
>gi|262047907|ref|ZP_06020853.1| phage primase [Lactobacillus crispatus MV-3A-US]
gi|260571785|gb|EEX28360.1| phage primase [Lactobacillus crispatus MV-3A-US]
Length = 773
Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats.
Identities = 144/787 (18%), Positives = 271/787 (34%), Gaps = 81/787 (10%)
Query: 15 HNGFKLIPLRLGDKRPQRLG---KWEEQLLSSEKIDKLP-ACGFGFVCGVGEQPLYAFDI 70
N IP+ + R + W + + + +D++ A G F DI
Sbjct: 30 RNKNTKIPIDPYNGRAGKSNDPSTWSDFNTALKALDEIERADGLAFY---FTNGYVGLDI 86
Query: 71 DSKDEKTAN---------TFKDTFEILHGTPIVRIGQKPKILI-PFRMNKEGIKKKKTTE 120
D + A+ + F ++ + + Q + F+ G +++K
Sbjct: 87 DHISDDLADWHQGDSSVSNLINKFRLMTDETYMEVSQSGTGIHCIFKGEIPGNRRRKGNY 146
Query: 121 STQGHLDILG-CGQYFVAYNI----HPKTKKEYTWTTPPHRFKVE--DTPLLSEEDVEYL 173
G I K + Y + + + + P ++ D+
Sbjct: 147 EMYQQGRFFALTGNSIGIPKIVTLSKEKMQALYNFLFGADKSVPDKIEEPEITALDLS-- 204
Query: 174 FKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVV 233
+I K K + + Y + F+ G
Sbjct: 205 ---IPDIIQRAEKSKTGTRFTMFMKGGWEQFYNSHSEADMAFANDLAFWTG--------- 252
Query: 234 MAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKW-----DTFDFEEIGDTAKKRSTFT 288
R K I R S YDE+ + + E + ++
Sbjct: 253 -------RDFHKMDTIFRNSSLMRDKYDEKRGATTYGISLLNKAISEAVNIYNPEQDGKE 305
Query: 289 SLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTL 348
+ K +A + D + F Y A K WY N W L
Sbjct: 306 PDLVFNWNKPKKRAVARSWDDTGRGLRLNDQFGDVFRYMAADKTWYFY---NGSYWELDN 362
Query: 349 DKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQS 408
+ +V++ + +K+ ++ + E S
Sbjct: 363 GRHIELAAEKVVNLIKTENPDFSFATQQDKDKA------MKEWNKFIKESRSHMAKIHMI 416
Query: 409 LEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE 468
E +I + D + L + G +DL G+ + ++ T + + +
Sbjct: 417 EEFKKYVTIDHGVFDHDNMLLNTESGYVDLTNGELKDHDIKKMFSEQTASEYSDNIDCPM 476
Query: 469 FLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527
+ D + F E+++ Y + VG ++ G Q F + G G +GKS +N I+ G+
Sbjct: 477 WKDFLEQIFNHDEKLIHYIQKAVGYSITGSTAEQVFFLLLGTGRNGKSVFINTIRNILGS 536
Query: 528 QYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCM 587
Y I+ + +G AN + RL +R+V SE NE ++ + +KQ+TGGD +
Sbjct: 537 -YAKQMSVESIIVHN--SSGSANSDIARLENTRLVTSSEANEGSRLDESLVKQLTGGDRI 593
Query: 588 TARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQ 645
AR YG + P F ++ N F+R D+ WRR V+PF+ I D +
Sbjct: 594 LARFLYGQEFEYDP-KFKIWMATNHLPFIRGTDEGIWRRIKVVPFNVQIPANKVDKNLEN 652
Query: 646 KLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE 705
KL+ ++T W ++G + +GL PEV A ++ R+ D +A++D+CC G
Sbjct: 653 KLKAEWT-GILNWIVQGAIMWQVEGLK--DPEVVQDASKQYRENMDPLEAFLDECCKAGS 709
Query: 706 NLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRI 765
N L +Y ++ + + +S + +K + + ++
Sbjct: 710 NYTIMGRPLYNAYRDWARESNEH---LMSMTKFGREMAKK---------LPKTKERNGTR 757
Query: 766 IKGLKLK 772
G++LK
Sbjct: 758 YVGIQLK 764
>gi|293401137|ref|ZP_06645281.1| putative phage/plasmid DNA primase [Erysipelotrichaceae bacterium
5_2_54FAA]
gi|291305263|gb|EFE46508.1| putative phage/plasmid DNA primase [Erysipelotrichaceae bacterium
5_2_54FAA]
Length = 757
Score = 395 bits (1014), Expect = e-107, Method: Composition-based stats.
Identities = 123/614 (20%), Positives = 217/614 (35%), Gaps = 69/614 (11%)
Query: 210 ITAFLSC--FGEEFYNGSHDEWI------PVVMAVHHE-----TRGSSKGKEIA-RRWSK 255
+T FL F E+ +G +D I M+ K + +K
Sbjct: 167 LTEFLDEDLFDEDMEDGQYDGSIIPEGSRNATMSRFAGRVIKKYGDGDKAYQAFLEEVAK 226
Query: 256 QGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAM 315
D + W + A++ Y+ P +SD +
Sbjct: 227 CVPPLDNSELSTIWHSAQ-RFFARVAQQDGYVAPEVYND----PSCYKPEDYSDVGQAEV 281
Query: 316 FSIYKKGHFLYTADTKAWYKKDKNNVYIWSLT---------------LDKITASIMNFLV 360
+ Y Y+ T + + + W + + + +M L
Sbjct: 282 LAKYFSNELRYSPAT----HFIRYSDHYWQESEPGAQAVAHELTRRQMKEANNDLMEALD 337
Query: 361 SMKE---------DVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEA 411
MK +E+ + + F Y ++ T+ E+
Sbjct: 338 KMKNCGAQNILDSTSKSKAEQLMNEEQLQVYQEFLAAKAYLNFAIKRRDSKNVTSTLKES 397
Query: 412 GSIFSITSDLLDSSSRFLGEQDGILDLETGQK--VKPTKELYITKSTGTPFVEGEPSQEF 469
+ I+ LD+ L + DL G + + E +ITK T + + +
Sbjct: 398 HPMLEISPRDLDADCFALCTPEATYDLRKGIAGAREHSAEDFITKITSVSPSQ-KGMPIW 456
Query: 470 LDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528
LD ++ F+ ++E++DY G+A +G + I G G +GKST N I G
Sbjct: 457 LDSLNLIFQHNQELIDYVQMICGLAAIGKVYVEALIIAYGDGRNGKSTFWNAISRVLG-L 515
Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588
Y N A + P + + G R++I +E E +N + +KQ+ D +
Sbjct: 516 YSGNISADTLTVGCRRNI---KPEMAEVKGKRLLIAAEMQEGARLNDSTVKQLCSTDDVF 572
Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQK 646
A Y + +S P T + N V DD WRR IVIPF+ I ++ ++++
Sbjct: 573 AEKKYKDPFSFKPC-HTLVLYTNHLPRVSASDDGIWRRLIVIPFNAKITGSSDIKNYSEY 631
Query: 647 LETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGEN 706
L W ++G K I + +P +A E R D + +++D CD+G
Sbjct: 632 LYDNAGEAILAWVIEGAKKVIELDYQIPVPACVQEAINEYRSQNDWFSHFLEDKCDVGIE 691
Query: 707 LWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRII 766
E S +L ++Y Y Y R ST L+ G+ KR
Sbjct: 692 YKESSSALYQAYRNYCMDTNEYVR---STADFYFALENAGYE--------RITQNRKRYF 740
Query: 767 KGLKLKPAFESVDD 780
KGL+++ + ++
Sbjct: 741 KGLRIRTEDDFEEE 754
>gi|254385240|ref|ZP_05000571.1| conserved hypothetical protein [Streptomyces sp. Mg1]
gi|194344116|gb|EDX25082.1| conserved hypothetical protein [Streptomyces sp. Mg1]
Length = 464
Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats.
Identities = 98/485 (20%), Positives = 186/485 (38%), Gaps = 33/485 (6%)
Query: 300 KGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFL 359
GL+ SD N +F G + + WY+ D W + D L
Sbjct: 7 AGLIPDTLSDRGNAKLFVRLYAGDYRHVP-GLGWYRWDTTR---WQVDEDDTVVWAAGDL 62
Query: 360 VSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITS 419
+ +P + N + R+ S + +A + +
Sbjct: 63 AEAIA-----TTDPRGIHSNQALQK-------HRRRALSTSGMNAMLTQAKAAPGMVLRA 110
Query: 420 DLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFES 479
+LLD+ L GI+DL TG P + + + + +P+ + ++ F
Sbjct: 111 ELLDADPYALCTPAGIVDLHTGLIRTPEPDKDFHSRSTSTAPKSQPTPRWNRFLADTFGD 170
Query: 480 E----EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535
+ E+ D+ +G ++ G AQ + G G +GKS L++++ G+ Y A
Sbjct: 171 DAEGREMTDFLHLMLGYSITGDVGAQVMPFLFGSGKNGKSVLLDVLMKLLGD-YADAAPP 229
Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595
+M L L G R+++ SE D+ + A++K +TGGD + AR +
Sbjct: 230 GFLMAR---TFEGHPTELAELHGRRVIVCSEVKPGDKFDEARVKLLTGGDRIKARRMRQD 286
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDASFAQKLETKYTL 653
+S +P + +++ N V A+WRR ++PF+K +++ + + A L T+
Sbjct: 287 FFSFAP-THKLWLIGNHRPEVGTGGFAFWRRMRLVPFEKVVSDDRKIDNLADILVTEEGP 345
Query: 654 EAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHS 713
W + G + Y++ D+ P A + D + ++CC + E
Sbjct: 346 GILAWLIDGARRYLAGEKDLTGPAPVRIATTAYAETEDHTGRFFEECCTFDPDHRAEQAR 405
Query: 714 LAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773
L Y + + E +S+R ++ + G+ K SK+ G+ L
Sbjct: 406 LYSVYRTWCQNEGA---PTVSSRAFASRARE---LVGLASPKEMILSNSKKYYPGIGLLA 459
Query: 774 AFESV 778
E+
Sbjct: 460 EEENA 464
>gi|302343981|ref|YP_003808510.1| phage/plasmid primase, P4 family [Desulfarculus baarsii DSM 2075]
gi|301640594|gb|ADK85916.1| phage/plasmid primase, P4 family [Desulfarculus baarsii DSM 2075]
Length = 744
Score = 394 bits (1011), Expect = e-107, Method: Composition-based stats.
Identities = 110/472 (23%), Positives = 197/472 (41%), Gaps = 39/472 (8%)
Query: 313 KAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEE 372
+F+ K Y +T AW+ ++ W + ++ + L D +
Sbjct: 310 ALLFAREHKDDLRYCHETGAWFVWTGSH---WRVEKTRLAFAWARQLCRKAAAGMDNKKV 366
Query: 373 PEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQ 432
+K + + + + + F++TS++ D+ LG
Sbjct: 367 AAALSKAATA--------------------GAVERFAQTDRAFAVTSEIWDADLHLLGTP 406
Query: 433 DGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEV-MDYFTRCVG 491
DG++DL TG +E YITK + +L + + + + + + G
Sbjct: 407 DGVVDLRTGTLRPARREDYITKLAAVAPARSSDAPLWLRFLDEATQGDAMLQRFMRQVAG 466
Query: 492 MALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANP 551
AL G I G GG+GKS +N + G+ Y A + + +
Sbjct: 467 YALTGDISEHALFFIYGPGGNGKSVFLNTLTNILGD-YAATAAMDTFTAS---QGDRHPT 522
Query: 552 SLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPN 611
L L G+R+V +SET E ++IKQ+TGGD ++AR + ++ +P F IV N
Sbjct: 523 DLAMLRGARLVSVSETEEGRPWAESRIKQLTGGDKISARFMRQDFFTYTP-QFKLLIVGN 581
Query: 612 KHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGL 671
+RN D+A RR+ +IPF A+ D KL ++Y +W ++G + GL
Sbjct: 582 HKPVLRNVDEAARRRFNIIPFVHKPASPDKRLEDKLRSEY-PAILRWMIEGCLDWRENGL 640
Query: 672 DVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRK 731
PE +A D + WI++CC+IG WE + L +S+ Y ++ +
Sbjct: 641 LR--PESVKEATAAYFDEQDLFGQWIEECCEIGRASWETTARLFESWKNYADRNGEHAG- 697
Query: 732 RISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDNSN 783
ST+ + NL ++ FI ++ ++RI +G+ +K + D +
Sbjct: 698 --STKAFSANLAKREFIA----DRRTVFGSTQRIFRGIAVKVEHDGRLDGLD 743
>gi|217973530|ref|YP_002358281.1| P4 family phage/plasmid primase [Shewanella baltica OS223]
gi|217498665|gb|ACK46858.1| phage/plasmid primase, P4 family [Shewanella baltica OS223]
Length = 900
Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats.
Identities = 109/485 (22%), Positives = 198/485 (40%), Gaps = 25/485 (5%)
Query: 305 SRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKE 364
+D N F++ +Y + Y D W+ + + +
Sbjct: 430 DTLNDVGNADRFNVLFDERVVYVPELNTTYFYDGRK---WAPSNGRELELARRVGEQIIT 486
Query: 365 DVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDS 424
+ EE N S + RQ + ++ K S I++ DS
Sbjct: 487 QANWMVEESVKNKDKSMHEEAGQLLKFGRQTL---NRKKMADMLEVFKSGNQISASRFDS 543
Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY-FESEEVM 483
+G +G+LDL G+ + K +YI++ + + +L + +E
Sbjct: 544 DPMKMGISNGVLDLTKGKLLAAKKRMYISRYSDITYDSSATCPRWLQFIDEITCGDKEYA 603
Query: 484 DYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP 543
+ R VG L G Q + G G +GKST MN+I+ G+ Y + +SD++
Sbjct: 604 KFLQRIVGYILTGRTDEQVLFFLHGHGCNGKSTFMNVIQRLMGSYY--HQISSDVLLQTN 661
Query: 544 PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPAS 603
+ NPSL +L GSR+V+ +E E ++ +K MTG D + AR Y E
Sbjct: 662 NSSKGPNPSLAKLTGSRLVVANELPEGSRMDENLVKSMTGNDVIVARQLYAKVELEYTPM 721
Query: 604 FTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAKKWFLK 661
F +V N +R+ WRR I++PF+ + D KL + + W L+
Sbjct: 722 FKLIMVGNHKPVIRDTSPGMWRRMIMLPFNASFSQEQMDPLLMDKLYAELS-GILNWALE 780
Query: 662 GVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEY 721
GV+ ++ G+ IP E R +D ++++C G+ + + L ++ ++
Sbjct: 781 GVQMWLKDGIKASIPNSIKSEIAEYRHESDLLAIFLEECTCKGDFTYTDM--LYDAFRKW 838
Query: 722 REQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDN 781
E++ ++ +++ +T L +KGF G SK +IKG+ LK F+ + +
Sbjct: 839 AERDGDW---KMTRNIMTKRLVEKGFEKG--------RHNSKAMIKGINLKSVFDDISEP 887
Query: 782 SNIID 786
+
Sbjct: 888 MGLGP 892
>gi|304439202|ref|ZP_07399120.1| P4 family prophage LambdaSa04 [Peptoniphilus duerdenii ATCC
BAA-1640]
gi|304372334|gb|EFM25922.1| P4 family prophage LambdaSa04 [Peptoniphilus duerdenii ATCC
BAA-1640]
Length = 742
Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats.
Identities = 124/560 (22%), Positives = 215/560 (38%), Gaps = 46/560 (8%)
Query: 240 TRGSSKGKEIARR-WSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLI 298
+ + +E+ + S ++E W + + A Y G
Sbjct: 204 YGKTDEARELFDKKASLCSPPLEDEELEQIWKS-ACKFYKKVAASEDYVPPEEYTEG--- 259
Query: 299 PKGLLASRFSDAYNKAMFSIYKKGHFLYTADTK-------AWYKKDKNNVYIWSLTLDKI 351
L S FSD +F + ++ T W + + + K
Sbjct: 260 -INLRPSEFSDIGQAEVFVREYQDRIRFSPSTGFLVYNDSYWEESELKAQGCSQELVLKQ 318
Query: 352 TASIMNFLVSMKEDV-------------FDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEE 398
I N V M+ED+ + ++N+ S + Y++ V+
Sbjct: 319 LEEIDNGFVKMEEDIKKSGVRETISSMSEKKALASFNDNQKSLYYKLISLEAYKKYAVKR 378
Query: 399 NSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGT 458
A E+ + I LD+ L +DL+TG+ E Y+TK T
Sbjct: 379 GDTRAIHATLKESKPMLEIDQRELDTDEFLLNTPSYTVDLKTGECRDHKAEDYLTKETSV 438
Query: 459 PFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTL 517
+ E ++D ++ +F + E+++Y + G++L+G + I G G +GKST
Sbjct: 439 DPSD-ENIDIWIDALNTFFVKDSELIEYVQKVAGISLIGKVYIEALIIAYGDGRNGKSTF 497
Query: 518 MNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK 577
N I N Y + A + N A P L G R++I +E E +N +
Sbjct: 498 WNTISRVL-NLYSGSISADILTVNSKR---NAKPELAETRGKRLLIAAELQEGLRLNTSN 553
Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637
+KQ+ D + A Y + + P S T + N V D+ WRR IVIPF+ I
Sbjct: 554 VKQLCSTDEIVAEKKYRDPFKFIP-SHTLVLYTNHLPKVGALDEGTWRRLIVIPFEAKIE 612
Query: 638 --NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQA 695
+ ++ L K KW ++G K I + +P+ A E ++ + ++
Sbjct: 613 GSSDIKNYTDYLVDKAGGAVLKWLIEGAKKAIDEDFKFSLPKKVADAINEYKESNNWFKH 672
Query: 696 WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755
++++CC+I + E+S + + Y Y + +Y R ST L GF R+
Sbjct: 673 FLNECCEIDSSYEEKSGEVYQEYRAYCLRIGDYVR---STTDFYSALSSNGFNRVKLRDG 729
Query: 756 IEKEWKSKRIIKGLKLKPAF 775
I+ I+GLKLK F
Sbjct: 730 IK--------IQGLKLKSDF 741
>gi|298346382|ref|YP_003719069.1| phage-associated protein [Mobiluncus curtisii ATCC 43063]
gi|298236443|gb|ADI67575.1| phage-associated protein [Mobiluncus curtisii ATCC 43063]
Length = 747
Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats.
Identities = 124/566 (21%), Positives = 198/566 (34%), Gaps = 56/566 (9%)
Query: 240 TRGSSKGKEIARRWSKQG-STYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLI 298
S + +E+ + + Q + W + + G
Sbjct: 208 FGNSDEARELFEQKATQCVPPLPPSELDAIWHSAL--KFGAKV---VATPGYIPPERYAE 262
Query: 299 PKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNF 358
+GL + F+D + + ++ T W N W T A
Sbjct: 263 IQGLRPTDFTDVGQANVLADEYAQKLAFSEAT-DWLVY---NGSFWEETRPGSRAIAQEL 318
Query: 359 LVSMKEDVFDLSEEPEDNNKNS------------------------KSPRFWFNTDYRRQ 394
E L E+ + ++ + Y +
Sbjct: 319 TTRQLEQAAQLLEKAREACDSTGVTQLLSAMSLTKAKNLFTNVQWTAYEQLTGAQTYEKY 378
Query: 395 NVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITK 454
++ TA EA + +T LD+ L G +DL TGQ + +ITK
Sbjct: 379 VLKRRDSKAITASLKEAAPMLQVTQADLDADPFALNTPGGTIDLTTGQMYEHDYGDFITK 438
Query: 455 STGT-PFVEGEPSQEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGS 512
T T P +G + +L + +F+ +E++DY R VG+ +G + I G G +
Sbjct: 439 QTTTDPATKGMDT--WLAALEVFFQGDQELIDYVQRIVGLTAIGKVYVEALIIAYGDGRN 496
Query: 513 GKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDE 572
GKST N I G Y N A + P L G R++I +ET E
Sbjct: 497 GKSTFWNTIARVLGT-YAGNISADALTVGVKR---NVKPELAEAKGKRLLIAAETEEGMR 552
Query: 573 INAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF 632
++ + KQM D + A Y ++ +P S T + N V D WRR IVIPF
Sbjct: 553 LSTSIAKQMASTDLLYAEKKYKAPFAFAP-SHTLVLYTNHLPRVGAMDVGIWRRLIVIPF 611
Query: 633 DKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGT 690
+ I + ++A+ L +W + G + I + P +A E R
Sbjct: 612 EAKIEGSSDIKNYAEHLYQNAAGAVLQWIVDGARKVIDDDFVLKPPPKVRRALEAYRFEN 671
Query: 691 DTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGG 750
D ++DD C+I + + S L Y Y Y R ST L+Q GF
Sbjct: 672 DWMTHFLDDNCEIDPSFTQPSGELYSVYRAYALSVGEYAR---STSDFYSALEQLGF--- 725
Query: 751 IKREKIEKEWKSKRIIKGLKLKPAFE 776
+ K+ R + GL+LK F
Sbjct: 726 -----RRRRTKNARYVDGLRLKSEFN 746
>gi|319757798|gb|ADV69740.1| Phage DNA polymerase [Streptococcus suis JS14]
Length = 761
Score = 392 bits (1007), Expect = e-106, Method: Composition-based stats.
Identities = 124/551 (22%), Positives = 194/551 (35%), Gaps = 52/551 (9%)
Query: 261 DEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYK 320
D+ + W + +S T ++ L P +SD + +
Sbjct: 238 DKAELDTIWGSAVRFYNRTIKTSKSYVTPDAFNRETLKPDD-----YSDVGEAGVLAREY 292
Query: 321 KGHFLYT-------ADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEP 373
YT D W + + + D+ A L S + + +
Sbjct: 293 ANKLAYTNATDYLYYDGTHWRENKQLALGAVVHFTDEQLAEANALLESADKQLQSSGIDE 352
Query: 374 --------------EDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITS 419
E + + ++ + ++ A A + S+
Sbjct: 353 LTIKAGGKRLENAVETPLQLKYLKAYLAAKEFHKFVMKHRDYKNLMAVYNTAKPMLSVEL 412
Query: 420 DLLDSSSRFLGEQDGILDLETGQ--KVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF 477
LDS L + DL G + + E YITK T + L + +
Sbjct: 413 SELDSDDLLLNTPEATYDLRKGINGQQEHNPEDYITKITAVSPSDQGMGLWQETLATFFC 472
Query: 478 ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
+E++DY +GMA +G + I G G +GKST N I G+ Y A
Sbjct: 473 NDQELIDYVQEIIGMAAIGKVYQEHMIIAYGGGANGKSTFWNTIARVLGS-YSGKLSADA 531
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
+ + +P L L G R+VI SE E +N A +KQ+T D + A Y + +
Sbjct: 532 LTMSNKR---NVSPELAELKGKRLVIASEMAEGMRLNTAVVKQITSTDEIQAEKKYKDPF 588
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEA 655
P S T + N V DD WRR +VIPF+ I R +FA L
Sbjct: 589 HFVP-SHTLVLYTNHLPKVGANDDGTWRRLVVIPFNAKITGRSDIKNFADHLYDNAAPAI 647
Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLA 715
W ++G + I +P + + R+ D ++ DCC +G+ L E+S L
Sbjct: 648 LSWIIEGAEKAIKANFKTKVPTAVSSSVKAYREANDWLGHFLSDCCQVGDQLTEKSGELY 707
Query: 716 KSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAF 775
Y Y + + Y R ST L Q GF K +I GLKL
Sbjct: 708 SQYRAYCAKNMEYTR---STTDFYSALDQAGF--------KRKRTSKGNLILGLKL---- 752
Query: 776 ESVDDNSNIID 786
VDD + +D
Sbjct: 753 --VDDGYDFLD 761
>gi|296394743|ref|YP_003659627.1| phage/plasmid primase [Segniliparus rotundus DSM 44985]
gi|296181890|gb|ADG98796.1| phage/plasmid primase, P4 family [Segniliparus rotundus DSM 44985]
Length = 761
Score = 391 bits (1005), Expect = e-106, Method: Composition-based stats.
Identities = 139/814 (17%), Positives = 273/814 (33%), Gaps = 88/814 (10%)
Query: 1 MPVMQWKEQAKQAIHNGFK-LIPLRLGDKRPQRLG---------KWEEQLLSSEKIDKLP 50
M + E A + G++ ++PL G K P G W + + SE+
Sbjct: 1 MAASVYAEHAPRYWAAGWRGVLPLPPGAKTPPPTGFTGHDGPAPSWADVVAWSEE----- 55
Query: 51 ACGFGFVCGVGEQPLYAFDIDSKDEK-TANTFKDTFEILHGTPIVRIGQKPK----ILIP 105
+ + DID K +T + P + + +
Sbjct: 56 -RAGSNLALRLPDGVVGIDIDHYAGKRGGDTLAEAVRRWGPLPPTVMSTSREDGVSGIRL 114
Query: 106 FRMNKEGIKKKKTT--ESTQGHLDILG-CGQYFVAYN-IHPKTKKEYTWTTPPHRFKVED 161
+R+ + E G ++++ +Y VA IHP+ + Y W +
Sbjct: 115 YRLPSPAALTTQIGFPELGLGGIEVVQRHHRYLVAPPSIHPE-GRAYRWLDS-QAMGPAE 172
Query: 162 TPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSK---------TWTNNNNRQYTNREITA 212
P + L + +++ + P + + +
Sbjct: 173 LPE--PGSLPLLPERWRDALAAAPAPIAAPAPIAASDPAAALASLRGGAMSETVRERLDK 230
Query: 213 FLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTF 272
++ + HD + +A+ G A + G + +
Sbjct: 231 HVATVRDPGAGSRHDAALKGALALLRLGEQGHPGVREALD--ELGRAFVAATTAD--GSR 286
Query: 273 DFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKA 332
+ D + +A R +D N + Y A
Sbjct: 287 TPHQAVDEFLRMVENPRGHRLIAATPTPDPVAPRLTDEANADLLVAEHGHGLRYDPARGA 346
Query: 333 WYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYR 392
W + D++ W+ D A+ V + + + ++E ++ + S + R
Sbjct: 347 WLEWDQSR---WAYRPDD--AACFQAAVKTAKSLPEQTKEEREHKRRSLNLRGL------ 395
Query: 393 RQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYI 452
++ ++ + + LD+ L G++DL TG + E
Sbjct: 396 ----------EAMVKTARRDPRIRVDPERLDADPMLLNTPGGVVDLATGALREHDPEALC 445
Query: 453 TKSTGTPFVEGEPSQEFLDLVS-GYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGG 511
TK G + + F ++ + E++ Y R G+A +G + G G
Sbjct: 446 TKLAGCAPDFAQRTPIFDAFLAVSLADDAELIGYLRRLAGLAAIGLPSP-ILPFLHGAGA 504
Query: 512 SGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEND 571
+GKS N++ G+ Y A ++ +R + + RL G R+V+ SE +
Sbjct: 505 NGKSVFANILLRVLGD-YATTAPPDFLLASR---GDRHEAEIARLKGMRLVVCSEVERDS 560
Query: 572 EINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIP 631
+ A+IK +TGGD +TAR YG ++ +P S +++ N VR ++WRR +IP
Sbjct: 561 RFDEARIKLLTGGDRLTARFLYGQHFTFAP-SHCVWLMGNHQPEVRAGGVSFWRRMRMIP 619
Query: 632 FD--KPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQG 689
F P A R + + + + W ++G GL PE A + +
Sbjct: 620 FTVVVPEAERVDALDELIAQEEGPGVLAWIVRGALEARRDGL--ADPEKVRAATRDYAEE 677
Query: 690 TDTYQAWIDDCCDI--GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGF 747
D ++ + C I G+ + E+ + ++YS + + ++ L + G
Sbjct: 678 EDALGRFLAERCRIGGGDMVKIEAGRVYRAYSAWCRRSGES---EMNQNVFGRELTRHG- 733
Query: 748 IGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDN 781
I + K L L P E+ +
Sbjct: 734 --------IGRTRSGKWFYTNLHLLPDDEADERE 759
>gi|24575142|gb|AAL06713.1| putative primase/helicase-like protein [Streptomyces globisporus]
Length = 511
Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats.
Identities = 90/494 (18%), Positives = 185/494 (37%), Gaps = 37/494 (7%)
Query: 295 GKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITAS 354
+++ GLL +D N +F + + WY+ D W D
Sbjct: 47 EQVLGVGLLPDSLTDRGNAKLFVRLYAQDYRHVT-GLGWYRWDGTR---WQSDEDDTVLW 102
Query: 355 IMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSI 414
+ + + +P ++ + R+ S + +
Sbjct: 103 VAGEMAESIA-----ATDPRGVYSDAALRK-------HRRRALSTSGINALLSQARSAPG 150
Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKV--KPTKELYITKSTGTPFVEGEPSQEFLDL 472
+++ LD+ L G++DL +G+ P ++ + ++ P P+ +
Sbjct: 151 MVLSAGALDADPYMLCTPAGVVDLRSGKLRAADPDRDFHSRSTSIGPRQM--PTPRWDLF 208
Query: 473 VSGYFESE----EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528
++ F + E++ + +G +L G AQ + G G +GKS L++++ G+
Sbjct: 209 LTDTFGDDARGREMIRFLHLLLGYSLTGDVGAQVMPFLFGSGKNGKSVLLDVLIKLLGD- 267
Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588
Y A +M L L G R+++ SE D + +++K +TGGD +
Sbjct: 268 YADAAPPGFLMARPFE---GHPTDLAELHGRRVIVCSEVKPGDRFDESRVKLLTGGDRIK 324
Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDA--SFAQK 646
AR + +S +P + +++ N V A+WRR +IPFD+ ++++ + A
Sbjct: 325 ARRMRQDFFSFAP-THKLWLLGNHRPEVGTGGYAFWRRMRLIPFDRVVSDQQKIDNLADI 383
Query: 647 LETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGEN 706
L T+ W + G Y++ D+ PE A + D ++ + C +
Sbjct: 384 LVTEEGPGILNWLITGAHHYLNSPRDLTGPETVRIATTAYAETEDHTGRFLTERCTFQPH 443
Query: 707 LWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRII 766
E L +Y+ + E S+R +++ G+ K ++
Sbjct: 444 HRVEQARLYHAYTAWSRHEG---INPASSRAFAARIREA---VGLASPKEMLLSNQRKYY 497
Query: 767 KGLKLKPAFESVDD 780
G+ L E +
Sbjct: 498 PGIGLLAVAEEEAE 511
>gi|190573868|ref|YP_001971713.1| hypothetical protein Smlt1886 [Stenotrophomonas maltophilia K279a]
gi|190011790|emb|CAQ45410.1| putative phage-related protein [Stenotrophomonas maltophilia K279a]
Length = 766
Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats.
Identities = 113/521 (21%), Positives = 187/521 (35%), Gaps = 50/521 (9%)
Query: 260 YDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYN-----KA 314
Y E+ WD D G + H +A +
Sbjct: 275 YPPEDAPEGWDAADAIAEGFDVATFLSHGPRLQMHDLADTDEPVAGSDESVWGTEDALAL 334
Query: 315 MFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPE 374
F+ + Y A W D W T + + + S+ ++ P+
Sbjct: 335 AFTRRYHRDWRYVAAWGRWLVWDGQR---WRTED---TLAATDLIRSVCRQTAVRADNPK 388
Query: 375 DNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDG 434
K + + + A + T+D D+ L G
Sbjct: 389 VAAK-----------------LASSGTVSGVERLARADRRHAATTDEWDADPWLLNTPGG 431
Query: 435 ILDLETGQKVKPTKELYITK-STGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMA 493
++DL+TG++ + +TK +T TP E +F+D V+G + + Y R VG A
Sbjct: 432 VVDLKTGRQRPHERADRMTKVTTATPSGECPTWLQFIDEVTG--GDQALQAYLQRMVGYA 489
Query: 494 LLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL 553
L G + + G G +GKS +N + G+ Y NA M+ R + +
Sbjct: 490 LTGATQEHALFFLYGTGANGKSVFVNTLATILGD-YATNAPMDTFMETR---TDRHPTDM 545
Query: 554 IRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKH 613
L G+R V ET + +K+K +TGGD ++AR + + P F F+ N
Sbjct: 546 AGLRGARFVAAIETEQGRRWAESKVKNLTGGDKISARFMRQDFFEFFP-QFKLFVAGNHK 604
Query: 614 LFVRNPDDAWWRRYIVIPF--DKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGL 671
+RN D+A RR +IPF P RD QKL + W ++G + G
Sbjct: 605 PAIRNIDEAMKRRLHLIPFTITVPPERRDKHLQQKLLAER-DGILAWAVQGCLDWQRHG- 662
Query: 672 DVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRK 731
+D P+ ++A EE + D W+D+ C N + L + ++ E +
Sbjct: 663 RLDPPQRVVEATEEYFEAEDALGRWLDERCVREANAKSLTAELFNDWKQWAEAAGEFTG- 721
Query: 732 RISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLK 772
S + L +G + R +GL LK
Sbjct: 722 --SQKRFADLLLTRGLDKW-------RNGMGLRGFQGLGLK 753
>gi|83648331|ref|YP_436766.1| hypothetical protein HCH_05685 [Hahella chejuensis KCTC 2396]
gi|83636374|gb|ABC32341.1| predicted ATPase [Hahella chejuensis KCTC 2396]
Length = 758
Score = 391 bits (1003), Expect = e-106, Method: Composition-based stats.
Identities = 118/520 (22%), Positives = 198/520 (38%), Gaps = 51/520 (9%)
Query: 263 ENFNYKWDTFDFEEIG---DTAKKRSTFTSLFYHHGKLIPKGLLASR--FSDAYNKAMFS 317
E+ WD+ D E G + + + LL+ ++ F+
Sbjct: 274 EDKPEGWDSADALEEGFDAVGFISAGPRMPIEPSCDEEDSETLLSDVDWATEDGLAMAFT 333
Query: 318 IYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNN 377
+ Y + W K + W+ M F+ + V + + D++
Sbjct: 334 RRYGEDWRYCS---LWGKWLVWSGMRWNSD-------QMLFVQHLVRGVCRAASQKADSD 383
Query: 378 KNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILD 437
K R+ + + + + + + T + D+ L G+++
Sbjct: 384 K-------------RKGRLASAATIAAVEKIARSDPAHASTPEEWDADIWALNTPGGVVE 430
Query: 438 LETGQKVKPTKELYITKST-GTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLG 496
L TGQ +E +TKST TP + + FL V+G + E+ +Y R VG L G
Sbjct: 431 LRTGQIRAHRREDRMTKSTSATPKGDCPTWRTFLADVTG--QDAELQEYLQRVVGYCLSG 488
Query: 497 GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRL 556
A + G G +GKS +N++ G+ Y NA M+ R + L L
Sbjct: 489 ATSAHALFFLYGTGANGKSVFVNVVGAILGD-YAANAPMDTFMEAR---GDRHPTDLAGL 544
Query: 557 MGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV 616
G+R V ET + N +K+K +TGGD ++AR + + +P F I N +
Sbjct: 545 RGARFVSAIETEQGRRWNESKVKAITGGDKISARFMRQDFFEYAP-QFKLLIAGNHKPAI 603
Query: 617 RNPDDAWWRRYIVIPF--DKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD 674
RN D+A RR +IPF P RD KL + W ++G ++ GL
Sbjct: 604 RNVDEAMKRRLHLIPFTVTVPPEKRDGGLTDKLLAERG-GILAWAVEGCLEWLRDGLKP- 661
Query: 675 IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIS 734
P+ A EE + D WI++ C+ S L + E+ E+ Y S
Sbjct: 662 -PDCVRAATEEYFEAEDALGQWIEERCERIGQAKTASSELYADWREWAERAGEYVG---S 717
Query: 735 TRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPA 774
+ + L + F+ + R KGL+L+P
Sbjct: 718 IKRFSETLITRDFMQ-------SRLHGGTRGFKGLRLRPK 750
>gi|332523756|ref|ZP_08400008.1| phage/plasmid primase, P4 family, C-terminal domain protein
[Streptococcus porcinus str. Jelinkova 176]
gi|332315020|gb|EGJ28005.1| phage/plasmid primase, P4 family, C-terminal domain protein
[Streptococcus porcinus str. Jelinkova 176]
Length = 761
Score = 391 bits (1003), Expect = e-106, Method: Composition-based stats.
Identities = 136/660 (20%), Positives = 228/660 (34%), Gaps = 68/660 (10%)
Query: 167 EEDVEYLFKFFQEITVPLVK-----DKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEF 221
+E++ +KFF + + + ++ +W + + I F +F
Sbjct: 130 KEELCNQYKFFDDHAKDAARFFFGNPQAEVVWHDSWLTIDEDLFQAVSIED-EEDFDADF 188
Query: 222 Y--------NGSHDEWIPVVMA-VHHETRGSSKGKEIARRWSKQG-STYDEENFNYKWDT 271
Y GS + + V A + + + ++ +++ D+ + W +
Sbjct: 189 YTPPNGPIQQGSRNSTMSVFAAKILKRLGVTQEARDGFDEQAQKCVPPLDKAELDTIWGS 248
Query: 272 FDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYT---- 327
+ ++ L P +SD + + YT
Sbjct: 249 AVRFYNRTIKTSKGYVAPDAFNRETLKPDD-----YSDVGEAGVLAREYANRLAYTNATD 303
Query: 328 ---ADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEP----------- 373
D W + + + D+ A L S + + +
Sbjct: 304 YLYYDGTHWRENKQLALGAVVHFTDEQLAEANALLESADKQLQSSGIDELTIKAGGKRLE 363
Query: 374 ---EDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLG 430
E + + ++ + ++ A A + S+ LDS L
Sbjct: 364 NAVETPLQLKYLKAYLAAKEFHKFVMKHRDYKNLMAVYNTAKPMLSVELSELDSDDLLLN 423
Query: 431 EQDGILDLETGQ--KVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTR 488
+ DL G + + E YITK T + L + + +E++DY
Sbjct: 424 TPEATYDLRKGINGQQEHNPEDYITKITAVSPSDQGMGLWQETLATFFCNDQELIDYVQE 483
Query: 489 CVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGK 548
+GMA +G + I G G +GKST N I G+ Y A + +
Sbjct: 484 IIGMAAIGKVYQEHMIIAYGGGANGKSTFWNTIARVLGS-YSGKLSADALTMSNKR---N 539
Query: 549 ANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFI 608
+P L L G R+VI SE E +N A +KQ+T D + A Y + + P S T +
Sbjct: 540 VSPELAELKGKRLVIASEMAEGMRLNTAVVKQITSTDEIQAEKKYKDPFHFVP-SHTLVL 598
Query: 609 VPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAKKWFLKGVKAY 666
N V DD WRR +VIPF+ I R +FA L W ++G +
Sbjct: 599 YTNHLPKVGANDDGTWRRLVVIPFNAKITGRSDIKNFADYLYDNAAPAIMSWIIEGAEKA 658
Query: 667 ISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQEL 726
I +P + + R+ D ++ DCC +G+ L E+S L Y Y + +
Sbjct: 659 IKANFKTKVPTAVSASVKAYREANDWLGHFLSDCCQVGDQLTEKSGELYSQYRAYCAKNM 718
Query: 727 NYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDNSNIID 786
Y R ST L Q GF K +I GLKL VDD + ID
Sbjct: 719 EYTR---STTDFYSALDQAGF--------KRKRTSKGNLILGLKL------VDDGYDFID 761
>gi|315122922|ref|YP_004063411.1| P4 family phage/plasmid primase [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313496324|gb|ADR52923.1| P4 family phage/plasmid primase [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 333
Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats.
Identities = 268/331 (80%), Positives = 298/331 (90%), Gaps = 4/331 (1%)
Query: 463 GEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIK 522
+PS EF++LVS YFESEEVM++FTRCVGMALLGGN+AQRFIHIRGVGGSGKSTLMNLIK
Sbjct: 3 AKPSAEFMNLVSNYFESEEVMNFFTRCVGMALLGGNEAQRFIHIRGVGGSGKSTLMNLIK 62
Query: 523 YAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMT 582
+AFGNQYVINAEASD+MQNRPPEAGKANPSLIRLMGSR+VIISETNENDE+NAAKIKQMT
Sbjct: 63 FAFGNQYVINAEASDVMQNRPPEAGKANPSLIRLMGSRVVIISETNENDELNAAKIKQMT 122
Query: 583 GGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDAS 642
GGDCMTARLNYGNTYSE+ ASFTPFIV NKHLFVRNPDDAWWRRYIVIPFDKPIANRDA+
Sbjct: 123 GGDCMTARLNYGNTYSEARASFTPFIVSNKHLFVRNPDDAWWRRYIVIPFDKPIANRDAT 182
Query: 643 FAQKLETKYTLEAKKWFLKGVKAYISKG--LDVDIPEVCLKAKEEERQGTDTYQAWIDDC 700
FAQKLET+Y LEAKKWFL+G+KAYI G LDV +PEVC+ AKEEER+GTDTYQAWIDDC
Sbjct: 183 FAQKLETEYALEAKKWFLEGIKAYIRNGRNLDVYVPEVCINAKEEERRGTDTYQAWIDDC 242
Query: 701 CDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKE- 759
C++GE EES LA+SYSEYREQELNYDRKRISTRTVTLNLKQKGF EK +
Sbjct: 243 CEVGEGFLEESSILARSYSEYREQELNYDRKRISTRTVTLNLKQKGFKDDRDWEKPRPDR 302
Query: 760 WKSKRIIKGLKLKPAFESVDDN-SNIIDFKR 789
+ RII+GLKLKPAFE +++ +N+IDFK+
Sbjct: 303 GRYLRIIRGLKLKPAFEDIENEPNNVIDFKK 333
>gi|315656932|ref|ZP_07909819.1| P4 family prophage LambdaSa04 [Mobiluncus curtisii subsp. holmesii
ATCC 35242]
gi|315492887|gb|EFU82491.1| P4 family prophage LambdaSa04 [Mobiluncus curtisii subsp. holmesii
ATCC 35242]
Length = 753
Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats.
Identities = 111/562 (19%), Positives = 204/562 (36%), Gaps = 49/562 (8%)
Query: 240 TRGSSKGKEIARRWSKQ-GSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLI 298
+ + +++ R + +E W++ +
Sbjct: 213 YGDTDQARDLFNRKANLCEPPLNEGELQTIWNS--ACRFASKV---AADPGYLPPEAYEA 267
Query: 299 PKGLLASRFSDAYNKAMFSIYKKGHFLY-------TADTKAWYKKDKNNVYIWSLTLDKI 351
GL FSD + Y D W + D + + +
Sbjct: 268 LAGLRPDDFSDVGQADTLAGEYANKIRYSLATKWLVYDHGVWDENDLSAQGVVQELTSRQ 327
Query: 352 TASIMNFLVSMKEDVFDLSEEPEDNNKNSKSP-------------RFW-FNTDYRRQNVE 397
+ S E + + + +SK+ R W +Y + +
Sbjct: 328 LEEADRLIASTWETMTATGADLVMASASSKARGIAKLTPVQATAFRAWDEAKNYHKFVLS 387
Query: 398 ENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTG 457
TA EAG I + LD L G DL G + +TK T
Sbjct: 388 RRLSRNITATLKEAGPILQVRIRDLDVDPYQLNTPAGTWDLRDGTSHEHNPADLLTKQTA 447
Query: 458 TPFVEGEPSQEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKST 516
+ E +Q + D + +F+ E++ Y R VG+A +G + + G G +GKST
Sbjct: 448 VSPSD-EGAQIWADALDVFFQGDPELISYVQRIVGLAAIGQVFVEALVIAYGDGRNGKST 506
Query: 517 LMNLIKYAFGNQY-VINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA 575
N I G I+A+A + R P L G R++I +ET E ++
Sbjct: 507 FWNTIARVLGTYSGTISADALTVGVRR-----NVKPELAEARGKRLLIAAETEEGMRLST 561
Query: 576 AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP 635
+ +KQ+ D ++A + + ++ +P S T + N V D WRR IVIPF+
Sbjct: 562 SNVKQLASTDQISAEKKFKDPFAFTP-SHTLVLYTNHLPRVGAMDAGIWRRLIVIPFNAT 620
Query: 636 IA-NRD-ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTY 693
I + D ++A L W ++G + ++G + P ++A + ++ D +
Sbjct: 621 IEGDTDVKNYADHLFENAGGAILTWIMEGARLIHAEGYKLKAPPQVVQASQAYKEDNDWF 680
Query: 694 QAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKR 753
+++D CD+ + L E + L ++Y + + + R + ++Q GF
Sbjct: 681 SQFLEDSCDVEDGLSERAGDLYQTYRAWAQNTSGWARPMV---DFNAAVEQAGF------ 731
Query: 754 EKIEKEWKSKRIIKGLKLKPAF 775
+ K+ K + GL + F
Sbjct: 732 --VRKKTKHGMYVYGLAIASEF 751
>gi|76786816|ref|YP_329358.1| prophage LambdaSa04, DNA primase [Streptococcus agalactiae A909]
gi|76561873|gb|ABA44457.1| prophage LambdaSa04, DNA primase, P4 family [Streptococcus
agalactiae A909]
Length = 761
Score = 390 bits (1001), Expect = e-106, Method: Composition-based stats.
Identities = 123/561 (21%), Positives = 192/561 (34%), Gaps = 60/561 (10%)
Query: 255 KQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKA 314
K D+ + W + + ++ G+L P +SD
Sbjct: 232 KCDPPLDKTELDTIWGSAVRFYNRTIKGSEGYVSPEAFNRGELKPDD-----YSDIGEAG 286
Query: 315 MFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFD------ 368
+ + YT T W +++ F+ ED D
Sbjct: 287 VLAREYGEKLAYTNATD----YLTFTGQYWKEDKQLAIGAVLEFMDLQLEDASDKYEKVI 342
Query: 369 -------------------LSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSL 409
L++ E + + Y + ++ TA
Sbjct: 343 KDLVNTGVSENLVREGGKALAKVIETPTQQKLYTTYLAARTYYQFVMKRRDYRYITATHN 402
Query: 410 EAGSIFSITSDLLDSSSRFLGEQDGILDLETGQK--VKPTKELYITKSTGTPFVEGEPSQ 467
A + +I LD L + DL G + + YITK T +
Sbjct: 403 TAKPMLAIDLSELDKDDMVLNTPEATYDLRIGLSGSHEHDPKDYITKMTTVSPGDQGMGL 462
Query: 468 EFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527
L + + +E++DY +GMA +G + I G G +GKST N I G+
Sbjct: 463 WQETLATFFCNDQELIDYVQEIIGMAAIGKVYQEHMIIAYGGGANGKSTFWNTIARVLGS 522
Query: 528 QYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCM 587
Y A + + +P L L G R+VI SE E +N A +KQ+T D +
Sbjct: 523 -YSGKLSADALTMSNKR---NVSPELAELKGKRLVIASEMAEGMRLNTAVVKQITSTDEI 578
Query: 588 TARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQ 645
A Y + + P S T + N V DD WRR +VIPF+ I R +FA
Sbjct: 579 QAEKKYKDPFHFVP-SHTLVLYTNHLPKVGANDDGTWRRLVVIPFNAKITGRSDIKNFAD 637
Query: 646 KLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE 705
L W ++G + I +P + + R+ D ++ +CC++G+
Sbjct: 638 YLYDHAAPAIMSWIIEGAEKAIKANFKTKVPAAVANSVKVYREANDWLGHFLSECCEVGD 697
Query: 706 NLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRI 765
L E+S L Y Y Q + Y R +T L Q GF K
Sbjct: 698 KLSEKSGELYSRYRAYCVQNMEYTR---NTTDFYAALAQAGFE--------RKRTNKGNF 746
Query: 766 IKGLKLKPAFESVDDNSNIID 786
I GLKL DD + +D
Sbjct: 747 IMGLKL------ADDGDDFLD 761
>gi|296447833|ref|ZP_06889745.1| phage/plasmid primase, P4 family [Methylosinus trichosporium OB3b]
gi|296254633|gb|EFH01748.1| phage/plasmid primase, P4 family [Methylosinus trichosporium OB3b]
Length = 892
Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats.
Identities = 125/650 (19%), Positives = 227/650 (34%), Gaps = 94/650 (14%)
Query: 178 QEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVH 237
++ K+ + T + R ++ + + L G + WI + A++
Sbjct: 273 RDARGADDDPKRGQSAALTPIFTDPRYDKSKVVWSALEAIGNK--GIERKPWIKIGAALY 330
Query: 238 HETRGSSKGKEIARRWSK--QGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHG 295
E GS++G+E+ W+ + E W F + G + K T L Y G
Sbjct: 331 VEFGGSAEGEELFEDWTALREEGNVKPEKDAASWRNFRGDRPGGSTGK--TIRDLAYKAG 388
Query: 296 KLIPKGLLA------------------SRFS----------------------------- 308
RF
Sbjct: 389 WSPDAAGFLDYEWSDGWTDKPDIVFEDERFKAALAVIPSCRALADEGDEGDAVAPNAVAE 448
Query: 309 --------DAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLV 360
D YN + F+ + L+ ++ + D W +
Sbjct: 449 LGFSGAGGDLYNGSTFANLYRDRLLFIHESGDVLRFDCEGG--WLAAAPGTAERAAKAVA 506
Query: 361 SMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSD 420
+ +D + + + + + + + + +
Sbjct: 507 GILKDQATEAA-----------------HYQHLKKLCDARAQHAMIEMARSEPGMTRSLA 549
Query: 421 LLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESE 480
D + LG +G+LDL +G+ + + ++ ++K F F+ + +
Sbjct: 550 DFDDNPMMLGVANGVLDLRSGRLLPMSPDVLVSKRCNVAFDPDAECPSFIRFLVEVQPDD 609
Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540
E+ R VG L G Q F G G +GKS + L+ + G+ Y + +MQ
Sbjct: 610 EIRACVKRFVGYCLTGDVSEQVFAFFHGGGNNGKSAFIELLAWLLGD-YALKIPTEMLMQ 668
Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600
++ G +P ++ L G R++ +ET E + A++K +TGGD +T R +
Sbjct: 669 HQRNPQG-PSPDIVALKGRRLIYANETEEGRRLADARVKDLTGGDTLTGRAPHAMAAICF 727
Query: 601 PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK--PIANRDASFAQKLETKYTLEAKKW 658
S IV N + + WRR ++P+ K P RD QKL + W
Sbjct: 728 RPSHKLVIVGNHKPAISDTSSGMWRRVALVPWTKTVPPEKRDRHLVQKLMRE-GSGVLNW 786
Query: 659 FLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSY 718
L G++ + GL IP+ A R+ D W+DD C+ G L+E+ SY
Sbjct: 787 ALDGLRDWREHGLM--IPDAIKDATASYREDEDILGDWLDDECESGRGLFEKKIHAYASY 844
Query: 719 SEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEK----EWKSKR 764
E+ E N + ++ +T T L ++GF G R + +W+S+R
Sbjct: 845 REWAESNGN---RPLANKTFTRRLTERGFPLGRDRRTFQGFALTDWRSRR 891
>gi|17547948|ref|NP_521350.1| hypothetical protein RSc3229 [Ralstonia solanacearum GMI1000]
gi|17430254|emb|CAD17017.1| putative bacteriophage-related protein [Ralstonia solanacearum
GMI1000]
Length = 759
Score = 389 bits (999), Expect = e-105, Method: Composition-based stats.
Identities = 111/521 (21%), Positives = 183/521 (35%), Gaps = 50/521 (9%)
Query: 260 YDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYN-----KA 314
Y E WD D G H + + +
Sbjct: 268 YPPEEAGEGWDAADAVAEGFDIAAFIAHGPRLQMHDVVDDPEPVIGSDESVWGTEDALAL 327
Query: 315 MFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPE 374
F+ + Y A W D + W T + + + ++ +E P
Sbjct: 328 AFTRRYHRDWRYVAAWGRWLVWDG---HRWRTED---TLAATDLIRNVCRHAALHAENPR 381
Query: 375 DNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDG 434
K + + + A + T+ D+ L G
Sbjct: 382 LAAK-----------------LATSGTIAGVERLARADRRHAATTSEWDADPWLLNTPGG 424
Query: 435 ILDLETGQKVKPTKELYITK-STGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMA 493
++DL TG++ ++ +TK +T TP + ++FL V+G E+ Y R G A
Sbjct: 425 VVDLRTGRQRPHDRDDRMTKITTATPVGDCPTWRQFLAEVTG--GDVELQAYLQRMAGYA 482
Query: 494 LLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL 553
L G + + G G +GKS +N + G+ Y NA M+ R A + +
Sbjct: 483 LTGSTQEHALFFLYGTGANGKSVFVNTLATILGD-YAANAAMDTFMETR---ADRHPTDM 538
Query: 554 IRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKH 613
L G+R V ET + +K+K +TGGD ++AR + + P F F+ N
Sbjct: 539 AGLRGARFVAAIETEQGRRWAESKVKNLTGGDKISARFMRQDFFEFFP-QFKLFVAGNHK 597
Query: 614 LFVRNPDDAWWRRYIVIPF--DKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGL 671
+RN D+A RR +IPF P RD QKL + W ++G + G
Sbjct: 598 PAIRNIDEAMKRRLHLIPFTVTVPPERRDKHLQQKLLAER-DGILAWAVQGCLDWQRLG- 655
Query: 672 DVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRK 731
+D P+ L A EE + D W+D+ C N + L + ++ E +
Sbjct: 656 RLDPPQQVLDATEEYFEAEDALGRWLDERCVREANAKSLTAELFNDWKQWAEAAGEFAG- 714
Query: 732 RISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLK 772
S + L +G + R +G+ LK
Sbjct: 715 --SQKRFADLLLTRGVEKW-------RNTAGLRGFRGVGLK 746
>gi|197303501|ref|ZP_03168540.1| hypothetical protein RUMLAC_02223 [Ruminococcus lactaris ATCC
29176]
gi|197297499|gb|EDY32060.1| hypothetical protein RUMLAC_02223 [Ruminococcus lactaris ATCC
29176]
Length = 738
Score = 389 bits (999), Expect = e-105, Method: Composition-based stats.
Identities = 117/566 (20%), Positives = 199/566 (35%), Gaps = 44/566 (7%)
Query: 240 TRGSSKGKEIARRWSKQ-GSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLI 298
+ K E +++ + W++ + Y+
Sbjct: 191 YGDTEKAHEAFLEHARKCDPPLPDSELKSIWNSAVKFYRKSIVTQDGYVPPEEYNAD-FE 249
Query: 299 PKGLLASRFSDAYNKAMFSIYKKGHFLY-------TADTKAWYKKDKNNVYIWSLTLDKI 351
L +SD + Y D + W + + + LD
Sbjct: 250 GATLKPEDYSDIGQAKILVREYGEELKYTSATDFLRFDGECWREDKQLAIGAVEEFLDLQ 309
Query: 352 TASIMNFLVSMKEDVFDLSEEPEDNNKNSKSP-------------RFWFNTDYRRQNVEE 398
M+ + +++ + D K Y + +
Sbjct: 310 LQDAMDEVARVEKALEDAGVPKASIQAGPKELLKEVDGQLLPLVYMLMGAQTYLKFVQKR 369
Query: 399 NSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQK--VKPTKELYITKST 456
+ + A + +I+ LD + DL G ITK T
Sbjct: 370 RDYKYIVSAANTAKPMIAISVSDLDKDENLINTPYATFDLRKGLAGEQPHDPGDLITKIT 429
Query: 457 GTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKS 515
E E Q +LD + +F + ++++DY VGMA +G + I G G +GKS
Sbjct: 430 ACSPGE-EGKQIWLDALKLFFCKDQKLIDYVQETVGMAAIGKVYQEHMIIAYGGGANGKS 488
Query: 516 TLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA 575
T N I GN Y A + N P + L G R++I SE E +N
Sbjct: 489 TFWNTIFRVLGN-YAGKLSAEALTMNCKR---NVKPEMAELKGKRLIISSEMEEGMRLNT 544
Query: 576 AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP 635
A +KQ+ D + A Y + +S P S T + N V DD WRR IVIPF+
Sbjct: 545 AVVKQLCSTDEIQAEKKYKDPFSFVP-SHTLVLYTNHLPKVGANDDGIWRRLIVIPFNAK 603
Query: 636 IANR--DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTY 693
I + ++A L W ++G K I K D+P+V A + R+ D
Sbjct: 604 ITGKSDIKNYADYLFEHAGPAIMSWIIEGAKKAIDKEFHTDLPDVVEAAIKAYREDNDWL 663
Query: 694 QAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKR 753
++++CC++ + E+S L ++Y + Q Y R ST ++ + G+ K
Sbjct: 664 GQFLEECCEMDPSYKEKSGELYQAYRAHCMQNGEYIR---STTDFYSSMDKAGYNRIRKN 720
Query: 754 EKIEKEWKSKRIIKGLKLKPAFESVD 779
++ + GLKLK + ++
Sbjct: 721 TGVQ--------VVGLKLKEGQDFLN 738
>gi|317501095|ref|ZP_07959301.1| prophage protein [Lachnospiraceae bacterium 8_1_57FAA]
gi|316897482|gb|EFV19547.1| prophage protein [Lachnospiraceae bacterium 8_1_57FAA]
Length = 757
Score = 389 bits (998), Expect = e-105, Method: Composition-based stats.
Identities = 118/572 (20%), Positives = 199/572 (34%), Gaps = 58/572 (10%)
Query: 240 TRGSSKGKEIARRWSKQG-STYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLI 298
+ K + + D N W + + + Y+
Sbjct: 210 YGDTEKAYQSFLEKAATCVPPLDNSELNTIWHSAQ-RFYSKISHEDGYVPPEVYNDE--- 265
Query: 299 PKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITA----- 353
FSD + S Y Y+ T + + + W T A
Sbjct: 266 -NSYKPEDFSDVGQAEVLSKYFANELRYSPAT----HFIRYSDHYWQETEPGAQAVAHEL 320
Query: 354 -------------SIMNFLVS------MKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQ 394
+ L + + +E+ + + F Y+
Sbjct: 321 TRRQLAEANRNMMEALQKLKNCGAQEILDNTSKAKAEQLMSDEQMEAYQEFLAAKAYQSF 380
Query: 395 NVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQK--VKPTKELYI 452
V T+ E + I+ LD+ L + DL G + + + +I
Sbjct: 381 AVRRRDSKNITSTLKETHPMLEISPRDLDADCFLLCTPEATYDLRKGMAGAREHSADDFI 440
Query: 453 TKSTGT-PFVEGEPSQEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVG 510
TK T P +G Q + D + F+ ++++DY G+A +G + I G G
Sbjct: 441 TKITSVSPGSKGA--QLWQDNLDLIFQKDQQLIDYVQMICGLAAIGKVFVEALIIAYGDG 498
Query: 511 GSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN 570
+GKST N I G Y N A + P + + G R++I +E E
Sbjct: 499 RNGKSTFWNAISRVLG-LYSGNISADTLTVGCRRNI---KPEMAEVKGKRLLIAAEMQEG 554
Query: 571 DEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVI 630
+N + +KQ+ D + A Y + +S P T + N V DD WRR IVI
Sbjct: 555 ARLNDSTVKQLCSTDDVFAEKKYKDPFSFKPC-HTLVLYTNHLPRVSASDDGIWRRLIVI 613
Query: 631 PFDKPIANR--DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQ 688
PF+ I + ++ + L W ++G K I+ + +P+ KA +E R
Sbjct: 614 PFNAKIEGKADIKNYGEYLYENAGESILAWIIEGAKKVIALDYQIPVPDCVTKAIDEYRS 673
Query: 689 GTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFI 748
D + ++D+ CD+ E+ E S +L ++Y Y Y R ST L++ GF
Sbjct: 674 QNDWFGHFLDEKCDVDESFKESSSALYQAYRNYSLDCNEYVR---STADFYFALEKAGFE 730
Query: 749 GGIKREKIEKEWKSKRIIKGLKLKPAFESVDD 780
KR KGLK+ + +D
Sbjct: 731 --------RLTLNRKRYFKGLKIHEDSGAEED 754
>gi|325526291|gb|EGD03902.1| P4 family phage/plasmid primase [Burkholderia sp. TJI49]
Length = 548
Score = 389 bits (998), Expect = e-105, Method: Composition-based stats.
Identities = 101/483 (20%), Positives = 181/483 (37%), Gaps = 36/483 (7%)
Query: 305 SRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLD-KITASIMNFLVSMK 363
+D N S + Y +TK W + K + +W + + + + +
Sbjct: 57 MHTTDLGNAERMSELYRETLRYVCETKQWLE--KQDSGVWQRVDELHVLSLARKLIALIY 114
Query: 364 EDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLD 423
E++F LS P + Q E N+ K+ + ++++ LD
Sbjct: 115 EEMFLLS------------PGNRQSMAMHAQYTESNTGLKNAVDLFRSEPGIALSAKDLD 162
Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEV 482
L ++G++DL++G +L+IT + + + + +
Sbjct: 163 CGDWLLPVRNGLIDLQSGTFTPMRPDLHITYTAAVDYDPNATCPIWEGFLLQIMNGDVAL 222
Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542
++Y R +G L G G +GKST +N+++ FG+ A +++
Sbjct: 223 VEYLRRAIGYTLTTMTSEHALFFAYGSGANGKSTFLNVLRALFGDLGA-QANGDMLLEKN 281
Query: 543 PPEA---GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599
A+ + RLMG R+V +SE + + +K TGG+ +TAR+ Y N +
Sbjct: 282 GAGGMSQNAASSEVARLMGKRLVAMSEVEDGRHFSEKTVKWYTGGEVITARMLYQNAFEF 341
Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKK 657
P F ++ N V+ D WRR +IPF I RD +KL +
Sbjct: 342 KPR-FKLWLAGNYKPTVKGSDHGIWRRMKLIPFTVTIPPEERDPDLERKLCEEL-PGILN 399
Query: 658 WFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKS 717
W L G + + G ++ P V E R D +W+ + K
Sbjct: 400 WALAGCRQWRENGYKLNEPNVIASEVAEYRSEMDVVHSWLSEFTRDDPEGEIHFGDTYKF 459
Query: 718 YSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFES 777
+ + E + N+ S + LK KG+ K R+ KGL+L E
Sbjct: 460 FKSWSESQYNFS---YSGNKLGRILKDKGYAAA---------SKPHRVYKGLRLIVDLEF 507
Query: 778 VDD 780
++
Sbjct: 508 NEN 510
>gi|222112386|ref|YP_002554650.1| hypothetical protein Dtpsy_3221 [Acidovorax ebreus TPSY]
gi|221731830|gb|ACM34650.1| phage/plasmid primase, P4 family [Acidovorax ebreus TPSY]
Length = 760
Score = 388 bits (997), Expect = e-105, Method: Composition-based stats.
Identities = 113/521 (21%), Positives = 185/521 (35%), Gaps = 50/521 (9%)
Query: 260 YDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYN-----KA 314
Y E WD D G T H + S +
Sbjct: 269 YPPEEAAEGWDVADAIAEGFDVATFLTHGPRLQMHDVADDVDPVVSSDESVWGTEDALAL 328
Query: 315 MFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPE 374
F+ + Y A W D W T + + + S+ ++ P+
Sbjct: 329 SFTRRYHRDWRYVAGWGKWLVWDGQR---WRTED---TLAATDLIRSVCRQTAVRADNPK 382
Query: 375 DNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDG 434
K + S + A + T+D D+ L G
Sbjct: 383 VAAK-----------------LASASTVGGVERLARADRRHAATTDEWDADPWLLNTPGG 425
Query: 435 ILDLETGQKVKPTKELYITK-STGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMA 493
++DL+TG+ + +TK +T TP + ++F+D V+G +E+ Y R VG A
Sbjct: 426 VVDLKTGRMRPHERADRMTKITTATPSGDCPTWKQFIDEVTG--GDKELQSYLQRMVGYA 483
Query: 494 LLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL 553
L G + + G G +GKS +N + G+ Y NA M+ R + +
Sbjct: 484 LTGSTQEHALFFLYGTGANGKSVFVNTLATILGD-YATNAPMDTFMETR---TDRHPTDM 539
Query: 554 IRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKH 613
L G+R V ET + +K+K +TGGD ++AR + + P F F+ N
Sbjct: 540 AGLRGARFVAAIETEQGKRWAESKLKNLTGGDKISARFMRQDFFEFFP-QFKLFVAGNHR 598
Query: 614 LFVRNPDDAWWRRYIVIPF--DKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGL 671
+RN D+A RR +IPF P RD + QKL + W ++G + G
Sbjct: 599 PAIRNIDEAMKRRLHLIPFTITVPPERRDKNLQQKLLAER-DGILAWAVQGCLDWQRHG- 656
Query: 672 DVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRK 731
+ P+ + A EE + D W+D+ C N + L + + E +
Sbjct: 657 RLSPPQRVVDATEEYFEAEDALGRWLDERCVREANAKSLTAELFNDWKPWAEAAGEFTG- 715
Query: 732 RISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLK 772
S + L +G + R +G+ LK
Sbjct: 716 --SQKRFADLLLNRGLDKW-------RNGMGLRGFQGIGLK 747
>gi|313114054|ref|ZP_07799607.1| nucleoside triphosphatase, D5 family [Faecalibacterium cf.
prausnitzii KLE1255]
gi|310623624|gb|EFQ07026.1| nucleoside triphosphatase, D5 family [Faecalibacterium cf.
prausnitzii KLE1255]
Length = 799
Score = 387 bits (995), Expect = e-105, Method: Composition-based stats.
Identities = 133/753 (17%), Positives = 243/753 (32%), Gaps = 56/753 (7%)
Query: 19 KLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDID-SKDEKT 77
+ P + +P W + + + G G + G G L DID +D T
Sbjct: 24 PINPATGQNAKPNDPATWGTLEAAQAAVSRFGLRGVGVLLGDG---LCGIDIDHCRDPDT 80
Query: 78 ANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVA 137
EI+ G + G K + L++ G+YF
Sbjct: 81 GVLSDMAREIIDGMQTYAEESPSGTGVHLLFT--GQKPAGACRKSSIGLEMYDGGRYFTV 138
Query: 138 YN-------IHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKS 190
I +T + + + + +E+ +
Sbjct: 139 TGKALNDLAIEERTAQCAAVHAKYLAKPEAPWVPAPAGVWQKVDRSDEELLRTACAARDG 198
Query: 191 IIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSS------ 244
+ + + Y + C F+ G+ E + H R S
Sbjct: 199 ERFAALYAGDWQAYYNSHSEADLSFCNLLAFWFGADVE------RMDHVFRTSGLMRPKW 252
Query: 245 ---KGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHH--GKLIP 299
+G + RW+ + + D + D D + +
Sbjct: 253 DERRGAKTYGRWTLERAVSDCQEVYTPSPEPDKTPFADQDEALRALNVKYGTQSPAAAPA 312
Query: 300 KGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFL 359
G+ D N F Y K W D W A+I
Sbjct: 313 PGVKTYSLDDTGNARRFRDRYADRVRYNPTDKCWMVWDGAR---WKRDD---LATIKGLA 366
Query: 360 VSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITS 419
M + + D N R + R + + + K +
Sbjct: 367 DEMLDQMDKACFGIRDINTAGALRRHVQKS---RSSRSKEAFLKEAQHL----PGIPMLP 419
Query: 420 DLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE- 478
+ D + L ++GIL+L + V + YIT+ + + + +
Sbjct: 420 EQFDRNKGLLNLRNGILNLARRELVPHDRARYITRMAQVDYDPAAQAPVWEAFIQSVTGG 479
Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538
++ +Y VG L G + Q + G G +GKST + + G+ Y +NA+A I
Sbjct: 480 DAQLAEYLQVMVGYCLCGSTREQCMFFLYGDGANGKSTFLETLAKMLGD-YCMNAQADTI 538
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598
R +G A + RL G+R V + E ++ ++ +KQMTGG+ +TAR YG +
Sbjct: 539 ASTRSRSSGAARSDVARLKGARFVTLEEGDQGATLDEGLVKQMTGGNTITARFQYGKEFE 598
Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDASFAQKLETKYTLEAK 656
P F N + D WRR ++PF + I +D QKLE +
Sbjct: 599 FRP-EFKLVEATNHLPKIHGTDVGIWRRIRLVPFTQSIPEEKQDILLPQKLEAEL-PGIL 656
Query: 657 KWFLKGVKAYISK-----GLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEES 711
W L G++ +++ + A +Q D A++ DC + E ++
Sbjct: 657 NWALDGLQKWLANSQGGRRHGLPACAAVDSAVSAYKQDQDRIAAFLADCTEPAEGSTVQA 716
Query: 712 HSLAKSYSEYREQELNYDRKRISTRTVTLNLKQ 744
L ++Y + + + R++ + + +K+
Sbjct: 717 SVLFRTYLNWCSENNE--KWRMANKQFGMEVKK 747
>gi|50914497|ref|YP_060469.1| Phage DNA polymerase [Streptococcus pyogenes MGAS10394]
gi|40218553|gb|AAR83207.1| hypothetical phage protein [Streptococcus pyogenes]
gi|50261598|gb|AAT72366.1| ATPase [Streptococcus pyogenes]
gi|50903571|gb|AAT87286.1| Phage DNA polymerase [Streptococcus pyogenes MGAS10394]
Length = 761
Score = 387 bits (995), Expect = e-105, Method: Composition-based stats.
Identities = 138/666 (20%), Positives = 232/666 (34%), Gaps = 68/666 (10%)
Query: 161 DTPLLSEEDVEYLFKFFQEITVPLVK-----DKKSIIPSKTWTNNNNRQYTNREITAFLS 215
D + +E++ +KFF + + +I +W + + I
Sbjct: 124 DIYVAMKEELCNQYKFFDDHAKDAARFFFGNPNAQVIWHDSWLTIDEDLFQVVSIED-EE 182
Query: 216 CFGEEFY--------NGSHDEWIPVVMA-VHHETRGSSKGKEIARRWSKQG-STYDEENF 265
F +FY GS + + V A + + + ++ +++ D+
Sbjct: 183 DFDADFYTPPSGPIQQGSRNSTMSVFAAKILKRLGVTQEARDGFDEQAQKCVPPLDKAEL 242
Query: 266 NYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFL 325
+ W + +S ++ L P +SD + +
Sbjct: 243 DTIWGSAVRFYNRTIKTSKSYVAPDAFNRETLKPDD-----YSDVGEAGVLAREYANKLA 297
Query: 326 YT-------ADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEP----- 373
YT D W + + + D+ A + L S + + +
Sbjct: 298 YTNATDYLYYDGTHWRENKQLALGAVVHFTDEQLAEAIALLESADKQLQSSGIDELTIKA 357
Query: 374 ---------EDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDS 424
E + + ++ + ++ A A I S+ LDS
Sbjct: 358 GGKRLENAVETPLQLKYLKAYLAAKEFHKFVMKHRDYKNLMAVYNTAKPILSVELSELDS 417
Query: 425 SSRFLGEQDGILDLETGQ--KVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEV 482
L + DL G + + E YITK T + L + + +E+
Sbjct: 418 DDLLLNTPEATYDLRKGINGQQEHNPEDYITKITAVSPSDQGMGLWQETLATFFCNDQEL 477
Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542
+DY +GMA +G + I G G +GKST N I G+ Y A + +
Sbjct: 478 IDYVQEIIGMAAIGKVYQEHMIIAYGGGANGKSTFWNTIARVLGS-YSGKLSADALTMSN 536
Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602
+P L L G R+VI SE E +N A +KQ+T D + A Y + + P
Sbjct: 537 KR---NVSPELAELKGKRLVIASEMAEGMRLNTAVVKQITSTDEIQAEKKYKDPFHFVP- 592
Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAKKWFL 660
S T + N V DD WRR +VIPF+ I R +FA L W +
Sbjct: 593 SHTLVLYTNHLPKVGANDDGTWRRLVVIPFNAKITGRSDIKNFADHLYDNAAPAIMSWII 652
Query: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSE 720
+G + I ++P + + R+ D ++ DCC +G+ L E+S L Y
Sbjct: 653 EGAEKAIKANFKTNVPTAVSSSVKAYREANDWLGHFLGDCCQVGDQLSEKSGELYSQYRA 712
Query: 721 YREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDD 780
Y + + Y R ST L+Q GF K I GLKL V+D
Sbjct: 713 YCAKNMEYTR---STTDFYSALEQAGF--------KRKRTSKGNHILGLKL------VED 755
Query: 781 NSNIID 786
+ +D
Sbjct: 756 GYDFLD 761
>gi|260161779|emb|CAZ39323.1| phage DNA polymerase [Streptococcus suis]
gi|313575361|emb|CBR26890.1| hypothetical protein [Streptococcus phage phi-SsUD.1]
Length = 761
Score = 387 bits (995), Expect = e-105, Method: Composition-based stats.
Identities = 136/666 (20%), Positives = 229/666 (34%), Gaps = 68/666 (10%)
Query: 161 DTPLLSEEDVEYLFKFFQEITVPLVK-----DKKSIIPSKTWTNNNNRQYTNREITAFLS 215
D + +E++ +KFF + + +I +W + + I
Sbjct: 124 DIYVAMKEELCNQYKFFDDHAKDAARFFFGNPNAQVIWHDSWLTIDEDLFQVVSIED-EE 182
Query: 216 CFGEEFY--------NGSHDEWIPVVMA-VHHETRGSSKGKEIARRWSKQG-STYDEENF 265
F +FY GS + + V A + + + ++ +++ D+
Sbjct: 183 DFDADFYTPPSGPIQQGSRNSTMSVFAAKILKRLGVTQEARDGFDEQAQKCVPPLDKIEL 242
Query: 266 NYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFL 325
+ W + + ++ L P +SD + +
Sbjct: 243 DTIWGSAVRFYNRTIKTSKGYVAPDVFNRETLKPDD-----YSDVGEAGVLAREYGNRLA 297
Query: 326 YT-------ADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEP----- 373
YT D W + + + D+ A L S + + +
Sbjct: 298 YTNATDYLYYDGTHWRENKQLALGAVVHFTDEQLAEANALLESADKQLQSSGIDELTIKA 357
Query: 374 ---------EDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDS 424
E + + ++ + ++ A A + S+ LDS
Sbjct: 358 GGKRLENAVETPLQLKYLKAYLAAKEFHKFVMKHRDYKNLMAVYNTAKPMLSVELSELDS 417
Query: 425 SSRFLGEQDGILDLETGQ--KVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEV 482
L + DL G + + E YITK T + L + + +E+
Sbjct: 418 DDLLLNTPEATYDLRKGINGQQEHNPEDYITKITAVSPSDQGMGLWQETLATFFCNDQEL 477
Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542
+DY +GMA +G + I G G +GKST N I G+ Y A + +
Sbjct: 478 IDYVQEIIGMAAIGKVYQEHMIIAYGGGANGKSTFWNTIARVLGS-YSGKLSADALTMSN 536
Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602
+P L L G R+VI SE E +N A +KQ+T D + A Y + + P
Sbjct: 537 KR---NVSPELAELKGKRLVIASEMAEGMRLNTAVVKQITSTDEIQAEKKYKDPFHFVP- 592
Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAKKWFL 660
S T + N V DD WRR +VIPF+ I R +FA L W +
Sbjct: 593 SHTLVLYTNHLPKVGANDDGTWRRLVVIPFNAKIIGRSDIKNFADYLYDNAAPAIMSWII 652
Query: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSE 720
+G + I +P + + R+ D ++ DCC +G+ L E+S L Y
Sbjct: 653 EGAEKAIKANFKTKVPTAVSASVKAYREANDWLGHFLSDCCQVGDQLTEKSGELYSQYRA 712
Query: 721 YREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDD 780
Y + + Y R ST L+Q GF K I GLKL V+D
Sbjct: 713 YCTKNMEYTR---STTDFYSALEQAGF--------KRKRTSKGNFILGLKL------VED 755
Query: 781 NSNIID 786
+ +D
Sbjct: 756 GYDFLD 761
>gi|294817426|ref|ZP_06776068.1| Putative DNA primase/helicase [Streptomyces clavuligerus ATCC
27064]
gi|294322241|gb|EFG04376.1| Putative DNA primase/helicase [Streptomyces clavuligerus ATCC
27064]
Length = 532
Score = 387 bits (994), Expect = e-105, Method: Composition-based stats.
Identities = 101/483 (20%), Positives = 186/483 (38%), Gaps = 35/483 (7%)
Query: 300 KGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFL 359
G+L SD N +F F + WY+ N Y W L D +
Sbjct: 74 HGVLPDSLSDRGNAKLFVSLYGRDFRHVP-GLGWYRW---NKYRWDLDEDDGVMWAAGEM 129
Query: 360 VSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITS 419
M + + +S R + + K+ +A ++
Sbjct: 130 AEMLAE-----TDIRGRFTDSALRRHR-------RRALSTAGIKAMLAQAKAAPGMVLSP 177
Query: 420 DLLDSSSRFLGEQDGILDLETGQKVKPTKE-LYITKSTGTPFVEGEPSQEFLDLVSGYFE 478
+LD+ L +G++DL TG P E Y ++ST + + ++ F
Sbjct: 178 SMLDADPYALCTPEGVIDLTTGAVTPPDPEKHYHSRSTSVAARPRA-TPRWKRFLADCFG 236
Query: 479 S----EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
EE++D+ +G ++ G AQ + G G +GKS L++++ G+ Y A
Sbjct: 237 DDAEGEEMIDFLHELLGYSITGDVGAQVLPFLYGQGKNGKSVLLDVMVKLLGD-YADAAP 295
Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
+M L L G RI++ SE D + A++K +TGGD + AR
Sbjct: 296 PGFLMARPFE---GHPTDLAELHGRRIIVCSELKPGDRFDEARVKLLTGGDRIKARRMRQ 352
Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDASFAQKLETKYT 652
+ +S P + +++ N V A+WRR ++PF++ + + + + A L T+
Sbjct: 353 DFFSFGP-THKLWLLGNHRPEVGTGGYAFWRRMKLLPFERVVDDDRKVDNLADVLVTEEG 411
Query: 653 LEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESH 712
W ++G + Y++ D+ PE A + D ++ +CC +G ++ E
Sbjct: 412 PGILNWLVEGSRRYLTGPRDLTGPERVRTATTAYAETEDHTGRFLSECCTVGPSMRAEQT 471
Query: 713 SLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLK 772
L SY ++ + E ++R ++ GI K ++ G+ L
Sbjct: 472 LLYASYRDWCQLEGAN---PATSRAFAARVRD---TVGISSPKEMILSNQRKFYPGIGLN 525
Query: 773 PAF 775
Sbjct: 526 AEM 528
>gi|326446240|ref|ZP_08220974.1| putative DNA primase/helicase [Streptomyces clavuligerus ATCC
27064]
Length = 507
Score = 387 bits (994), Expect = e-105, Method: Composition-based stats.
Identities = 101/483 (20%), Positives = 185/483 (38%), Gaps = 35/483 (7%)
Query: 300 KGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFL 359
G+L SD N +F F + WY+ N Y W L D +
Sbjct: 49 HGVLPDSLSDRGNAKLFVSLYGRDFRHVP-GLGWYRW---NKYRWDLDEDDGVMWAAGEM 104
Query: 360 VSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITS 419
M + + +S R + K+ +A ++
Sbjct: 105 AEMLAE-----TDIRGRFTDSALRRHRRR-------ALSTAGIKAMLAQAKAAPGMVLSP 152
Query: 420 DLLDSSSRFLGEQDGILDLETGQKVKPTKE-LYITKSTGTPFVEGEPSQEFLDLVSGYFE 478
+LD+ L +G++DL TG P E Y ++ST + + ++ F
Sbjct: 153 SMLDADPYALCTPEGVIDLTTGAVTPPDPEKHYHSRSTSVAARPRA-TPRWKRFLADCFG 211
Query: 479 S----EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
EE++D+ +G ++ G AQ + G G +GKS L++++ G+ Y A
Sbjct: 212 DDAEGEEMIDFLHELLGYSITGDVGAQVLPFLYGQGKNGKSVLLDVMVKLLGD-YADAAP 270
Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
+M L L G RI++ SE D + A++K +TGGD + AR
Sbjct: 271 PGFLMARPFE---GHPTDLAELHGRRIIVCSELKPGDRFDEARVKLLTGGDRIKARRMRQ 327
Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDASFAQKLETKYT 652
+ +S P + +++ N V A+WRR ++PF++ + + + + A L T+
Sbjct: 328 DFFSFGP-THKLWLLGNHRPEVGTGGYAFWRRMKLLPFERVVDDDRKVDNLADVLVTEEG 386
Query: 653 LEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESH 712
W ++G + Y++ D+ PE A + D ++ +CC +G ++ E
Sbjct: 387 PGILNWLVEGSRRYLTGPRDLTGPERVRTATTAYAETEDHTGRFLSECCTVGPSMRAEQT 446
Query: 713 SLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLK 772
L SY ++ + E ++R ++ GI K ++ G+ L
Sbjct: 447 LLYASYRDWCQLEGAN---PATSRAFAARVRD---TVGISSPKEMILSNQRKFYPGIGLN 500
Query: 773 PAF 775
Sbjct: 501 AEM 503
>gi|227875063|ref|ZP_03993208.1| phage-associated protein [Mobiluncus mulieris ATCC 35243]
gi|304390306|ref|ZP_07372259.1| P4 family prophage LambdaSa04 [Mobiluncus curtisii subsp. curtisii
ATCC 35241]
gi|306817350|ref|ZP_07451095.1| P4 family prophage LambdaSa04 protein [Mobiluncus mulieris ATCC
35239]
gi|227844341|gb|EEJ54505.1| phage-associated protein [Mobiluncus mulieris ATCC 35243]
gi|304326062|gb|EFL93307.1| P4 family prophage LambdaSa04 [Mobiluncus curtisii subsp. curtisii
ATCC 35241]
gi|304649791|gb|EFM47071.1| P4 family prophage LambdaSa04 protein [Mobiluncus mulieris ATCC
35239]
Length = 753
Score = 387 bits (994), Expect = e-105, Method: Composition-based stats.
Identities = 114/565 (20%), Positives = 206/565 (36%), Gaps = 51/565 (9%)
Query: 240 TRGSSKGKEIARRWSKQ-GSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLI 298
+ + +++ R + +E W++ ++ S
Sbjct: 213 YGQTDQARDLFDRKANLCEPPLNEGELQTIWNS--ACRFASKV---ASDPSYLPPEAYEA 267
Query: 299 PKGLLASRFSDAYNKAMFSIYKKGHFLY-------TADTKAWYKKDKNNVYIWSLTLDKI 351
GL FSD + Y D W + D + + +
Sbjct: 268 LAGLRPDDFSDVGQADTLAGEYANKIRYSLATKWLVYDHGVWDENDLSAQGVVQELTSRQ 327
Query: 352 TASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWF--------------NTDYRRQNVE 397
+ + + +D+ + + +SK+ + Y + +
Sbjct: 328 LEEAQHLIATTWQDMVSTGADVVMASASSKARGLAKLNPAQVAAFKAWDESKSYHKFVLS 387
Query: 398 ENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTG 457
TA EAG I + LD L G DL + +TK T
Sbjct: 388 RRLSRNITATLKEAGPILQVRVRDLDVDPYQLNTPAGTWDLRDSSSHEHNPADLLTKQTA 447
Query: 458 T-PFVEGEPSQEFLDLVSGYFESE-EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKS 515
P EG Q + D + +F+ + E++ Y R VG+A +G + + G G +GKS
Sbjct: 448 VGPSDEGA--QIWADALDVFFQGDVELIGYVQRIVGLAAIGQVFVEALVIAYGDGRNGKS 505
Query: 516 TLMNLIKYAFGNQY-VINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEIN 574
T N I G I+A+A + R P L G R++I +ET E ++
Sbjct: 506 TFWNTIARVLGTYSGTISADALTVGVRR-----NVKPELAEARGKRLLIAAETEEGMRLS 560
Query: 575 AAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK 634
+ +KQ+ D ++A + + ++ +P S T + N V D WRR IVIPF+
Sbjct: 561 TSNVKQLASTDQISAEKKFKDPFAFTP-SHTLVLYTNHLPRVGAMDAGIWRRLIVIPFNA 619
Query: 635 PIA-NRD-ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDT 692
I + D ++A L W ++G + S+G + P ++A + ++ D
Sbjct: 620 TIEGDTDVKNYADHLYEHAGGAILSWIMEGARLIHSEGYKLTPPPQVVQASQAYKEDNDW 679
Query: 693 YQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIK 752
+ +++D CD+ + L E + L ++Y + + + R + +Q GF
Sbjct: 680 FSQFLEDSCDVEDGLSERAGDLYQTYRAWAQNTSGWARPMV---DFNAACEQAGFE---- 732
Query: 753 REKIEKEWKSKRIIKGLKLKPAFES 777
K+ KS + GL L F S
Sbjct: 733 ----RKKTKSGIRVYGLALTSEFNS 753
>gi|118579792|ref|YP_901042.1| P4 family phage/plasmid primase [Pelobacter propionicus DSM 2379]
gi|118502502|gb|ABK98984.1| phage/plasmid primase, P4 family [Pelobacter propionicus DSM 2379]
Length = 524
Score = 385 bits (989), Expect = e-104, Method: Composition-based stats.
Identities = 104/471 (22%), Positives = 181/471 (38%), Gaps = 40/471 (8%)
Query: 305 SRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLT-LDKITASIMNFLVSMK 363
+F+D F+ + Y +++ W D W+ I L ++
Sbjct: 71 DQFTDLRLSERFAAMFRDQLRYWSESGKWLAFDGRR---WTTDAPGGGFPFIRELLKNLY 127
Query: 364 EDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLD 423
S+ + + + RQ ++ + S+ S LD
Sbjct: 128 RKALYNSDFL---VRTEELKALLKLEAHPRQAT--------LLEACKQRPELSVASAELD 176
Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEV 482
L +G +DLE+G + ++T+ + +FL + F +E+
Sbjct: 177 RHPMLLTVLNGTIDLESGALLPHDPANFLTRLVFIEYDPTAECPKFLAFLDRIFASDKEI 236
Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542
+ Y R G L G Q + G+G +GKS L N+ + G+ Y A A +M
Sbjct: 237 ISYIQRFAGYCLTGLTGEQVLLFFYGLGANGKSVLANVFRALCGD-YASTAGAELLMVRD 295
Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602
L L GSR+V++SE ++ + + A+IKQ+TG D ++ R YG +S P
Sbjct: 296 RRS---PTNDLAGLRGSRLVVVSEFDDGERLAEAQIKQLTGEDAISCRFLYGEFFSYVP- 351
Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK--PIANRDASFAQKLETKYTLEAKKWFL 660
F P ++ N +R D WRR+ ++ F+ P RD +KL + W +
Sbjct: 352 QFKPLLIGNHRPKIRGTDHGIWRRFHLVSFNVVIPPEERDPHLQKKLLQEL-PGILAWAV 410
Query: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSE 720
+G + +GL+ PE A E RQ D + WI + C + + +L +S++E
Sbjct: 411 RGCLDWQRQGLNP--PESVKAAVTEYRQAEDVFGQWIAEYCHRDVGMTAPAAALLRSFAE 468
Query: 721 YREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771
+ + ++T L GF I +GL L
Sbjct: 469 FS------GWRNVTTTKFGRMLTDAGFSKEKSHGTIR--------WRGLGL 505
>gi|309781007|ref|ZP_07675746.1| prophage LambdaMc01, DNA primase, P4 family [Ralstonia sp.
5_7_47FAA]
gi|330824596|ref|YP_004387899.1| phage/plasmid primase, P4 family [Alicycliphilus denitrificans
K601]
gi|308920310|gb|EFP65968.1| prophage LambdaMc01, DNA primase, P4 family [Ralstonia sp.
5_7_47FAA]
gi|329309968|gb|AEB84383.1| phage/plasmid primase, P4 family [Alicycliphilus denitrificans
K601]
Length = 766
Score = 385 bits (988), Expect = e-104, Method: Composition-based stats.
Identities = 111/521 (21%), Positives = 184/521 (35%), Gaps = 50/521 (9%)
Query: 260 YDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYN-----KA 314
Y E WD D G T H + S +
Sbjct: 275 YPPEEAAEGWDVADAIAEGFDVATFLTHGPRLQMHDVADDVDPVVSSDESVWGTEDALAL 334
Query: 315 MFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPE 374
F+ + Y A W D W T + + + S+ ++ P+
Sbjct: 335 SFTRRYHRDWRYVAGWGKWLVWDGQR---WRTED---TLAATDLIRSVCRQTAVRADNPK 388
Query: 375 DNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDG 434
K + + A + T+D D+ L G
Sbjct: 389 VAAK-----------------LASAGTVGGVERLARADRRHAATTDEWDADPWLLNTPGG 431
Query: 435 ILDLETGQKVKPTKELYITK-STGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMA 493
++DL+TG+ + +TK +T TP + ++F+D V+G +E+ Y R VG A
Sbjct: 432 VVDLKTGRMRTHERADRMTKITTATPSGDCPTWRQFIDEVTG--GDQELQSYLQRMVGYA 489
Query: 494 LLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL 553
L G + + G G +GKS +N + Y NA M+ R + +
Sbjct: 490 LTGSTQEHALFFLYGTGANGKSVFVNTLATIL-RDYATNAPMDTFMETR---TDRHPTDM 545
Query: 554 IRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKH 613
L G+R V ET + +K+K +TGGD ++AR + + P F F+ N
Sbjct: 546 AGLRGARFVAAIETEQGKRWAESKLKNLTGGDKISARFMRQDFFEFFP-QFKLFVAGNHK 604
Query: 614 LFVRNPDDAWWRRYIVIPF--DKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGL 671
+RN D+A RR +IPF P RD + QKL + W ++G + G
Sbjct: 605 PAIRNIDEAMKRRLHLIPFTITVPPERRDKNLQQKLLAER-DGILAWAVQGCLDWQRHG- 662
Query: 672 DVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRK 731
+ P+ + A EE + D W+D+ C N + L + ++ E +
Sbjct: 663 RLSPPQRVVDATEEYFEAEDALGRWLDERCVREPNAKSLTAELFNDWKQWAEASGEFVG- 721
Query: 732 RISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLK 772
+ R + L +G + R +G+ LK
Sbjct: 722 --AQRRFSDLLITRGLDKW-------RNGMGVRGFQGIGLK 753
>gi|225573260|ref|ZP_03782015.1| hypothetical protein RUMHYD_01451 [Blautia hydrogenotrophica DSM
10507]
gi|225039392|gb|EEG49638.1| hypothetical protein RUMHYD_01451 [Blautia hydrogenotrophica DSM
10507]
Length = 740
Score = 385 bits (988), Expect = e-104, Method: Composition-based stats.
Identities = 118/540 (21%), Positives = 204/540 (37%), Gaps = 46/540 (8%)
Query: 262 EENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKK 321
+E W + + + + S ++ + + L + +SD + +
Sbjct: 221 DEELASIWQS--ACRFAGKVQSQEGYVSPEDYNDEFCRESLKPADYSDIGQAKVLAKEYG 278
Query: 322 GHFLYTADT-------KAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPE 374
YTA T W + + V LD A + + ++ + D+ +
Sbjct: 279 MELRYTAATDYIRFCGACWVESKQQAVGAAEEFLDLQLADAKDDVRWTRQALLDVGVAED 338
Query: 375 DNNKNSKSPR-------------FWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDL 421
D K+ + Y+ ++ + A + I+
Sbjct: 339 DIMAGGKALEKKISGGQTNVYLAYLSALAYQAFVMKRRDMKYVVSALQAAKPMLEISVSD 398
Query: 422 LDSSSRFLGEQDGILDLETGQ--KVKPTKELYITKSTGT-PFVEGEPSQEFLDLVSGYF- 477
LD L DG L G + + E YITK T P +G+ +LD + F
Sbjct: 399 LDRDGFLLNTPDGTYYLPDGLEGRRDHSPEDYITKITAAGPGDQGKD--LWLDALDTIFC 456
Query: 478 ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
+ + ++DY + VGMA +G + I G G +GKST N + G Y N A
Sbjct: 457 QDQALIDYVQQIVGMAAVGRVYLESLIIAYGEGRNGKSTFWNAVARVLGT-YSGNMSADT 515
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
+ P L + G R++I +E E +N + +KQM D + A Y + +
Sbjct: 516 LTVGCKR---NVKPELAEVKGKRLIIAAELEEGMRLNTSVVKQMCSTDEIFAEKKYKDPF 572
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDASFAQKLETKYTLEA 655
S +P S T + N V D WRR IVIPF+ I ++A L ++
Sbjct: 573 SFTP-SHTLVLYTNHLPRVGANDPGTWRRLIVIPFNAKIEGSGDIKNYADYLVSEAAPSI 631
Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLA 715
W ++G K IS+ + P A + R+ D ++ +CC++ + E+S L
Sbjct: 632 MTWIIEGAKKAISRNFHIPAPACVEDAIKSYREDNDWLGHFLGECCEVDKVYREKSGELY 691
Query: 716 KSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAF 775
+ Y Y + Y R ST L+ GF + ++ K+ I+GL++ F
Sbjct: 692 QEYRSYCMRTGEYAR---STADFYNALELAGF--------MRQKTKTGNFIRGLRIIEDF 740
>gi|256617080|ref|ZP_05473926.1| phage DNA polymerase [Enterococcus faecalis ATCC 4200]
gi|257088357|ref|ZP_05582718.1| phage DNA polymerase [Enterococcus faecalis D6]
gi|256596607|gb|EEU15783.1| phage DNA polymerase [Enterococcus faecalis ATCC 4200]
gi|256996387|gb|EEU83689.1| phage DNA polymerase [Enterococcus faecalis D6]
Length = 748
Score = 384 bits (986), Expect = e-104, Method: Composition-based stats.
Identities = 133/672 (19%), Positives = 235/672 (34%), Gaps = 67/672 (9%)
Query: 143 KTKKE-YTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNN 201
KT + + P +D + ++ + F +F + + + S+
Sbjct: 106 KTARPRFHVYFPIETVADKDEYVNLKQQINEAFPYFDDNAMDAARLLFGTSNSEVEIYEG 165
Query: 202 NRQYTN-------REITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWS 254
+++ T+ + + LS GE N + + + + + +
Sbjct: 166 SKRVTDVLSEDLFADWESRLSEIGEGSRNSTMS---HIAGKLIKRYGAKEETYHLFLEQA 222
Query: 255 KQ-GSTYDEENFNYKWDTFDFEEIGDTAKKRST-FTSLFYHHGKLIPKGLLASRFSDAYN 312
++ +E W++ G K++ Y+ L + +SD
Sbjct: 223 EKCNPPLPDEELKSIWNS--AVRFGKKVKQQEGYIPPEQYNKDT----ELEPTDYSDVGQ 276
Query: 313 KAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFD-LSE 371
+ + + Y+ T N W + K A E+ +++
Sbjct: 277 ATVLAREYECKLRYSPST----DYIVYNGSYWEESAPKSQAVAQALTERQLEEAETAIAK 332
Query: 372 EPEDN---------------------NKNSKSPRFWFNTD--YRRQNVEENSKAKSTAQS 408
+ ++ NK F + Y++ V+ ++
Sbjct: 333 QTQEMVKNGAFAILASVGPKKAVPMFNKEQAHSYELFESAQAYKKYAVKRRDDKYLSSAL 392
Query: 409 LEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE 468
A + I +LD + L DL TG E YITK T Q
Sbjct: 393 KVARPMLEIEQRILDVNEFLLNTPSATYDLRTGYTQDHKAEDYITKQTECDPSSNNE-QL 451
Query: 469 FLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527
+ D ++ F +E++DY VG+A +G + I G G +GKST N+I GN
Sbjct: 452 WFDALNTIFVGDQELIDYVQMIVGLAAIGKVYVEALIISYGEGRNGKSTFWNVISRVLGN 511
Query: 528 QYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCM 587
Y + A + P L G R++I +E E +N + IKQ+ D +
Sbjct: 512 -YSGSISADILTSQIRR---NVKPELAEAKGKRLLIAAELEEGMRLNTSNIKQLCSTDEI 567
Query: 588 TARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA-NRD-ASFAQ 645
A Y + + P + T + N V D WRR IVIPF I N+D ++A
Sbjct: 568 AAEKKYKDPFRYVP-THTLVLYTNHLPKVGAIDKGTWRRLIVIPFLATIEGNKDVKNYAD 626
Query: 646 KLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE 705
L KW L+G K I+ + +P V +A EE + D ++++CC+
Sbjct: 627 YLFENAGGAVLKWILEGAKRVIAADYKLPVPRVVNEAIEEYKAANDWLGHFLEECCETDS 686
Query: 706 NLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRI 765
E+S + Y + + Y R S+ ++ GF K R
Sbjct: 687 EYVEKSGEVYSEYRAFCMRTGEYTR---SSADFYAAIENAGFA--------RHRNKKGRY 735
Query: 766 IKGLKLKPAFES 777
IKGL++K F
Sbjct: 736 IKGLRVKSEFLD 747
>gi|300689921|ref|YP_003750916.1| DNA primase, phage/plasmid [Ralstonia solanacearum PSI07]
gi|299076981|emb|CBJ49594.1| putative DNA primase, phage/plasmid [Ralstonia solanacearum PSI07]
Length = 759
Score = 384 bits (985), Expect = e-104, Method: Composition-based stats.
Identities = 109/521 (20%), Positives = 182/521 (34%), Gaps = 50/521 (9%)
Query: 260 YDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYN-----KA 314
Y E WD D G H + + +
Sbjct: 268 YPPEEAGDGWDAADAVAEGFDIAAFIAHGPRLQMHDVVDDPEPVIGSDESVWGTEDALAL 327
Query: 315 MFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPE 374
F+ + Y A W D + W T + + + ++ +E P+
Sbjct: 328 AFTRRYHRDWRYVAAWGRWLVWDG---HRWRTED---TLAATDLIRNVCRHAALHAENPK 381
Query: 375 DNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDG 434
K + + + A + T+ D+ L
Sbjct: 382 LAAK-----------------LATSGTIAGVERLARADRRHAATTSEWDADPWLLNTPGS 424
Query: 435 ILDLETGQKVKPTKELYITK-STGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMA 493
++DL TG++ ++ +TK +T TP + ++FL V+G E+ Y R G A
Sbjct: 425 VVDLRTGRQRPHDRDDRMTKITTATPGGDCPTWRQFLAEVTG--GDAELQAYLQRMAGYA 482
Query: 494 LLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL 553
L G + + G G +GKS +N + G+ Y NA M+ R + +
Sbjct: 483 LTGSTQEHALFFLYGTGANGKSVFVNTLATILGD-YAANAAMDTFMETR---TDRHPTDM 538
Query: 554 IRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKH 613
L G+R V ET + +K+K +TGGD ++AR + + P F F+ N
Sbjct: 539 AGLRGARFVAAIETEQGRRWAESKVKNLTGGDKISARFMRQDFFEFFP-QFKLFVAGNHK 597
Query: 614 LFVRNPDDAWWRRYIVIPF--DKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGL 671
+RN D+A RR +IPF P RD QKL + W ++G + G
Sbjct: 598 PAIRNIDEAMKRRLHLIPFTVTVPPERRDKHLQQKLLAER-DGILAWAVQGCLDWQRLG- 655
Query: 672 DVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRK 731
+D P+ L A EE + D W+D+ C N + L + ++ E +
Sbjct: 656 RLDPPQQVLDATEEYFEAEDALGRWLDERCVREANAKSLTAELFNDWKQWAEAAGEFAG- 714
Query: 732 RISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLK 772
S + L +G + R +G+ LK
Sbjct: 715 --SQKRFADLLLTRGVEKW-------RNTAGLRGFRGVGLK 746
>gi|299067595|emb|CBJ38799.1| putative DNA primase, phage/plasmid [Ralstonia solanacearum CMR15]
Length = 765
Score = 384 bits (985), Expect = e-104, Method: Composition-based stats.
Identities = 110/519 (21%), Positives = 187/519 (36%), Gaps = 50/519 (9%)
Query: 262 EENFNYKWDTFDFE----EIGDTAKKRSTFTSLFYHHGKLIPKGL-LASRFSDAYNKAMF 316
E+ WD D +IG + + + L ++ F
Sbjct: 276 PEDAPEGWDAADAIEEEFDIGGYLAAGARVPVMLEVDETVSADVLEGVDWETEDGLATAF 335
Query: 317 SIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDN 376
+ + Y + W K W+ + ++ + + + D
Sbjct: 336 TRRYGDDWRYCS---LWGKWLVWTGVRWNPD-------QLLYVTHLSRGICRAASFKADT 385
Query: 377 NKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGIL 436
+ + +S S + + + T+D D+ L G++
Sbjct: 386 PRQKA-------------KLASSSTIASVEKISRSDPKHAATADEWDADVWALNTPGGVV 432
Query: 437 DLETGQKVKPTKELYITK-STGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALL 495
DL TGQ +E +TK +T TP + ++FL V+G E+ Y R G AL
Sbjct: 433 DLRTGQLRAHRREDRMTKITTATPGGDCPTWRQFLAEVTG--GDAELQAYLQRMAGYALT 490
Query: 496 GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIR 555
G + + G G +GKS +N + G+ Y +NA M+ R A + +
Sbjct: 491 GSTQEHALFFLYGTGANGKSVFVNTLATILGD-YAVNAAMDTFMETR---ADRHPTDMAG 546
Query: 556 LMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLF 615
L G+R V ET + +K+K +TGGD ++AR + + P F F+ N
Sbjct: 547 LRGARFVAAIETEQGRRWAESKVKNLTGGDKISARFMRQDFFEFFP-QFKLFVAGNHKPA 605
Query: 616 VRNPDDAWWRRYIVIPF--DKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDV 673
+RN D+A RR +IPF P RD QKL + W ++G + G +
Sbjct: 606 IRNIDEAMKRRLHLIPFTITVPPERRDKHLQQKLLAERG-GILAWAVQGCLDWQRLG-RL 663
Query: 674 DIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRI 733
P+ L A EE + D W+D+ C N + L + ++ E +
Sbjct: 664 QPPQQVLDATEEYFEAEDALGRWLDERCVREANAKTLTAELFNDWKQWAEAAGEFAG--- 720
Query: 734 STRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLK 772
S + L +G + R +G+ LK
Sbjct: 721 SQKRFADLLLIRGVEKW-------RNTAGLRGFRGVGLK 752
>gi|315654960|ref|ZP_07907865.1| P4 family prophage LambdaSa04 [Mobiluncus curtisii ATCC 51333]
gi|315490921|gb|EFU80541.1| P4 family prophage LambdaSa04 [Mobiluncus curtisii ATCC 51333]
Length = 747
Score = 384 bits (985), Expect = e-104, Method: Composition-based stats.
Identities = 123/543 (22%), Positives = 191/543 (35%), Gaps = 55/543 (10%)
Query: 262 EENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKK 321
+ W + + G + +GL + F+D + +
Sbjct: 231 DGELEAIWHSAL--KFGAKV---AATPGYIPPERYAEIQGLRPADFTDVGQATVLADEYA 285
Query: 322 GHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNS- 380
++ T W N W T A E DL E+ + ++
Sbjct: 286 QKLAFSEAT-DWLVY---NGSFWEETRPGSRAIAQELTTRQLEQAADLLEKAREACDSTG 341
Query: 381 -----------------------KSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSI 417
+ Y + ++ TA EA + +
Sbjct: 342 VTQLLSAMSLTKAKNLFTKVQWNAYEQLTDAQAYEKYVLKRRDSKAITASLKEAAPMLQV 401
Query: 418 TSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGT-PFVEGEPSQEFLDLVSGY 476
T LD+ L G +DL TGQ + +ITK T T P +G + +L + +
Sbjct: 402 TQADLDAGPFALNAPGGTIDLTTGQIHEHDYGDFITKQTTTDPATKGMDT--WLAALEVF 459
Query: 477 FE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535
F+ +E++DY R VG+ +G + I G G +GKST N I G Y N A
Sbjct: 460 FQGDQELIDYVQRIVGLTAIGKVYVEALIIAYGDGRNGKSTFWNTIARVLGT-YAGNISA 518
Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595
+ P L G R++I +ET E ++ + KQM D + A Y
Sbjct: 519 DALTVGVKR---NVKPELAEAKGKRLLIAAETEEGMRLSTSIAKQMASTDLLYAEKKYKA 575
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTL 653
++ +P S T + N V D WRR IVIPF+ I + ++A+ L
Sbjct: 576 PFAFAP-SHTLVLYTNHLPRVGAMDVGIWRRLIVIPFEAKIEGSSDIKNYAEHLYQNAAG 634
Query: 654 EAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHS 713
+W + G + I P +A E R D ++DD C+I + + S
Sbjct: 635 AVLQWIVDGARKVIDDDFVFKPPPKVRRALEAYRFENDWMTHFLDDNCEIDPSFTQPSGE 694
Query: 714 LAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773
L Y Y Y R ST L+Q GF + KS R + GL+LK
Sbjct: 695 LYSVYRAYALSVGEYAR---STSDFYSALEQLGF--------RRRRTKSARYVDGLRLKS 743
Query: 774 AFE 776
F
Sbjct: 744 EFN 746
>gi|152981706|ref|YP_001354386.1| hypothetical protein mma_2696 [Janthinobacterium sp. Marseille]
gi|151281783|gb|ABR90193.1| bacteriophage-related protein [Janthinobacterium sp. Marseille]
Length = 758
Score = 383 bits (984), Expect = e-104, Method: Composition-based stats.
Identities = 114/523 (21%), Positives = 194/523 (37%), Gaps = 55/523 (10%)
Query: 262 EENFNYKWDTFDFEEIGDTAKKRSTFT---SLFYHHGKLIPKGLLA--SRFSDAYNKAMF 316
++ WD D G + ++ P LL ++ F
Sbjct: 270 PDDRPEGWDAADAIPDGFDVAGFLAVGERMPVMRSVEEIAPPDLLTGIDWSTEDGLSTAF 329
Query: 317 SIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDN 376
+ + Y W K W+ M ++ + + +
Sbjct: 330 TRRYGQDWRYC---ALWGKWLVWTGVRWNAD-------QMLYVSHLARGIC------RNA 373
Query: 377 NKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGIL 436
+ ++SPR ++ + +S + + + + +++ D+ + L G++
Sbjct: 374 SLKAESPR-------QKAKLASSSTISAVEKIARSDPKHASSAEEWDADTWALNTPGGVV 426
Query: 437 DLETGQKVKPTKELYITK-STGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALL 495
DL TG+ + ++ +TK ST TP + FL V+G +++ Y VG L
Sbjct: 427 DLRTGRMREHRRDDRMTKVSTATPKGDCPTWHGFLADVTG--GDADLIAYLQLMVGYCLT 484
Query: 496 GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIR 555
G + G G +GKS +N+I G+ Y NA M R + L
Sbjct: 485 GITSEHALFFLYGTGANGKSVFVNVITTILGD-YAANAPMDTFMDARN---DRHPTDLAG 540
Query: 556 LMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLF 615
L G+R V ET + N +K+K +TGGD ++AR + + P F I N
Sbjct: 541 LRGARFVSSIETEQGRRWNESKVKAITGGDKVSARFMRQDFFEYVP-QFKLVIAGNHKPS 599
Query: 616 VRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDV 673
+RN D+A RR +IPF I RD KL K W ++G + +GL
Sbjct: 600 IRNVDEAMKRRLHLIPFTVTIPPEKRDGRLTDKLL-KERDGILAWAVEGCSRWQQQGLKP 658
Query: 674 DIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNY--DRK 731
P + A EE + D WI++ C + + E L + E+ E+ + K
Sbjct: 659 --PASVVSATEEYFEAEDALGQWIEERCLLAKTSREGVSDLFSDWREWAERAGEFVGSVK 716
Query: 732 RISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPA 774
R S T ++ GG+ R + GL L+P
Sbjct: 717 RFSELMATRKFEKCRLTGGV------------RGLTGLSLRPK 747
>gi|325110202|ref|YP_004271270.1| phage/plasmid primase, P4 family [Planctomyces brasiliensis DSM
5305]
gi|324970470|gb|ADY61248.1| phage/plasmid primase, P4 family [Planctomyces brasiliensis DSM
5305]
Length = 707
Score = 383 bits (984), Expect = e-104, Method: Composition-based stats.
Identities = 97/472 (20%), Positives = 167/472 (35%), Gaps = 38/472 (8%)
Query: 304 ASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMK 363
F+D N +F + Y K+W N +I +
Sbjct: 266 PDHFTDCRNAEVFIQQHGENLRYCFPWKSWLIW--NGQRWEPDRTSQILRRAKSVYEFWM 323
Query: 364 EDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLD 423
E + D+ + D + + S +A ++ +T+D L+
Sbjct: 324 EQIADMHPDD--------------AKDAIKHAQKSASTRGMEQFLKQAAAMVPVTTDDLN 369
Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESE-EV 482
+G LDL TG+ + +T T + PS + + F +V
Sbjct: 370 RDPWLFNCPNGTLDLRTGELRPHNRADLLTVICPTAYNPDAPSFTWDGFLESTFADHGDV 429
Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542
+ + R G AL+G + G G +GKSTL+N I G Y + A + +
Sbjct: 430 IPFLQRLFGAALVGIVRDHILPVFWGSGANGKSTLLNAIMAILGGDYALQAVPEMLCDS- 488
Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602
+ + L G R V ET + + +K +TGGD + AR Y + + P
Sbjct: 489 --DQDRHPTERADLYGKRFVAAVETEAGRRLKESFVKALTGGDRIRARHLYQDFFEFDP- 545
Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFL 660
S + N V D WRR ++PF + D +KL+ + W +
Sbjct: 546 SHLIVLCSNHKPKVIGDDYGIWRRLRLVPFTATFKGSDADPQLPEKLQAEAE-GVLAWMV 604
Query: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSE 720
+G + ++GL+ PE L+A E + +D +ID CC + + ++ E
Sbjct: 605 RGCLDWQAQGLN--EPETVLQATSEYKNESDVIGGFIDACCYTNDRMQVSFSQFYTAFEE 662
Query: 721 YREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLK 772
+ + + +RT T + F R +GL LK
Sbjct: 663 WCNESGE----NLPSRTRTGRTLNERFEQVPNVR--------GRWYRGLGLK 702
>gi|302876789|ref|YP_003845422.1| phage/plasmid primase, P4 family [Clostridium cellulovorans 743B]
gi|307687470|ref|ZP_07629916.1| phage/plasmid primase, P4 family protein [Clostridium cellulovorans
743B]
gi|302579646|gb|ADL53658.1| phage/plasmid primase, P4 family [Clostridium cellulovorans 743B]
Length = 755
Score = 383 bits (984), Expect = e-104, Method: Composition-based stats.
Identities = 119/561 (21%), Positives = 192/561 (34%), Gaps = 46/561 (8%)
Query: 240 TRGSSKGKEIARRWSKQ-GSTYDEENFNYKWDT-FDFEEIGDTAKKRSTFTSLFYHHGKL 297
+ K EI +++ +E W + F + G
Sbjct: 207 YGATDKAHEIFLEEAEKCDPPLSDEELKTIWYSAVKFAKKIQGQDGYVPPDDYNDDFGGG 266
Query: 298 IPKGLLASRFSDAYNKAMFSIYKKGHFLY-------TADTKAWYKKDKNNVYIWSLTLDK 350
L +SD + + D + W + + V LD
Sbjct: 267 EGDSLKPDDYSDVGQARVLCREYGDELKFTAATDFIRFDGEVWVEDKQMAVGACVEFLDL 326
Query: 351 ITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPR-------------FWFNTDYRRQNVE 397
A + L +++ + D SK+ Y ++
Sbjct: 327 QLADANDELERVRKQLIDAGIAESTVKAGSKAVAKEVEGDQLGLFYALLAAEKYMAFTMK 386
Query: 398 ENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQK--VKPTKELYITKS 455
T+ A S+ +I LD + L +LE G ITK
Sbjct: 387 RRDYKYITSALNVAKSMVTIKVSDLDKNPVLLNTPFATYNLEKGMAGVQPHDPFDLITKI 446
Query: 456 TGT-PFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSG 513
T P EG +L+ + +F +E+++Y +G+A +G + I G G +G
Sbjct: 447 TEVSPGDEGMDI--WLEALETFFCGDQELIEYVQMVIGLAAIGKVYEEFIIIAYGDGANG 504
Query: 514 KSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI 573
KST N I G + M N+ A P + L G R++I SE E +
Sbjct: 505 KSTFWNTIARVLGTYSGKISSDILTMGNKV----NAQPEMAELKGKRLIIASEMQEGVRL 560
Query: 574 NAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFD 633
N A +KQ+ D + A Y + + PA + N V DD WRR VIPF+
Sbjct: 561 NTAMVKQLCSTDEIQACKKYKDPFHFMPA-HQVVLYTNHLPRVGANDDGIWRRLKVIPFN 619
Query: 634 KPIA-NRD-ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTD 691
I N D ++A L KW ++G + V P+V A E R+ D
Sbjct: 620 AKIKGNSDIKNYADYLFENAGPAIMKWIIEGAEKVSKANHKVADPKVVRDAVEAYREDND 679
Query: 692 TYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGI 751
+I +CC++ ++ E+S + Y Y Q Y R ST + + GF
Sbjct: 680 WLGHFIAECCEVDDSFEEKSGEFYQQYRAYCIQNGEYIR---STTDFYSAIDKAGFY--- 733
Query: 752 KREKIEKEWKSKRIIKGLKLK 772
+ ++ G+KLK
Sbjct: 734 -----RHKTNKGVMVHGVKLK 749
>gi|291556511|emb|CBL33628.1| phage/plasmid primase, P4 family, C-terminal domain [Eubacterium
siraeum V10Sc8a]
Length = 752
Score = 382 bits (981), Expect = e-103, Method: Composition-based stats.
Identities = 113/544 (20%), Positives = 190/544 (34%), Gaps = 55/544 (10%)
Query: 261 DEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYK 320
++ + W + +A++ + + +L P +SD M +
Sbjct: 233 EQSELDSIWRSAQRFYEKISAQEGYIPPEQYNQNLQLKPTD-----YSDVGQATMLAREY 287
Query: 321 KGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDN---- 376
+G Y+ T N W + K A E+ ++ D
Sbjct: 288 EGKLRYSPST----DFLVYNGRFWEESKPKAQAVAQELTTRQLEEAETEIKKAVDEMMKN 343
Query: 377 --------------------NKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFS 416
+ ++ T YR ++ A E +
Sbjct: 344 GAWELLASMGPKKAAMAFSSEQARSFQKYENATTYRNFAIKRRDSKNIFAALKETRPMVE 403
Query: 417 ITSDLLDSSSRFLGEQDGILDLETG--QKVKPTKELYITKSTGTPFVEGEPSQEFLDLVS 474
I LD+ L DL G + T YITK T + L++
Sbjct: 404 IDQRQLDADEFLLNTPSATYDLRIGIASAHEHTPADYITKQTSVDPADKGTEIWQDALIT 463
Query: 475 GYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV-INA 533
+ E++ Y G++ +G + I G G +GKST N + G ++A
Sbjct: 464 FFCGDNELISYVQEVAGLSAIGKVCVEALIIAYGEGRNGKSTFWNTLARVLGTYSGNLSA 523
Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593
+ + R P L G R++I +E E ++ A +KQ++ D + A Y
Sbjct: 524 DTLTVGCKR-----NVKPELAEAKGKRLIIAAELEEGMRLSTANVKQLSSTDEIYAEKKY 578
Query: 594 GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKY 651
+ +S P S T + N V D WRR IVIPF+ I + ++A L K
Sbjct: 579 KDPFSFVP-SHTLVLYTNHLPKVGALDAGTWRRLIVIPFNARIEGSSDIKNYADYLYAKA 637
Query: 652 TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEES 711
KW + G K I + + P V +A + R+ D + D+CC I + +S
Sbjct: 638 GGAILKWIMAGAKRVIERDYHIVKPAVVEEATRKYRENNDWLSQFFDECCVIDPDGKTKS 697
Query: 712 HSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771
+Y Y Q +Y R ST L+ GF + ++ + +I GL+L
Sbjct: 698 GEFYTAYRSYCMQVGDYIR---STTDFYAALEAAGF--------VRRKTSAGIMISGLQL 746
Query: 772 KPAF 775
K F
Sbjct: 747 KSDF 750
>gi|302035479|ref|YP_003795801.1| putative DNA primase' [Candidatus Nitrospira defluvii]
gi|300603543|emb|CBK39873.1| putative DNA primase, P4 family (phage related) [Candidatus
Nitrospira defluvii]
Length = 763
Score = 382 bits (981), Expect = e-103, Method: Composition-based stats.
Identities = 119/681 (17%), Positives = 213/681 (31%), Gaps = 78/681 (11%)
Query: 102 ILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVED 161
I + +R + G KK+ + + P + P
Sbjct: 148 IAVVYRYDPPGGKKEFRPWDAKRR-------------KMAPPEPRPLY--NQPGLAAASH 192
Query: 162 TPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEF 221
L+ E + + + + W+ + I G ++
Sbjct: 193 VVLVEGEKCAQALIAIGVVATTAMHGANAPVDKTDWS---PLAGKSVLIWPDRDAPGWDY 249
Query: 222 YNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTA 281
+ + + E +D F + +
Sbjct: 250 ADRASQAILNAGATTVAILMPPDDKPEGWDAADAIPEDFDVGGFLAVGERMPVMRSVE-- 307
Query: 282 KKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNV 341
+ L GL F+ + Y W K
Sbjct: 308 --ETPSPDLLNGIDWTTEDGL----------STAFTRRYGEDWRYC---ALWGKWLVWTG 352
Query: 342 YIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSK 401
W+ V +S +N+ +T + + ++
Sbjct: 353 VRWNPD-----------------QVLYVSHLARGICRNASLKA---DTPRLKGKLASSAT 392
Query: 402 AKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITK-STGTP- 459
S + + + T++ D+ L G++DL TG+ ++ +TK +T TP
Sbjct: 393 ISSVEKIARSDPKHASTAEEWDADVWALNTPGGVVDLRTGRMRPHRRDDRMTKVTTATPQ 452
Query: 460 FVEGEPSQEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLM 518
+ ++ ++M Y VG L G + G G +GKS +
Sbjct: 453 GNPDSACPTWRGFLTDVTGGDADLMAYLQLMVGYCLTGVTSEHALFFLYGTGANGKSVFV 512
Query: 519 NLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKI 578
N++ G+ Y NA M+ R + L L G+R V ET + N +K+
Sbjct: 513 NVLTTILGD-YAANAPMDTFMEAR---TDRHPTDLAGLRGARFVSSIETEQGRRWNESKV 568
Query: 579 KQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA- 637
K +TGGD ++AR + + P F I N +RN D+A RR +IPF I
Sbjct: 569 KAITGGDKVSARFMRQDFFEYLP-QFKLVIAGNHKPSIRNVDEAMKRRLHLIPFTVTIPP 627
Query: 638 -NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAW 696
RD +KL K W ++G + +GL P + A EE + D W
Sbjct: 628 ERRDGRLTEKLL-KERDGILAWAVEGCSRWQRQGLKP--PASVVSATEEYFEAEDALGQW 684
Query: 697 IDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKI 756
I++ C + ++ E L + E+ E+ Y S + + + + F
Sbjct: 685 IEERCLLAKSHREGVSELFADWREWAERAGEYVG---SVKRFSELMATRKFEKC------ 735
Query: 757 EKEWKSKRIIKGLKLKPAFES 777
+ R I G+ L+P S
Sbjct: 736 -RLTGGARAIAGIALRPKPHS 755
>gi|154247365|ref|YP_001418323.1| P4 family phage/plasmid primase [Xanthobacter autotrophicus Py2]
gi|154161450|gb|ABS68666.1| phage/plasmid primase, P4 family [Xanthobacter autotrophicus Py2]
Length = 462
Score = 382 bits (980), Expect = e-103, Method: Composition-based stats.
Identities = 109/478 (22%), Positives = 173/478 (36%), Gaps = 47/478 (9%)
Query: 305 SRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKE 364
++ A F+ + DT AW++ N + E
Sbjct: 23 DLLTEDNAAARFTELFADKLRFCHDTGAWFEW--TGAAWQRNRTGLAFNWARNLARDLAE 80
Query: 365 DVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDS 424
D R + S A + F++T D D
Sbjct: 81 SEPDKV----------------------RYVTGKTSFATGVEKFARTDPAFAVTMDAWDR 118
Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE-SEEVM 483
LG G +DL TG ITK G + +L + E +
Sbjct: 119 DPFMLGTPGGTVDLRTGILRPADPADGITKLAGCTPAAEAMCRRWLQFLEEATGGDAEAI 178
Query: 484 DYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP 543
+ + G +L G + I + G GG+GKS +N++ + Y A +
Sbjct: 179 RFMQQWCGYSLTGDTREHALIFVYGPGGNGKSVFLNVLTAIMAD-YATTAAMDTFTASHN 237
Query: 544 PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPAS 603
K L L G+R+V SET E ++IKQMTGGD +TAR + +S P +
Sbjct: 238 ---DKHPTDLAMLRGARLVTASETEEGRAWAESRIKQMTGGDTITARFMRQDFFSFRP-N 293
Query: 604 FTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGV 663
F IV N +RN DDA RR+ ++PF + A D KL+ ++ +W ++G
Sbjct: 294 FKLTIVGNHKPALRNVDDAARRRFNIVPFTRKPATPDPELEAKLKEEW-PGILRWMIEGC 352
Query: 664 KAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIG---ENLWEESHSLAKSYSE 720
+ GL P +A + D WI++ C + ++W+ L +S++E
Sbjct: 353 LDWQKNGLVR--PASVTEATQTYFSDQDLLGQWIEEMCRVERERPDMWDRRADLFESWTE 410
Query: 721 YREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESV 778
Y S ++ + +KGF K S R KG++L P S
Sbjct: 411 YARGAGE---DAGSAKSFYEAMLRKGFEPIRKH--------SGRGFKGIQLLPKAHSA 457
>gi|227498327|ref|ZP_03928477.1| prophage protein [Acidaminococcus sp. D21]
gi|226903789|gb|EEH89707.1| prophage protein [Acidaminococcus sp. D21]
Length = 747
Score = 382 bits (980), Expect = e-103, Method: Composition-based stats.
Identities = 117/566 (20%), Positives = 202/566 (35%), Gaps = 58/566 (10%)
Query: 240 TRGSSKGKEIARRWSKQ-GSTYDEENFNYKWDTFDFEEIGDTAKKRST-FTSLFYHHGKL 297
+ + I +++ + N W + G+ ++ + Y++
Sbjct: 202 YGATERAYSIFLEEAEKCDPPLADAELNKIWQS--AVRFGEKIARQDGYISPDQYNNDFA 259
Query: 298 IPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMN 357
L +SD + YT +T + N W+ + + +
Sbjct: 260 RQGSLKPEDYSDIGQAKVLKREYGDELRYTENT----DFLRYNGIYWAESHQEAIGAAEE 315
Query: 358 FLVSMKEDVFDLSEEPED-----------------------NNKNSKSPRFWFNTDYRRQ 394
FL D D E K+ + +
Sbjct: 316 FLELQLADARDQMEAGRKALQEMGVAAELIDKGGRMLEKVIEGSQQKAFQSYQAALAYYA 375
Query: 395 NVEENSKAKSTAQSLEA-GSIFSITSDLLDSSSRFLGEQDGILDLETGQ--KVKPTKELY 451
V + + +L+A + I LD+ L DL G + E Y
Sbjct: 376 FVMKRRDMRYIISALQALKPMLLIPIQALDADEFLLNTPSFTYDLRQGMAGRRNHRPEDY 435
Query: 452 ITKSTGT-PFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGV 509
ITK T P EGE + + +F +E++DY G+ +G + + G
Sbjct: 436 ITKCTAVDPGEEGETV--WQQALDEFFTGDQELIDYAQEICGLMAIGKVYVEALVIAYGD 493
Query: 510 GGSGKSTLMNLIKYAFGNQ-YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN 568
G +GKST N I G+ I+A+A R P + L G R+VI +E
Sbjct: 494 GRNGKSTYWNSIARVLGSYCGGISADALTANCKR-----NIKPEMAELKGKRMVIAAEME 548
Query: 569 ENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYI 628
E ++ + +KQ+ D + Y ++ P + T + N V D+ WRR I
Sbjct: 549 EGVRLSTSVLKQLCSTDEVGGEKKYKTPFTFVP-THTLVLYTNHLPRVGASDEGTWRRLI 607
Query: 629 VIPFDKPIAN--RDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEE 686
VIPF ++A L +W ++G + I+ + +P+ A +E
Sbjct: 608 VIPFKAQFEGHGEIKNYADYLVEAAGPAILRWIIEGAEKVIASEYHLTMPKCVRDAIQEY 667
Query: 687 RQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746
R D + +++DCCD+ + E+S +L +Y Y +Q Y R ST L++ G
Sbjct: 668 RGQNDWLRHFLEDCCDVDPSCQEKSGALYTAYRLYCQQMNEYTR---STTDFYGALEKAG 724
Query: 747 FIGGIKREKIEKEWKSKRIIKGLKLK 772
F ++ K+ I GLKLK
Sbjct: 725 F--------DRRKRKAGYFIYGLKLK 742
>gi|239906140|ref|YP_002952879.1| hypothetical protein DMR_15020 [Desulfovibrio magneticus RS-1]
gi|239796004|dbj|BAH74993.1| hypothetical protein [Desulfovibrio magneticus RS-1]
Length = 482
Score = 382 bits (980), Expect = e-103, Method: Composition-based stats.
Identities = 107/465 (23%), Positives = 181/465 (38%), Gaps = 26/465 (5%)
Query: 307 FSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDV 366
D N M + + Y D ++W D ++ +TL + I+ +
Sbjct: 36 LDDIGNAVMLASIFQNRIRYCEDLRSWLVWDGKHLAKNDVTLWRHARLIVRIRFHQAKSK 95
Query: 367 FDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAG--SIFSITSDLLDS 424
++L + + D + ++ SKA+ A A + LD
Sbjct: 96 YNL---------VTTNGIVVSKEDVLKWAIKSASKARMQAMLDVASILPQMATKLKELDK 146
Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY-FESEEVM 483
Q+G +DL TG+ K +T + + P E+L V + +
Sbjct: 147 DEYLFNCQNGTIDLRTGELRKHNLSDMLTHISDVSYRPDAPCPEWLKFVEDITLGNWHLQ 206
Query: 484 DYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP 543
+Y +G L G Q + G G +GKST +N G Y A +++
Sbjct: 207 EYLQEVLGYCLCGSVSEQIMFVLVGKGANGKSTFLNAFINVLGT-YAKTTPAHTFVKS-- 263
Query: 544 PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPAS 603
E+ L RL+G+R V E N +++ A +K ++GGD + AR + +P
Sbjct: 264 -ESRALRNDLARLVGARFVSAVEINSGKKLDEALVKGLSGGDRVAARFIGKEFFEYTP-Q 321
Query: 604 FTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAKKWFLK 661
F+ N V DD +RR VIPFD A D KL+ K W ++
Sbjct: 322 AKFFLAVNVFPEVSGADDGIYRRLRVIPFDAAFAPHQMDKDKPAKLK-KEAEGILAWAVE 380
Query: 662 GVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEY 721
G K + + + PEV +A R+ D +++IDD C + + SL +Y E+
Sbjct: 381 GFKRWYER-KSLLEPEVVTEASMAFREQMDAVRSFIDDYCILDPGASVQVGSLYDAYIEW 439
Query: 722 REQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRII 766
+Q + +S + ++ QKGF G + + WK + I
Sbjct: 440 AKQN---ALEPMSKKQFGTHVGQKGFTQG--KSGKTRSWKGLKFI 479
>gi|17545558|ref|NP_518960.1| hypothetical protein RSc0839 [Ralstonia solanacearum GMI1000]
gi|17427851|emb|CAD14541.1| probable bacteriophage-related protein [Ralstonia solanacearum
GMI1000]
Length = 765
Score = 382 bits (980), Expect = e-103, Method: Composition-based stats.
Identities = 112/519 (21%), Positives = 190/519 (36%), Gaps = 50/519 (9%)
Query: 262 EENFNYKWDTFDFEEIGDTAKKRSTFTSL----FYHHGKLIPKGL-LASRFSDAYNKAMF 316
++ WD D E G + + L ++ F
Sbjct: 276 PDDKPEGWDAADAIEEGFDVAGYLAAGARVPVVPEVDDSVSADVLEGVDWETEDGLATAF 335
Query: 317 SIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDN 376
+ + Y + W K W+ + ++
Sbjct: 336 TRRYGDDWRYCS---LWGKWLVWTGVRWNPD-----------------QLLYITHLSRGI 375
Query: 377 NKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGIL 436
+ + F T ++ + +S S + + + T+D D+ L G++
Sbjct: 376 CRAAS---FKAETPRQKAKLASSSTIASVEKIARSDPKHAATADEWDADVWALNTPGGVV 432
Query: 437 DLETGQKVKPTKELYITK-STGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALL 495
DL TGQ +E +TK +T TP + ++FL V+G E+ Y R G AL
Sbjct: 433 DLRTGQLRAHRREDRMTKVTTATPKGDCPTWRQFLSEVTG--GDVELQAYLQRMAGYALT 490
Query: 496 GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIR 555
G + + G G +GKS +N + G+ Y +NA M+ R A + +
Sbjct: 491 GSTQEHALFFLYGTGANGKSVFVNTLATILGD-YAVNAAMDTFMETR---ADRHPTDMAG 546
Query: 556 LMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLF 615
L G+R V ET + +K+K +TGGD ++AR + + P F F+ N
Sbjct: 547 LRGARFVAAIETEQGRRWAESKVKNLTGGDKISARFMRQDFFEFFP-QFKLFVAGNHKPA 605
Query: 616 VRNPDDAWWRRYIVIPF--DKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDV 673
+RN D+A RR +IPF P A RD + QKL + W ++G + G +
Sbjct: 606 IRNIDEAMKRRLHLIPFTVTVPPARRDKTLQQKLLAER-DGILAWAVQGCLDWQRLG-RL 663
Query: 674 DIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRI 733
D P+ L A EE + D W+D+ C N + L + ++ + +
Sbjct: 664 DPPQQVLDATEEYFEAEDALGRWLDERCVREINAKTLTAELFNDWKQWADSAGEFVG--- 720
Query: 734 STRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLK 772
S R + L +G + R +G+ LK
Sbjct: 721 SQRRFSDLLITRGVEKW-------RNTAGLRGFRGVSLK 752
>gi|258543726|ref|YP_003189159.1| hypothetical protein APA01_26880 [Acetobacter pasteurianus IFO
3283-01]
gi|256634804|dbj|BAI00780.1| phage/plasmid primase P4 [Acetobacter pasteurianus IFO 3283-01]
gi|256637860|dbj|BAI03829.1| phage/plasmid primase P4 [Acetobacter pasteurianus IFO 3283-03]
gi|256640914|dbj|BAI06876.1| phage/plasmid primase P4 [Acetobacter pasteurianus IFO 3283-07]
gi|256643969|dbj|BAI09924.1| phage/plasmid primase P4 [Acetobacter pasteurianus IFO 3283-22]
gi|256647024|dbj|BAI12972.1| phage/plasmid primase P4 [Acetobacter pasteurianus IFO 3283-26]
gi|256650077|dbj|BAI16018.1| phage/plasmid primase P4 [Acetobacter pasteurianus IFO 3283-32]
gi|256653067|dbj|BAI19001.1| phage/plasmid primase P4 [Acetobacter pasteurianus IFO 3283-01-42C]
gi|256656121|dbj|BAI22048.1| phage/plasmid primase P4 [Acetobacter pasteurianus IFO 3283-12]
Length = 466
Score = 381 bits (979), Expect = e-103, Method: Composition-based stats.
Identities = 95/475 (20%), Positives = 172/475 (36%), Gaps = 47/475 (9%)
Query: 307 FSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDV 366
++ A F+ K Y W+ + W S LV+ +
Sbjct: 30 LTEHGMAAAFTERYKDELRYDHKAGCWFLWTGTH---WQEDCKHRAFSYARMLVAEANQL 86
Query: 367 FDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSS 426
+ E+ + S + ++ + D
Sbjct: 87 CEQKEQA---------------------ITGKASFCGGVERFARTDPAHAVVPEDWDKDP 125
Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDY 485
L G +DL TG IT+ + P ++ ++ E++ +
Sbjct: 126 YLLATPGGTVDLRTGALRPACPADMITRVAAVAPSD-MPYPQWERFLNEATNGDTELIVF 184
Query: 486 FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545
R G L G + + G GG+GKS +N + G+ Y A +
Sbjct: 185 LKRWCGYCLTGDTREHALLFGYGPGGNGKSVFLNTLSRIMGD-YATVAAMDTFTASH--- 240
Query: 546 AGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFT 605
+ + L L G+R+V SET E ++IKQMTGGD +TAR + ++ P F
Sbjct: 241 GDRHSTDLAMLRGARLVTASETEEGRAWAESRIKQMTGGDPITARFMRQDNFTFQP-QFK 299
Query: 606 PFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKA 665
IV N ++N D+A RR+ ++PF N D KL+ ++ W ++G
Sbjct: 300 LTIVGNHKPVLKNVDEAARRRFNIVPFIHKPKNPDKDLESKLQGEW-PGIMYWMIQGCLE 358
Query: 666 YISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQE 725
+ +G + P V +A E + DT+ W+ + C + +L + + L K + E+
Sbjct: 359 WQREG--MPRPAVVKEATAEYFEAQDTFGQWLAERCILDPSLETKPNMLLKDFQEWCRNN 416
Query: 726 L--NYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESV 778
D KR+ +G + + + + K + ++G+ L+P
Sbjct: 417 GEPESDNKRM-----------RGMLEKTEGVRYHRHKKLGQSVRGIGLRPHLHEA 460
>gi|300909462|ref|ZP_07126923.1| P4 family prophage LambdaSa04 [Lactobacillus reuteri SD2112]
gi|300893327|gb|EFK86686.1| P4 family prophage LambdaSa04 [Lactobacillus reuteri SD2112]
Length = 751
Score = 381 bits (979), Expect = e-103, Method: Composition-based stats.
Identities = 110/565 (19%), Positives = 205/565 (36%), Gaps = 51/565 (9%)
Query: 241 RGSSKGKEIARRWSKQ-GSTYDEENFNYKWDTFDFEEIGDTAKKRST-FTSLFYHHGKLI 298
+ + ++ + + + ++ W + + G + Y+
Sbjct: 207 GNTDEARQAFQEEAAKCDPPLSKQELKNIWHS--ATKFGQRMASQEGYIPPEKYNQ---P 261
Query: 299 PKGLLASRFSDAYNKAMFSIYKKGHFLYT-------ADTKAWYKKDKNNVYIWSLTLDKI 351
L + +SD +F K YT D K W + + + DK
Sbjct: 262 NDDLQPADYSDTGESYVFVNNCKERVCYTNQSGFMWFDGKVWQESEPLALGEVQRFTDKQ 321
Query: 352 TASIMNFLVSMKEDV-------------FDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEE 398
A + + + + + ++ + + + Y ++E
Sbjct: 322 LADAQLRVTNSYKKIQQNGVTSALQAMGKTKASRTFNDEQQAAFKNYENAKAYEAFILKE 381
Query: 399 NSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPT--KELYITKST 456
S + + D+ L +G +L+ G + + ITKST
Sbjct: 382 RSTRGINGILTNSRPKLVKEINDFDADPFLLNTPNGAFNLKKGMHGQQEIQADELITKST 441
Query: 457 G-TPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGK 514
P +G + + ++ +F + +++Y VG+ +G + I G G +GK
Sbjct: 442 SCVPGNQGA--SLWQEALTTFFCGDQALINYVQEIVGLVAIGQVYLEALIIAYGSGRNGK 499
Query: 515 STLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEIN 574
ST N I G Y + A + P + + G R++I +E E +N
Sbjct: 500 STFWNTIANVLGT-YTGHLSADALTTGVRR---NVKPEMAEVKGKRLIISAELEEGKRLN 555
Query: 575 AAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK 634
+ +KQ+ D + A Y +S +P S T + N V D+ WRR IVIPF
Sbjct: 556 TSIVKQLCSTDEIYAEKKYMKPFSFTP-SHTIVLYTNYLPHVGGNDEGIWRRLIVIPFKA 614
Query: 635 PIANRD--ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDT 692
IA R+ ++AQ+L K +W ++G + I + + P KA D
Sbjct: 615 KIAKRNDIKNYAQRLTEKAGPAVLQWIIEGAQRTIQQNYRLTTPAAVEKAVNAYHADNDW 674
Query: 693 YQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIK 752
++++ C++ + ++S L + Y EY + Y R ST LK GF
Sbjct: 675 LGHFLNENCELDPSYEQKSGDLYQKYREYCQGIGEYIR---STTDFYTALKNAGFQ---- 727
Query: 753 REKIEKEWKSKRIIKGLKLKPAFES 777
+ ++ R IKGL+LK +
Sbjct: 728 ----RQHKQNGRFIKGLRLKVEADE 748
>gi|325662086|ref|ZP_08150705.1| hypothetical protein HMPREF0490_01443 [Lachnospiraceae bacterium
4_1_37FAA]
gi|325471749|gb|EGC74968.1| hypothetical protein HMPREF0490_01443 [Lachnospiraceae bacterium
4_1_37FAA]
Length = 766
Score = 381 bits (979), Expect = e-103, Method: Composition-based stats.
Identities = 112/545 (20%), Positives = 195/545 (35%), Gaps = 52/545 (9%)
Query: 262 EENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKK 321
++ W++ Y+ + G+ +SD M +
Sbjct: 241 KDEVATIWNSATHFYTTKVMTSDGYVPPEEYN-DEFGSAGMKPEDYSDIGEAKMLTREYG 299
Query: 322 GHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEP-------- 373
+T T + + D + W + FL D D E
Sbjct: 300 NELKFTTAT-DYLRYDGD---CWREDKQLAVGATEEFLDLQLADAQDAVESAVNALIAAG 355
Query: 374 -------------EDNNKNSKSPRFWF----NTDYRRQNVEENSKAKSTAQSLEAGSIFS 416
E K + +F Y + + + A + +
Sbjct: 356 VDEVTARAGGKALEKACDTPKLMKLYFMLLGAQTYLKFVQKRRDYKYIVSTLNAAKPMLA 415
Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQ--KVKPTKELYITKSTGTPFVEGEPSQEFLDLVS 474
I LD + + +++E G + E ITK T E + + D ++
Sbjct: 416 INVSELDKNPFLINTPQSTINMEKGMVGAREHNPEDLITKITACSPSEVGKT-IWEDALN 474
Query: 475 GYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
+F +E+++Y + VG+A +G + I G G +GKST N I GN Y
Sbjct: 475 TFFVGDQELIEYVQQTVGVAAVGKVFQEHMIIAYGGGANGKSTFWNTIFRVLGN-YAGKI 533
Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593
A + N P + L G R++I SE E +N A +KQ+ D + A Y
Sbjct: 534 SAEALTVNCKR---NVKPEMAELKGKRLIIASEMEEGMRLNTATVKQLCSTDEIQAEKKY 590
Query: 594 GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKY 651
+ +S P S T + N V DD WRR +VIPF+ I A+ ++A L
Sbjct: 591 KDPFSFVP-SHTLVLYTNHLPKVGANDDGIWRRLVVIPFNAKITGASDIKNYADYLYDNA 649
Query: 652 TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEES 711
W ++G + I+ P+V A E R+ D +I++CCD+ + +S
Sbjct: 650 GGYIMSWIIEGARKAIATDFKTKQPKVVEDAIESYREDNDWLGQFIEECCDVDKTFTAKS 709
Query: 712 HSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771
L ++Y + Y R ST ++++ GF +++ ++ G+ L
Sbjct: 710 GELYQAYRAHCTLNGEYIR---STSDFYSSMEKAGFN--------KRKTNKGILVMGIGL 758
Query: 772 KPAFE 776
K +
Sbjct: 759 KDGQD 763
>gi|302538856|ref|ZP_07291198.1| conserved hypothetical protein [Streptomyces sp. C]
gi|302447751|gb|EFL19567.1| conserved hypothetical protein [Streptomyces sp. C]
Length = 548
Score = 380 bits (977), Expect = e-103, Method: Composition-based stats.
Identities = 109/506 (21%), Positives = 202/506 (39%), Gaps = 41/506 (8%)
Query: 280 TAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKN 339
A++ ST + + GLL + +D N +F+ F + + WY D+
Sbjct: 64 PAQQVSTPATTPPRPDDFVQAGLLVN-LTDRGNAKLFAHLHNHRFRHV-EGLGWYVWDE- 120
Query: 340 NVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEEN 399
Y W T + A M E++ P + + + R R+
Sbjct: 121 --YRWKRTGGEKAAIWA--AGDMAEEM------PLHDPRGHFTDRELAQ---HRKRAMST 167
Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTK--ELYITKSTG 457
S K+ +A ++ D LD L G++DL TG+ KP +L+ +
Sbjct: 168 SGVKAMLSQAKASPELALDPDTLDGDKYALCTPAGVVDLRTGELRKPDPLRDLHSRATYL 227
Query: 458 TPFVEGEPSQEFLDLVSGYFESE----EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSG 513
P E P+ F ++ F + E++ + +G ++ G Q + G+G +G
Sbjct: 228 AP--EASPTPRFARFLTETFGDDDKGKEMITFVHLLLGYSITGDVGGQVLPFLYGIGANG 285
Query: 514 KSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI 573
KS LM+++ G+ Y A +M+ + + L L G R+ + SE +D+
Sbjct: 286 KSALMDIVIKILGD-YADVAPPGFLMERGKFN--EHSTELTELHGRRLFVCSELKPHDKF 342
Query: 574 NAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFD 633
+ A++K +TGGD + AR + +S P + +++ N V A+WRR +IPFD
Sbjct: 343 DEARVKLLTGGDRLKARRMRQDYFSFEP-THKLWLLGNHRPEVGTGGHAFWRRIRLIPFD 401
Query: 634 KPIAN--RDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTD 691
K + + + + A++L W ++G AY+ + P V A + D
Sbjct: 402 KVVPDHRKIDNLAEELVNHEGPGILHWMIQGAMAYLRTKPSLTGPTVVRTATQAYATTED 461
Query: 692 TYQAWIDDCCDIGEN------LWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK 745
++ +CC G+ E +L ++YS + ++ + +TR ++
Sbjct: 462 HIGRFLAECCTSGDGGEEPRDFKVEQGALYRAYSTWCQE--GEGLRPATTRAFATRIRA- 518
Query: 746 GFIGGIKREKIEKEWKSKRIIKGLKL 771
GI ++ GL L
Sbjct: 519 --EVGISSPGEMLRSNGQKFYPGLAL 542
>gi|269974625|gb|ACZ55146.1| putative DNA primase/helicase [Streptomyces sp. 36R-2-1B]
Length = 511
Score = 380 bits (975), Expect = e-103, Method: Composition-based stats.
Identities = 104/529 (19%), Positives = 197/529 (37%), Gaps = 36/529 (6%)
Query: 254 SKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNK 313
++ +D + E +++ S P GLL SD N
Sbjct: 4 AESTPRFDPHTAAQQMLDLQAAEPPALLPAQASPASQNQSAAGRPPAGLLPPHLSDRGNA 63
Query: 314 AMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEP 373
+F + F + + W+ D Y W T + L + E DLS
Sbjct: 64 RLFVQLYRDQFRHV-EGLGWFTWDG---YRWKRTGGE-----KAVLWAAGEMAEDLS--- 111
Query: 374 EDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQD 433
E + + S R ++ + K+ +A S+ D LD L
Sbjct: 112 ESDPRRVFSDREL---TAHKRKTLSTTGQKALLTQAKASPDLSVDPDTLDGDPYALCTPS 168
Query: 434 GILDLETGQKVKPTKE-LYITKSTGTPFVEGEPSQEFLDLVSGYFESE----EVMDYFTR 488
G++DL TGQ KP + +++T E + + ++ F ++ E++D+
Sbjct: 169 GVVDLHTGQLRKPDPSRDFHSRATSVAPQHME-TPRWHRFLADTFGNDAEGREMIDFLHL 227
Query: 489 CVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGK 548
+G ++ G AQ + G G +GKS L++ + G+ Y A +M +
Sbjct: 228 LLGYSITGDVGAQVLPFLHGEGKNGKSVLLDTMIQILGD-YADAAPPGFLMDR--GAFSE 284
Query: 549 ANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFI 608
+ L L G R+V+ SE ND+ + A+++ +TGGD + AR + +S P ++
Sbjct: 285 HSTELTELHGRRLVVCSELKPNDKFDEARVRLLTGGDKIKARRMRQDYFSFHPTHH-LWL 343
Query: 609 VPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAY 666
+ N V A+WRR ++PF + + R + A +L +W ++G + Y
Sbjct: 344 LGNHRPEVSTGGFAFWRRIRLVPFTRTVPAERRIDNLAFELVRDEGPGILQWLIEGARHY 403
Query: 667 ISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE----NLWEESHSLAKSYSEYR 722
+S ++ P+ A D ++ + C +L E L Y+ +
Sbjct: 404 LSTRDPLEGPDRVRLATSAYATTEDHIGRFLTERCVRDSDSPADLRVEQGLLYAEYTSWC 463
Query: 723 EQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771
+ + R ++Q + + ++ G+ L
Sbjct: 464 --NAGEGVRAATARVFATRVRQ---DLNLGSPADMIKSNGRKYYPGIAL 507
>gi|300764697|ref|ZP_07074688.1| hypothetical protein LMHG_11071 [Listeria monocytogenes FSL N1-017]
gi|300514583|gb|EFK41639.1| hypothetical protein LMHG_11071 [Listeria monocytogenes FSL N1-017]
Length = 747
Score = 379 bits (973), Expect = e-103, Method: Composition-based stats.
Identities = 125/542 (23%), Positives = 196/542 (36%), Gaps = 55/542 (10%)
Query: 262 EENFNYKWDTFDFEEIGDTAKKRST-FTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYK 320
EE W++ G K++ Y+ L + +SD + +
Sbjct: 231 EEELKAIWNS--AVNFGKKVKQQEGYIPPEQYNSD----LSLEPTDYSDLGQATVLAREY 284
Query: 321 KGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDN---- 376
+ Y+ T N W + K I E+ E+
Sbjct: 285 ECKLHYSPSTG----YLVYNGSYWEESKPKAQGVIHALTERQLEESETEIEKRTKEMVSN 340
Query: 377 --------------------NKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFS 416
+ + +Y++ V+ ++ EA +
Sbjct: 341 GAFGVLASVGPKKAVTMFNTAQRHSFDLYQHAQEYKKFAVKRRDSKYLSSALTEAKPMLE 400
Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY 476
I LLD + L DL TG+ E YITK T + Q +LD ++
Sbjct: 401 IEQRLLDVNEFLLNTPTATFDLRTGKSQDHNSEDYITKQTECAPSDANQ-QIWLDALNTI 459
Query: 477 F-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535
F +E++DY VG+A +G + I G G +GKST N+I GN Y + A
Sbjct: 460 FVGDQELIDYVQMIVGLAAIGKVYVEALIISYGEGRNGKSTFWNVISRVLGN-YSGSISA 518
Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595
+ P L G R++I +E E +N + IKQ+ D + A Y +
Sbjct: 519 DILTSQIRR---NVKPELAEAKGKRLLIAAELEEGMRLNTSNIKQLCSTDEIAAEKKYKD 575
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA-NRD-ASFAQKLETKYTL 653
+ P + T + N V D WRR IVIPF I N+D ++A L
Sbjct: 576 PFKYVP-THTLVLYTNHLPKVGAIDKGTWRRLIVIPFLATIDGNKDIKNYADYLFENAGG 634
Query: 654 EAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHS 713
+W L G K I+ + +P+V A E + D ++D+CC+ + E+S
Sbjct: 635 AILQWILDGAKKVIAADFHLTVPQVVANAISEYKTANDWLGHFLDECCETAVDFEEKSGE 694
Query: 714 LAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773
L Y + + Y R S+ L+ GF KR + K K I GL+LK
Sbjct: 695 LYAEYRAFCTRTGEYIR---SSADFYTALEAGGF----KRRRTNKGNK----IVGLQLKS 743
Query: 774 AF 775
F
Sbjct: 744 EF 745
>gi|227530259|ref|ZP_03960308.1| phage DNA polymerase [Lactobacillus vaginalis ATCC 49540]
gi|227349813|gb|EEJ40104.1| phage DNA polymerase [Lactobacillus vaginalis ATCC 49540]
Length = 749
Score = 379 bits (973), Expect = e-102, Method: Composition-based stats.
Identities = 111/557 (19%), Positives = 202/557 (36%), Gaps = 52/557 (9%)
Query: 251 RRWSKQGSTYDE----ENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASR 306
+ + ++ + D + W++ +K + L +
Sbjct: 214 QAFQEEAAKCDPPLSKQELKTIWNSAIKFGQRMANQKDYIPPEKYNQ----PNDDLQPAD 269
Query: 307 FSDAYNKAMFSIYKKGHFLYT-------ADTKAWYKKDKNNVYIWSLTLDKITASIM--- 356
+SD +F K YT D K W + + + DK A
Sbjct: 270 YSDTGESYVFVNNCKERVCYTNQSGFMWFDDKVWQESEPLALGEVQRFTDKQLADAQLRV 329
Query: 357 ----------NFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTA 406
+++ + ++ + + + Y ++E S
Sbjct: 330 TQSYQAIQNNGVAKALQTMGKTKASRTFNDEQQAAFKNYENAKAYEAFILKERSTRGING 389
Query: 407 QSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTG-TPFVEG 463
+ + D+ L +G +L+ G + + ITKST P +G
Sbjct: 390 ILTNSRPKLVKEINDFDADPFLLNTPNGPFNLKKGMHGQQEIQADELITKSTSCVPGNQG 449
Query: 464 EPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIK 522
+ + ++ +F + +++Y VG+ +G + I G G +GKST N I
Sbjct: 450 A--SLWQEALTTFFCGDQALINYVQEIVGLVAIGQVYLEALIIAYGSGRNGKSTFWNTIA 507
Query: 523 YAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMT 582
G Y + A + P + + G R++I +E E +N + +KQ+
Sbjct: 508 NVLGT-YTGHLSADALTTGVRR---NVKPEMAEVKGKRLIISAELEEGKRLNTSIVKQLC 563
Query: 583 GGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD-- 640
D + A Y +S +P S T + N V D+ WRR IVIPF+ IA R+
Sbjct: 564 STDEIYAEKKYMKPFSFTP-SHTIVVYTNYLPHVGGNDEGIWRRLIVIPFNAKIAKRNDI 622
Query: 641 ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDC 700
++AQ L K +W ++G + I + + P KA D ++++
Sbjct: 623 KNYAQYLTEKAGPAVLQWIIEGAQRTIQQNYQLTTPAAVTKAVRAYHADNDWLGHFLNEN 682
Query: 701 CDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEW 760
C++ + ++S L + Y EY + Y R ST + LK GF +
Sbjct: 683 CELDPSYEQKSGDLYQKYREYCQGIGEYTR---STTDFYMALKNAGFQ--------RQHK 731
Query: 761 KSKRIIKGLKLKPAFES 777
+S R IKGL+LK +
Sbjct: 732 QSGRFIKGLRLKVDADE 748
>gi|326791702|ref|YP_004309523.1| phage/plasmid primase, P4 family [Clostridium lentocellum DSM 5427]
gi|326542466|gb|ADZ84325.1| phage/plasmid primase, P4 family [Clostridium lentocellum DSM 5427]
Length = 730
Score = 378 bits (970), Expect = e-102, Method: Composition-based stats.
Identities = 104/444 (23%), Positives = 174/444 (39%), Gaps = 22/444 (4%)
Query: 306 RFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKED 365
R D N +I K + D WY N + +D + + M D
Sbjct: 277 RLDDTDNAHTMAIMYKDRLCFAYDMNKWYLY--NGIKWEEDRVDGVRILAGKMIERMGHD 334
Query: 366 -VFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDS 424
LS+ PE K ++ + + R ++S E + I S +
Sbjct: 335 FALILSKMPEGREKKKQTFLYNMHLKNCRSYRGKSSILN------ETKHLLPIVSTHFNQ 388
Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVM 483
+ +G D+ Q + Y+++ T +VE + + + F E+M
Sbjct: 389 PRHLINMPNGTYDINDKQLKEHRATDYLSQVTNVAYVENIAAPNWEKFIKQIFLGDRELM 448
Query: 484 DYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP 543
Y + +G +L G Q G G +GK +++ Y N YV +A I Q R
Sbjct: 449 RYVQKAIGYSLTGFTHEQCMFIGYGDGANGKGVFKDILSYIL-NDYVKCPQAETISQIR- 506
Query: 544 PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPAS 603
+ +A+P +I LM +R+V+ E+N+ N IKQ+TG D +TAR Y S P
Sbjct: 507 -QGSEASPDIINLMDARLVVCVESNKGVRFNEGLIKQLTGEDKVTARRLYCEPTSFLP-Q 564
Query: 604 FTPFIVPNKHLFVRNPDDAWWRRYIVIPF--DKPIANRDASFAQKLETKYTLEAKKWFLK 661
F ++ N V D WRR VIPF D P +D +KL K W ++
Sbjct: 565 FKLWLFTNHMPEVVGTDKGIWRRLKVIPFKLDLPEEKKDKHLKEKL-MKEVGGILWWCIQ 623
Query: 662 GVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEY 721
G+ Y+ +GL P + E ++ +DT ++ +C E ++ L Y E+
Sbjct: 624 GIHLYLEEGLK--EPPAVINLVHEFKEESDTLGLFLKECTIHKEGSKVQAKDLYTKYVEW 681
Query: 722 REQELNYDRKRISTRTVTLNLKQK 745
+ L++K++
Sbjct: 682 CRANNEVPDNK---TRFGLDMKKR 702
>gi|285019151|ref|YP_003376862.1| bacteriophage related protein [Xanthomonas albilineans GPE PC73]
gi|283474369|emb|CBA16870.1| putative bacteriophage related protein [Xanthomonas albilineans]
Length = 754
Score = 377 bits (969), Expect = e-102, Method: Composition-based stats.
Identities = 113/535 (21%), Positives = 178/535 (33%), Gaps = 54/535 (10%)
Query: 260 YDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDA-------YN 312
Y EN WD D G H I +D
Sbjct: 263 YPPENAVAGWDAADAVAEGFDIVSFLAHGPRLQMHA--IDDDAAPVVSNDESVAGTEDAL 320
Query: 313 KAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEE 372
F+ + Y A W D W ++ + D ++
Sbjct: 321 ALAFTRRYHRDWRYVATWGRWLVWDGQR---WRTEDTLAATDLIRSVCRHAAVHADNAKI 377
Query: 373 PEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQ 432
+ + A + T+ D+ L
Sbjct: 378 A--------------------TKLASAGTVSGVERLARADRRHAATTAEWDADPWLLNTP 417
Query: 433 DGILDLETGQKVKPTKELYITK-STGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVG 491
G++DL TG++ + ITK +T TP Q FL ++ + E+ Y R VG
Sbjct: 418 GGVVDLRTGRRRTHERADRITKITTATPSDGCPIWQRFLAEITD--QDNELQAYLQRMVG 475
Query: 492 MALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANP 551
AL G + + G G +GKS +N + FG+ Y NA M+ R A +
Sbjct: 476 YALTGSTQEHALFFLYGTGANGKSVFVNTLVTIFGD-YAANAPMDTFMETR---ADRHPT 531
Query: 552 SLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPN 611
+ L GSR V ET + +K+K +TGGD ++AR + + P F F+ N
Sbjct: 532 DMAGLRGSRFVAAIETEQGRRWAESKLKNLTGGDKISARFMRQDFFEFFP-QFKLFVAGN 590
Query: 612 KHLFVRNPDDAWWRRYIVIPF--DKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISK 669
+RN D+A RR +IPF P RD +KL + W ++G +
Sbjct: 591 HRPAIRNIDEAMKRRLHLIPFTITVPPERRDKHLQEKLLNER-DGILAWAVQGCLYWQRL 649
Query: 670 GLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYD 729
G + P+ L+A EE + D WI + C N + L + + + +
Sbjct: 650 G-RLAPPQQVLQATEEYFEAEDALGRWIGERCVRHVNAKSLTAELFNDWKLWADDAGEFI 708
Query: 730 RKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDNSNI 784
S + L +G + R +G+ LK D S+
Sbjct: 709 G---SQKRFADLLLTRGLEKW-------RNSTGLRGFRGVGLKHLHTRADTASDN 753
>gi|134297351|ref|YP_001121086.1| hypothetical protein Bcep1808_3261 [Burkholderia vietnamiensis G4]
gi|134140508|gb|ABO56251.1| phage/plasmid primase, P4 family [Burkholderia vietnamiensis G4]
Length = 775
Score = 377 bits (968), Expect = e-102, Method: Composition-based stats.
Identities = 100/465 (21%), Positives = 175/465 (37%), Gaps = 45/465 (9%)
Query: 313 KAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEE 372
FS + Y W K W +M + +
Sbjct: 342 ALTFSGRYAQDWRYV---ALWGKWVFWTGKRWQTEETLAAHHLM-------RQICREAAL 391
Query: 373 PEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQ 432
D+++ + + + + + + T+D D+ L
Sbjct: 392 KADSHRVAA-------------KLASSGTVAGLERLARSDRRHAATADEWDADPWLLNTP 438
Query: 433 DGILDLETGQKVKPTKELYITK-STGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVG 491
G+++L+ G + +TK +T TP + ++F+ V+G + + Y R G
Sbjct: 439 GGVVNLKNGVLRSHDRLDRLTKITTATPAGDCPTWRQFIHEVTG--GDQALQAYLARMAG 496
Query: 492 MALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANP 551
AL G + + G G +GKS +N + G+ Y NA M+ R +
Sbjct: 497 YALTGSTREHALFFLYGTGANGKSVFVNTLATILGD-YATNAPMDTFMETR---TDRHPT 552
Query: 552 SLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPN 611
+ L G+R V ET + +K+K +TGGD ++AR + + P F + N
Sbjct: 553 DMASLRGARFVAAIETEQGRRWAESKVKSLTGGDKISARFMRQDFFEFMP-QFKLIVAGN 611
Query: 612 KHLFVRNPDDAWWRRYIVIPF--DKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISK 669
+RN D+A RR +IPF P RD QKL + W ++G + +
Sbjct: 612 HKPAIRNIDEAMKRRLHLIPFTITVPPERRDKHLQQKLLAER-DGILAWAVQGCLEWQRQ 670
Query: 670 GLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYD 729
G +D P+ L A +E + D ++D+ C E ++ Y +RE+
Sbjct: 671 G-RLDPPQQVLDATDEYFEEEDAIGEFLDEDCQQSPVAREAISAI---YQRWRERAERRG 726
Query: 730 RKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPA 774
++R +T L +GF R ++ K+ + GL LKP
Sbjct: 727 EYVGTSRWLTQQLINRGF----ARTRLHGGAKA---LSGLSLKPR 764
>gi|254384016|ref|ZP_04999362.1| conserved hypothetical protein [Streptomyces sp. Mg1]
gi|194342907|gb|EDX23873.1| conserved hypothetical protein [Streptomyces sp. Mg1]
Length = 495
Score = 377 bits (967), Expect = e-102, Method: Composition-based stats.
Identities = 110/501 (21%), Positives = 199/501 (39%), Gaps = 41/501 (8%)
Query: 297 LIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIM 356
I GLL + +D N +F+ F + + WY D+ Y W T + A
Sbjct: 17 FIQTGLLHN-LTDRGNAKLFAHLHHDRFRHV-EGLGWYVWDE---YRWKRTGGEKAAIWA 71
Query: 357 NFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFS 416
M ED+ P + + + R R+ S K+ +A +
Sbjct: 72 --AGDMAEDL------PAHDPRGVFTDRELAQ---HRKRTMSTSGVKAMLTQAKASPELA 120
Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQKVKPTK--ELYITKSTGTPFVEGEPSQEFLDLVS 474
+ D LD L G++DL TG KP +L+ + P E P+ F +
Sbjct: 121 LDPDTLDGDKYALCTPAGVVDLRTGDLHKPDPTRDLHSRATHLAP--EAMPTPRFHCFLK 178
Query: 475 GYFESE----EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530
F + E++ + +G ++ G Q + GVG +GKS L++++ G+ Y
Sbjct: 179 QTFGDDDKGKEMIHFLHLLLGYSITGDVGGQVLPFLYGVGANGKSALLDVVIKILGD-YA 237
Query: 531 INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR 590
A +M+ + + L L G R+ + SE +D+ + A++K +TGGD + AR
Sbjct: 238 DVAPPGFLMERGKFN--EHSTELTELHGRRLFVCSELKPHDKFDEARVKLLTGGDRLKAR 295
Query: 591 LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDASFAQKLE 648
+ +S P + +++ N V A+WRR +IPF+K + + + + A+ L
Sbjct: 296 RMRQDFFSFEP-THKLWLLGNHRPEVGTGGHAFWRRIRLIPFEKVVPDHRKIDNLAETLV 354
Query: 649 TKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIG---- 704
+ W ++G KAY++ + P V A + D ++ +CC G
Sbjct: 355 QEEGPGILHWMIQGAKAYLASKPPLTGPSVVRTATQAYATTEDHIGRFLAECCTTGAELP 414
Query: 705 --ENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKS 762
+L E +L ++YS + + +TR ++ G+
Sbjct: 415 DPRDLKVEQGALYRAYSAWCLD--GEGLRPATTRAFATRIRA---EVGVASPNEMLRSNG 469
Query: 763 KRIIKGLKLKPAFESVDDNSN 783
++ GL L E ++N
Sbjct: 470 QKFYPGLALLADEEQTPRDAN 490
>gi|273810442|ref|YP_003344913.1| P4 family phage/plasmid primase [Xylella phage Xfas53]
gi|257097817|gb|ACV41123.1| P4 family phage/plasmid primase [Xylella phage Xfas53]
Length = 845
Score = 377 bits (967), Expect = e-102, Method: Composition-based stats.
Identities = 106/520 (20%), Positives = 189/520 (36%), Gaps = 57/520 (10%)
Query: 286 TFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWS 345
+ ++ +++P+ L +DA N + + W N W
Sbjct: 350 SPPAMPAVKKRVVPEAL--HLVTDAANAGRIAKRHGKQLM--WTGNRWLVW---NDRYWE 402
Query: 346 LTL-------DKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEE 398
+ A I + D + N K + + W +E
Sbjct: 403 SDPVGAHALMADLPALIRAEAEQWRLKATDTEDGKAKNEKIAAALDAWSKKSEMGSAIET 462
Query: 399 NSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGT 458
+ + + LD++ L +G +DL TG E YIT+
Sbjct: 463 LERLLKKR--------LRVPQEQLDTNPWLLNCANGTVDLRTGTLKAHRPEDYITRVVPI 514
Query: 459 PFVEGEPSQEFLDLVSGYF-----ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSG 513
F + EF+ ++ S+ + + R G G + Q+F + G G +G
Sbjct: 515 NFDPKATAPEFITTLARITCEYGESSKPLCAFLQRWFGYCATGEVREQKFAVLYGDGNNG 574
Query: 514 KSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI 573
KSTL++LI G + A +N P + ++ L G R+V E+ E + +
Sbjct: 575 KSTLLDLITGILGRYSGVAAPGLLTGKNGP----QHPNAIADLAGRRMVTTHESGEGEVL 630
Query: 574 NAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFD 633
+KQ TGGD + AR YG + P + ++ N ++ D WRR ++IPF
Sbjct: 631 REDFVKQATGGDTLKARYLYGEFFEFKP-THKLQLLTNHKPVIKGQDSGIWRRIMLIPFK 689
Query: 634 KPIAN------------RDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLK 681
RD A+KL T+ W + G + GL P++ L
Sbjct: 690 AKFDAAEGEEIGNGKYLRDMRIAEKLATERE-GVLAWIVAGAVEWYKNGLRP--PDIVLA 746
Query: 682 AKEEERQGTDTYQAWIDDCCDIGENLWEE-----SHSLAKSYSEYREQELNYDRKRISTR 736
A E+ ++ D +ID+ C++G + E+ L +Y+++ + +S
Sbjct: 747 ASEDYKEEQDRVGQFIDEECELGADKEEKLSTPMGGGLYPAYTQWCKASGVC---ALSKT 803
Query: 737 TVTLNLKQK--GFIGGIKREKIEKEWKSKRIIKGLKLKPA 774
LK++ GF +E + +I G+ L A
Sbjct: 804 RFLDGLKRRVPGFKKKYVDRIVEGKRHKFTVIIGVALVNA 843
>gi|268610656|ref|ZP_06144383.1| Phage DNA polymerase [Ruminococcus flavefaciens FD-1]
Length = 740
Score = 376 bits (966), Expect = e-102, Method: Composition-based stats.
Identities = 123/571 (21%), Positives = 199/571 (34%), Gaps = 63/571 (11%)
Query: 240 TRGSSKGKEIARRWSKQ-GSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLI 298
+ + + + D++ W + + G + + +
Sbjct: 200 FGVTEEAHAKFLEKAAECDPPLDDDELESIWQS--ACKFGTKVTSQEGYVP----PEEYG 253
Query: 299 PKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNF 358
+ ++ FSD +T T + N W + +++
Sbjct: 254 EEPMIPDDFSDVGEARTLVNCYGDELAFTIATN----YLRYNGTYWEESEQAAVMAMIEH 309
Query: 359 ----LVSMKEDVFDLSEEPEDNNKNSKSPRF-------------------WFNTDYRRQN 395
L + + E E + + D R+
Sbjct: 310 TDVQLAEADKQISAALEALEKVGISKQDAEKGGKKFESDLGLGEMKLYSRMKRYDVFRKF 369
Query: 396 VEENSKAKSTAQSLEA-GSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP----TKEL 450
V + +S +L+A + + LD + L G DL G +
Sbjct: 370 VMKYRNIRSLNNALDAAKPLVLHNPEQLDGNPMLLNTPGGTYDLAKG--LDGWKATDPAD 427
Query: 451 YITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGV 509
ITK T GE Q + D + +F + ++DY G+ L+G + I G
Sbjct: 428 LITKVTTVVPN-GEGQQLWADALQVFFCGDQSLIDYVQMICGLCLIGKVYTEAMIIAYGD 486
Query: 510 GGSGKSTLMNLIKYAFGNQYV-INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN 568
G +GKST N+I G+ I+A+A + R P + L G R++I +E
Sbjct: 487 GRNGKSTFWNVIYKVLGSYSGNISADALTVNCKR-----NVKPEMAELKGKRLIIAAELQ 541
Query: 569 ENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYI 628
E +N + +KQ+ D + A + +S P S T + N V DD WRR I
Sbjct: 542 EGMRLNTSVVKQLCSTDPIFAEKKFKAPFSFEP-SHTLVLYTNHLPKVAASDDGTWRRLI 600
Query: 629 VIPFDKPIAN--RDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEE 686
VIPF I ++ Q L W ++G ++ VD P+ L A
Sbjct: 601 VIPFHAKIEGSADIKNYTQYLIDNAGGSVLSWLIEGAMKVVAADFKVDRPQCVLDAIGAY 660
Query: 687 RQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746
R G D A+I+DCC+ + E+S L K Y EY + Y R ST L+Q G
Sbjct: 661 RDGNDWLGAFINDCCETDASYQEKSGDLYKRYREYCSESGEYVR---STTDFYTALEQAG 717
Query: 747 FIGGIKREKIEKEWKSKRIIKGLKLKPAFES 777
F K+ S + I GL LK F
Sbjct: 718 F--------KRKKMNSGKYIVGLCLKFDFLD 740
>gi|259502601|ref|ZP_05745503.1| P4 family prophage LambdaSa04 [Lactobacillus antri DSM 16041]
gi|259169416|gb|EEW53911.1| P4 family prophage LambdaSa04 [Lactobacillus antri DSM 16041]
Length = 751
Score = 375 bits (963), Expect = e-101, Method: Composition-based stats.
Identities = 110/558 (19%), Positives = 199/558 (35%), Gaps = 54/558 (9%)
Query: 251 RRWSKQGSTYDE----ENFNYKWDTFDFEEIGDTAKKRST-FTSLFYHHGKLIPKGLLAS 305
+ + ++ + D + W + + G + Y+ L
Sbjct: 214 QAFQEEAAKCDPPLSKQELKNIWHS--ATKFGQRMASQKGYIPPEEYNQ---PNDDLQPD 268
Query: 306 RFSDAYNKAMFSIYKKGHFLYT-------ADTKAWYKKDKNNVYIWSLTLDKITASIMNF 358
+SD +F K YT D K W + + + DK
Sbjct: 269 DYSDTGESYVFVNNCKERVCYTNQSGFMWFDGKVWQESEPLALGEVQRFTDKQLTDAQLR 328
Query: 359 LVSMKEDV-------------FDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKST 405
+ + + + + ++ + + + Y ++E S
Sbjct: 329 VTNSYKKIQQNGVTSALQAMGKTKASRTFNDEQLAAFKDYENAKAYEAFILKERSTRGIN 388
Query: 406 AQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTG-TPFVE 462
+ + D++ L G +L G + + ITKST P +
Sbjct: 389 GILTNSRPKLVKEINEFDANPFLLNTPTGPFNLRKGMHGQQEIQADELITKSTSCVPGSQ 448
Query: 463 GEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLI 521
G + + ++ +F + +++Y VG+ +G + I G G +GKST N I
Sbjct: 449 GA--SLWQEALTTFFCGDQALINYVQEIVGLVAIGQVYLEALIIAYGSGRNGKSTFWNTI 506
Query: 522 KYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM 581
G Y + A + P + + G R++I +E E +N + +KQ+
Sbjct: 507 ANVLGT-YTGHLSADALTTGVRR---NVKPEMAEVKGKRLIISAELEEGKRLNTSIVKQL 562
Query: 582 TGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD- 640
D + A Y +S +P S T + N V D+ WRR IVIPF IA R+
Sbjct: 563 CSTDEIYAEKKYMKPFSFTP-SHTIVLYTNYLPHVGGNDEGIWRRLIVIPFKATIAKRND 621
Query: 641 -ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD 699
++AQ L K +W ++G + I + + P KA D ++++
Sbjct: 622 IKNYAQYLTEKAGPAVLQWIIEGAQRTIQQNYQLTTPAAVTKAVRAYHADNDWLGHFLNE 681
Query: 700 CCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKE 759
C++ + ++S L + Y EY + Y R ST LK GF +
Sbjct: 682 NCELNPSYEQKSGDLYQKYREYCQGIGEYIR---STTDFYTALKNAGFQ--------RQH 730
Query: 760 WKSKRIIKGLKLKPAFES 777
++ R IKGL+LK +
Sbjct: 731 KQNGRFIKGLRLKVDDDE 748
>gi|220920024|ref|YP_002495326.1| phage/plasmid primase, P4 family [Methylobacterium nodulans ORS
2060]
gi|219952854|gb|ACL63243.1| phage/plasmid primase, P4 family [Methylobacterium nodulans ORS
2060]
Length = 482
Score = 375 bits (963), Expect = e-101, Method: Composition-based stats.
Identities = 99/461 (21%), Positives = 172/461 (37%), Gaps = 47/461 (10%)
Query: 316 FSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPED 375
F+ Y DT +WY+ V + + + +
Sbjct: 55 FAEIHGERLRYCHDTGSWYEW--TGVAWRQNRVGMAFQWARELVRQLIAN---------- 102
Query: 376 NNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGI 435
+ R + S A + F++T++ D+ LG G
Sbjct: 103 ------------ESPKARYLASKTSFAAGVEKFCRHDRTFAVTAETWDADRWLLGTPGGT 150
Query: 436 LDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEE-VMDYFTRCVGMAL 494
+DL TG+ + + ITK T +L ++ +E + + + G AL
Sbjct: 151 VDLRTGRLREADQGERITKLTAVAPARLPDCPLWLAFLTQATGGDEGLTRFLRQWCGYAL 210
Query: 495 LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLI 554
G + + G GG+GKS +N++ +Y A ++ + +
Sbjct: 211 TGTVSEHALVFVYGPGGNGKSVFLNVLTGIL-AEYAKTAAMDTFTASK---GDRHPTDMA 266
Query: 555 RLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHL 614
L G+R+V SET E AKIKQ+TGGD +TAR + ++ +P +F IV N
Sbjct: 267 MLRGARLVTASETEEGRPWAEAKIKQLTGGDPVTARFMRQDFFTFTP-TFKLTIVGNHQP 325
Query: 615 FVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD 674
+RN DDA RR+ ++PF + D KL ++ +W ++G + GL
Sbjct: 326 LLRNVDDAARRRFNIVPFTRKPERPDPHLEAKLRAEW-PAILRWMIEGCLDWQQNGLVR- 383
Query: 675 IPEVCLKAKEEERQGTDTYQAWIDDCCDI---GENLWEESHSLAKSYSEYREQELNYDRK 731
P +A E D WI D C + + W+ L S+ EY + +
Sbjct: 384 -PASVTEATEAYFAEQDLLGQWIADECVVRQGDPHCWDRIADLYASWCEYARAAGD---E 439
Query: 732 RISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLK 772
+ + +++KGF K + G+++K
Sbjct: 440 PGTVKAFGPAMRRKGFQD--------KRTNQAKGFAGIRVK 472
>gi|167746058|ref|ZP_02418185.1| hypothetical protein ANACAC_00753 [Anaerostipes caccae DSM 14662]
gi|167654573|gb|EDR98702.1| hypothetical protein ANACAC_00753 [Anaerostipes caccae DSM 14662]
Length = 747
Score = 375 bits (962), Expect = e-101, Method: Composition-based stats.
Identities = 113/565 (20%), Positives = 199/565 (35%), Gaps = 56/565 (9%)
Query: 240 TRGSSKGKEIARRWSKQ-GSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLI 298
+ K +I ++ ++ W + + G + + + S +
Sbjct: 207 YGNTEKAHDIYLEKAQLCNPPLEDSELALIWSS--AVKFGKKVQSQVGYVSPEEFNKGF- 263
Query: 299 PKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNF 358
L +SD + S G ++T D+ + + D + W+ + + F
Sbjct: 264 --SLKPDDYSDIGQAKVLSREYAGELVFT-DSTDYMRYDGTH---WAESKQMAVGACEEF 317
Query: 359 LVSMKEDVFDLSEEPE------------------------DNNKNSKSPRFWFNTDYRRQ 394
L ++ E+ + D F + Y
Sbjct: 318 LDEQLKEAIAAVEKAKKMLLDAGIDKDTVMAGGKALEKAIDEGSEKAFKEFVIASKYYAF 377
Query: 395 NVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITK 454
++ T+ A + DS L D DL+ G + ITK
Sbjct: 378 VMKRRDMKFVTSALQAAKPMLLKKIADFDSQEFLLNAPDATYDLQDGSSKEHAAADLITK 437
Query: 455 STGTPFVEGEPSQEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSG 513
T E + D + +F +E++DY + VG++ +G + + G G +G
Sbjct: 438 MTAVSPS-TEGMDLWKDALDSFFCCDKELIDYVQQIVGLSAIGKVYVEALVIAYGEGSNG 496
Query: 514 KSTLMNLIKYAFGNQY-VINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDE 572
KST N I G I+A+A + R P + L G R+VI +E E
Sbjct: 497 KSTFWNTIARVLGTYSGTISADALTVGCKR-----NVKPEMAELKGKRLVIAAELEEGMR 551
Query: 573 INAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF 632
+N + +KQ+ D +TA Y + + P + T + N V DD WRR IVIPF
Sbjct: 552 LNTSIVKQLCSTDEVTAEKKYKDPFKYVP-THTLVLYTNHLPRVGANDDGIWRRLIVIPF 610
Query: 633 DKPIANRD--ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGT 690
+ I ++A L W + G I + P+V A + R+
Sbjct: 611 NAKITGSSDRKNYADYLYENAGGAVLTWIIDGAAKAIKNKYKLKTPKVVEDAINKYRENN 670
Query: 691 DTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGG 750
D + ++++CC++ ++S + Y Y + Y R ST L+ GF
Sbjct: 671 DWFSTFVEECCEVDATYTQKSGEFYQEYRSYCARTGEYTR---STTDFYTALENAGFN-- 725
Query: 751 IKREKIEKEWKSKRIIKGLKLKPAF 775
K+ K + G++LK F
Sbjct: 726 ------RKKTKGCNYVLGIRLKSDF 744
>gi|300909417|ref|ZP_07126878.1| P4 family prophage LambdaSa04 [Lactobacillus reuteri SD2112]
gi|300893282|gb|EFK86641.1| P4 family prophage LambdaSa04 [Lactobacillus reuteri SD2112]
Length = 751
Score = 374 bits (961), Expect = e-101, Method: Composition-based stats.
Identities = 109/558 (19%), Positives = 201/558 (36%), Gaps = 54/558 (9%)
Query: 251 RRWSKQGSTYDE----ENFNYKWDTFDFEEIGDTA-KKRSTFTSLFYHHGKLIPKGLLAS 305
+ + ++ + D + W + + G ++ Y+ L +
Sbjct: 214 QAFQEEAAKCDPPLSKQELKNIWHS--ATKFGQRMANQKDYIPPEKYNQ---PNDDLQPA 268
Query: 306 RFSDAYNKAMFSIYKKGHFLYT-------ADTKAWYKKDKNNVYIWSLTLDKITASIMNF 358
+SD +F K YT D K W + + + DK
Sbjct: 269 DYSDTGESYVFVNNCKERVCYTNQSGFMWFDGKVWQESEPLALGEVQRFTDKQLTDAQLR 328
Query: 359 LVSMKEDV-------------FDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKST 405
+ + + + + ++ + + + Y ++E S
Sbjct: 329 VTNSYKKIQQNGVTSALQAMGKTKASRTFNDEQQAAFKNYENAKAYEAFILKERSTRGIN 388
Query: 406 AQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTG-TPFVE 462
+ + D+ L +G +L+ G + + ITKST P +
Sbjct: 389 GILTNSRPKLVKEINDFDADPFLLNTPNGPFNLKKGMHGQQEIQADELITKSTSCIPGNQ 448
Query: 463 GEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLI 521
G + + ++ +F + +++Y VG+ +G + I G G +GKST N I
Sbjct: 449 GA--SLWQEALTTFFCGDQALINYVQEIVGLVAIGQVYLEALIIAYGSGRNGKSTFWNTI 506
Query: 522 KYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM 581
G Y + A + P + + G R++I +E E +N + +KQ+
Sbjct: 507 ANVLGT-YTGHLSADALTTGVRR---NVKPEMAEVKGKRLIISAELEEGKRLNTSIVKQL 562
Query: 582 TGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD- 640
D + A Y +S +P S T + N V D+ WRR IVIPF IA R+
Sbjct: 563 CSTDEIYAEKKYMKPFSFTP-SHTIVLYTNYLPHVGGNDEGIWRRLIVIPFKATIAKRND 621
Query: 641 -ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD 699
++AQ L K +W ++G + I + + P KA D ++++
Sbjct: 622 IKNYAQYLTEKAGPAVLQWIIEGAQRTIQQNYRLTTPAAVEKAVNAYHADNDWLGHFLNE 681
Query: 700 CCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKE 759
C++ ++S L + Y EY + Y R ST LK GF +
Sbjct: 682 KCELNPEYEQKSGDLYQKYREYCQGIGEYIR---STTDFYTALKNAGFQ--------RQH 730
Query: 760 WKSKRIIKGLKLKPAFES 777
++ R I+GL+LK +
Sbjct: 731 KQNGRFIEGLRLKVDADE 748
>gi|71900480|ref|ZP_00682610.1| Phage/plasmid primase P4, C-terminal [Xylella fastidiosa Ann-1]
gi|71729720|gb|EAO31821.1| Phage/plasmid primase P4, C-terminal [Xylella fastidiosa Ann-1]
Length = 845
Score = 374 bits (961), Expect = e-101, Method: Composition-based stats.
Identities = 105/520 (20%), Positives = 186/520 (35%), Gaps = 57/520 (10%)
Query: 286 TFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWS 345
+ ++ +++P+ L +DA N + + W N W
Sbjct: 350 SPPAMPAVKKRVVPEAL--HLVTDAANAGRIAKRHGKQLM--WTGNRWLVW---NDRYWE 402
Query: 346 LTL-------DKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEE 398
+ A I + D + N K + + W +E
Sbjct: 403 SDPVGAHALMADLPALIRAEAEQWRLKATDTEDGKAKNEKIAAALDAWSKKSEMGSAIET 462
Query: 399 NSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGT 458
+ + + LD++ L +G +DL TG E YIT+
Sbjct: 463 LERLLKKR--------LRVPQEQLDTNPWLLNCANGTVDLRTGTLKAHRPEDYITRVVPI 514
Query: 459 PFVEGEPSQEFLDLVSGYF-----ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSG 513
F + EF+ ++ S+ + + R G G + Q+F + G G +G
Sbjct: 515 NFDPKATAPEFITTLARITCEYGESSKPLCAFLQRWFGYCATGEVREQKFAVLYGDGNNG 574
Query: 514 KSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI 573
KSTL++LI G + A +N P + ++ L G R+V E+ E + +
Sbjct: 575 KSTLLDLITGILGRYSGVAAPGLLTGKNGP----QHPNAIADLAGRRMVTTHESGEGEVL 630
Query: 574 NAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFD 633
+KQ TGGD + AR YG + P + ++ N ++ D WRR ++IPF
Sbjct: 631 REDFVKQATGGDTLKARYLYGEFFEFKP-THKLQLLTNHKPVIKGQDSGIWRRIMLIPFK 689
Query: 634 KPIA------------NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLK 681
RD A+KL + W + G + GL P++ L
Sbjct: 690 AKFDAAEGEEIGNGKYPRDMRIAEKLAAERE-GVLAWIVAGAVEWYKNGLRP--PDIVLA 746
Query: 682 AKEEERQGTDTYQAWIDDCCDIGENLWEE-----SHSLAKSYSEYREQELNYDRKRISTR 736
A E+ ++ D +ID+ C+ G E+ L +Y+++ + +S
Sbjct: 747 ASEDYKEEQDRVGQFIDEECETGVEKEEKLSTPMGGGLYPAYTQWCKASGVC---ALSKV 803
Query: 737 TVTLNLKQK--GFIGGIKREKIEKEWKSKRIIKGLKLKPA 774
LK++ GF +E + +I G+ L A
Sbjct: 804 RFLDGLKRRVPGFKKKYVDRIVEGKRHKFTVIIGVSLVNA 843
>gi|207725439|ref|YP_002255835.1| bacteriophage-related protein [Ralstonia solanacearum MolK2]
gi|206590675|emb|CAQ37637.1| bacteriophage-related protein [Ralstonia solanacearum MolK2]
Length = 769
Score = 374 bits (960), Expect = e-101, Method: Composition-based stats.
Identities = 105/521 (20%), Positives = 182/521 (34%), Gaps = 50/521 (9%)
Query: 262 EENFNYKWDTFDFE----EIGDTAKKRSTFTSLFYHHGKLIPKGL-LASRFSDAYNKAMF 316
++ WD D +IG + + L ++ F
Sbjct: 276 PDDKPEGWDAADAIEEDFDIGGYLAAGARVPVTPEVDDTVSADVLEGVDWETEDGLATAF 335
Query: 317 SIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDN 376
+ + Y + W K W+ + ++
Sbjct: 336 TRRYGDDWRYCS---LWGKWLVWTGVRWNHD-----------------QLLYVTHLSRGI 375
Query: 377 NKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGIL 436
+ + T ++ + +S + + + + T+D D+ L G++
Sbjct: 376 CRAASLKA---QTPRQKAKLAGSSTIAAVEKIARSDPKHAATADEWDADVWALNTPGGVV 432
Query: 437 DLETGQKVKPTKELYITK-STGTP-FVEGEPSQEFLDLVSGYFESE-EVMDYFTRCVGMA 493
DL TG +E +TK +T TP GE +L + ++ Y R G A
Sbjct: 433 DLRTGNLRAHRREDRMTKVTTATPRGRNGEGCPSWLAFIGDITGGNTDLAAYLQRMAGYA 492
Query: 494 LLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL 553
L G + + G G +GKS +N + G+ Y +NA M+ R A + +
Sbjct: 493 LTGSTQEHALFFLYGTGANGKSVFVNTLATILGD-YAVNAAMDTFMETR---ADRHPTDM 548
Query: 554 IRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKH 613
L G+R V ET + +K+K +TGGD ++AR + + P F F+ N
Sbjct: 549 AGLRGARFVAAIETEQGRRWAESKVKNLTGGDKISARFMRQDFFEFFP-QFKLFVAGNHK 607
Query: 614 LFVRNPDDAWWRRYIVIPF--DKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGL 671
+RN D+A RR +IPF P RD QKL + W ++G + G
Sbjct: 608 PAIRNIDEAMKRRLHLIPFTITVPPERRDKHLQQKLLAER-DGILAWAVQGCLDWQRLG- 665
Query: 672 DVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRK 731
+ P+ L A EE + D W+D+ C N + L + ++ E +
Sbjct: 666 RLQPPQQVLDATEEYFEAEDALGRWLDERCVREANAKTLTAELFNDWKQWAEAAGEFAG- 724
Query: 732 RISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLK 772
S + L +G + R +G+ LK
Sbjct: 725 --SQKRFADLLLIRGVEKW-------RNTAGLRGFRGVGLK 756
>gi|320013062|gb|ADW07911.1| phage/plasmid primase, P4 family [Streptomyces flavogriseus ATCC
33331]
Length = 515
Score = 374 bits (960), Expect = e-101, Method: Composition-based stats.
Identities = 102/540 (18%), Positives = 200/540 (37%), Gaps = 43/540 (7%)
Query: 254 SKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNK 313
S + S +D + F+ ++ ++ LL +D N
Sbjct: 3 SAESSRFDAAAAAQQMLDFEAAAPAWVPPQQVQAPAM------TDTPVLLPPMLTDRGNA 56
Query: 314 AMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEP 373
+F+ F + + WY D+ + W + A M E +
Sbjct: 57 KLFAQLYSDQFRHV-EGLGWYCWDQ---FRWKRVGGEKAALWA--AGDMAEQMSPTDPRG 110
Query: 374 EDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQD 433
+++ R+ S K+ +A + S+ D+LD + L
Sbjct: 111 VFSDREIA---------QHRRRTMSTSGMKALLHQAKAAPVLSLDPDVLDGDAYSLCTPA 161
Query: 434 GILDLETGQKVKPTK-ELYITKSTGTPFVEGEPSQEFLDLVSGYFE----SEEVMDYFTR 488
G++DL G+ KP +++T + P+ + + F +E++D+
Sbjct: 162 GVVDLRNGRLHKPNPLRDLHSRATNVAP-QATPTPRWHAFLDDTFGADTKGQEMIDFLHL 220
Query: 489 CVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGK 548
+G ++ G AQ + G G +GKS L++++ G+ Y A +M +
Sbjct: 221 LLGYSITGDVGAQVLPFLWGKGANGKSVLLDVMIQVMGD-YADAAPPGFLMDK--GNFAE 277
Query: 549 ANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFI 608
+ L L G RI + SE ND+ + A++K +TGGD + AR + +S +P + ++
Sbjct: 278 HSTELTELHGRRIFVCSELKPNDKFDEARVKLLTGGDKIKARRMRQDYFSFTP-THKLWL 336
Query: 609 VPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAY 666
+ N V A+WRR +IPF++ +A + + A +L + W ++G Y
Sbjct: 337 LGNHQPEVGTGGHAFWRRIRLIPFERVVAADRKIDNLAGELVEEEGPGILHWLIQGAMRY 396
Query: 667 ISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCC-DIGE---NLWEESHSLAKSYSEYR 722
++ + P A D ++ + C G +L E L +Y+ +
Sbjct: 397 LTSRDPLTGPSSVRLATAAYETTEDHIGRFLSEACARQGPETGDLRVEQGLLYATYTAWC 456
Query: 723 EQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDNS 782
E + + R ++Q G+ + K+ + L P D +
Sbjct: 457 SSEG---IRADTARAFAGRIRQ---EVGLASPAEMLKSSGKKYYPAMALLPDDLVRPDGT 510
>gi|71275566|ref|ZP_00651851.1| Phage/plasmid primase P4, C-terminal [Xylella fastidiosa Dixon]
gi|71163457|gb|EAO13174.1| Phage/plasmid primase P4, C-terminal [Xylella fastidiosa Dixon]
Length = 843
Score = 373 bits (958), Expect = e-101, Method: Composition-based stats.
Identities = 96/496 (19%), Positives = 186/496 (37%), Gaps = 50/496 (10%)
Query: 308 SDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNN----VYIWSLTLDKITASIMNFLVSMK 363
+D N + + + +AD W+ + + + L K++ I + +
Sbjct: 367 TDTANAVRIAKHYGKRLMVSAD--RWFVWEGTHWAHGMDAARLLALKLSKIIRGEVEQWR 424
Query: 364 EDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLD 423
D +E N K + + W R VE A A S+ + ++ LD
Sbjct: 425 TKRADTEKEKSKNAKIAAALEAWGKKSEMRSTVE--------AAMALAKSMLVVKAERLD 476
Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFES---- 479
+ L +G +DL TG E YIT+ F + EF+ ++
Sbjct: 477 TDPWLLNCANGTVDLRTGTLKAHRPEDYITRVVPINFDPKATAPEFITTLARITCEYGES 536
Query: 480 -EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538
+ + + R G G + + + G+G +GKSTL++LI G+ + A +
Sbjct: 537 FKPLCAFLQRWFGYCATGSVREHKMAVMYGMGRNGKSTLLDLISGILGSYAGVAAPGLLM 596
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598
+ + L G R++ ++ET+E + +KQ TGGD + AR + +
Sbjct: 597 DGGH----DRHPTEIADLAGRRMMTVNETSEGGILREGFVKQATGGDSLKARHMRSDFFE 652
Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA------------NRDASFAQK 646
P + ++ N ++ D W R ++IPF D +K
Sbjct: 653 FRP-THKLQLLTNHKPVIKGQDVGIWSRLMLIPFKARFGTAEEIEAGIAQYPIDHKITEK 711
Query: 647 LETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGEN 706
L + W + G + GL+ PE+ A ++ + D +I++ C +G
Sbjct: 712 LAAERE-GVLAWVVAGAVEWCKNGLNP--PEIVRNASKDYQTEQDRIAQFIEEECVLGME 768
Query: 707 LWEE-----SHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK--GFIGGIKREKI-EK 758
E+ L +Y+++ + Y +S L++ F + +E +
Sbjct: 769 HEEKLTAPMGGGLYPAYTQWCKDSGVY---PLSKVRFLGELERCVPDFRKKVTKETVGTG 825
Query: 759 EWKSKRIIKGLKLKPA 774
+ + +I+G+ L A
Sbjct: 826 KRRDLVVIQGVGLVDA 841
>gi|153955845|ref|YP_001396610.1| hypothetical protein CKL_3236 [Clostridium kluyveri DSM 555]
gi|219856206|ref|YP_002473328.1| hypothetical protein CKR_2863 [Clostridium kluyveri NBRC 12016]
gi|146348703|gb|EDK35239.1| Phage-related protein [Clostridium kluyveri DSM 555]
gi|219569930|dbj|BAH07914.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 769
Score = 373 bits (957), Expect = e-101, Method: Composition-based stats.
Identities = 93/472 (19%), Positives = 180/472 (38%), Gaps = 35/472 (7%)
Query: 308 SDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVF 367
+D +F+ Y K Y + K W+ + IW+ + + +M S+ +
Sbjct: 317 TDIGASRLFADYYKSFARYVPERKMWFCYENG---IWTPDIGNL--KVMEMCKSLANQLL 371
Query: 368 DLSEEPEDNNKNSKS---PRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDS 424
+ +D ++ R W + YR ++ +A S++ I+ D
Sbjct: 372 TYALTIQDEHQRKAYIDYCRKWQSRRYRETVLK------------DAQSVYPISMAEFDQ 419
Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVM 483
+ L +G L L + E +TK +G + S+ + + EE
Sbjct: 420 DPQVLNCANGTLFLTSMDFHPHNSEDRLTKISGVKYDPEAKSERWDRFIYEIMSGDEEKA 479
Query: 484 DYFTRCVGMALLGGNKAQRFIHIRG-VGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542
+ + G ++ G + + + G +GK TL I G+ Y A I +
Sbjct: 480 KFLQKAFGYSISGDTRYECLFVLYGATTRNGKGTLCESILKVLGS-YGCTARPETISLKK 538
Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602
+ + + RL G R V ISE + +NAA++K MTGGD + AR + N++ SP
Sbjct: 539 NNNSSSPSEDIARLAGVRFVNISEPSRGLVLNAAQVKSMTGGDTINARFLHENSFDFSP- 597
Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLET-KYTLEAKKWF 659
F +I N + + R ++IPF++ + +D + ++ K W
Sbjct: 598 KFKLYINTNYLPVITDMTLFSSGRVVIIPFERHFDESEQDKNLKREFAKPKNQSAILNWL 657
Query: 660 LKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYS 719
++G + +GL +P+ A E ++ +D + +D + N + + Y
Sbjct: 658 IEGYQLLKKEGL--TLPDSVKTATEAYKRDSDKIALFFEDALEESPNSEVRTSEVYARYQ 715
Query: 720 EYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771
+ Y + R L I ++R++ ++ G KL
Sbjct: 716 RWCSANGCYSE---NARNFKQALTA---IARVERKRPRSGGGMTTMLIGYKL 761
>gi|227431773|ref|ZP_03913800.1| DNA-polymerase or DNA-primase [Leuconostoc mesenteroides subsp.
cremoris ATCC 19254]
gi|227352456|gb|EEJ42655.1| DNA-polymerase or DNA-primase [Leuconostoc mesenteroides subsp.
cremoris ATCC 19254]
Length = 791
Score = 373 bits (957), Expect = e-101, Method: Composition-based stats.
Identities = 108/470 (22%), Positives = 190/470 (40%), Gaps = 28/470 (5%)
Query: 308 SDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVF 367
D F Y +FLY T+ D +W ++ MN V ++
Sbjct: 334 DDTGLAERFQYYYGDNFLYDTITRKSMYYDGQ---VWQEDNYRLLEKTMNKTVDRIKEEP 390
Query: 368 DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSR 427
+ + PE+ ++K+P ++ S + E ++ ++T+D D
Sbjct: 391 EFTIAPENMGDSNKTPDELKAAFKKK----SRSHSAKENAIKELRNLITVTTDDFDKELS 446
Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYF 486
L G+L+L +G + E TK T + + + + +L + F +EE++++
Sbjct: 447 VLNTPSGVLELTSGAVKNSSHEDRFTKITNAEYNDKKAPERWLAFLEQTFKGNEELIEFT 506
Query: 487 TRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEA 546
R +G A G + + G G +GKS MN I Y G+ Y IN + + +R +
Sbjct: 507 QRALGYAATGTMDEEVMFILHGNGKNGKSVFMNTIDYVLGD-YSINVDPETVFASRSRNS 565
Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
G + + R+ G+R++++SE E + IK++T D +TAR + N P + T
Sbjct: 566 GGPSGDIARMKGARLMVLSEPEEGKPLAEGLIKKITSKDTITARKLHSNEIEFRP-TGTI 624
Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEAKKWFLKGVK 664
F++ N + DD WRR I IPF + N D KL T+ W +G
Sbjct: 625 FMMTNHKPIINGTDDGIWRRLIFIPFRNQVKTENMDKKLEDKLRTEA-DAILAWIQEGTM 683
Query: 665 AYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQ 724
+ GL+ P V L E R D Q++I++ D + E +A + ++
Sbjct: 684 KWQRDGLNP--PPVVLNETNEYRDEMDDVQSFIEEYFDYSTDERTEFKEIATRFDTWKRL 741
Query: 725 ELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPA 774
++ + + L K F +K K G+ LK
Sbjct: 742 HGV----DMTNKKLGRELGTK-FE--------KKRSHGKVYYYGISLKAE 778
>gi|284048433|ref|YP_003398772.1| phage/plasmid primase, P4 family [Acidaminococcus fermentans DSM
20731]
gi|283952654|gb|ADB47457.1| phage/plasmid primase, P4 family [Acidaminococcus fermentans DSM
20731]
Length = 372
Score = 373 bits (957), Expect = e-101, Method: Composition-based stats.
Identities = 105/391 (26%), Positives = 161/391 (41%), Gaps = 26/391 (6%)
Query: 396 VEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQK--VKPTKELYIT 453
+ + A + ++ LD L + DL G + + IT
Sbjct: 1 MRYRNYRYIVNTQNAAKPMLALDVSELDYDPELLNTPEATYDLTQGTRGSHPHDPDDLIT 60
Query: 454 KSTGT-PFVEGEP-SQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGG 511
K T P +G QE LDL + E++ Y + VGMA +G A++ I G G
Sbjct: 61 KITACSPGDKGMELWQESLDLF--FCHDRELIQYVQQIVGMAAVGRVYAEQMIIAYGGGA 118
Query: 512 SGKSTLMNLIKYAFGNQYV-INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN 570
+GKST N I G I+A+A + R P + L G R++I SE E
Sbjct: 119 NGKSTFWNTIARVLGTYSGKISADALTMSCKR-----NVKPEMAELKGKRLIIASELEEG 173
Query: 571 DEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVI 630
+N +KQ+ D + A Y + + P S T + N V DD WRR IVI
Sbjct: 174 QRLNTGMVKQICSIDPIEAEKKYKDPFHFVP-SHTLVLYTNYLPKVTANDDGTWRRLIVI 232
Query: 631 PFDKPIANR--DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQ 688
PF+ I + +++ L KW ++G + I KG ++ P+ A E+ R+
Sbjct: 233 PFNAKITGKSDIKNYSDYLFEHAGPAILKWVIEGAETAIRKGFKIEEPKAVRNAVEKYRE 292
Query: 689 GTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFI 748
D +++D C+I + E S L + Y Q Y R ST NL++ GF
Sbjct: 293 DNDWLGQFLEDHCEIDPSFTERSGKLYQHYRVICLQSGEYIR---STTDFYGNLEKAGFF 349
Query: 749 GGIKREKIEKEWKSKRIIKGLKLKPAFESVD 779
R+ ++GLKLK + +D
Sbjct: 350 RHRTRD--------GSFVRGLKLKEGQDFLD 372
>gi|300933382|ref|ZP_07148638.1| phage-associated protein [Corynebacterium resistens DSM 45100]
Length = 755
Score = 373 bits (957), Expect = e-101, Method: Composition-based stats.
Identities = 107/563 (19%), Positives = 196/563 (34%), Gaps = 49/563 (8%)
Query: 243 SSKGKEIARRWSKQ-GSTYDEENFNYKWDTFDFEEIGDTAKK---RSTFTSLFYHHGKLI 298
S + +++ R + + E W + T + +
Sbjct: 215 SDEARDLFDRKAARCNPPLPEAEVESIWRS--ATRFAKTVENQPGYVPPEDFEASLDSVR 272
Query: 299 PKG----LLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITAS 354
P A + AY + +Y WY+ + ++ A
Sbjct: 273 PADYSDVGQAHALAKAYPDTLRYSEATDWLVYY--DGVWYESAPAAQAVAQELTERQLAE 330
Query: 355 IMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR-------------QNVEENSK 401
L K+ + + + + FN R+ ++
Sbjct: 331 AHKLLEDAKDQLAATGAAVLLASMSKAKAQAMFNAAQRKAFAAFEDAKTYAAYALKRRES 390
Query: 402 AKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQ--KVKPTKELYITKSTG-T 458
T EA + T + LD+ L G DL G + +TK T
Sbjct: 391 RGITNCLKEARPMLLTTPEQLDADPYLLNTPSGTYDLRHGAASRRDHDPADLVTKQTSLD 450
Query: 459 PFVEGEPSQEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTL 517
P +G + + + +F+ E++ Y R VG+A +G + + G G +GKST
Sbjct: 451 PGTDGA--HLWQEALEVFFQGDAELISYVQRIVGLAAIGQVFVEALVIAYGDGRNGKSTF 508
Query: 518 MNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK 577
N I G Y N A + P L G R++I +E+ E ++ +
Sbjct: 509 WNTIARVLGT-YAGNMSADVLTIGGMR---NVKPELAEAKGKRLIISAESEEGVRMSTSV 564
Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637
+KQ+ D + A Y ++ +P S T + N V D WRR IVIPF+ I
Sbjct: 565 VKQLASTDQIYAEKKYKAPFAFTP-SHTLILYTNHLPRVGAMDAGIWRRLIVIPFEAKIE 623
Query: 638 --NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQA 695
+ ++A L T+ W ++G + ++ + P ++A R+ + +
Sbjct: 624 GTSDIKNYADYLYTQAGGAILAWIMEGARLIHAENYHLKAPARVVEASAAYREENNWFAQ 683
Query: 696 WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755
++D CD+ L E + L ++Y + + R + ++ GF
Sbjct: 684 FLDANCDLDPGLSERAGDLYQAYRAWAMSTSGWARPMV---DFNATVEHHGF-------- 732
Query: 756 IEKEWKSKRIIKGLKLKPAFESV 778
+ K+ KS + GL+LK F+
Sbjct: 733 VRKKMKSGIRVFGLQLKNEFDQQ 755
>gi|182681722|ref|YP_001829882.1| P4 family phage/plasmid primase [Xylella fastidiosa M23]
gi|182631832|gb|ACB92608.1| phage/plasmid primase, P4 family [Xylella fastidiosa M23]
Length = 843
Score = 372 bits (956), Expect = e-101, Method: Composition-based stats.
Identities = 95/496 (19%), Positives = 182/496 (36%), Gaps = 50/496 (10%)
Query: 308 SDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNN----VYIWSLTLDKITASIMNFLVSMK 363
+D N + + + +A+ W+ + + + L K++ I + +
Sbjct: 367 TDTANAVRIAKHYGKRLMVSAE--RWFVWEGTHWAHGMDAARLLALKLSKIIRGEVEQWR 424
Query: 364 EDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLD 423
D +E N K + + W R VE A A S+ + ++ LD
Sbjct: 425 TKRADTEKEKSKNAKIAAALEAWGKKSEMRSTVE--------AAMALAKSMLVVKAERLD 476
Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFES---- 479
+ L +G +DL TG E YIT+ + + F ++
Sbjct: 477 TDPWLLNCANGTVDLRTGTLKAHRPEDYITRVVPVNYTPDAAAPVFKKTLARITCEEGQA 536
Query: 480 -EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538
+ + D+ R G G + + + G+G +GKSTL++LI G+ + A +
Sbjct: 537 QQPLSDFLQRWFGYCATGSVREHKMAVMYGMGRNGKSTLLDLISGILGSYAGVAAPGLLM 596
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598
+ + L G R++ ++ET+E + +KQ TGGD + AR + +
Sbjct: 597 DGGH----DRHPTEIADLAGRRMMTVNETSEGGILREGFVKQATGGDSLKARHMRSDFFE 652
Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA------------NRDASFAQK 646
P + ++ N ++ D W R ++IPF D +K
Sbjct: 653 FQP-THKLQLLTNHKPVIKGQDVGIWSRLMLIPFKARFGTAEEIEAGAAQYPIDHKITEK 711
Query: 647 LETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGEN 706
L + W + G + GL+ PE+ A ++ + D +I++ C +G
Sbjct: 712 LAAERE-GVLAWLVAGAVEWCKNGLNP--PEIVRDASKDYQTEQDRIAQFIEEECVLGME 768
Query: 707 LWEE-----SHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK--GFIGGIKREKIEKE 759
E+ L +Y+++ + Y +S L++ F E E
Sbjct: 769 HEEKLTAPMGGGLYPAYTQWCKDSGVY---PLSKTRFLGELERCVPKFRKKHIYETPEGG 825
Query: 760 WKSKRI-IKGLKLKPA 774
+ + I+G+ L A
Sbjct: 826 KRRMFLAIQGIALADA 841
>gi|71902152|ref|ZP_00684176.1| Phage/plasmid primase P4, C-terminal [Xylella fastidiosa Ann-1]
gi|71728086|gb|EAO30289.1| Phage/plasmid primase P4, C-terminal [Xylella fastidiosa Ann-1]
Length = 848
Score = 372 bits (956), Expect = e-100, Method: Composition-based stats.
Identities = 103/521 (19%), Positives = 190/521 (36%), Gaps = 58/521 (11%)
Query: 286 TFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWS 345
+ ++ +++P+ L +DA N + + W N W
Sbjct: 350 SPPAMPAVKKRVVPEAL--HLVTDAANAGRIAKRHGKQLM--WTGNRWLVW---NDRYWE 402
Query: 346 LTL-------DKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEE 398
+ A I + D + N K + + W +E
Sbjct: 403 SDPVGAHALMADLPALIRAEAEQWRLKATDTEDGKAKNEKIAAALDAWSKKSEMGSAIET 462
Query: 399 NSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGT 458
+ + + LD++ L +G +DL TG E YIT+
Sbjct: 463 LERLLKKR--------LRVPQEQLDTNPWLLNCANGTVDLRTGTLKAHRPEDYITRVVPL 514
Query: 459 PFVEGEPSQEFLDLVSGYFE-----SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSG 513
F + EF+ ++ + + + R G G + Q+F + G G +G
Sbjct: 515 NFDPKATAPEFITTLARITCEEGQAGKPLCAFLQRWFGYCATGEVREQKFAVLYGDGNNG 574
Query: 514 KSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI 573
KSTL++LI G + A +N P + ++ L G R+V E+ E + +
Sbjct: 575 KSTLLDLITGILGRYSGVAAPGLLTGKNGP----QHPNAIADLAGRRMVTTHESGEGEVL 630
Query: 574 NAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFD 633
+KQ TGGD + AR YG + P + ++ N ++ D WRR ++IPF
Sbjct: 631 REDFVKQATGGDTLKARYLYGEFFEFKP-THKLQLLTNHKPAIKGQDSGIWRRIMLIPFK 689
Query: 634 KPIA------------NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLK 681
RD A+KL + W + G + GL P++ L
Sbjct: 690 AKFDAAEGEEIGNGKYPRDMRIAEKLAAERE-GVLAWIVAGAVEWYKNGLRP--PDIVLA 746
Query: 682 AKEEERQGTDTYQAWIDDCCDIGENLWEE-----SHSLAKSYSEYREQELNYDRKRISTR 736
A E+ ++ D +ID+ C++G E+ L +Y+++ + +S
Sbjct: 747 ASEDYKEEQDRVGQFIDEECELGVEKEEKLSTPMGGGLYPAYTQWCKASGVC---ALSKV 803
Query: 737 TVTLNLKQK--GFIGGIKREKIEKEWKSK-RIIKGLKLKPA 774
L+++ GF + +E + + + +I+G+ L A
Sbjct: 804 RFLGGLERRVPGFKKKVTKETVGAGKRREFVVIQGVALVDA 844
>gi|28199007|ref|NP_779321.1| hypothetical protein PD1115 [Xylella fastidiosa Temecula1]
gi|28057105|gb|AAO28970.1| phage-related protein [Xylella fastidiosa Temecula1]
Length = 819
Score = 372 bits (955), Expect = e-100, Method: Composition-based stats.
Identities = 95/496 (19%), Positives = 182/496 (36%), Gaps = 50/496 (10%)
Query: 308 SDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNN----VYIWSLTLDKITASIMNFLVSMK 363
+D N + + + +A+ W+ + + + L K++ I + +
Sbjct: 343 TDTANAVRIAKHYGKRLMVSAE--RWFVWEGTHWAHGMDAARLLALKLSKIIRGEVEQWR 400
Query: 364 EDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLD 423
D +E N K + + W R VE A A S+ + ++ LD
Sbjct: 401 TKRADTEKEKSKNAKIAAALEAWGKKSEMRSTVE--------AAMALAKSMLVVKAERLD 452
Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFES---- 479
+ L +G +DL TG E YIT+ + + F ++
Sbjct: 453 TDPWLLNCANGTVDLRTGTLKAHRPEDYITRVVPVNYTPDAAAPVFKKTLARITCEEGQA 512
Query: 480 -EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538
+ + D+ R G G + + + G+G +GKSTL++LI G+ + A +
Sbjct: 513 QQPLSDFLQRWFGYCATGSVREHKMAVMYGMGRNGKSTLLDLISGILGSYAGVAAPGLLM 572
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598
+ + L G R++ ++ET+E + +KQ TGGD + AR + +
Sbjct: 573 DGGH----DRHPTEIADLAGRRMMTVNETSEGGILREGFVKQATGGDSLKARHMRSDFFE 628
Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA------------NRDASFAQK 646
P + ++ N ++ D W R ++IPF D +K
Sbjct: 629 FQP-THKLQLLTNHKPVIKGQDVGIWSRLMLIPFKARFGTAEEIEAGAAQYPIDHKITEK 687
Query: 647 LETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGEN 706
L + W + G + GL+ PE+ A ++ + D +I++ C +G
Sbjct: 688 LAAERE-GVLAWLVAGAVEWCKNGLNP--PEIVRDASKDYQTEQDRIAQFIEEECVLGME 744
Query: 707 LWEE-----SHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK--GFIGGIKREKIEKE 759
E+ L +Y+++ + Y +S L++ F E E
Sbjct: 745 HEEKLTAPMGGGLYPAYTQWCKDSGVY---PLSKTRFLGELERCVPKFRKKHIYETPEGG 801
Query: 760 WKSKRI-IKGLKLKPA 774
+ + I+G+ L A
Sbjct: 802 KRRMFLAIQGIALADA 817
>gi|15837307|ref|NP_297995.1| hypothetical protein XF0705 [Xylella fastidiosa 9a5c]
gi|9105589|gb|AAF83515.1|AE003913_11 phage-related protein [Xylella fastidiosa 9a5c]
Length = 845
Score = 372 bits (955), Expect = e-100, Method: Composition-based stats.
Identities = 96/499 (19%), Positives = 184/499 (36%), Gaps = 56/499 (11%)
Query: 308 SDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLD-------KITASIMNFLV 360
+D N + + + +A+ W+ + + W+ D K++ I +
Sbjct: 369 TDKANAVRIAKHYGKRIMVSAE--RWFVWEGTH---WAHDTDAARLLTLKLSKIIRGEVE 423
Query: 361 SMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSD 420
+ D +E N K + + W R VE A A S+ + ++
Sbjct: 424 QWRTKRADTEKEKSKNAKIAAALEAWGKKSEMRSTVE--------AAMALAKSMLVVKAE 475
Query: 421 LLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFES- 479
LD+ L +G +DL TG E Y+T+ + + F ++
Sbjct: 476 RLDTDPWLLNCANGTVDLRTGTLKAHRPEDYMTRVVPVNYTPDAAAPVFRKTLARITCEE 535
Query: 480 ----EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535
+ + D+ R G G + + + G+G +GKSTL++LI G + A
Sbjct: 536 GQAQQPLSDFLQRWFGYCATGSVREHKLAVMYGMGRNGKSTLLDLISGVLGRYAGVAAPG 595
Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595
+ + + L+G R+V ++ET+E + +KQ TGGD + AR +
Sbjct: 596 LLMDAGH----DRHPTEIADLVGRRMVTVNETSEGGILREGFVKQATGGDMLKARYMRAD 651
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA------------NRDASF 643
+ P + ++ N ++ D W R ++IPF+ D
Sbjct: 652 FFDF-PPTHKLQLLTNHKPVIKGQDVGIWSRLMLIPFEARFGTAEEVKAGVAQYPIDHKI 710
Query: 644 AQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDI 703
+KL + W + G + +GL P + A ++ + D +I D C +
Sbjct: 711 TEKLAAERE-GVLAWLVAGAVEWYREGL--TPPAIVRDASKDYQTEQDRIAQFIKDECVL 767
Query: 704 GENLWEE-----SHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK--GFIGGIKREKI 756
G E+ L +Y+++ + Y +S LK+ F +E +
Sbjct: 768 GMEHEEKLTAPMGGGLYPAYTQWCKDSGVY---ALSKTRFLDELKRCVPKFRKRDAQETV 824
Query: 757 EKEWKSKRI-IKGLKLKPA 774
+ + + I+G+ L A
Sbjct: 825 AGGKRRRVLSIQGIALTDA 843
>gi|27383368|ref|NP_774897.1| hypothetical protein bll8257 [Bradyrhizobium japonicum USDA 110]
gi|27356543|dbj|BAC53522.1| bll8257 [Bradyrhizobium japonicum USDA 110]
Length = 475
Score = 371 bits (953), Expect = e-100, Method: Composition-based stats.
Identities = 100/468 (21%), Positives = 174/468 (37%), Gaps = 40/468 (8%)
Query: 313 KAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEE 372
+F+ + + T AW++ D W + + M D+
Sbjct: 43 AYIFASTYRDTLRFCHSTGAWFEWDG---SYWR---RNEVGLAAHHVRVMARDMS----- 91
Query: 373 PEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQ 432
SP+ + + S A F++T + D LG
Sbjct: 92 ------QGLSPKAL-------ATIRKRSFASGVEGFARNDPTFAVTIEAWDRDPFLLGTP 138
Query: 433 DGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESE-EVMDYFTRCVG 491
DG +DL TG+ ITK T T +L + + E++ + + G
Sbjct: 139 DGTVDLRTGKMRAADPADGITKLTSTAPSAQADCPLWLRFLQDATGGDGEMIRFLQQWCG 198
Query: 492 MALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANP 551
L G + + + G GG+GKS +N Y + Y A + +R + +
Sbjct: 199 YCLTGDTREHALVFVHGDGGNGKSVFLNTTSYIL-HDYATTASMDTFVASR---SDRHPT 254
Query: 552 SLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPN 611
L L G+R+V SET E ++IKQMTGGD ++AR + ++ P F F+V N
Sbjct: 255 DLAMLRGARLVSASETEEGRAWAESRIKQMTGGDAISARFMRQDFFTFQP-QFKLFVVGN 313
Query: 612 KHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGL 671
+ + D A RR+ ++PF + D KL + +W + G + + GL
Sbjct: 314 HQPALHSVDAAARRRFNIVPFTRKPTKPDRELEAKLRGEA-PAILRWMVDGCRDWQRNGL 372
Query: 672 DVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRK 731
P ++A E DT+ W+ D C + + S +A + + + +
Sbjct: 373 VR--PASIVEATETYFAEQDTFGQWLKDACRVEPDNRSISDFVADLFKSWTDYAEASGER 430
Query: 732 RISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVD 779
S + +L + GF G + + ++ GL+L E
Sbjct: 431 PGSQKGFVQSLTKSGFKKGQR-------VRGGQLYIGLQLLRQAEKEP 471
>gi|24575081|gb|AAL06652.1| putative primase [Streptomyces globisporus]
Length = 509
Score = 371 bits (952), Expect = e-100, Method: Composition-based stats.
Identities = 98/532 (18%), Positives = 196/532 (36%), Gaps = 38/532 (7%)
Query: 254 SKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNK 313
S +G +D + + G + + +D N
Sbjct: 4 SAEGPRFDATAAAQQMLALETTPAPAPL-LPVQAAPEAPVAATAWEAGEIPASLTDRGNA 62
Query: 314 AMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEP 373
+F + F + + WY D Y W + A M E++ P
Sbjct: 63 KLFVRLYRDQFRHV-EGLGWYSWDG---YRWKRAGGEKAALWA--AGEMAEEM------P 110
Query: 374 EDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQD 433
+ + + R + ++ + K+ +A S+ D LD L D
Sbjct: 111 GSDPRGLFTDREL---HHHKRRTLSTTGMKALLTQAKASPDLSLDPDTLDGDPYALCTPD 167
Query: 434 GILDLETGQKVKPTK--ELYITKSTGTPFVEGEPSQEFLDLVSGYFESE----EVMDYFT 487
G++DL G+ KP + + ++ +P + P+ + + F S+ E++D+
Sbjct: 168 GVVDLRNGRMRKPDPTRDFHSRATSASP--QDIPTPRWHRFLEDTFGSDAEGREMIDFLH 225
Query: 488 RCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAG 547
+G ++ G AQ + G G +GKS L++++ G+ Y A +M
Sbjct: 226 LLLGYSITGDVGAQVLPFLHGQGKNGKSVLLDVMIQILGD-YADAAPPGFLMDR--GAYS 282
Query: 548 KANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPF 607
+ + L L G R+++ SE ND + A+++ +TGGD + AR + +S +P + +
Sbjct: 283 EHSTELTELHGRRLIVCSELKPNDRFDEARVRLLTGGDKIKARRMRQDYFSFTP-THKLW 341
Query: 608 IVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDASFAQKLETKYTLEAKKWFLKGVKA 665
++ N V A+WRR ++PF++ + + + + A +L W +G +
Sbjct: 342 LLGNHRPEVSTGGFAFWRRIRLLPFERIVPDERKIDNLAVELVQDEGPGILHWLTEGARR 401
Query: 666 YISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE---NLWEESHSLAKSYSEYR 722
Y++ + P+ A D ++ +CC L E L SYS +
Sbjct: 402 YLATRDTLAGPDRVRIATSAYANTEDHIGRFLAECCLHDPENSELRVEQGLLYTSYSTWC 461
Query: 723 EQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPA 774
+ + + R ++Q G+ + ++ L L
Sbjct: 462 AH--SEGIRPGTARAFATRVRQ---EVGLASPADMIKSNGRKFYPNLALAAD 508
>gi|53803176|ref|YP_115052.1| hypothetical protein MCA2648 [Methylococcus capsulatus str. Bath]
gi|53756937|gb|AAU91228.1| prophage LambdaMc01, DNA primase, P4 family [Methylococcus
capsulatus str. Bath]
Length = 755
Score = 371 bits (952), Expect = e-100, Method: Composition-based stats.
Identities = 108/517 (20%), Positives = 185/517 (35%), Gaps = 47/517 (9%)
Query: 262 EENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRF-SDAYNKAMFSIYK 320
++ + WD D G F + S + +D F+
Sbjct: 271 PDDRSEGWDAADAVAEGFDVAGFLAFGPRMSIKPASVTPTQEPSVWATDDALALAFTSRY 330
Query: 321 KGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNS 380
+ Y A W D W + + + + + D+++ +
Sbjct: 331 AEDWRYCAAWGKWLVWDGRR---WQADETLL-------VHHLIRAICREAALKADSHRLA 380
Query: 381 KSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLET 440
+ +S + + TS+ D+ L GI+DL+T
Sbjct: 381 A-------------KLAASSTVGGVERLARTDRRHASTSEEWDADLFALNTPSGIVDLKT 427
Query: 441 GQKVKPTKELYITK-STGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNK 499
G+ + +TK +T TP + + FL+ ++G + Y R VG L G
Sbjct: 428 GRIKPHDRRERMTKLATATPHGDCARWRAFLEDITG--GDTALQAYLQRMVGYCLTGATS 485
Query: 500 AQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGS 559
A + G G +GKS +N + G+ Y +A M+ R + L L G+
Sbjct: 486 AHALFFLYGTGANGKSVFVNTLATILGD-YATSAPMDTFMEAR---GDRHPTDLAGLRGA 541
Query: 560 RIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNP 619
R V ET + N +K+K +TGGD ++AR + + P F I N +RN
Sbjct: 542 RFVSSIETEQGRRWNESKVKAITGGDKVSARFMRQDFFEYLP-QFKLVIAGNHKPAIRNV 600
Query: 620 DDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPE 677
D+A RR +IPF I RD +KL + W ++G A+ GL+ P
Sbjct: 601 DEAMKRRLHLIPFTVTIPPEKRDGQLTEKLLAER-DGILAWAVEGCLAWQRDGLNP--PA 657
Query: 678 VCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRT 737
+ A EE D ++D+ E + + + E+ + Y ++R
Sbjct: 658 SVVSATEEYFDEEDAIGDFLDEEAQRFEQARVAVADVFQRWQEWATRRGEYVG---TSRW 714
Query: 738 VTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPA 774
+ L +GF + + + GL LKP
Sbjct: 715 LAQQLANRGF-------GRARLHGGVKGLAGLSLKPR 744
>gi|254560380|ref|YP_003067475.1| P4 family phage/plasmid primase [Methylobacterium extorquens DM4]
gi|254267658|emb|CAX23504.1| putative P4 family phage/plasmid primase [Methylobacterium
extorquens DM4]
Length = 743
Score = 371 bits (952), Expect = e-100, Method: Composition-based stats.
Identities = 146/786 (18%), Positives = 265/786 (33%), Gaps = 103/786 (13%)
Query: 12 QAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKID---KLPAC-GFGFVCGVGEQPLYA 67
I G+ + L+ K P +L W L E I+ P G G +
Sbjct: 35 TYIECGYDITVLKPRTKEP-KLKNWTGITLEIEDIEAHGTFPEHYNIGIKLGSASDGIVD 93
Query: 68 FDIDSKDEKTANTFKDTFEILHGTPIVRIGQ--KPKILIPFRMNKEGIKKK-KTTESTQG 124
D+D + L T G+ P +R+ K K S +
Sbjct: 94 VDLD------CDAAVSLGAKLLNTETRVFGRDDNPASHYMYRVFDPHSTVKFKHPISRKM 147
Query: 125 HLDILGCGQYFVAYNIHPKTK-----KEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQE 179
+++ G G V K ++Y+ P ++ L + + F +
Sbjct: 148 IVELRGNGSQTVLPGSIYKDGTDIRFEDYSLPEP---LNIDWETLKRQCGLIAAGTVFSQ 204
Query: 180 ITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHE 239
+ + ++ + Q T ++ ++ + + + I A + +
Sbjct: 205 FWIEGSRHLLALALGGWAAHKQIDQKTFTQLIEAVAVYASDDDVADRIDCIR---ASYAK 261
Query: 240 TRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIP 299
K D + + ++ + +
Sbjct: 262 FEAGG----------KTAWKDDLNECIADGRIMNAVADWLMVGREPEQEAVLKQSKRPLS 311
Query: 300 KGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFL 359
SD + F Y ++ D + +Y + N +TL + ++M+++
Sbjct: 312 A------TSDLQSGKDFCAYVGDSLIFCDDQEQFYH--RQNDVYEPVTLAHVKETVMDYV 363
Query: 360 VSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITS 419
S+ D R N EE K K+ +I ++
Sbjct: 364 GSL---------------------------DVDRTNFEEMRKLKAAQSVGRINAIVDVSR 396
Query: 420 D-------LLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDL 472
D+ G ++G+LDL TG+ V+ + +T+ GT + FL
Sbjct: 397 SILRISSSKFDTDPFLAGCKNGVLDLRTGELVE--PDCIVTRRLGTNYDSDAWCHLFLTF 454
Query: 473 VSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVI 531
+ FE +E + + R VG L G Q + G G +GKST + +I+ G +Y
Sbjct: 455 MHQVFEGDQEKIAFVRRAVGYTLTGSTAGQCMFLVIGTGANGKSTFLKVIQALMG-EYGG 513
Query: 532 NAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARL 591
+ + +M ++ + L G R V SE ++ AK+K MTGGD + R
Sbjct: 514 SIPSHSMMASKF--GNDKTDDIASLDGRRFVSASEGEMGQKLAVAKVKLMTGGDTIACRP 571
Query: 592 NYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLET 649
YG + P F + N + D+A WRR VI F A RD +L+
Sbjct: 572 LYGKYFDMKP-EFKIWFGTNDLPVIAGGDEAIWRRLYVIDFPVSFTEAQRDGGLFDRLKL 630
Query: 650 KYTLEAKKWFLKGVKAYISKGLD---VDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGEN 706
+ W L+GV+ G+ ++ P R +DT ++I+ CD E
Sbjct: 631 EL-PGILNWALQGVREL--GGMKSNFLNPPASVRNETNRYRSDSDTVASFIEAGCDRVEG 687
Query: 707 LWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRII 766
+ L ++Y+ + + +S+ L + GF K+E +
Sbjct: 688 AVVMMNVLHETYTRWCN---TSGVEPLSSGLFGKELNRLGFQVKRKKEGNGR-------- 736
Query: 767 KGLKLK 772
G+KLK
Sbjct: 737 LGIKLK 742
>gi|256847830|ref|ZP_05553275.1| phage DNA polymerase [Lactobacillus coleohominis 101-4-CHN]
gi|256715519|gb|EEU30495.1| phage DNA polymerase [Lactobacillus coleohominis 101-4-CHN]
Length = 751
Score = 370 bits (951), Expect = e-100, Method: Composition-based stats.
Identities = 109/553 (19%), Positives = 199/553 (35%), Gaps = 54/553 (9%)
Query: 251 RRWSKQGSTYDE----ENFNYKWDTFDFEEIGDTAKKRST-FTSLFYHHGKLIPKGLLAS 305
+ + ++ + D + W + + G + Y+ L
Sbjct: 214 QAFQEEAAKCDPPLSKQELKNIWHS--ATKFGQRMASQKGYIPPEEYNQ---PNDDLQPD 268
Query: 306 RFSDAYNKAMFSIYKKGHFLYT-------ADTKAWYKKDKNNVYIWSLTLDKITASIMNF 358
+SD +F K YT D K W + + + DK
Sbjct: 269 DYSDTGESYVFVNNCKERVCYTNQSGFMWFDGKVWQESEPLALGEVQRFTDKQLTDAQLR 328
Query: 359 LVSMKEDV-------------FDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKST 405
+ + + + + ++ + + + Y ++E S
Sbjct: 329 VTNSYKKIQQNGVTSALQAMGKTKASRTFNDEQLAAFKDYENAKAYEAFILKERSTRGIN 388
Query: 406 AQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTG-TPFVE 462
+ + D+ L +G +L+ G + + ITKST P +
Sbjct: 389 GILTNSRPKLVKEINDFDADPFLLNTPNGPFNLKKGMHGQQEIQADELITKSTSCVPGNQ 448
Query: 463 GEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLI 521
G + + ++ +F + +++Y VG+ +G + I G G +GKST N I
Sbjct: 449 GA--SLWQEALTTFFCGDQALINYVQEIVGLVAIGQVYLEALIIAYGSGRNGKSTFWNTI 506
Query: 522 KYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM 581
G Y + A + P + + G R++I +E E +N + +KQ+
Sbjct: 507 ANVLGT-YTGHLSADALTTGVRR---NVKPEMAEVKGKRLIISAELEEGKRLNTSIVKQL 562
Query: 582 TGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD- 640
D + A Y +S +P S T + N V D+ WRR IVIPF IA R+
Sbjct: 563 CSTDEIYAEKKYMKPFSFTP-SHTIVLYTNYLPHVGGNDEGIWRRLIVIPFKATIAKRND 621
Query: 641 -ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD 699
++AQ L + +W ++G + I + + P KA D ++++
Sbjct: 622 IKNYAQYLTEQAGPAVLQWIIEGAQRIIQQNYQLTTPVAVTKAVRSYHANNDWLGHFLNE 681
Query: 700 CCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKE 759
C++ + ++S L + Y EY + Y R ST LK GF +
Sbjct: 682 NCELDPSYEQKSGDLYQKYREYCQSIGEYIR---STSDFYTALKNAGFQ--------RQH 730
Query: 760 WKSKRIIKGLKLK 772
++ R IKGL+LK
Sbjct: 731 KQNGRFIKGLRLK 743
>gi|23015921|ref|ZP_00055685.1| COG3378: Predicted ATPase [Magnetospirillum magnetotacticum MS-1]
Length = 796
Score = 370 bits (951), Expect = e-100, Method: Composition-based stats.
Identities = 100/473 (21%), Positives = 177/473 (37%), Gaps = 41/473 (8%)
Query: 307 FSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDV 366
F++ A F+ + + A W S L
Sbjct: 361 FTEDALAAAFTQAHAEDWRFVAGWGQWLLWTGCRWERESTLL-----------------A 403
Query: 367 FDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSS 426
+D++ + ++ R + S + + A + T+++ D
Sbjct: 404 YDMARLICRDAASAARSAKL------RSKLSSASTVAAVERLARADRSHAATTEVWDRDP 457
Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKST-GTPFVEGEPSQEFLDLVSGYFESEEVMDY 485
L G++DL +GQ + L +TK T TP + ++F+ V+G +++ DY
Sbjct: 458 WLLNTPGGVVDLHSGQIQPHNRALAMTKITMATPQGDCPIWRQFVATVTG--GDKDLQDY 515
Query: 486 FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545
R G L G + G G +GKS N + G+ Y A M
Sbjct: 516 LQRVAGYCLTGVTSEHALFFLYGTGANGKSVFANTLTAILGD-YATVAAMDMFMA---TT 571
Query: 546 AGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFT 605
+ + + L G+RIV ET + +K+K +TGGD +TAR + + P F
Sbjct: 572 SERHPTDMAGLRGARIVTSIETEQGRRWAESKLKALTGGDKITARFMRQDFFEFIP-QFK 630
Query: 606 PFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGV 663
+ N +RN D+A RR ++PF I RD + +L + W ++G
Sbjct: 631 LLVAGNHKPAIRNVDEAMRRRLHMVPFTITIPPAKRDKQLSDRLLAER-DGILAWAVEGC 689
Query: 664 KAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYRE 723
A+ GL P + A +E + D + W+D+ C+ G + E + +L + + E
Sbjct: 690 LAWQRTGLRP--PAAVMAATDEYFESEDAFGRWLDERCERGNSFSETTSALFGDWKNWTE 747
Query: 724 QELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFE 776
+ S + NL +G R K + ++ R+ +G E
Sbjct: 748 ANGEFTG---SIKRFAENLVNRGLEQ--WRSKTARHFRGVRLCEGADASDGME 795
>gi|167006280|ref|YP_001661503.1| hypothetical protein pSHK1.14 [Streptomyces sp. HK1]
gi|115394141|gb|ABI97026.1| unknown [Streptomyces sp. HK1]
gi|166162362|gb|ABY83483.1| hypothetical protein pSHK1.14 [Streptomyces sp. HK1]
Length = 517
Score = 370 bits (951), Expect = e-100, Method: Composition-based stats.
Identities = 104/502 (20%), Positives = 192/502 (38%), Gaps = 43/502 (8%)
Query: 295 GKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITAS 354
G+ LL +D N +F+ F + + WY D+ Y W + A
Sbjct: 40 GQATAPALLPPMLTDRGNAKLFAQLYSDQFRHV-EGLGWYCWDQ---YRWKRVGGEKAAL 95
Query: 355 IMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNT---DYRRQNVEENSKAKSTAQSLEA 411
M E + ++ PR F+ R+ S K+ +A
Sbjct: 96 WA--AGDMAEQM------------SATDPRGVFSEREIAQHRRRSMSTSGMKALLHQAKA 141
Query: 412 GSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTK-ELYITKSTGTPFVEGEPSQEFL 470
S+ D+LD + L G++DL G+ KP +++T + P+ +
Sbjct: 142 APALSLDPDVLDGDAYSLCTPAGVVDLRNGRLHKPDPLRDLHSRATNVAP-QAMPTPRWH 200
Query: 471 DLVSGYFESE----EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFG 526
+ F + E+ D+ +G ++ G AQ + G G +GKS L++++ G
Sbjct: 201 AFLDDTFGDDAKGREMTDFLHLLLGYSITGDVGAQVLPFLWGKGANGKSVLLDVMIQVMG 260
Query: 527 NQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDC 586
+ Y A +M + + L L G RI + SE ND+ + A++K +TGGD
Sbjct: 261 D-YADAAPPGFLMDK--GNFAEHSTELTELHGRRIFVCSELKPNDKFDEARVKLLTGGDK 317
Query: 587 MTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFA 644
+ AR + +S +P + +++ N V A+WRR +IPF++ + + + A
Sbjct: 318 IKARRMRQDYFSFTP-THKLWLLGNHQPEVGTGGHAFWRRIRLIPFERVVVADRKIDNLA 376
Query: 645 QKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCC-DI 703
+L + W ++G Y++ + P A D ++++CC
Sbjct: 377 GELVQEEGPGILHWLIEGAIRYLTSRDPLAGPSSVRLATAAYETTEDHIGRFLNECCVRQ 436
Query: 704 GE---NLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEW 760
G +L E L +Y+ + E + + R ++Q G+ +
Sbjct: 437 GPDTGDLRVEQGLLYGTYTGWCSSEG---IRADTARAFASRIRQ---EIGLASPAEMLKS 490
Query: 761 KSKRIIKGLKLKPAFESVDDNS 782
K+ L L P + D
Sbjct: 491 SGKKYYPSLALLPDDIARADEP 512
>gi|307580158|gb|ADN64127.1| P4 family phage/plasmid primase [Xylella fastidiosa subsp.
fastidiosa GB514]
Length = 842
Score = 370 bits (951), Expect = e-100, Method: Composition-based stats.
Identities = 92/495 (18%), Positives = 182/495 (36%), Gaps = 49/495 (9%)
Query: 308 SDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNN----VYIWSLTLDKITASIMNFLVSMK 363
+D N + + + +A+ W+ + + + L K++ I + +
Sbjct: 367 TDTANAVRIAKHYGKRLMVSAE--RWFVWEGTHWAHGMDAARLLALKLSKIIRGEVEQWR 424
Query: 364 EDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLD 423
D +E N K + + W R VE A A S+ + ++ LD
Sbjct: 425 TKRADTEKEKSKNAKIAAALEAWGKKSEMRSTVE--------AAMALAKSMLVVKAERLD 476
Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFES---- 479
+ L +G +DL TG E YIT+ + + F ++
Sbjct: 477 TDPWLLNCANGTVDLRTGTLKAHRPEDYITRVVPVNYTPDAAAPVFKKTLARITCEEGQA 536
Query: 480 -EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538
+ + D+ R G G + + + G+G +GKSTL++LI G+ + A +
Sbjct: 537 QQPLSDFLQRWFGYCATGSVREHKLAVMYGMGRNGKSTLLDLISGILGSYAGVAAPGLLM 596
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598
+ + L G R++ ++ET+E + +KQ TGGD + AR + +
Sbjct: 597 DGGH----DRHPTEIADLAGRRMMTVNETSEGGILREGFVKQATGGDSLKARHMRSDFFE 652
Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA------------NRDASFAQK 646
P + ++ N ++ D W R ++IPF D +K
Sbjct: 653 FQP-THKLQLLTNHKPVIKGQDVGIWSRLMLIPFKARFGTAEEIEAGVAQYPIDHKITEK 711
Query: 647 LETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGEN 706
L + W + G + GL+ P + A ++ + D +I + C +G
Sbjct: 712 LAAERE-GVLAWVIAGAVEWYRDGLNP--PGIVRDASKDYQTEQDRIAQFIAEECILGME 768
Query: 707 LWEE-----SHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK--GFIGGIKREKIEKE 759
E+ L +Y+++ + Y +S L++ F + ++ +
Sbjct: 769 HEEKLTAPMGGGLYPAYTQWCKDSGVY---ALSKTRFLGELERCVPKFRNKRETRTLDGK 825
Query: 760 WKSKRIIKGLKLKPA 774
+ +I+G+ L A
Sbjct: 826 RRELVVIQGIGLVDA 840
>gi|239904738|ref|YP_002951476.1| hypothetical protein DMR_00990 [Desulfovibrio magneticus RS-1]
gi|239794601|dbj|BAH73590.1| hypothetical protein [Desulfovibrio magneticus RS-1]
Length = 606
Score = 370 bits (950), Expect = e-100, Method: Composition-based stats.
Identities = 103/476 (21%), Positives = 194/476 (40%), Gaps = 25/476 (5%)
Query: 302 LLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVS 361
+ A +D N F F+Y ++ W D + + L + +M F++
Sbjct: 123 IFAYPLTDLGNAQKFYRVYNKFFMYDHESAQWVGWDNDKKRWLTGRLAR--QLMMRFVMK 180
Query: 362 MKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDL 421
+ ++++ ++ + + +NS+ K+ + + +
Sbjct: 181 LVDELYRQAKSLRPLRTRNGEEVTPEEALAWAKATSQNSRKKAVLEMVRDLPKVRVAKAE 240
Query: 422 LDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESE 480
LDS LG +G+LDL TG ++ EL IT+ + + F + +
Sbjct: 241 LDSDPYLLGVANGVLDLRTGTLIENRPELRITRYASAAYRPDAEAPIFQGFMRQICLGRQ 300
Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540
+++D+ G AL G K F + G G +GKSTL+ + Y G +Y I ++
Sbjct: 301 DLVDFLQEVFGYALSGLIKEHAFFILVGTGANGKSTLVEIFLYLLG-EYGIGMPGHAFLK 359
Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600
+ + + R G R+ I+E N+ + + +K+ GD MTAR +
Sbjct: 360 S---NSRAIRNDIARWPGIRLGTIAEANDGMSFDESLLKRSVAGDVMTARFIGKEYFDFH 416
Query: 601 PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI-ANRDASFAQKLETKYTLEAKKWF 659
P + F+ N + D+ +RR +VIPFD A D +KL+ + W
Sbjct: 417 PVA-KFFLSVNTLPKITGADNGIYRRLVVIPFDGDFQATMDRDLPEKLKAEI-DGILAWA 474
Query: 660 LKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYS 719
++G + ++G + P+ ++A + R DT Q+++D+CC + N+ L ++Y
Sbjct: 475 VQGFLRWQARGH-LVKPDCVVEACKAYRAEMDTVQSFLDECCILDPNVSTPLGVLYEAYK 533
Query: 720 EYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRI-IKGLKLKPA 774
+ + + + + QKGF K+ KS KG+ LK A
Sbjct: 534 NWAKGAV---VDPANLHLFGTLMGQKGF----------KKVKSGTWRWKGVALKAA 576
>gi|294633256|ref|ZP_06711815.1| DNA primase/helicase [Streptomyces sp. e14]
gi|292831037|gb|EFF89387.1| DNA primase/helicase [Streptomyces sp. e14]
Length = 502
Score = 370 bits (949), Expect = e-100, Method: Composition-based stats.
Identities = 96/489 (19%), Positives = 186/489 (38%), Gaps = 44/489 (8%)
Query: 298 IPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMN 357
+P L +D N +F + F + + W+ D Y W + A
Sbjct: 39 MPTAPLPPSLTDRGNARLFVRLHRDQFRHV-EGLGWFVWDG---YRWKRGGGEKAALWA- 93
Query: 358 FLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNT---DYRRQNVEENSKAKSTAQSLEAGSI 414
M ED+ D PR F+ + ++ + K+ +A
Sbjct: 94 -AGEMAEDMPD------------SDPRGVFSEREIAHHKRRTLSTAGMKALLTQAKASPD 140
Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKV--KPTKELYITKSTGTPFVEGEPSQEFLDL 472
S+ D LD L G++DL G PT++ + ++ P + + +
Sbjct: 141 LSVDPDDLDGDPYALCTPAGVVDLHNGHIRKADPTRDFHSRATSVAP--QRMETPRWHRF 198
Query: 473 VSGYFESE----EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528
++ F + E++D+ +G ++ G AQ + G G +GKS L++ + G+
Sbjct: 199 LADTFGDDAEGREMIDFLHLMLGYSITGDVGAQVLPFLHGEGKNGKSVLLDTMIQILGD- 257
Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588
Y A +M + + L L G R+V+ SE ND+ + A+++ +TGGD +
Sbjct: 258 YADAAPPGFLMDR--GAFSEHSTELTELHGRRLVVCSELKPNDKFDEARVRLLTGGDKIK 315
Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQK 646
AR + +S +P +++ N V A+WRR ++PF + + R + A +
Sbjct: 316 ARRMRQDYFSFTPTHH-LWLLGNHRPEVSTGGFAFWRRIRLLPFTRTVPAERRIDNLAFE 374
Query: 647 LETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIG-- 704
L +W ++G + Y++ ++ P+ A D ++ +CC
Sbjct: 375 LVRDEGPGILQWLIEGAQRYLATRDPLEGPDRVRIATSAYASTEDHIGRFLAECCTRDGE 434
Query: 705 --ENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKS 762
+L E L YS + + + R ++Q G+ +
Sbjct: 435 NARDLRVEQGLLYTEYSSWCHA--GEGIRPATPRAFANRVRQ---EVGVASPADMIKSNG 489
Query: 763 KRIIKGLKL 771
++ G+ L
Sbjct: 490 RKYYPGIAL 498
>gi|304389860|ref|ZP_07371819.1| P4 family prophage LambdaSa04 [Mobiluncus curtisii subsp. curtisii
ATCC 35241]
gi|304327036|gb|EFL94275.1| P4 family prophage LambdaSa04 [Mobiluncus curtisii subsp. curtisii
ATCC 35241]
Length = 747
Score = 369 bits (947), Expect = e-99, Method: Composition-based stats.
Identities = 106/565 (18%), Positives = 195/565 (34%), Gaps = 60/565 (10%)
Query: 240 TRGSSKGKEIARR-WSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLI 298
+ + +++ R S + W++ A Y
Sbjct: 213 YGQTDQARDLFDRKASLCEPPLSDSELATIWNS-ACRFATKVAANPDYLPPEAY----AQ 267
Query: 299 PKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNF 358
L F+D + + Y+ T AW + +W K+ +
Sbjct: 268 LTSLKPEDFTDVGQAMVLASEYANRICYSPAT-AWMVYEDG---VWEENEPKVQHVVQEL 323
Query: 359 LVSMKEDVFDLSEEPE------------------------DNNKNSKSPRFWFNTDYRRQ 394
E V E + + ++++
Sbjct: 324 TTRQLEQVDAELEAISQRASELGVTAMLMAMTKTKALGMFNPKQAQAYRELTAAQEWQKF 383
Query: 395 NVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITK 454
+ S A +A + I ++LD+ + L G DL G + +TK
Sbjct: 384 IYKCRSDRTIQAVMRQARPLTLINPEILDADAYLLNTPTGTWDLRDGSRRDHDPADMLTK 443
Query: 455 STGTPFVEGEPSQEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSG 513
T T + +Q + D + F +E++ Y R G+A +G + I G G +G
Sbjct: 444 QTATDPSDI-GAQVWRDSLELTFGGDQELIAYVQRVCGLAAIGKVLIEALIIAYGDGNNG 502
Query: 514 KSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI 573
KST N I G+ Y A ++ + A + R++I E +E +
Sbjct: 503 KSTFWNTIARVLGS-YSETISAEVLIAGKK---NNAKHEMAETRARRLLIAGENDEGVRL 558
Query: 574 NAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFD 633
+ + D + A Y + +S +P S T + N V D WRR +VIPF
Sbjct: 559 STS------STDKIAAEKKYKDPFSFTP-SHTLVLYTNHLPKVGATDTGIWRRLVVIPFT 611
Query: 634 KPIAN--RDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTD 691
+ I ++A L + W ++G + ++ + P ++A E+ R D
Sbjct: 612 QTIQPSVDVKNYADHLFEQAGGAVLAWIMEGARLIHAENYRLVPPACVVEASEKYRAAND 671
Query: 692 TYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGI 751
+ ++D+CC++ L E+S +L SY + Y R ST +++ GF
Sbjct: 672 WFAHFLDECCELDPGLEEKSGALYSSYRAWALSRSEYVR---STSDFYAAVEKNGFTS-- 726
Query: 752 KREKIEKEWKSKRIIKGLKLKPAFE 776
+ ++I+GL+L FE
Sbjct: 727 ------RRNNRGKLIRGLRLLDEFE 745
>gi|260579061|ref|ZP_05846960.1| P4 family prophage LambdaSa04, DNA primase [Corynebacterium
jeikeium ATCC 43734]
gi|258602812|gb|EEW16090.1| P4 family prophage LambdaSa04, DNA primase [Corynebacterium
jeikeium ATCC 43734]
Length = 754
Score = 369 bits (947), Expect = 1e-99, Method: Composition-based stats.
Identities = 106/561 (18%), Positives = 193/561 (34%), Gaps = 49/561 (8%)
Query: 243 SSKGKEIARRWSKQ-GSTYDEENFNYKWDTFDFEEIGDTAKK---RSTFTSLFYHHGKLI 298
+ + +++ R + + E W + T + +
Sbjct: 215 TDEARDLFDRKAARCNPPLPEAEVEAIWRS--ATRFAKTVENQPGYVPPEDFEASLDSVR 272
Query: 299 PKG----LLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITAS 354
P A + AY ++ S +Y WY+ + ++ A
Sbjct: 273 PADYSDVGQAHALAKAYPDSLRSSEATDWLVYY--DGVWYESAPAAQAVAQELTERQLAE 330
Query: 355 IMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFN-------------TDYRRQNVEENSK 401
L K+ + + + + FN Y ++
Sbjct: 331 AHELLEDAKDQLAATGAAMLLASMSKAKAQAMFNAAQQKAFAAFEDAKTYAAYALKRRES 390
Query: 402 AKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQ--KVKPTKELYITKSTG-T 458
T EA + T + LD+ L G DL G + +TK T
Sbjct: 391 RGITNCLKEARPMLLTTPEQLDADPYLLNTPSGTYDLRHGAASRRDHDPADLVTKQTSLD 450
Query: 459 PFVEGEPSQEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTL 517
P +G + + + +F+ E++ Y R VG+A +G + + G G +GKST
Sbjct: 451 PGTDGA--HLWQEALEVFFQGDAELIAYVQRIVGLAAIGQVFVEALVIAYGDGRNGKSTF 508
Query: 518 MNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK 577
N I G Y N A + P L G R++I +E+ E ++ +
Sbjct: 509 WNTIARVLGT-YAGNMSADVLTIGGMR---NVKPELAEAKGKRLIISAESEEGVRMSTSV 564
Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI- 636
+KQ+ D + A Y ++ +P S T + N V D WRR IVIPF+ I
Sbjct: 565 VKQLASTDQIYAEKKYKAPFAFTP-SHTLTLYTNHLPRVGAMDAGIWRRLIVIPFEAKIE 623
Query: 637 -ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQA 695
A+ ++A L T+ W ++G + ++ + P ++A R+ + +
Sbjct: 624 GASDIKNYADYLYTQAGGAILAWIMEGARLIHAEDYHLKAPARVVEASAAYREENNWFAQ 683
Query: 696 WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755
++D CD+ L E + L ++Y + + R + ++ GF
Sbjct: 684 FLDANCDLDPGLSERAGDLYQAYRAWAMSTSGWARPMV---DFNATVEHHGFT------- 733
Query: 756 IEKEWKSKRIIKGLKLKPAFE 776
K + GL LK F+
Sbjct: 734 -RKRTMHGMFVHGLALKNEFD 753
>gi|327309735|ref|YP_004336634.1| P4 family phage/plasmid primase [Pseudonocardia dioxanivorans
CB1190]
gi|326955377|gb|AEA29069.1| phage/plasmid primase, P4 family [Pseudonocardia dioxanivorans
CB1190]
Length = 868
Score = 369 bits (946), Expect = 2e-99, Method: Composition-based stats.
Identities = 97/488 (19%), Positives = 188/488 (38%), Gaps = 25/488 (5%)
Query: 299 PKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNF 358
P F+D N + WY D ++
Sbjct: 9 PPRAAPHTFNDMGNARRLVELCGDDVRHF--RGTWYVWDGKRFA--RDQDYRVQEQAKRV 64
Query: 359 LVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAK--STAQSLEAGSIFS 416
+ M++ + ++ + + + + + ++ + S + +
Sbjct: 65 PLEMRKQAYRAISASKELSHDERKAAETSARELLKFADASGNRLRLASMIELARTEPEIT 124
Query: 417 IT-SDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSG 475
+T +D DS Q+G +DL TG+ + ++ IT+ + + S+ F ++
Sbjct: 125 VTDADAFDSDPWAFNVQNGTIDLRTGELREHSRGDMITRISPATYDPDARSELFDKFLAR 184
Query: 476 YFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535
CVG L G + G G +GK+ L++ + + G+ Y
Sbjct: 185 IQPDPVERRALQLCVGYTLTGFTGEAKLFTANGGGRNGKNVLLDTVAHLLGDYYRKA--P 242
Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595
+ + R + A+P + + G+R+V+ SET D + +++K++TG +TAR YG+
Sbjct: 243 AGFLTARKEDGTSASPDMADMRGARMVMASETERGDRLAESRVKELTGDRTITARFLYGD 302
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLET---- 649
+S P +F +++ N VR D+ W R +IPF + I RD KL
Sbjct: 303 FFSFRP-TFKIWLLTNYRPSVRGTDEGIWSRLALIPFREYITPEERDPHLTDKLIGLFNG 361
Query: 650 --KYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENL 707
W ++G +A+ S + +P+ A E+ R D A++ D C
Sbjct: 362 DPSDLSGVLTWAVEGARAWASN-KTLALPDTWRAAAEDYRVEQDLMGAFLSDHCIFRPGE 420
Query: 708 WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIK 767
S L Y + Q + R S R ++ LKQ+ +K + + ++ + +
Sbjct: 421 ITTSGDLYAHYVWWCRQAGEHAR---SQRAFSIELKQR--PEYMKNKVLARKSDGRVVFD 475
Query: 768 GLK-LKPA 774
G++ LKP
Sbjct: 476 GMRGLKPN 483
>gi|71276703|ref|ZP_00652972.1| Phage/plasmid primase P4, C-terminal [Xylella fastidiosa Dixon]
gi|71901935|ref|ZP_00683989.1| Phage/plasmid primase P4, C-terminal [Xylella fastidiosa Ann-1]
gi|71162495|gb|EAO12228.1| Phage/plasmid primase P4, C-terminal [Xylella fastidiosa Dixon]
gi|71728295|gb|EAO30472.1| Phage/plasmid primase P4, C-terminal [Xylella fastidiosa Ann-1]
Length = 843
Score = 367 bits (943), Expect = 3e-99, Method: Composition-based stats.
Identities = 97/496 (19%), Positives = 183/496 (36%), Gaps = 50/496 (10%)
Query: 308 SDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNN----VYIWSLTLDKITASIMNFLVSMK 363
+D N + + + +AD W+ + + L K++ I + +
Sbjct: 367 TDTANAVRIAKHYGKRLMVSAD--RWFVWEGTHWAHGTDAARLLALKLSKIIRGEVEQWR 424
Query: 364 EDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLD 423
D +E N K + + W R VE A A S+ + ++ LD
Sbjct: 425 TKRADTEKEKSKNAKIAVALEAWGKKSEMRSTVE--------AAMALAKSMLVVKAERLD 476
Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESE--- 480
+ L +G +DL TG E YIT+ + + F ++ E
Sbjct: 477 TDPWLLNCANGTVDLRTGTLKAHRPEDYITRVVLVNYTPDAAAPVFKKTLARITCEEGQA 536
Query: 481 --EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538
+ D+ R G G + + + G+G +GKSTL++LI G+ + A +
Sbjct: 537 QQPLSDFLQRWFGYCATGSVREHKLAVMYGMGRNGKSTLLDLISGILGSYAGVAAPGLLM 596
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598
+ + L G R++ ++ET+E + +KQ TGGD + AR + +
Sbjct: 597 DGGH----DRHPTEIADLAGRRMMTVNETSEGGILREGFVKQATGGDSLKARHMRSDFFE 652
Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA------------NRDASFAQK 646
P + ++ N ++ D W R ++IPF D +K
Sbjct: 653 FRP-THKLQLLTNHKPVIKGQDVGIWSRLMLIPFKARFGTAEEIEAGAAQYPIDHKITEK 711
Query: 647 LETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGEN 706
L + W + G + GL+ E+ A ++ + D +I D C +G
Sbjct: 712 LAAERE-GVLAWIVAGAVEWCKNGLNPT--EIVRDASKDYQTEQDRVTQFIKDECVLGME 768
Query: 707 LWEESHS-----LAKSYSEYREQELNYDRKRISTRTVTLNLKQK--GFIGGIKREKIEKE 759
E+ + L +Y+++ ++ Y +S L++ F E +E
Sbjct: 769 HEEKISTPMGGGLYPAYTQWCKESGVY---ALSKTRFLGELERCVPKFGKREALETVEVG 825
Query: 760 WKSKR-IIKGLKLKPA 774
+ + +I+G+ L A
Sbjct: 826 KRRRVLLIQGIGLVDA 841
>gi|170730309|ref|YP_001775742.1| hypothetical protein Xfasm12_1160 [Xylella fastidiosa M12]
gi|167965102|gb|ACA12112.1| phage-related protein [Xylella fastidiosa M12]
Length = 842
Score = 367 bits (942), Expect = 5e-99, Method: Composition-based stats.
Identities = 94/495 (18%), Positives = 181/495 (36%), Gaps = 49/495 (9%)
Query: 308 SDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNN----VYIWSLTLDKITASIMNFLVSMK 363
+D N + + + +A+ W+ + + + L K++ I + +
Sbjct: 367 TDTANAVRIAKHYGKRLMVSAE--RWFVWEGTHWAHGMDAARLLALKLSKIIRGEVEQWR 424
Query: 364 EDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLD 423
D +E N K + + W R VE A A S+ + ++ LD
Sbjct: 425 TKRADTEKEKSKNAKIAAALEAWGKKSEMRSTVE--------AAMALAKSMLVVKAERLD 476
Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFES---- 479
+ L +G +DL TG E YIT+ F + EF+ ++
Sbjct: 477 TDPWLLNCANGTVDLRTGTLKAHRPEDYITRVVPINFDPKATAPEFITTLARITCEEGQA 536
Query: 480 -EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538
+ + D+ R G G + + + G+G +GKSTL++LI G+ + A +
Sbjct: 537 QQPLSDFLQRWFGYCATGSVREHKLAVMYGMGRNGKSTLLDLISGILGSYAGVAAPGLLM 596
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598
+ + L G R++ ++ET+E + +KQ TGGD + AR + +
Sbjct: 597 DGGH----DRHPTEIADLAGRRMMTVNETSEGGILREGFVKQATGGDSLKARHMRSDFFE 652
Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA------------NRDASFAQK 646
P + ++ N ++ D W R ++I F D +K
Sbjct: 653 FQP-THKLQLLTNHKPVIKGQDVGIWSRLMLISFKARFGTAEEIEAGAAQYPIDHKITEK 711
Query: 647 LETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGEN 706
L + W + G + GL+ P + A ++ + D +I D C +G
Sbjct: 712 LAAERE-GVLAWIVAGAVEWCKNGLNP--PGIVRDASKDYQTEQDRVTQFIKDECVLGME 768
Query: 707 LWEE-----SHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK--GFIGGIKREKIEKE 759
E L +Y+++ + Y +S L++ F ++ +
Sbjct: 769 HEEPLTAPMGGGLYPAYTQWCKDSGVY---PLSKTRFLGELERCVPKFRNKRGTRTVDGK 825
Query: 760 WKSKRIIKGLKLKPA 774
+ +I+G+ L A
Sbjct: 826 RRELVVIQGIGLVDA 840
>gi|77412077|ref|ZP_00788403.1| bacteriophage protein, putative [Streptococcus agalactiae CJB111]
gi|77161882|gb|EAO72867.1| bacteriophage protein, putative [Streptococcus agalactiae CJB111]
Length = 759
Score = 366 bits (940), Expect = 7e-99, Method: Composition-based stats.
Identities = 112/545 (20%), Positives = 201/545 (36%), Gaps = 48/545 (8%)
Query: 261 DEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLL-ASRFSDAYNKAMFSIY 319
++ + W + ++ S Y + +G + +SD + +
Sbjct: 237 EKAELDTIWGS------AVRFYNKTIKNSKDYKSPEEFQRGEMQPDDYSDIGEAGLLARE 290
Query: 320 KKGHFLY-------TADTKAWYKKDKNNVYI--------WSLTLDKITASIMNFLVSMKE 364
+ D K W + ++ + + + K+ + S
Sbjct: 291 FGDKIAFTRETDYLAYDGKHWVEDEQLAMRQIHQFLDMQLEVAVTKLNNATQKLKQSGIP 350
Query: 365 DVFDLSEEPEDNNKNSKSPRFWFNTDYRRQN------VEENSKAKSTAQSLEAGSIFSIT 418
++ + N + DY++ ++ +A + A + ++
Sbjct: 351 EMLIQQGGKKLENAIETPIQLVAYQDYKKAFEFYKFVMKYRDYRNLSAIAKMAKHMVRMS 410
Query: 419 SDLLDSSSRFLGEQDGILDLETGQ--KVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY 476
LD + L + +DL G + Y+TK T + L + +
Sbjct: 411 VSDLDKNELLLNTPEATIDLSQGLSGIREHDSADYLTKMTNASPSDKGDGLWQETLATFF 470
Query: 477 FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEAS 536
+ ++++Y VGMA +G + I G G +GKST N I GN Y A
Sbjct: 471 CDDTDLINYVQEIVGMAAIGKVYQEHMIIAYGSGANGKSTFWNTIARVLGN-YSGKLSAE 529
Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNT 596
+ + +P + L G R++I SE +E +N A +KQ+ D + A Y
Sbjct: 530 ALTMSVRR---NVSPEMAELKGKRLIIASEMSEGMRLNTAMVKQLCSTDEILAEKKYKAP 586
Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLE 654
+ P S T + N V DD WRR IVIPF+ I R +FA L +
Sbjct: 587 FHFVP-SHTLVLYTNHLPKVGANDDGIWRRLIVIPFNAKITGRSDIKNFADYLYNEAAPA 645
Query: 655 AKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
W ++G + I + +P+V + R+ D ++ DCC+IG++L E+S L
Sbjct: 646 IMSWIIEGAEKAIKANFKLILPQVVADSVSAYREANDWMGQFLGDCCEIGDHLTEKSGEL 705
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPA 774
+Y + + Y R ST L GF +K ++KGL+LK
Sbjct: 706 YSAYRAHCARINEYTR---STTDFYTALANAGFT--------KKRTNKGVMVKGLQLKLE 754
Query: 775 FESVD 779
+ +D
Sbjct: 755 DDFLD 759
>gi|15839095|ref|NP_299783.1| hypothetical protein XF2505 [Xylella fastidiosa 9a5c]
gi|9107708|gb|AAF85303.1|AE004058_4 phage-related protein [Xylella fastidiosa 9a5c]
Length = 819
Score = 366 bits (940), Expect = 8e-99, Method: Composition-based stats.
Identities = 95/496 (19%), Positives = 178/496 (35%), Gaps = 56/496 (11%)
Query: 308 SDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLD-------KITASIMNFLV 360
+D N + + + + D W+ + + W+ D K++ I +
Sbjct: 343 TDMANAVRIAKHYGKRLMVSGD--RWFVWEGTH---WAHDTDAARLLALKLSKIIRGEVE 397
Query: 361 SMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSD 420
+ D +E N K + + W R VE A A + ++
Sbjct: 398 QWRTKRADTEKEKSKNAKIAAALEAWGKRSEMRSTVE--------AMMALAKCMIAVKPK 449
Query: 421 LLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFES- 479
LD+ L +G +DL TG E Y+T+ + + F +
Sbjct: 450 QLDTDPWLLNCANGTVDLRTGTLKAHRPEDYMTRVVPVNYTPDAAAPVFRKTLERITCEE 509
Query: 480 ----EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535
+ + D+ R G G + + + G+G +GKSTL++LI G + A
Sbjct: 510 GQAQQPLSDFLQRWFGYCATGSVREHKLAVMYGMGRNGKSTLLDLISGILGRYAGVAAPG 569
Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595
+ + + L+G R+V ++ET+E + +KQ TGGD + AR +
Sbjct: 570 LLMDAGH----DRHPTEIADLVGRRMVTVNETSEGGLLREGFVKQATGGDMLKARYMRAD 625
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA------------NRDASF 643
+ P + ++ N ++ D W R ++IPF D
Sbjct: 626 FFDFQP-THKLQLLTNHKPVIKGQDVGIWSRLMLIPFKARFGTAEEVEAGIAQYPIDHKI 684
Query: 644 AQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDI 703
+KL + W + G + +GL+ PE+ A ++ + D +I D C +
Sbjct: 685 TEKLAAERE-GVLAWLVAGAVEWYREGLNP--PEIVRDASKDYQTEQDRVTQFISDECVL 741
Query: 704 GENLWEE-----SHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK--GFIGGIKREKI 756
G E+ L +Y+++ + Y +S L++ F E
Sbjct: 742 GMEHEEKLTAPMGGGLYPAYTQWCKDSGVY---ALSKVRFLGELERCVPKFRKKHVYETP 798
Query: 757 EKEWKSK-RIIKGLKL 771
E + +I+G+ L
Sbjct: 799 EGGKRRMFLVIQGIAL 814
>gi|6960323|gb|AAF12794.2|AF195093_1 putative DNA-primase/helicase [Streptomyces coelicolor A3(2)]
Length = 426
Score = 366 bits (939), Expect = 9e-99, Method: Composition-based stats.
Identities = 92/450 (20%), Positives = 166/450 (36%), Gaps = 35/450 (7%)
Query: 340 NVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNT---DYRRQNV 396
W + D L + PR F T R
Sbjct: 2 GHTRWQIDEDDTVLWAAGDLAETI---------------ATHDPRGLFTTTALHKHRTRA 46
Query: 397 EENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKST 456
S + + + +D LD+ L G++DL TG P +
Sbjct: 47 MSTSGMNAMLTQARSAPGMVLKADRLDADPYALCTPRGVVDLRTGLLRAPDPNKDFHSRS 106
Query: 457 GTPFVEGEPSQEFLDLVSGYFE----SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGS 512
T + P +L ++ F ++++DY +G ++ G AQ + G G +
Sbjct: 107 TTVGPQQMPVPRWLRFLTDTFGADAEGQQMIDYLHLLLGYSITGDVGAQILPFLWGTGKN 166
Query: 513 GKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDE 572
GKS L++++ G+ Y A +M L L G R+ + SE D+
Sbjct: 167 GKSVLLDVMMKLLGD-YADAAPPGFLMAKPFE---GHPTDLAELHGRRVYVCSEIKPGDK 222
Query: 573 INAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF 632
+ A++K +TGGD + AR + +S P + +++ N V A+WRR +IPF
Sbjct: 223 FDEARVKLLTGGDRIKARRMRQDPFSFEP-THKLWLLGNHKPEVGTGGFAFWRRMRLIPF 281
Query: 633 DKPIAN--RDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGT 690
++ + + + + A L + W + G + Y+ D+ PE A +
Sbjct: 282 ERVVPDDRKIDNLADLLVMEEGPGILAWLIDGARRYLGGDRDLTGPERVRIATTAYAETE 341
Query: 691 DTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGG 750
D + ++CC +G L E +L +Y+ + E IS+R ++ + G
Sbjct: 342 DHTGRFYEECCRLGPELRAEQTALYAAYTAWCHNEGAQI---ISSRAFASRTRE---LVG 395
Query: 751 IKREKIEKEWKSKRIIKGLKLKPAFESVDD 780
+ K K ++ G+ L E +
Sbjct: 396 LASPKEMKVSNQRKYYPGIGLLTVEERETN 425
>gi|50843066|ref|YP_056293.1| phage-associated protein [Propionibacterium acnes KPA171202]
gi|50840668|gb|AAT83335.1| phage-associated protein [Propionibacterium acnes KPA171202]
gi|315106937|gb|EFT78913.1| phage/plasmid primase, P4 family protein [Propionibacterium acnes
HL030PA1]
Length = 752
Score = 366 bits (939), Expect = 9e-99, Method: Composition-based stats.
Identities = 100/564 (17%), Positives = 192/564 (34%), Gaps = 49/564 (8%)
Query: 240 TRGSSKGKEIARR-WSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLI 298
+++ +++ R S + W + + +
Sbjct: 212 YGQTAQARDLFDRKASLCEPPLSDHELESIWQS--ACRFAAKVEAQ---PGYLSPEAYAE 266
Query: 299 PKGLLASRFSDAYNKAMFSIYKKGHFLY-------TADTKAWYKKDKNNVYIWSLTLDKI 351
L F+D +M + + + W + I D+
Sbjct: 267 LTSLRPEDFTDVGQASMLTAEYSSRLAFTEATDWLVYEGGVWSESAPAAQGIAQELTDRQ 326
Query: 352 TASIMNFLVSMKEDVFDLSEEP--------------EDNNKNSKSPRFWFNTDYRRQNVE 397
A + L ++++ + + + F Y ++
Sbjct: 327 LAEAGHLLEKARDELMVTGANAVLAAASSKAKALGGFTSPQRAAYRAFEDAKAYEAFVLK 386
Query: 398 ENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTG 457
T+ EA + T LD+ L G D+ G + ITK T
Sbjct: 387 RRESRAITSCLREAHPMLLTTPARLDADPYLLNTPGGTWDVRDGTRRDHNPLDLITKQTA 446
Query: 458 TPFVEGEPSQEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKST 516
+ ++ + ++ +F+ E++ Y R VG+A +G + + G G +GKST
Sbjct: 447 LDPTD-TGAEIWNRALNVFFQSDRELIGYVQRIVGLAAIGTVMVEALVIAYGDGRNGKST 505
Query: 517 LMNLIKYAFGNQYV-INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA 575
N I G ++A+ I NR P L G R++I +E+ E ++
Sbjct: 506 FWNTIARVLGTYAGNMSADVLTIGGNR-----NVKPELAEAKGKRLIIAAESEEGVRLST 560
Query: 576 AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP 635
+ +KQ+ D + A Y ++ +P S T + N V D WRR IVIPF+
Sbjct: 561 STVKQLASTDQIYAEKKYKAPFAFTP-SHTLILYTNHLPRVGAMDAGIWRRLIVIPFNAV 619
Query: 636 IANRD--ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTY 693
I + ++A L W ++G + ++ + P + A R+ + +
Sbjct: 620 IESSSDVKNYADHLYETAGGAVLAWIMEGSRLIHAEDYQLTPPAQVVAASSAYREENNWF 679
Query: 694 QAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKR 753
++D C++ +L E + L + Y + + + R L+Q GF
Sbjct: 680 AQFLDARCEVDPSLSERAGDLYQEYRAWAQSTSGWARPM---ADFNATLEQSGFE----- 731
Query: 754 EKIEKEWKSKRIIKGLKLKPAFES 777
++ K + GL L F S
Sbjct: 732 ---RRKSKHGMYVYGLALTSEFNS 752
>gi|300933480|ref|ZP_07148736.1| phage-associated protein [Corynebacterium resistens DSM 45100]
Length = 754
Score = 365 bits (937), Expect = 1e-98, Method: Composition-based stats.
Identities = 103/561 (18%), Positives = 190/561 (33%), Gaps = 49/561 (8%)
Query: 243 SSKGKEIARRWSKQ-GSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKG 301
+ + +++ R + + E W + T + + + +
Sbjct: 215 TDEARDLFDRKAARCNPPLPEAEVEAIWRS--ATRFAKTVENQPGYVP-PEDFEASLDSV 271
Query: 302 LLASRFSDAYNKAMFSIYKKGHFLY-------TADTKAWYKKDKNNVYIWSLTLDKITAS 354
A +SD + Y WY+ + ++ A
Sbjct: 272 RPAD-YSDVGQAHALAKAYPDSLRYSEATDWLVYYDGVWYESAPAAQAVAQELTERQLAE 330
Query: 355 IMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFN-------------TDYRRQNVEENSK 401
L K+ + + + + FN Y ++
Sbjct: 331 AHELLEDAKDQLAATGAAMLLASMSKAKAQAMFNAAQQKAFAAFEDAKTYAAYALKRRES 390
Query: 402 AKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQ--KVKPTKELYITKSTG-T 458
T EA + T + LD+ L G DL G + +TK T
Sbjct: 391 RGITNCLKEARPMLLTTPEQLDADPYLLNTPSGTYDLRHGAASRRDHDPADLVTKQTSLD 450
Query: 459 PFVEGEPSQEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTL 517
P +G + + + +F+ E++ Y R VG+A +G + + G +GKST
Sbjct: 451 PGTDGA--HLWQEALEVFFQGDAELIAYVQRIVGLAAIGQVFVEALVIAYEDGRNGKSTF 508
Query: 518 MNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK 577
N I G Y N A + P L G R++I +E+ E ++ +
Sbjct: 509 WNTIARVLGT-YAGNMSADVLTIGGMR---NVKPELAEAKGKRLIISAESEEGVRMSTSV 564
Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI- 636
+KQ+ D + A Y ++ +P S T + N V D WRR IVIPF+ I
Sbjct: 565 VKQLASTDQIYAEKKYKAPFAFTP-SHTLILYTNHLPRVGAMDAGIWRRLIVIPFEAKIE 623
Query: 637 -ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQA 695
A+ ++A L T+ W ++G + ++ + P ++A R+ + +
Sbjct: 624 GASDIKNYADYLYTQAGGAILAWIMEGARLIHAEDYHLKAPARVVEASAAYREENNWFAQ 683
Query: 696 WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755
++D CD+ L E + L ++Y + + R + ++ GF
Sbjct: 684 FLDANCDLDPGLSERAGDLYQAYRAWAMSTSGWARPMV---DFNATVEHHGFT------- 733
Query: 756 IEKEWKSKRIIKGLKLKPAFE 776
K + GL LK F+
Sbjct: 734 -RKRTMHGMFVHGLALKNEFD 753
>gi|326790511|ref|YP_004308332.1| phage/plasmid primase, P4 family [Clostridium lentocellum DSM 5427]
gi|326541275|gb|ADZ83134.1| phage/plasmid primase, P4 family [Clostridium lentocellum DSM 5427]
Length = 729
Score = 365 bits (936), Expect = 2e-98, Method: Composition-based stats.
Identities = 98/444 (22%), Positives = 173/444 (38%), Gaps = 22/444 (4%)
Query: 306 RFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKED 365
R D N + + + D WY N V +D + + M D
Sbjct: 277 RLDDTDNAQTMADMFRSKLCFAYDVNKWYLY--NGVKWEEDRVDGVRLLANEMIDRMSND 334
Query: 366 -VFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDS 424
L E + ++ + + R + + S E + I S +S
Sbjct: 335 FALILGNMEEGKERKKQAVLYQNHLKSCRSHRGKTSILN------ETKHLLPIVSTTFNS 388
Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVM 483
+ G + + + Y++++T VE + + ++ F +E++
Sbjct: 389 RRDVINTPTGTYLIHDKEVRPHCYKDYLSQATQVSVVEDAKAPTWERFINEIFLGDQELI 448
Query: 484 DYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP 543
Y + +G +L G + Q G G +GK +++ Y F + YV +A I Q R
Sbjct: 449 RYVQKAIGYSLTGFTREQCMFIGYGDGANGKGVFKDILSYIF-DDYVKCPQAETISQIR- 506
Query: 544 PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPAS 603
+ +A+P +I LM +R+V+ E+N+ N IKQ+TG D +TAR Y S P
Sbjct: 507 -QGSEASPDIINLMDARLVVCVESNKGVRFNEGLIKQLTGEDKVTARRLYCEPMSFMP-Q 564
Query: 604 FTPFIVPNKHLFVRNPDDAWWRRYIVIPF--DKPIANRDASFAQKLETKYTLEAKKWFLK 661
F ++ N V D WRR VIPF D P +D KL K W ++
Sbjct: 565 FKLWLFTNHMPEVVGTDKGIWRRLKVIPFKLDLPEHKKDRQLKDKL-MKEVEGILWWCIE 623
Query: 662 GVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEY 721
G+ Y+ +GL PE ++ E ++ +DT ++ +C ++ L Y E+
Sbjct: 624 GIHLYLEEGLK--EPEAIIELVHEFKEESDTLGLFLRECTINKVGSKVQAKDLYTRYVEW 681
Query: 722 REQELNYDRKRISTRTVTLNLKQK 745
+ L++K++
Sbjct: 682 CRANNEVPDNK---TRFGLDMKKR 702
>gi|331087335|ref|ZP_08336403.1| hypothetical protein HMPREF0987_02706 [Lachnospiraceae bacterium
9_1_43BFAA]
gi|330408361|gb|EGG87836.1| hypothetical protein HMPREF0987_02706 [Lachnospiraceae bacterium
9_1_43BFAA]
Length = 769
Score = 364 bits (935), Expect = 2e-98, Method: Composition-based stats.
Identities = 87/469 (18%), Positives = 177/469 (37%), Gaps = 29/469 (6%)
Query: 308 SDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVF 367
+D + +F+ K Y + K WY D W + + M S+ + +
Sbjct: 318 NDNGSGRLFADVYKDIARYVPERKKWYVYDGTR---WIPDIGGLKT--MELAKSLADTLV 372
Query: 368 DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSR 427
+ D + DY + + S+ +A S++ I D +
Sbjct: 373 RYALTIADERRR---------KDYLEYSAKWQSRNYRNTYISDAQSVYPIAMSEFDRNIY 423
Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYF 486
+L Q+G LDL+TG+ T + +TK G + S F+ +S +E +
Sbjct: 424 YLNCQNGTLDLQTGEFHPHTPQDKLTKIAGAAYDPNAKSPRFIRFISEVMSGDKEKARFM 483
Query: 487 TRCVGMALLGGNKAQRFIHIRG-VGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545
+ +G L G + + G +GK TLM + G+ Y + I
Sbjct: 484 QKSLGYGLTGDTRYECMFFYYGATTRNGKGTLMESTLHVMGD-YGLTVRPETIAAKPSAN 542
Query: 546 AGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFT 605
+ + RL G R ISE +N A+IK MTG D + AR + N++ P F
Sbjct: 543 SQNPTEDIARLAGIRFANISEPRRGLVLNEAQIKSMTGNDTLNARFLHENSFDFKP-QFK 601
Query: 606 PFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKL-ETKYTLEAKKWFLKG 662
++ N + + R ++IPFD+ ++ + + + + W ++G
Sbjct: 602 LYVNTNYLPAITDMTLFSSGRIVIIPFDRHFEEWEQEQNLKAEFSKPEIASAILNWLIEG 661
Query: 663 VKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYR 722
+G + P A + +D Q ++++ + ++ + ++ ++Y +
Sbjct: 662 YTLLQEEGFN--QPTAVKDAIMSYQHDSDKMQLFVEEFLEKEKDAECRTSAVYQAYRNWC 719
Query: 723 EQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771
+ ++R L+ G + R++ + + ++ G +L
Sbjct: 720 NNNGYFAE---NSRNFNQALRTIGMVV---RKRPKDGGEKTTLLTGYRL 762
>gi|71897551|ref|ZP_00679796.1| Phage/plasmid primase P4, C-terminal [Xylella fastidiosa Ann-1]
gi|71732454|gb|EAO34507.1| Phage/plasmid primase P4, C-terminal [Xylella fastidiosa Ann-1]
Length = 843
Score = 364 bits (934), Expect = 3e-98, Method: Composition-based stats.
Identities = 97/497 (19%), Positives = 181/497 (36%), Gaps = 52/497 (10%)
Query: 308 SDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNN----VYIWSLTLDKITASIMNFLVSMK 363
+D N + + + +A+ W+ + + + L K++ I + +
Sbjct: 367 TDTANAVRIAKHYGKRLMVSAE--RWFVWEGTHWAHGMDAARLLALKLSKIIRGEVEQWR 424
Query: 364 EDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLD 423
D +E N K + + W R VE A A S+ + ++ LD
Sbjct: 425 TKRADTEKEKSKNAKIAAALEAWGKKSEMRSTVE--------AAMALAKSMLVVKAERLD 476
Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFES---- 479
+ L +G +DL TG E YIT+ + + F ++
Sbjct: 477 TDPWLLNCTNGTVDLRTGTLKAHRPEDYITRVVPVNYTPDAAAPVFKKTLARITCEEGQA 536
Query: 480 -EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538
+ + D+ R G G + + + G+G +GKSTL++LI G+ + A +
Sbjct: 537 QQPLSDFLQRWFGYCATGSVREHKLAVMYGMGRNGKSTLLDLISGILGSYAGVAAPGLLM 596
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598
+ + L G R++ ++ET+E + +KQ TGGD + AR + +
Sbjct: 597 DGGH----DRHPTEIADLAGRRMMTVNETSEGGILREGFVKQATGGDSLKARHMRSDFFE 652
Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA------------NRDASFAQK 646
P + ++ N ++ D W R ++IPF+ D +K
Sbjct: 653 FQP-THKLQLLTNHKPVIKGQDVGIWSRLMLIPFEARFGTAEEVEAGVAQYPIDHKITEK 711
Query: 647 LETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGEN 706
L + W + G + GL+ P + A ++ + D +I D C +G
Sbjct: 712 LAAERE-GVLAWVIAGAVEWYRDGLNP--PGIVRDASKDYQTEQDRVTQFIKDECVLGME 768
Query: 707 LWEE-----SHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWK 761
E L +Y+++ + Y +S L++ KR+ E
Sbjct: 769 HEEPLTAPMGGGLYPAYTQWCKDSGVY---ALSKTRFLGELERC-VPKFRKRDVKETVGT 824
Query: 762 SKRI----IKGLKLKPA 774
KR I+G+ L A
Sbjct: 825 GKRRRVLSIQGIGLVDA 841
>gi|238854132|ref|ZP_04644479.1| phage DNA polymerase, ATPase domain [Lactobacillus gasseri 202-4]
gi|238833208|gb|EEQ25498.1| phage DNA polymerase, ATPase domain [Lactobacillus gasseri 202-4]
Length = 782
Score = 364 bits (934), Expect = 3e-98, Method: Composition-based stats.
Identities = 109/545 (20%), Positives = 196/545 (35%), Gaps = 60/545 (11%)
Query: 262 EENFNYKWDTFDFEEIGDTA-KKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYK 320
E+ W + + G K+ Y+ L +SD +F
Sbjct: 262 EQELRTIWHS--AIKFGHRMASKKGYIPPEEYNQ---PNDDLHPYDYSDTGESYVFVNNC 316
Query: 321 KGHFLYTADTK-AWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDV------------- 366
K YT + W+ + IW + + F D
Sbjct: 317 KDRVCYTNQSGFMWF-----DGKIWQESEPLALGEVQRFTDKQLADAQLRVTKAYQVIQQ 371
Query: 367 -----------FDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIF 415
+ ++++ + + Y ++E S A
Sbjct: 372 NGVTSALQTMGKTKASRTFNDDQQATFKEYQNAKAYEAFILKERSTRGINGILTNARPKL 431
Query: 416 SITSDLLDSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTG-TPFVEGEPSQEFLDL 472
+ D++ L DG +L+ G + ITKST P +G + +
Sbjct: 432 VKEINEFDANPFLLNTPDGPYNLKQGIHGQQEIQASDLITKSTSCVPGSQGNSI--WQEA 489
Query: 473 VSGYFESE-EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVI 531
++ +F ++ +++Y VG+ +G + I G G +GKST N I G+ Y
Sbjct: 490 LNTFFCNDLALINYVQEIVGLVAIGQVYLEALIIAYGSGRNGKSTFWNTIANVLGS-YTG 548
Query: 532 NAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARL 591
+ A + P + + G R++I +E E +N + +KQ+ D + A
Sbjct: 549 HLSADALTTGVRR---NVKPEMAEVKGKRLIISAELEEGKRLNTSIVKQLCSTDEIYAEK 605
Query: 592 NYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD--ASFAQKLET 649
Y +S +P S T + N V D+ WRR IVIPF IA + ++AQ L
Sbjct: 606 KYMKPFSFTP-SHTIVLYTNYLPHVGGNDEGIWRRLIVIPFKATIAKHNDIKNYAQYLTE 664
Query: 650 KYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWE 709
+ +W ++G + I + + P KA ++ D ++++ C++ + +
Sbjct: 665 QAGPAVLQWIIEGAQRIIQQNYQLTTPAAVTKAVKDYHADNDWLGHFLNENCELDSSYQQ 724
Query: 710 ESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGL 769
+S L + Y EY + Y R ST LK GF K + ++GL
Sbjct: 725 KSGDLYQKYREYCQGIGEYTR---STTDFYTALKNAGFQRQRK--------NTGSYVRGL 773
Query: 770 KLKPA 774
+LK +
Sbjct: 774 RLKAS 778
>gi|116630098|ref|YP_815270.1| phage DNA polymerase [Lactobacillus gasseri ATCC 33323]
gi|116095680|gb|ABJ60832.1| Phage DNA polymerase, ATPase domain [Lactobacillus gasseri ATCC
33323]
Length = 788
Score = 364 bits (934), Expect = 3e-98, Method: Composition-based stats.
Identities = 109/545 (20%), Positives = 196/545 (35%), Gaps = 60/545 (11%)
Query: 262 EENFNYKWDTFDFEEIGDTA-KKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYK 320
E+ W + + G K+ Y+ L +SD +F
Sbjct: 268 EQELRTIWHS--AIKFGHRMASKKGYIPPEEYNQ---PNDDLHPYDYSDTGESYVFVNNC 322
Query: 321 KGHFLYTADTK-AWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDV------------- 366
K YT + W+ + IW + + F D
Sbjct: 323 KDRVCYTNQSGFMWF-----DGKIWQESEPLALGEVQRFTDKQLADAQLRVTKAYQVIQQ 377
Query: 367 -----------FDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIF 415
+ ++++ + + Y ++E S A
Sbjct: 378 NGVTSALQTMGKTKASRTFNDDQQATFKEYQNAKAYEAFILKERSTRGINGILTNARPKL 437
Query: 416 SITSDLLDSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTG-TPFVEGEPSQEFLDL 472
+ D++ L DG +L+ G + ITKST P +G + +
Sbjct: 438 VKEINEFDANPFLLNTPDGPYNLKQGIHGQQEIQASDLITKSTSCVPGSQGNSI--WQEA 495
Query: 473 VSGYFESE-EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVI 531
++ +F ++ +++Y VG+ +G + I G G +GKST N I G+ Y
Sbjct: 496 LNTFFCNDLALINYVQEIVGLVAIGQVYLEALIIAYGSGRNGKSTFWNTIANVLGS-YTG 554
Query: 532 NAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARL 591
+ A + P + + G R++I +E E +N + +KQ+ D + A
Sbjct: 555 HLSADALTTGVRR---NVKPEMAEVKGKRLIISAELEEGKRLNTSIVKQLCSTDEIYAEK 611
Query: 592 NYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD--ASFAQKLET 649
Y +S +P S T + N V D+ WRR IVIPF IA + ++AQ L
Sbjct: 612 KYMKPFSFTP-SHTIVLYTNYLPHVGGNDEGIWRRLIVIPFKATIAKHNDIKNYAQYLTE 670
Query: 650 KYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWE 709
+ +W ++G + I + + P KA ++ D ++++ C++ + +
Sbjct: 671 QAGPAVLQWIIEGAQRIIQQNYQLTTPAAVTKAVKDYHADNDWLGHFLNENCELDSSYQQ 730
Query: 710 ESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGL 769
+S L + Y EY + Y R ST LK GF K + ++GL
Sbjct: 731 KSGDLYQKYREYCQGIGEYTR---STTDFYTALKNAGFQRQRK--------NTGSYVRGL 779
Query: 770 KLKPA 774
+LK +
Sbjct: 780 RLKAS 784
>gi|300814293|ref|ZP_07094565.1| nucleoside triphosphatase, D5 family [Peptoniphilus sp. oral taxon
836 str. F0141]
gi|300511560|gb|EFK38788.1| nucleoside triphosphatase, D5 family [Peptoniphilus sp. oral taxon
836 str. F0141]
Length = 767
Score = 360 bits (924), Expect = 5e-97, Method: Composition-based stats.
Identities = 92/473 (19%), Positives = 181/473 (38%), Gaps = 29/473 (6%)
Query: 308 SDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVF 367
+D +F+ + K Y + KAWY ++ IW + M +++ +
Sbjct: 318 TDIGAGKIFADFYKDSLRYVPERKAWYFYEEG---IWIADTGSL--KAMKLCMNLANLLH 372
Query: 368 DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSR 427
L+ + ED +K +F R V S + E +++ D
Sbjct: 373 ILALDIEDEHKRKAYVKFSNRWQARGYRV-------SVLKDAEVHHPLNVS--DFDKDPY 423
Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYF 486
L +G L+L T + + Y++K + ++ + + +E +
Sbjct: 424 LLNCTNGTLNLRTMEFYEHRSSDYLSKMADVIYDPNSLNERWNRYIDEIMSGDKEKAKFL 483
Query: 487 TRCVGMALLGGNKAQRFIHIRG-VGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545
+ +G L G + + + G +GK TL I G Y + +
Sbjct: 484 QKILGYGLTGDTRHECMAILYGMTTRNGKGTLCESILKVLGT-YACASRPETLALKNKVN 542
Query: 546 AGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFT 605
+ + + RL G R V I E + +N A++K +TG D + AR + N++ P F
Sbjct: 543 SSGPSEEIARLAGVRFVNIPEPGKGLPLNVAQVKSLTGNDTINARFLHENSFDFKP-QFK 601
Query: 606 PFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKY-TLEAKKWFLKG 662
+I N V + R ++IPFDK +D + + + W ++G
Sbjct: 602 IYINTNYLPIVNDVTVFTSGRMLIIPFDKHFTEEEQDKTLKTEFAKEEVKSAILNWLIEG 661
Query: 663 VKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYR 722
K +GL IP+ A + ++ +D +++DC + G++ + + + Y +
Sbjct: 662 YKLLQKEGL--TIPDSVKDATLKYQKESDKIAIFMEDCLEEGKDYEVRTSEVYERYRSWS 719
Query: 723 EQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAF 775
+ Y S +T +L+ K IKR++ + ++ G +L F
Sbjct: 720 LENGYYLE---SMKTFKQSLESK---ATIKRKRPKDGKHKTTVLIGYRLISEF 766
>gi|85716953|ref|ZP_01047917.1| hypothetical protein NB311A_09386 [Nitrobacter sp. Nb-311A]
gi|85696232|gb|EAQ34126.1| hypothetical protein NB311A_09386 [Nitrobacter sp. Nb-311A]
Length = 460
Score = 360 bits (923), Expect = 7e-97, Method: Composition-based stats.
Identities = 103/481 (21%), Positives = 185/481 (38%), Gaps = 48/481 (9%)
Query: 305 SRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKE 364
++ F Y + +W+ N W L L
Sbjct: 21 DVVTEDSAALRFVEQHGADLRYCHSSGSWFVW---NGLRWQRDLTGAVFEKARLLARALG 77
Query: 365 DVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDS 424
ED + R+ + + S A + + ++++D D
Sbjct: 78 ---------EDQDARG------------RKTIGKTSFAGGIERFARNDRVTAVSADYWDR 116
Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE-SEEVM 483
LG G +DL TG P + ITKST +E + +L ++ + + ++
Sbjct: 117 DLWLLGTPGGTVDLRTGVLRNPIRSDGITKSTFCAPLE-DGCPRWLRFLAETTDKDQGLV 175
Query: 484 DYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP 543
+ + G L G + + G GG+GKS +N++ +Y + +
Sbjct: 176 RFLQQWCGYCLTGVTNQHALVFVYGPGGNGKSVFLNVVTAIM-AEYATTSAMDTFTAS-- 232
Query: 544 PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPAS 603
+ + + L L G+R+V SET E A+IK +TGGD +TAR + ++ +P
Sbjct: 233 -QNDRHSTELAMLNGARLVTASETEEGRAWAEARIKALTGGDKITARFMRQDNFTFTP-Q 290
Query: 604 FTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGV 663
F +V N + N DDA RR+ ++PF D +KL + +W + G
Sbjct: 291 FKLIVVGNHKPVLHNVDDAARRRFNIVPFMLKPEQPDHELERKLMAEAG-GILRWMIDGC 349
Query: 664 KAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDI----GENL-WEESHSLAKSY 718
+ GL PE A E D + W++DCC++ G + W+ S L +S+
Sbjct: 350 LDWQRAGLIR--PESVKAATEAYFSDQDLFGQWLEDCCEVRIDRGPHFIWDRSADLFESW 407
Query: 719 SEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESV 778
SEY + + S ++ ++++GF E + R + ++L+ A +
Sbjct: 408 SEYSHKAGE---EPGSKKSFGQLMQRRGF------EPYRQPGPGTRGFRFVRLRLAMKEN 458
Query: 779 D 779
D
Sbjct: 459 D 459
>gi|313813468|gb|EFS51182.1| phage/plasmid primase, P4 family protein [Propionibacterium acnes
HL025PA1]
Length = 752
Score = 359 bits (922), Expect = 9e-97, Method: Composition-based stats.
Identities = 99/564 (17%), Positives = 192/564 (34%), Gaps = 49/564 (8%)
Query: 240 TRGSSKGKEIARR-WSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLI 298
+++ +++ R S + W + + +
Sbjct: 212 YGQTAQARDLFDRKASLCEPPLSDHELESIWQS--ACRFAAKVEAQ---PGYLSPEAYAE 266
Query: 299 PKGLLASRFSDAYNKAMFSIYKKGHFLY-------TADTKAWYKKDKNNVYIWSLTLDKI 351
L F+D +M + + + W + I D+
Sbjct: 267 LTSLRPEDFTDVGQASMLTAEYSSRLAFTEATDWLVYEGGVWSESAPAAQGIAQELTDRQ 326
Query: 352 TASIMNFLVSMKEDVFDLSEEP--------------EDNNKNSKSPRFWFNTDYRRQNVE 397
A + L ++++ + + + F Y ++
Sbjct: 327 LAEAGHLLEKARDELMVTGANAVLAAASSKAKALGGFTSPQRAAYRAFEDAKAYEAFVLK 386
Query: 398 ENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTG 457
T+ EA + T LD+ L G D+ G + ITK T
Sbjct: 387 RRESRAITSCLREAHPMLLTTPARLDADPYLLNTPGGTWDVRDGTRRDHNPLDLITKQTA 446
Query: 458 TPFVEGEPSQEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKST 516
+ ++ + ++ +F+ E++ Y R VG+A +G + + G G +GKST
Sbjct: 447 LDPTD-TGAEIWNRALNVFFQSDRELIGYVQRIVGLAAIGTVMVEALVIAYGDGRNGKST 505
Query: 517 LMNLIKYAFGNQYV-INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA 575
N I G ++A+ I NR P L G +++I +E+ E ++
Sbjct: 506 FWNTIARVLGTYAGNMSADVLTIGGNR-----NVKPELAEAKGKQLIIAAESEEGVRLST 560
Query: 576 AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP 635
+ +KQ+ D + A Y ++ +P S T + N V D WRR IVIPF+
Sbjct: 561 STVKQLAFTDQIYAEKKYKAPFAFTP-SHTLILYTNHLPRVGAMDAGIWRRLIVIPFNAV 619
Query: 636 IANRD--ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTY 693
I + ++A L W ++G + ++ + P + A R+ + +
Sbjct: 620 IESSSDVKNYADHLYETAGGAVLAWIMEGSRLIHAEDYQLAPPAQVVAASSAYREENNWF 679
Query: 694 QAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKR 753
++D C++ +L E + L + Y + + + R L+Q GF
Sbjct: 680 AQFLDARCEVDPSLSERAGDLYQEYRAWAQSTSGWARPM---ADFNATLEQSGFE----- 731
Query: 754 EKIEKEWKSKRIIKGLKLKPAFES 777
++ K + GL L F S
Sbjct: 732 ---RRKSKHGMYVYGLALTSEFNS 752
>gi|331091162|ref|ZP_08340004.1| hypothetical protein HMPREF9477_00647 [Lachnospiraceae bacterium
2_1_46FAA]
gi|330405384|gb|EGG84920.1| hypothetical protein HMPREF9477_00647 [Lachnospiraceae bacterium
2_1_46FAA]
Length = 769
Score = 359 bits (921), Expect = 1e-96, Method: Composition-based stats.
Identities = 88/469 (18%), Positives = 178/469 (37%), Gaps = 29/469 (6%)
Query: 308 SDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVF 367
+D + +F+ K Y + K WY D W + + M S+ + +
Sbjct: 318 NDNGSGRLFADVYKDIARYVPERKKWYVYDGTR---WIPDIGGLKT--MELAKSLADTLV 372
Query: 368 DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSR 427
+ D + DY + + S+ +A S++ I D +
Sbjct: 373 RYALTIADERRR---------KDYLEYSAKWQSRNYRNTYISDAQSVYPIAMSEFDRNIY 423
Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYF 486
+L Q+G LDL+TG+ T + +TK G + S F+ +S +E + +
Sbjct: 424 YLNCQNGTLDLQTGEFHLHTPQDKLTKIAGAAYDPNAKSPRFIRFISEVMSGDKEKVRFM 483
Query: 487 TRCVGMALLGGNKAQRFIHIRG-VGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545
+ +G L G + + G +GK TLM + G+ Y + I
Sbjct: 484 QKSLGYGLTGDTRYECMFFYYGATTRNGKGTLMESTLHVMGD-YGLTVRPETIAAKPSVN 542
Query: 546 AGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFT 605
+ + RL G R ISE +N A+IK MTG D + AR + N++ P F
Sbjct: 543 SQNPTEDIARLAGIRFANISEPRRGLVLNEAQIKSMTGNDTLNARFLHENSFDFKP-QFK 601
Query: 606 PFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKL-ETKYTLEAKKWFLKG 662
++ N + + R ++IPFD+ ++ + + + + W ++G
Sbjct: 602 LYVNTNYLPAITDMTLFSSGRIVIIPFDRRFEEWEQEQNLKAEFSKPEIASAILNWLIEG 661
Query: 663 VKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYR 722
+G D P A + +D Q ++++ + ++ + ++ ++Y +
Sbjct: 662 YTLLQEEG--FDQPTAVKDAILSYQHDSDKMQLFVEEFLEKEKDAECRTSAVYQAYRNWC 719
Query: 723 EQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771
+ ++R L+ G + R++ + + ++ G +L
Sbjct: 720 NNNGYFAE---NSRNFNQALRTIGMVV---RKRPKDGGEKTTLLTGYRL 762
>gi|304360825|ref|YP_003856946.1| gp68 [Mycobacterium phage Angelica]
gi|302858409|gb|ADL71157.1| gp68 [Mycobacterium phage Angelica]
Length = 872
Score = 359 bits (920), Expect = 1e-96, Method: Composition-based stats.
Identities = 94/486 (19%), Positives = 178/486 (36%), Gaps = 40/486 (8%)
Query: 300 KGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFL 359
A +D N + Y DT W + + +
Sbjct: 416 PVAPAVTLTDTGNADLLVEAWGARLRYCPDTGKWLSWKGTRWEH-GTDQGEAIVAARQVV 474
Query: 360 VSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITS 419
++K D + + R ++ + +
Sbjct: 475 EAIKLDDDSPKDVIQ-----------------HRMRSLSRKGLENMVALAKCSPDMRVRL 517
Query: 420 DLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFES 479
LD+ L G++DL TG + + + + TK TG + + + ++G F
Sbjct: 518 ADLDAEPYELNTPSGVVDLRTGHLLPHSPDGWHTKITGAGYNPAAVAPAWQKFLAGTFGD 577
Query: 480 E-EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538
+ E++ Y R G+A +G + G G +GKS LM+++ G+ Y I A A+ +
Sbjct: 578 DVELIGYVQRLAGLAAIGKVTHHVLPFLFGGGSNGKSVLMDVLANVLGD-YAITAPANFL 636
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598
+ R + + RL G+R+V+ SE N + + AK+K +TGGD ++ R + +
Sbjct: 637 LAGR----DRHETEIARLHGARMVVCSEINAESKFDEAKVKVLTGGDILSGRYMRQDYFD 692
Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF--DKPIANRDASFAQKLETKYTLEAK 656
+P S T F++ N V ++WRR ++PF P R+ + A +L
Sbjct: 693 FTP-SHTLFLMGNHQPQVSAGGTSFWRRLRLLPFLHTVPPEQRNPNLAAELIRDEGAAIL 751
Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLW--EESHSL 714
W + G + + GL P L A +E + D +I +CC++ + +
Sbjct: 752 AWVVAGARQIAADGLR--EPGSVLAATKEYSEQEDALGRFISECCELTPGASGGAKPALV 809
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPA 774
K+Y + +S + L + R+ GL L+ +
Sbjct: 810 LKAYQRWAMSNGE--DAMVSQIKLGRELSAR-------FGVRSVAINGARVYAGLALQAS 860
Query: 775 FESVDD 780
++ +
Sbjct: 861 WDLAHE 866
>gi|297242715|ref|ZP_06926653.1| phage/plasmid DNA primase [Gardnerella vaginalis AMD]
gi|296888926|gb|EFH27660.1| phage/plasmid DNA primase [Gardnerella vaginalis AMD]
Length = 737
Score = 359 bits (920), Expect = 2e-96, Method: Composition-based stats.
Identities = 113/529 (21%), Positives = 194/529 (36%), Gaps = 34/529 (6%)
Query: 262 EENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKK 321
+ + W + ++ G + + + + +D +F+ + K
Sbjct: 231 DAELSKIW--YSAKKFGLKVASQEGYIPPSEYGKSY--EEYKPDDLTDIAMAEVFAKHNK 286
Query: 322 GHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVS-------MKEDVFDLSEEPE 374
+YT + W L + K+ I ++ + F +E
Sbjct: 287 NKAVYTM-SAGWLYWTGKKWEASELKVMKLYMLIAKKVLKNAGIEFKTAYEEFVQAESSG 345
Query: 375 DNNKNSKSPRFWFN-TDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQD 433
D + K+ Y + N +K + A S+ + ++ LD + L
Sbjct: 346 DKEQADKAKSEVNQAKQYLSFAKKMNDHSKVSGILKLAKSMLEVANEGLDRDAFILNTPC 405
Query: 434 GILDLETGQKVKPTKELYITKSTGTPFVEGE--PSQEFLDLVSGYFESEEVMDYFTRCVG 491
GI+DL+TG+ Y TK T Q LD+V+ +E + G
Sbjct: 406 GIVDLKTGELKAHDPCSYCTKMTAVCPSRENMGLWQTTLDMVTA--GDKEFQTFLQSHAG 463
Query: 492 MALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANP 551
L+G + + + G GG+GKST+ N + G+ Y A + A
Sbjct: 464 STLIGQVFEESLLLVYGSGGNGKSTVFNAEAHVLGD-YAGKIPAESLTTR----AKNVKV 518
Query: 552 SLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPN 611
L L G R ++ SET E ++ + +KQ+ D ++A Y ++ +P+ T + N
Sbjct: 519 DLAELCGKRFILASETEEGQRLSISMLKQIASVDDISAERKYYAPFTFTPSHST-ILYTN 577
Query: 612 KHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGL 671
V + D WRR V PF K I N + +L K +W ++G K YI
Sbjct: 578 HLPKVGSNDKGTWRRIFVAPFTKEIKNPKTDYVDELLQKAGGAILQWMIEGAKLYIQNSY 637
Query: 672 DVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRK 731
+V +AK+ R D +I D C G N E S SL SY ++ Y R
Sbjct: 638 KFPTCKVVEQAKDAYRAENDWIGHFITDYCIKGVNETEMSRSLYLSYRQWANLNGEYVR- 696
Query: 732 RISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDD 780
+ R + L G+ +K GL + P ++ +D
Sbjct: 697 --NDRDFSKALLLAGYS--------KKRTGKGYQWCGLSINPNLQAQED 735
>gi|297587097|ref|ZP_06945742.1| P4 family prophage LambdaSa04 [Finegoldia magna ATCC 53516]
gi|297575078|gb|EFH93797.1| P4 family prophage LambdaSa04 [Finegoldia magna ATCC 53516]
Length = 733
Score = 358 bits (919), Expect = 2e-96, Method: Composition-based stats.
Identities = 105/548 (19%), Positives = 190/548 (34%), Gaps = 27/548 (4%)
Query: 240 TRGSSKGKEIARR-WSKQGSTYDEENFNYKWDTF-----DFEEIGDTAKKRSTFTSLFYH 293
+ + +E+ + S ++ W + D +
Sbjct: 204 YGNTDEARELFDKKASLCSPPLPDDELEQIWRSACKFYKKVAASEDYVPPEEYNERYEEY 263
Query: 294 HGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITA 353
+ + +A F+ +G K W + + ++ T K+
Sbjct: 264 KPEKLTDIAMAEIFTKHNKDKAIYTISQGWLY--WTGKKWEDSELKVMSLYMETAKKVLE 321
Query: 354 SIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGS 413
+ +++ D K + Y + N K + A S
Sbjct: 322 NASIEFKETYQELADAEMMGSKEEKAQAKLKINSAKAYLNFAKKMNDHGKVSGILKLAKS 381
Query: 414 IFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLV 473
+ + ++ LD+ + L G++DL+T + + Y K T + ++ +
Sbjct: 382 LLEVKNEKLDADAFILNTPVGVIDLKTSEIKEHDPSYYCAKITALAPSKDN-MDMWIATL 440
Query: 474 SGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532
+E +++ G L+G + + G GG+GKST+ N + G+ Y
Sbjct: 441 RDVTGGDDEFINFLKFHAGSTLIGHVYEEALLIAYGDGGNGKSTVFNSEAHVLGD-YAGK 499
Query: 533 AEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLN 592
A + A L L G R ++ SET E ++++ +KQ+ D ++A
Sbjct: 500 IPAESLTTR----AKNVKVDLAELCGKRFILASETEEGQRLSSSMLKQIASVDDISAERK 555
Query: 593 YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYT 652
Y +S +P T + N V + D WRR +V PF I N + KL K
Sbjct: 556 YYAPFSFTPTHST-ILYTNHLPKVGSNDRGTWRRIVVAPFSVAIKNPKTDYIDKLLEKAG 614
Query: 653 LEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESH 712
+W ++G K YI G V AK+ ++ D +I D C G N E S
Sbjct: 615 EAILQWMIEGAKEYIDAGFKYPKCNVVDDAKKSYKEENDWINHFISDKCIKGTNYKEMSA 674
Query: 713 SLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLK 772
L + Y E+ Y R + R + L +G+ +K G+ +
Sbjct: 675 RLYQVYREWAGSNGEYIR---NNRDFSRALIAEGYE--------KKRTNRGIEWGGITIN 723
Query: 773 PAFESVDD 780
ES DD
Sbjct: 724 DLMESEDD 731
>gi|291536672|emb|CBL09784.1| phage/plasmid primase, P4 family, C-terminal domain [Roseburia
intestinalis M50/1]
Length = 769
Score = 357 bits (917), Expect = 4e-96, Method: Composition-based stats.
Identities = 88/469 (18%), Positives = 172/469 (36%), Gaps = 29/469 (6%)
Query: 308 SDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVF 367
+D + +F+ K Y + K WY D W + + M S+ + +
Sbjct: 318 NDNGSGRLFADVYKDIARYVPERKKWYVYDGTR---WIPDIGGLKT--MELAKSLADSLV 372
Query: 368 DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSR 427
+ D DY + + S+ +A S++ I D +
Sbjct: 373 RYALTITDERIR---------KDYLEYSAKWQSRNYRNTYISDAQSVYPIAMSEFDCNVY 423
Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYF 486
+L Q+G LDL+TG+ T + +TK G + + F VS E +
Sbjct: 424 YLNCQNGTLDLQTGEFHPHTPQDKLTKIAGAAYDPNAKNPRFTRFVSEVMSGDTEKARFM 483
Query: 487 TRCVGMALLGGNKAQRFIHIRG-VGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545
+ +G L G + + G +GK TLM + G+ Y + I
Sbjct: 484 QKSLGYGLTGDTRYECMFFYYGATTRNGKGTLMESTLHVMGD-YGLTVRPETIAAKPSAN 542
Query: 546 AGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFT 605
+ + RL G R ISE +N A+IK MTG D + AR + N++ P F
Sbjct: 543 SQNPTEDIARLAGVRFANISEPRRGLVLNEAQIKSMTGNDTLNARFLHENSFDFKP-QFK 601
Query: 606 PFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLET-KYTLEAKKWFLKG 662
++ N + + R ++IPFD+ ++ + + + W ++G
Sbjct: 602 LYVNTNYLPAITDMTLFSSGRVVIIPFDRHFEEWEQEQNLKAEFSRPEAASAILNWLIEG 661
Query: 663 VKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYR 722
+G P+ A + +D + ++++ + ++ + ++ ++Y +
Sbjct: 662 YTILKEEG--FAQPKAVKDATMSYQHDSDKMELFVEEFLEQEKDAECRTSAVYQAYRNWC 719
Query: 723 EQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771
+ ++R L+ IG I R + + ++ G +L
Sbjct: 720 NDNGYFAE---NSRNFNQALRT---IGTIVRRRPRDGGEKTTLLTGYRL 762
>gi|304360923|ref|YP_003857043.1| gp71 [Mycobacterium phage CrimD]
gi|302858672|gb|ADL71417.1| gp71 [Mycobacterium phage CrimD]
Length = 872
Score = 357 bits (916), Expect = 4e-96, Method: Composition-based stats.
Identities = 94/482 (19%), Positives = 178/482 (36%), Gaps = 40/482 (8%)
Query: 300 KGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFL 359
A +D N + Y DT W + + +
Sbjct: 416 PVAPAVTLTDTGNADLLVEAWGAKLRYCPDTGKWLSWKGTRWEH-GTDQGEAIVAARQVV 474
Query: 360 VSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITS 419
++K D + + R ++ + +
Sbjct: 475 EAIKLDDDSPKDVIQ-----------------HRMRSLSRKGLENMVALAKCSPDMRVRL 517
Query: 420 DLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFES 479
LD+ L G++DL TG + + + + TK TG + + + ++G F
Sbjct: 518 ADLDAEPYELNTPSGVVDLRTGHLLPHSPDGWHTKITGAGYNPAAVAPAWQKFLAGTFGD 577
Query: 480 E-EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538
+ E++ Y R G+A +G + G G +GKS LM+++ G+ Y I A A+ +
Sbjct: 578 DVELIGYVQRLAGLAAIGKVTHHVLPFLFGGGSNGKSVLMDVLANVLGD-YAITAPANFL 636
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598
+ R + + RL G+R+V+ SE N + + AK+K +TGGD ++ R + +
Sbjct: 637 LAGR----DRHETEIARLHGARMVVCSEINAESKFDEAKVKVLTGGDILSGRYMRQDYFD 692
Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF--DKPIANRDASFAQKLETKYTLEAK 656
+P S T F++ N V ++WRR ++PF P R+ + A +L
Sbjct: 693 FTP-SHTLFLMGNHQPQVSAGGTSFWRRLRLLPFLHTVPPEQRNPNLAAELIRDEGAAIL 751
Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLW--EESHSL 714
W + G + + GL P L A +E + D +I +CC++ + +
Sbjct: 752 AWVVAGARQIAADGLR--EPGSVLAATKEYSEQEDALGRFISECCELTPGASGGAKPALV 809
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPA 774
K+Y + +S + L + +R+ GL L+ +
Sbjct: 810 LKAYQRWAMSNGE--DAMVSQIKLGRELSAR-------FGVRSVATHGQRVYAGLALQAS 860
Query: 775 FE 776
++
Sbjct: 861 WD 862
>gi|163816182|ref|ZP_02207550.1| hypothetical protein COPEUT_02366 [Coprococcus eutactus ATCC 27759]
gi|158448602|gb|EDP25597.1| hypothetical protein COPEUT_02366 [Coprococcus eutactus ATCC 27759]
Length = 769
Score = 357 bits (915), Expect = 5e-96, Method: Composition-based stats.
Identities = 86/469 (18%), Positives = 173/469 (36%), Gaps = 29/469 (6%)
Query: 308 SDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVF 367
+D + +F+ K Y K WY D W + + M S+ + +
Sbjct: 318 NDNGSGRLFADVYKDIARYVPKRKKWYVYDGTR---WISDIGGLKT--MELAKSLADSLV 372
Query: 368 DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSR 427
+ D + DY + + S+ +A S++ I D +
Sbjct: 373 RYALTITDERRR---------KDYLEYSAKWQSRNYRNTYISDAQSVYPIAMSEFDRNIY 423
Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYF 486
+L Q+G LDL+TG+ T + +TK G + + F VS + +
Sbjct: 424 YLNCQNGTLDLQTGEFHPHTPQDKLTKIAGAAYDPKTKNPRFTRFVSEVMSGDMDKAKFM 483
Query: 487 TRCVGMALLGGNKAQRFIHIRG-VGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545
+ +G L G + + G +GK TLM + G+ Y + I
Sbjct: 484 QKSLGYGLTGDTRYECMFFYYGATTRNGKGTLMESTLHVMGD-YGLTVRPETIAAKPSAN 542
Query: 546 AGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFT 605
+ + RL G R ISE +N A+IK MTG D + AR + N++ P F
Sbjct: 543 SQNPTEDIARLAGVRFANISEPRRGLVLNEAQIKSMTGNDTLNARFLHENSFDFKP-QFK 601
Query: 606 PFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKL-ETKYTLEAKKWFLKG 662
++ N + + R ++IPFD+ ++ + + + + W ++G
Sbjct: 602 LYVNTNYLPAITDMTLFSSGRIVIIPFDRHFEEWEQEQNLKAEFSKPEAASAILNWLIEG 661
Query: 663 VKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYR 722
+G P+ A + +D + ++++ + ++ + ++ ++Y +
Sbjct: 662 YTLLQKEG--FSQPKSVKDATMSYQHDSDKIELFVEEFLEQEKDAECRTSAVYQAYRNWC 719
Query: 723 EQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771
+ ++R L+ IG + R + + ++ G +L
Sbjct: 720 NDNGYFAE---NSRNFNQALRT---IGSVVRRRPRDGGEKTTLLTGYRL 762
>gi|197303471|ref|ZP_03168510.1| hypothetical protein RUMLAC_02193 [Ruminococcus lactaris ATCC
29176]
gi|197297469|gb|EDY32030.1| hypothetical protein RUMLAC_02193 [Ruminococcus lactaris ATCC
29176]
Length = 769
Score = 355 bits (912), Expect = 1e-95, Method: Composition-based stats.
Identities = 86/469 (18%), Positives = 172/469 (36%), Gaps = 29/469 (6%)
Query: 308 SDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVF 367
+D + +F+ K Y + K WY D W + + M S+ + +
Sbjct: 318 NDNGSGRLFADVYKDIARYVPERKKWYVYDGTR---WIPDIGGLKT--MELAKSLADSLV 372
Query: 368 DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSR 427
+ D DY + + S+ +A S++ I D +
Sbjct: 373 RYALTITDERIR---------KDYLEYSAKWQSRNYRNTYISDAQSVYPIAMSEFDRNVY 423
Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYF 486
+L Q+G LDL+TG+ T + +TK G + + F VS E +
Sbjct: 424 YLNCQNGTLDLQTGEFHPHTPQDKLTKIAGAAYDPNAKNPRFTRFVSEVMSGDTEKARFM 483
Query: 487 TRCVGMALLGGNKAQRFIHIRG-VGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545
+ +G L G + + G +GK TLM + G+ Y + I
Sbjct: 484 QKSLGYGLTGDTRYECMFFYYGATTRNGKGTLMESTLHVMGD-YGLTVRPETIAAKPSAN 542
Query: 546 AGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFT 605
+ + RL G R ISE +N A+IK MTG D + AR + N++ P F
Sbjct: 543 SQNPTEDIARLAGVRFANISEPRRGLVLNEAQIKSMTGNDTLNARFLHENSFDFKP-QFK 601
Query: 606 PFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLET-KYTLEAKKWFLKG 662
++ N + + R ++I FD+ ++ + + + W ++G
Sbjct: 602 LYVNANYLPAITDMTLFSSGRIVIILFDRHFEEWEQEQNLKAEFSRPEAASAILNWLIEG 661
Query: 663 VKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYR 722
+G P+ A + +D + ++++ + ++ + ++ ++Y +
Sbjct: 662 YTLLQEEG--FAQPKAVKDATMSYQHDSDKMELFVEEFLEQEKDAECRTSAVYQAYRNWC 719
Query: 723 EQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771
+ ++R L+ IG + R++ + ++ G +L
Sbjct: 720 NDNGYFAE---NSRNFNQALRT---IGTVVRKRPRNGGEKTTLLTGYRL 762
>gi|160898867|ref|YP_001564449.1| P4 family phage/plasmid primase [Delftia acidovorans SPH-1]
gi|160364451|gb|ABX36064.1| phage/plasmid primase, P4 family [Delftia acidovorans SPH-1]
Length = 857
Score = 354 bits (908), Expect = 4e-95, Method: Composition-based stats.
Identities = 114/476 (23%), Positives = 192/476 (40%), Gaps = 32/476 (6%)
Query: 307 FSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDV 366
++ N ++ DT WY W + T + ++ +D+
Sbjct: 406 LTEFGNTERMLARYGDSLMFCPDTATWYVWTG---VYWRTAMGGNT-EVAHYAKETIKDL 461
Query: 367 FDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSS 426
E + F F + +R + + E+ + S LD
Sbjct: 462 PS-----EAASHADPGEFFAFCSLSQRAA-----MVAAMVKLAESDPRVCVPSSELDKHR 511
Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSG-YFESEEVMDY 485
LG ++G++DL TG + + EL IT S G + G F + +F+ E+++Y
Sbjct: 512 HLLGVKNGVVDLRTGVLMPASPELRITLSAGCEYNPGAKCPLFEQTLRDVFFDDLEMVEY 571
Query: 486 FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545
R G AL G + G G +GKST+ N ++ FG AS I
Sbjct: 572 VARTFGYALQGQPREDMMFIAFGNGANGKSTIFNAVRKVFGGYARSADAASFISDAMGGN 631
Query: 546 AGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFT 605
AG L+RL G+R V ++E +E E+ +K MTGGD +TAR E ++T
Sbjct: 632 AGGPREDLLRLRGARFVYVNEPDEGGELREGAVKAMTGGDAITARGIQAKHSIEIEPTWT 691
Query: 606 PFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN-----RDASFAQKLETKYTLEAKKWFL 660
++ N ++ D+ WRR ++PF++ N +D +KLE + +
Sbjct: 692 VYMPTNHKPIIKGTDNGIWRRMGLLPFERDFRNDPHIVKDDQRREKLEAEL-PGILALIV 750
Query: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSE 720
+ Y GL+ P L A + R+ D WI++CC+I ENL + L +S+
Sbjct: 751 RAGMRYRQSGLNP--PAKVLAASADYRKDMDLLGEWIEECCEIDENLHTKVSDLWESWET 808
Query: 721 YREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFE 776
Y + R S++ + L + F +K K RI +G+ L+ +
Sbjct: 809 YARRRG-LVRFISSSKALGRRLDSR-FPS-------DKGSKGVRIRRGIGLRDIAD 855
Score = 66.3 bits (160), Expect = 2e-08, Method: Composition-based stats.
Identities = 42/246 (17%), Positives = 75/246 (30%), Gaps = 21/246 (8%)
Query: 51 ACGFGFVCGVGEQPLYAFDID--SKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPF-- 106
G GF + + A D D + + + G L F
Sbjct: 72 YTGLGFAP-IANGGIVALDFDGCVSGGQITDARIEALISDTYAEFSPSG---TGLRAFYL 127
Query: 107 -----RMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVED 161
R + K+ ++ LD L ++F T K +
Sbjct: 128 GAMASRKDNAHKSKRVGGQAGAARLDGLFDIEFFGHNGFVTVTGK--ATPDTQLWGLQDT 185
Query: 162 TPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQY--TNREITAFLSCFGE 219
LS+ + + F + ++ + T + +L
Sbjct: 186 VAPLSQGVQQLYAQRFGDTGPLPAVGAVALAGEANLAALGPEKLGWTMDQAREYLFDC-- 243
Query: 220 EFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDE-ENFNYKWDTFDFEEIG 278
+ S EW+ +MA+HHE GS ++A WS G +Y ++ +WD+F + G
Sbjct: 244 -KASVSRAEWLNALMALHHEFDGSEDALDLADEWSATGDSYAGRKDVEGRWDSFGRDRGG 302
Query: 279 DTAKKR 284
R
Sbjct: 303 APITGR 308
>gi|228969624|ref|ZP_04130417.1| hypothetical protein bthur0004_62880 [Bacillus thuringiensis
serovar sotto str. T04001]
gi|228790090|gb|EEM37879.1| hypothetical protein bthur0004_62880 [Bacillus thuringiensis
serovar sotto str. T04001]
Length = 345
Score = 354 bits (907), Expect = 5e-95, Method: Composition-based stats.
Identities = 86/333 (25%), Positives = 155/333 (46%), Gaps = 21/333 (6%)
Query: 445 KPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRF 503
+ +EL +TK T F E E+L+ + F+ +E+ +Y R +G +L G Q
Sbjct: 3 QHDRELGLTKITNISFDENAKCPEWLNFLDQIFQGDKELTEYMQRLIGYSLTGEITEQIM 62
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVI 563
+ + G G +GKST +N IK G +Y A++ ++ + AN + RL+G+R V
Sbjct: 63 VFLIGGGSNGKSTFINTIKDLMG-EYGKQAKSDTFIKKKET---GANNDIARLVGARFVS 118
Query: 564 ISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAW 623
E+ E ++++ A +KQ+TGG+ + AR + P F F N ++ D+
Sbjct: 119 AIESEEGEQLSEAFVKQITGGEPVLARFLRQEYFEFIP-EFKVFFTTNHKPVIKGVDEGI 177
Query: 624 WRRYIVIPFD--KPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLK 681
WRR ++PF+ P RD +K+ + W ++G + GL+ P + +K
Sbjct: 178 WRRIRLVPFNLQLPKEKRDKKLPEKISLE-MPGILNWAIEGCLKWQKSGLN--DPAIVMK 234
Query: 682 AKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLN 741
A + ++ D ++ +CC E++ E+ L + Y+ + ++ R
Sbjct: 235 ATGDYKEEMDILGPFMFECCFKREDVQIEAKELYEVYANWC---FKNGEHQLKNRAFYRI 291
Query: 742 LKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPA 774
L+ +GF K E+ K+K IKG+ L
Sbjct: 292 LESQGF-------KRERGSKNKYYIKGVTLTDR 317
>gi|85715547|ref|ZP_01046528.1| hypothetical protein NB311A_17619 [Nitrobacter sp. Nb-311A]
gi|85697742|gb|EAQ35618.1| hypothetical protein NB311A_17619 [Nitrobacter sp. Nb-311A]
Length = 462
Score = 354 bits (907), Expect = 5e-95, Method: Composition-based stats.
Identities = 103/481 (21%), Positives = 182/481 (37%), Gaps = 48/481 (9%)
Query: 305 SRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKE 364
++ F G Y T AW++ N W L
Sbjct: 23 DIVTEDSAAMEFVDEHCGDLRYCHTTGAWFRW---NGVFWKRDDTGCAFQWARELAR--- 76
Query: 365 DVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDS 424
+ ED +K R + S A + + + ++T+ D
Sbjct: 77 ------KLAEDQDKRG------------RYLTSKVSFANAVERFAQVDPKVAVTASYWDR 118
Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVM 483
LG G +DL+TG +P ++ ITK+T ++ + ++ +++
Sbjct: 119 DPWKLGTPGGTVDLQTGILHEPRQDEGITKATSVAPLDQ-DCPLWKRFLNEATRGDVDLI 177
Query: 484 DYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP 543
+ + G L G + + G GG+GKS +N++ N Y A +
Sbjct: 178 RFLRQWCGYCLTGITREHALAFVHGSGGNGKSVFINIVTSIM-NDYATTAAMETFSAGKY 236
Query: 544 PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPAS 603
+ L L G+RIV SET E A+IKQMTGGD +TAR + ++ P
Sbjct: 237 AQ---HPTDLAMLRGARIVTASETEEGRAWAEARIKQMTGGDPITARFMRQDFFTFKP-Q 292
Query: 604 FTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGV 663
F I+ N + + DDA RR+ +IP D +KL + +W ++G
Sbjct: 293 FKLTIIGNHQPVLHSVDDAARRRFNIIPVIHSPETPDRDLERKLMIEA-PAILQWMIEGC 351
Query: 664 KAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE-----NLWEESHSLAKSY 718
+ GL PE A D W++DCC++ + +W+ S L +S+
Sbjct: 352 LDWQRNGLCR--PESVNAATAAYFSDQDLMGQWLEDCCEVKKDRGPNGIWDRSSDLFESW 409
Query: 719 SEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESV 778
+EY + + + S ++ +++++GF E R + ++L+ +
Sbjct: 410 AEYAHKAGD---EPGSKKSFGQSMQRRGF------EPYRIPNVGTRAFRFVRLRTMVKGS 460
Query: 779 D 779
D
Sbjct: 461 D 461
>gi|146277397|ref|YP_001167556.1| hypothetical protein Rsph17025_1354 [Rhodobacter sphaeroides ATCC
17025]
gi|145555638|gb|ABP70251.1| phage/plasmid primase, P4 family [Rhodobacter sphaeroides ATCC
17025]
Length = 470
Score = 354 bits (907), Expect = 5e-95, Method: Composition-based stats.
Identities = 100/475 (21%), Positives = 183/475 (38%), Gaps = 41/475 (8%)
Query: 302 LLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVS 361
L ++ MF+ + + W + + ++ W ++ A
Sbjct: 31 LPDDVLTEDAVALMFTAQYGQRARFDHEMGRWVMWEPDALF-WKQDRVQLAAHWCR---- 85
Query: 362 MKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDL 421
DL+ + N R V S A + ++T ++
Sbjct: 86 ------DLARDASMGNAPKVLER-----------VRRKSFLGGVEAMCRADPVHAVTHEV 128
Query: 422 LDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESE 480
D LG +DL TG+ P E IT+ + + E +
Sbjct: 129 WDPDPMLLGCPGVTVDLRTGKMRAPIPEDMITRQAAVAPDPDADCPNWKSFIRSVTREDD 188
Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540
++ + +G +L G K + + I G GG+GKS L++ + G+ Y A
Sbjct: 189 DLERFLQAFLGYSLTGSIKEHQMLFIHGNGGNGKSLLLSTVMGIMGD-YAQMASMDTFAS 247
Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600
+R + + L + G+R+V +SE ++ N ++ QMTGGD + AR + +
Sbjct: 248 SRYE---RHSTDLAAMRGARVVGVSEVSQGVGWNQQRLAQMTGGDRVRARFMRQDEFEYH 304
Query: 601 PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFL 660
P F +V N + + ++A RR ++PF D A KLE ++ +W +
Sbjct: 305 P-QFKLIVVGNHKPELSHVNEAMRRRMNIVPFTWKPEVPDQELALKLEPEW-PAILQWLI 362
Query: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDI---GENLWEESHSLAKS 717
+G + GL P+V + EE + DT+ W+++CC + +N W+ L S
Sbjct: 363 RGCLEWQEHGLR--KPQVICRETEEYFEEQDTFAQWLEECCIVDRRDKNCWDVLVDLYHS 420
Query: 718 YSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLK 772
+ + E L + +T L + GF K+ KS R+ G++L+
Sbjct: 421 WKTFAEARLE---PAGTAKTFGERLGECGFETAFKK----IAGKSARVRLGVQLR 468
>gi|24575137|gb|AAL06708.1| putative primase/helicase [Streptomyces globisporus]
Length = 474
Score = 352 bits (903), Expect = 1e-94, Method: Composition-based stats.
Identities = 78/413 (18%), Positives = 159/413 (38%), Gaps = 31/413 (7%)
Query: 296 KLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASI 355
++ GLL +D N +F + + WY+ D W D +
Sbjct: 62 SVLGVGLLPDSLTDRGNAKLFVRLYAQDYRHVT-GLGWYRWDGTR---WQSDEDDTVLWV 117
Query: 356 MNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIF 415
+ + +P ++ + R+ S + +
Sbjct: 118 AGEMAESIA-----ATDPRGVYSDAALRK-------HRRRALSTSGINALLSQARSAPGM 165
Query: 416 SITSDLLDSSSRFLGEQDGILDLETGQKV--KPTKELYITKSTGTPFVEGEPSQEFLDLV 473
+++ LD+ L G++DL +G+ P ++ + ++ P P+ + +
Sbjct: 166 VLSAGALDADPYMLCTPAGVVDLRSGKLRAADPDRDFHSRSTSIGPRQM--PTPRWDLFL 223
Query: 474 SGYFESE----EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529
+ F + E++ + +G +L G AQ + G G +GKS L++++ G+ Y
Sbjct: 224 TDTFGDDARGREMIRFLHLLLGYSLTGDVGAQVMPFLFGSGKNGKSVLLDVLIKLLGD-Y 282
Query: 530 VINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTA 589
A +M L L G R+++ SE D + +++K +TGGD + A
Sbjct: 283 ADAAPPGFLMARPFE---GHPTDLAELHGRRVIVCSEVKPGDRFDESRVKLLTGGDRIKA 339
Query: 590 RLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDA--SFAQKL 647
R + +S +P + +++ N V A+WRR +IPFD+ ++++ + A L
Sbjct: 340 RRMRQDFFSFAP-THKLWLLGNHRPEVGTGGYAFWRRMRLIPFDRVVSDQQKIDNLADIL 398
Query: 648 ETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDC 700
T+ W + G Y++ D+ PE A + D ++ +
Sbjct: 399 VTEEGPGILNWLITGAHHYLNSPRDLTGPETVRIATTAYAETEDHTGRFLTEH 451
>gi|114566987|ref|YP_754141.1| hypothetical protein Swol_1465 [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
gi|114337922|gb|ABI68770.1| conserved hypothetical protein [Syntrophomonas wolfei subsp. wolfei
str. Goettingen]
Length = 770
Score = 352 bits (902), Expect = 2e-94, Method: Composition-based stats.
Identities = 126/806 (15%), Positives = 267/806 (33%), Gaps = 99/806 (12%)
Query: 5 QWKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGF-VCGVGEQ 63
Q+ + +P G KR + + G G VCG
Sbjct: 17 QFCNWRYELRDGSQTKVPYMSGTKRKANVDDPTTFVAFDTAASATGYDGIGIRVCGR--- 73
Query: 64 PLYAFDID-SKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKK-KTTES 121
+ D+D +E + + I + + F + + + +T
Sbjct: 74 -IVGIDLDHCMEEGKLLPWAQEIVDRFNVTYIEISPSGEGIRIFALLPDSFEYDTQTYYI 132
Query: 122 TQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEIT 181
+G++++ G T + T T ++ DV + +
Sbjct: 133 KKGNIEVYIPGH----------TNRFLTVTGNT----------INGADVAETAEALTWLL 172
Query: 182 VPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEF---YNGSHDEWIPVVMAVHH 238
++ P+ + + A S GE+F +NG +
Sbjct: 173 DTYMQRPTPPTPAVAAPGESYLSDDEVIVKAASSKNGEKFTRLWNGDITGY-------KS 225
Query: 239 ETRGSSKGKEIARRWSKQGSTYDEENFN------YKWDTFD-FEEIGDTA-KKRSTFTSL 290
++ + I W + F KWD+ + G+T K + +
Sbjct: 226 QSEADAALVSILAFWCSGDKAQMDRLFRQSCLMREKWDSLRGVDSYGNTVINKMVSRMTD 285
Query: 291 FYHHGKLIPKGLLASRF------------------SDAYNKAMFSIYKKGHFLYTADTKA 332
+Y +IP+ A F +D +F+ + + Y + K
Sbjct: 286 YY--KPIIPRSA-AEDFGVEWLKELDPMDSSKYPWNDIGAGHIFADFFQDRLRYVPERKM 342
Query: 333 WYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFW--FNTD 390
W+ +W + A M + + + ++ + E +D +K ++ + +
Sbjct: 343 WFHYANG---VWQPDTGNLCA--MKYCMDLANLMYTFALEIKDEDKRKSYMKYASRWQSH 397
Query: 391 YRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKEL 450
R N+ + +A I+ D+ ++G L ++TG+ +
Sbjct: 398 SNRVNILK-----------DAQVHHPISYGSFDADIYIFNCKNGTLHIDTGEFTEHRSTD 446
Query: 451 YITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRG- 508
+TK + + S F + + + + +G L G + + + G
Sbjct: 447 LLTKKSPVVYDPMAYSGRFASYIDEIMSGDADRAKFLQKILGYGLTGDTRHECMTILYGV 506
Query: 509 VGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN 568
+GK TL + G+ Y + I + + + RL G R V I E
Sbjct: 507 TTRNGKGTLCESVLKVLGD-YGCASRPETIAMKSYTNGSQPSEDVARLAGVRFVNIPEPG 565
Query: 569 ENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYI 628
+ ++AAK+K MTG D + AR + N++ P F ++ N + + R I
Sbjct: 566 KGMVLDAAKVKAMTGNDTLNARYLHENSFDFQP-QFKIYVNANFLPVINDMTLFSSDRII 624
Query: 629 VIPFDKPIAN--RDASFAQKLETKYTL-EAKKWFLKGVKAYISKGLDVDIPEVCLKAKEE 685
+IPFD+ RD + ++ + W L+G + ++GL + P+ A E
Sbjct: 625 IIPFDRHFDEHSRDTTLKRRFAEEDVQSAILNWLLEGYRLLQTEGLFL--PKSVKDATER 682
Query: 686 ERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK 745
+ +D + +D + + + Y E+ ++ Y + L+
Sbjct: 683 YQHDSDKMALFFEDSLVADDTAEVMTARVYARYKEWCQENGTYPE---GMKNFKQGLQA- 738
Query: 746 GFIGGIKREKIEKEWKSKRIIKGLKL 771
+ R++ ++ + ++ G +L
Sbjct: 739 --FAEVVRKRPKRGGEKTTLLIGYRL 762
>gi|21223967|ref|NP_629746.1| ATP binding protein [Streptomyces coelicolor A3(2)]
gi|3192005|emb|CAA19404.1| putative ATP binding protein [Streptomyces coelicolor A3(2)]
Length = 756
Score = 352 bits (902), Expect = 2e-94, Method: Composition-based stats.
Identities = 157/792 (19%), Positives = 283/792 (35%), Gaps = 87/792 (10%)
Query: 8 EQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEK----IDKLPACGFGFVCGVGEQ 63
++A GF + P+ K P+ G + + + E+ G+ + +
Sbjct: 26 DRAAYFARLGFGVFPMPTNKKMPRAKGWPDLAMTTVEEVEEMWRSFTPSGWQNIALTLDG 85
Query: 64 PLYAFDIDSKDEKTANTFKDTFE-ILHGTPIVRIGQKPKIL-IPFRMNKEGIKKKKTTES 121
D+D K+ TA+ K T E L T P L +R + + K S
Sbjct: 86 WTV-VDVDPKNGGTASLEKLTAEYELPVTRTHHTASGPDSLHFIYRADPDRPIKSGPLSS 144
Query: 122 TQGHLDIL-GCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEI 180
+DI G G VA + Y ++S + + EI
Sbjct: 145 RYPGIDIKTGRGSLIVAPG-SVINGRRYE--------------VVSAAEPAVAPSWLSEI 189
Query: 181 TV----PLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAV 236
P+V +S PS+ ++ R T E+ A G + W+ V
Sbjct: 190 RGDAQYPVVPSARSRTPSRASAGHS-RAATLAELRALPPDDP-----GRGNGWLTQVAG- 242
Query: 237 HHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFT------SL 290
H + + + + + + T D + AK+R S+
Sbjct: 243 HLARNHTDHDSYLHELRAIDSESEVPHDKDRFMKTADSIWEREQAKERPKAAAPDKPKSI 302
Query: 291 FYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDK 350
+HH +D N + W D W+ D
Sbjct: 303 LWHHEH-----------TDLGNGRRLRDLHGEDMRHAP-GWGWLTWDGRR---WA-RGDG 346
Query: 351 ITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLE 410
M+ + + + EE + ++ D R S +A E
Sbjct: 347 QARRFMHSVADAISEAIESMEEKQRSD------------DLMRWFGRSCSGPGISAALNE 394
Query: 411 AGSIFSITSD--LLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE 468
A + I ++ D+ L +G++DL TG+ + ++ +T+ T +
Sbjct: 395 ASVMLPIETEISDFDADPHKLLVGNGVVDLRTGELLPVDRKYLLTRGTTVEYDPNADCPM 454
Query: 469 FLDLVSGYFESE-EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527
++D + F+ + E+++Y R GM L+G N Q + G G SGK+TL ++ G+
Sbjct: 455 WMDFLGWAFQGDIEMIEYIQRMFGMCLIGNNAHQVAFFLYGPGRSGKTTLTRVLSRLLGD 514
Query: 528 QYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCM 587
Y +A+ S + + N L RL G+R+V+ SET + IN A+ K+ TG D +
Sbjct: 515 -YATSADLSVFNE----SSSGHNEPLARLAGARLVVFSETRQGQRINEAQFKKFTGEDTL 569
Query: 588 TARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDASFAQ 645
TA + + PA FTP + N + D RR VIP I++ ++ +
Sbjct: 570 TASYKNKSWFEFLPA-FTPVMFGNAQPSI-AFDSGVERRMKVIPMRAQISDGQKNPKLVE 627
Query: 646 KLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE 705
++ W ++G + ++ D P+ +A +E ++ D +I++C E
Sbjct: 628 QMMLNEGPAIMAWAVEGARLTAAESFVPDPPQ-VAQAVKEYKRENDHIGDFIEECLVFDE 686
Query: 706 NLWEESHSLAKSYSEYREQELNYDRKRISTRT----VTLNLKQKGFIGGIKREKIEKEWK 761
S + YS++ E K+ R + LK G E +
Sbjct: 687 GATVASDVVWGRYSKWIEAGGVDFVKKADDRAGKSLLVRMLKTWSIENGTPIESFK--SS 744
Query: 762 SKRIIKGLKLKP 773
+ R ++G+ L
Sbjct: 745 NTRKLRGVALND 756
>gi|169347120|ref|ZP_02866062.1| D5 N like family [Clostridium perfringens C str. JGS1495]
gi|169296803|gb|EDS78932.1| D5 N like family [Clostridium perfringens C str. JGS1495]
Length = 756
Score = 352 bits (902), Expect = 2e-94, Method: Composition-based stats.
Identities = 134/737 (18%), Positives = 247/737 (33%), Gaps = 71/737 (9%)
Query: 63 QPLYAFDID--SKDEKTANTFKDTFEILHGTPIVRIGQKP--KILIPFRMNKEGIKKKKT 118
+ L A DID D K +D P I P K L F + + + T
Sbjct: 66 KNLVAIDIDNCVVDGKLTTLGQDIVNHF---PNSYIEYSPSGKGLRLFCLMNDSFQYDTT 122
Query: 119 TESTQGH-LDIL--GCGQYFVAYNIHPKTKKEY------------TWTTPPHRFKVEDTP 163
+G +++ G FV T+ Y TW H K E
Sbjct: 123 QYKMKGKNVEVYVGGYTNRFVT-----VTENIYQEGDINVCTDALTWLLTTH-LKREKRT 176
Query: 164 LLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYN 223
+ + YL + K + W+ + + ++ E L +
Sbjct: 177 SKTIQAQSYLSDA--SVIQKASSAKNADKFKSLWSGDISNCSSHSEADLALCSILAFYCG 234
Query: 224 GSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKK 283
G ++ + R SS +E TY ++ +
Sbjct: 235 GDKNQ-------IDRLFRNSSLFREKWDEI-HGNDTYGNLTIEKAVNSLTSVYKPINLDE 286
Query: 284 RSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYI 343
+ + H + A ++D +F+ + + Y + K+W+ I
Sbjct: 287 FNDELTRLKHDFNFPLGNMYA--WNDIGAGKLFADFYQEILRYVPERKSWFIYQDG---I 341
Query: 344 WSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAK 403
W I A M ++ + ++ + + D +K ++R + + S +
Sbjct: 342 WQKDTGNIVA--MKSVMELANLIYLCAIDITDEDKR---------KTFQRFSSKWQSHSY 390
Query: 404 STAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEG 463
+ +A I D L +G L+ + +TK +
Sbjct: 391 RVSILKDAQVYHPIKVSDFDKDIYMLNCLNGTYHLKNKCFYPHQSKDLLTKKANVSYEPQ 450
Query: 464 EPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRG-VGGSGKSTLMNLI 521
S F + E + + +G L G + + + G +GK TL I
Sbjct: 451 AKSHRFNSFIDEIMTGDNEKSSFLQKILGYGLSGDTRHECLFILYGVTTRNGKGTLCETI 510
Query: 522 KYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM 581
G Y A + I + G + + RL G R V ISE + +N A++K M
Sbjct: 511 LNLLGT-YACTARSETIALKQNNSQG-PSEDVARLAGVRFVNISEPQKGLVLNVAQVKSM 568
Query: 582 TGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--R 639
TG D + AR + N++ P F +I N V + R +IPFDK R
Sbjct: 569 TGNDTLNARFLHENSFDFKP-QFKLYINTNYLPSVTDLTIFKSDRIWIIPFDKHFNEEMR 627
Query: 640 DASFAQKLETKY-TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID 698
D + Q+ ++ W ++G A +GL +P+V +A + D + +I+
Sbjct: 628 DITLKQQFTSEPVKSAILNWLIQGYDALQREGL--SVPKVVKEATHQYEHDNDKIKLFIE 685
Query: 699 DCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEK 758
DC ++G E++ + Y ++ + + S + +L I R++ +
Sbjct: 686 DCLELG-GFEEKTSDIYYRYKQWCLENGQFAE---SMKNFKQSLSS---QFSIVRKRPKG 738
Query: 759 EWKSKRIIKGLKLKPAF 775
++ G +L F
Sbjct: 739 GGNKTTLLVGARLVSDF 755
>gi|304440020|ref|ZP_07399913.1| phage/plasmid primase [Peptoniphilus duerdenii ATCC BAA-1640]
gi|304371512|gb|EFM25125.1| phage/plasmid primase [Peptoniphilus duerdenii ATCC BAA-1640]
Length = 767
Score = 351 bits (900), Expect = 3e-94, Method: Composition-based stats.
Identities = 90/473 (19%), Positives = 178/473 (37%), Gaps = 29/473 (6%)
Query: 308 SDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVF 367
+D +F+ + K Y + KAW+ + IW + M + + +
Sbjct: 318 TDIGAGKIFADFYKDSLRYVRERKAWHFYEDG---IWIADTGSL--KAMKLCMKLANLLH 372
Query: 368 DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSR 427
L+ + ED +K +F R V S + E +++ D
Sbjct: 373 ILALDIEDEHKRKAYVKFSNRWQARGYRV-------SVLKDAEVHHPLNVS--DFDKDPY 423
Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYF 486
L +G L+L T + Y++K + ++ + + +E +
Sbjct: 424 LLNCTNGTLNLRTMEFYAHRSSDYLSKMADVIYDSKSLNERWNIYIDEIMSGDKEKAKFL 483
Query: 487 TRCVGMALLGGNKAQRFIHIRG-VGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545
+ +G L G + + + G +GK TL I G Y + +
Sbjct: 484 QKILGYGLTGDTRHECMAILYGMTTRNGKGTLCESILKVLGT-YACASRPETLALKNKVN 542
Query: 546 AGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFT 605
+ + + RL G R V I E + +N A++K +TG D + AR + N++ P F
Sbjct: 543 SSGPSEEIARLAGVRFVNIPEPGKGLPLNVAQVKSLTGNDTINARFLHENSFDFKP-QFK 601
Query: 606 PFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKY-TLEAKKWFLKG 662
+I N V + R ++IPFD+ +D + + + W ++G
Sbjct: 602 IYINTNYLPIVNDVTVFTSGRMLIIPFDRHFTEEEQDKTLKTEFAKEEVKSAILNWLIEG 661
Query: 663 VKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYR 722
K +GL IP+ A + ++ +D +++DC + G++ + + + Y +
Sbjct: 662 YKLLQKEGL--TIPDSVKDATLKYQKESDKIAIFMEDCLEEGKDYEVRTSEVYERYRSWS 719
Query: 723 EQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAF 775
+ Y S +T +L+ K IKR++ + ++ G +L F
Sbjct: 720 LENGYYLE---SMKTFKQSLESK---ATIKRKRPKDGKHKTTVLIGYRLISEF 766
>gi|163854284|ref|YP_001642327.1| P4 family phage/plasmid primase [Methylobacterium extorquens PA1]
gi|163665889|gb|ABY33256.1| phage/plasmid primase, P4 family [Methylobacterium extorquens PA1]
Length = 697
Score = 351 bits (900), Expect = 3e-94, Method: Composition-based stats.
Identities = 142/779 (18%), Positives = 262/779 (33%), Gaps = 112/779 (14%)
Query: 23 LRLGDKRPQRLGKWEEQLLSSEKID---KLPAC-GFGFVCGVGEQPLYAFDIDSKDEKTA 78
++ K P +L W L E I+ P G G + D+D
Sbjct: 1 MKPRTKEP-KLKNWTGITLEIEDIEAHGTFPEHFNIGIKLGSKSNGIVDVDLD------C 53
Query: 79 NTFKDTFEILHGTPIVRIGQKPKIL--IPFRMNKEGIK-KKKTTESTQGHLDILGCGQYF 135
+ L T G+ +R++ + K S + +++ G
Sbjct: 54 DAAVSLGARLLNTETRVFGRDDNRASHYLYRVHDPRSTLRFKHPVSGEVLVELRGNNSQT 113
Query: 136 VAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSK 195
V + RF+ P E D L + I+ V + S+
Sbjct: 114 VLPGSIYEDG-------SIIRFEDYSLPEPFETDWATLERQCGLISAGTVLSEFWKEGSR 166
Query: 196 --------TWTNNN--NRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSK 245
W + ++ R I A ++ + V +
Sbjct: 167 HALALALGGWAAHKRIDQGAFTRLIEAVAEYMNDDDVADRVE-------CVRDSYIDLAS 219
Query: 246 GKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLAS 305
G ++A W D I K ++ + L +
Sbjct: 220 GNKVA--W------------KGDLDQLIDYRIMLAISKWLMVSAKLELNPATQQSKKLPT 265
Query: 306 RFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKED 365
SD + F + + ++ D + +Y++ + +L + ++M+++ S D
Sbjct: 266 VTSDLQSGQDFCDHIGDNLIFCDDEERFYQRLND--VYEPASLASVKGTVMDYVKSFDAD 323
Query: 366 VFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSD----- 420
V N EE K KS +I ++
Sbjct: 324 V---------------------------TNYEEAKKLKSAQSMSRINAIVDVSRSSLRIS 356
Query: 421 --LLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE 478
++ +G ++G+LDL G+ VKP+ +T+ GT + F++ + F+
Sbjct: 357 SSQFNTDPFLVGCRNGVLDLRAGKLVKPS--CIVTRRLGTNYDSQARCPSFVEFLQQVFD 414
Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
E +D+ R VG L G Q G G +GKST + +I+ G+ Y + ++
Sbjct: 415 ADREKIDFIRRAVGYTLTGSTAGQCIFVAIGSGANGKSTFLKIIQELMGD-YGTSIPSNS 473
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
+M ++ + L G R V SE ++ AK+K MTGGD ++ R YG +
Sbjct: 474 LMASKF--GNDKTDDIASLNGRRFVSASEGEIGQKLAVAKVKLMTGGDIISCRPLYGQYF 531
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDASFAQKLETKYTLEA 655
+ P F + N ++ D+A WRR +I F RD +L+ +
Sbjct: 532 NMKP-EFKIWFGTNDLPVIQGGDEAIWRRIHLIDFPVSFKEGQRDGGLFDRLKLEL-PGI 589
Query: 656 KKWFLKGVKAY--ISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHS 713
W L+GV+ + G ++ P R +DT +++D CD E +
Sbjct: 590 LSWALQGVQELGEMRNGF-LNPPASVRNETTRYRSDSDTVASFVDVACDKVEGAIVMMNV 648
Query: 714 LAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLK 772
L ++Y + + + + L + F ++E + G+KLK
Sbjct: 649 LHEAYVRWCN---VSGLEALPSGLFGKELSRLDFPIKRRKEGNGR--------LGIKLK 696
>gi|51870034|ref|YP_073585.1| predicted ATPase [Lymphocystis disease virus - isolate China]
gi|51858242|gb|AAU10926.1| predicted ATPase [Lymphocystis disease virus - isolate China]
Length = 865
Score = 348 bits (893), Expect = 2e-93, Method: Composition-based stats.
Identities = 127/650 (19%), Positives = 225/650 (34%), Gaps = 85/650 (13%)
Query: 165 LSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNG 224
+ +D E F+ + L+ S N + ++ ++ EE +
Sbjct: 220 IMPQDKEPYLISFKNVKPKLIDKILSRKAEAIL----NEETRPSKLKYLINLLPEECAD- 274
Query: 225 SHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKW--------------- 269
D W+ V T GS +G ++ +SK+ Y+E+ W
Sbjct: 275 DRDVWLETGFCVWQITDGSIEGYDVWTSFSKKSEKYNEDECFDLWYRQMRPNDFTIASLY 334
Query: 270 ---DTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLY 326
++ E D + S +Y G + +A + + K H Y
Sbjct: 335 WLIKKYNSEGFADYVRLYECPPSKYYTDGSHVG---VAKIVHHHFGSEFKCVSIKNHVWY 391
Query: 327 TADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFW 386
D W + + A I+ L + V D + E + K +
Sbjct: 392 RYDGVTWAECHVG--VDLRRLISDSKAPILQTLDRQIKIVDDCLKGEETDEK-----YYQ 444
Query: 387 FNTDYRRQNVEENSK--------AKSTAQSLEAGSIFSITSDLL---------DSSSRFL 429
+ + + +EE K KS + S+ +L DS +
Sbjct: 445 WQEELAQLTLEELEKLMDRLFKIKKSLRMTQFKNSVMRECEELFYDPLFAQKIDSDPYLI 504
Query: 430 GEQDGILDLETGQKVKPTKELYITKSTGTPFVE---------------GEPSQEFLDLVS 474
++G+ D + E Y K ++ G +E L
Sbjct: 505 AFKNGVFDFKQKTFRAGRPEDYCCKKLNVNYINYGFSGPLSCDPADFNGPELKETLIFFQ 564
Query: 475 GYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
F E+ +F R + A +GGN + + G G +GK+ LI+ FG + +
Sbjct: 565 QVFPDVELRTFFIRQLASAFIGGNLEKICLFWTGSGNNGKTITQTLIEKMFG-VFAVKLS 623
Query: 535 ASDIMQNRPPEAGKANPSLIRL-MGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593
S + + G+ANP L R G R V++ E + ++ INA +K +TG D AR Y
Sbjct: 624 TSVLTGKK-LSTGQANPELARTGGGVRWVVMEEPDNDERINAGILKNLTGNDTFWARDLY 682
Query: 594 --GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFD---KPIANRDASFAQKLE 648
G E F ++ N ++ D A W R VIPF+ KP+ ++ ++L+
Sbjct: 683 CAGKDTKEIIPMFKLHVICNNLPEIKYADQAVWNRVRVIPFESVFKPVEECPETYEERLK 742
Query: 649 TKYTLEAKKWFLKGVKA-----------YIS-KGLDVDIPEVCLKAKEEERQGTDTYQAW 696
K L K+ K K +++ L+ + P LKA +E R D Y+ +
Sbjct: 743 AKTFLVDVKFNEKLCKMTEPLAYYLIYYWLNMDRLNYNAPNKVLKATKEYRNENDLYKQF 802
Query: 697 IDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746
+D+ L Y E+ + Y + + ++ G
Sbjct: 803 VDNNLITESGTILSDRLLYIKYKEWLNETHPYYIVPSRNKAIKKFVEVLG 852
>gi|255522605|ref|ZP_05389842.1| hypothetical protein LmonocFSL_15586 [Listeria monocytogenes FSL
J1-175]
Length = 540
Score = 346 bits (888), Expect = 9e-93, Method: Composition-based stats.
Identities = 91/360 (25%), Positives = 158/360 (43%), Gaps = 33/360 (9%)
Query: 304 ASRFSDAYNKAM-FSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSM 362
A RF D ++ + FS KG + Y D+K W K D + + + M
Sbjct: 210 AERFRDKFHDIVRFSYINKGFYFY--DSKVW-KYDN---------IGAVKTLADEVIKDM 257
Query: 363 KEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLL 422
K SE N++ F + R N + + K EA + + +
Sbjct: 258 K------SEFAYMENESDAEKAFMKHLKATRSNKGKTNMLK------EAQHLMPVLPEEF 305
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEE 481
D FL Q+G ++L+ G+ + ++ TK + + + + + + ++ F +E
Sbjct: 306 DRHKYFLNTQNGYINLQNGELINHDRQKMFTKISNIEYTDKIDAPLWQEFLNDIFEGDKE 365
Query: 482 VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQN 541
+++Y + VG +L G Q + G G +GKS +++I FG+ Y N + IM
Sbjct: 366 LINYIQKAVGYSLSGSTAEQVMFILFGNGRNGKSVFLDIINDIFGS-YATNIQPQTIMVK 424
Query: 542 RPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESP 601
+ ++ AN + RL G+R V +E NE ++ +KQ+TGGD +TAR Y + + +P
Sbjct: 425 Q--QSSNANSDIARLHGARFVTTTEPNEGVRLDEGLVKQLTGGDKVTARHLYKDEFEFTP 482
Query: 602 ASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAKKWF 659
F ++ N +R DD WRR ++PF I + D KL ++ T W
Sbjct: 483 -EFKIWMATNHKPIIRGRDDGIWRRLHLVPFTVKIPDEKVDKQLKYKLRSELT-GILNWA 540
>gi|114765603|ref|ZP_01444704.1| hypothetical protein 1100011001288_R2601_22901 [Pelagibaca
bermudensis HTCC2601]
gi|114542052|gb|EAU45085.1| hypothetical protein R2601_22901 [Roseovarius sp. HTCC2601]
Length = 605
Score = 346 bits (887), Expect = 9e-93, Method: Composition-based stats.
Identities = 105/534 (19%), Positives = 188/534 (35%), Gaps = 71/534 (13%)
Query: 307 FSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNN------VYIWSLTLDKITASIMNFLV 360
D N Y L+ WY+ N KI+A I+ +
Sbjct: 65 LHDHGNGQRLLHYYGEDVLFVPRLG-WYRWQGNRWLADEDELTVRRDAQKISARILAEIE 123
Query: 361 SM------------------------KEDVFDLSEEPED----------NNKNSKSPRFW 386
+ + DLS+E D +
Sbjct: 124 YLTLEPWEEERVQLARDTAGQLRELERRKPADLSQEDRDRRRALLQYSNQASEILDRQAA 183
Query: 387 FNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGIL----DLE--- 439
++ + +K T LEA + L++ + ++G L DL+
Sbjct: 184 RKKAHKAHARASGNSSKITNMLLEAKPEVACLIGDLNADPLAVNVKNGTLKFRLDLDPHD 243
Query: 440 ----------TGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRC 489
K +E I+K + + + S ++ + R
Sbjct: 244 AEWGDVGPSWKVTLEKHRREDRISKLIPVEYDPDAKCPHWQAFLDRVQPSRDMQVFLQRY 303
Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549
VG L G Q+ + G G +GKST ++ + F + Y + + A
Sbjct: 304 VGYCLTGKTTEQKLVFNYGGGRNGKSTFVDTLAKIFAD-YGTTVPIETLTGAEQRKGSDA 362
Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609
P L+RL G+R V SE + + A IK +TGG+ + R + E F I
Sbjct: 363 TPDLVRLPGARFVRASEPEQGTRMKEAMIKALTGGEAIMIRRM-MQEFVEVTPEFKLMIS 421
Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAKKWFLKGVKAYI 667
N +R DD WRR +++P+ + I D + KL + W ++G A+
Sbjct: 422 GNHKPEIRGSDDGIWRRVLLVPWLEQIPEEEVDPTLPDKLWAEA-PGILAWAVQGYLAWA 480
Query: 668 SKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIG--ENLWEESHSLAKSYSEYREQE 725
GL IP+ +A +E RQ +D + ++ C+I + +E+S L +++ +
Sbjct: 481 EGGL--SIPDAVRQATDEYRQESDKLRMFLQSECEITGLPDHFEKSSELRDAFNGW---L 535
Query: 726 LNYDRKRISTRTVTLNLKQK-GFIGGIKREKIEKEWKSKRIIKGLKLKPAFESV 778
L+ +RT+ LK + G + G E+ +S G+++K ++
Sbjct: 536 LDLGDAAWGSRTIARALKDRAGVVKGPNGEQFRPVKRSDTGYSGIRIKETTRNL 589
>gi|158318012|ref|YP_001510520.1| P4 family phage/plasmid primase [Frankia sp. EAN1pec]
gi|158113417|gb|ABW15614.1| phage/plasmid primase, P4 family [Frankia sp. EAN1pec]
Length = 725
Score = 345 bits (886), Expect = 1e-92, Method: Composition-based stats.
Identities = 98/487 (20%), Positives = 183/487 (37%), Gaps = 42/487 (8%)
Query: 304 ASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMK 363
A +D N +D +W++ W D +++ K
Sbjct: 273 AELETDDANALRLVAEYGNTIRRVSDMGSWWRWTGKR---WERDHDDAHVREAAKILARK 329
Query: 364 EDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLD 423
L Y+R ++ + +T ++ ++ + LD
Sbjct: 330 LPAETLE-----------------QRKYKRASLSSTGLSGATR-VAQSDPRVTVLARDLD 371
Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESE-EV 482
+ L Q G++DL TG L +T+ T + + ++ F + E+
Sbjct: 372 AHPHLLNTQSGVVDLVTGAVKPHDPWLMLTRITPLDVDTEATHPMWSEFLAETFGGDTEL 431
Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFG----NQYVINAEASDI 538
+ Y G+ALLG + + G G +GK ++ +++ G Y ++A +
Sbjct: 432 VAYVQSLCGLALLGDVREHVLPLMYGAGANGKGVILLVLQGLLGIADTGGYSVSAPDGFL 491
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598
M + RL G+R+V+ SE + AK+K++TGGD +T R G+ +
Sbjct: 492 MAG---NGTAHPTEIARLRGARLVVCSEQTSGRRFDEAKVKRLTGGDLLTGRFMRGDFFD 548
Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK--PIANRDASFAQKLETKYTLEAK 656
P+ T + N V ++WRR +IPFD P RD KL +
Sbjct: 549 FEPSHLT-VVATNHLPEVIEGGPSFWRRARLIPFDHVVPPERRDTELHTKLLSAEGPAIL 607
Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAK 716
W ++G I GL P L A ++ R D+ +++ D C + + W
Sbjct: 608 GWMVRGAMIVIGSGL--VDPPRVLAATDDYRISEDSLASFVRDDCIVNPHAWCTVPDFRT 665
Query: 717 SYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFE 776
Y + + +S + VT L + ++ +++ + S+RI +G+ L A
Sbjct: 666 RYEAHCAE---MGVDPLSAKAVTTRLTR---EFPVQSDRLSR--PSRRIYRGIGLVDADA 717
Query: 777 SVDDNSN 783
D+ +
Sbjct: 718 ESDEETG 724
>gi|283783337|ref|YP_003374091.1| nucleoside triphosphatase, D5 family [Gardnerella vaginalis 409-05]
gi|283441568|gb|ADB14034.1| nucleoside triphosphatase, D5 family [Gardnerella vaginalis 409-05]
Length = 774
Score = 345 bits (885), Expect = 2e-92, Method: Composition-based stats.
Identities = 96/488 (19%), Positives = 177/488 (36%), Gaps = 29/488 (5%)
Query: 295 GKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITAS 354
+L P + R D N +F+ + Y + K W+ D W+ + +
Sbjct: 306 QELKPDENIRYRNGDLGNGRLFADIFQNILHYVPERKMWFIFDGVR---WTCDIGTLKT- 361
Query: 355 IMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSI 414
M + + + +D S +W RR EA S+
Sbjct: 362 -MELCKDLALSLIRYAGVIKDERTRSMLVEYWNKWSSRRNREIY---------IKEAQSV 411
Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVS 474
+ I+ + D + Q+G LDL+ G K ITK + + S+ F V
Sbjct: 412 YPISMEAFDKNIYLFNCQNGTLDLQHGVFRKHLATDLITKVSPVFYDPKARSERFRQFVD 471
Query: 475 GYFESE-EVMDYFTRCVGMALLGGNKAQRFIHIRG-VGGSGKSTLMNLIKYAFGNQYVIN 532
+ E Y + +G AL G + + + G +GK TLM + G+ Y
Sbjct: 472 EIMSGDCEKALYLQKSLGYALSGDTRYECMFFLFGESTRNGKGTLMESVLSVMGD-YGKA 530
Query: 533 AEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLN 592
A I + P + + + RL G R ISE + +N+A++K MTG D + AR
Sbjct: 531 VRAETIALKKNPNSSQPTEDVARLAGVRFANISEPSRGLFLNSAQVKYMTGSDTLNARFL 590
Query: 593 YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETK 650
+ N++ P F ++ N + + R +IPF++ +D + + K
Sbjct: 591 HENSFDFKP-QFKLYVNTNYLPVISDMTVFSSDRMQIIPFNRHFEAWEQDKTLKAEFSKK 649
Query: 651 YTL-EAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWE 709
W L+G +G P L A +D + +D ++
Sbjct: 650 EVQSAILNWLLEGFTHLRDEGFKP--PNSVLDAIFSYAHDSDKMAQFAEDVLVKDQSSEI 707
Query: 710 ESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGL 769
+ + Y ++ + ++R L++ + R++ + + ++KG
Sbjct: 708 RTAVVYDHYKKWCIDNGCFSE---NSRNFNQELRK---FAEVVRKRPKTGGEKTTLLKGY 761
Query: 770 KLKPAFES 777
+LK F
Sbjct: 762 RLKSEFSD 769
>gi|61741085|gb|AAX54510.1| ATPase [Lymphocystis disease virus 1]
Length = 865
Score = 345 bits (884), Expect = 2e-92, Method: Composition-based stats.
Identities = 126/632 (19%), Positives = 219/632 (34%), Gaps = 85/632 (13%)
Query: 165 LSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNG 224
+ +D E F+ I L+ N + ++ + E +
Sbjct: 220 VMPQDKEPYLIGFKNIKPKLIDKILLQKAEAIL----NEETRPSKLQYLIDLLPLECAD- 274
Query: 225 SHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKW--------------- 269
D W+ + + T GS KG I +SK+ Y+E+ W
Sbjct: 275 DRDIWLEIGFCMWQITEGSPKGYTIWTSFSKKSEKYNEDECFDLWYRQMRSNNFTMASLY 334
Query: 270 ---DTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLY 326
++ E D + S +Y G + +A + + K H Y
Sbjct: 335 WLIKKYNSEGFADYVQLYECPPSKYYTDGSHVG---IAKIVHHHFGSEFKCVSIKNHIWY 391
Query: 327 TADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFW 386
D AW + + A ++ L + V DL E E + K +
Sbjct: 392 RYDGVAWLECHVG--VDLRRLISDSKAPVLQTLDRQIKTVSDLLEGEETDEK-----YYQ 444
Query: 387 FNTDYRRQNVEENSK--------AKSTAQSLEAGSIFSITSDLL---------DSSSRFL 429
+ + + +EE K KS + S+ +L DS+ +
Sbjct: 445 WQEELAQLTLEELEKLMDRLLKIKKSLRMTQFKNSVMRECEELFFDPLFAQKIDSNPYLI 504
Query: 430 GEQDGILDLETGQKVKPTKELYITKSTGTPFVE---------------GEPSQEFLDLVS 474
++GI D + E Y K +++ G +E L
Sbjct: 505 AFKNGIFDFKQKTFRTGRPEDYCCKKLTINYIDYNFGGPLSCEPVNFNGSELKEILIFFQ 564
Query: 475 GYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
F E+ +F R + A +G N + + G G +GK+ LI+ F + + +
Sbjct: 565 QVFPDVEIRTFFIRQLASAFVGANSEKICLFWTGSGNNGKTVTQTLIEKMF-SIFAVKLN 623
Query: 535 ASDIMQNRPPEAGKANPSLIRL-MGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593
S + + G+ANP L R G R ++ E + ++ INA +K +TG D AR Y
Sbjct: 624 TSVLTGKK-LSLGQANPELSRTGGGVRWAVMEEPDNDERINAGILKNLTGNDTFWARDLY 682
Query: 594 --GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFD---KPIANRDASFAQKLE 648
G E F I+ N ++ D A W R V+PF+ KP ++ ++L
Sbjct: 683 CAGKDTKEITPMFKLHIICNNLPEIKYADQAVWNRVRVVPFESVFKPWEECPETYNERLR 742
Query: 649 TKYTLEAKKWFLKGVKA-----------YIS-KGLDVDIPEVCLKAKEEERQGTDTYQAW 696
K K+ K K +++ L+ + P+ LKA ++ R D Y+ +
Sbjct: 743 LKTFPVDVKFNEKLCKMTEPLAYYLIYYWLNMDRLNYNPPDKVLKATKDYRNENDLYKQF 802
Query: 697 IDDCCDIGENLWEESHSLAKSYSEYREQELNY 728
ID+ +N L Y E+ + Y
Sbjct: 803 IDNNLTEEKNTILSDRLLYIKYKEWLNETHPY 834
>gi|301058441|ref|ZP_07199462.1| phage/plasmid primase, P4 family, C-terminal domain protein [delta
proteobacterium NaphS2]
gi|300447497|gb|EFK11241.1| phage/plasmid primase, P4 family, C-terminal domain protein [delta
proteobacterium NaphS2]
Length = 512
Score = 344 bits (882), Expect = 4e-92, Method: Composition-based stats.
Identities = 94/480 (19%), Positives = 192/480 (40%), Gaps = 35/480 (7%)
Query: 311 YNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSL-----TLDKITASIMNFLVSMKED 365
+F+ +G F++ D+ W+ ++ I + ++K+ + +++ +
Sbjct: 46 GAGIIFARLHEGKFIFNKDSLEWWVWAGHHWVIDKMNNALKDVEKVALWYIGQAIALSKQ 105
Query: 366 VFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFS--ITSDLLD 423
+ + + K R + + + + ++ + + S ++S+ D
Sbjct: 106 IEKAGSQ-NNKATIEKLQRDQRLCNKMVARLRTETGRQICLKTAHSNHVLSLEVSSEQFD 164
Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVE-GEPSQEFLDLVSGYF-ESEE 481
++G++DL+TG+ YITK++ + P+ E+ ++ E
Sbjct: 165 QDPWLFACKNGVIDLQTGEIRPGRPHDYITKASPVGWEGIEAPAPEWERVLLEIHNGDIE 224
Query: 482 VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQN 541
++ Y R G A++G G G +GK+T I G+ + Q
Sbjct: 225 IVRYMQRLYGSAIVGKTSEAVVPVQCGGGRNGKTTENETIAAVVGDMAGPIPSQMLLDQG 284
Query: 542 RPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESP 601
R + +P L+ L G RI SE E +AA++K ++G D +TAR + ++
Sbjct: 285 RYQNSAAPSPDLMDLKGLRIAFASEIEEGRRFSAARVKWLSGSDTITARAPHDRRSTKFR 344
Query: 602 ASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR----------DASFAQKLETKY 651
+ T F++ N D A+W R +IP++ +R D +KL ++Y
Sbjct: 345 PTHTLFLMTNSKPGAPANDFAFWSRVNLIPYEISFVDRQPKTPNERRIDKHIPEKLTSEY 404
Query: 652 TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEES 711
W ++G + GL PE L A E+ R+ D Q +ID+ C + + E +
Sbjct: 405 -PGILTWLVRGCLQWQKMGLCP--PEKVLAATEQYRRDEDFLQDFIDEYCFVDPSETESA 461
Query: 712 HSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771
L ++ Y N +K S ++ + + ++ +S +GL+L
Sbjct: 462 ADLYDAFKGY--WTSNVSKKPPSRKSFGQMI----------GSQFKRVKRSTIRYEGLRL 509
>gi|18496953|ref|NP_569803.1| hypothetical protein TM4_gp70 [Mycobacterium phage TM4]
gi|4336104|gb|AAD17635.1| gp70 [Mycobacterium phage TM4]
Length = 867
Score = 344 bits (882), Expect = 4e-92, Method: Composition-based stats.
Identities = 88/458 (19%), Positives = 176/458 (38%), Gaps = 37/458 (8%)
Query: 308 SDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVF 367
+D N + + ++ W W + D A +
Sbjct: 410 TDTGNADLLVRACSDRLRWCPESGKWLVWKGTR---WQPSPDGGEAIMA---------AI 457
Query: 368 DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSR 427
++ + + + + + + RR + + ++ LD+
Sbjct: 458 EVVQSIKVEDGDKAGGQHKMRSLQRRS-------LDNMVALAKCRPGMRVSLADLDADPY 510
Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE-SEEVMDYF 486
L G+++L+TG+ E + T+ TG + + + + F + +++Y
Sbjct: 511 ALNTPSGVVNLKTGELTPHRPEGWHTRVTGAGYERDGAAPRWWAFLHRTFGGDKSMVEYV 570
Query: 487 TRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEA 546
R G A +G + G G +GKS LM+++ G+ Y I A + ++ R
Sbjct: 571 QRLAGYAAIGEVTHHVLPFLFGAGSNGKSVLMDVLSAVLGD-YAITAPGNFLLAGRE--- 626
Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
+ + RL G+R+V+ SE N + + + AK+K +TGGD ++ R + + P S T
Sbjct: 627 -RHETEIARLHGARLVVCSEVNADSKFDEAKVKLLTGGDVLSGRFMRQDFFDFVP-SHTL 684
Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDA--SFAQKLETKYTLEAKKWFLKGVK 664
F++ N V+ +++RR+ +IPF+ + R+ A +L + W G +
Sbjct: 685 FLMGNHQPDVKAGGTSFFRRFRLIPFEHIVPERERVEGLAHQLVAEEGDAILAWIADGAR 744
Query: 665 AYISKGLDVDIPEVCLKAKEEERQGTDT-YQAWIDDCCDIGENLWEESHSLAKSYSEYRE 723
+ G+ P L A + + T T ++D+CC IGE E ++ + Y +
Sbjct: 745 QVLDGGMR--EPASVLAATAQYQDDTRTGVARFLDECCTIGEG-EAEVGAVHQCYIAWAI 801
Query: 724 QELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWK 761
+ + T L G +R + K
Sbjct: 802 A---HGEPLVDTAKFGRELS--GNQVARRRTAKARMAK 834
>gi|40807289|ref|NP_047955.2| gp9a [Streptomyces phage phiC31]
gi|40313246|emb|CAA07134.2| gp9a [Streptomyces phage phiC31]
Length = 805
Score = 343 bits (879), Expect = 9e-92, Method: Composition-based stats.
Identities = 91/471 (19%), Positives = 170/471 (36%), Gaps = 45/471 (9%)
Query: 308 SDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVF 367
SDA N + G Y + ++ D +T K + + +M +
Sbjct: 363 SDAMNAHALVAWTDGRIKYAS-GLGYFVWDG-------VTWVKSATRVRQEIHAMGAALV 414
Query: 368 DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSR 427
PE ++ + L + + ++ D+++
Sbjct: 415 LAGCLPESRG------------------FTMTTRIDALMTELRSVPSVHVEAEEFDANAH 456
Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESE-EVMDYF 486
L +G++DL TG+ K +T S + + + + F + +++ Y
Sbjct: 457 LLSFANGVVDLRTGKLRAHDKGDMLTVSLPIEYDPNAQAPRWEQFLQEIFPNNADLVGYM 516
Query: 487 TRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEA 546
R VG + G Q F + G G +GKS + FG +
Sbjct: 517 RRLVGYGITGNTSEQCFAVLWGKGANGKSVFTETLTDVFGRI-TKTTPFATFEDK--GNG 573
Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
G L L GSR+V+ SE ++ A +K++TG D +TAR ++ +P +F
Sbjct: 574 GGIPNDLAALRGSRLVMASEGESGKPMSEAVLKRVTGKDKVTARFLRQEFFTFAP-TFLI 632
Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVK 664
+ N ++ D+ WRR +IPF + A RD +KL + + W ++G
Sbjct: 633 MLATNHKPKFKSQDEGLWRRVKLIPFVRYFAPEERDYDLDRKLRAE-SAGIVAWAVRGAV 691
Query: 665 AYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCD-IGENLWEESHSLAKSYSEYRE 723
+ + GL PE A E R +D + D ++ SY ++ E
Sbjct: 692 EWYANGLG--DPESISTATREYRATSDALAGFFPGVLDAADDSAIVSGADAYNSYRDWCE 749
Query: 724 QELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPA 774
E + S + ++++G +K+ + + G+K A
Sbjct: 750 AEGLKSTEVWSRKAFYGAMEERGI--------GKKKTNTGIALVGVKFADA 792
>gi|41179390|ref|NP_958698.1| Bbp29 [Bordetella phage BPP-1]
gi|45569522|ref|NP_996591.1| primase [Bordetella phage BMP-1]
gi|45580773|ref|NP_996639.1| primase [Bordetella phage BIP-1]
gi|40950129|gb|AAR97695.1| Bbp29 [Bordetella phage BPP-1]
Length = 854
Score = 343 bits (879), Expect = 9e-92, Method: Composition-based stats.
Identities = 115/629 (18%), Positives = 233/629 (37%), Gaps = 52/629 (8%)
Query: 153 PPHRFKVEDT----PLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNR 208
PP + + + ED + K + +++ W+ + ++
Sbjct: 218 PPVGIDLAEARRLVAYVDNEDYDTWLKVGMSLHHEFDGSGEALALWDEWSATASNYASSE 277
Query: 209 EITAFLSCFGEEFYNGSHDEWI-PVVM-----AVHHETR-----------GSSKGKEIAR 251
++ FG+ N + W+ + AV E R + ++
Sbjct: 278 DVARRWDSFGKSGRNPTTARWLLKIGNQGKRDAVRAEKRTALDDAKALILACADSIDLVN 337
Query: 252 RWSKQGSTYDEENFNYKWD-----TFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASR 306
+++ + + + F+E+ DT + + K++P +
Sbjct: 338 DVARRAGEAAGTDLALRAELAGLIRARFKELTDTTLPVADVRAAMAGGRKVVPFNKQRRQ 397
Query: 307 FSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDV 366
++ N + +Y + W+ +Y + + +
Sbjct: 398 MTEFGNAERMLDHYGDGLMYVPEIDGWFTW--TGIYWRR----AAGVELEHLAKETIRAL 451
Query: 367 FDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSS 426
D ++ E + + ++ +F + ++ ++ + LD +
Sbjct: 452 PDEAKAIESDAERAEFFKFCAVSQ-------RAVMVRNMVSLAQSDPRVVVGVADLDKAP 504
Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSG-YFESEEVMDY 485
LG +G++DL TG+ + P + +T T T + F V+ +F +++ +
Sbjct: 505 HLLGVGNGVVDLTTGKLLPPDQAYRVTTITATEYDAAATCPLFEQTVADVFFGDADMIGF 564
Query: 486 FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545
F R +G +L+ G G +GKST++ I+ G A A + +
Sbjct: 565 FQRLIGYSLMAQPTEDVLAIPYGSGSNGKSTVLGAIRDVLGEH-AKMASADTFLSSGAAG 623
Query: 546 AGKA--NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPAS 603
A ++RL G+R V +SE +E E+ IK MTGG+ + AR Y T E +
Sbjct: 624 ATAGSAREDVLRLRGARFVYVSEPDEGSELREGLIKSMTGGEPLPARGLYSKTTVEVAPT 683
Query: 604 FTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN-----RDASFAQKLETKYTLEAKKW 658
+ F+ N V+ D A WRR + +PF + +D A+KL + W
Sbjct: 684 WVAFMPTNHRPIVKGDDHAIWRRLLPVPFTRNFDQDLTLTKDPDRAEKLAAEA-AGILAW 742
Query: 659 FLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSY 718
++G AY +GL P +A+++ + D W+D+CC++G E + L S+
Sbjct: 743 CVRGALAYQRQGLRP--PGAVRQARDDYKSDMDLLAEWLDECCEVGPAYVESNARLWASW 800
Query: 719 SEYREQELNYDRKRISTRTVTLNLKQKGF 747
+ + R S +++ L KGF
Sbjct: 801 EAFAKARGEL-RFIASAKSLGRRLDSKGF 828
Score = 276 bits (706), Expect = 9e-72, Method: Composition-based stats.
Identities = 99/436 (22%), Positives = 171/436 (39%), Gaps = 35/436 (8%)
Query: 6 WKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPL 65
++ + + NG+ +IP++ G KRP L W+ L + + + P G G +CG G QP+
Sbjct: 5 FQTHGRALLGNGYLIIPIKPGHKRPA-LDNWQTARLGAADLTRYPEHGVGVLCGQGAQPV 63
Query: 66 YAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE----- 120
A D+D+ D + A F + G R+G PKIL+ +R EG K
Sbjct: 64 VAIDVDTTDAELAARFVAWCQEHLGATCERVGNAPKILLAYRAESEGWGKATGAWFEDLA 123
Query: 121 STQGHLDILGCGQYFVAYNIHPKTKKEYTWTT---PPHRFKVEDTPLLSEEDVEYLFKFF 177
+ L++LG GQ FVAY++HP T + Y WT + D P+++E VE + F
Sbjct: 124 GDRHRLEVLGKGQQFVAYHVHPDTGRPYEWTDFFGGLDAMRASDLPVITEAQVEEALQVF 183
Query: 178 QEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFY----------NGSHD 227
+ + + + S+T + + A+ G + N +D
Sbjct: 184 EAMAEECGLARVTGSKSRTGLTSAPED---DPLMAYEPPVGIDLAEARRLVAYVDNEDYD 240
Query: 228 EWIPVVMAVHHETRGSSKGKEIARRWSKQGSTY-DEENFNYKWDTFDFEEIGDTAKKRST 286
W+ V M++HHE GS + + WS S Y E+ +WD+F G + + +T
Sbjct: 241 TWLKVGMSLHHEFDGSGEALALWDEWSATASNYASSEDVARRWDSF-----GKSGRNPTT 295
Query: 287 FTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSL 346
L+ G R + K K L AD+ +
Sbjct: 296 A-------RWLLKIGNQGKRDAVRAEKRTALDDAKALILACADSIDLVNDVARRAGEAAG 348
Query: 347 TLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTA 406
T + A + + + +++ D + D R + +R+ + E A+
Sbjct: 349 TDLALRAELAGLIRARFKELTDTTLPVADVRAAMAGGRKVVPFNKQRRQMTEFGNAERML 408
Query: 407 QSLEAGSIFSITSDLL 422
G ++ D
Sbjct: 409 DHYGDGLMYVPEIDGW 424
>gi|315497369|ref|YP_004086173.1| phage/plasmid primase, p4 family [Asticcacaulis excentricus CB 48]
gi|315415381|gb|ADU12022.1| phage/plasmid primase, P4 family [Asticcacaulis excentricus CB 48]
Length = 521
Score = 342 bits (878), Expect = 1e-91, Method: Composition-based stats.
Identities = 111/507 (21%), Positives = 188/507 (37%), Gaps = 48/507 (9%)
Query: 295 GKLIPKGLLASRFSDAYNKAMFSIYKKGHF-------------LYTADTKAWYKKDKNNV 341
+ K L A +D N GH L + W N
Sbjct: 10 AEPSAKELAAYDLNDFGNALRLIRIMGGHIDKDTVKPDIKRCRLLNLVGQGWIAF---NG 66
Query: 342 YIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSK 401
W +T A +VS + ++ D + + + D +R
Sbjct: 67 KHWDITFGDQLARQSAHMVSQRMRDPEVMTAIMDKHGRAPA-------DIQRYLDSLGQA 119
Query: 402 AKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQ------KVKPTKELYITKS 455
+ A +A SI + D + ++G + L + IT+
Sbjct: 120 GSTAAMLKQAEPYLSIEIEEFDRAPMAFNVRNGTVWLRQTEKGLKADLRPHDPGDRITRI 179
Query: 456 TGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKS 515
T + + +F LV+ + EV + R G A G Q F ++G G GKS
Sbjct: 180 ANTEYDPKAKAPQFEQLVATSLRNPEVRAFMQRACGYAFTGEIFEQGFFILQGKGADGKS 239
Query: 516 TLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMG-SRIVIISETNENDEIN 574
T+MN ++ G Y +A+ + P L+RL G +R+V+++E ++N
Sbjct: 240 TIMNALRDMAG-GYGASAKVETFLDTGQASPNGPQPELVRLAGETRLVLLAEPPRGAKLN 298
Query: 575 AAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK 634
IK TGGD +AR G + P +++ N V+ DD WRR VI F+
Sbjct: 299 EGLIKGWTGGDPYSARQIQGKNFEFVPKG-RLWMMCNALPVVKGDDDGIWRRMNVIMFEH 357
Query: 635 PIAN--RDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDT 692
+ RD +KL+ ++ W + GV ++ +GL PE E R+ +
Sbjct: 358 QVPEDQRDKRLPEKLKAEF-PGILNWIIAGVGDWLEQGLKP--PEKVRAVLENYRKTSSP 414
Query: 693 YQAWIDDCCDIGE---NLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIG 749
+ W+D+ C GE + + L SY + E+ + + +S R L Q+ +
Sbjct: 415 FGDWLDESCVYGEAAGDAVTGATVLYNSYKAWAEENGH--DRPMSVRAFGDALMQRQILL 472
Query: 750 GIKREKIEKEWKSKRIIKGLKLKPAFE 776
G + +K K ++LK E
Sbjct: 473 GPRLSDGKKTRKP------IRLKTLAE 493
>gi|291336267|gb|ADD95832.1| predicted ATPase [uncultured organism MedDCM-OCT-S09-C213]
Length = 890
Score = 341 bits (875), Expect = 2e-91, Method: Composition-based stats.
Identities = 124/642 (19%), Positives = 240/642 (37%), Gaps = 78/642 (12%)
Query: 189 KSIIPSKTWTNNNNRQYTN-----REITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGS 243
+ I P +T + + N + +TA LS E +EWI V +++ G
Sbjct: 269 RRIKPKRTREERQDLDFHNNIDMVKRLTAMLSRKRAE----DRNEWIRVGWILYNIGNGC 324
Query: 244 SKGKEIARRWSKQ-GSTYDEENFNYKWDTFDFEE--IGDTAKKRSTFTSLFYHH------ 294
+ ++I +S+Q +DE +W+ ++ IG S Y
Sbjct: 325 DEARDIWLDFSRQCDDKFDETECITQWNRMVKKDYSIGSLRHFASVDNPTAYDKLRDENV 384
Query: 295 GKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLD----- 349
K I + L S A +A++ +Y + K WY+ + W +
Sbjct: 385 KKYIQQSLGGSHNDIA--RALYELYGTEFICASIRHKLWYQYQN---HRWREIEEGIYLK 439
Query: 350 -KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSP----RFWFNTDYRRQNVEENSKAKS 404
+I+ SI+ S+ +D FD +D + + + + + +N+ +
Sbjct: 440 KRISTSILQKYSSLSKDYFDKLANAQDQGEQAMYKERIKQLMKLVNSLKSAPFKNNVMRE 499
Query: 405 TAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGE 464
+ GS + L+ + +G Q+G+ D + + + YI+ +
Sbjct: 500 CMEVFYDGSF----TKKLNKNPYLVGFQNGVYDTRIHAFREGSPDDYISLQMAIEYKRFN 555
Query: 465 PS----QEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNL 520
+ Q+ D +S F + V DYF +GGN+++ G G + KS L
Sbjct: 556 ETALEVQQVNDFLSKVFPDKSVRDYFLDTSSDVFVGGNQSKIVQVWSGEGDNAKSVTQTL 615
Query: 521 IKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRL-MGSRIVIISETNENDEINAAKIK 579
+ G+ Y + S I+ R ++ A P L+R G R ++ E ++ D IN +K
Sbjct: 616 FEKMLGD-YSVKLPTSLIIGKR-TQSSAACPELVRAGNGVRFAVLQEPDQKDVINIGILK 673
Query: 580 QMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN- 638
+++G D AR + +P F ++ N+ + D A W R ++PF+ +
Sbjct: 674 ELSGNDTFFARGLFKEGGEITP-MFKLILICNEPPQLPYGDKAVWNRIRLLPFEATFCDD 732
Query: 639 ---------------RDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAK 683
+D FA K+ +EA + L + + + +D P A
Sbjct: 733 APDTFEEQLLQKRFPKDRQFADKI--PGMIEAFAYMLLEHRKIVKQRID---PPKVKMAT 787
Query: 684 EEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLK 743
E R+ D Y+ +I++C L ++ E+ ++ L + + +T
Sbjct: 788 EGYRKKNDIYRQFIEECIIDDAKAKISLLELYTAFKEWFKESLPNHQIPVKNDVLTY--- 844
Query: 744 QKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDNSNII 785
F W G +++ + VD + I+
Sbjct: 845 ---FTKSWGEPGRGVRW------MGKRMRKLQDDVDSGNAIV 877
>gi|168214579|ref|ZP_02640204.1| primase [Clostridium perfringens CPE str. F4969]
gi|170713981|gb|EDT26163.1| primase [Clostridium perfringens CPE str. F4969]
Length = 754
Score = 341 bits (875), Expect = 3e-91, Method: Composition-based stats.
Identities = 91/469 (19%), Positives = 180/469 (38%), Gaps = 30/469 (6%)
Query: 308 SDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLD-KITASIMNFLVSMKEDV 366
SD N + + WY + N W L K+ L ++D+
Sbjct: 305 SDVGNAERLISIYGKDIKFNVNQGKWYVWNGVN---WELDNSFKVENLYRRVLRKFQKDI 361
Query: 367 FDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSS 426
+++ + ++ + + + E + K K A + + D
Sbjct: 362 VNINIQGDEQATSKQKEKAKAFVLRN----ETDGKIKGVLNQ--AKTFQGVNFIESDKDD 415
Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFV-EGEPSQEFLDLVSGYF-ESEEVMD 484
+ ++L + K + IT+ + F E + ++ ++ F +E+++
Sbjct: 416 YLFNTPEATINLRNLNQKKHDRRDLITQCSNYSFNRENDKCPNWIAFLNRIFCGDQELIN 475
Query: 485 YFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544
Y + VG +L G Q + G G +GKST + ++ G Y + +M+
Sbjct: 476 YVQKAVGYSLTGDMSEQCLFMLWGGGANGKSTFVKALEDIMGT-YAATIKGETLMEKNGQ 534
Query: 545 EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604
+ A L RL R+VI SE E N +K ++ G+ + R Y + P F
Sbjct: 535 DG--ARGDLARLTNKRVVIASELQEGQVFNEPLLKVLSAGETLPVRFMYQEEFMLKP-KF 591
Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEAKKWFLKG 662
+I+ NK V+ D WRR+ +IPF +D +F ++ W + G
Sbjct: 592 KLWIMTNKKPKVKGNDHGIWRRWRMIPFKYKFTEKEKDPNFYEEKLKPELEGILLWAITG 651
Query: 663 VKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYR 722
+ + +G + P+ ++A E+ + D +I+DCC I ++ ++ Y +
Sbjct: 652 YQMWKEQG--FEAPKEVMEAVEDYKMDMDQVARFIEDCCFIRDDAECTGSAMYDEYLNWC 709
Query: 723 EQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771
E +++ + +LK+KGF I K + + G+ +
Sbjct: 710 INEGEN--YKMTNHKLAQDLKEKGF--------INKRRTAGKYWIGIGI 748
>gi|298103519|ref|YP_003714761.1| gp11 [Streptomyces phage phiSASD1]
gi|293338460|gb|ADE43478.1| gp11 [Streptomyces phage phiSASD1]
Length = 834
Score = 341 bits (874), Expect = 3e-91, Method: Composition-based stats.
Identities = 94/483 (19%), Positives = 179/483 (37%), Gaps = 32/483 (6%)
Query: 308 SDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVF 367
SD + S + +G Y + +W + K+ ++++F+
Sbjct: 375 SDVQAAYLLSAFAEGQIKYAPGLG----FFTWSGRVWERSDSKVR-NMVHFIGRSLN--- 426
Query: 368 DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSI--FSITSDLLDSS 425
+ ++ + + R+ ++ K E SI ++ DS
Sbjct: 427 --AAAKRKTDEKAPDQKEDPGEGLRKAAKGFTTRRKIDDCLAELASIPSVHVSPTDFDSQ 484
Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFES-EEVMD 484
L ++G +DL TG+ + KE +T G + ++ + F + E+
Sbjct: 485 PELLSFKNGTVDLRTGKIREHRKEDLLTYCLGLNYRPEASCPRWVSFLEEVFPNMPEMPS 544
Query: 485 YFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544
YF R VG G Q F + G G +GKS + + F S +
Sbjct: 545 YFQRLVGYGTTGCTAEQCFAVLWGQGANGKSVATDTLTSIF-RDITETTPFSTFEEK--- 600
Query: 545 EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604
+G + L GSR V+ SE ++ A +K++TG D ++AR ++ P +F
Sbjct: 601 SSGGIPNDIAALRGSRFVMASEGESGKPMSEAVLKRVTGKDEISARFLRQEFFTFKP-TF 659
Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKG 662
+ N R D+ WRR +IPF + A RD + +KL + W +KG
Sbjct: 660 LLMLATNFKPKFRGQDEGLWRRVKLIPFTRFFAPEERDHTLDRKLLAEAE-GIAAWAVKG 718
Query: 663 VKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWE-ESHSLAKSYSEY 721
+ GL P+ + A ++ R+ +D + + + E + ++Y+ +
Sbjct: 719 AMEWFQYGLQ--DPQHIIDATKDYRRTSDALAGFFPGVLEFSDGANELTAGQAYQAYTHW 776
Query: 722 REQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDN 781
E E R+R + RT + ++ + K + G+++ D
Sbjct: 777 CEAEGLPARERWTRRTFLDAMAER--------KVQRKNTAKGVALVGVRIAADHADAPDG 828
Query: 782 SNI 784
I
Sbjct: 829 PGI 831
>gi|312115495|ref|YP_004013091.1| phage/plasmid primase, P4 family [Rhodomicrobium vannielii ATCC
17100]
gi|311220624|gb|ADP71992.1| phage/plasmid primase, P4 family [Rhodomicrobium vannielii ATCC
17100]
Length = 726
Score = 340 bits (873), Expect = 4e-91, Method: Composition-based stats.
Identities = 143/765 (18%), Positives = 265/765 (34%), Gaps = 124/765 (16%)
Query: 35 KWEEQLLSSEKIDKLPACGFGFVCG-VGEQPLYAFDID-SKDEKTANTFKDTFEILHGT- 91
W I + G G + G +G+ L+ D+D A G+
Sbjct: 67 WWSRNRTVEALIGDPRSGGIGVMLGDLGDGHLWCIDLDGCLGNDGAAPHAADVVKRFGSY 126
Query: 92 -PIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYT- 149
+ G+ K+ +++ L + G+ F H + K
Sbjct: 127 CEVSPSGRGLKLFFLI------------SDTDVAALGVTA-GKAFAGPGAHSEMKLMVRG 173
Query: 150 WTT-PPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQ-YTN 207
W+T + + V ++F ++ P + + + + + Q +
Sbjct: 174 WSTLTEKAYSRGALREIDAGAV----RWFIDVAGPAYQKQMKGGGERPRDESGSGQLFRL 229
Query: 208 REITAFLSCFGEEFYN--GSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENF 265
++ L EEF + H + A H G + + R W ++ +
Sbjct: 230 AKLAHDLEWLKEEFEDVIADHPD-----AAAHVAKEGQ---RALDRAWDNAAKPFEPTHE 281
Query: 266 NYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFL 325
+ + +I F+ G L
Sbjct: 282 DE---------------------PAGFDQDSVI---------------RAFTKAYAGELL 305
Query: 326 YTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRF 385
+ W++ D W K+ + + K K+
Sbjct: 306 FDHHAGKWFRFDG----YWRREETKLA---------LHYAREQSLKIASSEAKTLKTVPT 352
Query: 386 WFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVK 445
W + ++V E F++TSD+ + + LG +G +DL TG+
Sbjct: 353 WEAIERGARSVRE----------------FAVTSDVWNRDTMLLGTPNGTVDLRTGELRD 396
Query: 446 PTKELYITKSTGTPFVEGE------PSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGN 498
E I++ T + + +L + + + + G +L G
Sbjct: 397 ARPEDRISRVTAVAPIPHDEFRAKRDCPRWLAFLDEALAGDAGAIRFLQQWCGYSLTGET 456
Query: 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMG 558
+ Q+ + + G GGSGK T +N + G+ Y +N + ++ + L RL G
Sbjct: 457 REQKLVFVYGPGGSGKGTAINTVGDILGD-YAVNVGMETLTASKYE---RHTTELARLRG 512
Query: 559 SRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRN 618
+R+ SET + +IK +TG D +TAR + + +P F I N +R+
Sbjct: 513 ARMARASETEKGKAWAENRIKNLTGQDTITARFMRQDDFEFAP-EFKLTIFGNNRPSLRD 571
Query: 619 PDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEV 678
D A RR++++PFD P + A L+ ++ W + G + GL +P V
Sbjct: 572 VDAAIKRRFLILPFDHPPRRPNTKLADALKREW-PGILAWLIDGCLDWQESGLI--VPPV 628
Query: 679 CLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738
A +E DT+ W+ D CD+G + S +L S+S Y + T
Sbjct: 629 MDAATKEYFAAEDTFAQWLADRCDVGPEFVDTSDNLWDSWSRYAYGLGEEPGTKKGT--F 686
Query: 739 TLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL---KPAFESVDD 780
L Q+GF KR++I ++ K R +GL++ K ++DD
Sbjct: 687 AETLSQRGF---FKRDQIGRDRK--RGYRGLRVRKNKGDLAALDD 726
>gi|48697531|ref|YP_024889.1| gp49 [Burkholderia phage BcepB1A]
gi|47717501|gb|AAT37747.1| gp49 [Burkholderia phage BcepB1A]
Length = 919
Score = 340 bits (871), Expect = 7e-91, Method: Composition-based stats.
Identities = 113/487 (23%), Positives = 202/487 (41%), Gaps = 42/487 (8%)
Query: 305 SRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKE 364
SR D Y + +Y ++ + WY+ D + + T + FL + +
Sbjct: 465 SRLMDKYGDTL---------MYVSEIEQWYQWDG-------MRWNAATPEQLQFLAT--Q 506
Query: 365 DVFDLSEEPEDNNKNSKSPR-FWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLD 423
++ +++E D R + D ++ + +N + A + LD
Sbjct: 507 TIYSIAQEARDEENEEVRVRLAQWARDSQKTAMVKNIVIGA-----RAEPRVFARAANLD 561
Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSG-YFESEEV 482
+ R++G + I+DL+TG + P + IT+ T + + F + +F++ E+
Sbjct: 562 ADVRYIGAPNCIIDLQTGAALAPDRNARITQYTAVQYNPAADAPCFKQTIREAFFDNIEL 621
Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542
+ +F R +G ALLG K + G G +GKST+MN I+ G+ Y A + +
Sbjct: 622 IVFFKRLMGYALLGNPKQSWLVIPYGHGANGKSTIMNAIQRVLGD-YCRTASSDTFTSSE 680
Query: 543 PPEA---GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599
+ G L+RL +R+++ISE EN + A +K +TG D + AR E
Sbjct: 681 ASRSSSAGGPREDLVRLRSTRMLLISEVEENSHLREAIVKSLTGDDTIVARGVQAKASVE 740
Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN-----RDASFAQKLETKYTLE 654
F P + N ++ D+ WRR ++IPF++ D +K+ + +
Sbjct: 741 YKPRFVPIMSTNHKPVIKGSDNGIWRRIMMIPFERNFREDPNIPEDVDRPEKIAAE-SEG 799
Query: 655 AKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
+W ++G Y G V +P + +A +E R+ D WI+ + + + L
Sbjct: 800 VLRWLVEGAVEYQQFG--VTVPHIIREATDEYRKDMDLLSGWIESRLEFDPDAFVTPQDL 857
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPA 774
S+ Y R + V L K G G KR + R G++LK A
Sbjct: 858 FTSWQSYA---TPIGLMRFVSTPVALGRKLAG-RKGFKRAQ-NIGGMRGRCFVGVRLKTA 912
Query: 775 FESVDDN 781
E V +
Sbjct: 913 AEVVFNG 919
>gi|295108406|emb|CBL22359.1| phage/plasmid primase, P4 family, C-terminal domain [Ruminococcus
obeum A2-162]
Length = 769
Score = 339 bits (869), Expect = 1e-90, Method: Composition-based stats.
Identities = 84/469 (17%), Positives = 171/469 (36%), Gaps = 29/469 (6%)
Query: 308 SDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVF 367
+D + +F+ K Y + K WY D W + + M S+ + +
Sbjct: 318 NDNGSGRLFADAYKDIARYVPERKKWYVYDGTR---WIPDIGGLKT--MELAKSLADSLV 372
Query: 368 DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSR 427
+ D + DY + + S+ +A S++ I D +
Sbjct: 373 RYALTITDERRR---------KDYLEYSAKWQSRNYRNTYISDAQSVYPIAMSEFDRNVY 423
Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYF 486
+L Q+G LDL+TG+ T + +TK G + + V+ + +
Sbjct: 424 YLNCQNGTLDLQTGEFHPHTPQDKLTKIAGAAYDPNAKNPRSTRFVAEVMSGDADKARFM 483
Query: 487 TRCVGMALLGGNKAQRFIHIRG-VGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545
+ +G L G + + G +GK TLM + G+ Y + I
Sbjct: 484 QKSLGYGLTGDTRYECMFFYYGATTRNGKGTLMESTLHVMGD-YGLTVRPETIAAKPSAN 542
Query: 546 AGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFT 605
+ + RL G R ISE +N A+IK MTG D + AR + N++ P F
Sbjct: 543 SQNPTEDIARLAGVRFANISEPRRGLVLNEAQIKSMTGNDTLNARFLHENSFDFKP-QFK 601
Query: 606 PFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLET-KYTLEAKKWFLKG 662
++ N + + R ++IPFD+ ++ + + + W ++G
Sbjct: 602 LYVNTNYLPAITDMTLFSSGRIVIIPFDRHFEEWEQEQNLKAEFSRPEAASAILNWLIEG 661
Query: 663 VKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYR 722
+G P+ A + +D + ++++ + + + ++ ++Y +
Sbjct: 662 YTILKEEG--FAQPKAVKDATMSYQHDSDKMELFVEEFLEEENDAECRTSAVYQAYRNWC 719
Query: 723 EQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771
+ ++R L+ IG + R + + ++ G +L
Sbjct: 720 NDNGYFAE---NSRNFNQALRA---IGTVVRRRPRDGGEKTTLLTGYRL 762
>gi|48697236|ref|YP_024966.1| putative primase/helicase protein [Burkholderia phage BcepC6B]
gi|47779042|gb|AAT38405.1| putative primase/helicase protein [Burkholderia phage BcepC6B]
Length = 888
Score = 337 bits (865), Expect = 3e-90, Method: Composition-based stats.
Identities = 128/625 (20%), Positives = 221/625 (35%), Gaps = 51/625 (8%)
Query: 171 EYLFKFFQEITVPLVKDKKSIIPSKTWT---NNNNRQYTNREITAFLSCFGEEFYNGSHD 227
+ E + K + + W + L + +
Sbjct: 297 DDGLALAHEFSARSSKYNPRFLDERVWPHIGKTGTDERAPITGRTILHLARAHGWQEPIE 356
Query: 228 EWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTF 287
+ V V G+ + E A + D++ + + + KKR
Sbjct: 357 DDFEVAARVEAIAVGAPRAAEPAVEVRGGDAPLDDDEVIFVQSDPPAKPPRASKKKRDGD 416
Query: 288 --TSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWS 345
Y A R D + + +Y + +AWY VY
Sbjct: 417 DEPPKGYRARTEFGN---AERMLDRFGAGL---------MYVPELEAWYVW--TGVYWRR 462
Query: 346 LTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKST 405
+ + N + D +EE + + + +F ++ + +
Sbjct: 463 ----AVQVELENMAKDTIRALVDEAEELQTAEERIEFFKFC-------AACQKAAMVSNM 511
Query: 406 AQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP 465
+ + + LD + LG +G +DL TG + P KE IT T +
Sbjct: 512 IRLAASDPRVVVPVTELDKHTHLLGVGNGAVDLRTGALLPPGKEHRITVVTPVEYDPRAA 571
Query: 466 SQEFLDLVSGYFESE-EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524
+ F V F + E +++F R VG ALLG + I G G +GKST++ I+ A
Sbjct: 572 GKLFEQTVRDVFSDDAEQVEFFQRLVGYALLGTPREDLLIIPHGTGSNGKSTVLGKIREA 631
Query: 525 FGNQYVINAEASDIMQNRPPEAGKA---NPSLIRLMGSRIVIISETNENDEINAAKIKQM 581
G +A A + A L+RL G+R V + E +E E+ IK M
Sbjct: 632 LGAH-AKSASAETFLSASGGPGAAAGAAREDLLRLRGARFVYVGEPDEGSELREGLIKAM 690
Query: 582 TGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA---- 637
TGGD + AR + T E ++ F+ N V+ D A WRR +++PF++
Sbjct: 691 TGGDPIPARGLWSKTTIEVVPTWVAFMPTNHKPIVKGDDHAIWRRLMLVPFERNFDKDPT 750
Query: 638 -NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAW 696
+D + A++L + W ++G AY GL A++ + D W
Sbjct: 751 IKKDPARAERLAAEL-PGVLAWCVRGALAYQQHGLRPTS--SVAAARDAYKADMDLLADW 807
Query: 697 IDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKI 756
ID+ C +G + + L +S+ + EQ R ++R + + +GF I
Sbjct: 808 IDERCRVGRDAASTNEDLWRSWRAFAEQRGEL-RFIANSRALARRIAARGFSQIKNTYGI 866
Query: 757 EKEWKSKRIIKGLKLKP--AFESVD 779
R G+ + FE D
Sbjct: 867 R-----GRGFAGICVNDEVDFEGSD 886
Score = 61.7 bits (148), Expect = 5e-07, Method: Composition-based stats.
Identities = 32/166 (19%), Positives = 54/166 (32%), Gaps = 28/166 (16%)
Query: 115 KKKTTESTQGHLDIL---------GCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLL 165
+ T G +++ G G FV P K + P F+++D P
Sbjct: 175 RDGTKGIAAGQVEVFPKQNSVPSDGFGNMFVL----PLAGK----SVPLDSFELDDMP-- 224
Query: 166 SEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNG- 224
+ + VPLV + I + L +
Sbjct: 225 --KTFAAEMDWPSSAAVPLVA-----REEIVMPGTADVPVELELIKSALDMIPNAGVDEL 277
Query: 225 SHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYK-W 269
++ W VV +HH RGS G +A +S + S Y+ + + W
Sbjct: 278 DYEAWRDVVFGIHHAARGSDDGLALAHEFSARSSKYNPRFLDERVW 323
>gi|297564960|ref|YP_003683932.1| phage/plasmid primase, P4 family [Meiothermus silvanus DSM 9946]
gi|296849409|gb|ADH62424.1| phage/plasmid primase, P4 family [Meiothermus silvanus DSM 9946]
Length = 882
Score = 337 bits (865), Expect = 4e-90, Method: Composition-based stats.
Identities = 95/472 (20%), Positives = 185/472 (39%), Gaps = 36/472 (7%)
Query: 312 NKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSE 371
N + + + + W + W D + IM L + +
Sbjct: 445 NADRIVQHFGADLAHV-EGQGWLVWAGTH---WE-RSDAVALEIMQRLPQLVLQEALQAG 499
Query: 372 EPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGE 431
E + K+ K ++ +D R + NS + A + LD+ + L
Sbjct: 500 EAGETEKSQKLFKWAQKSD--RLSTVRNS-------VVMASWALRVREWELDARTDELPL 550
Query: 432 QDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVG 491
++G+L+LE+ K + T P+ + + E + Y + VG
Sbjct: 551 ENGVLNLESLTLGPHRKLAWHTHVLPHPYDPYAECPRWERFLEEVLPDENLRRYVQKAVG 610
Query: 492 MALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANP 551
+LLG N+ G G +GKS + ++ + FG Y A+ ++Q + +
Sbjct: 611 YSLLGDNREHVIFLCYGSGANGKSVFLEVLSWLFG-PYAHRADPELLLQR---NSDRHPT 666
Query: 552 SLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPN 611
+ + G R+V++ E + +A +K M+G + +TAR N + + ++ +I N
Sbjct: 667 EIAAMRGKRLVVMQEVDPEGIWRSALLKSMSGDNTLTARKIRENPITFT-VTWKVWIAAN 725
Query: 612 KHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISK 669
R+ +A+WRR +IPF+ I RD + KL + ++ W ++G++ Y +
Sbjct: 726 HLPRSRDHSEAFWRRIKLIPFNVTIPPERRDRTLPWKLR-EESVGLLAWAVQGLRMYYQE 784
Query: 670 GLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYD 729
GL PE +A R+ D ++ + C +G S +L +Y E+ +E
Sbjct: 785 GLQ--EPEAIAQANRAYREREDQVGRFLKERCQLG-GGRTASSALYAAYQEWALEEGE-- 839
Query: 730 RKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDN 781
+ +S + L+Q+G K G++L +S +
Sbjct: 840 -RMLSQKAFVAELEQRGLE--------RKRLAEGIFFLGMELPTERKSSTSD 882
>gi|308370271|ref|ZP_07420875.2| phage/plasmid primase, P4 family, C- domain protein [Mycobacterium
tuberculosis SUMu002]
gi|308378333|ref|ZP_07482245.2| phage/plasmid primase, P4 family, C- domain protein [Mycobacterium
tuberculosis SUMu009]
gi|308324799|gb|EFP13650.1| phage/plasmid primase, P4 family, C- domain protein [Mycobacterium
tuberculosis SUMu002]
gi|308352847|gb|EFP41698.1| phage/plasmid primase, P4 family, C- domain protein [Mycobacterium
tuberculosis SUMu009]
Length = 501
Score = 337 bits (863), Expect = 5e-90, Method: Composition-based stats.
Identities = 108/480 (22%), Positives = 177/480 (36%), Gaps = 51/480 (10%)
Query: 303 LASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSM 362
+A R ++ Y + + G ++ D + W D+ + A + L
Sbjct: 70 IAYRLAERYQDKLL--HVAGIGWHSWDGRRWAADDRGEAKR------AVLAELRQALSDS 121
Query: 363 KEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLL 422
D ++ + E S A F+ T L
Sbjct: 122 LNDKELRADV---------------------RKCESASGVAGVLDLAAALVPFAATVADL 160
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEV 482
DS L +G LDL T + ITK + S + ++ E V
Sbjct: 161 DSDPHLLNVANGTLDLHTLKLRPHAPADRITKICRGAYQSDTESPLWQAFLTRVLPDEGV 220
Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542
+ R G+ LLG + + GVG +GKS I+YA G+ Y AE M
Sbjct: 221 RGFVQRLAGVGLLGTVREHVLAILIGVGANGKSVFDKAIRYALGD-YACTAEPDLFMHRE 279
Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602
+ L G R V +SE+ ++ + + IK++TGGD + AR + +P
Sbjct: 280 ----NAHPTGEMDLRGVRWVAVSESEKDRRLAESTIKRLTGGDTIRARKMRQDFVEFTP- 334
Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFL 660
S TP ++ N V D A WRR V+PF+ I +D +L+ + W +
Sbjct: 335 SHTPLLITNHLPRVPGDDTAIWRRIRVVPFEVVIPADEQDRELDARLQLEA-DSILSWAV 393
Query: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDI-GENLWEESHSLAKSYS 719
G Y GL P+ L A R+ +DT + +IDD C L + L +++
Sbjct: 394 AGWSDYQRIGL--SQPDAVLAATSNYREDSDTIKRFIDDECVTSSPVLKATTTHLFEAWQ 451
Query: 720 EYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVD 779
+R QE IS + +L G+ + + + R G+ ++ A + D
Sbjct: 452 RWRVQEG---VPEISRKAFGQSLDTHGYP-------VTDKARDGRWRAGIAVRGADDFDD 501
>gi|170739471|ref|YP_001768126.1| hypothetical protein M446_1166 [Methylobacterium sp. 4-46]
gi|168193745|gb|ACA15692.1| phage/plasmid primase, P4 family [Methylobacterium sp. 4-46]
Length = 467
Score = 336 bits (862), Expect = 8e-90, Method: Composition-based stats.
Identities = 99/464 (21%), Positives = 163/464 (35%), Gaps = 49/464 (10%)
Query: 316 FSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPED 375
F+ +G Y D+K W IW K + + V +
Sbjct: 39 FAKQFEGFLRYNVDSKTWLHWTGT---IWETDKVK---RAFQYARELARRVAQEAP---- 88
Query: 376 NNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGI 435
+ R + + A + + + D LG G
Sbjct: 89 --------------GHLRVTHSKVAFAANVETFAKTDPRLVTVYEDWDLDPYLLGTPGGT 134
Query: 436 LDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESE-EVMDYFTRCVGMAL 494
+DL TG+ + IT++T + +FL + F + E + + + G L
Sbjct: 135 IDLRTGELRPALQSDMITRTTAVAPADTAECPQFLQFLDETFGGDTETVRFLQQWCGYCL 194
Query: 495 LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLI 554
G QRF+ G GG+GK L+ Y + + + +
Sbjct: 195 TGDTTEQRFVFGEGKGGNGKGVLIGTALGIL-KDYATVVAMEALTAAKH---DRHPTEIA 250
Query: 555 RLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHL 614
L G R+V SET E A+IK +TGGD + AR + + P F F++ N
Sbjct: 251 ALRGKRLVTASETEGGREWAEARIKALTGGDRIKARFMRQDEFEFLP-QFKLFVMGNNRP 309
Query: 615 FVRNPDDAWWRRYIVIPF--DKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLD 672
+RN D A RR IV+PF D P RD +KLE ++ +W + G + + L
Sbjct: 310 SLRNVDQAMRRRLIVVPFNNDVPKEKRDPDLPKKLEAEW-PGILRWMIDGCLDWQANRLI 368
Query: 673 VDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGEN---LWEESHSLAKSYSEYREQELNYD 729
P+ EE G D ++ + CD+ L S L ++ Y
Sbjct: 369 --SPKAVEDNTEEYFSGQDLLGQFLAEKCDLDPGNDRLTVGSTELYNAWKSYALVNGEEA 426
Query: 730 RKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773
+ + + + +GF + + R G++LKP
Sbjct: 427 E---AQKVFSPKIAGRGFP--------QIRGATGRGFSGIRLKP 459
>gi|332186933|ref|ZP_08388674.1| phage/plasmid primase, P4 family, C-terminal domain protein
[Sphingomonas sp. S17]
gi|332012943|gb|EGI55007.1| phage/plasmid primase, P4 family, C-terminal domain protein
[Sphingomonas sp. S17]
Length = 947
Score = 336 bits (861), Expect = 9e-90, Method: Composition-based stats.
Identities = 101/497 (20%), Positives = 176/497 (35%), Gaps = 60/497 (12%)
Query: 307 FSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKE-- 364
+D N F F + + W+ D + S DK+ + +
Sbjct: 416 LTDLGNAERFRARHGWRFRFCNELG-WFVWDGRRWELLSEEKDKVPGKVSLAVFDTVRAI 474
Query: 365 ----DVFDLSEEPEDNNKNSKSPRFWFNTDY----------------------RRQNVEE 398
D+ + S ED K++ D+ ++ E
Sbjct: 475 RNEADLVEASGRREDAPKDATDEEKAARLDHVVGWRGSGDNKLPIYYSETIRAHAKSSEG 534
Query: 399 NSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDL---------ETGQKV----- 444
S+ A +A +I +D +D+ + +G L L G+
Sbjct: 535 VSRLACIANIAKAFGEIAIKADAMDADRMAINVMNGTLRLTQEGKRWMARDGELKLISQS 594
Query: 445 --------KPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLG 496
I+K F F +S + + + + G++L G
Sbjct: 595 KEWGLVLTDHQPTDLISKIANVSFKPEASCPVFDGFLSTVQPDQAMRRFLGQWHGLSLTG 654
Query: 497 GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRL 556
Q+ G G +GKST+++ G+ A + + Q R + G+A P L RL
Sbjct: 655 DISEQKLAFYHGKGRNGKSTMVDACSEVAGDYGGSVAIETFLDQGRGRKGGEATPDLARL 714
Query: 557 MGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV 616
G R + SE + ++ A IK +TGG+ + AR +S P SF I N +
Sbjct: 715 PGIRFLRTSEPEKGAKLAEALIKLITGGELIDARHLNKGFFSFLP-SFKVTISGNHKPKI 773
Query: 617 RNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD 674
DD WRR +++P+D IA D +KL K W LKG+ + GL
Sbjct: 774 TGHDDGIWRRVMLVPWDVQIAKEDIDRHLPEKLR-KEKSGILNWMLKGLIDWRMNGL--V 830
Query: 675 IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIS 734
PE L A + R+ +D ++D+C E +S L ++ + + + +
Sbjct: 831 EPESVLAATAKYREQSDQLGRFLDECTKPVEGARSKSSVLFALFTAWAKATGAGEWQPQG 890
Query: 735 TRTVTLNLKQKGFIGGI 751
+ ++ +GF
Sbjct: 891 ---FSKAMEDRGFEKKT 904
Score = 43.2 bits (100), Expect = 0.20, Method: Composition-based stats.
Identities = 35/196 (17%), Positives = 56/196 (28%), Gaps = 38/196 (19%)
Query: 8 EQAKQAIHNGFKLIPLRLGDKRP-------------QRLGKWEEQLLSSEK----IDKLP 50
E A G+ + P KRP + G + ++ K P
Sbjct: 12 EAALDYARRGWPVFPCDPRTKRPYLAMDRDEEGKPIKGTGGVTKATTDEDQIRAWWRKWP 71
Query: 51 ACGFGFVCGVGEQPLYAFD------IDSKDEKTANTFKDTFEILHGTPIVRIGQK--PKI 102
G G + FD ID K ++ + T E L R+ + P+
Sbjct: 72 RAMIGVAVGRAGLIVIDFDPGVYDVIDRKTKEITGQEEWTLEQLKDALAERMEGEMLPET 131
Query: 103 LI--------PFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIH-----PKTKKEYT 149
L + T S H+D+ G G Y +A H +Y
Sbjct: 132 LTSVTRSGGEHQWFKMPAGEPIGNTGSLPNHIDVRGLGGYVIAPPSHFEGNDDDAPGDYR 191
Query: 150 WTTPPHRFKVEDTPLL 165
W ++ + P
Sbjct: 192 WLIDGDASRIAECPEA 207
>gi|15843066|ref|NP_338103.1| bacteriophage protein [Mycobacterium tuberculosis CDC1551]
gi|308376126|ref|ZP_07446144.2| phage/plasmid primase, P4 family, C- domain protein [Mycobacterium
tuberculosis SUMu007]
gi|308380119|ref|ZP_07669121.1| phage/plasmid primase, P4 family, C- domain protein [Mycobacterium
tuberculosis SUMu011]
gi|308400808|ref|ZP_07493275.2| phage/plasmid primase, P4 family, C- domain protein [Mycobacterium
tuberculosis SUMu012]
gi|13883410|gb|AAK47917.1| bacteriophage protein [Mycobacterium tuberculosis CDC1551]
gi|308344231|gb|EFP33082.1| phage/plasmid primase, P4 family, C- domain protein [Mycobacterium
tuberculosis SUMu007]
gi|308362562|gb|EFP51413.1| phage/plasmid primase, P4 family, C- domain protein [Mycobacterium
tuberculosis SUMu011]
gi|308366214|gb|EFP55065.1| phage/plasmid primase, P4 family, C- domain protein [Mycobacterium
tuberculosis SUMu012]
Length = 472
Score = 335 bits (860), Expect = 1e-89, Method: Composition-based stats.
Identities = 108/480 (22%), Positives = 177/480 (36%), Gaps = 51/480 (10%)
Query: 303 LASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSM 362
+A R ++ Y + + G ++ D + W D+ + A + L
Sbjct: 41 IAYRLAERYQDKLL--HVAGIGWHSWDGRRWAADDRGEAKR------AVLAELRQALSDS 92
Query: 363 KEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLL 422
D ++ + E S A F+ T L
Sbjct: 93 LNDKELRADV---------------------RKCESASGVAGVLDLAAALVPFAATVADL 131
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEV 482
DS L +G LDL T + ITK + S + ++ E V
Sbjct: 132 DSDPHLLNVANGTLDLHTLKLRPHAPADRITKICRGAYQSDTESPLWQAFLTRVLPDEGV 191
Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542
+ R G+ LLG + + GVG +GKS I+YA G+ Y AE M
Sbjct: 192 RGFVQRLAGVGLLGTVREHVLAILIGVGANGKSVFDKAIRYALGD-YACTAEPDLFMHRE 250
Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602
+ L G R V +SE+ ++ + + IK++TGGD + AR + +P
Sbjct: 251 ----NAHPTGEMDLRGVRWVAVSESEKDRRLAESTIKRLTGGDTIRARKMRQDFVEFTP- 305
Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFL 660
S TP ++ N V D A WRR V+PF+ I +D +L+ + W +
Sbjct: 306 SHTPLLITNHLPRVPGDDTAIWRRIRVVPFEVVIPADEQDRELDARLQLEA-DSILSWAV 364
Query: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDI-GENLWEESHSLAKSYS 719
G Y GL P+ L A R+ +DT + +IDD C L + L +++
Sbjct: 365 AGWSDYQRIGL--SQPDAVLAATSNYREDSDTIKRFIDDECVTSSPVLKATTTHLFEAWQ 422
Query: 720 EYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVD 779
+R QE IS + +L G+ + + + R G+ ++ A + D
Sbjct: 423 RWRVQEG---VPEISRKAFGQSLDTHGYP-------VTDKARDGRWRAGIAVRGADDFDD 472
>gi|15608720|ref|NP_216098.1| phiRv1 phage protein [Mycobacterium tuberculosis H37Rv]
gi|148661377|ref|YP_001282900.1| putative phiRv1 phage protein [Mycobacterium tuberculosis H37Ra]
gi|167966959|ref|ZP_02549236.1| bacteriophage protein [Mycobacterium tuberculosis H37Ra]
gi|215428058|ref|ZP_03425977.1| bacteriophage protein [Mycobacterium tuberculosis T92]
gi|215430474|ref|ZP_03428393.1| bacteriophage protein [Mycobacterium tuberculosis EAS054]
gi|260186531|ref|ZP_05764005.1| bacteriophage protein [Mycobacterium tuberculosis CPHL_A]
gi|260200642|ref|ZP_05768133.1| bacteriophage protein [Mycobacterium tuberculosis T46]
gi|289443035|ref|ZP_06432779.1| phi phage protein [Mycobacterium tuberculosis T46]
gi|289447191|ref|ZP_06436935.1| phiRv1 phage protein [Mycobacterium tuberculosis CPHL_A]
gi|289751280|ref|ZP_06510658.1| phiRv1 phage protein [Mycobacterium tuberculosis T92]
gi|289753669|ref|ZP_06513047.1| phiRv1 phage protein [Mycobacterium tuberculosis EAS054]
gi|306775768|ref|ZP_07414105.1| phage/plasmid primase, P4 family, C- domain protein [Mycobacterium
tuberculosis SUMu001]
gi|306805291|ref|ZP_07441959.1| phage/plasmid primase, P4 family, C- domain protein [Mycobacterium
tuberculosis SUMu008]
gi|306971876|ref|ZP_07484537.1| phage/plasmid primase, P4 family, C- domain protein [Mycobacterium
tuberculosis SUMu010]
gi|2117255|emb|CAB09087.1| Probable phiRv1 phage protein [Mycobacterium tuberculosis H37Rv]
gi|148505529|gb|ABQ73338.1| putative phiRv1 phage protein [Mycobacterium tuberculosis H37Ra]
gi|289415954|gb|EFD13194.1| phi phage protein [Mycobacterium tuberculosis T46]
gi|289420149|gb|EFD17350.1| phiRv1 phage protein [Mycobacterium tuberculosis CPHL_A]
gi|289691867|gb|EFD59296.1| phiRv1 phage protein [Mycobacterium tuberculosis T92]
gi|289694256|gb|EFD61685.1| phiRv1 phage protein [Mycobacterium tuberculosis EAS054]
gi|308215857|gb|EFO75256.1| phage/plasmid primase, P4 family, C- domain protein [Mycobacterium
tuberculosis SUMu001]
gi|308348162|gb|EFP37013.1| phage/plasmid primase, P4 family, C- domain protein [Mycobacterium
tuberculosis SUMu008]
gi|308358730|gb|EFP47581.1| phage/plasmid primase, P4 family, C- domain protein [Mycobacterium
tuberculosis SUMu010]
gi|323717855|gb|EGB27045.1| phiRv1 phage protein [Mycobacterium tuberculosis CDC1551A]
Length = 471
Score = 335 bits (860), Expect = 1e-89, Method: Composition-based stats.
Identities = 108/480 (22%), Positives = 177/480 (36%), Gaps = 51/480 (10%)
Query: 303 LASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSM 362
+A R ++ Y + + G ++ D + W D+ + A + L
Sbjct: 40 IAYRLAERYQDKLL--HVAGIGWHSWDGRRWAADDRGEAKR------AVLAELRQALSDS 91
Query: 363 KEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLL 422
D ++ + E S A F+ T L
Sbjct: 92 LNDKELRADV---------------------RKCESASGVAGVLDLAAALVPFAATVADL 130
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEV 482
DS L +G LDL T + ITK + S + ++ E V
Sbjct: 131 DSDPHLLNVANGTLDLHTLKLRPHAPADRITKICRGAYQSDTESPLWQAFLTRVLPDEGV 190
Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542
+ R G+ LLG + + GVG +GKS I+YA G+ Y AE M
Sbjct: 191 RGFVQRLAGVGLLGTVREHVLAILIGVGANGKSVFDKAIRYALGD-YACTAEPDLFMHRE 249
Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602
+ L G R V +SE+ ++ + + IK++TGGD + AR + +P
Sbjct: 250 ----NAHPTGEMDLRGVRWVAVSESEKDRRLAESTIKRLTGGDTIRARKMRQDFVEFTP- 304
Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFL 660
S TP ++ N V D A WRR V+PF+ I +D +L+ + W +
Sbjct: 305 SHTPLLITNHLPRVPGDDTAIWRRIRVVPFEVVIPADEQDRELDARLQLEA-DSILSWAV 363
Query: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDI-GENLWEESHSLAKSYS 719
G Y GL P+ L A R+ +DT + +IDD C L + L +++
Sbjct: 364 AGWSDYQRIGL--SQPDAVLAATSNYREDSDTIKRFIDDECVTSSPVLKATTTHLFEAWQ 421
Query: 720 EYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVD 779
+R QE IS + +L G+ + + + R G+ ++ A + D
Sbjct: 422 RWRVQEG---VPEISRKAFGQSLDTHGYP-------VTDKARDGRWRAGIAVRGADDFDD 471
>gi|31792768|ref|NP_855261.1| phiRv1 phage protein [Mycobacterium bovis AF2122/97]
gi|31618358|emb|CAD96276.1| Probable phiRv1 phage protein [Mycobacterium bovis AF2122/97]
Length = 471
Score = 334 bits (857), Expect = 3e-89, Method: Composition-based stats.
Identities = 108/480 (22%), Positives = 177/480 (36%), Gaps = 51/480 (10%)
Query: 303 LASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSM 362
+A R ++ Y + + G ++ D + W D+ + A + L
Sbjct: 40 IAYRLAERYQDKLL--HVAGIGWHSWDGRRWAADDRGEAKR------AVLAELRQALSDS 91
Query: 363 KEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLL 422
D ++ + E S A F+ T L
Sbjct: 92 LNDKELRADV---------------------RKCESASGVAGVLDLAAALVPFAATLADL 130
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEV 482
DS L +G LDL T + ITK + S + ++ E V
Sbjct: 131 DSDPHLLNVANGTLDLHTLKLRPHAPADRITKICRGAYQSDTESPLWQAFLTRVLPDEGV 190
Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542
+ R G+ LLG + + GVG +GKS I+YA G+ Y AE M
Sbjct: 191 RGFVQRLAGVGLLGTVREHVLAILIGVGANGKSVFDKAIRYALGD-YACTAEPDLFMHRE 249
Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602
+ L G R V +SE+ ++ + + IK++TGGD + AR + +P
Sbjct: 250 ----NAHPTGEMDLRGVRWVAVSESEKDRRLAESTIKRLTGGDTIRARKMRQDFVEFTP- 304
Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFL 660
S TP ++ N V D A WRR V+PF+ I +D +L+ + W +
Sbjct: 305 SHTPLLITNHLPRVPGDDTAIWRRIRVVPFEVVIPADEQDRELDARLQLEA-DSILSWAV 363
Query: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDI-GENLWEESHSLAKSYS 719
G Y GL P+ L A R+ +DT + +IDD C L + L +++
Sbjct: 364 AGWSDYQRIGL--SQPDAVLAATSNYREDSDTIKRFIDDECVTSSPVLKATTTHLFEAWQ 421
Query: 720 EYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVD 779
+R QE IS + +L G+ + + + R G+ ++ A + D
Sbjct: 422 RWRVQEG---VPEISRKAFGQSLDTHGYP-------VTDKARDGRWRAGIAVRGADDFDD 471
>gi|86604320|gb|ABD13938.1| predicted ATPase [Lactobacillus reuteri]
Length = 333
Score = 334 bits (856), Expect = 4e-89, Method: Composition-based stats.
Identities = 88/348 (25%), Positives = 148/348 (42%), Gaps = 24/348 (6%)
Query: 436 LDLETGQKVKPT--KELYITKSTG-TPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVG 491
+L+ G + + ITKST P +G + + ++ +F + +++Y VG
Sbjct: 1 FNLKKGMHGQQEIQADELITKSTSCVPGNQGA--SLWQEALTTFFCGDQALINYVQEIVG 58
Query: 492 MALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANP 551
+ +G + I G G +GKST N I G Y + A + P
Sbjct: 59 LVAIGQVYLEALIIAYGSGRNGKSTFWNTIANVLGT-YTGHLSADALTTGVRR---NVKP 114
Query: 552 SLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPN 611
+ + G R++I +E E +N + +KQ+ D + A Y +S +P S T + N
Sbjct: 115 EMAEVKGKRLIISAELEEGKRLNTSIVKQLCSTDEIYAEKKYMKPFSFTP-SHTIVLYTN 173
Query: 612 KHLFVRNPDDAWWRRYIVIPFDKPIANRD--ASFAQKLETKYTLEAKKWFLKGVKAYISK 669
V D+ WRR IVIPF IA R+ ++AQ+L K +W ++G + I +
Sbjct: 174 YLPHVGGNDEGIWRRLIVIPFKAKIAKRNDIKNYAQRLTEKAGPAVLQWIIEGAQRTIQQ 233
Query: 670 GLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYD 729
+ P KA D ++++ C++ + ++S L + Y EY + Y
Sbjct: 234 NYRLTTPAAVEKAVNAYHADNDWLGHFLNENCELDPSYEQKSGDLYQKYREYCQGIGEYI 293
Query: 730 RKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFES 777
R ST LK GF + ++ R IKGL+LK +
Sbjct: 294 R---STTDFYTALKNAGFQ--------RQHKQNGRFIKGLRLKVEADE 330
>gi|29366784|ref|NP_813724.1| gp9a [Streptomyces phage phiBT1]
gi|29243104|emb|CAD80132.1| gp9a [Streptomyces phage phiBT1]
Length = 808
Score = 333 bits (855), Expect = 5e-89, Method: Composition-based stats.
Identities = 86/471 (18%), Positives = 163/471 (34%), Gaps = 45/471 (9%)
Query: 308 SDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVF 367
SDA N + G Y ++ D +T K + + +M +
Sbjct: 366 SDAMNAHALVAWTDGRIKYAP-GLGYFVWDG-------VTWVKSATRVRQEIHAMGAALV 417
Query: 368 DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSR 427
PE ++ + L + + + D+
Sbjct: 418 LAGCLPESRG------------------FTMTTRIDALMTELRSVPSVHVDAGEFDAKPH 459
Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFES-EEVMDYF 486
L ++G++DL TG K +T S + + + + + F E+ +Y
Sbjct: 460 LLSFRNGVVDLRTGNIRAHDKNDMLTVSMPSDYDPTAKAPRWEQFLREIFPDHPELAEYM 519
Query: 487 TRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEA 546
R G + G Q F + G G +GKS F +
Sbjct: 520 QRLTGYGITGNTSEQCFAVLWGKGSNGKSVYTETCTDLFAPI-TKTTPFATFEDK--GNG 576
Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
G L L +R+V+ SE ++ A +K++TG D +TAR ++ +P F
Sbjct: 577 GGIPNDLAALRDARLVMASEGESGKPMSEAVLKRVTGKDKVTARFLRQEFFTFTP-KFLI 635
Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVK 664
+ N ++ D+ WRR +IPF + A RD +KL + W ++G
Sbjct: 636 LLATNHKPKFKSQDEGLWRRVKLIPFTRYFAPEERDYDLDRKLRAEA-AGIIAWAVRGAV 694
Query: 665 AYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWE-ESHSLAKSYSEYRE 723
+ + GL PE KA E R +D + + ++ +Y+++ E
Sbjct: 695 DWYANGLR--DPECISKATREYRATSDALAGFFPGVLEAADDTHVLPGADAYTAYTDWCE 752
Query: 724 QELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPA 774
E ++ S + ++++ ++K+ + G+K+ A
Sbjct: 753 AEGLQRKEVWSRKAFYGAMEER--------NVMKKKTNKGIALVGVKVADA 795
>gi|301057712|ref|ZP_07198785.1| phage/plasmid primase, P4 family, C-terminal domain protein [delta
proteobacterium NaphS2]
gi|300448173|gb|EFK11865.1| phage/plasmid primase, P4 family, C-terminal domain protein [delta
proteobacterium NaphS2]
Length = 489
Score = 332 bits (852), Expect = 1e-88, Method: Composition-based stats.
Identities = 96/506 (18%), Positives = 183/506 (36%), Gaps = 41/506 (8%)
Query: 286 TFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWS 345
T +L + A+ D +F + + FL+ + W + + W
Sbjct: 2 TPEKKEKTRSQLEEFCIHAAELGD---GILFGLLHENRFLFNETSGEWLVY---SGHKWE 55
Query: 346 LTLDKITASIMNFLVSMK-EDVFDLSEEPEDNNK--------NSKSPRFWFNTDYRRQNV 396
L L + ++ DL+ + K K+ + N ++
Sbjct: 56 LDLTGEAQKAVEYIAVWYSNRASDLAARIDRGEKDGDKTKIEQLKAEQRLCNKKAKKLRT 115
Query: 397 EENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKST 456
+ +A ++ D LD L DG++DLETG+ + IT +
Sbjct: 116 QRGRQACLHLAHTNYERPLQVSGDALDLHPMRLACTDGVIDLETGELRPGRPQDLITLGS 175
Query: 457 GTPFVEG-EPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKS 515
T + + F ++ + EV ++ R G G + + G G +GK+
Sbjct: 176 PTNWHGLHASAPNFERTINEIVDDPEVSEFLQRFFGYCCTGLVTESALVVLEGQGRNGKT 235
Query: 516 TLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA 575
L+ + + G + Q R A PSL+ L G R SE EN ++
Sbjct: 236 LLVETLAHVLGPLAGSIPSEMLLDQGRFTNADSPTPSLMSLRGLRCAFASEVEENRRFSS 295
Query: 576 AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP 635
+++K ++G D + R + + + ++ N+ D A+W R ++PF
Sbjct: 296 SRVKWLSGSDSLVGRFPHDRRPTRFRPTHKLILLINERPNAPMNDYAFWERLHMVPFPFS 355
Query: 636 IANR----------DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEE 685
+ D S A+KL+ + W ++G + +GL PE K EE
Sbjct: 356 FVDHEPKAANERRADKSLAEKLK-EEAPGILAWLVRGCLKWQKQGLSP--PEKIRKNTEE 412
Query: 686 ERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK 745
++ D + ++D+ C + E S L ++ + N RK +S + + +K
Sbjct: 413 YKRSEDLLETFLDEHCILDPKEEEASADLYDAFKSW--WSENVSRKTLSQKKFGRLMGRK 470
Query: 746 GFIGGIKREKIEKEWKSKRIIKGLKL 771
E++ + GL+L
Sbjct: 471 ----------FERKKTNTIKYVGLRL 486
>gi|46578606|ref|YP_009414.1| P4 family phage/plasmid primase [Desulfovibrio vulgaris str.
Hildenborough]
gi|46448017|gb|AAS94673.1| phage-plasmid primase, P4 family [Desulfovibrio vulgaris str.
Hildenborough]
Length = 561
Score = 331 bits (849), Expect = 3e-88, Method: Composition-based stats.
Identities = 100/506 (19%), Positives = 197/506 (38%), Gaps = 42/506 (8%)
Query: 295 GKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTL-DKITA 353
I K L A+R DA +F+ +G F+Y K W + + + W + + A
Sbjct: 54 DDFILKCLKANRVGDAM---LFNALHRGKFVYV---KRWGRFIRWAGHHWEEDIMETSQA 107
Query: 354 SIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNV---EENSKAKSTAQSLE 410
++ + V LS++ +D + K+ + ++ + + + +
Sbjct: 108 AVEAVCEAYLRAVSSLSKQADDAVGDEKALLERKREELLKRVSFLRAPSGREQLLRCTHT 167
Query: 411 AGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVE-GEPSQEF 469
+IT D LD L ++G++DL TG+ + Y+ + + P +F
Sbjct: 168 IADPLAITGDELDQQPFLLACRNGVIDLRTGEFRPGHPDDYVLNACPIEWPGIDAPCPQF 227
Query: 470 LDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGV-GGSGKSTLMNLIKYAFGNQ 528
+ E+E ++ + R G ++G + G G +GK TL+ ++ G+
Sbjct: 228 ERFMYSCHENEAIVSFLQRVFGYGIMGARDDHYWFVFYGARGRNGKDTLLKILTAILGDD 287
Query: 529 YVINAEASDIMQ-NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCM 587
+ + ++ +P + +P ++ L G R+ +E + + +KIK +TGG +
Sbjct: 288 LASTIDTALLLDTKQPRSSAGPSPDVLALRGKRMAFATEAEDGQKFAMSKIKWLTGGSNL 347
Query: 588 TARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--------- 638
AR Y+ + F++ N+ + DDA+W R + +P+ +
Sbjct: 348 MARGLQDKLYTTWKQTHLLFLLTNEIPRAKADDDAFWTRTLAVPWKLRFVDHPTTPDERP 407
Query: 639 RDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID 698
RD KL K W ++G Y GL+ PE L E R+ D ++
Sbjct: 408 RDPQMEHKLM-KELPGILAWLVRGCLEYQRVGLNP--PEEVLACTRERRRAFDDVGRFLT 464
Query: 699 DCCD-------IGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGI 751
+CC+ I + L +++ + + ++ S R + L +KG
Sbjct: 465 ECCEIEQVVEGIEPATRTSATVLLNAFNWWLHKNVDSS-YSYSARRLGDILAKKG----- 518
Query: 752 KREKIEKEWKSKRIIKGLKLKPAFES 777
I K+ + G+ L P E
Sbjct: 519 ----IPKKKSGGMVYLGVSLLPEVED 540
>gi|46581285|ref|YP_012093.1| P4 family phage/plasmid primase [Desulfovibrio vulgaris str.
Hildenborough]
gi|46450706|gb|AAS97353.1| phage-plasmid primase, P4 family [Desulfovibrio vulgaris str.
Hildenborough]
gi|311234949|gb|ADP87803.1| phage/plasmid primase, P4 family [Desulfovibrio vulgaris RCH1]
Length = 561
Score = 331 bits (848), Expect = 3e-88, Method: Composition-based stats.
Identities = 100/506 (19%), Positives = 197/506 (38%), Gaps = 42/506 (8%)
Query: 295 GKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTL-DKITA 353
I K L A+R DA +F+ +G F+Y K W + + + W + + A
Sbjct: 54 DDFILKCLKANRVGDAM---LFNALNRGKFVYV---KRWGRFIRWAGHHWEEDIMETSQA 107
Query: 354 SIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNV---EENSKAKSTAQSLE 410
++ + V LS++ +D + K+ + ++ + + + +
Sbjct: 108 AVEAVCEAYLRAVSSLSKQADDAVGDEKALLERKREELLKRVSFLRAPSGREQLLRCTHT 167
Query: 411 AGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVE-GEPSQEF 469
+IT D LD L ++G++DL TG+ + Y+ + + P +F
Sbjct: 168 IADPLAITGDELDQQPFLLACRNGVIDLRTGEFRPGHPDDYVLNACPIEWAGIDAPCPQF 227
Query: 470 LDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGV-GGSGKSTLMNLIKYAFGNQ 528
+ E+E ++ + R G ++G + G G +GK TL+ ++ G+
Sbjct: 228 ERFMYSCHENEAIVSFLQRVFGYGIMGARDDHYWFVFYGARGRNGKDTLLKILTAILGDD 287
Query: 529 YVINAEASDIMQ-NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCM 587
+ + ++ +P + +P ++ L G R+ +E + + +KIK +TGG +
Sbjct: 288 LASTIDTALLLDTKQPRSSAGPSPDVLALRGKRMAFATEAEDGQKFAMSKIKWLTGGSNL 347
Query: 588 TARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--------- 638
AR Y+ + F++ N+ + DDA+W R + +P+ +
Sbjct: 348 MARGLQDKLYTTWKQTHLLFLLTNEIPRAKADDDAFWTRTLAVPWKLRFVDHPTTPDERP 407
Query: 639 RDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID 698
RD KL K W ++G Y GL+ PE L E R+ D ++
Sbjct: 408 RDPQMEHKLM-KELPGILAWLVRGCLEYQRVGLNP--PEEVLACTRERRRAFDDVGRFLT 464
Query: 699 DCCD-------IGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGI 751
+CC+ I + L +++ + + ++ S R + L +KG
Sbjct: 465 ECCEIEQVVEGIEPATRTSATVLLNAFNWWLHKNVDSS-YSYSARRLGDILAKKG----- 518
Query: 752 KREKIEKEWKSKRIIKGLKLKPAFES 777
I K+ + G+ L P E
Sbjct: 519 ----IPKKKSGGMVYLGVSLLPEVED 540
>gi|119383734|ref|YP_914790.1| P4 family phage/plasmid primase [Paracoccus denitrificans PD1222]
gi|119373501|gb|ABL69094.1| phage/plasmid primase, P4 family [Paracoccus denitrificans PD1222]
Length = 612
Score = 330 bits (845), Expect = 7e-88, Method: Composition-based stats.
Identities = 103/569 (18%), Positives = 197/569 (34%), Gaps = 73/569 (12%)
Query: 270 DTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTAD 329
+ + E +S T +D N ++ + + +Y
Sbjct: 27 EGMEPEASAGDGDSQSPGTPSEGQADDPFSDCAQYP-LNDHGNGQRYARHYRDELIYVPR 85
Query: 330 TKAWYKKDKNNVYIWSLTLD----------------------KITASIMNFLVSMKE--- 364
Y W D ++ M L +
Sbjct: 86 ----YGWHVWTGQRWQKDEDGIEVRRRAQMLGELISREIPHLRLEDWQMQILEDGVQLRR 141
Query: 365 ---------DVFDLSEEPEDNNKNSKSPRFW-----------FNTDYRRQNVEENSKAKS 404
E +S +P+ D+ + +
Sbjct: 142 RERELGRIVSAGGEEAEAAQQELDSMAPKLARLSGVEKVLLSVRKDHHGWAKTSGNTTRI 201
Query: 405 TAQSLEAGSIFSITSDLLDSSSRFLGEQDGIL-------DLETG-------QKVKPTKEL 450
A EAG +++ + L+++ + ++G++ D E+G Q V ++
Sbjct: 202 DASIKEAGVGLAVSFERLNAAPLDVCCENGVMRFSVIPGDPESGMSPMADMQFVPHARDQ 261
Query: 451 YITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVG 510
ITK + F ++ EV + R + Q+ + G+G
Sbjct: 262 LITKMMPVRYDPEAKRPIFDRFITRILPDPEVRRFVQRWFALNTTALTGEQKLVFFYGLG 321
Query: 511 GSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN 570
+GKS L++LI FG+ Y A + + + A P L+ LM +R+V SE E
Sbjct: 322 ANGKSVLVDLIARMFGD-YAATARIETLTGSTKKDGSAATPDLVPLMLARMVRTSEPEEG 380
Query: 571 DEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVI 630
+++ IKQ+TGG+ + R N+G +P F I N VR DD WRR +++
Sbjct: 381 EKLREGLIKQLTGGEPINVRPNFGEQIEVTP-KFKITIQGNYRPEVRGRDDGIWRRLLIV 439
Query: 631 PFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQ 688
PFD I RD KL + + W ++G+ Y+ GL P L A E R+
Sbjct: 440 PFDVTIPPKERDPDLGAKLWEERS-GILNWLIEGLIDYLEGGLQ--EPPAVLSATNEYRE 496
Query: 689 GTDTYQAWIDDCCDIG--ENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746
+D +++ CCD+ E L +++ +++++ + + + + ++
Sbjct: 497 ESDPLGFFLESCCDVSGQPEDSETVKDLVQAFQFWQDEQGGAVWQPGTVQRQLKDKMRRW 556
Query: 747 FIGGIKREKIEKEWKSKRIIKGLKLKPAF 775
++ E++ G++ F
Sbjct: 557 VSPSTGKKFAERKSNGIMRYDGIRFSIEF 585
>gi|212702855|ref|ZP_03310983.1| hypothetical protein DESPIG_00887 [Desulfovibrio piger ATCC 29098]
gi|212673717|gb|EEB34200.1| hypothetical protein DESPIG_00887 [Desulfovibrio piger ATCC 29098]
Length = 542
Score = 329 bits (844), Expect = 9e-88, Method: Composition-based stats.
Identities = 96/532 (18%), Positives = 192/532 (36%), Gaps = 61/532 (11%)
Query: 283 KRSTFTSLFYHHGKLIPK------GLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKK 336
+ S HG IPK L A+ D +FS KG Y W
Sbjct: 21 QPSNDGPKLDKHGLPIPKPDFVERCLYANELGD---GLLFSYLFKGRHAYVGQADEWIWW 77
Query: 337 DKNNVYIWSLTLDKITASIMNFLVSMKEDVFD-------LSEEPEDNNKNSKSPRFWFNT 389
+ + WS+ L + + + + + L+++ E + + R
Sbjct: 78 ---SGHHWSVDLIEKGHRARADVEHVAQAYYTTGAHFDRLAKDAERDGDKESAGRLKAKA 134
Query: 390 DYRRQNVEEN---SKAKSTAQSLEA--GSIFSITSDLLDSSSRFLGEQDGILDLETGQKV 444
+ + + K + + S +I D +D L +G++DL TG+
Sbjct: 135 EKMKARAARLRTETGRKRCLEFAKTNLESPLAIAGDEIDRDPWSLPMANGVVDLRTGEIR 194
Query: 445 KPTKELYITKSTGTPFVE-GEPSQEFLDLVSGYFESE-EVMDYFTRCVGMALLGGNKAQR 502
+ ++ KS+ + P + V+ + E+ + R G + G +
Sbjct: 195 PGRPDDWLVKSSPVEWQGIDAPCPHWEHFVTEIMGDDPEMAAFLQRVFGYGVTGLAREHI 254
Query: 503 FIHIRGVGGSGKSTLMNLIKYAFGNQYVINA------EASDIMQNRPPEAGKANPSLIRL 556
F+ + G G +GK + +I+ G Q A + Q + A +P ++ L
Sbjct: 255 FLVLLGRGRNGKGIMTEVIQTVLGGQNATTALAGPVQSEMLLDQGKNRSAAGPSPDIMSL 314
Query: 557 MGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV 616
G RI SET+E + A++K +GG+ +T R + + ++ N
Sbjct: 315 RGLRIAFASETDEGQRFSPARVKWFSGGETLTGRYPHDKRNVSFAPTHLLALLTNHKPHA 374
Query: 617 RNPDDAWWRRYIVIPFDKPIANR----------DASFAQKLETKYTLEAKKWFLKGVKAY 666
D A+W R +++ F +R D +L + W ++G +
Sbjct: 375 PASDFAFWERLLLVDFPLSFVDRKPQNENERPMDKGLKDRLLQEL-PGIAAWLVRGCLEW 433
Query: 667 ISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDI----GENLWEESHSLAKSYSEYR 722
G + P +A E R+ D ++D+CCD+ + ++ L ++ +
Sbjct: 434 QRVG--IAPPAKVREATSEYRRDEDLLADFVDECCDLQQEGQPEIRSKASDLYDAFCAWF 491
Query: 723 EQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIK-GLKLKP 773
++ ++ +K IS + + E+ ++E K G+ + P
Sbjct: 492 KRNVS-AKKTISQKAFGKMM----------LERFQRERKGGTYYYFGVSVSP 532
>gi|148555111|ref|YP_001262693.1| P4 family phage/plasmid primase [Sphingomonas wittichii RW1]
gi|148500301|gb|ABQ68555.1| phage/plasmid primase, P4 family [Sphingomonas wittichii RW1]
Length = 955
Score = 328 bits (842), Expect = 2e-87, Method: Composition-based stats.
Identities = 148/884 (16%), Positives = 267/884 (30%), Gaps = 146/884 (16%)
Query: 2 PVMQWKEQAKQAIHNGFKLIPLRLGDKRP-----------------QRLGKWEEQLLSSE 44
+ + A G+ + P +KRP +
Sbjct: 27 SGNIFLDAALGYAARGWPVFPCNPKNKRPLLGKDRDAQGNAIPGTGGLKKASTDPETIRG 86
Query: 45 KIDKLPACGFGFVCGVGEQPLYAFDID------------SKDEKTANTFKDTFEILHGTP 92
K P G + GV L+ D D D T + T E L
Sbjct: 87 WWRKWPKAMIGLLTGV--NGLFVVDFDPGIETDPKTGEPIMDPVTGEPIEYTLEGLKAVL 144
Query: 93 IVRIGQKPKILIPFRMNKEG------IKKKKTTESTQG-----HLDILGCGQYFVAYNIH 141
+IG + R +G + + + +D+ G G Y +A
Sbjct: 145 CFQIGGPLPASLAVRTAGKGGVHVYFRQPDEGADIRNRNNLPHRIDVRGTGGYVIAPPSV 204
Query: 142 PKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSI--------IP 193
T +EY W + + P + + V S
Sbjct: 205 MDTGREYRWLHGDADVEPVEAPAALVDILRKPKGSAPSENVGANAPASSRPTVAVDRPTS 264
Query: 194 SKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPV-VMAVHHETRGSSKGKEI--- 249
R+Y + + NG+ + + +A+ H + +E+
Sbjct: 265 EADAEEQALRRYGLAALDREVEKARTAP-NGTRNNTLNACGLALGHLVGAGALSRELAIS 323
Query: 250 -----ARRWSKQGSTYD------------------------------------------- 261
AR W + D
Sbjct: 324 ALVDVARAWRDIDKSTDTITRAVDDGAADPRELAHVRADARDRFRRFAGRRRDNPSAASG 383
Query: 262 ------EENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAM 315
E++F + D + G +RST + +L K +R +D N
Sbjct: 384 LRAAEIEQSFQSGSEANDGDAAGVETGRRSTASQRARAARELHGKLARYNR-TDLGNAER 442
Query: 316 FSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKED---------- 365
+ F Y+ W+ D+ + S +K+ ++ + M
Sbjct: 443 WRDRFGDDFRYSPALG-WFAWDRKRWKLLSAEANKVPGEVLASVFKMVRAIRREAWVVRA 501
Query: 366 --VFDLSEEPEDNNKNSKSPRFWFNTDYRRQNV---EENSKAKSTAQSLEAGSIFSITSD 420
V DL + P ++ + A+ T + A +I D
Sbjct: 502 SGVPDLEKNPGGLDRTVFDEKGKAKRLSAALFAWADTSEGNARLTCVAKLAMPFITIEPD 561
Query: 421 LLDSSSRFLGEQDGILDLE-----TG------QKVKPTKELYITKSTGTPFVEGEPSQEF 469
D Q+G L G + + + +TK + F S +
Sbjct: 562 AFDRDLYAFNVQNGTLRFRRERRPDGSWRVMMKLMDHDRRDLLTKISPVTFDPEAKSPVY 621
Query: 470 LDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529
L+ + Y + G++L G Q+ G GG+GK T++N + G+ +
Sbjct: 622 DGLLEWAQPDPAMRRYLHQWGGLSLTGETGEQKLHFWHGGGGNGKGTVLNAWCHVAGDYF 681
Query: 530 VINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTA 589
+ + + Q KA P L +L G R++ +SE E ++ A IK +TG D ++
Sbjct: 682 ASVSIETFLDQGPKKSGDKATPDLAKLPGVRLLRVSEPEERAQLAEALIKLVTGQDPLSV 741
Query: 590 RLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKL 647
R + + P F I+ N L +R D WRR +IP+D I A++D + +L
Sbjct: 742 RHLHKGFFEFLP-HFKLTIMGNHWLGIRGTDKGIWRRVKLIPWDASIDDADKDETLPDQL 800
Query: 648 ETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENL 707
+ + + +KG+ ++ GL P +A R+ +D ++ C +
Sbjct: 801 KAEAS-GILNHMIKGLLDWMRNGLI--EPRSVTQATAAYREASDPLGRFLALCVRPAQGK 857
Query: 708 WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGI 751
+S L Y + +T L KG+
Sbjct: 858 RVQSSRLHAVYEAWCAAA---SEPTWKNKTFAQALLDKGYKKKP 898
>gi|88602291|ref|YP_502469.1| Phage/plasmid primase P4-like protein [Methanospirillum hungatei
JF-1]
gi|88187753|gb|ABD40750.1| Phage/plasmid primase P4-like protein [Methanospirillum hungatei
JF-1]
Length = 723
Score = 328 bits (840), Expect = 3e-87, Method: Composition-based stats.
Identities = 131/781 (16%), Positives = 266/781 (34%), Gaps = 103/781 (13%)
Query: 13 AIHNGFKLIPLRLGDKRPQRLGKWEEQ---LLSSEKIDKLPACGFGFVCGVGEQPLYAFD 69
A+ + ++IP++ G K+P KW+ + L I G + G+ Q D
Sbjct: 23 ALGDNIRVIPVKPGIKKPIG-DKWQNENNHPLDYRGIHYWFKNGNNY--GIIPQG----D 75
Query: 70 IDSKDEKTANTFKDTFEILHGTPIVRIGQKP---------------KILIPFRMNKEGIK 114
+ D + + + + VR P K +I + +
Sbjct: 76 LVILDADEPEKLGEVIDYIGDSLTVR---TPSGGYHIYFYCAELGTKKIILYEFEENHDG 132
Query: 115 KKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLF 174
K+K + + GC + V K Y ++ D D + +
Sbjct: 133 KRKKGLHL-AEIYMAGCRGFVVGAGSRTD-KGVYRVVNASAPRRLPD-----PGDFKRII 185
Query: 175 KFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVM 234
+ F++ + D S ++ ++ + Y N E + +G + + +
Sbjct: 186 RPFRD---DIKYDDGSHKQNQKERDSIPKLYKN-----------EVYQDGERNNALISLA 231
Query: 235 AVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHH 294
T + + E+ R S + D D + I +A +
Sbjct: 232 GRLVGTGITDES-ELFRMLSDANNN----RCIPTLDEADVQRIARSALRYEPNQRRP--- 283
Query: 295 GKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITAS 354
+D N F + + W+ D ++W +
Sbjct: 284 ------------LTDLGNGERFFDMHGETTKFIPAWQKWFIWDG---HLWR---EDRKQE 325
Query: 355 IMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSI 414
I ++ + + E+++ K + + E SK ++ S A ++
Sbjct: 326 IRKLANKTVRSLYVEASKIEEDDLRKKLVSWA-------RASESASKIQALLTS--AAAL 376
Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVS 474
+ + D+ ++G +L + + + +TK + + +
Sbjct: 377 VADVPESFDNKPDLFNLKNGTYNLHSHEFRDHLQADMLTKCGNFSYEPNASCPVWEKHIQ 436
Query: 475 GYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
F + ++ F G + L GN + F+ G G +GK ++L+K+ G+ Y A
Sbjct: 437 TIFLNDQSLIGSFQELCGYSFLSGNPDEIFVICHGSGRNGKGKTLDLLKHLHGD-YAKTA 495
Query: 534 EASDIMQ-NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLN 592
+ + + +P L RL SR+VI SET ++ + IK+++G D ++AR
Sbjct: 496 DFKTFLTPSYTNSGSNPSPDLARLYRSRLVIASETGNGSVLDESIIKRLSGNDTISARFL 555
Query: 593 YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETK 650
+ +P F F+ N + D A R ++PF+ +RD K + +
Sbjct: 556 RQEIFEYTP-EFVIFLQMNPIPRFNDWDKAIENRLWLVPFNHYFEPKDRDPDILDKFKAE 614
Query: 651 YTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEE 710
+ W ++G+K Y + G + A E R+ D+ +I+DCC +
Sbjct: 615 -SAGIFCWCMEGLKRYQALG-RLTRAAAIETACESVRKENDSISCFIEDCCTLS--GKIS 670
Query: 711 SHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLK 770
L Y+ + D R T L +K K + R ++G+
Sbjct: 671 RKDLYNHYAVWC---GGVDMCPEVPRKFTSALLKK------HGVKDGVKSNGVRYLQGIS 721
Query: 771 L 771
+
Sbjct: 722 I 722
>gi|170751547|ref|YP_001757807.1| P4 family phage/plasmid primase [Methylobacterium radiotolerans JCM
2831]
gi|170658069|gb|ACB27124.1| phage/plasmid primase, P4 family [Methylobacterium radiotolerans
JCM 2831]
Length = 472
Score = 327 bits (839), Expect = 3e-87, Method: Composition-based stats.
Identities = 93/473 (19%), Positives = 176/473 (37%), Gaps = 41/473 (8%)
Query: 305 SRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKE 364
++ + F+ + G L+ DT W+ W + +
Sbjct: 29 DLLTEDWAARTFAERRVGDLLFCHDTGKWHTWTG---AAWRP---NRCGLAFQWARELAR 82
Query: 365 DVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDS 424
++ + E R + + A + + +F++T + D+
Sbjct: 83 EMCENEEPK------------------TRFIASKTAFAAGVERFSRSDPVFAVTIEGWDA 124
Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEE-VM 483
LG G +DL TG+ + + ITK T E +L + + + +
Sbjct: 125 DPWLLGTPGGTVDLRTGKLREADRADRITKLTAVAPAETPECPTWLKFLDDVTQGDAGYI 184
Query: 484 DYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP 543
+ + G L G Q G GG+GK L++++ + Y +NA +
Sbjct: 185 RFLQQWAGYCLTGDTSEQALCFAYGGGGNGKGVLIHVLAGILAD-YAVNAAMETFTAAKH 243
Query: 544 PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPAS 603
+ + L G+R+V SET + + A+IKQ+TGGD M AR + + +P
Sbjct: 244 ---DRHPTEIAALRGARLVTASETEQGRQWAEARIKQLTGGDTMRARYMRQDEFEFTPV- 299
Query: 604 FTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGV 663
I+ N + + DDA RR+ ++PF A D +KL ++ +W ++G
Sbjct: 300 LKLLIIGNNKPGLSSVDDAARRRFNLLPFLFKPAVPDPQLEEKLRKEWPQ-ILRWMIEGC 358
Query: 664 KAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENL---WEESHSLAKSYSE 720
+ + L PEV A +E + DT+ W+D C + + + L S+++
Sbjct: 359 LDWQAHRLVR--PEVVKDATDEYFEQQDTFGQWLDARCIVDKGNPYRKATTQELFASWAD 416
Query: 721 YREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773
+ S L + GF + R +G++++P
Sbjct: 417 FARGSNELVGTMHS---FGDRLDKLGFKK--NKNVPTGVNGRARGYEGIEVRP 464
>gi|147919628|ref|YP_686631.1| phage-like protein [uncultured methanogenic archaeon RC-I]
gi|110622027|emb|CAJ37305.1| hypothetical phage-like protein [uncultured methanogenic archaeon
RC-I]
Length = 867
Score = 327 bits (839), Expect = 4e-87, Method: Composition-based stats.
Identities = 148/816 (18%), Positives = 271/816 (33%), Gaps = 74/816 (9%)
Query: 14 IHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEK----IDKLPACGFGFVCGVGEQPLYAFD 69
+H G +IPL G K P W+ + +K P G + G ++ FD
Sbjct: 68 VHRGASVIPLIPGKKIP--YCTWDWSVSEGSGVFYLWEKFPYALIGVMTGKSGYIVWDFD 125
Query: 70 IDSKDEKTANTFKDTFEILHGTPIV--RIGQ----------KPKILIPFRMNKEGIKKKK 117
+T N + L + I R G K + M K KK
Sbjct: 126 KKHGGLETYNLMCQLYPELKESYIEETRSGGLHVYFTCGDLTVKKGVDIFMKKLADGKKV 185
Query: 118 TTESTQG--HLDILGCGQYFVAYNIHPKTKKEYTW----TTPPHRFKVEDTPLLSEEDVE 171
+ + +DI G VA K EY P + D L+ ++
Sbjct: 186 PKWADKNWPGVDICANGSIAVAAP-SVDVKGEYKVLNNKPIQPISQGLIDLLRLTGRVMD 244
Query: 172 YLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWI- 230
E K + IP++ + Q+ I + E + +
Sbjct: 245 AEAFEKAEADPAYSKVEAQPIPNRYYK----EQFAPICIKGIVDSLKEGKADNDSMFALA 300
Query: 231 PVVMAVHHETRGSSKGKEIARRWSKQGST----------YDEENFNYKWDTFDFEEIGDT 280
+M ++ E ++ ++ + + Y +
Sbjct: 301 CYLMGLNLENEAILSVYSVSPKFDRGLTEHYLNYYRRMGYKCQTCVTMQANGLCTGGAGC 360
Query: 281 AKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNN 340
K +S + Y + + + + M + Y T+ WY + N
Sbjct: 361 NKVKSPAWN--YRNTYYVENWPYDNAKDEKGVADMLADLYGDDIRYVRGTEKWYTWNGEN 418
Query: 341 VYIWSLTLDK---------ITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDY 391
W +D+ + +M+ L+ + ++E + +
Sbjct: 419 ---WPEDVDEAHLSRMITCMADLVMDRLLFLSSLTKTITEGEARKAHKAHIENLYRQFHK 475
Query: 392 RRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP---TK 448
R S K + ++E SI + D LD + +G +L+T + + TK
Sbjct: 476 MRTVGNIKSMIKMASMTIE--SIILDSVDELDKDKHLINLLNGAFNLDTSEFIPHGERTK 533
Query: 449 ELYITKSTGTPFVEGEPSQEFLDLVSGY-FESEEVMDYFTRCVGMALLGGNKAQRFIHIR 507
+T + F + +++ DY R +G AL G ++F
Sbjct: 534 PYLMTLRANVAYNPEAKRPRFDKFIDEITCGDKDLADYLQRSLGYALSGYTGEEKFFAWF 593
Query: 508 GVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISET 567
G G +GKS L I Y G+ Y +A A+ + P + S RL G R + SE
Sbjct: 594 GNGRNGKSKLAEAILYLMGD-YASSANATAFIM--PKNGNIRSFSFARLRGKRFIRCSEV 650
Query: 568 NENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627
EN N +IK+ D +TA +G + P F + N + D + ++
Sbjct: 651 PENSVWNDVRIKEFLS-DTITAEEKFGAEFDYKPQG-KLFFLCNHLPAMP-KDRSTETKF 707
Query: 628 IVIPFDKPIANR--DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEE 685
V+PFD + D + L+ + W ++G + + + L I + +A +
Sbjct: 708 FVVPFDLQLEPHQVDMGIEEALKAEAE-GILLWMIEGYQKWKANDLR-RISQAVKEASDR 765
Query: 686 ERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK 745
+ D + A++ D C I + ++ L ++ ++E+ S L
Sbjct: 766 YWRDADWFAAFLSDMCVIDPSAEVDAGELYTTFKSWQER---VGAPIQSATAFGKRLTSS 822
Query: 746 GFIGGIKREKIEKEWKSKRIIK-GLKLKPAFESVDD 780
GF + K ++ GLKLK A + +D
Sbjct: 823 GFKSRESKRTDRDGRKRTVNLRIGLKLKIAIATCED 858
>gi|159039260|ref|YP_001538513.1| P4 family phage/plasmid primase [Salinispora arenicola CNS-205]
gi|159039311|ref|YP_001538564.1| P4 family phage/plasmid primase [Salinispora arenicola CNS-205]
gi|157918095|gb|ABV99522.1| phage/plasmid primase, P4 family [Salinispora arenicola CNS-205]
gi|157918146|gb|ABV99573.1| phage/plasmid primase, P4 family [Salinispora arenicola CNS-205]
Length = 874
Score = 326 bits (836), Expect = 8e-87, Method: Composition-based stats.
Identities = 96/484 (19%), Positives = 184/484 (38%), Gaps = 45/484 (9%)
Query: 308 SDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVF 367
++A Y W D + + W + +E +
Sbjct: 426 TEAGMARALVANHGEVLRYCPQRARWLMWD-GHRWTW------------DDAEQHRELLL 472
Query: 368 DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSR 427
L++ ++ + + R+ + A+ + D LD+++
Sbjct: 473 ALADRIPNDKEWAT----------FRKRAMSAAGVTGIARLAQHNPHVVAHFDDLDANAW 522
Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFES-EEVMDYF 486
L GI+DL TG T+ST P + + ++ F +E++ Y
Sbjct: 523 ELNTPAGIVDLRTGTVRAAEPAALHTRSTAVPVDLTADPGRWNEFLADTFGDNDELITYL 582
Query: 487 TRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEA 546
R VG +++G G GG+GK + + G+ Y A +M P
Sbjct: 583 RRLVGYSVVGHVGPHVLPFCHGSGGNGKGVFLEALAGVLGD-YATTAPVGFLMAQSHP-- 639
Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
+ RL GSR+VI SE NE+D + AK+K +TGGD +TAR + ++ +P +
Sbjct: 640 -GHETEIARLAGSRMVICSEVNEDDRFDEAKVKMLTGGDSLTARFMRQDHFTFTP-THQL 697
Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD--ASFAQKLETKYTLEAKKWFLKGVK 664
+++ N VR+ ++WRR +IPF+ + L + W G
Sbjct: 698 WLMGNHQPAVRSGGRSFWRRLRLIPFNHEVPEEKIVDDLQGILVRDHGPALLAWITAGTT 757
Query: 665 AYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDI--GENLWEESHSLAKSYSEYR 722
Y + GL P+ A E D+ ++ +CC + GE++ ++ + ++Y ++
Sbjct: 758 QYHASGLQ--EPDSVKAATAEYAHDQDSVAKFVQECCHLGGGEHVTIKTAKVREAYEQFC 815
Query: 723 EQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDNS 782
E +S + + L+++ + + + R+ L L ++ D S
Sbjct: 816 YAEGE---TPVSAKALGTALEKR-------FKVLRLRTPAARLYGNLSLLIDEDASSDAS 865
Query: 783 NIID 786
+ D
Sbjct: 866 STRD 869
>gi|95928523|ref|ZP_01311270.1| Phage/plasmid primase P4-like [Desulfuromonas acetoxidans DSM 684]
gi|95135313|gb|EAT16965.1| Phage/plasmid primase P4-like [Desulfuromonas acetoxidans DSM 684]
Length = 498
Score = 326 bits (835), Expect = 1e-86, Method: Composition-based stats.
Identities = 92/462 (19%), Positives = 169/462 (36%), Gaps = 40/462 (8%)
Query: 308 SDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVF 367
+D N Y + K W++ + W ++ + + V
Sbjct: 32 TDYGNALRIKFYFDRLIFFHHAQKNWFRWTGCH---WQRDTNQCLTLQIVEAIRKILTVE 88
Query: 368 DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSR 427
+K F + + S++K A L A + + + LD+
Sbjct: 89 IPWLRYLKEDKQRDDIAFPDTSFVEK----SLSRSKIRAAGLLAADLMPLPAH-LDAHKE 143
Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFES-EEVMDYF 486
L Q+G +DL++G+ +E Y+TK F + F+ + F E + +
Sbjct: 144 LLNCQNGTVDLKSGELKDHDREDYLTKIAPFAFEKDAQCPRFIAFLERAFPDNPEGIAFI 203
Query: 487 TRCVGMALLGGNKAQRFIHIRG-VGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545
+ G +L G ++ + G G +GK+ L N+ + G + + + ++ R
Sbjct: 204 QKIFGYSLTGDVSEKKIFILWGAAGNNGKTLLFNVFRGILGQCFCVQLASESLVSGR--- 260
Query: 546 AGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFT 605
+ +L+G R V SET+ + N A IK +TGGD +TAR + + +P
Sbjct: 261 INAIRSDIAKLIGYRFVTASETDRRYKFNEALIKLLTGGDALTARHPHEREFEFTP-ELK 319
Query: 606 PFIVPNKHLFVRNPDDAWWRRYIVIPFDK--PIANRDASFAQKLETKYTLEAKKWFLKGV 663
FI N D A R +IPF P +D QKL + W ++G
Sbjct: 320 LFIGTNAKPEFTLSDQAMLNRVCIIPFHVSIPPEEQDKQLTQKLINEEGEGILAWAIEGA 379
Query: 664 KAYISKGLDVDIPEVCLKAKEEERQGTD---------TYQAWIDDCCDIGENLWEESHSL 714
+ + +GL + D T +I CC E++H L
Sbjct: 380 RLWAKEGLGENP------------FDQDSASVITPVITIDQFIKACCTQNPGDREKTHDL 427
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKI 756
+++ Y+E + ++ + + + KGF K +
Sbjct: 428 MTAFNLYKEHTGDES-PAVNVKAFSNMI--KGFGTEAKHHRD 466
>gi|284504180|ref|YP_003406895.1| D5 family helicase-primase [Marseillevirus]
gi|282935618|gb|ADB03933.1| D5 family helicase-primase [Marseillevirus]
Length = 903
Score = 324 bits (831), Expect = 3e-86, Method: Composition-based stats.
Identities = 132/688 (19%), Positives = 238/688 (34%), Gaps = 80/688 (11%)
Query: 152 TPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREIT 211
+ ++ L +D+ Y+ Q P + I K T + +
Sbjct: 231 DSLLGEEADEMDLEIPKDLPYILS-IQRRREPTPIVRGIIPSEKKMTRRKRPARLTKTVD 289
Query: 212 AFLSCFGE-------EFYNGS----HDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTY 260
++ E + + S +D+W+ V + + G + E+ +S + S +
Sbjct: 290 QIMADIAEVRNSRVLDMLDSSRAENYDDWMNVGWTLFNIGNGLPEALELWIDFSSRASNF 349
Query: 261 DEENFNYKWDTFDFEE--IGDTAKKRSTFTSLFYHHGKL---------------IPKGLL 303
DE+ Y WDT + + IG + Y+ K +
Sbjct: 350 DEKKCEYLWDTMEMKGKSIGSLYQMAKNDNPEKYNDWKKEKSSEAMKGAMTAAKPTHANI 409
Query: 304 ASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMK 363
AS Y+ K + Y W+K D N + I+ +
Sbjct: 410 ASLIHIKYSDRFVCADSKANVWYEFRGHRWHKMDDAN-----ELMRIISFELPEEFRVEI 464
Query: 364 EDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLD 423
+ ++ + +D N + + + K + LD
Sbjct: 465 NRLSAITGQSQDPNSQLTIKKCVDIQSKLQMDGFSQGVMKMCKRLFLNEHFL----SKLD 520
Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPF----VEGEPSQEFLDLVSGYFES 479
+ LG +DG+ DL+ G + + YI+ STG + E E + + F +
Sbjct: 521 ENRDLLGMEDGVCDLKLGIFRDGSPDDYISMSTGISYKALSEEDRSVIECREFLKKLFPN 580
Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539
+ R V + GGN+ +R G G +GKS +L++Y FG QY+I +
Sbjct: 581 PRIRKCALRMVSSCMQGGNRNKRIYICTGKGNNGKSVFFSLLEYIFG-QYLIKFPREMCL 639
Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599
R A P L R G+R +I E ++N++ N +K+++G D R +
Sbjct: 640 AGRAGNPSSARPELARAPGTRYGVIQEVHKNEKFNPGILKELSGNDSFFVRNLFEKGRDI 699
Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI-ANRDASFAQ--KLETKY----- 651
P FT F++ NK V D A W R +IPF+ + +D ++ + +L +
Sbjct: 700 KP-MFTIFMMANKPPGVPGSDQATWNRIRLIPFEATFLSEQDENWIEDPELRREAKMFKA 758
Query: 652 ----------TLEAKKW-FLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDC 700
A W ++ + Y +GL PE A + R DT + +I DC
Sbjct: 759 DEHFEEKIPGLAHALLWLCVEDFRKYKEEGLC--EPEEVEAATAKMRARNDTIRKYIRDC 816
Query: 701 CDIGENLWE-------ESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKR 753
+ E L Y E+ ++ + V + F R
Sbjct: 817 LIVDREKKEDDEKTFLTVSELFNHYKEWHDENFP-------SYAVRKTMTILKFRKQFAR 869
Query: 754 EKIEKEWKSKRIIKGLKLKPAFESVDDN 781
++ + + + +GL K DD
Sbjct: 870 A-VKIQPINGKKFEGLSFKEQENLEDDE 896
>gi|169334190|ref|ZP_02861383.1| hypothetical protein ANASTE_00588 [Anaerofustis stercorihominis DSM
17244]
gi|169258907|gb|EDS72873.1| hypothetical protein ANASTE_00588 [Anaerofustis stercorihominis DSM
17244]
Length = 359
Score = 323 bits (829), Expect = 6e-86, Method: Composition-based stats.
Identities = 76/365 (20%), Positives = 149/365 (40%), Gaps = 16/365 (4%)
Query: 416 SITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSG 475
I+ DS ++G L ++T + ++ +TK + + S + +S
Sbjct: 4 PISVSEFDSDPYIFNCKNGTLRVDTFECLEHKSSDKLTKISNVIYDPNAKSHRWDKFISE 63
Query: 476 Y-FESEEVMDYFTRCVGMALLGGNKAQRFIHIRG-VGGSGKSTLMNLIKYAFGNQYVINA 533
F +E + + +G L G + + + G +GK TL + G+ Y A
Sbjct: 64 IMFGDKEKAKFLQKLLGYGLTGDTRHECMTILYGASTRNGKGTLCESVLKVLGS-YGCTA 122
Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593
+ Q + + + RL G R V ISE + +NAA++K MTG D + AR +
Sbjct: 123 RPETLAQKNNANSSQPTEDIARLAGVRFVNISEPGKGLVLNAAQVKSMTGNDTINARFLH 182
Query: 594 GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKY 651
N++ P F +I N V + R I++PF++ + +D S Q+
Sbjct: 183 ENSFDFQPL-FKLYINTNYLPAVNDMTIFTSGRVIIVPFERHFDESEQDKSLKQEFSRPE 241
Query: 652 TL-EAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEE 710
W L+G +GL + P A + +D +++DC + G+ E
Sbjct: 242 VQSAILNWLLEGYALLRKEGLVL--PHSVKDATARYQHDSDKMVLFMEDCMEQGD-FEER 298
Query: 711 SHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLK 770
+ S+ + Y ++ + +Y S + +L+ + + R++ + + ++ G +
Sbjct: 299 TSSVYRCYKDWCAENGHYAE---SMKNFKQSLEA---VANVVRKRPKGGGEKTTMVIGYR 352
Query: 771 LKPAF 775
L F
Sbjct: 353 LLSDF 357
>gi|218529937|ref|YP_002420753.1| hypothetical protein Mchl_1974 [Methylobacterium chloromethanicum
CM4]
gi|218522240|gb|ACK82825.1| phage/plasmid primase, P4 family [Methylobacterium chloromethanicum
CM4]
Length = 485
Score = 322 bits (824), Expect = 2e-85, Method: Composition-based stats.
Identities = 94/466 (20%), Positives = 170/466 (36%), Gaps = 41/466 (8%)
Query: 312 NKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSE 371
F+ G LY D+ WY+ W I L+
Sbjct: 50 AAQAFAQRYAGRLLYCHDSAKWYEWTG---VAWKPNRCGIAFHWSRELIREL-------- 98
Query: 372 EPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGE 431
F +D R + A + ++T + D+ LG
Sbjct: 99 -------------FAEKSDRTRYIASKVEFAGGIEKYCRHDPALAVTIEGWDADPWLLGT 145
Query: 432 QDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEE-VMDYFTRCV 490
G +DL TG+ K +E +TK T E +L + + + + + +
Sbjct: 146 PGGTVDLRTGELRKAHREERVTKLTAVAPAEASGCPTWLRFLDDVTQGDAGYIRFLQQWA 205
Query: 491 GMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKAN 550
G L G Q G GG+GK L++++ Y +NA ++ +
Sbjct: 206 GYCLTGDTSEQVLCFAFGGGGNGKGVLIHVLAGIL-KDYAVNAAMETFTASKH---DRHP 261
Query: 551 PSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVP 610
+ L G+R+V SET + + A+IKQ+TGGD M AR + + +P I+
Sbjct: 262 TEIAALRGARLVTASETEQGRQWAEARIKQLTGGDTMRARYMRQDEFEFTPV-LKLLIIG 320
Query: 611 NKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKG 670
N + N DDA RR+ ++PF A D +KL ++ +W ++G + +
Sbjct: 321 NNKPGLSNVDDAARRRFNLLPFLFKPAVPDPRLEEKLRAEW-PAILRWMIEGCLDWQANR 379
Query: 671 LDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIG---ENLWEESHSLAKSYSEYREQELN 727
L P+V +E DT+ W+++ C + + L S++E+
Sbjct: 380 LVR--PDVVKVVTDEYFSAQDTFSLWLEERCVVDRANPYRKATTQDLFASWTEFARLNNE 437
Query: 728 YDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773
+ + +++ GF + R +G++++P
Sbjct: 438 ---PPGTLTSFGERMEKLGFKK--NKHVPTVVGSRARGFEGIEVRP 478
>gi|291563668|emb|CBL42484.1| phage/plasmid primase, P4 family, C-terminal domain
[butyrate-producing bacterium SS3/4]
Length = 496
Score = 321 bits (822), Expect = 3e-85, Method: Composition-based stats.
Identities = 88/476 (18%), Positives = 174/476 (36%), Gaps = 36/476 (7%)
Query: 308 SDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVF 367
S+ +F + Y + K+WY + W I + + +
Sbjct: 43 SEMGMANLFGLLYSHEARYCPEHKSWYTYHEGA---WRKDEGAI--LVSEKIKDFVRLMI 97
Query: 368 DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSR 427
E ED++ F RR +A I++ D+
Sbjct: 98 LYCGEIEDDDTRKSYTGFVNKMGDRRMR---------DRILKDAAGELRISAVRFDADPY 148
Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP--SQEFLDLVSGYFE-SEEVMD 484
+ +G DL + + + ++T T + + + + + E+ D
Sbjct: 149 LINCLNGTYDLRDFSFREHSWDDFLTMQTAFSHTISKTVKCKRWEKFIKEVTQNDEDKAD 208
Query: 485 YFTRCVGMALLGGNKAQRFIHIRG-VGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP 543
+ R +G ++LG + + + G +GKSTL+N I+ G+ + +R
Sbjct: 209 FLQRALGYSMLGMSNEECMFILHGKTTRNGKSTLLNTIETMLGDYAKVAPVGMICRGDRQ 268
Query: 544 PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPAS 603
+A A+P+L L G R V +SE+NE +++ KIKQ+TGG+ ++AR Y + + P
Sbjct: 269 KDAEAASPTLAGLKGKRFVTMSESNEYGKLDEEKIKQLTGGEEISARALYQSAITFKP-Q 327
Query: 604 FTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKL-ETKYTLEAKKWFL 660
FT ++ N V + R V+ F++ +D +L E W +
Sbjct: 328 FTLWLSCNDLPMVTDKSLFASERIKVVEFNRHFSPEEQDTHLKDELCEQSSMSGIFMWLV 387
Query: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLW----EESHSLAK 716
+G Y +GL + + + D ++++ C+ ++ L
Sbjct: 388 RGYIHYKERGLAMSG--SLKSVVTKYERDNDLVLQFLENRCERVPEESSPTVIKAKDLYN 445
Query: 717 SYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLK 772
++ + + E Y +S R +++ + + GLKLK
Sbjct: 446 AFKIWAKSEGAYI---LSARKFNSEMER-----HPEWFDRKSTSSGYATYCGLKLK 493
>gi|317125794|ref|YP_004099906.1| phage/plasmid primase, P4 family [Intrasporangium calvum DSM 43043]
gi|315589882|gb|ADU49179.1| phage/plasmid primase, P4 family [Intrasporangium calvum DSM 43043]
Length = 463
Score = 320 bits (819), Expect = 7e-85, Method: Composition-based stats.
Identities = 103/505 (20%), Positives = 180/505 (35%), Gaps = 48/505 (9%)
Query: 275 EEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWY 334
DT+ + + +A R + Y + ++ G + D K W
Sbjct: 2 TATADTSIFDENGRPMSSSGENHTGQVRMAYRLARRYVDRLLYVHGLGW--HHFDGKRWA 59
Query: 335 KKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQ 394
+ D+ + + ++ S+ E V D
Sbjct: 60 EDDQGHAR-------RAVLEVLRE--SLAESVGD------------------KQLRMDVT 92
Query: 395 NVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITK 454
E + A F+ T +D+ L +G LDL T +TK
Sbjct: 93 RCESAAGVSGVLDIAAALVEFAATVRDVDADPWLLNCANGTLDLRTRALRPHDPSDRLTK 152
Query: 455 STGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGK 514
T + S E+ ++ ++ Y R +G ++ G + F + GVG +GK
Sbjct: 153 VTTGAYDPEADSSEWHAFLASVLPDQDERAYLQRVIGQSVYGRVREHLFPVLIGVGANGK 212
Query: 515 STLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEIN 574
T I +A G+ Y +M G P ++ LMG+R+VI SET + +++
Sbjct: 213 GTTYGAISHAMGD-YASIINPELLMVRERGGVGG--PEMMTLMGARLVIGSETEDGRKLD 269
Query: 575 AAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK 634
+K++TGGD +TAR Y S P S V N V+ D A WRR V+PFD
Sbjct: 270 ETLMKRLTGGDELTARRLYREPVSWRP-SHQLIYVTNHLPKVKGNDPATWRRIRVVPFDV 328
Query: 635 PIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDT 692
+ RD ++L W + G Y G + P ++A + +D
Sbjct: 329 VVPVMQRDPELPERLALHA-DAILTWVIAGHFDYEDNG-GMREPASVVRATGAFQADSDA 386
Query: 693 YQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIK 752
+I + C+ G+ + + L ++ + E +S R L + G+
Sbjct: 387 VARFIAEECETGDYVHVRTRDLYGAWRRWAVSEGA---DEMSERAFAKELDRLGYEA--- 440
Query: 753 REKIEKEWKSKRIIKGLKLKPAFES 777
+ ++ + GL L +
Sbjct: 441 -----RRTRNGAVRAGLTLPDDAQG 460
>gi|13358409|ref|NP_078717.1| D5 family NTPase involved in DNA replication [Lymphocystis disease
virus 1]
Length = 874
Score = 319 bits (817), Expect = 1e-84, Method: Composition-based stats.
Identities = 104/583 (17%), Positives = 199/583 (34%), Gaps = 71/583 (12%)
Query: 209 EITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYK 268
++ + E N W+ + + T GS++G ++ +SK+ ++++
Sbjct: 269 KLQKLIDLLPNECSN-DRIIWLEIGFCLWQITDGSNEGFQLWLSFSKRSEKFNQDECFDI 327
Query: 269 W------------------DTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDA 310
W ++ D + + +Y G + +A
Sbjct: 328 WFKQMKPNSFTIASLYWFIKKYNPIGFIDYIRLYKCSPAKYYTDGSHVG---IAKIIHHH 384
Query: 311 YNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLS 370
+ K H + D W + + I L + +L
Sbjct: 385 FKMEFKCSSIKNHTWFKYDDVVWAECHVG--VNLRRIISDAKGPIFRVLNQQIIVISNLI 442
Query: 371 EEPEDNNKN---SKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLL----- 422
E +++ + + KS + S+ +L
Sbjct: 443 NNEELDDEYYIWQSKLIHLSTEELINFRTQLCKIKKSLRMTQFKNSVMRECEELFFDPLF 502
Query: 423 ----DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ----------- 467
DS+ + Q+G+ D + + + Y +K +V+ SQ
Sbjct: 503 NQKIDSNPYLMAFQNGVFDFKQKLFRQGRPDDYCSKKLTINYVDYGISQLLSCNPEDFIN 562
Query: 468 ----EFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKY 523
E L + F E+ +F R + A +GGN + + G G +GK+ L++
Sbjct: 563 QGLKETLIFLEQVFPDIELRVFFIRQLASAFIGGNSEKICLFWTGSGNNGKTITQTLMEQ 622
Query: 524 AFGNQYVINAEASDIMQNRPPEAGKANPSLIRL-MGSRIVIISETNENDEINAAKIKQMT 582
FG + + S I + P G+ANP L+R G R ++ E + ++ INA +K +T
Sbjct: 623 MFG-PFAVKLNTSVITGKKLPT-GQANPELVRTGGGVRWAVMEEPDSDERINAGILKSLT 680
Query: 583 GGDCMTARLNY--GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI---A 637
G D AR Y G E F ++ N ++ D A W R VIPF+
Sbjct: 681 GNDTFWARDLYCTGKDTKEIIPMFKLHVICNNLPEIKYADQAVWNRVRVIPFESVFKLAE 740
Query: 638 NRDASFAQKLETKYTL------EAKKWFLKGVKAYI------SKGLDVDIPEVCLKAKEE 685
++ ++L K E ++ + Y+ L+ + P L A +E
Sbjct: 741 ECPDTYKERLNQKIFPVDLKFSEKLSKLIEPLAYYLIYYWLNMDRLNYNPPTKVLNATKE 800
Query: 686 ERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNY 728
+ D Y+ +ID+ +N+ L Y ++ + Y
Sbjct: 801 YQNDNDIYKQFIDNNLIKQDNIILTERLLYIRYKDWLAETHPY 843
>gi|303245321|ref|ZP_07331605.1| phage/plasmid primase, P4 family [Desulfovibrio fructosovorans JJ]
gi|302493170|gb|EFL53032.1| phage/plasmid primase, P4 family [Desulfovibrio fructosovorans JJ]
Length = 545
Score = 318 bits (816), Expect = 2e-84, Method: Composition-based stats.
Identities = 94/490 (19%), Positives = 187/490 (38%), Gaps = 38/490 (7%)
Query: 310 AYNKAMFSIYKKGHFLYTADTK-AWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFD 368
+ +++ KG L + K W++ Y +T+ + A + + ++ +
Sbjct: 51 KGDGILYAAVHKGTLLCAPELKSQWFEW--TGAYWKQVTVYRAEALVEAVVAQYEQTRLE 108
Query: 369 LS------EEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQ-SLEAGSIFSITSDL 421
++ D+ + R ++ E S + + +L + +
Sbjct: 109 TELKISEVKQARDDEAEKRLQRLSKRLRKNVDDLREGSGVSAALRFALSNDDPLLVRMEE 168
Query: 422 LDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVE-GEPSQEFLDLVSGYFESE 480
D+ LG +G++DL TG+ K + ++ G + P + V +
Sbjct: 169 FDADPYLLGVANGVVDLHTGEFRKARPGDRVRRTCGVEWQGIDAPVPLWPSFVQEIVGDD 228
Query: 481 -EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539
EV + R G A+ G + F+ + G G +GK+ ++ + G+ +
Sbjct: 229 PEVAAFLQRVFGYAITGLSCEPLFVVLAGDGRNGKTVMVETLGKVLGDYMAPIPAELLLD 288
Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599
Q + +A K P+++ L G RI +E++EN + A++K ++G D +T R + S
Sbjct: 289 QGQARDADKPTPTIMSLNGLRIAYATESDENRRFSIARVKWLSGDDRLTGRYMWDRDPSS 348
Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF-----DKPIAN----RDASFAQKLETK 650
+ T F++ N + A+W R ++ F DKP RD + ++LE K
Sbjct: 349 FYPTHTLFLLTNHKPHAGAHEYAFWDRLRLVNFPYRYVDKPTREHERQRDRTIPERLE-K 407
Query: 651 YTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDC-CDIGENLWE 709
W ++G + G + P L A EE ++ D Q ++D+C
Sbjct: 408 ELPGILAWLVRGCLLWQRDG--IAPPASVLAATEEYQREEDHVQDFVDECLLTTDPTDRV 465
Query: 710 ESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKR-IIKG 768
+ ++ Y+ + N + S L +K I K+ K G
Sbjct: 466 SATAIYDLYTRW--YFKNRGKYVPSMNAFGKQLGRK----------IHKDRKGGTVYYYG 513
Query: 769 LKLKPAFESV 778
++L P E
Sbjct: 514 VQLNPVAEDA 523
>gi|228968960|ref|ZP_04129905.1| hypothetical protein bthur0004_57100 [Bacillus thuringiensis
serovar sotto str. T04001]
gi|228790735|gb|EEM38391.1| hypothetical protein bthur0004_57100 [Bacillus thuringiensis
serovar sotto str. T04001]
Length = 300
Score = 317 bits (812), Expect = 4e-84, Method: Composition-based stats.
Identities = 80/315 (25%), Positives = 138/315 (43%), Gaps = 27/315 (8%)
Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542
M+Y R +G +L G Q + + G G +GKST +N IK G +Y A++ ++ +
Sbjct: 1 MEYMQRLIGYSLTGDISEQIMMFLVGGGSNGKSTFINTIKDLLG-EYGKQAKSDTFIKKK 59
Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602
AN + RL+G+R V E+ E ++++ + +KQ+TGG+ + AR + P
Sbjct: 60 DT---GANNDIARLVGARFVSAIESEEGEKLSESFVKQITGGEPVLARFLRQEYFEFVP- 115
Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFL 660
F F N + D+ WRR +IPF+ + RD +KL + W +
Sbjct: 116 EFKVFFTTNHKPVIGGLDEGIWRRVKLIPFNLNLPSHKRDKRLPEKLSLE-MPGILNWAI 174
Query: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWE----ESHSLAK 716
+G + L P+V +A + + D ++D+ C + E E E+ L
Sbjct: 175 EGCMKWQQGRLK--EPKVVAEATGKYKDDMDILAPFLDEVCYVDERENESITIEAKELYN 232
Query: 717 SYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL---KP 773
Y + N + + R+ L+ KGF K K++ + G+ L KP
Sbjct: 233 VYERWC---FNSGERALGNRSFYRMLETKGF-------GKTKGSKNRTFLTGITLNERKP 282
Query: 774 AFESVDDNSNIIDFK 788
+ V +N+ FK
Sbjct: 283 VTKGVTENNKNGKFK 297
>gi|119383107|ref|YP_914163.1| P4 family phage/plasmid primase [Paracoccus denitrificans PD1222]
gi|119372874|gb|ABL68467.1| phage/plasmid primase, P4 family [Paracoccus denitrificans PD1222]
Length = 613
Score = 314 bits (804), Expect = 4e-83, Method: Composition-based stats.
Identities = 98/534 (18%), Positives = 187/534 (35%), Gaps = 73/534 (13%)
Query: 307 FSDAYNKAMFSIYKKGHF-------LYTADTKAWYKKDKNNVYIWSLTLD---KITASIM 356
+D N F I+ + D W K D+ + + L K++ I+
Sbjct: 67 LNDLGNARRFVIHFGDDILFVSQVGWFVWDGSRWRKDDEISRDVSPLIRAQAHKVSTLIL 126
Query: 357 NFLVSMKEDVFDLSEEPEDNNKN--------------------------------SKSPR 384
+ ++ + D ED + + +
Sbjct: 127 QEIDWLQPNDRDRKLIEEDRDLKVRRREIENAPGYAADESLMKELASIEARLRALDAALK 186
Query: 385 FWFNTDYRR--QNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLE--- 439
+ N RR + + + EA + + D +D + + G+L
Sbjct: 187 SYRNLTTRRLTWAKDAGNSTRIAHMIAEARVMLARAVDDMDQGALDVNTLSGVLRFTRIP 246
Query: 440 -------TG----QKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTR 488
TG + + + +TK + F + + E+ + R
Sbjct: 247 NDPEAGMTGMSSVELIPHDRAQLLTKIMPVIYDPDAKCPRFDSFLEQIQPNIEMRRFLQR 306
Query: 489 CVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGK 548
G+++ G Q+ G G +GKS L++L+ FG+ Y +A +
Sbjct: 307 WFGLSMTGL-AVQKLAFFHGGGANGKSVLVDLMARMFGD-YSASARIESLTGKNKKSGSD 364
Query: 549 ANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFI 608
+ P L+ L+ +R V SE + + + +K +TGG+ M R Y + P F I
Sbjct: 365 SQPDLMPLIAARFVRTSEPEDGERLQEGLVKALTGGEPMMIRALYSDFIIFRPI-FKLTI 423
Query: 609 VPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLET---KYTLEAKKWFLKGVKA 665
N +R DD WRR +++ F I + ++L+ + W ++G+
Sbjct: 424 SGNHLPEIRGGDDGIWRRVMLVNFPVQIPEKKRIPKEELDEILWQERSGILNWLIQGLID 483
Query: 666 YISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIG--ENLWEESHSLAKSYSEYRE 723
++ GL P+ A E R +D ++ D + E + + L ++++ + E
Sbjct: 484 FLDGGLQ--EPDDVTSATEGYRAESDPIGTFLGDATVVTGFEGDFMTARELIEAFNFWIE 541
Query: 724 QELNYDRKRISTRTVTLNLKQK-GFIGGIKREKIEKEWKSK-RIIKGLKLKPAF 775
+ R RTV+ LK K G + K KS +G++L F
Sbjct: 542 ERGE---TRWGNRTVSNKLKAKSGTWRHPETNKTFAPGKSGVTGYRGIRLDDTF 592
>gi|241894876|ref|ZP_04782172.1| primase [Weissella paramesenteroides ATCC 33313]
gi|241871884|gb|EER75635.1| primase [Weissella paramesenteroides ATCC 33313]
Length = 796
Score = 313 bits (803), Expect = 5e-83, Method: Composition-based stats.
Identities = 149/787 (18%), Positives = 281/787 (35%), Gaps = 60/787 (7%)
Query: 18 FKLIPLRLGDKRPQR---LGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFD----- 69
+ IP+ R W + ++ A G F P + D
Sbjct: 30 YTKIPVSAMTGRHASSTDERTWTTFDEALANMEIFDADGLAFFLK---PPFFGIDMDHYQ 86
Query: 70 --IDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLD 127
ID ++ T G+ I I + G K + + ++
Sbjct: 87 DEIDLYEQGYNTTQLGMAIEAMGSYTELSQSHEGIHIIAKGTLPG-DKSRQNQDGDKVVE 145
Query: 128 ILGCGQYFVAYNI----HPKT----KKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQE 179
+ G++F + H T +E + E+ P L + +E+ +E
Sbjct: 146 MYSTGRFFALTGMSIMGHKDTINAPGQEMIDHVYNTLIRPEERPRLEDVVIEHNDLTKEE 205
Query: 180 ITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHE 239
+ + K + N +Y + F+ G D ++ +
Sbjct: 206 VIEKALASNGGANFKKLYDGNWQDEYGSASEADLAFVNLLAFWTG-RDRYL-----MDEI 259
Query: 240 TRGSSKGKEIARRWSKQGSTYDEENFNYK----WDTFDFEEIGDTAKKRSTFTSLFYHHG 295
R S ++ STY E N +T+ + + + Y H
Sbjct: 260 FRDSGLMRDKWDE-KHGKSTYGEGTINRAITDVTETYRPKTEAFSVVIGNGDEEKVYPHH 318
Query: 296 KLIPKGLLASRFSDAYNKAMFSI--YKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITA 353
+G +A RF + + + + K D W + + V+ + L I
Sbjct: 319 DYTDQG-MAERFYERWGDKVLHVDSEKSETTFMVFDGTVWKRDVERVVHKLFIKLSDIIL 377
Query: 354 SIMNFLVS---MKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLE 410
++ E+ D + SK + N ++ K ++A+ L
Sbjct: 378 ETEEPIMPPEPTVENYPDQKDLELAEKNYSKDKKSAINAFHKFAKSVRTDKGLNSAKKLL 437
Query: 411 AGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFL 470
A S+ ++ ++ D + DG+ DL TG++ + Y TKST + +EF
Sbjct: 438 A-SMVNVDINIFDKEVGVINTPDGVYDLATGERSDNDPKRYFTKSTLIAPDKNLEPKEFK 496
Query: 471 DLVSGY-FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529
++ +++DY + VG ++ G + Q ++ + G G +GK LM+ IK A G+ Y
Sbjct: 497 TFLNQVMLGDADMVDYLMKFVGYSMFGNGEEQEYVLLYGNGRNGKGVLMSAIKNALGD-Y 555
Query: 530 VINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTA 589
V M + N L RL G+R+V +SE +N +++AA IK++TGG A
Sbjct: 556 VTAVNPDTFMDDGKKSTSN-NDELARLRGARLVSVSEIAQNKKLDAAIIKKLTGGGTFVA 614
Query: 590 RLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKL 647
Y Y ++ PF N + + + WRR VIPF+ I D + KL
Sbjct: 615 NEKYNRPYEFQ-SAGVPFFDTNYLPQINDTSEGIWRRTNVIPFNLTIKEEDVDVNLGHKL 673
Query: 648 ETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENL 707
ET+ + +K + ++GL +P +A E+ +D +I + E
Sbjct: 674 ETEAG-AILWYLIKAATKWRNEGLGP-VPYAVKQANEKYHSSSDPIGEFIKETFIENEAG 731
Query: 708 WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIK 767
+ E + ++ ++ + + + L ++ K ++ + R K
Sbjct: 732 FVEGPDVTNAWGQFV---GEEPDDYPTRKMLGSELAKR-----FKTKRTAR----GRGYK 779
Query: 768 GLKLKPA 774
G+ LK
Sbjct: 780 GIMLKEG 786
>gi|225018075|ref|ZP_03707267.1| hypothetical protein CLOSTMETH_02012 [Clostridium methylpentosum
DSM 5476]
gi|224949072|gb|EEG30281.1| hypothetical protein CLOSTMETH_02012 [Clostridium methylpentosum
DSM 5476]
Length = 775
Score = 313 bits (802), Expect = 7e-83, Method: Composition-based stats.
Identities = 134/758 (17%), Positives = 247/758 (32%), Gaps = 76/758 (10%)
Query: 19 KLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDID-SKDEKT 77
+ P + + W + + K GF F + DID DE+T
Sbjct: 27 PINPATGQGAKAGQPDTWTTFERAVQASRKYDGIGFEF----HNNGIVGIDIDHCIDEET 82
Query: 78 A----NTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQ 133
+ T G L + G ++ + ++++ +
Sbjct: 83 GEIDPAALAIIRTMNSYTEKSPSG---TGLHIYVY---GDIPSSGRKNPKRNIEMYKEKR 136
Query: 134 YFVAYN----------IHPKT-----KKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQ 178
YF P + + P + +P S ++ + +
Sbjct: 137 YFTVTGEVFGDCTKVARRPDEVKALYNELFPKPNKPALLRGRMSPQTSVSSLDRGLQHDR 196
Query: 179 EITVPLVKDKKSIIPSKT--WTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAV 236
E+ ++ + S N + NR+ A + F E Y DE
Sbjct: 197 ELQRLWSGERNTGDESSNDMALMNKLAYWCNRDAAAMVQAFRESPYTQQKDE-------- 248
Query: 237 HHETRGSSKGK-----EIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLF 291
H + E A ++ + D + + E ++ S T
Sbjct: 249 KHLAKLERDDYLPRTAERAIADCQRTAADDRDE----YRRNKVERAKQASQPASPIT--- 301
Query: 292 YHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKI 351
+ L +D MF+ +G LY + K+++ +W +
Sbjct: 302 -------AESLKKYALNDKGAAQMFADTYRGRTLYLPEYKSYWTYKNG---VWIQDKQDL 351
Query: 352 TAS--IMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSL 409
+ + + + + P + + P YR+ + S
Sbjct: 352 QTRQLVKRWTDYVLSVIPEKQLSPIQYDPTTGKPPEDEWEVYRKHYGKYCSLRSRDNLIK 411
Query: 410 EAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF 469
+A + S D + ++G L+LE + + ++K + F
Sbjct: 412 DARDELAGYSTDFDRNPALFNCKNGTLNLENLKLLPHNPADMLSKQANVNYDPAASCPRF 471
Query: 470 LDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRG-VGGSGKSTLMNLIKYAFGN 527
L + +EE + F + +G AL G + F G +GK TL + + FG+
Sbjct: 472 LQFIEEITEGNEERANMFQKALGYALQGDANEECFFLALGKKTRNGKGTLFDSVMNVFGS 531
Query: 528 QYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCM 587
Y + + I + + +A P L RL+G+RIVI +E ++ IN A +KQ+TG D +
Sbjct: 532 -YGAQMDFNTIARGGVKDGSRATPDLARLIGTRIVISNEPDKGVAINEALLKQLTGNDDI 590
Query: 588 TARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDASFAQ 645
T R YG+T PA F F+ N V + R ++PF + RD S
Sbjct: 591 TCRPLYGDTIQFKPA-FKLFVTANSKPSVSDDSLFASDRIKMLPFTQHFKEDQRDTSLKA 649
Query: 646 KLETKYT-LEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIG 704
++ W L+G + Y +GL E R+ D ++DD D
Sbjct: 650 LFRSEEAKSSILNWLLEGYRKYKEEGLRDT--AEMKALAAEYRKENDYVGMFLDDRFDRD 707
Query: 705 ENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNL 742
+ +L Y+ + + K + R L
Sbjct: 708 APRYTTVKALRADYATWCDF---VGAKPMGLRLFKEEL 742
>gi|217978348|ref|YP_002362495.1| P4 family phage/plasmid primase [Methylocella silvestris BL2]
gi|217503724|gb|ACK51133.1| phage/plasmid primase, P4 family [Methylocella silvestris BL2]
Length = 554
Score = 313 bits (801), Expect = 1e-82, Method: Composition-based stats.
Identities = 77/461 (16%), Positives = 156/461 (33%), Gaps = 29/461 (6%)
Query: 307 FSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDV 366
+D N F+ K + Y D W D W+ + +
Sbjct: 65 LTDLGNAERFAARHKDNLRYCPDIG-WLHWDGRR---WAREGAEEVVKRAEHVTVRAIQD 120
Query: 367 FDLSEEPEDNNKNSKSPRFWFNTDYRRQNV---EENSKAKSTAQSLEAGSIFSITSDLLD 423
++ ++ + + V + + + S A S+ SI LD
Sbjct: 121 EAVALRESGHDAVFIDAKGKETLLSDKIAVWGRTSEAANRMASISKRADSMLSIQVGDLD 180
Query: 424 SSSRFLGEQDGILDLETGQ------KVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY- 476
+ + +G L + + YITK + + + +
Sbjct: 181 ADKMKISVANGTLHIAKRDDGPYVVLKRHDPADYITKISPVGYDAEAVCPRYDRFLDEVQ 240
Query: 477 ----FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532
+V + + G++L G Q+ G G +GKS + I + G+ Y +
Sbjct: 241 PPDAAGGRDVQIFLNQWAGLSLTGDTSEQKITFHYGKGRNGKSVWVKTISFVAGD-YADS 299
Query: 533 AEASDIMQN-RPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARL 591
+ + R G+A P L L G R++ SE + ++ IK +GGD + AR
Sbjct: 300 IPIESFLDSGRARAGGQATPDLAGLPGVRMLTTSEPKKGATLDEGLIKLFSGGDVIKARH 359
Query: 592 NYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLET 649
++ +P + N + D+ W R +++P+ RD +KL
Sbjct: 360 LNKGFFAFTP-QAKLTMQGNYRPRITGADEGIWNRLVLVPWGVYFPADKRDPRLEEKLRG 418
Query: 650 KYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWE 709
+ + L G+ A++ GL IP A + R +D +++ C
Sbjct: 419 EAS-GVLNRLLDGLCAWLDGGLR--IPSSVAAATADYRSDSDPLGRFLEACTRQAIGKRV 475
Query: 710 ESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGG 750
++ + ++ + + S + + +K++G
Sbjct: 476 QATDMHALFAAWAKSNGEA---VWSAKGLGAAMKERGLAAK 513
>gi|325685155|gb|EGD27281.1| phage/plasmid primase [Lactobacillus delbrueckii subsp. lactis DSM
20072]
Length = 831
Score = 312 bits (800), Expect = 1e-82, Method: Composition-based stats.
Identities = 100/515 (19%), Positives = 192/515 (37%), Gaps = 38/515 (7%)
Query: 279 DTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYK--KGHFLYTADTKAWYKK 336
D ++ F FY+ + + A+RF+D Y K + K +Y +T +W
Sbjct: 331 DGVEREFPFNGYFYNRDYEMTEVGFANRFADWYAKGKLVYHPGLKAWLMYNPETGSWMPN 390
Query: 337 DKNNVYI-WSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQN 395
+ + ++ T +K+ ++ L K + +P +K S + +N Y R
Sbjct: 391 GDDRLGTTFNQTPEKLIDNLRVNLKKEKRLWLTVGRDPHKPDKQSFGEKA-YNKGYER-- 447
Query: 396 VEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKS 455
+ + K+T + ++ +T + L + G +DL+TG + K+
Sbjct: 448 ISSAAGQKATLELAQSR----LTVRAFNDCKTELNTRTGWIDLKTGAISPHSPAKLFDKA 503
Query: 456 T----GTPFVEGEPSQEFLDLVSG-YFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVG 510
T EG+ + + + + E++DY C+G ++ G + G G
Sbjct: 504 TDAGLPNKATEGDGGKLWDRFLKETFCGDLELIDYVQACIGYSVTGKINEEVMFICEGSG 563
Query: 511 GSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP--PEAGKANPSLIRLMGSRIVIISETN 568
G+GKS + I G+ Y ++ N + +P L L G R V+ +E
Sbjct: 564 GNGKSIFLECINEVLGD-YSSVIPIETLIDNNKAQRDGSAPSPDLASLKGKRFVMTTEPK 622
Query: 569 ENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYI 628
+ I+ +K +TGG + R+ + N P F + N + + + RR I
Sbjct: 623 KQVTIDDGIVKTVTGGTKLNVRMLHQNPIVFLP-QFKIWWQSNGLPRIAIKEHSMLRRLI 681
Query: 629 VIPFDKPIANR--DASFAQKLETKYTLEAKKWFLKGVKAYISKG-----LDVDIPEVCLK 681
VIPF + D + KL K KW ++GV + ++ P +
Sbjct: 682 VIPFKNEVRGDAVDINLKSKL-MKEKEFILKWCIEGVAKWQARDGKALYHPKYQPAAVEE 740
Query: 682 AKEEERQGT----DTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRT 737
A D+ + W+++ + E + + Y +Y ++ K S
Sbjct: 741 ATAGLWNSAHVPVDSIKQWLENG-NYEEGHSSTPPKVKEVYEDYLAYCKEHELKVPS--- 796
Query: 738 VTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLK 772
++GF + R K + + LK
Sbjct: 797 ---AYTKQGFNKELARRGHHKRPGTGNSYVWISLK 828
>gi|319783591|ref|YP_004143067.1| phage/plasmid primase, P4 family [Mesorhizobium ciceri biovar
biserrulae WSM1271]
gi|317169479|gb|ADV13017.1| phage/plasmid primase, P4 family [Mesorhizobium ciceri biovar
biserrulae WSM1271]
Length = 451
Score = 312 bits (798), Expect = 2e-82, Method: Composition-based stats.
Identities = 98/468 (20%), Positives = 170/468 (36%), Gaps = 48/468 (10%)
Query: 308 SDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVF 367
+D F+ Y W D +W+ ++ N+ ++ D
Sbjct: 22 TDEALALEFARRHAMRTRYVDGWSRWMLFDG---VVWAPDE---ILTVYNYARALCRDDA 75
Query: 368 DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSR 427
+ P D + + + + + D D
Sbjct: 76 ANAL-PRDGGR-----------------ILSAKTVAAVVSLARSDPALAAVVDQWDEDPM 117
Query: 428 FLGEQDGILDL-ETGQKVKPTKELYITKSTGT-PFVEGEPSQEFLDLVSGYFESEEVMDY 485
L ++ L G + Y+TKST P + EFL+LV+ ++DY
Sbjct: 118 ALNCDGEVVQLGAEGCSRRVIPGDYMTKSTAVGPGGDCSLWLEFLNLVTS--GDGALIDY 175
Query: 486 FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545
R G L G + G GG+GKST + I G+ Y A +
Sbjct: 176 LQRVCGYCLTGLTVEHALFFLWGPGGNGKSTFIETISGVVGD-YAKTAGIDTFTAS---A 231
Query: 546 AGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFT 605
+ + L L G+R+V +ET + + +IK +TGGD ++AR + + SP F
Sbjct: 232 SDRHPTDLAALQGARLVTATETAKGRSWDETRIKTLTGGDRISARYMRQDFFEYSP-QFK 290
Query: 606 PFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDASFAQKLETKYTLEAKKWFLKGV 663
I N + N DDA+ RR+ +IPF I + R F+ +L ++ W ++G
Sbjct: 291 LMIAGNNKPALVNVDDAFRRRFHMIPFIVRIPDDKRILGFSDRLREEW-PGILAWMIEGA 349
Query: 664 KAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYRE 723
+ GL P + A +E DT AW+++C + + +E SL S+ +
Sbjct: 350 GHWRRLGLSP--PPAVVAATQEYLDSEDTIGAWLEECTERVADGFESRQSLFSSWKAFAA 407
Query: 724 QELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771
+ + + L + I KR + R G+++
Sbjct: 408 RTGENPG---TQKQFVSALAGRTGIYPHKRHGV-------RGYLGIRI 445
>gi|169825390|ref|YP_001691283.1| hypothetical protein M446_7040 [Methylobacterium sp. 4-46]
gi|168199312|gb|ACA21258.1| hypothetical protein M446_7040 [Methylobacterium sp. 4-46]
Length = 450
Score = 311 bits (796), Expect = 4e-82, Method: Composition-based stats.
Identities = 88/458 (19%), Positives = 159/458 (34%), Gaps = 41/458 (8%)
Query: 313 KAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEE 372
A+ + LY W++ W V D +
Sbjct: 26 AALVVERFRDQLLYDHGQALWFEW---AGTCW---------------------VPDTTGG 61
Query: 373 PEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQ 432
D + + ++ + + F S+ D LG
Sbjct: 62 VFDRCHTVVQEQMRLLSPKKQVRLGTAKFVSGVEKLCRHARTFVAQSEDWDGDPMVLGTP 121
Query: 433 DGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESE-EVMDYFTRCVG 491
G++DL TG+ + ITK T + FL ++ S+ +M + + G
Sbjct: 122 GGVVDLTTGKMRRAEPGDRITKQTAVAPADTADCPRFLRFLNEATGSDLGLMRFLQQWAG 181
Query: 492 MALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANP 551
+L G + + G GG+GKS + ++ A + Y A + ++ +
Sbjct: 182 YSLTGRTTEHAVVFVFGGGGNGKSVYLKVLATALAS-YAATATMDAFVASKHAQ---HTT 237
Query: 552 SLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPN 611
L L G+R V SET E + A++K TGGD +TAR + + + P + IV N
Sbjct: 238 DLAMLKGARFVSASETQEGRAWDEARLKSFTGGDAITARFMHRDNMTFVP-TCKITIVGN 296
Query: 612 KHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGL 671
+R D+A RR ++PF + A D +KL + +W + G + GL
Sbjct: 297 HKPKIRTVDEAMRRRLNIVPFIRKPAEPDPDLERKLLAEL-PGILRWPIDGCLDWQEHGL 355
Query: 672 DVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRK 731
P+ L A +E D + W++D C + + Y+ + + +
Sbjct: 356 IR--PDAVLAATDEYLADEDLFGQWVEDRCKVDPGNRQMRTPNQDLYASWCDFAERVGAR 413
Query: 732 RISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGL 769
+ + L + G + R +G+
Sbjct: 414 HGTLHELGEKLSKLGLA--------RYKSGGVRGFEGI 443
>gi|327409707|ref|YP_004347127.1| putative primase [Lausannevirus]
gi|326784881|gb|AEA07015.1| putative primase [Lausannevirus]
Length = 902
Score = 310 bits (793), Expect = 8e-82, Method: Composition-based stats.
Identities = 124/654 (18%), Positives = 231/654 (35%), Gaps = 85/654 (12%)
Query: 185 VKDKKSIIPSKTWT--NNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRG 242
K K+ KT + + T+ I L+ E ++D+W+ V + + G
Sbjct: 276 AKKKRPTRLVKTMEQIMEDIKMVTDSGILGMLNDSRAE----NYDDWMNVGWTLFNIGNG 331
Query: 243 SSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEE--IGDTAKKRSTFTSLFY-------H 293
+ ++ +S + S +DE+ Y W+ + + IG + Y
Sbjct: 332 LPEALDLWIDFSSRASNFDEKKCEYVWEQMEMKGKGIGSLLQMAKNDNPEKYAEWKTLKC 391
Query: 294 HGKL--------IPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWS 345
L +A Y+ K + Y + W K D N
Sbjct: 392 KDDLDAAIKCPKPTHANIAKLIHTKYSDRFICADAKSNIWYEFRSHRWNKLDDAN----- 446
Query: 346 LTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKST 405
+ I+ + + + +S + D N R + + +
Sbjct: 447 ELMRIISFELPDIFRLEIARLSAISSQGTDPNAQLTMKRCLDMQAKLQMDSFATGVMRMC 506
Query: 406 AQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP 465
+ + LD + +G +DG++DL+ G + + YI+ STG + E
Sbjct: 507 KRLFLNEKFL----EKLDENRDIIGMEDGVVDLKLGIFRDGSPDDYISMSTGISYREFSE 562
Query: 466 SQ----EFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLI 521
+ E + + F + ++ R V + GGN+ +R G G +GK+ NL+
Sbjct: 563 TDRAVVECREFLRKLFPNPKIRKCAIRMVSSCMQGGNRNKRIYVCTGKGHNGKTVFFNLL 622
Query: 522 KYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM 581
+Y FG QY+I + R A A P L R G+R +I E ++ +++N +K++
Sbjct: 623 EYIFG-QYLIKFPREMCLVGRTASASSARPELARAPGARFAVIQEVHKGEKLNPGILKEL 681
Query: 582 TGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI----- 636
+G D R Y P FT F++ NK V D A W R I F+
Sbjct: 682 SGNDSFFVRSLYEKGRDVKP-QFTIFMMCNKPPSVPGSDQATWNRLRAILFESTFLSEQD 740
Query: 637 -------ANR--------DASFAQKLETKYTLEAKKW-FLKGVKAYISKGLDVDIPEVCL 680
R D F +K+ A W ++ +AY +GL PE
Sbjct: 741 DLWIDDPEERKRLHMFKADPHFEEKI--PELAHALFWICMQDFRAYKEEGLC--EPEEVT 796
Query: 681 KAKEEERQGTDTYQAWIDDCCDI----------GENLWEESHSLAKSYSEYREQELN-YD 729
+ R D + +I DC + E + L +Y E+ ++ Y
Sbjct: 797 MTTNKMRARNDPIRRYIRDCVEKIDKEELDGEDEEIPYVTVSELFNNYKEWYDENFPSYS 856
Query: 730 RKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDNSN 783
K+++ + + ++ + + + +L+ E ++D +
Sbjct: 857 AKKVTILKFRKQISRA----------LKVQPVGGKKFEYYRLR-EQEDLEDENG 899
>gi|298249763|ref|ZP_06973567.1| phage/plasmid primase, P4 family [Ktedonobacter racemifer DSM
44963]
gi|297547767|gb|EFH81634.1| phage/plasmid primase, P4 family [Ktedonobacter racemifer DSM
44963]
Length = 480
Score = 304 bits (779), Expect = 3e-80, Method: Composition-based stats.
Identities = 93/473 (19%), Positives = 179/473 (37%), Gaps = 39/473 (8%)
Query: 308 SDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVF 367
D N F + FL+ + W N W + ++ + LV + +
Sbjct: 25 DDGGNADTFEVLYGSDFLHVPELG-WLHY---NGKFWEQDRAALVRAVEDTLVQRRLEAV 80
Query: 368 DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSR 427
+E +++V A + S + + D++
Sbjct: 81 RCDKEK--------------IVGVTKRDVFRIDGATKLLE-----SRLNADIEDFDNNPD 121
Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVS------GYFESEE 481
L +G+++L TG T + T + S E+ +S G E +E
Sbjct: 122 LLNVANGVVELSTGDLAPHDPSQRFTYALATDYDPMADSSEWEAFLSQAVTPDGQEEDKE 181
Query: 482 VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQN 541
++++ + VG ++ G + +R ++ G SGK T + + + +
Sbjct: 182 LLNFIQQAVGYSVTGHTREERLFYVYGPTRSGKGTFTESLMTLVPRPLSMEVDFNTFTAR 241
Query: 542 RPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESP 601
R + N L + SR++ SE+N+ +N KIKQ+TGG+ + A + +S P
Sbjct: 242 R--DGNDQNFDLADMKPSRLIFASESNKYQSLNPGKIKQLTGGNWVQAAFKHKQRFSYRP 299
Query: 602 ASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF-DKPIANRDASFAQKLETKYTL-EAKKWF 659
+ ++ N + DDA W R +V+ F + D S +L+ KW
Sbjct: 300 -QYAVWLSSNHKVMGDPEDDALWYRVLVVEFPNSHKGKEDTSLKARLKQPEAQRGILKWV 358
Query: 660 LKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYS 719
+ G + + + +PE A + R D WI+D + + S L +SY
Sbjct: 359 VDGAFNWYAT-ERLQVPEGVKLATQAHRDDLDNIALWINDEVIEEDGAFASSAELYQSYK 417
Query: 720 EYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIE-KEWKSKRIIKGLKL 771
+ E +K +R + L LK++G+ +E + K R +G+++
Sbjct: 418 PWCEDNGVEPKK---SRELGLALKKRGYEDSKDYILLENGKRKQVRGWRGVRV 467
>gi|148257830|ref|YP_001242415.1| putative phage / plasmid primase P4 [Bradyrhizobium sp. BTAi1]
gi|146410003|gb|ABQ38509.1| putative Phage / plasmid primase P4 [Bradyrhizobium sp. BTAi1]
Length = 624
Score = 303 bits (776), Expect = 8e-80, Method: Composition-based stats.
Identities = 81/518 (15%), Positives = 156/518 (30%), Gaps = 76/518 (14%)
Query: 308 SDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIW----------SLTLDKITASIM- 356
+D N + ++ D W+ + ++I
Sbjct: 82 NDTGNGKRLLQWFGADLVHVRDMG-WHAWVGTHWEREGGIEAATRCAQKVAERIVLEADV 140
Query: 357 -------NFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYR----------------- 392
+ D + E + R
Sbjct: 141 MAATPNEQKAIDAASQARDAAGAIEAAKGAEARKDQRWQMLMRVVAAGEAAQTALASRQV 200
Query: 393 ---RQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILD------------ 437
+ + + AK +A +I D LD+ ++G L
Sbjct: 201 ARRKYAISSGNAAKVRNMLDQAMPHHTIEIDKLDADKLAFNVRNGTLCFVADEMPDPDAS 260
Query: 438 ------LETG--QKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRC 489
L+ + + + Y+TK + F + + S ++ + R
Sbjct: 261 DHSNQVLKRWRVEFREHNRADYMTKVAPVDYDPKAKCPTFDASLRRFQPSADIRRFLQRY 320
Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549
G AL G Q I G G + KST + L+ G Y I + +A
Sbjct: 321 HGYALTGLTGEQCLIFNYGGGSNWKSTFVELMCRISG-PYAQTIPFESISGDVQKSGSQA 379
Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609
+P RL G R++ E + N + IK +TGG+ M R N+ + + P F +
Sbjct: 380 SPEFARLPGCRLLRAGEPDPNVQFKEGLIKSLTGGEPMLTRANFKDFFEFRP-DFKIVLS 438
Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLE---AKKWFLKGVKAY 666
N + D WRR ++P+ IA+ + + + E W + G Y
Sbjct: 439 GNHKPKISGVDHGIWRRINLVPWGITIADHEKRPMPDVLAELMAEASGILNWLVAGTLNY 498
Query: 667 ISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDI-------GENLWEESHSLAKSYS 719
++ GL P + A R+ D A++ C + + + + ++
Sbjct: 499 LNGGLKP--PPEVVAATAAYRERMDPVGAFVGQCVTVLPPPAAHAGAAFVPARQMYGAFV 556
Query: 720 EYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIE 757
+ ++K + +++KGF +
Sbjct: 557 AWCSVN---EQKPWGEKAFAGVMEEKGFERHRSNAGMR 591
>gi|107022397|ref|YP_620724.1| hypothetical protein Bcen_0842 [Burkholderia cenocepacia AU 1054]
gi|116689345|ref|YP_834968.1| P4 family phage/plasmid primase [Burkholderia cenocepacia HI2424]
gi|105892586|gb|ABF75751.1| Phage-plasmid primase P4-like protein [Burkholderia cenocepacia AU
1054]
gi|116647434|gb|ABK08075.1| phage/plasmid primase, P4 family [Burkholderia cenocepacia HI2424]
Length = 526
Score = 302 bits (773), Expect = 2e-79, Method: Composition-based stats.
Identities = 90/543 (16%), Positives = 179/543 (32%), Gaps = 70/543 (12%)
Query: 254 SKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFS----- 308
+ D F+ F + G P + +R S
Sbjct: 19 AASALEADARMFDELRRAFLAKGNGTNGHAAKPKHPRGKDGRMTAPLDAIPARLSGEIAA 78
Query: 309 -----DAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMK 363
+ +F+ +G L+ W++ + + ++T ++ V
Sbjct: 79 TVELSEDAVAVVFASAYQGRLLFETLRGKWFRW--EDTHWKQDEGARVTREMIRRTVRKM 136
Query: 364 EDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLD 423
+ K R T S+ D
Sbjct: 137 CRGEPRWLTARVVDAIEKLARTDERTC---------------------------PSEPFD 169
Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLV---------- 473
++ L G++DL G E +T+ TG G + +
Sbjct: 170 ANPWLLATPAGVVDLRDGSSRAARPEDMMTRVTGCAPDFGGDCPRWRAFLGACIHGFDEY 229
Query: 474 ---SGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530
+E++ + R G L G + + + G G +GKST + +++ G+ Y
Sbjct: 230 GEPRSAPPGDEMVRFLQRMCGYFLTGSTRFEFVFLLFGGGANGKSTFLRVLREILGD-YF 288
Query: 531 INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR 590
++ +Q+ + + + G+R+ E +N N+ ++K ++ G+ ++AR
Sbjct: 289 VSVAVETFLQS---AHDQHPTGMAHIEGARLAACGELPDNRSWNSQRVKDISSGEKISAR 345
Query: 591 LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDASFAQKLE 648
+ Y P V N VR +A RR+ +IPF + RD++ L
Sbjct: 346 HMRQDFYDFVPVC-KLLFVGNHRPRVRQTGEAEKRRFRIIPFVHKVPENRRDSTLEDALR 404
Query: 649 TKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLW 708
+Y W L G KA I++G +P KA + DT+ W + + ++
Sbjct: 405 EEY-PAILAWMLDGAKAVIAEGFA-SMPGAVTKATNDYFAENDTFALWAGERLLLHKDYS 462
Query: 709 EESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKG 768
+ +Y+ + E Y+ + +S+R + ++ G R+ +G
Sbjct: 463 VPAGVAYANYTRWFEG-GGYEGRPVSSREFKMRMEDMG--------ATHDRDNRGRLYRG 513
Query: 769 LKL 771
KL
Sbjct: 514 AKL 516
>gi|320166048|gb|EFW42947.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 766
Score = 302 bits (772), Expect = 2e-79, Method: Composition-based stats.
Identities = 111/560 (19%), Positives = 214/560 (38%), Gaps = 56/560 (10%)
Query: 177 FQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAF--------LSCFGEEFYNGSHDE 228
Q T+ + + + ++ + + R++ + + G E+YN + +
Sbjct: 216 LQSDTIDALTAEAAEKRAQQRAARQIARGSERQLKHWFEEAEEILMDHLGPEYYN-DYQK 274
Query: 229 WIPVVMAVHHETRGSSKGKEIARRWSKQGSTYD-EENFNYKWDTFDFEEIGDTAK---KR 284
W V+ + +++ ++ +R+S Q + +E F+ W+ + G T K K
Sbjct: 275 WFNVLAVIKTVFGDTAEAYDLCKRFSAQAGNKEWDEKFDGFWERNLCADNGWTMKTLYKM 334
Query: 285 STFTSLFYHHGKLI--------PKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKK 336
+S + K+I LLA D + +LY W
Sbjct: 335 VGGSSKLKCNEKVINNLGDDQRDAELLAMLLEDRLTSVSVQEKEAEFYLYDEAEALW--- 391
Query: 337 DKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNV 396
K ++ MN LVS + E K S++ + ++
Sbjct: 392 ------------KKKVSTQMNVLVSQTMQKYLQGWIDEYKCKISEASQLAEEKIDQKTR- 438
Query: 397 EENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQD-GILDLETGQKVKPTKELYITKS 455
++ + Q+L + F + LDS+ L D ++DL G+ KE Y + +
Sbjct: 439 KKAAAITHKLQTLLYDAQFKVK---LDSAENLLPIADRKVVDLTNGEVRDRMKEDYFSLA 495
Query: 456 TGTPFVEGEPSQEFLDLVSGYFES-EEVMDYFTRCVGMALLGGNKAQRFIHIRGV-GGSG 513
+ G+ + S + ++ +G +L G NK+ + G G +G
Sbjct: 496 LSVSYEPGKGTAVADKFFSEIMLDRADRIEQLRLSLGYSLFGHNKSNLMFFLYGPDGSNG 555
Query: 514 KSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI 573
KS L+N++ G + I + R ++ A+P ++L+G R+ +SE E +
Sbjct: 556 KSLLLNILTEIVGEFRATVDPSIIIGKTRLDQS--ASPYTMQLIGKRLGFMSELPEESVL 613
Query: 574 NAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFD 633
N A +KQ+TG D MTAR NYGN + S + N +++ + WRR ++ FD
Sbjct: 614 NEAMVKQLTGADVMTARQNYGNAFEFS-CYAKMLLATNYLPNMKD-SPSLWRRVRMVKFD 671
Query: 634 KPIANRDASFAQKLETKYTLEA--------KKWFLKGVKAYISKGLDVDIPEVCLKAKEE 685
+K+ Y + W + G Y +KG +++P +
Sbjct: 672 ACFVENPTGSQKKINVNYMRDIAKPNINQFFTWMVNGAIEYSNKG-TIEVPADITAFIKG 730
Query: 686 ERQGTDTYQAWIDDCCDIGE 705
R ++ + +ID C +
Sbjct: 731 LRLKSNPVKLFIDKCVVFDK 750
>gi|300023255|ref|YP_003755866.1| phage/plasmid primase, P4 family [Hyphomicrobium denitrificans ATCC
51888]
gi|299525076|gb|ADJ23545.1| phage/plasmid primase, P4 family [Hyphomicrobium denitrificans ATCC
51888]
Length = 401
Score = 302 bits (772), Expect = 2e-79, Method: Composition-based stats.
Identities = 82/369 (22%), Positives = 131/369 (35%), Gaps = 34/369 (9%)
Query: 304 ASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMK 363
S FSD F+ Y + Y A W W T + + +
Sbjct: 63 PSGFSDEALALDFAHYHRDDLRYVAIWGKWLLWSGTQ---WRADD---TLMAFDLVRHVC 116
Query: 364 EDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLD 423
D + + + + +A + TSD D
Sbjct: 117 RDAAARCKTER-----------------LSTTIASAKTVAAVERLAKADRRLAATSDQWD 159
Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE-SEEV 482
+ + L G++DL TG Y T+ T G F D ++ +E+
Sbjct: 160 ADAWALNTPAGLVDLRTGILKPSLPSDYNTRLTTV--APGGSCPIFRDFLNRITGGDKEL 217
Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542
+ R G AL G + + G G +GKS L+ I G+ Y A +
Sbjct: 218 QKFLQRAFGYALTGSVQEHALLFFYGTGANGKSVLLKTISDILGD-YHQQAPIETFTASI 276
Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602
+ L L G+R+V ET E A+IK +TGGD ++AR + + P
Sbjct: 277 HQ---RHETELAALRGARLVTAVETEEGRRWAEARIKTLTGGDKISARFMRQDYFQFDP- 332
Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIVIPF--DKPIANRDASFAQKLETKYTLEAKKWFL 660
F I N +R D+A RR+ ++PF P A RD KL++++ KW +
Sbjct: 333 QFKLVIAGNHKPGLRTVDEAIRRRFHLVPFAVTIPPAERDPDLTTKLQSEW-PGILKWMI 391
Query: 661 KGVKAYISK 669
+G + +
Sbjct: 392 EGCLEWQRR 400
>gi|84684071|ref|ZP_01011973.1| hypothetical protein 1099457000262_RB2654_16521 [Maritimibacter
alkaliphilus HTCC2654]
gi|84667824|gb|EAQ14292.1| hypothetical protein RB2654_16521 [Rhodobacterales bacterium
HTCC2654]
Length = 602
Score = 300 bits (769), Expect = 5e-79, Method: Composition-based stats.
Identities = 97/538 (18%), Positives = 185/538 (34%), Gaps = 77/538 (14%)
Query: 308 SDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLD------------------ 349
+D N F I+ ++ W+ +W D
Sbjct: 48 NDYGNGQRFIIHFGDDLMFVP-RVGWFTWTG---AVWQADPDELEVRRRAQQIGPLILEE 103
Query: 350 -----------------------KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFW 386
++ + + +L+E ++ S++ +
Sbjct: 104 LDYLRLPQVQMDLIAEEDVLVLRRVEIEAIPAKDRSSDQATELTELRLKLDRISEAKKKL 163
Query: 387 --FNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILD------- 437
RR+ V+ + E+ + ++ + LD++ + G++
Sbjct: 164 SERRAARRRKAVQAGNSGPIDHMVAESQTSLAVPLEQLDAAPFDVNCLSGVVQSRVTEEP 223
Query: 438 LETGQ--------KVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRC 489
+ G+ V +E +TK + + F ++ ++ + R
Sbjct: 224 TDDGRKIRYAQVDLVPHAREQRLTKIMPVEYDPDATAPGFEKFLTRVLPDPDIRAFLQRW 283
Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549
G+A+ Q + + G G +GKS L+++I G+ Y A + G A
Sbjct: 284 FGVAMTAE-PLQNMVFLFGSGANGKSVLVDIISRVLGD-YGATARIESLTGTNRRGGGDA 341
Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609
P LI L+GSR V SE +E + IK+ TGG+ + R + + P F +
Sbjct: 342 TPDLIPLIGSRHVRTSEPDEGMRLQEGLIKEWTGGEPILVRALHSDFIVVLP-KFKLTMS 400
Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDK--PIANRDASFAQKLETKYTLEAKKWFLKGVKAYI 667
N +R DD WRR++++PF + P+A RD KL + +W + G+ +
Sbjct: 401 GNHKPDIRGTDDGIWRRFLMVPFTEQIPVAERDPHLVDKLW-EERDGIFQWLIVGLNQFQ 459
Query: 668 SKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDI--GENLWEESHSLAKSYSEYREQE 725
GL P+ + A E R D ++ C + S L ++++ + +
Sbjct: 460 EIGLSP--PDAVVAATAEFRAEQDPVGDFLATCTVVTGRPEDTVTSSRLVEAFTFWLMKN 517
Query: 726 LNYDRKRISTRTVTLNLKQKG--FIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDN 781
K TV+ L K + + K S G++L F DN
Sbjct: 518 GQGAWKP---TTVSRRLSDKAERWRHPNGGQSFTKRKASTVFYDGIRLTEVFARDLDN 572
>gi|297660619|ref|YP_003710330.1| phage/plasmid primase [Waddlia chondrophila WSU 86-1044]
gi|297377495|gb|ADI39324.1| phage/plasmid primase [Waddlia chondrophila WSU 86-1044]
Length = 683
Score = 295 bits (755), Expect = 2e-77, Method: Composition-based stats.
Identities = 101/494 (20%), Positives = 179/494 (36%), Gaps = 40/494 (8%)
Query: 293 HHGKLIPKGLLASRFS--DAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDK 350
H + + R + ++ + +F + +L+ + W+L + K
Sbjct: 217 HEKEKTENEKVLERLNKNESGDAEIFVELFEKKYLFDPTEGKNGAFYLWDGCQWTLDIHK 276
Query: 351 ITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLE 410
+ E +K T RR NV E A + +
Sbjct: 277 ERYKDFEKVSDTYLIATSDESIDESVSKELFKRSQQLRTSRRRSNVLETVSAYLSFKHS- 335
Query: 411 AGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFL 470
D L +GI++L+TG +E YI K T + + +FL
Sbjct: 336 -----------WDYCPNKLPCSNGIINLKTGDLETAQRENYIKKVCPTSYEKNANCPKFL 384
Query: 471 DLVSGY-FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529
+ +E+ + R +G ALLG K ++ + G G +GK TLM++I++ G
Sbjct: 385 KFLDDITLGDKELSSFIGRVIGYALLGVPKEEKIFYFYGNGRNGKGTLMHVIQHVLGALS 444
Query: 530 VINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTA 589
+ Q PP + NP L L G R+ + SE NE +I++AK+K ++G D +
Sbjct: 445 KTFPSEMLLSQRNPPSSSSPNPELANLEGVRMAVFSEINEGRKIDSAKVKNLSGRDIIPC 504
Query: 590 RLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDAS------- 642
R Y N + + T + N + D A W R I+IPF
Sbjct: 505 RRLYSNVDLQITPTHTMILQTNYKPKAPSEDKALWSRNILIPFKARFVKEPKDGENEREI 564
Query: 643 ---FAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD 699
+L + KW + G Y GL +P+ + E R+ D ++++
Sbjct: 565 KESLKDELL-EEAKGILKWMVDGCLEYQEIGLK--VPQSVIDQTEGYRKENDGIGCFLEE 621
Query: 700 CCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKE 759
C + + + + Y + + K + ++ LK + F G K
Sbjct: 622 MCFQDPAVSTQKSKMEAAIKNYCKAN---EMKEPTRNEISDYLKIR-FKEGRK------- 670
Query: 760 WKSKRIIKGLKLKP 773
KG+K++
Sbjct: 671 -SQGSYWKGIKIED 683
>gi|254781190|ref|YP_003065603.1| hypothetical protein CLIBASIA_05485 [Candidatus Liberibacter
asiaticus str. psy62]
gi|254040867|gb|ACT57663.1| hypothetical protein CLIBASIA_05485 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 233
Score = 294 bits (752), Expect = 5e-77, Method: Composition-based stats.
Identities = 132/233 (56%), Positives = 169/233 (72%)
Query: 41 LSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKP 100
+ + +D GFG +CG+G P+YAFD+D DE+ + F + F+ G PI R+GQ P
Sbjct: 1 MVATDVDHYVYNGFGILCGIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCGKPISRVGQAP 60
Query: 101 KILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVE 160
K L+ FRM + +KK+K+ E QGHL+ L GQ FVAYNIHPKT++ YTW+ PH KVE
Sbjct: 61 KTLMLFRMQETNLKKQKSEEKIQGHLEFLAYGQQFVAYNIHPKTQRAYTWSIAPHALKVE 120
Query: 161 DTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEE 220
+ PLL+ ++VEY F+FF IT P K+K SK W ++NNR+YTN EI AFLSCFGEE
Sbjct: 121 ELPLLTPDEVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFGEE 180
Query: 221 FYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFD 273
FYNGSHDEWIPVVMA+H+ETRGS++GKEI R W K G TYDE++FN KWD+FD
Sbjct: 181 FYNGSHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSFD 233
>gi|153810987|ref|ZP_01963655.1| hypothetical protein RUMOBE_01378 [Ruminococcus obeum ATCC 29174]
gi|149832875|gb|EDM87958.1| hypothetical protein RUMOBE_01378 [Ruminococcus obeum ATCC 29174]
Length = 385
Score = 293 bits (750), Expect = 8e-77, Method: Composition-based stats.
Identities = 72/389 (18%), Positives = 148/389 (38%), Gaps = 20/389 (5%)
Query: 406 AQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETG---QKVKPTKELYITKSTGTPFVE 462
+A + + LD L ++ +LDL +G ++++ +L ++K +
Sbjct: 9 VMVTDAKDLNFFDNTELDKDDFLLNCKNCVLDL-SGDQPKELEHKADLLLSKICNANYNP 67
Query: 463 GEPSQEFLDLVSGYFESEE-VMDYFTRCVGMALLGGNKAQRFIHIRG-VGGSGKSTLMNL 520
+ V+ + + ++Y + G L G + F G +GKST+ L
Sbjct: 68 AATCTLWEKTVNEIMQGDSSKIEYLQKMSGRFLTGDTSEEEFYIFFGATTRNGKSTITEL 127
Query: 521 IKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQ 580
+ Y G+ Y + ++ A+P + +L G+R V+ SE +++ +K
Sbjct: 128 LLYLLGD-YATTISPESLAIKVNKDSRTASPDIAKLAGTRFVVASEPPRRMLFDSSLVKT 186
Query: 581 MTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD 640
+TG D ++AR + N + P F + N + + R V+PF++ ++
Sbjct: 187 LTGRDTVSARFLHENEFQFKP-KFKLILNSNYLPVISDKTVFSSNRVKVVPFERHFTEKE 245
Query: 641 --ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID 698
++L+ + W ++G+ Y +GL+ P A E + +D +I
Sbjct: 246 QNKHLKEQLQQEI-DGILNWCIQGLSLYRKEGLEP--PTAVQIATHEYSEDSDKIGKFIS 302
Query: 699 DCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEK 758
+C + + + + + YS++ R S LK K + +
Sbjct: 303 ECLEKSDQNLA-AKDVYEKYSQWCNDCGLGVDGRTS---FYEELKTKNLLS---KTGTVT 355
Query: 759 EWKSKRIIKGLKLKPAFESVDDNSNIIDF 787
K +IKG D + F
Sbjct: 356 GKTVKNVIKGYSFVDETFHPVDGNFDTPF 384
>gi|322511112|gb|ADX06425.1| putative VV D5 family helicase [Organic Lake phycodnavirus 2]
Length = 824
Score = 292 bits (746), Expect = 2e-76, Method: Composition-based stats.
Identities = 121/577 (20%), Positives = 239/577 (41%), Gaps = 69/577 (11%)
Query: 217 FGEEFY-NGSHDEWIPVVMAVHHETRGSSKGKEI-ARRWSKQGSTYDEENFNY---KWDT 271
E +Y GS+++WI V MA+ + +S+ I + S Q ++D N + KW+
Sbjct: 250 LDESYYGEGSYNKWIKVGMALKN----TSEKLFISWLKISSQSPSFDWGNVSELFHKWNH 305
Query: 272 FDFEEIG----------DTAKKRSTFTSLF---YHHGKLI--PKGLLASRFSDAYNKAMF 316
FD ++ + +K + + Y H L+ LA+ + Y +
Sbjct: 306 FDERDLSYRSIIYWAKESSMEKYNEVRNKSLDKYIHNSLMNVTHWDLANTLNQIYKENYK 365
Query: 317 SIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDN 376
+ K Y+ + W + D + +L K ++ ++ SEE ++
Sbjct: 366 CVNIKHSVWYSFEENRWIENDSG-TSLRNLLSTKFYNIYFKYVQKRLKEGNKDSEESKNI 424
Query: 377 NKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGIL 436
N F + + E+N+ K + + + + LD++ +G ++G++
Sbjct: 425 AGN-----FSKLAKCLKTSSEKNNVMKESCELFYDKEFY----NKLDTNPYLVGCKNGVV 475
Query: 437 DLETGQKVKPTKELYITKSTGTPFVE----GEPSQEFLD----LVSGYFESEEVMDYFTR 488
D++ + K ++ YI K+T ++ E S E +D + F +++ +Y
Sbjct: 476 DIKQKEFRKGSQNDYIHKTTNIDYMPLQHYQEVSPEIIDELNTFMYQLFPEQDLREYMWE 535
Query: 489 CVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGK 548
+ L+G N Q F GVG +GKS L++L+ G+ Y ++ I Q R G
Sbjct: 536 HLASTLIGTNNNQTFNIYLGVGANGKSILVDLMSKILGD-YKGTVPSTLITQKRT-SIGS 593
Query: 549 ANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFI 608
+ + +L+G R ++ E ++ D IN +K++TGGD + R + ++ + P F +
Sbjct: 594 TSSEVYQLIGRRYAVMQELSKGDTINEGIMKEITGGDPIQCRALFKDSVTFIP-QFKLVV 652
Query: 609 VPNKHLFVRNPDDAWWRRYIVIPF----------DKPIANRDASFAQKLETKYTLEAKKW 658
N V++ DD WRR V F D+ +D + K++ + K W
Sbjct: 653 CTNVLFDVKSNDDGTWRRIRVCEFKSKFTDHPYEDRAFPEKDYPYQFKIDKNLNQKFKYW 712
Query: 659 F-------LKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENL---W 708
++ KA+ ++G +D P L+ E R+G D + N
Sbjct: 713 APVFFSMLVE--KAFQTQGKVIDRP-CVLEPTENYRKGQDVILEFCHSQIVEEPNDALGS 769
Query: 709 EESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK 745
+ + ++++ + E IS+R + L++K
Sbjct: 770 LKIGMVNTIFNDWFKNEYGKTSH-ISSRELREYLEKK 805
>gi|239908831|ref|YP_002955573.1| hypothetical protein DMR_41960 [Desulfovibrio magneticus RS-1]
gi|239798698|dbj|BAH77687.1| hypothetical protein [Desulfovibrio magneticus RS-1]
Length = 478
Score = 290 bits (743), Expect = 5e-76, Method: Composition-based stats.
Identities = 81/412 (19%), Positives = 164/412 (39%), Gaps = 29/412 (7%)
Query: 308 SDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVF 367
++ + + K F Y K WYK + + W + + ++ +V ED+
Sbjct: 44 NEVGDAGFYVEANKNKFCYDCSDKKWYKYNNTH---WEIDVKNSYLEAVSKVVDAYEDIK 100
Query: 368 DLSEEP-------EDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAG-SIFSITS 419
+ E+++ D+R ++ + +S +G + +I
Sbjct: 101 SIFRAKAFKEMAFENSHGVKAVDAHLKKLDFRISSINTMKRMRSILTIAGSGENSLAIRG 160
Query: 420 DLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGE-PSQEFLDLVSGYFE 478
D D+ L Q+ ++DL+TG+ +K + Y+ + + + + F+
Sbjct: 161 DEWDNKPMVLCCQNKVIDLKTGKSIKSDPKDYLKSFAPVEWKGLSCKAPIWNKFLMSMFD 220
Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
+E++DY R +G +L G G G +GK TL ++ G+ +
Sbjct: 221 NDKEMVDYVLRLLGYSLTGMCTEHILPIFYGEGRNGKGTLFEVLSEVLGSLAEPFSHDLL 280
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
+ +P + +P ++ L G RI SE ++++ +N A +K++TG D + R +G+
Sbjct: 281 LKLKKPRNSSDPSPDIMDLRGRRIAWASEIDDSENLNPAIVKRLTGNDTLKGRHLFGDLV 340
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI---------ANRDASFAQKLE 648
S P + F++ NK + D A W R ++ + RD +KL
Sbjct: 341 SFKP-THQLFLLTNKKPKADSKDYALWSRIQLLKLNVKFVDNPSCDSERKRDNHLKEKLL 399
Query: 649 TKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDC 700
++ ++G + +GL P+ L E R+G + I+D
Sbjct: 400 SE-KSGILASLVRGCLQWQEQGLCP--PKKVLDDSLEYRKGE---ASDINDH 445
>gi|303326922|ref|ZP_07357364.1| phage/plasmid primase, P4 family [Desulfovibrio sp. 3_1_syn3]
gi|302862910|gb|EFL85842.1| phage/plasmid primase, P4 family [Desulfovibrio sp. 3_1_syn3]
Length = 540
Score = 290 bits (741), Expect = 8e-76, Method: Composition-based stats.
Identities = 94/538 (17%), Positives = 181/538 (33%), Gaps = 48/538 (8%)
Query: 270 DTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTAD 329
D E AK + + + L +R D ++ + +Y
Sbjct: 14 QRRDAETKKRDAKVKPVAVKQLEISDEHLLGYLNENRVGD---AKLYCRLHRDTVIYV-- 68
Query: 330 TKAWYKKDKNNVYIW-SLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSP-RFWF 387
K W + + W + I E ++ +K K +
Sbjct: 69 -KYWERFLIWGGHHWIEDDYEAAFQRIEEVCELYLRLAEHKQTEADEADKEDKPKIQSLV 127
Query: 388 NTDYRRQNV--EENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVK 445
+ RR N+ + N + K + +D +G++DL TG+
Sbjct: 128 DAALRRVNLLRDTNGQEKLMLMVRRIRDPLVVLPKHIDQRHYVKACPNGVIDLRTGELRP 187
Query: 446 PTKELYITKSTGTPFVE-----GEPSQEFLDLV-SGYFESEEVMDYFTRCVGMALLGGNK 499
E YI + T + +P E + S +E++D+ R +G L+ +
Sbjct: 188 GRPEEYILNAIVTEYDPALLEQDDPCPETNKFLLSSMDGDQELVDFIWRLLGYGLVTERR 247
Query: 500 AQRFIHIRGV-GGSGKSTLMNLIKYAFGNQYVINAEASDIMQ-NRPPEAGKANPSLIRLM 557
F G G +GK TL+ L+ + G + +Q + + +P ++ L
Sbjct: 248 DHIFTIFWGEHGRNGKDTLIKLVTHVLGQTLSGDVPVEMFLQMQQTRNSSAPSPDVLALR 307
Query: 558 GSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVR 617
G + I+E E AK+K++TGG +TAR + + P + N+ +
Sbjct: 308 GMCLAWINEAEEGQRFALAKLKKLTGGGYVTARGLQDKQQTTWLQTHLPIMTTNELPKAK 367
Query: 618 NPDDAWWRRYIVIPFDKPIANR---------DASFAQKLETKYTLEAKKWFLKGVKAYIS 668
D A+W R +++ + D +K+ + ++G Y+
Sbjct: 368 ADDAAFWARAVLVKWPLSFVEEPQQPYERPADKDLNEKICAEAK-GVLARMVRGCMEYLR 426
Query: 669 KGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGEN--------LWEESHSLAKSYSE 720
GL IP+ E+R D +I D C+ + S L +++
Sbjct: 427 DGLK--IPDKVKNWTREQRASWDDVGLFITDWCEQESHQDNPDAYATRISSTDLHEAFCI 484
Query: 721 YREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESV 778
+ + + R IS + L +K I + + G++L E+
Sbjct: 485 WYARNRD-KRFSISAKKFAEMLNKK---------DIPYKRSNGSWRLGIRLNAEGENA 532
>gi|260459539|ref|ZP_05807793.1| phage/plasmid primase, P4 family [Mesorhizobium opportunistum
WSM2075]
gi|259034341|gb|EEW35598.1| phage/plasmid primase, P4 family [Mesorhizobium opportunistum
WSM2075]
Length = 329
Score = 287 bits (735), Expect = 4e-75, Method: Composition-based stats.
Identities = 73/318 (22%), Positives = 132/318 (41%), Gaps = 11/318 (3%)
Query: 467 QEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFG 526
EF + + + R G L G Q + G G +GKST ++L+ + G
Sbjct: 2 PEFKKFLIKVQPDPAIRAFLKRFCGYLLTGLTIEQVMLFFYGAGRNGKSTFVDLLCFIMG 61
Query: 527 NQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDC 586
+ Y + + G+A P L RL G+R+V SE ++ A IK +TGG+
Sbjct: 62 D-YAVTLSIDSFSGDNKRGGGEATPDLARLPGARLVAASEPEAGVKLKDALIKTLTGGEK 120
Query: 587 MTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDAS--FA 644
+ R + + + P F + N + + D WRR +++P+ IA D
Sbjct: 121 IPVRRLHKDFFEVDP-HFKIVLSGNHKPRIDDDSDGIWRRLLLVPWTVQIAEGDTDRALP 179
Query: 645 QKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDI- 703
+KL + W ++G Y++ GL +IPE A E RQ +D +I C +
Sbjct: 180 RKLRAEAG-AVFAWMVEGAVDYLNHGL--EIPEGVRAASNEYRQESDAIGTFIRMACHVT 236
Query: 704 -GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIG--GIKREKIEKEW 760
+ E+ L ++ ++ E + R + ++ F G G R+ +
Sbjct: 237 GNPDDKEKPIDLYHAFEKFAASEGVFAFNRSTFEKRFAKSAERSFEGPDGQMRQFQRQRS 296
Query: 761 KSKRIIKGLKLKPAFESV 778
+ +G+ ++P ++S
Sbjct: 297 HGETFYRGIGIRPEWQSQ 314
>gi|163759247|ref|ZP_02166333.1| hypothetical protein HPDFL43_05765 [Hoeflea phototrophica DFL-43]
gi|162283651|gb|EDQ33936.1| hypothetical protein HPDFL43_05765 [Hoeflea phototrophica DFL-43]
Length = 607
Score = 286 bits (732), Expect = 9e-75, Method: Composition-based stats.
Identities = 94/534 (17%), Positives = 176/534 (32%), Gaps = 81/534 (15%)
Query: 304 ASRFSDAYNKAMFSI---YKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIM---- 356
A R + + + K F +W D +N +L L + ++
Sbjct: 89 AKRLLSHFGSDLLVVTQSKAKSPFYAVWTGASW---DTDNGGPRALALAQQLGDLIMMEV 145
Query: 357 -----------------NFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEEN 399
FL ED+ + + + + V
Sbjct: 146 EHLGPTPDEQSALDAGGQFLDKPDEDLGKAETKAKRMAEEAAKTWGKRRAARASFAVGSK 205
Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQD-------------------------- 433
+ AK A A D ++ +
Sbjct: 206 NLAKMNAMLSCAAPHIMRDPDDFNADRYSFATLNHTIKFGRRTVVVPAQSDAQEDGEEIR 265
Query: 434 GILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMA 493
++D+ G ++E IT+ F ++ ++ V +
Sbjct: 266 AVVDVRKG----HSREDLITQLVPVEFDPDAACPKWEAFLTQMLPDPLVRKLVQIAFALG 321
Query: 494 LLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL 553
L+G Q+ G G +GKS M +I G+ V S I ++ G A+P +
Sbjct: 322 LVG-VTVQKLFFHYGSGANGKSVAMEVICRLLGSASVTLPATSFIGESN--TGGSASPDI 378
Query: 554 IRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKH 613
RL G R + + E +++ +K++TGG+ +TAR + + P FTP + N +
Sbjct: 379 ARLYGRRFLRVKELPVGEDLKENLVKEVTGGEAITARDLHQGYFDFDPL-FTPHMSGNGY 437
Query: 614 LFVRNPDDAWWRRYIVIPFDKPI-ANRDASFAQ---KLETKYTLEAKKWFLKGVKAYISK 669
+ D+ WRR V+ + + A++ F + ET++ W + G++ ++ +
Sbjct: 438 PRITGMDNGIWRRMCVVHWPVQLSADQQRDFEDVMGEFETEF-PGILNWLIDGMRMFLEE 496
Query: 670 GLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYD 729
GL IP+ +A ++ R D A+ C I + +Y Y ++
Sbjct: 497 GL--VIPDAVARATQDYRDEMDPTAAFCAACVRIAPGERLTAKDFYHAYVNY---TVDQG 551
Query: 730 RKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDNSN 783
K IS L +K+K E+E G+ L+ D
Sbjct: 552 GKPISLTRFGLIMKRK----------FEREEGRTNHYLGVALENVPRGEGDGGG 595
>gi|162452338|ref|YP_001614705.1| hypothetical protein sce4063 [Sorangium cellulosum 'So ce 56']
gi|161162920|emb|CAN94225.1| phage-related protein [Sorangium cellulosum 'So ce 56']
Length = 458
Score = 285 bits (730), Expect = 2e-74, Method: Composition-based stats.
Identities = 72/365 (19%), Positives = 129/365 (35%), Gaps = 22/365 (6%)
Query: 308 SDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVF 367
SD N + W+ + W + + D
Sbjct: 101 SDLANAERLVALYGPDLRHVEALGGWHTWAGSR---WCCDRATVAELAKETTRRLLTDAE 157
Query: 368 -------DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAK---STAQSLEAGSIFSI 417
+ D+++ +K+ + + A+ + + E I
Sbjct: 158 FAMNHAAKRVKRAHDDDEVAKAKAQHKEATALFNWAKRSQSARGIDAMLRLAETEPIVRA 217
Query: 418 TSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF 477
D+ L ++G+LDL TG+ + + + F + ++
Sbjct: 218 EPGDFDADPWLLNCRNGVLDLRTGELRDHDRRDMMRRIVPVAFDPDAELPVWDRFLADVT 277
Query: 478 E-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEAS 536
EE++ + R G L G + + + G SGKST + +K G +Y A+
Sbjct: 278 GNDEELIGFLRRAAGYTLTGDVRHEVLFFVHGPPASGKSTFLEALKITMG-EYAAKADFE 336
Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNT 596
+ R ++G + RL G+R+V+ E +E + +KQ+TGGD +TAR Y +
Sbjct: 337 TFIARR--DSGGPRNDIARLAGARLVLSIEVDEGKRLAEGLVKQLTGGDTVTARFLYRES 394
Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKY--T 652
+ PA F ++ N VR+ D A WRR + IPF+ + RD L
Sbjct: 395 FEFKPA-FKLWLAANDAPRVRDDDAAIWRRILRIPFEHTVPKEKRDPQVKAALLDPAVGG 453
Query: 653 LEAKK 657
Sbjct: 454 PAILA 458
>gi|254438338|ref|ZP_05051832.1| D5 N-terminal domain family protein, putative [Octadecabacter
antarcticus 307]
gi|198253784|gb|EDY78098.1| D5 N-terminal domain family protein, putative [Octadecabacter
antarcticus 307]
Length = 508
Score = 285 bits (730), Expect = 2e-74, Method: Composition-based stats.
Identities = 96/449 (21%), Positives = 180/449 (40%), Gaps = 27/449 (6%)
Query: 335 KKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQ 394
+ D+ L + FL + + + E + K R Y
Sbjct: 47 RFDRLTGMWCVLDKTDTLQRVSEFLCEVGDAKLEAVEARFRQGEIEKKDRLAAKKLYA-- 104
Query: 395 NVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITK 454
N+ ++ + Q+ + + D D++ LG G++DL TG+ T +T+
Sbjct: 105 NLRSTTRRTAVWQTAVVN-MDAAEVDDFDANPELLGTPGGVIDLRTGEVRSATVGDKVTQ 163
Query: 455 STGT-PFVEGEPSQEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGS 512
ST P G + +L+ +S FE +E +++ R VG AL+G AQ+F + G G +
Sbjct: 164 STDVAPAQAGASASRWLEFLSQVFEGDKETLEFIERLVGSALVGNVSAQKFFVLYGRGSN 223
Query: 513 GKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDE 572
GKS L +++ G+ Y A A MQ+ + + + L G R+V+ SE
Sbjct: 224 GKSVLRDVVSCLVGS-YAGTASAKVFMQSH---SDRHPTEIASLAGKRVVMASEVPAGRS 279
Query: 573 INAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF 632
N A +K++TGG+ MT R + N +S +P T N +A RR ++I F
Sbjct: 280 WNDALLKELTGGEKMTTRWVHQNEFSFTPRG-TLIFTANTLPSFTGAQEAMLRRIVIIEF 338
Query: 633 DKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKG---LDVDIPEVCLKAKEEER 687
+ +D + L + +W + G + +++ G + IP+ A
Sbjct: 339 KRNFTEDEQDPNLVADLISTEGSAILRWAIDGARKFLADGGGVRGLRIPQSITDATRTYF 398
Query: 688 QGTDTYQAWIDDCC-------DIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTL 740
+ D ++ D D + L + + E + + K S RT++
Sbjct: 399 EEEDIVLQFLIDAQGSAATSIDWSPGAFVSCSQLFDEFRRWAESKGH---KSWSVRTLSK 455
Query: 741 NLKQKG--FIGGIKREKIEKEWKSKRIIK 767
+++ + R K + ++ +R +
Sbjct: 456 VIRENAERYELSDVRTKAARGFRVERRLT 484
>gi|311977583|ref|YP_003986703.1| putative helicase [Acanthamoeba polyphaga mimivirus]
gi|160369783|sp|Q5UQ22|YL207_MIMIV RecName: Full=Putative helicase L207/L206
gi|308204253|gb|ADO18054.1| putative helicase [Acanthamoeba polyphaga mimivirus]
Length = 960
Score = 282 bits (721), Expect = 2e-73, Method: Composition-based stats.
Identities = 118/564 (20%), Positives = 209/564 (37%), Gaps = 61/564 (10%)
Query: 225 SHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGS-TYDEENFNYKWDTFDFEEIGDTAKK 283
+ W V + + + E +SK+ + +E W + + T
Sbjct: 378 DYHTWYQVGRCLSNI---DHRLLEDWITFSKKCPSKFKKEECERLWRNMNMKPSNYTMAT 434
Query: 284 RSTFTSL-----FYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADT---KAWYK 335
F S ++ KL GL+ +++ + +K F+Y + WY+
Sbjct: 435 LHYFASKDDPDKYFEMKKLKIDGLIKEGMEASHHTIAKLLIEKYKFIYKCASIKNGIWYE 494
Query: 336 KDKNNVYIW-----SLTLDKITASIM-NFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNT 389
+ W + TL + + ++ N + + +F + + NK K T
Sbjct: 495 F---RNHRWIEIDSAYTLRNLISEVLVNEYANRQRILFGEATRQDAENKKEKFNDAVNIT 551
Query: 390 DYRRQ---NVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP 446
+Q N +N K A + LD ++ +G ++G+ DLE G
Sbjct: 552 KVIKQLNNNTFKNGVIKECADIAYDPNFL----RNLDENNYLIGFENGVFDLEAGIFRDG 607
Query: 447 TKELYITKSTGTPFVEGEPSQEFLD----LVSGYFESEEVMDYFTRCVGMALLGGNKAQR 502
+ I+ T ++E + E + + + +Y + L G N +
Sbjct: 608 CPDDCISLCTNYKYIEIDEDDETFKNINGFLKKIQPDKSMREYILTLLSTCLSGTNSEES 667
Query: 503 FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIV 562
F + G G +GKS LM L+KY G+ Y + + + R + A+P L G R
Sbjct: 668 FYVLTGSGANGKSKLMELLKYTLGDLY-KPMDIRLLTEKRSSSS-SASPELADKKGIRAC 725
Query: 563 IISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDA 622
E +DEIN +K TGGD +TAR Y P F PF++ N+ +++ DD
Sbjct: 726 PFDEPKASDEINTGFMKIFTGGDTITARALYKEPIYFKP-QFKPFLLCNELPTIKSDDDG 784
Query: 623 WWRRYIVIPFDKPIANR-------------------DASFAQKLETKYTLEAKKWFLKGV 663
WRR VIPF D S ++KL + LK
Sbjct: 785 TWRRLKVIPFLSKFIKHSEATKKMKKEGLPKNHFWADTSLSEKLPD-WKQGFMCLLLKYF 843
Query: 664 KAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLW--EESHSLAKSYSEY 721
+ Y GL P++ + E R+ D +Q +I D +N L ++ E+
Sbjct: 844 RKYRKHGLI--HPKLVTQHTVEYRKKCDVFQDFIGDYLVRVDNTKKGISVMDLYQNMREW 901
Query: 722 REQELNYDRKRISTRTVTLNLKQK 745
+ NY K + + + ++ +
Sbjct: 902 --YKSNYTGKCPNAKDLRNYVQHR 923
>gi|319647188|ref|ZP_08001410.1| hypothetical protein HMPREF1012_02449 [Bacillus sp. BT1B_CT2]
gi|317390535|gb|EFV71340.1| hypothetical protein HMPREF1012_02449 [Bacillus sp. BT1B_CT2]
Length = 642
Score = 282 bits (721), Expect = 2e-73, Method: Composition-based stats.
Identities = 106/616 (17%), Positives = 209/616 (33%), Gaps = 67/616 (10%)
Query: 34 GKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDID--SKDEKTANTFKDTFE-ILHG 90
W + + G GF+ + P DID +D + ++ + I
Sbjct: 62 RTWSTFPTVLKFYNDRDYDGIGFMF-SKDDPFIGIDIDHCVEDGVLSPFAEEIVQAISSY 120
Query: 91 TPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTW 150
T G+ + I + ++ + L++ G+YF
Sbjct: 121 TEYSPSGKG--VHIITKGKIPLRGPGTGRKNPELGLEVYRHGRYFTFTGNSLGIGA---- 174
Query: 151 TTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLV--KDKKSIIPSKTWTNNNNRQYTNR 208
+ ++ L E+ ++ + + P +D ++ + W R + ++
Sbjct: 175 ----VEERTDELKELFEKYLKDKKEESKPSNPPAASSRDMSNLSNKEIWE----RMFNSK 226
Query: 209 EITAFLSCFGEEFYNGSH---DEWIPVVMAVHHE---------TRGSSKGKEIARR-WSK 255
+ F N H D + +A + R S +E R S
Sbjct: 227 NGKSIQDLFNGHLINDDHSATDMALCNHLAFWTDKDPAKMDSMFRESGLYREKWDRQHSS 286
Query: 256 QGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHH--------GKLIPKGLLASRF 307
G+TY E + +++ ++ H K I
Sbjct: 287 DGATYGEMTIAAAIYSTHTTISDLLEEQQEQPYEVYISHPNNSQVEDTKEIIDTPPVFHL 346
Query: 308 SDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVF 367
++ N Y + Y + W N W + +I + K
Sbjct: 347 TELGNAERVVYYHGKNIRYCNEL-DWLIW---NGKRWEEDSKRKIEAI-----TAKTLRA 397
Query: 368 DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSR 427
E +K K + R+N+ N L+ + S+ LDS
Sbjct: 398 LYGEAKATEDKFRKKQLNDWAKKCERRNIRMN-------TILDVRPMVSVRKQELDSHKY 450
Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESE------E 481
+G++DL+TG+ + ++L TK + + + + F + E
Sbjct: 451 LFNCDNGVIDLKTGELLPHDRDLLFTKISPISYQPDADCPNWKTFLESIFIDDQGTPNYE 510
Query: 482 VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQN 541
++D+ + +G +L G Q + G G +GKST +N +++ FG+ Y + ++
Sbjct: 511 IIDFMQKAIGYSLTGDTTEQVMFFLFGNGRNGKSTFINTVQHLFGD-YGRQTNSDTFIKK 569
Query: 542 RPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESP 601
+ A N + RL G+R V E+ E +++ + +KQ+TGG+ M+AR + +P
Sbjct: 570 KNDSA--INNDIARLDGARFVSAVESEEGQQLSESLVKQITGGEKMSARFLRQEYFEFTP 627
Query: 602 ASFTPFIVPNKHLFVR 617
F F N V+
Sbjct: 628 -EFKVFFTTNHKPIVK 642
>gi|303245368|ref|ZP_07331652.1| phage/plasmid primase, P4 family [Desulfovibrio fructosovorans JJ]
gi|302493217|gb|EFL53079.1| phage/plasmid primase, P4 family [Desulfovibrio fructosovorans JJ]
Length = 576
Score = 280 bits (717), Expect = 5e-73, Method: Composition-based stats.
Identities = 106/540 (19%), Positives = 196/540 (36%), Gaps = 51/540 (9%)
Query: 286 TFTSLFYHHGKLIPKGLLASRFSDAYN------KAMFSIYKKGHFLYTADTKAWYK---- 335
S I G+ S DA+ A+ +G Y A Y+
Sbjct: 33 PILSEVAPDETEIAPGITVSDVEDAFRWKNVGDAAIAIKLLRGKICYDAVADKPYRFNCT 92
Query: 336 -KDKNNVYIWSLTL----DKITASIMNFLVSMKEDVFDLSEEPEDNNKN----SKSPRFW 386
++ W L D ++L K + + P+D K+ K +
Sbjct: 93 HWLRDKNANWRKALFGVADIYAIRARHYLEQAKTVEEECNAAPKDEQKSLKPLVKKAQKI 152
Query: 387 FNTDYRRQNVEENSK--AKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKV 444
+R N ++ K + +I+ D + L ++ ++DLE G+ +
Sbjct: 153 AEAWIKRVNSCRDTSYVRKIWEAATSGDGSLAISGDEWNQRPTLLPCKNCVVDLEKGKPL 212
Query: 445 KPTKELYITKSTGTPFVEG-EPSQEFLDLVSG-YFESEEVMDYFTRCVGMALLGGNKAQR 502
P Y K+ PFV+ + FLD +S ++++DYF VG A G +
Sbjct: 213 DPDPFQYFNKAAIAPFVDLHAEAPFFLDTISKALCRDKQLIDYFDYMVGFAATGLQT-KD 271
Query: 503 FIHIRGV-GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRI 561
F G G + KS + ++ G+ + + + A +PS+++L G R+
Sbjct: 272 FFCAYGPKGDNAKSVVFEWLRKVLGDFAGTIKVETILDEKFMRSADGPSPSMLKLRGLRM 331
Query: 562 VIISETNENDEINAAKIKQMT-GGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
+ SE ++ + AKIK + GGD + AR E T + N D
Sbjct: 332 AVTSEADKKHQFAMAKIKSICSGGDRLEARGINAVDIIEFNPELTLIMHSNHIPKASGND 391
Query: 621 DAWWRRYIVIPFDKPI-ANRD---------------ASFAQKLETKYTLEAKKWFLKGVK 664
DA+++R VIPF A +D + T+ + ++
Sbjct: 392 DAFYKRIKVIPFRAKFIAEKDGPEDPDHHIYHAKSRSRIVDPTLTREMPGIMAYIVRCAV 451
Query: 665 AYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQ 724
+ G P L ++ R D ++ +C D N E+ + ++ ++ +
Sbjct: 452 KALKAGDMPPAPPAVLIETDQYRTDQDIVGQFLRECTDPDSNNQEQMKDIYFAFRKWCAE 511
Query: 725 ELNYDRKR-ISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDNSN 783
E K S + +LKQ+ ++E+ + KGL++KP + + + N
Sbjct: 512 EQMMPPKAIWSQNALGKDLKQR--------NELERIPSNVTYYKGLRIKPQWRKQEGDIN 563
>gi|196885459|gb|ACG80592.1| primase/helicase [Acanthamoeba castellanii mamavirus]
Length = 960
Score = 279 bits (713), Expect = 1e-72, Method: Composition-based stats.
Identities = 116/564 (20%), Positives = 207/564 (36%), Gaps = 61/564 (10%)
Query: 225 SHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGS-TYDEENFNYKWDTFDFEEIGDTAKK 283
+ W V + + + E +SK+ + +E W + + T
Sbjct: 378 DYHTWYQVGRCLSNI---DHRLLEDWITFSKKCPSKFKKEECERLWRNMNMKPSNYTMAT 434
Query: 284 RSTFTSL-----FYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADT---KAWYK 335
F S ++ KL GL+ +++ + +K F+Y + WY+
Sbjct: 435 LHYFASKDDPDKYFEMKKLKIDGLIKEGMEASHHTIAKLLIEKYKFIYKCASIKNGIWYE 494
Query: 336 KDKNNVYIW-----SLTLDKITASIM-NFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNT 389
+ W + TL + + ++ N + + +F + + NK K T
Sbjct: 495 F---RNHRWIEIDSAYTLRNLISEVLVNEYANRQRILFGEATRQDAENKKEKFNDAVNIT 551
Query: 390 DYRRQ---NVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP 446
+Q N +N K A + LD ++ +G ++G+ DLE G
Sbjct: 552 KVIKQLNNNTFKNGVIKECADIAYDPNFL----RNLDENNYLIGFENGVFDLEAGIFRDG 607
Query: 447 TKELYITKSTGTPFVEGEPSQEFLD----LVSGYFESEEVMDYFTRCVGMALLGGNKAQR 502
+ I+ T ++E + E + + + +Y + L G +
Sbjct: 608 CPDDCISLCTNYKYIEIDEDDETFKNINGFLKKIQPDKSMREYILTLLSTCLSGTISEES 667
Query: 503 FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIV 562
F + G G +GKS LM L+KY G+ Y + + + R + A+P L G R
Sbjct: 668 FYVLTGSGANGKSKLMELLKYTLGDLY-KPMDIRLLTEKRSSSS-SASPELADKKGIRAC 725
Query: 563 IISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDA 622
E +DEIN +K TGGD + AR Y P F PF++ N+ +++ DD
Sbjct: 726 PFDEPKASDEINTGFMKIFTGGDTIAARALYKEPIYFKP-QFKPFLLCNELPTIKSDDDG 784
Query: 623 WWRRYIVIPFDKPIANR-------------------DASFAQKLETKYTLEAKKWFLKGV 663
WRR VIPF D S ++KL + LK
Sbjct: 785 TWRRLKVIPFLSKFIKHSEATKKMKKEGLPKNHFWADTSLSEKLPD-WKQGFMCLLLKYF 843
Query: 664 KAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLW--EESHSLAKSYSEY 721
+ Y GL P++ + E R+ D +Q +I D +N L ++ E+
Sbjct: 844 RKYRKHGLI--HPKLVTQHTVEYRKKCDVFQDFIGDYLVRVDNTKKGISVMDLYQNMREW 901
Query: 722 REQELNYDRKRISTRTVTLNLKQK 745
+ NY K + + + ++ +
Sbjct: 902 --YKSNYTGKCPNAKDLRNYVQHR 923
>gi|212702690|ref|ZP_03310818.1| hypothetical protein DESPIG_00718 [Desulfovibrio piger ATCC 29098]
gi|212673850|gb|EEB34333.1| hypothetical protein DESPIG_00718 [Desulfovibrio piger ATCC 29098]
Length = 540
Score = 279 bits (713), Expect = 2e-72, Method: Composition-based stats.
Identities = 89/506 (17%), Positives = 175/506 (34%), Gaps = 49/506 (9%)
Query: 305 SRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIW-SLTLDKITASIMNFLVSMK 363
+R D ++S +G +Y K W + + W D I +
Sbjct: 50 NRVGD---AKLYSRLHRGTVIYV---KYWDRFLIWGGHHWIEDDFDMAAQRIEDVCELYL 103
Query: 364 EDVFD-LSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKA---KSTAQSLEAGSIFSITS 419
+E E+ +KN ++ + R+ + K +
Sbjct: 104 RLAESKQAEAAEETDKNERAKIEGLASAVLRRVSQLRDTPGQDKLLQMLRRIRDPLVVLP 163
Query: 420 DLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVE-----GEPSQEFLDLV- 473
+D +G++DL TG+ + YI + T + +P E +
Sbjct: 164 KQIDQQHYVKACPNGVIDLRTGELRPGRPDEYILNAIVTEYDPELLRKDDPCPETNRFLL 223
Query: 474 SGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGV-GGSGKSTLMNLIKYAFGNQYVIN 532
S +E++D+ R +G L+ + F + G G +GK TL+ L+ + G +
Sbjct: 224 SSMDGDQELVDFIWRLLGYGLITERRDHIFTIMWGEHGRNGKDTLIKLVTHVLGQTLSGD 283
Query: 533 AEASDIMQ-NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARL 591
+Q + + +P ++ L G + I+E E AK+K++TGG +TAR
Sbjct: 284 VPVEMFLQMQQTRNSSAPSPDVLALRGMCVAWINEAEEGQRFALAKLKKLTGGGYITARG 343
Query: 592 NYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR---------DAS 642
+ + P + N+ + D A+W R ++I + R D
Sbjct: 344 LQDKLQTTWLQTHLPIMTTNELPKAKADDAAFWARAVLIKWPLSFVERPEQPYERPADKD 403
Query: 643 FAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCD 702
+K+ + ++G Y+ GL IP+ + E+R D ++ + C
Sbjct: 404 LNEKIGAEAK-GVLARMVRGSMEYLRDGLK--IPDKVREWTREQRASWDDVGLFLSEWCI 460
Query: 703 IGEN--------LWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
+ L + L +++ + + + R IS + L +K
Sbjct: 461 SESHQANPANYTLKVNATDLHEAFCIWYARYRDR-RYSISAKKFAEALNKK--------- 510
Query: 755 KIEKEWKSKRIIKGLKLKPAFESVDD 780
I + + G+ L D
Sbjct: 511 DIAYKRSNGSWRLGIDLTDEARKELD 536
>gi|303247554|ref|ZP_07333825.1| phage/plasmid primase, P4 family [Desulfovibrio fructosovorans JJ]
gi|302491034|gb|EFL50928.1| phage/plasmid primase, P4 family [Desulfovibrio fructosovorans JJ]
Length = 524
Score = 278 bits (711), Expect = 2e-72, Method: Composition-based stats.
Identities = 95/480 (19%), Positives = 175/480 (36%), Gaps = 29/480 (6%)
Query: 313 KAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEE 372
+ K HF Y + + Y +I ++ L E + +
Sbjct: 57 ATLGVKALKQHFAYDMQRGVFLELTPGGGYFAEDHAGQIKVALQQVLRPQLEQQREALAQ 116
Query: 373 PEDNNKNSKSPRFWFNTDYRR--QNVEENSKAKS----TAQSLEAGSIFSITSDLLDSSS 426
NSK R ++ ++ S S TA + + D +
Sbjct: 117 EAYRTDNSKETRGQAEASRKKYVSALKRLSNKHSLDNITALMRTGRDSLARDNADFDRNP 176
Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGE-PSQEFLDLVSGYFESEEVMDY 485
L + +DL TGQ + TK T + + + ++ ++ +Y
Sbjct: 177 WALHCLNCRIDLRTGQDREGQLGDMSTKYCQTVWRGLQYEHPAWNAYMASLLP-ADMAEY 235
Query: 486 FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545
VG A+ G + + SGK+ L+ K FGN Y A+ +M+++ +
Sbjct: 236 LQHFVGYAITGIQRKAFALFYSKFSDSGKTLLLETFKSVFGN-YAGMLPAALLMEDKKGK 294
Query: 546 AGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFT 605
P L L G R+ +SE+ + D N A++K ++GGD + AR + S P T
Sbjct: 295 GLGPTPELAELQGLRLAFLSESGKADSFNVARLKWLSGGDTLVARGLFAKPVSFEP-MHT 353
Query: 606 PFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR---------DASFAQKLETKY-TLEA 655
F+ N + +DA W R V F + + +L +
Sbjct: 354 LFLASNHLARIGIDEDALWGRIHVFKFPYAFKDNPAKPHERPINPDLKDQLRQEEVKSAI 413
Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLA 715
W ++G A+ G + P +A E R D ++++ C IG+ E++ L
Sbjct: 414 LAWAVRGCLAWQKNGQKFNPPLSSREALETYRLNEDYVESFVRARCLIGKEHREQAKPLH 473
Query: 716 KSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAF 775
++YS++ +E + K + R + G +++ + GL+LK +F
Sbjct: 474 EAYSQWHVEEFGSNSKPLGRRKFCEAM-----AGKFEKDDDGRYH----YYLGLQLKSSF 524
>gi|322510700|gb|ADX06014.1| putative VV D5 family helicase [Organic Lake phycodnavirus 1]
Length = 891
Score = 277 bits (709), Expect = 5e-72, Method: Composition-based stats.
Identities = 108/578 (18%), Positives = 219/578 (37%), Gaps = 81/578 (14%)
Query: 221 FYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGST------YDEENFNYKWDTFDF 274
+ GS+++W+ V MA+ + + ++ W K S + KW +F
Sbjct: 323 YGEGSYNKWVKVGMALKNTSP------KLFITWVKLSSKSAIFEWDSISDMYNKWSSFKQ 376
Query: 275 EEI----------------GDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSI 318
++ G + ++ +A+ Y ++ +
Sbjct: 377 DDSLTHRSIIYWCKESNNDGYLEVFNQSIQKYIHYSFHHNTDYDIANVLYQLYKESFVCV 436
Query: 319 YKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNK 378
K + Y D W + D + + + +I F+ +++ D E+ E+++K
Sbjct: 437 SIKSNIWYEFDDNRWIENDSG-ISLRTKLSSEIYNLFFRFVKTLERQTDDNEEKKENSSK 495
Query: 379 NSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDL 438
SK + + ++N+ K + + + + +LDS +G ++G++D+
Sbjct: 496 FSKISKTL------KTTNDKNNIMKESKEIFYDSAFYK----MLDSKPYLIGCRNGVVDV 545
Query: 439 ETGQKVKPTKELYITKSTGTPFVE--------GEPSQEFLDLVSGYFESEEVMDYFTRCV 490
+ K YI +T + + E + + F E+ +Y +
Sbjct: 546 QNRLFRKGIHSDYIHNTTNNDYYPLEYYKEKSPDVIAEIDEFMYQLFPETELREYMWEHL 605
Query: 491 GMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKAN 550
A++G N+ Q F GVG +GKS L+ L+ G+ Y ++ I Q R G +
Sbjct: 606 ASAIIGTNQNQTFNIYLGVGANGKSKLVELMGKVLGD-YKGTVPSTLITQKRT-SIGNTS 663
Query: 551 PSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVP 610
+ +L+G R ++ E ++ D IN +K++TGGD + R + ++ + P F +
Sbjct: 664 SEVHQLIGKRYAVMQELSKGDTINEGIMKEITGGDPIQCRALFKDSVTFIP-QFKLVVCT 722
Query: 611 NKHLFVRNPDDAWWRRYIVIPFDKPIAN---RDASFAQ-------KLETKYTLEAKKW-- 658
N V++ DD WRR V F D F + K++TK + + W
Sbjct: 723 NTLFDVKSNDDGTWRRIRVCEFKSKFTENPYNDKLFPKEYYPYQFKIDTKLDEKFEYWVP 782
Query: 659 -----FLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAW-----IDDCCDIGENLW 708
++ G D P L+ + R G D + +++ CD G
Sbjct: 783 VFFSMLVQVAFETQ--GKVKDRP-CVLEPTNKYRDGQDILLDFCQSNIVEEPCDSGNLKI 839
Query: 709 EESHSLAKSYSEYREQELNYDRKR-ISTRTVTLNLKQK 745
+ + K + Y + IS + + +++K
Sbjct: 840 GIVNDVFKQW-----MINEYGKNATISNKELREYMEKK 872
>gi|317485315|ref|ZP_07944195.1| phage/plasmid primase [Bilophila wadsworthia 3_1_6]
gi|316923441|gb|EFV44647.1| phage/plasmid primase [Bilophila wadsworthia 3_1_6]
Length = 563
Score = 277 bits (708), Expect = 6e-72, Method: Composition-based stats.
Identities = 90/501 (17%), Positives = 185/501 (36%), Gaps = 50/501 (9%)
Query: 311 YNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMK------E 364
+ +F+ + + D+ + N W +K + +V + +
Sbjct: 51 GDGKLFNRLHRDKIVGVIDSDDFLFW---NGAHWEKAKEKQEFRAIEDVVRLYERLAVEK 107
Query: 365 DVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAG--SIFSITSDLL 422
+ S + D+ K + RR ++ + + + A + + L
Sbjct: 108 EKEFDSVDKRDDPDLKKELQKQLGAIRRRIKTLRDAPGQDNLKKMTARVDPPLLVYPEQL 167
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEG-----EPSQEFLDLV-SGY 476
D R L +G+++LETG+ + Y+ + T + G +P D +
Sbjct: 168 DDKPRLLPCPNGVINLETGELEQGRPRDYLLTACETEYDPGLLDVEDPCPVANDFLLRSM 227
Query: 477 FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGV-GGSGKSTLMNLIKYAFGNQYVINAEA 535
+E++ + R +G L+ K F+ G G +GK TL+ LI G +
Sbjct: 228 DGDKELVAFIWRLLGYGLIRERKDHIFMIFHGEHGRNGKDTLIKLITTTLGKALSGDVPV 287
Query: 536 SDIMQN-RPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
++Q + +P ++RL G I I+E EN + AK+K+++GG +T R Y
Sbjct: 288 EMLLQTPNVKNSSGPSPDVMRLRGMCIAWINEAEENQKFALAKLKKLSGGSYITGRSPYS 347
Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR-----------DASF 643
+ + P + N+ + D A+W+R +++ ++ N+ D
Sbjct: 348 KEETSWKQTHLPIMTTNELPKAKADDAAFWQRALILKWNLSFVNKPDPAKPYQRQADKYL 407
Query: 644 AQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDI 703
+KLE K ++G Y+ G + +PE + E +R D ++ + C
Sbjct: 408 DEKLE-KERKGVLARMVRGAIEYLKYG-GLQVPEKVYRWTESQRTNWDDLAQFLSEWCVR 465
Query: 704 GENLW--------EESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755
+ L +++ Y +R S + K F + +++
Sbjct: 466 EPGHERIEDYKTSISATDLHEAF---CLWYARYKDRRFS-------ISAKKFAEMLNKKE 515
Query: 756 IEKEWKSKRIIKGLKLKPAFE 776
I + + G+ L P +
Sbjct: 516 IPSKKSNGIWRLGITLTPDAD 536
>gi|320352359|ref|YP_004193698.1| phage/plasmid primase, P4 family [Desulfobulbus propionicus DSM
2032]
gi|320120861|gb|ADW16407.1| phage/plasmid primase, P4 family [Desulfobulbus propionicus DSM
2032]
Length = 538
Score = 276 bits (705), Expect = 1e-71, Method: Composition-based stats.
Identities = 82/479 (17%), Positives = 168/479 (35%), Gaps = 36/479 (7%)
Query: 308 SDAYNKAMFSIYKKGHFLYT--ADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKED 365
++ + +++ KG FL+ AW + + ++ + ++
Sbjct: 39 NERGDGVLYATLHKGRFLFNTTPKDGAWLRW--TGIVWEPDDFKDSFKAVEAVALQYEQR 96
Query: 366 VFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEA---GSIFSITSD-- 420
DL E E + + D ++ + + ++ + +A + +
Sbjct: 97 ALDLFAEAEKLEEKGNKEQADKVLDLAKRYRKRVDRLRTENGAKKALVWAPVVEKSMACR 156
Query: 421 --LLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE 478
LD L +G++DL G + +TK+ +++ ++ V
Sbjct: 157 ELELDRQPMRLPCGNGVIDLTAGVLLDGDPADLMTKAIDVNYLKDADYTDWHKFVVEVCG 216
Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538
SE V ++ R G AL G + Q G G +GK L + I G Y + + +
Sbjct: 217 SEAVANFLKRFFGYALTGHSYEQYIAVFIGGGRNGKGVLFSCIGSVLGPYYHVISPSMIT 276
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598
Q P A+ L G R+V+ E+ I+A ++K +TG D + R N+G +
Sbjct: 277 EQRFDPSPNAASEHKYALHGKRLVVAGESKRGQRIDAGQVKGLTGDDKVECRPNFGKMFV 336
Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK------------------PIANRD 640
P + T + N + + +R + I F +D
Sbjct: 337 FDP-THTLCLHTNHMPVGMGSEFSLVQRLLKIDFPWAYVDDPEAEAKKFPPMADRFRKKD 395
Query: 641 ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDC 700
+L KW ++G + +GLD P+ L + E D +++D
Sbjct: 396 KHLKDRLMQNRE-GILKWLVEGCLEWQQRGLDP--PQEILDSAAELANAEDYLTEFLNDS 452
Query: 701 C---DIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKI 756
+ L + + + +K + RT+ ++++G+ + KI
Sbjct: 453 LLPSPDDPDREIGFQGLYQCFLWWWGLNQGDPKKAPANRTLAKAMRERGYTLEKRGGKI 511
>gi|310831484|ref|YP_003970127.1| putative VV D5-type primase/helicase [Cafeteria roenbergensis virus
BV-PW1]
gi|309386668|gb|ADO67528.1| putative VV D5-type primase/helicase [Cafeteria roenbergensis virus
BV-PW1]
Length = 877
Score = 276 bits (705), Expect = 1e-71, Method: Composition-based stats.
Identities = 106/600 (17%), Positives = 214/600 (35%), Gaps = 65/600 (10%)
Query: 225 SHDEWIPVVMAVHHETRGSSKGKEIARRW---SKQGS-TYDEENFNYKWDTFDFEEIGDT 280
++++WI V +++ + + W SK + + W + T
Sbjct: 306 NYEDWIRVGYCLYNI------DRTLLNEWINFSKLCPSKFKKGECENLWKKMKSGQNMYT 359
Query: 281 AKKRSTFTS--------LFYHHGKLIPKGLLASRFSDAYN--KAMFSIYKKGHFLYTADT 330
+ + F +H L S D N A++S Y+ +
Sbjct: 360 IRSLHRWAKEDNYLDYNTFKNHEYNNLFKL--SLTGDHQNIANAIYSKYQTEFVCSSIKN 417
Query: 331 KAWYKKDKNNVYIWSLTLD-----KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRF 385
K WY+ + + + +IT +N +++ ++ + E E + K
Sbjct: 418 KVWYQYNYSQHKWEKIENGYALTSRITNEFVNEYLNLSSQLYQKATEAEPSQKMDILKEV 477
Query: 386 WFNTDYRRQNVEENSKAKSTAQSLEAGSI-FSITSDLLDSSSRFLGEQDGILDLETGQKV 444
N N ST + + ++ LD +G +G+ DL+ G
Sbjct: 478 EKIQGL--VNRLNNESFLSTLMTSLSRRFYLPKFAEDLDEKYDLIGFNNGVFDLKKGIFR 535
Query: 445 KPTKELYITKSTGTPFVEGEPSQE----FLDLVSGYFESEEVMDYFTRCVGMALLGGNKA 500
E Y+T +TG + + + E + L E +Y + G +K
Sbjct: 536 NGHPEDYLTMTTGLDYQQLDTDSEEYIACMKLFEDIHPDVETREYVYTLFSTFISGHHKE 595
Query: 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSR 560
+ G G +GKS L+KY G+ Y+++ + + + R + A P L +L G R
Sbjct: 596 ETLHLFNGCGSNGKSVTFELLKYCLGD-YIMSVPVTLLTRKRAG-SENATPMLAQLKGKR 653
Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
+ ++ E E ++++ +K++TG D +TAR + + + P I N V D
Sbjct: 654 LGVLQEPEEGEKLHVGLMKELTGNDEITARPMFESPITFKP-QIKFAIPCNNLPEVPARD 712
Query: 621 DAWWRRYIVI----PF----DKPIANR---DASFAQKLETKYTLEAKKWFLKGVKAYISK 669
WRR VI F ++ N+ D + +KLE + + Y+ K
Sbjct: 713 KGTWRRLRVIDHLMEFVDKPNQKYPNQKQIDRTLKEKLEGMAGQFMSFLIDRYINVYVKK 772
Query: 670 GLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDI--GENLWEESHSLAKSYSEYREQELN 727
G+ +P + Q + + + + ++ + ++ + + +Y ++E
Sbjct: 773 GMK--VPNSVTFSTNVYNQDNNCIKQFCESKFEVTGKKTDTISQKTIWEEFKQYFKEEQE 830
Query: 728 YDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDNSNIIDF 787
+++ I R L K K + G+ F D+ + +D
Sbjct: 831 GNKRPI-QREFYSYLD--------KTYGQAISGKGGKKYCGI----IFSGDDEENEDVDL 877
>gi|189916734|gb|ACE62875.1| phage-related protein FY0076 [Xylella fastidiosa]
Length = 297
Score = 274 bits (700), Expect = 5e-71, Method: Composition-based stats.
Identities = 70/304 (23%), Positives = 124/304 (40%), Gaps = 33/304 (10%)
Query: 464 EPSQEFLDLVSGYFESE-----EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLM 518
P+ EF+ ++ E + + R G G + Q+F + G G +GKSTL+
Sbjct: 1 APAPEFITTLARITCEEGEASKPLCAFLQRWFGYCATGEVREQKFAVLYGDGNNGKSTLL 60
Query: 519 NLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKI 578
+LI G + A +N P + ++ L G R+V E+ E + + +
Sbjct: 61 DLITGILGRYSGVAAPGLLTGKNGP----QHPNAIADLAGRRMVTTHESGEGEVLREDFV 116
Query: 579 KQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA- 637
KQ TGGD + AR YG + P + ++ N ++ D WRR ++IPF
Sbjct: 117 KQATGGDTLKARYLYGEFFEFKP-THKLQLLTNHKPVIKGQDSGIWRRIMLIPFKAKFDA 175
Query: 638 -----------NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEE 686
RD A+KL + W + G + GL P++ L A E+
Sbjct: 176 AEGEEIGNGKYPRDMRIAEKLAAERE-GVLAWIVAGAVEWYKNGLRP--PDIVLAASEDY 232
Query: 687 RQGTDTYQAWIDDCCDIGENLWEE-----SHSLAKSYSEYREQELNYDRKRISTRTVTLN 741
++ D +ID+ C++G E+ L +Y+++ + +S
Sbjct: 233 KEEQDRVGQFIDEECELGVEKEEKLSTPMGGGLYPAYTQWCKASGVC---ALSKVRFLGG 289
Query: 742 LKQK 745
L+++
Sbjct: 290 LERR 293
>gi|91214217|ref|NP_919008.2| DR0530-like primase [Burkholderia phage BcepNazgul]
gi|88604910|gb|AAQ63375.2| DR0530-like primase [Burkholderia phage BcepNazgul]
Length = 843
Score = 272 bits (696), Expect = 1e-70, Method: Composition-based stats.
Identities = 111/684 (16%), Positives = 216/684 (31%), Gaps = 97/684 (14%)
Query: 8 EQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGF----------- 56
+ I NG+ ++P+ G+K P G W++ + + K+ A G +
Sbjct: 12 DHGDALIANGYNIVPITPGEKFPPHDG-WQQTVATQAKLKTWLATGLKYTKNGEDRVADV 70
Query: 57 ---VCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGI 113
G + DID DE A ++ G VR+G+ P+ L+ FR +
Sbjct: 71 KLAGVGFLTKNTPGVDIDISDEGFAKHMENFVHENFGMAPVRVGRAPRRLLLFRCTEPFS 130
Query: 114 KKKKTTESTQG----HLDILGCGQYFVAYNIHPKTKKEYTWT--TPPHRFKVEDTPLLSE 167
K + + ++IL GQ FVA++IHP TK+ Y W P + + P+L
Sbjct: 131 KVNSSVYLDEWGEAQKVEILANGQQFVAFHIHPDTKRPYEWLYKQSPLDIEASELPVLRR 190
Query: 168 EDVEYLFKFFQE---ITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYN- 223
D + + F++ + +K + P ++ + + GE+ +
Sbjct: 191 VDAQAIVDEFEKQAKLRGWTLKKRSRTAPERSESGGEIDYDDPFAADVAKTDIGEDELHA 250
Query: 224 --------GSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFE 275
++ W+ V MA+ H+ G +G E+ WS+ YD + + KW +FD
Sbjct: 251 KLLLVPDADDYETWVNVGMALFHQYDGHERGLELWHEWSETADNYDAKELDAKWKSFDIS 310
Query: 276 EIGDT-------AKKRSTFTSLFYHHGKLIPKGLLASRFS----------------DAYN 312
T K + + LL S D +
Sbjct: 311 NKSRTPITARYIIKLAKEAAEKTAEETMVALQKLLLEATSMNMLNSACKAIKKATLDKPS 370
Query: 313 KAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEE 372
+ + + + F D + + K + M L ++
Sbjct: 371 RELMVTFVRQAFKRINDGSPLPLNAARQMIRFENPESKHMPKWL-----MGWTYLTLDDK 425
Query: 373 PEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQ 432
+ N R FN+ + R + + ++ + L
Sbjct: 426 FYNVNTQEYMTRSAFNSAFERFLLTPQDVLEGRVVPDTTAEKLALNRHQIPVCRTRLYLP 485
Query: 433 --------DG--ILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEV 482
+G +L T + V + + + LD + ++
Sbjct: 486 EQDETFIMNGARYANLYTDKSVPECPSKLTS-------EDKLNVKRILDHFNMMIPADRE 538
Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542
F + + + I ++G GK+ +++ G + V A +
Sbjct: 539 RGIFIDWLAWIIQTQKRPNWAIVLQGTESDGKTFFSDMMGVILGPENVKTLNAKTLEGAF 598
Query: 543 PPEAGKANPSLIRLMGSRIVIISET-----NENDEINAAKIKQMTGGDCMTARLNYGNTY 597
A GS + + E N D +N +IK + + + Y
Sbjct: 599 NGWAE----------GSLLNCVEEIKLHGHNRFDVLN--QIKPLITNTAIEIHRKGVDPY 646
Query: 598 SESPASFTPFIVP--NKHLFVRNP 619
+ + + + VRN
Sbjct: 647 NTINTAAYLLLTNFKDALPLVRND 670
>gi|327396932|dbj|BAK14298.1| phage-related protein [Red sea bream iridovirus]
Length = 920
Score = 270 bits (689), Expect = 1e-69, Method: Composition-based stats.
Identities = 98/593 (16%), Positives = 193/593 (32%), Gaps = 88/593 (14%)
Query: 206 TNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGS-TYDEEN 264
T ++ A + + W+ V ++ S G + +S + ++
Sbjct: 289 TPADVRALVDMLPASVA-ADRNTWLKVGFCLYQVMDASEDGLRLWMSFSAKCPEKFNATV 347
Query: 265 FNYKWDTF---DFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRF---SDAYNKAMFSI 318
+ W+ + I +++ Y + + A R + M+S
Sbjct: 348 CHDMWERQMRPNMYTIATLRYLAKQYSTEAYD-AWTHSQWMSAERLKLTHVSLASIMYSA 406
Query: 319 YKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNK 378
+ + WYK D +W+ + S+++ V + + +
Sbjct: 407 LGTHYVCGNIKGELWYKFDNG---VWNEKGMNVIRSLISNEAGPIHQVLNKFLASVASGQ 463
Query: 379 NSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSIT-SDLLDSSSRFLGEQDGILD 437
+ + +R + +S KS+ A + LD++ + +G+ D
Sbjct: 464 VPEPDESFLKCLHRTTFMLGSSPFKSSVMRECAEQFYRDDFVQRLDTNPYMIAFSNGVYD 523
Query: 438 LETGQKVKPTKELYITKSTGTPFVEG---------------------------------- 463
+T E ++++ + G
Sbjct: 524 FKTRTFRPGQPEDMLSRTLPVAYTTGGYGRYVDDILSVATLDPLSNTYNVCALLDNIETV 583
Query: 464 -------EPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKST 516
+P + + + F EV +YF R V +GGN + + G G +GK+
Sbjct: 584 GNTMTAKQPLCDVIRFYNTTFPDPEVREYFLRQVSHVFVGGNADKVCLFWTGSGNNGKTV 643
Query: 517 LMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLM-GSRIVIISETNENDEINA 575
+ + G+ + + ++ R P ANP L RL G R ++ E N ++ IN
Sbjct: 644 TQTMFEKMLGS-FAVKMST-TVLTGRKPCVTSANPELARLRNGVRWAVMEEPNNDETINP 701
Query: 576 AKIKQMTGGDCMTARLNY--GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF- 632
+K MTG D AR + G SE F + N ++ D A W R V+PF
Sbjct: 702 GPLKSMTGNDSFFARDLWCSGKDTSEIIPMFKLHCICNTLPDIKMADMATWNRVRVVPFE 761
Query: 633 --------------DKPIANR------DASFAQKLETKYTLEAKKWFLKGVKAY-ISKGL 671
D P+ R D F K+ +E W L V+ + + +G
Sbjct: 762 AVFVSGERLEEARRDVPVEQRDCVQVMDKYFVDKI--PLLVEPMAWLL--VQLWGVLQGE 817
Query: 672 DVDI---PEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEY 721
D P ++ +E + + + + D + + + Y
Sbjct: 818 PADAYKTPRKVIQVTKEYEEANNYVRGFADAMMVREPGASVTEMEVYREFKAY 870
>gi|189916736|gb|ACE62876.1| phage-related protein FY0076 [Xylella fastidiosa]
Length = 305
Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats.
Identities = 69/307 (22%), Positives = 123/307 (40%), Gaps = 32/307 (10%)
Query: 460 FVEGEPSQEFLDLVSGYFESEE----VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKS 515
+ P+ E + + E + + R G G + Q+F + G G +GKS
Sbjct: 1 YSTLAPAPELYHTCAHHLRRREAXKPLCAFLQRWFGYCATGEVREQKFAVLYGDGNNGKS 60
Query: 516 TLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA 575
TL++LI G + A +N P + ++ L G R+V E+ E + +
Sbjct: 61 TLLDLITGILGRYSGVAAPGLLTGKNGP----QHPNAIADLAGRRMVTTHESGEGEVLRE 116
Query: 576 AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP 635
+KQ TGGD + AR YG + P + ++ N ++ D WRR ++IPF
Sbjct: 117 DFVKQATGGDTLKARYLYGEFFEFKP-THKLQLLTNHKPVIKGQDSGIWRRIMLIPFKAK 175
Query: 636 IA------------NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAK 683
RD A+KL + W + G + GL P++ L A
Sbjct: 176 FDAAEGEEIGNGKYPRDMRIAEKLAAERE-GVLAWIVAGAVEWYKNGLRP--PDIVLAAS 232
Query: 684 EEERQGTDTYQAWIDDCCDIGENLWEE-----SHSLAKSYSEYREQELNYDRKRISTRTV 738
E+ ++ D +ID+ C++G E+ L +Y+++ + +S
Sbjct: 233 EDYKEEQDRVGQFIDEECELGVEKEEKLSTPMGGGLYPAYTQWCKASGVC---ALSKVRF 289
Query: 739 TLNLKQK 745
L+++
Sbjct: 290 LGGLERR 296
>gi|189916738|gb|ACE62877.1| phage-related protein FY0076 [Xylella fastidiosa]
gi|189916740|gb|ACE62878.1| phage-related protein FY0076 [Xylella fastidiosa]
Length = 293
Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats.
Identities = 68/285 (23%), Positives = 118/285 (41%), Gaps = 30/285 (10%)
Query: 464 EPSQEFLDLVSGYFESE-----EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLM 518
P+ EF+ ++ E + + R G G + Q+F + G G +GKSTL+
Sbjct: 1 APAPEFITTLARITCEEGEASKPLCAFLQRWFGYCATGEVREQKFAVLYGDGNNGKSTLL 60
Query: 519 NLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKI 578
+LI G + A +N P + ++ L G R+V E+ E + + +
Sbjct: 61 DLITGILGRYSGVAAPGLLTGKNGP----QHPNAIADLAGRRMVTTHESGEGEVLREDFV 116
Query: 579 KQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA- 637
KQ TGGD + AR YG + P + ++ N ++ D WRR ++IPF
Sbjct: 117 KQATGGDTLKARYLYGEFFEFKP-THKLQLLTNHKPVIKGQDSGIWRRIMLIPFKAKFDA 175
Query: 638 -----------NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEE 686
RD A+KL + W + G + GL P++ L A E+
Sbjct: 176 AEGEEIGNGKYPRDMRIAEKLAAERE-GVLAWIVAGAVEWYKNGLRP--PDIVLAASEDY 232
Query: 687 RQGTDTYQAWIDDCCDIGENLWEE-----SHSLAKSYSEYREQEL 726
++ D +ID+ C++G E+ L +Y+++ +
Sbjct: 233 KEEQDRVGQFIDEECELGVEKEEKLSTPMGGGLYPAYTQWCKASG 277
>gi|332703042|ref|ZP_08423130.1| phage/plasmid primase, P4 family [Desulfovibrio africanus str.
Walvis Bay]
gi|332553191|gb|EGJ50235.1| phage/plasmid primase, P4 family [Desulfovibrio africanus str.
Walvis Bay]
Length = 572
Score = 268 bits (685), Expect = 3e-69, Method: Composition-based stats.
Identities = 84/506 (16%), Positives = 190/506 (37%), Gaps = 52/506 (10%)
Query: 312 NKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSE 371
N+ +F F + + W + D N + + ++ + +
Sbjct: 78 NQLLFDNTTGEAFRFNC--QRWLR-DTNRCH--QPRVAQLADPYKARAADLHQQALSKEA 132
Query: 372 EPED----------NNKNSKSPRFWFNTDYRR-QNVEENSKAKSTAQSLEAG-SIFSITS 419
E + + + R + R +N+ + AG I+
Sbjct: 133 ECQHGGCTREPKCLACQEADRIRGFKKAHENRAKNLCKLPHINKVWTLATAGEDSLGISG 192
Query: 420 DLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLV--SGYF 477
+ + + L ++ ++DLETG+ + + Y+ K++ ++ EF D +
Sbjct: 193 EEWERHTSLLVCKNCVVDLETGRSYQGRPDWYLYKASPVEYLGLNVGCEFWDDLLWKVSC 252
Query: 478 ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGV-GGSGKSTLMNLIKYAFGNQYVINAEAS 536
+ ++ +DY G + G + + F G + KST+ I+ A G+
Sbjct: 253 KDQDWIDYLGLVAGYSATGLSNYKDFYCAYGPLADNAKSTVYGAIRAALGDYSETLPVEL 312
Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGG-DCMTARLNYGN 595
+ R + P ++RL R+ + E +N + IK+ +GG D ++AR YG
Sbjct: 313 LLDGGRVKASSGPQPDIMRLRHLRMAVFDEAEQNHHFAMSAIKRYSGGEDMISARGMYGK 372
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI----------ANRDASFA- 644
P++ + N + D+ ++ R VIPF+ AN + ++
Sbjct: 373 EQVTFPSTAKLHLHTNFIPKAKGNDEGFYNRLRVIPFEACFLLPGRTPPSGANPEHTYQA 432
Query: 645 -----QKLETKYTLEAKKWFLKGV---KAYISKGLDVDIPEVCLKAKEEERQGTDTYQAW 696
++ + W ++ I++G + +P+ +A E R D +
Sbjct: 433 QPGVVKRELERCRPGILSWIVRNAVKVHKLIAEGKGLPLPDRVREAVREYRNEQDMTGRF 492
Query: 697 IDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIST-RTVTLNLKQKGFIGGIKREK 755
+ +CC +GE + L +Y ++ +E+ K+I T +T+ +++K +
Sbjct: 493 LRECCVVGEGA-TQMKDLYGAYRKWCIEEMQLTDKQIPTMKTLGMDVKNR---------- 541
Query: 756 IEKEWKSKRIIKGLKLKPAFESVDDN 781
+++ ++ + + P + +D
Sbjct: 542 LKRVPPKNIVVYAVTVAPCWLLSEDE 567
>gi|62421295|gb|AAX82415.1| D5 family NTPase [Orange-spotted grouper iridovirus]
Length = 920
Score = 268 bits (685), Expect = 3e-69, Method: Composition-based stats.
Identities = 97/593 (16%), Positives = 193/593 (32%), Gaps = 88/593 (14%)
Query: 206 TNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGS-TYDEEN 264
T ++ A + + W+ V ++ + G + +S + ++
Sbjct: 289 TPADVRALVDMLPASVA-ADRNTWLKVGFCLYQVMDAAEDGLRLWMSFSAKCPEKFNATV 347
Query: 265 FNYKWDTF---DFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRF---SDAYNKAMFSI 318
+ W+ + I +++ Y + + A R + M+S
Sbjct: 348 CHDMWERQMRPNMYTIATLRYLAKQYSTEAYD-AWTHSQWMSAERLKLTHVSLASIMYSA 406
Query: 319 YKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNK 378
+ + WYK D +W+ + S+++ V + + +
Sbjct: 407 LGTHYVCGNIKGELWYKFDNG---VWNEKGMNVIRSLISNEAGPIHQVLNKFLASVASGQ 463
Query: 379 NSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSIT-SDLLDSSSRFLGEQDGILD 437
+ + +R + +S KS+ A + LD++ + +G+ D
Sbjct: 464 VPEPDESFLKCLHRTTFMLGSSPFKSSVMRECAEQFYRDDFVQRLDTNPYMIAFSNGVYD 523
Query: 438 LETGQKVKPTKELYITKSTGTPFVEG---------------------------------- 463
+T E ++++ + G
Sbjct: 524 FKTRTFRPGQPEDMLSRTLPVAYTTGGYGRYVNDILSAATLDPLSNTYNVCALLDNIETV 583
Query: 464 -------EPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKST 516
+P + + + F EV +YF R V +GGN + + G G +GK+
Sbjct: 584 GNTMTAKQPLCDVIRFYNTTFPDPEVREYFLRQVSHVFVGGNADKVCLFWTGSGNNGKTV 643
Query: 517 LMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLM-GSRIVIISETNENDEINA 575
+ + G+ + + ++ R P ANP L RL G R ++ E N ++ IN
Sbjct: 644 TQTMFEKMLGS-FAVKMST-TVLTGRKPCVTSANPELARLRNGVRWAVMEEPNNDETINP 701
Query: 576 AKIKQMTGGDCMTARLNY--GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF- 632
+K MTG D AR + G SE F + N ++ D A W R V+PF
Sbjct: 702 GPLKSMTGNDSFFARDLWCSGKDTSEIIPMFKLHCICNTLPDIKMADMATWNRVRVVPFE 761
Query: 633 --------------DKPIANR------DASFAQKLETKYTLEAKKWFLKGVKAY-ISKGL 671
D P+ R D F K+ +E W L V+ + + +G
Sbjct: 762 AVFVSGERLEEARRDVPVEQRDCVQVMDKYFVDKI--PLLVEPMAWLL--VQLWGVLQGE 817
Query: 672 DVDI---PEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEY 721
D P ++ +E + + + + D + + + Y
Sbjct: 818 PADAYKTPRKVIQVTKEYEEANNYVRGFADAMMVREPGASVTEMEVYREFKAY 870
>gi|19881514|ref|NP_612331.1| ORF109L [Infectious spleen and kidney necrosis virus]
gi|19773719|gb|AAL98833.1|AF371960_109 ORF109L [infectious spleen and kidney necrosis virus]
Length = 921
Score = 268 bits (684), Expect = 4e-69, Method: Composition-based stats.
Identities = 96/593 (16%), Positives = 193/593 (32%), Gaps = 88/593 (14%)
Query: 206 TNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGS-TYDEEN 264
T ++ A + + W+ V ++ + G + +S + ++
Sbjct: 290 TPADVRALVDMLPASAA-ADRNTWLKVGFCLYQVMDATEDGLRLWMSFSAKCPEKFNATV 348
Query: 265 FNYKWDTF---DFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRF---SDAYNKAMFSI 318
+ W+ + + +++ Y + + A R + M+S
Sbjct: 349 CHDMWERQMRPNTYTVATLRYLAKQYSTEAYD-AWTHSQWMSAERLKLTHVSLASIMYSA 407
Query: 319 YKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNK 378
+ + WYK D +W+ + S+++ V + + +
Sbjct: 408 LSTHYVCGNIKGELWYKFDNG---VWNEKGMNVIRSLISNEAGPIHQVLNKFLAGVASGQ 464
Query: 379 NSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSIT-SDLLDSSSRFLGEQDGILD 437
+ + +R + +S KS+ A + LD++ + +G+ D
Sbjct: 465 VPEPDETFLKCLHRTTFMLGSSPFKSSVMRECAEQFYRDDFVQRLDTNPYMIAFSNGVYD 524
Query: 438 LETGQKVKPTKELYITKSTGTPFVEG---------------------------------- 463
+T E ++++ + G
Sbjct: 525 FKTRTFRPGQPEDMLSRTLPVAYTVGGYGRYVDDILSAATLDPLSNTYNVCALLDNIETV 584
Query: 464 -------EPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKST 516
+P + + + F EV +YF R V +GGN + + G G +GK+
Sbjct: 585 GNTMTAKQPLCDVIRFYNTTFPDPEVREYFLRQVSHVFVGGNADKVCLFWTGSGNNGKTV 644
Query: 517 LMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLM-GSRIVIISETNENDEINA 575
+ + G+ + + ++ R P ANP L RL G R ++ E N ++ IN
Sbjct: 645 TQTMFEKMLGS-FAVKLST-TVLTGRKPCVTSANPELARLRNGVRWAVMEEPNNDETINP 702
Query: 576 AKIKQMTGGDCMTARLNY--GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF- 632
+K MTG D AR + G SE F + N ++ D A W R V+PF
Sbjct: 703 GPLKSMTGNDSFFARDLWCSGKETSEIIPMFKLHCICNTLPDIKMADMATWNRVRVVPFE 762
Query: 633 --------------DKPIANR------DASFAQKLETKYTLEAKKWFLKGVKAY-ISKGL 671
D P+ R D F K+ +E W L V+ + + +G
Sbjct: 763 AVFVSGERLEEARRDVPVEQRDCVQVMDKYFVDKI--PLLVEPMAWLL--VQLWGVLQGE 818
Query: 672 DVDI---PEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEY 721
D P ++ +E + + + + D + + + Y
Sbjct: 819 PADAYKTPRKVIQVTKEYEEANNYVRGFADAMMVHEPGASVTEMEVYREFKAY 871
>gi|51244031|ref|YP_063915.1| hypothetical protein DP0179 [Desulfotalea psychrophila LSv54]
gi|50875068|emb|CAG34908.1| hypothetical protein, probably cold-shock inducible [Desulfotalea
psychrophila LSv54]
Length = 652
Score = 267 bits (682), Expect = 7e-69, Method: Composition-based stats.
Identities = 70/369 (18%), Positives = 139/369 (37%), Gaps = 34/369 (9%)
Query: 418 TSDLLD-SSSRFLGEQDGILDL--ETG--QKVKPTKELYITKSTGTPFVEGEPSQEFLDL 472
+ + + +G L L +TG + K Y T F + F
Sbjct: 294 ANHEFNIGDPNVINCLNGELHLNHKTGSWEPKSHDKLAYRTSQIPVEFDPTATAPRFKQF 353
Query: 473 VSGYFE----SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528
++ FE S++ G ++ + F+ + G G +GKS ++L++ G +
Sbjct: 354 LNEIFETDEDSQDKTRALLEMCGYTMVAHCSYELFVILIGTGANGKSVFLSLLEAIVGPK 413
Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588
+ + S NR + I++E + + I A++K + G+ T
Sbjct: 414 NTVGVQPSQF-DNRFQRG--------HMRHKLANIVTEIKQGEVIADAELKGIVSGEPST 464
Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQK 646
+ + ++ P T + N R+ +A +RR +++ F++ ++ +
Sbjct: 465 VENKFKDPFTMRP-HVTCWFATNHMPHTRDFSEALFRRALILKFNRVFSDEEKNPKLKDE 523
Query: 647 LETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGEN 706
L + L + G P+ +AKEE R D Q +++DCC+
Sbjct: 524 LFAEL-PGILNLALHAYANAVLNG--FTKPDSSEQAKEEWRLEADQVQQFVEDCCEKSPY 580
Query: 707 LWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRII 766
ES +L ++Y + E RK +S ++ L + GF K K R++
Sbjct: 581 EEIESSTLFRAYRSWAETNG--IRKMLSQKSFRDRLTRLGF--------GSKRNKQARLV 630
Query: 767 KGLKLKPAF 775
G+ + F
Sbjct: 631 TGIAMANNF 639
>gi|82800076|gb|ABB92287.1| putative D5 family NTPase/ATPase [Tiger frog virus]
Length = 975
Score = 267 bits (682), Expect = 7e-69, Method: Composition-based stats.
Identities = 104/673 (15%), Positives = 204/673 (30%), Gaps = 125/673 (18%)
Query: 177 FQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAV 236
+ + + K + W + + + + +T + + + W+ V +
Sbjct: 272 LADYSAVMAKLDVARQRKPAWNTDTTKAHRLKRVTELTAMLTADLAD-DRQTWLNVGFCL 330
Query: 237 HHETRGSSKGKEIARRWSKQGSTYDEENFNYKWD---TFDFEEIGDTAKKRSTFTSLFYH 293
+T GS++G ++ +SK+ DE+ W+ + G Y
Sbjct: 331 WQQTSGSAEGYKVWLSFSKKSDKCDEDECWTIWNNQMRPNSFTEGTLVYLAQKHNPGAYL 390
Query: 294 H---------GKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNN---- 340
+ + +A D Y K Y D W + ++
Sbjct: 391 NWLQVKSTPVNDIGTNVAMAKIMWDYYGHQFVCCGGKTQTWYRFDGLTWVESNQGTDLRS 450
Query: 341 -VYIWSLTLDKITASIMNFLVSMK------------EDVFDLSEEPEDNNKNSKSPRFWF 387
+ L ++ ++ + + K +D D + + +D+N R
Sbjct: 451 LISAEGGPLRRLLMRQLDAVTAAKARGGRDSGNEDEDDKEDSATDEDDSNPWDSELRRLD 510
Query: 388 NTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLL---------DSSSRFLGEQDGILD- 437
+ + K + ++ ++L DS +GI D
Sbjct: 511 SEVLDAMVKRLRNNLKGIEMTGVKNNVLRECAELFYQPEFGDVIDSDPLLFAFANGIYDF 570
Query: 438 ----LETGQ----------------------------------------KVKPTK----- 448
L G+ +
Sbjct: 571 REGCLRDGRPEDKLSRRAPVDFVMFGPIPKARHPDNSPVMRPKRMPGESVQDHARRLAEC 630
Query: 449 --ELYITKSTGT------------PFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMAL 494
+ I+ S GT P P + L + F E +F R
Sbjct: 631 FEQDDISTSAGTMGKEDVDSFSCNPKDFKGPVNKLLAFFASVFPDEGTRRFFLRNAAATF 690
Query: 495 LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLI 554
+GGN + + G G +GK+ L + G + + + R P AG ANP +
Sbjct: 691 VGGNPDKVVLFWTGTGNNGKTVTQTLFEKMLG-CFAVKMSTQTLT-GRKPSAGSANPEMA 748
Query: 555 RL-MGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY--GNTYSESPASFTPFIVPN 611
RL G R ++ E N ++ INA +K MTG D AR Y G T E F ++ N
Sbjct: 749 RLGGGVRWAVMEEPNSDETINAGTLKSMTGNDSFFARDLYCAGKTTFEIKPMFKLHVICN 808
Query: 612 KHLFVRNPDDAWWRRYIVIPFDKPIANR--------------DASFAQKLETKYTLEAKK 657
+++ D A W R V+PF+ D +KL+
Sbjct: 809 ALPGIKDADQATWNRVRVVPFESTFVTPGTTAPADAKYVFPADTDITRKLDR--LTAPLA 866
Query: 658 WFLKGVKA-YISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAK 716
W+L A ++ + P ++A ++ D ++ + ++ +
Sbjct: 867 WYLVYCWACIQNERVKYVPPPKVMEATMAYQKEHDLFRQFAEEMLRKDPDSTLTCDDAYT 926
Query: 717 SYSEYREQELNYD 729
++ ++ +
Sbjct: 927 AFRDWTSANSPHG 939
>gi|307320179|ref|ZP_07599599.1| phage/plasmid primase, P4 family [Sinorhizobium meliloti AK83]
gi|306894225|gb|EFN24991.1| phage/plasmid primase, P4 family [Sinorhizobium meliloti AK83]
Length = 602
Score = 266 bits (681), Expect = 7e-69, Method: Composition-based stats.
Identities = 79/458 (17%), Positives = 158/458 (34%), Gaps = 53/458 (11%)
Query: 351 ITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLE 410
+ + +ED + + ++ V + AK A
Sbjct: 137 LIDKAIEARKKPEEDRNPTEKRLAIAAEKAEEAHGKRVKRRLDHAVTSKNVAKMQAALSC 196
Query: 411 AGSIFSITSDLLDSSSRFLGEQDG--ILDLETGQKVK----------------------- 445
A + + +++ + Q+ + +T ++
Sbjct: 197 AAPHIMRSPNDFNANRMMVAVQNATLVFHRKTERRKNPRHKSVSETPDAPEYIDACVDSS 256
Query: 446 ------PTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNK 499
+ IT + +++ + ++V G+ LLG
Sbjct: 257 LEVIPGHRRRDMITHIVPVRYRPEAKCSKWMAFIESKLPDKDVRRLVQVSSGLGLLGIT- 315
Query: 500 AQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGS 559
Q G G +GKS M + G+ V S I + +G A+P L RL G
Sbjct: 316 VQYLFFHYGDGANGKSVYMETLCRLLGDVAVTLPATSLIGE--GGSSGSASPDLARLHGR 373
Query: 560 RIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNP 619
R++ + E E +++ +K++TGG+ +TAR + P F + N + +
Sbjct: 374 RLLRVKELPEGEDLRENLVKELTGGETITARDLFSGYTDFLPI-FIAIMSGNGYPRITGT 432
Query: 620 DDAWWRRYIVIPFDKPIANRDASFAQKLE---TKYTLEAKKWFLKGVKAYISKGLDVDIP 676
DD WRR VI + IA D +++ W ++G ++ +GL IP
Sbjct: 433 DDGIWRRMAVIHWPNKIAKEDRREFEEIVSSFEPEHPGILNWLIEGAHIFLREGL--VIP 490
Query: 677 EVCLKAKEEERQGTDTYQAWIDDCCDIGENLW-EESHSLAKSYSEYREQELNYDRKRIST 735
E KA +E R D ++ C + N + L ++Y + ++ K ++
Sbjct: 491 EAVEKATQEYRDDMDRTAGFVGRCIERDANADPLQGKDLYQAY---CDDTVDQGGKPMNV 547
Query: 736 RTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773
+ +K ++E+ + + G++LK
Sbjct: 548 TAFGRVMSKK-----FRKERTA----TGVVYFGVRLKN 576
>gi|56418240|gb|AAV91054.1| D5 family NTPase [Grouper iridovirus]
Length = 966
Score = 266 bits (680), Expect = 9e-69, Method: Composition-based stats.
Identities = 116/739 (15%), Positives = 221/739 (29%), Gaps = 147/739 (19%)
Query: 133 QYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSII 192
+ + +IHP +++Y F+ D + + L K+ + K
Sbjct: 226 REAMILSIHPVERQKY--------FRRYDFTANNPGALLRLTKY----SAVRAKLDMVRQ 273
Query: 193 PSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARR 252
W + + + + + W+ V + +T+GS +G +I
Sbjct: 274 RKTCWKTDLTEFHKLKRFRELTGMLTGDIAD-DRQSWLHVGFCLWQQTQGSLEGYKIWLN 332
Query: 253 WSKQGSTYDEENFNYKW------DTFDFEEIGDTAKKRSTFTSLFYHHGKLIP------K 300
+SK+ DE+ W ++F + +K + L + K P
Sbjct: 333 FSKKSEKCDEDECWRIWNNQMRPNSFTEGTLVYMVQKHNPAAYLNWLQTKSTPVKDMGTN 392
Query: 301 GLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLV 360
+A D Y K Y D W + ++ ++ D + L
Sbjct: 393 VAMAKIMWDYYGHEFVCCGAKNQIWYRFDGLTWVESNQGIDLRSLISADG--GPLKRLLT 450
Query: 361 SMKEDVFDLSEEPEDNNKN-------------------------SKSPRFWFNTDYRRQN 395
E V + + N + + R +
Sbjct: 451 RQLEAVKTALAQADGGNDSGISDVEDDEELEETDEEDGDNGNPWASELRRLPKKKLKLIM 510
Query: 396 VEENSKAKSTAQSLEAGSIFSIT---------SDLLDSSSRFLGEQDGILDLETGQKVKP 446
S K + ++ SD LD+ +G+ D + G
Sbjct: 511 ARLKSNLKGIEMTGVKNNVLRECAELFYRPNFSDELDADPLLFAFSNGVYDFKEGCLRDG 570
Query: 447 TKELYITKSTGTPFVEGEPSQEFL----------------------DLVSGYFESEE--- 481
E +++ F+ P ++ +FE ++
Sbjct: 571 RPEDKLSRRAPIDFIAFAPIPSARHPGAKLRRRPKRQPGESVADHARRLAEFFEEDDAAN 630
Query: 482 --------------------------VMDYF-------------TRCVGMALLGGNKAQR 502
++ +F R +GGN +
Sbjct: 631 CDPWSPTGENCIFSCDPKDFSGPVARLLAFFSTVFPDEGTRRFFLRNAAQTFIGGNPDKV 690
Query: 503 FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRL-MGSRI 561
+ G G +GK+ L + G + + + R P AG ANP L RL G R
Sbjct: 691 CLFWTGTGNNGKTVTQTLFEKMLG-CFAVKMSTQTLT-GRKPSAGAANPELARLGCGVRW 748
Query: 562 VIISETNENDEINAAKIKQMTGGDCMTARLNY--GNTYSESPASFTPFIVPNKHLFVRNP 619
++ E N ++ INA +K MTG D AR Y G T E F ++ N +++
Sbjct: 749 AVMEEPNSDETINAGTLKSMTGNDSFFARDLYCAGKTTHEIKPLFKLHVICNTLPAIKDA 808
Query: 620 DDAWWRRYIVIPFDKPIANR--------------DASFAQKLETKYTLEAKKWFLKGVKA 665
D A W R V+PF+ D ++KL+ W+L +
Sbjct: 809 DQATWNRVRVVPFEATFVTPGTKAPADAKYKFPADTDISRKLDR--LTAPLAWYLVYCWS 866
Query: 666 -YISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQ 724
++ + P ++A E ++ D ++ + D+ ++ E+
Sbjct: 867 CMQNETVKYVPPTKVMEATMEYQKEHDLFRQFYDEKLHQNPTACLSCDEAYAAFREWATL 926
Query: 725 ELNYDRKRISTRTVTLNLK 743
+ R S + L+
Sbjct: 927 NCPHSFARRSKTQIVKCLE 945
>gi|144898907|emb|CAM75771.1| primase [Magnetospirillum gryphiswaldense MSR-1]
Length = 757
Score = 266 bits (679), Expect = 1e-68, Method: Composition-based stats.
Identities = 66/287 (22%), Positives = 115/287 (40%), Gaps = 30/287 (10%)
Query: 10 AKQAIHNGFKLIPLRLGDKRPQRL--GKWEE------------QLLSSEKIDKLPACGFG 55
+ + NG+ IP+ G K+P R G W + L+ E P G
Sbjct: 12 GARLVDNGYPAIPIWPGSKKPGRFQAGAWCDYPAWTRHCDRPTTLIEVETWATWPDAAIG 71
Query: 56 FVCGVGEQPLYAFDIDSKDEKTANTFKDTF-EILHGTPIVRIGQKPKILIPFRMNKEGIK 114
CG L DID D A+ + ++L TP++RIG+ PK L+ +R +
Sbjct: 72 LACGT----LVGIDIDVLDPDIAHRLERLARDMLGDTPLLRIGKAPKRLLVYRADVPFSG 127
Query: 115 KKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWT-TPPHRFKVEDTPLLSEEDVEYL 173
K+ L+IL G+ FVA+ IHP T + Y W P ++D P+++E+ V
Sbjct: 128 PKRAP------LEILAHGRQFVAFAIHPDTGQPYVWPEDSPLTVALDDLPVVTEDSVRAW 181
Query: 174 FKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVV 233
+ + ++ P+ + + + ++ T + + L+ + +D W+ +
Sbjct: 182 LEAAIALLPTELRPATLESPAASMPSTSPQRGTLAAVRSALAHIPNA--DLDYDSWVRIG 239
Query: 234 MAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDT 280
MAV +G + WS + W +F IG
Sbjct: 240 MAVKGAI--GEEGASLFAAWSAMSAKDVPATTANAWASFRPTTIGAG 284
>gi|292659055|gb|ADE34443.1| D5 family NTPase [Turbot reddish body iridovirus]
Length = 920
Score = 265 bits (678), Expect = 2e-68, Method: Composition-based stats.
Identities = 96/593 (16%), Positives = 193/593 (32%), Gaps = 88/593 (14%)
Query: 206 TNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGS-TYDEEN 264
T ++ A + + W+ V ++ + G + +S + ++
Sbjct: 289 TPADVRALVDMLPASAA-ADRNTWLKVGFCLYQVMDAAEDGLRLWISFSAKCPEKFNATV 347
Query: 265 FNYKWDTF---DFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRF---SDAYNKAMFSI 318
+ W+ + + +++ Y + + A R + M+S
Sbjct: 348 CHDMWERQMRPNMYTVATLRYLAKQYSTEAYD-AWTHSQWMSAERLKLTHVSLASIMYSA 406
Query: 319 YKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNK 378
+ + WYK D +W+ + S+++ V + + +
Sbjct: 407 LSTHYVCGNIKGELWYKFDNG---VWNEKGMNVIRSLISNEAGPIHQVLNKFLAGVASGQ 463
Query: 379 NSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSIT-SDLLDSSSRFLGEQDGILD 437
+ + +R + +S KS+ A + LD++ + +G+ D
Sbjct: 464 VPEPDESFLKCLHRTTFMLGSSPFKSSVMRECAEQFYRDDFVQRLDTNPYMIAFSNGVYD 523
Query: 438 LETGQKVKPTKELYITKSTGTPFVEG---------------------------------- 463
+T E ++++ + G
Sbjct: 524 FKTRTFRPGQPEDMLSRTLPVAYTTGGYGSYVDDILSAATLDPLSNTYNVCALLDNIEIV 583
Query: 464 -------EPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKST 516
+P + + + F EV +YF R V +GGN + + G G +GK+
Sbjct: 584 GNTMTAKQPLCDVIRFYNTTFPDAEVREYFLRQVSHVFVGGNADKVCLFWTGSGNNGKTV 643
Query: 517 LMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLM-GSRIVIISETNENDEINA 575
+ + G+ + + ++ R P ANP L RL G R ++ E N ++ IN
Sbjct: 644 TQTMFEKMLGS-FAVKMST-TVLTGRKPCVTSANPELARLRNGVRWAVMEEPNNDETINP 701
Query: 576 AKIKQMTGGDCMTARLNY--GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF- 632
+K MTG D AR + G SE F + N ++ D A W R V+PF
Sbjct: 702 GPLKSMTGNDSFFARDLWCSGKDTSEIVPMFKLHCICNTLPDIKMADMATWNRVRVVPFE 761
Query: 633 --------------DKPIANR------DASFAQKLETKYTLEAKKWFLKGVKAY-ISKGL 671
D P+ R D F K+ +E W L V+ + + +G
Sbjct: 762 AVFVSGERLEEARRDVPVEQRDCVQVMDKYFVDKI--PLLVEPMAWLL--VQLWGVLQGE 817
Query: 672 DVDI---PEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEY 721
D P ++ +E + + + + D + + + Y
Sbjct: 818 PADAYKTPRKVIQVTKEYEEANNYVRGFADAMMVREPGASVTEMEVYREFKAY 870
>gi|319648623|ref|ZP_08002835.1| hypothetical protein HMPREF1012_03874 [Bacillus sp. BT1B_CT2]
gi|317389271|gb|EFV70086.1| hypothetical protein HMPREF1012_03874 [Bacillus sp. BT1B_CT2]
Length = 629
Score = 265 bits (677), Expect = 2e-68, Method: Composition-based stats.
Identities = 101/601 (16%), Positives = 204/601 (33%), Gaps = 68/601 (11%)
Query: 34 GKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDID--SKDEKTANTFKDTFEILHGT 91
W + + G GF+ + P DID +D + + + +
Sbjct: 62 RTWSTFPTVLKFYNDRDYDGIGFMF-SKDDPFIGIDIDHCVEDGVLSPFAEKIVQAIGSY 120
Query: 92 P-IVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTW 150
G+ + I + ++ + L++ G+YF
Sbjct: 121 TEYSPSGKG--VHIITKGKIPLRGPGTGRKNPELGLEVYRHGRYFTFTGNSLGIG----- 173
Query: 151 TTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLV--KDKKSIIPSKTWTNNNNRQYTNR 208
P + ++ L E+ ++ + Q + P +D ++ + W R + ++
Sbjct: 174 ---PVEERTDELKELFEKYLKDKKEEQQPSSPPAAASRDMSNLSNKEIWE----RMFNSK 226
Query: 209 EITAFLSCFGEEFYNGSH---DEWIPVVMAVHHE---------TRGSSKGKEIARR-WSK 255
+ F N H D + +A + R S +E R S
Sbjct: 227 NGKSIQDLFNGHLINDDHSATDMALCNHLAFWTDKDPAKMDSMFRESGLYREKWDRQHSS 286
Query: 256 QGSTYDEENFNYKWDTFDFEEIGDTAKKRS---------TFTSLFYHHGKLIPKGLLASR 306
G+TY E + +++ S ++I +
Sbjct: 287 DGATYGEMTIAAAVYSTHTTISDLMEEQQEQPYEVYISHPENSKVEDTEEIIDTPPVF-H 345
Query: 307 FSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDV 366
++ N Y + Y + W N W + +I + K
Sbjct: 346 LTELGNAERIVYYHGKNIRYCNEL-DWLIW---NGKRWEEDSKRKIEAI-----TAKTLR 396
Query: 367 FDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSS 426
E +K K + R+N+ N L+ + S+ LDS
Sbjct: 397 ALYGEAKATEDKFRKKQLNDWAKKCERRNIRMN-------TILDVRPMVSVRKQELDSHK 449
Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESE------ 480
+G++DL+TG+ + ++L TK + + + + F +
Sbjct: 450 YLFNCDNGVIDLKTGELLPHDRDLLFTKISPIAYQTDADCPNWKTFLESIFIDDQGTPNY 509
Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540
E++D+ + +G +L G Q + G G +GKST +N +++ FG+ Y + ++
Sbjct: 510 EIIDFMQKAIGYSLTGDTTEQVMFFLFGNGRNGKSTFINTVQHLFGD-YGRQTNSDTFIK 568
Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600
+ A N + RL G+R V E+ E +++ + +KQ+TGG+ M+AR + +
Sbjct: 569 KKNDSA--INNDIARLDGARFVSAVESEEGQQLSESLVKQITGGEKMSARFLRQEYFEFT 626
Query: 601 P 601
P
Sbjct: 627 P 627
>gi|219855955|ref|YP_002473077.1| hypothetical protein CKR_2612 [Clostridium kluyveri NBRC 12016]
gi|219569679|dbj|BAH07663.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 787
Score = 265 bits (677), Expect = 2e-68, Method: Composition-based stats.
Identities = 132/651 (20%), Positives = 241/651 (37%), Gaps = 55/651 (8%)
Query: 130 GCGQYFVAYNIHPK----------TKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQE 179
G G + +AY P+ T + + T + ++ ++ ++ +Q+
Sbjct: 135 GKGVHVLAYGYIPRAVKREIEMYNTGRYFALTGDSLAGNKIEN---RQKQLDAIYNIYQK 191
Query: 180 ITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHD-EWIPVVMAVHH 238
L K +P KT + N + N + + +D W +++
Sbjct: 192 DDEAL----KEQLPVKTLQSKNIKFNINELLDKAFASKNGFKIKALYDGSWQN----LYN 243
Query: 239 ETRGSSKGKEIARRWSKQGSTYDEEN-------FNYKWDTFDFEE---IGDTAKKRSTFT 288
+ + + Y + KWD D+ R T+
Sbjct: 244 SQSEADQALANYLAFWLNKDPYLMDEAFRRSGLCREKWDRDDYMTRTINKAIRDCRETYQ 303
Query: 289 SLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTL 348
K + F+D F K Y D K +Y D W
Sbjct: 304 EYMIRTQKETNDFIKNYDFTDLGISKDFKNKYKDILKYAVDIKYYYYWDGKK---WVRDD 360
Query: 349 DK--ITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTA 406
D I + F+ +M + + +D + + + R ++
Sbjct: 361 DGLPIKTLSIKFVENMVVKINQYISKLDDEKEIADMRKV-------RNKLKSARTLDVIY 413
Query: 407 QSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPS 466
+ +A I S ++DS R++ +GI+D+ TG+ + K+L+I+K +V G+ +
Sbjct: 414 KQYKAFEDTHINSKIMDSDVRYINCNNGIVDITTGKILPHDKDLHISKIAEVNYVPGKIN 473
Query: 467 QEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF 525
F + F E ++ F +G L G + F I GV +GK+ + LI F
Sbjct: 474 SLFKASIDRLFNGDNEEIEAFEILLGYMLSGRANQKIFPIIHGVRNTGKTQIFELILNTF 533
Query: 526 GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGD 585
G+ YV + + S +M+ +G ANP L L G R++I SET+++D ++ +K++ GGD
Sbjct: 534 GSDYVKSIDKSLLMKAWNKNSG-ANPELAELQGVRLLICSETSDSDYLDTDFMKKIVGGD 592
Query: 586 CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIP--FDKPIANRDASF 643
+ AR Y +P +F P I NK DDA R IVI + + D F
Sbjct: 593 TIKARPLYKPPIEFTP-NFVPVIFTNKKPSFDGNDDALVIRIIVIELLYSLEKNDIDPDF 651
Query: 644 AQK-LETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCD 702
+K LE K + + + + G + P+ +KEE + + Y + D
Sbjct: 652 KRKVLEDKE--GLFSYIISCIVKFTKTG-KLKFPQRWADSKEEYAKENNPYGRFKDIYFS 708
Query: 703 IGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKR 753
+ + + E+ Y + S + +T K G G+ +
Sbjct: 709 DLPGHNLPAKEVYPIFEEW--YLNEYSKNVPSRKKITQGFKALGIKTGMTK 757
>gi|153955563|ref|YP_001396328.1| hypothetical protein CKL_2948 [Clostridium kluyveri DSM 555]
gi|146348421|gb|EDK34957.1| Phage-related protein [Clostridium kluyveri DSM 555]
Length = 768
Score = 264 bits (675), Expect = 4e-68, Method: Composition-based stats.
Identities = 132/651 (20%), Positives = 241/651 (37%), Gaps = 55/651 (8%)
Query: 130 GCGQYFVAYNIHPK----------TKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQE 179
G G + +AY P+ T + + T + ++ ++ ++ +Q+
Sbjct: 116 GKGVHVLAYGYIPRAVKREIEMYNTGRYFALTGDSLAGNKIEN---RQKQLDAIYNIYQK 172
Query: 180 ITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHD-EWIPVVMAVHH 238
L K +P KT + N + N + + +D W +++
Sbjct: 173 DDEAL----KEQLPVKTLQSKNIKFNINELLDKAFASKNGFKIKALYDGSWQN----LYN 224
Query: 239 ETRGSSKGKEIARRWSKQGSTYDEEN-------FNYKWDTFDFEE---IGDTAKKRSTFT 288
+ + + Y + KWD D+ R T+
Sbjct: 225 SQSEADQALANYLAFWLNKDPYLMDEAFRRSGLCREKWDRDDYMTRTINKAIRDCRETYQ 284
Query: 289 SLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTL 348
K + F+D F K Y D K +Y D W
Sbjct: 285 EYMIRTQKETNDFIKNYDFTDLGISKDFKNKYKDILKYAVDIKYYYYWDGKK---WVRDD 341
Query: 349 DK--ITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTA 406
D I + F+ +M + + +D + + + R ++
Sbjct: 342 DGLPIKTLSIKFVENMVVKINQYISKLDDEKEIADMRKV-------RNKLKSARTLDVIY 394
Query: 407 QSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPS 466
+ +A I S ++DS R++ +GI+D+ TG+ + K+L+I+K +V G+ +
Sbjct: 395 KQYKAFEDTHINSKIMDSDVRYINCNNGIVDITTGKILPHDKDLHISKIAEVNYVPGKIN 454
Query: 467 QEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF 525
F + F E ++ F +G L G + F I GV +GK+ + LI F
Sbjct: 455 SLFKASIDRLFNGDNEEIEAFEILLGYMLSGRANQKIFPIIHGVRNTGKTQIFELILNTF 514
Query: 526 GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGD 585
G+ YV + + S +M+ +G ANP L L G R++I SET+++D ++ +K++ GGD
Sbjct: 515 GSDYVKSIDKSLLMKAWNKNSG-ANPELAELQGVRLLICSETSDSDYLDTDFMKKIVGGD 573
Query: 586 CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIP--FDKPIANRDASF 643
+ AR Y +P +F P I NK DDA R IVI + + D F
Sbjct: 574 TIKARPLYKPPIEFTP-NFVPVIFTNKKPSFDGNDDALVIRIIVIELLYSLEKNDIDPDF 632
Query: 644 AQK-LETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCD 702
+K LE K + + + + G + P+ +KEE + + Y + D
Sbjct: 633 KRKVLEDKE--GLFSYIISCIVKFTKTG-KLKFPQRWADSKEEYAKENNPYGRFKDIYFS 689
Query: 703 IGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKR 753
+ + + E+ Y + S + +T K G G+ +
Sbjct: 690 DLPGHNLPAKEVYPIFEEW--YLNEYSKNVPSRKKITQGFKALGIKTGMTK 738
>gi|83309457|ref|YP_419721.1| hypothetical protein amb0358 [Magnetospirillum magneticum AMB-1]
gi|82944298|dbj|BAE49162.1| hypothetical protein [Magnetospirillum magneticum AMB-1]
Length = 757
Score = 263 bits (673), Expect = 7e-68, Method: Composition-based stats.
Identities = 70/302 (23%), Positives = 117/302 (38%), Gaps = 39/302 (12%)
Query: 10 AKQAIHNGFKLIPLRLGDKRPQRL--GKWEE------------QLLSSEKIDKLPACGFG 55
+ + NG+ IP+ G K+P R G W + L+ E P G
Sbjct: 12 GARLVDNGYPAIPIWPGTKKPGRFQAGAWCDYPAWTRHCDRPTTLIEVETWATWPDAAIG 71
Query: 56 FVCGVGEQPLYAFDIDSKDEKTANTFKDTF-EILHGTPIVRIGQKPKILIPFRMNKEGIK 114
CG L DID D A+ + ++L TP++RIG+ PK L+ +R +
Sbjct: 72 LACGT----LVGIDIDVLDPDIAHRLERLARDMLGDTPLLRIGKAPKRLLVYRADVPFSG 127
Query: 115 KKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWT-TPPHRFKVEDTPLLSEEDVEYL 173
K+ L+IL G+ FVA+ IHP T + Y W P ++D P+++EE V
Sbjct: 128 PKRAP------LEILAQGRQFVAFAIHPDTGQSYVWPEDSPLTVALDDLPVVTEESVRQW 181
Query: 174 FKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVV 233
+ ++ + PS + + + ++ T + + L+ + +D W+ +
Sbjct: 182 LDAAIALLPDDLRPATLVSPSVSMPSTSPQRGTLAAVRSALAHIPNA--DLEYDSWVRIG 239
Query: 234 MAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYH 293
MA+ G + WS + W +F IG YH
Sbjct: 240 MAMKGAI--GEDGASLFAAWSAMSAKDVPAATAKAWASFRPTTIG---------AGTLYH 288
Query: 294 HG 295
H
Sbjct: 289 HA 290
>gi|304407256|ref|ZP_07388909.1| phage/plasmid primase, P4 family [Paenibacillus curdlanolyticus
YK9]
gi|304343697|gb|EFM09538.1| phage/plasmid primase, P4 family [Paenibacillus curdlanolyticus
YK9]
Length = 808
Score = 263 bits (672), Expect = 8e-68, Method: Composition-based stats.
Identities = 122/826 (14%), Positives = 264/826 (31%), Gaps = 99/826 (11%)
Query: 10 AKQAIHNGFKLIPLRLGD----------------KRPQRLGKWEE-QLLSSEKIDKL--- 49
+ I + +IPL D KRP L +W+ + I+
Sbjct: 11 IQDYISRSWPIIPLCPPDHQHVSDKHKDQCRSPGKRPL-LREWQHISVPDWASINHWFKK 69
Query: 50 -PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIG-QKPKIL-IPF 106
P G V G + A D+D + ++ G + P L +
Sbjct: 70 YPTANIGLVLGSPSG-IVAIDVD-----GDKGTELLQQMSGGDLPDTVSFSTPNGLRYLY 123
Query: 107 RMNKE---GIKKKKTTESTQGHLDILGCGQYFV-AYNIHPKTKKEYTWTTPPHRFKVEDT 162
R K+ ++G G V +IH + K Y W P ++ +
Sbjct: 124 RAPAGITLKKHKRSDPSLPHNECALMGEGNLTVLPPSIHH-SGKTYEWIKHPKDVEIAEA 182
Query: 163 PLLSEEDVEYLFKFFQEI--TVPLVKDKKSIIPSKTWTNNNNR--QYTNREITAFLSCFG 218
P + + LV K S+ P + + Q++ I S
Sbjct: 183 PSWMVSLMTPSLSAAHSMQNRTSLVLPKASVDPDLLLADFAAKCSQFSADWIQQQGSGIA 242
Query: 219 EEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIG 278
E+ + +WI + T + +A +S+ +++ + +E
Sbjct: 243 EDAWF----DWIRTL------TNAGAPDAALA--FSQASPKHNQASETRI--HNLVQEGS 288
Query: 279 DTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKA------ 332
+ + STF + I + D + S L
Sbjct: 289 KSMTRCSTFG----CSEQQISQC-FHKINRDEQGRVKNSPGGLVRGLLNPTEARKPNLQT 343
Query: 333 -WYKKDKNNVYIWSLTLDKITASIMNFLVSMK----EDVFDLSEEPEDNNKNSKSPRFWF 387
+ D L + ++ +++K E + ++ ++ R
Sbjct: 344 IGFYIDPKKGTPKGLNSNAFVRYVVKDRLTIKFCAPERFYSFAKGIWKYMDENELARLLR 403
Query: 388 NTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPT 447
+ ++ +S + L A + + + +D+ +L ++G+L+L T +
Sbjct: 404 EILHEFVPDFWTTRLES--EYLAAIAREAPRVEKMDAERNYLNLENGMLNLSTLELEPHR 461
Query: 448 KELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHI 506
E T + EFL+ +S F EE++D G L +A +
Sbjct: 462 PEALSTVRVPIWYDMNAECPEFLEFLSVIFDGDEELIDLVAEIFGYCLTTETRAHKAFIF 521
Query: 507 RGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISE 566
G G +GKS L+ ++K G + + ++ S L+ + + +E
Sbjct: 522 YGKGSNGKSVLIEMLKCLIGKANISSLTLGEL---------DKPFSRYGLVDKLLNVATE 572
Query: 567 TN-ENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625
+ ++ K + G+ + + +S +P N + ++ + R
Sbjct: 573 NEVSSSALDTTYFKAIVSGEEIQVEKKHEQGFSYAPYC-KLVFALNNLPYSKDKSFGFRR 631
Query: 626 RYIVIPFDKPIAN--RDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAK 683
R I++PF+K D KL+ K + LKG+ + +A
Sbjct: 632 RLIIVPFNKTFEEGKADVFLQDKLK-KELPGILNFALKGLVRLRKNRYKFSSSKAVDEAL 690
Query: 684 EEERQGTDTYQAWIDDCCDIGENL-WEESHSLAKSYSEYREQEL---NYDRKRISTRTVT 739
+ + Q ++ + ++ + + ++ ++ ++ NY + ++S +
Sbjct: 691 QAYTDTLNPVQRFVREKLSAADSSCRIRYNKIMSAFDDWADKNGHQNNYSQAKLSD-LIK 749
Query: 740 LNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDNSNII 785
LK +G + R ++G+ L + ++
Sbjct: 750 DCLKAQGITFETFKSG------GLRGLQGISLVS--DEQEERYGFT 787
>gi|167630917|ref|YP_001681416.1| primase, putative [Heliobacterium modesticaldum Ice1]
gi|167593657|gb|ABZ85405.1| primase, putative [Heliobacterium modesticaldum Ice1]
Length = 833
Score = 263 bits (672), Expect = 9e-68, Method: Composition-based stats.
Identities = 70/397 (17%), Positives = 148/397 (37%), Gaps = 24/397 (6%)
Query: 380 SKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITS-DLLDSSSRFLGEQDGILDL 438
+ R +E + + + + ++ + + ++G+ ++
Sbjct: 453 KAASDLQAAARVRGHLIERYATMSAINDTEGQWRMLIYKPIREINCNPFIINLKNGLYNV 512
Query: 439 ETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGN 498
G T E Y T + E +F+ + E + G L+ N
Sbjct: 513 LDGSFKAHTPEYYSTVQLKASYNENAECPKFMAFLQSILGDTE-IHLMQEIFGYLLIPVN 571
Query: 499 KAQRFIHIRGVGGSGKSTLMNLIKYAF-GNQYVINAEASDIMQNRPPEAGKANPSLIRLM 557
KAQ+ + G +GKSTL+++ + G++ V N ++ L
Sbjct: 572 KAQKSFVLVGAPNAGKSTLLSVAQEILLGSENVSNIP---------WQSLSDRFKTAELF 622
Query: 558 GSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLF-V 616
G I ++ + K +TG D +TA N +S P + F N+
Sbjct: 623 GKLANIFADLPSKSVDDNGIFKALTGEDYITAERKNKNPFSFKPYARLLF-SCNEIPRNY 681
Query: 617 RNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD 674
+ + ++RR I+I F+ P+ RD + +KL ++ W L+G+K I+ G
Sbjct: 682 GDRSEGFYRRLIIIRFENPVPPEKRDPNLIEKLASER-DGIFMWALEGLKRLIANGYAFS 740
Query: 675 IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIS 734
E + + +++ +++++CC + + L ++Y +Y L K +S
Sbjct: 741 ETEGTKAELQRYKVESNSALSFVEECCVLEDEAECVREELFQAYRDYC---LKNGFKPMS 797
Query: 735 TRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771
+++ G EK+ + +G++L
Sbjct: 798 QANFNKDIESLGERVERGLEKVSRRKT----WRGIRL 830
>gi|296446071|ref|ZP_06888020.1| phage/plasmid primase, P4 family [Methylosinus trichosporium OB3b]
gi|296256430|gb|EFH03508.1| phage/plasmid primase, P4 family [Methylosinus trichosporium OB3b]
Length = 578
Score = 263 bits (671), Expect = 1e-67, Method: Composition-based stats.
Identities = 77/428 (17%), Positives = 146/428 (34%), Gaps = 33/428 (7%)
Query: 346 LTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKST 405
++ N + D + + R R V + A+
Sbjct: 134 PAEARVIEEADNLAADDESDGAKAVRRAAAAAEKALEKRRLARW---RFAVSSKNSARLV 190
Query: 406 AQSLEAGSIFSITSDLLDSSSRFLGEQDGIL---------------DLETGQKVKPTKEL 450
A A +S S + Q+ L D+ G +E
Sbjct: 191 AMLKTAAPHLRREPGGFNSESMLIVTQNATLRVIVEEIGGKKEARLDVRRG----FARED 246
Query: 451 YITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVG 510
Y T F + ++ + S ++ + G+ L+G Q+ + G G
Sbjct: 247 YATGLVPCDFDLMAKAAKWDAFLLRCLPSADMRRTVRQYAGLGLVG-TLLQKLMFHHGFG 305
Query: 511 GSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN 570
+GKS + +I G Y ++ I+ AG+A+P ++RL G R V I E E+
Sbjct: 306 ANGKSVFLAVISGVIGKSYGVSLPKETILGRGERGAGQASPDIVRLFGKRFVRIDELKED 365
Query: 571 DEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVI 630
+ + +K++TGGD M R + + + + TP + N + D+ WRR +V+
Sbjct: 366 ESLREDLVKRLTGGDEMAVRNLFEGYFDFANRA-TPHMSGNGFPKIDGTDNGIWRRMLVV 424
Query: 631 PFDKPIANRDASFAQKLETKYT---LEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEER 687
+ I + + W L GV Y+ GL PE A + +
Sbjct: 425 HWSVTIPPEERREFDGFVAELLEERSGILNWLLDGVLDYLEHGL-FIAPE-IAAATSKYQ 482
Query: 688 QGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGF 747
+ + +I DC + E + + ++Y + ++ + + + F
Sbjct: 483 EEMNPIGEFIKDCVEAHEGERVAASTAYQAYVSWSMAN---AKRAKTQTAFGREMAKL-F 538
Query: 748 IGGIKREK 755
R +
Sbjct: 539 KRDNDRAR 546
>gi|109287999|ref|YP_654693.1| hypothetical protein MIV121R [Invertebrate iridescent virus 3]
gi|123808611|sp|Q196T9|VF184_IIV3 RecName: Full=Putative helicase 121R
gi|106073622|gb|ABF82151.1| hypothetical protein MIV121R [Aedes taeniorhynchus iridescent
virus]
Length = 941
Score = 258 bits (658), Expect = 3e-66, Method: Composition-based stats.
Identities = 104/646 (16%), Positives = 202/646 (31%), Gaps = 84/646 (13%)
Query: 179 EITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHH 238
++ +P K + N+ + ++ L ++ N ++ W + + + +
Sbjct: 276 DLKIPTKIYLKQELKDIEGENSETIKRNLKDAKDLLKILNKKRAN-EYNSWWDIGIILFN 334
Query: 239 ETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTF--------DFEEIGDTAKKRSTFTSL 290
G I +WS YD + W++ + +G
Sbjct: 335 IGHGCEDAFTIWDKWSSYSDKYDPDACVQVWNSMHLRNPRFSKIKGMGSLRWYVKQDNLK 394
Query: 291 FYHHGKLIPKGLLASR-------------FSDAYNKAMFSIYKKGHFLYTADTKAWYKKD 337
Y GL+ +D + G Y WY +
Sbjct: 395 GYTAWVDKMHGLVLDEKNLVECVTRLEIMTTDTPLARLMLDLYSGE--YVFSDAGWYSFN 452
Query: 338 KNNVYIWSLTLDKIT--ASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQN 395
+ D I M++ + +L D++ Q
Sbjct: 453 GTIWSPVKVLKDFRVKFEHISTKYKEMRKRIMELIYHKNDDSGRDSEEDSQEEEVSSSQE 512
Query: 396 VEENSKAKSTAQSLEA--------------GSIFSIT---------SDLLDSSSRFLGEQ 432
I + SDLLD + + +
Sbjct: 513 QLSAKHRAILMAKYRDINRAINKLENFATQNGILKMCEVFFYNEDFSDLLDENPLLIAFK 572
Query: 433 DGILDLETGQKVKPTKELYITKSTGTPFVEG--EPSQEFLD---LVSGYFESEEVMDYFT 487
+G+ D ET K + Y++K+ + + + S+E L+ +S F E+V YF
Sbjct: 573 NGVFDFETLTFRKGLQSDYLSKTLNIRYDDTLTDDSEEVLELYNFLSKIFPDEKVRAYFV 632
Query: 488 RCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAG 547
+ GGN+ + + G G +GKS L + G + + S + + P G
Sbjct: 633 DQICEVFRGGNRDKIAMFWTGNGNNGKSVTQRLFETMIGKKLAVKLSTSVLTERIQP--G 690
Query: 548 KANPSLIRLMGS-RIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN--TYSESPASF 604
+ NP L RL G R + E + ++I + + +TGGD + R + S+ F
Sbjct: 691 QPNPQLTRLRGGIRWGVFDEWGKTEQILSGSLNVLTGGDSLPCRDLFQKGSDSSDFTPMF 750
Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR------------------DASFAQK 646
+ N+ +++ DA W R +IPF+ R D QK
Sbjct: 751 KLLCICNELPCLKDAVDATWDRIRIIPFESKFVAREKCPETEQEQREKKLFLCDTEITQK 810
Query: 647 LETKYTLEAKKWFL-----KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCC 701
+ A W+L + K + V IP+ AK + + D ++++
Sbjct: 811 DRMESLARALGWYLVKIFKEKEKKRRNGTYQVTIPDKVNDAKLKYQAKCDILAFFMEETY 870
Query: 702 DIGEN--LWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK 745
+N + S+ + + ++ ++ K
Sbjct: 871 LKTDNQDHKIPFDDMYISFKNWYINSFSGKMVTLNKHEFIEMVRNK 916
>gi|282164445|ref|YP_003356830.1| hypothetical protein MCP_1775 [Methanocella paludicola SANAE]
gi|282156759|dbj|BAI61847.1| hypothetical protein [Methanocella paludicola SANAE]
Length = 439
Score = 258 bits (658), Expect = 3e-66, Method: Composition-based stats.
Identities = 90/449 (20%), Positives = 160/449 (35%), Gaps = 25/449 (5%)
Query: 282 KKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNV 341
+ T TS F + P L ++++A F + Y + + N
Sbjct: 11 ESLQTLTSAFKNEAGNPPAVEL--KYTEACMAHWFDFFYNKDVKYVVEDDRFLVW---NG 65
Query: 342 YIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSK 401
W L D ++ + M + +E +D + + + Y N +
Sbjct: 66 RYWEL--DDRNTNVRRLISLMAPEFQARTEHIKDEKARNAAFK------YTNSLENTNRQ 117
Query: 402 AKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP--TKELYITKSTGTP 459
Q + I + LD +SR + +G+LDL+ G + TKE+Y T
Sbjct: 118 NGIIIQLKSEATGLFIKKNDLDKNSRMINCLNGVLDLDKGTLIHHEQTKEMYFTHIYNVK 177
Query: 460 FVEGEPSQEFLDLVSGY-FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLM 518
+ F ++ E ++ Y +G + G Q +G G +GK L
Sbjct: 178 YDPEAICPLFDKFLNEITCEDADLKKYLLTSLGYCISGRTDKQLAFIFKGAGRNGKGVLR 237
Query: 519 NLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKI 578
++I++ + Y I + E L + RI+ ++E + N A I
Sbjct: 238 DVIEHIL-DGYAIEKPGKVFSKKHEGEG---RFDLYDTIEKRIIFVNEPADGSAFNEALI 293
Query: 579 KQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI-- 636
KQ GGD + A Y + + P T I+ N + N A RR VIPF+ I
Sbjct: 294 KQYAGGDMIPAERKYCDPFMFKPCG-TLIILTNTTPKM-NKSLAMSRRIRVIPFNLNIDD 351
Query: 637 ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAW 696
N D KL K ++G + + ++ E A E+ D A+
Sbjct: 352 ENDDVELKDKLL-KEISGILNRLIEGYMSCDGEANPKNMVEAVADATEDVWNEADMVAAF 410
Query: 697 IDDCCDIGENLWEESHSLAKSYSEYREQE 725
++ C E ++ + + ++ E
Sbjct: 411 VNTCIFRDEKSTMDNAVMYLEFKKFCMNE 439
>gi|320094352|ref|ZP_08026140.1| hypothetical protein HMPREF9005_0752 [Actinomyces sp. oral taxon
178 str. F0338]
gi|319978740|gb|EFW10295.1| hypothetical protein HMPREF9005_0752 [Actinomyces sp. oral taxon
178 str. F0338]
Length = 883
Score = 253 bits (646), Expect = 8e-65, Method: Composition-based stats.
Identities = 87/529 (16%), Positives = 172/529 (32%), Gaps = 71/529 (13%)
Query: 279 DTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDK 338
DT R+ + + + G LY+ W
Sbjct: 371 DTDSVRTVIAKTAEDTDSALADWCEP-----RLAGRLEYVSGAGFRLYSPSRGTW----- 420
Query: 339 NNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEE 398
K A + + M + + ++K ++ R +
Sbjct: 421 ------ETDNSKDNARTIKLVEDMLRERH-MGIVKSGDSKRTQRDR------------KN 461
Query: 399 NSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGT 458
+K K A + D D++ L +G++DL TG + T+ T
Sbjct: 462 LNKGKIEAVTRLLQGRLLHGPDEYDANPDILNVGNGVVDLRTGTLLPHAPSYRCTQYTPV 521
Query: 459 PFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQ---RFIHIRGVGGSGKS 515
P++ +++ ++ E +F R VG A G + G+G +GK+
Sbjct: 522 PYLPEASHEDWKAALAAL--PAESRPWFRRWVGQAATGYTPREDNTMLGIAAGIGANGKT 579
Query: 516 TLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA 575
TL+ ++ A G Y A ++ N + + L G R V+I E E ++
Sbjct: 580 TLLTAVRLALGT-YAGTAAMDLLLS----SPRNTNNTKMALYGKRFVLIEELPEG-RLDG 633
Query: 576 AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP 635
++K +TG + + L + + + E A+ + + N V + WRR V+ F
Sbjct: 634 VQVKAVTGTELIRGNLKFKDEF-EWRATHSLIVTTNNLPTVSEFSEGLWRRPFVLEFPYR 692
Query: 636 I-------ANR--DASFAQKLETKYT---LEAKKWFLKGVKAYISKGLDV-DIPEVCLKA 682
A+R DA Q+L + W ++G + G V +P A
Sbjct: 693 FTSNPQAEADRPGDAGLTQRLLAPESPALPAVLAWVVRGAVEFYEHGQQVGALPAPISSA 752
Query: 683 KEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNL 742
++ +D A+ +C L ++ + ++ S RT +
Sbjct: 753 TASWQEQSDVLLAFASECLVKDAGAVVPGSHLYAAFEAWLSEQGAAS---WSQRTFRGRI 809
Query: 743 KQKGFIGGIKR--------------EKIEKEWKSKRIIKGLKLKPAFES 777
G+ +K + R +G++ + + +
Sbjct: 810 ASHGYFRDVKEGTHRWKKLTLSTWGAEAHPTADKVRGYRGIRFRTSEDE 858
>gi|315606065|ref|ZP_07881096.1| phage/plasmid primase [Actinomyces sp. oral taxon 180 str. F0310]
gi|315312347|gb|EFU60433.1| phage/plasmid primase [Actinomyces sp. oral taxon 180 str. F0310]
Length = 897
Score = 253 bits (646), Expect = 9e-65, Method: Composition-based stats.
Identities = 90/541 (16%), Positives = 179/541 (33%), Gaps = 71/541 (13%)
Query: 267 YKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLY 326
++ DF + DT + R+ + + + G LY
Sbjct: 373 REYAGTDFPQEPDTDRVRTVIAKTAEDTDSALADWCEP-----RLAGRLEYVSGAGFRLY 427
Query: 327 TADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFW 386
+ W K A + + M + + ++K ++ R
Sbjct: 428 SPSRGTW-----------ETDNSKDNARTIKLVEDMLRERH-MGIVASGDSKRTQRDR-- 473
Query: 387 FNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP 446
+ +K K A + + D D++ L +G++DL TG+
Sbjct: 474 ----------KNLNKGKIEAVTRLLQGRLLHSPDEYDANPDILNVGNGVVDLRTGELHPH 523
Query: 447 TKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQ---RF 503
T T+ T P+ +++ ++ E +F R VG A G +
Sbjct: 524 TAAYRCTQYTPVPYRPAAIHKDWTAALAAL--PAESHPWFRRWVGQAATGYTPREDNTML 581
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVI 563
G+G +GK+TL+ ++ A G Y A ++ N + + L G R V+
Sbjct: 582 GIAAGIGANGKTTLLTAVRLALGT-YAGTAAMDLLLS----SPRNTNNTKMALYGKRFVL 636
Query: 564 ISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAW 623
I E E ++ ++K +TG + + L + + + E A+ + + N V +
Sbjct: 637 IEELPEG-RLDGVQVKAVTGTELIRGNLKFKDEF-EWRATHSLIVTTNNLPTVSEFSEGL 694
Query: 624 WRRYIVIPFDKPI-------ANR--DASFAQKLET---KYTLEAKKWFLKGVKAYISKGL 671
WRR V+ F A+R DA Q+L W ++G + + G
Sbjct: 695 WRRPFVLEFPYRFTSNPQAEADRPGDAGLTQRLLAPDSPALPAVLAWVVRGAVEFYAHGQ 754
Query: 672 DV-DIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDR 730
V +P A ++ +D A+ +C L ++ + ++
Sbjct: 755 QVGALPAPISSATASWQEQSDVLLAFASECLVKDAGAVVPGSHLYAAFEAWLSEQGAAS- 813
Query: 731 KRISTRTVTLNLKQKGFIGGIKR--------------EKIEKEWKSKRIIKGLKLKPAFE 776
S RT + G+ +K + R +G++ + + +
Sbjct: 814 --WSQRTFRGRIASHGYFRDVKEGTHRWKKLTLSTWGAEARPTADKVRGYRGIRFRTSED 871
Query: 777 S 777
Sbjct: 872 E 872
>gi|51245423|ref|YP_065307.1| hypothetical protein DP1571 [Desulfotalea psychrophila LSv54]
gi|50876460|emb|CAG36300.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54]
Length = 593
Score = 252 bits (643), Expect = 2e-64, Method: Composition-based stats.
Identities = 87/510 (17%), Positives = 178/510 (34%), Gaps = 76/510 (14%)
Query: 308 SDAYNKAMFSIYKKGHFLYT---ADTKAWYKKDKNNVYIWSLTLDKITASI--------- 355
++ + + + K +LY D WYK ++W L T +
Sbjct: 49 NERGDGLLLAAILKDRYLYVTAPDDKGEWYKWVG---HVWQLDEFDTTVDVAEQVALAYE 105
Query: 356 ----------MNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFN----------------T 389
L + E+ + + + + +
Sbjct: 106 EYAFHVEAQRDQELAKLDEERNEKIAMIKAECEEEDAKKKIDTLLQKPLVPPKWMTSTIK 165
Query: 390 DYRRQNVEENSKAKSTAQSLEA---GSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP 446
DY ++ S+ + A + SD LD L +G+LDL+ G +
Sbjct: 166 DYNKRAWVLRSRERIMKARFFAPKVDRRIAAISDDLDQKKWLLPCANGVLDLKRGLLMDG 225
Query: 447 TKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVM------DYFTRCVGMALLGGNKA 500
+TK + F +++ E+ + R G A+ G
Sbjct: 226 RPSDLLTKQIDVAYNPDADYSFFEEIIKDICVCPEIEGTDLLPAFLKRLFGYAITGNVNE 285
Query: 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSR 560
+ G G +GK T++ I G Y + I Q P + + L G R
Sbjct: 286 EFLAIFIGPGRNGKGTILETITSVLGAYYHQANRSLFIEQKFEPPPSATSEHMYALQGKR 345
Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
+V+ +ETN+ +I+ IK +TGG+ + R N+ + + +P + T + N + +
Sbjct: 346 LVVGAETNKGQKIDGGLIKGITGGNKVNYRKNFKSEKTFTP-THTLILETNNIPYGLTKE 404
Query: 621 DAWWRRYIVIPFDKP----IANRDASFA---------------QKLETKYTLEAKKWFLK 661
+ +R +++ F I + + + + KW ++
Sbjct: 405 FSLTQRLVLVDFPFRYVDDIEAEERKYPALKGRFKKKNKDLKAKLKSRESREGVLKWLVE 464
Query: 662 GVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCD---IGENLWEESHSLAKSY 718
G + GL IP+ L+A+E+ + D ++ + + EN+ E L +++
Sbjct: 465 GCLEWDEHGLL--IPDCVLQAREDLTKKEDYIGQFLGEIVEHVPDRENMRMEFKYLYEAF 522
Query: 719 SE-YREQELNYDRKRISTRTVTLNLKQKGF 747
+++ + D K T++ LK++G+
Sbjct: 523 QYFWKDTIDSRDNKVPHKNTLSKELKERGY 552
>gi|29567083|ref|NP_818646.1| gp108 [Mycobacterium phage Barnyard]
gi|29425808|gb|AAN02162.1| gp108 [Mycobacterium phage Barnyard]
Length = 916
Score = 251 bits (641), Expect = 3e-64, Method: Composition-based stats.
Identities = 88/531 (16%), Positives = 187/531 (35%), Gaps = 52/531 (9%)
Query: 279 DTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKA-----MFSIYKKGHFL-----YTA 328
D +K+S+ S + + A F D ++ A + + G + +
Sbjct: 377 DIPRKQSSPASEYRQND-----DGNADHFIDIWSDANMGPAVRYVKGLGWIIWHKGDHDQ 431
Query: 329 DTKAWYKKDKNNVYIWSL---TLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRF 385
W + + + DK N V + +++ +
Sbjct: 432 RQPHWEVDEDGRGTMRQMFRAVRDKQEGFAENLKVDYTNAMRAFAQQTPGVSAADVREAK 491
Query: 386 WFNTDYRRQNVEE--NSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLE-TG- 441
+++ + N A + ++ + ++ + +D+ L +G+++L TG
Sbjct: 492 SAWSNWHKFATSSGMNRNADNAIAAIATHAGINLDINEIDARPDLLAVANGVVELNPTGA 551
Query: 442 QKVKPTKELYITKSTGTPFVEGEPSQE-----FLDLVSGYFESEEVMDYFTRCVGMALLG 496
+ E Y+T +TG P++ + + + + + +G AL+G
Sbjct: 552 RLRDAEPEDYLTLNTGVPWLHPKEIPNTGQKLWQEYLDKFLPDPSYRRDVQIILGHALIG 611
Query: 497 GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRL 556
N ++ I +G +GKS ++ +I G+ Y S ++ NP L +
Sbjct: 612 SNPHKKLIIFKGAANTGKSVMITMINEVLGD-YAKTTNRSLFTYHK------LNPVLAQA 664
Query: 557 MGSRIVIISETNENDE--INAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHL 614
+ R+V I E + + + ++K TG D + A L N F P +V N
Sbjct: 665 LPKRVVSIVELSRDKRNPLTVDQMKTATGNDYIEAELKGKNATINRVPMFLPIMVTNTVP 724
Query: 615 FVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD 674
+ D A R VI F+ N D + A ++ + W ++G Y
Sbjct: 725 EIEGHDKALRERLRVISFNVVEQNPDDTIAARMRRESRTAVLNWLIEGYNLYCQSERKFP 784
Query: 675 IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYR-----------E 723
+ +E D + +C N+ + S + A+ E+ +
Sbjct: 785 ENDRMRADTDEFASDMDDISLFAKECLKPAPNMDKPSINWARDQVEWCTSRAAVWTRYEQ 844
Query: 724 QELNY---DRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771
+ ++ ++++ T LK+ GF + ++ K+ G+KL
Sbjct: 845 WLFDNHIPEKHKLTSPQFTRRLKELGFNSPQNKVRVNKQL--GYYWLGVKL 893
>gi|206599794|ref|YP_002241983.1| gp90 [Mycobacterium phage Gumball]
gi|206283008|gb|ACI06462.1| gp88 [Mycobacterium phage Gumball]
Length = 977
Score = 250 bits (637), Expect = 1e-63, Method: Composition-based stats.
Identities = 96/553 (17%), Positives = 178/553 (32%), Gaps = 97/553 (17%)
Query: 308 SDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVF 367
SD N + K + Y W + + ++ + E +
Sbjct: 423 SDQGNGDHWIDLHKDNAFYVPALGQWIMWTGKSWIVGDGCAERSYRRVKARQKRYAEQLM 482
Query: 368 DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSR 427
+ E + + + +R A I L+++
Sbjct: 483 RRAAELKAAQDPTANAAVAMAKSWRSWATRSGDVGPIERALKAASMELGIEEGELNANPA 542
Query: 428 FLGEQDGILDL--------------------------ETG-------------------- 441
+ ++G+L+L G
Sbjct: 543 LICCENGVLELDLSPLDSLADDSQSAGRNGDRGRRNGRNGTANVASLAEDDEEFDLDYEA 602
Query: 442 -------QKVKPTKELYITKSTGTPFVEGEP-------------SQEFLDLVSGYFESEE 481
+ + +E +T STGT ++ + + + V Y EE
Sbjct: 603 VAPNSHVRLREIRREDLLTLSTGTNYLPWQELVAGEFGKQEALYASTWARAVEMYLPDEE 662
Query: 482 VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQN 541
V + + +G +LLG N+ + + + G GSGKST +N A G +Y + +
Sbjct: 663 VRLFLQKLLGYSLLGDNRERIVVFLHGPTGSGKSTFLNATLNALG-EYADVVDLGIFKGD 721
Query: 542 RPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESP 601
R + NP+L + RIV SE ++ + ++A K++TGGD +TA L Y N +
Sbjct: 722 R-----QTNPALAYALPKRIVTCSEASQRNVLHADMFKRITGGDPLTAELKYSNESVKRK 776
Query: 602 ASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETK-YTLEAKKWFL 660
+F P+I N + D A R +V+ F++ I +D L + W +
Sbjct: 777 PAFVPWIATNTPPSIPGADAAVVDRTVVVGFNEQIRKQDVGMNAMLSSPRAKTAVLAWAV 836
Query: 661 KGVKAYISKGLDV-DIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENL------------ 707
+G Y +GL D P E ++ +C +
Sbjct: 837 EGWGMYRREGLRRADFPAAVKGESIEFTNQFSDVSEFLSECVEEAPMSLRRKAERRAWRV 896
Query: 708 -------WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEW 760
+ Y + ++ DR + + LK G+ + E ++K+
Sbjct: 897 CDWPEEWHITVSEVYDVYVTWCQENRVADRNIMKKNGFSRQLKDYGY----RAEVVKKDG 952
Query: 761 KSKRIIKGLKLKP 773
+ R G KL
Sbjct: 953 FTSRTYAGFKLNS 965
>gi|15078896|ref|NP_149647.1| 184R [Invertebrate iridescent virus 6]
gi|82013411|sp|O55768|VF184_IIV6 RecName: Full=Putative helicase 184R
gi|2738452|gb|AAB94479.1| 184R [Invertebrate iridescent virus 6]
Length = 971
Score = 248 bits (632), Expect = 3e-63, Method: Composition-based stats.
Identities = 134/743 (18%), Positives = 250/743 (33%), Gaps = 120/743 (16%)
Query: 101 KILIPFRMNKEG----IKKKKTTESTQGHLDILGCGQYFVAYNIHP--KTKKEYTWTTPP 154
K + + +KEG K K + Q + I C + + P T E+ P
Sbjct: 202 KYWLMYGSSKEGLNKPYKISKILDHNQQEISISKCFKSETCIDGSPITDTNVEFEL---P 258
Query: 155 HRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFL 214
+ P + + Y + ++ + + K ++ +++T+FL
Sbjct: 259 MLLSINPKPSIISNKLFYFKEAPVKL-CDALLPVVNNNREKEGRMSSREIEKMKKLTSFL 317
Query: 215 SCFGEEFYNGSHDEWIPVVMAVHHETRG---SSKGKEIARRWSKQGSTYDEENFNYKWDT 271
S + +++W V + + + G + E + +S Q + YDE + +W
Sbjct: 318 SVSRAD----DYNQWWTVGITLFNIGTGRDCEEEALEAWKMFSSQSTKYDESRCDLEWAE 373
Query: 272 F-------DFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKA---------M 315
+ +G + + L + + + S +
Sbjct: 374 MKKKNRPLNARTMGSLIFMAKSDNPVALEKYLLAEQMNIENWTSHQNLDVESIKKLKVPV 433
Query: 316 FSIYKKGHFL------YTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDL 369
F F+ Y W+K N IWS +L+ + + LVS+ +L
Sbjct: 434 FDTEIAEMFVSQHEDEYLNGNLGWFKF---NGTIWS-SLESVGRHMRPSLVSLSRSYLNL 489
Query: 370 SEEPEDNNKNSKSPRFWFN-----TDYRRQNVEENSKAKSTAQSLE-------------- 410
+ K ++ + + + S K+TA+ +
Sbjct: 490 IPALKYITKTLQNDDEGYEPSDSGFGFDDDDSASTSGGKTTAEITKLVNSKIKLINDLAK 549
Query: 411 --------------AGSIFSITS--DLLDSSSRFLGEQDGILDLETGQKVKPTKELYITK 454
+ I + D +D + + + +G+ DL + E YIT+
Sbjct: 550 KCQNNGPQMSLMKVIEDMIGIDNLNDKMDQNKQLIAFTNGVYDLSLFTFRQGLPEDYITR 609
Query: 455 STGTPFV-----EGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGV 509
P+ E + L+ F EE+ +YF +GGN+ + G
Sbjct: 610 QMTIPYDITLTMENPKVIKMLNFFKKIFPDEELFEYFMLENCEMYIGGNRDKILQIWTGE 669
Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRL-MGSRIVIISETN 568
G +GKS +I+ FG V ++ PP+AG P L R G R ++ E
Sbjct: 670 GDNGKSVTNKIIENKFGKLSVKF--PKGMVTGDPPKAGACFPELTRAQRGVRWAVVDEFA 727
Query: 569 ENDEINAAKIKQMTGG-DCMTAR---LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWW 624
++ +NA IK +TGG D + AR + P F + N +RNPD+A W
Sbjct: 728 PDETVNAGVIKNLTGGIDNLYARDIQQKGKDVIDIDPF-FKLIFICNTIPNIRNPDNATW 786
Query: 625 RRYIVIPFDKPIAN-----------------RDASFAQKLETKYTLEAKKWFL------- 660
R VIPF+ + +D SF +K + EA W+L
Sbjct: 787 NRIRVIPFESTFKDSIDDISLEEQKRDKIFLKDTSFCEKETIRELGEAFAWYLIQVFIKK 846
Query: 661 -KGVKAYISKG--LDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDI--GENLWEESHSLA 715
+ + G + IP +A E + + + +D +I +N
Sbjct: 847 EQARRDARLNGKSFKIKIPAKVNEATELYKAQGNAIADYFNDKFEISDDDNDTINIKLYY 906
Query: 716 KSYSEYREQELNYDRKRISTRTV 738
+ + + Q + I +
Sbjct: 907 QDFLLWFSQTHSNKNVNIDKKKF 929
>gi|55416829|gb|AAV50479.1| helicase III/ VV D5-type ATPase (C-term) [Acanthamoeba polyphaga
mimivirus]
Length = 391
Score = 245 bits (625), Expect = 2e-62, Method: Composition-based stats.
Identities = 85/349 (24%), Positives = 141/349 (40%), Gaps = 33/349 (9%)
Query: 422 LDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLD----LVSGYF 477
LD ++ +G ++G+ DLE G + I+ T ++E + E +
Sbjct: 14 LDENNYLIGFENGVFDLEAGIFRDGCPDDCISLCTNYKYIEIDEDDETFKNINGFLKKIQ 73
Query: 478 ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
+ + +Y + L G N + F + G G +GKS LM L+KY G+ Y +
Sbjct: 74 PDKSMREYILTLLSTCLSGTNSEESFYVLTGSGANGKSKLMELLKYTLGDLY-KPMDIRL 132
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
+ + R + A+P L G R E +DEIN +K TGGD +TAR Y
Sbjct: 133 LTEKRSSSS-SASPELADKKGIRACPFDEPKASDEINTGFMKIFTGGDTITARALYKEPI 191
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR------------------ 639
P F PF++ N+ +++ DD WRR VIPF
Sbjct: 192 YFKP-QFKPFLLCNELPTIKSDDDGTWRRLKVIPFLSKFIKHSEATKKMKKEGLPKNHFW 250
Query: 640 -DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID 698
D S ++KL + LK + Y GL P++ + E R+ D +Q +I
Sbjct: 251 ADTSLSEKLPD-WKQGFMCLLLKYFRKYRKHGLI--HPKLVTQHTVEYRKKCDVFQDFIG 307
Query: 699 DCCDIGENLW--EESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK 745
D +N L ++ E+ + NY K + + + ++ +
Sbjct: 308 DYLVRVDNTKKGISVMDLYQNMREW--YKSNYTGKCPNAKDLRNYVQHR 354
>gi|189499201|ref|YP_001958671.1| P4 family phage/plasmid primase [Chlorobium phaeobacteroides BS1]
gi|189494642|gb|ACE03190.1| phage/plasmid primase, P4 family [Chlorobium phaeobacteroides BS1]
Length = 486
Score = 245 bits (624), Expect = 3e-62, Method: Composition-based stats.
Identities = 63/385 (16%), Positives = 139/385 (36%), Gaps = 20/385 (5%)
Query: 370 SEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFL 429
ED++ + T R ++ + + + T D+ +
Sbjct: 97 WRRVEDDDMEAFLGTAALRTGVPRYRADDYKFRAELLKQFHSEAHL--TQPEPDAGRTLI 154
Query: 430 GEQDGILDLETG--QKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFT 487
Q+G ++ Q + + ++T E + F + +
Sbjct: 155 NLQNGTFEITQHGQQLREFRRADFLTHVLPFECREDAKAPLFRSFIERVLPDPDSQRVLA 214
Query: 488 RCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAG 547
VG + G K ++ + + G G +GKS +++ G+ + + + +R
Sbjct: 215 EFVGYVFIRGLKLEKALMLYGGGANGKSVFFDILLALLGSDNASSYSLASLTDSRNTYYR 274
Query: 548 KANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPF 607
L + SE N ++ A+ KQ+ G+ + ARL YG + +
Sbjct: 275 ------AMLADKLVNYASEI--NSKVEASIFKQLVSGEPVEARLPYGKPFILKEYA-KLI 325
Query: 608 IVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAKKWFLKGVKA 665
N+ +A++RR+++IPF I R D A K+ W L+G++
Sbjct: 326 FNANELPRDVEHTNAYFRRFLIIPFTVTIPEREQDKELAGKIIASELPGVFNWALEGLRR 385
Query: 666 YISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDC-CDIGENLWEESHSLAKSYSEYREQ 724
+ + ++ + A ++ ++ +D+ Q ++D + +E L K Y +
Sbjct: 386 LLQQ-KNLSNCDAARHAVDQYKRESDSVQMFVDGRALEPSGVGFETLGDLYKDYKSFCAD 444
Query: 725 ELNYDRKRISTRTVTLNLKQKGFIG 749
+ + ++ R + L+ GF
Sbjct: 445 DG---YRGLNKRNFSKRLEACGFEK 466
>gi|77463706|ref|YP_353210.1| hypothetical protein RSP_0135 [Rhodobacter sphaeroides 2.4.1]
gi|77388124|gb|ABA79309.1| conserved hypothetical protein [Rhodobacter sphaeroides 2.4.1]
Length = 479
Score = 244 bits (622), Expect = 6e-62, Method: Composition-based stats.
Identities = 61/342 (17%), Positives = 109/342 (31%), Gaps = 30/342 (8%)
Query: 274 FEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAW 333
E + + + + ++ F+ G + D W
Sbjct: 18 PEGVRAQFDQMEDIPPPRPRQPPPAQEDPVEIEVTEDGVARAFTEKYGGTLRFDHDAGRW 77
Query: 334 YKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR 393
Y +++ W L + +
Sbjct: 78 YHWQEDH---WQADTTSRAFEYCRRLARLASE---------------------GAKHSLL 113
Query: 394 QNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYIT 453
+ S A + A ++T + D + +DL TG+ P E IT
Sbjct: 114 STARKASFAGGVERLARADPAHAVTQEAWDRDPWLVACPGETVDLRTGRSAVPRPEDGIT 173
Query: 454 KSTGTPFVEGEPSQEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGS 512
+ E + + VM + + G +L G + + + G GG+
Sbjct: 174 RRVAVAPAAQETCPTWWQFLEDATGADSSVMRFLQQWAGYSLTGITREHTLVFLYGDGGN 233
Query: 513 GKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDE 572
GKS +N + G+ Y A ++ + + L L G+R+V SET E
Sbjct: 234 GKSVFINTLTGLLGD-YAATAGMETFTASK---SDRHPTDLAMLAGARLVAASETEEGRA 289
Query: 573 INAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHL 614
++IKQMTGGD +TAR + ++ +P F +V N
Sbjct: 290 WAESRIKQMTGGDRITARFMRRDFFTYTP-QFKLTLVGNHRP 330
>gi|262113722|emb|CAR95389.1| hypothetical protein [Streptococcus phage phi-m46.1]
Length = 610
Score = 243 bits (620), Expect = 1e-61, Method: Composition-based stats.
Identities = 75/381 (19%), Positives = 127/381 (33%), Gaps = 33/381 (8%)
Query: 261 DEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYK 320
D+ + W + + ++ L P +SD + +
Sbjct: 238 DKAELDTIWGSAVRFYNRTIKTSKGYVAPDAFNRETLKPDD-----YSDVGEAGVLAREY 292
Query: 321 KGHFLYT-------ADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFD----- 368
YT D W + + + D+ A FL + ++ +
Sbjct: 293 ANRLAYTNATDYLYYDGTHWRENKQLALGAVVHFTDEQLAEANAFLETAEKQLQSSGIDE 352
Query: 369 ---------LSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITS 419
L + E + + ++ + ++ A A + S+
Sbjct: 353 LTIKAGGKHLEKAVETPLQLKYLKAYLAAKEFHKFVMKHRDYKNLMAVYNTAKPMLSVEL 412
Query: 420 DLLDSSSRFLGEQDGILDLETGQ--KVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF 477
LDS L + DL G + + E YITK T + L + +
Sbjct: 413 SELDSDDLLLNTPEATYDLRKGINGQQEHNPEDYITKITAVSPSDQGMGLWQETLATFFC 472
Query: 478 ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
+E++DY +GMA +G + I G G +GKST N I G+ Y A
Sbjct: 473 NDQELIDYVQEIIGMAAIGKVYQEHMIIAYGGGANGKSTFWNTIARVLGS-YSGKLSADA 531
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
+ + +P L L G R+VI SE E +N A +KQ+T D + A Y + +
Sbjct: 532 LTMSNKR---NVSPELAELKGKRLVIASEMAEGMRLNTAVVKQITSTDEIQAEKKYKDPF 588
Query: 598 SESPASFTPFIVPNKHLFVRN 618
P S T + N V
Sbjct: 589 HFVP-SHTLVLNTNHLPKVGG 608
>gi|194100701|ref|YP_002003450.1| gp92 [Mycobacterium phage Predator]
gi|192758417|gb|ACF05189.1| gp92 [Mycobacterium phage Predator]
Length = 987
Score = 242 bits (618), Expect = 1e-61, Method: Composition-based stats.
Identities = 102/504 (20%), Positives = 183/504 (36%), Gaps = 65/504 (12%)
Query: 306 RFSDAYNKAMFSIYKKG-----HFLYTADTKAWYKK-----DKNNVYIWSLTLDKITASI 355
R +D N F + D W D++ W L+ D +
Sbjct: 454 RMNDDGNAQHFVDLFTSPGIGPGIRFV-DGMGWIVWSAGSTDRSVQPRWVLSEDGLIRRA 512
Query: 356 MNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEE--NSKAKSTAQSLEAG- 412
+ +E E N + + +K +S + +A
Sbjct: 513 WQRVRDRQEAYVTFLEADVQNQIAQFTAANPNVGASAFPAALKAVQAKLRSWREFAKASG 572
Query: 413 ---------------SIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKE--LYITKS 455
++ + LD+ R +G +G+L+L + + E IT +
Sbjct: 573 NNRNSLAALDAAKALPGVTVDINDLDNDGRLIGVANGVLELGVDEVRRRDAEARDLITLN 632
Query: 456 TGTPFVEGEP--------SQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIR 507
T TP++E E +++ + + + EE+ +G L+GGN + FI ++
Sbjct: 633 TSTPYLEIEDMTGTQKIGVEKWQEYLERFLPDEEIRRTAQVALGHCLIGGNPEKIFIILK 692
Query: 508 GVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISET 567
G +GKST+ NL A G+ Y + A S + K NP L + + R+V+ +E
Sbjct: 693 GESNTGKSTMANLCAAALGD-YAMTAGLSI------YQNHKLNPMLAKALTRRMVVTTEL 745
Query: 568 NENDEINAAKIKQMTGG-DCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRR 626
+E D+I+A+ +K++TGG D ++A L N E F P + N + D A R
Sbjct: 746 SETDKISASMLKRITGGSDLISAELKGSNVLVERVPQFVPIVATNAVPDIEGADKALRNR 805
Query: 627 YIVIPFDKPIANR--DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKE 684
VIPF+ ++ + D A ++ W ++G K Y + P + + +
Sbjct: 806 LYVIPFNVVVSEQEDDKEAAMIMKAVGLPAILNWLVEGYKIYRREKGLPKDPRIIKE-SD 864
Query: 685 EERQGTDTYQAWIDDCCDIGENLWE---------------ESHSLAKSYSEYREQELNYD 729
DT ++D C + S +L K+Y + E
Sbjct: 865 AFAAELDTVSTFVDQCLRKHPTAYADPKFDWTGVGKQWVLTSDALYKTYQRWCETMNVNQ 924
Query: 730 RKRISTRTVTLNLKQKGFIGGIKR 753
R+ + L G+ R
Sbjct: 925 REILDHPKFNKRLLSLGWPKKQMR 948
>gi|94311594|ref|YP_584804.1| Phage/plasmid primase P4-like protein [Cupriavidus metallidurans
CH34]
gi|93355446|gb|ABF09535.1| DNA primase activity [Cupriavidus metallidurans CH34]
Length = 632
Score = 241 bits (616), Expect = 3e-61, Method: Composition-based stats.
Identities = 54/339 (15%), Positives = 122/339 (35%), Gaps = 21/339 (6%)
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESE-- 480
D L Q+ +LD+ TG ++ + + + E + + + F +
Sbjct: 280 DPKPLTLCLQNAVLDIATGSQMPHAPDYWHRNLLDIQYHEDDVCPLWQRFLDETFAGDAD 339
Query: 481 --EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538
E + +G L+ +AQ + + G G +GKS ++ +++ G + +
Sbjct: 340 GSEKKLFLQEFMGYLLVPSTEAQMMLWMIGSGANGKSVVIEVMQSLLGADNHSSVPLDSL 399
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598
Q+ L G E + + I+ A IK + GGD + A + +S
Sbjct: 400 GQDFKK---------AVLQGKLANFCPEISGSRRIDEATIKSIVGGDEIYAEKKGKDGFS 450
Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP--IANRDASFAQKLETKYTLEAK 656
A N V + ++RR ++ F++ + D +KL+ + +
Sbjct: 451 FR-AYARIVAAGNALPDVGDTSHGFFRRLTILRFNRQLSVEEMDRELPEKLKNELS-GIL 508
Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAK 716
W L G+K + + D+P + ++ + ++ +C + +
Sbjct: 509 AWALAGLKRFREQKRFTDVP-SSRAFVSSYKLQSNPVEVFLTECTKVVAGKKTLKSDVYA 567
Query: 717 SYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755
SY + ++ + + ++ L + G+ K
Sbjct: 568 SYKAFCQEGGH---QPLANNKFGAALSELGYAAKASNGK 603
>gi|157310960|ref|YP_001468956.1| putative DNA primase [Corynebacterium phage P1201]
gi|95832108|gb|ABF57508.1| putative DNA primase [Corynebacterium phage P1201]
Length = 881
Score = 241 bits (614), Expect = 5e-61, Method: Composition-based stats.
Identities = 151/874 (17%), Positives = 284/874 (32%), Gaps = 134/874 (15%)
Query: 8 EQAKQAIHNGF-KLIPLRLGDKRPQRLG-----KWEEQLLSSEKIDKLPACGFGFVCGV- 60
E A++ I G+ PL G K P G + E D + G
Sbjct: 30 EVAEEYIRKGWTAPFPLPEGQKSPPIPGVTGGVPYITPERIEELWDGVEGANLGLRLQSD 89
Query: 61 --GEQPLYAFDIDSKDEKTANTFKDTFEILHGTP--------IVRIGQKPKILIPFRMNK 110
G Q + + DID K + E G+ R + P I FR+
Sbjct: 90 VEGSQEIISIDIDHYGTKRGDDHLRELESQLGSLNRDSVWRSTRRGIRNPSGQIFFRVP- 148
Query: 111 EGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDV 170
G+K + + +G V ++ ++ Y W +P F + P + +D+
Sbjct: 149 PGLKWESKACINVDIVQ-MGHRYSVVWPSVSGDSQ--YKWISPEGVF-ADSPPYV--KDL 202
Query: 171 EYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFL---------------- 214
+ + + VK S T + R +L
Sbjct: 203 PEMPEAWVTHLTNGVKRGAFTAKSSRSTFTGSGGDKYRAAIDWLRLNLPGWVSKVSEDGS 262
Query: 215 ----------------SCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKE--------IA 250
F ++ N HD +V AVH R +G I+
Sbjct: 263 SDKSSMSNPLAKVSSGEKFLDDIQNNGHDT---MVSAVHSAIRLGVEGHAGVKVALGTIS 319
Query: 251 RRW------------SKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLI 298
R+ S + ++ + E GD + + + LI
Sbjct: 320 DRFYEAVIEGQRRSRSSAEAEFERAVVGEVERVREEIEAGDLTIFQESADFAVGNLSDLI 379
Query: 299 --------PKGLLASRFS-----DAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWS 345
P+G+ +R S D N +++ Y L + + + + + +
Sbjct: 380 VSAESERKPQGI--TRLSSYGDNDFDNARIYASYWGTDVLVDPNAETSKRFARWSSKMGR 437
Query: 346 LTLD-----------------KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFN 388
T K A V E+ + E+ + +S + +
Sbjct: 438 FTFSSRGEMYNTVAIGLAQRLKYEAEQRELEVMALEEKAAKGQITEEESDMIESLQAMAD 497
Query: 389 TDYRRQNVEENS-KAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDG-ILDL--ETGQKV 444
RR + N+ L + +++ DS +LG G LDL ET +
Sbjct: 498 NLNRRSSRLLNTPAMNHVLDQLSSIDEIKVSALDFDSIGEYLGVAGGKTLDLSEETFRVR 557
Query: 445 KPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFI 504
K +T ST F + + + + + + + +G +L+ GN + +
Sbjct: 558 DSEKSDMLTMSTRAIFQKNATHPNWEKFLERFLPDPTLRRFVQKVMGYSLVDGNPEKVMV 617
Query: 505 HIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVII 564
+ G +GK+T++ I A G+ Y A ++ G N ++ + R+V +
Sbjct: 618 FLFGPNHTGKTTILEAIGSALGD-YASPINAVKLLGR---NTGGPNSEVLANVNRRMVFM 673
Query: 565 SETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWW 624
SE + E++A +KQ+TG D R + SFTP++ N ++ D+A
Sbjct: 674 SEIGTDYELSANSLKQVTGNDSQQLRGVHSAEVIAKTPSFTPYVATNSIPGIQGGDEALS 733
Query: 625 RRYIVIPFDK----PIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDI-PEVC 679
R ++IPF+K + ++ F+ + W L+G + Y +GL D PE+
Sbjct: 734 NRLLIIPFNKSNKFSVKKEESIFSPMVY----PAIFWWLLEGFQMYKEEGLSRDEWPEII 789
Query: 680 LKAKEEERQGTDTYQAWIDDCCDIGENLWEES--HSLAKSYSEYREQELNYDRKRISTRT 737
++ + + + + ++ + E S
Sbjct: 790 RDTSQKFSGEISPVHEFASRHLAKVSDKKTIALREEVDMAWKTFAVDEG-IPIHNFSLNE 848
Query: 738 VTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771
LK GF ++ + +G++L
Sbjct: 849 FHKTLKSLGFTSA---RTTVNGTPNRHVYRGVQL 879
>gi|327198749|emb|CCA61450.1| unnamed protein product [Diadromus pulchellus ascovirus 4a]
Length = 849
Score = 241 bits (614), Expect = 5e-61, Method: Composition-based stats.
Identities = 99/574 (17%), Positives = 191/574 (33%), Gaps = 60/574 (10%)
Query: 205 YTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKG---KEIARRWSKQGSTYD 261
++ +I + C E + W+ V M + R + + +S+Q Y+
Sbjct: 259 ISDEKIGNLVMCLKSERAE-DYGNWLKVGMILASLARSRKDAAYFRNLFHIFSRQSPKYN 317
Query: 262 EENFNYKWDTFDFE------EIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAM 315
+ K+D+ IG ++ L L D M
Sbjct: 318 DVECEAKFDSLIKSSHDGGLGIGTLVFMAKEDNAIKDLSDILFNYCLEFIPLHDYDIAKM 377
Query: 316 -------FSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFD 368
I K Y + W + V W + +
Sbjct: 378 VIESVTARYITHKDFGCYAFEGTIWKE-----VTGWDNIFKNHVNEWAFSYIRTVKQKIT 432
Query: 369 LSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRF 428
S++PED + S+ + N+ KS ++ + + ++RF
Sbjct: 433 SSDDPEDPHTKSRMAILTRLEKKVKNYSSMNNIVKSMFDQYFDHKMYLL----FEQNTRF 488
Query: 429 LGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE-----FLDLVSGYFESEEVM 483
+ + + D+E + V + Y++ VE E S + D F +E+
Sbjct: 489 IAFNNCVFDIEEWKLVPANPDHYLSIKIHHDLVEWESSPQAAKQFVEDFFYKIFPDDELR 548
Query: 484 DYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP 543
+Y + G N ++F G G +GKS +NL++ FG + S +M +
Sbjct: 549 EYCLDNFARIITGKNVYKQFQFWTGTGNNGKSVCINLMEAVFGKM-SMKTPKSIVMGGQV 607
Query: 544 PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG--NTYSESP 601
+ G A P RL +R+ II E ND ++ +IK ++G D +R + E
Sbjct: 608 KQGGAA-PETYRLKDARLGIIDEVTNNDYLDPGQIKGLSGNDTFYSRDLFQKCKDIKEIT 666
Query: 602 ASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA-------------------NRDAS 642
F P ++ N+ ++ PDDA W R +I F+ D
Sbjct: 667 PMFFPILITNETPIIKRPDDATWDRIRLIRFESKFKSDVVSFIKNNPGVDHSKVFKADPQ 726
Query: 643 FAQKLETKYTLEAKKWFLKGVKA-YISK-GLDVDIPEVCLKAKEEERQGTDTYQAWIDDC 700
KL+ + + +KA I + +P+ + + G + + ++++
Sbjct: 727 VGDKLKKNAKYFLAFFMSRLLKADTIDEFNSGEVVPDKVNEGLHNFKSGQNIMRRFLEEN 786
Query: 701 CDIGENLWEESHSLAKSYSEYREQELNYDRKRIS 734
+ S + +E + +S
Sbjct: 787 FIVDP----VSQEVYSLNKIMKEYNATRPKVVLS 816
>gi|189043238|ref|YP_001936177.1| gp86 [Mycobacterium phage Adjutor]
gi|188090889|gb|ACD49671.1| gp86 [Mycobacterium phage Adjutor]
Length = 983
Score = 240 bits (612), Expect = 7e-61, Method: Composition-based stats.
Identities = 99/559 (17%), Positives = 178/559 (31%), Gaps = 103/559 (18%)
Query: 308 SDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVF 367
SD N + K + Y W + + ++ + E +
Sbjct: 423 SDQGNGDHWIDLHKDNAFYVPALGQWIMWTGKSWIVGDGCAERSYRRVKARQKRYAEQLM 482
Query: 368 DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSR 427
+ E + + + +R A I L+++
Sbjct: 483 RRAAELKAAQDPTANAAVAMAKSWRSWATRSGDVGPIERALKAASMELGIEEGELNANPA 542
Query: 428 FLGE---------------------------------------QDGI------------L 436
+ ++G
Sbjct: 543 LICCENGVLELDLSPLDSLADDSQSAGRNGDRGRRNGHNGRNGRNGTANVASLVEDDEEF 602
Query: 437 DLE--------TGQKVKPTKELYITKSTGTPFVEGEP-------------SQEFLDLVSG 475
DL+ + + +E +T STGT ++ + + + V
Sbjct: 603 DLDYEAVAPNSHVRLREIRREDLLTLSTGTNYLPWQELVAGEFGKQEALYASTWARAVEM 662
Query: 476 YFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535
Y EEV + + +G +LLG N+ + + + G GSGKST +N A G+ Y +
Sbjct: 663 YLPDEEVRLFLQKLLGYSLLGDNRERIVVFLHGPTGSGKSTFLNATLNALGD-YADVVDL 721
Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595
+R + NP+L + RIV SE ++ + ++A K++TGGD +TA L Y N
Sbjct: 722 GIFKGDR-----QTNPALAYALPKRIVTCSEASQRNVLHADMFKRITGGDPLTAELKYSN 776
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETK-YTLE 654
+ +F P+I N + D A R +V+ F++ I +D L +
Sbjct: 777 ESVKRKPAFVPWIATNTPPSIPGADAAVVDRTVVVGFNEQIRKQDVGMNAMLSSPRAKTA 836
Query: 655 AKKWFLKGVKAYISKGLDV-DIPEVCLKAKEEERQGTDTYQAWIDDC------------- 700
W ++G Y +GL D P E +I +C
Sbjct: 837 VLAWAVEGWGMYRREGLRRADFPAAVKGESIEFTNQFSDVSEFISECVEEAPVSLRRKAE 896
Query: 701 ------CDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
CD E + Y + ++ DR + + LK G+ + E
Sbjct: 897 RRNWRVCDWPEEWHTTVSEVYDVYVTWCQENRVADRNIMKKNGFSRQLKDYGY----RAE 952
Query: 755 KIEKEWKSKRIIKGLKLKP 773
++K+ + R G KL
Sbjct: 953 VVKKDGFTSRTYAGFKLNS 971
>gi|325842743|ref|ZP_08167778.1| phage/plasmid primase, P4 family, C-terminal domain protein
[Turicibacter sp. HGF1]
gi|325489543|gb|EGC91908.1| phage/plasmid primase, P4 family, C-terminal domain protein
[Turicibacter sp. HGF1]
Length = 570
Score = 240 bits (611), Expect = 9e-61, Method: Composition-based stats.
Identities = 65/388 (16%), Positives = 137/388 (35%), Gaps = 28/388 (7%)
Query: 398 ENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTG 457
E S KS + L + + ++ +R+L ++GIL L + K + +
Sbjct: 196 EVSYGKSVLEQLRLDAG---RLEYVEEDTRYLNLKNGILRLSDLKLFKHSPSIITLSQLP 252
Query: 458 TPFVEGEPSQEFLDLVSGYFESE-EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKST 516
+ FL ++ FE + E + G L K Q+F G G +GKS
Sbjct: 253 VGYDLNAKCPNFLKYLNTVFEGDCERISLVQEVFGYCLTTDTKLQKFFIFYGNGSNGKSV 312
Query: 517 LMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEND-EINA 575
L N+++ GN ++ + + + + R+ I E++ + +N
Sbjct: 313 LANIMRKVIGNDNCSSSTLEQLSKQFGGQV---------IQDKRVNISGESDSSRNVLNT 363
Query: 576 AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP 635
++K +TG D + + N P ++ N + + D + RR + IPF+
Sbjct: 364 QQLKLITGEDMVQVESKFKNPIMIRPY-VKLIVLSNHYPKTEDTSDGFLRRCLFIPFNMR 422
Query: 636 IAN-----------RDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKE 684
+D KL+++ W L+G + + + + +
Sbjct: 423 FVEEGTKLKDKEAYKDKDLQSKLDSEL-DGIFMWALQGYQRLKDQNYVLTQCTASDRVLK 481
Query: 685 EERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQ 744
+ + + +I D + E + +Y + ++ IS +
Sbjct: 482 DFMIYNNPVKEFIMDFLVVCPGNRELKTDIYDAYQGWCKRNNVRSGLNISAKEFWGEFA- 540
Query: 745 KGFIGGIKREKIEKEWKSKRIIKGLKLK 772
+ + +++ R I LK+K
Sbjct: 541 RSITVFTNYQYQQQKSNGDRYICNLKIK 568
>gi|124486496|ref|YP_001031112.1| hypothetical protein Mlab_1684 [Methanocorpusculum labreanum Z]
gi|124364037|gb|ABN07845.1| phage/plasmid primase, P4 family [Methanocorpusculum labreanum Z]
Length = 606
Score = 240 bits (611), Expect = 9e-61, Method: Composition-based stats.
Identities = 103/520 (19%), Positives = 194/520 (37%), Gaps = 57/520 (10%)
Query: 294 HGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITA 353
G+L L + +D N F G+ +Y + W+ N+ W +K+
Sbjct: 103 RGQLPTPDALLNSLNDEGNAVRFEKEAGGNLVYDIASGQWFAFITNH---WEPAREKL-G 158
Query: 354 SIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGS 413
++ + E D + +N+ R N+ +N + + + GS
Sbjct: 159 KVLRLVGKSLEQELDYWKR-RAAAENTPEMRNLVVQLQNHVNLSKNHTKQVALRKMIEGS 217
Query: 414 IFSITSDLLDSSSRFLGEQDGILDLETGQKVK-----PTKELYITKSTGTPFVEGEPSQE 468
+ S R++ ++G LD TG+ + +E Y + G S
Sbjct: 218 SMQVNLSEA-SDGRYITCKNGALDCRTGEFIPIWACDSIREKYPLIYLDAVYTPGLRSPA 276
Query: 469 FLDLVSGYFESE--------------EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGK 514
F+D + F+ E+ F R +G L GN Q I + G G +GK
Sbjct: 277 FIDHLKKVFDDNVSGLSEEERTLQMMELGRCFLRLLGYLLFPGNPEQVIIFLWGKGSNGK 336
Query: 515 STLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISET----NEN 570
ST +++++ FG++ + + + + + R + R+++ISE +
Sbjct: 337 STTIDVLREIFGSE----MSEASVRELYAGSEDRPASGVARSLSKRVMLISEASDEESRG 392
Query: 571 DEINAAKIKQMTGGDCMTARLNYGNTYSESPASF---TPFIVPNKHLFV-RNPDDAWWRR 626
I+A +K +TG D +T+R + + Y +S TP V N+ + D A RR
Sbjct: 393 GRISADTVKALTG-DAVTSR--FRDMYEKSRPQRVVCTPVGVTNELPRFDKTLDYALLRR 449
Query: 627 YIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKE 684
IPF A R + L + + AY +GL + P C +
Sbjct: 450 IFTIPFPHLFAGDERARDIRECLLAER-DAVFSMVADELIAYTKEGL-LPQPAFCASTQN 507
Query: 685 EERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYRE-----------QELNYDRK-R 732
E G + A+I++C + E L ++Y + Q YD +
Sbjct: 508 ELLAGFE-VSAFIEECVEKSETGRVSRLELEEAYISWCARHDIPVGLAKIQMPGYDEYSQ 566
Query: 733 ISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLK 772
++ R +++G G++ E++ + + +LK
Sbjct: 567 VNFRQGLSEKEKRGLFKGMRVYGFEEQRTNSQRYFKCRLK 606
>gi|206600076|ref|YP_002242151.1| gp94 [Mycobacterium phage Konstantine]
gi|206287164|gb|ACI12509.1| gp94 [Mycobacterium phage Konstantine]
Length = 995
Score = 238 bits (607), Expect = 3e-60, Method: Composition-based stats.
Identities = 107/542 (19%), Positives = 207/542 (38%), Gaps = 71/542 (13%)
Query: 280 TAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKK--- 336
+ S Y A F D +F+ G + D W
Sbjct: 457 YVQFGSPDAPDNYRMN----DDGNAQHFVD-----LFTSPGIGPGIRWIDGYGWIVWSAG 507
Query: 337 --DKNNVYIWSLTLDKITASIMN--------FLVSMKEDVFDLSEEPEDNN---KNSKSP 383
D++ W L+ D + F+V ++ DV + ++ N S P
Sbjct: 508 STDRSVQPRWILSTDGLIRRAWQRVRDRQEAFVVFLEADVQNQIQQFTQQNPNVGASAFP 567
Query: 384 RFWFNTDYRRQNVEENSKAKSTAQSLEAG-------SIFSITSDLLDSSSRFLGEQDGIL 436
R ++ +E +KA ++ A ++ + LD+ R +G +G++
Sbjct: 568 AALKALQARLRSWKEFAKASGNNRNAMAALDAAKALPGVTVDINDLDNDGRLIGVANGVI 627
Query: 437 DL-ETG-QKVKPTKELYITKSTGTPFVEGEPS--------QEFLDLVSGYFESEEVMDYF 486
+L G + + +IT +T TP++E + Q++ + + + E++
Sbjct: 628 ELGVDGVRLRDAEAQDFITLNTKTPYLEPDQMSGTQKIGMQKWEEYLERFLPDEDIRRTA 687
Query: 487 TRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEA 546
+G L+GGN + FI ++G +GKST+ NL A G+ Y + A + +
Sbjct: 688 QVALGHCLIGGNPEKIFIVLKGDSNTGKSTMANLCAAALGD-YAMTASLTI------YQN 740
Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGG-DCMTARLNYGNTYSESPASFT 605
K NP L + + R+V+ +E +E D+I+A+ +K++TGG D ++A L N E F
Sbjct: 741 HKLNPLLAKALTRRMVVTTELSETDKISASMLKRITGGSDLISAELKGSNVLVERVPQFV 800
Query: 606 PFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAKKWFLKGV 663
P + N + D A R VIPF+ ++ + D A ++ W ++G
Sbjct: 801 PIVATNSVPSIEGADKALRNRLYVIPFNVVVSEQEDDKEAATVMKAVGLPAVLHWLVEGY 860
Query: 664 KAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESH----------- 712
K Y + P + + + DT ++ C + +
Sbjct: 861 KIYRRERGLPKDPRIVQE-SDAFASELDTVSTFLSQCVKKHPTNFGDPKIPWQDHPGWVI 919
Query: 713 ---SLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGL 769
L ++Y + + + R+S + + G ++++ K + G+
Sbjct: 920 LPDDLYEAYWNWCNRMKVREPDRLSQPKFSRRVAAMG----HNKKQLRGPKKPTQHWYGI 975
Query: 770 KL 771
KL
Sbjct: 976 KL 977
>gi|169342282|ref|ZP_02863361.1| D5 N like family [Clostridium perfringens C str. JGS1495]
gi|169299663|gb|EDS81721.1| D5 N like family [Clostridium perfringens C str. JGS1495]
Length = 463
Score = 238 bits (607), Expect = 3e-60, Method: Composition-based stats.
Identities = 65/389 (16%), Positives = 138/389 (35%), Gaps = 18/389 (4%)
Query: 401 KAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPF 460
K+ + + A + L+S+ R++ ++G+ DL T ++ E Y + +
Sbjct: 82 SLKNEKEYIGALKRIVFFEEELNSNKRYINLRNGMFDLNTYSLMEHRPEFYSSIRIPVDY 141
Query: 461 VEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMN 519
E F+ ++ F EE ++ VG L +AQ+ + + G+G +GK ++
Sbjct: 142 NEEAECPNFIRFLNQCFNGDEEAINLAQEWVGYILTAETRAQKALILYGLGKNGKGIFID 201
Query: 520 LIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN-ENDEINAAKI 578
+I G + + + +++ S + + G I +E +N
Sbjct: 202 IISELIGQENISSIPMNEL---------SRPFSRVCIYGKLANISNENEFNGASLNTQYF 252
Query: 579 KQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN 638
K + G D +TA P + N + A+ RR ++ F +
Sbjct: 253 KAIVGEDIITAEQKNQPVIQFKP-TARMVFSTNNLPHTNDGGYAFMRRLCMLHFKNVVKE 311
Query: 639 RDAS--FAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAW 696
D +KL+ + W L G++ K ++ + +
Sbjct: 312 EDRDFYLREKLKEELN-GIFNWALVGLRRLKENNFRFSECNSSNKLLKQYEMELNPMILF 370
Query: 697 IDDCCDI-GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755
+ C + + E++ + +Y + + +IS + + + E
Sbjct: 371 FEQCVEKEHSDHREDNRIIYNTYKSWARANGMEGQAKISVQKFWRKFD--AYAKSLGYEC 428
Query: 756 IEKEWKSKRIIKGLKLKPAFESVDDNSNI 784
K+ S R G+K+ F D+S I
Sbjct: 429 ESKKSNSFRYHTGVKIVGCFRISLDDSRI 457
>gi|169346926|ref|ZP_02865874.1| putative phage [Clostridium perfringens C str. JGS1495]
gi|169296985|gb|EDS79109.1| putative phage [Clostridium perfringens C str. JGS1495]
Length = 927
Score = 237 bits (605), Expect = 5e-60, Method: Composition-based stats.
Identities = 71/437 (16%), Positives = 152/437 (34%), Gaps = 25/437 (5%)
Query: 333 WYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYR 392
WY++ + + L K + + E + + ++ R DY
Sbjct: 504 WYEEQEKGLKFLPFVLAKHLSETRDVY-YGGESFLIYENGVYNISGEKEAGRII--MDYM 560
Query: 393 RQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYI 452
N + + + + + S D + + + ++G+LD+ + T
Sbjct: 561 LPNYCIMASIRDCREQWDI--LVSKDFDDFNRNPYLVNVRNGLLDIRDMSFKEHTPSYLS 618
Query: 453 TKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGS 512
T + +F ++ + + ++ VG L +Q+ G +
Sbjct: 619 TVQLNVEYNPQVDCPQFKKFLNEVLDCK-LIPLVQEIVGYLLTTNTASQKAFVFWGPART 677
Query: 513 GKSTLMNLIKYAF-GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEND 571
GKSTL+ +++Y G + V N +I L+G + S+
Sbjct: 678 GKSTLLWVVEYLLLGKKNVSNIPWQEIGDKFKT---------AELLGKLANVFSDLPSKS 728
Query: 572 EINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLF-VRNPDDAWWRRYIVI 630
+ K +TG D + A N + P + N+ + + ++RR I++
Sbjct: 729 IDDTGIFKVVTGEDYLMAEKKNKNPFKFKPFA-RLVFSCNELPRNYVDRTEGFYRRLIIV 787
Query: 631 PFDKPIANR--DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQ 688
PF + I D + K + + W L+G+K + E+ K+E ++
Sbjct: 788 PFSRQIEKSKIDKALKYKFQRE-KEGILNWALEGLKRLYENNFEFSENELTDGVKKEYKR 846
Query: 689 GTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFI 748
+ +++++CC+I + ++Y E+ + K +S L+ F
Sbjct: 847 ENNNVISFVEECCEIDSLFSCSRIEIYEAYKEFCVEAG---LKALSQIKFNKELEGN-FN 902
Query: 749 GGIKREKIEKEWKSKRI 765
R + W RI
Sbjct: 903 ITRSRSGKLRLWNGVRI 919
>gi|124516082|gb|EAY57591.1| Phage/plasmid primase P4 [Leptospirillum rubarum]
Length = 730
Score = 236 bits (603), Expect = 9e-60, Method: Composition-based stats.
Identities = 67/360 (18%), Positives = 137/360 (38%), Gaps = 31/360 (8%)
Query: 421 LLDS-SSRFLGEQDGILDLETG--QKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF 477
D R +G +G+L G +E Y + F +S F
Sbjct: 390 QFDQIDKRSIGAANGVLRYIDGGWSLTPYRREDYRRIRLPVTYDAEAKCPRFEQFLSEVF 449
Query: 478 ES----EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
+ +E +G++L + ++ + + G GG+GKS L+ +++ G + +
Sbjct: 450 DGSPDKKERALSVIEFLGLSLTATTEYEKALLLVGKGGNGKSVLLRVLESLIGARNRSSV 509
Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593
+ + + L G + I+SE +E E+ A+IK + G+ +TA
Sbjct: 510 QLKQL---------ENRFQRAHLDGKLVNIMSELSEGGEVPDAEIKSIISGEPITAEHKL 560
Query: 594 GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN---RDASFAQKLETK 650
+ P +I N VR+ D +RR+I++ F + RD ++KL +
Sbjct: 561 KPPFEFFPVC-KLWIATNHMPSVRDLSDGLFRRFIILNFPNRFDDKPSRDTKLSEKLAAE 619
Query: 651 YTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEE 710
+ + LK + +G + P L+A + ++ +D +++D +
Sbjct: 620 AS-GILNYCLKALAGVYERG-ALTEPTSSLEAVQGWKRDSDQTSQFLEDEMILEPGASIS 677
Query: 711 SHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLK 770
S Y E+ ++ ++ + ++ T L G K R++ GL+
Sbjct: 678 SSEAYHRYVEWAKEVG--IKRTLGRKSFTERLMNHGVEPA-------KGTGGVRLLWGLR 728
>gi|297172230|gb|ADI23209.1| predicted ATPase [uncultured Gemmatimonadales bacterium
HF0770_11C06]
Length = 352
Score = 236 bits (602), Expect = 1e-59, Method: Composition-based stats.
Identities = 67/356 (18%), Positives = 132/356 (37%), Gaps = 26/356 (7%)
Query: 424 SSSRFLGEQDGILDLE---TGQ---KVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF 477
+ +L ++G+LD+ TG T E + F ++ + F
Sbjct: 12 ADREYLAVKNGLLDVRAWLTGDSPVLGPHTPEWFTPVCLPYEFDPTATCPKWEGFIQWMF 71
Query: 478 E-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEAS 536
+ + ++ G L+ + Q F+ + G G +GKS L+ +K+ G++ +
Sbjct: 72 QHDDALIRLVQEWFGYCLVLDHSQQVFVIVVGDGANGKSVLLQTLKHLVGHKNCSSVALE 131
Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNT 596
+ L +G + I+SE + ++ K+K GD MT +
Sbjct: 132 NFDG---------RFDLAMTIGKLVNIVSEIGDVAKLPEGKLKAFVSGDLMTFDRKHREP 182
Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDAS--FAQKLETKYTLE 654
+P + NK + D WRR+I +P D +A RD QKL+T+
Sbjct: 183 LQVNP-TARLVFATNKLPTFADRSDGLWRRFIPLPCDATVAPRDQDRALPQKLQTEL-PG 240
Query: 655 AKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
W G++ +G ++PE + E R + + D C + L
Sbjct: 241 ILNWAAAGLRRLRKRGY-FEVPEASRRLLAEHRGASQPELIFFADHCKAQADAEMACAIL 299
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLK 770
+Y + E + + + + L L+++ ++R + + K G+
Sbjct: 300 YGTYQRWCE---DGAHRAMDPQQFGLALRKR--FVRVERARRRRGGKQLWFYVGVA 350
>gi|168211076|ref|ZP_02636701.1| phage/plasmid primase domain, P4 family [Clostridium perfringens B
str. ATCC 3626]
gi|170710872|gb|EDT23054.1| phage/plasmid primase domain, P4 family [Clostridium perfringens B
str. ATCC 3626]
Length = 995
Score = 236 bits (601), Expect = 1e-59, Method: Composition-based stats.
Identities = 71/437 (16%), Positives = 151/437 (34%), Gaps = 25/437 (5%)
Query: 333 WYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYR 392
WY++ + + L K + + E + + ++ R DY
Sbjct: 572 WYEEQEKGLKFLPFVLAKHLSETRDVY-YGGESFLIYENGVYNISGEKEAGRII--MDYM 628
Query: 393 RQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYI 452
N + + + + S D + + + ++G+LD+ + T
Sbjct: 629 LPNYCIMASIRDCRDQWDI--LVSKDFDDFNRNPYLVNVRNGLLDIRDMSFKEHTPSYLS 686
Query: 453 TKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGS 512
T + +F ++ + + ++ VG L +Q+ G +
Sbjct: 687 TVQLNVEYNPQVDCPQFKKFLNEVLDCK-LIPLVQEIVGYLLTTNTASQKAFVFWGPART 745
Query: 513 GKSTLMNLIKYAF-GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEND 571
GKSTL+ +++Y G + V N +I L+G + S+
Sbjct: 746 GKSTLLWVVEYLLLGKKNVSNIPWQEIGDKFKT---------AELLGKLANVFSDLPSKS 796
Query: 572 EINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLF-VRNPDDAWWRRYIVI 630
+ K +TG D + A N + P + N+ + + ++RR I++
Sbjct: 797 IDDTGIFKVVTGEDYLMAEKKNKNPFKFKPFA-RLVFSCNELPRNYVDRTEGFYRRLIIV 855
Query: 631 PFDKPIANR--DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQ 688
PF + I D + K + + W L+G+K + E+ K+E ++
Sbjct: 856 PFSRQIEKSKIDKALKYKFQRE-KEGILNWALEGLKRLYENNFEFSENELTDGVKKEYKR 914
Query: 689 GTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFI 748
+ +++++CC+I + ++Y E+ + K +S L+ F
Sbjct: 915 ENNNVISFVEECCEIDGLFSCSRIEIYEAYKEFCVEAG---LKALSQIKFNKELEGN-FN 970
Query: 749 GGIKREKIEKEWKSKRI 765
R + W RI
Sbjct: 971 ITRSRSGKLRSWNGVRI 987
>gi|255018276|ref|ZP_05290402.1| phage/plasmid primase, P4 family protein [Listeria monocytogenes
FSL F2-515]
Length = 284
Score = 235 bits (600), Expect = 2e-59, Method: Composition-based stats.
Identities = 60/278 (21%), Positives = 107/278 (38%), Gaps = 18/278 (6%)
Query: 304 ASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMK 363
A F D N F Y+ K WY N IW ++ + ++
Sbjct: 14 AYSFDDTGNAERFRDEYNNSVRYSYVNKGWYYY---NSKIWMFDNTGAIKTLADRVIQNM 70
Query: 364 EDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLD 423
+ F E D K + + T EA + + + D
Sbjct: 71 KKDFAYMESESDIEK-----------AFVKHLKATRGNRGKTNMLKEAEHLMPVLPEQFD 119
Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE-SEEV 482
+ F Q+G +DL++G+ + + TK + + + + + + F+ +E+
Sbjct: 120 VNKHFFNTQNGYIDLKSGRLNEHDRSKMFTKISHIEYTDKIDAPLWNSFLLDIFDHDKEL 179
Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542
+DY + VG +L G Q + G G +GKS +++I FG+ Y N + IM +
Sbjct: 180 IDYVQKAVGYSLTGSTSEQVMFILFGNGRNGKSVFLDIINDVFGS-YSTNIQPQTIMVKQ 238
Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQ 580
++ AN + RL +R V +E NE ++ IK
Sbjct: 239 --QSSGANSDIARLHAARFVTTTEPNEGVRLDEGXIKH 274
>gi|205374882|ref|ZP_03227674.1| primase, putative [Bacillus coahuilensis m4-4]
Length = 538
Score = 235 bits (598), Expect = 3e-59, Method: Composition-based stats.
Identities = 69/380 (18%), Positives = 137/380 (36%), Gaps = 23/380 (6%)
Query: 399 NSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVK----PTKELYITK 454
+ A + + ++S++ + ++G+LD+ + K E T
Sbjct: 166 MNTVSDVASQWKIDYRINKHPQEINSNNNMINLKNGLLDISDNENWKFIKGHNPEHLSTI 225
Query: 455 STGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGG-NKAQRFIHIRGVGGSG 513
+ +EF + ++V VG L Q + G G SG
Sbjct: 226 QIQANYNPEAKGKEFHKFLDSSVPDKQVQVLLQEMVGYCLTPFVTSKQMIFILTGQGDSG 285
Query: 514 KSTLMN-LIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDE 572
KST +N ++ G+ + D+ N + L G + I ++ +
Sbjct: 286 KSTFLNATLEALVGDNAKSHVALQDLDGNEYNQ--------AELFGKIVNIFADLPDKPL 337
Query: 573 INAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHL--FVRNPDDAWWRRYIVI 630
+ +K TG D +TAR + N F ++ DA++ R +I
Sbjct: 338 KDIGYLKAATGKDWITARRIRQAPFQFK-NKAKFVYSANDLPSNFSKDSTDAFYNRLTLI 396
Query: 631 PFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGT 690
PF++ I +D QKLE + W L+G++ IS G + + K E ++ +
Sbjct: 397 PFNQKITKKDPYLEQKLEKEIDY-IAYWALQGLQRLISNGFKFSENQKSNELKAEYKKNS 455
Query: 691 DTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGG 750
+ ++++ C++ SL ++ + EQ + S NL G
Sbjct: 456 NPVMVFVEEYCELSSENETPRVSLWTAWQNFCEQNGHVAG---SQIKFNKNLT--ALYGE 510
Query: 751 IKREKIEKEWKSKRIIKGLK 770
++ + + KG++
Sbjct: 511 QIQQSQMNNSRRTKSWKGIR 530
>gi|158522921|ref|YP_001530791.1| P4 family phage/plasmid primase [Desulfococcus oleovorans Hxd3]
gi|158511747|gb|ABW68714.1| phage/plasmid primase, P4 family [Desulfococcus oleovorans Hxd3]
Length = 769
Score = 234 bits (597), Expect = 4e-59, Method: Composition-based stats.
Identities = 66/385 (17%), Positives = 126/385 (32%), Gaps = 26/385 (6%)
Query: 392 RRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELY 451
R++ + S +++ D L Q+G+ DL+ G V + + +
Sbjct: 405 RKRKLFTTKDLSSFEHHCIGDPQCILSNANQDQVKY-LTLQNGLFDLDQGVLVHHSPDTF 463
Query: 452 ITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVG 510
T + E +L + F ++ + + +G L ++G G
Sbjct: 464 TTNLLPYDYDELAQCPLWLKYLDDVFMGDQDKIMFAQEAIGYVFLKQIPTPALFFLKGTG 523
Query: 511 GSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN 570
+GKS +N I FG + V + + L G I E N
Sbjct: 524 SNGKSVFINTITNLFGEENVASISLGSFSKEYYTLG---------LFGKMANISGEAP-N 573
Query: 571 DEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVI 630
++ +K + GD + R Y P + FI N+ + WWRR V+
Sbjct: 574 KFLSTDVVKAIVSGDWVQGRDPYKRPTKFRPYA-KHFIAMNEEPATDDNSYGWWRRIYVL 632
Query: 631 PFDKPIANR--DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQ 688
F++ D KL+ + + W + G G + E +AK +
Sbjct: 633 KFERTFHKHEMDVFLTDKLKNELS-GIFNWAIAGYHRLKENGYILHTGESLEQAKYNYQC 691
Query: 689 GTDTYQAWIDDCCDIGE--NLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746
+ ++I C + + + L Y Y E +S + L+ G
Sbjct: 692 QNNNVISFIKKKCAKAQATDNYILFKDLYHLYCAYCESNGA---DVLSKKDFRKTLENSG 748
Query: 747 FIGGIKREKIEKEWKSKRIIKGLKL 771
+ + + + + G+ L
Sbjct: 749 Y-----KVDNNTKASNSLCVYGIAL 768
>gi|206601900|gb|EDZ38382.1| DNA primase [Leptospirillum sp. Group II '5-way CG']
Length = 717
Score = 233 bits (595), Expect = 7e-59, Method: Composition-based stats.
Identities = 62/360 (17%), Positives = 137/360 (38%), Gaps = 31/360 (8%)
Query: 421 LLDS-SSRFLGEQDGILDLETG--QKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF 477
D R +G +G+L G +E Y + F +S F
Sbjct: 377 QFDQIDKRSIGAANGVLRYIDGGWSLTPYRREDYRRIRLPVTYDPKAKCPRFEQFLSEVF 436
Query: 478 ES-EEVMDY---FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
+ + + +G+++ + ++ + + G GG+GKS L+ +++ G + +
Sbjct: 437 DGTPDKRERGLTVLEFLGLSMTATTEYEKALLLVGKGGNGKSVLLRVLESLIGGKNRSSV 496
Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593
+ + + L G + I+SE +E E+ A+IK + G+ +TA
Sbjct: 497 QLKQL---------ENRFQRAHLDGKLVNIMSELSEGGEVPDAEIKAIISGEPITAEHKQ 547
Query: 594 GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN---RDASFAQKLETK 650
+ + P +I N VR+ D +RR++++ F + RD ++KL +
Sbjct: 548 KHPFEFFPVC-KLWIATNHMPSVRDLSDGLFRRFVILNFPNRFDDKPSRDTKLSEKLAAE 606
Query: 651 YTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEE 710
+ + LK + + + P L+A + ++ +D +++D +
Sbjct: 607 AS-GILNYCLKALSGVYER-ESLTEPTSSLEAVQGWKRDSDQTSQFLEDEMILEPGASIA 664
Query: 711 SHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLK 770
S Y ++ ++ ++ + ++ T L G K R++ GL+
Sbjct: 665 SSEAYHLYVDWAKEVG--IKRTLGRKSFTERLVNHGVEPA-------KGPGGVRLLWGLR 715
>gi|218900594|ref|YP_002449005.1| phage/plasmid primase, P4 family, putative [Bacillus cereus G9842]
gi|218542423|gb|ACK94817.1| phage/plasmid primase, P4 family, putative [Bacillus cereus G9842]
Length = 531
Score = 231 bits (590), Expect = 2e-58, Method: Composition-based stats.
Identities = 73/509 (14%), Positives = 158/509 (31%), Gaps = 53/509 (10%)
Query: 271 TFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLL--ASRFSDAYNKAMFSIYKKGHFLYTA 328
+ D K ++ K I G + + +N +F+ Y
Sbjct: 69 SLIQTINSDHVKFLTSELHHAVQVSKAIQTGFIYEEKKIKYRFNSNLFADYFLTRVKMVC 128
Query: 329 DTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFN 388
D + ++ L D ++ L++ + +
Sbjct: 129 DENG-LLYAYSKQGVFKLLTDTEMGRLVRILMN-------------------EGLEHSWR 168
Query: 389 TDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTK 448
+ + ++ ++ + + LD ++ Q+G+ L+ G K
Sbjct: 169 SSHEKEAIQAIKRE-------------CFSKSQLDCMREYVNLQNGMYSLKAGSLEKHHP 215
Query: 449 ELYITKSTGTPFVEGEPSQEFLDLVSGY-FESEEVMDYFTRCVGMALLGGNKAQRFIHIR 507
T + F + +E+ + +G L + ++ +
Sbjct: 216 NFLSTVQIPIKYDGEADCPTFKQFIKDITCNDKELENVIQELMGYLLSPEIRCEKAFYFF 275
Query: 508 GVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISET 567
G G +GKS L +I G Q V + S + E ++G + I E
Sbjct: 276 GRGANGKSVLARIIAILVGEQNVSSIPLSHFSSDFGLEG---------IIGKTVNIAPEN 326
Query: 568 N-ENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRR 626
++N K + GD M L Y + + + + N+ + + ++RR
Sbjct: 327 EMRGSQLNTEAFKAIVSGDGMNINLKYRPSITNYKSKCRLVFLGNELPDTNDLTNGYFRR 386
Query: 627 YIVIPFDKPIAN--RDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKE 684
+IPF + + ++ +L T+ W ++G+K V +
Sbjct: 387 MCIIPFKRTFSESEQNRDLLMEL-TEELPGIFNWAIEGLKRLRENNYVFSCSSVIKEELR 445
Query: 685 EERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQ 744
+ R + + + + + L + + EQ DR R R +L
Sbjct: 446 KYRLSQNPVLNFFESIVVYDASSKLKRSELYNHFKLWCEQN-EIDRIRTRQR-FYKDLMN 503
Query: 745 KGFIGGIKREKIEKEWKSKRIIKGLKLKP 773
I + +EK + +G+KL+
Sbjct: 504 --VIDSKELSIVEKRIQGHEYFEGIKLES 530
>gi|313895604|ref|ZP_07829160.1| phage/plasmid primase, P4 family, C-terminal domain protein
[Selenomonas sp. oral taxon 137 str. F0430]
gi|312975730|gb|EFR41189.1| phage/plasmid primase, P4 family, C-terminal domain protein
[Selenomonas sp. oral taxon 137 str. F0430]
Length = 830
Score = 231 bits (590), Expect = 3e-58, Method: Composition-based stats.
Identities = 76/457 (16%), Positives = 156/457 (34%), Gaps = 41/457 (8%)
Query: 326 YTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKE----DVFDLSEEPEDNNKNSK 381
+ D WY+ K+ + L K A + ++ E PE +
Sbjct: 399 FVPD---WYEPTKSGLRFLPGVLAKEMAGAQQVFYAAEQHFCYRAGVYHEMPEMEAQRMV 455
Query: 382 SPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETG 441
+ R V+ + + Q L+++S + ++G+ ++
Sbjct: 456 QEKLLLRESRMRHIVDAEKQWRLLVQR---------DVRELNANSFIINVKNGLYNVLED 506
Query: 442 QKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEV-MDYFTRCVGMALLGGNKA 500
T + T + +G F ++ + + +G L+ N A
Sbjct: 507 TLSVHTPDYCSTVQLNVAYDKGADCPRFKQFLAESMGGDMAQVALLQEMLGYFLIPVNSA 566
Query: 501 QRFIHIRGVGGSGKSTLMNLIKYAF-GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGS 559
Q+ I GV +GKS L+ ++ G Q V N +A L G
Sbjct: 567 QKCFVIVGVASAGKSVLLRVLNDVLLGKQNVSNVS---------WQALNERFKTAELFGK 617
Query: 560 RIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLF-VRN 618
I ++ + + K + G D +T N +S ++ N +
Sbjct: 618 LANIFADLPTKNIDDNGIFKALVGEDYLTVEKKNKNPFSFQ-STARLLFSCNSIPKNYGD 676
Query: 619 PDDAWWRRYIVIPFDK--PIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIP 676
+ ++RR I++ F+ P RD +K + + L+G++ +
Sbjct: 677 KSEGFYRRLIIVRFNHSVPKEKRDPELLEKFRAEA-DGIFLFALQGLRRLMGNHYVFSET 735
Query: 677 EVCLKAKEEERQGTDTYQAWIDDCCDI--GENLWEESHSLAKSYSEYREQELNYDRKRIS 734
E ++ R+ +D+ +++ + C + + S L +Y Y E+ K S
Sbjct: 736 EKNRTELQQYREESDSVLSFVKEHCIVLSEGDGCVGSTELWSAYKGYCEECG---LKPYS 792
Query: 735 TRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771
+T + K ++I K +R++ G+KL
Sbjct: 793 QKTFVQQIMTAFPHLERKIDRIAK----RRVLVGIKL 825
>gi|126727691|ref|ZP_01743523.1| hypothetical protein RB2150_15970 [Rhodobacterales bacterium
HTCC2150]
gi|126703107|gb|EBA02208.1| hypothetical protein RB2150_15970 [Rhodobacterales bacterium
HTCC2150]
Length = 598
Score = 231 bits (588), Expect = 5e-58, Method: Composition-based stats.
Identities = 68/356 (19%), Positives = 129/356 (36%), Gaps = 31/356 (8%)
Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEE--- 481
+ +G +L +E Y T + + F + F +E
Sbjct: 266 DPETVNCLNG--ELTLDGLRPHCREHYRTTQIPVEYDPEAKAPMFEAFLDQVFREDEDRA 323
Query: 482 -VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540
+ +G +L+ + + F+ + G G +GKS L+ +++ G V + S+
Sbjct: 324 DKIRTVLELMGYSLMSHARHELFLMLIGPGANGKSVLLGVLEGLLGAANVAGVQPSNF-- 381
Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600
L I++E + + I A++K +T G+ T + N +
Sbjct: 382 -------DNRFQRAHLHQKLANIVTELRQGEVIADAELKAITSGEPATVEHKFQNPFVMR 434
Query: 601 PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKW 658
P + T + N R+ DA +RR ++ F++ A +D KL +
Sbjct: 435 PFA-TCWFGTNHMPHTRDFSDALFRRATILKFNRTFAEHEQDPMLKIKLLNEL-PGILNL 492
Query: 659 FLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSY 718
L G P+ ++AK+E + D ++DD CD N L K Y
Sbjct: 493 ALDAYIVTTFAG--FTAPQSSIEAKQEWKLEADQVAQFVDDACDADPNGEVPIGHLYKFY 550
Query: 719 SEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPA 774
++ + + ++ + + L GF G + R + GL+LKP
Sbjct: 551 GQWADDVG--ISRTVTMKILRDRLTTLGFGG--------RRTGKARFVTGLRLKPG 596
>gi|227544673|ref|ZP_03974722.1| possible ATPase [Lactobacillus reuteri CF48-3A]
gi|227185349|gb|EEI65420.1| possible ATPase [Lactobacillus reuteri CF48-3A]
Length = 207
Score = 230 bits (587), Expect = 6e-58, Method: Composition-based stats.
Identities = 58/215 (26%), Positives = 94/215 (43%), Gaps = 14/215 (6%)
Query: 565 SETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWW 624
+E E +N + +KQ+ D + A Y +S +P S T + N V D+ W
Sbjct: 2 AELEEGKRLNTSIVKQLCSTDEIYAEKKYMKPFSFTP-SHTIVLYTNYLPHVGGNDEGIW 60
Query: 625 RRYIVIPFDKPIANRD--ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKA 682
RR IVIPF IA R+ ++AQ+L K +W ++G + I + + P KA
Sbjct: 61 RRLIVIPFKAKIAKRNDIKNYAQRLTEKAGPAVLQWIIEGAQRTIQQNYRLTTPAAVEKA 120
Query: 683 KEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNL 742
D ++++ C++ + ++S L + Y EY + Y R ST L
Sbjct: 121 VNAYHADNDWLGHFLNENCELDPSYEQKSGDLYQKYREYCQGIGEYIR---STTDFYTAL 177
Query: 743 KQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFES 777
K GF + ++ R IKGL+LK +
Sbjct: 178 KNAGFQ--------RQHKQNGRFIKGLRLKVEADE 204
>gi|299531535|ref|ZP_07044941.1| Phage/plasmid primase P4 [Comamonas testosteroni S44]
gi|298720498|gb|EFI61449.1| Phage/plasmid primase P4 [Comamonas testosteroni S44]
Length = 420
Score = 230 bits (587), Expect = 6e-58, Method: Composition-based stats.
Identities = 74/389 (19%), Positives = 145/389 (37%), Gaps = 30/389 (7%)
Query: 362 MKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDL 421
+ +D + ++ R+ + ++ N S AKST Q+ + + S
Sbjct: 29 LYRWTGTHWSMVDDESGVKQAMRWIADGNHGIVNP---SNAKSTHQTA----LLWLPSLK 81
Query: 422 LDSSSRFLGEQDGILDLE-TGQKVKPTKELYITKSTGTPFVEGEPSQ-EFLDLVSGYFES 479
S + ++G L L+ T + K+L I F + EF L+
Sbjct: 82 ETHSRAIIPVKNGYLHLDGTPSLLPHDKKLGIRHVLDCNFDPAAATPTEFFKLLERILPD 141
Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539
EV D G LL + Q G G +GK TL N+++ N+ + D
Sbjct: 142 AEVRDRVQEYCGYTLLPDARFQCAQLWVGSGANGKGTLANILQALHTNKAAASPNKLDGF 201
Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599
++G+ ++ E ND +K M G+ + Y +
Sbjct: 202 HA------------ATVLGASLLYCDEAPPND-WCEQTLKSMVAGESVAIDRKYLPPIT- 247
Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKK 657
+ + I+ N +++ + +WRR+ V+PF I RD A+++
Sbjct: 248 ARVTGKWLILANHIPAIKDQSNGFWRRFGVVPFPVSIPAAERDPLLAERIIKHELSAVLN 307
Query: 658 WFLKGVKAYISKG-LDVDIPEVCLKAKEEERQGTDTYQAWIDD-CCDIGENLWEESHSLA 715
W ++G++ + +G D ++P A + + T++ +WI D ++ +L +
Sbjct: 308 WAVEGLQRLLLRGRFDPNMPRAMQNAIQSAKVETNSVHSWISDAAIELMTDLSTAKAEVY 367
Query: 716 KSYSEYREQELNYDRKRISTRTVTLNLKQ 744
YS + +Q +S L++
Sbjct: 368 AVYSAWCKQNGML---AVSAPKFWKRLQE 393
>gi|242279615|ref|YP_002991744.1| P4 family phage/plasmid primase [Desulfovibrio salexigens DSM 2638]
gi|242122509|gb|ACS80205.1| phage/plasmid primase, P4 family [Desulfovibrio salexigens DSM
2638]
Length = 788
Score = 230 bits (587), Expect = 7e-58, Method: Composition-based stats.
Identities = 69/411 (16%), Positives = 142/411 (34%), Gaps = 32/411 (7%)
Query: 379 NSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLL-------DSSSRFLGE 431
N+K ++ +TA+ +A S +I L D
Sbjct: 396 NAKYWEQISRGTLQQSATHYLGIEATTARVNDATS-LAINLSNLPHGRAVNDRDEWV-CL 453
Query: 432 QDGILDLETGQKVKPTKELYITKSTGTPFVEG--EPSQEFLDLVSGYFESEEVMDYFTRC 489
Q+G+L+L+T + + + T F + + + ++ E +
Sbjct: 454 QNGMLNLKTLELKPHEHDYFSTICLNVSFDPDSEARCERWEKFLQQTVQTPEPIAQLQEF 513
Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549
G+ L + ++ + + G G GKSTL+ +++ D+
Sbjct: 514 AGLCLTRDTRFEKCLLLLGPGSDGKSTLLKVLRELVCAANCSAVAFQDLEDQFRR----- 568
Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609
L + I +E + K + GD + + +++ +P
Sbjct: 569 ----ASLYNKLLNISTEIGSAA-METPIFKAVVSGDAIQGAFKHKDSFEFTPFC-KLAFA 622
Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDKPI----ANRDASFAQKLETKYTLEAKKWFLKGVKA 665
NK V + D ++RR + I F K +R+ ++L E W L G+
Sbjct: 623 ANKLPRVLDNTDGFFRRMLPIEFKKQFLEDDPDRNPHLFEELIEHELSEIFHWALVGLHR 682
Query: 666 YISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQE 725
+G + + + R+ + QA+++D C++ + + SL KSY EY +
Sbjct: 683 LYEQG-KFTSCDETRELLMDYRRLNNPVQAFVEDKCELEDGAKQSKDSLYKSYREYSSEN 741
Query: 726 LNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFE 776
+ + L + +K + K R++ G+K K +
Sbjct: 742 G---YQAMHKENFFRELYAA--VKTLKETRPSINGKRCRMVAGIKTKFELK 787
>gi|221213691|ref|ZP_03586665.1| phage/plasmid primase, P4 family [Burkholderia multivorans CGD1]
gi|221166480|gb|EED98952.1| phage/plasmid primase, P4 family [Burkholderia multivorans CGD1]
Length = 487
Score = 230 bits (586), Expect = 8e-58, Method: Composition-based stats.
Identities = 80/538 (14%), Positives = 157/538 (29%), Gaps = 73/538 (13%)
Query: 49 LPACGFGFVCGVGEQPLYAFDIDSK--DEKTANTFKDTFEILHGTPIVRIGQKPKILIPF 106
+ G + D+D K D + + P R P
Sbjct: 13 CADYNVAYATGPASGYVLVVDVDVKNGDATGLKSISRLEKEHGPLPPTRKVFTPSGGYHL 72
Query: 107 RMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLS 166
K + + +D+ G Y +A + Y + P + P
Sbjct: 73 IYRYPENLKVPSRINFLPRVDVKAEGGYCLAPP-SIINDEPYFYDEPVL--PISRAP--- 126
Query: 167 EEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSH 226
+L + + +KS N N + + +
Sbjct: 127 ----AWLLELLCSTQGTKPRKRKSAKSKSATIGNRNESVAFEGFSLLNAGLNPDLLEE-- 180
Query: 227 DEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRST 286
+ Y+ N + + +I
Sbjct: 181 -----------------------------ELLEYNATNCDPPLSESEVSQIAANV----- 206
Query: 287 FTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSL 346
+S ++ + SR +D N S Y ++ K W +K + W
Sbjct: 207 ASSHQKNNDSV-------SRATDLGNAKRMSELYSDTLRYVSEMKRWLEKSPSGA--WRF 257
Query: 347 TLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTA 406
+ + ++ M D +P + E N K
Sbjct: 258 IDELRVLLLAREIIPMIHDEI-----------RRLNPGNRRELMDHAKYSESNKALKDAV 306
Query: 407 QSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPS 466
+ + ++++ LD ++G++DL TG+ + L+IT++ G F
Sbjct: 307 ELFRSEPGIAVSASNLDEGEWMFPAKNGLVDLRTGKFMPMDPALHITQTAGVNFDPDATC 366
Query: 467 QEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF 525
+ + + E+++Y R +G L G G +GKST +NL++ F
Sbjct: 367 PRWEAFLLEIMNGNVELVEYLRRAIGYTLTCQTSEHALFFAFGSGANGKSTFLNLLRALF 426
Query: 526 GNQYVINAEASDIMQNRPPEAGKAN---PSLIRLMGSRIVIISETNENDEINAAKIKQ 580
G+ A ++ +A +N + RL+G R+V +SE E + +K
Sbjct: 427 GDLGA-QANGDMLLDKNGGQAMSSNASSSEVARLVGKRLVAMSEVEEGRHFSEKTVKW 483
>gi|227544668|ref|ZP_03974717.1| possible ATPase [Lactobacillus reuteri CF48-3A]
gi|227185350|gb|EEI65421.1| possible ATPase [Lactobacillus reuteri CF48-3A]
Length = 207
Score = 228 bits (582), Expect = 2e-57, Method: Composition-based stats.
Identities = 57/215 (26%), Positives = 92/215 (42%), Gaps = 14/215 (6%)
Query: 565 SETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWW 624
+E E +N + +KQ+ D + A Y +S +P S T + N V D+ W
Sbjct: 2 AELEEGKRLNTSIVKQLCSTDEIYAEKKYMKPFSFTP-SHTIVLYTNYLPHVGGNDEGIW 60
Query: 625 RRYIVIPFDKPIANRD--ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKA 682
RR IVIPF IA R+ ++AQ L K +W ++G + I + + P KA
Sbjct: 61 RRLIVIPFKATIAKRNDIKNYAQYLTEKAGPAVLQWIIEGAQRTIQQNYRLTTPAAVEKA 120
Query: 683 KEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNL 742
D ++++ C++ ++S L + Y EY + Y R ST L
Sbjct: 121 VNAYHADNDWLGHFLNEKCELNPEYEQKSGDLYQKYREYCQGIGEYIR---STTDFYTAL 177
Query: 743 KQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFES 777
K GF + ++ R I+GL+LK +
Sbjct: 178 KNAGFQ--------RQHKQNGRFIEGLRLKVDADE 204
>gi|85709926|ref|ZP_01040991.1| primase, putative [Erythrobacter sp. NAP1]
gi|85688636|gb|EAQ28640.1| primase, putative [Erythrobacter sp. NAP1]
Length = 774
Score = 228 bits (580), Expect = 4e-57, Method: Composition-based stats.
Identities = 136/808 (16%), Positives = 264/808 (32%), Gaps = 93/808 (11%)
Query: 16 NGFKLIPLRLGDKR---------------PQRLGKWEEQLLSSEKIDKLPACGFGFVCGV 60
G++LIPL DKR P + + I +L G G V
Sbjct: 17 AGYQLIPLHRWDKRRMDDRTGKVRELGKAPIDKNWTTRAHDNCDAIARLQ-RGGGNVGVR 75
Query: 61 GEQPLYAFDIDSKDEKTANTFKDTFEILH-------GTPIVRIGQKPKILIPFRMNKEGI 113
D D +++ + D E + G P VR G L + +
Sbjct: 76 LRDTDLVIDWDPRNDSGQWSMGDYVEFILRNGLDPTGWPTVRTGSG--GLHHYLTKLADL 133
Query: 114 KKKKTTESTQGHLDILGCGQYFVAYN-IHPKTKKEYTWTTPPH-RFKVEDTPLLSEEDVE 171
+ + E ++ G+ VA IHP T + Y W P F D P +
Sbjct: 134 RIVERPEGYPS-IEFKTVGRQVVAPGSIHP-TGELYRWEGEPVGMFGAPDAP-------D 184
Query: 172 YLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIP 231
L + + + P + + Y+ E+ + L E + H +W+
Sbjct: 185 RLLESARRHSKPSTVPSRCGV------------YSPEELASMLDALDPEDFE-EHADWLE 231
Query: 232 VVMAVHHETRGSSKGKEIARRWSKQGSTYDE--ENFNYKWDTFDFEEIGDTAKKRSTFTS 289
++MA HH T G G+E WS Y + E +WD+ + G +
Sbjct: 232 IMMACHHATAG--DGREEFIEWSTSDPAYADHAEEIASRWDSLSIDRSGGITYRTLHKAL 289
Query: 290 LFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGH---FLYTADTKAWYKKDKNNVYIWSL 346
+ G +IP+ A F D ++ +Y A KN + +
Sbjct: 290 IEAGRGDVIPRPDPADDFDDELPATASVSSERRWPTKVVYEEKHGA-----KNARHFLAR 344
Query: 347 TLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTA 406
++ S + +++ + + + ++ + + ++V + + S
Sbjct: 345 RPGRLICS-DGKVYDLRD---GIWQTRSEAMLRAEIRKTDPTDNLDVEHVNKMVRGISDL 400
Query: 407 QSLEAGSIFSITSDLLDSSSRFLG-EQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP 465
++ EA + +D+ + ++G+LD+ + + T F
Sbjct: 401 RATEARPFDWLEESPIDAGPGDIALFRNGLLDVRSRTLHPLDGSYFATGLPEHGFDADAS 460
Query: 466 SQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF 525
++ + +G + +A + +++ GV GKST + K
Sbjct: 461 CPSWMRWLDESLA-PSFHPTLQEWMGYLMTADTRAHKIMNLIGVKRGGKSTAAQVCKDLV 519
Query: 526 GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISET----NENDEINAAKIKQM 581
G Q+V ++ I + E + R++++ + + I +IK
Sbjct: 520 GRQHVHSSTLEGIAGDFGLEPC---------VDKRLLVVPDAHDVNSAKRAIALERIKMF 570
Query: 582 TGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR-D 640
TGGD + + + + +V NK + A R I+I F+ R D
Sbjct: 571 TGGDEVDVNRKNISVIQATLPT-RLMVVANKLPKFIDESGALAARAIIIKFETSFQGRED 629
Query: 641 ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEV--CLKAKEEERQGTDTYQAWID 698
A KL + W L+G+ S GL I E A E +
Sbjct: 630 HELAAKLRAE-MSGIANWALEGLDRLRSNGLAFTIGEAGRLEAATSE--LSQSPALRFAR 686
Query: 699 DCCDI--GENLWEESHSLAKSYSEYREQELNYDRKRISTR----TVTLNLKQKGFIGGIK 752
+ I + + ++Y ++ E + + + L + +
Sbjct: 687 ERLSITCDQRDAVPMREVYRAYQDWALTEGLSRGETRNQTDLASDLNAALPELKYKQRRM 746
Query: 753 REKIEKEWKSKRIIKGLKLKPAFESVDD 780
+ + + K + G+ + E DD
Sbjct: 747 KSRAGRRAKQTYCLTGVSSVVSTEDFDD 774
>gi|219855934|ref|YP_002473056.1| hypothetical protein CKR_2591 [Clostridium kluyveri NBRC 12016]
gi|219569658|dbj|BAH07642.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 484
Score = 227 bits (578), Expect = 7e-57, Method: Composition-based stats.
Identities = 68/400 (17%), Positives = 141/400 (35%), Gaps = 29/400 (7%)
Query: 394 QNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILD---LETGQKVK--PTK 448
++ E S + +++ +L+ + + +G+LD L G+ + +
Sbjct: 90 RSFIEPSDLRKLYEAIRLEPSIQFNPELVPDNKYLINCHNGVLDFNTLSNGKPIIMYHNE 149
Query: 449 ELYITKSTGTPFVEGEPSQE--FLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIH 505
+ F + +++ +G N A++
Sbjct: 150 IYRFINCVQANYNPNYSINNSYFERFIVNITKGDNQLIILIQEILGYIFSNFNNAKKAFI 209
Query: 506 IRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIIS 565
+ G SGKS + +I G + V N ++ + + +L G I I S
Sbjct: 210 LFGESNSGKSVFLRVIASICGEENVSNVPLQNLSDEKY---------VAKLYGKLINIYS 260
Query: 566 ETNENDEINAAKIKQMTG-GDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDD--- 621
E + + I+ A K + D + AR + +S N ++ P
Sbjct: 261 ELPDKEIIDTATFKSLVSETDKVNARKLFKAPFSFY-NKCKLIFATNNLPEIKTPSYKDN 319
Query: 622 -AWWRRYIVIPFDKPIAN--RDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEV 678
A++ R I+IPF I +D + KL + L W + G+ YI G
Sbjct: 320 LAFFNRLILIPFQVSIPENYQDKNLIYKLLYEKDL-IFSWAVDGLIRYIKNGFKFSGCHA 378
Query: 679 CLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738
+++ ++I++ C + N + L +Y+EY + R +
Sbjct: 379 STSLLNSYMNNSNSMLSFINEMCLLDRNSYVHFDKLVGAYAEYCKNNFLDTTTTKDKRQL 438
Query: 739 TLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESV 778
LKQK + +++ ++ +K +GL+L + +
Sbjct: 439 KNILKQK---YKLIYKRLNRKDGNKYGFEGLRLLENHDDM 475
>gi|153955539|ref|YP_001396304.1| hypothetical protein CKL_2924 [Clostridium kluyveri DSM 555]
gi|146348397|gb|EDK34933.1| Phage-related protein [Clostridium kluyveri DSM 555]
Length = 472
Score = 227 bits (578), Expect = 7e-57, Method: Composition-based stats.
Identities = 68/400 (17%), Positives = 141/400 (35%), Gaps = 29/400 (7%)
Query: 394 QNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILD---LETGQKVK--PTK 448
++ E S + +++ +L+ + + +G+LD L G+ + +
Sbjct: 78 RSFIEPSDLRKLYEAIRLEPSIQFNPELVPDNKYLINCHNGVLDFNTLSNGKPIIMYHNE 137
Query: 449 ELYITKSTGTPFVEGEPSQE--FLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIH 505
+ F + +++ +G N A++
Sbjct: 138 IYRFINCVQANYNPNYSINNSYFERFIVNITKGDNQLIILIQEILGYIFSNFNNAKKAFI 197
Query: 506 IRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIIS 565
+ G SGKS + +I G + V N ++ + + +L G I I S
Sbjct: 198 LFGESNSGKSVFLRVIASICGEENVSNVPLQNLSDEKY---------VAKLYGKLINIYS 248
Query: 566 ETNENDEINAAKIKQMTG-GDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDD--- 621
E + + I+ A K + D + AR + +S N ++ P
Sbjct: 249 ELPDKEIIDTATFKSLVSETDKVNARKLFKAPFSFY-NKCKLIFATNNLPEIKTPSYKDN 307
Query: 622 -AWWRRYIVIPFDKPIAN--RDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEV 678
A++ R I+IPF I +D + KL + L W + G+ YI G
Sbjct: 308 LAFFNRLILIPFQVSIPENYQDKNLIYKLLYEKDL-IFSWAVDGLIRYIKNGFKFSGCHA 366
Query: 679 CLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738
+++ ++I++ C + N + L +Y+EY + R +
Sbjct: 367 STSLLNSYMNNSNSMLSFINEMCLLDRNSYVHFDKLVGAYAEYCKNNFLDTTTTKDKRQL 426
Query: 739 TLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESV 778
LKQK + +++ ++ +K +GL+L + +
Sbjct: 427 KNILKQK---YKLIYKRLNRKDGNKYGFEGLRLLENHDDM 463
>gi|269975282|gb|ACZ55506.1| primase [Staphylococcus phage SA1]
Length = 554
Score = 226 bits (577), Expect = 8e-57, Method: Composition-based stats.
Identities = 79/409 (19%), Positives = 141/409 (34%), Gaps = 64/409 (15%)
Query: 6 WKEQAKQAIHNGFKLIPLRLGDKRPQRLGK------WEEQLLSSEKIDKLPACGFGFVCG 59
W+E + NG+ ++P+ D + GK WE + E+I + G
Sbjct: 4 WQEYGETLWGNGYTVVPIYAPDADKKGAGKRPIGKDWERTINDKEQIQRWAERYTKNGIG 63
Query: 60 VGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTT 119
+ + A DID DE D G RIG++PK L FR K K
Sbjct: 64 ILTKYTPAVDIDVYDEDAVAHMADWVLENVGRAPCRIGREPKKLFLFRTESPFSKVKSGV 123
Query: 120 E----STQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFK 175
+ ++IL GQ FVAY IHP T ++Y W ++ PL + D +
Sbjct: 124 WEDDFGQRHAVEILADGQQFVAYGIHPDTNRDYYWLD-------DENPLNNAADFD---- 172
Query: 176 FFQEITVPLVKDKK----SIIPSKTW-----TNNNNRQYTNREITAFLSCFGEEFYNGSH 226
+EI++ ++ + W N + + + G ++G++
Sbjct: 173 -LEEISLDTAREIAAEFDRYAKEQGWTMVKRPMNGYEAIGTADEEDWAATAGIRKWDGTY 231
Query: 227 DE----------------WIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWD 270
++ +I V+ A+ R + K IAR W+ Q +D+ +F YKWD
Sbjct: 232 EDLRDLVMKYPNPEDYENYIKVLAALQISCRDQDEAKSIAREWAMQAHNFDDGDFEYKWD 291
Query: 271 TFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADT 330
A + T S+ ++ + + ++ + F D
Sbjct: 292 K----GFAHNASRLVTLGSIITEVREI-----------EKAEQEEKAVEYREAFAECTDE 336
Query: 331 KAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKN 379
K W + + +I+ + + D +
Sbjct: 337 KDWNAWAE--SFRKEPIFGMTRKTIVQVAAEAYLRIKNYRMTANDKKEQ 383
>gi|311070553|ref|YP_003975476.1| P4 family phage/plasmid primase [Bacillus atrophaeus 1942]
gi|310871070|gb|ADP34545.1| P4 family phage/plasmid primase [Bacillus atrophaeus 1942]
Length = 608
Score = 226 bits (577), Expect = 9e-57, Method: Composition-based stats.
Identities = 73/482 (15%), Positives = 162/482 (33%), Gaps = 27/482 (5%)
Query: 295 GKLIPKGLLASRFSDAYNKAMFSIYKKGH-FLYTADTKAWYKKDKNNVYIWSLTLDKITA 353
+LI L+ + + + FLY D K Y + N L + +
Sbjct: 131 AELIADALVPEALLLELGQVLKVGKAEERGFLYD-DIKKRYHFNANIFAKHFLKRCHVRS 189
Query: 354 SIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGS 413
+ L + K ++ + E +
Sbjct: 190 TKDGRLFLYNRVGVYEELSEVNLRKIIRAVMHEGKCYSWKSTYET----EIIRALQREAP 245
Query: 414 IFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLV 473
I + +++ F+ ++G+L+L T + + + + T + E + +F + +
Sbjct: 246 IV----EEMNTERNFINVKNGMLNLSTYRLHEHSPKYLSTVQIPIHYDENATASKFDEFM 301
Query: 474 SGY-FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532
+ E++ +G L G KA++ ++ G G +GKS L +++ G + V +
Sbjct: 302 RDITLNNPELIAVHQELIGYWLTGETKAEKAVYYYGSGANGKSVLASIVTELVGPENVSS 361
Query: 533 AEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDE-INAAKIKQMTGGDCMTARL 591
S E+ ++G + I +E + + K + GD +T +
Sbjct: 362 VPLSKFNDQFGMES---------MIGKSLNISAENEMGGKALKTENFKAIVSGDNITINI 412
Query: 592 NYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLET 649
Y S P F+V N + + ++R+ I++PF + R+ + +L
Sbjct: 413 KYRPAVSYRPYCRLVFLV-NNLPDSSDVTEGYFRKLIIVPFSRTFKKEERNVNLKDELL- 470
Query: 650 KYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWE 709
K W + G+K S + + + + + + +
Sbjct: 471 KELPGILNWAVLGLKRLRSNDYQFSACKAIEETERAYYDEQNPVKEFFHSHVVQEDGSRT 530
Query: 710 ESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGL 769
+ YS++ + D+ S + K + + ++K+ K G+
Sbjct: 531 KQSDFYSMYSQWLNVQGIDDKGTKSRQVFWRYFKV--ILDSENIQVVKKKVKGTVYYDGI 588
Query: 770 KL 771
KL
Sbjct: 589 KL 590
>gi|306826829|ref|ZP_07460130.1| virulence-associated protein E [Streptococcus pyogenes ATCC 10782]
gi|304430992|gb|EFM34000.1| virulence-associated protein E [Streptococcus pyogenes ATCC 10782]
Length = 794
Score = 226 bits (576), Expect = 1e-56, Method: Composition-based stats.
Identities = 91/558 (16%), Positives = 195/558 (34%), Gaps = 55/558 (9%)
Query: 226 HDEWIPVVMAVHHETRGSSK----GKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTA 281
+D+ V HH T ++ R + E++ K + T
Sbjct: 284 YDD---VFAYSHHGTDPVGDTLVNAYDLVRI-----HKFGEQDSEAK-------DNTPTN 328
Query: 282 KKRSTFT-SLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNN 340
K S+ + F I L+A D +++ + D ++W + D+
Sbjct: 329 KLPSSKAMNAFVCDLPEIKDYLMAEALGD-FDEELP----------VEDDRSWLEIDERG 377
Query: 341 VYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENS 400
+ A+ + V + D F+ + + + + + + +
Sbjct: 378 ---EPEVNSYLLATQIIKEVPIYWDGFEFLRYDAKKGIWLPNAEEFIRSYISTKKLGKIT 434
Query: 401 KAKSTAQSLEAGSIFSITSDLL-DSSSRFLGEQDGILDLETGQKV-KPTKELYITKSTGT 458
K + ++++ A + +S++ +S + +G+ DL K EL+ S
Sbjct: 435 KIRHISETIVAIKAQAFSSEVFTESDLNKIVLANGVYDLRDNSFKTKFDPELHARSSHPV 494
Query: 459 PFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLM 518
+ + F + E +D+ G Q+ + I G GG+GKSTL+
Sbjct: 495 VYDPEAACETFEGFLRETV-GAENIDFIFEWFGYNFYREYTIQKMLFIYGSGGTGKSTLI 553
Query: 519 NLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKI 578
N+++ G +MQ R + G L ++ + A +
Sbjct: 554 NILREMIGADNYSAVTLQYLMQERFAKIG--------LYRKTANFDTDAKPQYLADGATL 605
Query: 579 KQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN 638
K +TG D + A + + N+ +R+ RR +++ DK +
Sbjct: 606 KMLTGEDTIHADRKNKEPINFYNYA-KLSFAMNELPPMRDFSGGLKRRMMILEMDKVLTQ 664
Query: 639 R-DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWI 697
A + ++G++ +SK D I + + E+ +G D ++
Sbjct: 665 EVKAKYPLDKIMGEVPGIFNRAMEGLRKALSK-RDFSISDSMRSSVEKWEKGNDVVAMFL 723
Query: 698 DDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIE 757
+D C++GE+ + +Y Y + + K ++ + T + + F + + +
Sbjct: 724 EDECELGEDFKVPVRDVYPAYKFYCQ---DSGYKPLARNSFTQRMNELNF----ENKNAK 776
Query: 758 KEWKSKRIIKGLKLKPAF 775
K+ R G +LK F
Sbjct: 777 MGGKTVRCWIGFRLKGEF 794
>gi|254518128|ref|ZP_05130184.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA]
gi|226911877|gb|EEH97078.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA]
Length = 553
Score = 226 bits (575), Expect = 1e-56, Method: Composition-based stats.
Identities = 50/323 (15%), Positives = 119/323 (36%), Gaps = 14/323 (4%)
Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY-FESEEVM 483
+ +G+ ++ T + + K+ T + +++ F + +E++
Sbjct: 200 DDTLIAFNNGVYNVVTKKLLPHDKKYMFTSKSPIDYLKDADCPIFKKAIKEITCNDDELL 259
Query: 484 DYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP 543
G AL+ KA+R GVG +GKS ++ G V N + S +
Sbjct: 260 SCLQEIFGNALINNTKAERAFFFTGVGSNGKSFCSEVLTEIVGVNNVSNIQLSKFSERFG 319
Query: 544 PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPAS 603
E ++ + I +E I+ +K + GD + + + ++
Sbjct: 320 IEG---------IVSKTLNIANENELGGAISTENLKAIISGDTINISRKFKQAINYK-ST 369
Query: 604 FTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEAKKWFLK 661
+ N + ++R+ +++PF++ + D +K+ T+ + W L+
Sbjct: 370 IKLIFLLNTLPDTLDNTHGYYRKILIVPFNRVFKPEDIDKKLKEKVCTELS-GVLNWCLE 428
Query: 662 GVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEY 721
G + I+ + + K + ++ + +A++++ E E ++ +Y +
Sbjct: 429 GAERLINNDYNFTESKAIEKVTKAYKEEQNPVEAYLNEVLVYEEGSSETKKAVLDAYKSW 488
Query: 722 REQELNYDRKRISTRTVTLNLKQ 744
E E R S + L
Sbjct: 489 IEGEGISARGSDSPQRFWRALNN 511
>gi|209808767|gb|ACI88730.1| gp88 [Mycobacterium phage Troll4]
Length = 982
Score = 226 bits (575), Expect = 2e-56, Method: Composition-based stats.
Identities = 85/393 (21%), Positives = 149/393 (37%), Gaps = 50/393 (12%)
Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP--------- 465
+ + D + + + + + +E +T STGT ++ +
Sbjct: 594 LAEDDEEFDPDYEAVA-PNSHV-----RLREIRREDLLTLSTGTNYLPWQELVAGEFGKQ 647
Query: 466 ----SQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLI 521
+ + V Y EEV + + +G +LLG N+ + + + G GSGKST +N
Sbjct: 648 EALYASTWARAVEMYLPDEEVRLFLQKLLGYSLLGDNRERIVVFLHGPTGSGKSTFLNAT 707
Query: 522 KYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM 581
A G+ Y + +R + NP+L + RIV SE ++ + ++A K++
Sbjct: 708 LNALGD-YADVVDLGIFKGDR-----QTNPALAYALPKRIVTCSEASQRNVLHADMFKRI 761
Query: 582 TGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDA 641
TGGD +TA L Y N + +F P+I N + D A R +V+ F++ I +D
Sbjct: 762 TGGDPLTAELKYSNESVKRKPAFVPWIATNTPPSIPGADAAVVDRTVVVGFNEQIRKQDV 821
Query: 642 SFAQKLETK-YTLEAKKWFLKGVKAYISKGLDV-DIPEVCLKAKEEERQGTDTYQAWIDD 699
L + W ++G Y +GL D P E +I +
Sbjct: 822 GMNAMLSSPRAKTAVLAWAVEGWGMYRREGLRRADFPAAVKGESIEFTNQFSDVSEFISE 881
Query: 700 C-------------------CDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTL 740
C CD E + Y + ++ DR + +
Sbjct: 882 CVEEAPVSLRRKAERRNWRVCDWPEEWHTTVSEVYDVYVTWCQENRVADRNIMKKNGFSR 941
Query: 741 NLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773
LK G+ + E ++K+ + R G KL
Sbjct: 942 QLKDYGY----RAEVVKKDGFTSRTYAGFKLSS 970
Score = 56.7 bits (135), Expect = 2e-05, Method: Composition-based stats.
Identities = 15/132 (11%), Positives = 37/132 (28%)
Query: 308 SDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVF 367
SD N + K + Y W + + ++ + E +
Sbjct: 423 SDQGNGDHWIDLHKDNAFYVPALGQWIMWTGKSWIVGDGCAERSYRRVKARQKRYAEQLM 482
Query: 368 DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSR 427
+ E + + + +R A I L+++
Sbjct: 483 RRAAELKAAQDPTANAAVAMAKSWRSWATRSGDVGPIERALKAASMELGIEEGELNANPA 542
Query: 428 FLGEQDGILDLE 439
+ ++G+L+L+
Sbjct: 543 LICCENGVLELD 554
>gi|87198666|ref|YP_495923.1| Phage or plasmid primase P4-like [Novosphingobium aromaticivorans
DSM 12444]
gi|87134347|gb|ABD25089.1| Phage or plasmid primase P4-like protein [Novosphingobium
aromaticivorans DSM 12444]
Length = 540
Score = 226 bits (575), Expect = 2e-56, Method: Composition-based stats.
Identities = 84/502 (16%), Positives = 157/502 (31%), Gaps = 49/502 (9%)
Query: 308 SDAYNKAMFSIYKKGHFLYTADTKA----WYKKDKNNVYIWSLTLD--KITASIMNFLVS 361
+D N G L+ AD W D WS + A V
Sbjct: 15 NDLGNARRLFEAANGRLLWLADGAGGKGCWIAFDGIR---WSADEGPMRALAFAQKAAVE 71
Query: 362 MKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR------QNVEENSKAKSTAQSLEAGSI- 414
+ ++ L E D +F R +++ AK+TA + +
Sbjct: 72 ICDEAHALRECTADELAEVYGRKFSKEMAEERAGQLWTWSIKSGDSAKTTAMQNQFKGLR 131
Query: 415 --------FSITSDLLDSSSRFLGEQDGILDL---ETGQKVK-----PTKELYITKSTGT 458
+ D+ +G L + G + +
Sbjct: 132 DGDEGPFVTQVWQRDFDAQPMAYHCSNGTLRFVQDDAGTWSHVFEKGHRPDDRFMQVANV 191
Query: 459 PFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLM 518
+ ++ +++ + R GM L Q F +G G GKS
Sbjct: 192 AYDAAAKAKAWIERMEVMHHDPVQRTALQRIYGMTLTALISDQAFYIFQGKGQDGKSVTN 251
Query: 519 NLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMG-SRIVIISETNENDEINAAK 577
+++ G Y A+ ++ ++ ++RL G R+V++ E +N + K
Sbjct: 252 DVVCQLHG-MYARKADPKTFLEGPTQQSSGPQSDIVRLAGDVRLVVMDEPKKNSTWDGQK 310
Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI- 636
IKQ TG + + AR + T + N + D + RR+ + P+
Sbjct: 311 IKQATGSEMI-ARGVHATTELSFTPHWQLIAECNGLPKAPSDDRGFRRRFKLYPWVVQFG 369
Query: 637 -----ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTD 691
A+ + W +KG ++++ + V PE +A +
Sbjct: 370 VTPGVADEPVHLVKARLIGEGSGVLNWMIKGCVEWLNERV-VPEPEAAKRATASFWSASS 428
Query: 692 TYQAWIDDCCDI-GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGG 750
WI CD+ EE+ L K++ ++ + + K I+ T L
Sbjct: 429 AMGEWIASHCDLSDPEAREEATPLYKAFRQFCIDRGDDETKIITQTTFGRQLNDAQIYRV 488
Query: 751 IKREKIEKEWKSKRIIKGLKLK 772
+ E G++LK
Sbjct: 489 PNNSTGKVER------VGIRLK 504
>gi|94970778|ref|YP_592826.1| primase P4-like protein [Candidatus Koribacter versatilis Ellin345]
gi|94552828|gb|ABF42752.1| primase P4-like protein [Candidatus Koribacter versatilis Ellin345]
Length = 799
Score = 225 bits (574), Expect = 2e-56, Method: Composition-based stats.
Identities = 68/374 (18%), Positives = 130/374 (34%), Gaps = 22/374 (5%)
Query: 416 SITSDLLDSSSRFLGEQDG-ILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVS 474
+ +L D LG + ++DL T +E YIT+ P+ F +S
Sbjct: 424 PVKGELFDRDPHLLGLPNCRLIDLRTNATRDMRREDYITQRIDVAPDPNCPTPRFDRFIS 483
Query: 475 GY-FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN-QYVIN 532
+ +Y R + L Q + G G +GK L+ + G+ ++
Sbjct: 484 EITCGDGPLANYLLRLCALCLT-AIPFQALFFLWGRGRNGKGVLIRTLTAILGDGKFAWP 542
Query: 533 AEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLN 592
+I ++ + A + L G R+ ++E+ + +N + +K ++GGD +T
Sbjct: 543 LRPGEITVSKFGD-EAAKRTFANLKGRRLATVNESVAGN-LNTSMLKLISGGDTLTGANM 600
Query: 593 YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR-DASFAQKLETKY 651
+ + P + + N + D A+ R +IPF R D + L+
Sbjct: 601 RQDQQAFKP-THKVLLPTNDRPQLP-ADPAFRGRVHMIPFLANFTGREDTNLDHVLQHVE 658
Query: 652 TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEES 711
F+ I GL P L E+ D + + DDC +I + +
Sbjct: 659 LPGILYRFVTLCPDVIENGLRP--PASVLAETEQLFSELDITKQFRDDCLEIVDGAETPA 716
Query: 712 HSLAKSYSEYREQELNYDRKRIST----------RTVTLNLKQKGFIGGIKREKIEKEWK 761
+ + + + ++ S+ R + K K + K
Sbjct: 717 ADVERVVNSWVREQSTTGIVVSSSGREGPDDVILRELKHQPDIKYSRLRRKTGETSPHGK 776
Query: 762 SKR-IIKGLKLKPA 774
K G++LK
Sbjct: 777 GKAWYFVGVRLKEE 790
>gi|109522656|ref|YP_655468.1| gp89 [Mycobacterium phage PLot]
gi|88910763|gb|ABD58688.1| gp89 [Mycobacterium phage PLot]
Length = 983
Score = 225 bits (573), Expect = 2e-56, Method: Composition-based stats.
Identities = 85/393 (21%), Positives = 149/393 (37%), Gaps = 50/393 (12%)
Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP--------- 465
+ + D + + + + + +E +T STGT ++ +
Sbjct: 595 LAEDDEEFDLDYEAVA-PNSHV-----RLREIRREDLLTLSTGTNYLPWQELVAGEFGKQ 648
Query: 466 ----SQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLI 521
+ + V Y EEV + + +G +LLG N+ + + + G GSGKST +N
Sbjct: 649 EALYASTWARAVEMYLPDEEVRLFLQKLLGYSLLGDNRERIVVFLHGPTGSGKSTFLNAT 708
Query: 522 KYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM 581
A G+ Y + +R + NP+L + RIV SE ++ + ++A K++
Sbjct: 709 LNALGD-YADVVDLGIFKGDR-----QTNPALAYALPKRIVTCSEASQRNVLHADMFKRI 762
Query: 582 TGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDA 641
TGGD +TA L Y N + +F P+I N + D A R +V+ F++ I +D
Sbjct: 763 TGGDPLTAELKYSNESVKRKPAFVPWIATNTPPSIPGADAAVVDRTVVVGFNEQIRKQDV 822
Query: 642 SFAQKLETK-YTLEAKKWFLKGVKAYISKGLDV-DIPEVCLKAKEEERQGTDTYQAWIDD 699
L + W ++G Y +GL D P E +I +
Sbjct: 823 GMNAMLSSPRAKTAVLAWAVEGWGMYRREGLRRADFPAAVKGESIEFTNQFSDVSEFISE 882
Query: 700 C-------------------CDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTL 740
C CD E + Y + ++ DR + +
Sbjct: 883 CVEEAPVSLRRKAERRNWRVCDWPEEWHTTVSEVYDVYVTWCQENRVADRNIMKKNGFSR 942
Query: 741 NLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773
LK G+ + E ++K+ + R G KL
Sbjct: 943 QLKDYGY----RAEVVKKDGFTSRTYAGFKLNS 971
Score = 57.4 bits (137), Expect = 8e-06, Method: Composition-based stats.
Identities = 15/132 (11%), Positives = 37/132 (28%)
Query: 308 SDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVF 367
SD N + K + Y W + + ++ + E +
Sbjct: 423 SDQGNGDHWIDLHKDNAFYVPALGQWIMWTGKSWIVGDGCAERSYRRVKARQKRYAEQLM 482
Query: 368 DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSR 427
+ E + + + +R A I L+++
Sbjct: 483 RRAAELKAAQDPTANAAVAMAKSWRSWATRSGDVGPIERALKAASMELGIEESELNANPA 542
Query: 428 FLGEQDGILDLE 439
+ ++G+L+L+
Sbjct: 543 LICCENGVLELD 554
>gi|206599705|ref|YP_002241584.1| gp86 [Mycobacterium phage Butterscotch]
gi|206282887|gb|ACI06374.1| gp86 [Mycobacterium phage Butterscotch]
Length = 983
Score = 224 bits (572), Expect = 4e-56, Method: Composition-based stats.
Identities = 85/393 (21%), Positives = 148/393 (37%), Gaps = 50/393 (12%)
Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP--------- 465
+ D + + + + + +E +T STGT ++ +
Sbjct: 595 LVEDDEEFDPDYEAVA-PNSHV-----RLREIRREDLLTLSTGTNYLPWQELVAGEFGKQ 648
Query: 466 ----SQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLI 521
+ + V Y EEV + + +G +LLG N+ + + + G GSGKST +N
Sbjct: 649 EALYASTWARAVEMYLPDEEVRLFLQKLLGYSLLGDNRERIVVFLHGPTGSGKSTFLNAT 708
Query: 522 KYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM 581
A G+ Y + +R + NP+L + RIV SE ++ + ++A K++
Sbjct: 709 LNALGD-YADVVDLGIFKGDR-----QTNPALAYALPKRIVTCSEASQRNVLHADMFKRI 762
Query: 582 TGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDA 641
TGGD +TA L Y N + +F P+I N + D A R +V+ F++ I +D
Sbjct: 763 TGGDPLTAELKYSNESVKRKPAFVPWIATNTPPSIPGADAAVVDRTVVVGFNEQIRKQDV 822
Query: 642 SFAQKLETK-YTLEAKKWFLKGVKAYISKGLDV-DIPEVCLKAKEEERQGTDTYQAWIDD 699
L + W ++G Y +GL D P E +I +
Sbjct: 823 GMNAMLSSPRAKTAVLAWAVEGWGMYRREGLRRADFPAAVKGESIEFTNQFSDVSEFISE 882
Query: 700 C-------------------CDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTL 740
C CD E + Y + ++ DR + +
Sbjct: 883 CVEEAPVSLRRKAERRNWRVCDWPEEWHTTVSEVYDVYVTWCQENRVADRNIMKKNGFSR 942
Query: 741 NLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773
LK G+ + E ++K+ + R G KL
Sbjct: 943 QLKDYGY----RAEVVKKDGFTSRTYAGFKLSS 971
Score = 56.7 bits (135), Expect = 2e-05, Method: Composition-based stats.
Identities = 15/132 (11%), Positives = 37/132 (28%)
Query: 308 SDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVF 367
SD N + K + Y W + + ++ + E +
Sbjct: 423 SDQGNGDHWIDLHKDNAFYVPALGQWIMWTGKSWIVGDGCAERSYRRVKARQKRYAEQLM 482
Query: 368 DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSR 427
+ E + + + +R A I L+++
Sbjct: 483 RRAAELKAAQDPTANAAVAMAKSWRSWATRSGDVGPIERALKAASMELGIEEGELNANPA 542
Query: 428 FLGEQDGILDLE 439
+ ++G+L+L+
Sbjct: 543 LICCENGVLELD 554
>gi|109522857|ref|YP_655277.1| gp81 [Mycobacterium phage PBI1]
gi|88910570|gb|ABD58497.1| gp81 [Mycobacterium phage PBI1]
Length = 983
Score = 224 bits (571), Expect = 5e-56, Method: Composition-based stats.
Identities = 85/393 (21%), Positives = 148/393 (37%), Gaps = 50/393 (12%)
Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP--------- 465
+ D + + + + + +E +T STGT ++ +
Sbjct: 595 LVEDDEEFDPDYEAVA-PNSHV-----RLREIRREDLLTLSTGTNYLPWQELVAGEFGKQ 648
Query: 466 ----SQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLI 521
+ + V Y EEV + + +G +LLG N+ + + + G GSGKST +N
Sbjct: 649 EALYASTWARAVEMYLPDEEVRLFLQKLLGYSLLGDNRERIVVFLHGPTGSGKSTFLNAT 708
Query: 522 KYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM 581
A G+ Y + +R + NP+L + RIV SE ++ + ++A K++
Sbjct: 709 LNALGD-YADVVDLGIFKGDR-----QTNPALAYALPKRIVTCSEASQRNVLHADMFKRI 762
Query: 582 TGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDA 641
TGGD +TA L Y N + +F P+I N + D A R +V+ F++ I +D
Sbjct: 763 TGGDPLTAELKYSNESVKRKPAFVPWIATNTPPSIPGADAAVVDRTVVVGFNEQIRKQDV 822
Query: 642 SFAQKLETK-YTLEAKKWFLKGVKAYISKGLDV-DIPEVCLKAKEEERQGTDTYQAWIDD 699
L + W ++G Y +GL D P E +I +
Sbjct: 823 GMNAMLSSPRAKTAVLAWAVEGWGMYRREGLRRADFPAAVKGESIEFTNQFSDVSEFISE 882
Query: 700 C-------------------CDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTL 740
C CD E + Y + ++ DR + +
Sbjct: 883 CVEEAPVSLRRKAERRNWRVCDWPEEWHTTVSEVYDVYVTWCQENRVADRNIMKKNGFSR 942
Query: 741 NLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773
LK G+ + E ++K+ + R G KL
Sbjct: 943 QLKDYGY----RAEVVKKDGFTSRTYAGFKLSS 971
Score = 56.3 bits (134), Expect = 2e-05, Method: Composition-based stats.
Identities = 15/132 (11%), Positives = 37/132 (28%)
Query: 308 SDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVF 367
SD N + K + Y W + + ++ + E +
Sbjct: 423 SDQGNGDHWIDLHKDNAFYVPALGQWIMWTGKSWIVGDGCAERSYRRVKARQKRYAEQLM 482
Query: 368 DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSR 427
+ E + + + +R A I L+++
Sbjct: 483 RRAAELKAAQDPTANAAVAMAKSWRSWATRSGDVGPIERALKAASMELGIEEGELNANPA 542
Query: 428 FLGEQDGILDLE 439
+ ++G+L+L+
Sbjct: 543 LICCENGVLELD 554
>gi|71911262|ref|YP_282812.1| DNA primase [Streptococcus pyogenes MGAS5005]
gi|94989081|ref|YP_597182.1| DNA primase [Streptococcus pyogenes MGAS9429]
gi|94992972|ref|YP_601071.1| DNA primase [Streptococcus pyogenes MGAS2096]
gi|71854044|gb|AAZ52067.1| DNA primase [Streptococcus pyogenes MGAS5005]
gi|94542589|gb|ABF32638.1| DNA primase [Streptococcus pyogenes MGAS9429]
gi|94546480|gb|ABF36527.1| DNA primase [Streptococcus pyogenes MGAS2096]
Length = 794
Score = 224 bits (570), Expect = 6e-56, Method: Composition-based stats.
Identities = 72/452 (15%), Positives = 162/452 (35%), Gaps = 24/452 (5%)
Query: 327 TADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFW 386
D ++W + D+ + A+ + V + D + + +
Sbjct: 364 VEDDRSWLEIDERG---EPEVNSYLLATQIIKEVPIYWDGLEFLRYDAKKGIWLPNAEEY 420
Query: 387 FNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLL-DSSSRFLGEQDGILDLETGQKV- 444
+ + + + +K + ++++ A + +S++ +S + +G+ DL
Sbjct: 421 LKSYISTKKLGKITKIRHISETVVAIKAQAFSSEVFTESDLNKIVLANGVYDLRDNNFKT 480
Query: 445 KPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFI 504
K EL+ S + + F + E +D+ G Q+ +
Sbjct: 481 KFDPELHARSSHPVVYDPEATCETFEGFLRETV-GAENIDFIFEWFGYNFYREYTIQKML 539
Query: 505 HIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVII 564
I G GG+GKSTL+N+++ G +MQ R + G L
Sbjct: 540 FIYGSGGTGKSTLINILREMIGADNYSAVTLQYLMQERFAKIG--------LYRKTANFD 591
Query: 565 SETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWW 624
++ + A +K +TG D + A + + N+ +R+
Sbjct: 592 TDAKPQYLADGAALKMLTGEDTIHADRKNKEPINFYNYA-KLSFAMNELPPMRDFSGGLK 650
Query: 625 RRYIVIPFDKPIANR-DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAK 683
RR +++ DK + A + ++G++ +SK D I +
Sbjct: 651 RRMMILEMDKVLTQEVKAKYPLDKIMSEVPGIFNRAMEGLRKALSK-RDFSISASMRSSV 709
Query: 684 EEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLK 743
E+ +G D +++D C++GE+ + +Y Y + + K ++ L+
Sbjct: 710 EKWEKGNDVVAMFLEDECELGEDFKVPVRDVYPAYKFYCQ---DSGYKPLAKNAFNHRLR 766
Query: 744 QKGFIGGIKREKIEKEWKSKRIIKGLKLKPAF 775
+ + + + ++ + K + G +LK F
Sbjct: 767 ELNY----ENKNVKSDGKQAKNWVGFRLKSEF 794
>gi|157311152|ref|YP_001469197.1| primase [Streptococcus phage P9]
gi|119104301|gb|ABL61046.1| primase [Streptococcus phage P9]
Length = 497
Score = 223 bits (568), Expect = 1e-55, Method: Composition-based stats.
Identities = 73/452 (16%), Positives = 162/452 (35%), Gaps = 24/452 (5%)
Query: 327 TADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFW 386
D ++W + D+ + A+ + V + D + + +
Sbjct: 67 VEDDRSWLEIDERG---EPEVNSYLLATQIIKEVPIYWDGLEFLRYDAKKGIWLPNAEEY 123
Query: 387 FNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLL-DSSSRFLGEQDGILDLETGQKV- 444
+ + + + +K + ++++ A + +S++ +S + +G+ DL
Sbjct: 124 LKSYISTKKLGKITKIRHISETIVAIKAQAFSSEVFTESDLNKIVLVNGVYDLRDNSFKT 183
Query: 445 KPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFI 504
K EL+ S + + F + E +D+ G Q+ +
Sbjct: 184 KFDPELHARSSHPVAYAPEAACETFEGFLRETV-GAENIDFIFEWFGYNFYREYTIQKML 242
Query: 505 HIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVII 564
I G GG+GKSTL+N+++ G +MQ R + G L
Sbjct: 243 FIYGSGGTGKSTLINILREMIGADNYSAVTLQYLMQERFAKIG--------LYRKTANFD 294
Query: 565 SETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWW 624
++ + A +K +TG D + A + + N+ +R+
Sbjct: 295 TDAKPQYLADGATLKMLTGEDTIHADRKNKEPINFYNYA-KLSFAMNELPPMRDFSGGLK 353
Query: 625 RRYIVIPFDKPIANR-DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAK 683
RR +++ DK + A + ++G++ +SK D I +
Sbjct: 354 RRMMILEMDKVLTQEVKAKYPLDKIMSEVPGIFNRAMEGLRNALSK-RDFSISASMRSSV 412
Query: 684 EEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLK 743
E+ +G D +++D C++GE+ + +Y Y + + K ++ + T +
Sbjct: 413 EKWEKGNDVVAMFLEDECELGEDFKVPVRDVYPAYKFYCQ---DSGYKPLARNSFTQRMN 469
Query: 744 QKGFIGGIKREKIEKEWKSKRIIKGLKLKPAF 775
+ F + + + K+ R G ++K F
Sbjct: 470 ELNF----ENKNAKMGGKTVRCWIGFRIKGEF 497
>gi|225871340|ref|YP_002747287.1| phage DNA primase/helicase protein [Streptococcus equi subsp. equi
4047]
gi|225700744|emb|CAW95385.1| putative phage DNA primase/helicase protein [Streptococcus equi
subsp. equi 4047]
Length = 794
Score = 222 bits (566), Expect = 1e-55, Method: Composition-based stats.
Identities = 73/452 (16%), Positives = 161/452 (35%), Gaps = 24/452 (5%)
Query: 327 TADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFW 386
D ++W + D+ + A+ + V + D + + +
Sbjct: 364 VEDDRSWLEIDERG---EPEVNSYLLATQIIKEVPIYWDGLEFLRYDAKKGIWLPNAEEY 420
Query: 387 FNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLL-DSSSRFLGEQDGILDLETGQKV- 444
+ + + + +K + ++++ A + +S++ +S + +G+ DL
Sbjct: 421 LKSYISTKKLGKITKIRHISETVVAIKAQAFSSEVFTESDLNKIVLANGVYDLRDNSFKT 480
Query: 445 KPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFI 504
K EL+ S + + F + E +D+ G Q+ +
Sbjct: 481 KFDPELHARSSHPVVYDPEAACETFEGFLRETV-GAENIDFIFEWFGYNFYREYAIQKML 539
Query: 505 HIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVII 564
I G GG+GKSTL+N+++ G +MQ R + G L
Sbjct: 540 FIYGSGGTGKSTLINILREMIGADNYSAVTLQYLMQERFAKIG--------LYRKTANFD 591
Query: 565 SETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWW 624
++ + A +K +TG D + A + + N+ +R+
Sbjct: 592 TDAKPQYLADGATLKMLTGEDTIHADRKNKEPINFYNYA-KLSFAMNELPPMRDFSGGLK 650
Query: 625 RRYIVIPFDKPIANR-DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAK 683
RR +++ DK + A + ++G++ +SK D I +
Sbjct: 651 RRMMILEMDKVLTQEVKAKYPLDKIMSEVPGIFNRAMEGLRKALSK-RDFSISASMRSSV 709
Query: 684 EEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLK 743
E+ +G D +++D C++GE+ + +Y Y + + K ++ L+
Sbjct: 710 EKWEKGNDVVAMFLEDECELGEDFKVPVRDVYPAYKFYCQ---DSGYKPLAKNAFNHRLR 766
Query: 744 QKGFIGGIKREKIEKEWKSKRIIKGLKLKPAF 775
+ + + + ++ K + G KLK F
Sbjct: 767 ELSY----ENKNVKSGGKQAKNWVGFKLKSEF 794
>gi|119476604|ref|ZP_01616914.1| hypothetical protein GP2143_03208 [marine gamma proteobacterium
HTCC2143]
gi|119449860|gb|EAW31096.1| hypothetical protein GP2143_03208 [marine gamma proteobacterium
HTCC2143]
Length = 594
Score = 222 bits (566), Expect = 1e-55, Method: Composition-based stats.
Identities = 62/367 (16%), Positives = 128/367 (34%), Gaps = 30/367 (8%)
Query: 412 GSIFSITSDLLDSSSRFLGEQDGILDLETGQ--KVKPTKELYITKSTGTPFVEGEPSQEF 469
++ + + + +G + + K Y T + +
Sbjct: 228 KTMVHKEKHRFNQLNDGINTLNGTIRFIDNRWILTPHEKTEYRTSVIPVEYDPTAEAPRC 287
Query: 470 LDLVSGYFESEEVMD---YFTR-CVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF 525
+ F + +D + R +G LL F G G +GKS ++LI+
Sbjct: 288 MQFEREVFRDDPDIDDKIFLLRQAMGYTLLSSTPYPSFFIFEGSGANGKSVCLDLIRALC 347
Query: 526 GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGD 585
G + V + + M NR ++ G ++SE E + A+IK + G+
Sbjct: 348 GTENVSAVQMNQ-MANRFQR--------AQMNGKLANLVSELPEGGRLPDAEIKSDSSGE 398
Query: 586 CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASF 643
T + + P +T F N R+ A RR +I F++ + +D
Sbjct: 399 LTTVENKGRDPFEIIPF-YTMFFATNHLPHTRDLSPALQRRARIIRFNRTFSSGEQDPHL 457
Query: 644 AQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDI 703
+KL+ + L+ +K + G P+ AK++ +D ++++ C +
Sbjct: 458 IEKLKGEL-PGILNQALEALKHLFTDG-AFVEPQSSKDAKKDWLLQSDQVTQFVNESCVL 515
Query: 704 GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSK 763
+ +L ++Y + + ++ +T T L G + S
Sbjct: 516 NVDGRVSVDTLYRTYRMWATDSG--FKSLVTKKTFTQRLVISG--------VGSTKSGSV 565
Query: 764 RIIKGLK 770
R G++
Sbjct: 566 RYYSGVQ 572
>gi|21910978|ref|NP_665246.1| putative DNA primase/helicase - phage associated [Streptococcus
pyogenes MGAS315]
gi|28876472|ref|NP_795676.1| putative DNA primase/helicase [Streptococcus pyogenes phage 315.6]
gi|28895335|ref|NP_801685.1| DNA primase (phage associated) [Streptococcus pyogenes SSI-1]
gi|50913381|ref|YP_059353.1| virulence-associated protein E [Streptococcus pyogenes MGAS10394]
gi|21905186|gb|AAM80049.1| putative DNA primase/helicase - phage-associated [Streptococcus
pyogenes MGAS315]
gi|28810581|dbj|BAC63518.1| putative DNA primase (phage associated) [Streptococcus pyogenes
SSI-1]
gi|50902455|gb|AAT86170.1| virulence-associated protein E [Streptococcus pyogenes MGAS10394]
Length = 794
Score = 222 bits (565), Expect = 2e-55, Method: Composition-based stats.
Identities = 72/452 (15%), Positives = 161/452 (35%), Gaps = 24/452 (5%)
Query: 327 TADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFW 386
D ++W + D+ + A+ + V + D + + +
Sbjct: 364 VEDDRSWLEIDERG---EPEVNSYLLATQIIKEVPIYWDGLEFLRYDAKKGIWLPNAEEY 420
Query: 387 FNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLL-DSSSRFLGEQDGILDLETGQKV- 444
+ + + + +K + ++++ A + +S++ +S + +G+ DL
Sbjct: 421 LKSYISTKKLGKITKIRHISETIVAIKAQAFSSEVFTESDLNKIVLANGVYDLRDNSFKT 480
Query: 445 KPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFI 504
K E++ S + + F + E +D+ G Q+ +
Sbjct: 481 KFDPEVHARSSHPVVYDPEATCETFEGFLRETV-GAENIDFIFEWFGYNFYREYTIQKML 539
Query: 505 HIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVII 564
I G GG+GKSTL+N+++ G +MQ R + G L
Sbjct: 540 FIYGSGGTGKSTLINILREMIGADNYSAVTLQYLMQERFAKIG--------LYRKTANFD 591
Query: 565 SETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWW 624
++ + A +K +TG D + A + + N+ +R+
Sbjct: 592 TDAKPQYLADGATLKMLTGEDTIHADRKNKEPINFYNYA-KLSFAMNELPPMRDFSGGLK 650
Query: 625 RRYIVIPFDKPIANR-DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAK 683
RR +++ DK + A + ++G++ +SK D I +
Sbjct: 651 RRMMILEMDKVLTQEVKAKYPLDKIMSEVPGIFNRAMEGLRKALSK-RDFSISASMRSSV 709
Query: 684 EEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLK 743
E+ +G D +++D CD+ E+ + +Y Y + + K ++ + T +
Sbjct: 710 EKWEKGNDVVAMFLEDECDLSEDFKVPVRDVYPAYKFYCQ---DSGYKPLARNSFTQRMN 766
Query: 744 QKGFIGGIKREKIEKEWKSKRIIKGLKLKPAF 775
+ F + + + K+ R G ++K F
Sbjct: 767 ELNF----ENKNAKMGGKTVRCWIGFRIKGEF 794
>gi|183600772|ref|ZP_02962265.1| hypothetical protein PROSTU_04371 [Providencia stuartii ATCC 25827]
gi|188019677|gb|EDU57717.1| hypothetical protein PROSTU_04371 [Providencia stuartii ATCC 25827]
Length = 209
Score = 222 bits (565), Expect = 2e-55, Method: Composition-based stats.
Identities = 61/211 (28%), Positives = 102/211 (48%), Gaps = 7/211 (3%)
Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569
G +GKST + +I+ G+ Y + +M N+ +G N SL +L+G R+V+ +E E
Sbjct: 3 GSNGKSTFIQIIQSLMGS-YATQINSDVLMMNK--NSGGPNASLAKLLGKRLVVANELPE 59
Query: 570 NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIV 629
N ++ IK MTGGD + AR YG E + F+ I+ N + + WRR +
Sbjct: 60 NGRLDDTLIKSMTGGDIIVARQVYGKHELEFYSQFSLVIIGNHKPAIYDMSHGMWRRMCL 119
Query: 630 IPFDKPI--ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEER 687
IPF A D KL + W L GV+A+ ++GL +P + A +E R
Sbjct: 120 IPFAANFTAAQIDPELPVKLSRE-MQGILNWALAGVQAWHTEGLKRSLPAAVIAANDEYR 178
Query: 688 QGTDTYQAWIDDCCDIGENLWEESHSLAKSY 718
Q +D ++ + C + + + + L ++
Sbjct: 179 QESDLIGEFL-EGCRLEPDAYTAASDLYSAF 208
>gi|313158768|gb|EFR58155.1| phage/plasmid primase, P4 family, C-terminal domain protein
[Alistipes sp. HGB5]
Length = 493
Score = 221 bits (564), Expect = 3e-55, Method: Composition-based stats.
Identities = 58/333 (17%), Positives = 123/333 (36%), Gaps = 23/333 (6%)
Query: 423 DSSSRFLGEQDGILDLETG--QKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESE 480
+S+ + +G ++ G + K K+ ++T + + F +S E
Sbjct: 153 NSNVVLINLLNGTYEIRNGQGKLRKFCKDDFLTHQLPFKYNPDAAAPLFDKYLSKVQPDE 212
Query: 481 EVMDYFTRCVGMAL--LGGN--KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEAS 536
+G G K ++ + + G G +GKS ++ G + VI
Sbjct: 213 SARKVLAEYIGYLFIKTGNTILKEEKALMLYGGGANGKSVFFEIVNALLGAENVICHSLQ 272
Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNT 596
D+ +L + SE N ++ ++ KQ+ G+ ++ARL YG
Sbjct: 273 DLTDGSGYYR-------AQLANKLVNYASEI--NGKLESSIFKQLVSGEPVSARLPYGKP 323
Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLE 654
+ + + N+ DA++RR++++PFD I + ++
Sbjct: 324 FHLTHYA-RLIFNCNELPRGNEFTDAYFRRFLIVPFDVTIPPEEQIKDLHSQIIENELAG 382
Query: 655 AKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE-NLWEESHS 713
W L+G+ + + +A E+ R +D+ + +++D + N+ +
Sbjct: 383 VFNWVLRGLARLLKQN-GFTECIAARRAVEDYRLQSDSLRQFLNDERYKSDVNVKTKIVD 441
Query: 714 LAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746
L Y Y ++ Y ++ LK G
Sbjct: 442 LYIEYKYYCQENGFY---HLTKPNFIKRLKSYG 471
>gi|91787211|ref|YP_548163.1| Phage/plasmid primase P4-like protein [Polaromonas sp. JS666]
gi|91696436|gb|ABE43265.1| Phage/plasmid primase P4-like protein [Polaromonas sp. JS666]
Length = 771
Score = 221 bits (563), Expect = 4e-55, Method: Composition-based stats.
Identities = 105/804 (13%), Positives = 237/804 (29%), Gaps = 113/804 (14%)
Query: 12 QAIHNGFKLIPLRLGDKRPQRLGK--WEEQLLSSEKIDKLP--ACGFGFVCGVGEQPLYA 67
+ GF L+P+ G K P+ G E + +SE+ +C G P A
Sbjct: 27 AYLAAGFALVPIPHGLKGPRAAGWNLRENAITTSEQAQAQLNGSCNIGLAHAYSNPPTCA 86
Query: 68 FDIDSKD---EKTANTFKDTFEILHGTPIVRI--GQKPKILIPFRMNKE--------GIK 114
DID+ A D +L+ VRI G+ + + +R+ + G
Sbjct: 87 LDIDNMSLARPWFAERGIDLDALLNAPGAVRIHSGRPGRAKLLYRLPQPLPSCTLPWGEL 146
Query: 115 KKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTW----------TTPPHRFKVEDTPL 164
+ + T Q + + HP T + Y W P +
Sbjct: 147 RCASGNGTTW--------QDVLPPSTHPDTGRPYAWIGDIANIQPIPDAPLSAWRQQLAA 198
Query: 165 LSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNG 224
++ + ++ P + P + N + L
Sbjct: 199 KGRKEPHAVPCAQRDDLPPRFAELLHADPKLRTRWDGETGGLNDASRSGL---------- 248
Query: 225 SHDEWIPVVMAVHHETRGSSKGKEI---ARRWSKQGSTYDEENFNYKWDTFDFEEIGDTA 281
D + +M + + A + Q D + + +
Sbjct: 249 --DMSLASLMVMRG-FNDHEIATALRAFAHGKAAQDGRGDHDYTGPLLAKLRAQRTLSRS 305
Query: 282 KKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNV 341
+ T L+A +F+ A+ ++ + W
Sbjct: 306 EPAWTA------------HRLVAEKFTAEDGAALLLHWRGDFY-------GW------RA 340
Query: 342 YIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSK 401
W ++ ++ + KN P +
Sbjct: 341 GAWRSMAP----------ADLEAVIYAYLGGAQYLGKNGAEPFGPNRARVGDVMAALRAT 390
Query: 402 AKSTAQSLEAGSIFSITSDLLDSS-SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPF 460
A + + D L +GI+ L + +L+ T +
Sbjct: 391 AHLASHHA---PPCWLNEREGDPDARDLLVMANGIMHLPSRTLRPHDAQLFTTTGLPFAY 447
Query: 461 VEGEPSQ-EFLDLVSGYFESE-EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLM 518
+L + + + E + G L + Q+ + + G +GK T +
Sbjct: 448 DANAEPPMAWLRFLRELWPDDAESRETLQEFFGYLLTADSSRQKILMVVGPKRAGKGTAI 507
Query: 519 NLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKI 578
+++ G + + + N L L+ R+ +IS+ + ++ +
Sbjct: 508 KVMRALLGEANCVGPTLDSL---------RTNFGLQPLIEKRLAVISDARLSGRVDQQAL 558
Query: 579 KQ----MTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK 634
+ ++G D +T + + ++ ++ N+ + + A R+IV+ +
Sbjct: 559 AERLLAVSGEDTLTVDRKHISAWT-GRLGVRFVLLTNELPRIADSSGALASRFIVLRLTR 617
Query: 635 P-IANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTY 693
+ + D A +L + W L G++ +G P + E
Sbjct: 618 SWLGSEDLGLADRLLREL-PAILNWSLNGLERLCQRG-QFRQPAAASELVRELEDLGSPV 675
Query: 694 QAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKR 753
A++ + C + E L +++ + + + T +L+ + ++
Sbjct: 676 GAFLRESCVVTPGAEVERGRLFQAWRLWCQAHG--WEHHGTEATFGRDLRAA--LPDLQT 731
Query: 754 EKIEKEWKSKRIIKGLKLKPAFES 777
E + +R +G+ L +++
Sbjct: 732 HHPRVEGRQRRFYRGVGLADSWQG 755
>gi|294338996|emb|CAZ87341.1| putative Phage/plasmid primase P4, C-terminal [Thiomonas sp. 3As]
gi|294341823|emb|CAZ90252.1| putative Phage/plasmid primase P4, C-terminal [Thiomonas sp. 3As]
Length = 426
Score = 220 bits (561), Expect = 7e-55, Method: Composition-based stats.
Identities = 72/416 (17%), Positives = 136/416 (32%), Gaps = 33/416 (7%)
Query: 371 EEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLG 430
P D + W EN++ A SL + + +T + +
Sbjct: 36 WSPIDEEAAERDAYAWLVAQDPAWASAENARKAVRAASLFSPRLPKLT------DAVVVP 89
Query: 431 EQDGILDLETGQK--VKPTKELYITKSTGTPFVEGEPSQE-FLDLVSGYFESEEVMDYFT 487
Q G + L+ + L +T P+ F V V
Sbjct: 90 TQSGYVHLDGAELVLKPADPSLGLTHCLDCPYAPEGVMPAHFAAFVQRVLPDPSVRARVQ 149
Query: 488 RCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAG 547
+G LL + QR G G +GK L N+++ G+ + +
Sbjct: 150 EYIGYTLLADARYQRAQFWLGEGANGKGVLANVVQALHGHIAAMALDQL----------- 198
Query: 548 KANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPF 607
A L L+G+ +V + E I+ ++K M G+ + Y S
Sbjct: 199 -AGFHLSVLVGASLVYVDEVPR-KPIDEQRLKSMIAGERIPVDRKYREPLSIHVRG-KWL 255
Query: 608 IVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKA 665
++ N + + +WRR+ V+PF I RD AQ + + +W L G+
Sbjct: 256 VLGNHLPAISDHSSGFWRRWDVVPFSVTIPERERDPLLAQTIVREELSGVLRWALDGLVR 315
Query: 666 YI-SKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD-CCDIGENLWEESHSLAKSYSEYRE 723
G D +P +E + T++ AW++D + + + Y +
Sbjct: 316 LQTRGGFDPVMPAAMQAMLQEAKADTNSVVAWVEDLGVKLQLACDVPKERVFEHYRNWCA 375
Query: 724 QELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVD 779
+S +++ F + + +R + +KL + +D
Sbjct: 376 VN---AMHEVSVVQFWKRVREH-FRELTEAR--IRTGPGQRRVCNVKLSASTTDLD 425
>gi|139473887|ref|YP_001128603.1| phage DNA primase/helicase protein [Streptococcus pyogenes str.
Manfredo]
gi|209559299|ref|YP_002285771.1| Putative DNA primase/helicase-phage associated [Streptococcus phage
NZ131.2]
gi|134272134|emb|CAM30379.1| putative phage DNA primase/helicase protein [Streptococcus pyogenes
str. Manfredo]
gi|209540500|gb|ACI61076.1| Putative DNA primase/helicase-phage associated [Streptococcus phage
NZ131.2]
Length = 794
Score = 220 bits (561), Expect = 7e-55, Method: Composition-based stats.
Identities = 73/452 (16%), Positives = 161/452 (35%), Gaps = 24/452 (5%)
Query: 327 TADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFW 386
D ++W + D+ + A+ + V + D + + +
Sbjct: 364 VEDDRSWLEIDERG---EPEVNSYLLATQIIKEVPIYWDGLEFLRYDAKKGIWLPNAEEY 420
Query: 387 FNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLL-DSSSRFLGEQDGILDLETGQKV- 444
+ + + + +K + ++++ A + +S++ +S + +G+ DL
Sbjct: 421 LKSYISTKKLGKITKIRHISETVVAIKAQAFSSEVFTESDLNKIVLANGVYDLRDNSFKT 480
Query: 445 KPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFI 504
K EL+ S + + F + E +D+ G Q+ +
Sbjct: 481 KFDPELHARSSHPVVYDPEAACETFEGFLRETV-GAENIDFIFEWFGYNFYREYAIQKML 539
Query: 505 HIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVII 564
I G GG+GKSTL+N+++ G +MQ R + G L
Sbjct: 540 FIYGSGGTGKSTLINILREMIGADNYSAVTLQYLMQERFAKIG--------LYRKTANFD 591
Query: 565 SETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWW 624
++ + A +K +TG D + A + + N+ +R+
Sbjct: 592 TDAKPQYLADGATLKMLTGEDTIHADRKNKEPINFYNYA-KLSFAMNELPPMRDFSGGLK 650
Query: 625 RRYIVIPFDKPIANR-DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAK 683
RR +++ DK + A + ++G++ +SK D I +
Sbjct: 651 RRMMILEMDKVLTQEVKAKYPLDKIMGEVPGIFNRAMEGLRKALSK-RDFSISASMGSSV 709
Query: 684 EEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLK 743
E+ +G D +++D C++GE+ + +Y Y + + K ++ L+
Sbjct: 710 EKWEKGNDVVAMFLEDECELGEDFKVPVRDVYPAYKFYCQ---DSGYKPLAKNAFNHRLR 766
Query: 744 QKGFIGGIKREKIEKEWKSKRIIKGLKLKPAF 775
+ + + + ++ K + G KLK F
Sbjct: 767 ELNY----ENKNVKSGGKQAKNWVGFKLKSEF 794
>gi|307317147|ref|ZP_07596588.1| Primase 2 [Sinorhizobium meliloti AK83]
gi|306897235|gb|EFN27980.1| Primase 2 [Sinorhizobium meliloti AK83]
Length = 806
Score = 220 bits (560), Expect = 9e-55, Method: Composition-based stats.
Identities = 108/674 (16%), Positives = 213/674 (31%), Gaps = 92/674 (13%)
Query: 8 EQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACG------FGFVCGVG 61
+Q ++ GF + L KRP + +L+ E++ K G G +G
Sbjct: 3 DQIERLARAGFAIHWLHPKQKRPIGENWSTKPVLTLEQLKKTYKDGNNVGVRLGKWSKIG 62
Query: 62 EQPLYAFDIDSKDEKTANTFK----DTFEILHGTPIVRIGQ------------KPKILIP 105
L+ D+D +D K A+ + + F + P V G KP
Sbjct: 63 NDYLHVIDLDIRDPKLADEARQKLTELFPVWKTYPTVISGSGGESRHFYILSDKPFSPKK 122
Query: 106 FRMNKEGIKKKKTTESTQGHLDILGCGQYF-VAYNIHPKTKKEYTWTTPPHRFKVEDT-- 162
++E I+ + +D+ G G+ + +IHP T K Y W TP F +D
Sbjct: 123 LAHSREKIQTADGKWHWRWEIDLFGTGKQVAMPPSIHPDTGKPYRWQTP---FDFDDLDL 179
Query: 163 ---PLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGE 219
P++ + + + + ++S + EI L
Sbjct: 180 GLGPMVGSDVLAKMLDMDADDERAAADPERS----------KPLGLSLDEIREVLDDLPR 229
Query: 220 EFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGD 279
+++ D W+ V M++HHET GS G ++ +SK +D+ + W +F +
Sbjct: 230 DYWRDDRDGWLTVGMSLHHETGGSDHGYKLWLDFSKDSEKFDKSDQKRVWKSFKGSQKPV 289
Query: 280 TAKKRSTFT------SLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAW 333
T F + + L A ++ + + + DTK
Sbjct: 290 RMATLVTAAREARLDEEFENLDDDVTDDLDAPEQDTEFDDILGTEHG--------DTKRA 341
Query: 334 YKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR 393
K K+ L + + + + + + N +
Sbjct: 342 KKLKKSET---EADLGHVPPKVRRMNRKHAVAFVNGKTVIVTEHMDGTTAYGTPNELHNW 398
Query: 394 QNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYIT 453
+ + K+T +A + +GI+ GQ+ +
Sbjct: 399 YENDRVATEKATEPVSKAWMRHKLRRQY----------PNGIV-FAPGQERDGYFNHW-- 445
Query: 454 KSTGTPFVEGEPSQEFLDLVSGYF--ESEEVMDYFTRCVGMALLGGNKAQ--RFIHIRGV 509
K + LD + +EE Y ++ + + +RG
Sbjct: 446 KGFAVEPDSEGSCRLILDHLKNVICSGNEEYYRYALGWFAH-MIQRPFEKPGVAMVLRGK 504
Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569
GK T+ + I F + +V+ A ++ A + L+ +
Sbjct: 505 KRIGKDTIADYIGGLFPHHHVVIANQEQLVGKF--NAHQEKCLLLHVQEGFWA------- 555
Query: 570 NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNP-DDAWWRRYI 628
++ +K + + + N + + F+ N+ V D+ RY
Sbjct: 556 GNKNAEGSLKYLITSEKVFIEPKGLNGFHVD-SYLRLFMSSNEDWVVPATADEG---RYF 611
Query: 629 VIPFDKPIANRDAS 642
V+ D +D
Sbjct: 612 VL--DVSPHRKDDH 623
>gi|281354915|ref|ZP_06241409.1| phage/plasmid primase, P4 family [Victivallis vadensis ATCC
BAA-548]
gi|281317795|gb|EFB01815.1| phage/plasmid primase, P4 family [Victivallis vadensis ATCC
BAA-548]
Length = 474
Score = 220 bits (560), Expect = 9e-55, Method: Composition-based stats.
Identities = 83/473 (17%), Positives = 171/473 (36%), Gaps = 52/473 (10%)
Query: 310 AYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDL 369
+ A++ + L+ D K ++ D++ + + + ++ + +
Sbjct: 41 RFFAALYCQ--ARNLLFDKDEKKFFLYDQSTGLWQEQSSNAQLCDVAQLIMQYVPNDYIR 98
Query: 370 SEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFL 429
++ + QN ++N +
Sbjct: 99 LSTSRMISQIQSFIKGLAEKRGAFQNKKKN----------------------------VI 130
Query: 430 GEQDGILDLETG---QKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYF 486
+GIL+ +G + P E Y + + +FLD + G EE +
Sbjct: 131 HVANGILEFISGGGWELRNPQPEDYSRNRSEIIYNPESQCPQFLDQLLGEAMPEEDISLL 190
Query: 487 TRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEA 546
+ G+ LLG N +Q+ + + G G GKSTL+N+++ G + Q
Sbjct: 191 QQYAGLVLLGYNLSQKVLLLTGSAGGGKSTLVNILEGLIGRHNCCELRTEHLDQ------ 244
Query: 547 GKANPSLIRLMGSRIVIISETNEN--DEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604
+ R +G ++ + + + AAKIK +TG D +TA +T + +F
Sbjct: 245 ---RFEIARFVGKTLLTAKDVKSSFLNTPGAAKIKALTGKDTLTADFKGVSTGVDVIGNF 301
Query: 605 TPFIVPNKHLFV--RNPDDAWWRRYIVIPFDKPI-ANRDASFAQKLETKYTLEAKKWFLK 661
I N L V +AW RR + I ++ P + A F +K+ T+ W L+
Sbjct: 302 NVVITANTELHVALDGDKEAWRRRLLWIKYELPPTSTPIADFDEKILTEEGAGVLNWALE 361
Query: 662 GVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEY 721
G + + +G + + + ++ +DT ++ C + L S L + Y
Sbjct: 362 GARKLLVEGGKIRMTAKQTERVDKLLLESDTVGQFVHKCIVLSPGLNATSEELWSQFYHY 421
Query: 722 REQELNYDRKRISTRTVTLNLKQKGFIG--GIKREKIEKEWKSKRIIKGLKLK 772
+ + S + + LK + +I + KR +G++++
Sbjct: 422 CDYQG---LTPGSRKQFFIELKNAMLTKFHLSQSHRISRGNTLKRGYEGIRIR 471
>gi|169830164|ref|YP_001700322.1| primase [Lysinibacillus sphaericus C3-41]
gi|168994652|gb|ACA42192.1| primase, putative [Lysinibacillus sphaericus C3-41]
Length = 373
Score = 219 bits (559), Expect = 1e-54, Method: Composition-based stats.
Identities = 54/328 (16%), Positives = 121/328 (36%), Gaps = 15/328 (4%)
Query: 421 LLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESE 480
L+ S + Q+G+ +L+T + K T + +FL + ++
Sbjct: 30 ELNIYSDLVNLQNGMYNLKTHKLEKHHPRYLSTVRIPIIYNRSAKCPKFLHFMDEITNND 89
Query: 481 -EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539
+++ +G + K+++ ++ G G +GKS L NL+K GN+ V +
Sbjct: 90 SDLIKVHQELIGYWITTEIKSEKAVYYYGRGANGKSVLANLVKILVGNENVSTIPLAQFN 149
Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETN-ENDEINAAKIKQMTGGDCMTARLNYGNTYS 598
N E +M + + +E ++N K + GD +T + + +
Sbjct: 150 SNFGLEG---------IMNKTLNVAAENEMNGLKLNTETFKAIVSGDGITINIKFKSPIV 200
Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEAK 656
+ + N+ + ++RR I+IPF + R+ Q+L+ +
Sbjct: 201 NYKSKCRLLFLGNELPDTSDLTQGYFRRLIIIPFKRTFKEEERNRDILQELQEEL-DGIF 259
Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAK 716
W ++G+ + + + + + + + + NL + + K
Sbjct: 260 NWAIEGLVRLNQLEFNFTKADAIESEMAKYQLMQNPVLNFFESTVVLSGNLKIKRSEIYK 319
Query: 717 SYSEYREQELNYDRKRISTRTVTLNLKQ 744
Y E+ E+ Y+ R + R +
Sbjct: 320 LYLEWIEKNGLYNSVR-NNRQFKKEFEN 346
>gi|313633561|gb|EFS00357.1| gp60 [Listeria seeligeri FSL N1-067]
Length = 217
Score = 219 bits (558), Expect = 1e-54, Method: Composition-based stats.
Identities = 61/229 (26%), Positives = 103/229 (44%), Gaps = 18/229 (7%)
Query: 552 SLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPN 611
+ RL G+R V +E N+ ++ +KQ+TGGD +TAR Y + + +P F ++ N
Sbjct: 1 DIARLHGARFVTTTEPNDGVRLDEGLVKQLTGGDKVTARHLYKDEFEFTP-EFKIWMATN 59
Query: 612 KHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAKKWFLKGVKAYISK 669
+R DD WRR ++PF I + D KL ++ T W ++G + +
Sbjct: 60 HKPIIRGRDDGIWRRLHLVPFTVKIPDEKVDKQLKYKLRSELT-GILNWAVEGFLKWQRE 118
Query: 670 GLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYD 729
GL +P+ A E D A+I+DCCD+ E + + ++Y E+ + Y
Sbjct: 119 GLG--MPKAVENASSEYXXXXDVITAFIEDCCDVREGEKVNAKKMYETYREWAKDNGQY- 175
Query: 730 RKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESV 778
+S+ + G+K EK K K G+ L + S+
Sbjct: 176 --LMSSTKFGKEM-------GLKFEK--KRSKKGYKYTGVCLNDEYFSL 213
>gi|90962627|ref|YP_536543.1| DNA primase [Lactobacillus phage Sal3]
gi|90821821|gb|ABE00460.1| DNA primase [Lactobacillus phage Sal3]
Length = 464
Score = 219 bits (557), Expect = 2e-54, Method: Composition-based stats.
Identities = 78/374 (20%), Positives = 142/374 (37%), Gaps = 21/374 (5%)
Query: 404 STAQSLEAGSIFSITSDLLDS-SSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFV- 461
T + + +I S+ +D+ + ++G+ + T + E YI
Sbjct: 106 DTRKYIMNKAIIKQASETIDNVDPFKVHFKNGVYNFITDKLEPNKPENYIFHGRNYNLDT 165
Query: 462 EGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGN-KAQRFIHIRGVGGSGKSTLMNL 520
P+ + +S E + Y +G K Q F + GG+GKST N
Sbjct: 166 NNTPTPLTDNWLSESVEDAK--QYIMEFIGYIFYRSYEKIQNFTILLAGGGNGKSTFFNW 223
Query: 521 IKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQ 580
+ A G + N D+ N+ + RL + ++ ++ + A +K
Sbjct: 224 LSDAVGIDNISNVSLQDLTDNQR------RFTTSRLYQKNMNYYADISKGLINDPALLKS 277
Query: 581 MTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD 640
+TG D + + + P + F N+ ++ + RR +++PF+ I + +
Sbjct: 278 ITGDDALDVENKGKDQRTIKPFA-KLFFGANELPPFKDTSKGFGRRPMIVPFEA-IEDFN 335
Query: 641 ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDC 700
F K LK K + +G + PE +K + E D +IDD
Sbjct: 336 ERFKMVEIKKEIPAFIYKCLKAFKKALERGYLSETPE-MIKLRNEWLGSNDIVGLFIDDY 394
Query: 701 CDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEW 760
C++ +N + L SY +Y L + +S + LK+ R K+
Sbjct: 395 CELNKNYNIKKVYLYDSYKQYC---LENGYRAMSNQKFKQELKRFNVFDRYAR----KDG 447
Query: 761 KSKRIIKGLKLKPA 774
K RI +G+KLKP
Sbjct: 448 KMMRIFEGIKLKPT 461
>gi|300215227|gb|ADJ79643.1| DNA primase [Lactobacillus salivarius CECT 5713]
Length = 464
Score = 218 bits (556), Expect = 3e-54, Method: Composition-based stats.
Identities = 77/374 (20%), Positives = 141/374 (37%), Gaps = 21/374 (5%)
Query: 404 STAQSLEAGSIFSITSDLLDS-SSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFV- 461
T + + +I S+ +D+ + ++G+ + T + E YI
Sbjct: 106 DTRKYIMNKAIIKQASETIDNVDPFKVHFKNGVYNFITDKLEPNKPENYIFHGRNYNLDT 165
Query: 462 EGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGN-KAQRFIHIRGVGGSGKSTLMNL 520
P+ + +S + Y +G K Q F + GG+GKST N
Sbjct: 166 SNTPTPLTDNWLSESVGDAK--KYIMEFIGYIFYRSYEKIQNFTILLAGGGNGKSTFFNW 223
Query: 521 IKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQ 580
+ A G + N D+ N+ + RL + ++ ++ + A +K
Sbjct: 224 LSDAVGIDNISNVSLQDLTDNQR------RFTTSRLYQKNMNYYADISKGLINDPALLKS 277
Query: 581 MTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD 640
+TG D + + + P + F N+ ++ + RR +++PF+ I + +
Sbjct: 278 ITGDDALDVENKGKDQRTIKPFA-KLFFGANELPPFKDTSKGFGRRPMIVPFEA-IEDFN 335
Query: 641 ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDC 700
F K LK K + +G + PE +K + E D +IDD
Sbjct: 336 ERFKMVEIKKEIPAFIYKCLKAFKKALERGYLSETPE-MIKLRNEWLGSNDIVGLFIDDY 394
Query: 701 CDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEW 760
C++ +N + L SY +Y L + +S + LK+ R K+
Sbjct: 395 CELNKNYNIKKVYLYDSYKQYC---LENGYRAMSNQKFKQELKRFNVFDRYAR----KDG 447
Query: 761 KSKRIIKGLKLKPA 774
K RI +G+KLKP
Sbjct: 448 KMMRIFEGIKLKPT 461
>gi|298674413|ref|YP_003726163.1| phage/plasmid primase [Methanohalobium evestigatum Z-7303]
gi|298287401|gb|ADI73367.1| phage/plasmid primase, P4 family [Methanohalobium evestigatum
Z-7303]
Length = 545
Score = 218 bits (555), Expect = 3e-54, Method: Composition-based stats.
Identities = 66/406 (16%), Positives = 148/406 (36%), Gaps = 37/406 (9%)
Query: 373 PEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQ 432
P ++ SK + + YR+ S K ++ ++ + + ++++ + +
Sbjct: 169 PNGIDEISKQVQDKLDEHYRK------SYKKEVIDYIKTKAL--VDRESINNNKYIINLK 220
Query: 433 DGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGM 492
+G+ D+ G+ + + + T + +S +S++ +G
Sbjct: 221 NGLYDVSKGKFLPHSPKYMSTIQLPVYYKPEAECPNIEKFLSDVTKSDKDKQLIFEWIGY 280
Query: 493 ALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS 552
L+ + Q+F+ G GKS L+ LI GN V ++ + S
Sbjct: 281 TLIPNTRLQKFVMFYGPRDGGKSVLIKLITCLLGNYNVSGESLQNL--------ENDDFS 332
Query: 553 LIRLMGSRIVIISETNENDEINAAKIKQMTGGD-CMTARLNYGNTYSESPASFTPFIVPN 611
+ L G + + + + IK MTG D + + Y ++ + N
Sbjct: 333 IANLEGKLLNAFPDLPDYGFYQNSVIKIMTGDDGYIRVNIKKVQPY-KTTITARLMFSTN 391
Query: 612 KHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLET-KYTLEAKKWFLKGVKAYIS 668
++NPD+A+++R ++I F ++D + KL T + + ++ +
Sbjct: 392 NLPVIKNPDEAFFKRLMLIEFPNTFQGDSKDVNLIDKLTTSEELSGLLNKAIAALERLLK 451
Query: 669 KG---LDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQE 725
G D++ L+ E ++ ++ + D+ C N + + +Y E+ E+E
Sbjct: 452 NGEFSYDLNP----LENMELYQKLSNPVAKFADE-CVGESNEYTFKVDMYNAYVEWCEKE 506
Query: 726 LNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771
D + K G+ R+ G+ L
Sbjct: 507 ---DIVPLKKNEFGKQFKNLGY-----RDSRLNTGDRSYCWDGVSL 544
>gi|313633608|gb|EFS00380.1| gp60 [Listeria seeligeri FSL N1-067]
Length = 217
Score = 218 bits (554), Expect = 4e-54, Method: Composition-based stats.
Identities = 53/193 (27%), Positives = 93/193 (48%), Gaps = 9/193 (4%)
Query: 552 SLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPN 611
+ RL G+R V +E NE ++ +KQ+TGGD +TAR Y + + +P F ++ N
Sbjct: 1 DIARLHGARFVTTTEPNEGVRLDEGLVKQLTGGDKVTARHLYKDEFEFTP-EFKIWMATN 59
Query: 612 KHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAKKWFLKGVKAYISK 669
+R DD WRR ++PF I + D KL ++ T W ++G + +
Sbjct: 60 HKPIIRGRDDGIWRRLHLVPFTVKIPDEKVDKQLKYKLRSELT-GILNWAVEGFLKWQRE 118
Query: 670 GLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYD 729
GL +P+V A E + D A+I+DCCD+ E + + ++Y ++ ++ Y
Sbjct: 119 GLG--MPKVVENASSEYKXXXDVITAFIEDCCDVREGEKVNAKKMYETYRDWAKENGQY- 175
Query: 730 RKRISTRTVTLNL 742
+S+ +
Sbjct: 176 --LMSSTKFGKEI 186
>gi|299536247|ref|ZP_07049560.1| hypothetical protein BFZC1_09515 [Lysinibacillus fusiformis ZC1]
gi|298728233|gb|EFI68795.1| hypothetical protein BFZC1_09515 [Lysinibacillus fusiformis ZC1]
Length = 599
Score = 216 bits (549), Expect = 2e-53, Method: Composition-based stats.
Identities = 69/377 (18%), Positives = 136/377 (36%), Gaps = 24/377 (6%)
Query: 409 LEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPF--VEGEPS 466
+ A + +LL F+ + I++++ + + T +
Sbjct: 240 IMAKDEMKVNEELLVPRKSFVAFSNCIINIKDFSAHSHDPDYFFTSVLNAEYPLRSIPKG 299
Query: 467 QEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF 525
F +S + + G + + ++ GV SGKS ++ L+++
Sbjct: 300 PVFESFISQITGGDQRLYMRLQELFGYVISEIRDVKVIPYLVGVKDSGKSIILRLLEHLV 359
Query: 526 GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGD 585
G + N S++ Q L +L ++ ET+E K+++GGD
Sbjct: 360 GPNFFTNLSFSELNQQ---------SFLCQLFEKKLNTCGETSEIALNRLDNFKKLSGGD 410
Query: 586 CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD--DAWWRRYIVIPFDKPIA--NRDA 641
+ AR YG + N ++ D +A+ R ++ PF+ + +D
Sbjct: 411 YVMARYLYGQAFKFI-NKAALIFAGNHLPTIKGIDKSNAFSERLVIFPFNHQVPKEEQDI 469
Query: 642 SFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCC 701
KL K T W L G++ +I E K E + T++ ++I CC
Sbjct: 470 HLFDKLM-KETSYIAHWALIGLQRWIDNNYQFTTCEQIEKMAREYSEQTNSIDSFIKSCC 528
Query: 702 DIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWK 761
+ + + L +Y +Y +Y S+R N+K I + + + +
Sbjct: 529 YMNPDSKTHNDVLETAYKKYCR---SYGMIEESSRMFHKNMKT---ITNLTYSRFRLKNE 582
Query: 762 SKRIIKGLKLKPAFESV 778
+K G+ LK V
Sbjct: 583 NKYGYIGIGLKDTTYEV 599
>gi|168057313|ref|XP_001780660.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162667928|gb|EDQ54546.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 585
Score = 215 bits (548), Expect = 2e-53, Method: Composition-based stats.
Identities = 86/429 (20%), Positives = 161/429 (37%), Gaps = 64/429 (14%)
Query: 313 KAMFSIYKKGHFL---------YTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVS-M 362
+F + F+ Y DTK W L AS+M +++ M
Sbjct: 162 SKIFCVIYDDKFVCSNFDKITIYFFDTKRW-------------ALKSSKASMMREILTGM 208
Query: 363 KEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLL 422
+ D+ E + + + R+ + + E +LL
Sbjct: 209 YRFIADVCESYMKTIEPAIKIIDFIQLSDNRRKMMYTCAGMLYKEGFE---------ELL 259
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVE----GEPSQEFLDLVSGYFE 478
DS +G + G+ D + + + YIT ST PFV E + E L+L++ F
Sbjct: 260 DSRRNVIGMKGGVYDFIEDRFRRMESDDYITLSTRIPFVPLDYNSEATNEVLNLLAKVFP 319
Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538
+E++ YF R + L G N + F G G +GK+ +++L++ AFG+ Y I S +
Sbjct: 320 NEDIRRYFMRFISSCLEGQNANKIFSIWSGSGDNGKTVMVSLVEGAFGD-YTIKMPTSLL 378
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598
M R ++ A L L I ++ E +E D++N +K++TG D + R Y +
Sbjct: 379 MGKRV-QSSAATLELAMLKERLIALVQEPDEGDKLNLGIMKELTGNDSLYIRGLYEEG-T 436
Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN------RDASFAQKLETKYT 652
P + ++ N+ ++ I + +D +F+ K+
Sbjct: 437 IIPQTTKFVLIANRIPQ----------------MNRTIHDLLTTHLKDINFSNKIPL-LA 479
Query: 653 LEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESH 712
+ ++ K Y++ GL + P E D + ++ +
Sbjct: 480 PVFMRLVIEEYKQYLTYGL--EEPNEVKDCIETFHVSNDIFGQFLSANVEKNSKSIVAIK 537
Query: 713 SLAKSYSEY 721
L +Y +
Sbjct: 538 ELYDTYKYW 546
>gi|254463719|ref|ZP_05077130.1| Primase C terminal 2 family [Rhodobacterales bacterium Y4I]
gi|206684627|gb|EDZ45109.1| Primase C terminal 2 family [Rhodobacterales bacterium Y4I]
Length = 890
Score = 215 bits (547), Expect = 2e-53, Method: Composition-based stats.
Identities = 70/287 (24%), Positives = 124/287 (43%), Gaps = 35/287 (12%)
Query: 12 QAIHNGFKLIP-------LRLGDKRPQRLGKWEEQLLSSEK--IDKL-----PACGFGFV 57
+ + G++ +P ++ KRP G WE S+++ I + G V
Sbjct: 39 KLLRGGYRPVPVLGAHVAMKAAGKRPMMKG-WETVCASADETEITRWTKAQRNCTNTGLV 97
Query: 58 CGVGEQPLYAFDIDSKDEKTANTFK-DTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKK 116
CG L DID D A+ E+L +P+ RIG+ PKIL+ FR + K +
Sbjct: 98 CG----DLIGVDIDVLDRDHAHRLTFIATEMLGMSPLSRIGRAPKILLAFRTDAPFDKVQ 153
Query: 117 KTT----ESTQGHLDILGCGQYFVAYNIHPKTKKEYTWT-TPPHRFKVEDTPLLSEEDVE 171
+ + T +++L GQ FV + IHP TK Y W P + + P++S++
Sbjct: 154 TSEFHMLDGTVARVEVLATGQQFVGFGIHPDTKAPYHWPECSPLDVSLHELPVVSQDRCA 213
Query: 172 YLFK----FFQEITVPLVKDKKSI-IPSKTWTNNNNRQYTNRE-ITAFLSCFGEEFYNGS 225
+F+++ D++ I + ++ +RE I ++ +
Sbjct: 214 AFISAAEGYFRKVGGQTTSDRREIDREGRKAAGLKQKEAPSRELIEEAVAHISND--ELP 271
Query: 226 HDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTF 272
+D+WI V +A++ S G+++ WS + S D KWD+F
Sbjct: 272 YDDWIKVGLALYAAL--GSDGRDLWETWSAEASKNDPAYSAEKWDSF 316
>gi|126660109|ref|ZP_01731229.1| hypothetical protein CY0110_30895 [Cyanothece sp. CCY0110]
gi|126618629|gb|EAZ89378.1| hypothetical protein CY0110_30895 [Cyanothece sp. CCY0110]
Length = 1031
Score = 214 bits (544), Expect = 6e-53, Method: Composition-based stats.
Identities = 95/512 (18%), Positives = 171/512 (33%), Gaps = 65/512 (12%)
Query: 310 AYNKAMFSIY----KKGHFLYTADTKAWYKKDKNNVYIWSL-TLDKITASIMNFLVSMKE 364
+N+ Y K +Y TK WY + IW L T +++ +M L + +
Sbjct: 319 KWNEKRVCEYLASLYKDRLIYEGTTKDWYLYNAEKEGIWDLITKERLEQRLMLELDGLVD 378
Query: 365 DVFDLSEEPED--------NNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFS 416
+S++ + N S+ + + + A +
Sbjct: 379 KAETISQQIQTAISAVKGSNRDRSQKSELIEQLKAQIPKISDYKFTFVEAIGKRLSRVLL 438
Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY 476
+ +S + ++G+LDLET + + Y+T + +
Sbjct: 439 VNEMSTNSQKGLIPFRNGVLDLETRELWPHSPTNYLTWCLPYDYNPLASCNPIKQWLLEM 498
Query: 477 FESEEVMDYFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535
E +E + R + G Q+F+ + G GGSGKSTL L G + V +
Sbjct: 499 MEGDETLVNLIRAYLHGIVTGRADWQKFLALCGPGGSGKSTLTKLAIALVGAENVHVTDL 558
Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595
+ +++ + R+VII+E + K+K +TGGD + Y
Sbjct: 559 DILEKDK--------FETANIKDKRLVIINEATSYRGVK--KLKALTGGDRLRFEQKYKQ 608
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLE------- 648
+ I N+ + + +RR I + ++ IA RD KL
Sbjct: 609 ALASFYPDALVIITSNEPIKTGDHTSGLYRREIPLSMNRRIAERDQR---KLIDHDRDNN 665
Query: 649 -----TKYTLEAKKWFLK----GVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD 699
Y W L+ I L+ + LK+K E T++ AW+++
Sbjct: 666 LTGEFAPYIPGLLNWVLEMDSNDATTIIKDPLNYAV--GLLKSKLENLIDTNSIAAWLNE 723
Query: 700 CCDIGENLWE---------ESHSLAKSYSEYREQELNYDRKRISTRTVTLNL-----KQK 745
+ ES Y+ Y + IS + L Q
Sbjct: 724 KITYIDRYETQIGCKSPLGESKENIWLYANYCQYCSLSGINTISLTRFSYLLLDLCNNQL 783
Query: 746 GFIGGIKREKIEKEWKSKRIIKGLKLKPAFES 777
GF R++ I+GLK++ +
Sbjct: 784 GFTVRKGRDRK------GAFIQGLKIRDHLDE 809
>gi|70727094|ref|YP_254008.1| putative DNA primase-phage associated [Staphylococcus haemolyticus
JCSC1435]
gi|68447818|dbj|BAE05402.1| putative DNA primase-phage associated [Staphylococcus haemolyticus
JCSC1435]
Length = 455
Score = 213 bits (543), Expect = 7e-53, Method: Composition-based stats.
Identities = 70/369 (18%), Positives = 136/369 (36%), Gaps = 29/369 (7%)
Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY-FESEEVMDY 485
R++G ++GI D + + + YIT F + S + E EEV
Sbjct: 101 RYIGLKNGIYDTLEEKLKSFSPQYYITNIIDVDFDKDAQSDLIEKFIKDISNEDEEVEQL 160
Query: 486 FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545
+G L N Q GG+GK+TL+ L+ + + + +D+ P
Sbjct: 161 IYEMIGYGLYRDNFLQVAFFYYSPGGNGKTTLLKLLHHFYNPENTTALSFNDLNDKFKP- 219
Query: 546 AGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFT 605
L G + I + + N + K + G+ +T + + P
Sbjct: 220 --------ANLQGKLVNIADDIDPNRIRDTGNFKIIVTGNYITLEFKGQDAFEFKPY-VK 270
Query: 606 PFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI----ANRDASFAQKLETKYTLEA-KKWFL 660
N+ + + ++RR ++IP + +D KL T + + A L
Sbjct: 271 LIFASNELPMSNDKSEGFYRRMVIIPMLRKFGKDGQKKDPMLLNKLITPHNMSALLNLAL 330
Query: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLW----EESHSLAK 716
KG+K + ++ P++ K KEE + + +I+D ++ E + K
Sbjct: 331 KGLKRTLENN-EIIEPQIARKTKEEYQHDNNPVLQFIEDA--EDKDYRQLPVVEGRNTDK 387
Query: 717 SYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFE 776
+Y Y+ N ++ + L + G+ K +++ K R +K
Sbjct: 388 AYEIYQIWCANNGYHNMNKMNFSKELSKLGYKSVAYWSKAQEKTK--RFY----VKDTTN 441
Query: 777 SVDDNSNII 785
+ D++ II
Sbjct: 442 VIYDSNGII 450
>gi|229106917|ref|ZP_04237019.1| Primase [Bacillus cereus Rock3-28]
gi|228676527|gb|EEL31271.1| Primase [Bacillus cereus Rock3-28]
Length = 519
Score = 213 bits (543), Expect = 8e-53, Method: Composition-based stats.
Identities = 54/360 (15%), Positives = 129/360 (35%), Gaps = 16/360 (4%)
Query: 401 KAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPF 460
++ ++++A + + L+ + ++ ++G+ +L + + T F
Sbjct: 153 RSGYEKEAIQAIQREADYVEELNPYNDWINLENGMYNLTSYTLEPHHSKYLSTVRVPIHF 212
Query: 461 VEGEPSQEFLDLVSGYFES-EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMN 519
E +FL + EE++ +G L + ++ ++ G G +GKS L N
Sbjct: 213 NETATCPKFLRFMKDITNDNEELIKVHQELLGYWLTTETQCEKAVYYYGRGANGKSVLAN 272
Query: 520 LIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN-ENDEINAAKI 578
L+ G+ V + S +N E ++G + I +E + +N
Sbjct: 273 LVSILVGSGNVSSVPLSQFSKNFGLEG---------IIGKTLNIAAENEMQGSRLNTEAF 323
Query: 579 KQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN 638
K + GD +T + Y + + + N+ + ++R+ ++IPF +
Sbjct: 324 KSIVSGDGITINIKYRSPIVNYKSKCRLLFLGNELPDTTDLTQGYFRKLVIIPFKRTFTE 383
Query: 639 RDASF-AQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWI 697
+ + + + W ++G+ + +V + R + +
Sbjct: 384 AERNRNLLEELKEELPGIFNWAIEGLNRLKKQKYIFSHSKVIEAEMSKYRLAQNPVLHFF 443
Query: 698 DDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIST----RTVTLNLKQKGFIGGIKR 753
+ +I SL +++ ++ ++ S + L KG I KR
Sbjct: 444 ESSIEIEVGSKIRRPSLYEAFQKWSHEQGMDSSALRSRQRFFKDFENVLDSKGIILNQKR 503
>gi|221142329|ref|ZP_03566822.1| putative DNA primase-phage associated protein [Staphylococcus
aureus subsp. aureus str. JKD6009]
gi|302750250|gb|ADL64427.1| putative DNA primase-phage associated [Staphylococcus aureus subsp.
aureus str. JKD6008]
Length = 456
Score = 213 bits (541), Expect = 1e-52, Method: Composition-based stats.
Identities = 70/351 (19%), Positives = 132/351 (37%), Gaps = 25/351 (7%)
Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY-FESEEVMDY 485
R++G ++GI D + + + YIT F +G S + E EEV
Sbjct: 101 RYIGLKNGIYDTVEERLNPFSPQYYITNIIDVDFDKGAQSDLIERFIKDISNEDEEVEQL 160
Query: 486 FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545
+G L N Q GG+GK+TL+ L+ + + + +D+ P
Sbjct: 161 IYEMIGYGLYRDNFLQVAFFYYSPGGNGKTTLLKLLHHFYNPENTTALSFNDLNDKFKP- 219
Query: 546 AGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFT 605
L G + I + + N + K + G+ +T + + P
Sbjct: 220 --------ANLQGKLVNIADDIDPNRIKDTGNFKIIVTGNYITLEFKGQDAFEFKPY-VK 270
Query: 606 PFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI----ANRDASFAQKLETKYTLEA-KKWFL 660
N+ + + ++RR ++IP + +D KL T + + A L
Sbjct: 271 LIFASNELPMSNDKSEGFYRRMVIIPMLRKFGKGGQKKDPMLLNKLITPHNMSALLNLAL 330
Query: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIG----ENLWEESHSLAK 716
KG+K + ++ P++ K KEE + + +I+D D + + K
Sbjct: 331 KGLKRTLENN-EIIEPKIARKTKEEYQFENNPVLQFIEDATDKDYRQLPVVEGRNTD--K 387
Query: 717 SYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIK 767
+Y Y+ +N ++ + L + G+ ++E+ KSKR K
Sbjct: 388 AYEIYQIWCVNNGYHHLNKFNFSKELAKIGYKTVSYYSRVEE--KSKRFYK 436
>gi|251810225|ref|ZP_04824698.1| DNA primase-phage associated protein [Staphylococcus epidermidis
BCM-HMP0060]
gi|251806277|gb|EES58934.1| DNA primase-phage associated protein [Staphylococcus epidermidis
BCM-HMP0060]
Length = 455
Score = 212 bits (540), Expect = 2e-52, Method: Composition-based stats.
Identities = 70/369 (18%), Positives = 134/369 (36%), Gaps = 29/369 (7%)
Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY-FESEEVMDY 485
R++G ++GI D + + + YIT F E S + + EEV
Sbjct: 101 RYIGLKNGIYDTIEEKLNSFSPQYYITNIIDVDFNEQAQSDLIERFIKDISNDDEEVEQL 160
Query: 486 FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545
+G L N Q GG+GK+TL+ L+ + + + +D+ P
Sbjct: 161 IYEMIGYGLYRDNFLQVAFFYYSPGGNGKTTLLKLLHHFYNPENTTALSFNDLNDKFKP- 219
Query: 546 AGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFT 605
L G + I + + N + K + G+ +T + + P
Sbjct: 220 --------ANLQGKLVNIADDIDPNRIKDTGNFKIIVTGNYITLEFKGQDAFEFKPY-VK 270
Query: 606 PFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI----ANRDASFAQKLETKYTLEA-KKWFL 660
N+ + + ++RR ++IP + +D KL T Y + A L
Sbjct: 271 LIFASNELPMSNDKSEGFYRRMVIIPMLRKFGKGGQKKDPMLLNKLITPYNMSALLNLAL 330
Query: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIG----ENLWEESHSLAK 716
KG+K + ++ P++ K KEE + + +I+D D + + K
Sbjct: 331 KGLKRTLENN-EIIEPKIARKTKEEYQFDNNPVLQFIEDATDKDYRQLPVVEGRNTD--K 387
Query: 717 SYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFE 776
+Y Y+ N ++ + L + G+ K++++ K R +K
Sbjct: 388 AYEIYQIWCANNGYHHMNKMNFSKELSKLGYKSVAYWSKVQEKTK--RFY----VKETTN 441
Query: 777 SVDDNSNII 785
+ D + I
Sbjct: 442 KIYDTNGTI 450
>gi|330684410|gb|EGG96135.1| phage/plasmid primase, P4 family, C-terminal domain protein
[Staphylococcus epidermidis VCU121]
Length = 455
Score = 212 bits (539), Expect = 2e-52, Method: Composition-based stats.
Identities = 69/369 (18%), Positives = 135/369 (36%), Gaps = 29/369 (7%)
Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY-FESEEVMDY 485
R++G ++GI D+ + + + YIT F E S + + EEV
Sbjct: 101 RYIGLKNGIYDIVEEKLKAFSPQYYITNIIDVDFNEQAQSDLIERFIKDISNDDEEVEQL 160
Query: 486 FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545
+G L N Q GG+GK+TL+ L+ + + + +D+ P
Sbjct: 161 IYEMIGYGLYRDNFLQVAFFYYSPGGNGKTTLLKLLHHFYNPENTTALSFNDLNDKFKP- 219
Query: 546 AGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFT 605
L G + I + + N + K + G+ +T + + P
Sbjct: 220 --------ANLQGKLVNIADDIDPNRIKDTGNFKIIVTGNYITLEFKGQDAFEFKPY-VK 270
Query: 606 PFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI----ANRDASFAQKLETKYTLEA-KKWFL 660
N+ + + ++RR ++IP + +D KL T + + A L
Sbjct: 271 LIFASNELPMSNDKSEGFYRRMVIIPMLRKFGKGGQKKDPMLLNKLITPHNMSALLNLAL 330
Query: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIG----ENLWEESHSLAK 716
KG+K + ++ P++ K KEE + + +I+D D + + K
Sbjct: 331 KGLKRTLENN-EIIEPKITRKTKEEYQFDNNPVLQFIEDATDKDYRQLPVVEGRNTD--K 387
Query: 717 SYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFE 776
+Y Y+ N ++ + L + G+ K++++ K R +K
Sbjct: 388 AYEIYQIWCANNGYHHMNKMNFSKELSKLGYKSVAYWSKVQEKTK--RFY----VKETTN 441
Query: 777 SVDDNSNII 785
+ D + I
Sbjct: 442 KIYDTNGTI 450
>gi|48696649|ref|YP_024428.1| integrase [Vibrio phage VP2]
gi|40950047|gb|AAR97638.1| integrase [Vibrio phage VP2]
Length = 762
Score = 211 bits (537), Expect = 4e-52, Method: Composition-based stats.
Identities = 131/804 (16%), Positives = 245/804 (30%), Gaps = 136/804 (16%)
Query: 9 QAKQAIHNGFKLIPLRL-GDKRPQRLGKWEEQLLSSEK--IDKLPACG-------FGFVC 58
A+ I NG +IP+ G P ++ Q S K ID G G C
Sbjct: 24 AARFYIKNGLYVIPVMPNGKSLPSKMYNIGYQHASKNKNTIDSWFGVGGRFRGFNLGIAC 83
Query: 59 GVGEQPLYAFDIDSKDEKTANTFKDT--FEILHGTPIVRIGQKPKILIPFRMNKEGIKKK 116
G ++A DID +D K F + E +G + I + P + + K
Sbjct: 84 G-KRGGVFAVDIDVEDSKGNRGFDNLAILEEKYGKLVAPIQETPTGGRHYLFQWDKYAKS 142
Query: 117 KTTESTQGHLDILG-----CGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVE 171
+ + + +D G C + VA+ + + EYTW+ P + DV
Sbjct: 143 SSGKIAKA-IDTRGGDEDSCKSHIVAWP-SVRDEGEYTWSMP------------TLGDVP 188
Query: 172 YLFKFFQE-ITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWI 230
+ K+ + + VP + + +YT R+I L + +DEW+
Sbjct: 189 EIPKWISDALGVPWTGNMNRGSEEIDEDDLET-RYTPRQIWRMLEYIDPD--ELEYDEWL 245
Query: 231 PVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFD---FEEIGDTAKKRSTF 287
V+ AVH + +G E+A RWS++G+ Y + + +W +FD +G
Sbjct: 246 AVLQAVHSQYPD-DQGYELADRWSQRGARYKPDEVSIRWQSFDEHGTIRVGTLIYFAQKN 304
Query: 288 T------SLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNV 341
++A YNK + + + D
Sbjct: 305 GFKPNTEPKGAEEPSEDTDSVVAE-----YNKKFGVVMVGNKLRILMEQ---FNPDPFQD 356
Query: 342 YIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSK 401
+++ A + N +V + + +K + WF + RR+ V +
Sbjct: 357 NFKLMSVQDFKALMANDIVWYGDS--------KGKSKPVQKSDIWFVNEKRREFVNGLT- 407
Query: 402 AKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELY--ITKSTGTP 459
+D G ++ G + K + K
Sbjct: 408 ------------FMPDKPREVD----------GCFNVWEGWRYKEVAGDWSLFKKHVKAV 445
Query: 460 FVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMN 519
E + +D + + N + ++G+ G+GK T+ N
Sbjct: 446 VGSQEHYEWLMDWFADALQDPM----------------NPKGCAVVMKGIEGTGKGTIAN 489
Query: 520 LIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN-ENDEINAAKI 578
+ FG Y + ++ L + +V E ++ A +
Sbjct: 490 VFGELFGQHYKHIIQEEQLIGKFNG----------HLEEALLVFADEVTYGGNKKVAGTL 539
Query: 579 KQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN 638
K + + + I N+ F+ + RR+ VI A+
Sbjct: 540 KGLVTEKKLMIERKGLDATPYR-NCLRLMIASNEDWFIPAGPHS--RRWFVIDVPDSFAS 596
Query: 639 RDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID 698
+ F + + + I L L + TD+ W
Sbjct: 597 DKSYFDAIWKQMENGGYEAMMYELRNREIKSDLRKAPETKLLMEQRARYTTTDSVVEWWA 656
Query: 699 DCCDIGENL---------------WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLK 743
D + G + + SL Y E+ + KR++ ++
Sbjct: 657 DKVEAGVIGVTGYEEFGDEVDWPQFVDKASLYVDYQEWCQANGA---KRLTKPAFYAKVE 713
Query: 744 QKGFIGGIKREKIEKEWKSKRIIK 767
+ F R KR+ +
Sbjct: 714 -RDFKFVDCRPANPHGGPRKRMFE 736
>gi|48696691|ref|YP_024985.1| putative integrase [Vibrio phage VP5]
gi|40806154|gb|AAR92072.1| putative integrase [Vibrio phage VP5]
Length = 762
Score = 211 bits (536), Expect = 6e-52, Method: Composition-based stats.
Identities = 131/804 (16%), Positives = 244/804 (30%), Gaps = 136/804 (16%)
Query: 9 QAKQAIHNGFKLIPLRL-GDKRPQRLGKWEEQLLSSEK--IDKLPACG-------FGFVC 58
A+ I NG +IP+ G P ++ Q S K ID G G C
Sbjct: 24 AARFYIKNGLYVIPVMPNGKSLPSKMYNIGYQHASKNKNTIDSWFGVGGRFRGFNLGIAC 83
Query: 59 GVGEQPLYAFDIDSKDEKTANTFKDT--FEILHGTPIVRIGQKPKILIPFRMNKEGIKKK 116
G ++A DID +D K F + E +G + I + P + + K
Sbjct: 84 G-KRGGVFAVDIDVEDSKGNRGFDNLAILEEKYGKLVAPIQETPTGGRHYLFQWDKYAKS 142
Query: 117 KTTESTQGHLDILG-----CGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVE 171
+ + + +D G C + VA+ + + EYTW+ P + DV
Sbjct: 143 SSGKIAKA-IDTRGGDEDSCKSHIVAWP-SVRDEGEYTWSMP------------TLGDVP 188
Query: 172 YLFKFFQE-ITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWI 230
+ K+ + + VP + + +YT R+I L + +DEW+
Sbjct: 189 EIPKWISDALGVPWTGNMNRGSEEIDEDDLET-RYTPRQIWRMLEYIDPD--ELEYDEWL 245
Query: 231 PVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFD---FEEIGDTAKKRSTF 287
V+ AVH + +G E+A RWS++G+ Y + + +W +FD +G
Sbjct: 246 AVLQAVHSQYPD-DQGYELADRWSQRGARYKPDEVSIRWQSFDEHGTIRVGTLIYFAQKN 304
Query: 288 T------SLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNV 341
++A YNK + + + D
Sbjct: 305 GFKPNTEPKGAEEPSEDTDSVVAE-----YNKKFGVVMVGNKLRILMEQ---FNPDPFQD 356
Query: 342 YIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSK 401
+++ A + N +V + + +K + WF + RR+ V +
Sbjct: 357 NFKLMSVQDFKALMANDIVWYGDS--------KGKSKPVQKSDIWFVNEKRREFVNGLT- 407
Query: 402 AKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFV 461
+D G ++ G + K + V
Sbjct: 408 ------------FMPDKPREVD----------GCFNVWEGWRYKEVAGDWSLFKKHVKAV 445
Query: 462 EGEPSQ--EFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMN 519
G +D + + N + ++G+ G+GK T+ N
Sbjct: 446 VGSQEHYGWLMDWFADALQDPM----------------NPKGCAVVMKGIEGTGKGTIAN 489
Query: 520 LIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN-ENDEINAAKI 578
+ FG Y + ++ L + +V E ++ A +
Sbjct: 490 VFGELFGQHYKHIIQEEQLIGKFNG----------HLEEALLVFADEVTYGGNKKVAGTL 539
Query: 579 KQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN 638
K + + + I N+ F+ + RR+ VI A+
Sbjct: 540 KGLVTEKKLMIERKGLDATPYR-NCLRLMIASNEDWFIPAGPHS--RRWFVIDVPDSFAS 596
Query: 639 RDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID 698
+ F + + + I L L + TD+ W
Sbjct: 597 DKSYFDAIWKQMENGGYEAMMYELRNREIKSDLRKAPETKLLMEQRARYTTTDSVVEWWA 656
Query: 699 DCCDIGENL---------------WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLK 743
D + G + + SL Y E+ + KR++ ++
Sbjct: 657 DKVEAGVIGVTGYEEFGDEVDWPQFVDKASLYVDYQEWCQANGA---KRLTKPAFYAKVE 713
Query: 744 QKGFIGGIKREKIEKEWKSKRIIK 767
+ F R KR+ +
Sbjct: 714 -RDFKFVDCRPANPHGGPRKRMFE 736
>gi|56692689|ref|YP_164147.1| D5 family NTPase [Singapore grouper iridovirus]
gi|42517401|gb|AAS18067.1| D5 family NTPase [Singapore grouper iridovirus]
Length = 968
Score = 210 bits (534), Expect = 8e-52, Method: Composition-based stats.
Identities = 67/297 (22%), Positives = 111/297 (37%), Gaps = 22/297 (7%)
Query: 465 PSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524
P L S F E +F R +GGN + + G G +GK+ L +
Sbjct: 655 PVARLLTFFSTVFPDEGTRRFFLRNAAQTFIGGNPDKVCLFWTGTGNNGKTVTQTLFEKM 714
Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRL-MGSRIVIISETNENDEINAAKIKQMTG 583
G + + + R P AG ANP L RL G R ++ E N ++ INA +K MTG
Sbjct: 715 LG-CFAVKMSTQTLT-GRKPSAGAANPELARLGCGVRWAVMEEPNSDETINAGTLKSMTG 772
Query: 584 GDCMTARLNY--GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR-- 639
D AR Y G T E F ++ N +++ D A W R V+PF+
Sbjct: 773 NDSFFARDLYCAGKTTHEIKPLFKLHVICNTLPAIKDADQATWNRVRVVPFEATFVTPGT 832
Query: 640 ------------DASFAQKLETKYTLEAKKWFLKGVKA-YISKGLDVDIPEVCLKAKEEE 686
D ++KL+ W+L + ++ + P ++A E
Sbjct: 833 KAPADAKYKFPADTDISRKLDR--LTAPLAWYLVYCWSCMQNETVKYVPPAKVMEATMEY 890
Query: 687 RQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLK 743
++ D ++ + D+ ++ E+ + R S + L+
Sbjct: 891 QKEHDLFRQFYDEKLHQNPTACLSCDEAYAAFREWATLNCPHSFARRSKTQIVKCLE 947
Score = 105 bits (261), Expect = 4e-20, Method: Composition-based stats.
Identities = 52/381 (13%), Positives = 106/381 (27%), Gaps = 61/381 (16%)
Query: 133 QYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSII 192
+ + +IHP +++Y F+ D + + L K+ + K
Sbjct: 226 REAMILSIHPVERQKY--------FRRYDFTANNPGALLRLTKY----SAVRAKLDMVRQ 273
Query: 193 PSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARR 252
W + + + + + W+ V + +T+GS +G +I
Sbjct: 274 RKTCWKTDLTEFHKLKRFRELTGMLTGDIAD-DRQSWLHVGFCLWQQTQGSLEGYKIWLN 332
Query: 253 WSKQGSTYDEENFNYKW------DTFDFEEIGDTAKKRSTFTSLFYHHGKLIP------K 300
+SK+ DE+ W ++F + +K + L + K P
Sbjct: 333 FSKKSEKCDEDECWRIWNNQMRPNSFTEGTLVYMVQKHNPAAYLNWLQTKSTPVKDMGTN 392
Query: 301 GLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLV 360
+A D Y K Y D W + ++ ++ D + L
Sbjct: 393 VAMAKIMWDYYGHEFVCCGAKNQIWYRFDGLTWVESNQGIDLRSLISADG--GPLKRLLT 450
Query: 361 SMKEDVFDLSEEPEDNNKN-------------------------SKSPRFWFNTDYRRQN 395
E V + + N + + R +
Sbjct: 451 RQLEAVKTALAQADGGNDSGISDVEEDEELEETDEEDGDNGNPWASELRRLPKKKLKIII 510
Query: 396 VEENSKAKSTAQSLEAGSIFSIT---------SDLLDSSSRFLGEQDGILDLETGQKVKP 446
S K + ++ SD LD+ +G+ D + G
Sbjct: 511 ARLKSNLKGIEMTGVKNNVLRECAELFYRPNFSDELDADPLLFAFSNGVYDFKEGCLRDG 570
Query: 447 TKELYITKSTGTPFVEGEPSQ 467
E +++ F+ P
Sbjct: 571 RPEDKLSRRAPIDFIAFAPIP 591
>gi|319648621|ref|ZP_08002834.1| Gp60 protein [Bacillus sp. BT1B_CT2]
gi|317389313|gb|EFV70127.1| Gp60 protein [Bacillus sp. BT1B_CT2]
Length = 223
Score = 210 bits (534), Expect = 9e-52, Method: Composition-based stats.
Identities = 51/197 (25%), Positives = 79/197 (40%), Gaps = 16/197 (8%)
Query: 577 KIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI 636
+KQ+TGG+ M+AR + +P F F N V+ D+ WRR +IPF I
Sbjct: 1 MVKQITGGEKMSARFLRQEYFEFTP-EFKVFFTTNHKPIVKGSDEGIWRRIRLIPFTVTI 59
Query: 637 ANR--DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQ 694
D QKL + +W ++G + +GL PE KA E R+ D
Sbjct: 60 PKEKVDKKLPQKLAAE-MPGILRWAVEGCLKWQKEGLG--EPEAIKKATEGYREDMDILG 116
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
++ + C + E+ L K Y + D + R ++ +GF
Sbjct: 117 PFMQERCVQHPSAKIEAKELYKDYKNWC---FENDEIELKNRAFYRQIEIRGF------- 166
Query: 755 KIEKEWKSKRIIKGLKL 771
K E K+K G+ L
Sbjct: 167 KKENGAKNKVFFYGIGL 183
>gi|171913150|ref|ZP_02928620.1| primase, putative [Verrucomicrobium spinosum DSM 4136]
Length = 599
Score = 210 bits (534), Expect = 9e-52, Method: Composition-based stats.
Identities = 97/516 (18%), Positives = 179/516 (34%), Gaps = 55/516 (10%)
Query: 274 FEEIGDTAKKRSTFTSLFYHH--GKLIPKGLLASRFSDAYNKAMFSIYKKG--HFLYTAD 329
F EI + + + Y + P L A+ N+ F +Y
Sbjct: 118 FSEITWPSDWQLPWVKSPYDRIVDEEGPPVLEAANGGITLNQMFFVTKYTQEHKCIYHGS 177
Query: 330 TKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNT 389
+Y+ +N ++ + I ++ L + + + +
Sbjct: 178 EGEFYEYSQNTGLYSKISKETIKRRFLDELKNAAKVLGMPQLQI---------------- 221
Query: 390 DYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQ--KVKPT 447
+ ++S S L++ S + D + +G++ E +
Sbjct: 222 ------LRKDSTVTSLLALLQS---VVEQSRIFDEKPEAIHVANGMICFEEDKVLLKSFH 272
Query: 448 KELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIR 507
+ +V FL + EE ++ + G LLG NKAQR + +
Sbjct: 273 PSFLSRNACPYQYVPTATCNRFLTELLQPALREEDINMLQKWAGSVLLGNNKAQRLMMLL 332
Query: 508 GVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISET 567
G G GKSTLM +++ G+Q V + + L+ +G ++ +
Sbjct: 333 GSAGGGKSTLMTVLEGVIGSQNVAQMRTEHLGE---------RFELLSFVGKTLLTGKDV 383
Query: 568 NEN--DEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVR--NPDDAW 623
A+ IK + GGD + A N + +F I N L +R DAW
Sbjct: 384 AAEFLRHKGASTIKSLVGGDLLEAEKKGFNNRVQIRGNFNIGITCNADLVIRLEGDVDAW 443
Query: 624 WRRYIVIPFDKPIA-NRDASFAQKLETKYTLEAKKWFLKGVKAYIS----KGLDVDIPEV 678
RR +V+ + P R + F Q+L + +W ++G A I G D + E
Sbjct: 444 RRRLLVLRYVAPPPKKRISGFDQELLKQEGAGILRWMVEGAIALIRDLRTHG-DYVLTER 502
Query: 679 CLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738
E +D+ + ++ DC + E L + Y EY + +STR +
Sbjct: 503 QQDQIEALLDQSDSIKLFVRDCLERSEGTDVTKKELEQEYCEYCD---TMGWSPLSTREI 559
Query: 739 TLNLKQK--GFIGGIKREKIEKEWKSKRIIKGLKLK 772
+ L K I + +R +G+++K
Sbjct: 560 SQQLNDKILKIHKVSCSHDIRRIGSQQRGFRGIRMK 595
>gi|46580593|ref|YP_011401.1| primase [Desulfovibrio vulgaris str. Hildenborough]
gi|46450012|gb|AAS96661.1| primase, putative [Desulfovibrio vulgaris str. Hildenborough]
gi|311234328|gb|ADP87182.1| phage/plasmid primase, P4 family [Desulfovibrio vulgaris RCH1]
Length = 830
Score = 209 bits (532), Expect = 2e-51, Method: Composition-based stats.
Identities = 60/386 (15%), Positives = 134/386 (34%), Gaps = 26/386 (6%)
Query: 398 ENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTG 457
++ S + S L D L ++G+L++ T + ++ T
Sbjct: 457 TAARVASCSSLAMTMSAIPHGRSLNDRDDW-LCIENGMLNVTTLELAPHDRDYLATIMLP 515
Query: 458 TPFVE--GEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKS 515
+ + +L ++ ++E + +G L K + + + G G GKS
Sbjct: 516 VRYDSETTPKPERWLTFLAETIQTEGPIAQLQEFMGYCLTRQTKFDKCLLLLGPGSDGKS 575
Query: 516 TLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA 575
++ +++ G + + A L G + + +E + +
Sbjct: 576 KVIKVLRAMVGEANCSAVSMTGLEDQFQRSA---------LFGKLLNVGTEVT-TAALES 625
Query: 576 AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP 635
K + GD + A + +++ +P NK V + D ++RR + I F +
Sbjct: 626 EYFKAIVTGDPIQASFKHKDSFEFTPC-VKLVYAANKLPRVMDNSDGYFRRILPIQFKRQ 684
Query: 636 IANRDASFAQKLETKYTLE---AKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDT 692
D + LE K E +W L G+ +++G + + + R+ +
Sbjct: 685 FLENDPAMDPDLEGKLMAELDGIFEWALVGLHRLLAQG-RFTMCDETRDILMDYRRFNNP 743
Query: 693 YQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLK---QKGFIG 749
++ D C I +N + L + Y + K+++ L+ +K
Sbjct: 744 VLGFVQDRCTITDNTRTDIKDLYADFKRYASENG---FKQLNRENFMRELETAARKVRED 800
Query: 750 GIKREKIEKEWKSKR--IIKGLKLKP 773
R + R +++ + L P
Sbjct: 801 AAVRVTRPRAANGARPYLVENITLNP 826
>gi|264680173|ref|YP_003280082.1| Phage/plasmid primase P4, C-terminal protein [Comamonas
testosteroni CNB-2]
gi|262210688|gb|ACY34786.1| Phage/plasmid primase P4, C-terminal protein [Comamonas
testosteroni CNB-2]
Length = 372
Score = 208 bits (530), Expect = 3e-51, Method: Composition-based stats.
Identities = 61/344 (17%), Positives = 122/344 (35%), Gaps = 27/344 (7%)
Query: 425 SSRFLGEQDGILDLE-TGQ-KVKPTKELYITKSTGTPFVEGEPSQ-EFLDLVSGYFESEE 481
+ L ++G L L TG K + G + P F + +
Sbjct: 37 DAAVLPLKNGYLHLAPTGNVLQPHDKAAGLQYVIGCDYDSTAPEPARFNHFLQTILPDVD 96
Query: 482 VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQN 541
V + VG LL ++ QR G G +GK L N+++ + +A D
Sbjct: 97 VRNRVQEYVGYTLLPDSRFQRLQLWLGNGANGKGVLANIVQALHAKCAAVQLDALD---- 152
Query: 542 RPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESP 601
L L+G+ ++ ET + +N +K G+ + Y + P
Sbjct: 153 --------GFKLAGLIGASLIYADETPQ-RGMNEQILKSAVAGELLQIDRKYREPLT-LP 202
Query: 602 ASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDAS--FAQKLETKYTLEAKKWF 659
++ N+ + + + WRR+ ++PF I RD A + W
Sbjct: 203 LKGKWLVLANQFPSITDQSNGLWRRFDIVPFPVTIPERDRDPMLASTIIKTELSGVLNWS 262
Query: 660 LKGVKAYISKG-LDVDIPEVCLKAKEEERQGTDTYQAWIDDC-CDIGENLWEESHSLAKS 717
L G++ + +G D +P A+ + ++ T++ Q+W DD ++ + + +
Sbjct: 263 LIGLQRLLERGRFDECLPSPMRSARRDVQRETNSVQSWADDRGIELSIAVETSKTDVYAN 322
Query: 718 YSEYREQELNYDRKRISTRTVTLNLKQ---KGFIGGIKREKIEK 758
Y + + +++ + G + G K +
Sbjct: 323 YVSWCRENG---MSPVASPKFWKRMPDTVGHGLVDGRKTITTGR 363
>gi|168026035|ref|XP_001765538.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683176|gb|EDQ69588.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 311
Score = 208 bits (529), Expect = 3e-51, Method: Composition-based stats.
Identities = 64/271 (23%), Positives = 119/271 (43%), Gaps = 19/271 (7%)
Query: 464 EPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKY 523
+ + E LDL++ F +E++ YF R + L G N + F G G +GK+ +++L++
Sbjct: 8 KATNEVLDLLAKVFPNEDIRRYFMRFISSCLEGRNANKIFSIWSGSGDNGKTVMVSLVER 67
Query: 524 AFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTG 583
AFG+ Y + S +M R ++ A P L L G I ++ E +E D++N +K++TG
Sbjct: 68 AFGD-YAVKMPTSLLMGKRV-QSSAATPELAMLKGRLIALVQEPDEGDKLNLGVMKELTG 125
Query: 584 GDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN----- 638
D + R Y + P + ++ N+ L + D A W R V+PF +
Sbjct: 126 NDSLYIRGLYEEG-AIIPQTAKFVLIANRILQMSTFDKAVWSRVRVMPFVSTFVDKIEPS 184
Query: 639 --------RDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGT 690
+D +F+ K+ + ++ K Y++ GL + P+ E R
Sbjct: 185 HNPLTTHLKDINFSNKIPL-LAPVFMRLVIEEYKQYLTYGL--EEPDEVKDCTETIRVSN 241
Query: 691 DTYQAWIDDCCDIGENLWEESHSLAKSYSEY 721
D + ++ + L +Y +
Sbjct: 242 DIFGQFLSANVEKSNKSIVAIKELYDTYKYW 272
>gi|120602099|ref|YP_966499.1| plasmid/phage primase [Desulfovibrio vulgaris DP4]
gi|120562328|gb|ABM28072.1| plasmid/phage primase, P4 family [Desulfovibrio vulgaris DP4]
Length = 828
Score = 208 bits (529), Expect = 3e-51, Method: Composition-based stats.
Identities = 59/372 (15%), Positives = 130/372 (34%), Gaps = 24/372 (6%)
Query: 379 NSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDL 438
+ + R N + S A ++ A L+ +L ++G+L++
Sbjct: 438 DEQLKRRAINALGDEATASRVASCSSLAMTMSAIP----HGRSLNDREDWLCIENGMLNV 493
Query: 439 ETGQKVKPTKELYITKSTGTPFVEGEPS--QEFLDLVSGYFESEEVMDYFTRCVGMALLG 496
T + V ++ T + + +L + ++E + +G L
Sbjct: 494 STLELVPHDRDYLATIMLPVRYDSEATPKPERWLTFLGETIQTEGPIAQLQEFMGYCLTR 553
Query: 497 GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRL 556
K + + + G G GKS ++ +++ G + + A L
Sbjct: 554 QTKFDKCLLLLGPGSDGKSKVIKVLRAMVGEANCSAVSMTGLEDQFQRSA---------L 604
Query: 557 MGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV 616
G + + +E + + K + GD + A + +++ +P NK V
Sbjct: 605 FGKLLNVGTEVT-TAALESEYFKAIVTGDPIQASFKHKDSFEFTPC-VKLVYAANKLPRV 662
Query: 617 RNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLE---AKKWFLKGVKAYISKGLDV 673
+ D ++RR + I F + D + LE+K E +W L G+ +++G
Sbjct: 663 MDNSDGYFRRILPIQFKRQFLENDPAMDPDLESKLMAELDGIFEWSLVGLHRLLAQG-RF 721
Query: 674 DIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRI 733
+ + + R+ + ++ D C I EN + L + Y + K++
Sbjct: 722 TMCDETRDILMDYRRFNNPVLGFVQDWCCITENTRTDIKDLYAQFKRYASENG---FKQL 778
Query: 734 STRTVTLNLKQK 745
+ L+
Sbjct: 779 NRENFMRELETA 790
>gi|49237319|ref|YP_031600.1| putative D5 family NTPase/ATPase [Frog virus 3]
gi|47060137|gb|AAT09681.1| putative D5 family NTPase/ATPase [Frog virus 3]
Length = 973
Score = 208 bits (528), Expect = 4e-51, Method: Composition-based stats.
Identities = 60/283 (21%), Positives = 107/283 (37%), Gaps = 22/283 (7%)
Query: 465 PSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524
P + L + F E +F R +GGN + + G G +GK+ L +
Sbjct: 659 PVTKLLAFFASVFPDEGTRRFFLRNAAATFVGGNPDKVVLFWTGTGNNGKTVTQTLFEKM 718
Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRL-MGSRIVIISETNENDEINAAKIKQMTG 583
G + + + R P AG ANP + RL G R ++ E N ++ INA +K MTG
Sbjct: 719 LG-CFAVKMSTQTLT-GRKPSAGSANPEMARLGGGVRWAVMEEPNSDETINAGTLKSMTG 776
Query: 584 GDCMTARLNY--GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR-- 639
D AR Y G T E F ++ N +++ D A W R V+PF+
Sbjct: 777 NDSFFARDLYCAGKTTFEIKPMFKLHVICNALPGIKDADQATWNRVRVVPFESTFVTPGT 836
Query: 640 ------------DASFAQKLETKYTLEAKKWFLKGVKA-YISKGLDVDIPEVCLKAKEEE 686
D +KL+ W+L A ++ + P ++A
Sbjct: 837 TAPADAKYVFPADTDITRKLDR--LTAPLAWYLVYCWACIQNERVKYVPPPKVMEATMAY 894
Query: 687 RQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYD 729
++ D ++ ++++ + ++ ++ +
Sbjct: 895 QKEHDLFRQFVEEMLRKDPDSTLTCDDAYTAFRDWTSANSPHG 937
Score = 111 bits (277), Expect = 6e-22, Method: Composition-based stats.
Identities = 42/328 (12%), Positives = 96/328 (29%), Gaps = 37/328 (11%)
Query: 177 FQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAV 236
+ + + K + W + + + + +T + + + W+ V +
Sbjct: 272 LADYSAVMAKLDVARQRKPAWNTDATKAHRLKRVTDLTAMLTADLAD-DRQTWLNVGFCL 330
Query: 237 HHETRGSSKGKEIARRWSKQGSTYDEENFNYKWD---TFDFEEIGDTAKKRSTFTSLFYH 293
+T GS++G ++ +SK+ DE+ W+ + G Y
Sbjct: 331 WQQTSGSAEGYKVWLSFSKKSDKCDEDECWTIWNNQMRPNSFTEGTLVYLAQKHNPGAYL 390
Query: 294 H---------GKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNN---- 340
+ + +A D Y K Y D W + ++
Sbjct: 391 NWLQVKSTPVNDIGTNVAMAKIMWDYYGHQFVCCGGKTQTWYRFDGLTWVESNQGTDLRS 450
Query: 341 -VYIWSLTLDKITASIMNFLVSMK----------EDVFDLSEEPEDNNKNSKSPRFWFNT 389
+ L ++ ++ + + K +D D + + +D+N R +
Sbjct: 451 LISAEGGPLRRLLMRQLDAVTAAKARGGRDSGNEDDEEDSATDEDDSNPWDSELRRLDSE 510
Query: 390 DYRRQNVEENSKAKSTAQSLEAGSIFSITSDLL---------DSSSRFLGEQDGILDLET 440
+ K + ++ ++L DS +GI D
Sbjct: 511 VLDTMVKRLRNNLKGIEMTGVKNNVLRECAELFYQPEFGDVIDSDPLLFAFANGIYDFRE 570
Query: 441 GQKVKPTKELYITKSTGTPFVEGEPSQE 468
G E +++ FV P +
Sbjct: 571 GCLRDGRPEDKLSRRAPVDFVMFGPIPK 598
>gi|150024492|ref|YP_001295318.1| hypothetical protein FP0387 [Flavobacterium psychrophilum JIP02/86]
gi|149771033|emb|CAL42500.1| Protein of unknown function [Flavobacterium psychrophilum JIP02/86]
Length = 463
Score = 207 bits (527), Expect = 5e-51, Method: Composition-based stats.
Identities = 55/385 (14%), Positives = 133/385 (34%), Gaps = 22/385 (5%)
Query: 370 SEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFL 429
E ++ + R + + ++ + + + + + +
Sbjct: 75 WEHINNDLFKDFLGQVALKIGVDRFDAKLHNFKDELLKQFISDARLKEIKSEI--QTTLI 132
Query: 430 GEQDGILDL--ETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFT 487
+G ++ T + K ++T F +F++ ++ +E+ + +
Sbjct: 133 NLINGTFEINGTTQNIREFRKSDFLTYQLPFEFDPNAKCPKFMNFLNEVLPEKELQNVLS 192
Query: 488 RCVGMALL--GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545
+G + G K ++ + + G G +GKS L +I G + N +
Sbjct: 193 EYLGYIFIKNGVLKLEKVLLLYGTGANGKSVLFEIICALIGKHNITNYSLQSLTDKDGYR 252
Query: 546 AGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFT 605
+ + SE N ++ + KQ+ G+ + ARL YGN
Sbjct: 253 R-------AMIANKLLNYASEI--NGKLEISFFKQLASGEPVEARLPYGNPLL-ITDYAK 302
Query: 606 PFIVPNKHLFVRNPDDAWWRRYIVIPF--DKPIANRDASFAQKLETKYTLEAKKWFLKGV 663
N+ +A++RR+I++PF P ++ A+++ W ++G+
Sbjct: 303 LIFNCNELPRDTEQTNAFFRRFIILPFRNTIPPEKQNKKLAEQIINDELSGIFNWVIEGL 362
Query: 664 KAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD-CCDIGENLWEESHSLAKSYSEYR 722
K + + ++ + + +D+ +++D + N + Y Y
Sbjct: 363 KRLLEN-ENFTESQIIKNEVVQYQIESDSVLMFLEDLEYEKSLNETVTVSFVYDEYKTYC 421
Query: 723 EQELNY--DRKRISTRTVTLNLKQK 745
+ K S R V +++K
Sbjct: 422 RENGYVFCSVKTFSQRIVNKGIERK 446
>gi|329955101|ref|ZP_08296082.1| phage/plasmid primase, P4 family domain protein [Bacteroides clarus
YIT 12056]
gi|328526391|gb|EGF53406.1| phage/plasmid primase, P4 family domain protein [Bacteroides clarus
YIT 12056]
Length = 486
Score = 207 bits (526), Expect = 8e-51, Method: Composition-based stats.
Identities = 54/335 (16%), Positives = 117/335 (34%), Gaps = 19/335 (5%)
Query: 445 KPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFI 504
+ + + Y + F + +++V + VG L K ++ +
Sbjct: 168 EHSADDYFFYVLPYEYDPKAMCPMFHKFLDEVLPAKDVQEVLQEFVGCCLNPFIKLEKAL 227
Query: 505 HIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVII 564
G G +GKS ++ G V + + + ++ + +
Sbjct: 228 CCVGSGFNGKSVFFEIVMALLGEDNVCSYNINSLCDDKGYSR-------AMIKNKLLNYS 280
Query: 565 SETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWW 624
S+ N KQ+T G+ + AR Y N + + +
Sbjct: 281 SDFN-GKIFANGIFKQLTSGEPVEARRLYKEP-EILKDYARIACNCNSMPYSADTSFGFR 338
Query: 625 RRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKA 682
RR +++PFD I D A+KL+++ + W ++G+ +I G +
Sbjct: 339 RRLLIVPFDVKIDKGKADPDLAKKLKSELS-GILIWAIEGLGRFIRNGKKLSKSSTLENL 397
Query: 683 KEEERQGTDTYQAWIDD-CCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLN 741
++ ++ TDT ++ C + SL +Y EY +K + +
Sbjct: 398 EQAYKEDTDTVVMFLSAKKCVPDNDNKIGLTSLFNNYREYCRDNN---QKAETRENFKMK 454
Query: 742 LKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFE 776
LK +G++ +K K + + ++L ++
Sbjct: 455 LKSEGYVVEEDNKKGVKIGINSSM---IRLSSLWD 486
>gi|168705299|ref|ZP_02737576.1| Phage/plasmid primase P4-like protein [Gemmata obscuriglobus UQM
2246]
Length = 981
Score = 206 bits (524), Expect = 1e-50, Method: Composition-based stats.
Identities = 70/467 (14%), Positives = 143/467 (30%), Gaps = 43/467 (9%)
Query: 328 ADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWF 387
W++ + A + ++ + + + + PR
Sbjct: 429 YHRAEWWEWRDGRYVSVPDDDFEKRAWV---VLRGECEAAHRVAVAAWGHGGRQGPRPKV 485
Query: 388 NTDYRRQNVEENSKAKSTAQSLEAGS---IFSITSDLLDSSSRF---------LGEQDGI 435
R+ + A S A + + + D R + +G+
Sbjct: 486 VKLDTRKVGNAVTAAASMCHLDGAVAWPVLLAADPADADHIPRLRPAPEPREFVACANGL 545
Query: 436 LD----LETGQ--KVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE-SEEVMDYFTR 488
+D TG+ T + + F FL + E E
Sbjct: 546 IDVAELFATGRATLHPATPLYFTPAAIPVAFDPAAECPTFLRFLDRVTEGDAERQSLLQE 605
Query: 489 CVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGK 548
G L + Q+F + G G +GKST + ++ G+ + + +
Sbjct: 606 IAGYLLRFDTRFQQFFLLTGDGANGKSTFLAALRALIGDHNYASVPLEEFGE-------- 657
Query: 549 ANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFI 608
+L +G + ++E E D++ AK+K GGD MT S P + +
Sbjct: 658 -RFTLGATLGKLVNAVAEVGELDKVAEAKLKSFVGGDLMTFDRKNKAPVSARP-TARLLL 715
Query: 609 VPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQK---LETKYTLEAKKWFLKGV 663
N + + WRRY ++PF I R ++ + + W L G+
Sbjct: 716 STNTPPRFADRTEGVWRRYQLVPFTAVISAEERVRGMSEPEWWVSSGELPGVLNWALAGL 775
Query: 664 KAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYRE 723
C AK E R+ + ++ ++ + E L +Y E+
Sbjct: 776 LRLHRAN-GFTSSAACEAAKAEHRELCNPHRLFLGEHVRAQEGAALRCVELFAAYVEWCR 834
Query: 724 QELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLK 770
Q R+ + + + + + + + + + G+
Sbjct: 835 Q-----RRYLPLADGNFGAEVRKVFRRVTKSRPRNGRERQNVYSGVT 876
>gi|228861234|ref|YP_002854256.1| putative D5 family NTPase/ATPase [Soft-shelled turtle iridovirus]
gi|194307514|gb|ACF42244.1| putative D5 family NTPase/ATPase [Soft-shelled turtle iridovirus]
Length = 975
Score = 206 bits (524), Expect = 1e-50, Method: Composition-based stats.
Identities = 60/283 (21%), Positives = 106/283 (37%), Gaps = 22/283 (7%)
Query: 465 PSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524
P + L + F E +F R +GGN + + G G +GK+ L +
Sbjct: 661 PVTKLLAFFASVFPDEGTRRFFLRNAAATFVGGNPDKVVLFWTGTGNNGKTVTQTLFEKM 720
Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRL-MGSRIVIISETNENDEINAAKIKQMTG 583
G + + + R P AG ANP + RL G R ++ E N ++ INA +K MTG
Sbjct: 721 LG-CFAVKMSTQTLT-GRKPSAGSANPEMARLGGGVRWAVMEEPNSDETINAGTLKSMTG 778
Query: 584 GDCMTARLNY--GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR-- 639
D AR Y G T E F ++ N +++ D A W R V+PF+
Sbjct: 779 NDSFFARDLYCAGKTTFEIKPMFKLHVICNALPGIKDADQATWNRVRVVPFESTFVTPGT 838
Query: 640 ------------DASFAQKLETKYTLEAKKWFLKGVKA-YISKGLDVDIPEVCLKAKEEE 686
D +KL+ W+L A ++ + P ++A
Sbjct: 839 TAPADAKYVFPADTDITRKLDR--LTAPLAWYLVYCWACIQNERVKYVPPPKVMEATMAY 896
Query: 687 RQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYD 729
++ D ++ + ++ + ++ ++ +
Sbjct: 897 QKEHDLFRQFAEEMLRKDPDSTLTCDDAYTAFRDWTSANSPHG 939
Score = 105 bits (262), Expect = 3e-20, Method: Composition-based stats.
Identities = 43/330 (13%), Positives = 101/330 (30%), Gaps = 39/330 (11%)
Query: 177 FQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAV 236
+ + + K + W + + + + +T + + + W+ V +
Sbjct: 272 LADYSAVMAKLDVARQRKPAWNTDATKAHRLKRVTDLTAMLTADLAD-DRQTWLNVGFCL 330
Query: 237 HHETRGSSKGKEIARRWSKQGSTYDEENFNYKWD---TFDFEEIGDTAKKRSTFTSLFYH 293
+T GS++G ++ +SK+ DE+ W+ + G Y
Sbjct: 331 WQQTSGSAEGYKVWLSFSKKSDKCDEDECWTIWNNQMRPNSFTEGTLVYLAQKHNPGAYL 390
Query: 294 H---------GKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNN---- 340
+ + +A D Y K Y D W + ++
Sbjct: 391 NWLQVKSTPVNDIGTNVAMAKIMWDYYGHQFVCCGGKTQTWYRFDGLTWVESNQGTDLRS 450
Query: 341 -VYIWSLTLDKITASIMNFLVSMK----EDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQN 395
+ L ++ ++ + + K D + E+ E+ + + ++++ RR +
Sbjct: 451 LISAEGGPLRRLLMRQLDAVTAAKARGGRDSGNEDEDDEEESATDEDDSNPWDSELRRLD 510
Query: 396 VE--------ENSKAKSTAQSLEAGSIFSITSDLL---------DSSSRFLGEQDGILDL 438
E + K + ++ ++L DS +GI D
Sbjct: 511 SEVLDAMVKRLRNNLKGIEMTGVKNNVLRECAELFYQPEFGDVIDSDPLLFAFANGIYDF 570
Query: 439 ETGQKVKPTKELYITKSTGTPFVEGEPSQE 468
G E +++ FV P +
Sbjct: 571 REGCLRDGRPEDKLSRRAPVDFVMFGPIPK 600
>gi|117926195|ref|YP_866812.1| hypothetical protein Mmc1_2915 [Magnetococcus sp. MC-1]
gi|117609951|gb|ABK45406.1| conserved hypothetical protein [Magnetococcus sp. MC-1]
Length = 765
Score = 206 bits (524), Expect = 1e-50, Method: Composition-based stats.
Identities = 63/298 (21%), Positives = 111/298 (37%), Gaps = 38/298 (12%)
Query: 7 KEQAKQAIHNGFKLIPLRLGDKRPQRL--GKWE------------EQLLSSEKIDKLPAC 52
+ ++ + GF+++P+ G K P GKW L + + P
Sbjct: 7 ETCGEKLVAAGFQILPIAPGKKYPGSYHQGKWSPYKGWNKHAERATTALELQVWKQWPGA 66
Query: 53 GFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHG-TPIVRIGQKPKILIPFRMNKE 111
G G G + DID DE + + L G T VRIG+ PK L+ +R +
Sbjct: 67 GIGVPGG----QVAGIDIDVADESVSLQLEQLAMRLFGETKAVRIGRAPKRLLVYRTDTP 122
Query: 112 GIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPH-RFKVEDTPLLSEEDV 170
KK L++L GQ FVAY IHP T Y W K+ED P+++E+
Sbjct: 123 FKGIKKHP------LEVLCLGQQFVAYAIHPDTGHPYQWINQELTDLKIEDLPVITEQQA 176
Query: 171 EYLFKFFQEITVPLVKDKKSIIPSKTWTN--------NNNRQYTNREITAFLSCFGEEFY 222
+ + + ++ + + + ++++ T + +
Sbjct: 177 HHFIEQGLALLPVEMRPARLEARGDSCNSYSAISTVISHSQAGTYEAVADAMRFISNA-- 234
Query: 223 NGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDT 280
+ +D+W+ + MA+ G+ + WS + + W F IG
Sbjct: 235 DLPYDDWMRIGMAIKGAL--GDAGEVLFAEWSASSAKNIAQETFKAWSGFKPTIIGAG 290
>gi|225734507|gb|ACO25275.1| D5 family NTPase [Epizootic haematopoietic necrosis virus]
Length = 973
Score = 206 bits (523), Expect = 2e-50, Method: Composition-based stats.
Identities = 60/283 (21%), Positives = 106/283 (37%), Gaps = 22/283 (7%)
Query: 465 PSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524
P + L + F E +F R +GGN + + G G +GK+ L +
Sbjct: 659 PMAKLLAFFASVFPDEGTRRFFLRNAAATFVGGNPDKVVLFWTGTGNNGKTVTQTLFEKM 718
Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRL-MGSRIVIISETNENDEINAAKIKQMTG 583
G + + + R P AG ANP + RL G R ++ E N ++ INA +K MTG
Sbjct: 719 LG-CFAVKMSTQTLT-GRKPSAGSANPEMARLGGGVRWAVMEEPNSDETINAGTLKSMTG 776
Query: 584 GDCMTARLNY--GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR-- 639
D AR Y G T E F ++ N +++ D A W R V+PF+
Sbjct: 777 NDSFFARDLYCAGKTTFEIKPMFKLHVICNALPGIKDADQATWNRVRVVPFESTFVTPGT 836
Query: 640 ------------DASFAQKLETKYTLEAKKWFLKGVKA-YISKGLDVDIPEVCLKAKEEE 686
D +KL+ W+L A ++ + P ++A
Sbjct: 837 TAPADAKYVFPADTDITRKLDR--LTAPLAWYLVYCWACIQNERVKYVPPPKVMEATMAY 894
Query: 687 RQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYD 729
++ D ++ + ++ + ++ ++ +
Sbjct: 895 QKEHDLFRQFTEEMLRKDPDSTLTCDDAYTAFRDWTSANSPHG 937
Score = 110 bits (276), Expect = 8e-22, Method: Composition-based stats.
Identities = 41/328 (12%), Positives = 94/328 (28%), Gaps = 37/328 (11%)
Query: 177 FQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAV 236
+ + + K + W + + + +T + + W+ V +
Sbjct: 272 LADYSAVMAKLDVARQRKPAWNTDATEAHRLKRVTELTVMLTADLAD-DRQTWLNVGFCL 330
Query: 237 HHETRGSSKGKEIARRWSKQGSTYDEENFNYKWD---TFDFEEIGDTAKKRSTFTSLFYH 293
+T GS++G ++ +SK+ DE+ W+ + G Y
Sbjct: 331 WQQTSGSAEGYKVWLSFSKKSDKCDEDECWTIWNNQMRPNSFTEGTLVYLAQKHNPGAYL 390
Query: 294 H---------GKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNN---- 340
+ + +A D Y K Y D W + ++
Sbjct: 391 NWLQVKSTPVNDIGTNVAMAKIMWDYYGHQFVCCGGKTQTWYRFDGLTWVESNQGTDLRS 450
Query: 341 -VYIWSLTLDKITASIMNFLVSMK----------EDVFDLSEEPEDNNKNSKSPRFWFNT 389
+ L ++ ++ + + K +D D + + +D+N R +
Sbjct: 451 LISAEGGPLRRLLMRQLDAVTAAKARGGRDSGNEDDEEDSATDEDDSNPWDSELRRLDSE 510
Query: 390 DYRRQNVEENSKAKSTAQSLEAGSIFSITSDLL---------DSSSRFLGEQDGILDLET 440
+ K + ++ ++L DS +G+ D
Sbjct: 511 VLDAMVKRLRNNLKGIEMTGVKNNVLRECTELFYQPEFGDVIDSDPLLFAFANGVYDFRE 570
Query: 441 GQKVKPTKELYITKSTGTPFVEGEPSQE 468
G E +++ FV P +
Sbjct: 571 GCLRDGRPEDKLSRRAPVDFVMFGPIPK 598
>gi|229551169|ref|ZP_04439894.1| DNA primase [Lactobacillus rhamnosus LMS2-1]
gi|229315461|gb|EEN81434.1| DNA primase [Lactobacillus rhamnosus LMS2-1]
Length = 463
Score = 206 bits (523), Expect = 2e-50, Method: Composition-based stats.
Identities = 76/453 (16%), Positives = 157/453 (34%), Gaps = 36/453 (7%)
Query: 332 AWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDY 391
W D+N ++ K+ I+ ++ D + + + D
Sbjct: 25 EWIFYDENGNR--KVSATKLGQEIIKENPMLRLDTLSQGARFDKATGTWRLDKLSEFLDT 82
Query: 392 RRQNVEENSKAKSTAQSLEAGSIFSIT---SDLLD-----SSSRFLGEQDGILDLETGQK 443
E+ S + E I ++++ + + +G +L T
Sbjct: 83 IITEKLESVGKWSQGKLSEVKHYVLIKVYHPEMIESPFEHADPNLITFANGTYNLVTDTL 142
Query: 444 VKPTKELYITKSTGTPFVEGEPSQEFL---DLVSGYFESEEVMDYFTRCVGMALL-GGNK 499
E YI + P+ S + L D ++ ++ +G +
Sbjct: 143 QPHRPEDYILQ--NHPYDLKMKSGKDLKTVDWLAHLTGDPISANFLMEFIGYCFYHRYSP 200
Query: 500 AQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGS 559
Q I ++G G +GK+T + +K + V N D+ G +L
Sbjct: 201 FQALIILQGTGQNGKTTFIEFVKQILDKRNVSNVALQDLANKDNRFTGS------QLYQK 254
Query: 560 RIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNP 619
+ + ++ +++ +IK +TG D + A + +S + NK +
Sbjct: 255 EVNMFADLDDSFLKTTGQIKALTGDDTIFAEFKGKDGFSFMNFA-KLIFSANKLPKFSDF 313
Query: 620 DDAWWRRYIVIPFDKPIANRDASFAQKLETKYT-LEAKKW---FLKGVKAYISKGLDVDI 675
+ RR V+PF K I D +F ++ + E + L+ K I +
Sbjct: 314 TSGFIRRLYVVPFPKKI---DNNFKKEFDLNQIYDEIPAFSYQCLRAFKRAIDRDSLSKS 370
Query: 676 PEVCLKAKEEERQGTDTYQAWIDDCC--DIGENLWEESHSLAKSYSEYREQELNYDRKRI 733
P + AKE+ + +D +I+D C ++ N + S ++ K+Y +Y + K
Sbjct: 371 P-SMIAAKEQWLKDSDNIARFIEDRCRIELDTNGGDSSRNIYKAYQDYC---WEENIKPF 426
Query: 734 STRTVTLNLKQKGFIGGIKREKIEKEWKSKRII 766
S T L+ +G + + W+ +
Sbjct: 427 SQPEFTRRLEAQGIPRKKVQFNNTRIWRYLHLF 459
>gi|15789518|ref|NP_279342.1| hypothetical protein VNG0215C [Halobacterium sp. NRC-1]
gi|10579860|gb|AAG18822.1| conserved hypothetical protein [Halobacterium sp. NRC-1]
Length = 857
Score = 205 bits (521), Expect = 3e-50, Method: Composition-based stats.
Identities = 119/712 (16%), Positives = 243/712 (34%), Gaps = 121/712 (16%)
Query: 164 LLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYN 223
+ + ++LF+ +QEI S K+ + + +I LS +
Sbjct: 180 VSGADPTQFLFEAYQEINGEA--PSLSSSTGKSGDYDGDEWLDKSDIEDALSHVNPD--- 234
Query: 224 GSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYD---EENFNYKWDTFD------- 273
+DEW+ + AVH GS+ GK + +WSK GS +D E N WD+
Sbjct: 235 CGYDEWLKLGFAVHDWDSGST-GKRLFEQWSKGGSKWDNQAERNIQDIWDSASEGQGVTV 293
Query: 274 ------FEEIGDTAKKRSTFTSLFYHHGKLIP----------------------KGLLAS 305
++ G T RS T +G P +G AS
Sbjct: 294 GTLIHYAKDGGWTVPTRSNPTGQSQENGHTKPLVEAIDSSWFDLDSKTVTVQSVEGYTAS 353
Query: 306 RFSDAYNK--------------AMFSIYKKGHFLYTADTKAWYKKDKNN---VYIWSLTL 348
D + K A+ G FL W ++ ++ L+
Sbjct: 354 ELVDVFQKSGNILEACGHEAISAIGESDGGGEFL-DDSGNGWTVEEGRKNPYAHLEPLSN 412
Query: 349 DKITASIMNFLVSM------KEDVFDLSEEPEDNNKNSKSPRFW-------FNTDYRRQN 395
+I + + L + K +++ ++ R W + + + R+
Sbjct: 413 QEIKNTALAELPTHRVAYLPKREIWLWCDDGVWKPNGDGWVRQWLDEYLGPYYSGHIRRE 472
Query: 396 VEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQ-KVKPTKELYITK 454
V + +A+S + G + Q+G++DL+ G+ + +I
Sbjct: 473 VMDQLQARSQVEEQRFGGG----------PPGQIAAQNGLIDLDAGEIMREIQPSDHIRW 522
Query: 455 STGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLG-GNKAQRFIHIRGVGGSG 513
+ T + +++ + + E+ + + +G L K ++ + + G +G
Sbjct: 523 TLATEYDPEADCRKWREFLGEVVEASD-IPLLQEYIGYCLRHWDVKRKKALMLLGPTDAG 581
Query: 514 KSTLMNLIKYAFG--NQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEND 571
KS +++I+ FG + ++ + + N RL+ + + S+ +
Sbjct: 582 KSVFVDVIEALFGGEDSAATSSTSVQYLANERWGP-------ARLVNTALNTRSDLGKGS 634
Query: 572 EINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIP 631
N K+K++ GD + A + P + N+ D+A+W R++ +
Sbjct: 635 IENTGKVKELIAGDSLDAERKRKPVFQFKP-TAKHIFAANRAPNRSVDDEAFWNRWLTVV 693
Query: 632 FDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQG 689
F + I + ++L + W ++G + +G + P +E+ +
Sbjct: 694 FPQAIPRSEQVDDLDEQLLEEL-PGIFNWAIEGYQRLEEQGHFTNQPLPYQN-REKWERY 751
Query: 690 TDTYQAWIDDCCDIGENLWEESHS------LAKSYSEYREQELNYDRKRISTRTVTLNLK 743
++ W D C + + + S SY Y Q + T LK
Sbjct: 752 GNSIAQWFDRCTEEQPDGFTPKESTDDALGAYDSYVAYARQNGLEVE---TDSKFTSELK 808
Query: 744 QKGFIGGIKREKIEKEWKSKRIIKGLKLKPAF-------ESVDDNSNIIDFK 788
++ G+ + + E G L E + N+ I F+
Sbjct: 809 RR---DGVSKSRRRIEGNRTYGYSGFVLTDDAPGGSDQQEDTNRNAGIGSFE 857
>gi|168702227|ref|ZP_02734504.1| Phage/plasmid primase P4-like protein [Gemmata obscuriglobus UQM
2246]
Length = 913
Score = 205 bits (521), Expect = 3e-50, Method: Composition-based stats.
Identities = 76/503 (15%), Positives = 164/503 (32%), Gaps = 55/503 (10%)
Query: 294 HGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITA 353
H + + L +IY +G W++ + +
Sbjct: 408 HEEFMDPHRLGRLLVPRQGDLPTAIYHRG---------EWWEWRAGKYVTVADNDFDLRG 458
Query: 354 SIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAG- 412
N L + E ++ ++ + D R+ + A ++ LEA
Sbjct: 459 W--NILRAECEAAHLVAVAAWEHGGRQGARPAVPKLDTRK--ISNAVTAAASMVHLEADT 514
Query: 413 ---SIFSITSDLLDSSSR---------FLGEQDGILD----LETG--QKVKPTKELYITK 454
++ S + R ++ +G+LD L +G V T +
Sbjct: 515 TWPAMLSADPPRPNRIPRVRPAAEQREYIACANGLLDVAELLASGAPTLVPATPLYFTPA 574
Query: 455 STGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSG 513
+ F F + E G L + Q+F + G G +G
Sbjct: 575 AIPVAFDASAKCPRFDSFLERVTDGDRERQLILQEIAGYLLRFDTRFQQFFVLTGEGSNG 634
Query: 514 KSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI 573
KST + +++ G+ + + + +L +G + ++E E D++
Sbjct: 635 KSTFLAVLRALIGDHNYASVPLEEFGE---------RFALGVTLGKLVNAVAEVGELDKV 685
Query: 574 NAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFD 633
AK+K G D M+ S P + + N + + WRRY ++PF
Sbjct: 686 AEAKLKSFVGADLMSFDRKNKAPISARP-TARLLLSTNTLPRFADRSEGVWRRYQLVPFT 744
Query: 634 KPIANRDA-----SFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQ 688
I + + + + W L G+ +G +V AK E R+
Sbjct: 745 TVITDGEKVHGMSDPGWWIASGELPGVLNWALAGLHRLYQQG-GFSSSKVGETAKAEHRE 803
Query: 689 GTDTYQAWIDDCCDIGE-NLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGF 747
+ ++ +++D + + + + + +Y E+ RK +S ++ +
Sbjct: 804 ICNPHRQFLEDHLQLADADKTVRTTEVYAAYVEWCRA-----RKFLSLNDANFGVELRKV 858
Query: 748 IGGIKREKIEKEWKSKRIIKGLK 770
G+ + + +++ G+
Sbjct: 859 FKGVTKVRKRVGRDREQVYAGVS 881
>gi|255693185|ref|ZP_05416860.1| phage/plasmid primase, P4 family domain protein [Bacteroides
finegoldii DSM 17565]
gi|260621078|gb|EEX43949.1| phage/plasmid primase, P4 family domain protein [Bacteroides
finegoldii DSM 17565]
Length = 559
Score = 205 bits (521), Expect = 3e-50, Method: Composition-based stats.
Identities = 51/307 (16%), Positives = 105/307 (34%), Gaps = 16/307 (5%)
Query: 445 KPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFI 504
+ + + Y + F + ++V + VG L K ++ +
Sbjct: 168 EHSADDYFFYVLPYEYAPKAMCPMFQKFLDEVLPEKDVQEVLQEFVGCCLNPFIKLEKVL 227
Query: 505 HIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVII 564
G G +GKS I G V + + + ++ I + +
Sbjct: 228 CCIGTGANGKSVFFETIMAVLGENNVSSYNINSLCDDKGYSR-------IMIKNKLLNYS 280
Query: 565 SETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWW 624
S+ N KQ+ G+ + AR Y + N + +
Sbjct: 281 SDFN-GKIWGNGIFKQLASGEPVEARQLYQDP-EMVKGYARLAFNCNSIPTSSDSSYGFR 338
Query: 625 RRYIVIPFDKPIANR--DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKA 682
RR ++IPF I+ D A+KL ++ W ++G++ +I G +
Sbjct: 339 RRLLMIPFGMKISKEKADPDLARKLRSEL-PGILLWAIEGLQRFIRNGKKLSSSPTIEAL 397
Query: 683 KEEERQGTDTYQAWI-DDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLN 741
++E ++ TD+ ++ G+ ++ L Y EY + + S +
Sbjct: 398 EQEYKEDTDSVVMFLGSKHYIPGDKDFKRLSELYNEYKEYCKSN---SIRFESKSNLKNK 454
Query: 742 LKQKGFI 748
LK++G+
Sbjct: 455 LKEEGYT 461
>gi|239630759|ref|ZP_04673790.1| DNA primase [Lactobacillus paracasei subsp. paracasei 8700:2]
gi|239527042|gb|EEQ66043.1| DNA primase [Lactobacillus paracasei subsp. paracasei 8700:2]
Length = 463
Score = 204 bits (519), Expect = 4e-50, Method: Composition-based stats.
Identities = 61/354 (17%), Positives = 127/354 (35%), Gaps = 28/354 (7%)
Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFL---DLVSGYFESE 480
+ + +G +L T E YI + P+ S++ L D ++
Sbjct: 123 ADPNLITFTNGTYNLVTDTLQPHRPEDYILQ--NHPYDLKMKSEKDLKTVDWLAHLTGDP 180
Query: 481 EVMDYFTRCVGMALL-GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539
++ +G + Q ++G G +GK+T + +K G + V N D+
Sbjct: 181 ISANFLMEFIGYCFYHRYSPFQALTILQGNGQNGKTTFIEFVKQILGKRNVSNVALQDLA 240
Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599
G +L + ++ +++ ++K +TG D A + +S
Sbjct: 241 NKDNRFTGS------QLYQKEANMFADLDDSFLKTTGQLKALTGDDTTFAEFKGKDGFSF 294
Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYT-LEAKKW 658
+ NK + + RR V+PF + I D +F ++ + E +
Sbjct: 295 MNFA-KLIFSANKLPKFSDFTSGFIRRLYVVPFPQKI---DNNFKKEFDLNQIYDEIPAF 350
Query: 659 FLKGVKAYI----SKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLW--EESH 712
+ ++A+ GL + AKE + +D +I+D C I + + S
Sbjct: 351 SYQCLRAFKCAIDRDGLSKSP--SMIAAKESWLRDSDNIARFIEDRCRIESDTKGGDSSR 408
Query: 713 SLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRII 766
++ K+Y +Y + K S T L+ +G + + + +
Sbjct: 409 NIYKAYQDYC---WEENIKPFSQPEFTRRLEAQGIPRKKVQFNNARTSRYLHLF 459
>gi|255263132|ref|ZP_05342474.1| conserved hypothetical protein [Thalassiobium sp. R2A62]
gi|255105467|gb|EET48141.1| conserved hypothetical protein [Thalassiobium sp. R2A62]
Length = 295
Score = 204 bits (519), Expect = 4e-50, Method: Composition-based stats.
Identities = 53/285 (18%), Positives = 112/285 (39%), Gaps = 25/285 (8%)
Query: 489 CVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGK 548
+G L+ + + F+ + G G +GKS + +++ G + V + ++
Sbjct: 26 LMGYTLMSHARHELFVMLIGPGANGKSVFLAILEGLVGEKNVAGVQPANFSDKFQR---- 81
Query: 549 ANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFI 608
L I++E + + I A++K +T G+ T + + + P S T +
Sbjct: 82 -----AHLHKKLANIVTELKQGEMIADAELKGITSGEPSTVEHKHRDPFVLRPFS-TCWF 135
Query: 609 VPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
N R+ DA +RR +++ F++ +D KL T+ L +
Sbjct: 136 GTNYMPRTRDFSDALFRRAVILQFNRTFTKEEQDPLLKDKLLTEL-PGILNLALDAYDSA 194
Query: 667 ISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQEL 726
+ P AK+E R D ++DD C + ++ + ++Y + +
Sbjct: 195 LVSA--FTQPGSTETAKQEWRLEADQVAQFVDDVCKRDPDACSKASKVFEAYLNWAQGNG 252
Query: 727 NYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771
++ +S R + L + GF + K+ R + GL++
Sbjct: 253 --IKQTMSQRGLRDRLTRLGF--------GHRRDKTARYVTGLRV 287
>gi|21226253|ref|NP_632175.1| hypothetical protein MM_0151 [Methanosarcina mazei Go1]
gi|20904491|gb|AAM29847.1| conserved protein [Methanosarcina mazei Go1]
Length = 628
Score = 204 bits (519), Expect = 5e-50, Method: Composition-based stats.
Identities = 51/323 (15%), Positives = 118/323 (36%), Gaps = 15/323 (4%)
Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ-EFLDLVSGYFES-EEVMD 484
+ +G+LD+ T + + E + + + +F+++++ F+ EE +
Sbjct: 227 NLIPVGNGVLDINTMELSDYSPETVLLTKFPRDYNPSAATPSKFMEMLNTTFDGSEEQIK 286
Query: 485 YFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544
G L + + G G +GK+TL+N++ G + + +
Sbjct: 287 LVQEMFGYCFLRSYFLEVIFFLIGNGRNGKTTLLNILGALLGGEESGHISNLSF---KDL 343
Query: 545 EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604
K L L G I +T ++ IK++TG D + AR Y ++++ +
Sbjct: 344 SEPKNENMLCDLYGRYANICGDTGKHKIKETDYIKKVTGNDFVRARKLYKDSFNFKSFA- 402
Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN---RDASFAQKLE--TKYTLEAKKWF 659
+ N+ V + D + RR +I F+ + + + ++ + W
Sbjct: 403 KVILAFNQLPEVDDFSDGFKRRIRIIEFNHKFEDGAGANKNIEAEITGDEEEMEGIFLWA 462
Query: 660 LKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYS 719
++G+K + + E + ++ ++ +C + L + Y
Sbjct: 463 MEGLKRILENN-SFSDKRSIVSRGMEYARKSNPMHYFVRECIVESPGHFVNKADLIEKYV 521
Query: 720 EYREQELNYDRKRISTRTVTLNL 742
EY E +++ + L
Sbjct: 522 EYAEYN---KMPQLTPQAFKKGL 541
>gi|257870766|ref|ZP_05650419.1| DNA primase [Enterococcus gallinarum EG2]
gi|257804930|gb|EEV33752.1| DNA primase [Enterococcus gallinarum EG2]
Length = 477
Score = 204 bits (518), Expect = 6e-50, Method: Composition-based stats.
Identities = 50/347 (14%), Positives = 127/347 (36%), Gaps = 17/347 (4%)
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTG--TPFVEGEPSQEFLDLVSGYFESE 480
+S ++G +++TG+ + YI +S ++ ++ + E
Sbjct: 120 NSKPYLANFKNGTYNIKTGELKPHDTKDYILQSHDYVVDPKSNLKPEKAIEWLRDLTGDE 179
Query: 481 EVMDYFTRCVGMALLGGN-KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539
+ + +G Q ++G G +GKST ++ + G N ++
Sbjct: 180 KSAQHLMEIIGYCFYRSYAPFQTITILQGSGENGKSTFLDFLTKVIGKDNTSNMTLQELG 239
Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599
+ AG L + ++ + + +K +TGGD ++A + +
Sbjct: 240 NKQNRFAG------ANLFQKEANLFADVDSEFLKSTGLLKALTGGDRLSAEFKGKDHFMF 293
Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKK-W 658
+ N+ + + RR V+PFD I + + + +
Sbjct: 294 VNFA-KLIFSANELPAFNDFTHGFERRLYVVPFDCVIDESFKTKHDLNAIEKEIPLFATY 352
Query: 659 FLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWE--ESHSLAK 716
+ K + + ++ + + +AK++ + ++ +I++ C I E S + +
Sbjct: 353 CISMFKEALDR-KELTVSDKMNQAKDKWLKESNHIMRFIEEKCSIDMESSEGDSSKKIYE 411
Query: 717 SYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSK 763
Y ++ QE + +S + L++ G + + + + W+ +
Sbjct: 412 EYQKFCYQE---SLRELSQPKFSKQLEKMGIVKVKQSVRGTRLWRYR 455
>gi|322806854|emb|CBZ04424.1| hypothetical protein H04402_02617 [Clostridium botulinum H04402
065]
Length = 391
Score = 203 bits (517), Expect = 8e-50, Method: Composition-based stats.
Identities = 57/352 (16%), Positives = 126/352 (35%), Gaps = 27/352 (7%)
Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEV 482
++ +++ ++GI DLE + ++ I + S+ ++ + +++
Sbjct: 61 TNPKYITLENGIFDLENKKLLEFNSSHIIKNKISWSYNPNAYSETMDKTLNKICCKDKQL 120
Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542
+G L N+ + + G G +GKSTL+ ++ G + + + ++
Sbjct: 121 RLLIEEMIGYTLFRRNELGKAFILTGQGANGKSTLLEVLNELLGEENIASVSLEEL---- 176
Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602
+L G I + + + + K++ G+ + + +
Sbjct: 177 -----NHRFKTFQLEGKLANIGDDISNKYIEDNSTFKKLVTGEKVNVERKGRDPFDFKNY 231
Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFA----QKLETKYTLE-AKK 657
S N+ + + RR I IPF+ + +D + KL + +E K
Sbjct: 232 S-KLIFSANELPRINDLSGGLKRRLIFIPFNATFSKKDKDYDPFILDKLTSHEAMEYLLK 290
Query: 658 WFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKS 717
L+G+ + EVC + EE + +++D + E +
Sbjct: 291 LALEGLNRVLIN-HSFTHAEVCNRVWEEYEAINNPIVGFLED----NDIENEPVKEVYLR 345
Query: 718 YSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGL 769
YS + + K +S +K++G+ I K KR+ K L
Sbjct: 346 YSAWCSENG---LKSVSKPVFGREVKKQGYNSDT---VIRVNGKQKRVYKKL 391
>gi|67921707|ref|ZP_00515224.1| Phage/plasmid primase P4, C-terminal [Crocosphaera watsonii WH
8501]
gi|67856299|gb|EAM51541.1| Phage/plasmid primase P4, C-terminal [Crocosphaera watsonii WH
8501]
Length = 1013
Score = 203 bits (517), Expect = 8e-50, Method: Composition-based stats.
Identities = 85/510 (16%), Positives = 179/510 (35%), Gaps = 61/510 (11%)
Query: 310 AYNKAMFSIY----KKGHFLYTADTKAWYKKDKNNVYIW-SLTLDKITASIMNFLVSMKE 364
+N+ Y K +Y TK WY + IW ++ +++ +M L ++ +
Sbjct: 313 KWNEKRVCEYLADLYKDRLIYEEVTKDWYLYNAEKDGIWEQISKERLEQRLMLELDALID 372
Query: 365 DVFDLSEEPEDN------NKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSL--EAGSIFS 416
++ + + K+ + ++Q + + + ++L +
Sbjct: 373 KAQTITNQIIKAINAVKTSNRDKTEKGDIIEQLKQQLPKVSDYKFTFVEALGKRLSRVLL 432
Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY 476
+ +S + ++G+LDL+T + + + + Y T S + +
Sbjct: 433 VKEMATNSQQGLIPFRNGVLDLDTRELLPHSPQNYFTWSLPYDYNPLAQCNPIKQWLLEM 492
Query: 477 FESEE-VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535
E +E +++ + + G Q+F+ + G GGSGKSTL+ L G + ++
Sbjct: 493 MEGDESLVNLIRAYLHGIVTGRTDWQKFLALCGPGGSGKSTLIKLAIALVGFEN-VHVTD 551
Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595
DI++ E L R+VII+E + K+K +TGGD + Y
Sbjct: 552 LDILEKDKFETSN-------LKDKRLVIINEATSYKGVK--KLKALTGGDRLRFEQKYKQ 602
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLE------- 648
+ I N+ + + +RR I + ++ I +++ +KL
Sbjct: 603 ALASFYPDALVIITSNEPIKTGDYTSGLYRREIPLSMNRRIPDKE---QKKLIDHDRQNN 659
Query: 649 -----TKYTLEAKKWFL----KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD 699
+ W L + I + P + + T++ AW+++
Sbjct: 660 IIGEFAPHIPGLLNWVLEMDSEMATQIIKDPYN-YAPALLKSKLDN-LMDTNSIAAWLNE 717
Query: 700 CCDIGENLWE---------ESHSLAKSYSEYREQELNYDRKRISTRTVT---LNLKQKGF 747
ES Y+ Y + IS + L+L
Sbjct: 718 KIIYEPKYQTQVGCKSPLGESKEEIWLYASYCAYCASAGINTISLTRFSYLVLDLCNNQL 777
Query: 748 IGGIKREKIEKEWKSKRIIKGLKLKPAFES 777
I +++ K I+GLK++ +
Sbjct: 778 GLPIIKDR----NNVKTYIEGLKIRDHLDE 803
>gi|301063354|ref|ZP_07203893.1| phage/plasmid primase, P4 family, C-terminal domain protein [delta
proteobacterium NaphS2]
gi|300442517|gb|EFK06743.1| phage/plasmid primase, P4 family, C-terminal domain protein [delta
proteobacterium NaphS2]
Length = 820
Score = 202 bits (513), Expect = 2e-49, Method: Composition-based stats.
Identities = 65/361 (18%), Positives = 133/361 (36%), Gaps = 30/361 (8%)
Query: 419 SDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE 478
+ L+ + L +G+L +ET + + + F + +++ ++ F
Sbjct: 476 PEELEFNPMLLNIANGMLHVETMEIKPHSPDYNSRVQLPVSFRKDATCTRWIEAIAQIFS 535
Query: 479 SE-EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
+ D G AL I G G +GK + ++ G V + +
Sbjct: 536 DDLSKADVLQEFFGYALYPRILFPCCIFQIGQGRNGKGVVEKILCAMLGRANVSHVSLAR 595
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
+ +N P + + G + ET E ++ K++ GD + A+ Y
Sbjct: 596 MEENFGP---------VEIEGKLLNSCGET-EAKPLDVTNFKKIVAGDEIQAQRKYLPDV 645
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEA 655
+P + + N V+ DA++RR IV+ + + + D KL +
Sbjct: 646 KFTPIA-KHLVSMNAFPGVKEKTDAFFRRIIVLEYRQKFEGEDDDKRLVDKLLEEL-DGI 703
Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIG-----ENLWEE 710
KW L+G+K +++ ++ PE AKE R+ + A++ + C + N+
Sbjct: 704 FKWSLEGLKRVLAR-EEIASPEAVSIAKERFREKVNPVIAFVKEACMLDVDAIQTNVKVL 762
Query: 711 SHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLK 770
L ++Y + E+ + + + F KR +E + G+
Sbjct: 763 PADLYRAYGSWMEEA---KLRSLGKNNFYEQIL-LNFPHVKKRRDGTRE-----LFFGIG 813
Query: 771 L 771
L
Sbjct: 814 L 814
>gi|45686089|ref|YP_003852.1| D5 family NTPase [Ambystoma tigrinum virus]
gi|37722513|gb|AAP33258.1| D5 family NTPase [Ambystoma tigrinum stebbensi virus]
Length = 975
Score = 201 bits (512), Expect = 3e-49, Method: Composition-based stats.
Identities = 59/283 (20%), Positives = 106/283 (37%), Gaps = 22/283 (7%)
Query: 465 PSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524
P + L + F E +F R +GGN + + G G +GK+ L +
Sbjct: 661 PVAKLLAFFASVFPDEGTRRFFLRNAAAIFVGGNPDKVVLFWTGTGNNGKTVTQTLFEKM 720
Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRL-MGSRIVIISETNENDEINAAKIKQMTG 583
G + + + + P AG ANP + RL G R ++ E N ++ INA +K MTG
Sbjct: 721 LG-CFAVKMSTQTLTGKK-PSAGSANPEMARLGGGVRWAVMEEPNSDETINAGTLKSMTG 778
Query: 584 GDCMTARLNY--GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR-- 639
D AR Y G T E F ++ N +++ D A W R V+PF+
Sbjct: 779 NDSFFARDLYCAGKTTFEIKPMFKLHVICNALPGIKDADQATWNRVRVVPFESTFVTPGT 838
Query: 640 ------------DASFAQKLETKYTLEAKKWFLKGVKA-YISKGLDVDIPEVCLKAKEEE 686
D +KL+ W+L A ++ + P ++A
Sbjct: 839 TAPADSKYVFPADTDITRKLDR--LTAPLAWYLVYCWACIQNERVKYVPPPKVMEATMAY 896
Query: 687 RQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYD 729
++ D ++ + ++ + ++ ++ +
Sbjct: 897 QKEHDLFRQFTEEMLRKDLDSTLTCDDAYTAFRDWTSANSPHG 939
Score = 111 bits (278), Expect = 4e-22, Method: Composition-based stats.
Identities = 42/330 (12%), Positives = 97/330 (29%), Gaps = 39/330 (11%)
Query: 177 FQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAV 236
+ + + K + W + + + + +T + + + W+ V +
Sbjct: 272 LADYSAVMAKLDVARQRKPAWNIDATKAHRLKRVTELTAMLTADLAD-DRQTWLNVGFCL 330
Query: 237 HHETRGSSKGKEIARRWSKQGSTYDEENFNYKWD---TFDFEEIGDTAKKRSTFTSLFYH 293
+T GS++G ++ +SK+ DE+ W+ + G Y
Sbjct: 331 WQQTSGSAEGYKVWLSFSKKSDKCDEDECWTIWNNQMRPNSFTEGTLVYLAQKHNPGAYL 390
Query: 294 H---------GKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKN----- 339
+ + +A D Y K Y D W + ++
Sbjct: 391 NWLQVKSTPVNDIGTNVAMAKIMWDYYGHQFVCCGGKTQTWYRFDGLTWVESNQGTDLRS 450
Query: 340 ----NVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQN 395
L + ++ D + E+ E+N+ + ++++ RR +
Sbjct: 451 LISAEGGPLRRLLTRQLDAVTAAKARGGRDSGNEDEDDEENSATDEDDSNPWDSELRRLD 510
Query: 396 VE--------ENSKAKSTAQSLEAGSIFSITSDLL---------DSSSRFLGEQDGILDL 438
E + K + ++ ++L DS +G+ D
Sbjct: 511 SEVLDAMVKRLRNNLKGIEMTGIKNNVLRECAELFYQPEFGDVIDSDPLLFAFANGVYDF 570
Query: 439 ETGQKVKPTKELYITKSTGTPFVEGEPSQE 468
G E +++ FV P +
Sbjct: 571 REGCLRDGRPEDKLSRRAPVDFVMFGPIPK 600
>gi|329955099|ref|ZP_08296080.1| phage/plasmid primase, P4 family domain protein [Bacteroides clarus
YIT 12056]
gi|328526389|gb|EGF53404.1| phage/plasmid primase, P4 family domain protein [Bacteroides clarus
YIT 12056]
Length = 400
Score = 201 bits (511), Expect = 4e-49, Method: Composition-based stats.
Identities = 45/270 (16%), Positives = 101/270 (37%), Gaps = 12/270 (4%)
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEV 482
+ + +G L+L+TG+ + Y P+ Q F+ + ++
Sbjct: 125 EQDKEKINFLNGTLNLKTGRLEQHLYSDYFRYVLPYPYNPNATCQMFMKYLDRVLPDKDT 184
Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542
+G + + G G +GKS +++++ G + + + SD+
Sbjct: 185 QKVLAEYIGWIFTPLKLEKCL-FLYGSGKNGKSVFVDIVEALLGKENISHESLSDMCGEN 243
Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602
+ L G + S+ N + K++ G+ ++ R Y + + +
Sbjct: 244 GDRSR------ANLSGKLLNTCSDVAPNA-FSGDIFKRIASGEPISTRQLYKDVATLTDY 296
Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAKKWFL 660
+ N+ + + ++RR++++PF I D A+K+ + W L
Sbjct: 297 A-KMLFCLNELPKTNDKSNGYFRRFLIVPFKVQIPKPEVDPKLAEKIVSTELPGIMNWVL 355
Query: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGT 690
+G + I++ +C K EE R G+
Sbjct: 356 EGRERLITQS-GFTESSLCQKQLEEYRYGS 384
>gi|169826081|ref|YP_001696239.1| hypothetical protein Bsph_0484 [Lysinibacillus sphaericus C3-41]
gi|168990569|gb|ACA38109.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41]
Length = 656
Score = 201 bits (510), Expect = 5e-49, Method: Composition-based stats.
Identities = 63/358 (17%), Positives = 124/358 (34%), Gaps = 27/358 (7%)
Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ---EFLDLVSGYFESE 480
SS + + + D++ + + +IT F S F ++ +++
Sbjct: 317 SSKYLISFSNYVYDIKNEITLDHSSRYFITNKLNANFTIPLTSDSGIHFEKFLNTITQND 376
Query: 481 EVM-DYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539
V+ D G L + + G +GKS ++ L++Y G N
Sbjct: 377 SVLYDRLQELFGYVLSEIRDIKYIPILIGQKDTGKSVILKLLEYIIGEDNFSNISIDQF- 435
Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599
+ L L G R+ +E +E + +K+++G D +TAR Y +
Sbjct: 436 --------NNSVYLAELYGKRLNSCAEISELNLKRLDILKKLSGNDYVTARPMYSDPIKF 487
Query: 600 SPASFTPFIVPNKHLFVR--NPDDAWWRRYIVIPFDKPIAN--RDASFAQKLETKYTLEA 655
S N + + A+ R ++ PF+ PI +D KL +
Sbjct: 488 INQS-VLLFAGNNLPNIENLDSSSAFKERLLLFPFNNPIPKEHQDNELIDKLIAEIDY-I 545
Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLA 715
W +KG+ ++ + +++ + ++ C + L
Sbjct: 546 AHWSIKGIHRLLNNNFQFTTSFEIEDTFKPYL--SNSLEEFLLSECAYQTKYQIHTDDLY 603
Query: 716 KSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773
++Y Y E NY K IS ++ LK+ + + +K G+ LK
Sbjct: 604 QAYIVYCE---NYSFKIISKKSFIQILKK---QSNLSFRRFRMRGTNKYGFIGIGLKN 655
>gi|293569187|ref|ZP_06680491.1| phage/plasmid primase, P4 family protein [Enterococcus faecium
E1071]
gi|291588099|gb|EFF19943.1| phage/plasmid primase, P4 family protein [Enterococcus faecium
E1071]
Length = 468
Score = 201 bits (510), Expect = 5e-49, Method: Composition-based stats.
Identities = 59/355 (16%), Positives = 128/355 (36%), Gaps = 26/355 (7%)
Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEV 482
S + +G D TG+ ++ Y + + + FL ++ F +
Sbjct: 126 SDDYLVLT-NGTFDRRTGEIIESQSNHYAYFFSTVVYDSEKKCARFLQFLNEVFYSDQST 184
Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542
+ + G LL ++A F+ G G +GKS L L+ G ++ S
Sbjct: 185 IAFVQEWFGYVLLSSHQANAFLIGYGSGANGKSLLFALLAKLVGECNTSSSGISAFQSRF 244
Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602
E + + + +E++ N A +K +T G+ +T +
Sbjct: 245 GMEV---------MHNKLLNLATESDVNS-FETATLKAVTAGEPITLNRKGIKEITCILP 294
Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEAKKWFL 660
+ + N + + + RR +++PF + +D +K+ + + + L
Sbjct: 295 T-KFIFLMNHLPLITDSSYGFSRRLLILPFPRTFRPEEQDPFLLEKMTLELS-GILNFAL 352
Query: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSE 720
+G K I G I ++ +AKE+ + ES+ L +++ +
Sbjct: 353 EGAKRLIKNGYQFTISDLMNEAKEQFLGCVHPLSYFKAHYLSKNPTRKVESNLLFQTFQK 412
Query: 721 YREQELNYDRKRISTRTVTLNL----KQKGFIGGIKREKIEKEWKSKRIIKGLKL 771
+++ R+ + R+ L + +GF+ K+ K + G+ L
Sbjct: 413 MLKEKNWSARQYGTLRSFNKGLIELFEAEGFVISTKK------SNGKTYLSGIVL 461
>gi|170756489|ref|YP_001781751.1| phage primase [Clostridium botulinum B1 str. Okra]
gi|169121701|gb|ACA45537.1| phage primase, P4 family [Clostridium botulinum B1 str. Okra]
Length = 621
Score = 201 bits (510), Expect = 6e-49, Method: Composition-based stats.
Identities = 59/352 (16%), Positives = 125/352 (35%), Gaps = 27/352 (7%)
Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEV 482
++ +++ +GI DLE+ + ++ I + SQ + + +++
Sbjct: 291 ANPKYITLDNGIFDLESKKLLEFNSPYIIKNRIPWSYNPNAYSQTMDKTLDKICCKDKQL 350
Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542
+G L N+ + + G G +GKSTL+ ++ G + + + ++
Sbjct: 351 RLLIEEMIGYTLFRRNELGKAFILTGQGANGKSTLLEVLNELLGEENIASVSLEEL---- 406
Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602
+L G I + + + + K++ G+ + + +
Sbjct: 407 -----NHRFKTFQLEGKLANIGDDISNKYIEDNSTFKKLVTGEKVNVERKGRDPFDFKNY 461
Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFA----QKLETKYTLE-AKK 657
S N+ + + RR I IPF+ + +D + KL + +E K
Sbjct: 462 S-KLIFSANELPRINDLSGGLKRRLIFIPFNATFSKKDKDYDPFILDKLTSHEAMEYLLK 520
Query: 658 WFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKS 717
L+G+ + EVC + EE + +++D + E +
Sbjct: 521 LALQGLNRVLIN-HSFTHAEVCNQVWEEYEAINNPVVGFLED----NDIENEPVKEIYLR 575
Query: 718 YSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGL 769
YS + + K +S +K++G+ I K KRI K L
Sbjct: 576 YSAWCSENG---LKSVSKPVFGREVKKQGYNSD---SVIRVNGKQKRIYKKL 621
>gi|167044432|gb|ABZ09108.1| putative Poxvirus D5 protein-like protein [uncultured marine
crenarchaeote HF4000_APKG6D9]
Length = 435
Score = 200 bits (508), Expect = 8e-49, Method: Composition-based stats.
Identities = 59/361 (16%), Positives = 133/361 (36%), Gaps = 23/361 (6%)
Query: 421 LLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESE 480
D+ + ++GIL+L+T Q + + + ++F+ + E
Sbjct: 91 EFDNHENLVNLRNGILNLQTQQLSPHSHNFLFRIQLPITYDQNATCEQFIRFLEQCHPDE 150
Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540
+ LL ++ G G +GKST + +I+ G V N D+
Sbjct: 151 KNRITALEAFASTLLPNIHLEKMFMNVGSGANGKSTYLKVIEQFLGTDNVSNISIHDMES 210
Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600
+R +AG L+G I ++ + + A +K + D ++ + + ++
Sbjct: 211 DRFAKAG--------LVGKFANIYADISRRELPELASVKAVISSDSISVQRKGEHRFTMR 262
Query: 601 PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD------ASFAQKLETK-YTL 653
+ N+ + A +RR ++I +++ +++D + ++L T+
Sbjct: 263 -NTAKLIFSCNELPELGEDSHAVYRRLVLIEWNERFSHQDKHHKINPNLFKELTTEQELS 321
Query: 654 EAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHS 713
L+ + G + E LK + Q D ++D C + S
Sbjct: 322 GILNLLLQHTQKISKNG-KLTYDETALKLRGIWAQKADPIGTFLDSCVEQDFETKTSKAS 380
Query: 714 LAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773
+ +++ + + +K + + QK I+ E K+ R+ +G+K+
Sbjct: 381 IFQAFCSWCKSNKITPKK---QKQFNYKVSQK---FAIQDTIGRIENKTTRLWEGIKVVS 434
Query: 774 A 774
A
Sbjct: 435 A 435
>gi|168178720|ref|ZP_02613384.1| phage/plasmid primase, P4 family [Clostridium botulinum NCTC 2916]
gi|182670306|gb|EDT82280.1| phage/plasmid primase, P4 family [Clostridium botulinum NCTC 2916]
Length = 621
Score = 200 bits (508), Expect = 8e-49, Method: Composition-based stats.
Identities = 58/352 (16%), Positives = 125/352 (35%), Gaps = 27/352 (7%)
Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEV 482
++ +++ +GI DLE+ + ++ I + SQ + + +++
Sbjct: 291 ANPKYITLDNGIFDLESKKLLEFNSPYIIKNRIPWSYNPNAYSQTMDKTLDKICCKDKQL 350
Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542
+G L N+ + + G G +GKSTL+ ++ G + + + ++
Sbjct: 351 RLLIEEMIGYTLFRRNELGKAFILTGQGANGKSTLLEVLNELLGEENIASVSLEEL---- 406
Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602
+L G I + + + + K++ G+ + + +
Sbjct: 407 -----NHRFKTFQLEGKLANIGDDISNKYIEDNSTFKKLVTGEKVNVERKGRDPFDFKNY 461
Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFA----QKLETKYTLE-AKK 657
S N+ + + RR I IPF+ + +D + KL + +E K
Sbjct: 462 S-KLIFSANELPRINDLSGGLKRRLIFIPFNATFSKKDKDYDPFILDKLTSHEAMEYLLK 520
Query: 658 WFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKS 717
L+G+ + EVC + EE + +++D + E +
Sbjct: 521 LALEGLNRVLIN-HSFTHAEVCNRVWEEYEAINNPIVGFLED----NDIENEPVKEVYLR 575
Query: 718 YSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGL 769
YS + + K +S +K++G+ I K KR+ K L
Sbjct: 576 YSAWCSENG---LKSVSKPVFGREVKKQGYNSDT---VIRVNGKQKRVYKKL 621
>gi|254366072|ref|ZP_04982117.1| possible phiRv1 phage protein [Mycobacterium tuberculosis str.
Haarlem]
gi|134151585|gb|EBA43630.1| possible phiRv1 phage protein [Mycobacterium tuberculosis str.
Haarlem]
Length = 248
Score = 200 bits (508), Expect = 9e-49, Method: Composition-based stats.
Identities = 67/266 (25%), Positives = 110/266 (41%), Gaps = 22/266 (8%)
Query: 517 LMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAA 576
I+YA G+ Y AE M + L G R V +SE+ ++ + +
Sbjct: 2 FDKAIRYALGD-YACTAEPDLFMHRE----NAHPTGEMDLRGVRWVAVSESEKDRRLAES 56
Query: 577 KIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI 636
IK++TGGD + AR + +P S TP ++ N V D A WRR V+PF+ I
Sbjct: 57 TIKRLTGGDTIRARKMRQDFVEFTP-SHTPLLITNHLPRVPGDDTAIWRRIRVVPFEVVI 115
Query: 637 A--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQ 694
+D +L+ + W + G Y GL P+ L A R+ +DT +
Sbjct: 116 PADEQDRELDARLQLEA-DSILSWAVAGWSDYQRIGL--SQPDAVLAATSNYREDSDTIK 172
Query: 695 AWIDDCCDI-GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKR 753
+IDD C L + L +++ +R QE IS + +L G+
Sbjct: 173 RFIDDECVTSSPVLKATTTHLFEAWQRWRVQEG---VPEISRKAFGQSLDTHGYP----- 224
Query: 754 EKIEKEWKSKRIIKGLKLKPAFESVD 779
+ + + R G+ ++ A + D
Sbjct: 225 --VTDKARDGRWRAGIAVRGADDFDD 248
>gi|255693187|ref|ZP_05416862.1| putative primase [Bacteroides finegoldii DSM 17565]
gi|260621080|gb|EEX43951.1| putative primase [Bacteroides finegoldii DSM 17565]
Length = 400
Score = 200 bits (508), Expect = 1e-48, Method: Composition-based stats.
Identities = 49/310 (15%), Positives = 111/310 (35%), Gaps = 18/310 (5%)
Query: 389 TDYRRQNVEENSKAKSTAQSLEAGSIF------SITSDLLDSSSRFLGEQDGILDLETGQ 442
+ R+ + + A E ++ ++ + Q+G +L+TG+
Sbjct: 85 KIFLREALGRMTNNMVEASQREVVEGLFKQFPYTVMGLAVEQDKEKINFQNGTFNLKTGR 144
Query: 443 KVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQR 502
+ Y P+ Q F+ + ++ +G +
Sbjct: 145 LEQHLYLDYFRYVLPYPYNLNATCQMFMKYLDRVLPDKDAQKVLAEYIGWIFTPLKLEKV 204
Query: 503 FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIV 562
+ G G +GKS +++++ G + + + SD+ + L G +
Sbjct: 205 L-FLYGSGKNGKSVFVDIVEALLGKENISHESLSDMCGENGDRSR------ANLSGKLLN 257
Query: 563 IISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDA 622
S+ N + K++ G+ ++ R Y + + + + N+ + +
Sbjct: 258 TCSDVAPNA-FSGDIFKRIASGEPISTRQLYKDVATLTDYA-KMLFCLNELPRTNDKSNG 315
Query: 623 WWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCL 680
++RR++++PF I D A+K+ + W L+G K I++ +C
Sbjct: 316 YFRRFLIVPFKVQIPKSEVDPKLAEKIVSTELPGIMNWVLEGRKRLITQS-GFTESSLCQ 374
Query: 681 KAKEEERQGT 690
K EE R G+
Sbjct: 375 KQLEEYRYGS 384
>gi|167764655|ref|ZP_02436776.1| hypothetical protein BACSTE_03045 [Bacteroides stercoris ATCC
43183]
gi|167697324|gb|EDS13903.1| hypothetical protein BACSTE_03045 [Bacteroides stercoris ATCC
43183]
Length = 480
Score = 199 bits (505), Expect = 2e-48, Method: Composition-based stats.
Identities = 59/375 (15%), Positives = 133/375 (35%), Gaps = 28/375 (7%)
Query: 387 FNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETG--QKV 444
+ + R E + +S + +E ++ + +G + +
Sbjct: 93 YKAKHHRFGEELYKQFRSVVKDMETQ----------NTDVVKINCDNGTVVFGANFVELR 142
Query: 445 KPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRF 503
K + + EF +++ +++ + Q+
Sbjct: 143 PFDKRDCFFYKLNYSYKPDATAPEFQRVLNEALPLDGQMI--LQEYIASIFFPRFNHQKA 200
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVI 563
+ + G GG GKS ++N+I A G V+ + ++ L + I
Sbjct: 201 LLLYGHGGEGKSLIINIISAALGRDNVVERSVESLCAEESR-------TVADLENKLLNI 253
Query: 564 ISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAW 623
E + N + K++ + MTA+ Y + Y+ + + N+ +A+
Sbjct: 254 CYEM--GSKFNISNFKRLVSKEPMTAKRLYMDPYTIYDYA-SLLFACNELPKNIEYTNAY 310
Query: 624 WRRYIVIPF--DKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLK 681
+RR +++PF P+ +D + +++ W +KG + +++G E+ +
Sbjct: 311 FRRLMILPFLNQIPVEKQDRTLGERVIQNELSGILNWIIKGAERLLAQG-CFSKSELVDR 369
Query: 682 AKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLN 741
A E R D+ ++IDD ++ +L + Y + S +T +
Sbjct: 370 ALAEYRVDADSVASFIDDSNYEKSTENKDCMALKYLFEGYMNYCSESNCHACSRKTFSSR 429
Query: 742 LKQKGFIGGIKREKI 756
LK GF K + +
Sbjct: 430 LKGLGFQLVRKSQGM 444
>gi|323485263|ref|ZP_08090613.1| phage/plasmid primase [Clostridium symbiosum WAL-14163]
gi|323401441|gb|EGA93789.1| phage/plasmid primase [Clostridium symbiosum WAL-14163]
Length = 625
Score = 198 bits (504), Expect = 3e-48, Method: Composition-based stats.
Identities = 51/366 (13%), Positives = 127/366 (34%), Gaps = 26/366 (7%)
Query: 401 KAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPF 460
K + L+ + + D++ + +G+ DL TG+ + ++ IT +
Sbjct: 270 KKMQRREVLDYMELIVDEKEQSDAN--LIAFNNGVYDLVTGELKPFSTDIVITNKIPWDY 327
Query: 461 VEGEPSQEFLDLVSGY-FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMN 519
S+ ++ + C+G N+ + + G +GKST ++
Sbjct: 328 KPDAYSELADSTLNKLACGDAAIRALLEECIGYCFYRRNELGKAFILTGDKSNGKSTFLD 387
Query: 520 LIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN--DEINAAK 577
+K G++ + + ++ + G I + ++ +
Sbjct: 388 CVKAILGDRNISALDLKELGDRFNTS---------MMFGKLANIGDDIGDDFLQGSQVSV 438
Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637
K++ G+ + A + + +P N +++ A RR ++IPF+ +
Sbjct: 439 FKKIVTGNRIKAERKGQDPFEFNPF-IKLLFSANDIPRMKDKTGAVLRRLVIIPFNATFS 497
Query: 638 NRDASFAQ----KLETKYTLEAK-KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDT 692
+ KL + ++E + ++G+K I + E + +
Sbjct: 498 KDSPDYDPFIKYKLIQQESVEYFIRLGVEGLKRIIIND-GFTKSDKVQNQLTEYEEENNP 556
Query: 693 YQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK-GFIGGI 751
A+I+D + E + + K Y + + +S + + ++ GF
Sbjct: 557 ILAFIND-TGVDMIENEPTADVYKRYQVFCADN---AMQPMSNIVFSKQINKRLGFRVIQ 612
Query: 752 KREKIE 757
K+ +
Sbjct: 613 KKVNNK 618
>gi|167462196|ref|ZP_02327285.1| phage / plasmid primase, P4 family protein [Paenibacillus larvae
subsp. larvae BRL-230010]
Length = 582
Score = 197 bits (501), Expect = 5e-48, Method: Composition-based stats.
Identities = 58/329 (17%), Positives = 128/329 (38%), Gaps = 25/329 (7%)
Query: 405 TAQSLEAGSIFSITSDLLDSSS-RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEG 463
A+ E + + + ++S+ + ++GI +LE + + ++ I +
Sbjct: 270 AAKRKETTAYLELIVEKMNSAPVNLIALENGIYNLEDDTLDEFSPDIIIKNKIPVTYDPD 329
Query: 464 ---EPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNL 520
E + + LD +S E+ +G LL N+ + + G G +GKSTL+++
Sbjct: 330 VYDEATDKVLDKIS--CHDAELRALLEEMIGYLLLRRNELGKCFILTGSGSNGKSTLLDM 387
Query: 521 IKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQ 580
+K G + + +I + G + + + N A K+
Sbjct: 388 LKNFLGPENYSSLSLDEI---------GHRFKTAEVFGKLANLGDDISSQYIDNNAVFKK 438
Query: 581 MTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD 640
+ G+ + + + + + N+ + + D RR I+IPF+ ++ D
Sbjct: 439 LVTGETVNVERKGKDPFEFNNYA-KLIFSANQLPRINDTTDGLMRRLIIIPFNAKFSSAD 497
Query: 641 ASFAQKLETKYTLE-----AKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQA 695
A F ++ K + + LKG+K +S +P++ + E + + A
Sbjct: 498 ADFDPFIKDKLLTDNAMKYLLQIALKGLKRVLSN-KRFTMPDIIKRELAEYEKMNNPVMA 556
Query: 696 WIDDCCDIGENLWEESHSLAKSYSEYREQ 724
+ID+ + E + + SYS + +
Sbjct: 557 FIDEG---RKVENETTKEVYLSYSAWCYE 582
>gi|126659986|ref|ZP_01731109.1| hypothetical protein CY0110_01600 [Cyanothece sp. CCY0110]
gi|126618751|gb|EAZ89497.1| hypothetical protein CY0110_01600 [Cyanothece sp. CCY0110]
Length = 1031
Score = 197 bits (501), Expect = 5e-48, Method: Composition-based stats.
Identities = 89/514 (17%), Positives = 169/514 (32%), Gaps = 69/514 (13%)
Query: 308 SDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLT---------------LDKIT 352
++ K ++ +TK WY IW + LD++
Sbjct: 321 NEKGVVKYLVELYKDRLIFDKETKEWYLYSAEIEGIWKIISTEELEQRILLEFTHLDQVV 380
Query: 353 ASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAG 412
I + + + V + S ++ + + ++ S K ++ L
Sbjct: 381 EDIRSQIGKAIKAVKESSRSNKEKTEIIGQLKAQTPKEFDYTIRLVQSIGKHLSRKLLTP 440
Query: 413 SIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDL 472
+ S + + ++G+LD+ET + + Y+T F
Sbjct: 441 QMQSHSQ------KGLIPFRNGVLDIETKELWPHSPTNYLTWCLPYDFNPLASCNPIKQW 494
Query: 473 VSGYFESEEVMDYFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVI 531
+ E + + R + G Q+F+ + G GGSGKSTL L G + V
Sbjct: 495 LLEMMEGDATLVNLIRAYLHGIVTGRADWQKFLALCGPGGSGKSTLTKLAIALVGAENVH 554
Query: 532 NAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARL 591
+ + +++ + R+VII+E + K+K +TGGD +
Sbjct: 555 VTDLDILEKDK--------FETANIKDKRLVIINEATSYKGVK--KLKALTGGDRLRFEQ 604
Query: 592 NYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLE--- 648
Y + I N+ + + +RR I + ++ IA RD +KL
Sbjct: 605 KYKQALASFYPDALVIITSNEPIKTGDHTSGLYRREIPLTMNRRIAERD---QKKLIDHD 661
Query: 649 ---------TKYTLEAKKWFLKGVKAYISKGLDVDIPEVC--LKAKEEERQGTDTYQAWI 697
Y W L+ ++ + + LK+K E T++ AW+
Sbjct: 662 RDNNLTGEFAPYIPGLLNWVLEMDSEQATQIIKDPLNYAVGLLKSKLENLIDTNSIAAWL 721
Query: 698 DDCCDIGENLWE---------ESHSLAKSYSEYREQELNYDRKRISTRTVTLNL-----K 743
++ + ES Y+ Y + IS + L
Sbjct: 722 NEKITYIDGYETQIGCKSPLGESKEQIWLYANYCKYCSLSGINTISLTRFSYLLLDLCNN 781
Query: 744 QKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFES 777
Q GF R++ I+GLK++ +
Sbjct: 782 QLGFTIKKGRDRK------GAFIQGLKIRDHLDE 809
>gi|291548659|emb|CBL24921.1| phage/plasmid primase, P4 family, C-terminal domain [Ruminococcus
torques L2-14]
Length = 625
Score = 197 bits (501), Expect = 6e-48, Method: Composition-based stats.
Identities = 51/366 (13%), Positives = 127/366 (34%), Gaps = 26/366 (7%)
Query: 401 KAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPF 460
K + L+ + + D++ + +GI DL TG+ + ++ IT +
Sbjct: 270 KKMQRREVLDYMELIVDEKEQSDAN--LIAFNNGIYDLVTGELKPFSTDIVITNKIPWDY 327
Query: 461 VEGEPSQEFLDLVSGY-FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMN 519
S+ ++ + C+G N+ + + G +GKST ++
Sbjct: 328 KPDAYSELADSTLNKLACGDAAIRALLEECIGYCFYRRNELGKAFILTGDKSNGKSTFLD 387
Query: 520 LIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN--DEINAAK 577
+K G++ + + ++ + G I + ++ +
Sbjct: 388 CVKAILGDRNISALDLKELGDRFNTS---------MMFGKLANIGDDIGDDFLQGSQVSV 438
Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637
K++ G+ + A + + +P N +++ A RR ++IPF+ +
Sbjct: 439 FKKIVTGNRIKAERKGQDPFEFNPF-IKLLFSANDIPRMKDKTGAVLRRLVIIPFNATFS 497
Query: 638 NRDASFAQKLETKYTL--EAKKWF---LKGVKAYISKGLDVDIPEVCLKAKEEERQGTDT 692
D + ++ + T + ++G+K + + +E Q +
Sbjct: 498 KDDPDYRPFIKYELTQQDSIEYLIRLGVEGLKRVVINN-GFSKSDKVQNQLDEYEQENNP 556
Query: 693 YQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK-GFIGGI 751
A+I+D + E + + K Y + + +S + + ++ GF
Sbjct: 557 ILAFIND-TGVDMIENEPTADVYKRYQVFCADN---AMQPMSNIVFSKQINKRLGFRVIQ 612
Query: 752 KREKIE 757
K+ +
Sbjct: 613 KKVNNK 618
>gi|297569229|ref|YP_003690573.1| phage/plasmid primase, P4 family [Desulfurivibrio alkaliphilus
AHT2]
gi|296925144|gb|ADH85954.1| phage/plasmid primase, P4 family [Desulfurivibrio alkaliphilus
AHT2]
Length = 761
Score = 197 bits (500), Expect = 7e-48, Method: Composition-based stats.
Identities = 68/409 (16%), Positives = 146/409 (35%), Gaps = 35/409 (8%)
Query: 376 NNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLL------DSSSRFL 429
+ K + R + E K+ + IT+ D+S +
Sbjct: 368 DAKVVVDGKLQKYKANRNRVGEVLDALKAAVNLAD-----RITAPSFIGNSGRDASEY-I 421
Query: 430 GEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE-FLDLVSGYFESE-EVMDYFT 487
+GIL L T + + P + + + P +L ++ + + E +
Sbjct: 422 AAGNGILHLPTRELLPPDPAFFTRNALPFNYNHDAPPPAAWLQFLNSLWPDDPEAIKTLQ 481
Query: 488 RCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAG 547
+G L Q+ I G SGK T+ +I G V S + Q
Sbjct: 482 EIMGYLLTSDTTQQKIFGIVGPMRSGKGTIGRIITALLGQANVAGPTLSALSQQFG---- 537
Query: 548 KANPSLIRLMGSRIVIISETNENDEINAAKIKQ----MTGGDCMTARLNYGNTYSESPAS 603
+ L+G + IIS+ + A I + ++G D ++ + N ++
Sbjct: 538 -----IASLIGKKAAIISDARLGSRADQAAITERLLAISGEDNISVPRKFLNDFT-GKMD 591
Query: 604 FTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD-ASFAQKLETKYTLEAKKWFLKG 662
I+ N+ + + A R++++ + R+ + L + W L G
Sbjct: 592 VRFVILTNELPRLADSSGALANRFVMLTMTQSFLGRERPGLTKDLLAEL-PSILNWALDG 650
Query: 663 VKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYR 722
++ S+G P +A +E + A++ D C++G+ L E L +++ ++
Sbjct: 651 LERLTSRGY-FVQPASSREAMQELADLSSPIGAFVRDRCEVGQGLAVEVGLLYEAWKQWC 709
Query: 723 EQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771
++++ ++ + + GI ++ R+ +GL L
Sbjct: 710 NDHGR--EHPGTSQSFGRDI--RAAVPGISTKQKRAGGDIIRVYEGLTL 754
>gi|172055298|ref|YP_001806625.1| hypothetical protein cce_5213 [Cyanothece sp. ATCC 51142]
gi|171701579|gb|ACB54559.1| hypothetical protein cce_5213 [Cyanothece sp. ATCC 51142]
Length = 785
Score = 197 bits (500), Expect = 8e-48, Method: Composition-based stats.
Identities = 87/483 (18%), Positives = 168/483 (34%), Gaps = 75/483 (15%)
Query: 320 KKGHFLYTADTKAWYKKDKNN-VYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNK 378
+ +Y + +W + + IW + I SI++ +V + + N
Sbjct: 98 HRDRLIYCDELSSWLAYEIDGETGIWEMISKDIMLSIIDRIVE-SQGIRGYGSSSYIENI 156
Query: 379 NSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDL 438
K R + +N + L ++G+LDL
Sbjct: 157 EKKMRRLLVCKHWEEKNEKH------------------------------LPFENGVLDL 186
Query: 439 ETGQKVKPTKELYITKSTGTPFVEGEP-SQEFLDLVSGYFESEEVMDYFTRC-VGMALLG 496
ET + + +T + + ++ + +E C + L G
Sbjct: 187 ETSKFHQHAPGFRLTSKLPRQYNPLATSWSKTDQWLTEVVKGDEKAKELLLCYMAAVLRG 246
Query: 497 GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRL 556
Q F ++ G GG+GKST NL+ G Q + + ++ +IRL
Sbjct: 247 RYDLQVFCYLIGSGGAGKSTFTNLLTQLVGEQNTVELDFDELDDKH---------EVIRL 297
Query: 557 MGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFT-PFIVPNKHLF 615
G R++I+++ + A K++TGGD ++ R + N+ S F V +
Sbjct: 298 FGKRLLILADQDRVGR-KIANFKKLTGGDRLSGRYLFKNSMSF---QFKGLACVTSNPPN 353
Query: 616 VRNPDDAWW--RRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDV 673
V A W RR ++ F+ + +LE + + L + +I L
Sbjct: 354 VFPASTAKWLLRRMRLVEFNGRF-QPNYHLMDELEPEL-PGLTNYLLNLPEHHIENILKG 411
Query: 674 DIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLW----------------EESHSLAKS 717
+ E + +D +WI+D EN + S +L S
Sbjct: 412 RA-KELTATTWEHQCRSDGLASWINDWLIQDENAFSIIGSNGKEWNDSEYNAYSSTLYGS 470
Query: 718 YSEYREQELNYDRKRISTRTVTLNL---KQKGFIGGIKREKIEKEWKSKRIIKGLKLKPA 774
Y Y +Q R +T+ + +L ++ +K+ + K R I+G++L+
Sbjct: 471 YVLYCKQTG---RTPKTTQNFSADLIEVTERILGWPVKKRRKRIAGKIVRGIEGIRLRTN 527
Query: 775 FES 777
+
Sbjct: 528 DDD 530
>gi|323144216|ref|ZP_08078849.1| phage/plasmid primase, P4 family, C-terminal domain [Succinatimonas
hippei YIT 12066]
gi|322416008|gb|EFY06709.1| phage/plasmid primase, P4 family, C-terminal domain [Succinatimonas
hippei YIT 12066]
Length = 633
Score = 196 bits (497), Expect = 2e-47, Method: Composition-based stats.
Identities = 50/323 (15%), Positives = 111/323 (34%), Gaps = 18/323 (5%)
Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY-FESEEV 482
+ R++G ++GI DLE + + + IT ++ + +S + +
Sbjct: 298 ADPRYIGFKNGIYDLEERKLISFDPNIVITNPINHNYISDAYDADTDKFLSNITCGDKAL 357
Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542
+G L N Q+F + G G +GKS I+ G + + + +
Sbjct: 358 RANLEELLGYCLYRENSLQKFFLLYGSGSNGKSMFCTFIRAVLGEENCSSESLQRLGERF 417
Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602
+ + I + + + A +K ++ G +++S +P
Sbjct: 418 GSSS---------IYNKLANICDDNSSMHIKDPAMLKILSSGGNYQTEFKGKDSFSYTPF 468
Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLE-AKKWF 659
NK + + A RR ++IPF++ I +D + +KL +E +
Sbjct: 469 C-KLIFCMNKLPKINDNGQAVQRRLVIIPFNRSIPENEQDTALKKKLTKDSAIEYGIRIA 527
Query: 660 LKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYS 719
++G+ + E + + ++ I L + Y
Sbjct: 528 IEGLNRLLENN-KFTESEKIDQQLNNYLGYNNPIADFVKKKGGIEYLLSNYCGDIYSEYQ 586
Query: 720 EYREQELNYDRKRISTRTVTLNL 742
Y E+ + ++IS + +
Sbjct: 587 RYCEENCS---EKISIQMFGKQI 606
>gi|284037975|ref|YP_003387905.1| P4 family phage/plasmid primase [Spirosoma linguale DSM 74]
gi|283817268|gb|ADB39106.1| phage/plasmid primase, P4 family [Spirosoma linguale DSM 74]
Length = 486
Score = 195 bits (495), Expect = 3e-47, Method: Composition-based stats.
Identities = 61/368 (16%), Positives = 128/368 (34%), Gaps = 34/368 (9%)
Query: 389 TDYRRQNVEENSKAKSTAQSLE-AGSIFSITSDLLDSSSRF-----------LGEQDGIL 436
++ + E K TA+ +E A S+F D ++ + +G
Sbjct: 107 RNFLKTAAERMGVGKFTARYVEFAKSLF----DQFTETAYLPSPAISDNKININLANGTF 162
Query: 437 DL--ETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMAL 494
++ Q K ++T + + F ++ +G
Sbjct: 163 EISPTCQQIRKADSADFLTYQLSFAYNREAQAPLFQAFLNRVQPDVSCQHLLAEYLGYVF 222
Query: 495 L--GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS 552
+ K ++ + + G G +GKS +I G V + + +
Sbjct: 223 ISPAKLKLEKTLLLYGSGANGKSVFFEIITALLGPDNVSHYSLQSLT-------NEPAYC 275
Query: 553 LIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612
L + SE N ++ A+ KQM G+ + ARL YG + S + N+
Sbjct: 276 RANLATKLLNYASEI--NGKLEASTFKQMVSGEPIEARLPYGQPFIMSKYA-KLIFNCNE 332
Query: 613 HLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKG 670
A++RR++++PF+ I +D A K+ W L G+ + +
Sbjct: 333 LPADVEHTPAYFRRFLILPFNVTISEEEQDKELAAKIIRSELSGVFNWVLDGLHRLLEQ- 391
Query: 671 LDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDI-GENLWEESHSLAKSYSEYREQELNYD 729
E + E+ ++ +DT + ++D+ + L + Y + ++
Sbjct: 392 KRFTDCEAVKQQIEDYKRQSDTVRLFLDEQGYKPHTTDYSTLQDLYRDYRGFCIEDGYRA 451
Query: 730 RKRISTRT 737
K+++ R
Sbjct: 452 VKKLNFRK 459
>gi|242243105|ref|ZP_04797550.1| P4 family phage / plasmid primase [Staphylococcus epidermidis
W23144]
gi|242233453|gb|EES35765.1| P4 family phage / plasmid primase [Staphylococcus epidermidis
W23144]
Length = 624
Score = 194 bits (493), Expect = 5e-47, Method: Composition-based stats.
Identities = 52/322 (16%), Positives = 119/322 (36%), Gaps = 22/322 (6%)
Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDY 485
+L +GI DL T T E+ + P++E + + E+ +
Sbjct: 294 NYLTLANGIYDLNTNSMQSFTPEIIVKNKIPVPYIENSYHEITDKTFNKLAVNDHELRNL 353
Query: 486 FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545
F +G L N+ +F + G G +GKS+ + +++ G+ + D+
Sbjct: 354 FEEILGYTLFRRNEYGKFFILTGGGSNGKSSFLKILRALVGDTNTSSVALKDV------- 406
Query: 546 AGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFT 605
L G + + + + ++A++K + G+ + + + +
Sbjct: 407 --NGRFKTAELFGKLVNLGDDIGKGFIKDSAELKNLATGETLVVERKGKDPFDLRNYA-K 463
Query: 606 PFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETK-YTLEAKKW----FL 660
N+ + + D RR +++PF N D + + K + ++ ++ +
Sbjct: 464 LIFSANEVPRIDDKTDGLNRRLMIVPFKAKFTNTDIDYDPFIIDKLLSPDSLQYCLVMAI 523
Query: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSE 720
+G+ + P+ E ++ + A++++ EN E + + YSE
Sbjct: 524 RGLNRLLKNN-RFTKPKTVTAEIEAYKERNNPVLAFLNNEEPKLEN--ESTKDIYTQYSE 580
Query: 721 YREQELNYDRKRISTRTVTLNL 742
Y + Y K +S T +
Sbjct: 581 YC---VEYGYKSVSRAVFTKEV 599
>gi|239928907|ref|ZP_04685860.1| Phage/plasmid primase P4-like protein [Streptomyces ghanaensis ATCC
14672]
Length = 469
Score = 194 bits (492), Expect = 6e-47, Method: Composition-based stats.
Identities = 67/452 (14%), Positives = 145/452 (32%), Gaps = 35/452 (7%)
Query: 330 TKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNT 389
+W + W + M + + + S +D R W T
Sbjct: 37 RGSWMRWTGTCWREWD-------EAQMRAYMYERLEHATFSTPGKD---GQPEVRDWAPT 86
Query: 390 DYRRQNVEENSKAKSTAQSLEAGSIFSITSD---LLDSSSRFLGEQDGILDLETGQKVKP 446
+ N+ + + T + + I D D S + ++G+L + +
Sbjct: 87 KQKISNLLD-ALGAVTLLPTDTDAPAWIDDDRASEQDRSP-IVACRNGLLRIRDRALLPH 144
Query: 447 TKELYITKSTGTPFVEGEPSQEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIH 505
+ S + + + + + + + G L G Q+ +
Sbjct: 145 GPGFFNIVSVPFAYDPEATAPTWERFLRQIWPNDPDAIQALQEWFGYVLSGRTDQQKILL 204
Query: 506 IRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIIS 565
I G SGK T+ ++K G + + + + N L L+G + +IS
Sbjct: 205 IVGPSRSGKGTIARVLKELVGKENLAGPTLAGL---------GTNFGLSTLVGKPLAVIS 255
Query: 566 ETNENDEINAAKIKQM---TGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDA 622
+ + N+ ++++ +G D + Y ++ + I+ N+ + +
Sbjct: 256 DARLSGNDNSQVVERLLTISGEDTIDVDRKYREVWTGKLPT-RLMILSNELPYFGDSSGV 314
Query: 623 WWRRYIVIPFDKP-IANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLK 681
RR++V+ + D + +L + W L G+ + G + P +
Sbjct: 315 IARRFVVLNMTVSWLGKEDTTLTDRLAAE-MPGILNWALDGLARLETTG-RITEPACSRE 372
Query: 682 AKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLN 741
A + A+I +CC G +L + E+ E R + + N
Sbjct: 373 AVTTMQDTASPTSAFIRECCITGPTCSVPVDTLWAVWREWAEDNG--VRAVGTKQMFGRN 430
Query: 742 LKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773
L + + + G+ LKP
Sbjct: 431 LLSV-VPQLHRTRPRDAYGRQVATYNGIALKP 461
>gi|291437234|ref|ZP_06576624.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
gi|291340129|gb|EFE67085.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
Length = 527
Score = 193 bits (491), Expect = 9e-47, Method: Composition-based stats.
Identities = 67/452 (14%), Positives = 145/452 (32%), Gaps = 35/452 (7%)
Query: 330 TKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNT 389
+W + W + M + + + S +D R W T
Sbjct: 95 RGSWMRWTGTCWREWD-------EAQMRAYMYERLEHATFSTPGKD---GQPEVRDWAPT 144
Query: 390 DYRRQNVEENSKAKSTAQSLEAGSIFSITSD---LLDSSSRFLGEQDGILDLETGQKVKP 446
+ N+ + + T + + I D D S + ++G+L + +
Sbjct: 145 KQKISNLLD-ALGAVTLLPTDTDAPAWIDDDRASEQDRSP-IVACRNGLLRIRDRALLPH 202
Query: 447 TKELYITKSTGTPFVEGEPSQEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIH 505
+ S + + + + + + + G L G Q+ +
Sbjct: 203 GPGFFNIVSVPFAYDPEATAPTWERFLRQIWPNDPDAIQALQEWFGYVLSGRTDQQKILL 262
Query: 506 IRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIIS 565
I G SGK T+ ++K G + + + + N L L+G + +IS
Sbjct: 263 IVGPSRSGKGTIARVLKELVGKENLAGPTLAGL---------GTNFGLSTLVGKPLAVIS 313
Query: 566 ETNENDEINAAKIKQM---TGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDA 622
+ + N+ ++++ +G D + Y ++ + I+ N+ + +
Sbjct: 314 DARLSGNDNSQVVERLLTISGEDTIDVDRKYREVWTGKLPT-RLMILSNELPYFGDSSGV 372
Query: 623 WWRRYIVIPFDKP-IANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLK 681
RR++V+ + D + +L + W L G+ + G + P +
Sbjct: 373 IARRFVVLNMTVSWLGKEDTTLTDRLAAE-MPGILNWALDGLARLETTG-RITEPACSRE 430
Query: 682 AKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLN 741
A + A+I +CC G +L + E+ E R + + N
Sbjct: 431 AVTTMQDTASPTSAFIRECCITGPTCSVPVDTLWAVWREWAEDNG--VRAVGTKQMFGRN 488
Query: 742 LKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773
L + + + G+ LKP
Sbjct: 489 LLSV-VPQLHRTRPRDAYGRQVATYNGIALKP 519
>gi|218442311|ref|YP_002380637.1| primase P4 [Cyanothece sp. PCC 7424]
gi|218175415|gb|ACK74144.1| primase P4 [Cyanothece sp. PCC 7424]
Length = 1000
Score = 193 bits (490), Expect = 1e-46, Method: Composition-based stats.
Identities = 75/481 (15%), Positives = 160/481 (33%), Gaps = 76/481 (15%)
Query: 320 KKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKN 379
F Y + W + + F + +
Sbjct: 365 YANKFRYNNECNTWMEYQEEASS------------------------FGSWIPVSNLHIQ 400
Query: 380 SKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLE 439
++ DY + N + ++L + L D +L+L
Sbjct: 401 TQIYNILQARDYEFNSSYLNGIEELLRKALYIK--------EWPKAPNLLPFSDCVLELS 452
Query: 440 TGQKVKPTKELYITKSTGTPFVEGEP-SQEFLDLVSGYFESEEVMDYFTRCVGMA---LL 495
TG+ + + ++T P+ E + + ++ + A L
Sbjct: 453 TGKTREHSPNNWLTWVLPRPYNSLEKSWIKIDNWLTEATLGNATHK--QILLCYAAAVLR 510
Query: 496 GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIR 555
Q+F+H+ G GGSGKST MNL+ G Q I+ + + + + +
Sbjct: 511 RRADLQKFLHLIGTGGSGKSTFMNLLVALVGQQNTISLDFNSLNEKDA---------VAE 561
Query: 556 LMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLF 615
G + I + + + N + K++TG D + R Y + ++ + N +F
Sbjct: 562 AFGKVLAIFPDQDSAGK-NISNFKKITGQDLLRGRRLYKDGFNFR-FEGLCAVSSNHPIF 619
Query: 616 VRNPDDAWWRRYIVIPFDKPIAN-RDASFAQKLETK------YTLEAKKWFLKGVKAYIS 668
RR +++PF+ + + + + ++ E + Y L + ++
Sbjct: 620 HSGSGRWLTRRVLMVPFELAVPDGKVRNLEKEFEPELSAFTSYLLSIPESEIEATLK--- 676
Query: 669 KGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSE-------- 720
GL+ +V + +D +W++D + S AK + E
Sbjct: 677 -GLNKK--QVVSSTLWSSQIRSDGLASWVNDEIIFDSTARTQIGSNAKEWGEDDYDAASS 733
Query: 721 -----YREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAF 775
Y R+ ++ + NL + G +KR+ + + R + G++L+ A
Sbjct: 734 TLFGSYCRHIRRSGRQPLTKDNFSANLIEL-LKGTLKRDVEKIKTNQGRFLTGVRLRTAL 792
Query: 776 E 776
+
Sbjct: 793 D 793
>gi|148543897|ref|YP_001271267.1| P4 family phage/plasmid primase [Lactobacillus reuteri DSM 20016]
gi|184153296|ref|YP_001841637.1| phage DNA primase [Lactobacillus reuteri JCM 1112]
gi|227364805|ref|ZP_03848853.1| P4 family phage/plasmid primase [Lactobacillus reuteri MM2-3]
gi|325682570|ref|ZP_08162087.1| phage/plasmid primase [Lactobacillus reuteri MM4-1A]
gi|148530931|gb|ABQ82930.1| phage/plasmid primase, P4 family [Lactobacillus reuteri DSM 20016]
gi|183224640|dbj|BAG25157.1| phage DNA primase [Lactobacillus reuteri JCM 1112]
gi|227070149|gb|EEI08524.1| P4 family phage/plasmid primase [Lactobacillus reuteri MM2-3]
gi|324978409|gb|EGC15359.1| phage/plasmid primase [Lactobacillus reuteri MM4-1A]
Length = 463
Score = 192 bits (488), Expect = 2e-46, Method: Composition-based stats.
Identities = 73/357 (20%), Positives = 129/357 (36%), Gaps = 33/357 (9%)
Query: 435 ILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLV--------------SGYFESE 480
+L T + E Y+ ++ + + + +G + E
Sbjct: 122 TYNLMTDTLEDNSPENYLLQNRPYELETKGKATTWNKWLKQSLVPSTKEIRDDTGKLQDE 181
Query: 481 ---EVMDYFTRCVGMALLGGNKA-QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEAS 536
++ +G AL G K Q ++ + G+GG GKST +N + G V N
Sbjct: 182 YDLTAIETVKAFIGFALAGSFKDFQIYMILYGLGGDGKSTFLNKLMELIGKPNVSNVSLE 241
Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNT 596
+ + +A + +L + ++ + IK +TGGD TA+ Y +
Sbjct: 242 ALSDQK-----EAKFATSQLYHKAANVFADISPKFMEQTNIIKTLTGGDATTAQFKYKDP 296
Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAK 656
+ + N + D + RR I++ F I + F ++ +
Sbjct: 297 F-KLENEAKLIFSANDLPAFNDFTDGFKRRPIIVTF-HKIKHFKEQFKEQDFKREMPAFA 354
Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAK 716
LK K + G + E + K D WI+DCC EN E+S L
Sbjct: 355 YECLKSYKKALDSG-KFPVTEYMEQQKRSWVNANDNIGNWINDCCTTNENDKEKSVYLYG 413
Query: 717 SYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773
+Y EY + N +S R L +G+ K ++ K+ + KG+ LK
Sbjct: 414 NYKEYCK---NTAVPCLSNRKFAKELIARGY----KHTTVKINGKNVKGYKGIALKN 463
>gi|85703049|ref|ZP_01034153.1| hypothetical protein ROS217_19947 [Roseovarius sp. 217]
gi|85671977|gb|EAQ26834.1| hypothetical protein ROS217_19947 [Roseovarius sp. 217]
Length = 791
Score = 192 bits (488), Expect = 2e-46, Method: Composition-based stats.
Identities = 62/313 (19%), Positives = 109/313 (34%), Gaps = 42/313 (13%)
Query: 4 MQWKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQ 63
+ ++ A++ + NG++ IP++ G K P L +W ++ +D G+
Sbjct: 30 ITFENAAERLLDNGYEPIPIKPGQKAPA-LNRWTSVVIDDAALDDWRGRYASCGIGLRTG 88
Query: 64 PLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQ 123
L DID D A+ + G +VR+G PK L+ +R K K
Sbjct: 89 LLVGIDIDVLDPDRAHDVQALAVRRFGETLVRVGCWPKRLLIYRTEIPFAKMKS------ 142
Query: 124 GHLDILGCGQYFVAYNIHPKTKKEYTWT--TPPHRFKVEDTPLLSEEDVEYLFKFFQEIT 181
G ++ILG GQ FVA+ IHP T + Y W P + D P++ ++ +
Sbjct: 143 GQVEILGQGQQFVAFGIHPGTGRPYAWPLGETPLDVALSDLPVIDHTEIAAFLAEIEPTD 202
Query: 182 VPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVM--AVHHE 239
+ D + R+ ++ D W+ ++ AVH
Sbjct: 203 HRSITDAGGRRRKAAGFGH-----PVRDAQGVVTD--------GRDAWLSLIAFHAVHDL 249
Query: 240 TRGSSK------GKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYH 293
++ +R+ + D + G S +
Sbjct: 250 LEAEDALDVDQLAAQVWQRFGEST------------DLTRPRQDGARTYTYSDAVRKVHD 297
Query: 294 HGKLIPKGLLASR 306
+L G L SR
Sbjct: 298 KMRLHATGALPSR 310
>gi|307591546|ref|YP_003900345.1| primase P4 [Cyanothece sp. PCC 7822]
gi|306986400|gb|ADN18279.1| primase P4 [Cyanothece sp. PCC 7822]
Length = 1012
Score = 192 bits (487), Expect = 3e-46, Method: Composition-based stats.
Identities = 81/488 (16%), Positives = 169/488 (34%), Gaps = 76/488 (15%)
Query: 313 KAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEE 372
++ + F Y + W + + K A I
Sbjct: 338 ASVIAERYLNKFRYNNEANTWMEYQDEAI--------KGGAWIA---------------- 373
Query: 373 PEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQ 432
+ + ++ +Y + NS + ++L + L
Sbjct: 374 VSNLHIQTQIYHILQARNYEFNSSYLNSIEELLRKALYIK--------EWPKTPNLLPFS 425
Query: 433 DGILDLETGQKVKPTKELYITKSTGTPF-VEGEPSQEFLDLVSGYFESEEVMDYFTRCVG 491
D +LDL TG+ ++ + Y+T P+ V + E + ++ S +
Sbjct: 426 DCVLDLYTGKTIEHSPNNYLTWVLPRPYNVPLQSWTEIDNWLTEATRSNAAHK--QILLC 483
Query: 492 MA---LLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGK 548
A L Q+F+H+ G GGSGKST MNL+ G Q I+ + + + +
Sbjct: 484 YAAAVLRRRADLQKFLHLIGTGGSGKSTFMNLLVALVGQQNTISLDFTSLNEKDA----- 538
Query: 549 ANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFI 608
+ G + I + + + N + K++TG D + R Y + ++ +
Sbjct: 539 ----VAEAFGKVLAIFPDQDSAGK-NISNFKKITGQDLLRGRRLYKDGFNFR-FEGMCAV 592
Query: 609 VPNKHLFVRNPDDAWWRRYIVIPFDKPIAN-RDASFAQKLETK------YTLEAKKWFLK 661
N +F RR +++PF+ + + + + ++ E + Y L + ++
Sbjct: 593 SSNNPIFHSGSGRWLTRRVLMVPFELAVPDGKVRNLEKEFEPELSAFTHYLLSIPETQIE 652
Query: 662 GVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSY--- 718
GL+ +V K E + +D +W++D + S A+ +
Sbjct: 653 ATLK----GLNKK--QVISKTLWESQIRSDGLASWLNDEIVFEVTARTQIGSNAREWDNL 706
Query: 719 ----------SEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKG 768
Y R+ ++ + NL + G +KR+ + + R I G
Sbjct: 707 DYDPTTSTLFGSYCHHIKRSGRQPLTKDNFSANLIEL-LKGTLKRDVEKVKTNQGRFITG 765
Query: 769 LKLKPAFE 776
++L+ +
Sbjct: 766 VRLRTLHD 773
>gi|166032368|ref|ZP_02235197.1| hypothetical protein DORFOR_02071 [Dorea formicigenerans ATCC
27755]
gi|226324022|ref|ZP_03799540.1| hypothetical protein COPCOM_01800 [Coprococcus comes ATCC 27758]
gi|166028091|gb|EDR46848.1| hypothetical protein DORFOR_02071 [Dorea formicigenerans ATCC
27755]
gi|225207571|gb|EEG89925.1| hypothetical protein COPCOM_01800 [Coprococcus comes ATCC 27758]
Length = 600
Score = 192 bits (487), Expect = 3e-46, Method: Composition-based stats.
Identities = 61/425 (14%), Positives = 148/425 (34%), Gaps = 36/425 (8%)
Query: 376 NNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSS-RFLGEQDG 434
+ + ++ R V+ K L A + L+ R++ ++G
Sbjct: 182 EDHDGVRMKYRIQKLIYRDQVQS-GVIKRIYNLLIAQPKVHREAYELNKQPVRWINFKNG 240
Query: 435 ILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFL-------DLVSGYFESEEVMDYFT 487
D G+ ++ + P+ E ++ L ++ ++E F
Sbjct: 241 YYDPVKGEMLEHNPDYLTINQIPFPYYP-EDCEQVLQGGENIKKYLASSLPNKEEQQTFW 299
Query: 488 RCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAG 547
G + + Q+F+ ++G GG+GKS ++LI++ G + + D+ +
Sbjct: 300 EYFGYCMTQDTQFQKFLTLKGNGGTGKSVAVSLIQHVVGITNMSSISLQDLNKRFYATG- 358
Query: 548 KANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPF 607
+ G + ++ N +K+ G D + + +
Sbjct: 359 --------MYGKLLNACADIPCKAMENTDVLKKAVGEDTLIYEKKGQDAIHFHSYA-KLL 409
Query: 608 IVPNKHLF-VRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVK 664
N+ + + DA++RR +++ ++ + +D +K++ + + +K
Sbjct: 410 FSTNEMPQNLEDKSDAFYRRLLILDMNRVVKSGEKDLHLKEKVQAESDYAIHM-AMIALK 468
Query: 665 AYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQ 724
+G E + E ++ +D+ A+ID+ + + + Y EY ++
Sbjct: 469 NLYEQG-KFTESEHSKECVREVQRTSDSICAFIDESLVRAKGKRLKRSEVFHMYEEYCKE 527
Query: 725 ELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDNSNI 784
R+ N+ KGF+ K++ + + + +K D
Sbjct: 528 NG---RQGHGKSNFFRNMTDKGFLL--------KQYNGEFYYQDIAVKEEDFCPVDPEER 576
Query: 785 IDFKR 789
I F+
Sbjct: 577 IPFEE 581
>gi|229119301|ref|ZP_04248604.1| Phage / plasmid primase, P4 [Bacillus cereus Rock1-3]
gi|228664167|gb|EEL19705.1| Phage / plasmid primase, P4 [Bacillus cereus Rock1-3]
Length = 622
Score = 191 bits (486), Expect = 3e-46, Method: Composition-based stats.
Identities = 48/342 (14%), Positives = 118/342 (34%), Gaps = 25/342 (7%)
Query: 431 EQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRC 489
++G+ +LET Q T E+ ++ G + + ++V
Sbjct: 297 VKNGVFNLETWQLEDFTPEIITRNKIPVAYIPGAYYEITDKTFNKIAVNDKKVRAILEEI 356
Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549
+G L N+ + G G +GKS+ + +I+ G+ + + +++ Q
Sbjct: 357 LGYILFRRNEFAATFILTGDGSNGKSSYLKIIRKLIGSDNASSLDLNELDQ--------- 407
Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609
L G I + + ++ K+++ G+ + + + + +
Sbjct: 408 RFKTAELFGKLANIGDDIGKGYIKESSIFKKLSTGETLNVERKGKDPFDFTNYA-KLIFS 466
Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFA----QKLETKYTLE-AKKWFLKGVK 664
N+ + + D RR ++PF D + KL + +++ LK +K
Sbjct: 467 ANEMPRINDFSDGLGRRLQIVPFKAKFTPNDDDYDPFITDKLLSDESMQYVLNLALKSLK 526
Query: 665 AYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQ 724
+ + + + ++ + ++++ + E + Y Y +
Sbjct: 527 RLLVE-KKFTKSKAVEDELIKYQEENNPIISFVN--NEDVELERAVVGDVYLQYKVYCAE 583
Query: 725 ELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRII 766
+ +S + + Q + G K + K+KRI
Sbjct: 584 NG---FQSVSNINFSKQVTQ---LFGYKSHVQRVDGKNKRIF 619
>gi|229890279|sp|P0C9X2|H962R_ASFK5 RecName: Full=Putative helicase C962R
Length = 962
Score = 191 bits (485), Expect = 4e-46, Method: Composition-based stats.
Identities = 103/641 (16%), Positives = 212/641 (33%), Gaps = 80/641 (12%)
Query: 207 NREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTY----DE 262
R + L+ E+Y + W VV A+ S+ + +A +S++ +
Sbjct: 300 ARYLHKILNLLPPEYY-VEYPLWSNVVFAL---ANTSANYRPLAEWFSQKCPEKWNTGGK 355
Query: 263 ENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPK-----------GLLAS------ 305
E W+ + +K+ T S+ Y K P+ +LA
Sbjct: 356 EKLEKLWN-----DASHHTEKKITKRSIMYWAHKHAPQQYKEIVEQGYFSILAEYVYSYN 410
Query: 306 -RFSDAYNKAMFSIYKKGHFLYTADTKA---WYKK-------DKNNVYIWSLTLD----- 349
+ F+ D+ W++ ++ ++ W ++
Sbjct: 411 GTLEHYMIAKVIYAMMGNKFVVDVDSNGKYVWFEFVLPGQPMNQGEIWKWRKEVNPDELH 470
Query: 350 -KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQS 408
I+ + + + E + +P + N + + + + + +S K +
Sbjct: 471 IYISENFSRVMDRITEHIKYHLSQPHETNILNYYKKLLKAFERSKSKIFNDSFKKGVIRQ 530
Query: 409 LEAGSIFSITSDLLDSSSRFLGEQDGILDLET--GQKVKPTKELYITKSTGTPFVEGEPS 466
E LD++ LG +G+L +ET + + E I + T +V P
Sbjct: 531 AEFLFRQRSFIQTLDTNPHLLGVGNGVLSIETIPAKLINHFHEHPIHQYTHICYVPFNPE 590
Query: 467 QEF----LDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIK 522
+ L+ + + + + A+ G K + G G +GK+ LM L+
Sbjct: 591 NPWTKLLLNALQDIIPELDARLWIMFYLSTAIFRGLKEALMLLWLGGGCNGKTFLMRLVA 650
Query: 523 YAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMT 582
G+ Y S + R A K N + +RL G ETN+++ +N +++K+M
Sbjct: 651 MVLGDHYASKLNISLLTSYRE-TAEKPNSAFMRLKGRGYGYFEETNKSEVLNTSRLKEMV 709
Query: 583 GGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYI----VIPF------ 632
+TAR S + T N + + D WRR + F
Sbjct: 710 NPGDVTARELNQKQESFQ-MTATMVAASNYNFIIDTTDHGTWRRLRHYRSKVKFCHNPDP 768
Query: 633 -DKPIANRDASFAQKLE-----TKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEE 686
+ D F + +F + ++ + + E
Sbjct: 769 NNSYEKKEDPRFIHEYIMDPNCQNAFFSILVYFWEKLQKEYNGQIKKVFCPTIESETEAY 828
Query: 687 RQGTDTYQAWIDDCCDIGENLWEES--HSLAKSYSEYREQELNYDRKRISTRTVTLNLKQ 744
R+ DT +I + + + +Y+E+ +N R ++ L+
Sbjct: 829 RKSQDTLHRFITERVVESPSAETVYNLSEVVTAYAEWYNANINVKRHI--ALELSQELEN 886
Query: 745 KGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDNSNII 785
++ RI+KG ++ FE++ + I
Sbjct: 887 SVLEKYLQWS-----PNKTRILKGCRILHKFETLQPGESYI 922
>gi|85703019|ref|ZP_01034123.1| hypothetical protein ROS217_19797 [Roseovarius sp. 217]
gi|85671947|gb|EAQ26804.1| hypothetical protein ROS217_19797 [Roseovarius sp. 217]
Length = 1012
Score = 191 bits (485), Expect = 4e-46, Method: Composition-based stats.
Identities = 62/313 (19%), Positives = 109/313 (34%), Gaps = 42/313 (13%)
Query: 4 MQWKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQ 63
+ ++ A++ + NG++ IP++ G K P L +W ++ +D G+
Sbjct: 30 ITFENAAERLLDNGYEPIPIKPGQKAPA-LNRWTSVVIDDAALDDWRGRYASCGIGLRTG 88
Query: 64 PLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQ 123
L DID D A+ + G +VR+G PK L+ +R K K
Sbjct: 89 LLVGIDIDVLDPDRAHDVQALAVRRFGETLVRVGCWPKRLLIYRTEIPFAKMKS------ 142
Query: 124 GHLDILGCGQYFVAYNIHPKTKKEYTWT--TPPHRFKVEDTPLLSEEDVEYLFKFFQEIT 181
G ++ILG GQ FVA+ IHP T + Y W P + D P++ ++ +
Sbjct: 143 GQVEILGQGQQFVAFGIHPGTGRPYAWPLGETPLDVALSDLPVIDHTEIAAFLAEIEPTD 202
Query: 182 VPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVM--AVHHE 239
+ D + R+ ++ D W+ ++ AVH
Sbjct: 203 HRSITDAGGRRRKAAGFGH-----PVRDAQGVVTD--------GRDAWLSLIAFHAVHDL 249
Query: 240 TRGSSK------GKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYH 293
++ +R+ + D + G S +
Sbjct: 250 LEAEDALDVDQLAAQVWQRFGEST------------DLTRPRQDGARTYTYSDAVRKVHD 297
Query: 294 HGKLIPKGLLASR 306
+L G L SR
Sbjct: 298 KMRLHATGALPSR 310
>gi|229890393|sp|Q8V9U4|H962R_ASFM2 RecName: Full=Putative helicase C962R
Length = 962
Score = 190 bits (483), Expect = 7e-46, Method: Composition-based stats.
Identities = 103/641 (16%), Positives = 212/641 (33%), Gaps = 80/641 (12%)
Query: 207 NREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTY----DE 262
R + L+ E+Y + W VV A+ S+ + +A +S++ +
Sbjct: 300 ARYLHKILNLLPPEYY-VEYPLWSNVVFAL---ANTSANYRPLAEWFSQKCPEKWNTGGK 355
Query: 263 ENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPK-----------GLLAS------ 305
E W+ + +K+ T S+ Y K P+ +LA
Sbjct: 356 EKLEKLWN-----DASRHTEKKITKRSIMYWAHKHAPQQYKEIVEQGYFSILAEYVYSYN 410
Query: 306 -RFSDAYNKAMFSIYKKGHFLYTADTKA---WYKK-------DKNNVYIWSLTLD----- 349
+ F+ D+ W++ ++ ++ W ++
Sbjct: 411 GTLEHYMIAKVIYAMMGNKFVVDVDSNGKYVWFEFVLPGQPMNQGEIWKWRKEVNPDELH 470
Query: 350 -KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQS 408
I+ + + + E + +P + N + + + + + +S K +
Sbjct: 471 IYISENFSRVMDRITEHIKYHLSQPHETNILNYYKKLLKAFERSKSKIFNDSFKKGVIRQ 530
Query: 409 LEAGSIFSITSDLLDSSSRFLGEQDGILDLET--GQKVKPTKELYITKSTGTPFVEGEPS 466
E LD++ LG +G+L +ET + + E I + T + P
Sbjct: 531 AEFLFRQRSFIQTLDTNPHLLGVGNGVLSIETIPAKLINHFHEHPIHQYTHICYEPFNPE 590
Query: 467 QEF----LDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIK 522
+ L+ + + + + A+ G K + G G +GK+ LM L+
Sbjct: 591 NPWTKLLLNALQDIIPELDARLWIMFYLSTAIFRGLKEALMLLWLGGGCNGKTFLMRLVA 650
Query: 523 YAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMT 582
G+ Y S + R A K N + +RL G ETN+++ +N +++K+M
Sbjct: 651 MVLGDHYASKLNISLLTSCRE-TAEKPNSAFMRLKGRGYGYFEETNKSEVLNTSRLKEMV 709
Query: 583 GGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYI----VIPF------ 632
+TAR S + T N + + D WRR + F
Sbjct: 710 NPGDVTARELNQKQESFQ-MTATMVAASNYNFIIDTTDHGTWRRLRHYRSKVKFCHNPDP 768
Query: 633 -DKPIANRDASFAQKLE-----TKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEE 686
+ D F + +F + ++ + + E
Sbjct: 769 NNSYEKKEDPRFIHEYIMDPNCQNAFFSILVYFWEKLQKEYNGQIKKVFCPTIESETEAY 828
Query: 687 RQGTDTYQAWIDDCCDIGENLWEES--HSLAKSYSEYREQELNYDRKRISTRTVTLNLKQ 744
R+ DT +I + + + +Y+E+ N + KR ++ L+
Sbjct: 829 RKSQDTLHRFITERVVESPSAETVYNLSEVVTAYAEW--YNTNINVKRHIALELSQELEN 886
Query: 745 KGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDNSNII 785
++ RI+KG ++ FE++ + I
Sbjct: 887 SVLEKYLQWS-----PNKTRILKGCRILHKFETLQPGESYI 922
>gi|9628179|ref|NP_042765.1| pC962R [African swine fever virus]
gi|82051501|sp|Q65162|H962R_ASFB7 RecName: Full=Putative helicase C962R
gi|780441|gb|AAA65301.1| pC962R [African swine fever virus]
gi|162849281|emb|CAN10171.1| pC962R [African swine fever virus Benin 97/1]
gi|1097461|prf||2113434BY C962R gene
Length = 962
Score = 190 bits (482), Expect = 8e-46, Method: Composition-based stats.
Identities = 103/641 (16%), Positives = 212/641 (33%), Gaps = 80/641 (12%)
Query: 207 NREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTY----DE 262
R + L+ E+Y + W VV A+ S+ + +A +S++ +
Sbjct: 300 ARYLHKILNLLPPEYY-VEYPLWSNVVFAL---ANTSANYRPLAEWFSQKCPEKWNTGGK 355
Query: 263 ENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPK-----------GLLAS------ 305
E W+ + +K+ T S+ Y K P+ +LA
Sbjct: 356 EKLEKLWN-----DASRHTEKKITKRSIMYWAHKHAPQQYKEIVEQGYFSILAEYVYSYN 410
Query: 306 -RFSDAYNKAMFSIYKKGHFLYTADTKA---WYKK-------DKNNVYIWSLTLD----- 349
+ F+ D+ W++ ++ ++ W ++
Sbjct: 411 GMLEHYMIAKVIYAMMGNKFVVDVDSNGKYVWFEFVLPGQPMNQGEIWKWRKEVNPDELH 470
Query: 350 -KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQS 408
I+ + + + E + +P + N + + + + + +S K +
Sbjct: 471 IYISENFSRVMDRITEHIKYHLSQPHETNILNYYKKLLKAFERSKSKIFNDSFKKGVIRQ 530
Query: 409 LEAGSIFSITSDLLDSSSRFLGEQDGILDLET--GQKVKPTKELYITKSTGTPFVEGEPS 466
E LD++ LG +G+L +ET + + E I + T +V P
Sbjct: 531 AEFLFRQRSFIQTLDTNPHLLGVGNGVLSIETIPAKLINHFHEHPIHQYTHICYVPFNPE 590
Query: 467 QEF----LDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIK 522
+ L+ + + + + A+ G K + G G +GK+ LM L+
Sbjct: 591 NPWTKLLLNALQDIIPELDARLWIMFYLSTAIFRGLKEALMLLWLGGGCNGKTFLMRLVA 650
Query: 523 YAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMT 582
G+ Y S + R A K N + +RL G ETN+++ +N +++K+M
Sbjct: 651 MVLGDHYASKLNISLLTSCRE-TAEKPNSAFMRLKGRGYGYFEETNKSEVLNTSRLKEMV 709
Query: 583 GGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYI----VIPF------ 632
+TAR S + T N + + D WRR + F
Sbjct: 710 NPGDVTARELNQKQESFQ-MTATMVAASNYNFIIDTTDHGTWRRLRHYRSKVKFCHNPDP 768
Query: 633 -DKPIANRDASFAQKLE-----TKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEE 686
+ D F + +F + ++ + + E
Sbjct: 769 GNPYEKKEDPRFIHEYIMDPDCQNAFFSILVYFWEKLQKEYNGQIKKVFCPTIESETEAY 828
Query: 687 RQGTDTYQAWIDDCCDIGENLWEES--HSLAKSYSEYREQELNYDRKRISTRTVTLNLKQ 744
R+ DT +I + + + +Y+E+ +N R ++ L+
Sbjct: 829 RKSQDTLHRFITERVVESPSAETVYNLSEVVTAYAEWYNANINVKRHI--ALELSQELEN 886
Query: 745 KGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDNSNII 785
++ RI+KG ++ FE++ + I
Sbjct: 887 SVLEKYLQWS-----PNKTRILKGCRILHKFETLQPGESYI 922
>gi|218442614|ref|YP_002380934.1| P4 family phage/plasmid primase [Cyanothece sp. PCC 7424]
gi|218174972|gb|ACK73704.1| phage/plasmid primase, P4 family [Cyanothece sp. PCC 7424]
Length = 1145
Score = 190 bits (482), Expect = 9e-46, Method: Composition-based stats.
Identities = 86/574 (14%), Positives = 184/574 (32%), Gaps = 70/574 (12%)
Query: 241 RGSSKGKE----IARRWSKQ-GSTYDEENFNYKWDTF-DFEEIGDTAKKRSTFTSLFYHH 294
S + E IA +S+ S Y E + W T + D R+ + +
Sbjct: 395 NDSDEAIEKIFSIAVAYSRTIPSQYKLEEETFFWATIRNSLGELDPEAFRAKLKARYGDT 454
Query: 295 GKLIPKGLLASRFSDAYNKAM---FSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKI 351
+ K + D ++ + + + D + W++ N IW+
Sbjct: 455 PSIPTKSGQDLKVPDWAQSSIAKWLAERYRPLLAFNTDIEEWFRYSAINEGIWTKDPKY- 513
Query: 352 TASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEA 411
I +++ E + D+ E+ + K K + + L+A
Sbjct: 514 --YIWQIIITELETLADIHEQLHEKKKRPKYGSGFIS---------------GIEMLLKA 556
Query: 412 GSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLD 471
+ D L +G+ +L TG+ V +T + G + LD
Sbjct: 557 ----YLPVRGWDEQPGLLPFINGVKNLTTGEFVPHAPGFRLTWCLPYEYSPGATCEPILD 612
Query: 472 LVSGYFESEE-VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530
+ +E ++++ + + G + Q ++ + G GG+GK TL L G++
Sbjct: 613 WLHSMTNGDEAIIEFIRAHLNAIITGRSDIQSYLELIGPGGTGKGTLTRLASALTGDRNT 672
Query: 531 INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR 590
++ ++ +NR RL +R+VII++ + + + +K +TGGD +
Sbjct: 673 VSTTLRNLEENR--------FDTSRLYQARLVIITDAEK-WGGDVSVLKAITGGDKLRFE 723
Query: 591 LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETK 650
+ I N+ + + RR + I + +L
Sbjct: 724 QKFKQPLDGFYYKGRVMICANEPIQSADYTSGLERRRQTVYMTNKIPLKSQRKLIELSNS 783
Query: 651 YTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAK-------EEERQ----GTDTYQAWIDD 699
+L G+ ++ + E ++ + + T+ W+D
Sbjct: 784 GVEGEFVPYLPGLMNWVL-DMSPTDVERIIRETPTAHHQFQYYKAQILTETNPIADWLDT 842
Query: 700 CCDIGENLWEESHSLAKS----------------YSEYREQELNYDRKRISTRTVTLNLK 743
+ + ++ Y+ Y E K +S R L
Sbjct: 843 SVVVRPDYRTAIGVASRDKSSESPNWYLNTDRWLYANYAEYCHGSGAKPVSVRRFVNLLH 902
Query: 744 QKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFES 777
+ ++ + + GLKL+ +
Sbjct: 903 DLAVNQLNLKVTKGRD-RMGSYVLGLKLRSPDDD 935
>gi|301300721|ref|ZP_07206906.1| phage/plasmid primase, P4 family, C-terminal domain protein
[Lactobacillus salivarius ACS-116-V-Col5a]
gi|300851659|gb|EFK79358.1| phage/plasmid primase, P4 family, C-terminal domain protein
[Lactobacillus salivarius ACS-116-V-Col5a]
Length = 444
Score = 189 bits (481), Expect = 1e-45, Method: Composition-based stats.
Identities = 55/376 (14%), Positives = 141/376 (37%), Gaps = 28/376 (7%)
Query: 398 ENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTG 457
S + ++ S+ + +S + F+ ++G+ +++ + T + IT
Sbjct: 85 RRSNRQEVLSYIDIKSLKNYSS----QDANFIAFKNGVYNIKEKRLEPYTPNIIITNKID 140
Query: 458 TPFVEGEPSQEFLDLVSGYFESE-EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKST 516
+ +++ + ++++ + N+ +F + G G +GKST
Sbjct: 141 YDYGPSAKCSLVDEIMDKLACHQRDLVNLLYEIIAYTFYRRNELGKFFILTGSGANGKST 200
Query: 517 LMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAA 576
+++I+ G++ + + + S++ Q L G I + +++ + +
Sbjct: 201 YLDMIRTLLGSKNISSLDVSELDQRFKTS---------ELAGKLANIGDDISDSYIKDTS 251
Query: 577 KIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDD--AWWRRYIVIPFDK 634
+K++ G+ +TA + + S N + D A RR +++PF+
Sbjct: 252 ILKKLVTGEAVTAERKGLDPFMFENYS-KLLFSANSIPRLGKGSDTKALNRRMVIVPFNA 310
Query: 635 PIANRDASFAQKLETKYTLE--AKKWFLKGVKAYIS--KGLDVDIPEVCLKAKEEERQGT 690
+ +D + ++ E K +K ++A + E+ + E+
Sbjct: 311 TFSPKDPDYKPYIKYDLRQENAIKYLIVKSIEALHRILENNGFTKSELADRELEKYEYEN 370
Query: 691 DTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGG 750
+ + DD + + L + + + K Y+EY + +S + + + F
Sbjct: 371 NPILGFFDD-LEETDYLNQPTKDVYKLYTEYCLRNGLNS---VSNISFSRQITSH-FNLT 425
Query: 751 IKREKIEKEWKSKRII 766
K ++ K RI
Sbjct: 426 SKSSRVN--GKVIRIY 439
>gi|162849454|emb|CAN10420.1| pC962R [African swine fever virus OURT 88/3]
Length = 962
Score = 189 bits (481), Expect = 1e-45, Method: Composition-based stats.
Identities = 104/641 (16%), Positives = 212/641 (33%), Gaps = 80/641 (12%)
Query: 207 NREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTY----DE 262
R + L+ E+Y + W VV A+ S+ + +A +S++ +
Sbjct: 300 ARYLHKILNLLPPEYY-VEYPLWSNVVFAL---ANTSANYRPLAEWFSQKCPEKWNTGGK 355
Query: 263 ENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPK-----------GLLAS------ 305
E W+ + +K+ T S+ Y K P+ +LA
Sbjct: 356 EKLEKLWN-----DASRHTEKKITKRSIMYWAHKHAPQQYKEIVEQGYFSILAEYVYSYN 410
Query: 306 -RFSDAYNKAMFSIYKKGHFLYTADTKA---WYKK-------DKNNVYIWSLTLD----- 349
+ F+ D+ W++ ++ ++ W ++
Sbjct: 411 GMLEHYMIAKVIYAMMGNKFVVDVDSNGKYVWFEFVLPGQPMNQGEIWKWRKEVNPDELH 470
Query: 350 -KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQS 408
I+ + + + E + +P + N + + + + + +S K +
Sbjct: 471 IYISENFSRVMDRITEHIKYHLSQPHETNILNYYKKLLKAFERSKSKIFNDSFKKGVIRQ 530
Query: 409 LEAGSIFSITSDLLDSSSRFLGEQDGILDLET--GQKVKPTKELYI---TKSTGTPFVEG 463
E LD++ LG +G+L +ET + + E I T+ PF
Sbjct: 531 AEFLFRQRSFIQTLDTNPHLLGVGNGVLSIETIPAKLINHFHEHPIHQYTRICYVPFNPE 590
Query: 464 EPS-QEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIK 522
P + L+ + + + + A+ G K + G G +GK+ LM L+
Sbjct: 591 NPWTKLLLNALQDIIPELDARLWIMFYLSTAIFRGLKEALMLLWLGGGCNGKTFLMRLVA 650
Query: 523 YAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMT 582
G+ Y S + R A K N + +RL G ETN+++ +N +++K+M
Sbjct: 651 MVLGDHYASKLNISLLTSCRE-TAEKPNSAFMRLKGRGYGYFEETNKSEVLNTSRLKEMV 709
Query: 583 GGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYI----VIPF------ 632
+TAR S + T N + + D WRR + F
Sbjct: 710 NPGDVTARELNQKQESFQ-MTATMVAASNYNFIIDTTDHGTWRRLRHYRSKVKFCHNPDP 768
Query: 633 -DKPIANRDASFAQKLE-----TKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEE 686
+ D F + +F + ++ + + E
Sbjct: 769 GNPYEKKEDPRFIHEYIMDPDCQNAFFSILVYFWEKLQKEYNGQIKKVFCPTIESETEAY 828
Query: 687 RQGTDTYQAWIDDCCDIGENLWEES--HSLAKSYSEYREQELNYDRKRISTRTVTLNLKQ 744
R+ DT +I + + + +Y+E+ +N R ++ L+
Sbjct: 829 RKSQDTLHRFITERVVESPSAETVYNLSEVVTAYAEWYNANINVKRHI--ALELSQELEN 886
Query: 745 KGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDNSNII 785
++ RI+KG ++ FE++ + I
Sbjct: 887 SVLEKYLQWS-----PNKTRILKGCRILHKFETLQPGESYI 922
>gi|303398756|emb|CBW46737.1| C962R [African swine fever virus Georgia 2007/1]
Length = 962
Score = 189 bits (481), Expect = 1e-45, Method: Composition-based stats.
Identities = 104/641 (16%), Positives = 214/641 (33%), Gaps = 80/641 (12%)
Query: 207 NREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTY----DE 262
R + L+ E+Y + W VV A+ S+ + +A +S++ +
Sbjct: 300 ARYLHKILNLLPPEYY-VEYPLWSNVVFAL---ANTSANYRPLAEWFSQKCPEKWNTGGK 355
Query: 263 ENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPK-----------GLLAS------ 305
E W+ + +K+ T S+ Y K P+ +LA
Sbjct: 356 EKLEKLWN-----DASHHTEKKITKRSIMYWAHKHAPQQYKEIVEQGYFSILAEYVYSYN 410
Query: 306 -RFSDAYNKAMFSIYKKGHFLYTADTKA---WYKK-------DKNNVYIWSLTLD----- 349
+ F+ D+ W++ ++ ++ W ++
Sbjct: 411 GMLEHYMIAKVIYAMMGNKFVVDVDSNGKYVWFEFVLPGQPMNQGEIWKWRKEVNPDELH 470
Query: 350 -KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQS 408
I+ + + + E + +P ++N + + + + + +S K +
Sbjct: 471 IYISENFSRVMDRITEHIKYHLSQPHESNILNYYKKLLKAFERSKSKIFNDSFKKGVIRQ 530
Query: 409 LEAGSIFSITSDLLDSSSRFLGEQDGILDLET--GQKVKPTKELYITKSTGTPFVEGEPS 466
E LD++ LG +G+L +ET + + E I + T +V P
Sbjct: 531 AEFLFRQRSFIQTLDTNPHLLGVGNGVLSIETIPAKLINHFHEHPIHQYTHICYVPFNPE 590
Query: 467 QEF----LDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIK 522
+ L+ + + + + A+ G K + G G +GK+ LM L+
Sbjct: 591 NPWTKLLLNALQDIIPELDARLWIMFYLSTAIFRGLKEALMLLWLGGGCNGKTFLMRLVA 650
Query: 523 YAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMT 582
G+ Y S + R A K N + +RL G ETN+++ +N +++K+M
Sbjct: 651 MVLGDHYASKLNISLLTSCRE-TAEKPNSAFMRLKGRGYGYFEETNKSEVLNTSRLKEMV 709
Query: 583 GGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYI----VIPF------ 632
+TAR S + T N + + D WRR + F
Sbjct: 710 NPGDVTARELNQKQESFQ-MTATMVAASNYNFIIDTTDHGTWRRLRHYRSKVKFCHNPDP 768
Query: 633 -DKPIANRDASFAQKLE-----TKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEE 686
+ D F + +F + ++ + + E
Sbjct: 769 SNPYEKKEDPRFIHEYIMDPDCQNAFFSILVYFWEKLQKEYNGQIKKVFCPTIESETEAY 828
Query: 687 RQGTDTYQAWIDDCCDIGENLWEES--HSLAKSYSEYREQELNYDRKRISTRTVTLNLKQ 744
R+ DT +I + + + +Y+E+ N + KR ++ L+
Sbjct: 829 RKSQDTLHRFITERVVESPSAETVYNLSEVVTAYAEW--YNTNINVKRHIALELSQELEN 886
Query: 745 KGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDNSNII 785
++ RI+KG ++ FE++ + I
Sbjct: 887 SVLEKYLQWS-----PNKTRILKGCRILHKFETLQPGESYI 922
>gi|310639695|ref|YP_003944453.1| primase, putative [Paenibacillus polymyxa SC2]
gi|309244645|gb|ADO54212.1| Primase, putative [Paenibacillus polymyxa SC2]
Length = 554
Score = 189 bits (480), Expect = 2e-45, Method: Composition-based stats.
Identities = 76/491 (15%), Positives = 156/491 (31%), Gaps = 51/491 (10%)
Query: 305 SRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKE 364
F N F + V L ++ +S + +
Sbjct: 92 ENFKVKDNNTRFYKTSSDRGNFVP-----------RVEWLMLNSFEMISSADGISIYQTK 140
Query: 365 DVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDS 424
+ + +++ + R D R+ K A L+ + L++
Sbjct: 141 QGYY---KHHSDSELAVLIRKNLTEDQNRE--VSRRKMDEVAYRLKTHPDLWRKFNDLNT 195
Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITK----------STGTPFVEGEPSQEFLDLVS 474
+ + +DG+L+L + + + T T + S F ++
Sbjct: 196 DTNLINFRDGVLNLRERRMLPHDPKYCFTSFIDADCKVIPQQNTNNRDYSYSSVFECFLT 255
Query: 475 GYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
E + + VG + A++ + G +GKS ++L++ G ++ +
Sbjct: 256 DCTEGDKAKQASLQQMVGYIISNHFNAKKMFVLIGEPHTGKSVWLSLLQILIGKEHTTSM 315
Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISE-TNENDEINAAKIKQMTGGDCMTARLN 592
+ NR + RL S++ I E +++ D IK +TGGD +T
Sbjct: 316 TLKQLGVNRFMQT--------RLAHSKLNISPEMSDDGDLKGVEFIKAVTGGDLITGDRK 367
Query: 593 YGNTYSESPASFTPFIVPNKHLFVRNPDD--AWWRRYIVIPFDKPIAN--RDASFAQKLE 648
+ N + D A+ R + I F+ I RD QKL
Sbjct: 368 GEAAIDFYGRT-KLVAAGNHMPKLAKHDGTTAFIDRLLFITFNNSIPERQRDRFLLQKLL 426
Query: 649 TKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGEN-- 706
+ + KW L+G+ I ++ K++ D +++D C +
Sbjct: 427 EERDI-IIKWALEGLYQLIDNNFIFTECNEAIQFKKKYMAELDNVTEFVNDMCVVEPEND 485
Query: 707 -LWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRI 765
L +Y Y + K+ +++ F + ++E
Sbjct: 486 KSRVHRTRLYDAYIIYCKANGLTSVKK---TEFWREIEK--FRVRSGKIRVE-GSTPLMG 539
Query: 766 IKGLKLKPAFE 776
+G++L E
Sbjct: 540 YRGIRLLSPDE 550
>gi|307591581|ref|YP_003900380.1| primase P4 [Cyanothece sp. PCC 7822]
gi|306986435|gb|ADN18314.1| primase P4 [Cyanothece sp. PCC 7822]
Length = 1006
Score = 189 bits (479), Expect = 2e-45, Method: Composition-based stats.
Identities = 71/378 (18%), Positives = 149/378 (39%), Gaps = 40/378 (10%)
Query: 421 LLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLD-LVSGYFES 479
S+ +G D + +L TG+ + + Y+T PF S +D ++ ++
Sbjct: 424 EWPSTKDLVGFSDCVYELSTGKTREHSPHNYLTWVLPRPFNPLSRSWTTIDEWLTEATQN 483
Query: 480 EEVMDYFTRCVGMALLGGNKA-QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538
+ C A+L Q+F+H+ G GGSGKS+ MNL+ G Q I+ + +
Sbjct: 484 NQTHKQILICYAAAVLRQRADLQKFLHLIGTGGSGKSSFMNLLVALVGQQNTISLDFPSL 543
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598
+ + G + I + + + N + K+MTG D + R Y + +S
Sbjct: 544 NEKDA---------IAEAFGKALAIFPDQDSAGK-NLSNFKKMTGQDLLRGRRLYKDGFS 593
Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD-ASFAQKLETK------Y 651
+ N +F RR +++PF+ +A+ + + ++ E + Y
Sbjct: 594 FKFGGM-CVLSSNHPIFHAGSGRWLTRRVLMVPFNLAVADGNVRNLEKEFEPELSAFTSY 652
Query: 652 TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEES 711
L ++ GL+ +V E ++ +D +W++D +
Sbjct: 653 LLSIPTEEIEATLK----GLNKK--QVISSTLWESQKRSDGLASWVNDEIIFDCTAKTQI 706
Query: 712 HSLAKSYSE-------------YREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEK 758
S A+ +++ Y R+ ++ + NL + G +K++ ++
Sbjct: 707 GSNAREWNDEDYNPLKSTLFGSYCHHIRRSGRQPLTKDNFSANLIEL-LKGTLKKDVDKR 765
Query: 759 EWKSKRIIKGLKLKPAFE 776
+ R + G++L+ A +
Sbjct: 766 KTNQGRFLMGVRLRTAQD 783
>gi|229890281|sp|P0C9X1|H962R_ASFWA RecName: Full=Putative helicase C962R
Length = 962
Score = 189 bits (479), Expect = 2e-45, Method: Composition-based stats.
Identities = 104/644 (16%), Positives = 213/644 (33%), Gaps = 86/644 (13%)
Query: 207 NREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFN 266
R + L+ E+Y + W VV A+ S+ + +A +S++
Sbjct: 300 ARYLHKILNLLPPEYY-VEYPLWSNVVFAL---ANTSANYRPLAEWFSQK--------CP 347
Query: 267 YKWDT-------FDFEEIGDTAKKRSTFTSLFYHHGKLIPK-----------GLLAS--- 305
KW+T + + +K+ T S+ Y K P+ +LA
Sbjct: 348 EKWNTGGKEKLEQLWNDASRHTEKKITKRSIMYWAHKHAPQQYKEIVEQGYFSILAEYVY 407
Query: 306 ----RFSDAYNKAMFSIYKKGHFLYTADTKA---WYKK-------DKNNVYIWSLTLD-- 349
+ F+ D+ W++ ++ ++ W ++
Sbjct: 408 SYNGMLEHYMIAKVIYAMMGNKFVVDVDSNGKYVWFEFVLPGQPMNQGEIWKWRKEVNPD 467
Query: 350 ----KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKST 405
I+ + + + E + +P + N + + + + + +S K
Sbjct: 468 ELHIYISENFSRVMDRITEHIKYHLSQPHETNILNYYKKLLKAFERSKSKIFNDSFKKGV 527
Query: 406 AQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLET--GQKVKPTKELYITKSTGTPFVEG 463
+ E LD++ LG +G+L +ET + + E I + T +V
Sbjct: 528 IRQAEFLFRQRSFIQTLDTNPHLLGVGNGVLSIETIPAKLINHFHEHPIHQYTHICYVPF 587
Query: 464 EPSQEF----LDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMN 519
P + L+ + + + + A+ G K + G G +GK+ LM
Sbjct: 588 NPENPWTKLLLNALQDIIPELDARLWIMFYLSTAIFRGLKEALMLLWLGGGCNGKTFLMR 647
Query: 520 LIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIK 579
L+ G+ Y S + R A K N + +RL G ETN+++ +N +++K
Sbjct: 648 LVAMVLGDHYASKLNISLLTSYRE-TAEKPNSAFMRLKGRGYGYFEETNKSEVLNTSRLK 706
Query: 580 QMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYI----VIPF--- 632
+M +TAR S + T N + + D WRR + F
Sbjct: 707 EMVNPGDVTARELNQKQESFQ-MTATMVAASNYNFIIDTTDHGTWRRLRHYRSKVKFCHN 765
Query: 633 ----DKPIANRDASFAQKLE-----TKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAK 683
+ D F + +F + ++ + +
Sbjct: 766 PDPNNSYEKKEDPRFIHEYIMDPNCQNAFFSILVYFWEKLQKEYNGQIKKVFCPTIESET 825
Query: 684 EEERQGTDTYQAWIDDCCDIGENLWEES--HSLAKSYSEYREQELNYDRKRISTRTVTLN 741
E R+ DT +I + + + +Y+E+ +N R ++
Sbjct: 826 EAYRKSQDTLHRFITERIVESPSAETVYNLSEVVTAYAEWYNANINVKRHI--ALELSQE 883
Query: 742 LKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDNSNII 785
L+ ++ RI+KG ++ FE++ + I
Sbjct: 884 LENSVLEKYLQWS-----PNKTRILKGCRILHKFETLQPGESYI 922
>gi|229890280|sp|P0C9X3|H962R_ASFP4 RecName: Full=Putative helicase C962R
Length = 962
Score = 189 bits (479), Expect = 2e-45, Method: Composition-based stats.
Identities = 104/644 (16%), Positives = 213/644 (33%), Gaps = 86/644 (13%)
Query: 207 NREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFN 266
R + L+ E+Y + W VV A+ S+ + +A +S++
Sbjct: 300 ARYLHKILNLLPPEYY-VEYPLWSNVVFAL---ANTSANYRPLAEWFSQK--------CP 347
Query: 267 YKWDT-------FDFEEIGDTAKKRSTFTSLFYHHGKLIPK-----------GLLAS--- 305
KW+T + + +K+ T S+ Y K P+ +LA
Sbjct: 348 EKWNTGGKEKLEQLWNDASRHTEKKITKRSIMYWAHKHAPQQYKEIVEQGYFSILAEYVY 407
Query: 306 ----RFSDAYNKAMFSIYKKGHFLYTADTKA---WYKK-------DKNNVYIWSLTLD-- 349
+ F+ D+ W++ ++ ++ W ++
Sbjct: 408 SYNGILEHYMIAKVIYAMMGNKFVVDVDSNGKYVWFEFVLPGQPMNQGEIWKWRKEVNPD 467
Query: 350 ----KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKST 405
I+ + + + E + +P + N + + + + + +S K
Sbjct: 468 ELHIYISENFSRVMDRITEHIKYHLSQPHETNILNYYKKLLKAFERSKSKIFNDSFKKGV 527
Query: 406 AQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLET--GQKVKPTKELYITKSTGTPFVEG 463
+ E LD++ LG +G+L +ET + + E I + T +V
Sbjct: 528 IRQAEFLFRQRSFIQTLDTNPHLLGVGNGVLSIETIPAKLINHFHEYPIHQYTHICYVPF 587
Query: 464 EPSQEF----LDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMN 519
P + L+ + + + + A+ G K + G G +GK+ LM
Sbjct: 588 NPENPWTKLLLNALQDIIPELDARLWIMFYLSTAIFRGLKEALMLLWLGGGCNGKTFLMR 647
Query: 520 LIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIK 579
L+ G+ Y S + R A K N + +RL G ETN+++ +N +++K
Sbjct: 648 LVAMVLGDHYASKLNISLLTSYRE-TAEKPNSAFMRLKGRGYGYFEETNKSEVLNTSRLK 706
Query: 580 QMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYI----VIPF--- 632
+M +TAR S + T N + + D WRR + F
Sbjct: 707 EMVNPGDVTARELNQKQESFQ-MTATMVAASNYNFIIDTTDHGTWRRLRHYRSKVKFCHN 765
Query: 633 ----DKPIANRDASFAQKLE-----TKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAK 683
+ D F + +F + ++ + +
Sbjct: 766 PDPNNSYEKKEDPRFIHEYIMDPNCQNAFFSILVYFWEKLQKEYNGQIKKVFCPTIESET 825
Query: 684 EEERQGTDTYQAWIDDCCDIGENLWEES--HSLAKSYSEYREQELNYDRKRISTRTVTLN 741
E R+ DT +I + + + +Y+E+ +N R ++
Sbjct: 826 EAYRKSQDTLHRFITERIVESPSAETVYNLSEVVTAYAEWYNANINVKRHI--ALELSQE 883
Query: 742 LKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDNSNII 785
L+ ++ RI+KG ++ FE++ + I
Sbjct: 884 LENSVLEKYLQWS-----PNKTRILKGCRILHKFETLQPGESYI 922
>gi|237710652|ref|ZP_04541133.1| phage/plasmid primase P4 [Bacteroides sp. 9_1_42FAA]
gi|229455374|gb|EEO61095.1| phage/plasmid primase P4 [Bacteroides sp. 9_1_42FAA]
Length = 545
Score = 188 bits (478), Expect = 3e-45, Method: Composition-based stats.
Identities = 52/349 (14%), Positives = 117/349 (33%), Gaps = 25/349 (7%)
Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY 476
+ L + + + + D+ + + T + E + +
Sbjct: 106 VAGKALKPDNAIVVFNNCVFDMSARRAHSFNRRWVQTTCVPYDYKPEEHVFLWRMFLDEV 165
Query: 477 FESEEVMDYFTRCVGMALLGGNKAQR--FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
+ + +G + A+ + +RG G +GKS + I G + V N
Sbjct: 166 LPDKNMQKVLQEFLGSIFVDRRVAKMETMLVLRGSGSNGKSVVFETIMGILGRENVSNFG 225
Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEND-EINAAKIKQMTGGDCMTARLNY 593
++ + + + G R+ SE + ++ +K + G+ AR Y
Sbjct: 226 IGALITGNERKKN-----IAFINGKRLNYCSEIQALEFGKDSDTLKSLISGEPTEARPIY 280
Query: 594 GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDASFAQKLETKY 651
G+ ++ N+ ++++ RR +IPF+ I + ++ LE +Y
Sbjct: 281 GDNFTAYNIP-LLMANANQMPYLKDWSYGMRRRICIIPFEVEIPKARQKKELSRDLEAEY 339
Query: 652 TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWI---------DDCCD 702
W L+G +I+ G + + +E + + T ++ ++ D
Sbjct: 340 -PAIFNWILEGRDRFIANGYKLTDSKELENVMDEYQSESSTVMKFMYQMNYLCRYEEIAD 398
Query: 703 IGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGI 751
I W S L + Y ++ K + L + G+
Sbjct: 399 IEPK-WMSSAILYRKYCKWCRDNNA---KEENVTVFGRILSEAGYRKKR 443
>gi|237720962|ref|ZP_04551443.1| phage/plasmid primase P4 [Bacteroides sp. 2_2_4]
gi|229449797|gb|EEO55588.1| phage/plasmid primase P4 [Bacteroides sp. 2_2_4]
Length = 524
Score = 188 bits (476), Expect = 5e-45, Method: Composition-based stats.
Identities = 52/349 (14%), Positives = 118/349 (33%), Gaps = 25/349 (7%)
Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY 476
+ L + + + + D+ + + T + E + +
Sbjct: 85 VAGKALKPDNAIVVFNNCVFDMNARRAHSFNRRWVQTTCVPYDYKPEEHVFLWRMFLDEV 144
Query: 477 FESEEVMDYFTRCVGMALLGGNKAQR--FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
+ + +G + A+ + +RG G +GKS + I G + V N
Sbjct: 145 LPDKNMQKVLQEFLGSIFVDRRVAKMETMLVLRGSGSNGKSVVFETIMGILGRENVSNFG 204
Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEND-EINAAKIKQMTGGDCMTARLNY 593
++ + + + G R+ SE + ++ +K + G+ AR Y
Sbjct: 205 IGALITGNERKKN-----IAFINGKRLNYCSEIQALEFGKDSDTLKSLISGEPTEARPIY 259
Query: 594 GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDASFAQKLETKY 651
G+ ++ N+ ++++ RR +IPF+ I + ++ LE +Y
Sbjct: 260 GDNFTAYNIP-LLMANANQMPYLKDWSYGMRRRICIIPFEVEIPKARQKKELSRDLEAEY 318
Query: 652 TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWI---------DDCCD 702
W L+G +I+ G + + +E + + T ++ ++ D
Sbjct: 319 -PAIFNWILEGRDRFIANGYKLTDSKELENVMDEYQSESSTVMKFMYQMNYLCRYEEIAD 377
Query: 703 IGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGI 751
I W S L + Y ++ + K + L + G+
Sbjct: 378 IEPK-WMSSAILYRKYCKWCKDNNT---KEENVTVFGRILSEAGYRKKR 422
>gi|225419963|ref|ZP_03762266.1| hypothetical protein CLOSTASPAR_06304 [Clostridium asparagiforme
DSM 15981]
gi|225041385|gb|EEG51631.1| hypothetical protein CLOSTASPAR_06304 [Clostridium asparagiforme
DSM 15981]
Length = 629
Score = 187 bits (475), Expect = 6e-45, Method: Composition-based stats.
Identities = 56/348 (16%), Positives = 120/348 (34%), Gaps = 22/348 (6%)
Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY-FESEEVM 483
+ + +G+ ++ V T E IT + S+ ++ + +
Sbjct: 293 DANMIAFANGLYNIVDDSFVAFTPEHIITNKIRWDYNPEAYSELADKTLNKIACDDPAIR 352
Query: 484 DYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP 543
+G N+ + + G +GKST +++++ G + + + + ++
Sbjct: 353 ALLEEAIGYCFYRRNELGKAFILTGDKSNGKSTFLSMVQTLLGEENIASLDLKELGD--- 409
Query: 544 PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPAS 603
+ G I + + N A K++ G+ ++A N + + S
Sbjct: 410 ------RFKTAEMFGKLANIGDDIGDEFIANPAIFKKLVTGERVSAERKGQNPFEFNNYS 463
Query: 604 FTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQK----LETKYTLEAK-KW 658
N +++ A RR +IPFD + D F L+T +E
Sbjct: 464 -KLLFSANNIPRIKDKTGAVQRRLTIIPFDARFSADDPDFNPYIKHLLKTDEVMEYLINL 522
Query: 659 FLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSY 718
+ G+K ++ KA +E + + + +C E+ E+ K Y
Sbjct: 523 GIVGLKRVLTN-RAFTASAKVQKAMDEYEENNNPILGFFKEC--EDEDFQIENEPTNKVY 579
Query: 719 SEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRII 766
Y+E L + +S + + + I +K + K RI
Sbjct: 580 KRYQEYCLANSLQPMSNIEFSKQVNR---ILNMKVVNKTIQNKKYRIF 624
>gi|119487229|ref|ZP_01620980.1| hypothetical protein L8106_20932 [Lyngbya sp. PCC 8106]
gi|119455784|gb|EAW36919.1| hypothetical protein L8106_20932 [Lyngbya sp. PCC 8106]
Length = 842
Score = 187 bits (475), Expect = 7e-45, Method: Composition-based stats.
Identities = 88/481 (18%), Positives = 176/481 (36%), Gaps = 66/481 (13%)
Query: 320 KKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKN 379
+ + +T W + + + +WS D+ SI++ +V K F
Sbjct: 291 YENKLAFNDETNTWMRYEAEDKGVWSPESDRFIRSIISQVVEGKGIKF------------ 338
Query: 380 SKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSR-FLGEQDGILDL 438
+ + K + LE + L+ S L +G+L++
Sbjct: 339 -----------------KTQTYVKQVIECLEVDPRI-LKRKWLERSPNEVLPHHNGVLEI 380
Query: 439 ETGQKVKPTKELYITKSTGTPFVEGE-PSQEFLDLVSGYFESEEVMDYFTRCVGMA-LLG 496
+ + V+ + Y+T + + + D + + ++ C A L G
Sbjct: 381 ASSKFVEHSPLNYLTWTLPREYDPEAKDWSKINDWLDEVSQGNPMIRNLLICFANAVLTG 440
Query: 497 GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRL 556
+ Q+ +H+ G+GGSGK+T NLI G V++ NR + IR
Sbjct: 441 KSGIQKMMHLMGLGGSGKTTYSNLITDLIGENNVLDEGVEQFCTNR--------FTPIRA 492
Query: 557 MGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV 616
R V+ S+ E + N + I ++ GG+ +T + + +V +
Sbjct: 493 YQKRFVLFSDEQELPK-NISNIMKLVGGNNLTGEQKGKPAFQFR-FTGIAMLVSEHPIAQ 550
Query: 617 RNPDDAWWRRYIVIPFDKPIANRD-ASFAQKLETKYTLEAKKWFLKGVKAYISKGLD--V 673
+ W RR I +P + +A++D + +++ + L ++++ L
Sbjct: 551 GIRGNGWKRRVIPLPMNLKVADKDRRDLRAEFQSEL-PAFTNYLLSLSDEFVTQTLRGVS 609
Query: 674 DIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESH------------SLAKSYSEY 721
DIPE C + R D+ AW++DC + +L SY+++
Sbjct: 610 DIPE-CKLQFWQSRLREDSIAAWLNDCIICDPEAQTQMGGNKNEADNGTPQTLFGSYADF 668
Query: 722 REQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDN 781
++ + S + L + G+ E +S I G++L+ E DD+
Sbjct: 669 CKRSGMNPK---SVTRFSPELIELC-QSGLSWEVQRFRTRSATQISGIRLRA--EGQDDD 722
Query: 782 S 782
Sbjct: 723 I 723
>gi|291289516|emb|CBH29173.1| BA71V-C962R [African swine fever virus E75]
Length = 669
Score = 187 bits (474), Expect = 7e-45, Method: Composition-based stats.
Identities = 103/641 (16%), Positives = 212/641 (33%), Gaps = 80/641 (12%)
Query: 207 NREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTY----DE 262
R + L+ E+Y + W VV A+ S+ + +A +S++ +
Sbjct: 7 ARYLHKILNLLPPEYY-VEYPLWSNVVFAL---ANTSANYRPLAEWFSQKCPEKWNTGGK 62
Query: 263 ENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPK-----------GLLAS------ 305
E W+ + +K+ T S+ Y K P+ +LA
Sbjct: 63 EKLEKLWN-----DASRHTEKKITKRSIMYWAHKHAPQQYKEIVEQGYFSILAEYVYSYN 117
Query: 306 -RFSDAYNKAMFSIYKKGHFLYTADTKA---WYKK-------DKNNVYIWSLTLD----- 349
+ F+ D+ W++ ++ ++ W ++
Sbjct: 118 GMLEHYMIAKVIYAMMGNKFVVDVDSNGKYVWFEFVLPGQPMNQGEIWKWRKEVNPDELH 177
Query: 350 -KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQS 408
I+ + + + E + +P + N + + + + + +S K +
Sbjct: 178 IYISENFSRVMDRITEHIKYHLSQPHETNILNYYKKLLKAFERSKSKIFNDSFKKGVIRQ 237
Query: 409 LEAGSIFSITSDLLDSSSRFLGEQDGILDLET--GQKVKPTKELYITKSTGTPFVEGEPS 466
E LD++ LG +G+L +ET + + E I + T +V P
Sbjct: 238 AEFLFRQRSFIQTLDTNPHLLGVGNGVLSIETIPAKLINHFHEHPIHQYTHICYVPFNPE 297
Query: 467 QEF----LDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIK 522
+ L+ + + + + A+ G K + G G +GK+ LM L+
Sbjct: 298 NPWTKLLLNALQDIIPELDARLWIMFYLSTAIFRGLKEALMLLWLGGGCNGKTFLMRLVA 357
Query: 523 YAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMT 582
G+ Y S + R A K N + +RL G ETN+++ +N +++K+M
Sbjct: 358 MVLGDHYASKLNISLLTSCRE-TAEKPNSAFMRLKGRGYGYFEETNKSEVLNTSRLKEMV 416
Query: 583 GGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYI----VIPF------ 632
+TAR S + T N + + D WRR + F
Sbjct: 417 NPGDVTARELNQKQESFQ-MTATMVAASNYNFIIDTTDHGTWRRLRHYRSKVKFCHNPDP 475
Query: 633 -DKPIANRDASFAQKLE-----TKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEE 686
+ D F + +F + ++ + + E
Sbjct: 476 GNPYEKKEDPRFIHEYIMDPDCQNAFFSILVYFWEKLQKEYNGQIKKVFCPTIESETEAY 535
Query: 687 RQGTDTYQAWIDDCCDIGENLWEES--HSLAKSYSEYREQELNYDRKRISTRTVTLNLKQ 744
R+ DT +I + + + +Y+E+ +N R ++ L+
Sbjct: 536 RKSQDTLHRFITERVVESPSAETVYNLSEVVTAYAEWYNANINVKRHI--ALELSQELEN 593
Query: 745 KGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDNSNII 785
++ RI+KG ++ FE++ + I
Sbjct: 594 SVLEKYLQWS-----PNKTRILKGCRILHKFETLQPGESYI 629
>gi|296393232|ref|YP_003658116.1| phage/plasmid primase [Segniliparus rotundus DSM 44985]
gi|296180379|gb|ADG97285.1| phage/plasmid primase, P4 family [Segniliparus rotundus DSM 44985]
Length = 633
Score = 186 bits (473), Expect = 9e-45, Method: Composition-based stats.
Identities = 58/389 (14%), Positives = 121/389 (31%), Gaps = 35/389 (8%)
Query: 404 STAQSLEAGSIFSITSDLLDSSSRF-------------LGEQDGILDLETGQKVKPTKEL 450
+ L+A + LD+ + +G+L + + ++ T E
Sbjct: 113 KVSSVLDALRAVVLMDGGLDAPKWIGASGARRPPAGEVVACANGLLHVPSRTMIEHTPEF 172
Query: 451 YITKSTGTPFVEGEPSQ-EFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRG 508
+ + + P +L + + + + G L G Q+ + + G
Sbjct: 173 FTRTAVPFDYNPSAPEPKRWLGFLQSVWPGDADSVALLQEFFGYVLSGRTDMQKILLVVG 232
Query: 509 VGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISET- 567
SGK T+ ++ G + + N L L+G + ++ +
Sbjct: 233 PPRSGKGTIARVLIALVGKANAAAPTLASL---------GTNFGLSPLLGKPLAVVGDAR 283
Query: 568 --NENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625
++ ++G D +T ++ P IV N+ + + A +
Sbjct: 284 LGGAGTRQVVERLLSISGEDWLTVDRKNKEPWT-GPIPARFVIVSNELPRLSDASGAIAK 342
Query: 626 RYIVIPFDKPI-ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKE 684
R++V+ + D L + W L G++ G A
Sbjct: 343 RFVVLTMAQSFLGKEDHRLTADLLEEL-PGILAWSLDGLERLARNG-SFTRTASSQDATR 400
Query: 685 EERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQ 744
E A++ + C I + E L ++ + EQ K ++ +L +
Sbjct: 401 ELEDLASPVAAFLREHCVIDPDGTVEKDKLYARWAVWCEQNG---LKPTNSAMFGRDL-R 456
Query: 745 KGFIGGIKREKIEKEWKSKRIIKGLKLKP 773
F G K R G++LK
Sbjct: 457 AAFPGLGDARPRNTGSKRPRHHVGIRLKT 485
>gi|168032336|ref|XP_001768675.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162680174|gb|EDQ66613.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 419
Score = 186 bits (473), Expect = 1e-44, Method: Composition-based stats.
Identities = 65/320 (20%), Positives = 116/320 (36%), Gaps = 59/320 (18%)
Query: 419 SDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVE----GEPSQEFLDLVS 474
+LLDS +G + G+ D + + YIT ST FV E + E LDL++
Sbjct: 118 EELLDSKRDVIGMKSGVYDFTEDRFRMMELDDYITLSTRISFVPLDYNSEATNEVLDLLA 177
Query: 475 GYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
F +E++ YF R + L G N + F G G + K+ +++LI+ FG+ Y I
Sbjct: 178 KVFSNEDIRRYFMRFISSCLEGRNTNKIFSIWSGSGDNRKTIMVSLIEQVFGD-YAIKMP 236
Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
S +M+ R ++TG D + R Y
Sbjct: 237 TSLLMEKR-------------------------------------EITGNDSLYVRGLYK 259
Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN-------------RDA 641
+ P + ++ N+ + D A W R ++PF + +D
Sbjct: 260 EG-TIIPQTAKFILIANRIPQMSMFDKAVWSRIRIMPFVSTFVDKIELSHDLLTTHLKDI 318
Query: 642 SFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCC 701
+F+ K+ + K ++ K Y++ GL + P E + + ++
Sbjct: 319 NFSNKIYF-FAPVFMKLVIEEYKQYLTYGL--EEPNEVKDCTEIICVSNNIFGQFLSANV 375
Query: 702 DIGENLWEESHSLAKSYSEY 721
+ L Y +
Sbjct: 376 EKNNKNIVAIKELYDLYKYW 395
>gi|126661282|ref|ZP_01732353.1| hypothetical protein CY0110_01270 [Cyanothece sp. CCY0110]
gi|126617438|gb|EAZ88236.1| hypothetical protein CY0110_01270 [Cyanothece sp. CCY0110]
Length = 1056
Score = 186 bits (471), Expect = 2e-44, Method: Composition-based stats.
Identities = 69/534 (12%), Positives = 156/534 (29%), Gaps = 50/534 (9%)
Query: 279 DTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDK 338
+ + +PK S+ F K ++ T W+
Sbjct: 298 WGNRSVEPASIKITKLEHELPKW------SEEGLTLYFEKLYKDRLIFEDKTGDWHLYGA 351
Query: 339 NNVYIW----SLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQ 394
IW + L++ + L E + + K+S R +
Sbjct: 352 EKEGIWGQISKIQLERRIILELRELKQQFEQINGQIALAIKSVKDSNRSRDEKKEIIDQL 411
Query: 395 NVEENSKAKSTAQSLEA-----GSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKE 449
++ + + T +E I + ++ + ++G+LD+ET +
Sbjct: 412 KAQKPTYREITINFVEKLGKKLSRILLVKEMACNAHKGLIPFKNGVLDIETRDLWPHSPT 471
Query: 450 LYITKSTGTPFVEGEPSQEFLDLVSGYFESEE-VMDYFTRCVGMALLGGNKAQRFIHIRG 508
Y T S + + + + +E +++ + + G Q+F+ + G
Sbjct: 472 NYFTWSLPYDYNPLATGEPIKQWLLEMMQGDESLVELIRAYLHGVVTGRADWQKFLELIG 531
Query: 509 VGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN 568
GG+GKSTL+ L G + ++ + R+V++++
Sbjct: 532 PGGTGKSTLIRLAIALVGFSNCHVTTLKRLETSK--------FETANIKDKRLVLVTDAE 583
Query: 569 ENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYI 628
+ +K +TG D + I N+H+ + RR I
Sbjct: 584 RYTG-DVTTLKALTGEDSLPYEKKMQQATGGFKPDCLVIIAGNEHIKTADYTSGLQRRRI 642
Query: 629 VIPFDKPIANRD-ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKE--- 684
+ + I+ + + + ++ G ++ + E A +
Sbjct: 643 TVGMKRKISEENQKNLIKHDNQGNISGEFVPYIPGFLNWVLEMESESASECIKNAHKRCV 702
Query: 685 -------EERQGTDTYQAWIDDCCDIGENLWEESHSLAKS--------------YSEYRE 723
E + AW+++ + + S Y Y
Sbjct: 703 KLTLERIESMVENNPIAAWLNENIIYDPDSYTHVGKAIASKENDEVYVGASKWLYPNYCA 762
Query: 724 QELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFES 777
IS + L + + ++ I+GLK++ +
Sbjct: 763 FCEGIKVNPISLNRFSTLLLDLCNHQLNLGDVAKDRNRNGVFIQGLKIRDHLDD 816
>gi|290959763|ref|YP_003490945.1| NTP-binding protein [Streptomyces scabiei 87.22]
gi|260649289|emb|CBG72404.1| putative NTP-binding protein [Streptomyces scabiei 87.22]
Length = 485
Score = 186 bits (471), Expect = 2e-44, Method: Composition-based stats.
Identities = 57/421 (13%), Positives = 135/421 (32%), Gaps = 35/421 (8%)
Query: 330 TKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNT 389
+W + N + D++ ++ L V R W T
Sbjct: 42 RASWMRW--NGTCWREVDDDQVRKAMYERLEHAVYQVP--------AKDGETEERDWAPT 91
Query: 390 DYRRQNVEENSKAKSTAQSLEAGSI-FSITSDLLDSSSRFLGEQDGILDLETGQKVKPTK 448
+ N+ + + + D + Q+G+L + + T
Sbjct: 92 KPKISNLLDALGSIVLLPTDTDTPAWIDDHGDTGQEHGPIVACQNGLLRIRDRALMPHTP 151
Query: 449 ELYITKSTGTPFVEGEPSQEFLDLVSGYFESE-EVMDYFTRCVGMALLGGNKAQRFIHIR 507
E + S + + + + ++ + + + + G + G Q+ + +
Sbjct: 152 EFFNNVSIPYAYDPSATAPTWDNFLAQLWPDDPDSIAALQEWFGYVISGRTDQQKILLMV 211
Query: 508 GVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISET 567
G SGK T+ ++K G + + + + N L L+G + +IS+
Sbjct: 212 GPTRSGKGTIARVLKALVGKENLAGPTLAGL---------GTNFGLSTLIGKPLGVISDA 262
Query: 568 NENDEINAAKIKQM---TGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWW 624
+ N ++++ +G D + Y ++ + I+ N+ +
Sbjct: 263 RLSGNDNTQVVERLLTISGEDTIDIDRKYRQPWTGKLPT-RLVILSNELPHFGDSSGVIA 321
Query: 625 RRYIVIPFDKPIA---NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLK 681
R+I++ + ++ D + +L + W L+G+ G + P +
Sbjct: 322 NRFILL--NTRLSWLGKEDPTLTDRLIAE-VPGIINWALEGLARLQRTG-RITEPASSRE 377
Query: 682 AKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLN 741
A R A++ + C G +L + ++ E K + + N
Sbjct: 378 AVTTMRDTASPTSAFVRERCTTGPTCSVPVEALWAVWRDWAEDNG---VKPGTKQVFGRN 434
Query: 742 L 742
L
Sbjct: 435 L 435
>gi|315651057|ref|ZP_07904091.1| phage/plasmid primase [Eubacterium saburreum DSM 3986]
gi|315486647|gb|EFU76995.1| phage/plasmid primase [Eubacterium saburreum DSM 3986]
Length = 728
Score = 185 bits (470), Expect = 2e-44, Method: Composition-based stats.
Identities = 57/398 (14%), Positives = 142/398 (35%), Gaps = 36/398 (9%)
Query: 406 AQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEG-- 463
+ + +++ +++ ++G+ +++T ++ T+ T ++E
Sbjct: 345 LMLADVDHM--ANEKNFNTNEKYINFKNGLYNIDTKALEPHNADILYTRQVNTEYIESYT 402
Query: 464 -EPSQEFLDLVSGYFESEE----VMDY--FTRCVGMALLG--GNKAQRFIHIRGV-GGSG 513
F + +S + Y G+A+ G+K ++ + + G +G
Sbjct: 403 ITEYHTFTKFIRDLCKSADGGIDWQAYKSLQEVAGLAISNIYGHKTKKAVFLYSPVGNTG 462
Query: 514 KSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI 573
KS + L+ + G + + + ++ +++ + R+++ + ++ D
Sbjct: 463 KSQFLGLLGHLIGQENITSIPLQNMNEDKG------RFAFANAGLVRLIMNGDQSKADVK 516
Query: 574 NAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDA--WWRRYIVIP 631
+++ K +TGGD + G I N ++ + D +RR ++P
Sbjct: 517 DSSIFKSVTGGDAIKVEAK-GKDIRTLVFKGLVVIACNDLPYIAD-DKGEHIYRRMYIVP 574
Query: 632 FDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQG 689
I RD + K+ K W ++G+ + + + R+
Sbjct: 575 CTHTIEEKERDPNILDKMI-KELPAIANWGIEGLHRLRANNYNFTEIAAGAEVIANYRKN 633
Query: 690 TDTYQAWIDDC---CDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746
+DT +++ D L +Y++Y + R+ + R + +
Sbjct: 634 SDTVYSFLMDEGYIITKNPADKVSKQELLTAYNKYCQDNG---RQAVGVRQFRDRIVK-- 688
Query: 747 FIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDNSNI 784
+ G K + +GLKL F V++ I
Sbjct: 689 -LTGYTIHKTRLKNILASYCEGLKLSDEFIPVNEGQAI 725
>gi|75760988|ref|ZP_00740993.1| DNA primase [Bacillus thuringiensis serovar israelensis ATCC 35646]
gi|74491531|gb|EAO54742.1| DNA primase [Bacillus thuringiensis serovar israelensis ATCC 35646]
Length = 545
Score = 185 bits (469), Expect = 3e-44, Method: Composition-based stats.
Identities = 48/342 (14%), Positives = 123/342 (35%), Gaps = 25/342 (7%)
Query: 431 EQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRC 489
++G+ +LET Q T E+ ++ + ++ + +
Sbjct: 219 VKNGVFNLETWQLEDFTPEIITRNKIPVAYIPDAYYKVTDKTLNKIAVNDKTIRSILEEI 278
Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549
+G L N+ + G G +GKS+ + +I+ G + + + +++ Q
Sbjct: 279 LGYILFRRNEFAATFILTGNGSNGKSSYLKIIRQLVGEENASSLDLNELDQ--------- 329
Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609
L G I + + ++ K+++ G+ + + + + +
Sbjct: 330 RFKTAELFGKLANIGDDIGKGYIKESSVFKKLSTGETLNVERKGKDPFDFTNYA-KLIFS 388
Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDKPI----ANRDASFAQKLETKYTLE-AKKWFLKGVK 664
N+ + + D RR ++PF + D KL + +++ LK +K
Sbjct: 389 ANEMPRINDFTDGLGRRLQIVPFKAKFTPEGEDYDPFITDKLLSDESMQYILILALKSLK 448
Query: 665 AYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQ 724
+ + + + + ++ + ++++ EN+ E + Y +Y+
Sbjct: 449 RLLEE-KKFTKSKAVEEELVKYQEENNPIISFVN-----NENIELERSVVGDVYLQYKVY 502
Query: 725 ELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRII 766
+ + +S + + Q + G K + + K+KRI
Sbjct: 503 CVENGFQSVSNINFSKQISQ---LFGYKSHVQKVDGKNKRIF 541
>gi|228904529|ref|ZP_04068612.1| Phage / plasmid primase, P4 [Bacillus thuringiensis IBL 4222]
gi|228855093|gb|EEM99669.1| Phage / plasmid primase, P4 [Bacillus thuringiensis IBL 4222]
Length = 624
Score = 185 bits (469), Expect = 3e-44, Method: Composition-based stats.
Identities = 48/342 (14%), Positives = 123/342 (35%), Gaps = 25/342 (7%)
Query: 431 EQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRC 489
++G+ +LET Q T E+ ++ + ++ + +
Sbjct: 298 VKNGVFNLETWQLEDFTPEIITRNKIPVAYIPDAYYKVTDKTLNKIAVNDKTIRSILEEI 357
Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549
+G L N+ + G G +GKS+ + +I+ G + + + +++ Q
Sbjct: 358 LGYILFRRNEFAATFILTGNGSNGKSSYLKIIRQLVGEENASSLDLNELDQ--------- 408
Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609
L G I + + ++ K+++ G+ + + + + +
Sbjct: 409 RFKTAELFGKLANIGDDIGKGYIKESSVFKKLSTGETLNVERKGKDPFDFTNYA-KLIFS 467
Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDKPI----ANRDASFAQKLETKYTLE-AKKWFLKGVK 664
N+ + + D RR ++PF + D KL + +++ LK +K
Sbjct: 468 ANEMPRINDFTDGLGRRLQIVPFKAKFTPEGEDYDPFITDKLLSDESMQYILILALKSLK 527
Query: 665 AYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQ 724
+ + + + + ++ + ++++ EN+ E + Y +Y+
Sbjct: 528 RLLEE-KKFTKSKAVEEELVKYQEENNPIISFVN-----NENIELERSVVGDVYLQYKVY 581
Query: 725 ELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRII 766
+ + +S + + Q + G K + + K+KRI
Sbjct: 582 CVENGFQSVSNINFSKQISQ---LFGYKSHVQKVDGKNKRIF 620
>gi|134287274|ref|YP_001110970.1| ATPase [Heliothis virescens ascovirus 3e]
gi|133722182|gb|ABO37304.1| ATPase [Heliothis virescens ascovirus 3e]
Length = 1052
Score = 184 bits (468), Expect = 4e-44, Method: Composition-based stats.
Identities = 76/332 (22%), Positives = 136/332 (40%), Gaps = 19/332 (5%)
Query: 322 GHFLYTADTKAWYKKDKNNVYIWSLTL---DKITASIMNFLVSMKED-VFDLSEEPEDNN 377
G +Y + W + I DK + +L + E + + ED+N
Sbjct: 568 GKVMYQFNGNIWKPVRNDEALIRKELPIWYDKFEEHVSEYLERLAESGMGAVPHGDEDSN 627
Query: 378 KN------SKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGE 431
+ + R + + + +N S + ++L + S +D + +
Sbjct: 628 GGRGPSVVTVAKRKFLSVRRKCKNSAPQSGVITQIRALNTHDAGAYKSTKMDDNDNIIAF 687
Query: 432 QDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE-----FLDLVSGYFESEEVMDYF 486
+D + +T K T E I++ +V + + D + F EV +YF
Sbjct: 688 KDMVFCRDTLTLRKGTPEDMISRCLNCNYVPYDELTDEVRKFVNDFFTSLFPDPEVKEYF 747
Query: 487 TRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEA 546
V G N ++++ GVG +GKS L+ + + G + S ++ N+ +
Sbjct: 748 LLSVAQIFRGSNIFKQYMVWTGVGNNGKSVLIRMFECLLGPLL-VKLSKSVLISNKM-DV 805
Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESP--ASF 604
G NP + +L G R+ + E +D+IN + K ++G D AR Y + P A F
Sbjct: 806 GSVNPDMCKLQGVRLAVTDEIAGSDDINVGQAKLLSGNDTFMARDLYMKSAEMEPIKAQF 865
Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI 636
P IV N +R PD+A W+R+ +IPFD
Sbjct: 866 IPIIVCNDLPSLREPDEAAWKRFHIIPFDSYF 897
>gi|71900788|ref|ZP_00682908.1| Poxvirus D5 protein [Xylella fastidiosa Ann-1]
gi|71729465|gb|EAO31576.1| Poxvirus D5 protein [Xylella fastidiosa Ann-1]
Length = 258
Score = 184 bits (467), Expect = 6e-44, Method: Composition-based stats.
Identities = 48/248 (19%), Positives = 97/248 (39%), Gaps = 27/248 (10%)
Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
+ + L G R++ ++ET+E + +KQ TGGD + AR + + P +
Sbjct: 16 DRHPTEIADLAGRRMMTVNETSEGGILREGFVKQATGGDSLKARHMRSDFFEFRP-THKL 74
Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA------------NRDASFAQKLETKYTLE 654
++ N ++ D W R ++IPF D +KL +
Sbjct: 75 QLLTNHKPVIKGQDVGIWSRLMLIPFKARFGTAEEIEAGIAQYPIDHKITEKLAAERE-G 133
Query: 655 AKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEE---- 710
W + G + GL+ PE+ A ++ + D +I++ C +G E+
Sbjct: 134 VLAWVVAGAVEWCKNGLNP--PEIVRNASKDYQTEQDRIAQFIEEECVLGMEHEEKLTAP 191
Query: 711 -SHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK--GFIGGIKREKI-EKEWKSKRII 766
L +Y+++ + Y +S L++ F + +E + + + +I
Sbjct: 192 MGGGLYPAYTQWCKDSGVY---PLSKVRFLGELERCVPDFRKKVTKETVGTGKRRDLVVI 248
Query: 767 KGLKLKPA 774
+G+ L A
Sbjct: 249 QGVGLVDA 256
>gi|154503078|ref|ZP_02040138.1| hypothetical protein RUMGNA_00901 [Ruminococcus gnavus ATCC 29149]
gi|153796319|gb|EDN78739.1| hypothetical protein RUMGNA_00901 [Ruminococcus gnavus ATCC 29149]
Length = 601
Score = 184 bits (466), Expect = 7e-44, Method: Composition-based stats.
Identities = 63/435 (14%), Positives = 145/435 (33%), Gaps = 31/435 (7%)
Query: 327 TADTKAWYKKDKNNVYIWSLT---LDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSP 383
+ ++K D +D I ++ F+ ++ ED
Sbjct: 143 DPELSRFHKFDSKGKVTGVRDMEIVDYIVENVSFFVRGEIPYYYEHGVFIEDAKGVKLKY 202
Query: 384 RFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSS-RFLGEQDGILDLETGQ 442
R R N +S + L S L+ ++ ++ D+ +G+
Sbjct: 203 RIQKLIYRDRVN---SSTIQRVYNLLITQPQIYRNSYELNKQPAHWINFRNAYYDVLSGE 259
Query: 443 KVKPTKELYITKSTGTPFVEGEP------SQEFLDLVSGYFESEEVMDYFTRCVGMALLG 496
++ + P+ + + + F G +
Sbjct: 260 LIEHDPKYLTINQIPFPYYPEDREKVLEGGANIRKYLDSSIPDKIEQQMFWEYFGYCMTT 319
Query: 497 GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRL 556
+ Q+F+ ++G GG+GKS + LI++ GN+ + D+ + +
Sbjct: 320 DTQFQKFLMLKGNGGTGKSVAVALIQHVIGNENTSSISLQDLNKRFYATG---------M 370
Query: 557 MGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLF- 615
G + ++ +K+ G D + + A N+
Sbjct: 371 YGKLLNACADIPCKAMDTTDVLKKAVGEDTLLYEKKGKDA-VFYKAYAKLLFSTNEMPQN 429
Query: 616 VRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDV 673
+ + DA++RR +V+ ++ I RD +K++ + + +K +G ++
Sbjct: 430 LEDKSDAFYRRLLVLDMNQMIPGEERDIRLKEKIKAEADYAIHM-AVIALKDVYERG-EL 487
Query: 674 DIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRI 733
E + E R+ +D+ A++D+ E + + + Y EY + DR+
Sbjct: 488 IESEHSKECVRELRRASDSVCAFLDEKLVQAEGKRMKRSEVYRMYEEYCKDN---DRQGH 544
Query: 734 STRTVTLNLKQKGFI 748
+++ KG+
Sbjct: 545 GKSGFFKSMEGKGYQ 559
>gi|218131558|ref|ZP_03460362.1| hypothetical protein BACEGG_03178 [Bacteroides eggerthii DSM 20697]
gi|217986490|gb|EEC52827.1| hypothetical protein BACEGG_03178 [Bacteroides eggerthii DSM 20697]
Length = 531
Score = 184 bits (466), Expect = 7e-44, Method: Composition-based stats.
Identities = 54/333 (16%), Positives = 118/333 (35%), Gaps = 20/333 (6%)
Query: 424 SSSRFLGEQDG--ILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEE 481
+ ++G ++ + + K + + EF ++ +E
Sbjct: 182 KDEVKINLKNGTFVISKDKQELRDFDKRDFFKYQLPFEYNPEATCDEFKAFLNEVLPEKE 241
Query: 482 VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQN 541
+G K ++ + ++G G +GKS + +++ G + S++
Sbjct: 242 SQMILAEYLGYIFTQNLKLEKCLILKGEGSNGKSVIFEIVQALLGEHNTCSYTISNLCNE 301
Query: 542 RPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESP 601
+L + SE IN K++ + + AR YG+ +
Sbjct: 302 NGYFR-------AQLGNYLLNYSSELG-GKNINPDLFKKLISNEPIDARSPYGHPFILRH 353
Query: 602 ASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWF 659
NK A+ RR+I++ F+ I +D A+++ +K W
Sbjct: 354 YG-KFMFNMNKFPNNIEFTHAYLRRFIILNFEVIIPDEEQDKHLAERIISKELSGIFNWV 412
Query: 660 LKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDI---GENLWEESHSLAK 716
L+G+ + + + P+ + EE R +D+ ++++ + N +
Sbjct: 413 LEGLGRLLKQQQFTESPKA-KELLEEMRFESDSVAQFLEEKQYLPSTSGNDKILLKRFRE 471
Query: 717 SYSEYRE--QELNYDRKRISTRTVTLNLK-QKG 746
Y Y + + +K STR +L + QKG
Sbjct: 472 EYQAYCHIKKLIPVGQKEFSTRIKSLKFEIQKG 504
>gi|10954551|ref|NP_044372.1| hypothetical protein pRN1_p6 [Sulfolobus islandicus]
gi|1345114|gb|AAC44111.1| ORF904; Method: conceptual translation supplied by author
[Sulfolobus islandicus]
gi|147842920|dbj|BAF62550.1| rep904 [synthetic construct]
Length = 904
Score = 184 bits (466), Expect = 7e-44, Method: Composition-based stats.
Identities = 134/847 (15%), Positives = 267/847 (31%), Gaps = 116/847 (13%)
Query: 9 QAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQ---LLSSEKIDKLP---ACGFGFVCGVGE 62
AK + +GF +IP+ K+P L +W++ + S E+ + G+ + G+
Sbjct: 46 YAKWFLEHGFNIIPIDPESKKPV-LKEWQKYSHEMPSDEEKQRFLKMIEEGYNYAIPGGQ 104
Query: 63 QPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKT---- 118
+ L D +SK++ A + E L + I + I K
Sbjct: 105 KGLVILDFESKEKLKAWIGESALEELCRKTLCT--NTVHGGIHIYVLSNDIPPHKINPLF 162
Query: 119 TESTQGHLDILGCGQYFVAYN-----IHPKTKKEYTWTTPPHRFKV---EDTPLLSEEDV 170
E+ +G +D+ Y + +H T K W + + +S+ D+
Sbjct: 163 EENGKGIIDLQSYNSYVLGLGSCVNHLHCTTDKC-PWKEQNYTTCYTLYNELKEISKVDL 221
Query: 171 EYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTN--------REITAFLSCFGEEFY 222
+ L +F E L +K W + +E+ S E
Sbjct: 222 KSLLRFLAEKGKRLG--ITLSKTAKEWLEGKKEEEDTVVEFEELRKELVKRDSGKPVEKI 279
Query: 223 ----------------------------NGSHDEWIPVVMAVHHETRGSSKGKEIARRWS 254
+ S +W ++ + H K E+
Sbjct: 280 KEEICTKSPPKLIKEIICENKTYADVNIDRSRGDWHVILYLMKHGVTDPDKILELL---- 335
Query: 255 KQGSTYDEENFNYKWDTFDFEEI----GDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDA 310
+ N KW+T + I + K+ K K LL ++
Sbjct: 336 ---PRDSKAKENEKWNTQKYFVITLSKAWSVVKKYLEAKRKAQKDKSTAKALLIEAIAEE 392
Query: 311 -YNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDL 369
++ + + L + + K ++ D+ I+N + ++
Sbjct: 393 VLHEHFLVTFIQTDQLKESKIGLFRFNKKKGIF---EPFDERIEKIINVKLEEYKEFPLG 449
Query: 370 SEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLE--AGSIFSITSDLLDSSSR 427
S D ++ ++ + +R +EE+ + +LE + +
Sbjct: 450 S----DKSRVIRNIKEEIMRRTQRLLLEESLRIAFRNGTLEWDSKGVTWYDVKERTPKVY 505
Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP---SQEFLDLVSGYFESEEVMD 484
+D E + K +E L+ + + + V+
Sbjct: 506 SFN----YVD---WNLKIEEIEKFNMKEITVEDIENLARRVCPRSLETFKQWVDDKWVLL 558
Query: 485 YFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544
+ +G + I + G G +GKST +NL+ G + V IM++
Sbjct: 559 F--EVIGYTFYPKYIFNKAILLTGAGANGKSTFLNLLLKILGQKNVSAMPLKRIMESDRF 616
Query: 545 EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604
+ I L + SE N K++TG D + + + + +
Sbjct: 617 AS-------IELFHKLANVSSELFAFKITNTDLFKKLTGEDYIEGQKKFRDPIYFINYA- 668
Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVK 664
F N+ V + +WRR+IVI F F + + +
Sbjct: 669 KLFNATNELPVVSDQSYGFWRRWIVIEFPHQFPPDPNFFDKTFTVEEVEGVITVAVIAFA 728
Query: 665 AYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE--------NLWEESHSLAK 716
+ + D + KE + TD+ A++ + + +L+ + +
Sbjct: 729 RVLQQ-KKFDFEDSSANVKELWERKTDSVYAFVKELLETERAEYDPANGDLFMPTEDFYQ 787
Query: 717 SYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFE 776
+Y E+ E+ D K S VT L+ K I ++K + K G++LK
Sbjct: 788 AYLEWSEEN---DTKAESKAVVTQRLQSK---FRITKDKKKINGKRVWCYVGIRLKNNNI 841
Query: 777 SVDDNSN 783
S +
Sbjct: 842 STGGGQD 848
>gi|144900032|emb|CAM76896.1| gp9a [Magnetospirillum gryphiswaldense MSR-1]
Length = 896
Score = 183 bits (464), Expect = 1e-43, Method: Composition-based stats.
Identities = 54/359 (15%), Positives = 128/359 (35%), Gaps = 31/359 (8%)
Query: 423 DSSSRFLGEQDGIL----DLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF- 477
D + + ++G L D T + + + Y+T + F + F
Sbjct: 548 DEPAPVINCRNGELWISGDGST-RLLPHRFDTYLTYVLDVDYDPAATCPRFDRALLDIFA 606
Query: 478 ---ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
+ ++ +F G A+ + +RG G +GK+ LM I+
Sbjct: 607 RSTDPADMARHFMEFFGYAIQPRRDIACYFMLRGQGNNGKTKLMQTIERLI--------N 658
Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
I +R ++ L G I++ + + + + +K+++ +T +L +
Sbjct: 659 KRAIYSDRMANIESDRFAIGSLAGKLILLDDDVDTDTLLPDGFLKKVSERKILTGQLKFK 718
Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYT 652
+ + A+ P ++ N + + RR +IPFD+ A++D +
Sbjct: 719 DAFEFV-ATCLPVMLANNYPRCSDLSWGQRRRAKIIPFDRIFTDADKDDRLFPGIWANEL 777
Query: 653 LEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESH 712
++G++ + + P C KA + + +I++ C +
Sbjct: 778 PGVLNRAIEGLQR-LRQRSGFAEPTDCRKAMNDWLAHANPLAGFIEETCRADLAASVPTS 836
Query: 713 SLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771
+ + E+ E+ R + T+ NL+ G+ + ++ G+++
Sbjct: 837 AFYTRFREWAEEAG--IRNIPARNTIKRNLENLGYRVA--------HSSAGSVVHGIEI 885
>gi|293400042|ref|ZP_06644188.1| putative nucleoside triphosphatase, D5 family [Erysipelotrichaceae
bacterium 5_2_54FAA]
gi|291306442|gb|EFE47685.1| putative nucleoside triphosphatase, D5 family [Erysipelotrichaceae
bacterium 5_2_54FAA]
Length = 628
Score = 183 bits (464), Expect = 1e-43, Method: Composition-based stats.
Identities = 64/388 (16%), Positives = 146/388 (37%), Gaps = 26/388 (6%)
Query: 389 TDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTK 448
+ + VE+ S K++ + + I + S + ++GILD+ TG +K ++
Sbjct: 256 REIEKVMVEQISSLKTSQRKEVLNHLLLICDEAELSPPHLIPFRNGILDVLTGDLLKYSE 315
Query: 449 ELYITKSTGTPFVEGEPSQEFLDLVSGY-FESEEVMDYFTRCVGMALLGGNKAQ--RFIH 505
+ +T F S+ DL+ +E+ + +G N +
Sbjct: 316 SIIVTNKIPWDFNINAYSELADDLMDRISCNDKEIRNILEEVIGSCFYRSNTLAGGKSFI 375
Query: 506 IRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIIS 565
+ G G +GKST +++I GN + + ++ A S +RL +
Sbjct: 376 LTGTGSNGKSTFISIINTILGNNNISAIDMKNL---------DAKFSTVRLYKKLANLGD 426
Query: 566 ETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625
+ + + + + K++ GD + A + +P N+ +++ A R
Sbjct: 427 DISGEFKSDTSTFKKIVTGDKVEAEEKGQPKFEFNPYC-KLIFSANEIPRMKDETGAAQR 485
Query: 626 RYIVIPFDKPIANRDASFAQ----KLETKYTLEAKKWF-LKGVKAYISKGLDVDIPEVCL 680
R++++PF+ + D + KL+ + +E + G+K ++
Sbjct: 486 RFMIVPFNATFSENDDGYDPQIMWKLKNQQCIEYFILLGINGLKRVLTN-KKFSSSTKVQ 544
Query: 681 KAKEEERQGTDTYQAWIDDCCDIGEN-LWEESHSLAKSYSEYREQELNYDRKRISTRTVT 739
K EE + ++I++C + + L E + Y Y +N ++ +
Sbjct: 545 KELEEYSIRNNPLLSFINECEETDQQILNEPVGDVYGKYQGYC---INNGYVPLAKNEFS 601
Query: 740 LNLKQKGFIGGIKREKIEKEWKSKRIIK 767
+++ IK + + K + +
Sbjct: 602 KRMQR---QLDIKTVRHVIKGKKVTVFE 626
>gi|218203882|ref|YP_002364737.1| phage/plasmid primase, P4 family [Cyanothece sp. PCC 8801]
gi|218169669|gb|ACK68405.1| phage/plasmid primase, P4 family [Cyanothece sp. PCC 8801]
Length = 1172
Score = 183 bits (464), Expect = 1e-43, Method: Composition-based stats.
Identities = 92/581 (15%), Positives = 187/581 (32%), Gaps = 87/581 (14%)
Query: 239 ETRGSSKGKEI------ARRWSKQGSTYDEENFNYK-W-------DTFDFEEIGDTAKKR 284
T G+ I A WS+ E + W + D + + +
Sbjct: 376 ATHGTDSDAAIKKVLEEAIAWSRLIPKEQESDLKAFYWVEIQQAIGSTDTSQFVEQLQTI 435
Query: 285 STFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIW 344
T SL + IP AS + + + + WY+ + IW
Sbjct: 436 KTQASLV----EGIPNW-KASEL-----AEYIAYRHQSTLAWNTQIEQWYRYEGKEKGIW 485
Query: 345 SLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKS 404
S ++ E++ ++ + +KN P F N +N+ + S
Sbjct: 486 SKDDKYYIWQLIQ------EELKAIALIHQQRDKNGNKPGFSHNLVASIENLLKGS---- 535
Query: 405 TAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGE 464
+ DS L ++G+L+L+T + + + +T +
Sbjct: 536 ------------LPVRQWDSIEGLLPLKNGVLNLKTQEFHQHDPKYCLTYCLPYEYNPLA 583
Query: 465 PSQEFLDLVSGYFESEE-VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKY 523
LD ++ + ++++F + + G + Q ++ + G GG+GK TL L
Sbjct: 584 TCHPILDWLNQMTGGDRIMVEFFRAHLAAIVRGRSDIQSYLELLGPGGTGKGTLTRLATA 643
Query: 524 AFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTG 583
G+Q ++ ++ +NR R+ G+++V+I++ + + +K +TG
Sbjct: 644 LVGDQNTVSTTLKNLEENR--------FDTARIFGAKLVVITDAEKFGG-EVSVLKALTG 694
Query: 584 GDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA-NRDAS 642
D + Y A I N+ + RR I + +
Sbjct: 695 EDKLRFEQKYKQPLDGFYAQSRVIICANEAPQSSDYTSGLARRRQTTYLTNKIPIEKQRN 754
Query: 643 F-------AQKLETKYTLEAKKWFL----KGVKAYISKGLDVDIPEVCLKAKEEERQGTD 691
+Y W L + ++ I + + P + K + T+
Sbjct: 755 LISINGKGVTGEFAQYLPGLLNWVLAMPPEELERAIRE-IPTTHPSF-TQHKAQVLCETN 812
Query: 692 TYQAWIDDCCDIGENLWE-----------ESHSLAK-----SYSEYREQELNYDRKRIST 735
W+D E S +L + Y+ Y E + + +S
Sbjct: 813 PIADWLDQAVVYREGWRTNVGMAKRDKDSSSPNLFQCVNQWLYANYAEFCQSSGARPVSL 872
Query: 736 RTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFE 776
R L+ K ++ + +GLKL+ +
Sbjct: 873 RRFVNLLRDLAVNQLGLMVKKGRD-RLGAFFEGLKLRSEMD 912
>gi|227487378|ref|ZP_03917694.1| phage/plasmid primase P4 family protein [Corynebacterium
glucuronolyticum ATCC 51867]
gi|227092602|gb|EEI27914.1| phage/plasmid primase P4 family protein [Corynebacterium
glucuronolyticum ATCC 51867]
Length = 497
Score = 183 bits (463), Expect = 2e-43, Method: Composition-based stats.
Identities = 73/481 (15%), Positives = 151/481 (31%), Gaps = 38/481 (7%)
Query: 307 FSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDV 366
F+ A + +FS+ +Y K W+ D D + L +
Sbjct: 37 FAQAMKERLFSLDGLDTLVYL--GKVWHVWDGRKFARVPTDDDLRQVYLYKKLETAY--- 91
Query: 367 FDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLD--S 424
+ P+ N+ ++ + ++ L+ ++ + D
Sbjct: 92 --YEKTPDRNSNEVVKTEVNPDSAMLARVIDPLKGLVMRRDGLDERHMWIQDTGRGDLPK 149
Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEV-M 483
+ +GILD T + T L T + + + V G + ++
Sbjct: 150 GGLLIPMANGILDANTRKMYDHTPNLVATWVLPFDYDKEAACPHWKKFVGGILDEDKTGQ 209
Query: 484 DYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP 543
+ +G + G +A + + + G SGK + ++I+ G + + +
Sbjct: 210 TFLQEWIGYLISGQTRAHKAVLVTGAPRSGKGVMASVIRALMGEENTAATTLTSL----- 264
Query: 544 PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMT--GGDCMTARLNYGNTYSESP 601
L L G IS++ +++ A + ++ D M G
Sbjct: 265 ----GGRFGLANLEGKNYAFISDSRDSNMNAQATERLLSIIANDVMAVEPK-GKDIVTRR 319
Query: 602 ASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK-PIANRDASFAQKLETKYTLEAKKWFL 660
+ I N + +A R+I + + D ++L + W L
Sbjct: 320 LNVRLMIFSNNVPRFPDSGNAIGTRFICLDLPHSHVGKEDQGLTERLLGEL-PGILNWAL 378
Query: 661 KGVKAYISKGLDV-DIP---EVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAK 716
G+ + G +P L+ E+ ++ + N +
Sbjct: 379 DGLDRLRANGWKFTTLPGTHAGILETVNEQAS---PLTPYVRERLQFDPNAITALKEVYN 435
Query: 717 SYSEYREQELNYDRKRISTR-TVTLNLKQKGFIG--GIKREKIEKEWKSKRIIKGLKLKP 773
Y E+ E+ ++ST+ T LK G + R K+ K ++G KL P
Sbjct: 436 DYKEWCEE----GNYKVSTKGTFKERLKALRLDGVKVLSRTKVPSYDKLVDAVRGAKLNP 491
Query: 774 A 774
Sbjct: 492 R 492
>gi|257793137|ref|YP_003186534.1| phage/plasmid primase, P4 family [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
gi|257479829|gb|ACV60145.1| phage/plasmid primase, P4 family [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
Length = 1061
Score = 182 bits (462), Expect = 2e-43, Method: Composition-based stats.
Identities = 96/560 (17%), Positives = 195/560 (34%), Gaps = 63/560 (11%)
Query: 260 YDEENFNYKW-DTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSI 318
+EE W D +E D + T + + + + L A+ S
Sbjct: 459 DNEEEAEEAWKDGLLSDEQVDPNEAFETADATSTYIEGELEEVLRERDERVLATGAVPSD 518
Query: 319 YKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKED------------- 365
Y + + W + + +K ++F+ ++ ED
Sbjct: 519 YWRQQGMRFDIAADWMRNSGFRAVEYDEEKEKYKLVHIDFVRALYEDFPSYYFYSGINLY 578
Query: 366 ---VFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSIT---- 418
+D + K + + N+ LEA + ++
Sbjct: 579 NGKYYDFKKSDAAFIKRFMAHALMTEHKHWVTPTMLNNLFTLYKTWLEADEVRNVEDAKV 638
Query: 419 SDLLDSSSRFLGEQDGILD---LETGQKVKPTKELYITKSTGTPFVEGEPSQE------- 468
S D+ Q+GILD L+ + + +T ++
Sbjct: 639 SSFFDTDP-LFPVQNGILDVSSLKRPVMRDFSPDYLVTWQIDAAWLREWEMPRRGHWTLA 697
Query: 469 -------FLDLVSGYFESEEVMDYFTRCVGMALLG-GNKAQRFIHIRGVGGSGKSTLMNL 520
DL + SEE +G +L QR+ + G G +GK TL+ L
Sbjct: 698 MEQAEKDVSDLFREFDLSEETTTALFEAIGYSLAKFDVDEQRYFVLLGPGYNGKGTLLRL 757
Query: 521 IKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQ 580
++ FG +V ++++NR + RL + I I+++ + + IK+
Sbjct: 758 LESLFGK-FVETVTLQELVENRFAAS--------RLARASINIVADASNQTLKDTETIKK 808
Query: 581 MTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD 640
+TG D +TA + Y + + P ++ N + ++RR ++ PF + + +
Sbjct: 809 LTGNDLLTAEMKYRDAFPFRPR-IKLWMASNHLPPTPDGSFGFFRRPLIFPFHRQLPMKP 867
Query: 641 ASFAQKLETKYTLE-AKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID- 698
A + ++L T +K ++G + + L+ + + D QA I
Sbjct: 868 ADWERRLRTPEAKSYLLYLAIKHYLNMRAEGRKLTESKEMLRTRMDYWAANDIVQAAIQY 927
Query: 699 ------DCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG-FIGGI 751
D + + +LA E +EL RK++ST T+ L +G +
Sbjct: 928 GIFEFPDSQNKDRKDYVVPRALATKAIELFAEEL--GRKKVSTNTLLERL--RGNYADIK 983
Query: 752 KREKIEKEWKSKRIIKGLKL 771
+ ++ K + + +G++L
Sbjct: 984 EVFATCEDGKRRHVWEGVRL 1003
>gi|256818700|ref|YP_003135767.1| phage/plasmid primase, P4 family [Cyanothece sp. PCC 8802]
gi|256592440|gb|ACV03310.1| phage/plasmid primase, P4 family [Cyanothece sp. PCC 8802]
Length = 1172
Score = 182 bits (461), Expect = 2e-43, Method: Composition-based stats.
Identities = 88/573 (15%), Positives = 185/573 (32%), Gaps = 71/573 (12%)
Query: 239 ETRGSSKGKEI------ARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFY 292
T G+ I A WS+ E + + + IG T + L
Sbjct: 376 ATHGTDSDAAIKKVLEEAIAWSRLIPKEQESDLKAFYWVEIQQAIGSTDTSQF-VEQLQT 434
Query: 293 HHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKIT 352
+ P + + + + + + + WY+ + IWS
Sbjct: 435 IKTQASPVEGIPNWKASEL-AEYIAYRHQSTLAWNTQIEQWYRYEGKEKGIWSKDDKYYI 493
Query: 353 ASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAG 412
++ E++ ++ + +KN P F N +N+ + S
Sbjct: 494 WQLIQ------EELKAIALIHQQRDKNGNKPGFSHNLVASIENLLKGS------------ 535
Query: 413 SIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDL 472
+ DS L ++G+L+L+T + + + +T + LD
Sbjct: 536 ----LPVRQWDSIEGLLPLKNGVLNLKTQEFHQHDPKYCLTYCLPYEYNPLATCHPILDW 591
Query: 473 VSGYFESEE-VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVI 531
++ + ++++F + + G + Q ++ + G GG+GK TL L G+Q +
Sbjct: 592 LNQMTGGDRIMVEFFRAHLAAIVRGRSDIQSYLELLGPGGTGKGTLTRLATALVGDQNTV 651
Query: 532 NAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARL 591
+ ++ +NR R+ G+++V+I++ + + +K +TG D +
Sbjct: 652 STTLKNLEENR--------FDTARIFGAKLVVITDAEKFGG-EVSVLKALTGEDKLRFEQ 702
Query: 592 NYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA-NRDASF------- 643
Y A I N+ + RR I + +
Sbjct: 703 KYKQPLDGFYAQSRVIICANEAPQSSDYTSGLARRRQTTYLTNKIPIEKQRNLISINGKG 762
Query: 644 AQKLETKYTLEAKKWFL----KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD 699
+Y W L + ++ I + + P + K + T+ W+D
Sbjct: 763 VTGEFAQYLPGLLNWVLAMPPEELERAIRE-IPTTHPSF-TQHKAQVLCETNPIADWLDQ 820
Query: 700 CCDIGENLWE-----------ESHSLAK-----SYSEYREQELNYDRKRISTRTVTLNLK 743
E S +L + Y+ Y E + + +S R L+
Sbjct: 821 AVVYREGWRTNVGMAKRDKDSSSPNLFQCVNQWLYANYAEFCQSSGARPVSLRRFVNLLR 880
Query: 744 QKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFE 776
K ++ + +GLKL+ +
Sbjct: 881 DLAVNQLGLMVKKGRD-RLGAFFEGLKLRSEMD 912
>gi|116326764|ref|YP_803301.1| hypothetical protein TNAV2c_gp078 [Trichoplusia ni ascovirus 2c]
gi|102231772|gb|ABF70595.1| hypothetical protein [Trichoplusia ni ascovirus 2c]
Length = 1046
Score = 181 bits (460), Expect = 3e-43, Method: Composition-based stats.
Identities = 88/431 (20%), Positives = 172/431 (39%), Gaps = 41/431 (9%)
Query: 303 LASRFSDAYNKAMFSIYKKGHFLYTADTKAW-YKKDKNNVYIWSLTL--DKITASIMNFL 359
+A+ F A+ K + + ++ + W Y ++++ +LT+ +K + +
Sbjct: 543 IANVFLKAWKKKIMYL---DDVMFKFNGTLWKYAQEEDAFLRRALTVWVEKFKRIADDHV 599
Query: 360 VSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR-----------QNVEENSK-----AK 403
+K+ + + ++ S++ R +NS K
Sbjct: 600 QELKQVEVNEAMAIVNDGGGSRNRTLPKKQPVTRAEYLQKVIDSIWRKCKNSNTQSGIVK 659
Query: 404 STAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKST---GTPF 460
+ G+ +D++ +D + ET E +++ P+
Sbjct: 660 AIKTICTTGAGHDEMV-QMDNNENLTAFEDMVFCNETLTMRNGRPEDMLSRCLKCKYIPY 718
Query: 461 VEGEP-SQEFLD-LVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLM 518
+ EP + EF++ S F +E+ +YF G N +++ GVG +GKS +
Sbjct: 719 EQLEPEAIEFVNIFYSSLFPDKEICEYFQLSCSQIFGGRNVFKQYQVWTGVGNNGKSMCI 778
Query: 519 NLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKI 578
L + G + + ++ + G ANP + RL G R+V+ E ++DE+N +
Sbjct: 779 KLFETMLGRLF--SKLNKSVLTSLKHNIGAANPDMYRLRGVRMVVTDELAKSDELNVGQT 836
Query: 579 KQMTGGDCMTARLNYGNTYSESP--ASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI 636
K ++GGD AR Y + + A F P IV N +R+PD+A WRR VIPF+
Sbjct: 837 KLLSGGDSFIARDLYQKSTQMATIKAQFIPIIVCNDLPLLRDPDEAAWRRERVIPFESYF 896
Query: 637 ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEE--RQGTDTYQ 694
A ++ +L + E K ++ I ++ +P ++ +
Sbjct: 897 A-----YSNEL--EIPEEIPKERIQMRDDNIMVKINKYMPAFASCLLKKYIDFEKLRRSS 949
Query: 695 AWIDDCCDIGE 705
+ DDCC+
Sbjct: 950 PYNDDCCEKIP 960
>gi|323968126|gb|EGB63536.1| phage/plasmid primase [Escherichia coli M863]
Length = 584
Score = 181 bits (459), Expect = 4e-43, Method: Composition-based stats.
Identities = 67/387 (17%), Positives = 136/387 (35%), Gaps = 64/387 (16%)
Query: 389 TDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTK 448
+++R + A + A + + D L +G LDL+TG+ T
Sbjct: 197 SEHRATFSKRVINNAVEALKVIAEPMGEPSGD-------LLPFANGALDLKTGEFSPHTP 249
Query: 449 ELYITKSTGTPFVEGEPSQEFLDLVSGYFE------SEEVMDYFTRCVGMALLGGNK--A 500
E +IT G + P + D + + ++ C + ++ N+
Sbjct: 250 ENWITTHNGIEYTPPAPGENIRDNAPNFHKWLEHVAGKDPRKMMRICAALYMIMANRYDW 309
Query: 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSR 560
Q FI G GGSGKST ++ G Q ++AE + + +++GSR
Sbjct: 310 QMFIEATGDGGSGKSTFTHIASLLAGKQNTVSAEMTSLDDAGGR---------AQVVGSR 360
Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV-RNP 619
++++++ + IK++TGGD + Y ++ + + N + +
Sbjct: 361 LIVLADQPKYTG-EGTGIKKITGGDPVEINPKYEKRFTAVIRA--VVLATNNNPMIFTER 417
Query: 620 DDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPE 677
RR I+ FD + A +D +K+ + + ++ + PE
Sbjct: 418 AGGVSRRRIIFRFDNIVSEAEKDRELPEKIAAEIPVIIRRLLA-----------NFTDPE 466
Query: 678 VCLKAKEEERQG---------TDTY------QAWIDDC--CDIGENL----WEESHSLAK 716
E+R G TD ++++ +G + +SL +
Sbjct: 467 KARALLLEQRDGDEALAIKQQTDPVIEFCQFLNFLEEARGLMMGGGGDSVKYTTRNSLYR 526
Query: 717 SYSEYREQELNYDRKRISTRTVTLNLK 743
Y + K ++ +K
Sbjct: 527 VYLAFMAYAGRS--KPLNVNDFGKAMK 551
>gi|227830424|ref|YP_002832204.1| P4 family phage/plasmid primase [Sulfolobus islandicus L.S.2.15]
gi|227456872|gb|ACP35559.1| phage/plasmid primase, P4 family [Sulfolobus islandicus L.S.2.15]
Length = 885
Score = 181 bits (459), Expect = 4e-43, Method: Composition-based stats.
Identities = 133/850 (15%), Positives = 274/850 (32%), Gaps = 115/850 (13%)
Query: 1 MPVMQWKEQAKQAIHNGFKLIPLRLGDKRP--QRLGKWEEQLLSSEKIDKLPA---CGFG 55
M +QW AK I +GF + P+ K+P + K+ L+ E+ + G+
Sbjct: 1 MDKLQW---AKWFIDHGFAIFPIDAETKKPVIKEWQKYSTTPLTDEEKKQYLEMIEKGYN 57
Query: 56 FVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKK 115
+ G+Q L D + K+ A +D L + + P + + + I
Sbjct: 58 YAVPGGQQNLVILDFEDKELLKAWISEDELNKLCKSTLCV--DTPHGGLHVYVTADEIPD 115
Query: 116 KKT----TESTQGHLDILGCGQYFVAYN--IHPK----TKKEYTWTTPPHRFKVEDTPLL 165
K + +G D+ Y VA I+ K K + + + +
Sbjct: 116 HKFNPMFEKDGKGVADLQSFNSYVVAPGSCINHKFCTSDKCPWKGQDYVTCYIPNNNINI 175
Query: 166 SEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGE-EFYNG 224
++ED++ L KF + + + S + + + T +I + + Y G
Sbjct: 176 NKEDLKELLKFLADKGKKIGIELSSSARAWLYEKEKEEESTPEDIKKLQEEMAKYDRYKG 235
Query: 225 SHDEWIP--VVMAVHHETRGSSKGKEIARRWSK---QGSTYDE---ENFNYKW------- 269
+ I V + S K K+I + + Y + + W
Sbjct: 236 KTIDAIRSDVCKKLKENVEPSKKTKQIFKTVYGVVCEKKNYSDLGLDRSRGDWHVITILL 295
Query: 270 ----------DTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIY 319
F + A K + + K L + K +
Sbjct: 296 SLGVTNVETLKRFLPNDSKVFAPKWGKYFAHTLKKAWKFAKHALEFQVQINGKKETEAKK 355
Query: 320 KKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKN 379
+ A + + + + A I F K+ V+ P D
Sbjct: 356 IAKTIITDAILERF------KIKTFRQVTGHNQAIIGVFTWDKKKGVYV----PFDKEIR 405
Query: 380 SKSPRFWFNTDYRRQNVEENSK--AKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILD 437
R + R ++ + ++ + + ++T L + +G L+
Sbjct: 406 KAIRRTAELLEIRSRDKKTLARLSKRDVDDIFDEIKDLTLTP--LPKEPLRIAFTNGTLE 463
Query: 438 -LETGQKVKPTKELYITKSTGTPFVEGEP-------------------------SQEFLD 471
+TG + K ++ E + L+
Sbjct: 464 WTDTGLMW-HDAKERSPKIYAFYYLPWEVKIEEIEKFQGKEITVQDIEQLARGLCPKSLE 522
Query: 472 LVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVI 531
+ + + V + +G L K ++ + G G +GKST +NL+K G +Y I
Sbjct: 523 AFKSWVDDKWVTLF--EIIGYTLYPEIKFRKAFMLVGEGKNGKSTFINLVKKILG-EYAI 579
Query: 532 NAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARL 591
+ ++ ++ + L ++E+ + + + K++TGGD TA +
Sbjct: 580 SISPRELFDSQN------RFIVSNLYHKLANAVAESKDYSIDDMDRFKRLTGGDWFTADV 633
Query: 592 NYGNTYSESPASFTPFIVPNKHLFVRNP-DDAWWRRYIVIPFDKPIANRDASFAQKLETK 650
+ + + + + N ++R+ D A+W R+I+I F + D F +
Sbjct: 634 KFKDPITFKNIA-KLIVASNNMPYIRDTNDKAFWHRWIIIEFPHQFPDDDTWFDKTFTED 692
Query: 651 YTLEAKK-WFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIG----- 704
L + K D + E + + TD+ A+I + G
Sbjct: 693 EINGIVTVSLLAFARTVQRKHFDFEQTE--REVMDIWLSRTDSVYAFISEYTKRGIITLD 750
Query: 705 ---ENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWK 761
+LW + L + Y +Y ++ K + + +++ GI + K
Sbjct: 751 PKNADLWVKRVELYRLYKDYC---IDQGFKGVGGKAFARRVRE---YFGIMTVLKNVDGK 804
Query: 762 SKRIIKGLKL 771
R G+ +
Sbjct: 805 RVRAFVGITI 814
>gi|31983840|ref|NP_858448.1| RepA protein [Sulfolobus islandicus]
gi|11137542|emb|CAC15841.1| RepA protein [Sulfolobus islandicus]
Length = 896
Score = 181 bits (458), Expect = 6e-43, Method: Composition-based stats.
Identities = 132/857 (15%), Positives = 254/857 (29%), Gaps = 124/857 (14%)
Query: 8 EQAKQAIHNGFKLIPLRLGDKRPQRLGK--WEEQLLSSEKIDKLPA---CGFGFVCGVGE 62
AK + +GF + P+ K+P + Q L+ E+ K G+ + G+
Sbjct: 37 NYAKMFVEHGFAIFPIDPETKKPVSKEWQKYSHQPLTEEEKQKFLEMISQGYNYAVPGGQ 96
Query: 63 QPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTT--- 119
+ L D + K+ + L + + P I + + + + K
Sbjct: 97 KNLVILDFEDKELLKNWITGTALDNLCKEKTFCV-ETPHGGIHIYLQADKVPEHKFNPLF 155
Query: 120 -ESTQGHLDILGCGQYFVAYNI-----HPKT------KKEYTWTTPPHRFKVEDTPLLSE 167
+ +G D+ Y V H + K Y P + + + E
Sbjct: 156 IKDGKGIADLQSFNSYVVGPGSCINHKHCDSNKCNWRGKNYIGFYIPIKDR-----QIGE 210
Query: 168 EDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAF------------LS 215
++ ++ + + L + + + ++ T +E +
Sbjct: 211 IKLKDFLRWLADKSKSLGIELANNARAWLEGKKEEKEDTAKEFEELRKELIKYDSGKSIE 270
Query: 216 CFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDF- 274
EE N + I H G S + R W +
Sbjct: 271 RIKEEICNKKPPKLIK-----HIICEGKSYAEAGIDR------------SRGDWRVILYL 313
Query: 275 --EEIGDTAK--KRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADT 330
+ D+ K + S + K K A S A+N + K T
Sbjct: 314 MRHGVTDSGKILQLLPSDSKAKDNEKWDAKKYFAVTLSKAWNIVKKYLEAKKKAKEDKST 373
Query: 331 KAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFD-LSEEPEDNNKNSKSP-----R 384
+ I ++ + + I++ + + + K P
Sbjct: 374 AK-------ALIIEAIADEIMHEHILSTFIQTDNLKESKIGLFRFNKKKGIFEPFDERIE 426
Query: 385 FWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILD-LETGQK 443
N K+ I T L + ++G L+ + G
Sbjct: 427 KIINKKLEEYKEFPLGSDKTRVVRNIKEEIMRRTQRQLLLEPLRIAFKNGTLEWTDKGII 486
Query: 444 VKPTKE--------LYITKSTGTPFVEG----------------EPSQEFLDLVSGYFES 479
+KE YI + +E + L+ + +
Sbjct: 487 WYDSKERTYKQYAFHYIDWNLRIEEIEKFNEREITVQDIEDLARRVCPKALETFKQWVDD 546
Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539
+ ++ Y +G L + I + G G +GKST +NL+ G V IM
Sbjct: 547 QWILLY--EIIGYTLYPKYIFNKAILLVGNGSNGKSTFLNLLLKILGKNNVTAVSLKRIM 604
Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599
+ + I L I SE N K++TG D + + +
Sbjct: 605 EGD-------RFAPIELYHKLANINSELFTFKVTNTDLFKKLTGEDYIIGEKKFRDPMYF 657
Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWF 659
+ N+ V++ +WRR+IVI F F + +
Sbjct: 658 INYA-KLINATNELPEVKDQSYGFWRRWIVIEFPHQFPPDPNFFDKTFKESEIEGIITVS 716
Query: 660 LKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE--------NLWEES 711
+ + + D + KE + +D+ A++ D + E +L+
Sbjct: 717 VLAFSRVLQQ-KKFDFEDSSADIKELWERKSDSVYAFVKDLIENNEVEYDPRNGDLFTPV 775
Query: 712 HSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771
L ++Y+E+ + DRK + T T L+ + I ++ E+ W G++L
Sbjct: 776 KELYQAYAEWCNEN---DRKPEAQSTFTKRLESRFRIIKSQKRIGERVW----CYVGIRL 828
Query: 772 KPAFESVDDNSNIIDFK 788
K S N D
Sbjct: 829 KNNNISTGSNEKPGDSN 845
>gi|218700360|ref|YP_002407989.1| nucleic acid independent nucleoside triphosphatase; phage DNA
primase [Escherichia coli IAI39]
gi|218370346|emb|CAR18149.1| nucleic acid independent nucleoside triphosphatase; phage DNA
primase [Escherichia coli IAI39]
Length = 582
Score = 180 bits (456), Expect = 8e-43, Method: Composition-based stats.
Identities = 66/387 (17%), Positives = 137/387 (35%), Gaps = 64/387 (16%)
Query: 389 TDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTK 448
+++R + A + A + + D L +G LDL+TG+ T
Sbjct: 195 SEHRATFSKRVINNAVEALKVIAEPMGEPSGD-------LLPFANGALDLKTGEFSPHTP 247
Query: 449 ELYITKSTGTPFVEGEPSQEFLDLVSGYFE------SEEVMDYFTRCVGMALLGGNK--A 500
E +IT + G + P + D + + ++ C + ++ N+
Sbjct: 248 ENWITTNNGIEYTPPAPGENIRDNAPNFHKWLEHAAGKDSRKMMRICAALYMIMANRYDW 307
Query: 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSR 560
Q FI G GGSGKST ++ G Q ++AE + + +++GSR
Sbjct: 308 QMFIEATGDGGSGKSTFTHIASLLAGKQNTVSAEMTSLDDAGGR---------AQVVGSR 358
Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV-RNP 619
++++++ + IK++TGGD + Y ++ + + N + +
Sbjct: 359 LIVLADQPKYTG-EGTGIKKITGGDPVEINPKYEKRFTTVIRA--VVLATNNNPMIFTER 415
Query: 620 DDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPE 677
RR ++ FD + A +D +K+ + + ++ + PE
Sbjct: 416 AGGVSRRRVIFRFDNIVSEAEKDRELPEKIAAEIPVIIRRLLA-----------NFTDPE 464
Query: 678 VCLKAKEEERQG---------TDTY------QAWIDDC--CDIGENL----WEESHSLAK 716
E+R G TD ++++ +G + +SL +
Sbjct: 465 KARALLLEQRDGDEALAIKQQTDPVIEFCQFLNFLEEARGLMMGGGGDSVKYTTRNSLYR 524
Query: 717 SYSEYREQELNYDRKRISTRTVTLNLK 743
Y + K ++ +K
Sbjct: 525 VYLAFMAYAGRS--KPLNVNDFGKAMK 549
>gi|115298601|ref|YP_762453.1| 94.9 kDa DNA primase/Poxvirus D5 family [Spodoptera frugiperda
ascovirus 1a]
gi|114416868|emb|CAL44699.1| 94.9 kDa DNA primase/Poxvirus D5 family [Spodoptera frugiperda
ascovirus 1a]
Length = 826
Score = 180 bits (456), Expect = 9e-43, Method: Composition-based stats.
Identities = 70/338 (20%), Positives = 135/338 (39%), Gaps = 19/338 (5%)
Query: 323 HFLYTADTKAWYKKDKNNVYIWSLTL---DKITASIMNFLVSMKEDVFDLSEEPEDNNKN 379
+Y + W + I DK +++ + + +D +++
Sbjct: 343 RVMYQFNGNIWRPVRNDEALIRRELPLWFDKFNEYATDYVARLVASGRGDEIQDDDGDES 402
Query: 380 SKS------PRFWFNTDYRR-QNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQ 432
+ + R F + +R+ +N S + ++L + S +D + + +
Sbjct: 403 NAANNLLNATRRKFKSIHRKCKNSAPQSGVITQVRALNTHDAGAYKSTKMDDNDSIVAFK 462
Query: 433 DGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE-----FLDLVSGYFESEEVMDYFT 487
+ + +T + E I++ +V E + D + F EV +YF
Sbjct: 463 NVVFCRDTLTVRRGKPEDMISRCLNCDYVPYEELADDVKKFVNDFLDSLFPDPEVREYFL 522
Query: 488 RCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAG 547
V G N ++++ GVG +GKS L+ + + G ++ S ++ N+ + G
Sbjct: 523 LSVCQIFRGFNIFKQYVVWTGVGNNGKSVLIRMFECLLG-PLMVKLSKSVLVCNKM-DIG 580
Query: 548 KANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESP--ASFT 605
NP + +L G R+ + E + +IN + K ++G AR Y + P A F
Sbjct: 581 SVNPDMCKLQGVRLAVTDEIAGSADINVGQAKLLSGNGTFMARDLYMKSSEMEPIRAQFI 640
Query: 606 PFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASF 643
P IV N +R PD+A W+R ++PFD N F
Sbjct: 641 PIIVCNALPSLREPDEAAWKRIHIVPFDSYFTNEPDGF 678
>gi|218290889|ref|ZP_03494953.1| phage/plasmid primase, P4 family [Alicyclobacillus acidocaldarius
LAA1]
gi|218239156|gb|EED06358.1| phage/plasmid primase, P4 family [Alicyclobacillus acidocaldarius
LAA1]
Length = 1061
Score = 179 bits (455), Expect = 1e-42, Method: Composition-based stats.
Identities = 86/486 (17%), Positives = 178/486 (36%), Gaps = 62/486 (12%)
Query: 333 WYKKDKNNVYIWSLTLDKITASIMNFLVSMKED----------------VFDLSEEPEDN 376
W + + +K ++F+ ++ ED +D +
Sbjct: 533 WMRNSGARAVEYDEEKEKYKLVHIDFVRALYEDFPSYYFYSGINLYNGKYYDFKKSDAAF 592
Query: 377 NKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSIT----SDLLDSSSRFLGEQ 432
K + + N+ LEA + ++ S + D+ Q
Sbjct: 593 IKRFMAHALMTEHKHWVTPTMLNNLFTLYKTWLEADEVRNVEDAKVSSVFDTDP-LFPVQ 651
Query: 433 DGILD---LETGQKVKPTKELYITKSTGTPF--------------VEGEPSQEFLDLVSG 475
+GILD L+ + + +T + + ++ DL
Sbjct: 652 NGILDVSSLKHPVMREFSPNYLVTWQIDAAWLREWEMSRRGHWTLAMEQAEKDMSDLFRE 711
Query: 476 YFESEEVMDYFTRCVGMALLG-GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
+ SEE +G +L QR+ + G G +GK TL+ L++ FG +V
Sbjct: 712 FDLSEETTTALFEAIGYSLAKFDVDEQRYFVLLGPGYNGKGTLLRLLESIFGK-FVETVT 770
Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
++++NR + RL + I I+++ + + IK++TG D +TA + Y
Sbjct: 771 LQELVENRFAAS--------RLARASINIVADASNQTLKDTETIKKLTGNDLLTAEMKYR 822
Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLE 654
+ + P ++ N + ++RR ++ PF + + + A + ++L T
Sbjct: 823 DAFPFRPR-IKLWMASNHLPPTPDGSFGFFRRPLIFPFHRQLPMKPADWEKRLRTPEAKS 881
Query: 655 -AKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID-------DCCDIGEN 706
+K ++G + + L+A+ + D QA I D +
Sbjct: 882 YLLYLAVKHYLNMRAEGRKLTESKEMLRARMDYWAANDIVQAAIQYGIFEFPDSQNKDRK 941
Query: 707 LWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG-FIGGIKREKIEKEWKSKRI 765
+ +LA E +EL RK++ST T+ L +G + + ++ K + +
Sbjct: 942 DYVVPRALATKAIELFAEEL--GRKKVSTNTLLERL--RGNYADIKEVFATCEDGKRRHV 997
Query: 766 IKGLKL 771
+G++L
Sbjct: 998 WEGVRL 1003
>gi|315291925|gb|EFU51277.1| phage/plasmid primase, P4 family protein [Escherichia coli MS
153-1]
Length = 584
Score = 179 bits (455), Expect = 1e-42, Method: Composition-based stats.
Identities = 66/387 (17%), Positives = 136/387 (35%), Gaps = 64/387 (16%)
Query: 389 TDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTK 448
+++R + A + A + + D L +G LDL+TG+ T
Sbjct: 197 SEHRATFSKRVINNAVEALKVIAEPMGEPSGD-------LLPFANGALDLKTGEFSPHTP 249
Query: 449 ELYITKSTGTPFVEGEPSQEFLDLVSGYFE------SEEVMDYFTRCVGMALLGGNK--A 500
E +IT G + P + D + + ++ C + ++ N+
Sbjct: 250 ENWITTHNGIEYTPPAPGENIRDNAPNFHKWLEHAAGKDPRKMMRICAALYMIMANRYDW 309
Query: 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSR 560
Q FI G GGSGKST ++ G Q ++AE + + +++GSR
Sbjct: 310 QMFIEATGDGGSGKSTFTHIASLLAGKQNTVSAEMTSLDDAGGR---------AQVVGSR 360
Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV-RNP 619
++++++ + IK++TGGD + Y ++ + + N + +
Sbjct: 361 LIVLADQPKYTG-EGTGIKKITGGDPVEINPKYEKRFTAVIRA--VVLATNNNPMIFTER 417
Query: 620 DDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPE 677
RR ++ FD + A +D +K+ + + ++ + PE
Sbjct: 418 AGGVARRRVIFRFDNIVSEAEKDRELPEKIAAEIPVIIRRLLA-----------NFTDPE 466
Query: 678 VCLKAKEEERQG---------TDTY------QAWIDDC--CDIGENL----WEESHSLAK 716
E+R G TD ++++ +G + +SL +
Sbjct: 467 KARALLLEQRDGDEALAIKQQTDPVIEFCQFLNFLEEARGLMMGGGGDSVKYTTRNSLYR 526
Query: 717 SYSEYREQELNYDRKRISTRTVTLNLK 743
Y + K ++ +K
Sbjct: 527 VYLAFMAYAGRS--KPLNVNDFGKAMK 551
>gi|194434203|ref|ZP_03066470.1| bacteriophage P4 DNA primase [Shigella dysenteriae 1012]
gi|194417532|gb|EDX33634.1| bacteriophage P4 DNA primase [Shigella dysenteriae 1012]
gi|332096153|gb|EGJ01156.1| putative bacteriophage P4 DNA primase [Shigella dysenteriae 155-74]
Length = 582
Score = 179 bits (454), Expect = 1e-42, Method: Composition-based stats.
Identities = 89/561 (15%), Positives = 179/561 (31%), Gaps = 90/561 (16%)
Query: 239 ETRGSSKGKEIARRWSKQGSTYDEENFNYKW---------DTFDFEEIGDTAKKRSTFTS 289
GS A++W +Q +N W D G +
Sbjct: 23 IFAGSD-AWSHAKQWQEQDGPASGDNVPPVWLGPNQLAELDALKIVPDGKKRVRLYQAGE 81
Query: 290 LFYHHGKLIPKGLLASRFSDA--YNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLT 347
L K I + L A+ DA Y + M + Y + + + +
Sbjct: 82 LDLVETKKIGQKLAAADIQDANFYPEGMHVQKCENWRRYLNAER---ENIAAGLTMPEQK 138
Query: 348 LDKITASIMNFLVSMKEDVFD-LSEEPEDN------------NKNSKSPRFWFNTDYRRQ 394
++ + + + FD + PE + R +
Sbjct: 139 NTQLAQMADSERAQLLAERFDGVCVHPESEIVHVWRGGVWCPVSTMELSREMVAIYSEHR 198
Query: 395 NVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITK 454
+ ++L+ I + + S L +G LDL+TG+ T E +IT
Sbjct: 199 ATFSKRVINNAVEALKV-----IAEPMGEPSGDLLPFANGALDLKTGEFSPHTPENWITT 253
Query: 455 STGTPFVEGEPSQEFLDLVSGYFE------SEEVMDYFTRCVGMALLGGNK--AQRFIHI 506
G + P + D + + ++ C + ++ N+ Q FI
Sbjct: 254 HNGIEYTPPAPGENIRDNAPNFHKWLKHAAGKDPRKMMRICAALYMIMANRYDWQMFIEA 313
Query: 507 RGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISE 566
G GGSGKST ++ G Q ++AE + + +++GSR++++++
Sbjct: 314 TGDGGSGKSTFTHIASLLAGKQNTVSAEMTSLDDAGGR---------AQVVGSRLIVLAD 364
Query: 567 TNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV-RNPDDAWWR 625
+ IK++TGGD + Y ++ + + N + + R
Sbjct: 365 QPKYTG-EGTGIKKITGGDPVEINPKYEKRFTAVIRA--VVLATNNNPMIFTERAGGVAR 421
Query: 626 RYIVIPFDKPI--ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAK 683
R ++ FD + A +D +K+ + + ++ + PE
Sbjct: 422 RRVIFRFDNIVSEAEKDRELPEKIAAEIPVIIRRLLA-----------NFTDPEKARALL 470
Query: 684 EEERQG---------TDTY------QAWIDDC--CDIGENL----WEESHSLAKSYSEYR 722
E+R G TD ++++ +G + +SL + Y +
Sbjct: 471 LEQRDGDEALAIKQQTDPVIEFCQFLNFLEEARGLMMGGGGDSVKYTTRNSLYRVYLAFM 530
Query: 723 EQELNYDRKRISTRTVTLNLK 743
K ++ +K
Sbjct: 531 AYAGRS--KPLNVNDFGKAMK 549
>gi|240119330|dbj|BAH79195.1| putative DNA primase [Escherichia coli O157:H7]
Length = 584
Score = 179 bits (454), Expect = 2e-42, Method: Composition-based stats.
Identities = 66/387 (17%), Positives = 136/387 (35%), Gaps = 64/387 (16%)
Query: 389 TDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTK 448
+++R + A + A + + D L +G LDL+TG+ T
Sbjct: 197 SEHRATFSKRVINNAVEALKVIAEPMGEPSGD-------LLPFANGALDLKTGEFSPHTP 249
Query: 449 ELYITKSTGTPFVEGEPSQEFLDLVSGYFE------SEEVMDYFTRCVGMALLGGNK--A 500
E +IT G + P + D + + ++ C + ++ N+
Sbjct: 250 ENWITTHNGIEYTPPAPGENIRDNAPNFHKWLEHAAGKDPRKMMRICAALYMIMANRYDW 309
Query: 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSR 560
Q FI G GGSGKST ++ G Q ++AE + + +++GSR
Sbjct: 310 QMFIEATGDGGSGKSTFTHIASLLAGKQNTVSAEMTSLDDAGGR---------AQVVGSR 360
Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV-RNP 619
++++++ + IK++TGGD + Y ++ + + N + +
Sbjct: 361 LIVLADQPKYTG-EGTGIKKITGGDPVEINPKYEKRFTAVIRA--VVLATNNNPMIFTER 417
Query: 620 DDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPE 677
RR ++ FD + A +D +K+ + + ++ + PE
Sbjct: 418 AGGVARRRVIFRFDNIVSEAEKDRELPEKIAAEIPVIIRRLLA-----------NFTDPE 466
Query: 678 VCLKAKEEERQG---------TDTY------QAWIDDC--CDIGENL----WEESHSLAK 716
E+R G TD ++++ +G + +SL +
Sbjct: 467 KARALLLEQRDGDEALAIKQQTDPVIEFCQFLNFLEEARGLMMGGGGDSVKYTTRNSLYR 526
Query: 717 SYSEYREQELNYDRKRISTRTVTLNLK 743
Y + K ++ +K
Sbjct: 527 VYLAFMAYAGRS--KPLNVNDFGKAMK 551
>gi|331682252|ref|ZP_08382871.1| bacteriophage P4 DNA primase [Escherichia coli H299]
gi|331079883|gb|EGI51062.1| bacteriophage P4 DNA primase [Escherichia coli H299]
Length = 583
Score = 179 bits (454), Expect = 2e-42, Method: Composition-based stats.
Identities = 67/410 (16%), Positives = 141/410 (34%), Gaps = 68/410 (16%)
Query: 389 TDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTK 448
+++R + A + A + + D L +G LDL+TG+ T
Sbjct: 196 SEHRATFSKRVINNAVEALKVIAEPMGEPSGD-------LLPFANGALDLKTGEFSPHTP 248
Query: 449 ELYITKSTGTPFVEGEPSQEFLDLVSGYFE------SEEVMDYFTRCVGMALLGGNK--A 500
E +IT G + P + D + + ++ C + ++ N+
Sbjct: 249 ENWITTHNGIEYTPPAPGENIRDNAPNFHKWLEHAAGKDPRKMMRICAALYMIMANRYDW 308
Query: 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSR 560
Q FI G GGSGKST ++ G Q ++AE + + +++GSR
Sbjct: 309 QMFIEATGDGGSGKSTFTHIATLLAGKQNTVSAEMTSLDDAGGR---------AQVVGSR 359
Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV-RNP 619
++++++ + IK++TGGD + Y ++ + + N +
Sbjct: 360 LIVLADQPKYTG-EGTGIKKITGGDPVEINPKYEKRFTTIIRA--VVLATNNDPMIFTER 416
Query: 620 DDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPE 677
RR ++ FD + +D +K+ + + ++ + PE
Sbjct: 417 AGGVSRRRVIFRFDNIVREDEKDKELPEKIAAEIPVIIRRLLA-----------NFADPE 465
Query: 678 VCLKAKEEERQG---------TDTY------QAWIDDC--CDIGENL----WEESHSLAK 716
E+R G TD ++++ +G + +SL +
Sbjct: 466 KARALLLEQRDGDEALAIKQQTDPVVELCAALEFLEEARGLMMGGGGDTVKYTTRNSLYR 525
Query: 717 SYSEYREQELNYDRKRISTRTVTLNLKQK----GFIGGIKREKIEKEWKS 762
Y + K +S ++ G+ ++ K + +
Sbjct: 526 VYMAFMAYTGK--GKCLSVNEFGKAMRSAAKVYGYEYITRKVKGVTQTNA 573
>gi|313895672|ref|ZP_07829228.1| phage/plasmid primase, P4 family, C-terminal domain protein
[Selenomonas sp. oral taxon 137 str. F0430]
gi|312975798|gb|EFR41257.1| phage/plasmid primase, P4 family, C-terminal domain protein
[Selenomonas sp. oral taxon 137 str. F0430]
Length = 759
Score = 179 bits (453), Expect = 2e-42, Method: Composition-based stats.
Identities = 61/370 (16%), Positives = 123/370 (33%), Gaps = 29/370 (7%)
Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGE-PSQEFLDLVSG 475
I L++ + Q+GIL L T + + +L T + + + + F +
Sbjct: 388 IKDSDLNADEDIINFQNGILHLSTMELTEHASDLLSTIQIPCAWSQEDLATPVFDRFMQT 447
Query: 476 YFESE-EVMDYFTRCVGMALLGGNKA--QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532
+ + E+ +G L ++ + + G G +GKS L L++ G +
Sbjct: 448 LTDGDSEIQQLLLEFIGACLSNVKGWRMKKALFMYGAGDTGKSRLKCLVEQLLGRGNYVG 507
Query: 533 AEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLN 592
+ +I + G R+ S+ + K+ TGGD + A
Sbjct: 508 IDLREIEARFGTGL---------IYGMRLAGSSDMSFITVDELKTFKKCTGGDSIFAEFK 558
Query: 593 YGNTYSESPASFTPFIVPNKHLFVRNPDDAWW--RRYIVIPFDK--PIANRDASFAQKLE 648
N + + + + N+ DD W R + + PI +D +KL
Sbjct: 559 GQNGFEFT-FNGLFWFCMNQLPRFGG-DDGQWVHDRIMQVHCKNAIPIDKQDRFLGEKLY 616
Query: 649 TKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGEN-- 706
+ + + ++A I G P+ L A+EE ++ A+ +C
Sbjct: 617 AER-DGIVRKAVHALRAVIQNGYRFTEPQSVLAAREEYMVENNSVLAFHAECMMKRPEGV 675
Query: 707 --LWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKR 764
+ + + Y + LN + + R L + +
Sbjct: 676 KCSEVTTGQVYRIYQTWCR--LNNNGYAKTAREFRTTLAR---YYHTDFSSMTIRRSYGN 730
Query: 765 IIKGLKLKPA 774
+ + L L P
Sbjct: 731 VYRDLLLTPE 740
>gi|319936296|ref|ZP_08010714.1| hypothetical protein HMPREF9488_01547 [Coprobacillus sp. 29_1]
gi|319808672|gb|EFW05216.1| hypothetical protein HMPREF9488_01547 [Coprobacillus sp. 29_1]
Length = 487
Score = 179 bits (453), Expect = 2e-42, Method: Composition-based stats.
Identities = 55/386 (14%), Positives = 122/386 (31%), Gaps = 28/386 (7%)
Query: 351 ITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLE 410
I ++ M D + + + + S+A S + L+
Sbjct: 72 IIEEMIRKYKIMFVDGLGIYIYSGKVWEKKSDNYMLKVIGKQMGKWKIGSRASSVLKQLK 131
Query: 411 AGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFL 470
A + +LL Q+ L+L TG+ + + + + + ++
Sbjct: 132 ADCYEEVQFNLLP----VFNFQNCTLELPTGRTHEHSADDLCSIMMEYDYNPQATYSDWH 187
Query: 471 DLVSGYFESEEVM-DYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529
V + E + G L+ Q+ + G G +GKS +N+I+ F
Sbjct: 188 QFVMDICDDNEERYERLQMMCGYVLMNDCHLQKSFMLYGEGANGKSVFLNIIEQVFNKNN 247
Query: 530 VINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTA 589
V + + LI+L + + I +ET + A K++ G+ ++A
Sbjct: 248 VSYLQLDGLGDK---------FQLIQLTDTLLNISTETKASTNGGEANFKKVVVGETVSA 298
Query: 590 RLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDA-------- 641
+ Y P + N+ + + + + RR + F +
Sbjct: 299 CYKNKDFYKFKPRA-KLIFALNEIPYSKEINYGFVRRLSYVKFVNQYVDEPKGEHQKKVN 357
Query: 642 -SFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDC 700
+ ++L + W +G K DI + + K+ + ++ D
Sbjct: 358 RNLEKRLIKNLS-GIFNWCYEGYKKLCVLDRFPDIQDD-HEMKDLFYDISSPIYSFFKDM 415
Query: 701 CDIGENLWEESHSLAKSYSEYREQEL 726
+ E + + Y + +
Sbjct: 416 KPLNE--RTLTRDIYSIYITWCKDNY 439
>gi|307627703|gb|ADN72007.1| nucleic acid independent nucleoside triphosphatase; phage DNA
primase [Escherichia coli UM146]
Length = 535
Score = 178 bits (452), Expect = 2e-42, Method: Composition-based stats.
Identities = 66/387 (17%), Positives = 136/387 (35%), Gaps = 64/387 (16%)
Query: 389 TDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTK 448
+++R + A + A + + D L +G LDL+TG+ T
Sbjct: 148 SEHRATFSKRVINNAVEALKVIAEPMGEPSGD-------LLPFANGALDLKTGEFSPHTP 200
Query: 449 ELYITKSTGTPFVEGEPSQEFLDLVSGYFE------SEEVMDYFTRCVGMALLGGNK--A 500
E +IT G + P + D + + ++ C + ++ N+
Sbjct: 201 ENWITTHNGIEYTPPAPGENIRDNAPNFHKWLEHAAGKDPRKMMRICAALYMIMANRYDW 260
Query: 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSR 560
Q FI G GGSGKST ++ G Q ++AE + + +++GSR
Sbjct: 261 QMFIEATGDGGSGKSTFTHIASLLAGKQNTVSAEMTSLDDAGGR---------AQVVGSR 311
Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV-RNP 619
++++++ + IK++TGGD + Y ++ + + N + +
Sbjct: 312 LIVLADQPKYTG-EGTGIKKITGGDPVEINPKYEKRFTAVIRA--VVLATNNNPMIFTER 368
Query: 620 DDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPE 677
RR ++ FD + A +D +K+ + + ++ + PE
Sbjct: 369 AGGVARRRVIFRFDNIVSEAEKDRELPEKIAAEIPVIIRRLLA-----------NFADPE 417
Query: 678 VCLKAKEEERQG---------TDTY------QAWIDDC--CDIGENL----WEESHSLAK 716
E+R G TD ++++ +G + +SL +
Sbjct: 418 KARALLIEQRDGDEALAIKQQTDPVIEFCQFLNFLEEARGLMMGGGGDSVKYTTRNSLYR 477
Query: 717 SYSEYREQELNYDRKRISTRTVTLNLK 743
Y + K ++ +K
Sbjct: 478 VYLAFMAYAGRS--KPLNVNDFGKAMK 502
>gi|126659382|ref|ZP_01730517.1| hypothetical protein CY0110_15055 [Cyanothece sp. CCY0110]
gi|126619341|gb|EAZ90075.1| hypothetical protein CY0110_15055 [Cyanothece sp. CCY0110]
Length = 1044
Score = 178 bits (452), Expect = 3e-42, Method: Composition-based stats.
Identities = 62/505 (12%), Positives = 152/505 (30%), Gaps = 44/505 (8%)
Query: 308 SDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITA--------SIMNFL 359
++ K ++ + K WY + +W+ + + +
Sbjct: 313 TEKGLTDYLVSMYKDRIIFNGEIKEWYLYEDETKGVWTPRTKMEVEQRILFDLNDLTDEI 372
Query: 360 VSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITS 419
+++E V + E++N+ K ++ + S +T
Sbjct: 373 DNVREQVLKAIKAVEESNREKKEKIEIMKQLKKQLPKSRTYTIRFVENLRRHISTVLLTK 432
Query: 420 DL-LDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE 478
+ +S + ++G+LD+ + + + Y T S + + + +
Sbjct: 433 KMQTNSIEGIIPFRNGVLDIARKELLPHSPTNYFTWSLPYDYNPLATGEPIKQWLLEMMQ 492
Query: 479 SEE-VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
+E +++ + + G Q+F+ + G GG+GKSTL+ L G
Sbjct: 493 GDESLVELIRAYLHGVVTGRADWQKFLELIGPGGTGKSTLIRLAIALVGFSNCHVTTLKR 552
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
+ ++ + R+V++++ + +K +TG D +
Sbjct: 553 LETSK--------FETANIKDKRLVLVTDAERYTG-DVTTLKALTGEDSLPYEKKMQQAT 603
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD-ASFAQKLETKYTLEAK 656
I N+H+ + RR I + + I+ + + +
Sbjct: 604 GGFKPDCLVIIAGNEHIKTADYTSGLQRRRITVGMKRKISEENQKNLIKHDNQGNISGEF 663
Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKE----------EERQGTDTYQAWIDDCCDIGEN 706
++ G ++ + E A + E + AW+++ +
Sbjct: 664 VPYIPGFLNWVLEMESESASECIKNAHKRCVKLTLERIESMVENNPIAAWLNENIIYDPD 723
Query: 707 LWEESHSLAKS--------------YSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIK 752
+ S Y Y IS + L
Sbjct: 724 SYTHVGKAIASKENDEVYIGASKWLYPNYCAFCEGIKVNPISLNRFSTLLLDLCNHQLNL 783
Query: 753 REKIEKEWKSKRIIKGLKLKPAFES 777
+ + ++ I+GLK++ +
Sbjct: 784 GDVTKDRNRNGVFIQGLKIRDHLDD 808
>gi|26247364|ref|NP_753404.1| hypothetical protein c1495 [Escherichia coli CFT073]
gi|26107765|gb|AAN79964.1|AE016759_238 Hypothetical protein c1495 [Escherichia coli CFT073]
Length = 584
Score = 178 bits (451), Expect = 3e-42, Method: Composition-based stats.
Identities = 66/387 (17%), Positives = 136/387 (35%), Gaps = 64/387 (16%)
Query: 389 TDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTK 448
+++R + A + A + + D L +G LDL+TG+ T
Sbjct: 197 SEHRATFSKRVINNAVEALKVIAEPMGEPSGD-------LLPFANGALDLKTGEFSPHTP 249
Query: 449 ELYITKSTGTPFVEGEPSQEFLDLVSGYFE------SEEVMDYFTRCVGMALLGGNK--A 500
E +IT G + P + D + + ++ C + ++ N+
Sbjct: 250 ENWITTHNGIEYTPPAPGENIRDNAPNFHKWLEHAAGKDPRKMMRICAALYMIMANRYDW 309
Query: 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSR 560
Q FI G GGSGKST ++ G Q ++AE + + +++GSR
Sbjct: 310 QMFIEATGDGGSGKSTFTHIASLLAGKQNTVSAEMTSLDDAGGR---------AQVVGSR 360
Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV-RNP 619
++++++ + IK++TGGD + Y ++ + + N + +
Sbjct: 361 LIVLADQPKYTG-EGTGIKKITGGDPVEINPKYEKRFTAVIRA--VVLATNNNPMIFTER 417
Query: 620 DDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPE 677
RR ++ FD + A +D +K+ + + ++ + PE
Sbjct: 418 AGGVARRRVIFRFDNIVSEAEKDRELPEKIAAEIPVIIRRLLA-----------NFADPE 466
Query: 678 VCLKAKEEERQG---------TDTY------QAWIDDC--CDIGENL----WEESHSLAK 716
E+R G TD ++++ +G + +SL +
Sbjct: 467 KARALLIEQRDGDEALAIKQQTDPVIEFCQFLNFLEEARGLMMGGGGDSVKYTTRNSLYR 526
Query: 717 SYSEYREQELNYDRKRISTRTVTLNLK 743
Y + K ++ +K
Sbjct: 527 VYLAFMAYAGRS--KPLNVNDFGKAMK 551
>gi|281600549|gb|ADA73533.1| Bacteriophage P4 DNA primase [Shigella flexneri 2002017]
Length = 499
Score = 178 bits (451), Expect = 3e-42, Method: Composition-based stats.
Identities = 64/380 (16%), Positives = 139/380 (36%), Gaps = 50/380 (13%)
Query: 389 TDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTK 448
+++R + A + A + + D L +G LDL+TG+ T
Sbjct: 112 SEHRATFSKRVINNAVEALKVIAEPMGEPSGD-------LLPFANGALDLKTGEFSPHTP 164
Query: 449 ELYITKSTGTPFVEGEPSQEFLDLVSGYFE------SEEVMDYFTRCVGMALLGGNK--A 500
E +IT G + P + D + + ++ C + ++ N+
Sbjct: 165 ENWITTHNGIEYTPPAPGENIRDNALNFHKWLEHAAGKDQRKMMRICAALYMIMANRYDW 224
Query: 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSR 560
Q FI G GGSGKST ++ G Q ++AE + + +++GSR
Sbjct: 225 QMFIEATGDGGSGKSTFTHIASLLAGKQNTVSAEMTSLDDAGGR---------AQVVGSR 275
Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV-RNP 619
++++++ + IK++TGGD + Y ++ + + N + +
Sbjct: 276 LIVLADQPKYTG-EGTGIKKITGGDPVEINPKYEKRFTAVIRA--VVLATNNNPMIFTER 332
Query: 620 DDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEAKKWFL-----KGVKAYISKGLD 672
RR ++ FD + A +D +K+ + + ++ + +A + + D
Sbjct: 333 AGGVARRRVIFRFDNIVSEAEKDRELPEKIAAEIPVIIRRLLANFTDSEKARALLLEQRD 392
Query: 673 VDIPEVCLKAKE---EERQGTDTYQAWIDDC--CDIGENL----WEESHSLAKSYSEYRE 723
D + + E Q + ++++ +G + +SL + Y +
Sbjct: 393 GDEALAIKQQTDPVIEFCQ----FLNFLEEARGLMMGGGGDSVKYTTRNSLYRVYLAFMA 448
Query: 724 QELNYDRKRISTRTVTLNLK 743
K ++ +K
Sbjct: 449 YAGRS--KPLNVNDFGKAMK 466
>gi|237707148|ref|ZP_04537629.1| bacteriophage P4 DNA primase [Escherichia sp. 3_2_53FAA]
gi|226898358|gb|EEH84617.1| bacteriophage P4 DNA primase [Escherichia sp. 3_2_53FAA]
gi|294493409|gb|ADE92165.1| conserved hypothetical protein [Escherichia coli IHE3034]
gi|323958175|gb|EGB53884.1| phage/plasmid primase [Escherichia coli H263]
Length = 582
Score = 178 bits (451), Expect = 3e-42, Method: Composition-based stats.
Identities = 89/561 (15%), Positives = 179/561 (31%), Gaps = 90/561 (16%)
Query: 239 ETRGSSKGKEIARRWSKQGSTYDEENFNYKW---------DTFDFEEIGDTAKKRSTFTS 289
GS A++W +Q +N W D G +
Sbjct: 23 IFAGSD-AWSHAKQWQEQDGPASGDNVPPVWLGPNQLAELDALKIVPDGKKRVRLYQAGE 81
Query: 290 LFYHHGKLIPKGLLASRFSDA--YNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLT 347
L K I + L A+ DA Y + M + Y + + + +
Sbjct: 82 LDLVETKKIGQKLAAADIQDANFYPEGMHVQKCENWRRYLNAER---ENIAAGLTMPEQK 138
Query: 348 LDKITASIMNFLVSMKEDVFD-LSEEPEDN------------NKNSKSPRFWFNTDYRRQ 394
++ + + + FD + PE + R +
Sbjct: 139 NTQLAQMADSERAQLLAERFDGVCVHPESEIVHVWRGGVWCPVSTMELSREMVAIYSEHR 198
Query: 395 NVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITK 454
+ ++L+ I + + S L +G LDL+TG+ T E +IT
Sbjct: 199 ATFSKRVINNAVEALKV-----IAEPMGEPSGDLLPFANGALDLKTGEFSPHTPENWITT 253
Query: 455 STGTPFVEGEPSQEFLDLVSGYFE------SEEVMDYFTRCVGMALLGGNK--AQRFIHI 506
G + P + D + + ++ C + ++ N+ Q FI
Sbjct: 254 HNGIEYTPPAPGENIRDNAPNFHKWLEHAAGKDPRKMMRICAALYMIMANRYDWQMFIEA 313
Query: 507 RGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISE 566
G GGSGKST ++ G Q ++AE + + +++GSR++++++
Sbjct: 314 TGDGGSGKSTFTHIASLLAGKQNTVSAEMTSLDDAGGR---------AQVVGSRLIVLAD 364
Query: 567 TNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV-RNPDDAWWR 625
+ IK++TGGD + Y ++ + + N + + R
Sbjct: 365 QPKYTG-EGTGIKKITGGDPVEINPKYEKRFTAVIRA--VVLATNNNPMIFTERAGGVAR 421
Query: 626 RYIVIPFDKPI--ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAK 683
R ++ FD + A +D +K+ + + ++ + PE
Sbjct: 422 RRVIFRFDNIVSEAEKDRELPEKIAAEIPVIIRRLLA-----------NFADPEKARALL 470
Query: 684 EEERQG---------TDTY------QAWIDDC--CDIGENL----WEESHSLAKSYSEYR 722
E+R G TD ++++ +G + +SL + Y +
Sbjct: 471 IEQRDGDEALAIKQQTDPVIEFCQFLNFLEEARGLMMGGGGDSVKYTTRNSLYRVYLAFM 530
Query: 723 EQELNYDRKRISTRTVTLNLK 743
K ++ +K
Sbjct: 531 AYAGRS--KPLNVNDFGKAMK 549
>gi|432620|emb|CAA53920.1| unnamed protein product [Streptomyces phage phiC31]
Length = 519
Score = 177 bits (450), Expect = 5e-42, Method: Composition-based stats.
Identities = 47/263 (17%), Positives = 87/263 (33%), Gaps = 30/263 (11%)
Query: 308 SDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVF 367
SDA N + G Y + ++ D +T K + + +M +
Sbjct: 278 SDAMNAHALVAWTDGRIKYAS-GLGYFVWDG-------VTWVKSATRVRQEIHAMGAALV 329
Query: 368 DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSR 427
PE ++ + L + + ++ D+++
Sbjct: 330 LAGCLPESRG------------------FTMTTRIDALMTELRSVPSVHVEAEEFDANAH 371
Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESE-EVMDYF 486
L +G++DL TG+ K +T S + + + + F + +++ Y
Sbjct: 372 LLSFANGVVDLRTGKLRAHDKGDMLTVSLPIEYDPNAQAPRWEQFLQEIFPNNADLVGYM 431
Query: 487 TRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEA 546
R VG + G Q F + G G +GKS + FG +
Sbjct: 432 RRLVGYGITGNTSEQCFAVLWGKGANGKSVFTETLTDVFGRI-TKTTPFATFEDK--GNG 488
Query: 547 GKANPSLIRLMGSRIVIISETNE 569
G L L GSR+V+ SE +
Sbjct: 489 GGIPNDLAALRGSRLVMASEASR 511
>gi|332761077|gb|EGJ91364.1| phage/plasmid primase [Shigella flexneri K-671]
Length = 532
Score = 177 bits (449), Expect = 6e-42, Method: Composition-based stats.
Identities = 64/380 (16%), Positives = 139/380 (36%), Gaps = 50/380 (13%)
Query: 389 TDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTK 448
+++R + A + A + + D L +G LDL+TG+ T
Sbjct: 145 SEHRATFSKRVINNAVEALKVIAEPMGEPSGD-------LLPFANGALDLKTGEFSPHTP 197
Query: 449 ELYITKSTGTPFVEGEPSQEFLDLVSGYFE------SEEVMDYFTRCVGMALLGGNK--A 500
E +IT G + P + D + + ++ C + ++ N+
Sbjct: 198 ENWITTHNGIEYTPPAPGENIRDNALNFHKWLEHAAGKDQRKMMRICAALYMIMANRYDW 257
Query: 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSR 560
Q FI G GGSGKST ++ G Q ++AE + + +++GSR
Sbjct: 258 QMFIEATGDGGSGKSTFTHIASLLAGKQNTVSAEMTSLDDAGGR---------AQVVGSR 308
Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV-RNP 619
++++++ + IK++TGGD + Y ++ + + N + +
Sbjct: 309 LIVLADQPKYTG-EGTGIKKITGGDPVEINPKYEKRFTAVIRA--VVLATNNNPMIFTER 365
Query: 620 DDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEAKKWFL-----KGVKAYISKGLD 672
RR ++ FD + A +D +K+ + + ++ + +A + + D
Sbjct: 366 AGGVARRRVIFRFDNIVSEAEKDRELPEKIAAEIPVIIRRLLANFTDSEKARALLLEQRD 425
Query: 673 VDIPEVCLKAKE---EERQGTDTYQAWIDDC--CDIGENL----WEESHSLAKSYSEYRE 723
D + + E Q + ++++ +G + +SL + Y +
Sbjct: 426 GDEALAIKQQTDPVIEFCQ----FLNFLEEARGLMMGGGGDSVKYTTRNSLYRVYLAFMA 481
Query: 724 QELNYDRKRISTRTVTLNLK 743
K ++ +K
Sbjct: 482 YAGRS--KPLNVNDFGKAMK 499
>gi|284176401|ref|YP_003406676.1| phage/plasmid primase, P4 family [Haloterrigena turkmenica DSM 5511]
gi|284018058|gb|ADB64003.1| phage/plasmid primase, P4 family [Haloterrigena turkmenica DSM 5511]
Length = 1285
Score = 177 bits (449), Expect = 6e-42, Method: Composition-based stats.
Identities = 64/386 (16%), Positives = 125/386 (32%), Gaps = 33/386 (8%)
Query: 417 ITSDLLDS---SSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEG---EPSQEFL 470
+ + ++ + + +G+ D + G+ + + T+S + E
Sbjct: 663 VDREEFNAEEIDADLVCLGNGVYDFDAGKLREHDPKYLFTQSIPWDYPENPESAECPAIE 722
Query: 471 DLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF-GNQY 529
+ + + E +G ALL + F+ + G G +GK+T N+++ G
Sbjct: 723 EFMDDITQREADKLTMYEFIGHALLPHYDYKAFMVLFGPGDNGKTTFYNVVEQLLGGQSN 782
Query: 530 VINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTA 589
+ AE ++I +NR ++G+ I +E N + IK+MTGGD
Sbjct: 783 ISAAEMAEIAENRFRAET--------VIGNYANIAAEMNARKIDDMGMIKKMTGGDTFQV 834
Query: 590 RLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVI--------------PFDKP 635
G E + T N+ + R I PF+K
Sbjct: 835 EPK-GKPAYEVQNTATMMFGCNEPPVLPERGRKIATRLYPIELPYEFKNDPSPNNPFEKQ 893
Query: 636 IANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQA 695
+ A+ ++G I + + +PE + E Q +D +
Sbjct: 894 GRPQSELLAEITTESELQGLLVKAIEGAHRLIDRNGEFSLPETAEERMELYEQHSDPIKQ 953
Query: 696 WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755
+ C + + Y E+ + D K S L+Q F R +
Sbjct: 954 FSVKCLENESGKRVAKDDVYNVYVEFCRET---DAKVTSKSVFFKKLRQTTFSYSETRPR 1010
Query: 756 IEKEWKSKRIIKGLKLKPAFESVDDN 781
+ + + K + D
Sbjct: 1011 ADGDGERKLYLDNATFADQAARYTDE 1036
>gi|300902120|ref|ZP_07120125.1| phage/plasmid primase, P4 family protein [Escherichia coli MS 84-1]
gi|301306883|ref|ZP_07212930.1| phage/plasmid primase, P4 family protein [Escherichia coli MS
124-1]
gi|300405785|gb|EFJ89323.1| phage/plasmid primase, P4 family protein [Escherichia coli MS 84-1]
gi|300837892|gb|EFK65652.1| phage/plasmid primase, P4 family protein [Escherichia coli MS
124-1]
gi|315252746|gb|EFU32714.1| phage/plasmid primase, P4 family protein [Escherichia coli MS 85-1]
gi|320180578|gb|EFW55508.1| DNA primase , phage-associated / Replicative helicase RepA
[Shigella boydii ATCC 9905]
Length = 584
Score = 177 bits (448), Expect = 7e-42, Method: Composition-based stats.
Identities = 66/387 (17%), Positives = 137/387 (35%), Gaps = 64/387 (16%)
Query: 389 TDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTK 448
+++R + A + A + + D L +G LDL+TG+ T
Sbjct: 197 SEHRATFSKRVINNAVEALKVIAEPMGEPSGD-------LLPFANGALDLKTGEFSPHTP 249
Query: 449 ELYITKSTGTPFVEGEPSQEFLDLVSGYFE------SEEVMDYFTRCVGMALLGGNK--A 500
E +IT G + P + D + + ++ C + ++ N+
Sbjct: 250 ENWITTHNGIEYTPPAPGENIRDNAPNFHKWLEHAAGKDPRKMMRICAALYMIMANRYDW 309
Query: 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSR 560
Q FI G GGSGKST ++ G Q ++AE + + +++GSR
Sbjct: 310 QMFIEATGDGGSGKSTFTHIASLLAGKQNTVSAEMTSLDDAGGR---------AQVVGSR 360
Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV-RNP 619
++++++ + IK++TGGD + Y ++ + + N + +
Sbjct: 361 LIVLADQPKYTG-EGTGIKKITGGDPVEINPKYEKRFTAVIRA--VVLATNNNPMIFTER 417
Query: 620 DDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPE 677
RR ++ FD + A +D +K+ + + ++ + PE
Sbjct: 418 AGGVARRRVIFRFDNIVSEAEKDRELPEKIAAEIPVIIRRLLA-----------NFTDPE 466
Query: 678 VCLKAKEEERQG---------TDTY------QAWIDDC--CDIGENL----WEESHSLAK 716
E+R G TD ++++ +G + +SL +
Sbjct: 467 KARALLLEQRDGDEALAIKQQTDPVIEFCQFLNFLEEARGLMMGGGGDSVKYTTRNSLYR 526
Query: 717 SYSEYREQELNYDRKRISTRTVTLNLK 743
Y + K ++ + +K
Sbjct: 527 VYLAFMAYAGRS--KPLNVAEFSKAMK 551
>gi|240047623|ref|YP_002961011.1| hypothetical protein MCJ_005030 [Mycoplasma conjunctivae HRC/581]
gi|239985195|emb|CAT05208.1| HYPOTHETICAL PROTEIN MCJ_005030 [Mycoplasma conjunctivae]
Length = 745
Score = 177 bits (448), Expect = 7e-42, Method: Composition-based stats.
Identities = 111/749 (14%), Positives = 229/749 (30%), Gaps = 122/749 (16%)
Query: 21 IPLRLGDKRPQRLGKWEEQLLSSEKIDKLP-ACGFGFVCGVGEQPLYAFDIDSKD-EKTA 78
IPL DK P R+ KW + K+ ++ G + DID+KD +T+
Sbjct: 21 IPLNA-DKSP-RIKKWSGTGSTRYKLKEIFSEQNIGMIV---PPNYCVIDIDNKDNPETS 75
Query: 79 NTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQG-HLDILGCGQYFVA 137
+ L + + F + K T G DI + A
Sbjct: 76 TKLINLITRLKLKTSIL---ETTRGHHFFFHCSIAKPYTDTLLALGIKADIKTGFKN--A 130
Query: 138 YNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTW 197
Y + + K W LL + ++YL +F I + + +
Sbjct: 131 YTMIKQNGKWRKWIQ-----------LLEPQKLDYLPRFLTPIGGRIAEKIAELDTPTNL 179
Query: 198 TNNNNRQYTNREITAF--LSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRW-- 253
+ R + L +E + ++ + + + K+I +
Sbjct: 180 VEGSRRNNFFARVFPLYRLGYSKQEIIDII--TYLNIFFVSKPIS--GHEIKKIFDGFDN 235
Query: 254 ----SKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSD 309
YD++N + F + T ++ + + G LLA +
Sbjct: 236 IFINQNLTPDYDKDNQGD--NQELFANLEATTRQEGLPSPFEFFQGSKFKHNLLADYLIE 293
Query: 310 AYNKAMFS--IYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVF 367
Y+ +F+ IY ++Y D K+ ++ + +
Sbjct: 294 KYHIKIFNELIYFYNGYIYVCDEV------------------KLNGKMLEIVPDLTMR-- 333
Query: 368 DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSR 427
+ Q V +N K T E +
Sbjct: 334 ------------------------QIQEVTKNILNKPTITYAEL---------EFN---- 356
Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESE-EVMDYF 486
+ ++ ++++ T + + + +I + + + + ++ +++
Sbjct: 357 IVALKNNLVNINTREIMPFDPKYFIINQLPIDYDDKADDSQIQRFLKQICSNDIQLVQIL 416
Query: 487 TRCVGMALLGGNKAQRFIHIRGV-GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545
+G L G + Q+ + + G +GKST ++L+ FG N ++
Sbjct: 417 MEFLGYCLTGDLRYQKALLLFGPSAANGKSTFLSLVIALFGKTNTSNIALENV------- 469
Query: 546 AGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFT 605
L+ I I + + + A +K + GD +TA + +S
Sbjct: 470 --GKRFQTANLLNKMINIGGDISVDHIKEPATLKNLITGDIITAEFKGRDVFSFE-NKAK 526
Query: 606 PFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAK-KWFLKG 662
NK + ++RR+I++PF N D + KL T L A L+G
Sbjct: 527 MIFATNKLPSSGERSNGFFRRFIILPFLTQFKGDNVDINILDKLRTPANLSALFNLALQG 586
Query: 663 VKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIG---------ENLWEESHS 713
+ G + + E + + W+++ + S
Sbjct: 587 YSRLKTNG-EFTHSQKASLLLELYAKKNNPVILWLEENAKQHGEKGRIYLKKGTIIRQSS 645
Query: 714 LAKSYSEYREQELNYDRKRISTRTVTLNL 742
+Y Y+ Y K +S + +
Sbjct: 646 PYDTYLNYQSFCEKYGYKPLSVINFSEEI 674
>gi|254521909|ref|ZP_05133964.1| primase, putative [Stenotrophomonas sp. SKA14]
gi|219719500|gb|EED38025.1| primase, putative [Stenotrophomonas sp. SKA14]
Length = 549
Score = 177 bits (448), Expect = 9e-42, Method: Composition-based stats.
Identities = 88/482 (18%), Positives = 158/482 (32%), Gaps = 64/482 (13%)
Query: 334 YKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEP--EDNNKNSKSPRFWFNTDY 391
Y D + + I L E + + E R D
Sbjct: 57 YADDMRRANCFRIGGKMDNGEIDFSLYQWNESEGIWAPQATREVEAHALDWMRKHAPEDA 116
Query: 392 RRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILD-LETG------QKV 444
++ + K G + + + G L+ L+ + +
Sbjct: 117 KQSSATSCVKTAILEMIRLPGMKLPES-----QHRAIVPLKGGYLEILKDANKKAYIEYL 171
Query: 445 KPTKELYITKSTGTPFV------------EGEPSQEFLDLVSGYFESEEVMDYFTRCVGM 492
+ IT +P + + + V +
Sbjct: 172 PADPKHGITSLVPAKLNLDQVRSGRYTPKPLDPKSRWAKYLDRFMPDMAVRGLLQEAMAS 231
Query: 493 ALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS 552
+++ + F+ + G G +GKSTL+++++ + + D +
Sbjct: 232 SVMPMCLEKAFLLL-GSGSNGKSTLLHVLRAIHPKNTAVRIDKLD-----------GQFA 279
Query: 553 LIRLMGSRIVIISETNE--NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVP 610
+ L + + +E + +D I +K + D M+A + Y+ P T F+
Sbjct: 280 MAPLASKTLYLATEAPKVLSDPI-QQVLKALISRDPMSAENKGKDAYTTVPRG-TLFLAL 337
Query: 611 NKHLFVRNPDDAWWRRYIVIPFDKPIAN----RDASFAQKLETK--YTLEAKKWFLKGVK 664
N V + + +WR+ +IPF+ +A RD F +KL W L+G
Sbjct: 338 NAMFSVTSHEHGFWRKICMIPFNVRLAENDKDRDPDFHKKLTEDPAEMAVIIDWLLEGAM 397
Query: 665 AYISK-GLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDI-GENLWEESHSLAKSYSEYR 722
I + GL ++PE E+ RQ TDT ++ + I E W + + + Y Y
Sbjct: 398 RLIERGGLPEEMPEAVKALAEQTRQETDTTASYFAERMVIEEEGTWTDKNDIYADYRNYV 457
Query: 723 EQEL-------NYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAF 775
EL KR+ R L KQK G K E+ W + R+ LKP
Sbjct: 458 LDELGRKPVGAEELWKRVRERMPGLQQKQKKATKGSKAER----WVNLRVG---GLKPRL 510
Query: 776 ES 777
E
Sbjct: 511 EG 512
>gi|313683547|ref|YP_004061285.1| phage/plasmid primase, p4 family [Sulfuricurvum kujiense DSM 16994]
gi|313156407|gb|ADR35085.1| phage/plasmid primase, P4 family [Sulfuricurvum kujiense DSM 16994]
Length = 463
Score = 177 bits (448), Expect = 9e-42, Method: Composition-based stats.
Identities = 60/361 (16%), Positives = 138/361 (38%), Gaps = 28/361 (7%)
Query: 428 FLGEQDGILDLETG--QKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDY 485
+ Q+G+L + + + L ++ + F ++ + E +
Sbjct: 111 LINVQNGLLGISKDDIELYEADPSLGYRYVLSYEYIPEAKAPIFEKFLAETVQDENSIKV 170
Query: 486 FTRCVGMALLGGNKAQRFIHIR-GVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544
+G LLG + + + G G +GKS L+ + G N E ++
Sbjct: 171 IYEYMGYILLGKHLSLEAALLLLGDGRNGKSVLIKTLMKFVGEDNTSNVELQEL------ 224
Query: 545 EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604
N ++ + G + + S++++ + ++++ K+ + +T R Y + Y
Sbjct: 225 --SNPNRTVT-MDGKLLNVGSDSSDKN-FDSSQFKRAISNEPITGRRLYHDAYVIKDLPK 280
Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAKKWFLKG 662
F + N L + RR +I FDK IA D +K+E + + ++G
Sbjct: 281 FVFAMNNLPLSQGDTSFGLLRRLKIIKFDKIIAEHEIDRYLDKKIEKELS-GILNLAIEG 339
Query: 663 VKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD-CCDIGENLWEESHSLAKSYSEY 721
++ I +G + KA + + + +I+D E + + L +++ E+
Sbjct: 340 LRRLIKQG-GFTESDAINKAVKSYEDEINMVKRFIEDVSIAHSEKGYMSNQQLYETFVEW 398
Query: 722 REQEL------NYDRKRISTRTV--TLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773
+ E ++ K++ + N KGF + + + + +S+ G +L+
Sbjct: 399 CKDEGIKVPSKSFLLKKLRSSGFAPYKNNAVKGFRVTVTKMTLSPKDESR--YAGKRLRS 456
Query: 774 A 774
Sbjct: 457 K 457
>gi|217324275|ref|ZP_03440359.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str.
TW14588]
gi|217320496|gb|EEC28920.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str.
TW14588]
Length = 584
Score = 176 bits (447), Expect = 1e-41, Method: Composition-based stats.
Identities = 65/387 (16%), Positives = 136/387 (35%), Gaps = 64/387 (16%)
Query: 389 TDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTK 448
+++R + A + A + + D L +G LDL+TG+ T
Sbjct: 197 SEHRATFSKRVINNAVEALKVIAEPMGEPSGD-------LLPFANGALDLKTGEFSPHTP 249
Query: 449 ELYITKSTGTPFVEGEPSQEFLDLVSGYFE------SEEVMDYFTRCVGMALLGGNK--A 500
E +IT G + P + D + + ++ C + ++ N+
Sbjct: 250 ENWITTHNGIEYTPPAPGENIRDNAPNFHKWLDHAAGKDPRKMMRICAALYMIMANRYDW 309
Query: 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSR 560
Q FI G GGSGKST ++ G Q ++AE + + +++GSR
Sbjct: 310 QMFIEATGDGGSGKSTFTHIASLLAGKQNTVSAEMTSLDDAGGR---------AQVVGSR 360
Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV-RNP 619
++++++ + IK++TGGD + Y ++ + + N + +
Sbjct: 361 LIVLADQPKYTG-EGTGIKKITGGDPVEINPKYEKRFTTVIRA--VVLATNNNPMIFTER 417
Query: 620 DDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPE 677
RR ++ FD + +D +K+ + + ++ + PE
Sbjct: 418 AGGVSRRRVIFRFDNIVREDEKDKELPEKIAAEIPVIIRRLLA-----------NFADPE 466
Query: 678 VCLKAKEEERQG---------TDTY------QAWIDDC--CDIGENL----WEESHSLAK 716
E+R G TD ++++ +G + +SL +
Sbjct: 467 KARALLLEQRDGDEALAIKQQTDPVIEFCQFLNFLEEARGLMMGGGGDSVKYTTRNSLYR 526
Query: 717 SYSEYREQELNYDRKRISTRTVTLNLK 743
Y + K ++ + +K
Sbjct: 527 VYLAFMAYAGRS--KPLNVAEFSKAMK 551
>gi|315615444|gb|EFU96076.1| putative DNA primase [Escherichia coli 3431]
Length = 584
Score = 176 bits (447), Expect = 1e-41, Method: Composition-based stats.
Identities = 66/387 (17%), Positives = 137/387 (35%), Gaps = 64/387 (16%)
Query: 389 TDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTK 448
+++R + A + A + + D L +G LDL+TG+ T
Sbjct: 197 SEHRATFSKRVINNAVEALKVIAEPMGEPSGD-------LLPFANGALDLKTGEFSPHTP 249
Query: 449 ELYITKSTGTPFVEGEPSQEFLDLVSGYFE------SEEVMDYFTRCVGMALLGGNK--A 500
E +IT G + P + D + + ++ C + ++ N+
Sbjct: 250 ENWITTHNGIEYTPPAPGENIRDNAPNFHKWLEHAAGKDPRKMMRICAALYMIMANRYDW 309
Query: 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSR 560
Q FI G GGSGKST ++ G Q ++AE + + +++GSR
Sbjct: 310 QMFIEATGDGGSGKSTFTHIASLLAGKQNTVSAEMTSLDDAGGR---------AQVVGSR 360
Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV-RNP 619
++++++ + IK++TGGD + Y ++ + + N + +
Sbjct: 361 LIVLADQPKYTG-EGTGIKKITGGDPVEINPKYEKRFTAVIRA--VVLATNNNPMIFTER 417
Query: 620 DDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPE 677
RR ++ FD + A +D +K+ + + ++ + PE
Sbjct: 418 AGGVARRRVIFRFDNIVSEAEKDRELPEKIAAEIPVIIRRLLA-----------NFTDPE 466
Query: 678 VCLKAKEEERQG---------TDTY------QAWIDDC--CDIGENL----WEESHSLAK 716
E+R G TD ++++ +G + +SL +
Sbjct: 467 KARALLIEQRDGDEALAIKQQTDPVIEFCQFLNFLEEARGLMMGGGGDSVKYTTRNSLYR 526
Query: 717 SYSEYREQELNYDRKRISTRTVTLNLK 743
Y + K ++ + +K
Sbjct: 527 VYLAFMAYAGRS--KPLNVAEFSKAMK 551
>gi|332767356|gb|EGJ97550.1| phage/plasmid primase [Shigella flexneri 2930-71]
Length = 582
Score = 176 bits (447), Expect = 1e-41, Method: Composition-based stats.
Identities = 64/380 (16%), Positives = 139/380 (36%), Gaps = 50/380 (13%)
Query: 389 TDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTK 448
+++R + A + A + + D L +G LDL+TG+ T
Sbjct: 195 SEHRATFSKRVINNAVEALKVIAAPMGEPSGD-------LLPFANGALDLKTGEFSPHTP 247
Query: 449 ELYITKSTGTPFVEGEPSQEFLDLVSGYFE------SEEVMDYFTRCVGMALLGGNK--A 500
E +IT G + P + D + + ++ C + ++ N+
Sbjct: 248 ENWITTHNGIEYTPPAPGENIRDNALNFHKWLEHAAGKDQRKMMRICAALYMIMANRYDW 307
Query: 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSR 560
Q FI G GGSGKST ++ G Q ++AE + + +++GSR
Sbjct: 308 QMFIEATGDGGSGKSTFTHIASLLAGKQNTVSAEMTSLDDAGGR---------AQVVGSR 358
Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV-RNP 619
++++++ + IK++TGGD + Y ++ + + N + +
Sbjct: 359 LIVLADQPKYTG-EGTGIKKITGGDPVEINPKYEKRFTAVIRA--VVLATNNNPMIFTER 415
Query: 620 DDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEAKKWFL-----KGVKAYISKGLD 672
RR ++ FD + A +D +K+ + + ++ + +A + + D
Sbjct: 416 AGGVARRRVIFRFDNIVSEAEKDRELPEKIAAEIPVIIRRLLANFTDSEKARALLLEQRD 475
Query: 673 VDIPEVCLKAKE---EERQGTDTYQAWIDDC--CDIGENL----WEESHSLAKSYSEYRE 723
D + + E Q + ++++ +G + +SL + Y +
Sbjct: 476 GDEALAIKQQTDPVIEFCQ----FLNFLEEARGLMMGGGGDSVKYTTRNSLYRVYLAFMA 531
Query: 724 QELNYDRKRISTRTVTLNLK 743
K ++ +K
Sbjct: 532 YAGRS--KPLNVNDFGKAMK 549
>gi|30062663|ref|NP_836834.1| bacteriophage P4 DNA primase [Shigella flexneri 2a str. 2457T]
gi|56479831|ref|NP_707046.2| bacteriophage P4 DNA primase [Shigella flexneri 2a str. 301]
gi|30040911|gb|AAP16641.1| Bacteriophage P4 DNA primase [Shigella flexneri 2a str. 2457T]
gi|56383382|gb|AAN42753.2| Bacteriophage P4 DNA primase [Shigella flexneri 2a str. 301]
gi|313650411|gb|EFS14818.1| putative DNA primase [Shigella flexneri 2a str. 2457T]
gi|333019317|gb|EGK38600.1| phage/plasmid primase [Shigella flexneri K-304]
Length = 582
Score = 176 bits (446), Expect = 1e-41, Method: Composition-based stats.
Identities = 64/380 (16%), Positives = 139/380 (36%), Gaps = 50/380 (13%)
Query: 389 TDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTK 448
+++R + A + A + + D L +G LDL+TG+ T
Sbjct: 195 SEHRATFSKRVINNAVEALKVIAEPMGEPSGD-------LLPFANGALDLKTGEFSPHTP 247
Query: 449 ELYITKSTGTPFVEGEPSQEFLDLVSGYFE------SEEVMDYFTRCVGMALLGGNK--A 500
E +IT G + P + D + + ++ C + ++ N+
Sbjct: 248 ENWITTHNGIEYTPPAPGENIRDNALNFHKWLEHAAGKDQRKMMRICAALYMIMANRYDW 307
Query: 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSR 560
Q FI G GGSGKST ++ G Q ++AE + + +++GSR
Sbjct: 308 QMFIEATGDGGSGKSTFTHIASLLAGKQNTVSAEMTSLDDAGGR---------AQVVGSR 358
Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV-RNP 619
++++++ + IK++TGGD + Y ++ + + N + +
Sbjct: 359 LIVLADQPKYTG-EGTGIKKITGGDPVEINPKYEKRFTAVIRA--VVLATNNNPMIFTER 415
Query: 620 DDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEAKKWFL-----KGVKAYISKGLD 672
RR ++ FD + A +D +K+ + + ++ + +A + + D
Sbjct: 416 AGGVARRRVIFRFDNIVSEAEKDRELPEKIAAEIPVIIRRLLANFTDSEKARALLLEQRD 475
Query: 673 VDIPEVCLKAKE---EERQGTDTYQAWIDDC--CDIGENL----WEESHSLAKSYSEYRE 723
D + + E Q + ++++ +G + +SL + Y +
Sbjct: 476 GDEALAIKQQTDPVIEFCQ----FLNFLEEARGLMMGGGGDSVKYTTRNSLYRVYLAFMA 531
Query: 724 QELNYDRKRISTRTVTLNLK 743
K ++ +K
Sbjct: 532 YAGRS--KPLNVNDFGKAMK 549
>gi|327252446|gb|EGE64105.1| phage/plasmid primase, P4 family, C-terminal domain protein
[Escherichia coli STEC_7v]
Length = 582
Score = 176 bits (446), Expect = 1e-41, Method: Composition-based stats.
Identities = 89/561 (15%), Positives = 179/561 (31%), Gaps = 90/561 (16%)
Query: 239 ETRGSSKGKEIARRWSKQGSTYDEENFNYKW---------DTFDFEEIGDTAKKRSTFTS 289
GS A++W +Q +N W D G +
Sbjct: 23 IFAGSD-AWSHAKQWQEQDGPASGDNVPPVWLGPNQLAELDALKIVPDGKKRVRLYQAGE 81
Query: 290 LFYHHGKLIPKGLLASRFSDA--YNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLT 347
L K I + L A+ DA Y + M + Y + + + +
Sbjct: 82 LDLVETKKIGQKLAAADIQDANFYPEGMHVQKCENWRRYLNAER---ENIAAGLTMPEQK 138
Query: 348 LDKITASIMNFLVSMKEDVFD-LSEEPEDN------------NKNSKSPRFWFNTDYRRQ 394
++ + + + FD + PE + R +
Sbjct: 139 NTQLAQMADSERAQLLAERFDGVCVHPESEIVHVWRGGVWCPVSTMELSREMVAIYSEHR 198
Query: 395 NVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITK 454
+ ++L+ I + + S L +G LDL+TG+ T E +IT
Sbjct: 199 ATFSKRVINNAVEALKV-----IAEPMGEPSGDLLPFANGALDLKTGEFSPHTPENWITT 253
Query: 455 STGTPFVEGEPSQEFLDLVSGYFE------SEEVMDYFTRCVGMALLGGNK--AQRFIHI 506
G + P + D + + ++ C + ++ N+ Q FI
Sbjct: 254 HNGIEYTPPAPGENIRDNAPNFHKWLEHAAGKDPSKMMRICAALYMIMANRYDWQMFIEA 313
Query: 507 RGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISE 566
G GGSGKST ++ G Q ++AE + + +++GSR++++++
Sbjct: 314 TGDGGSGKSTFTHIASLLAGKQNTVSAEMTSLDDAGGR---------AQVVGSRLIVLAD 364
Query: 567 TNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV-RNPDDAWWR 625
+ IK++TGGD + Y ++ + + N + + R
Sbjct: 365 QQKYTG-EGTGIKKITGGDPVEINPKYEKRFTAVIRA--VVLATNNNPMIFTERAGGVAR 421
Query: 626 RYIVIPFDKPI--ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAK 683
R ++ FD + A +D +K+ + + ++ + PE
Sbjct: 422 RRVIFRFDNIVSEAEKDRELPEKIAAEIPVIIRRLLA-----------NFADPEKARALL 470
Query: 684 EEERQG---------TDTY------QAWIDDC--CDIGENL----WEESHSLAKSYSEYR 722
E+R G TD ++++ +G + +SL + Y +
Sbjct: 471 IEQRDGDEALAIKQQTDPVIEFCQFLNFLEEARGLMMGGGGDSVKYTTRNSLYRVYLAFM 530
Query: 723 EQELNYDRKRISTRTVTLNLK 743
K ++ +K
Sbjct: 531 AYAGRS--KPLNVNDFGKAMK 549
>gi|332759427|gb|EGJ89735.1| phage/plasmid primase [Shigella flexneri 2747-71]
Length = 582
Score = 176 bits (446), Expect = 1e-41, Method: Composition-based stats.
Identities = 64/380 (16%), Positives = 139/380 (36%), Gaps = 50/380 (13%)
Query: 389 TDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTK 448
+++R + A + A + + D L +G LDL+TG+ T
Sbjct: 195 SEHRATFSKRVINNAVEALKVIAEPMGEPSGD-------LLPFANGALDLKTGEFSPHTP 247
Query: 449 ELYITKSTGTPFVEGEPSQEFLDLVSGYFE------SEEVMDYFTRCVGMALLGGNK--A 500
E +IT G + P + D + + ++ C + ++ N+
Sbjct: 248 ENWITTHNGIEYTPPAPGENIRDNALNFHKWLEHAAGKDQRKMMRICAALYMIMANRYDW 307
Query: 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSR 560
Q FI G GGSGKST ++ G Q ++AE + + +++GSR
Sbjct: 308 QMFIEATGDGGSGKSTFTHIASLLAGKQNTVSAEMTSLDDAGGR---------AQVVGSR 358
Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV-RNP 619
++++++ + IK++TGGD + Y ++ + + N + +
Sbjct: 359 LIVLADQPKYTG-EGTGIKKITGGDPVEINPKYEKRFTAVIRA--VVLATNNNPMIFTER 415
Query: 620 DDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEAKKWFL-----KGVKAYISKGLD 672
RR ++ FD + A +D +K+ + + ++ + +A + + D
Sbjct: 416 AGGVARRRVIFRFDNIVSEAEKDRELPEKIAAEIPVIIRRLLANFTDSEKARALLLEQRD 475
Query: 673 VDIPEVCLKAKE---EERQGTDTYQAWIDDC--CDIGENL----WEESHSLAKSYSEYRE 723
D + + E Q + ++++ +G + +SL + Y +
Sbjct: 476 GDEALAIKQQTDPVIEFCQ----FLNFLEEARGLMMGGGGDSVKYTTRNSLYRVYLAFMA 531
Query: 724 QELNYDRKRISTRTVTLNLK 743
K ++ +K
Sbjct: 532 YAGRS--KPLNVNDFGKAMK 549
>gi|330507945|ref|YP_004384373.1| phage/plasmid primase, P4 family [Methanosaeta concilii GP-6]
gi|328928753|gb|AEB68555.1| phage/plasmid primase, P4 family [Methanosaeta concilii GP-6]
Length = 378
Score = 176 bits (446), Expect = 1e-41, Method: Composition-based stats.
Identities = 50/319 (15%), Positives = 107/319 (33%), Gaps = 18/319 (5%)
Query: 421 LLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESE 480
DS + ++G+ + +TG+ + T + Y F +++ + +
Sbjct: 12 KFDSDLSIINMENGLYNWQTGKFLPHTPDYYSVIQIPVRFDPDARCPNIDKMINIVADEK 71
Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540
+ M L Q+ + G GG+GKS +++++ G+ N D+ +
Sbjct: 72 DRMKC-YEMFAYCLYRSYPIQKMFVLFGPGGTGKSYFLDVVQRMLGDVNCSNVSMQDLAK 130
Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGG-DCMTARLNYGNTYSE 599
+R + L I + + A +KQ+T D + A+ ++
Sbjct: 131 DRFASSD--------LYKKLANICGDLDNTAMYQVATLKQLTSNKDRIRAQRKGEKAFNF 182
Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETK-YTLEAK 656
+ P N ++ ++RRY +IPF D F L +
Sbjct: 183 VNFA-KPIFSANHLPSSKDDTSGFYRRYEIIPFMHVFGADEIDQDFLDSLTSDAEISGLF 241
Query: 657 KWFLK-GVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLA 715
+ + + AK + + +++ D + LA
Sbjct: 242 NKVVSILCDLLVRNAFTNQL--NIEDAKSMYKDRSAPEESFFDQFVVEVPGETIAKNMLA 299
Query: 716 KSYSEYREQELNYDRKRIS 734
++EY E L ++ +S
Sbjct: 300 MYFNEYCE-ILGLPKRSMS 317
>gi|332758300|gb|EGJ88623.1| phage/plasmid primase [Shigella flexneri 4343-70]
Length = 498
Score = 176 bits (446), Expect = 2e-41, Method: Composition-based stats.
Identities = 64/380 (16%), Positives = 138/380 (36%), Gaps = 50/380 (13%)
Query: 389 TDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTK 448
+++R + A + A + + D L +G LDL+TG+ T
Sbjct: 111 SEHRATFSKRVINNAVEALKVIAEPMGEPSGD-------LLPFANGALDLKTGEFSPHTP 163
Query: 449 ELYITKSTGTPFVEGEPSQEFLDLVSGYFE------SEEVMDYFTRCVGMALLGGNK--A 500
E +IT G + P + D + + ++ C + ++ N+
Sbjct: 164 ENWITTHNGIEYTPPAPGENIRDNALNFHKWLEHAAGKDQRKMMRICAALYMIMANRYDW 223
Query: 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSR 560
Q FI G GGSGKST ++ G Q ++AE + + +++GSR
Sbjct: 224 QMFIEATGDGGSGKSTFTHIASLLAGKQNTVSAEMTSLDDAGGR---------AQVVGSR 274
Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV-RNP 619
++++++ + IK++TGGD Y ++ + + N + +
Sbjct: 275 LIVLADQPKYTG-EGTGIKKITGGDPAEINPKYEKRFTAVIRA--VVLATNNNPMIFTER 331
Query: 620 DDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEAKKWFL-----KGVKAYISKGLD 672
RR ++ FD + A +D +K+ + + ++ + +A + + D
Sbjct: 332 AGGVARRRVIFRFDNIVSEAEKDRELPEKIAAEIPVIIRRLLANFTDSEKARALLLEQRD 391
Query: 673 VDIPEVCLKAKE---EERQGTDTYQAWIDDC--CDIGENL----WEESHSLAKSYSEYRE 723
D + + E Q + ++++ +G + +SL + Y +
Sbjct: 392 GDEALAIKQQTDPVIEFCQ----FLNFLEEARGLMMGGGGDSVKYTTRNSLYRVYLAFMA 447
Query: 724 QELNYDRKRISTRTVTLNLK 743
K ++ +K
Sbjct: 448 YAGRS--KPLNVNDFGKAMK 465
>gi|110805144|ref|YP_688664.1| bacteriophage P4 DNA primase [Shigella flexneri 5 str. 8401]
gi|110614692|gb|ABF03359.1| Bacteriophage P4 DNA primase [Shigella flexneri 5 str. 8401]
Length = 582
Score = 176 bits (445), Expect = 2e-41, Method: Composition-based stats.
Identities = 64/380 (16%), Positives = 139/380 (36%), Gaps = 50/380 (13%)
Query: 389 TDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTK 448
+++R + A + A + + D L +G LDL+TG+ T
Sbjct: 195 SEHRATFSKRVINNAVEALKVIAEPMGEPSGD-------LLPFANGALDLKTGEFSPHTP 247
Query: 449 ELYITKSTGTPFVEGEPSQEFLDLVSGYFE------SEEVMDYFTRCVGMALLGGNK--A 500
E +IT G + P + D + + ++ C + ++ N+
Sbjct: 248 ENWITTHNGIEYTPPAPGENIRDNALNFHKWLEHAAGKDQRKMMRICAALYMIMVNRYDW 307
Query: 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSR 560
Q FI G GGSGKST ++ G Q ++AE + + +++GSR
Sbjct: 308 QMFIEATGDGGSGKSTFTHIASLLAGKQNTVSAEMTSLDDAGGR---------AQVVGSR 358
Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV-RNP 619
++++++ + IK++TGGD + Y ++ + + N + +
Sbjct: 359 LIVLADQPKYTG-EGTGIKKITGGDPVEINPKYEKRFTAVIRA--VVLATNNNPMIFTER 415
Query: 620 DDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEAKKWFL-----KGVKAYISKGLD 672
RR ++ FD + A +D +K+ + + ++ + +A + + D
Sbjct: 416 AGGVARRRVIFRFDNIVSEAEKDRELPEKIAAEIPVIIRRLLANFTDSEKARALLLEQRD 475
Query: 673 VDIPEVCLKAKE---EERQGTDTYQAWIDDC--CDIGENL----WEESHSLAKSYSEYRE 723
D + + E Q + ++++ +G + +SL + Y +
Sbjct: 476 GDEALAIKQQTDPVIEFCQ----FLNFLEEARGLMMGGGGDSVKYTTRNSLYRVYLAFMA 531
Query: 724 QELNYDRKRISTRTVTLNLK 743
K ++ +K
Sbjct: 532 YAGRS--KPLNVNDFGKAMK 549
>gi|320197682|gb|EFW72293.1| DNA primase, phage-associated / Replicative helicase RepA
[Escherichia coli WV_060327]
Length = 583
Score = 176 bits (445), Expect = 2e-41, Method: Composition-based stats.
Identities = 63/410 (15%), Positives = 140/410 (34%), Gaps = 68/410 (16%)
Query: 389 TDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTK 448
+++R + A + A + + D L +G+L+L+TG+ +
Sbjct: 196 SEHRATFSKRVINNAVEALKVIAAPMGEPSGD-------LLPFTNGVLNLKTGEFSPHSP 248
Query: 449 ELYITKSTGTPFVEGEPSQEFLDLVSGYFE------SEEVMDYFTRCVGMALLGGNK--A 500
E + T G + + D + + ++ C + ++ N+
Sbjct: 249 EHWSTTHNGIEYTPPVAGENIRDNAPNFHKWLEHAAGKDPRKMMRICAALYMIMANRYDW 308
Query: 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSR 560
Q FI G GGSGKST ++ G Q ++AE + + +++GSR
Sbjct: 309 QMFIEATGDGGSGKSTFTHIATLLAGKQNTVSAEMTSLDDAGGR---------AQVVGSR 359
Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV-RNP 619
++++++ + IK++TGGD + Y ++ + + N +
Sbjct: 360 LIVLADQPKYTG-EGTGIKKITGGDPVEINPKYEKRFTTIIRA--VVLATNNDPMIFTER 416
Query: 620 DDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPE 677
RR ++ FD + +D +K+ + + ++ + PE
Sbjct: 417 AGGVSRRRVIFRFDNIVREDEKDKELPEKIAAEIPVIIRRLLA-----------NFADPE 465
Query: 678 VCLKAKEEERQG---------TDTY------QAWIDDC--CDIGENL----WEESHSLAK 716
E+R G TD ++++ +G + +SL +
Sbjct: 466 KARALLLEQRDGDEALAIKQQTDPVVELCAALEFLEEARGLMMGGGGDSVKYTTRNSLYR 525
Query: 717 SYSEYREQELNYDRKRISTRTVTLNLKQK----GFIGGIKREKIEKEWKS 762
Y + K +S ++ G+ ++ K + +
Sbjct: 526 VYMAFMAYTGK--GKCLSVNEFGKAMRSAAKVYGYEYITRKVKGVTQTNA 573
>gi|329767786|ref|ZP_08259302.1| hypothetical protein HMPREF0428_00999 [Gemella haemolysans M341]
gi|328838887|gb|EGF88481.1| hypothetical protein HMPREF0428_00999 [Gemella haemolysans M341]
Length = 626
Score = 175 bits (444), Expect = 2e-41, Method: Composition-based stats.
Identities = 55/361 (15%), Positives = 131/361 (36%), Gaps = 28/361 (7%)
Query: 407 QSLEAGSIFSITSDL---LDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEG 463
Q EA ++ + + L ++ ++G+ +++T + + T ++ IT +
Sbjct: 272 QRREALAMLELLVEQEYQL-RDYNYIAFKNGLYNIKTDEFISFTPDIIITNKINWNYNPK 330
Query: 464 EPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIK 522
+ ++++ ++E+ +G N+ ++ + G +GKST +N++K
Sbjct: 331 SYASLTDEILNNLAINNKEIRMLIEEMIGYTFYRRNELRKAFILTGQKQNGKSTFLNILK 390
Query: 523 YAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMT 582
G++ + + S ++ I + + + + K++
Sbjct: 391 ELLGSKNTSVLDIKHLND---------RFSTAMMVNKLANIGDDISNKKLYDTEQFKKIV 441
Query: 583 GGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDD--AWWRRYIVIPFDKPIANRD 640
G+ +TA + + +P N + + DD A R +++PF +
Sbjct: 442 SGEKITAEQKGRDKFEFTPYC-KLIYSANNIPKLGDGDDAPAVLSRLVIVPFKAYFDSSS 500
Query: 641 ASFA----QKLETKYTLEAK-KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQA 695
+ L T+ ++E L G+K + E + EE + D
Sbjct: 501 PDYKPFIIDDLITEESMEYLINLGLAGLKRVLKN-RKFTESEYTNREFEEYKNEIDPVSE 559
Query: 696 WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755
++ + + + E S + Y EY +E Y+ I T + F K +
Sbjct: 560 YL-ETLNADLIVNEMSGKIYSEYMEYCMREG-YENIPI--NAFTRKVNNF-FNLTTKNRR 614
Query: 756 I 756
+
Sbjct: 615 V 615
>gi|333005686|gb|EGK25204.1| phage/plasmid primase, P4 family [Shigella flexneri K-218]
Length = 535
Score = 175 bits (444), Expect = 2e-41, Method: Composition-based stats.
Identities = 64/380 (16%), Positives = 138/380 (36%), Gaps = 50/380 (13%)
Query: 389 TDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTK 448
+++R + A + A + + D L +G LDL+TG+ T
Sbjct: 148 SEHRATFSKRVINNAVEALKVIAEPMGEPSGD-------LLPFANGALDLKTGEFSPHTP 200
Query: 449 ELYITKSTGTPFVEGEPSQEFLDLVSGYFE------SEEVMDYFTRCVGMALLGGNK--A 500
E +IT G + P + D + + ++ C + ++ N+
Sbjct: 201 ENWITTHNGIEYTPPAPGENIRDNALNFHKWLEHAAGKDQRKMMRICAALYMIMANRYDW 260
Query: 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSR 560
Q FI G GGSGKST ++ G Q ++AE + + +++GSR
Sbjct: 261 QMFIEATGDGGSGKSTFTHIASLLAGKQNTVSAEMTSLDDAGGR---------AQVVGSR 311
Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV-RNP 619
++++++ + IK++TGGD Y ++ + + N + +
Sbjct: 312 LIVLADQPKYTG-EGTGIKKITGGDPAEINPKYEKRFTAVIRA--VVLATNNNPMIFTER 368
Query: 620 DDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEAKKWFL-----KGVKAYISKGLD 672
RR ++ FD + A +D +K+ + + ++ + +A + + D
Sbjct: 369 AGGVARRRVIFRFDNIVSEAEKDRELPEKIAAEIPVIIRRLLANFTDSEKARALLLEQRD 428
Query: 673 VDIPEVCLKAKE---EERQGTDTYQAWIDDC--CDIGENL----WEESHSLAKSYSEYRE 723
D + + E Q + ++++ +G + +SL + Y +
Sbjct: 429 GDEALAIKQQTDPVIEFCQ----FLNFLEEARGLMMGGGGDSVKYTTRNSLYRVYLAFMA 484
Query: 724 QELNYDRKRISTRTVTLNLK 743
K ++ +K
Sbjct: 485 YAGRS--KPLNVNDFGKAMK 502
>gi|268610895|ref|ZP_06144622.1| primase, putative [Ruminococcus flavefaciens FD-1]
Length = 446
Score = 175 bits (444), Expect = 2e-41, Method: Composition-based stats.
Identities = 69/403 (17%), Positives = 138/403 (34%), Gaps = 37/403 (9%)
Query: 393 RQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYI 452
R V+ + A+ + E S+ L + +G+L++ TG+ +
Sbjct: 65 RFKVKSTNIAEVAKRLSEDISLKIDIEGALKRQQYLINFMNGVLNILTGEFTTDRNKWIF 124
Query: 453 TKSTGTPFVE---GEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGV 509
++E F+ + E D R +G L + + + G
Sbjct: 125 DYVFNVNYIEHCTERECPNFMKFIKTSA-GIENKDCIFRSIGFGLSSLTDVKCAVFLIGE 183
Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569
GKSTL+ +I+ A V N + G + ++ +L G ++ I + +
Sbjct: 184 SDGGKSTLLRIIESAVTPGLVSNISFQQL--------GDPHYTI-QLQGKKLNISYDNSS 234
Query: 570 NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIV 629
N K + + + R N P + F N+ ++PD A +RR ++
Sbjct: 235 KALDNEHIFKSIVSCEKIEGRALRENPVQFVP-TAKLFFASNRPYVFKHPDQALYRRMVI 293
Query: 630 IPFD--KPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEER 687
IPF+ P +D KL + + +K +I G D +
Sbjct: 294 IPFEYSIPPDKQDKHLLDKLMDER-DAIFSRAARSLKEFIESGYDFKMSSKGEAYLRSRI 352
Query: 688 QGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQE-------LNYDRKRISTRTVTL 740
+ + +++D + E L ++Y + + + +S
Sbjct: 353 TALHSVEEFLNDRTTLDEKGSVPVSVLYEAYKIWCNENALDADDKSEFKESVLS------ 406
Query: 741 NLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFE-SVDDNS 782
+ I +K+ K KG++LK A E + D++
Sbjct: 407 ------YSPSIDFKKVGPRNSRKIGFKGIRLKTAEELNAPDDT 443
>gi|188494151|ref|ZP_03001421.1| phage/plasmid P4 DNA primase domain protein [Escherichia coli
53638]
gi|188489350|gb|EDU64453.1| phage/plasmid P4 DNA primase domain protein [Escherichia coli
53638]
Length = 584
Score = 175 bits (444), Expect = 2e-41, Method: Composition-based stats.
Identities = 67/389 (17%), Positives = 136/389 (34%), Gaps = 68/389 (17%)
Query: 389 TDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTK 448
+++R + A + A + + D L +G LDL+TG+ T
Sbjct: 197 SEHRATFSKRVINNAVEALKVIAQPMGEPSGD-------LLPFANGALDLKTGEFSPHTP 249
Query: 449 ELYITKSTGTPFVEGEPSQ----------EFLDLVSGYFESEEVMDYFTRCVGMALLGGN 498
E +IT G + P + ++LD +G + + + M +
Sbjct: 250 ENWITTHNGIEYTAPAPGENIRDNAPNFHKWLDHAAGKDPGKMMR--ICAALYMIMANRY 307
Query: 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMG 558
Q FI G GGSGKST ++ G Q ++AE + + +++G
Sbjct: 308 DWQMFIEATGDGGSGKSTFTHIASLLAGKQNTVSAEMTSLDDAGGR---------AQVVG 358
Query: 559 SRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV-R 617
SR++++++ + IK++TGGD + Y ++ + + N + +
Sbjct: 359 SRLIVLADQPKYTG-EGTGIKKITGGDPVEINPKYEKRFTAVIRA--VVLATNNNPMIFT 415
Query: 618 NPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDI 675
RR ++ FD + A +D +K+ + + ++ +
Sbjct: 416 ERAGGVARRRVIFRFDNIVNEAEKDRELPEKIAAEIPVIIRRLLA-----------NFAD 464
Query: 676 PEVCLKAKEEERQG---------TDTY------QAWIDDC--CDIGENL----WEESHSL 714
PE E+R G TD ++++ +G + +SL
Sbjct: 465 PEKARALLLEQRDGDEALAIKQQTDPVIEFCQFLNFLEEARGLMMGGGGDSVKYTTRNSL 524
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLK 743
+ Y + K ++ +K
Sbjct: 525 YRVYLAFMAYAGRT--KPLNVNDFGKAMK 551
>gi|323969627|gb|EGB64914.1| phage/plasmid primase [Escherichia coli TA007]
Length = 582
Score = 175 bits (444), Expect = 2e-41, Method: Composition-based stats.
Identities = 65/387 (16%), Positives = 137/387 (35%), Gaps = 64/387 (16%)
Query: 389 TDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTK 448
+++R + A + A + + D L +G LDL+TG+ T
Sbjct: 195 SEHRATFSKRVINNAVEALKVIAEPMGEPSGD-------LLPFANGALDLKTGEFSPHTP 247
Query: 449 ELYITKSTGTPFVEGEPSQEFLDLVSGYFE------SEEVMDYFTRCVGMALLGGNK--A 500
E +IT G + P + D + + ++ C + ++ N+
Sbjct: 248 ENWITTHNGIEYTPPAPGENIRDNAPNFHKWLEHAAGKDPRKMMRICAALYMIMANRYDW 307
Query: 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSR 560
Q FI G GGSGKST ++ G Q ++AE + + +++GSR
Sbjct: 308 QMFIEATGDGGSGKSTFTHIASLLAGKQNTVSAEMTSLDDAGGR---------AQVVGSR 358
Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV-RNP 619
++++++ + IK++TGGD + Y ++ + + N + +
Sbjct: 359 LIVLADQPKYTG-EGTGIKKITGGDPVEINPKYEKRFTAVIRA--VVLATNNNPMIFTER 415
Query: 620 DDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPE 677
RR ++ FD + A +D +++ + + ++ + PE
Sbjct: 416 AGGVARRRVIFRFDNIVSEAEKDRELPERIAAEIPVIIRRLLA-----------NFADPE 464
Query: 678 VCLKAKEEERQG---------TDTY------QAWIDDC--CDIGENL----WEESHSLAK 716
E+R G TD ++++ +G + +SL +
Sbjct: 465 KARALLLEQRDGDEALAIKQQTDPVIEFCQFLNFLEEARGLMMGGGGDSVKYTTRNSLYR 524
Query: 717 SYSEYREQELNYDRKRISTRTVTLNLK 743
Y + K ++ + +K
Sbjct: 525 VYLAFMAYAGRS--KPLNVAEFSKAMK 549
>gi|320178845|gb|EFW53808.1| DNA primase , phage-associated / Replicative helicase RepA
[Shigella boydii ATCC 9905]
Length = 584
Score = 175 bits (443), Expect = 3e-41, Method: Composition-based stats.
Identities = 65/386 (16%), Positives = 136/386 (35%), Gaps = 62/386 (16%)
Query: 389 TDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTK 448
+++ + A + A + +SD L +G+L+L+TG+ T
Sbjct: 197 SEHGATFSKRAINNAVEALKVIADPMGEPSSD-------LLPFTNGVLNLKTGEFSPHTP 249
Query: 449 ELYITKSTGTPFVEGEPSQEFLDLVSGYFE------SEEVMDYFTRCVGMALLGGNK--A 500
E +IT G + P + D + + ++ C + ++ N+
Sbjct: 250 ENWITTHNGIEYTPPAPGENIRDNAPNFHKWLDHAAGKDPRKMMRICAALYMIMANRYDW 309
Query: 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSR 560
Q FI G GGSGKST ++ G Q ++AE + + +++GSR
Sbjct: 310 QMFIEATGDGGSGKSTFTHIASLLAGKQNTVSAEMTSLDDAGGR---------AQVVGSR 360
Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
++++++ + IK++TGGD + Y ++ + N +F
Sbjct: 361 LIVLADQPKYTG-EGTGIKKITGGDPVEINPKYEKRFTAVIRAVVLATDNNPMIFTERAG 419
Query: 621 DAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEV 678
RR ++ FD + A +D +K+ + + ++ + PE
Sbjct: 420 -GVARRRVIFRFDNIVSEAEKDRELPEKIAAEIPVIIRRLLA-----------NFTDPEK 467
Query: 679 CLKAKEEE---------RQGTDTY------QAWIDDC--CDIGENL----WEESHSLAKS 717
E+ +Q TD ++++ +G + +SL +
Sbjct: 468 ARALLLEQHDGDEALAIKQQTDPVIEFCQFLNFLEEARGLMMGGGGDSVKYTTRNSLYRV 527
Query: 718 YSEYREQELNYDRKRISTRTVTLNLK 743
Y + K ++ +K
Sbjct: 528 YLAFMAYAGRS--KPLNVNDFGKAMK 551
>gi|227542784|ref|ZP_03972833.1| phage/plasmid primase P4 family protein [Corynebacterium
glucuronolyticum ATCC 51866]
gi|227181410|gb|EEI62382.1| phage/plasmid primase P4 family protein [Corynebacterium
glucuronolyticum ATCC 51866]
Length = 510
Score = 175 bits (443), Expect = 3e-41, Method: Composition-based stats.
Identities = 70/531 (13%), Positives = 160/531 (30%), Gaps = 67/531 (12%)
Query: 266 NYKW-DTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHF 324
W D + D K R H L L+ ++ F+ K
Sbjct: 26 AEPWTDPTNPAVFADELKARLFTLGKTEEHPGLNTLVLIGD-VWHRWDGVKFARIKNDDE 84
Query: 325 L---YTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSK 381
L Y W + + + + K +N +M D+ D K
Sbjct: 85 LRQKYLYPRLKWARYKTVSTGKEKVPITKN----LNPKKAMLNDIIDPLRGIV-FTIEGK 139
Query: 382 SPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETG 441
+ D R + + ++ + ++G+LD
Sbjct: 140 DTHHMWIQDTNR--------------------------NDIPTNGALIPMENGLLDANAR 173
Query: 442 QKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE-----------SEEVMDYFTRCV 490
+ T L T + + + + + + +
Sbjct: 174 RLYPHTPNLIATWALPFSYDPKTTCPNWHAFLDDVLQVDAHNTGQLETDPLAKMFLQQWA 233
Query: 491 GMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKAN 550
G + G +A + + + G +GK + + + G + +++ +
Sbjct: 234 GYLISGETRAHKAVIVTGAPRAGKGVMATVFQELMGKENSEVTTFTNL---------GSR 284
Query: 551 PSLIRLMGSRIVIISETNEND--EINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFI 608
L + G + +S++ + + ++ + D M G + + I
Sbjct: 285 FGLANIDGKKFTFMSDSRDGSLNRLATERLLSLIANDPMAVEPK-GKDITTRRLNTRLMI 343
Query: 609 VPNKHLFVRNPDDAWWRRYIVIPFDK-PIANRDASFAQKLETKYTLEAKKWFLKGVKAYI 667
N + + +A R+I + K + N D +L + W L+G+
Sbjct: 344 FSNNVPRMPDSGNAIGTRFICLDLPKSHVGNEDQGLTDRLLGEL-PGILNWALEGLATLK 402
Query: 668 S-KGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQEL 726
+ + + +P+ K + + Q ++++ ++ + L +Y+++
Sbjct: 403 ANEWVFTSLPQSHKKVLLTVNEQANPLQVFVNERVNLVPGAKIALNELHDAYNQWCN--- 459
Query: 727 NYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRI--IKGLKLKPAF 775
+ RI+ T LK G E+ E K++ +KG L P +
Sbjct: 460 DGGYNRINKTTFKERLKALRLNGVKVAERTNMEGHLKKVDAVKGAMLIPNY 510
>gi|218689534|ref|YP_002397746.1| nucleic acid independent nucleoside triphosphatase; phage DNA
primase [Escherichia coli ED1a]
gi|218427098|emb|CAR07979.2| nucleic acid independent nucleoside triphosphatase; phage DNA
primase [Escherichia coli ED1a]
Length = 582
Score = 174 bits (442), Expect = 4e-41, Method: Composition-based stats.
Identities = 64/387 (16%), Positives = 136/387 (35%), Gaps = 64/387 (16%)
Query: 389 TDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTK 448
+++R + A + A + + D L +G+LDL+ G+ T
Sbjct: 195 SEHRATFSKRVINNAVEALKVIAEPMGEPSGD-------LLPFANGVLDLKAGEFSPHTP 247
Query: 449 ELYITKSTGTPFVEGEPSQEFLDLVSGYFE------SEEVMDYFTRCVGMALLGGNK--A 500
E +IT G + P + D + + ++ C + ++ N+
Sbjct: 248 ENWITTHNGIEYTPPAPGENIRDNAPNFHKWLEHAAGKDPRKMMRICAALYMIMANRYDW 307
Query: 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSR 560
Q FI G GGSGKST ++ G Q ++AE + + +++GSR
Sbjct: 308 QMFIEATGEGGSGKSTFTHIASLLAGKQNTVSAEMTSLDDAGGR---------AQVVGSR 358
Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV-RNP 619
++++++ + IK++TGGD + Y ++ + + N + +
Sbjct: 359 LIVLADQPKYTG-EGTGIKKITGGDPVEINPKYEKRFTAVIRA--VVLATNNNPMIFTER 415
Query: 620 DDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPE 677
RR ++ FD + +D +K+ + + ++ + PE
Sbjct: 416 AGGVSRRRVIFRFDNIVREDEKDKDLPEKVAAEIPVIIRRLLA-----------NFADPE 464
Query: 678 VCLKAKEEERQG---------TDTY------QAWIDDC--CDIGENL----WEESHSLAK 716
E+R G TD ++++ +G + +SL +
Sbjct: 465 KARALLLEQRDGDEALAIKQQTDPVIEFCQFLNFLEEARGLMMGGGGDSVKYTTRNSLYR 524
Query: 717 SYSEYREQELNYDRKRISTRTVTLNLK 743
Y + K ++ + +K
Sbjct: 525 VYLAFMAYAGRS--KPLNVAEFSKAMK 549
>gi|94266128|ref|ZP_01289842.1| Phage/plasmid primase P4-like [delta proteobacterium MLMS-1]
gi|93453303|gb|EAT03746.1| Phage/plasmid primase P4-like [delta proteobacterium MLMS-1]
Length = 925
Score = 174 bits (442), Expect = 4e-41, Method: Composition-based stats.
Identities = 78/388 (20%), Positives = 137/388 (35%), Gaps = 42/388 (10%)
Query: 411 AGSIFSI-TSDLLDSSSRF-LGEQDGILDLETGQKVKPTKELYITKSTGTPFVE-GEPSQ 467
A + + T+D + L +G L +E G+ L + F P
Sbjct: 560 AQHVLMLATNDTFFKDAHVGLATPEGFLKIEAGKIETVPLVLGHRQRIKIGFAPEDAPIP 619
Query: 468 EFLDLVSGYFESE------EVMDYFTRCVGMALLGGN-KAQRFIHIRGV-GGSGKSTLMN 519
+F + F+SE + G L G K Q+ G SGK T+
Sbjct: 620 QFERFLKETFQSEVPGEEAQQRGLLQEIAGAILTGCMPKFQKAAMFYDPFGRSGKGTMER 679
Query: 520 LIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIK 579
++ + + P + L G+R+ ++ E E+ I AA K
Sbjct: 680 FLRQLV---------PASFVTAVSPFNWDKEYYVASLAGARLNVVGELPESKPIPAAAFK 730
Query: 580 QMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK----- 634
+TGGD +T R S + + F+ N + + +A++ R++++ F
Sbjct: 731 TVTGGDVLTGRHPNFRPISFTNEAAHLFM-SNHFITTSDHSEAFFTRWLLVEFPNSRLKS 789
Query: 635 --PIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDT 692
PI D A+++ W +KG + +++G V + R+ T++
Sbjct: 790 GLPI---DPDLAERIIADELPGIAHWSMKGARRLLAQG-KFSGSTVHDRLMASWRRTTNS 845
Query: 693 YQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIK 752
+ +I D C++ + E L K Y + RK S V L +
Sbjct: 846 LEEFIHDVCELAPDAHERRSELYKGYKYWC---GENGRKPFSKAKVKDLLAHN-----MA 897
Query: 753 REKIEKEWKSKRIIKGLKLK--PAFESV 778
I +G+KLK P F V
Sbjct: 898 LGIGHTVKDGYEIFRGIKLKETPEFTKV 925
>gi|311743682|ref|ZP_07717488.1| conserved hypothetical protein [Aeromicrobium marinum DSM 15272]
gi|311312812|gb|EFQ82723.1| conserved hypothetical protein [Aeromicrobium marinum DSM 15272]
Length = 1564
Score = 174 bits (442), Expect = 4e-41, Method: Composition-based stats.
Identities = 134/848 (15%), Positives = 249/848 (29%), Gaps = 130/848 (15%)
Query: 6 WKEQAKQAIHNGFK-LIPLRLGDKRP------QRLGKWEEQLLSSEKIDKLPACGFGFVC 58
+ E + G+ ++P+ DK P GK + E P
Sbjct: 9 YAEHVADYVQAGWPCVLPVPPRDKFPPPTGFTGADGKDTDVAQVVEFAGSHPHHSIAL-- 66
Query: 59 GVGEQPLYAFDIDSKDEKT-----ANTFKDTFEILHGTPIVRI--------GQKPKILIP 105
+ D+D +K A+T E L P G P ++
Sbjct: 67 -RMPDGVIGIDVDQYVKKGKQKHGADTLAALVEKLGPLPPTWSSTARGDEHGPGPSRVLL 125
Query: 106 FRMNKEGIKKKKTTESTQGHLDI--LGCGQYFVAYNIHPKTKKEYTWTTP--------PH 155
F++ + T T G ++I VA +I+P+T +Y W P+
Sbjct: 126 FQVPAQRYITNLTAAGT-GDIEIIQRHHRYIVVAPSINPETGTQYQWYDETDQPSDKVPN 184
Query: 156 RFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIP-SKTWTNNNNRQYTNREIT-AF 213
++ + P + +L + + +
Sbjct: 185 PLQLAELP---AAWLAHLLEGATSAGPSAADPASGEALLEQLLDDWRPECADIYGARLNA 241
Query: 214 LSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKG-----------KEIARRWSK---QGST 259
L HD + VHH + +++G + I + +G+
Sbjct: 242 LDTLATADAGSRHDT---MTARVHHLVQLAAQGHPGVAWAITELRVIWDNLTAGELRGNE 298
Query: 260 YDE--------------------ENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIP 299
+D + Y F T++ I
Sbjct: 299 FDRMLLTSARKAVTVVGTVQNPRDPCVYDLA-FMVSGAAPDDATGEPGTAVAPERRWSIR 357
Query: 300 KGLLASRFS-----DAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITAS 354
+ + A F D Y DT W + + W+L D S
Sbjct: 358 EVIGAHAFDPPAELDQPLAQAVLERTYPVVRYAHDTGGWLLRLPDR---WTLAGDLSQWS 414
Query: 355 IMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSI 414
+ + PE + + R + Q + +K A
Sbjct: 415 VAQVAGLL------PIGNPEAEKGSDEHARSRRRARFNTQAGAKAIASKMAALVAAGTHP 468
Query: 415 FSITSDLLDSSSRFLGEQDGI-LDLET-----------GQKVKPTKELYITKSTGTPFVE 462
+I LDS+ L G+ DL++ T L+ T E
Sbjct: 469 CAIDLGGLDSAPDIL-WAGGVPWDLKSCLPDAPVQSWVAAMDPATPHLH----TAAVLPE 523
Query: 463 GEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIK 522
+ + ++ + EV + R + +AL G + + G G GK+ +++L+
Sbjct: 524 RRDTPLWDAFLAAVWPDPEVRAWAVRVLSIALTG-YPDRALPILIGDTGRGKTQVVSLLM 582
Query: 523 YAFGNQYVINAEASDIMQNRPPEAGKANPSLI-RLMGSRIVIISETNENDEINAAKIKQM 581
G+ Y A+ + E KA+ S++ L G R+ I E ++KQ+
Sbjct: 583 SVLGS-YAHAADPRLM----GAEGAKAHASIVFALKGRRLSFIDEGPREGRWAQERLKQL 637
Query: 582 TGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK-PIANRD 640
TGG +TA N + P + T + N + D A R ++P D P A R
Sbjct: 638 TGGGELTANQMNQNPITFRP-THTLVLTTNDEPAL--TDPAIRARARLLPCDGDPEAVRI 694
Query: 641 ASFAQKLE-----TKYTLEAKKWFLKGVKAYISK---GLDVDIPEVCLKAKEEERQGTDT 692
A A + + +++++ P E+ D
Sbjct: 695 ARAAIGHTNSAAWREEAPGVLASMMAEAGSWLAEPTTAHVSAAPIHLRDMAEKVGAEQDP 754
Query: 693 YQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIK 752
+ W+++ + E S L +++ + + + L + F I+
Sbjct: 755 VRVWLEEETEPWEAG-TPSRELYQAFWSSCRRSGIRADVIPTEQRWGRALSR--FEVPIQ 811
Query: 753 REKIEKEW 760
K K
Sbjct: 812 HTKQGKRR 819
>gi|228962689|ref|ZP_04123982.1| hypothetical protein bthur0005_59570 [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|228796994|gb|EEM44311.1| hypothetical protein bthur0005_59570 [Bacillus thuringiensis
serovar pakistani str. T13001]
Length = 195
Score = 174 bits (441), Expect = 5e-41, Method: Composition-based stats.
Identities = 45/206 (21%), Positives = 73/206 (35%), Gaps = 23/206 (11%)
Query: 592 NYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF--DKPIANRDASFAQKLET 649
+ P F F N + D+ WRR +IPF + P RD +KL
Sbjct: 1 MRQEYFEFVP-DFKVFFTTNHKPIIGGLDEGIWRRVKLIPFHLNLPAHKRDKRLPEKLSL 59
Query: 650 KYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIG----E 705
+ W ++G + +GL P +A ++ D ++ + C I E
Sbjct: 60 E-MPGILNWAIEGCMKWKKEGLK--DPRAVAEATGRYQEDMDILGPFLSEVCYIDEPKNE 116
Query: 706 NLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRI 765
+ E+ L Y + + + R+ L+ KGF K +K
Sbjct: 117 AIKMEAKELYNVYETWC---FRSGERALGNRSFYRMLETKGF-------GKTKGTGNKTF 166
Query: 766 IKGLKL---KPAFESVDDNSNIIDFK 788
+ G+ L KPA + V N FK
Sbjct: 167 LTGITLFERKPANKRVIKNEENSHFK 192
>gi|255325885|ref|ZP_05366977.1| phage/plasmid primase, P4 family domain [Corynebacterium
tuberculostearicum SK141]
gi|255297097|gb|EET76422.1| phage/plasmid primase, P4 family domain [Corynebacterium
tuberculostearicum SK141]
Length = 475
Score = 174 bits (441), Expect = 5e-41, Method: Composition-based stats.
Identities = 74/489 (15%), Positives = 166/489 (33%), Gaps = 53/489 (10%)
Query: 294 HGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITA 353
+ L+ K L+ FS N+ ++ W+ + + W +++
Sbjct: 13 NAMLVAKKLVGDVFSTEGNR------NTAYWR-----GQWWLFNGTH---WEQEENEL-- 56
Query: 354 SIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGS 413
+ + + +V K W T N+ E K + +
Sbjct: 57 EVKRPIWTRLGEVML---------SKPKGAEPWSPTTASVSNLMEPLKIALMLKDKKDAP 107
Query: 414 IFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTK-ELYITKSTGTPFVEGEPSQEFLDL 472
+ +++ + Q+G+L+ TG+ ++ EL+ T S + F
Sbjct: 108 FWIEQGHIMNPH-DLIVLQNGVLNFRTGKFMQGNHMELFNTWSLPFSYDATATCPTFEKF 166
Query: 473 VSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVI 531
+ F G A+ G Q+ + + G G GK TL I+ G + V+
Sbjct: 167 LDDTFAHDPAGRAAIQEFAGYAISGRTDLQKALVLVGPPGGGKGTLSRTIQQLVGVENVV 226
Query: 532 NAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISET-NENDEINAAKIKQM---TGGDCM 587
+ + + + L L+G + +I + ++ + ++++ G D +
Sbjct: 227 SPSLTKL---------GSEFGLSDLIGKPLAVIEDARSDYSHTSGTTVERLLSIIGEDAV 277
Query: 588 TARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK--PIANRDASFAQ 645
+ + ++ + + +V N+ + A RR++ + K P RD
Sbjct: 278 SINRKNQSYWNGTLPT-RIMLVSNEVPRFPDASGAMIRRFVAVKLSKSVPEEERDEKLGA 336
Query: 646 KLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD----CC 701
KL+ + W L G+K + + PE + ++D+
Sbjct: 337 KLKAEL-PGIFNWALDGLKR-LEQQHHFTEPETMADIQSMMSDLNSPVANFLDEEPTYRV 394
Query: 702 DIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWK 761
+ + E ++ +Y + E+ R ++ + + L +K K + K
Sbjct: 395 TGNPSDYVELKAVHAAYKSWCEE---VGRSNMNQQNLAQQLDSVSPDIEVKNTKPDAYTK 451
Query: 762 SKRIIKGLK 770
R + G+K
Sbjct: 452 KGRYVFGIK 460
>gi|333004948|gb|EGK24468.1| phage/plasmid primase, P4 family [Shigella flexneri VA-6]
Length = 582
Score = 174 bits (441), Expect = 6e-41, Method: Composition-based stats.
Identities = 65/380 (17%), Positives = 141/380 (37%), Gaps = 50/380 (13%)
Query: 389 TDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTK 448
+++R + A + A + + D L +G LDL+TG+ T
Sbjct: 195 SEHRATFSKRVINNAVEALKVIAEPMGEPSGD-------LLPFANGALDLKTGEFSPHTP 247
Query: 449 ELYITKSTGTPFVEGEPSQEFLDLVSGYFE------SEEVMDYFTRCVGMALLGGNK--A 500
E +IT G + P + D + + ++ C + ++ N+
Sbjct: 248 ENWITTHNGIEYTPPAPGENIRDNALNFHKWLEHAAGKDQRKMMRICAALYMIMANRYDW 307
Query: 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSR 560
Q FI G GGSGKST ++ G Q ++AE + + G+ +++GSR
Sbjct: 308 QMFIEATGDGGSGKSTFTHIASLLAGKQNTVSAEMTSLDDA----GGRP-----QVVGSR 358
Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV-RNP 619
++++++ + IK++TGGD + Y ++ + + N + +
Sbjct: 359 LIVLADQPKYTG-EGTGIKKITGGDPVEINPKYEKRFTAVIRA--VVLATNNNPMIFTER 415
Query: 620 DDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEAKKWFL-----KGVKAYISKGLD 672
RR ++ FD + A +D +K+ + + ++ + +A + + D
Sbjct: 416 AGGVARRRVIFRFDNIVSEAEKDRELPEKIAAEIPVIIRRLLANFTDSEKARALLLEQRD 475
Query: 673 VDIPEVCLKAKE---EERQGTDTYQAWIDDC--CDIGENL----WEESHSLAKSYSEYRE 723
D + + E Q + ++++ +G + +SL + Y +
Sbjct: 476 GDEALAIKQQTDPVIEFCQ----FLNFLEEARGLMMGGGGDSVKYTTRNSLYRVYLAFMA 531
Query: 724 QELNYDRKRISTRTVTLNLK 743
K ++ +K
Sbjct: 532 YAGRS--KPLNVNDFGKAMK 549
>gi|168758806|ref|ZP_02783813.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC4401]
gi|168769867|ref|ZP_02794874.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC4486]
gi|195937923|ref|ZP_03083305.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC4024]
gi|189354443|gb|EDU72862.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC4401]
gi|189361144|gb|EDU79563.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC4486]
Length = 584
Score = 174 bits (440), Expect = 7e-41, Method: Composition-based stats.
Identities = 66/387 (17%), Positives = 137/387 (35%), Gaps = 64/387 (16%)
Query: 389 TDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTK 448
+++R + A + A + + D L +G LDL+TG+ T
Sbjct: 197 SEHRATFSKRVINNAVEALKVIAEPMGEPSGD-------LLPFANGALDLKTGEFSPHTP 249
Query: 449 ELYITKSTGTPFVEGEPSQEFLDLVSGYFE------SEEVMDYFTRCVGMALLGGNK--A 500
E +IT G + P + D + + ++ C + ++ N+
Sbjct: 250 ENWITTHNGIEYTPPAPGENIRDNAPNFHKWLEHAARKDPRKMMRICAALYMIMANRYDW 309
Query: 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSR 560
Q FI G GGSGKST ++ G Q ++AE + + +++GSR
Sbjct: 310 QMFIEASGDGGSGKSTFTHIASLLAGKQNTVSAEMTSLDDAGGR---------AQVVGSR 360
Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV-RNP 619
++++++ + IK++TGGD + Y ++ + + N + +
Sbjct: 361 LIVLADQPKYTG-EGTGIKKITGGDPVEINPKYEKRFTAVIRA--VVLATNNNPMIFTER 417
Query: 620 DDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPE 677
RR ++ FD + A +D +K+ + + ++ + PE
Sbjct: 418 AGGVARRRVIFRFDNIVSEAEKDRELPEKIAAEIPVIIRRLLA-----------NFTDPE 466
Query: 678 VCLKAKEEERQG---------TDTY------QAWIDDC--CDIGENL----WEESHSLAK 716
E+R G TD ++++ +G + +SL +
Sbjct: 467 KARALLLEQRDGDEALAIKQQTDPVIEFCQFLNFLEEARGLMMGGGGDSVKYTTRNSLYR 526
Query: 717 SYSEYREQELNYDRKRISTRTVTLNLK 743
Y + K ++ + +K
Sbjct: 527 VYLAFMAYAGRS--KPLNVAEFSKAMK 551
>gi|333008342|gb|EGK27816.1| phage/plasmid primase [Shigella flexneri K-272]
gi|333019830|gb|EGK39102.1| phage/plasmid primase [Shigella flexneri K-227]
Length = 583
Score = 174 bits (440), Expect = 8e-41, Method: Composition-based stats.
Identities = 64/381 (16%), Positives = 137/381 (35%), Gaps = 51/381 (13%)
Query: 389 TDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTK 448
+++R + A + A + + D L +G LDL+TG+ T
Sbjct: 195 SEHRATFSKRVINNAVEALKVIAEPMGEPSGD-------LLPFANGALDLKTGEFSPHTP 247
Query: 449 ELYITKSTGTPFVEGEPSQEFLDLVSGYFE------SEEVMDYFTRCVG---MALLGGNK 499
E +IT G + P + D + + ++ + R M +
Sbjct: 248 ENWITTHNGIEYTPPAPGENIRDNALNFHKWLEHAAGKDQRNKMMRICAALYMIMANRYD 307
Query: 500 AQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGS 559
Q FI G GGSGKST ++ G Q ++AE + + +++GS
Sbjct: 308 WQMFIEATGDGGSGKSTFTHIASLLAGKQNTVSAEMTSLDDAGGR---------AQVVGS 358
Query: 560 RIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV-RN 618
R++++++ + IK++TGGD + Y ++ + + N + +
Sbjct: 359 RLIVLADQPKYTG-EGTGIKKITGGDPVEINPKYEKRFTAVIRA--VVLATNNNPMIFTE 415
Query: 619 PDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEAKKWFL-----KGVKAYISKGL 671
RR ++ FD + A +D +K+ + + ++ + +A + +
Sbjct: 416 RAGGVARRRVIFRFDNIVSEAEKDRELPEKIAAEIPVIIRRLLANFTDSEKARALLLEQR 475
Query: 672 DVDIPEVCLKAKE---EERQGTDTYQAWIDDC--CDIGENL----WEESHSLAKSYSEYR 722
D D + + E Q + ++++ +G + +SL + Y +
Sbjct: 476 DGDEALAIKQQTDPVIEFCQ----FLNFLEEARGLMMGGGGDSVKYTTRNSLYRVYLAFM 531
Query: 723 EQELNYDRKRISTRTVTLNLK 743
K ++ +K
Sbjct: 532 AYAGRS--KPLNVNDFGKAMK 550
>gi|42761469|ref|NP_976264.1| primase [Acidianus ambivalens]
gi|3059074|emb|CAA12526.1| primase [Acidianus ambivalens]
Length = 909
Score = 173 bits (439), Expect = 8e-41, Method: Composition-based stats.
Identities = 68/350 (19%), Positives = 116/350 (33%), Gaps = 38/350 (10%)
Query: 444 VKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFESEEVMDYFTRCVGMALLG 496
+ + +T PF E LD + + + + +G L
Sbjct: 505 IPHKIRDEVFNNTPLPFQVSELEDLARKLCPRSLDTFKQWAGDKWITLF--EIIGYTLYP 562
Query: 497 GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRL 556
K + + G SGKST + L+K G ++ ++ + L
Sbjct: 563 ATKIKLAFMLLGPRDSGKSTFLQLLKKILGKHNTVSIRVKELFD------SNNRFVMGYL 616
Query: 557 MGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV 616
+ +ET E + + K +TGGD +T+ + + + +P + I NK V
Sbjct: 617 FHKLANLTAETKEYTINDIDRFKTLTGGDQVTSDVKFNGPITFTPYA-KIIIASNKLPNV 675
Query: 617 RN-PDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGL--DV 673
+ D A+WRR+++I F N D F Q + + I G
Sbjct: 676 SDKNDMAFWRRWLIIEFPNTFPNDDNWFRQTFTEEEIEGILTVSILAFARVIINGKFDYQ 735
Query: 674 DIPEVCLKAKEEERQGTDTYQAWIDDCCDIG--------ENLWEESHSLAKSYSEYREQE 725
PE D+ ++I + G +LW L Y EY
Sbjct: 736 QTPEEVRGL---WLNNIDSVWSFIKTYVEKGIITLDPRNADLWVPRKELYNLYKEYC--- 789
Query: 726 LNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKS----KRIIKGLKL 771
L+ +S RT L K F ++ K+ KR G+ +
Sbjct: 790 LDNGFPGVSLRTFANKL-NKYFGITSMKKNFGKKPDGTDDRKRCFVGITI 838
>gi|150019806|ref|YP_001312060.1| ATPase-like protein [Clostridium beijerinckii NCIMB 8052]
gi|149906271|gb|ABR37104.1| ATPase-like protein [Clostridium beijerinckii NCIMB 8052]
Length = 615
Score = 173 bits (439), Expect = 1e-40, Method: Composition-based stats.
Identities = 96/502 (19%), Positives = 166/502 (33%), Gaps = 34/502 (6%)
Query: 307 FSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDV 366
F+D NK F + G+ ++ + N WSL D+ T I D
Sbjct: 117 FAD--NKQAFLSFVNGNLRALINSTDKKRFAYWNGSTWSLLTDEETQIIYG-------DF 167
Query: 367 FDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSS 426
+ S W + + K ++ S I D ++
Sbjct: 168 IQKCNIELSAGQGSLKYEDWLELAKKITKWDTGRNTKEALDKIKRESSRIIDLKKYDLNN 227
Query: 427 RFLGEQDG-ILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFES---EEV 482
+ DG I++L TG+ T+ I ++ V E S +F+ + E
Sbjct: 228 NIICSNDGKIINLNTGEIKNATRNDMILFTSEYNLVNKEESIKFMSEKMSIYLDIIGNER 287
Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542
+D+ + +L Q I + G G +GKS+L N+I+ F + NR
Sbjct: 288 LDFILDLIAYKMLNR-SLQSAIFMIGAGATGKSSLKNIIRDLFKTESSTIPYDYMTTMNR 346
Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602
+ L L +I SE E I++AK K++ +AR + S
Sbjct: 347 GNSDASRDDILASLDNKKIAFCSEGEEEKIISSAKFKKILSHADESARKTNEGLTNVSLQ 406
Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFL 660
+ N D A RR I + FDKPI R+A + + +F+
Sbjct: 407 NLDIVFDTNAMPSFSTMDSAISRRLIFVKFDKPIPIEKRNADYYKDEIFPNFDYVFSYFV 466
Query: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSE 720
I G ++IP+ + D+ ++ E + + + Y
Sbjct: 467 YKAIDMI--GKKLNIPDCVKNDTSTKLSEVDSLLSFSKRIITPFEGSYIKYSEFEEEYLN 524
Query: 721 YREQELNYDRKRISTRTVTLN-------------LKQK-GFIGGIKREKIEKEWKSKRII 766
+ E+E S + LK+K GF K ++I ++
Sbjct: 525 FCEEEGLESVIPYSFQDTGNKKNQTKRCNYIINLLKEKEGFSSIYKGKRISDGSSDQKTY 584
Query: 767 K--GLKLKPAFESVDDNSNIID 786
+ G+ K + V I
Sbjct: 585 QICGITFKDTDDIVPFEDEIEP 606
>gi|191172101|ref|ZP_03033645.1| bacteriophage P4 DNA primase [Escherichia coli F11]
gi|300991771|ref|ZP_07179634.1| phage/plasmid primase, P4 family protein [Escherichia coli MS
200-1]
gi|190907628|gb|EDV67223.1| bacteriophage P4 DNA primase [Escherichia coli F11]
gi|300305525|gb|EFJ60045.1| phage/plasmid primase, P4 family protein [Escherichia coli MS
200-1]
Length = 584
Score = 173 bits (438), Expect = 1e-40, Method: Composition-based stats.
Identities = 65/389 (16%), Positives = 136/389 (34%), Gaps = 68/389 (17%)
Query: 389 TDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTK 448
++++ + A + A + + D L +G LDL+TG+ +
Sbjct: 197 SEHKATFSKRVISNAVEALKVIAEPMGEPSGD-------LLPFANGALDLKTGEFSPHSP 249
Query: 449 ELYITKSTGTPFVEGEPSQ----------EFLDLVSGYFESEEVMDYFTRCVGMALLGGN 498
E +IT G + P + ++LD +G + + + M +
Sbjct: 250 ENWITTHNGIEYTPPVPGENIRDNAPNFHKWLDHAAGKDPGKMMR--ICAALYMIMANRY 307
Query: 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMG 558
Q FI G GGSGKST ++ G Q ++AE + + +++G
Sbjct: 308 DWQMFIEATGDGGSGKSTFTHIASLLAGKQNTVSAEMTSLDDAGGR---------AQVVG 358
Query: 559 SRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV-R 617
SR++++++ + IK++TGGD + Y ++ + + N + +
Sbjct: 359 SRLIVLADQPKYTG-EGTGIKKITGGDPVEINPKYEKRFTAVIRA--VVLATNNNPMIFT 415
Query: 618 NPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDI 675
RR ++ FD + A +D +K+ + + ++ +
Sbjct: 416 ERAGGVARRRVIFRFDNIVSEAEKDRELPEKIAAEIPVIIRRLLA-----------NFAD 464
Query: 676 PEVCLKAKEEERQG---------TDTY------QAWIDDC--CDIGENL----WEESHSL 714
PE E+R G TD ++++ +G + +SL
Sbjct: 465 PEKARALLLEQRDGDEALAIKQQTDPVIEFCQFLNFLEEARGLMMGGGGDSVKYTTRNSL 524
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLK 743
+ Y + K ++ +K
Sbjct: 525 YRVYLAFMAYAGRT--KPLNVNDFGKAMK 551
>gi|255505814|ref|ZP_05348281.3| phage/plasmid primase, P4 family domain protein [Bryantella
formatexigens DSM 14469]
gi|255265791|gb|EET58996.1| phage/plasmid primase, P4 family domain protein [Bryantella
formatexigens DSM 14469]
Length = 586
Score = 173 bits (438), Expect = 1e-40, Method: Composition-based stats.
Identities = 66/489 (13%), Positives = 163/489 (33%), Gaps = 47/489 (9%)
Query: 322 GHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDV---------FDLSEE 372
F+ + K + D N + ++ +I M + + + + +
Sbjct: 118 SDFIMRFERKPSEQPDLNRFHKFNEQGKRIGVLDMEIVDYLIQTIPFFIIGSTPYIYCHG 177
Query: 373 PEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSS-RFLGE 431
+ N + R + ++S +S L + L++ ++
Sbjct: 178 YYQEDSNGILLKSHIQKLLFRDCI-KSSTIQSIYNLLVSQPQIQKKFSDLNNQPTHWINF 236
Query: 432 QDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLD--------LVSGYFESEEVM 483
++G D+ + V+ + + P+ E + + E
Sbjct: 237 KNGYFDVIEWKMVEHDTKYLM--INQIPYSFYPEQHEEIQKQENITKHYLESSLPDEADQ 294
Query: 484 DYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP 543
F + +G + + Q+F+ I+G GG+GKS + LI++ G + + D+ +
Sbjct: 295 QTFWQYLGYCMTTDTRFQKFLMIKGKGGTGKSVAIALIQHIVGIENCSSISLQDLNKRFY 354
Query: 544 PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPAS 603
L G ++ ++ + IK+ G D + + +
Sbjct: 355 ATG---------LFGKQLNACADIPCTAMQSVDIIKKAVGEDTLLYEKKGQDPTQFHSYA 405
Query: 604 FTPFIVPNKHL-FVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEAKKWFL 660
N+ + + +A++RR +V+ ++ + + +D +K+ +
Sbjct: 406 -KLLFSANEMPLNLDDKTNAYYRRLLVLDMNRLVSTSEKDTMLKEKIYKEADYAIHMGIA 464
Query: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSE 720
+ Y + + EE + D+ +A++D+ + + L + Y++
Sbjct: 465 ALKQLYADNHFCESL--HSRECIEELYRSADSVKAFLDEKICRQKGAKLKRSELYQLYTK 522
Query: 721 YREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDD 780
+ E+ DR+ + KG+ K + L LK D
Sbjct: 523 FCEEN---DRQAHGKSVFFRMMSDKGYTL--------KRDCNGFYYDNLSLKDEDFVKVD 571
Query: 781 NSNIIDFKR 789
++ I F++
Sbjct: 572 STEGIPFEQ 580
>gi|324012997|gb|EGB82216.1| phage/plasmid primase, P4 family protein [Escherichia coli MS 60-1]
Length = 584
Score = 173 bits (438), Expect = 1e-40, Method: Composition-based stats.
Identities = 65/389 (16%), Positives = 136/389 (34%), Gaps = 68/389 (17%)
Query: 389 TDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTK 448
++++ + A + A + + D L +G LDL+TG+ +
Sbjct: 197 SEHKATFSKRVISNAVEALKVIAEPMGEPSGD-------LLPFANGALDLKTGEFSPHSP 249
Query: 449 ELYITKSTGTPFVEGEPSQ----------EFLDLVSGYFESEEVMDYFTRCVGMALLGGN 498
E +IT G + P + ++LD +G + + + M +
Sbjct: 250 ENWITTHNGIEYTPPVPGENIRDNAPNFHKWLDHAAGKDPGKMMR--ICAALYMIMANRY 307
Query: 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMG 558
Q FI G GGSGKST ++ G Q ++AE + + +++G
Sbjct: 308 DWQMFIEATGDGGSGKSTFTHIASLLAGKQNTVSAEMTSLDDAGGR---------AQVVG 358
Query: 559 SRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV-R 617
SR++++++ + IK++TGGD + Y ++ + + N + +
Sbjct: 359 SRLIVLADQPKYTG-EGTGIKKITGGDPVEINPKYEKRFTAVIRA--VVLATNNNPMIFT 415
Query: 618 NPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDI 675
RR ++ FD + A +D +K+ + + ++ +
Sbjct: 416 ERAGGVARRRVIFRFDNIVSEAEKDRELPEKIAAEIPVIIRRLLA-----------NFAD 464
Query: 676 PEVCLKAKEEERQG---------TDTY------QAWIDDC--CDIGENL----WEESHSL 714
PE E+R G TD ++++ +G + +SL
Sbjct: 465 PEKARALLLEQRDGDEALAIKQQTDPVIEFCQFLNFLEEARGLMMGGGGDSVKYTTRNSL 524
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLK 743
+ Y + K ++ +K
Sbjct: 525 YRVYLAFMAYAGRT--KPLNVNDFGKAMK 551
>gi|125974238|ref|YP_001038148.1| P4 family phage/plasmid primase [Clostridium thermocellum ATCC
27405]
gi|125714463|gb|ABN52955.1| phage / plasmid primase, P4 family [Clostridium thermocellum ATCC
27405]
Length = 624
Score = 172 bits (436), Expect = 2e-40, Method: Composition-based stats.
Identities = 51/343 (14%), Positives = 113/343 (32%), Gaps = 23/343 (6%)
Query: 429 LGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY-FESEEVMDYFT 487
+ +GI ++ + + + IT + + + E+
Sbjct: 297 IAFNNGIYNIIDDSFTEHSPDFIITNRIPWDYNPNAYFELADKTLDKISCNDAEIRSVLE 356
Query: 488 RCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAG 547
+G N+ + + G +GKST ++++ G + + ++ +
Sbjct: 357 ELIGYTFYRRNEIGKAFILTGEKQNGKSTFLDMVTTLIGISNIAALDLKELGE------- 409
Query: 548 KANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPF 607
L G I + + + K++ GD + A + + + S
Sbjct: 410 --RFKTAELFGKLANIGDDIGDEFIAEPSMFKKLVTGDRVNAERKGKDPFDFNNYS-KLL 466
Query: 608 IVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQ----KLETKYTLEAKKWFLKGV 663
N V++ A RR ++IPF D F +L TK ++E
Sbjct: 467 FSANNVPRVKDKTGAVQRRLLIIPFKAKFTADDPDFRPDIKYELRTKESMEYLILLGLKG 526
Query: 664 KAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYRE 723
I + +E + + + ++ EN E + ++ K+Y E+
Sbjct: 527 LKRILQNKKFTKSIQVEHELKEYEKTNNPIIEFYEEYETKVEN--EPTKNVYKNYLEFC- 583
Query: 724 QELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRII 766
LN + + +S + + ++ G K + + K RI
Sbjct: 584 --LNNNLQPLSHIEFSRQITKR---FGYKTIDKKIDGKKYRIF 621
>gi|168041210|ref|XP_001773085.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162675632|gb|EDQ62125.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 378
Score = 172 bits (436), Expect = 2e-40, Method: Composition-based stats.
Identities = 72/278 (25%), Positives = 124/278 (44%), Gaps = 18/278 (6%)
Query: 349 DKITASIMNFLVSMKEDVFDLSEE-PEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQ 407
D T+ + L M + + D+ E E +K F ++D RR+ A+
Sbjct: 112 DIYTSMMKEILTGMYKFIADICESYMETIELATKIIDFIQSSDNRRK------MMYICAR 165
Query: 408 SLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVE----G 463
L +LLDS +G + G+ + + + + YIT ST PFV
Sbjct: 166 MLYKEGF----EELLDSRRDVIGMKGGVYNFTEDRFRRMELDDYITLSTKIPFVPLDYNS 221
Query: 464 EPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKY 523
E + E LDL++ F ++ + YF R + L G N + F G G + K+ +++L++
Sbjct: 222 EATNEVLDLLAKVFLNKNIRRYFMRFISSCLEGRNANKIFSIWSGSGDNRKTVMVSLVER 281
Query: 524 AFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTG 583
AFG+ Y I S +M R ++ A P L L G I ++ E +E D++N +K++TG
Sbjct: 282 AFGD-YAIKMPTSLLMGKRV-QSSTATPQLAMLKGRLITLVQEPDEGDKLNLGVMKELTG 339
Query: 584 GDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDD 621
+ + R Y + P ++ N+ L + D
Sbjct: 340 NNSLYVRGLYEEG-TIIPQKAKFILIANRILQMSIFDK 376
>gi|62860541|gb|AAY16511.1| putative primase [Gordonia terrae phage GTE5]
Length = 225
Score = 171 bits (434), Expect = 4e-40, Method: Composition-based stats.
Identities = 52/222 (23%), Positives = 101/222 (45%), Gaps = 4/222 (1%)
Query: 551 PSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVP 610
P +I R+V SE + + +++ IK++TGGD +TAR Y N + FTP I
Sbjct: 2 PEIIAAFPRRVVFASEVGQRNRLHSDVIKRLTGGDSVTARALYSNVMVQRTPMFTPIIAT 61
Query: 611 NKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQ-KLETKYTLEAKKWFLKGVKAYISK 669
N + + D A WRR +V+PFD+ + +A + + W + G+ Y+ +
Sbjct: 62 NSMPTIEDGDAALWRRLLVLPFDRQVPLSNADVTPIREVPEALRAVLSWLVDGLLDYLLE 121
Query: 670 GLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYD 729
GLD +P K + GT T+Q + + ++ + + + Y ++ ++E +
Sbjct: 122 GLDTALPTEVTKRRAMFIAGTSTFQMFTAEMLTDDDDGKVVALKVFELYRQWAKRE---E 178
Query: 730 RKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771
++ R +++ G+ + + S+ I G +L
Sbjct: 179 ADPLTRREFYSRMRENGYATKKATVRRAGKVTSETIFTGFRL 220
>gi|212638502|ref|YP_002315022.1| phage associated DNA primase [Anoxybacillus flavithermus WK1]
gi|212559982|gb|ACJ33037.1| Phage associated DNA primase [Anoxybacillus flavithermus WK1]
Length = 620
Score = 170 bits (430), Expect = 9e-40, Method: Composition-based stats.
Identities = 62/465 (13%), Positives = 150/465 (32%), Gaps = 36/465 (7%)
Query: 306 RFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKED 365
F D + +F ++ ++ + K +K LVS +
Sbjct: 178 HFIDEF---VFGEPLGKELIHVIESVNQTYEKKKKGQAVQFLNEKDIVMTSEVLVSRLDI 234
Query: 366 VFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSS 425
+ + + + + N + + +++ K K Q + +F I ++ ++
Sbjct: 235 KYYQQKLYFKQDDH-----YVHNDNKLLREIDKLIKLKP-NQHKQLIELFKIKAEYIEEQ 288
Query: 426 SRFLGEQDGILDLETGQKVKPTKELYIT-KSTGTPFVEGEPSQEFLDLVSGYFES-EEVM 483
+ G + ++ G+ ++ + T + +G + + + + +++
Sbjct: 289 DFPIKLPGGYI-IDDGEVIEA--DYGFTPYYLDVQYQDGAYDEHVDQFLDFFTMNRKDLR 345
Query: 484 DYFTRCVGMALLGGNKAQRFIHIRG-VGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542
G L+ + +G G +GKST + +I G + +D
Sbjct: 346 MVIEEMFGHILMTHSFPHIVFFFQGHKGNNGKSTFLKMINEFAG-ELASQLTLNDFNDA- 403
Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602
S+ L G + I + + + + K + GD + R Y + +
Sbjct: 404 --------TSVAFLEGKLVNIGDDIDASYMEQSKNFKTLASGDPIMVRPIYQQPF-KLKN 454
Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLE-AKKWFLK 661
T N ++ RR +VIP D + RD +KL + + L+
Sbjct: 455 RATLIFTCNDMPTFKDKSGGIARRVVVIPCDNHVKRRDLDLDRKLSSPNAKSYILRLALE 514
Query: 662 GVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEY 721
G++ + G + +E +D+ A+ + + L + + +Y +
Sbjct: 515 GIQRIKANGGKLTDSLTIQAKTKEYFIASDSVLAFESENQHL--ILNRPAKDVYNAYVAF 572
Query: 722 REQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRII 766
+ + L G+ +++ K R
Sbjct: 573 C---FENGLREVGKVEFGRRLANVGYETKVRK----INGKPIRYY 610
>gi|298693735|gb|ADI96957.1| putative DNA primase [Staphylococcus aureus subsp. aureus ED133]
Length = 787
Score = 169 bits (428), Expect = 2e-39, Method: Composition-based stats.
Identities = 55/332 (16%), Positives = 110/332 (33%), Gaps = 33/332 (9%)
Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE-----FLDLVSGY-FES 479
+ ++G+ + +T Q T + T T + F +
Sbjct: 427 PYLIPVKNGVFNRKTKQLESFTPDYIFTTKISTKYNPNVVRPNLNGWDFDHWLYEIACAD 486
Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539
+E++ + ++ G ++ I G G +GK T LI G + V + + ++
Sbjct: 487 KEIVTLLWEVINDSMNGNYTRKKAIFFVGDGNNGKGTFQELISNLVGYKNVASLKVNEF- 545
Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEI-NAAKIKQMTGGDCMTARLNYGNTYS 598
L L G +VI + I +++ K + GD + + Y
Sbjct: 546 --------DHEFKLSVLEGKAVVIGDDVPVGINIEDSSNFKSVVTGDSVLVNVKNKQPYR 597
Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQK-LETKYTLEA 655
+ T N + RR +++PF+ +N + +K L+ + LE
Sbjct: 598 -TEFRCTVIQSTNGMPKFTDKTGGTNRRLLIVPFNADFNDSNENVDIKEKYLKDNHVLE- 655
Query: 656 KKWFLKGVKAYISKGL---DVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESH 712
Y + L IP+V K E +Q D+ + + D
Sbjct: 656 -------YVLYKAINLEFDRFTIPQVSKKMLEIYKQDNDSVYDFKIEEFDQWNIQKVPKK 708
Query: 713 SLAKSYSEYREQELNYDRKRISTRTVTLNLKQ 744
+ Y + E+ ++S RT ++
Sbjct: 709 VVYYRYRAFCEENGYMG--KMSDRTFYRRFEK 738
>gi|307578028|gb|ADN53647.1| primase-like protein [Staphylococcus aureus]
Length = 787
Score = 169 bits (427), Expect = 2e-39, Method: Composition-based stats.
Identities = 55/332 (16%), Positives = 110/332 (33%), Gaps = 33/332 (9%)
Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE-----FLDLVSGY-FES 479
+ ++G+ + +T Q T + T T + F +
Sbjct: 427 PYLIPVKNGVFNRKTKQLESFTPDYIFTTKISTKYNPNVVRPNLNGWDFDHWLYEIACAD 486
Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539
+E++ + ++ G ++ I G G +GK T LI G + V + + ++
Sbjct: 487 KEIVTLLWEVINDSMNGNYTRKKAIFFVGDGNNGKGTFQELISNLVGYKNVASLKVNEF- 545
Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEI-NAAKIKQMTGGDCMTARLNYGNTYS 598
L L G +VI + I +++ K + GD + + Y
Sbjct: 546 --------DHEFKLSVLEGKAVVIGDDVPVGINIEDSSNFKSVVTGDSVLVNVKNKQPYR 597
Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQK-LETKYTLEA 655
+ T N + RR +++PF+ +N + +K L+ + LE
Sbjct: 598 -TEFRCTVIQSTNGMPKFTDKTGGTNRRLLIVPFNADFNDSNENVDIKEKYLKDNHVLE- 655
Query: 656 KKWFLKGVKAYISKGL---DVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESH 712
Y + L IP+V K E +Q D+ + + D
Sbjct: 656 -------YVLYKAINLEFDRFTIPQVSKKMLEIYKQDNDSVYDFKIEEFDQWNIQKVPKK 708
Query: 713 SLAKSYSEYREQELNYDRKRISTRTVTLNLKQ 744
+ Y + E+ ++S RT ++
Sbjct: 709 VVYYRYRAFCEENGYMG--KMSDRTFYRRFEK 738
>gi|293369974|ref|ZP_06616541.1| phage/plasmid primase, P4 family, C-terminal domain protein
[Bacteroides ovatus SD CMC 3f]
gi|292634892|gb|EFF53414.1| phage/plasmid primase, P4 family, C-terminal domain protein
[Bacteroides ovatus SD CMC 3f]
Length = 554
Score = 169 bits (427), Expect = 2e-39, Method: Composition-based stats.
Identities = 50/345 (14%), Positives = 128/345 (37%), Gaps = 23/345 (6%)
Query: 407 QSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKV--KPTKELYITKSTGTPFVEGE 464
+ L A + +++ ++ + ++G G+ + E +T F
Sbjct: 174 KQLLATAALPMSASS--TNEVKINLKNGTFKCYDGKFDFCDFSPEDRLTYQLPFEFNRNA 231
Query: 465 PSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524
+ +F+ + +E + + ++ + + G GG+GKS L++++
Sbjct: 232 KADKFMLFLEEVIPEKEARMLVAEYIAYIFAKHLRWEKCLVLLGSGGNGKSVLIDIVTAL 291
Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGG 584
G Q V + S + + + L + SE + + +KQ+
Sbjct: 292 LGEQNVCHFSLSRLCEANGYYRAEIGNYL-------LNACSEMGSKNT-DPEMVKQLFSN 343
Query: 585 DCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDD--AWWRRYIVIPFDKPIAN--RD 640
D ++AR YG + +++ F+ + ++ + ++RRY+ + F+ I ++
Sbjct: 344 DPVSARSPYGKPVTV--SNYCRFLFSANFISNKDMEQTIGYFRRYLFLEFNATIPEWKKN 401
Query: 641 ASFAQKLETKYTLEAKKWFLKGVKAYIS-KGLDVDIPEVCLKAKEEERQGTDTYQAWI-D 698
+ A+++ + W L+G+K + + + + +++ ++ D
Sbjct: 402 PNLAREIIEEELSGVFNWVLEGLKRILEPNRKGFTYSKHIDNTNKRIERNSNSVALFMCD 461
Query: 699 DCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLK 743
+ EE+ +L Y + E +Y S L+
Sbjct: 462 ENLQPSSEKHEEAKTLYDRYKNFCEDN-HYG--VASKHEFLRRLE 503
>gi|251777906|ref|ZP_04820826.1| conserved hypothetical protein [Clostridium botulinum E1 str. 'BoNT
E Beluga']
gi|243082221|gb|EES48111.1| conserved hypothetical protein [Clostridium botulinum E1 str. 'BoNT
E Beluga']
Length = 643
Score = 168 bits (426), Expect = 3e-39, Method: Composition-based stats.
Identities = 89/496 (17%), Positives = 175/496 (35%), Gaps = 33/496 (6%)
Query: 312 NKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSE 371
NK F + G+ ++ K N W L ++ T + ++ +
Sbjct: 120 NKQAFISFINGNLRALINSVDKNKFAYWNSKAWELLTEEETYMVYGNFITQCNLELRQNI 179
Query: 372 EPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGE 431
+ + S+ + D R E +K K + I ++ + +D + +
Sbjct: 180 NVLEKQEYSEICKRMNKWDTDRNARECLNKVK-----RDKQHIINMKN-YID-NRNLICS 232
Query: 432 QDG-ILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFES---EEVMDYFT 487
DG I++L TG+ + I ++ ++ + EF+ + ++ + +
Sbjct: 233 HDGKIINLATGEIKAANRNDLILFTSKYNLMDKGKAVEFMQEKMKIYLDIIGKDRLLFIL 292
Query: 488 RCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAG 547
+ LL Q I + G +GKST N++K F N+ V+ ++ +
Sbjct: 293 DLISYKLL-DRSLQSAIFMIGTRATGKSTFKNIMKDLFKNENVVIPYNYLTTSHKGNDDK 351
Query: 548 KANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPF 607
+ L L RI SE + I++A+ K + +AR +
Sbjct: 352 SRDDILASLDNKRIAFCSEGEDEQTISSARFKTLLSNSEESARKTGKELMEVNLKGLDII 411
Query: 608 IVPNKHLFVRNPDDAWWRRYIVIPFDKP--IANRDASFAQKLETKYTLEAKKWFLKGVKA 665
N D A RR + + FDKP I R+A + ++ +F+ +A
Sbjct: 412 FDTNSIPSFSTMDGAISRRLMFVKFDKPISIEKRNADYYKEEIAPNFDYVFSYFV--YRA 469
Query: 666 YISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQE 725
G ++IP+ + D+ + + + + + L Y + E E
Sbjct: 470 IAMIGKKLEIPQCIKDDTSLKLSEVDSLLNFSREAIAPFDGGFVKYSELENEYIRFCENE 529
Query: 726 LN--------YDRKRISTRTVTLN--LKQK-GFIGGIKREKIEKEWKSKR--IIKGLKLK 772
D K+ S R + LK+K G+ K ++ + + +I GL
Sbjct: 530 GQKSVIPEVLQDAKKYSKRCNYIINLLKEKDGYYNIYKGNRVSDGSHNSKTYLIHGLT-- 587
Query: 773 PAFESVDDNSNIIDFK 788
F D++ D K
Sbjct: 588 --FLDNTDSNPFEDIK 601
>gi|15920509|ref|NP_376178.1| hypothetical protein ST0314 [Sulfolobus tokodaii str. 7]
gi|15621292|dbj|BAB65287.1| 862aa long hypothetical protein [Sulfolobus tokodaii str. 7]
Length = 862
Score = 168 bits (426), Expect = 3e-39, Method: Composition-based stats.
Identities = 58/327 (17%), Positives = 114/327 (34%), Gaps = 25/327 (7%)
Query: 466 SQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF 525
+ L+ + + + ++ + +G L + + + G G +GKST +NL+
Sbjct: 500 CPKSLETFKSWVDDKWILLF--EVIGYTLYPRYDFNKAVLLVGNGSNGKSTFLNLLLKIL 557
Query: 526 GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGD 585
G V I+ + I L I SE N K++TG D
Sbjct: 558 GKNNVSAVPLKRIIDGDKFAS-------IELYHKLANISSELFAFKITNTDTFKKLTGED 610
Query: 586 CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQ 645
+ + + + + N+ V++ +WRR++VI F F +
Sbjct: 611 YIEGQKKFRDPIYFINYA-KLINSTNELPVVKDQTYGFWRRWLVIEFPHQFDPDPTFFDR 669
Query: 646 KLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE 705
+ I + D + KE+ + +DT A+I D + G+
Sbjct: 670 TFSKDEIEGIITVSILAFARVIQQ-KKFDFEDSSADIKEKWERASDTVYAFIKDLIESGK 728
Query: 706 --------NLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIE 757
NL+ L Y+E+ + ++K T T L+ + I +++
Sbjct: 729 VEYDPKNGNLFVSKKKLYSMYTEWCNEN---EKKPEPQSTFTKRLESR---FRIVKQRKR 782
Query: 758 KEWKSKRIIKGLKLKPAFESVDDNSNI 784
+ G+KLK +D+ +
Sbjct: 783 IGGERDWCYVGIKLKEDSTGGNDSVGV 809
>gi|10954590|ref|NP_052184.1| helicase-like protein [Sulfolobus islandicus]
gi|1930088|gb|AAB51531.1| helicase-like protein [Sulfolobus islandicus]
Length = 979
Score = 167 bits (424), Expect = 5e-39, Method: Composition-based stats.
Identities = 90/544 (16%), Positives = 173/544 (31%), Gaps = 63/544 (11%)
Query: 261 DEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYK 320
D + F KWD + + + F + + K L + +
Sbjct: 321 DSKVFAPKWDRYFLHTLMKAWNEVKPFLQIIKNAKNKKTKELKQE-----LAEVLSQYII 375
Query: 321 KGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNS 380
+ + + T K + ++ W+ I I L + E +++
Sbjct: 376 RKYHIVTFIQKHSNGESIIGIFRWN-RKKGIYEPIDETLKKIIRHEIMRVIETFPKSEDE 434
Query: 381 KSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSD----LLDSSSR-FLGEQDGI 435
KSP F+ + + V + + + + + + I + S +
Sbjct: 435 KSPMFYEVRNELVKLVYDEIRDLTLTEYDDDNTPLRIAFENCTLEWTSDKFKLIPA---- 490
Query: 436 LDLETGQKVKPTKELYI-TKS-----TGTPFVEGEP-------SQEFLDLVSGYFESEEV 482
D T + Y+ K TP+ E + L+ + + V
Sbjct: 491 -DKRT---EEHYAFHYVPHKIRVEVFNNTPYQVPELEELARKLCPKSLNAFKQWVGEKWV 546
Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542
+ +G L K + + G SGKST + L+K G Q ++ ++
Sbjct: 547 TLF--EIIGYTLYPATKFKLAFMLLGPRDSGKSTFLQLLKRILGKQNTVSIRLRELFDPN 604
Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602
L + + +ET E + + K +TGGD +T+ + + + +P
Sbjct: 605 NRFVAGF------LFHKLVNLTAETKEYTIEDIDRFKTLTGGDQITSDVKFKGPITFTPY 658
Query: 603 SFTPFIVPNKHLFVRN-PDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLK 661
+ I NK +R+ D A+WRR+++I F N D F Q + +
Sbjct: 659 A-KLIIASNKLPDIRDKNDTAFWRRWLIIEFPNQFPNDDNWFRQTFTEEEIEGILTVSIL 717
Query: 662 GVKAYISKGL--DVDIPEVCLKAKEEERQGTDTYQAWIDDC--------CDIGENLWEES 711
+S+G PE D+ +++ +LW
Sbjct: 718 AFARVMSRGQFDYQQTPEEVRDL---WLYNIDSVWSFVRTYEKKGFITVDPRNADLWVPR 774
Query: 712 HSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSK----RIIK 767
L K Y +Y +S +T L K F ++ K+ K R
Sbjct: 775 IELYKLYKDYCMDNG---FPGVSLKTFANKL-NKYFGITSMKKYFGKDPNGKEIRRRCFV 830
Query: 768 GLKL 771
G+ +
Sbjct: 831 GITI 834
>gi|324117000|gb|EGC10912.1| phage/plasmid primase [Escherichia coli E1167]
Length = 590
Score = 167 bits (424), Expect = 5e-39, Method: Composition-based stats.
Identities = 69/399 (17%), Positives = 132/399 (33%), Gaps = 59/399 (14%)
Query: 397 EENSKAKSTAQSLEAGSIFSITSDLL-DSSSRFLGEQDGILDLETGQKVKPTKELYITKS 455
E+N S A I+ ++ + S + ++G+ D+ +G+ + + E +IT
Sbjct: 195 EKNKTNFSKRAISNAVDALKISVPVMREQSDTIIPFENGVYDITSGRFLPHSPEHWITSH 254
Query: 456 TGTPFVEGEPSQEFLDLVSGYFE--------SEEVMDYFTRCVGMALLGGNKAQRFIHIR 507
G + P + D + M + M L Q FI
Sbjct: 255 NGIYYTPPAPGENIHDHAPHFHRWLSHAAGYDSSKMKRICAALFMVLANRYDWQLFIEAT 314
Query: 508 GVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISET 567
G GGSGKS + + G Q ++ + E +L+G ++I+ +
Sbjct: 315 GEGGSGKSMFTQIARMLAGEQNTAGSDMKALDDAGGRE---------QLVGKSLIILPDQ 365
Query: 568 NENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV-RNPDDAWWRR 626
+ IK +TGGD + Y Y+ S ++ N V RR
Sbjct: 366 PKYFG-EGNGIKAITGGDPLQINPKYEKRYTTVLRS--VVLITNNKPMVFTERAGGISRR 422
Query: 627 YIVIPFDKPIAN--RDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKE 684
++ F+ PIA +D +K+ + + ++ + + PE
Sbjct: 423 RVIFQFNNPIAEENKDTCLPKKIAAEIPVIVRRLLV-----------NFSDPEKARTLLL 471
Query: 685 EERQGT---------DTYQAWIDDCCDIGENL-----------WEESHSLAKSYSEYREQ 724
E+R G D A+ + ++GE + L +Y Y +
Sbjct: 472 EQRDGEEAMEVKRHTDPLYAFCNHIVELGEAVGMFMGNLNIYPRAPRIYLYHAYLAYMDA 531
Query: 725 ELNYDRKRISTRTVTLNLKQ--KGFIGGIKREKIEKEWK 761
K ++ + + K + K+ K +
Sbjct: 532 YG--FDKPLNLTNFGKDFPKVMKEYGAEYKKAKTNVGMR 568
>gi|168052394|ref|XP_001778635.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669953|gb|EDQ56530.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 456
Score = 167 bits (423), Expect = 6e-39, Method: Composition-based stats.
Identities = 85/379 (22%), Positives = 145/379 (38%), Gaps = 64/379 (16%)
Query: 334 YKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEE-PEDNNKNSKSPRFWFNTDYR 392
Y D N W+L K + + LV M + D+ E E +K F ++D R
Sbjct: 124 YFFDTRN---WALKSSK-ASMMKEILVGMYRFIADVCESYIETIKPATKIIDFIQSSDNR 179
Query: 393 RQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYI 452
R+ + + +LL+S +G + G+ D + + + YI
Sbjct: 180 RKIMYTCAGMLYKEDF----------EELLNSRRDMIGMKGGVYDFTEDRFRRMEPDDYI 229
Query: 453 TKSTGTPFVE----GEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRG 508
T ST PFV E + E LDL+S F
Sbjct: 230 TLSTRIPFVPLDYNSEATNEVLDLLSKIFS--------------------------IWSV 263
Query: 509 VGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN 568
G +GK+ +++L++ AFG+ Y I S +M R ++ A P L L I ++ E +
Sbjct: 264 FGDNGKTVMVSLVERAFGD-YAIKMLTSLLMGKRV-QSSAATPKLAMLKRRLIALVQEPD 321
Query: 569 ENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYI 628
E D++N +K++TG D + R Y + P + ++ N+ + D A W R
Sbjct: 322 EGDKLNLGVMKELTGNDSLYIRELYEEG-AVIPQTAKFVLIANRIPQMSTFDKAVWSRVR 380
Query: 629 VIPFDKPIAN-------------RDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDI 675
V+PF + +D +F+ K+ + ++ K Y++ GL +
Sbjct: 381 VMPFISTFVDKIEPSHDPLTTHLKDINFSNKIPL-LAHVFMRLVIEEYKQYLTYGL--EE 437
Query: 676 PEVCLKAKEEERQGTDTYQ 694
P E R D +
Sbjct: 438 PNEGKDCTETIRVSNDIFG 456
>gi|215488939|ref|YP_002331370.1| predicted DNA primase [Escherichia coli O127:H6 str. E2348/69]
gi|215267011|emb|CAS11456.1| predicted DNA primase [Escherichia coli O127:H6 str. E2348/69]
Length = 804
Score = 167 bits (423), Expect = 6e-39, Method: Composition-based stats.
Identities = 85/603 (14%), Positives = 174/603 (28%), Gaps = 103/603 (17%)
Query: 199 NNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVV--MAVHHETRGSSKGKEIARRWSKQ 256
+ + ++ + L + WI +A T +++ WS
Sbjct: 241 SAGPDNFLIADLRSALWFPSMLQKAWDNGAWIEQGYRLASLKGTDFEDDARQLWVEWSLT 300
Query: 257 GSTYDEEN-----FNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAY 311
+ + +W+ ++ A + + GK K + + +
Sbjct: 301 AADGWPDEELDEVAAQRWNGLAPDKTSYKAIFTDAQAQGWNNPGKWRAKAAYIEKMAPST 360
Query: 312 NKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSE 371
+ + Y G+ AD Y +W D A + L + +D
Sbjct: 361 RGELLAQYY-GNVCLKADGNMVYHYTGQ---VWEHIAD---AELRRQLSQIFKDNGVPFT 413
Query: 372 EPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGE 431
E ++EA + + ++ +G
Sbjct: 414 PYE------------------------------VKSAIEAMGMLL--PLMGETPRNLIGF 441
Query: 432 QDGILDLETGQKVKPTKELYITKSTGTPFVEG-------EPSQEFLDLVSGYFESE-EVM 483
+G+ DLE + + ++T G + + + F + + + M
Sbjct: 442 ANGVYDLEAQRFRPHCPDDWLTSHNGVEYTQPVKGETLKNNAPNFWRWLHHSAGGDFDKM 501
Query: 484 DYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP 543
+ + M L Q FI + G GGSGKS + + G + + D+ R
Sbjct: 502 ERIKAALYMVLANRYDWQLFIEVTGAGGSGKSVFTGIARMLTGELHATSGTMEDMDTARE 561
Query: 544 PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPAS 603
+G ++ + + + IK +TGGD + + + +
Sbjct: 562 R---------ASFVGKSLITLPDQATYTG-SGPGIKAITGGDVVRIDPKHEKPFHTVIRA 611
Query: 604 FTPFIVPNKHL-FVRNPDDAWWRRYIVIPFDK--PIANRDASFAQKLETKYTLEAKKWFL 660
I N RR ++ PF+ P A RD K++ + + +
Sbjct: 612 --VVIATNNEPMRFTERQGGISRRRVIFPFNHEVPEAERDPHLLDKIKAELPV-----IV 664
Query: 661 KGVKAYISKGLDVDIPEVCLKAKEEER---------QGTDTYQAWID--------DCCDI 703
+G+ +D + P +R D + + +
Sbjct: 665 RGLL------IDFEQPGKAKSLLIAQRDSAEALQVKNDNDPMYGFCSYLLGLPNPEGMYM 718
Query: 704 GEN--LWEESHSLAKSYSEYREQELNYDRKRISTR---TVTLNLKQKGFIGGIKREKIEK 758
G+ E L +Y Y + Y R + + LK G K+ K K
Sbjct: 719 GDGRMAREPRIYLYHAYLAY-LEAYGYQRTPTLPKFSGDLRDTLKAFGITLDSKKSKKGK 777
Query: 759 EWK 761
+
Sbjct: 778 RYN 780
>gi|312901365|ref|ZP_07760645.1| phage/plasmid primase, P4 family protein [Enterococcus faecalis
TX0470]
gi|311291528|gb|EFQ70084.1| phage/plasmid primase, P4 family protein [Enterococcus faecalis
TX0470]
Length = 619
Score = 167 bits (423), Expect = 7e-39, Method: Composition-based stats.
Identities = 63/432 (14%), Positives = 144/432 (33%), Gaps = 31/432 (7%)
Query: 340 NVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEEN 399
N +++ + +++ + + + + + K +W N + +
Sbjct: 204 NSVNEKEIREQLYLDPKDMIITSEALAKEFQVKFFNGSIFHKEDNYWINDQNKLLRKIDK 263
Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILD--LETGQKVKPTKELYITKSTG 457
A+ + + I +L++++ + ++ D L+ + + + +
Sbjct: 264 RIKLLPAKWKQILDLLKIKGELIEAADFPIQFRN---DFMLDGAEIIPMSTREFTPFFLD 320
Query: 458 TPFVEGEPSQEFLDLVSGYFESE-EVMDYFTRCVGMALLGGNKAQRFIHIRGV-GGSGKS 515
+ + + ++ + ++ +G L+ + + G G +GKS
Sbjct: 321 VDYDPDAYDKTVDEFLNFLVSDKKDLRIIVEELLGHILMTAGFPHKVFFLVGSSGANGKS 380
Query: 516 TLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA 575
T + ++ G+ +N S++ L G + I + + +
Sbjct: 381 TFLEMLNSFIGDL-GLNLALEQFNDQ---------TSVMELEGKLVNIGDDIDAGYMEKS 430
Query: 576 AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP 635
K + G+ + R Y Y + T N+ ++ RR ++IP +
Sbjct: 431 MNFKTLASGNTIMVRPIYSKPY-KLKNKATLIFTANEMPTFKDKSGGIARRVVIIPCENK 489
Query: 636 IANRDASFAQKLET-KYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQ 694
+ D +KL + LK ++ I+ G + E K EE +D+
Sbjct: 490 VKKADPKIDEKLSSDNAKSYLLNLALKAMERIINNGGQLSSSETVAKVTEEYFVESDSIL 549
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
+I C I EN+ + Y EY + K + T LK G+ E
Sbjct: 550 TFIH-QCGIDENMTTKG-----VYDEYLKTCEESGSKPYTQTKFTQRLKSLGY------E 597
Query: 755 KIEKEWKSKRII 766
K + KR
Sbjct: 598 KERRMIMGKRYF 609
>gi|307591304|ref|YP_003900103.1| phage/plasmid primase, P4 family [Cyanothece sp. PCC 7822]
gi|306986158|gb|ADN18037.1| phage/plasmid primase, P4 family [Cyanothece sp. PCC 7822]
Length = 999
Score = 167 bits (423), Expect = 7e-39, Method: Composition-based stats.
Identities = 80/557 (14%), Positives = 173/557 (31%), Gaps = 73/557 (13%)
Query: 258 STYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFS 317
+ Y E + W+T D R++ Y + LIP + + + +
Sbjct: 417 AHYKLEAETFFWNTIRGHLGEDAEAFRASLEMK-YGNSSLIPNDEKDNLGLPVWAASNIA 475
Query: 318 IYKKGHFL----YTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEP 373
++ + + + WY+ + +WS KE + + +
Sbjct: 476 VWLAERYRCVLAWNTQIEEWYRYAAQSEGVWS-----------------KEPKYYIWQII 518
Query: 374 EDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQD 433
+ R + +R N L+A + D + L +
Sbjct: 519 ITELETLADIRQQLDEKNQRPTYSSN-FVTGIETLLKAH----LAVRGWDETEGLLPFNN 573
Query: 434 GILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEE-VMDYFTRCVGM 492
G+ +LETG+ + +T + + +D + + +E ++ + +
Sbjct: 574 GVKNLETGEFSPHSPGFRLTWCLPYNYDPLATCEPIVDWLKVMTKGDEQIIQFIRAHLNA 633
Query: 493 ALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS 552
+ Q ++ + G GG+GK T+ L G++ I+ ++ +NR
Sbjct: 634 VVTSRVDIQSYLELIGPGGTGKGTITRLATALIGDRNTISTTLRNLEENR--------FD 685
Query: 553 LIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612
RL +R+V+I++ + + + +K +TG D + + I N+
Sbjct: 686 TARLYNARLVVITDAEK-WGGDVSVLKALTGQDKLRYEEKFKQPLDGFYFRGRVMICANE 744
Query: 613 HLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLD 672
+ + RR + I + L K +L G+ ++ +
Sbjct: 745 PIQSADYTSGLERRRQTVYMTNKIPLKSQKTLISLNNKGVTGDFVPYLPGLMNWVLS-MS 803
Query: 673 VDIPEVCLKAK-------EEERQ----GTDTYQAWIDDCCDIGENLWEESHS-------- 713
E +K + + T+ W+D I N
Sbjct: 804 PSDTEQIIKETPTLHHQFQYYKAQILTETNPIADWMDVSVVIRNNYRSPIGVANRDKSSD 863
Query: 714 -----------LAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKS 762
L +Y+++ K +S R L + + +
Sbjct: 864 SPNWFLNTDRWLYANYAQFCHATGA---KAVSVRRFVNLLHDLSLNQ-LNLNVTKGRDRY 919
Query: 763 KRIIKGLKLKPAFESVD 779
+ GLKL+ E +D
Sbjct: 920 GAYLLGLKLRDD-EDLD 935
>gi|283768124|ref|ZP_06341039.1| primase superantigen-encoding pathogenicity islands SaPI
[Staphylococcus aureus subsp. aureus H19]
gi|283462003|gb|EFC09087.1| primase superantigen-encoding pathogenicity islands SaPI
[Staphylococcus aureus subsp. aureus H19]
Length = 787
Score = 166 bits (420), Expect = 1e-38, Method: Composition-based stats.
Identities = 55/332 (16%), Positives = 110/332 (33%), Gaps = 33/332 (9%)
Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE-----FLDLVSGY-FES 479
+ ++G+ + +T Q T + T T + F +
Sbjct: 427 PYLIPVKNGVFNRKTKQLEAFTPDYVFTTKISTKYNPNVVRPNLNGWDFDHWLYEIACAD 486
Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539
+E++ + ++ G ++ I G G +GK T LI G + V + + ++
Sbjct: 487 KEIVTLLWEVINDSMNGNYTRKKAIFFVGDGNNGKGTFQELISNLVGYKNVASLKVNEF- 545
Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEI-NAAKIKQMTGGDCMTARLNYGNTYS 598
L L G +VI + I +++ K + GD + + Y
Sbjct: 546 --------DHEFKLSVLEGKAVVIGDDVPVGINIEDSSNFKSVVTGDSVLVNVKNKQPYR 597
Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQK-LETKYTLEA 655
+ T N + RR +++PF+ +N + +K L+ + LE
Sbjct: 598 -TEFRCTVIQSTNGMPKFTDKTGGTNRRLLIVPFNADFNDSNENVDIKEKYLKDNHVLE- 655
Query: 656 KKWFLKGVKAYISKGL---DVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESH 712
Y + L IP+V K E +Q D+ + + D
Sbjct: 656 -------YVLYKAINLEFDRFTIPQVSKKMLEIYKQDNDSVYDFKIEEFDQWNIQKVPKK 708
Query: 713 SLAKSYSEYREQELNYDRKRISTRTVTLNLKQ 744
+ Y + E+ ++S RT ++
Sbjct: 709 VVYYRYRAFCEENRYMG--KMSDRTFYRRFEK 738
>gi|331659981|ref|ZP_08360919.1| primase [Escherichia coli TA206]
gi|315296988|gb|EFU56268.1| nucleoside triphosphatase, D5 family [Escherichia coli MS 16-3]
gi|331053196|gb|EGI25229.1| primase [Escherichia coli TA206]
Length = 804
Score = 166 bits (420), Expect = 2e-38, Method: Composition-based stats.
Identities = 83/603 (13%), Positives = 166/603 (27%), Gaps = 103/603 (17%)
Query: 199 NNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVV--MAVHHETRGSSKGKEIARRWSKQ 256
+ + ++ + L + WI +A T +++ WS
Sbjct: 241 SAGPDNFLIADLRSALWFPSMLQKAWDNGAWIEQGYRLASLKGTDFEDDARQLWVEWSLT 300
Query: 257 GSTYDEEN-----FNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAY 311
+ + +WD ++ A + + K + + +
Sbjct: 301 AADGWPDEELDEVAAQRWDGLAPDKTSYKAIFTDAQAQGWNNPSTWRAKAAYIEKMAPST 360
Query: 312 NKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSE 371
+ + Y G+ AD Y W D +E
Sbjct: 361 RGELLAQYY-GNVCLKADGNMVYHYTGQG---WEHIAD--------------------AE 396
Query: 372 EPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGE 431
+ K F + +E + T +G
Sbjct: 397 LRRQLSHIFKDNGVPFTPYEVKSAIEAMGMLL---------PLMGETPR------NLIGF 441
Query: 432 QDGILDLETGQKVKPTKELYITKSTGTPFVEG-------EPSQEFLDLVSGYFESE-EVM 483
+G+ DLE + + ++T G + + + F + + + M
Sbjct: 442 ANGVYDLEAQRFRPHCPDDWLTSHNGVEYTQPVKGETLKNNAPNFWRWLHHSAGGDFDKM 501
Query: 484 DYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP 543
+ + M L Q FI + G GGSGKS + + G + + D+ R
Sbjct: 502 ERIKAALYMVLANRYDWQLFIEVTGAGGSGKSVFTGIARMLTGELHATSGTMEDMDTARE 561
Query: 544 PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPAS 603
+G ++ + + + IK +TGGD + + + +
Sbjct: 562 R---------ASFVGKSLITLPDQATYTG-SGPGIKAITGGDVVRIDPKHEKPFHTVIRA 611
Query: 604 FTPFIVPNKHL-FVRNPDDAWWRRYIVIPFDK--PIANRDASFAQKLETKYTLEAKKWFL 660
I N RR ++ PF+ P A RD K++ + + +
Sbjct: 612 --VVIATNNEPMRFTERQGGISRRRVIFPFNHEVPEAERDPHLLDKIKAELPV-----IV 664
Query: 661 KGVKAYISKGLDVDIPEVCLKAKEEER---------QGTDTYQAWID--------DCCDI 703
+G+ +D + P +R D + + +
Sbjct: 665 RGLL------IDFEQPGKAKSLLIAQRDSAEALQVKNDNDPMYGFCSYLLGLPNPEGMYM 718
Query: 704 GEN--LWEESHSLAKSYSEYREQELNYDRKRISTR---TVTLNLKQKGFIGGIKREKIEK 758
G+ E L +Y Y + Y R + + LK G K+ K K
Sbjct: 719 GDGRMAREPRIYLYHAYLAY-LEAYGYQRTPTLPKFSGDLRDTLKAFGITLDSKKSKKGK 777
Query: 759 EWK 761
+
Sbjct: 778 RYN 780
>gi|160944862|ref|ZP_02092089.1| hypothetical protein FAEPRAM212_02378 [Faecalibacterium prausnitzii
M21/2]
gi|158444046|gb|EDP21050.1| hypothetical protein FAEPRAM212_02378 [Faecalibacterium prausnitzii
M21/2]
Length = 527
Score = 166 bits (419), Expect = 2e-38, Method: Composition-based stats.
Identities = 72/360 (20%), Positives = 143/360 (39%), Gaps = 29/360 (8%)
Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKS-TGTPFVEGEPSQEFLDLVSGYFES-EE 481
+ ++GIL L + + IT + + E F + + E E+
Sbjct: 187 KDKPYCPLKNGILYLNKMKLKHHS-SKRITFTVLDACYDEDAECPVFDEFLDTITEGRED 245
Query: 482 VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQN 541
+ + F +G L+ + + F + SGKS L N I+ + V N ++
Sbjct: 246 LKERFMMALGYLLIEPSSGKYFFVMGYAPNSGKSILGNTIQKLYPENSVSNLSLGELGGK 305
Query: 542 RPPEAGKANPSLIRLMGSRIVIISETNENDEINA---AKIKQMTGGDCMTARLNYGNTYS 598
E+ L+ SRI I + + + +NA +K+K++TGGD + + +
Sbjct: 306 FETES---------LLYSRINISLDLPQ-EVLNASAVSKLKRITGGDSIEIQRKNQRSLK 355
Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAK 656
+ N L + + D A+ R I +PF K I RD A+KL K
Sbjct: 356 LD-HNMKFLFATNFLLRIDSNDPAFLDRIIFLPFMKSIPKDERDPDLAKKLW-KERDAIV 413
Query: 657 KWFLKGVKAYISKGLDVDI-PEV-CLKAKEEERQGTDTYQAWIDDCCDIGE-NLWEESHS 713
L+ + + +G P+V C++ + + D + ++++ C++G+ N + +
Sbjct: 414 TKALQYARKLMKQGWQFPPIPDVDCMRGIQR-KNSMDYLKEFLENHCEMGDYNYFTATSD 472
Query: 714 LAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773
L ++Y ++ S ++Q G G R+++ G++L+P
Sbjct: 473 LRRTYEACCDENGTC---PCSATAFNKYMEQAG--GVRDRKRLTASENPVWGFYGIRLRP 527
>gi|254520503|ref|ZP_05132559.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA]
gi|226914252|gb|EEH99453.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA]
Length = 534
Score = 165 bits (418), Expect = 3e-38, Method: Composition-based stats.
Identities = 55/401 (13%), Positives = 131/401 (32%), Gaps = 29/401 (7%)
Query: 341 VYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENS 400
YI + +++ +N + + + + D +F + + N +S
Sbjct: 106 TYIANKIINENKFICINEEIYLYLENLGYYKRLSDQEIRVFVYKFISLENCKHFN---SS 162
Query: 401 KAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPF 460
+S ++ + + + + G+ D+ + + + + +
Sbjct: 163 DIESIIYFIKISDKIQKNMNDIKRHRNLVNTKSGVYDIRSKKILPHDHKYMFFSVVNAEY 222
Query: 461 V-----EGEPSQEFLDLVSGY-FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGK 514
+ + F ++ EE+ G L N+ ++F + G GG+GK
Sbjct: 223 NIQNYNDNFYNSRFYKFLNEITLGDEELKQRLKEITGYCLCNANQMRQFYILIGDGGNGK 282
Query: 515 STLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEIN 574
S +NL+ G + N + + + + + L + I SE ++ +
Sbjct: 283 SIFLNLLMTLVGEENTSNIQLNQLSDQKY---------IAELANKMVNIGSELSDIKLGD 333
Query: 575 AAKIKQMTG-GDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDD----AWWRRY-- 627
+ IK + D + R Y +S N + N + A++ R
Sbjct: 334 TSAIKSLVNDTDKVICRPLYKQPFSFVNYC-KLIFATNNLPELNNKNYKNNTAFFNRAII 392
Query: 628 IVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEER 687
I P+ +D + +L + L W L+G++ ++ E+ + E R
Sbjct: 393 IPFNNIIPVEKQDKNLNNQLRREIDL-VLVWALEGLEKVRKNKWNLSECEISTRYSLEYR 451
Query: 688 QGTDTYQAWIDDCCDIG--ENLWEESHSLAKSYSEYREQEL 726
+ ++ + I + L + +E
Sbjct: 452 DSQSYIERFLKERIRIDIENKNYMFKSDLKDELERFCIEEG 492
>gi|219853114|ref|YP_002467546.1| P4 family phage/plasmid primase [Methanosphaerula palustris E1-9c]
gi|219547373|gb|ACL17823.1| phage/plasmid primase, P4 family [Methanosphaerula palustris E1-9c]
Length = 507
Score = 165 bits (418), Expect = 3e-38, Method: Composition-based stats.
Identities = 69/457 (15%), Positives = 147/457 (32%), Gaps = 27/457 (5%)
Query: 334 YKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR 393
Y+ D N + I +F +DV + ++ + + D
Sbjct: 71 YQPDPNKSTKKPNLDTIMDYVIKHFAAITFKDVIYIYDQKTGTYRPDEGEINGLIMDLL- 129
Query: 394 QNVEENSKAKSTAQSLEAGSIFS----ITSDLLDSSSRFLGEQDGILDLETGQKVKPTKE 449
+ + K E + IT + + + ++G+LD T V +
Sbjct: 130 HSEGYTNNNKIAELFREIQTRIKARNIITKYPFNLVANLIPCKNGVLDPLTQTIVPRSPA 189
Query: 450 LYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGV 509
T ++ + ++ + L+ ++ + ++
Sbjct: 190 YGFTYMINAEYLPEVDCIFIKKYLRTLVAPKDY-EMLLNLGASCLIRESQKKMYLIYNRS 248
Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569
G +GK+TL+NL+ G + + D + + + G I +
Sbjct: 249 GNNGKTTLLNLLTDMLGKENTSSLSLQDFDKGGFR--------VAEIDGKIANISGDLPT 300
Query: 570 NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIV 629
+ + IKQ+TG D + YG Y E N+ + DA++ R ++
Sbjct: 301 TRISDTSVIKQLTGEDFIMIERKYGQPY-EIQNRAILIFGANEPPVFNDTTDAFYSRMVM 359
Query: 630 IPFDKPIANRDASFAQKLETKYTLEA-KKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQ 688
I F D F +KL+ L A K F+ + + G+ D K + +
Sbjct: 360 IEFPNQF-KVDLDFNKKLKEPENLSALLKVFVDHIPTLLKSGITTDT----EAMKNQYLR 414
Query: 689 GTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFI 748
+D+ + +D + + + Y +Y + ++ + + F
Sbjct: 415 ESDSVYRFFEDNLVKDQFGEIDLDLVYDVYIDYCTVNKVKKVGKK---AFSVRMSEH-FD 470
Query: 749 GGIKREKIEKEWKSKRIIKGLKLKPAFESVDDNSNII 785
+R + +KG+K K A + D +
Sbjct: 471 VSTRRRGST--GEQIAYLKGVKFKSAKQQTFDQIEMT 505
>gi|268589891|ref|ZP_06124112.1| bacteriophage P4 DNA primase [Providencia rettgeri DSM 1131]
gi|291314769|gb|EFE55222.1| bacteriophage P4 DNA primase [Providencia rettgeri DSM 1131]
Length = 800
Score = 165 bits (418), Expect = 3e-38, Method: Composition-based stats.
Identities = 67/471 (14%), Positives = 157/471 (33%), Gaps = 77/471 (16%)
Query: 346 LTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKST 405
L +++ +N + EP +++ S+ +F + ++ +
Sbjct: 365 LLIERYGQLAVNTESLTVYTYSGVMWEPIKDSELSREMADFFIENETHFSMRRITGVIDV 424
Query: 406 AQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP 465
+ I + +S +G +G+L+ +T + ++ G + E
Sbjct: 425 LKV--------IAEPMGESDIDLIGFTNGVLNTKTHEFRPHNANDWLLHQNGITYTEPAA 476
Query: 466 -------SQEFLDLVSGYFESEEV-MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTL 517
+ F +S +E + M + Q FI GVGGSGKS
Sbjct: 477 GENLKDNAPNFTAWLSHVSGGDEAKARRIKAGLYMVFANRHDWQLFIEATGVGGSGKSVF 536
Query: 518 MNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK 577
++ + G + + + R + +G +++++ + + + A
Sbjct: 537 AHIAELLAGKHNTSSGDLKALDDARGR---------AQFVGKKLILLPDQPKYVG-DGAG 586
Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637
+K +TGGD + Y +S S F+ N+ + + RR ++ F++ ++
Sbjct: 587 LKAITGGDPVGIDPKYEKQFSMVMKS-VVFMTGNRPMQFTERSNGVGRRRVIFHFNETVS 645
Query: 638 N--RDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEER-------- 687
+D + +K++ + + + + + P+ K E+R
Sbjct: 646 EDKKDKNLPEKIQAEIPVII--------RDLLRE---FPNPDTANKLLIEQRGSGEAVDV 694
Query: 688 -QGTDTYQAWID--------DCCDIGENLW---EESHSLAKSYSEYREQELNYDRKRIST 735
+ TD+ + + +G L +Y Y + N R ++
Sbjct: 695 KRETDSLIDFCAYLVALERVEGMFMGNANISPPAPRKYLYHAYMAYMQGNGN--RNPLTL 752
Query: 736 RTVTL----NLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDNS 782
T LK+ G K++ R +G++ ++
Sbjct: 753 TTFGRSIDGALKELG-----------KKYIKDRFTQGVRTNLELNELEAED 792
>gi|186684989|ref|YP_001868185.1| helicase superfamily protein [Nostoc punctiforme PCC 73102]
gi|186467441|gb|ACC83242.1| Helicase superfamily 3 [Nostoc punctiforme PCC 73102]
Length = 715
Score = 165 bits (418), Expect = 3e-38, Method: Composition-based stats.
Identities = 71/373 (19%), Positives = 135/373 (36%), Gaps = 47/373 (12%)
Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGE-PSQEFLDLVSG 475
+ +D ++ S+ L ++G+LDL+T + + + Y E +
Sbjct: 356 LCNDFVEPSNHLLPFKNGVLDLKTNKLILHSPNHYFRNIIDREHDHKATDWGEIEKWMDF 415
Query: 476 YFESEEVMDYFTR-CVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
FE+ + L G K RF I G+GG+GKST M L G ++ +
Sbjct: 416 VFENNPSQKHLLICWYAAVLRGMWKLHRFALIIGLGGTGKSTAMKLAIALIGKRFSHSLT 475
Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
+ + N+ + R+V I++ + N +K +TGGD + Y
Sbjct: 476 ITALNNNQ--------FQTANIYDKRLVCINDADRY-RGNLEILKNITGGDEINIEQKYE 526
Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLE 654
+S ++ + D RR I+ FD+ + N D F +KL +
Sbjct: 527 RAFSAVYKGM--VMITANNFVFSAHDSGLDRRMILFKFDRQLPNIDTIFLEKLTAQ---- 580
Query: 655 AKKWFLKGVKAYISKGLDVDIPEVCLKAKEEE-----RQGTDT--------YQAWIDDCC 701
+ G Y+ L + PE+ + R+ D W+++
Sbjct: 581 -----ISGFTNYL---LSIPEPEIVHTLLYKVDESGTRKQNDVEALLQTNSLADWLNNSY 632
Query: 702 DIGENLWEESH----SLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIE 757
+ ++ + Y +Y K S + + + + G G +++ KI
Sbjct: 633 VYDPDNQVPIGVDKYNINQLYGDYCIYCHKTRSKPCSNKEFSPEIIRLG-RGKLEKVKIR 691
Query: 758 KEWKSKRIIKGLK 770
S +I+GL+
Sbjct: 692 ----SGFMIRGLR 700
>gi|161615642|ref|YP_001589607.1| hypothetical protein SPAB_03426 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|161365006|gb|ABX68774.1| hypothetical protein SPAB_03426 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
Length = 777
Score = 165 bits (417), Expect = 3e-38, Method: Composition-based stats.
Identities = 64/370 (17%), Positives = 116/370 (31%), Gaps = 58/370 (15%)
Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
R +G ++G+LD TG K ++ F + F +
Sbjct: 411 RRLIGFRNGVLDTATGTFSPHHKSHWLRTLCDVDFTPPVEGETLETHAPNFWRWLDRAAG 470
Query: 479 S-EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
E D + M L Q F+ + G GGSGKS L + G +A+
Sbjct: 471 GRPEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATLLAGEDNATSADIDT 530
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
+ R L+G ++ + + E + A +K +TGGD ++ Y N Y
Sbjct: 531 LEDPRKR---------ASLIGFSLIRLPD-QEKWSGDGAGLKAITGGDAVSVDPKYQNPY 580
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655
S + V N + + RR ++I F + IA RD K+ + +
Sbjct: 581 STHIPA-VILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPDERDPQLKDKIARELAVIV 639
Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWID--DCCDIG 704
++ P + + ++ D + +
Sbjct: 640 RQLM-----------QKFSDPMAARTLLQSQQNSDEALSIKRDADPTFDFCGYLEMLPQT 688
Query: 705 ENLWEESHS---------LAKSYSEYREQELNYDRKRISTRTVT----LNLKQKGFIGGI 751
++ + S L +Y Y E R +S + + LK+ G
Sbjct: 689 NGMFMGNASIVPRNYRKYLYHAYLAYMEANG--YRNVLSLKMFGLGLPMMLKEYGLNYEK 746
Query: 752 KREKIEKEWK 761
+ K +
Sbjct: 747 RHTKQGIQTN 756
>gi|283469703|emb|CAQ48914.1| putative primase [Staphylococcus aureus subsp. aureus ST398]
Length = 787
Score = 165 bits (417), Expect = 4e-38, Method: Composition-based stats.
Identities = 55/332 (16%), Positives = 110/332 (33%), Gaps = 33/332 (9%)
Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE-----FLDLVSGY-FES 479
+ ++G+ + +T Q T + T T + F +
Sbjct: 427 PYLIPVKNGVFNRKTKQLESFTPDYIFTTKISTKYNPNVVRPNLNGWDFDHWLYEIACAD 486
Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539
+E++ + ++ G ++ I G G +GK T LI G + V + + ++
Sbjct: 487 KEIVTLLWEVINDSMNGNYTRKKAIFFVGDGNNGKGTFQELISNLVGYKNVASLKVNEF- 545
Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEI-NAAKIKQMTGGDCMTARLNYGNTYS 598
L L G +VI + I +++ K + GD + + Y
Sbjct: 546 --------DHEFKLSVLEGKAVVIGDDVPVGINIEDSSNFKSVVTGDSVLVNVKNKQPYR 597
Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQK-LETKYTLEA 655
+ T N + RR +++PF+ +N + +K L+ + LE
Sbjct: 598 -TEFRCTVIQSTNGMPKFTDKTGETNRRLLIVPFNADFNDSNENVDIKEKYLKDNHVLE- 655
Query: 656 KKWFLKGVKAYISKGL---DVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESH 712
Y + L IP+V K E +Q D+ + + D
Sbjct: 656 -------YVLYKAINLEFDRFTIPQVSKKMLEIYKQDNDSVYDFKIEEFDQWNIQKVPKK 708
Query: 713 SLAKSYSEYREQELNYDRKRISTRTVTLNLKQ 744
+ Y + E+ ++S RT ++
Sbjct: 709 VVYYRYRAFCEENGYMG--KMSDRTFYRRFEK 738
>gi|218291388|ref|ZP_03495331.1| ATPase-like protein [Alicyclobacillus acidocaldarius LAA1]
gi|218238743|gb|EED05959.1| ATPase-like protein [Alicyclobacillus acidocaldarius LAA1]
Length = 1039
Score = 164 bits (414), Expect = 7e-38, Method: Composition-based stats.
Identities = 100/660 (15%), Positives = 206/660 (31%), Gaps = 81/660 (12%)
Query: 145 KKEYTWTTP--------PHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKT 196
K Y W+ P L V + FQ + P +++
Sbjct: 373 GKRYNWSETERKFRSSRPLAVLCSTFQELDPMSVCAACRHFQRGSSPATFVRRAYAAKLG 432
Query: 197 WTN--NNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWS 254
+ ++ + EE + + E E W+
Sbjct: 433 LPGLYGAPDEADGPKMDGLPTQTTEEALHVDGGTRVAAGAEDWVEAPEDVIVHEPV-AWT 491
Query: 255 KQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKA 314
+ S EE+ N W F R + Y + + LL R + K
Sbjct: 492 EDLSEAPEEDTN--WSERPFTNRTAREWARVKKSHFVYVDEEKGKEHLLLRRMA-TLIKK 548
Query: 315 MFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPE 374
F++ Y D +Y + A I +F++ E +
Sbjct: 549 DFNLQYFFQSCYYYDGT---------IYTTPTDDGEDEAVIRDFILEALETIKPTW---- 595
Query: 375 DNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDG 434
++ + + N+ + S+E+ + + ++ + +G
Sbjct: 596 ----------ATWSRAEEIKRMLINNVQRDRNHSVESIRVHEV----WNTEP-LVPFANG 640
Query: 435 ILDL-----ETGQKVKPTKELYITKSTGTPFVEGEPSQ-------------EFLDLVSGY 476
+LD+ + + I PF E + LD
Sbjct: 641 LLDMSDPFDHDWRVYDFSPRHRINWKLTIPFFENWNRTPKSWTLAMKDAEVDVLDFFRTT 700
Query: 477 FESEEVMDYFTRCVGMALLG-GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535
F +E +G L + + + G G +GKSTL+ ++ AFG Y +
Sbjct: 701 FPDDETRRSILEFLGYCLCRWDQSEECYAILYGPGQNGKSTLLGMLAKAFG-VYAVTESV 759
Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595
+ +NR A L + I I+ + + + +K G D + A +
Sbjct: 760 QSLERNRFASAC--------LTRAAIDIVPDMAGTGIEDTSFLKGWIGNDVVRAERKFKA 811
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
++ P + N+ ++P ++RR ++ P + + + ++L T L
Sbjct: 812 SFEFKPQT-KLIYGANELPPTKDPTHGYFRRILLYPMMERFKRQGPGWVERLRTPEALSY 870
Query: 656 KKWFLKGVKAY---ISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD-CCDIGENLWEES 711
+ G+ Y +G ++ + L+ K+ + D +A ID+ ++G++
Sbjct: 871 MCYL--GLLHYRQMRREGRNITESKEMLREKDYYWRANDVVKAAIDEGIIELGKDYIVPR 928
Query: 712 HSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771
L K+ Y ++ RK + L+ I+ + K + G++L
Sbjct: 929 DLLQKAMEIYAKETG---RKYPGAAKLLERLRNYA-PHKIEYSRPRLNGKPTHVWTGVRL 984
>gi|254303768|ref|ZP_04971126.1| possible replication protein [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
gi|148323960|gb|EDK89210.1| possible replication protein [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
Length = 681
Score = 164 bits (414), Expect = 7e-38, Method: Composition-based stats.
Identities = 71/446 (15%), Positives = 148/446 (33%), Gaps = 53/446 (11%)
Query: 319 YKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNK 378
K+ FLY D+ K + D I N+L S + ED +
Sbjct: 247 IKEDSFLYFTDSGK--LKVHTRKMAEKMINDYSIIKIDNYLFSYTGTYYKRC-MIEDIER 303
Query: 379 NSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDL 438
++ ++ +++ I + L ++ +GI +L
Sbjct: 304 AIFRLHKDITSNELKEVLKK------------IQLGTEIKKENL----SYIALNNGIFNL 347
Query: 439 ETGQKVKPTKELYITKSTGTPFVE--------GEPSQE---FLDLVSGYFESEEVMDYFT 487
++ + +K+ T + E S LDLV F E+
Sbjct: 348 DSLELEPHSKDKITTVYMDIDYKEDIDYITGYPADSPIKSYILDLVQNDF---ELFTVIC 404
Query: 488 RCVGMALLGGNKA-QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEA 546
+G AL N Q+ + I+G +GKS + ++ F + V +
Sbjct: 405 EFLGQALYRKNNIIQKCLIIKGDKSNGKSKFLQILTRFFSAENVSTLDLKRF-------- 456
Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
+ L ++G + I + + + IK++ + + + ++ P T
Sbjct: 457 -ENRFDLFGIVGKMVNIGDDISGQYIGENSNIKKVITSEMLPIEQKGKDLFNYKPY-VTC 514
Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR----DASFAQKLETKYTLE-AKKWFLK 661
N + A RR ++PF+ + + +++ TK + W +
Sbjct: 515 IFSCNNMPRFDDSTKAIKRRLCILPFENTYSEENGNINPHIVEQMTTKENMSNLFNWSIW 574
Query: 662 GVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD---CCDIGENLWEESHSLAKSY 718
G++ + + E +A EE + D + +ID+ ++ + Y
Sbjct: 575 GLRRVLKN-YVITKSEKITEAVEEFDRENDPIKTFIDETAGDTELDLKGYFNMKDTKAVY 633
Query: 719 SEYREQELNYDRKRISTRTVTLNLKQ 744
++Y+ N K ++ LKQ
Sbjct: 634 TDYQIWCNNNGYKELNNINFGKQLKQ 659
>gi|255323765|ref|ZP_05364891.1| phage/plasmid primase, P4 family domain [Corynebacterium
tuberculostearicum SK141]
gi|255298945|gb|EET78236.1| phage/plasmid primase, P4 family domain [Corynebacterium
tuberculostearicum SK141]
Length = 512
Score = 163 bits (413), Expect = 8e-38, Method: Composition-based stats.
Identities = 75/510 (14%), Positives = 169/510 (33%), Gaps = 54/510 (10%)
Query: 286 TFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWS 345
S Y + + ++ +SD + ++ ++Y+ ++ +
Sbjct: 37 PGPSQPYK----VAQQVMRELYSDTDGVPTLTYWRGDWWMYSGTH---WEAVSGSAKDAD 89
Query: 346 LTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKA--- 402
L + + + V K++ ++ P N++ S + V + A
Sbjct: 90 LVIAGQLLKVFDSAVYSKKESNTVTLVPWSPNRSKISEIIFALKPLAYAVVSDTDDAPCF 149
Query: 403 -KSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFV 461
+ AQ A ++ +G+L T + V T ++ T S +
Sbjct: 150 LRDCAQLPGA-PGEYVSMS------------NGLLRWSTRELVGHTPRVFTTYSLPFAYD 196
Query: 462 EGEPSQEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNL 520
+ + + F +D +G + G + + I G +GK T++ +
Sbjct: 197 PQATAPVWEKFLKQIFAHDTAAIDTLQEYLGYVISGRTDLHKALLIVGPTRAGKGTILRV 256
Query: 521 IKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQ 580
++ G Q V + + + P L+G + II + + N+ + +
Sbjct: 257 LRQLVGQQNVTDTSLHSLGSDSGP---------AELIGKPLAIIGDARDARAGNSNRATE 307
Query: 581 M----TGGDCMTARLNY-GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP 635
+ G D ++ + Y G+ P F N + + A R++++ ++
Sbjct: 308 LLLNVIGEDGVSLQRKYLGDWVGRLPTRFAL--ASNVIPRLIDSSAAVVGRFVMMRLEQS 365
Query: 636 IA-NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQ 694
A D KL + W L G++ +G P + K+ + +
Sbjct: 366 FAGQEDEELGAKLAAEL-PGILNWALDGLERLEQQG-RFTEPATMAEMKDAMEGLSAPVR 423
Query: 695 AWIDDCCDI--GENLWEESHSLAKSYSEYREQEL------NYDRKRISTRTVTLNLKQKG 746
+I++ ++ + + + R++ + KQ
Sbjct: 424 RFIEEYLEVTGNPADIVPRRDVYSHWRTWHADNGFTPCNQEEMCNRLTATDGRIRAKQLD 483
Query: 747 FIGGIKREKIEKEWKSKRIIKGLKL-KPAF 775
G K + +K +R I G+KL K AF
Sbjct: 484 VPGA-KPKPGQKRPPRERYILGVKLVKSAF 512
>gi|191639830|ref|YP_001988996.1| RepA protein [Lactobacillus casei BL23]
gi|190714132|emb|CAQ68138.1| RepA protein [Lactobacillus casei BL23]
gi|327383940|gb|AEA55416.1| Phage/plasmid primase, P4 family [Lactobacillus casei LC2W]
gi|327387122|gb|AEA58596.1| Phage/plasmid primase, P4 family [Lactobacillus casei BD-II]
Length = 528
Score = 163 bits (413), Expect = 9e-38, Method: Composition-based stats.
Identities = 67/361 (18%), Positives = 127/361 (35%), Gaps = 24/361 (6%)
Query: 422 LDSSSR--FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEG-EPSQEFLDLVSGYFE 478
D + + +G + T + + + + Y+ + + E L++
Sbjct: 171 FDENPHPELVAFTNGTYSILTNKMQESSADNYMLNAHEYAVDPDRDDCPETERLLAAMMG 230
Query: 479 SEEVMDYFTRCVGMALLGGNK-AQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
+ F +G + Q F+ + G GG GKSTL+ I G V ++ +D
Sbjct: 231 DAAIT--FEEFIGYMFYRSYRPFQAFLWLYGTGGEGKSTLIRRITNLIGRDNVSASKPAD 288
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
+ G L G I+++ + + A IK +TGGD + A +
Sbjct: 289 L------ANGDRRFETANLYGKEANIVADVGSDYLKSTAAIKSLTGGDYIAAEFKGIQNF 342
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKK 657
+ N+ + + R VI + Q + K E +
Sbjct: 343 KFMNYA-KLLFSANEMPAFSDHSSGFADRVTVIKMINGDTRHTHWWDQFDDAKMDEETPR 401
Query: 658 WFLKG----VKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDI--GENLWEES 711
+ +K KA S GL P+ + A +E D ++ ++D +I E+ E S
Sbjct: 402 FAMKCMHMFAKALKSGGL--TKPDSVVNASQEWLDANDHFKEFLDQYAEINLNEDRGEVS 459
Query: 712 HSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEW-KSKRIIKGLK 770
+ Y + + D+ +T+ +T L G R + + + R GL+
Sbjct: 460 TVVTAEYKRFCQDNNYMDKT--TTQAITKKLDAYGVKKVNSRRGFDNDTFGNTRRYIGLR 517
Query: 771 L 771
L
Sbjct: 518 L 518
>gi|188491844|ref|ZP_02999114.1| phage/plasmid primase C-terminal domain, P4 family [Escherichia
coli 53638]
gi|188487043|gb|EDU62146.1| phage/plasmid primase C-terminal domain, P4 family [Escherichia
coli 53638]
Length = 777
Score = 163 bits (413), Expect = 9e-38, Method: Composition-based stats.
Identities = 62/338 (18%), Positives = 114/338 (33%), Gaps = 36/338 (10%)
Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
R +G ++G+LD + G + ++ F + EF +
Sbjct: 411 RRLIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVEGETLETHAPEFWRWLDRAAG 470
Query: 479 S-EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
E D + M L Q F+ + G GGSGKS + + G +A
Sbjct: 471 GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIET 530
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
+ R L G ++ + + E + A +K +TGGD ++ Y + Y
Sbjct: 531 LESPRER---------AALTGFSLIRLPD-QEKWSGDGAGLKAITGGDAVSVDPKYRDAY 580
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655
S + V N + + RR ++I F + IA RD K+ + +
Sbjct: 581 STHIPA-VILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITRELAVIV 639
Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID--DCCDIGENLWEESHS 713
+ K +++ L + +A ++ D +I + ++ + S
Sbjct: 640 RHLMQKFSDPMLARSLLQSQ-QNSDEALNI-KRDADPTFDFIGYLETLPQTSGMYMGNAS 697
Query: 714 ---------LAKSYSEYREQELNYDRKRISTRTVTLNL 742
L +Y Y E R +S + L L
Sbjct: 698 IIPRNYRKYLYHAYLAYMEANG--YRNVLSLKMFGLGL 733
>gi|320353144|ref|YP_004194483.1| phage/plasmid primase, P4 family [Desulfobulbus propionicus DSM
2032]
gi|320121646|gb|ADW17192.1| phage/plasmid primase, P4 family [Desulfobulbus propionicus DSM
2032]
Length = 548
Score = 163 bits (413), Expect = 1e-37, Method: Composition-based stats.
Identities = 64/382 (16%), Positives = 127/382 (33%), Gaps = 42/382 (10%)
Query: 411 AGSIFSITSDL--LDSSSRFLGEQDGILDLETGQ-----KVKPTKELYITKSTGTPFVEG 463
A + IT+D + L +G L+ Q P ++ + T +
Sbjct: 181 ANHLIMITTDDTFFTNVPVGLACANGFHHLKDHQICVEALTAPHRQRVMVDVTP----QQ 236
Query: 464 EPSQEFLDLVSGYFESEE------VMDYFTRCVGMALLGGNKA-QRFIHIRGV-GGSGKS 515
+ + F + F+S E + G +LG Q+ I G +GK
Sbjct: 237 QKTPLFDIFLHDTFKSSEPGDEEQQVTLLQEIFGAIILGLMAQFQKAILFYDPFGRAGKG 296
Query: 516 TLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA 575
T+ +I + + P L L G R+ + E ++ I +
Sbjct: 297 TMERIITNLI---------PGEFVSAVSPFKWNGEYYLASLAGKRLNSVGELPDSKPIPS 347
Query: 576 AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFD-- 633
A+ K +TGGD + R ++ + F+ N + + +A++ R+++I F
Sbjct: 348 AEFKTVTGGDLVAGRHPGQRPFTFKNEAAHLFM-SNHLITTNDHSEAFFCRWLIIEFPNS 406
Query: 634 --KPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTD 691
+ D A ++ K W L+G K + G + + E+ R +
Sbjct: 407 RLRTGLPIDPGIADRIIQKELSGIAHWALEGAKRLLENG-KFSNSKAHDRLMEKWRLTAN 465
Query: 692 TYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGI 751
+ +I + C G+ +Y E+ + + + ++ I
Sbjct: 466 SLLEFIHEECIRGDEHKVRRAEFYAAYKEWCKDNGRHP--------FSKGRVKELLSHNI 517
Query: 752 KREKIEKEWKSKRIIKGLKLKP 773
I +G+ KP
Sbjct: 518 GLGVTHTSLDGYEIFRGVAFKP 539
>gi|268592737|ref|ZP_06126958.1| putative P4-specific DNA primase [Providencia rettgeri DSM 1131]
gi|291311513|gb|EFE51966.1| putative P4-specific DNA primase [Providencia rettgeri DSM 1131]
Length = 801
Score = 163 bits (412), Expect = 1e-37, Method: Composition-based stats.
Identities = 97/666 (14%), Positives = 192/666 (28%), Gaps = 132/666 (19%)
Query: 177 FQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFL-----SCFGEEFYNGS-----H 226
+ +P + + + T + + + + L S ++ H
Sbjct: 203 VDALPLPEIALVSKKGKATSDTTTQSEDFADFDDLEALDECLISDIRSALWHPEMLKQAH 262
Query: 227 DE--WIPVV--MAVHHETRGSSKGKEIARRWSKQGSTYDEENF-----NYKWDTFDFEEI 277
++ WI +A T + + + WS + Y + +WD
Sbjct: 263 NDHQWISNGYRLASLKNTELEDEARTLWVEWSLTAADYYPDEQLDEVAGNRWDNALEPNG 322
Query: 278 GDTAKKRSTFTSLFYHHGKLI---PKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWY 334
L + + + + + S+ + + Y L D++ Y
Sbjct: 323 SSYRGIFFEAQKLGWKNPAALRMKAENIGKMAASERG--ELLAEYYGQIRLKDEDSERVY 380
Query: 335 KKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQ 394
N IW D + L++ DN+ +
Sbjct: 381 YY---NGKIWEYLPDIVLRRQ-------------LAKMFIDNDATYTN------------ 412
Query: 395 NVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITK 454
N+ + + A + TS +G +G+ DL + ++T
Sbjct: 413 ----NAISAAVEAMKLAIPVMGETSR------FLIGFANGVYDLTEKSFRPHSAIDWLTN 462
Query: 455 STGTPFVEGEP-------SQEFLDLVSGYFESE-EVMDYFTRCVGMALLGGNKAQRFIHI 506
F P + F +S + E M+ + M L Q F+ I
Sbjct: 463 HNNIEFTSPLPNENYQDHAPNFYKWLSQSSGGKNEYMERIKAALFMVLANRYDWQLFLEI 522
Query: 507 RGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISE 566
G GGSGKS + G+ + D+ R ++ +G ++I+ +
Sbjct: 523 TGPGGSGKSVFTGIAALLAGHHNTASGSVRDLDIPRERDS---------FVGKSLIILPD 573
Query: 567 TNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHL-FVRNPDDAWWR 625
+ A +K +TGGD + + + + N R
Sbjct: 574 QERYSG-SGAGLKAITGGDPVKVDPKHVRPFETVIEG--VVMATNNEPMRFNEHQGGIAR 630
Query: 626 RYIVIPFDKPIANRDAS--FAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAK 683
R ++ PF + +D +K++ + + ++G+ A + D PE
Sbjct: 631 RQVIFPFTSQVKEKDIDNQLLEKIKAELPV-----IVRGLLA------EFDKPEDAKCLL 679
Query: 684 EEERQ---------GTDTYQAW---IDDCCDIGENLWEES-------HSLAKSYSEYREQ 724
+R T+ + + + + L +Y Y +
Sbjct: 680 LAQRNSAEALKVKQETNPLYGFCSYLKALMLVNGMYMGTATPPFYPRTHLYHAYLAYMDA 739
Query: 725 ELNYDRKRISTRTVTLN----LKQKGFIGGIKREKIEKEWKSKRIIKGLK------LKPA 774
+ + +S L LK+ G KR K K R GL +
Sbjct: 740 HGH--KYVLSLTDFGLKLPNILKESGIELTKKRLK-----KGYRYNVGLTEDADEWIISD 792
Query: 775 FESVDD 780
F DD
Sbjct: 793 FLDEDD 798
>gi|160943486|ref|ZP_02090719.1| hypothetical protein FAEPRAM212_00977 [Faecalibacterium prausnitzii
M21/2]
gi|158445165|gb|EDP22168.1| hypothetical protein FAEPRAM212_00977 [Faecalibacterium prausnitzii
M21/2]
Length = 448
Score = 163 bits (412), Expect = 1e-37, Method: Composition-based stats.
Identities = 85/444 (19%), Positives = 160/444 (36%), Gaps = 29/444 (6%)
Query: 343 IWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKA 402
W + K+ + + K + L ++ D N + ++ ++ A
Sbjct: 26 PWVDSKGKVRETAYCQYLLEKHPMMCLKQKLFDQNGEVDEDALLYEVHSDLRDFVLDNLA 85
Query: 403 KSTAQSLEAGSIFSITSD---LLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTP 459
K Q L+A I + T + LD + Q+G L+ V P KEL + +
Sbjct: 86 KKEKQVLDALRIETYTPEWKPQLDR----IHLQNGTYFLDERGFV-PEKELCLNR-LPVE 139
Query: 460 FVEGEPSQ-EFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLM 518
+ P+ ++L+ + G E+++ +G L+ KAQ+ + + G GG GKS +
Sbjct: 140 YQPDAPAPTKWLEFLDGLLIPEDILT-LQEYLGYLLIPSTKAQKMLVMTGKGGEGKSRIG 198
Query: 519 NLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKI 578
L+K FG + + I NR L +++ + N I
Sbjct: 199 LLLKKLFG-EASHSESILRIETNRFAS--------ANLEYKLVMVDDDLNMVALPETRNI 249
Query: 579 KQM-TGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF-DKPI 636
K + T D + + + D +WRR I+I D+
Sbjct: 250 KSIVTAEDRLCIERKNKQAVQGLLYVRFICFGNGNLVAAHDDSDGFWRRQILITVKDRDP 309
Query: 637 ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAW 696
A D F + ++ W L+G+ ++ I E ++ E +D +
Sbjct: 310 ARVDNPFLIEELSEERPGILLWMLEGLHRLLANRYQFTISERSIQNLEAAMADSDNLTQF 369
Query: 697 ID--DCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
+ + E S L ++Y+++ E L + LK G G +
Sbjct: 370 MQATAYVRFKPDTEERSTYLYRAYTKWCEDNLESPVPQKKFSQFL--LKNAGKYGLTFSK 427
Query: 755 KIEKEWKSKRIIKGLKLKPAFESV 778
IE ++ R +G+ + PAF +
Sbjct: 428 HIEGKY---RGFRGVCVHPAFAAA 448
>gi|260857931|ref|YP_003231822.1| putative DNA primase [Escherichia coli O26:H11 str. 11368]
gi|257756580|dbj|BAI28082.1| putative DNA primase [Escherichia coli O26:H11 str. 11368]
gi|323155327|gb|EFZ41510.1| phage/plasmid primase, P4 family, C-terminal domain protein
[Escherichia coli EPECa14]
Length = 777
Score = 162 bits (411), Expect = 2e-37, Method: Composition-based stats.
Identities = 60/338 (17%), Positives = 112/338 (33%), Gaps = 36/338 (10%)
Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
+G ++G+LD + G + ++ F + F +
Sbjct: 411 RHLIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVDGETLETHAPAFWRWLDRAAG 470
Query: 479 S-EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
E D + M L Q F+ + G GGSGKS + + G +A
Sbjct: 471 GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIET 530
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
+ R L G ++ + + E + A +K +TGGD ++ Y + Y
Sbjct: 531 LESPRER---------AALTGFSLIRLPD-QEKWSGDGAGLKAITGGDAVSVDPKYRDAY 580
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655
S + V N + + RR ++I F + IA RD K+ + +
Sbjct: 581 STHIPA-VILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITRELAVIV 639
Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID--DCCDIGENLWEESHS 713
+ K +++ L + +A ++ D +I + ++ + S
Sbjct: 640 RHLMQKFSDPMLARSLLQSQ-QNSDEALNI-KRDADPTFDFIGYLETLPQTSGMYMGNAS 697
Query: 714 ---------LAKSYSEYREQELNYDRKRISTRTVTLNL 742
L +Y Y E R +S + L L
Sbjct: 698 IIPRNYRKYLYHAYLAYMEANG--YRNVLSLKMFGLGL 733
>gi|324020383|gb|EGB89602.1| nucleoside triphosphatase, D5 family [Escherichia coli MS 117-3]
Length = 777
Score = 162 bits (410), Expect = 2e-37, Method: Composition-based stats.
Identities = 61/338 (18%), Positives = 114/338 (33%), Gaps = 36/338 (10%)
Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
R +G ++G+LD ++G + ++ F + F +
Sbjct: 411 RRLIGFRNGVLDTQSGTFHPHSPSHWMRTLCDVDFTPPVEGETLETHAPAFWRWLDRAAG 470
Query: 479 S-EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
E D + M L Q F+ + G GGSGKS + + G +A
Sbjct: 471 GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIET 530
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
+ R L G ++ + + E + A +K +TGGD ++ Y + Y
Sbjct: 531 LESPRER---------AALTGFSLIRLPD-QEKWSGDGAGLKAITGGDAVSVDPKYRDAY 580
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655
S + V N + + RR ++I F + IA RD K+ + +
Sbjct: 581 STHIPA-VILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITRELAVIV 639
Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID--DCCDIGENLWEESHS 713
+ K +++ L + +A ++ D +I + ++ + S
Sbjct: 640 RHLMQKFSDPMLARSLLQSQ-QNSDEALNI-KRDADPTFDFIGYLETLPQTSGMYMGNAS 697
Query: 714 ---------LAKSYSEYREQELNYDRKRISTRTVTLNL 742
L +Y Y E R +S + L L
Sbjct: 698 IIPRNYRKYLYHAYLAYMEANG--YRNVLSLKMFGLGL 733
>gi|15897095|ref|NP_341700.1| primase (carboxy-end fragment) [Sulfolobus solfataricus P2]
gi|13813270|gb|AAK40490.1| Primase (Carboxy-end fragment) [Sulfolobus solfataricus P2]
Length = 532
Score = 162 bits (410), Expect = 2e-37, Method: Composition-based stats.
Identities = 59/330 (17%), Positives = 117/330 (35%), Gaps = 24/330 (7%)
Query: 466 SQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF 525
+ L++ + + V + +G L + ++ I G G+GKST +NLIK
Sbjct: 159 CPKSLEVFKQWANEKWVTLF--EIIGYTLFPKIEFRKAFMILGPRGTGKSTFINLIKKLL 216
Query: 526 GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGD 585
G V+N + ++ L L + +SET E + + +K +TGGD
Sbjct: 217 GRGNVVNIPLHILFGDKN------RFVLAELYHKLVNAVSETKEYNLDDMDTLKVLTGGD 270
Query: 586 CMTARLNYGNTYSESPASFTPFIVPNKHLFVRN-PDDAWWRRYIVIPFDKPIANRDASFA 644
+TA + + + + +P + I NK +R+ D A+W R+++I F + A
Sbjct: 271 RITADVKFKDPITFTPYA-KLVIASNKPPTIRDKNDMAFWHRWLIIEFPNQFEDNTAWGD 329
Query: 645 QKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIG 704
+ + + G D + + + D ++ + G
Sbjct: 330 KTFTEDELEGILTVSILAFSRVLLHG-KFDFEQTEEEVRGIWLSTIDYVYKFVKEKLKHG 388
Query: 705 E-------NLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIE 757
E + + L + Y EY + + L+ +
Sbjct: 389 EIMITKNADDYVRVKELYRMYLEYCSTNG---YNATTYKGFVRRLRD---YFNLTVVMKN 442
Query: 758 KEWKSKRIIKGLKLKPAFESVDDNSNIIDF 787
E K R + G+K+ + + +F
Sbjct: 443 VEGKRFRAVVGIKINTVQTNETTGGDYGEF 472
>gi|323184660|gb|EFZ70032.1| phage/plasmid primase, P4 family, C-terminal domain protein
[Escherichia coli 1357]
Length = 777
Score = 162 bits (409), Expect = 2e-37, Method: Composition-based stats.
Identities = 61/338 (18%), Positives = 114/338 (33%), Gaps = 36/338 (10%)
Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
R +G ++G+LD ++G + ++ F + F +
Sbjct: 411 RRLIGFRNGVLDTQSGTFHPHSPSHWMRTLCDVDFTPPVEGETLETHAPAFWRWLDRAAG 470
Query: 479 S-EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
E D + M L Q F+ + G GGSGKS + + G +A
Sbjct: 471 GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIET 530
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
+ R L G ++ + + E + A +K +TGGD ++ Y + Y
Sbjct: 531 LESPRER---------AALTGFSLIRLPD-QEKWSGDGAGLKAITGGDAVSVDPKYRDAY 580
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655
S + V N + + RR ++I F + IA RD K+ + +
Sbjct: 581 STHIPA-VILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITRELAVIV 639
Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID--DCCDIGENLWEESHS 713
+ K +++ L + +A ++ D +I + ++ + S
Sbjct: 640 RHLMQKFSDPMLARSLLQSQ-QNSDEALNI-KRDADPTFDFIGYLETLPQTSGMYMGNAS 697
Query: 714 ---------LAKSYSEYREQELNYDRKRISTRTVTLNL 742
L +Y Y E R +S + L L
Sbjct: 698 IIPRNYRKYLYHAYLAYMEANG--YRNVLSLKMFGLGL 733
>gi|284175976|ref|ZP_06389945.1| primase (carboxy-end fragment) [Sulfolobus solfataricus 98/2]
Length = 523
Score = 162 bits (409), Expect = 3e-37, Method: Composition-based stats.
Identities = 59/330 (17%), Positives = 117/330 (35%), Gaps = 24/330 (7%)
Query: 466 SQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF 525
+ L++ + + V + +G L + ++ I G G+GKST +NLIK
Sbjct: 150 CPKSLEVFKQWANEKWVTLF--EIIGYTLFPKIEFRKAFMILGPRGTGKSTFINLIKKLL 207
Query: 526 GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGD 585
G V+N + ++ L L + +SET E + + +K +TGGD
Sbjct: 208 GRGNVVNIPLHILFGDKN------RFVLAELYHKLVNAVSETKEYNLDDMDTLKVLTGGD 261
Query: 586 CMTARLNYGNTYSESPASFTPFIVPNKHLFVRN-PDDAWWRRYIVIPFDKPIANRDASFA 644
+TA + + + + +P + I NK +R+ D A+W R+++I F + A
Sbjct: 262 RITADVKFKDPITFTPYA-KLVIASNKPPTIRDKNDMAFWHRWLIIEFPNQFEDNTAWGD 320
Query: 645 QKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIG 704
+ + + G D + + + D ++ + G
Sbjct: 321 KTFTEDELEGILTVSILAFSRVLLHG-KFDFEQTEEEVRGIWLSTIDYVYKFVKEKLKHG 379
Query: 705 E-------NLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIE 757
E + + L + Y EY + + L+ +
Sbjct: 380 EIMITKNADDYVRVKELYRMYLEYCSTNG---YNATTYKGFVRRLRD---YFNLTVVMKN 433
Query: 758 KEWKSKRIIKGLKLKPAFESVDDNSNIIDF 787
E K R + G+K+ + + +F
Sbjct: 434 VEGKRFRAVVGIKINTVQTNETTGGDYGEF 463
>gi|254504141|ref|ZP_05116292.1| hypothetical protein SADFL11_4180 [Labrenzia alexandrii DFL-11]
gi|222440212|gb|EEE46891.1| hypothetical protein SADFL11_4180 [Labrenzia alexandrii DFL-11]
Length = 1293
Score = 162 bits (409), Expect = 3e-37, Method: Composition-based stats.
Identities = 61/317 (19%), Positives = 114/317 (35%), Gaps = 47/317 (14%)
Query: 2 PVMQWKEQAKQAI----HNGFKLIPLRLGDKRPQRLG-------KWEE---------QLL 41
PV + A + I N ++P DKRP + G W + L
Sbjct: 70 PVRRSSYHAARLIARFGQNNVHVLPAMPKDKRPGKYGGSGWFGGTWGQFTNPGGETIYPL 129
Query: 42 SSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHG-TPIVRIGQKP 100
+D L G + G + A D+D D A F+ E+L +P RIG+ P
Sbjct: 130 KERALDVLQHHGGAGITLGGHHNIAAIDMDVMDPVLAAEFESVLELLCDKSPFERIGKSP 189
Query: 101 KILIPFRMNKEGIKKKKTTE----STQGHLDILGC-GQYFVAYNIHPKTKKEYTWTTPPH 155
K L +R K IK + E S + +++ Q+ V Y +H TK+ YTW
Sbjct: 190 KKLWLYRTEKP-IKSYASGEWFTDSGKNQVELRAQSNQFIVCYGVHKDTKRPYTWPNASL 248
Query: 156 -RFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTW----------TNNNNRQ 204
V D PL+S + + + + F + + ++ ++
Sbjct: 249 YDCDVSDIPLISADALIDMLEVFDGMAARHGAKGIAKKQNRGAVPVGLAEANRNSHRLED 308
Query: 205 YTN--REITAFLSCFGEEFYNGS-----HDEWIPVVMAVHHETR-GSSKGKEIARRWSKQ 256
T + + C +F++ + W + ++ + + + +A S
Sbjct: 309 TTPLEDAVAFIVECAEGDFFDPPEELLGYHGWTNSIASIVNSVPHDRALAESLAHDISAA 368
Query: 257 GSTYD-EENFNYKWDTF 272
Y+ ++ +D++
Sbjct: 369 LPGYEGPDDVQKTFDSY 385
>gi|82546473|ref|YP_410420.1| DNA primase [Shigella boydii Sb227]
gi|81247884|gb|ABB68592.1| putative DNA primase [Shigella boydii Sb227]
gi|320184529|gb|EFW59331.1| DNA primase , phage-associated [Shigella flexneri CDC 796-83]
gi|332086985|gb|EGI92119.1| phage/plasmid primase, P4 family, C-terminal domain protein
[Shigella boydii 3594-74]
Length = 777
Score = 162 bits (409), Expect = 3e-37, Method: Composition-based stats.
Identities = 61/338 (18%), Positives = 113/338 (33%), Gaps = 36/338 (10%)
Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
R +G ++G+LD + G + ++ F + F +
Sbjct: 411 RRLIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVEGETLETHAPAFWRWLDRAAG 470
Query: 479 S-EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
E D + M L Q F+ + G GGSGKS + + G +A
Sbjct: 471 GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIET 530
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
+ R L G ++ + + E + A +K +TGGD ++ Y + Y
Sbjct: 531 LESPRER---------AALTGFSLIRLPD-QEKWSGDGAGLKAITGGDAVSVDPKYRDAY 580
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655
S + V N + + RR ++I F + IA RD K+ + +
Sbjct: 581 STHIPA-VILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITRELAVIV 639
Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID--DCCDIGENLWEESHS 713
+ K +++ L + +A ++ D +I + ++ + S
Sbjct: 640 RHLMQKFSDPMLARSLLQSQ-QNSDEALNI-KRDADPTFDFIGYLETLPQTSGMYMGNAS 697
Query: 714 ---------LAKSYSEYREQELNYDRKRISTRTVTLNL 742
L +Y Y E R +S + L L
Sbjct: 698 IIPRNYRKYLYHAYLAYMEANG--YRNVLSLKMFGLGL 733
>gi|258511071|ref|YP_003184505.1| DNA primase small subunit [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
gi|257477797|gb|ACV58116.1| DNA primase small subunit [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
Length = 1036
Score = 162 bits (409), Expect = 3e-37, Method: Composition-based stats.
Identities = 75/447 (16%), Positives = 153/447 (34%), Gaps = 42/447 (9%)
Query: 368 DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIF-SITSDL-LDSS 425
D ++E + ++ T EE + + SI ++
Sbjct: 570 DGADEAVIRDFILEALETLKPTWATWSRAEEIKRMLINNVQRDKNHSVESIRVHEVWNTE 629
Query: 426 SRFLGEQDGILDL-----ETGQKVKPTKELYITKSTGTPFVEGE--PSQEF--------- 469
+ +G+LD+ + + I PF E + +
Sbjct: 630 P-LVPFVNGLLDMSDPFDHDWRVYDFSPRHRINWKLTIPFFENWYRTPKSWTLAMKDAEV 688
Query: 470 --LDLVSGYFESEEVMDYFTRCVGMALLG-GNKAQRFIHIRGVGGSGKSTLMNLIKYAFG 526
LD F +E +G L + + + G G +GKSTL+ ++ AFG
Sbjct: 689 DVLDFFRTTFPDDETRRSILEFLGYCLCRWDQSEECYAILYGPGQNGKSTLLGMLAKAFG 748
Query: 527 NQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDC 586
Y + + +NR A L + I I+ + + + +K G D
Sbjct: 749 -IYAVTESVQSLERNRFASAS--------LTRAAIDIVPDMAGTGIEDTSFLKGWIGNDV 799
Query: 587 MTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQK 646
+ A + ++ P + N+ ++P ++RR ++ P + + + ++
Sbjct: 800 VRAERKFKASFEFKPQT-KLIYGANELPPTKDPTHGYFRRILLYPMMERFKRQGPGWVER 858
Query: 647 LETKYTLEAKKWFLKGVKAY---ISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD-CCD 702
L T L + G+ Y +G ++ + L+ K+ + D +A ID+ +
Sbjct: 859 LRTPEALSYMCYL--GLLHYRQMRREGRNITESKEMLREKDYYWRANDVVKAAIDEGIIE 916
Query: 703 IGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKS 762
G+ L K+ Y ++ RK + L+ I+ + + K
Sbjct: 917 FGKEFSVPRDLLQKAMEIYAKETG---RKYPGAAKLLERLRNYA-PHKIEYSRPRRNGKR 972
Query: 763 KRIIKGLKLKPAFESVDDNSNIIDFKR 789
+ G+ L A S+ + I+D R
Sbjct: 973 IHMWTGVTLGEAGRSLFVSREIVDLDR 999
>gi|315615291|gb|EFU95927.1| phage/plasmid primase, P4 family, C-terminal domain protein
[Escherichia coli 3431]
Length = 777
Score = 162 bits (409), Expect = 3e-37, Method: Composition-based stats.
Identities = 61/338 (18%), Positives = 114/338 (33%), Gaps = 36/338 (10%)
Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
R +G ++G+LD ++G + ++ F + F +
Sbjct: 411 RRLIGFRNGVLDTQSGTFHPHSPSHWMRTLCDVDFTPPVEGETLETHAPAFWRWLDRAAG 470
Query: 479 S-EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
E D + M L Q F+ + G GGSGKS + + G +A
Sbjct: 471 GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIET 530
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
+ R L G ++ + + E + A +K +TGGD ++ Y + Y
Sbjct: 531 LESPRER---------AALTGFSLIRLPD-QEKWSGDGAGLKAITGGDAVSVDPKYRDAY 580
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655
S + V N + + RR ++I F + IA RD K+ + +
Sbjct: 581 STHIPA-VILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITRELAVIV 639
Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID--DCCDIGENLWEESHS 713
+ K +++ L + +A ++ D +I + ++ + S
Sbjct: 640 RHLMQKFSDPMLARSLLQSQ-QNSDEALNI-KRDADPTFDFIGYLETLPQTSGMYMGNAS 697
Query: 714 ---------LAKSYSEYREQELNYDRKRISTRTVTLNL 742
L +Y Y E R +S + L L
Sbjct: 698 IIPRNYRKYLYHAYLAYMEANG--YRNVLSLKMFGLGL 733
>gi|257437684|ref|ZP_05613439.1| phage/plasmid primase, P4 family domain protein [Faecalibacterium
prausnitzii A2-165]
gi|257199991|gb|EEU98275.1| phage/plasmid primase, P4 family domain protein [Faecalibacterium
prausnitzii A2-165]
Length = 448
Score = 161 bits (408), Expect = 3e-37, Method: Composition-based stats.
Identities = 85/444 (19%), Positives = 160/444 (36%), Gaps = 29/444 (6%)
Query: 343 IWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKA 402
W + K+ + + K + L ++ D N + ++ ++ A
Sbjct: 26 PWVDSKGKVRETAYCQYLLEKHPMMCLKQKLFDQNGEVDEDALLYEVHSDLRDFVLDNLA 85
Query: 403 KSTAQSLEAGSIFSITSD---LLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTP 459
K Q L+A I + T + LD + Q+G L+ V P KEL + +
Sbjct: 86 KKEKQVLDALRIETYTPEWKPQLDR----IHLQNGTYFLDERGFV-PEKELCLNR-LPVE 139
Query: 460 FVEGEPSQ-EFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLM 518
+ P+ ++L+ + G E+++ +G L+ KAQ+ + + G GG GKS +
Sbjct: 140 YQPDAPAPTKWLEFLDGLLIPEDILT-LQEYLGYLLIPSTKAQKMLVMTGKGGEGKSRIG 198
Query: 519 NLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKI 578
L+K FG + + I NR L +++ + N I
Sbjct: 199 LLLKKLFG-EASHSESILRIETNRFAS--------ANLEYKLVMVDDDLNMVALPETRNI 249
Query: 579 KQM-TGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF-DKPI 636
K + T D + + + D +WRR I+I D+
Sbjct: 250 KSIVTAEDRLCIERKNKQAVQGLLYVRFICFGNGNLVAAHDDSDGFWRRQILITVKDRDP 309
Query: 637 ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAW 696
A D F + ++ W L+G+ ++ I E ++ E +D +
Sbjct: 310 ARVDNPFLIEELSEERPGILLWMLEGLHRLLANRYQFTISERSIQNLEAAMADSDNLTQF 369
Query: 697 I--DDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
+ + E S L ++Y+++ E L + LK G G +
Sbjct: 370 MQASAYVRFKPDTEERSTYLYRAYTKWCEDNLESPVPQKKFSQFL--LKNAGKYGLTFSK 427
Query: 755 KIEKEWKSKRIIKGLKLKPAFESV 778
IE ++ R +G+ + PAF +
Sbjct: 428 HIEGKY---RGFRGVCVHPAFAAA 448
>gi|579075|emb|CAA53906.1| unnamed protein product [Streptomyces phage phiC31]
Length = 202
Score = 161 bits (408), Expect = 3e-37, Method: Composition-based stats.
Identities = 43/201 (21%), Positives = 81/201 (40%), Gaps = 15/201 (7%)
Query: 577 KIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI 636
+K++TG D +TAR ++ +P +F + N ++ D+ WRR +IPF +
Sbjct: 1 MLKRVTGKDKVTARFLRQEFFTFAP-TFLIMLATNHKPKFKSQDEGLWRRVKLIPFVRYF 59
Query: 637 A--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQ 694
A RD +KL + + W ++G + + GL PE A E R +D
Sbjct: 60 APEERDYDLDRKLRAE-SAGIVAWAVRGAVEWYANGLG--DPESISTATREYRATSDALA 116
Query: 695 AWIDDCCD-IGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKR 753
+ D ++ SY ++ E E + S + ++++G
Sbjct: 117 GFFPGVLDAADDSAIVSGADAYNSYRDWCEAEGLKSTEVWSRKAFYGAMEERGI------ 170
Query: 754 EKIEKEWKSKRIIKGLKLKPA 774
+K+ + + G+K A
Sbjct: 171 --GKKKTNTGIALVGVKFADA 189
>gi|300905045|ref|ZP_07122855.1| nucleoside triphosphatase, D5 family [Escherichia coli MS 84-1]
gi|301305722|ref|ZP_07211809.1| nucleoside triphosphatase, D5 family [Escherichia coli MS 124-1]
gi|300403032|gb|EFJ86570.1| nucleoside triphosphatase, D5 family [Escherichia coli MS 84-1]
gi|300838976|gb|EFK66736.1| nucleoside triphosphatase, D5 family [Escherichia coli MS 124-1]
gi|315252798|gb|EFU32766.1| nucleoside triphosphatase, D5 family [Escherichia coli MS 85-1]
Length = 777
Score = 161 bits (408), Expect = 3e-37, Method: Composition-based stats.
Identities = 61/338 (18%), Positives = 113/338 (33%), Gaps = 36/338 (10%)
Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
R +G ++G+LD + G + ++ F + F +
Sbjct: 411 RRLIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVDGETLETHAPAFWRWLDRAAG 470
Query: 479 S-EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
E D + M L Q F+ + G GGSGKS + + G +A
Sbjct: 471 GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIET 530
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
+ R L G ++ + + E + A +K +TGGD ++ Y + Y
Sbjct: 531 LESPRER---------AALTGFSLIRLPD-QEKWSGDGAGLKAITGGDAVSVDPKYRDAY 580
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655
S + V N + + RR ++I F + IA RD K+ + +
Sbjct: 581 STHIPA-VILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITRELAVIV 639
Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID--DCCDIGENLWEESHS 713
+ K +++ L + +A ++ D +I + ++ + S
Sbjct: 640 RHLMQKFSDPMLARSLLQSQ-QNSDEALNI-KRDADPTFDFIGYLETLPQTSGMYMGNAS 697
Query: 714 ---------LAKSYSEYREQELNYDRKRISTRTVTLNL 742
L +Y Y E R +S + L L
Sbjct: 698 IIPRNYRKYLYHAYLAYMEANG--YRNVLSLKMFGLGL 733
>gi|323182012|gb|EFZ67423.1| phage/plasmid primase, P4 family, C-terminal domain protein
[Escherichia coli 1357]
Length = 777
Score = 161 bits (408), Expect = 3e-37, Method: Composition-based stats.
Identities = 61/338 (18%), Positives = 113/338 (33%), Gaps = 36/338 (10%)
Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
R +G ++G+LD + G + ++ F + F +
Sbjct: 411 RRLIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVDGETLETHAPAFWRWLDRAAG 470
Query: 479 S-EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
E D + M L Q F+ + G GGSGKS + + G +A
Sbjct: 471 GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIET 530
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
+ R L G ++ + + E + A +K +TGGD ++ Y + Y
Sbjct: 531 LESPRER---------AALTGFSLIRLPD-QEKWSGDGAGLKAITGGDAVSVDPKYRDAY 580
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655
S + V N + + RR ++I F + IA RD K+ + +
Sbjct: 581 STHIPA-VILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITRELAVIV 639
Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID--DCCDIGENLWEESHS 713
+ K +++ L + +A ++ D +I + ++ + S
Sbjct: 640 RHLMQKFSDPMLARSLLQSQ-QNSDEALNI-KRDADPTFDFIGYLETLPQTSGMYMGNAS 697
Query: 714 ---------LAKSYSEYREQELNYDRKRISTRTVTLNL 742
L +Y Y E R +S + L L
Sbjct: 698 IIPRNYRKYLYHAYLAYMEANG--YRNVLSLKMFGLGL 733
>gi|323183679|gb|EFZ69075.1| phage/plasmid primase, P4 family, C-terminal domain protein
[Escherichia coli 1357]
Length = 777
Score = 161 bits (408), Expect = 3e-37, Method: Composition-based stats.
Identities = 61/338 (18%), Positives = 113/338 (33%), Gaps = 36/338 (10%)
Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
R +G ++G+LD + G + ++ F + F +
Sbjct: 411 RRLIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVEGETLETHAPAFWRWLDRAAG 470
Query: 479 S-EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
E D + M L Q F+ + G GGSGKS + + G +A
Sbjct: 471 GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIET 530
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
+ R L G ++ + + E + A +K +TGGD ++ Y + Y
Sbjct: 531 LESPRER---------AALTGFSLIRLPD-QEKWSGDGAGLKAITGGDAVSVDPKYRDAY 580
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655
S + V N + + RR ++I F + IA RD K+ + +
Sbjct: 581 STHIPA-VILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITRELAVIV 639
Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID--DCCDIGENLWEESHS 713
+ K +++ L + +A ++ D +I + ++ + S
Sbjct: 640 RHLMQKFSDPMLARSLLQSQ-QNSDEALNI-KRDADPTFDFIGYLETLPQTSGMYMGNAS 697
Query: 714 ---------LAKSYSEYREQELNYDRKRISTRTVTLNL 742
L +Y Y E R +S + L L
Sbjct: 698 IIPRNYRKYLYHAYLAYMEANG--YRNVLSLKMFGLGL 733
>gi|294492921|gb|ADE91677.1| prophage LambdaSa04, DNA primase, P4 family [Escherichia coli
IHE3034]
Length = 777
Score = 161 bits (408), Expect = 3e-37, Method: Composition-based stats.
Identities = 61/338 (18%), Positives = 113/338 (33%), Gaps = 36/338 (10%)
Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
R +G ++G+LD + G + ++ F + F +
Sbjct: 411 RRLIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVEGETLETHAPAFWRWLDRAAG 470
Query: 479 S-EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
E D + M L Q F+ + G GGSGKS + + G +A
Sbjct: 471 GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIET 530
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
+ R L G ++ + + E + A +K +TGGD ++ Y + Y
Sbjct: 531 LESPRER---------AALTGFSLIRLPD-QEKWSGDGAGLKAITGGDAVSVDPKYRDAY 580
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655
S + V N + + RR ++I F + IA RD K+ + +
Sbjct: 581 STHIPA-VILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITRELAVIV 639
Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID--DCCDIGENLWEESHS 713
+ K +++ L + +A ++ D +I + ++ + S
Sbjct: 640 RHLMQKFSDPMLARSLLQSQ-QNSDEALNI-KRDADPTFDFIGYLETLPQTSGMYMGNAS 697
Query: 714 ---------LAKSYSEYREQELNYDRKRISTRTVTLNL 742
L +Y Y E R +S + L L
Sbjct: 698 IIPRNYRKYLYHAYLAYMEANG--YRNVLSLKMFGLGL 733
>gi|195957614|gb|ACG59723.1| nucleoside triphosphatase [Escherichia coli]
Length = 777
Score = 161 bits (408), Expect = 3e-37, Method: Composition-based stats.
Identities = 61/338 (18%), Positives = 113/338 (33%), Gaps = 36/338 (10%)
Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
R +G ++G+LD + G + ++ F + F +
Sbjct: 411 RRLIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVEGETLETHAPAFWRWLDRAAG 470
Query: 479 S-EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
E D + M L Q F+ + G GGSGKS + + G +A
Sbjct: 471 GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIET 530
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
+ R L G ++ + + E + A +K +TGGD ++ Y + Y
Sbjct: 531 LESPRER---------AALTGFSLIRLPD-QEKWSGDGAGLKAITGGDAVSVDPKYRDAY 580
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655
S + V N + + RR ++I F + IA RD K+ + +
Sbjct: 581 STHIPA-VILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITRELAVIV 639
Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID--DCCDIGENLWEESHS 713
+ K +++ L + +A ++ D +I + ++ + S
Sbjct: 640 RHLMQKFSDPMLARSLLQSQ-QNSDEALNI-KRDADPTFDFIGYLETLPQTSGMYMGNAS 697
Query: 714 ---------LAKSYSEYREQELNYDRKRISTRTVTLNL 742
L +Y Y E R +S + L L
Sbjct: 698 IIPRNYRKYLYHAYLAYMEANG--YRNVLSLKMFGLGL 733
>gi|170679915|ref|YP_001745974.1| D5 family nucleoside triphosphatase [Escherichia coli SMS-3-5]
gi|170517633|gb|ACB15811.1| nucleoside triphosphatase, D5 family [Escherichia coli SMS-3-5]
Length = 777
Score = 161 bits (408), Expect = 3e-37, Method: Composition-based stats.
Identities = 61/338 (18%), Positives = 113/338 (33%), Gaps = 36/338 (10%)
Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
R +G ++G+LD + G + ++ F + F +
Sbjct: 411 RRLIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVDGETLETHAPAFWRWLDRAAG 470
Query: 479 S-EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
E D + M L Q F+ + G GGSGKS + + G +A
Sbjct: 471 GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIET 530
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
+ R L G ++ + + E + A +K +TGGD ++ Y + Y
Sbjct: 531 LESPRER---------AALTGFSLIRLPD-QEKWSGDGAGLKAITGGDAVSVDPKYRDAY 580
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655
S + V N + + RR ++I F + IA RD K+ + +
Sbjct: 581 STHIPA-VILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITRELAVIV 639
Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID--DCCDIGENLWEESHS 713
+ K +++ L + +A ++ D +I + ++ + S
Sbjct: 640 RHLMQKFSDPMLARSLLQSQ-QNSDEALNI-KRDADPTFDFIGYLETLPQTSGMYMGNAS 697
Query: 714 ---------LAKSYSEYREQELNYDRKRISTRTVTLNL 742
L +Y Y E R +S + L L
Sbjct: 698 IIPRNYRKYLYHAYLAYMEANG--YRNVLSLKMFGLGL 733
>gi|191170424|ref|ZP_03031977.1| nucleoside triphosphatase, D5 family [Escherichia coli F11]
gi|300988773|ref|ZP_07178815.1| nucleoside triphosphatase, D5 family [Escherichia coli MS 200-1]
gi|190909232|gb|EDV68818.1| nucleoside triphosphatase, D5 family [Escherichia coli F11]
gi|300305841|gb|EFJ60361.1| nucleoside triphosphatase, D5 family [Escherichia coli MS 200-1]
gi|324012684|gb|EGB81903.1| nucleoside triphosphatase, D5 family [Escherichia coli MS 60-1]
Length = 777
Score = 161 bits (408), Expect = 3e-37, Method: Composition-based stats.
Identities = 61/338 (18%), Positives = 113/338 (33%), Gaps = 36/338 (10%)
Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
R +G ++G+LD + G + ++ F + F +
Sbjct: 411 RRLIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVEGETLETHAPAFWRWLDRAAG 470
Query: 479 S-EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
E D + M L Q F+ + G GGSGKS + + G +A
Sbjct: 471 GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIET 530
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
+ R L G ++ + + E + A +K +TGGD ++ Y + Y
Sbjct: 531 LESPRER---------AALTGFSLIRLPD-QEKWSGDGAGLKAITGGDAVSVDPKYRDAY 580
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655
S + V N + + RR ++I F + IA RD K+ + +
Sbjct: 581 STHIPA-VILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITRELAVIV 639
Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID--DCCDIGENLWEESHS 713
+ K +++ L + +A ++ D +I + ++ + S
Sbjct: 640 RHLMQKFSDPMLARSLLQSQ-QNSDEALNI-KRDADPTFDFIGYLETLPQTSGMYMGNAS 697
Query: 714 ---------LAKSYSEYREQELNYDRKRISTRTVTLNL 742
L +Y Y E R +S + L L
Sbjct: 698 IIPRNYRKYLYHAYLAYMEANG--YRNVLSLKMFGLGL 733
>gi|320193611|gb|EFW68246.1| DNA primase, phage-associated [Escherichia coli WV_060327]
Length = 777
Score = 161 bits (408), Expect = 3e-37, Method: Composition-based stats.
Identities = 61/338 (18%), Positives = 112/338 (33%), Gaps = 36/338 (10%)
Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
R +G ++G+LD + G ++ F + F +
Sbjct: 411 RRLIGFRNGVLDTQNGTFHPHRPSHWMRTLCDVDFTPPVDGETLETHAPAFWRWLDRAAG 470
Query: 479 S-EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
E D + M L Q F+ + G GGSGKS + + G +A
Sbjct: 471 GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIET 530
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
+ R L G ++ + + E + A +K +TGGD ++ Y + Y
Sbjct: 531 LESPRER---------AALTGFSLIRLPD-QEKWSGDGAGLKAITGGDAVSVDPKYRDAY 580
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655
S + V N + + RR ++I F + IA RD K+ + +
Sbjct: 581 STHIPA-VILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITRELAVIV 639
Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID--DCCDIGENLWEESHS 713
+ K +++ L + +A ++ D +I + ++ + S
Sbjct: 640 RHLMQKFSDPMLARSLLQSQ-QNSDEALNI-KRDADPTFDFIGYLETLPQTSGMYMGNAS 697
Query: 714 ---------LAKSYSEYREQELNYDRKRISTRTVTLNL 742
L +Y Y E R +S + L L
Sbjct: 698 IIPRNYRKYLYHAYLAYMEANG--YRNVLSLKMFGLGL 733
>gi|324115992|gb|EGC09918.1| poxvirus D5 protein [Escherichia coli E1167]
Length = 777
Score = 161 bits (408), Expect = 3e-37, Method: Composition-based stats.
Identities = 61/338 (18%), Positives = 113/338 (33%), Gaps = 36/338 (10%)
Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
R +G ++G+LD + G + ++ F + F +
Sbjct: 411 RRLIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVDGETLETHAPAFWRWLDRAAG 470
Query: 479 S-EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
E D + M L Q F+ + G GGSGKS + + G +A
Sbjct: 471 GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIET 530
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
+ R L G ++ + + E + A +K +TGGD ++ Y + Y
Sbjct: 531 LESPRER---------AALTGFSLIRLPD-QEKWSGDGAGLKAITGGDAVSVDPKYRDAY 580
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655
S + V N + + RR ++I F + IA RD K+ + +
Sbjct: 581 STHIPA-VILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITRELAVIV 639
Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID--DCCDIGENLWEESHS 713
+ K +++ L + +A ++ D +I + ++ + S
Sbjct: 640 RHLMQKFSDPMLARSLLQSQ-QNSDEALNI-KRDADPTFDFIGYLETLPQTSGMYMGNAS 697
Query: 714 ---------LAKSYSEYREQELNYDRKRISTRTVTLNL 742
L +Y Y E R +S + L L
Sbjct: 698 IIPRNYRKYLYHAYLAYMEANG--YRNVLSLKMFGLGL 733
>gi|320197261|gb|EFW71877.1| DNA primase, phage-associated [Escherichia coli WV_060327]
Length = 777
Score = 161 bits (408), Expect = 4e-37, Method: Composition-based stats.
Identities = 61/338 (18%), Positives = 113/338 (33%), Gaps = 36/338 (10%)
Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
R +G ++G+LD + G + ++ F + F +
Sbjct: 411 RRLIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVEGETLETHAPAFWRWLDRAAG 470
Query: 479 S-EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
E D + M L Q F+ + G GGSGKS + + G +A
Sbjct: 471 GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIET 530
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
+ R L G ++ + + E + A +K +TGGD ++ Y + Y
Sbjct: 531 LESPRER---------AALTGFSLIRLPD-QEKWSGDGAGLKAITGGDAVSVDPKYRDAY 580
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655
S + V N + + RR ++I F + IA RD K+ + +
Sbjct: 581 STHIPA-VILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITRELAVIV 639
Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID--DCCDIGENLWEESHS 713
+ K +++ L + +A ++ D +I + ++ + S
Sbjct: 640 RHLMQKFSDPMLARSLLQSQ-QNSDEALNI-KRDADPTFDFIGYLETLPQTSGMYMGNAS 697
Query: 714 ---------LAKSYSEYREQELNYDRKRISTRTVTLNL 742
L +Y Y E R +S + L L
Sbjct: 698 IIPRNYRKYLYHAYLAYMEANG--YRNVLSLKMFGLGL 733
>gi|254038870|ref|ZP_04872922.1| nucleoside triphosphatase [Escherichia sp. 1_1_43]
gi|226838835|gb|EEH70862.1| nucleoside triphosphatase [Escherichia sp. 1_1_43]
Length = 780
Score = 161 bits (408), Expect = 4e-37, Method: Composition-based stats.
Identities = 61/338 (18%), Positives = 113/338 (33%), Gaps = 36/338 (10%)
Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
R +G ++G+LD + G + ++ F + F +
Sbjct: 411 RRLIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVEGETLETHAPAFWRWLDRAAG 470
Query: 479 S-EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
E D + M L Q F+ + G GGSGKS + + G +A
Sbjct: 471 GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIET 530
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
+ R L G ++ + + E + A +K +TGGD ++ Y + Y
Sbjct: 531 LESPRER---------AALTGFSLIRLPD-QEKWSGDGAGLKAITGGDAVSVDPKYRDAY 580
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655
S + V N + + RR ++I F + IA RD K+ + +
Sbjct: 581 STHIPA-VILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITRELAVIV 639
Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID--DCCDIGENLWEESHS 713
+ K +++ L + +A ++ D +I + ++ + S
Sbjct: 640 RHLMQKFSDPMLARSLLQSQ-QNSDEALNI-KRDADPTFDFIGYLETLPQTSGMYMGNAS 697
Query: 714 ---------LAKSYSEYREQELNYDRKRISTRTVTLNL 742
L +Y Y E R +S + L L
Sbjct: 698 IIPRNYRKYLYHAYLAYMEANG--YRNVLSLKMFGLGL 733
>gi|331648374|ref|ZP_08349462.1| putative P4-specific DNA primase [Escherichia coli M605]
gi|331042121|gb|EGI14263.1| putative P4-specific DNA primase [Escherichia coli M605]
Length = 777
Score = 161 bits (408), Expect = 4e-37, Method: Composition-based stats.
Identities = 61/338 (18%), Positives = 113/338 (33%), Gaps = 36/338 (10%)
Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
R +G ++G+LD + G + ++ F + F +
Sbjct: 411 RRLIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVEGETLETHAPAFWRWLDRAAG 470
Query: 479 S-EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
E D + M L Q F+ + G GGSGKS + + G +A
Sbjct: 471 GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIET 530
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
+ R L G ++ + + E + A +K +TGGD ++ Y + Y
Sbjct: 531 LESPRER---------AALTGFSLIRLPD-QEKWSGDGAGLKAITGGDAVSVDPKYRDAY 580
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655
S + V N + + RR ++I F + IA RD K+ + +
Sbjct: 581 STHIPA-VILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITRELAVIV 639
Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID--DCCDIGENLWEESHS 713
+ K +++ L + +A ++ D +I + ++ + S
Sbjct: 640 RHLMQKFSDPMLARSLLQSQ-QNSDEALNI-KRDADPTFDFIGYLETLPQTSGMYMGNAS 697
Query: 714 ---------LAKSYSEYREQELNYDRKRISTRTVTLNL 742
L +Y Y E R +S + L L
Sbjct: 698 IIPRNYRKYLYHAYLAYMEANG--YRNVLSLKMFGLGL 733
>gi|168785548|ref|ZP_02810555.1| nucleoside triphosphatase, D5 family [Escherichia coli O157:H7 str.
EC869]
gi|189374573|gb|EDU92989.1| nucleoside triphosphatase, D5 family [Escherichia coli O157:H7 str.
EC869]
gi|195957495|gb|ACG59606.1| D5 family nucleoside triphosphatase [Escherichia coli O157:H7]
Length = 777
Score = 161 bits (408), Expect = 4e-37, Method: Composition-based stats.
Identities = 61/338 (18%), Positives = 113/338 (33%), Gaps = 36/338 (10%)
Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
R +G ++G+LD + G + ++ F + F +
Sbjct: 411 RRLIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVEGETLETHAPAFWRWLDRAAG 470
Query: 479 S-EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
E D + M L Q F+ + G GGSGKS + + G +A
Sbjct: 471 GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIET 530
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
+ R L G ++ + + E + A +K +TGGD ++ Y + Y
Sbjct: 531 LESPRER---------AALTGFSLIRLPD-QEKWSGDGAGLKAITGGDAVSVDPKYRDAY 580
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655
S + V N + + RR ++I F + IA RD K+ + +
Sbjct: 581 STHIPA-VILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITRELAVIV 639
Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID--DCCDIGENLWEESHS 713
+ K +++ L + +A ++ D +I + ++ + S
Sbjct: 640 RHLMQKFSDPMLARSLLQSQ-QNSDEALNI-KRDADPTFDFIGYLETLPQTSGMYMGNAS 697
Query: 714 ---------LAKSYSEYREQELNYDRKRISTRTVTLNL 742
L +Y Y E R +S + L L
Sbjct: 698 IIPRNYRKYLYHAYLAYMEANG--YRNVLSLKMFGLGL 733
>gi|170018102|ref|YP_001723056.1| P4 family phage/plasmid primase [Escherichia coli ATCC 8739]
gi|169753030|gb|ACA75729.1| phage/plasmid primase, P4 family [Escherichia coli ATCC 8739]
Length = 777
Score = 161 bits (408), Expect = 4e-37, Method: Composition-based stats.
Identities = 61/338 (18%), Positives = 113/338 (33%), Gaps = 36/338 (10%)
Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
R +G ++G+LD + G + ++ F + F +
Sbjct: 411 RRLIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVEGETLETHAPAFWRWLDRAAG 470
Query: 479 S-EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
E D + M L Q F+ + G GGSGKS + + G +A
Sbjct: 471 GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIET 530
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
+ R L G ++ + + E + A +K +TGGD ++ Y + Y
Sbjct: 531 LESPRER---------AALTGFSLIRLPD-QEKWSGDGAGLKAITGGDAVSVDPKYRDAY 580
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655
S + V N + + RR ++I F + IA RD K+ + +
Sbjct: 581 STHIPA-VILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITRELAVIV 639
Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID--DCCDIGENLWEESHS 713
+ K +++ L + +A ++ D +I + ++ + S
Sbjct: 640 RHLMQKFSDPMLARSLLQSQ-QNSDEALNI-KRDADPTFDFIGYLETLPQTSGMYMGNAS 697
Query: 714 ---------LAKSYSEYREQELNYDRKRISTRTVTLNL 742
L +Y Y E R +S + L L
Sbjct: 698 IIPRNYRKYLYHAYLAYMEANG--YRNVLSLKMFGLGL 733
>gi|9627512|ref|NP_042036.1| DNA primase [Enterobacteria phage P4]
gi|130905|sp|P10277|PRIM_BPP4 RecName: Full=Putative P4-specific DNA primase
gi|75895|pir||RPBPP4 DNA primase - satellite phage P4
gi|15152|emb|CAA29111.1| unnamed protein product [Enterobacteria phage P4]
gi|15158|emb|CAA35898.1| unnamed protein product [Enterobacteria phage P4]
Length = 777
Score = 161 bits (408), Expect = 4e-37, Method: Composition-based stats.
Identities = 61/338 (18%), Positives = 113/338 (33%), Gaps = 36/338 (10%)
Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
R +G ++G+LD + G + ++ F + F +
Sbjct: 411 RRLIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVDGETLETHAPAFWRWLDRAAG 470
Query: 479 S-EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
E D + M L Q F+ + G GGSGKS + + G +A
Sbjct: 471 GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIET 530
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
+ R L G ++ + + E + A +K +TGGD ++ Y + Y
Sbjct: 531 LESPRER---------AALTGFSLIRLPD-QEKWSGDGAGLKAITGGDAVSVDPKYRDAY 580
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655
S + V N + + RR ++I F + IA RD K+ + +
Sbjct: 581 STHIPA-VILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITRELAVIV 639
Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID--DCCDIGENLWEESHS 713
+ K +++ L + +A ++ D +I + ++ + S
Sbjct: 640 RHLMQKFSDPMLARSLLQSQ-QNSDEALNI-KRDADPTFDFIGYLETLPQTSGMYMGNAS 697
Query: 714 ---------LAKSYSEYREQELNYDRKRISTRTVTLNL 742
L +Y Y E R +S + L L
Sbjct: 698 IIPRNYRKYLYHAYLAYMEANG--YRNVLSLKMFGLGL 733
>gi|218547850|ref|YP_002381641.1| phage DNA primase [Escherichia fergusonii ATCC 35469]
gi|218355391|emb|CAQ88000.1| phage DNA primase [Escherichia fergusonii ATCC 35469]
Length = 777
Score = 161 bits (408), Expect = 4e-37, Method: Composition-based stats.
Identities = 61/338 (18%), Positives = 113/338 (33%), Gaps = 36/338 (10%)
Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
R +G ++G+LD + G + ++ F + F +
Sbjct: 411 RRLIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVDGETLETHAPAFWRWLDRAAG 470
Query: 479 S-EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
E D + M L Q F+ + G GGSGKS + + G +A
Sbjct: 471 GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIET 530
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
+ R L G ++ + + E + A +K +TGGD ++ Y + Y
Sbjct: 531 LESPRER---------AALTGFSLIRLPD-QEKWSGDGAGLKAITGGDAVSVDPKYRDAY 580
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655
S + V N + + RR ++I F + IA RD K+ + +
Sbjct: 581 STHIPA-VILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITRELAVIV 639
Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID--DCCDIGENLWEESHS 713
+ K +++ L + +A ++ D +I + ++ + S
Sbjct: 640 RHLMQKFSDPMLARSLLQSQ-QNSDEALNI-KRDADPTFDFIGYLETLPQTSGMYMGNAS 697
Query: 714 ---------LAKSYSEYREQELNYDRKRISTRTVTLNL 742
L +Y Y E R +S + L L
Sbjct: 698 IIPRNYRKYLYHAYLAYMEANG--YRNVLSLKMFGLGL 733
>gi|29143025|ref|NP_806367.1| hypothetical protein t2656 [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|29138658|gb|AAO70227.1| hypothetical protein t2656 [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
Length = 777
Score = 161 bits (408), Expect = 4e-37, Method: Composition-based stats.
Identities = 61/338 (18%), Positives = 113/338 (33%), Gaps = 36/338 (10%)
Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
R +G ++G+LD + G + ++ F + F +
Sbjct: 411 RRLIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVEGETLETHAPAFWRWLDRAAG 470
Query: 479 S-EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
E D + M L Q F+ + G GGSGKS + + G +A
Sbjct: 471 GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIET 530
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
+ R L G ++ + + E + A +K +TGGD ++ Y + Y
Sbjct: 531 LESPRER---------AALTGFSLIRLPD-QEKWSGDGAGLKAITGGDAVSVDPKYRDAY 580
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655
S + V N + + RR ++I F + IA RD K+ + +
Sbjct: 581 STHIPA-VILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITRELAVIV 639
Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID--DCCDIGENLWEESHS 713
+ K +++ L + +A ++ D +I + ++ + S
Sbjct: 640 RHLMQKFSDPMLARSLLQSQ-QNSDEALNI-KRDADPTFDFIGYLETLPQTSGMYMGNAS 697
Query: 714 ---------LAKSYSEYREQELNYDRKRISTRTVTLNL 742
L +Y Y E R +S + L L
Sbjct: 698 IIPRNYRKYLYHAYLAYMEANG--YRNVLSLKMFGLGL 733
>gi|323944124|gb|EGB40204.1| poxvirus D5 protein [Escherichia coli H120]
Length = 780
Score = 161 bits (407), Expect = 4e-37, Method: Composition-based stats.
Identities = 61/338 (18%), Positives = 113/338 (33%), Gaps = 36/338 (10%)
Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
R +G ++G+LD + G + ++ F + F +
Sbjct: 411 RRLIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVEGETLENHAPAFWRWLDRAAG 470
Query: 479 S-EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
E D + M L Q F+ + G GGSGKS + + G +A
Sbjct: 471 GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIET 530
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
+ R L G ++ + + E + A +K +TGGD ++ Y + Y
Sbjct: 531 LESPRER---------AALTGFSLIRLPD-QEKWSGDGAGLKAITGGDAVSVDPKYRDAY 580
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655
S + V N + + RR ++I F + IA RD K+ + +
Sbjct: 581 STHIPA-VILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITRELAVIV 639
Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID--DCCDIGENLWEESHS 713
+ K +++ L + +A ++ D +I + ++ + S
Sbjct: 640 RHLMQKFSDPMLARSLLQSQ-QNSDEALNI-KRDADPTFDFIGYLETLPQTSGMYMGNAS 697
Query: 714 ---------LAKSYSEYREQELNYDRKRISTRTVTLNL 742
L +Y Y E R +S + L L
Sbjct: 698 IIPRNYRKYLYHAYLAYMEANG--YRNVLSLKMFGLGL 733
>gi|193070938|ref|ZP_03051869.1| nucleoside triphosphatase, D5 family [Escherichia coli E110019]
gi|192955792|gb|EDV86264.1| nucleoside triphosphatase, D5 family [Escherichia coli E110019]
Length = 783
Score = 161 bits (407), Expect = 4e-37, Method: Composition-based stats.
Identities = 60/336 (17%), Positives = 112/336 (33%), Gaps = 36/336 (10%)
Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFES- 479
+G ++G+LD + G + ++ F + F +
Sbjct: 419 LIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVDGETLETHAPAFWRWLDRAAGGR 478
Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539
E D + M L Q F+ + G GGSGKS + + G +A +
Sbjct: 479 AEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIETLE 538
Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599
R L G ++ + + E + A +K +TGGD ++ Y + YS
Sbjct: 539 SPRER---------AALTGFSLIRLPD-QEKWSGDGAGLKAITGGDAVSVDPKYRDAYST 588
Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKK 657
+ V N + + RR ++I F + IA RD K+ + + +
Sbjct: 589 HIPA-VILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITRELAVIVRH 647
Query: 658 WFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID--DCCDIGENLWEESHS-- 713
K +++ L + +A ++ D +I + ++ + S
Sbjct: 648 LMQKFSDPMLARSLLQSQ-QNSDEALNI-KRDADPTFDFIGYLETLPQTSGMYMGNASII 705
Query: 714 -------LAKSYSEYREQELNYDRKRISTRTVTLNL 742
L +Y Y E R +S + L L
Sbjct: 706 PRNYRKYLYHAYLAYMEANG--YRNVLSLKMFGLGL 739
>gi|240119370|dbj|BAH79233.1| putative P4-specific DNA primase [Escherichia coli O157:H7]
Length = 777
Score = 161 bits (407), Expect = 4e-37, Method: Composition-based stats.
Identities = 60/336 (17%), Positives = 112/336 (33%), Gaps = 36/336 (10%)
Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFES- 479
+G ++G+LD + G + ++ F + F +
Sbjct: 413 LIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVEGETLETHAPAFWRWLDRAAGGR 472
Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539
E D + M L Q F+ + G GGSGKS + + G +A +
Sbjct: 473 AEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEHNATSATIETLE 532
Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599
R L G ++ + + E + A +K +TGGD ++ Y + YS
Sbjct: 533 SPRER---------AALTGFSLIRLPD-QEKWSGDGAGLKAITGGDAVSVDPKYRDAYST 582
Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKK 657
+ V N + + RR ++I F + IA RD K+ + + +
Sbjct: 583 HIPA-VILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITRELAVIVRH 641
Query: 658 WFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID--DCCDIGENLWEESHS-- 713
K +++ L + +A ++ D +I + ++ + S
Sbjct: 642 LMQKFSDPMLARSLLQSQ-QNSDEALNI-KRDADPTFDFIGYLETLPQTSGMYMGNASII 699
Query: 714 -------LAKSYSEYREQELNYDRKRISTRTVTLNL 742
L +Y Y E R +S + L L
Sbjct: 700 PRNYRKYLYHAYLAYMEANG--YRNVLSLKMFGLGL 733
>gi|168784927|ref|ZP_02809934.1| nucleoside triphosphatase, D5 family [Escherichia coli O157:H7 str.
EC869]
gi|189374731|gb|EDU93147.1| nucleoside triphosphatase, D5 family [Escherichia coli O157:H7 str.
EC869]
Length = 777
Score = 161 bits (407), Expect = 4e-37, Method: Composition-based stats.
Identities = 60/336 (17%), Positives = 112/336 (33%), Gaps = 36/336 (10%)
Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFES- 479
+G ++G+LD + G + ++ F + F +
Sbjct: 413 LIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVEGETLETHAPAFWRWLDRAAGGR 472
Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539
E D + M L Q F+ + G GGSGKS + + G +A +
Sbjct: 473 AEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIETLE 532
Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599
R L G ++ + + E + A +K +TGGD ++ Y + YS
Sbjct: 533 SPRER---------AALTGFSLIRLPD-QEKWSGDGAGLKAITGGDAVSVDPKYRDAYST 582
Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKK 657
+ V N + + RR ++I F + IA RD K+ + + +
Sbjct: 583 HIPA-VILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITRELAVIVRH 641
Query: 658 WFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID--DCCDIGENLWEESHS-- 713
K +++ L + +A ++ D +I + ++ + S
Sbjct: 642 LMQKFSDPMLARSLLQSQ-QNSDEALNI-KRDADPTFDFIGYLETLPQTSGMYMGNASII 699
Query: 714 -------LAKSYSEYREQELNYDRKRISTRTVTLNL 742
L +Y Y E R +S + L L
Sbjct: 700 PRNYRKYLYHAYLAYMEANG--YRNVLSLKMFGLGL 733
>gi|170019093|ref|YP_001724047.1| P4 family phage/plasmid primase [Escherichia coli ATCC 8739]
gi|169754021|gb|ACA76720.1| phage/plasmid primase, P4 family [Escherichia coli ATCC 8739]
Length = 777
Score = 161 bits (407), Expect = 4e-37, Method: Composition-based stats.
Identities = 60/336 (17%), Positives = 112/336 (33%), Gaps = 36/336 (10%)
Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFES- 479
+G ++G+LD + G + ++ F + F +
Sbjct: 413 LIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVEGETLETHAPAFWRWLDRAAGGR 472
Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539
E D + M L Q F+ + G GGSGKS + + G +A +
Sbjct: 473 AEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIETLE 532
Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599
R L G ++ + + E + A +K +TGGD ++ Y + YS
Sbjct: 533 SPRER---------AALTGFSLIRLPD-QEKWSGDGAGLKAITGGDAVSVDPKYRDAYST 582
Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKK 657
+ V N + + RR ++I F + IA RD K+ + + +
Sbjct: 583 HIPA-VILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITRELAVIVRH 641
Query: 658 WFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID--DCCDIGENLWEESHS-- 713
K +++ L + +A ++ D +I + ++ + S
Sbjct: 642 LMQKFSDPMLARSLLQSQ-QNSDEALNI-KRDADPTFDFIGYLETLPQTSGMYMGNASII 699
Query: 714 -------LAKSYSEYREQELNYDRKRISTRTVTLNL 742
L +Y Y E R +S + L L
Sbjct: 700 PRNYRKYLYHAYLAYMEANG--YRNVLSLKMFGLGL 733
>gi|313112558|ref|ZP_07798221.1| phage/plasmid primase, P4 family protein [Faecalibacterium cf.
prausnitzii KLE1255]
gi|295103823|emb|CBL01367.1| phage/plasmid primase, P4 family, C-terminal domain
[Faecalibacterium prausnitzii SL3/3]
gi|310625124|gb|EFQ08416.1| phage/plasmid primase, P4 family protein [Faecalibacterium cf.
prausnitzii KLE1255]
Length = 448
Score = 161 bits (407), Expect = 4e-37, Method: Composition-based stats.
Identities = 85/444 (19%), Positives = 160/444 (36%), Gaps = 29/444 (6%)
Query: 343 IWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKA 402
W + K+ + + K + L ++ D N + ++ ++ A
Sbjct: 26 PWVDSKGKVRETAYCQYLLEKHPMMCLKQKLFDQNGEVDEDALLYEVHSDLRDFVLDNLA 85
Query: 403 KSTAQSLEAGSIFSITSD---LLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTP 459
K Q L+A I + T + LD + Q+G L+ V P KEL + +
Sbjct: 86 KKEKQVLDALRIETYTPEWKPQLDR----IHLQNGTYFLDERGFV-PEKELCLNR-LPVE 139
Query: 460 FVEGEPSQ-EFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLM 518
+ P+ ++L+ + G E+++ +G L+ KAQ+ + + G GG GKS +
Sbjct: 140 YQPDAPAPTKWLEFLDGLLIPEDILT-LQEYLGYLLIPSTKAQKMLVMTGKGGEGKSRIG 198
Query: 519 NLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKI 578
L+K FG + + I NR L +++ + N I
Sbjct: 199 LLLKKLFG-EASHSESILRIETNRFAS--------ANLEYKLVMVDDDLNMVALPETRNI 249
Query: 579 KQM-TGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF-DKPI 636
K + T D + + + D +WRR I+I D+
Sbjct: 250 KSIVTAEDRLCIERKNKQAVQGLLYVRFICFGNGNLVAAHDDSDGFWRRQILITVKDRDP 309
Query: 637 ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAW 696
A D F + ++ W L+G+ ++ I E ++ E +D +
Sbjct: 310 ARVDNPFLIEELSEERPGILLWMLEGLHRLLANRYQFTISERSIQNLEAAMADSDNLTQF 369
Query: 697 ID--DCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
+ + E S L ++Y+++ E L + LK G G +
Sbjct: 370 MQATAYVRFKPDTEERSTYLYRAYTKWCEDNLESPVPQKKFSQFL--LKNAGKYGLTFSK 427
Query: 755 KIEKEWKSKRIIKGLKLKPAFESV 778
IE ++ R +G+ + PAF +
Sbjct: 428 HIEGKY---RGFRGVCVHPAFAAA 448
>gi|256021327|ref|ZP_05435192.1| P4 family phage/plasmid primase [Shigella sp. D9]
gi|332282561|ref|ZP_08394974.1| DNA primase [Shigella sp. D9]
gi|332104913|gb|EGJ08259.1| DNA primase [Shigella sp. D9]
Length = 777
Score = 161 bits (407), Expect = 4e-37, Method: Composition-based stats.
Identities = 60/336 (17%), Positives = 112/336 (33%), Gaps = 36/336 (10%)
Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFES- 479
+G ++G+LD + G + ++ F + F +
Sbjct: 413 LIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVDGETLETHAPAFWRWLDRAAGGR 472
Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539
E D + M L Q F+ + G GGSGKS + + G +A +
Sbjct: 473 AEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIETLE 532
Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599
R L G ++ + + E + A +K +TGGD ++ Y + YS
Sbjct: 533 SPRER---------AALTGFSLIRLPD-QEKWSGDGAGLKAITGGDAVSVDPKYRDAYST 582
Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKK 657
+ V N + + RR ++I F + IA RD K+ + + +
Sbjct: 583 HIPA-VILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITRELAVIVRH 641
Query: 658 WFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID--DCCDIGENLWEESHS-- 713
K +++ L + +A ++ D +I + ++ + S
Sbjct: 642 LMQKFSDPMLARSLLQSQ-QNSDEALNI-KRDADPTFDFIGYLETLPQTSGMYMGNASII 699
Query: 714 -------LAKSYSEYREQELNYDRKRISTRTVTLNL 742
L +Y Y E R +S + L L
Sbjct: 700 PRNYRKYLYHAYLAYMEANG--YRNVLSLKMFGLGL 733
>gi|315296958|gb|EFU56238.1| nucleoside triphosphatase, D5 family [Escherichia coli MS 16-3]
Length = 687
Score = 161 bits (407), Expect = 5e-37, Method: Composition-based stats.
Identities = 61/338 (18%), Positives = 113/338 (33%), Gaps = 36/338 (10%)
Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
R +G ++G+LD + G + ++ F + F +
Sbjct: 321 RRLIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVDGETLETHAPAFWRWLDRAAG 380
Query: 479 S-EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
E D + M L Q F+ + G GGSGKS + + G +A
Sbjct: 381 GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIET 440
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
+ R L G ++ + + E + A +K +TGGD ++ Y + Y
Sbjct: 441 LESPRER---------AALTGFSLIRLPD-QEKWSGDGAGLKAITGGDAVSVDPKYRDAY 490
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655
S + V N + + RR ++I F + IA RD K+ + +
Sbjct: 491 STHIPA-VILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITRELAVIV 549
Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID--DCCDIGENLWEESHS 713
+ K +++ L + +A ++ D +I + ++ + S
Sbjct: 550 RHLMQKFSDPMLARSLLQSQ-QNSDEALNI-KRDADPTFDFIGYLETLPQTSGMYMGNAS 607
Query: 714 ---------LAKSYSEYREQELNYDRKRISTRTVTLNL 742
L +Y Y E R +S + L L
Sbjct: 608 IIPRNYRKYLYHAYLAYMEANG--YRNVLSLKMFGLGL 643
>gi|293415902|ref|ZP_06658542.1| DNA primase [Escherichia coli B185]
gi|291432091|gb|EFF05073.1| DNA primase [Escherichia coli B185]
Length = 777
Score = 161 bits (407), Expect = 5e-37, Method: Composition-based stats.
Identities = 60/336 (17%), Positives = 112/336 (33%), Gaps = 36/336 (10%)
Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFES- 479
+G ++G+LD + G + ++ F + F +
Sbjct: 413 LIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVEGETLETHAPAFWRWLDRAAGGR 472
Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539
E D + M L Q F+ + G GGSGKS + + G +A +
Sbjct: 473 AEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIETLE 532
Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599
R L G ++ + + E + A +K +TGGD ++ Y + YS
Sbjct: 533 SPRER---------AALTGFSLIRLPD-QEKWSGDGAGLKAITGGDAVSVDPKYRDAYST 582
Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKK 657
+ V N + + RR ++I F + IA RD K+ + + +
Sbjct: 583 HIPA-VILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITRELAVIVRH 641
Query: 658 WFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID--DCCDIGENLWEESHS-- 713
K +++ L + +A ++ D +I + ++ + S
Sbjct: 642 LMQKFSDPMLARSLLQSQ-QNSDEALNI-KRDADPTFDFIGYLETLPQTSGMYMGNASII 699
Query: 714 -------LAKSYSEYREQELNYDRKRISTRTVTLNL 742
L +Y Y E R +S + L L
Sbjct: 700 PRNYRKYLYHAYLAYMEANG--YRNVLSLKMFGLGL 733
>gi|21282480|ref|NP_645568.1| putative primase [Staphylococcus aureus subsp. aureus MW2]
gi|300912574|ref|ZP_07130017.1| DNA primase domain protein [Staphylococcus aureus subsp. aureus
TCH70]
gi|21203917|dbj|BAB94616.1| putative primase [Staphylococcus aureus subsp. aureus MW2]
gi|300886820|gb|EFK82022.1| DNA primase domain protein [Staphylococcus aureus subsp. aureus
TCH70]
Length = 790
Score = 161 bits (407), Expect = 5e-37, Method: Composition-based stats.
Identities = 55/357 (15%), Positives = 125/357 (35%), Gaps = 38/357 (10%)
Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE--------FLDLVSGYF 477
+ ++G+ + +T Q T + T T +V + E +++ ++
Sbjct: 427 PYLIPVKNGVFNRKTKQLESFTPDCIFTTKIDTSYVRQDIVPEINGWNIDRWIEEIA--C 484
Query: 478 ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
+V+ + + ++ G ++ I + G G +GK T L+ G + + + ++
Sbjct: 485 NDNQVVKLLWQVINDSMNGNYTRKKAIFLVGNGNNGKGTFQELLSNVIGYSNIASLKVNE 544
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA-AKIKQMTGGDCMTARLNYGNT 596
+ L L G VI + ++ + K + GD +
Sbjct: 545 FDE---------RFKLSVLEGKTAVIGDDVPVGVYVDDSSNFKSVVTGDPVLVEFKNKPL 595
Query: 597 YSESPASFTPFIV--PNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLE 654
Y A+F ++ N ++ RR +++PF+ +F K + +
Sbjct: 596 YR---ATFKCTVIQSTNGMPKFKDKTGGTLRRLLIVPFNANFNGIKENFKIKEDYIKNPQ 652
Query: 655 AKKWFLKGVKAYISKGLD---VDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEES 711
++ L Y + LD DIP+ K E ++ D + + D
Sbjct: 653 VLEYVL-----YKAINLDFETFDIPDASEKMLEVFKEDNDPVYGFKVNMFDQWTIRKVPK 707
Query: 712 HSLAKSYSEYREQELNYDRKRISTRTVTLNLKQ--KGFIGGIKREKIEKEWKSKRII 766
+ + Y EY ++ +S+ + + + + + + E +KRI
Sbjct: 708 YIVYAFYKEYCDENG---YNALSSNKFYKQFEHYLENYWKTDAQRRYDNEELAKRIY 761
>gi|258510492|ref|YP_003183926.1| ATPase-like protein [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
gi|257477218|gb|ACV57537.1| ATPase-like protein [Alicyclobacillus acidocaldarius subsp.
acidocaldarius DSM 446]
Length = 1039
Score = 161 bits (406), Expect = 6e-37, Method: Composition-based stats.
Identities = 74/434 (17%), Positives = 157/434 (36%), Gaps = 47/434 (10%)
Query: 364 EDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDL-L 422
+D D + + + ++ + + T R + ++ + Q + S+ SI
Sbjct: 572 DDGEDEAVIRDFILEALETLKPTWATWSRAEEIKR--MLINNVQRDKDHSVESIRVHEVW 629
Query: 423 DSSSRFLGEQDGILDL-----ETGQKVKPTKELYITKSTGTPFVEGE--PSQEF------ 469
++ + +G+LD+ + + + I PF E + +
Sbjct: 630 NTEP-LVPFANGLLDMSDPFDHDWRVYDFSPKHRINWKLTIPFFENWHRTPKSWTLAMKD 688
Query: 470 -----LDLVSGYFESEEVMDYFTRCVGMALLG-GNKAQRFIHIRGVGGSGKSTLMNLIKY 523
LD F +E +G L + + + G G +GKSTL+ ++
Sbjct: 689 AEVDVLDFFRTTFPDDETRRSILEFLGYCLCRWDQSEECYAILYGPGQNGKSTLLGMLAK 748
Query: 524 AFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTG 583
AFG Y + + +NR A L + I I+ + + + +K G
Sbjct: 749 AFG-VYAVTESVQSLERNRFASAC--------LTRAAIDIVPDMAGTGIEDTSFLKGWIG 799
Query: 584 GDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASF 643
D + A + ++ P + N+ ++P ++RR ++ P + + +
Sbjct: 800 NDVVRAERKFKASFEFKPQT-KLIYGANELPPTKDPTHGYFRRILLYPMMERFKRQGPGW 858
Query: 644 AQKLETKYTLEAKKWFLKGVKAY---ISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD- 699
++L T L + G+ Y +G ++ + L+ K+ + D +A ID+
Sbjct: 859 VERLRTPEALSYMCYL--GLLHYRQMRREGRNITESKEMLREKDFYWRANDLVKAAIDEG 916
Query: 700 CCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKE 759
++G++ L K+ Y ++ RK + L+ K +
Sbjct: 917 IIELGKDYSVPRDLLQKAMEIYAKETG---RKYPGAAKLLERLRN---YAPHKIDYSRPR 970
Query: 760 WKSKRI--IKGLKL 771
WK RI G++L
Sbjct: 971 WKGGRIHVWTGVRL 984
>gi|331671414|ref|ZP_08372212.1| putative P4-specific DNA primase [Escherichia coli TA280]
gi|331071259|gb|EGI42616.1| putative P4-specific DNA primase [Escherichia coli TA280]
Length = 777
Score = 161 bits (406), Expect = 6e-37, Method: Composition-based stats.
Identities = 61/338 (18%), Positives = 113/338 (33%), Gaps = 36/338 (10%)
Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
R +G ++G+LD + G + ++ F + F +
Sbjct: 411 RRLIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVDGETLETHAPAFWRWLDRAAG 470
Query: 479 S-EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
E D + M L Q F+ + G GGSGKS + + G +A
Sbjct: 471 GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIET 530
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
+ R L G ++ + + E + A +K +TGGD ++ Y + Y
Sbjct: 531 LESPRER---------AALTGFSLIRLPD-QEKWSGDGAGLKAITGGDAVSVDPKYRDAY 580
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655
S + V N + + RR ++I F + IA RD K+ + +
Sbjct: 581 STHIPA-VILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITHELAVIV 639
Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID--DCCDIGENLWEESHS 713
+ K +++ L + +A ++ D +I + ++ + S
Sbjct: 640 RHLMQKFSDPMLARSLLQSQ-QNSDEALNI-KRDADPTFDFIGYLETLPQTSGMYMGNAS 697
Query: 714 ---------LAKSYSEYREQELNYDRKRISTRTVTLNL 742
L +Y Y E R +S + L L
Sbjct: 698 IIPRNYRKYLYHAYLAYMEANG--YRNVLSLKMFGLGL 733
>gi|320140806|gb|EFW32654.1| nucleoside triphosphatase, D5 family [Staphylococcus aureus subsp.
aureus MRSA131]
Length = 678
Score = 161 bits (406), Expect = 6e-37, Method: Composition-based stats.
Identities = 55/357 (15%), Positives = 124/357 (34%), Gaps = 38/357 (10%)
Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE--------FLDLVSGYF 477
+ ++G+ + +T Q T + T T +V + E +++ ++
Sbjct: 315 PYLIPVKNGVFNRKTKQLESFTPDYIFTSKIDTSYVRQDIVPEINGWNIDRWIEEIA--C 372
Query: 478 ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
+V+ + + ++ G ++ I G G +GK T L+ G + + + ++
Sbjct: 373 NDNQVVKLLWQVINDSMNGNYTRKKAIFFVGDGNNGKGTFQELLSNVIGYSNIASLKVNE 432
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA-AKIKQMTGGDCMTARLNYGNT 596
+ L L G VI + ++ + K + GD +
Sbjct: 433 FDE---------RFKLSVLEGKTAVIGDDVPVGVYVDDSSNFKSVVTGDPVLVEFKNKPL 483
Query: 597 YSESPASFTPFIV--PNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLE 654
Y A+F ++ N ++ RR +++PF+ +F K + +
Sbjct: 484 YR---ATFKCTVIQSTNGMPKFKDKTGGTLRRLLIVPFNANFNGIKENFKIKEDYIKNQQ 540
Query: 655 AKKWFLKGVKAYISKGLD---VDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEES 711
++ L Y + LD DIP+ K E ++ D + + D
Sbjct: 541 VLEYVL-----YKAINLDFETFDIPDASKKMLEVFKEDNDPVYGFKVNMFDQWTIRKVPK 595
Query: 712 HSLAKSYSEYREQELNYDRKRISTRTVTLNLKQ--KGFIGGIKREKIEKEWKSKRII 766
+ + Y EY ++ +S+ + + + + + + E +KRI
Sbjct: 596 YIVYAFYKEYCDENG---YNALSSNKFYKQFEHYLENYWKTDAQRRYDNEELAKRIY 649
>gi|161598668|ref|YP_001569030.1| hypothetical protein pSSVx_p9 [Sulfolobus islandicus]
Length = 892
Score = 161 bits (406), Expect = 6e-37, Method: Composition-based stats.
Identities = 118/858 (13%), Positives = 265/858 (30%), Gaps = 137/858 (15%)
Query: 8 EQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLS-------SEKIDKLPACGFGFVCGV 60
+ A+ ++NGF + P+ K+P + +W++ +E + + + +
Sbjct: 6 QYAQWFVNNGFAIFPIDKETKKPV-ISEWQKYSREKLTEEEKAEFLKMIGEQNYNYAIPG 64
Query: 61 GEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIP-----FRMNKEGIKK 115
G++ L D + + + L + Q P + + + +
Sbjct: 65 GQKGLVVLDFEDLQLLKQWISEPALDDLCKQTLCV--QTPHGGLHIFVISYEIPEHKFNP 122
Query: 116 KKTTESTQGHLDILGCGQYFVAYNI---H--------PKTKKEYTWTTPPHRFKVEDTPL 164
T + +G +D+ Y + H P+ +++T + ++ P+
Sbjct: 123 AFTL-NGKGIVDLQSYNSYVLGVGSCINHKYCESPKCPRRGQDHTTCYTLYNNEL--VPI 179
Query: 165 L-SEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYN 223
+ + ++ K+ EI + +K W E
Sbjct: 180 VETVRGLKEFLKWLDEIAKQKKLGIELSPSAKEWVYGKTEAVEEEEFKKLKED------- 232
Query: 224 GSHDEWIPVVMAVHHETRG---SSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDT 280
MA +++ +G + +E+ + K E+ + KW I
Sbjct: 233 ----------MAKYNKFKGKTVEAVREEVCKEMKKSNEELKEK--SQKWKAIYNTAIPVI 280
Query: 281 AKKRSTFTSLFYHH--------GKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADT-- 330
+S +T L L G+ D A +Y Y T
Sbjct: 281 CDSKS-YTQLGIDRSRGDWRVFRALFTHGVADLDVVDKLLPADSKVYSPKWNRYMIHTIA 339
Query: 331 KAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPE---------------- 374
KAW K K + K + + + +
Sbjct: 340 KAW-KYSKPALKFQKEAQGKNEKEAKKIARKIITEAVLERYKIKAFYQVTGHNQAIVGTF 398
Query: 375 --DNNKN-----SKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDL----LD 423
D K K R ++ K + + I DL +
Sbjct: 399 VWDKKKGIYVPFDKGLRKVIRKLAESLQIKSRDKTLARLSKRDVDDIVDEIKDLKLTPIP 458
Query: 424 SSSRFLGEQDGILD--LETGQKVKPTKELYITKSTG--TPFVEGEP-----SQEFLDLVS 474
+ + ++ ++ ++ + T + Y + E QE +L
Sbjct: 459 AEPLRVAFKNVTIEWAIKANILHRKTPKQYSFYYLPWTVNYEEFNKMKSLSIQEIEELAK 518
Query: 475 GYFESEEVMDY----------FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524
+ + + + +G L G K ++ + G G +GKS+ +NL+K
Sbjct: 519 RLCP-KSLETFKSWVGVKWILLFQIIGYTLYPGIKFRKAFMLVGEGKNGKSSFINLVKKV 577
Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGG 584
G+ Y ++ ++ R + L ++E+ + + ++K++TG
Sbjct: 578 LGD-YAVSISPRELFDPRN------RFIVGNLYHKLANAVAESKDYSIDDMDRVKRLTGD 630
Query: 585 DCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNP-DDAWWRRYIVIPFDKPIANRDASF 643
D +TA + + + + + I N VR+ D A+W R++++ F + D+ F
Sbjct: 631 DWITADVKFKDPITFKSVA-KLIIASNNMPHVRDTNDRAFWHRWVIVEFPHQFKDNDSWF 689
Query: 644 AQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDI 703
+ + + + ++G VD + + D+ +I +
Sbjct: 690 DKTFTEEEINGIITTAIASISRAFAQGH-VDFEQSEEEVMGIWLSHIDSVYNFIKTYVEK 748
Query: 704 GE--------NLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755
G +LW L Y Y ++ + ++ + L++
Sbjct: 749 GTIRLDPKNGDLWVPKDQLYNLYQNYCIEQGFRG---VGRKSFSRKLRE-----YFGITV 800
Query: 756 IEKEWKSKRIIKGLKLKP 773
+K + R G+ + P
Sbjct: 801 SQKGAERDRAFVGIAVDP 818
>gi|309812094|ref|ZP_07705854.1| D5-like protein [Dermacoccus sp. Ellin185]
gi|308433973|gb|EFP57845.1| D5-like protein [Dermacoccus sp. Ellin185]
Length = 875
Score = 161 bits (406), Expect = 6e-37, Method: Composition-based stats.
Identities = 110/676 (16%), Positives = 220/676 (32%), Gaps = 111/676 (16%)
Query: 198 TNNNNRQYTNREITAFLSCFGEEFYNGS-----HDEWIPVVMAVHHETR---GSSKGKEI 249
R+ + E F + G D + + V R G +G+E
Sbjct: 205 EELRPRRDDDPEARVFHPSLEAFTWKGRDVVIAFDGDVMIKPQVKEACRRLAGLLEGRE- 263
Query: 250 ARRW-----SKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLA 304
AR W + + ++ + +E DT + + + A
Sbjct: 264 ARVWFAHLPTTLPGSDNKCGIDDFLAELGPKEFVDTIRDYAPGEPTLLRQALMQGHDADA 323
Query: 305 SRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDK----------NNVYIWSLTLDKITAS 354
+ +A + + + AD K W +++ W L +
Sbjct: 324 D-----WAEAWVANRAARYARWVADMKTWMVWRAPIWEPCGVPLSHLSSWLLDEARRIEP 378
Query: 355 IMNFLVS----MKEDVFDLSEEPEDNNKNSKSPRFWFN-----------TDYRRQNVEEN 399
+ L ++E + L EE +K+ + RR V+
Sbjct: 379 EVGVLNEEIEPLEEQIAALKEEQSAYDKDDDEWKELAAEVGKLTHEINGKSARRDAVKRI 438
Query: 400 SKA-----------KSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDL----ETG--Q 442
K A + + S I + LD + + +G+L L E+G +
Sbjct: 439 EKTIRDARSRRRMEAIAAVAADLSSPMRIMTADLDPNPHAIPMSNGMLRLDDLDESGAPR 498
Query: 443 KVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLG-GNKAQ 501
V E+ T G + E + LD + E + VG LLG +
Sbjct: 499 LVPHAPEMLSTIKPGCEWRGLEATSPLLDALLEALPDFETRTFLQWIVGADLLGTSTSYR 558
Query: 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRI 561
+ + G +GK+ LM+ I AFG+ + E G +P ++L G R+
Sbjct: 559 WLVQLVGPESNGKTLLMDAIHGAFGD----SVRLLTDEVLGGTEPGAPSPGQMKLRGCRL 614
Query: 562 VIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDD 621
+ E D I A ++K++ G ++AR + A+ + ++ N + + D
Sbjct: 615 GYLEEVP-GDIIRAHQLKRLVGTPTLSARELH-KGLVTWRATHSLMLITNDVVQIAGGDA 672
Query: 622 AWWRRYIVIPFDKPIAN---------------RDASFAQKLETKYT---LEAKKWFLKGV 663
A + R ++ F + R+ + A ++++ W ++G
Sbjct: 673 AAYGRVQLLKFPFTFTDDPTLLEMGEQSGYRPRNPALAAAVKSREPDLMAAVAAWAVRGS 732
Query: 664 KAYIS-----------KGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDI--GENLWEE 710
Y++ +GL + +P + R D + + + ++ +
Sbjct: 733 LDYLAAQEDPERRQLGRGLGMPLPREVERETSRWRGDVDAAAS-LAEYLEVTGDPTHFLP 791
Query: 711 SHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK-GFIGGIKREKIEK-------EWKS 762
+ L ++ +Q R S RTV + + + R + + +S
Sbjct: 792 NDDLKILWTFTSDQTG---RSAPSARTVNDRVSKAEPLRSALARGDVTRPNSPRKVGGRS 848
Query: 763 KRIIKGLKLKPAFESV 778
R G++L A +V
Sbjct: 849 VRGWAGVRLTAAGHAV 864
>gi|319891793|ref|YP_004148668.1| Putative primase, superantigen-encoding pathogenicity islands SaPI
[Staphylococcus pseudintermedius HKU10-03]
gi|317161489|gb|ADV05032.1| Putative primase, superantigen-encoding pathogenicity islands SaPI
[Staphylococcus pseudintermedius HKU10-03]
Length = 789
Score = 161 bits (406), Expect = 6e-37, Method: Composition-based stats.
Identities = 86/609 (14%), Positives = 200/609 (32%), Gaps = 79/609 (12%)
Query: 187 DKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIP-----VVMAVHHE-- 239
+ + + + ++ + N + + + G ++++ V +H+
Sbjct: 192 EATTTNNHNSESQLSDEEVINIMLKSKQKDKISDLLQGDYEQYFASPSEAVQSLLHYLAF 251
Query: 240 TRGSSKG--KEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKL 297
G +K + I ++ ++ + N W + E + ++
Sbjct: 252 YTGKNKAQMERIFLTYNNLTDKWNSKRGNSTWGELELE-------------KAIANQKEV 298
Query: 298 IPKGL--LASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASI 355
KG+ SD + + K W ++ + ++ ++ +
Sbjct: 299 YQKGINDFEVILSDKESVRKMLSKVGDDER-SYMEKLWIEEGEKGRKPTVISPNRCAHLL 357
Query: 356 MNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVE----ENSKAKSTAQSLEA 411
++K +FDL E + ++ + N Y ++ + + + K+
Sbjct: 358 KE---NLKFILFDLEENTKLAMYRAEEGIYTQNVSYIKRVISWLEPKLNSNKADEVIYHL 414
Query: 412 GSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITK--------STGTPFVEG 463
+ I S +S + ++G+ + +T Q T E T +G P +EG
Sbjct: 415 KNRVDIKSKT--NSPDLIPVKNGVFNRKTKQLEPFTPEYVFTTKINTAYKTQSGVPVIEG 472
Query: 464 EPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKY 523
+++ ++ V + + +L G ++ I + G G +GK T LI
Sbjct: 473 WSVDNWINEIA--CNDHGVAKLLWQVINDSLNGNYTRKKAIFLVGDGNNGKGTFQELISQ 530
Query: 524 AFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA-AKIKQMT 582
G + + + + ++ + L L G VI + I+ + K +
Sbjct: 531 LIGAENIASLKVNEFDE---------RFKLSVLEGKTAVIGDDVPVGVYIDDSSNFKSVV 581
Query: 583 GGDCMTARLNYGNTYSESPASFTPFIV--PNKHLFVRNPDDAWWRRYIVIPFDKPIANRD 640
GD + Y A+F ++ N ++ RR +++PF+ +
Sbjct: 582 TGDPVLVEFKNQPLYR---ATFKCTVIQSTNGMPSFKDKTSGTLRRLLIVPFNANFNGQS 638
Query: 641 ASFAQKLETKYTLEAKKWFLKGVKAYISKGLD---VDIPEVCLKAKEEERQGTDTYQAW- 696
+F K + + ++ L Y S +D DIPE + +Q D +
Sbjct: 639 ENFNIKEQYVKNQKVLEYVL-----YRSINMDFDTFDIPEASNNMLDIYKQDNDPVYDFK 693
Query: 697 ---IDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKR 753
D+ + Y E+ E +S R + + G++G
Sbjct: 694 VNVFDEWVVK----TIPKKVVYYKYKEFCEHSGYTG--VLSDRKFYKSFE--GYLGEKWD 745
Query: 754 EKIEKEWKS 762
+ +
Sbjct: 746 TDDRGRFSN 754
>gi|253581967|ref|ZP_04859191.1| phage primase [Fusobacterium varium ATCC 27725]
gi|251836316|gb|EES64853.1| phage primase [Fusobacterium varium ATCC 27725]
Length = 667
Score = 161 bits (406), Expect = 7e-37, Method: Composition-based stats.
Identities = 60/356 (16%), Positives = 127/356 (35%), Gaps = 27/356 (7%)
Query: 398 ENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTG 457
++S K + L+ IT + ++ + ++GI ++ + + + + IT
Sbjct: 308 KDSNRKEVLKYLD-----LITEEKERDNTGLIAFKNGIYNILSDELLPFNPKYIITNKIP 362
Query: 458 TPFVEGEPSQEFLDLVSGYFESEEVMDYFT-RCVGMALLGGNKAQRFIHIRGVGGSGKST 516
+ S+ ++ + E + +G L N+ + I G +GKST
Sbjct: 363 WNYNLLAYSELMDTTLNKFAYGNENIRLLIDEVIGYILFAKNELGKAFIITGDKSNGKST 422
Query: 517 LMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAA 576
+ ++ Y G +DI+ +R + + G + I + A
Sbjct: 423 FLKILMYTVGKDNTSALSLNDIINSRFR--------VYEVAGKLLNIGDDIGSGYIPEAE 474
Query: 577 KIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI 636
+++ GD + A N + N +++P A RR I+IPF
Sbjct: 475 IFRKLVTGDIIVAEQKGKNPIKFN-CYAKFIFSANDIPRIKDPTGATARRIIIIPFKNSF 533
Query: 637 ANR----DASFAQKLETKYTLEAKKWFLKGV--KAYISKGLDVDIPEVCLKAKEEERQGT 690
+ D F K++T+ +E + G+ I + E + EE +
Sbjct: 534 TKKSKDYDPYFLDKIKTQECIEYL--IVIGIIGLKRIIQNKGFTETEETRQLLEEFNRNN 591
Query: 691 DTYQAWIDD-CCDIGENLWE-ESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQ 744
+ + I + GE + +L Y+ Y + + K ++ T +K+
Sbjct: 592 NPVLSIIAQLEDEKGEEFYIGMDKNL--VYNYYYSEAQSEGMKPVTLTNFTRTMKK 645
>gi|323181592|gb|EFZ67012.1| phage/plasmid primase, P4 family, C-terminal domain protein
[Escherichia coli 1357]
Length = 680
Score = 160 bits (405), Expect = 7e-37, Method: Composition-based stats.
Identities = 61/338 (18%), Positives = 113/338 (33%), Gaps = 36/338 (10%)
Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
R +G ++G+LD + G + ++ F + F +
Sbjct: 314 RRLIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVEGETLETHAPAFWRWLDRAAG 373
Query: 479 S-EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
E D + M L Q F+ + G GGSGKS + + G +A
Sbjct: 374 GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIET 433
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
+ R L G ++ + + E + A +K +TGGD ++ Y + Y
Sbjct: 434 LESPRER---------AALTGFSLIRLPD-QEKWSGDGAGLKAITGGDAVSVDPKYRDAY 483
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655
S + V N + + RR ++I F + IA RD K+ + +
Sbjct: 484 STHIPA-VILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITRELAVIV 542
Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID--DCCDIGENLWEESHS 713
+ K +++ L + +A ++ D +I + ++ + S
Sbjct: 543 RHLMQKFSDPMLARSLLQSQ-QNSDEALNI-KRDADPTFDFIGYLETLPQTSGMYMGNAS 600
Query: 714 ---------LAKSYSEYREQELNYDRKRISTRTVTLNL 742
L +Y Y E R +S + L L
Sbjct: 601 IIPRNYRKYLYHAYLAYMEANG--YRNVLSLKMFGLGL 636
>gi|301047471|ref|ZP_07194548.1| nucleoside triphosphatase, D5 family [Escherichia coli MS 185-1]
gi|300300586|gb|EFJ56971.1| nucleoside triphosphatase, D5 family [Escherichia coli MS 185-1]
Length = 680
Score = 160 bits (405), Expect = 7e-37, Method: Composition-based stats.
Identities = 62/341 (18%), Positives = 113/341 (33%), Gaps = 42/341 (12%)
Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
R +G ++G+LD + G + ++ F + F +
Sbjct: 314 RRLIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVEGETLENHAPAFWRWLDRAAG 373
Query: 479 S-EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
E D + M L Q F+ + G GGSGKS + + G +A
Sbjct: 374 GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIET 433
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
+ R L G ++ + + E + A +K +TGGD ++ Y + Y
Sbjct: 434 LESPRER---------AALTGFSLIRLPD-QEKWSGDGAGLKAITGGDAVSVDPKYRDAY 483
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655
S + V N + + RR ++I F + IA RD K+ + +
Sbjct: 484 STHIPA-VILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITRELAVIV 542
Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEER---QGTDTYQAWID--DCCDIGENLWEE 710
+ K +++ L + +E R + D +I + ++
Sbjct: 543 RHLMQKFSDPMLARSLLQS-----QQNSDEARNIKRDADPTFDFIGYLETLPQTSGMYMG 597
Query: 711 SHS---------LAKSYSEYREQELNYDRKRISTRTVTLNL 742
+ S L +Y Y E R +S + L L
Sbjct: 598 NASIIPRNYRKYLYHAYLAYMEANG--YRNVLSLKMFGLGL 636
>gi|87161639|ref|YP_493509.1| putative DNA primase [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|161509102|ref|YP_001574761.1| DNA primase [Staphylococcus aureus subsp. aureus USA300_TCH1516]
gi|294850177|ref|ZP_06790913.1| primase [Staphylococcus aureus A9754]
gi|87127613|gb|ABD22127.1| putative DNA primase [Staphylococcus aureus subsp. aureus
USA300_FPR3757]
gi|160367911|gb|ABX28882.1| possible DNA primase [Staphylococcus aureus subsp. aureus
USA300_TCH1516]
gi|294822951|gb|EFG39384.1| primase [Staphylococcus aureus A9754]
gi|315197253|gb|EFU27591.1| possible DNA primase [Staphylococcus aureus subsp. aureus CGS01]
gi|320142978|gb|EFW34770.1| nucleoside triphosphatase, D5 family [Staphylococcus aureus subsp.
aureus MRSA177]
Length = 790
Score = 160 bits (405), Expect = 7e-37, Method: Composition-based stats.
Identities = 55/357 (15%), Positives = 124/357 (34%), Gaps = 38/357 (10%)
Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE--------FLDLVSGYF 477
+ ++G+ + +T Q T + T T +V + E +++ ++
Sbjct: 427 PYLIPVKNGVFNRKTKQLESFTPDYIFTSKIDTSYVRQDIVPEINGWNIDRWIEEIA--C 484
Query: 478 ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
+V+ + + ++ G ++ I G G +GK T L+ G + + + ++
Sbjct: 485 NDNQVVKLLWQVINDSMNGNYTRKKAIFFVGDGNNGKGTFQELLSNVIGYSNIASLKVNE 544
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA-AKIKQMTGGDCMTARLNYGNT 596
+ L L G VI + ++ + K + GD +
Sbjct: 545 FDE---------RFKLSVLEGKTAVIGDDVPVGVYVDDSSNFKSVVTGDPVLVEFKNKPL 595
Query: 597 YSESPASFTPFIV--PNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLE 654
Y A+F ++ N ++ RR +++PF+ +F K + +
Sbjct: 596 YR---ATFKCTVIQSTNGMPKFKDKTGGTLRRLLIVPFNANFNGIKENFKIKEDYIKNQQ 652
Query: 655 AKKWFLKGVKAYISKGLD---VDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEES 711
++ L Y + LD DIP+ K E ++ D + + D
Sbjct: 653 VLEYVL-----YKAINLDFETFDIPDASKKMLEVFKEDNDPVYGFKVNMFDQWTIRKVPK 707
Query: 712 HSLAKSYSEYREQELNYDRKRISTRTVTLNLKQ--KGFIGGIKREKIEKEWKSKRII 766
+ + Y EY ++ +S+ + + + + + + E +KRI
Sbjct: 708 YIVYAFYKEYCDENG---YNALSSNKFYKQFEHYLENYWKTDAQRRYDNEELAKRIY 761
>gi|324111267|gb|EGC05249.1| poxvirus D5 protein [Escherichia fergusonii B253]
Length = 777
Score = 160 bits (405), Expect = 8e-37, Method: Composition-based stats.
Identities = 61/338 (18%), Positives = 113/338 (33%), Gaps = 36/338 (10%)
Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
R +G ++G+LD + G + ++ F + F +
Sbjct: 411 RRLIGFRNGVLDTQNGTFHPHSPLHWMRTLCDVDFTPPVDGETLETHAPAFWRWLDRAAG 470
Query: 479 S-EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
E D + M L Q F+ + G GGSGKS + + G +A
Sbjct: 471 GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIET 530
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
+ R L G ++ + + E + A +K +TGGD ++ Y + Y
Sbjct: 531 LESPRER---------AALTGFSLIRLPD-QEKWSGDGAGLKAITGGDAVSVDPKYRDAY 580
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655
S + V N + + RR ++I F + IA RD K+ + +
Sbjct: 581 STHIPA-VILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITRELAVIV 639
Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID--DCCDIGENLWEESHS 713
+ K +++ L + +A ++ D +I + ++ + S
Sbjct: 640 RHLMQKFSDPMLARSLLQSQ-QNSDEALNI-KRDADPTFDFIGYLETLPQTSGMYMGNAS 697
Query: 714 ---------LAKSYSEYREQELNYDRKRISTRTVTLNL 742
L +Y Y E R +S + L L
Sbjct: 698 IIPRNYRKYLYHAYLAYMEANG--YRNVLSLKMFGLGL 733
>gi|187935270|ref|YP_001884288.1| hypothetical protein CLL_A0034 [Clostridium botulinum B str. Eklund
17B]
gi|187723423|gb|ACD24644.1| hypothetical protein CLL_A0034 [Clostridium botulinum B str. Eklund
17B]
Length = 586
Score = 160 bits (405), Expect = 8e-37, Method: Composition-based stats.
Identities = 87/470 (18%), Positives = 170/470 (36%), Gaps = 27/470 (5%)
Query: 312 NKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSE 371
NK F Y G+F ++ K K N W + ++ N + F+L +
Sbjct: 120 NKKAFMSYIGGNFKALINSFNESKFVKWNGKAWIMLTEEEGKIEYNNFIKQCN--FELEK 177
Query: 372 EPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGE 431
+ K+ + + + + ++ L + + I + + L
Sbjct: 178 NINNLEKDDF-----YKLSKKINSWDNKNRVSEALDKLRRDNAYIINLKYHNKNENILCS 232
Query: 432 QDG-ILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF----LDLVSGYFESEEVMDYF 486
++G I+DL G+ K + I ++ ++ + S +F L L +E + ++
Sbjct: 233 KNGLIIDLNKGEIKKSCRNDLILNTSKYNLMDKKDSIKFVKDKLKLYKKVLGNERL-EFI 291
Query: 487 TRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEA 546
+ +LG N Q I + G G +GKST N++K F + +N +
Sbjct: 292 LDLISYKMLGKN-LQLAIFMIGAGATGKSTFKNIVKDLF-EENAVNIPYTYFTTKHKGND 349
Query: 547 GKANPS-LIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFT 605
+ L+ L + SE + D IN AK K + AR G
Sbjct: 350 DVSRDDLLVSLDNKSFGLSSEGDTTDIINQAKFKNILSNSSEKARATRGKLIDVDLQKLD 409
Query: 606 PFIVPNKHLFVRNPDDAWWRRYIVIPF--DKPIANRDASFAQKLETKYTLEAKKWFLKGV 663
I N N DDA RR + I F PI +R+ +F ++ + +F+
Sbjct: 410 LLIDTNDIPQFTNYDDAVNRRLLFIKFINKIPIESRNTNFYKEEIKENFDYLFSYFIYRA 469
Query: 664 KAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYRE 723
I+K L +P + + + D+ + ++ E+ + + K+Y + E
Sbjct: 470 MNLINKTLI--VPNIIKDDTMQNIKELDSLLKFSNEVIAPIEDFFVSCEEVEKAYIKMCE 527
Query: 724 QE-------LNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRII 766
+E + + L++K I+R + K+++
Sbjct: 528 EENLVNIIPGDLIGTAKGYSYLLNKLREKPGYENIERIRKSDGSKNRKCY 577
>gi|295104245|emb|CBL01789.1| phage/plasmid primase, P4 family, C-terminal domain
[Faecalibacterium prausnitzii SL3/3]
Length = 568
Score = 160 bits (404), Expect = 9e-37, Method: Composition-based stats.
Identities = 67/352 (19%), Positives = 133/352 (37%), Gaps = 20/352 (5%)
Query: 430 GEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVM-DYFTR 488
++GILDL + + + + Q F + + + ++ +
Sbjct: 229 PLENGILDLMEWKLYPHSPDQITFTCIKAKYDPQAKCQIFEEYLQRVTGGDSLLSERVWM 288
Query: 489 CVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGK 548
+G L+ + + FI ++G+G SGKS L + I+ + + + + M+N +
Sbjct: 289 AIGYLLIYPARGKFFIFMKGIGNSGKSVLGSFIRRLYPKESISSIRLKQ-MKNEFGMSSL 347
Query: 549 ANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFI 608
AN + + +++ DE A+++KQ+TGGD + + + +
Sbjct: 348 ANAVI------NFDMDMPSSKIDEEAASRLKQITGGDSINVPRKFRDD-ALLERRIKFVF 400
Query: 609 VPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDASFAQKLETKYTLEAKKWFLKGVKAY 666
N + + DDA +R I +PF+ I + +D K+ K L+ +
Sbjct: 401 SSNHPIIIDGEDDALLKRIIYLPFNYAIPDDQQDPDLGDKIW-KERDAIATKALRYARKL 459
Query: 667 ISKGLDVDIPEVCLKAKEEERQG-TDTYQAWIDDCCDIGENLWEESH-SLAKSYSEYREQ 724
+ AK R T ++ + CD E+ + L +YS+Y ++
Sbjct: 460 VKLNYIFPEIPQMDNAKCIVRDSIAKTVGKFVQESCDKSESKAVTATEDLYNAYSDYCKE 519
Query: 725 ELNYDRKRISTRTVTLNLKQKGFIGGIKR---EKIEKEWKSKRIIKGLKLKP 773
+ + S + T L Q R E + KG+KL+P
Sbjct: 520 KNMW---ACSQKAFTKELTQMKIEHTRFRCTGEDMIARKNPVSAFKGIKLRP 568
>gi|307828927|gb|ADN95149.1| primase-like protein [Staphylococcus aureus]
Length = 790
Score = 160 bits (404), Expect = 9e-37, Method: Composition-based stats.
Identities = 54/357 (15%), Positives = 125/357 (35%), Gaps = 38/357 (10%)
Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE--------FLDLVSGYF 477
+ ++G+ + +T Q T + T T +V + E +++ ++
Sbjct: 427 PYLIPVKNGVFNRKTKQLESFTPDYIFTSKIDTSYVRQDIVPEINGWNIDRWIEEIA--C 484
Query: 478 ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
+V+ + + ++ G ++ + + G G +GK T L+ G + + + ++
Sbjct: 485 NDNQVVKLLWQVINDSMNGNYTRKKALFLVGNGNNGKGTFQELLSNVIGYSNIASLKVNE 544
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA-AKIKQMTGGDCMTARLNYGNT 596
+ L L G VI + ++ + K + GD +
Sbjct: 545 FDE---------RFKLSVLEGKTAVIGGDVPVGVYVDDSSNFKSVVTGDPVLVEFKNKPL 595
Query: 597 YSESPASFTPFIV--PNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLE 654
Y A+F ++ N ++ RR +++PF+ +F K + +
Sbjct: 596 YR---ATFKCTVIQSTNGMPKFKDKTGGTLRRLLIVPFNANFNGIKENFKIKEDYIKNQQ 652
Query: 655 AKKWFLKGVKAYISKGLD---VDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEES 711
++ L Y + LD DIP+ K E ++ D + + D
Sbjct: 653 VLEYVL-----YKAINLDFETFDIPDASKKMLEVFKEDNDPVYGFKVNMFDQWTIRKVPK 707
Query: 712 HSLAKSYSEYREQELNYDRKRISTRTVTLNLKQ--KGFIGGIKREKIEKEWKSKRII 766
+ + Y EY ++ +S+ + + + + + + E +KRI
Sbjct: 708 YIVYAFYKEYCDENG---YNALSSNKFYKQFEHYLENYWKTDAQRRYDNEELAKRIY 761
>gi|161505697|ref|YP_001572809.1| hypothetical protein SARI_03873 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-- str. RSK2980]
gi|160867044|gb|ABX23667.1| hypothetical protein SARI_03873 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:--]
Length = 777
Score = 160 bits (404), Expect = 9e-37, Method: Composition-based stats.
Identities = 69/381 (18%), Positives = 122/381 (32%), Gaps = 61/381 (16%)
Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
R +G ++G+LD TG K ++ F + +F +
Sbjct: 411 RRLIGFRNGVLDTATGTFSPHHKAHWLRTLCDVDFTPPVEGETLETHAPDFWRWLDRAAG 470
Query: 479 S-EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
+E D + M L Q F+ + G GGSGKS L + G +A
Sbjct: 471 GRQEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNATSATIET 530
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
+ R L+G ++ + + E + A +K +TGGD ++ Y + Y
Sbjct: 531 LESPRER---------AALIGFSLIRLPD-QEKWSGDGAGLKAITGGDAVSVDPKYKDAY 580
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655
S + V N + + RR ++I F + IA RD K+ + +
Sbjct: 581 STHIPA-VILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPEERDPQLKNKIARELAVIV 639
Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWI--------D 698
++ P + + ++ D +
Sbjct: 640 RQLM-----------QKFSDPMAARTLLQSQQNSDEALSIKRDADPTFDFCGYLEALPEP 688
Query: 699 DCCDIGENL---WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755
+ IG + L +Y Y + Y R +S KG +K
Sbjct: 689 EGMYIGNANIIPRQPRLYLYHAYLAY-MEAHGY-RNTLSLTMFG-----KGLPAMLKEYG 741
Query: 756 I--EKEWKSKRIIKGLKLKPA 774
+ EK K++ I L L+
Sbjct: 742 LSYEKRRKNQGIQTNLTLREE 762
>gi|313896410|ref|ZP_07829961.1| nucleoside triphosphatase, D5 family [Selenomonas sp. oral taxon
137 str. F0430]
gi|312974834|gb|EFR40298.1| nucleoside triphosphatase, D5 family [Selenomonas sp. oral taxon
137 str. F0430]
Length = 764
Score = 160 bits (404), Expect = 1e-36, Method: Composition-based stats.
Identities = 55/377 (14%), Positives = 125/377 (33%), Gaps = 29/377 (7%)
Query: 408 SLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQ--KVKPTKELYITKSTGTPFVEGE- 464
L A + + + LD+ R + ++G+L + + + + T + E
Sbjct: 378 QLLATDLDYVPQEKLDADERLINFRNGLLYVSAAEAVLHPHSPKAMSTIQIPCNWTGKET 437
Query: 465 PSQEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKA--QRFIHIRGVGGSGKSTLMNLI 521
P+ F + + +G + ++ + + G G +GKS L +L+
Sbjct: 438 PTPVFDRYMHILTGGDAAIRQLLLEFMGACISNVKGWRMKKALFLVGEGDTGKSQLKSLV 497
Query: 522 KYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM 581
+ G I + ++I +A L G+R+ S+ + K++
Sbjct: 498 ERLLGTGNYIGIDLAEI---------EARFGTGTLYGTRLAGSSDMSFLTVAELKTFKKI 548
Query: 582 TGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD-DAWWRRYIVIPFDKPIAN-- 638
TGGD + A + + + N+ D + R + + PI
Sbjct: 549 TGGDSLFAEFKGQQGFEFT-YGGLLWFCMNRLPKFGGDDGKWVYNRIMAVNCPNPIPKDA 607
Query: 639 RDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID 698
+D +K+ + + ++ I+ G PE +E R+ +T + +
Sbjct: 608 QDKLLLEKMYAERE-GIVYKAVTALQTVIANGYRFSEPESIHVIRETYRRENNTVICFFE 666
Query: 699 DCCDIGENLW----EESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
+C + E + + Y + + + K + + L G +
Sbjct: 667 ECMEEREESKYTDGATTGRIYNVYKAWCQDNNHGFSK--TAKEFRDELAA---HVGSTFK 721
Query: 755 KIEKEWKSKRIIKGLKL 771
I ++ + L
Sbjct: 722 DISLHTRTGTYYRKFTL 738
>gi|284923731|emb|CBG36828.1| putative prophage DNA primase [Escherichia coli 042]
Length = 777
Score = 160 bits (404), Expect = 1e-36, Method: Composition-based stats.
Identities = 61/338 (18%), Positives = 113/338 (33%), Gaps = 36/338 (10%)
Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
R +G ++G+LD + G + ++ F + F +
Sbjct: 411 RRLIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVDGETLETHAPAFWRWLDRAAG 470
Query: 479 S-EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
E D + M L Q F+ + G GGSGKS + + G +A
Sbjct: 471 GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIET 530
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
+ R L G ++ + + E + A +K +TGGD ++ Y + Y
Sbjct: 531 LESPRER---------AALTGFSLIRLPD-QEKWSGDGAGLKAITGGDAVSVDPKYRDAY 580
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655
S + V N + + RR ++I F + IA RD K+ + +
Sbjct: 581 STHIPA-VIRAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITRELAVIV 639
Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID--DCCDIGENLWEESHS 713
+ K +++ L + +A ++ D +I + ++ + S
Sbjct: 640 RHLMQKFSDPMLARSLLQSQ-QNSDEALNI-KRDADPTFDFIGYLETLPQTSGMYMGNAS 697
Query: 714 ---------LAKSYSEYREQELNYDRKRISTRTVTLNL 742
L +Y Y E R +S + L L
Sbjct: 698 IIPRNYRKYLYHAYLAYMEANG--YRNVLSLKMFGLGL 733
>gi|224477014|ref|YP_002634620.1| hypothetical protein Sca_1530 [Staphylococcus carnosus subsp.
carnosus TM300]
gi|222421621|emb|CAL28435.1| conserved hypothetical protein [Staphylococcus carnosus subsp.
carnosus TM300]
Length = 506
Score = 160 bits (404), Expect = 1e-36, Method: Composition-based stats.
Identities = 63/362 (17%), Positives = 115/362 (31%), Gaps = 40/362 (11%)
Query: 398 ENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTG 457
++ K+ ++ I + + +G+ + ET + T + T
Sbjct: 122 SYNQRKAEDVIFHLTNMVKIVPRT--NEPHLIPVNNGVFNRETKKLESFTPDYVFTTKIT 179
Query: 458 TPFVEGEPSQ--------EFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGV 509
T ++EG +LD V+ EV + + +L G ++ I + G
Sbjct: 180 TNYIEGAVQPTISGWSFDNWLDEVA--CGDREVFTLLWQVINDSLNGNYTRKKAIFLVGD 237
Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569
G +GK T L+ G V + + ++ P L G +VI +
Sbjct: 238 GNNGKGTFQTLLSNLIGFDNVASLKVNEFDHEFKPSV---------LEGKTLVIGDDVPV 288
Query: 570 NDEI-NAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYI 628
I +++ + GD + + Y T N +N RR +
Sbjct: 289 GVNIEDSSNFNSVVTGDSILVNVKKKQPYRAV-FRCTVIQSTNGMPRFKNKTGGTNRRLL 347
Query: 629 VIPFDKPI--ANRDASFAQK-LETKYTLEAKKWFLKGVKAYISKGLDVD---IPEVCLKA 682
++PF+ + +K L K LE Y + LD +P+V
Sbjct: 348 IVPFNADFNGTKENPDIKEKYLNNKEVLE--------YVLYKAINLDFGKFIVPKVSADM 399
Query: 683 KEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNL 742
EE +Q D + D + + Y + E N +S R
Sbjct: 400 LEEYKQDNDPVYDFKVTEFDTWKIDKVPKSVVYYRYKVFCE---NSGYHALSERKFYKTF 456
Query: 743 KQ 744
Q
Sbjct: 457 NQ 458
>gi|90961737|ref|YP_535653.1| Phage DNA primase [Lactobacillus phage Sal1]
gi|90820931|gb|ABD99570.1| Phage DNA primase [Lactobacillus phage Sal1]
gi|300214516|gb|ADJ78932.1| Phage DNA primase [Lactobacillus salivarius CECT 5713]
Length = 289
Score = 159 bits (403), Expect = 1e-36, Method: Composition-based stats.
Identities = 47/292 (16%), Positives = 112/292 (38%), Gaps = 23/292 (7%)
Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540
++++ + N+ +F + G G +GKST +++I+ G++ + + + S++ Q
Sbjct: 10 DLVNLLYEIIAYTFYRRNELGKFFILTGSGANGKSTYLDMIRTLLGSKNISSLDVSELDQ 69
Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600
L G I + +++ + + +K++ G+ +TA + +
Sbjct: 70 RFKTG---------ELAGKLANIGDDISDSYIKDTSILKKLVTGEAVTAERKGLDPFMFE 120
Query: 601 PASFTPFIVPNKHLFVRNPDD--AWWRRYIVIPFDKPIANRDASFAQKLETKYTLE--AK 656
S N + D A RR +++PF+ + +D + ++ E K
Sbjct: 121 NYS-KLLFSANSIPRLGKGSDTKALNRRMVIVPFNATFSPKDPDYKPYIKYDLRQENAIK 179
Query: 657 KWFLKGVKAYIS--KGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
+K ++A + E+ + E+ + + DD + + L + + +
Sbjct: 180 YLIVKSIEALHRILENNGFTKSELADRELEKYEYENNPILGFFDD-LEETDYLNQPTKDV 238
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRII 766
K Y+EY + +S + + + F K ++ K RI
Sbjct: 239 YKLYTEYCLRNGLNS---VSNISFSRQITSH-FNLTSKSSRVN--GKVIRIY 284
>gi|16763293|ref|NP_458910.1| bacteriophage P4 DNA primase [Salmonella enterica subsp. enterica
serovar Typhi str. CT18]
gi|213648797|ref|ZP_03378850.1| bacteriophage P4 DNA primase [Salmonella enterica subsp. enterica
serovar Typhi str. J185]
gi|289824541|ref|ZP_06544100.1| bacteriophage P4 DNA primase [Salmonella enterica subsp. enterica
serovar Typhi str. E98-3139]
gi|25301728|pir||AE1063 Bacteriophage P4 DNA primase (EC 2.7.7.-) [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|16505601|emb|CAD06954.1| Bacteriophage P4 DNA primase [Salmonella enterica subsp. enterica
serovar Typhi]
Length = 777
Score = 159 bits (403), Expect = 1e-36, Method: Composition-based stats.
Identities = 63/370 (17%), Positives = 115/370 (31%), Gaps = 58/370 (15%)
Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
R +G ++G+LD TG K ++ F + F +
Sbjct: 411 RRLIGFRNGVLDTATGTFSPHHKSHWLRTLCDVDFTSPVEGETLETHAPHFWRWLDRAAG 470
Query: 479 S-EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
E D + M L Q F+ + G GGSGKS L + G +A
Sbjct: 471 GKPEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNATSATIET 530
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
+ R L+G ++ + + E + A +K +TGGD ++ Y + Y
Sbjct: 531 LESPRER---------AALIGFSLIRLPD-QEKWSGDGAGLKAITGGDAVSVDPKYKDAY 580
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655
S + V N + + RR ++I F + IA RD K+ +
Sbjct: 581 STHIPA-VILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPEERDPQLRDKIARE----- 634
Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWID--DCCDIG 704
++ + P + + ++ D + +
Sbjct: 635 LAIIVRQLMQ------KFSDPMTARTLLQSQQNSDEALSIKRDADPTFDFCGYLEMLPQT 688
Query: 705 ENLWEESHS---------LAKSYSEYREQELNYDRKRISTRTVT----LNLKQKGFIGGI 751
++ + S L +Y Y E R +S + + LK+ G
Sbjct: 689 NGMFMGNASIIPRNYRKYLYHAYLAYMEANG--YRNVLSLKMFGLGLPMMLKEYGLNYEK 746
Query: 752 KREKIEKEWK 761
+ K +
Sbjct: 747 RHTKQGIQTN 756
>gi|323978458|gb|EGB73541.1| poxvirus D5 protein [Escherichia coli TW10509]
Length = 777
Score = 159 bits (402), Expect = 2e-36, Method: Composition-based stats.
Identities = 63/370 (17%), Positives = 119/370 (32%), Gaps = 58/370 (15%)
Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
R +G ++G+LD ++G +K ++ F + F +
Sbjct: 411 RRLIGFRNGVLDTQSGLFSPHSKSHWLRTLCDVDFTPPVEGETLETHAPNFWRWLDRAAG 470
Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
S + D + M L Q F+ + G GGSGKS L + G +A+
Sbjct: 471 KSPQKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATLLAGEDNATSADIDT 530
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
+ R L+G ++ + + E + A +K +TGGD ++ Y N Y
Sbjct: 531 LEDPRKR---------ASLIGFSLIRLPD-QEKWSGDGAGLKAITGGDAVSVDPKYQNPY 580
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655
S + V N + + RR ++I F + IA RD K+ + +
Sbjct: 581 STHIPA-VILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPEERDPQLRDKIARELAVIV 639
Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWID--DCCDIG 704
++ P + + ++ D + +
Sbjct: 640 RQLM-----------QKFSDPMTARALLQSQQNSDEALNIKRDADPTFDFCGYLEMLPQT 688
Query: 705 ENLWEESHS---------LAKSYSEYREQELNYDRKRISTRTVT----LNLKQKGFIGGI 751
++ + S L +Y Y E R +S + + LK+ G
Sbjct: 689 NGMFMGNASIIPRNYRKYLYHAYLAYMEANG--YRNVLSLKMFGLGLPMMLKEYGLNYEK 746
Query: 752 KREKIEKEWK 761
+ K +
Sbjct: 747 RHTKQGIQTN 756
>gi|204927104|ref|ZP_03218306.1| nucleoside triphosphatase, D5 family [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|204323769|gb|EDZ08964.1| nucleoside triphosphatase, D5 family [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
Length = 777
Score = 159 bits (402), Expect = 2e-36, Method: Composition-based stats.
Identities = 63/370 (17%), Positives = 119/370 (32%), Gaps = 58/370 (15%)
Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
R +G ++G+LD ++G +K ++ F + F +
Sbjct: 411 RRLIGFRNGVLDTQSGLFSPHSKSHWLRTLCDVDFTPPVEGEMLETHAPNFWRWLDRAAG 470
Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
S + D + M L Q F+ + G GGSGKS L + G +A+
Sbjct: 471 KSPQKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATLLAGEDNATSADIDT 530
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
+ R L+G ++ + + E + A +K +TGGD ++ Y N Y
Sbjct: 531 LEDPRKR---------ASLIGFSLIRLPD-QEKWSGDGAGLKAITGGDAVSVDPKYQNPY 580
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655
S + V N + + RR ++I F + IA RD K+ + +
Sbjct: 581 STHIPA-VILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPEERDPQLRDKIARELAVIV 639
Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWID--DCCDIG 704
++ P + + ++ D + +
Sbjct: 640 RQLM-----------QKFSDPMTARALLQSQQNSDEALSIKRDADPTFDFCGYLEMLPQT 688
Query: 705 ENLWEESHS---------LAKSYSEYREQELNYDRKRISTRTVT----LNLKQKGFIGGI 751
++ + S L +Y Y E R +S + + LK+ G
Sbjct: 689 NGMFMGNASIIPRNYRKYLYHAYLAYMEANG--YRNVLSLKMFGLGLPMMLKEYGLNYEK 746
Query: 752 KREKIEKEWK 761
+ K +
Sbjct: 747 RHTKQGIQTN 756
>gi|296101066|ref|YP_003611212.1| nucleoside triphosphatase, D5 family [Enterobacter cloacae subsp.
cloacae ATCC 13047]
gi|295055525|gb|ADF60263.1| nucleoside triphosphatase, D5 family [Enterobacter cloacae subsp.
cloacae ATCC 13047]
Length = 556
Score = 159 bits (402), Expect = 2e-36, Method: Composition-based stats.
Identities = 62/370 (16%), Positives = 119/370 (32%), Gaps = 58/370 (15%)
Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
R +G ++G+LD ++G +K ++ F + F +
Sbjct: 190 RRLIGFRNGVLDTQSGLFSPHSKSYWLRTLCDVDFTPPVEGETLETHAPNFWRWLDRAAG 249
Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
+ + D + M L Q F+ + G GGSGKS L + G +A+
Sbjct: 250 KNPQKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATLLAGEDNATSADIDT 309
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
+ R L+G ++ + + E + A +K +TGGD ++ Y N Y
Sbjct: 310 LEDPRKR---------ASLIGFSLIRLPD-QEKWSGDGAGLKAITGGDAVSVDPKYQNPY 359
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655
S + V N + + RR ++I F + IA RD K+ + +
Sbjct: 360 STHIPA-VILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPEERDPQLRDKIARELAVIV 418
Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWID--DCCDIG 704
++ P + + ++ D + +
Sbjct: 419 RQLM-----------QKFSDPMAARALLQSQQNSDEALSIKRDADPTFDFCGYLEMLPQT 467
Query: 705 ENLWEESHS---------LAKSYSEYREQELNYDRKRISTRTVT----LNLKQKGFIGGI 751
++ + S L +Y Y E R +S + + LK+ G
Sbjct: 468 NGMFMGNASIVPRNYRKYLYHAYLAYMEANG--YRNVLSLKMFGLGLPMMLKEYGLNYEK 525
Query: 752 KREKIEKEWK 761
+ K +
Sbjct: 526 RHTKQGIQTN 535
>gi|172054865|ref|YP_001806192.1| hypothetical protein cce_4778 [Cyanothece sp. ATCC 51142]
gi|171701146|gb|ACB54126.1| hypothetical protein cce_4778 [Cyanothece sp. ATCC 51142]
Length = 704
Score = 159 bits (402), Expect = 2e-36, Method: Composition-based stats.
Identities = 57/445 (12%), Positives = 130/445 (29%), Gaps = 29/445 (6%)
Query: 249 IARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFS 308
+ W D+ + + ++ + +PK +
Sbjct: 263 LFLSWETLEKGIDDAIVS---NGKEWFRSVWENRSNEPDPIKITKLEHELPKW------N 313
Query: 309 DAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIW----SLTLDKITASIMNFLVSMKE 364
+ F K ++ T W+ IW + L+K + L E
Sbjct: 314 EEGLTLYFEELYKDRLIFEDATGEWHLYSAEKEGIWGKISKIQLEKRIILELRELKQKFE 373
Query: 365 D-----VFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITS 419
+ E N + ++ E + + I +T
Sbjct: 374 QINGQIAGAIKSVKESNRSREEKKDIIEQLKAQKPTYREITINFVEKLGKKLSRILLVTE 433
Query: 420 DLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFES 479
++ + ++G+LD+ET + Y T S + + + +
Sbjct: 434 MACNAHKGLIPFRNGVLDIETRDLWPHSPTNYFTWSLPYDYNPLATGEPIKQWLLEMMQG 493
Query: 480 EE-VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538
+E +++ + + G Q+F+ + G GG+GKSTL+ L G +
Sbjct: 494 DESLVELVRAYLHGVVTGRADWQKFLELIGPGGTGKSTLIRLAIALVGFSNCHVTTLKRL 553
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598
++ + R+V++++ + +K +TG D +
Sbjct: 554 ETSK--------FETANIKDKRLVLVTDAERYTG-DVTTLKALTGEDSLPYEKKMQQATG 604
Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD-ASFAQKLETKYTLEAKK 657
I N+H+ + RR I + + I+ + + +
Sbjct: 605 GFKPDCLVIIAGNEHIKTSDYTSGLQRRRITVGMRRKISEENQRNLIKHDNQGNISGEFV 664
Query: 658 WFLKGVKAYISKGLDVDIPEVCLKA 682
++ G ++ + E A
Sbjct: 665 PYIPGFLNWVLEMESEKASECIKNA 689
>gi|194442419|ref|YP_002042010.1| bacteriophage P4 DNA primase [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|194401082|gb|ACF61304.1| bacteriophage P4 DNA primase [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
Length = 777
Score = 159 bits (402), Expect = 2e-36, Method: Composition-based stats.
Identities = 68/381 (17%), Positives = 124/381 (32%), Gaps = 61/381 (16%)
Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
R +G ++G+LD TG K ++ F + +F +
Sbjct: 411 RRLIGFRNGVLDTATGTFSPHHKSHWLRTLCDVDFTPPVEGETLETHAPDFWRWLDRAAG 470
Query: 479 S-EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
+E D + M L Q F+ + G GGSGKS L + G +A
Sbjct: 471 GRQEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNATSATIET 530
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
+ R L+G ++ + + E + A +K +TGGD ++ Y + Y
Sbjct: 531 LESPRER---------AALIGFSLIRLPD-QEKWSGDGAGLKAITGGDAVSVDPKYKDAY 580
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655
S + V N + + RR +++ F + IA RD K+ + +
Sbjct: 581 STHIPA-VILAVNNNPMRFTDRSGGVSRRRVILHFPEQIAPDERDPQLKNKIARELAVIV 639
Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWID--DCCDIG 704
++ P + + ++ D + +
Sbjct: 640 RQLM-----------QKFSDPMTARALLQSQQNSDEALSIKREADPTFDFCGYLEALPEP 688
Query: 705 ENLWEESHS---------LAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755
E ++ + S L +Y Y + Y R +S KG +K
Sbjct: 689 EGMYIGNASIIPRQPRLYLYHAYLAY-MEAHGY-RNTLSLTMFG-----KGLPAMLKEYG 741
Query: 756 I--EKEWKSKRIIKGLKLKPA 774
+ EK K++ I L L+
Sbjct: 742 LSYEKRRKNQGIQTNLALREE 762
>gi|320665356|gb|EFX32443.1| alpha replication protein of prophage CP-933I [Escherichia coli
O157:H7 str. LSU-61]
Length = 777
Score = 159 bits (401), Expect = 2e-36, Method: Composition-based stats.
Identities = 64/403 (15%), Positives = 130/403 (32%), Gaps = 68/403 (16%)
Query: 379 NSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFS----ITSDLLDSSSRFLGEQDG 434
+ + + + D+ R + + S + S+ I + + + +G ++G
Sbjct: 360 EAGAWKVIYYADFARDVAALFQRLDAPFSSAKIASLVETLKLIVPQQQNPARQLIGFRNG 419
Query: 435 ILDLETGQKVKPTKELYITKSTGTPFVEG----------EPSQEFLDLVSGYFESEEVMD 484
+LD TG K+ ++ + + +LD +G+ + E D
Sbjct: 420 VLDTRTGLFSPHDKKHWLRTLCEVDYTQPVDGESLETHAPAFWRWLDRAAGF--NPEKRD 477
Query: 485 YFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544
+ M L Q F+ + G GGSGKS L + G +A + R
Sbjct: 478 IILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNATSATIEMLESPRER 537
Query: 545 EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604
L+G ++ + + E + A +K +TGGD ++ Y N YS +
Sbjct: 538 ---------AALIGFSLIRLPD-QEKWSGDGAGLKAITGGDAVSVDPKYQNAYSTHIPA- 586
Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKG 662
V N + + RR +++ F IA RD +K+ ++ + ++ +
Sbjct: 587 VILAVNNNPMRFTDRSGGVSRRRVILHFPDQIAPEERDTQLKEKIASELAVIVRQLMQR- 645
Query: 663 VKAYISKGLDVDIPEVCLKAKEEERQGT-----------------------DTYQAWIDD 699
P + ++ DT ++ +
Sbjct: 646 ----------FSDPMSARTLLQSQQNSDEALTIKRDADSAFDFCGYLEVLPDTTGMFMGN 695
Query: 700 CCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNL 742
+ + L +Y Y E + +S L
Sbjct: 696 ANIV---PRQPRTYLYHAYLVYMEANG--YKNTLSLTMFGKGL 733
>gi|320662430|gb|EFX29819.1| Alpha replication protein of prophage CP-933I [Escherichia coli
O55:H7 str. USDA 5905]
Length = 777
Score = 159 bits (401), Expect = 2e-36, Method: Composition-based stats.
Identities = 64/403 (15%), Positives = 130/403 (32%), Gaps = 68/403 (16%)
Query: 379 NSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFS----ITSDLLDSSSRFLGEQDG 434
+ + + + D+ R + + S + S+ I + + + +G ++G
Sbjct: 360 EAGAWKVIYYADFARDVAALFQRLDAPFSSAKIASLVENLKLIVPQQQNPARQLIGFRNG 419
Query: 435 ILDLETGQKVKPTKELYITKSTGTPFVEG----------EPSQEFLDLVSGYFESEEVMD 484
+LD TG K+ ++ + + +LD +G+ + E D
Sbjct: 420 VLDTRTGLFSPHDKKHWLRTLCEVDYTQPVDGESLETHAPAFWRWLDRAAGF--NPEKRD 477
Query: 485 YFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544
+ M L Q F+ + G GGSGKS L + G +A + R
Sbjct: 478 IILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNATSATIEMLESPRER 537
Query: 545 EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604
L+G ++ + + E + A +K +TGGD ++ Y N YS +
Sbjct: 538 ---------AALIGFSLIRLPD-QEKWSGDGAGLKAITGGDAVSVDPKYQNAYSTHIPA- 586
Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKG 662
V N + + RR +++ F IA RD +K+ ++ + ++ +
Sbjct: 587 VILAVNNNPMRFTDRSGGVSRRRVILHFPDQIAPEERDTQLKEKIASELAVIVRQLMQR- 645
Query: 663 VKAYISKGLDVDIPEVCLKAKEEERQGT-----------------------DTYQAWIDD 699
P + ++ DT ++ +
Sbjct: 646 ----------FSDPMSARTLLQSQQNSDEALTIKRDADSAFDFCGYLEVLPDTTGMFMGN 695
Query: 700 CCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNL 742
+ + L +Y Y E + +S L
Sbjct: 696 ANIV---PRQPRTYLYHAYLVYMEANG--YKNTLSLTMFGKGL 733
>gi|291281168|ref|YP_003497986.1| Alpha replication protein of prophage CP-933I [Escherichia coli
O55:H7 str. CB9615]
gi|290761041|gb|ADD55002.1| Alpha replication protein of prophage CP-933I [Escherichia coli
O55:H7 str. CB9615]
Length = 796
Score = 159 bits (401), Expect = 2e-36, Method: Composition-based stats.
Identities = 64/403 (15%), Positives = 130/403 (32%), Gaps = 68/403 (16%)
Query: 379 NSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFS----ITSDLLDSSSRFLGEQDG 434
+ + + + D+ R + + S + S+ I + + + +G ++G
Sbjct: 379 EAGAWKVIYYADFARDVAALFQRLDAPFSSAKIASLVENLKLIVPQQQNPARQLIGFRNG 438
Query: 435 ILDLETGQKVKPTKELYITKSTGTPFVEG----------EPSQEFLDLVSGYFESEEVMD 484
+LD TG K+ ++ + + +LD +G+ + E D
Sbjct: 439 VLDTRTGLFSPHDKKHWLRTLCEVDYTQPVDGESLETHAPAFWRWLDRAAGF--NPEKRD 496
Query: 485 YFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544
+ M L Q F+ + G GGSGKS L + G +A + R
Sbjct: 497 IILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNATSATIEMLESPRER 556
Query: 545 EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604
L+G ++ + + E + A +K +TGGD ++ Y N YS +
Sbjct: 557 ---------AALIGFSLIRLPD-QEKWSGDGAGLKAITGGDAVSVDPKYQNAYSTHIPA- 605
Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKG 662
V N + + RR +++ F IA RD +K+ ++ + ++ +
Sbjct: 606 VILAVNNNPMRFTDRSGGVSRRRVILHFPDQIAPEERDTQLKEKIASELAVIVRQLMQR- 664
Query: 663 VKAYISKGLDVDIPEVCLKAKEEERQGT-----------------------DTYQAWIDD 699
P + ++ DT ++ +
Sbjct: 665 ----------FSDPMSARTLLQSQQNSDEALTIKRDADSAFDFCGYLEVLPDTTGMFMGN 714
Query: 700 CCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNL 742
+ + L +Y Y E + +S L
Sbjct: 715 ANIV---PRQPRTYLYHAYLVYMEANG--YKNTLSLTMFGKGL 752
>gi|15799978|ref|NP_285990.1| alpha replication protein of prophage CP-933I [Escherichia coli
O157:H7 EDL933]
gi|12513053|gb|AAG54598.1|AE005204_8 alpha replication protein of prophage CP-933I [Escherichia coli
O157:H7 str. EDL933]
Length = 796
Score = 159 bits (401), Expect = 2e-36, Method: Composition-based stats.
Identities = 64/403 (15%), Positives = 130/403 (32%), Gaps = 68/403 (16%)
Query: 379 NSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFS----ITSDLLDSSSRFLGEQDG 434
+ + + + D+ R + + S + S+ I + + + +G ++G
Sbjct: 379 EAGAWKVIYYADFARDVAALFQRLDAPFSSAKIASLVETLKLIVPQQQNPARQLIGFRNG 438
Query: 435 ILDLETGQKVKPTKELYITKSTGTPFVEG----------EPSQEFLDLVSGYFESEEVMD 484
+LD TG K+ ++ + + +LD +G+ + E D
Sbjct: 439 VLDTRTGLFSPHDKKHWLRTLCEVDYTQPVDGESLETHAPAFWRWLDRAAGF--NPEKRD 496
Query: 485 YFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544
+ M L Q F+ + G GGSGKS L + G +A + R
Sbjct: 497 IILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNATSATIEMLESPRER 556
Query: 545 EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604
L+G ++ + + E + A +K +TGGD ++ Y N YS +
Sbjct: 557 ---------AALIGFSLIRLPD-QEKWSGDGAGLKAITGGDAVSVDPKYQNAYSTHIPA- 605
Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKG 662
V N + + RR +++ F IA RD +K+ ++ + ++ +
Sbjct: 606 VILAVNNNPMRFTDRSGGVSRRRVILHFPDQIAPEERDTQLKEKIASELAVIVRQLMQR- 664
Query: 663 VKAYISKGLDVDIPEVCLKAKEEERQGT-----------------------DTYQAWIDD 699
P + ++ DT ++ +
Sbjct: 665 ----------FSDPMSARTLLQSQQNSDEALTIKRDADSAFDFCGYLEVLPDTTGMFMGN 714
Query: 700 CCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNL 742
+ + L +Y Y E + +S L
Sbjct: 715 ANIV---PRQPRTYLYHAYLVYMEANG--YKNTLSLTMFGKGL 752
>gi|15829557|ref|NP_308330.1| DNA primase [Escherichia coli O157:H7 str. Sakai]
gi|168749120|ref|ZP_02774142.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC4113]
gi|168755822|ref|ZP_02780829.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC4401]
gi|168761913|ref|ZP_02786920.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC4501]
gi|168769623|ref|ZP_02794630.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC4486]
gi|168775431|ref|ZP_02800438.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC4196]
gi|168782620|ref|ZP_02807627.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC4076]
gi|168788540|ref|ZP_02813547.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC869]
gi|168799812|ref|ZP_02824819.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC508]
gi|195937755|ref|ZP_03083137.1| putative DNA primase [Escherichia coli O157:H7 str. EC4024]
gi|208809690|ref|ZP_03252027.1| putative nucleoside triphosphatase, D5 family [Escherichia coli
O157:H7 str. EC4206]
gi|208814873|ref|ZP_03256052.1| putative nucleoside triphosphatase, D5 family [Escherichia coli
O157:H7 str. EC4045]
gi|208822948|ref|ZP_03263266.1| putative nucleoside triphosphatase, D5 family [Escherichia coli
O157:H7 str. EC4042]
gi|209396448|ref|YP_002268896.1| putative nucleoside triphosphatase, D5 family [Escherichia coli
O157:H7 str. EC4115]
gi|217324819|ref|ZP_03440903.1| nucleoside triphosphatase, D5 family [Escherichia coli O157:H7 str.
TW14588]
gi|254791433|ref|YP_003076270.1| alpha replication protein of prophage CP-933I [Escherichia coli
O157:H7 str. TW14359]
gi|261223633|ref|ZP_05937914.1| alpha replication protein of prophage CP-933I [Escherichia coli
O157:H7 str. FRIK2000]
gi|261255948|ref|ZP_05948481.1| alpha replication protein of prophage CP-933I [Escherichia coli
O157:H7 str. FRIK966]
gi|13359760|dbj|BAB33726.1| putative DNA primase [Escherichia coli O157:H7 str. Sakai]
gi|187769062|gb|EDU32906.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC4196]
gi|188016499|gb|EDU54621.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC4113]
gi|188999907|gb|EDU68893.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC4076]
gi|189356863|gb|EDU75282.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC4401]
gi|189361353|gb|EDU79772.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC4486]
gi|189367685|gb|EDU86101.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC4501]
gi|189371667|gb|EDU90083.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC869]
gi|189377822|gb|EDU96238.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC508]
gi|208729491|gb|EDZ79092.1| putative nucleoside triphosphatase, D5 family [Escherichia coli
O157:H7 str. EC4206]
gi|208731521|gb|EDZ80209.1| putative nucleoside triphosphatase, D5 family [Escherichia coli
O157:H7 str. EC4045]
gi|208737141|gb|EDZ84825.1| putative nucleoside triphosphatase, D5 family [Escherichia coli
O157:H7 str. EC4042]
gi|209157848|gb|ACI35281.1| putative nucleoside triphosphatase, D5 family [Escherichia coli
O157:H7 str. EC4115]
gi|217321040|gb|EEC29464.1| nucleoside triphosphatase, D5 family [Escherichia coli O157:H7 str.
TW14588]
gi|254590833|gb|ACT70194.1| alpha replication protein of prophage CP-933I [Escherichia coli
O157:H7 str. TW14359]
gi|320192406|gb|EFW67050.1| DNA primase , phage-associated [Escherichia coli O157:H7 str.
EC1212]
gi|320638547|gb|EFX08255.1| alpha replication protein of prophage CP-933I [Escherichia coli
O157:H7 str. G5101]
gi|320644008|gb|EFX13088.1| alpha replication protein of prophage CP-933I [Escherichia coli
O157:H- str. 493-89]
gi|320649290|gb|EFX17841.1| alpha replication protein of prophage CP-933I [Escherichia coli
O157:H- str. H 2687]
gi|326338838|gb|EGD62656.1| DNA primase , phage-associated [Escherichia coli O157:H7 str. 1125]
gi|326343458|gb|EGD67222.1| DNA primase , phage-associated [Escherichia coli O157:H7 str. 1044]
Length = 777
Score = 159 bits (401), Expect = 2e-36, Method: Composition-based stats.
Identities = 64/403 (15%), Positives = 130/403 (32%), Gaps = 68/403 (16%)
Query: 379 NSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFS----ITSDLLDSSSRFLGEQDG 434
+ + + + D+ R + + S + S+ I + + + +G ++G
Sbjct: 360 EAGAWKVIYYADFARDVAALFQRLDAPFSSAKIASLVETLKLIVPQQQNPARQLIGFRNG 419
Query: 435 ILDLETGQKVKPTKELYITKSTGTPFVEG----------EPSQEFLDLVSGYFESEEVMD 484
+LD TG K+ ++ + + +LD +G+ + E D
Sbjct: 420 VLDTRTGLFSPHDKKHWLRTLCEVDYTQPVDGESLETHAPAFWRWLDRAAGF--NPEKRD 477
Query: 485 YFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544
+ M L Q F+ + G GGSGKS L + G +A + R
Sbjct: 478 IILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNATSATIEMLESPRER 537
Query: 545 EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604
L+G ++ + + E + A +K +TGGD ++ Y N YS +
Sbjct: 538 ---------AALIGFSLIRLPD-QEKWSGDGAGLKAITGGDAVSVDPKYQNAYSTHIPA- 586
Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKG 662
V N + + RR +++ F IA RD +K+ ++ + ++ +
Sbjct: 587 VILAVNNNPMRFTDRSGGVSRRRVILHFPDQIAPEERDTQLKEKIASELAVIVRQLMQR- 645
Query: 663 VKAYISKGLDVDIPEVCLKAKEEERQGT-----------------------DTYQAWIDD 699
P + ++ DT ++ +
Sbjct: 646 ----------FSDPMSARTLLQSQQNSDEALTIKRDADSAFDFCGYLEVLPDTTGMFMGN 695
Query: 700 CCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNL 742
+ + L +Y Y E + +S L
Sbjct: 696 ANIV---PRQPRTYLYHAYLVYMEANG--YKNTLSLTMFGKGL 733
>gi|300719024|ref|YP_003743827.1| phage/plasmid primase, P4 family [Erwinia billingiae Eb661]
gi|299064860|emb|CAX61980.1| Phage/plasmid primase, P4 family [Erwinia billingiae Eb661]
Length = 776
Score = 159 bits (401), Expect = 2e-36, Method: Composition-based stats.
Identities = 61/377 (16%), Positives = 126/377 (33%), Gaps = 56/377 (14%)
Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEF 469
I + + R +G ++G+LD T K+ ++ + F P + F
Sbjct: 401 IVPQQAEPARRLIGFRNGVLDTRTATFSPHRKDYWLRTVSDVDFTPPVPGETLESHAPHF 460
Query: 470 LDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528
+ S E D + M L Q F+ + G GGSGKS + ++ G
Sbjct: 461 WQWLDRAAGRSAEKRDIILAALFMVLANRFDWQLFLEVTGPGGSGKSIMADIATMLAGTD 520
Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588
+A + +R ++G ++I+ + E + A IK +TGGD ++
Sbjct: 521 NTTSATIETLESSRER---------AAVIGYSLIILPD-QEKWSGDGAGIKAITGGDAVS 570
Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQK 646
Y + YS + V N + + RR +++ F + + + RD +K
Sbjct: 571 VDPKYRDAYSTHIPA-VILAVNNNPMRFTDRSGGVSRRRVILHFPEIVSASERDPQLKEK 629
Query: 647 LETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWI 697
+ + ++ ++ + P+ + + ++ D +
Sbjct: 630 IRGELSVIVRQLMQR-----------FSQPQDARTLLQSQQNSDEAMRIKRDADPMVDFC 678
Query: 698 DD-CCDIGENL----------WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746
N + L +Y Y E + +S + L+L G
Sbjct: 679 GYLFTTPEPNALYMGNASIRPSQPKRYLYHAYLAYMEANG--YKNPLSMKMFGLSLD--G 734
Query: 747 FIGGIKREKIEKEWKSK 763
+ +++ K
Sbjct: 735 ILREYGLNYLKRRTKLG 751
>gi|304558208|gb|ADM40872.1| DNA primase [Edwardsiella tarda FL6-60]
Length = 777
Score = 159 bits (401), Expect = 3e-36, Method: Composition-based stats.
Identities = 63/370 (17%), Positives = 118/370 (31%), Gaps = 58/370 (15%)
Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
R +G ++G+LD ++G K ++ F + F +
Sbjct: 411 RRLIGFRNGVLDTQSGVFSPHHKSHWLCTLCDVDFTPPVEGETLETHAPNFWRWLDRAAG 470
Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
S + D + M L Q F+ + G GGSGKS L + G +A+
Sbjct: 471 KSPQKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATLLAGEDNATSADIDT 530
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
+ R L+G ++ + + E + A +K +TGGD ++ Y N Y
Sbjct: 531 LEDPRKR---------ASLIGFSLIRLPD-QEKWSGDGAGLKAITGGDAVSVDPKYQNPY 580
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655
S + V N + + RR ++I F + IA RD K+ + +
Sbjct: 581 STHIPA-VILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPEERDPQLRDKIARELAVIV 639
Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWID--DCCDIG 704
++ P + + ++ D + +
Sbjct: 640 RQLM-----------QKFSDPMTARALLQSQQNSDEALSIKRDADPTFDFCGYLEMLPQT 688
Query: 705 ENLWEESHS---------LAKSYSEYREQELNYDRKRISTRTVT----LNLKQKGFIGGI 751
++ + S L +Y Y E R +S + + LK+ G
Sbjct: 689 SGMFMGNASIIPRNYRKYLYHAYLAYMEANG--YRNVLSLKMFGLGLPMMLKEYGLNYEK 746
Query: 752 KREKIEKEWK 761
+ K +
Sbjct: 747 RHTKQGIQTN 756
>gi|320656999|gb|EFX24834.1| alpha replication protein of prophage CP-933I [Escherichia coli
O55:H7 str. 3256-97 TW 07815]
Length = 777
Score = 159 bits (401), Expect = 3e-36, Method: Composition-based stats.
Identities = 63/403 (15%), Positives = 129/403 (32%), Gaps = 68/403 (16%)
Query: 379 NSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFS----ITSDLLDSSSRFLGEQDG 434
+ + + + D+ R + + S + S+ I + + + +G ++G
Sbjct: 360 EAGAWKVIYYADFARDVAALFQRLDAPFSSAKIASLVETLKLIVPQQQNPARQLIGFRNG 419
Query: 435 ILDLETGQKVKPTKELYITKSTGTPFVEG----------EPSQEFLDLVSGYFESEEVMD 484
+ D TG K+ ++ + + +LD +G+ + E D
Sbjct: 420 VFDTRTGLFSPHDKKHWLRTLCEVDYTQPVDGESLETHAPAFWRWLDRAAGF--NPEKRD 477
Query: 485 YFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544
+ M L Q F+ + G GGSGKS L + G +A + R
Sbjct: 478 IILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNATSATIEMLESPRER 537
Query: 545 EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604
L+G ++ + + E + A +K +TGGD ++ Y N YS +
Sbjct: 538 ---------AALIGFSLIRLPD-QEKWSGDGAGLKAITGGDAVSVDPKYQNAYSTHIPA- 586
Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKG 662
V N + + RR +++ F IA RD +K+ ++ + ++ +
Sbjct: 587 VILAVNNNPMRFTDRSGGVSRRRVILHFPDQIAPEERDTQLKEKIASELAVIVRQLMQR- 645
Query: 663 VKAYISKGLDVDIPEVCLKAKEEERQGT-----------------------DTYQAWIDD 699
P + ++ DT ++ +
Sbjct: 646 ----------FSDPMSARTLLQSQQNSDEALTIKRDADSAFDFCGYLEVLPDTTGMFMGN 695
Query: 700 CCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNL 742
+ + L +Y Y E + +S L
Sbjct: 696 ANIV---PRQPRTYLYHAYLVYMEANG--YKNTLSLTMFGKGL 733
>gi|229824159|ref|ZP_04450228.1| hypothetical protein GCWU000282_01463 [Catonella morbi ATCC 51271]
gi|229786513|gb|EEP22627.1| hypothetical protein GCWU000282_01463 [Catonella morbi ATCC 51271]
Length = 703
Score = 158 bits (400), Expect = 3e-36, Method: Composition-based stats.
Identities = 59/408 (14%), Positives = 138/408 (33%), Gaps = 28/408 (6%)
Query: 350 KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSL 409
+ F+ + ++ + S S + N++ ++ + Q +
Sbjct: 308 DVFEYANEFIERYQVVYYNQALFFRTGVSWSSSDNKLLRLVDQEVNLKRSADTELLHQLI 367
Query: 410 EAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF 469
+ + I ++L+ + ++ +E G+ + E + + Q
Sbjct: 368 KKAPL--IEEEILN-----IQLKND-YRIEGGKVKEGAVEDFTPYLLDVAYDPKAYDQTV 419
Query: 470 LDLVSGYFES-EEVMDYFTRCVGMALLGGNKAQRFIHIRG-VGGSGKSTLMNLIKYAFGN 527
D ++ + +++ +G ++ + + G GG+GKST + ++ G
Sbjct: 420 DDFLNFLVKDRQDLRLIIEELLGHIIMLQGFPHKVFFLVGEKGGNGKSTFLEMLNNFVG- 478
Query: 528 QYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCM 587
++ N E K + S+ L G + I + + + + K + G+ +
Sbjct: 479 ---------ELGSNINLENFKDHTSVASLEGKLVNIGDDIDASYMEKSQIFKTLASGNKV 529
Query: 588 TARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKL 647
R Y ++ T N ++ RR +++P D + D +KL
Sbjct: 530 ALRPIYKEPFT-LKNRATLIFTANDMPVFKDKTGGIERRLVILPCDNVVKTADFEIDKKL 588
Query: 648 ETKYTLE-AKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGEN 706
+ L+G++ G + E E + +DT ++I+ + G +
Sbjct: 589 SSDQAKSYILNLALQGLERIRRNGGKLSESETLKHELESYMEDSDTVLSYIN---NKGID 645
Query: 707 LWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
+ + Y +Y + K I LK KG+ R
Sbjct: 646 PNMDRKMVYSDYVQYCAEIGQTPHKAI---AFGKRLKAKGYETRETRR 690
>gi|254991956|ref|ZP_05274146.1| phage-related DNA primase/helicase, putative [Listeria
monocytogenes FSL J2-064]
Length = 780
Score = 158 bits (400), Expect = 3e-36, Method: Composition-based stats.
Identities = 61/344 (17%), Positives = 123/344 (35%), Gaps = 36/344 (10%)
Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE--------FLDLVSGYF 477
+ ++G+ +L+T + T + T TP+V P Q +LD ++
Sbjct: 417 KYLIPVKNGVFNLKTKKLEAFTPDYVFTSKIATPYVANPPKQNINGWDVHTWLDEIA--C 474
Query: 478 ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
E++ + + +L G + I + G G +GK T L++ GN + +
Sbjct: 475 GDEQITSLLWQVISASLNGNYSRKSSIWLLGDGNNGKGTFQQLLRNLIGNSNIATLKLPQ 534
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA-AKIKQMTGGDCMTARLNYGNT 596
+ SL L I + I+ + + GD + +
Sbjct: 535 FQE---------RFSLSILEEKVCCIGDDVPAGVYIDDSSNFNSVVTGDEIMVEQKNKHP 585
Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAK 656
YS + T N +RN D +RR+I++PF + ++ K E E
Sbjct: 586 YSAN-FHMTVIQSTNGMPKMRNKTDGTYRRFIIVPFKANLKGGKDNWKIKDEYIQNKEVL 644
Query: 657 KWFLKGVKAYISKGLDVD---IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHS 713
++ L + + +D + P+V K EE + D + + ++ +
Sbjct: 645 QYIL-----FHAINMDFERFVEPDVSKKIMEEYKLDNDPILDYYERIFKEYKSTRIPLYV 699
Query: 714 LAKSYSEYREQELNYDRKRISTRTVTLN----LKQKGFIGGIKR 753
+ + Y + E K + R+ L ++G+ G +
Sbjct: 700 VYEFYKYFCESNN---LKPVGDRSFYKRFGEILSEEGWEKGKHK 740
>gi|251793975|ref|YP_003008707.1| D5 N like family [Aggregatibacter aphrophilus NJ8700]
gi|247535374|gb|ACS98620.1| D5 N like family [Aggregatibacter aphrophilus NJ8700]
Length = 607
Score = 158 bits (400), Expect = 3e-36, Method: Composition-based stats.
Identities = 77/442 (17%), Positives = 154/442 (34%), Gaps = 65/442 (14%)
Query: 344 WSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAK 403
T +IT + + + + + E N ++ +E K
Sbjct: 160 EKPTQPEITEAFLQWTDKPIRQDSTIGKTLEYNGLYWQALPETILQRKIMAFYDEQGYNK 219
Query: 404 STAQSLEA-GSIFSITSDLLD-SSSRFLGEQDGILDLETGQKVKPTKELYITKS----TG 457
T +SL+A + +I +D + + F+G Q+G+L +TG+ + + ++
Sbjct: 220 YTVRSLKAIADLVAIKADEIPTQNPDFIGFQNGVLSKKTGEFMPHKIDHFLRSIEKFDCD 279
Query: 458 TPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTL 517
T ++++ VS ++ + + M L ++ F+ G G+GKS
Sbjct: 280 TRSQNTPHFDDWIEFVSN--GNQNRKNAILAGLYMVLTNRHEWGLFLEATGTAGAGKSVF 337
Query: 518 MNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK 577
+ G ++ +R L+G + I + + +A +
Sbjct: 338 SRIASIINGESNTGYINLQELEIDRKR---------AMLIGKSLAISPDQKPY-KGSADE 387
Query: 578 IKQMTGGDCMTARLNYGNTY-SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI 636
+K +TGGD +T +L Y + + + F +V N L + + RR I+IPFD+ I
Sbjct: 388 LKAITGGDNVTVKLVYVDDFAVKLTPVF--MLVTNYPLLFTDRNGGIARRRIIIPFDRAI 445
Query: 637 A--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEER------- 687
+D F +K+ K L P+ EE R
Sbjct: 446 PKEKKDVHFTEKV-QKEVYGIVNKLLA----------LFPEPDTARTILEEYRDLDEGKH 494
Query: 688 --QGTDTYQAWIDDCCDIGENLWEES--------------------HSLAKSYSEYREQE 725
+ ++ ++ ++ E+ E++ SL +Y Y E
Sbjct: 495 IKRESNHLIDFLG-HFELREHRNEKALRIGNARGGFIPYGDRLGKPDSLYSAYLFYCECN 553
Query: 726 LNYDRKRIS-TRTVTLNLKQKG 746
R S ++ K+ G
Sbjct: 554 GLSPINRFSFNNALSDAFKEAG 575
>gi|116872632|ref|YP_849413.1| phage-related DNA primase/helicase, putative [Listeria welshimeri
serovar 6b str. SLCC5334]
gi|116741510|emb|CAK20634.1| phage-related DNA primase/helicase, putative [Listeria welshimeri
serovar 6b str. SLCC5334]
Length = 780
Score = 158 bits (400), Expect = 3e-36, Method: Composition-based stats.
Identities = 61/344 (17%), Positives = 123/344 (35%), Gaps = 36/344 (10%)
Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE--------FLDLVSGYF 477
+ ++G+ +L+T + T + T TP+V P Q +LD ++
Sbjct: 417 KYLIPVKNGVFNLKTKKLEAFTPDYVFTSKIATPYVANPPKQNINGWDVHTWLDEIA--C 474
Query: 478 ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
E++ + + +L G + I + G G +GK T L++ GN + +
Sbjct: 475 GDEQITSLLWQVISASLNGNYSRKSSIWLLGDGNNGKGTFQQLLRNLIGNSNIATLKLPQ 534
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA-AKIKQMTGGDCMTARLNYGNT 596
+ SL L I + I+ + + GD + +
Sbjct: 535 FQE---------RFSLSILEEKVCCIGDDVPAGVYIDDSSNFNSVVTGDEIMVEQKNKHP 585
Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAK 656
YS + T N +RN D +RR+I++PF + ++ K E E
Sbjct: 586 YSAN-FHMTVIQSTNGMPKMRNKTDGTYRRFIIVPFKANLKGGKDNWKIKDEYIQNKEVL 644
Query: 657 KWFLKGVKAYISKGLDVD---IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHS 713
++ L + + +D + P+V K EE + D + + ++ +
Sbjct: 645 QYIL-----FHAINMDFERFVEPDVSKKIMEEYKLDNDPILDYYERIFKEYKSTRIPLYV 699
Query: 714 LAKSYSEYREQELNYDRKRISTRTVTLN----LKQKGFIGGIKR 753
+ + Y + E K + R+ L ++G+ G +
Sbjct: 700 VYEFYKYFCESNN---LKPVGDRSFYKRFGEILSEEGWEKGKHK 740
>gi|282890934|ref|ZP_06299448.1| hypothetical protein pah_c032o008 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|281499149|gb|EFB41454.1| hypothetical protein pah_c032o008 [Parachlamydia acanthamoebae str.
Hall's coccus]
Length = 248
Score = 158 bits (399), Expect = 4e-36, Method: Composition-based stats.
Identities = 53/245 (21%), Positives = 100/245 (40%), Gaps = 21/245 (8%)
Query: 548 KANPSLIRLMGSRIVIISETNENDEINAAK------IKQMTGGDCMTARLNYGNTYSESP 601
L G + I++E E EI +K + G+ TA + N + P
Sbjct: 15 DNRFQRAHLFGKLVNIVTEIAEGAEIAEGAEIADAALKAIVSGERTTAEHKHKNPFDFHP 74
Query: 602 ASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEAKKWF 659
S T + N R+ DA +RR I++ F++ RD QKL+ + +
Sbjct: 75 YS-TCWFGANHMPHCRDFSDAIFRRAIILSFNQKFEGPGRDVHLRQKLQMEIS-GILNLA 132
Query: 660 LKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYS 719
L+G+ +G P AK R D + ++ D C+I +L S + KSY+
Sbjct: 133 LEGIAGVFERGEFTYCP-SSEAAKRNWRFECDQVEQFVTDACEIASSLRSSSLDIFKSYT 191
Query: 720 EYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP-AFESV 778
++ ++ ++ + +T L++ G + + KR++ G+ +K + +
Sbjct: 192 DWAKEMG--VKRILGHNGLTQRLQKLG-------VETSRGTNGKRMLSGISIKSISLNDI 242
Query: 779 DDNSN 783
D S+
Sbjct: 243 GDASD 247
>gi|170022873|ref|YP_001719378.1| P4 family phage/plasmid primase [Yersinia pseudotuberculosis YPIII]
gi|169749407|gb|ACA66925.1| phage/plasmid primase, P4 family [Yersinia pseudotuberculosis
YPIII]
Length = 477
Score = 157 bits (398), Expect = 5e-36, Method: Composition-based stats.
Identities = 65/373 (17%), Positives = 132/373 (35%), Gaps = 38/373 (10%)
Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVS-GYF 477
+G +G+ D G + +E ++ ++ F++ E S F ++
Sbjct: 112 RNLIGFSNGVFDTREGLFREHRQEDWLLIASDVEFIQAEEGESLDTHSPAFWKWLNWSTA 171
Query: 478 ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
+ D + M + Q F+ I G GGSGKS L + G ++A
Sbjct: 172 GNARKTDRVLAALYMVMANRYDWQLFLEITGAGGSGKSVLAEICTMLAGKANTVSASMKA 231
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
+ + R ++G ++I+ + + + A IK +TGGD + + Y
Sbjct: 232 LEEPRER---------ALIVGYSLIIMPDMSRYAG-DGAGIKAITGGDKVAIDPKHKPPY 281
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655
S + V N + + RR ++ F + + RD ++K+E + +
Sbjct: 282 STRIPA-VILAVNNNAMSFSDRSGGISRRRVIFNFSQVVPENERDPMLSEKIEAELPVII 340
Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID--------DCCDIGENL 707
+ + +K L + + +A +R+G D+ + D IG
Sbjct: 341 RHLLTRFADQGEAKRLLFEQ-QKSEEALAIKREG-DSLVDFCGYLMASVQCDGLFIGNAS 398
Query: 708 ---WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKR 764
+ L +Y Y + K IS ++ G + +E I K+
Sbjct: 399 IIPFSPRKYLYHAYLAYMQSNGLS--KPISLNRFATDMP--GSMAEYGKEYIRKKSTKGN 454
Query: 765 IIKGLKLKPAFES 777
+ ++L +
Sbjct: 455 MRSNIRLADDADE 467
>gi|320177604|gb|EFW52594.1| DNA primase , phage-associated [Shigella boydii ATCC 9905]
Length = 777
Score = 157 bits (398), Expect = 6e-36, Method: Composition-based stats.
Identities = 71/432 (16%), Positives = 136/432 (31%), Gaps = 65/432 (15%)
Query: 379 NSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFS----ITSDLLDSSSRFLGEQDG 434
S + + +D+ R + + S + S+ I + S +G ++G
Sbjct: 360 ESGAWKVISQSDFARDVAALFQRLGAPFSSGKIASLVETLKLIVPQQQNPSRHLIGFRNG 419
Query: 435 ILDLETGQKVKPTKELYITKSTGTPFVEG----------EPSQEFLDLVSGYFESEEVMD 484
+LD TG KE ++ F +LD +G+ ++ D
Sbjct: 420 VLDTRTGLFSPHCKENWLRTLCEVDFTPPVKGETLETHAPAFWRWLDRAAGHKPAK--RD 477
Query: 485 YFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544
+ M L Q F+ + G GGSGKS L + G+ +A + R
Sbjct: 478 IILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATMLAGDDNATSATIETLESPRER 537
Query: 545 EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604
L+G ++ + + E + A +K +TGGD ++ Y N YS +
Sbjct: 538 ---------AALIGFSLIRLPD-QEKWSGDGAGLKAITGGDAVSVDPKYQNAYSTHIPA- 586
Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKG 662
V N + + RR +++ F + IA RD K+ + + ++ +
Sbjct: 587 VILAVNNNPMRFTDRSGGVSRRRVILHFPEQIAPEERDPQLKDKIARELAVIVRQLMQR- 645
Query: 663 VKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWID--DCCDIGENL---- 707
P + + ++ D + + +
Sbjct: 646 ----------FSDPMSARTLLQSQQNSDEALTIKRDADPAFDFCGYLEALPDTNGMFMGN 695
Query: 708 -----WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKS 762
+ L +Y Y E + +S L + EK +
Sbjct: 696 ANIVPRQPRTYLYHAYLVYMEANG--FKNTLSLTMFGKGL---PVMLKEYGLNYEKRRTN 750
Query: 763 KRIIKGLKLKPA 774
+ + L LK
Sbjct: 751 QGMQTNLTLKEE 762
>gi|317495911|ref|ZP_07954274.1| phage/plasmid primase [Gemella moribillum M424]
gi|316914088|gb|EFV35571.1| phage/plasmid primase [Gemella moribillum M424]
Length = 787
Score = 157 bits (398), Expect = 6e-36, Method: Composition-based stats.
Identities = 104/696 (14%), Positives = 225/696 (32%), Gaps = 114/696 (16%)
Query: 133 QYFVAY-NIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSI 191
Q+ +A ++ TK E TW+ ++ P++ + + K + P+ + K
Sbjct: 115 QHVMALVGVNYDTKCE-TWS------QLSGLPIVKKGNEHIFIKHLDGLPYPVQEAAKEE 167
Query: 192 IPSKTWTNNNNRQYTNREITAFLSC---FGEEFYN----GSHDEWIPVVMAVHHETRGSS 244
K ++ + ++ + E N ++ + V++++ +
Sbjct: 168 KKVKVEYTASDVRLSDEDFKEMFIRYLELDNENLNPGDSEEYNRALSVLLSLARDVCYKD 227
Query: 245 KGKEIARRWS-------KQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKL 297
++A S Y E+N N I K + ++ F +
Sbjct: 228 ISYDVACECSDLLANIGANPDKYREDNLNK---------INHAIKSWQSNSNYFENEKSY 278
Query: 298 IPKGLLASRFSDAYNKAMFSIYK--------------KGHFLYTADTKAWYKKDKNNVYI 343
+ RF NK + + H+ + W K N +
Sbjct: 279 S----MLQRFEIVGNKKDKNFAYLVRCKLNKPISNTSELHWRLFTIGEQWRK---ENTIV 331
Query: 344 WSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEEN-SKA 402
T KI + + ++++ F P + F D+ + N
Sbjct: 332 NKKTGKKIISQMPFYIIA----KFLQENIPIKKGGIHEDTALLFFYDFSKGIYTSNEDYI 387
Query: 403 KSTAQSLEAG---SIFSITSDLLDSS---------SRFLGEQDGILDLETGQKVKPTKEL 450
K+ + LE + ++ L ++ + +G+ + +T +
Sbjct: 388 KTCIKKLEIRYKLTKLKDITEDLRANTKFEKPYRPEHLIAVGNGLFNTKTKLLESFNPKY 447
Query: 451 YITKSTGTPFVEGE------------PSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGN 498
+IT T + +L+ ++ E++ F + A+
Sbjct: 448 FITAKVDTNYNINALKNYEAIKDIYFNYDNWLNSIA--CGDPEIIALFWQLTNEAINPNK 505
Query: 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMG 558
++ + G G +GKST +I G+ + A ++ ++ L L G
Sbjct: 506 TRRKIAIMLGSGTNGKSTFRQMIINLIGDTNISVATPHEL---------QSRFGLTSLEG 556
Query: 559 SRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRN 618
E K+K ++ G+ + L + + + N+ +++
Sbjct: 557 KICNYGDEVGTKPLDEMDKLKSISSGESVNYELKNKDVRNYDFKT-LLIFNSNEIPLIKD 615
Query: 619 PDDAWWRRYIVIPFDKPIAN-RDASFA-QKLETKYTLEAKKWFLKGVKAYISKGLDVD-- 674
+A R ++IPF +D S +KL+ K LE Y + L+ D
Sbjct: 616 KSEAVLNRLLIIPFKANFEGVKDESIKDEKLKDKRILE--------YILYTALNLEFDKF 667
Query: 675 -IPEVCLKAKEEERQGTDTYQAWIDDCCDIG--ENLWEESHSLAKSYSEYREQELNYDRK 731
+P+ + E +Q D+ ++ D G + Y Y + RK
Sbjct: 668 IVPKAVQQQLEVYKQENDSIYNFMLSYIDEGYHRVSCVPISFITNDYENYCYENGYNPRK 727
Query: 732 RISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIK 767
RI + + ++L + K + + E K+ R K
Sbjct: 728 RIG-KQLEIHLNNR-----FKGDIYQYEVKNHRFTK 757
>gi|220925612|ref|YP_002500914.1| P4 family phage/plasmid primase [Methylobacterium nodulans ORS
2060]
gi|219950219|gb|ACL60611.1| phage/plasmid primase, P4 family [Methylobacterium nodulans ORS
2060]
Length = 978
Score = 157 bits (397), Expect = 7e-36, Method: Composition-based stats.
Identities = 58/376 (15%), Positives = 126/376 (33%), Gaps = 38/376 (10%)
Query: 422 LDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFES-- 479
D + + G++D TG+ E Y T T F +L ++ F
Sbjct: 511 FDRHG-KVPCRSGLVDPRTGEIEPIRPEHYCTWVVDTEFDPAARCPLWLQMLDDVFPDRT 569
Query: 480 ----EEVMDYFTRCVGMALLGGNKAQ--RFIHIRGVGGSGKSTLMNLIKYAFGNQ-YVIN 532
+E++ +G A++ Q + + + G GKS L+ ++ FG+ +
Sbjct: 570 ATVRKEIVATLQEVLGCAMVDVKSRQLTKALVLVGGSNVGKSGLLEVLGGMFGDDPISVA 629
Query: 533 AEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEIN-AAKIKQMTGGDCMTARL 591
++ + + P +A L R + + A+ +K + GD + +
Sbjct: 630 LDSLEGTHGKMPFVRRAPWVLHEAFDQR-----------KWHFASGVKAIITGDPVEINV 678
Query: 592 NYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR----------DA 641
G F N + A R IVI + +
Sbjct: 679 KNG-PIISGRVRAPIFWGTNYPPQFKESTRAIVNRMIVIHCRNVFDDHRLVGVAQLASER 737
Query: 642 SFAQK---LETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID 698
+ + + K W L+G++ + +G + +P + + + + +ID
Sbjct: 738 GYDKPSSIVLAKERAGVLNWALEGLRRALDRG-SIAVPAEVRENADAIHKDANIVAGFID 796
Query: 699 DCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEK 758
+C + + ++S + + DR S ++ + G + +
Sbjct: 797 ECIEWDHEMRVPVPDFCAAFSVWWAENKGEDRSIPSNDSIGRAVTALGNERIGLHARETR 856
Query: 759 EWKSKRIIKGLKLKPA 774
+ +R + G+ L PA
Sbjct: 857 DM-HRRYLCGIALNPA 871
>gi|298695297|gb|ADI98519.1| Putative DNA primase [Staphylococcus aureus subsp. aureus ED133]
Length = 790
Score = 157 bits (397), Expect = 7e-36, Method: Composition-based stats.
Identities = 53/357 (14%), Positives = 124/357 (34%), Gaps = 38/357 (10%)
Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE--------FLDLVSGYF 477
+ ++ + + +T Q T + T T +V + E +++ ++
Sbjct: 427 PYLIPVKNDVFNRKTKQLESFTPDYIFTSKIDTSYVRQDIVPEINGWNIDRWIEEIA--C 484
Query: 478 ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
+V+ + + ++ G ++ + + G G +GK T L+ G + + + ++
Sbjct: 485 NDNQVVKLLWQVINDSMNGNYTRKKALFLVGNGNNGKGTFQELLSNVIGYSNIASLKVNE 544
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA-AKIKQMTGGDCMTARLNYGNT 596
+ L L G VI + ++ + K + GD +
Sbjct: 545 FDE---------RFKLSVLEGKTAVIGDDVPVGVYVDDSSNFKSVVTGDPVLVEFKNKPL 595
Query: 597 YSESPASFTPFIV--PNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLE 654
Y A+F ++ N ++ RR +++PF+ +F K + +
Sbjct: 596 YR---ATFKCTVIQSTNGMPKFKDKTGGTLRRLLIVPFNANFNGIKENFKIKEDYIKNQQ 652
Query: 655 AKKWFLKGVKAYISKGLD---VDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEES 711
++ L Y + LD DIP+ K E ++ D + + D
Sbjct: 653 VLEYVL-----YKAINLDFETFDIPDASKKMLEVFKEDNDPVYGFKVNMFDQWTIRKVPK 707
Query: 712 HSLAKSYSEYREQELNYDRKRISTRTVTLNLKQ--KGFIGGIKREKIEKEWKSKRII 766
+ + Y EY ++ +S+ + + + + + + E +KRI
Sbjct: 708 YIVYAFYKEYCDENG---YNALSSNKFYKQFEHYLENYWKTDAQRRYDNEELAKRIY 761
>gi|300718526|ref|YP_003743329.1| Plasmid and phage DNA primase [Erwinia billingiae Eb661]
gi|299064362|emb|CAX61482.1| Plasmid and phage DNA primase [Erwinia billingiae Eb661]
Length = 776
Score = 157 bits (396), Expect = 9e-36, Method: Composition-based stats.
Identities = 62/379 (16%), Positives = 126/379 (33%), Gaps = 60/379 (15%)
Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ--------- 467
I + + R +G ++G+LD T K+ ++ + F +
Sbjct: 401 IVPQQAEPARRLIGFRNGVLDTRTATFSPHRKDYWLRTVSDVDFTPPVTGETLESHAPHF 460
Query: 468 -EFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFG 526
++LD +G E D + M L Q F+ + G GGSGKS + + G
Sbjct: 461 WQWLDRAAGRC--AEKRDIILAALFMVLANRFDWQLFLEVTGPGGSGKSIMAEIATMLAG 518
Query: 527 NQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDC 586
+A + +R ++G ++I+ + E + A IK +TGGD
Sbjct: 519 TDNTTSATIETLESSRER---------AAVIGYSLIILPD-QEKWSGDGAGIKAITGGDA 568
Query: 587 MTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFA 644
++ Y + YS + V N + + RR +++ F + +A RD
Sbjct: 569 VSVDPKYRDAYSTHIPA-VILAVNNNPMRFTDRSGGVSRRRVILHFPEIVAASERDPQLK 627
Query: 645 QKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQA 695
+K+ + + ++ + P+ + + ++ D
Sbjct: 628 EKIRGEMAVIVRQLMQR-----------FSQPQDARALLQSQQNSGEAMRIKRDADPMVD 676
Query: 696 WIDD-CCDIGENLW----------EESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQ 744
+ N + L +Y Y E + +S + L L+
Sbjct: 677 FCGYLFTAPEPNALYMGNASIRPAQPRRYLYHAYLCYMEANG--YKNPLSMKMFGLALE- 733
Query: 745 KGFIGGIKREKIEKEWKSK 763
G + +++ K
Sbjct: 734 -GILREYGLSYLKRRTKQG 751
>gi|213582465|ref|ZP_03364291.1| bacteriophage P4 DNA primase [Salmonella enterica subsp. enterica
serovar Typhi str. E98-0664]
Length = 388
Score = 157 bits (396), Expect = 9e-36, Method: Composition-based stats.
Identities = 63/370 (17%), Positives = 115/370 (31%), Gaps = 58/370 (15%)
Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
R +G ++G+LD TG K ++ F + F +
Sbjct: 22 RRLIGFRNGVLDTATGTFSPHHKSHWLRTLCDVDFTSPVEGETLETHAPHFWRWLDRAAG 81
Query: 479 S-EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
E D + M L Q F+ + G GGSGKS L + G +A
Sbjct: 82 GKPEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNATSATIET 141
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
+ R L+G ++ + + E + A +K +TGGD ++ Y + Y
Sbjct: 142 LESPRER---------AALIGFSLIRLPD-QEKWSGDGAGLKAITGGDAVSVDPKYKDAY 191
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655
S + V N + + RR ++I F + IA RD K+ +
Sbjct: 192 STHIPA-VILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPEERDPQLRDKIARE----- 245
Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWID--DCCDIG 704
++ + P + + ++ D + +
Sbjct: 246 LAIIVRQLMQ------KFSDPMTARTLLQSQQNSDEALSIKRDADPTFDFCGYLEMLPQT 299
Query: 705 ENLWEESHS---------LAKSYSEYREQELNYDRKRISTRTVT----LNLKQKGFIGGI 751
++ + S L +Y Y E R +S + + LK+ G
Sbjct: 300 NGMFMGNASIIPRNYRKYLYHAYLAYMEANG--YRNVLSLKMFGLGLPMMLKEYGLNYEK 357
Query: 752 KREKIEKEWK 761
+ K +
Sbjct: 358 RHTKQGIQTN 367
>gi|238763412|ref|ZP_04624375.1| P4-specific DNA primase [Yersinia kristensenii ATCC 33638]
gi|238763493|ref|ZP_04624455.1| P4-specific DNA primase [Yersinia kristensenii ATCC 33638]
gi|238698275|gb|EEP91030.1| P4-specific DNA primase [Yersinia kristensenii ATCC 33638]
gi|238698356|gb|EEP91110.1| P4-specific DNA primase [Yersinia kristensenii ATCC 33638]
Length = 776
Score = 157 bits (396), Expect = 9e-36, Method: Composition-based stats.
Identities = 68/363 (18%), Positives = 131/363 (36%), Gaps = 50/363 (13%)
Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFV---EGEPSQE----FLDLVSGYFE 478
+G ++G+ + TGQ KE ++ + EGE E F +
Sbjct: 412 RHLIGFRNGVFNTVTGQFSPHRKEYWLRTVNNVDYTTYKEGENLPEHAPYFWQWLDRAAS 471
Query: 479 S-EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
EE + M L Q F+ + G GGSGKS + + G A +
Sbjct: 472 GREEKRQRILAALFMVLANRYDWQLFLEVTGPGGSGKSVMAEIATLLAGKDNTTAATINT 531
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
I +R A ++G ++I+ + E + A IK +TGGD + Y + Y
Sbjct: 532 IESSRERSA---------IVGYSLIILPD-QEKWSGDEAGIKAITGGDAVMVDPKYKDAY 581
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655
S S + V N + + RR +++ F + I RD K+E++ ++
Sbjct: 582 STSIPA-VILAVNNNPMRFSDRSGGVSRRRVILSFPEVIPVNERDPQMKSKIESELSV-I 639
Query: 656 KKWFLK------GVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWI--------DDCC 701
++ ++ + + + + D +A E +R +D + +
Sbjct: 640 VRYLMQRFANPGDARKLLQEQQNSD------EALEIKRN-SDPLVDFCGYLLASAEANGL 692
Query: 702 DIGENL---WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQ--KGFIGGIKREKI 756
+G L +Y + E + K ++ L L Q + + + + K
Sbjct: 693 YMGNGNIIPRNPRKYLYHAYLSFMEARGHL--KPMTLTAFGLALPQILREYGLALLKRKT 750
Query: 757 EKE 759
++
Sbjct: 751 KQG 753
>gi|329768217|ref|ZP_08259718.1| hypothetical protein HMPREF0428_01415 [Gemella haemolysans M341]
gi|328837416|gb|EGF87045.1| hypothetical protein HMPREF0428_01415 [Gemella haemolysans M341]
Length = 814
Score = 157 bits (396), Expect = 1e-35, Method: Composition-based stats.
Identities = 113/765 (14%), Positives = 234/765 (30%), Gaps = 107/765 (13%)
Query: 70 IDSKDEKTANT-----FKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIK--KKKTTEST 122
ID +D ++ ++ I KP + + K + +
Sbjct: 79 IDIEDTGLSSQEVQTIIQEKLASYKYLLYSTISHKPNNPRLRLVLEPSRDIVKDEYKPTI 138
Query: 123 QGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITV 182
Q + +L K TW+ +++ P+ ++ K +
Sbjct: 139 QNVIQLLNIKY----------DKSSCTWS------QLQGLPIAVRDNEFIFIKHLDGLPY 182
Query: 183 PLVKDKKSIIPSKT--WTNNNNRQYTNREITAF------LSCFGEEFYNGSHDEWIPVVM 234
P+ + K T ++ N T+ E T L ++++ + +++
Sbjct: 183 PVQEAVKEEKKVITNYTASDTNTLLTDEEYTEMFKRYLELDYENINSDENNYNKALGILL 242
Query: 235 AVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHH 294
++ ++ + ++A S + K+ + ++I K + F +
Sbjct: 243 SITYDFCYNIISYDVACECSDLLANI--GKNPEKYRQENQDKINHAIKSWENNPNYFDNE 300
Query: 295 GKLIPKGLLASRFSDAYNKA-----MFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLD 349
+ RF NK YK + W W +
Sbjct: 301 KSYS----MLQRFEIVGNKKDKNFSYLVRYKLNKPILNTGELHWRLY--TAGEQWRIENT 354
Query: 350 KITASIMNFLVSMKE----DVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENS----- 400
+ V F L+ P + ++ F D+ + N
Sbjct: 355 TVNEKTGKVTVPQVPFYVIAKFLLTHIPIIKSGANEDTALLFFYDFSKGIYTSNDDYIKT 414
Query: 401 ------------KAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTK 448
K K + L A + F LD + +G+ + +T
Sbjct: 415 CIKKIEIRYKLTKLKDVTEDLRANTRFR-KPQRLD---YLIAVGNGLFNTKTKTLEPFDP 470
Query: 449 ELYITKSTGTPFVEGEPSQ---------EFLDLVSGY-FESEEVMDYFTRCVGMALLGGN 498
+ +IT T + + F + + +E++ + + A+
Sbjct: 471 KHFITAKVDTNYNTKALTNYELIKNTYFNFDEWLKSIACNDDEIVTLLWQLINEAINPNK 530
Query: 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMG 558
++ + G G +GKST ++ G+ + + ++ ++ L L G
Sbjct: 531 TRRKIAIMLGNGTNGKSTFRQMMINLIGDINISVSTPHEL---------QSRFGLTSLEG 581
Query: 559 SRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRN 618
E K+K ++ G+ + + + + N+ +++
Sbjct: 582 KICNYGDEVGTKPLDEMDKLKSISSGESVNYERKNKDVRNYDFKT-LLMFNSNEIPPIKD 640
Query: 619 PDDAWWRRYIVIPFDKPIAN-RDASFA-QKLETKYTLEAKKWFLKGVKAYISKGLDVD-- 674
DA R ++IPF +D S +KL K LE Y + LD D
Sbjct: 641 KSDAVLNRLLIIPFKANFEGVKDESIKDEKLNNKIILE--------YILYTALHLDFDKF 692
Query: 675 -IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWE--ESHSLAKSYSEYREQELNYDRK 731
IPE K +Q D+ +++ D G + L Y + + RK
Sbjct: 693 IIPEAVKKQLLNYKQENDSVFSFMLYYKDKGYHHVSCFPVRYLTDDYENFCYENGYNTRK 752
Query: 732 RIS---TRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773
RI T+ + NL + +K + KE + I G ++P
Sbjct: 753 RIGNAFTKHLNDNLTTSNYSYELKNHRFTKENTDELNIYGRNIQP 797
>gi|323131092|gb|ADX18522.1| bacteriophage P4 DNA primase [Salmonella enterica subsp. enterica
serovar Typhimurium str. 4/74]
Length = 777
Score = 156 bits (394), Expect = 1e-35, Method: Composition-based stats.
Identities = 69/381 (18%), Positives = 120/381 (31%), Gaps = 61/381 (16%)
Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
R +G ++G+LD TG K ++ F + F +
Sbjct: 411 RRLIGFRNGVLDTATGTFSPHHKSHWLRTLCDVDFTPPVEGETLETHAPHFWRWLDRAAG 470
Query: 479 S-EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
E D + M L Q F+ + G GGSGKS L + G +A
Sbjct: 471 GKPEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNATSATIET 530
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
+ R L+G ++ + + E + A +K +TGGD ++ Y + Y
Sbjct: 531 LESPRER---------AALIGFSLIRLPD-QEKWSGDGAGLKAITGGDAVSVDPKYKDAY 580
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655
S + V N + + RR +++ F + IA RD K+ + +
Sbjct: 581 STHIPA-VILAVNNNPMRFTDRSGGVSRRRVILHFPEQIAPEERDPQLRDKIARELAVIV 639
Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWI--------D 698
++ P + + ++ D +
Sbjct: 640 RQLM-----------QKFSDPMTARTLLQSQQNSDEALSIKRDADPAFDFCGYLEALPDP 688
Query: 699 DCCDIGENL---WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755
D IG + L +Y Y + Y R +S KG +K
Sbjct: 689 DGMYIGNANIIPRQPRLYLYHAYLAY-MEAHGY-RNTLSLTMFG-----KGLPAMLKEYG 741
Query: 756 I--EKEWKSKRIIKGLKLKPA 774
+ EK K++ I L L+
Sbjct: 742 LSYEKRRKNQGIQTNLTLREE 762
>gi|301159308|emb|CBW18823.1| bacteriophage P4 DNA primase [Salmonella enterica subsp. enterica
serovar Typhimurium str. SL1344]
Length = 794
Score = 156 bits (394), Expect = 1e-35, Method: Composition-based stats.
Identities = 69/381 (18%), Positives = 120/381 (31%), Gaps = 61/381 (16%)
Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
R +G ++G+LD TG K ++ F + F +
Sbjct: 428 RRLIGFRNGVLDTATGTFSPHHKSHWLRTLCDVDFTPPVEGETLETHAPHFWRWLDRAAG 487
Query: 479 S-EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
E D + M L Q F+ + G GGSGKS L + G +A
Sbjct: 488 GKPEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNATSATIET 547
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
+ R L+G ++ + + E + A +K +TGGD ++ Y + Y
Sbjct: 548 LESPRER---------AALIGFSLIRLPD-QEKWSGDGAGLKAITGGDAVSVDPKYKDAY 597
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655
S + V N + + RR +++ F + IA RD K+ + +
Sbjct: 598 STHIPA-VILAVNNNPMRFTDRSGGVSRRRVILHFPEQIAPEERDPQLRDKIARELAVIV 656
Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWI--------D 698
++ P + + ++ D +
Sbjct: 657 RQLM-----------QKFSDPMTARTLLQSQQNSDEALSIKRDADPAFDFCGYLEALPDP 705
Query: 699 DCCDIGENL---WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755
D IG + L +Y Y + Y R +S KG +K
Sbjct: 706 DGMYIGNANIIPRQPRLYLYHAYLAY-MEAHGY-RNTLSLTMFG-----KGLPAMLKEYG 758
Query: 756 I--EKEWKSKRIIKGLKLKPA 774
+ EK K++ I L L+
Sbjct: 759 LSYEKRRKNQGIQTNLTLREE 779
>gi|294783579|ref|ZP_06748903.1| DNA primase-phage associated [Fusobacterium sp. 1_1_41FAA]
gi|294480457|gb|EFG28234.1| DNA primase-phage associated [Fusobacterium sp. 1_1_41FAA]
Length = 639
Score = 156 bits (394), Expect = 2e-35, Method: Composition-based stats.
Identities = 65/379 (17%), Positives = 130/379 (34%), Gaps = 22/379 (5%)
Query: 393 RQNVEENSKAKSTAQSLEAGSIFSITSD-LLDSSS-RFLGEQDGILDLETGQKVKPTKEL 450
R+ +E+ + +T Q E + D + + ++G L Q +K +E
Sbjct: 274 RKTLEKENIVLNTKQDSEILHLIKTDFRIEEDKNKKYPIAFRNG-WCLYRDQFIK--QEK 330
Query: 451 YITK-STGTPFVEGEPSQEFLDLVSGYFESEE-VMDYFTRCVGMAL-LGGNKAQRFIHIR 507
T + + ++ + + + +E ++ F +G L L F +
Sbjct: 331 IFTPFYMDVDYDPSANDENVINFIKWFCKDDEGLITLFEEILGHILMLERFPHHIFFFVA 390
Query: 508 GVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISET 567
G G +GKST++N++ N + ++ + E L+G + + +
Sbjct: 391 GKGKNGKSTMLNML-----NNWTDGLNSTTALDQFEKETYA-----YDLIGKIVNLGDDI 440
Query: 568 NENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627
++ + IK + GG + AR Y ++ T N ++ RR
Sbjct: 441 DDTYIEKSRVIKVIAGGSKIKARALYTMPVDFK-STATLIFSCNNMPTFKDKSGGMARRV 499
Query: 628 IVIPFDKPIA--NRDASFAQKLETKYTLE-AKKWFLKGVKAYISKGLDVDIPEVCLKAKE 684
+ P + + D KL T +KG+K I+ G ++ I E E
Sbjct: 500 VCFPCNSNVEYGKIDLDLDDKLTTDSAKSTLLNLAIKGMKRIIANGGELTITETSKALTE 559
Query: 685 EERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQ 744
D+ + + E+++ K YS Y+ T++ L +
Sbjct: 560 RYLIENDSIAMFFSETDVNKLCDDMENNTFTKLYSLYQMFCDENGYTPSGKNTLSKKLDE 619
Query: 745 KGFIGGIKREKIEKEWKSK 763
GF + K K
Sbjct: 620 FGFESYTGAGNVRKIRPKK 638
>gi|254559012|ref|YP_003066107.1| hypothetical protein METDI0390 [Methylobacterium extorquens DM4]
gi|254266290|emb|CAX22051.1| hypothetical protein METDI0390 [Methylobacterium extorquens DM4]
Length = 1433
Score = 156 bits (393), Expect = 2e-35, Method: Composition-based stats.
Identities = 45/216 (20%), Positives = 88/216 (40%), Gaps = 28/216 (12%)
Query: 10 AKQAIHNGFKLIPLRLGDKR-PQ-------RLGKWEEQLLSSEKIDKL----PACGFGFV 57
+ + G+ + P +R P + G+++++L + +ID P+ +
Sbjct: 131 GPELVTRGWSVFPQTRDHRRGPGLVDNAALKWGEYKDRLPTLGEIDWWSRFCPSHNVACI 190
Query: 58 CGVGEQPLYAFDIDSKDEKTANTF-KDTFEILHGTPIVRIGQKPKILIPFR---MNKEGI 113
G +A DID D + +N K + L TP R+G+ P+I++ +R +++ G
Sbjct: 191 LGAASGGTWALDIDVSDAELSNAIVKLADDHLGYTPFSRVGRVPRIVLVYRQAPVSEVGA 250
Query: 114 KK----------KKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTT-PPHRFKVEDT 162
+ + E + G +++LG G+ + +H T K + W PH E
Sbjct: 251 DQVIRVSPHRFAARPGEDSPGQIEVLGHGKPVTFFGLHHGTGKYFIWVDRSPHVLGPEHA 310
Query: 163 PLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWT 198
PL++ + + + P K P WT
Sbjct: 311 PLVTRQQYDAFLDAVHALH-PFAKPAVHEAPDAAWT 345
>gi|146312751|ref|YP_001177825.1| plasmid and phage DNA primase [Enterobacter sp. 638]
gi|145319627|gb|ABP61774.1| plasmid and phage DNA primase [Enterobacter sp. 638]
Length = 777
Score = 156 bits (393), Expect = 2e-35, Method: Composition-based stats.
Identities = 61/370 (16%), Positives = 116/370 (31%), Gaps = 58/370 (15%)
Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYF- 477
R +G ++G+LD TG K ++ F + F +
Sbjct: 411 RRLIGFRNGVLDTLTGVFSPHNKSHWLRTLCDVDFTPPVDGETLETHAPNFWRWLDRAAS 470
Query: 478 ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
+ E D + M L Q F+ + G GGSGKS L + G +A
Sbjct: 471 GNAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATLLAGEDNATSATIET 530
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
+ R L+G ++ + + E + A +K +TGGD ++ Y + Y
Sbjct: 531 LESPRER---------AALIGFSLIRLPD-QEKWSGDGAGLKAITGGDAVSVDPKYRDAY 580
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655
S + V N + + RR ++I F + IA RD K+ + +
Sbjct: 581 SAYIPA-VILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPEERDPQLKDKIARELAVIV 639
Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWID--DCCDIG 704
++ + P + + ++ D + +
Sbjct: 640 RQLMQQ-----------FSDPMTARSLLQSQQNSDEALSIKRDADPTFDFCGYLEALPQT 688
Query: 705 ENL---------WEESHSLAKSYSEYREQELNYDRKRISTRTVT----LNLKQKGFIGGI 751
+ + + L +Y Y E + +S + + LK+ G
Sbjct: 689 NGMFMGNANIIPRQPRNYLYHAYLVYMEANG--YKHVLSLKMFGLGLPMMLKEYGLNYDK 746
Query: 752 KREKIEKEWK 761
+ K +
Sbjct: 747 RHTKQGTQTN 756
>gi|260577360|ref|ZP_05845331.1| ATPase-like protein [Rhodobacter sp. SW2]
gi|259020433|gb|EEW23758.1| ATPase-like protein [Rhodobacter sp. SW2]
Length = 814
Score = 156 bits (393), Expect = 2e-35, Method: Composition-based stats.
Identities = 70/433 (16%), Positives = 136/433 (31%), Gaps = 47/433 (10%)
Query: 367 FDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAG----SIFSITSDLL 422
+ +E + + P ++ E S+ K + +++ +
Sbjct: 398 YTGTEWEAIEDHLIRLPVHAYDGADFMTAAGEPSRVKLSRSRVDSVLNECAALCAEPHFF 457
Query: 423 DSSSRFLGEQDGILDLE---TGQKVKPTKELYITKSTG------TPFVEGEPSQEFLDLV 473
++ + G + + T + + P E S L+
Sbjct: 458 ENPPAGINCTSGFIRFDAAGTPHLEPHHRNHRCRHTLPGHWHAGVPGTPPEGS-LLHRLL 516
Query: 474 SGYFES----EEVMDYFTRCVGMALLGGNKA---QRFIHIRGVGG-SGKSTLMNLIKYAF 525
+G F+ + D G A LG R + + G+ +GKS +NL +
Sbjct: 517 TGSFKGDPEAQAKCDLLAEICGSAALGYATHLLQPRAVVLHGMAAENGKSQFLNLARGLL 576
Query: 526 GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGD 585
+ + AS + +R ++ L+G + E + + I + K + GD
Sbjct: 577 PPSAICSVPASQMGDDR---------HVLGLVGKLLNASDELS-AEAIASDAFKAVVTGD 626
Query: 586 CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNP-DDAWWRRYIVIPFDK--PIANRDAS 642
+ R Y + + F N + D RR +VIPF + PI R A
Sbjct: 627 PVQGRDVYKSRVEFRSVAQNLF-ATNTLPSFKGGVDRGVQRRLMVIPFTRTIPIPERVAD 685
Query: 643 FAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCD 702
+++ + W + G I + + IPE C +A + G D AWID C
Sbjct: 686 IGKRIASDEADLLLAWAVHGAARLIRQ-RNFAIPESCHRALLDWVLGEDPVLAWIDACVR 744
Query: 703 IGENLWE----ESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEK 758
+ + + + + E K + + K
Sbjct: 745 VQPIVNGGPMLATRDAHLRFQNWALAEGFKTEKIPAINGFVQRV------QAQVAGIQHK 798
Query: 759 EWKSKRIIKGLKL 771
+ R G+ +
Sbjct: 799 RTSTGRFFLGITV 811
>gi|317057146|ref|YP_004105613.1| phage/plasmid primase, P4 family [Ruminococcus albus 7]
gi|315449415|gb|ADU22979.1| phage/plasmid primase, P4 family [Ruminococcus albus 7]
Length = 558
Score = 155 bits (392), Expect = 2e-35, Method: Composition-based stats.
Identities = 55/357 (15%), Positives = 129/357 (36%), Gaps = 20/357 (5%)
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE-FLDLVSGYFESEE 481
+ + + ++G L L G V + + G + P E +L V ++
Sbjct: 203 EPNEHTIHLKNGTLHLAQGHFVFSQGKQFTMNRLGIEYRSDAPKPERWLKFVQELLNEQD 262
Query: 482 VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQN 541
VM +G L+ +AQ+ + I G GG GKS + ++ G + ++ S +
Sbjct: 263 VMT-LQEYMGYLLIPSTRAQKMLMISGNGGEGKSRVGKVLFEIMGYKNSVSGSVSGL--- 318
Query: 542 RPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGD-CMTARLNYGNTYSES 600
A + ++L+G +I + + + +KQ+ + M ++
Sbjct: 319 --DNGAAARFNKVKLLGKLCMIDDDMDMSALEKTEFLKQLITAEIPMEIEPKGSPSFQAL 376
Query: 601 PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR---DASFAQKLETKYTLEAKK 657
+ N + + + ++RR +++ KP+ D +KL + +
Sbjct: 377 LYTRVIAFGNNPISALYDRSEGFFRRQMIL-VAKPVPKDRTADKHLTEKLLAE-KEGIFR 434
Query: 658 WFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD--CCDIGENLWEESHSLA 715
W L+G++ I+ + I + + + + + +++ + S L
Sbjct: 435 WCLEGLERLIANDFEFTISDQAKENLKRSERECNNIIPFMESEHDFKFDASGQIHSQELY 494
Query: 716 KSYSEYREQELNYDRKRISTRTVTLNLKQKG--FIGGIKREKIEKEWKSKRIIKGLK 770
+Y + +S RT + LK + + ++ + R G++
Sbjct: 495 WAYQSWCRLN---SLDELSRRTFSGYLKSHADDYGITYSENAVNEQGRRARGFLGMR 548
>gi|323946009|gb|EGB42047.1| poxvirus D5 protein [Escherichia coli H120]
Length = 774
Score = 155 bits (392), Expect = 2e-35, Method: Composition-based stats.
Identities = 71/432 (16%), Positives = 135/432 (31%), Gaps = 65/432 (15%)
Query: 379 NSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFS----ITSDLLDSSSRFLGEQDG 434
S + + +D+ R + + S + S+ I + S +G ++G
Sbjct: 357 ESGAWKVISQSDFARDVAALFQRLGAPFSSGKIASLVETLKLIVPQQQNPSRHLIGFRNG 416
Query: 435 ILDLETGQKVKPTKELYITKSTGTPFVEG----------EPSQEFLDLVSGYFESEEVMD 484
+LD TG KE ++ F +LD +G+ ++ D
Sbjct: 417 VLDTRTGLFSPHCKENWLRTLCEVDFTPPVKGETLETHAPAFWRWLDRAAGHKPAK--RD 474
Query: 485 YFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544
+ M L Q F+ + G GGSGKS L + G +A + R
Sbjct: 475 IILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNATSATIETLESPRER 534
Query: 545 EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604
L+G ++ + + E + A +K +TGGD ++ Y N YS +
Sbjct: 535 ---------AALIGFSLIRLPD-QEKWSGDGAGLKAITGGDAVSVDPKYQNAYSTHIPA- 583
Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKG 662
V N + + RR +++ F + IA RD K+ + + ++ +
Sbjct: 584 VILAVNNNPMRFTDRSGGVSRRRVILHFPEQIAPEERDPQLKDKIARELAVIVRQLMQR- 642
Query: 663 VKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWID--DCCDIGENL---- 707
P + + ++ D + + +
Sbjct: 643 ----------FSDPMSARTLLQSQQNSDEALTIKRDADPAFDFCGYLEALPDTNGMFMGN 692
Query: 708 -----WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKS 762
+ L +Y Y E + +S L + EK +
Sbjct: 693 ANIVPRQPRTYLYHAYLVYMEANG--FKNTLSLTMFGKGL---PVMLKEYGLNYEKRRTN 747
Query: 763 KRIIKGLKLKPA 774
+ + L LK
Sbjct: 748 QGMQTNLTLKEE 759
>gi|300957418|ref|ZP_07169632.1| nucleoside triphosphatase, D5 family [Escherichia coli MS 175-1]
gi|300315853|gb|EFJ65637.1| nucleoside triphosphatase, D5 family [Escherichia coli MS 175-1]
Length = 774
Score = 154 bits (390), Expect = 4e-35, Method: Composition-based stats.
Identities = 66/400 (16%), Positives = 126/400 (31%), Gaps = 62/400 (15%)
Query: 379 NSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFS----ITSDLLDSSSRFLGEQDG 434
S + + +D+ R + + S + S+ I + S +G ++G
Sbjct: 357 ESGAWKVISQSDFARDVAALFQRLGAPFSSGKIASLVETLKLIVPQQQNPSRHLIGFRNG 416
Query: 435 ILDLETGQKVKPTKELYITKSTGTPFVEG----------EPSQEFLDLVSGYFESEEVMD 484
+LD TG KE ++ F +LD +G+ ++ D
Sbjct: 417 VLDTRTGLFSPHCKENWLRTLCEVDFTPPVKGETLETHAPAFWRWLDRAAGHKPAK--RD 474
Query: 485 YFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544
+ M L Q F+ + G GGSGKS L + G +A + R
Sbjct: 475 IILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNATSATIETLESPRER 534
Query: 545 EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604
L+G ++ + + E + A +K +TGGD ++ Y N YS +
Sbjct: 535 ---------AALIGFSLIRLPD-QEKWSGDGAGLKAITGGDAVSVDPKYQNAYSTHIPA- 583
Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKG 662
V N + + RR +++ F + IA RD K+ + + ++ +
Sbjct: 584 VILAVNNNPMRFTDRSGGVSRRRVILHFPEQIAPEERDPQLKDKIARELAVIVRQLMQR- 642
Query: 663 VKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWID--DCCDIGENL---- 707
P + + ++ D + + +
Sbjct: 643 ----------FSDPMSARTLLQSQQNSDEALTIKRDADPAFDFCGYLEALPDTNGMFMGN 692
Query: 708 -----WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNL 742
+ L +Y Y E + +S L
Sbjct: 693 ANIVPRQPRTYLYHAYLVYMEANG--YKNTLSLTMFGKGL 730
>gi|260858430|ref|YP_003232321.1| putative DNA primase [Escherichia coli O26:H11 str. 11368]
gi|257757079|dbj|BAI28581.1| putative DNA primase [Escherichia coli O26:H11 str. 11368]
Length = 777
Score = 154 bits (390), Expect = 4e-35, Method: Composition-based stats.
Identities = 66/400 (16%), Positives = 126/400 (31%), Gaps = 62/400 (15%)
Query: 379 NSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFS----ITSDLLDSSSRFLGEQDG 434
S + + +D+ R + + S + S+ I + S +G ++G
Sbjct: 360 ESGAWKVISQSDFARDVAALFQRLGAPFSSGKIASLVETLKLIVPQQQNPSRHLIGFRNG 419
Query: 435 ILDLETGQKVKPTKELYITKSTGTPFVEG----------EPSQEFLDLVSGYFESEEVMD 484
+LD TG KE ++ F +LD +G+ ++ D
Sbjct: 420 VLDTRTGLFSPHCKENWLRTLCEVDFTPPVKGETLETHAPAFWRWLDRAAGHKPAK--RD 477
Query: 485 YFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544
+ M L Q F+ + G GGSGKS L + G +A + R
Sbjct: 478 IILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNATSATIETLESPRER 537
Query: 545 EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604
L+G ++ + + E + A +K +TGGD ++ Y N YS +
Sbjct: 538 ---------AALIGFSLIRLPD-QEKWSGDGAGLKAITGGDAVSVDPKYQNAYSTHIPA- 586
Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKG 662
V N + + RR +++ F + IA RD K+ + + ++ +
Sbjct: 587 VILAVNNNPMRFTDRSGGVSRRRVILHFPEQIAPEERDPQLKDKIARELAVIVRQLMQR- 645
Query: 663 VKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWID--DCCDIGENL---- 707
P + + ++ D + + +
Sbjct: 646 ----------FSDPMSARTLLQSQQNSDEALTIKRDADPAFDFCGYLEALPDTNGMFMGN 695
Query: 708 -----WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNL 742
+ L +Y Y E + +S L
Sbjct: 696 ANIVPRQPRTYLYHAYLVYMEANG--YKNTLSLTMFGKGL 733
>gi|313576893|gb|ADR67065.1| bacteriophage P4 DNA primase [Klebsiella pneumoniae subsp.
pneumoniae]
Length = 777
Score = 154 bits (390), Expect = 4e-35, Method: Composition-based stats.
Identities = 60/348 (17%), Positives = 110/348 (31%), Gaps = 54/348 (15%)
Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
R +G ++G+LD +G +K ++ F + F +
Sbjct: 411 RRLIGFRNGVLDTSSGIFSPHSKSHWLRTLCDVDFTPPVEGETLETHAPNFWRWLDRAAS 470
Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
+ D + M L Q F+ + G GGSGKS L + G +A+
Sbjct: 471 RNPTKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNATSADIDT 530
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
+ R L+G ++ + + E + A +K +TGGD ++ Y N Y
Sbjct: 531 LEDPRKR---------ASLIGFSLIRLPD-QEKWSGDGAGLKAITGGDAVSVDPKYQNPY 580
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655
S + V N + + RR ++I F + IA RD K+ + +
Sbjct: 581 STHIPA-VILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPEERDPQLRDKIARELAVIV 639
Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWI--------D 698
++ + P + + ++ D +
Sbjct: 640 RQLMQQ-----------FSDPMSARALLQSQQNSDEALSIKRDADPTFDFCGYLEALPEP 688
Query: 699 DCCDIGENL---WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLK 743
D +G + L +Y Y + Y R +S L
Sbjct: 689 DGMYMGNANIIPRQPRLYLYHAYLVY-MEAHGY-RNALSLTMFGKGLS 734
>gi|213613130|ref|ZP_03370956.1| bacteriophage P4 DNA primase [Salmonella enterica subsp. enterica
serovar Typhi str. E98-2068]
Length = 649
Score = 154 bits (390), Expect = 4e-35, Method: Composition-based stats.
Identities = 50/244 (20%), Positives = 86/244 (35%), Gaps = 21/244 (8%)
Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
R +G ++G+LD TG K ++ F + F +
Sbjct: 411 RRLIGFRNGVLDTATGTFSPHHKSHWLRTLCDVDFTSPVEGETLETHAPHFWRWLDRAAG 470
Query: 479 S-EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
E D + M L Q F+ + G GGSGKS L + G +A
Sbjct: 471 GKPEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNATSATIET 530
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
+ R L+G ++ + + E + A +K +TGGD ++ Y + Y
Sbjct: 531 LESPRER---------AALIGFSLIRLPD-QEKWSGDGAGLKAITGGDAVSVDPKYKDAY 580
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655
S + V N + + RR ++I F + IA RD K+ + +
Sbjct: 581 STHIPA-VILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPEERDPQLRDKIARELAIIV 639
Query: 656 KKWF 659
++
Sbjct: 640 RQLM 643
>gi|56416267|ref|YP_153342.1| hypothetical protein SPA4299 [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|197365190|ref|YP_002144827.1| hypothetical protein SSPA3993 [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|56130524|gb|AAV80030.1| hypothetical protein SPA4299 [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|197096667|emb|CAR62284.1| hypothetical protein SSPA3993 [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
Length = 777
Score = 154 bits (390), Expect = 4e-35, Method: Composition-based stats.
Identities = 67/381 (17%), Positives = 121/381 (31%), Gaps = 61/381 (16%)
Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
R +G ++G+LD TG K ++ F + F +
Sbjct: 411 RRLIGFRNGVLDTATGTFSPHHKSHWLRTLCDVDFTPPVEGETLETHAPHFWRWLDRAAG 470
Query: 479 S-EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
E D + M L Q F+ + G GGSGKS L + G +A
Sbjct: 471 GKPEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNATSATIET 530
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
+ R L+G ++ + + E + A +K +TGGD ++ Y + Y
Sbjct: 531 LESPRER---------AALIGFSLIRLPD-QEKWSGDGAGLKAITGGDAVSVDPKYKDAY 580
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655
S + V N + + RR +++ F + IA RD K+ + +
Sbjct: 581 STHIPA-VILAVNNNPMRFTDRSGGVSRRRVILHFPEQIAPEERDPQLKNKIARELAVIV 639
Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWI--------D 698
++ + P + + ++ D +
Sbjct: 640 RQLMQR-----------FSDPMTAHALLQSQQNSDEALSIKRDADPTFDFCGYLEALPEP 688
Query: 699 DCCDIGENL---WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755
+ IG + L +Y Y + Y + +S KG +K
Sbjct: 689 EGMYIGNANIIPRQPRLYLYHAYLAY-MEAHGY-KNTLSLTMFG-----KGLPAMLKEYG 741
Query: 756 I--EKEWKSKRIIKGLKLKPA 774
+ EK K++ I L L+
Sbjct: 742 LSYEKRRKNQGIQTNLALREE 762
>gi|253689633|ref|YP_003018823.1| phage/plasmid primase, P4 family [Pectobacterium carotovorum subsp.
carotovorum PC1]
gi|251756211|gb|ACT14287.1| phage/plasmid primase, P4 family [Pectobacterium carotovorum subsp.
carotovorum PC1]
Length = 775
Score = 154 bits (390), Expect = 4e-35, Method: Composition-based stats.
Identities = 55/349 (15%), Positives = 113/349 (32%), Gaps = 54/349 (15%)
Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGY 476
S R +G ++G+ D +G+ +E ++ + + + F ++
Sbjct: 409 SQRRLIGFRNGVFDTASGEFKPHRREHWLHTVNDVDYTPFKAGENLADNAPHFWRWLTRA 468
Query: 477 FES-EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535
+ + + + M L Q F+ + G GGSGKS L + G+ A
Sbjct: 469 AGNHPDKQERILAALFMVLANCYDWQLFLEVTGPGGSGKSILAEITTMLAGDDNTTAATI 528
Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595
+ I +R + ++G ++++ + E + A IK +TGGD + Y +
Sbjct: 529 NTIESSRERSS---------IIGFSLIVLPD-QEKWSGDGAGIKAITGGDAVMVDPKYRD 578
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTL 653
YS + V N + + RR ++I F + I RD +K+ + +
Sbjct: 579 AYSTRIPA-VILAVNNSPMRFSDRSGGVSRRRVIIHFGETIPASERDPKLKEKIRAELAV 637
Query: 654 EAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIG 704
+ + P + + ++ D +
Sbjct: 638 IVRHLM-----------KRFEEPNDARTLLQAQQHSAEALEIKRQADPLVDFCGYLLAHS 686
Query: 705 ENL-----------WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNL 742
+ L +Y + E + +K IS L
Sbjct: 687 DTTGLYMGNANITPRNPRKYLYHAYLSFMESHGH--QKPISLTAFGKVL 733
>gi|309796709|ref|ZP_07691114.1| nucleoside triphosphatase, D5 family [Escherichia coli MS 145-7]
gi|308119721|gb|EFO56983.1| nucleoside triphosphatase, D5 family [Escherichia coli MS 145-7]
Length = 774
Score = 154 bits (390), Expect = 4e-35, Method: Composition-based stats.
Identities = 65/400 (16%), Positives = 126/400 (31%), Gaps = 62/400 (15%)
Query: 379 NSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFS----ITSDLLDSSSRFLGEQDG 434
S + + +D+ R + + S + S+ I + + +G ++G
Sbjct: 357 ESGAWKVISQSDFARDVAALFQRLGAPFSSGKIASLVETLKLIVPQQQNPARHLIGFRNG 416
Query: 435 ILDLETGQKVKPTKELYITKSTGTPFVEG----------EPSQEFLDLVSGYFESEEVMD 484
+LD TG KE ++ F +LD +G+ ++ D
Sbjct: 417 VLDTRTGLFSPHCKENWLRTVCEVDFTPPVKGETLETHAPAFWRWLDRAAGHKPAK--RD 474
Query: 485 YFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544
+ M L Q F+ + G GGSGKS L + G +A + R
Sbjct: 475 IILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNATSATIETLESPRER 534
Query: 545 EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604
L+G ++ + + E + A +K +TGGD ++ Y N YS +
Sbjct: 535 ---------AALIGFSLIRLPD-QEKWSGDGAGLKAITGGDAVSVDPKYQNAYSTHIPA- 583
Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKG 662
V N + + RR +++ F + IA RD K+ + + ++ +
Sbjct: 584 VILAVNNNPMRFTDRSGGVSRRRVILHFPEQIAPEERDPQLKDKIARELAVIVRQLMQR- 642
Query: 663 VKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWID--DCCDIGENL---- 707
P + + ++ D + + +
Sbjct: 643 ----------FSDPMSARTLLQSQQNSDEALTIKRDADPAFDFCGYLEALPDTNGMFMGN 692
Query: 708 -----WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNL 742
+ L +Y Y E + +S L
Sbjct: 693 ANIVPRQPRTYLYHAYLVYMEANG--YKNTLSLTMFGKGL 730
>gi|15921192|ref|NP_376861.1| hypothetical protein ST0954 [Sulfolobus tokodaii str. 7]
gi|15621977|dbj|BAB65970.1| 902aa long conserved hypothetical protein [Sulfolobus tokodaii str.
7]
Length = 902
Score = 154 bits (390), Expect = 4e-35, Method: Composition-based stats.
Identities = 55/317 (17%), Positives = 119/317 (37%), Gaps = 25/317 (7%)
Query: 466 SQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF 525
+ L+ + + + V+ + +G L K ++ + G GG+GKST +NLIK
Sbjct: 526 CPKSLETFKQWVDDKWVLLF--EIIGYTLYPEIKFRKAFMVIGSGGNGKSTYINLIKKIL 583
Query: 526 GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGD 585
G+ Y ++ ++ + L ++E+ + + K++TGGD
Sbjct: 584 GD-YAVSISPRELFDPQNRFIAG------NLYHKLANAVAESKNYTIEDMDRFKRLTGGD 636
Query: 586 CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDD-AWWRRYIVIPFDKPIANRDASFA 644
+TA + + + + + I N VR+ DD A+W R++++ F + D F
Sbjct: 637 WITADVKFKDPITFKNIA-KLIIASNNMPAVRDTDDKAFWHRWVLVEFPHEFKDNDTWFD 695
Query: 645 QKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIG 704
+ + + + G D + + + D+ +++ + G
Sbjct: 696 KVFTEEEINGIVTTSIMAISRAFQMGH-FDFEQNEKEVMDLWLSHIDSVYSFVKTYAEKG 754
Query: 705 --------ENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKI 756
+L E L K Y +Y + + + + L+ I ++
Sbjct: 755 ILTVDPKNGDLVVEKKRLYKMYRDYCN---TMGFRGVGPNSFSRKLRTYFNISTDRKVVG 811
Query: 757 EKEWKSKR--IIKGLKL 771
K+ K R + G+ +
Sbjct: 812 YKDGKPIRRKFLVGIGI 828
>gi|76787223|ref|YP_330673.1| prophage Sa05, P4 family DNA primase [Streptococcus agalactiae
A909]
gi|76562280|gb|ABA44864.1| prophage Sa05, DNA primase, P4 family [Streptococcus agalactiae
A909]
Length = 480
Score = 154 bits (389), Expect = 5e-35, Method: Composition-based stats.
Identities = 53/314 (16%), Positives = 99/314 (31%), Gaps = 29/314 (9%)
Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE------FLDLVSGY-FES 479
+ Q+GI+DL T + + + + IT T + + F D ++
Sbjct: 121 YLIPVQNGIIDLRTKELLPFSPKYVITSKISTAYHAPKRVPTDREGKTFDDWLNSIACND 180
Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539
E++ F + + A+ + +F G G +GK T + G V +
Sbjct: 181 SELVTLFWQIILEAINPNHTRNKFAIFYGDGNNGKGTFQRFLINLIGESNVSALKPVQFA 240
Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599
+ E L+G I E N + + +T GD + +
Sbjct: 241 EKHNLET---------LVGKVCNIGDEAPNEYLKNPSDLMSITSGDTVLVNPKGRPAFE- 290
Query: 600 SPASFTPF--IVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEA 655
A+F F N N W+RR +++PF+ K
Sbjct: 291 --ATFKLFNIFSGNYIPNGGNKTKGWYRRIMIVPFNADFNGEKEKPWIKNDFLGKKK--V 346
Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWI-DDCCDIG--ENLWEESH 712
++ L P+ EE ++ D +W+ ++ + G E
Sbjct: 347 LEYALYKAIN-QESFTHFIEPQAVKGLLEEYQEDNDYLLSWVKNEYMEKGWHELEVVPVF 405
Query: 713 SLAKSYSEYREQEL 726
+ +S Y E
Sbjct: 406 IVTRSLKHYAEDMG 419
>gi|109644386|ref|YP_659416.1| putative P4-specific DNA primase [Haloquadratum walsbyi DSM 16790]
gi|109627353|emb|CAJ51112.1| putative P4-specific DNA primase [Haloquadratum walsbyi DSM 16790]
Length = 649
Score = 154 bits (389), Expect = 5e-35, Method: Composition-based stats.
Identities = 51/316 (16%), Positives = 104/316 (32%), Gaps = 22/316 (6%)
Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMD 484
+G+L+L TG+ + E Y + + + + + E
Sbjct: 229 DPHV-CVDNGVLNLLTGELKPHSPEYYFVDRIPVRYKSNADTSVYERYFDDWTQRETDKR 287
Query: 485 YFTRCVGMALLGGN--KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542
VG AL+ + ++F+ + G +GKS +K S++ ++
Sbjct: 288 TLIEMVGHALVPDANERYKKFLMLTGDTNNGKSVFFRCVKALLNGPDGTEQNVSNVKLSK 347
Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602
AN S+ G+ + E + N A +K +TGGD + ++
Sbjct: 348 LSTQRFANSSVY---GNMANVAGEIDGKKIRNTASLKDITGGDSVEVEPKGTRSF-FETI 403
Query: 603 SFTPFIVPNKHLFVRNPDD-AWWRRYIVI--------------PFDKPIANRDASFAQKL 647
+ T N + + D A R + + PF+K + L
Sbjct: 404 NATMMFAANDPPVIGDRDKQAIASRLVPVNLPYSFVDNPTENDPFEKQRRPESELEDELL 463
Query: 648 ETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENL 707
+ + ++GV+ DV +PE + + D + + +C
Sbjct: 464 TDEALSGLLRLAVEGVQRLEDNSGDVSLPESPRERLRRYERTADPMRQFGAECLRNEAGE 523
Query: 708 WEESHSLAKSYSEYRE 723
+ + + Y E+ E
Sbjct: 524 YVVKEHITEIYEEWTE 539
>gi|307129027|ref|YP_003881043.1| DNA primase [Dickeya dadantii 3937]
gi|306526556|gb|ADM96486.1| DNA primase [Dickeya dadantii 3937]
Length = 589
Score = 154 bits (389), Expect = 6e-35, Method: Composition-based stats.
Identities = 65/413 (15%), Positives = 135/413 (32%), Gaps = 51/413 (12%)
Query: 395 NVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITK 454
+N+ + + + +T+ +G +G+ D +GQ KE ++
Sbjct: 192 AYSQNAIKSAVETMKLSLPVMGVTAR------NLIGFSNGVFDTRSGQFRCHIKEDWLLI 245
Query: 455 STGTPFVEGEP-------SQEFLDLVSGYFES-EEVMDYFTRCVGMALLGGNKAQRFIHI 506
++ PF + F +S + + D + M L Q F+ +
Sbjct: 246 ASELPFSAPAEGETLATHAPSFWKWLSRSVGNNKRKADRVLAALFMVLANRYDWQLFLEV 305
Query: 507 RGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISE 566
G GGSGKS + G ++A + R ++G ++I+ +
Sbjct: 306 TGPGGSGKSVFAEICTMLAGKANTVSASMKALEDPR---------DRALVVGYSLIIMPD 356
Query: 567 TNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRR 626
+ A IK +TGGD ++ + YS + + N + RR
Sbjct: 357 MTRYAG-DGAGIKAITGGDKVSIDPKHKAPYSTRIPAVVLAVNNNAM-TFSDRSGGISRR 414
Query: 627 YIVIPFD--KPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKE 684
++ F P RD A+K+E + + + + K + + + +
Sbjct: 415 RVIFNFSEVVPENERDPMLAEKIEGELAVIIRHLLTRFAK--QDEAKRLLHEQQKSEEAM 472
Query: 685 EERQGTDTYQAWID--------DCCDIGENLWEESHS---LAKSYSEYREQELNYDRKRI 733
++ D+ + D IG L +Y Y K +
Sbjct: 473 AIKREGDSLVDFCGYLMASVLCDGMFIGNAEIVPFSPRRYLYHAYLAYMRANGLN--KPV 530
Query: 734 STRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDNSNIID 786
S ++ G + +E +++ K L L+ +D+ + +
Sbjct: 531 SLTRFGTDMP--GAMAEYGKEYQKRKTK-------LGLRSNVTLNEDSEDWMP 574
>gi|325578236|ref|ZP_08148371.1| bacteriophage P4 DNA primase [Haemophilus parainfluenzae ATCC
33392]
gi|325159972|gb|EGC72101.1| bacteriophage P4 DNA primase [Haemophilus parainfluenzae ATCC
33392]
Length = 589
Score = 154 bits (388), Expect = 7e-35, Method: Composition-based stats.
Identities = 68/365 (18%), Positives = 127/365 (34%), Gaps = 53/365 (14%)
Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPS----QEFLDLVSGYFESEEVM 483
+ +G L+ T + + +E ++ ++ + ++L+ VSG E+++
Sbjct: 236 LIAFNNGTLNRTTLEFLPHYRENWLMSYIPHEYLNSAQNTPYFDKWLEFVSGGKENKK-- 293
Query: 484 DYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP 543
+ + L N Q F + G GGSGKS N+ G Q + D+ + R
Sbjct: 294 NAILAALYAVLTNRNDWQLFFEVTGDGGSGKSVFANIATLLAGAQNTESGRLVDLDEPRG 353
Query: 544 PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPAS 603
E+ +G ++I E + + +K +TGGD + + + S
Sbjct: 354 RES---------FVGKTLLICPEQSRYGG-DGGGLKSITGGDPVNIDPKHRTKFKAVI-S 402
Query: 604 FTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLK 661
IV N+ RR ++ FDK + RD +F K+E + K
Sbjct: 403 AVVLIVNNEATRFTERSGGIERRRVIFHFDKVVPENERDPNFMDKIEREVGGIIYKLI-- 460
Query: 662 GVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWI--------DDCCDIG 704
+ PE A +E+ + +D + +D IG
Sbjct: 461 ---------HTFEQPETAKAALKEQQTSDEALEIKSESDHITEFCGYFYTTPQNDGLYIG 511
Query: 705 ENLW--EESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKS 762
+ L +Y + ++ R + +LKQ GF + + K K
Sbjct: 512 NANQGNKSRTHLYPAYLAFAVASG--ITNTLTLRNFSNSLKQ-GFAQHKNKFEFSKI-KG 567
Query: 763 KRIIK 767
K +
Sbjct: 568 KYGYR 572
>gi|168464122|ref|ZP_02698039.1| bacteriophage P4 DNA primase [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
gi|195633563|gb|EDX51977.1| bacteriophage P4 DNA primase [Salmonella enterica subsp. enterica
serovar Newport str. SL317]
Length = 777
Score = 154 bits (388), Expect = 7e-35, Method: Composition-based stats.
Identities = 66/378 (17%), Positives = 120/378 (31%), Gaps = 61/378 (16%)
Query: 429 LGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE-SE 480
+G ++G+LD TG K ++ F + F + +
Sbjct: 414 IGFRNGVLDTATGTFSPHHKSHWLRTLCDVDFTPPVEGEMLETHAPNFWRWLDRAAGKNP 473
Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540
+ D + M L Q F+ + G GGSGKS L + G +A +
Sbjct: 474 QKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNATSATIETLES 533
Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600
R L+G ++ + + E + A +K +TGGD ++ Y + YS
Sbjct: 534 PRER---------AALIGFSLIRLPD-QEKWSGDGAGLKAITGGDAVSVDPKYKDAYSTH 583
Query: 601 PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKW 658
+ V N + + RR +++ F + IA RD K+ + + ++
Sbjct: 584 IPA-VILAVNNNPMRFTDRSGGVSRRRVILHFPEQIAPEERDPQLKNKIARELAVIVRQL 642
Query: 659 FLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWI--------DDCC 701
P + + ++ D + +
Sbjct: 643 M-----------QKFSDPMTARALLQSQQNSDEALSIKRDADPTFDFCGYLEALPEPEGM 691
Query: 702 DIGENL---WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKI-- 756
IG + L +Y Y + Y R +S KG +K +
Sbjct: 692 YIGNANIIPRQPRLYLYHAYLAY-MEAHGY-RNTLSLTMFG-----KGLPAMLKEYGLSY 744
Query: 757 EKEWKSKRIIKGLKLKPA 774
EK K++ I L L+
Sbjct: 745 EKRRKNQGIQTNLALREE 762
>gi|188588977|ref|YP_001919584.1| putative primase [Clostridium botulinum E3 str. Alaska E43]
gi|188499258|gb|ACD52394.1| putative primase [Clostridium botulinum E3 str. Alaska E43]
Length = 712
Score = 154 bits (388), Expect = 7e-35, Method: Composition-based stats.
Identities = 60/427 (14%), Positives = 131/427 (30%), Gaps = 49/427 (11%)
Query: 381 KSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLET 440
K + F + ++K+ A+ L + S + + ++ +G++D+E
Sbjct: 311 KEVQRMFFKYAINDTDKTPIRSKNFAELLM---LLSEDAREVHDEKCYINCLNGVIDIEN 367
Query: 441 GQKVKPTKELY-------ITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMA 493
+ ++ + + + + EF ++ ++ + G+
Sbjct: 368 NRLLEHGPQYKTEVQFQASLITDPKVWKDKFDKSEFKKFLNDILDNGS-IKTLQEAWGVM 426
Query: 494 LLGGNKA-QRFIHIRGVGGSGKSTLMNLIKYAFGNQ-YVINAEASDIMQNRPPEAGKANP 551
L + Q +G G +GKS ++ + G+ ++ + D +N
Sbjct: 427 LSPHAREVQNCFIYKGEGSNGKSVTFDIQEALIGDNKHICSIGLGDFGENFAIS------ 480
Query: 552 SLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPN 611
+ IV E + +N A K M G+ +T + + T F N
Sbjct: 481 -VAEGKHVNIVRDDELS-GKSVNKA-FKSMCCGEPVTVNRKNKDLVRLG-FNMTMFFGLN 536
Query: 612 KHLFVRNPDDAWWRRYIVIPFDKPIAN------------RDASFAQKLETKYTLEAKKWF 659
+ + ++RR I+IPF+ +D + ++ W
Sbjct: 537 RMPSASDKSTGFFRRPIIIPFNTSFGTEKEVAEGTRDKLKDTQISDRIINNELDLVFTWA 596
Query: 660 LKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE--NLWEESHSLAKS 717
G+ S V + EE R D+ A+ + I + +
Sbjct: 597 YYGLNRVKSNNWKVTVSAAAENEMEEYRAEVDSAYAFFKEKITIVPKKGMKIPKKDIYDI 656
Query: 718 YSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFES 777
Y+ + + ++ + G K S R + L E
Sbjct: 657 YNNWCTENH---IAPMNQTHLGRQFASFG--------VKSKVSNSVRYYLDI-LVDDLEP 704
Query: 778 VDDNSNI 784
V +I
Sbjct: 705 VPTQKDI 711
>gi|294637020|ref|ZP_06715338.1| putative P4-specific DNA primase [Edwardsiella tarda ATCC 23685]
gi|291089789|gb|EFE22350.1| putative P4-specific DNA primase [Edwardsiella tarda ATCC 23685]
Length = 774
Score = 154 bits (388), Expect = 7e-35, Method: Composition-based stats.
Identities = 68/438 (15%), Positives = 140/438 (31%), Gaps = 71/438 (16%)
Query: 379 NSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFS----ITSDLLDSSSRFLGEQDG 434
+ + + + D+ R + + S + S+ I + + + +G ++G
Sbjct: 357 EAGAWKVIYYADFARDVAALFQRLDAPFSSAKIASLVETLKLIVPQQQNPARQLIGFRNG 416
Query: 435 ILDLETGQKVKPTKELYITKSTGTPFVEG----------EPSQEFLDLVSGYFESEEVMD 484
+LD TG K+ ++ + + +LD +G+ + E D
Sbjct: 417 VLDTRTGLFSPHDKKHWLRTLCEVDYTQPVDGESLETHAPAFWRWLDRAAGF--NPEKRD 474
Query: 485 YFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544
+ M Q F+ + G GGSGKS L + G +A + R
Sbjct: 475 IILAALFMVQANRYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNATSATIEMLESPRER 534
Query: 545 EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604
L+G ++ + + E + A +K +TGGD ++ Y N YS +
Sbjct: 535 ---------AALIGFSLIRLPD-QEKWSGDGAGLKAITGGDAVSVDPKYQNAYSTHIPA- 583
Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKG 662
V N + + RR +++ F IA RD +K+ ++ + ++ +
Sbjct: 584 VILAVNNNPMRFTDRSGGVSRRRVILHFPDQIAPEERDTQLKEKIASELAVIVRQLMQR- 642
Query: 663 VKAYISKGLDVDIPEVCLKAKEEERQGT-----------------------DTYQAWIDD 699
P + ++ DT ++ +
Sbjct: 643 ----------FSDPMSARTLLQSQQNSDEALTIKRDADSAFDFCGYLKVLPDTSGMFMGN 692
Query: 700 CCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKE 759
+ + L +Y Y E + +S L + + EK
Sbjct: 693 ANIV---PRQPRTYLYHAYLVYMEANG--YKNTLSLTMFGKGL---PLMLKEYGLQYEKR 744
Query: 760 WKSKRIIKGLKLKPAFES 777
++ + L L+ S
Sbjct: 745 RTNQGMQTNLALREESNS 762
>gi|269140755|ref|YP_003297456.1| hypothetical protein ETAE_3414 [Edwardsiella tarda EIB202]
gi|267986416|gb|ACY86245.1| hypothetical protein ETAE_3414 [Edwardsiella tarda EIB202]
Length = 775
Score = 154 bits (388), Expect = 7e-35, Method: Composition-based stats.
Identities = 68/381 (17%), Positives = 122/381 (32%), Gaps = 61/381 (16%)
Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
R +G ++G+LD TG K ++ F + F +
Sbjct: 411 RRLIGFRNGVLDTSTGIFSPHCKSHWLRTLCDVDFTPPVAGETLETHAPNFWRWLDRAAG 470
Query: 479 S-EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
+ D + M L Q F+ + G GGSGKS L + G +A+
Sbjct: 471 GRADKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATLLAGADNATSADIDT 530
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
+ R L+G ++ + + E + A +K +TGGD ++ Y N Y
Sbjct: 531 LEDPRKR---------ASLIGFSLIRLPD-QEKWSGDGAGLKAITGGDAVSVDPKYQNPY 580
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655
S + V N + + RR +++ F + IA RD K+ + +
Sbjct: 581 STHIPA-VILAVNNNPMRFTDRSGGVSRRRVILHFPEQIAPEERDPQLKDKIACELAVIV 639
Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWI--------D 698
++ + P + + ++ D +
Sbjct: 640 RQLMQQ-----------FSDPMTARTLLQAQQNSDEALCIKRDADPAFDFCGYLEALPEP 688
Query: 699 DCCDIGENL---WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755
D IG + L +Y Y + Y + +S KG +K
Sbjct: 689 DGMYIGNANIIPRQPRLYLYHAYLAY-MEAHGY-KNTLSLTMFG-----KGLPAMLKEYG 741
Query: 756 I--EKEWKSKRIIKGLKLKPA 774
+ EK K++ I L L+
Sbjct: 742 VNYEKRRKNQGIQTNLALREE 762
>gi|139474571|ref|YP_001129287.1| phage replication protein [Streptococcus pyogenes str. Manfredo]
gi|134272818|emb|CAM31096.1| putative phage replication protein [Streptococcus pyogenes str.
Manfredo]
Length = 500
Score = 154 bits (388), Expect = 7e-35, Method: Composition-based stats.
Identities = 53/314 (16%), Positives = 98/314 (31%), Gaps = 29/314 (9%)
Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE------FLDLVSGY-FES 479
+ Q+GI+DL T + + + + IT T + + F D ++
Sbjct: 141 YLIPVQNGIIDLRTKELLPFSPKYVITSKISTAYHAPKRVPTDREGKTFDDWLNSIACND 200
Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539
E++ F + + A+ + +F G G +GK T + G V + +
Sbjct: 201 SELVTLFWQIILEAINPNHTRNKFAIFYGDGNNGKGTFQRFLINLIGESNVSALKPAQFA 260
Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599
+ E L+G I E N + + +T GD + +
Sbjct: 261 EKHNLET---------LVGKVCNIGDEAPNEYLKNPSDLMSITSGDTVLVNPKGRPAFE- 310
Query: 600 SPASFTPF--IVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEA 655
A+F F N N W+RR +++PF+ E
Sbjct: 311 --ATFKLFNIFSGNYIPNGGNKTKGWYRRIMIVPFNADFNGEKEKPWIKNDFLAN--KEV 366
Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWI-DDCCDIG--ENLWEESH 712
++ L P+ EE ++ D +W+ + + G E
Sbjct: 367 LEYALYKAIN-QKPFTHFIEPQAVKGLLEEYQEDNDYLLSWVKHEYMERGWHELDVVPVF 425
Query: 713 SLAKSYSEYREQEL 726
+S Y E
Sbjct: 426 IATRSLKHYAEDMG 439
>gi|194444462|ref|YP_002043737.1| bacteriophage P4 DNA primase [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
gi|194403125|gb|ACF63347.1| bacteriophage P4 DNA primase [Salmonella enterica subsp. enterica
serovar Newport str. SL254]
Length = 776
Score = 153 bits (387), Expect = 8e-35, Method: Composition-based stats.
Identities = 65/400 (16%), Positives = 126/400 (31%), Gaps = 62/400 (15%)
Query: 379 NSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFS----ITSDLLDSSSRFLGEQDG 434
S + + +D+ R + + S + S+ I + + +G ++G
Sbjct: 359 ESGAWKVISQSDFSRDVAALFQRLGAPFSSGKIASLVETLKLIVPQQQNPARHLIGFRNG 418
Query: 435 ILDLETGQKVKPTKELYITKSTGTPFVEG----------EPSQEFLDLVSGYFESEEVMD 484
+LD TG KE ++ F +LD +G+ ++ D
Sbjct: 419 VLDTRTGLFSPHCKENWLRTLCEVDFTPPVKGETLETHAPAFWRWLDRAAGHKPAK--RD 476
Query: 485 YFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544
+ M L Q F+ + G GGSGKS L + G +A + R
Sbjct: 477 IILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNATSATIETLESPRER 536
Query: 545 EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604
L+G ++ + + E + A +K +TGGD ++ Y N YS +
Sbjct: 537 ---------AALIGFSLIRLPD-QEKWSGDGAGLKAITGGDAVSVDPKYQNAYSTHIPA- 585
Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKG 662
V N + + RR +++ F + IA RD K+ + + ++ +
Sbjct: 586 VILAVNNNPMRFTDRSGGVSRRRVILHFPEQIAPEERDPQLKDKIARELAVIVRQLMQR- 644
Query: 663 VKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWID--DCCDIGENL---- 707
P + + ++ D + + +
Sbjct: 645 ----------FSDPMSARTLLQSQQNSDEALTIKRDADPAFDFCGYLEALPDTNGMFMGN 694
Query: 708 -----WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNL 742
+ L +Y Y E + +S L
Sbjct: 695 ANIVPRQPRTYLYHAYLVYMEANG--YKNTLSLTMFGKGL 732
>gi|304398649|ref|ZP_07380521.1| P4 alpha zinc-binding domain protein [Pantoea sp. aB]
gi|304353860|gb|EFM18235.1| P4 alpha zinc-binding domain protein [Pantoea sp. aB]
Length = 771
Score = 153 bits (387), Expect = 9e-35, Method: Composition-based stats.
Identities = 61/416 (14%), Positives = 137/416 (32%), Gaps = 60/416 (14%)
Query: 382 SPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIF----SITSDLLDSSSRFLGEQDGILD 437
+ + RR+ K ++ + GS+ + + + S R +G ++G+ D
Sbjct: 361 AWQVMEAKTLRREIAALFQKVRAPFSAAGIGSVLDTLKLMVPQMGEPSRRLIGFRNGVYD 420
Query: 438 LETGQKVKPTKELYITKSTGTPFVEGEPSQE-------FLDLVSGYFE-SEEVMDYFTRC 489
TG +E ++ + P + F ++ + + +
Sbjct: 421 TTTGTFGPHRRENWLRTVNSVDYSAPRPGENLADHAPYFYRWLTRAAGHNHDKQERILAA 480
Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549
+ M L Q F+ + G GGSGKS + ++ G +A + +R
Sbjct: 481 LFMVLANRYDWQMFLEVTGPGGSGKSVMASIATLLAGKDNTTSATIDTLESSRER----- 535
Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609
++G ++I+ + E + A IK +TGGD + Y + YS + V
Sbjct: 536 ----ASVVGFSLIILPD-QEKWSGDGAGIKAITGGDAVAIDPKYRDAYSTHIPA-VILAV 589
Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYI 667
N + + RR +++ F + I RD K+ T+ + + +
Sbjct: 590 NNNPMRFSDRSGGVSRRRVILTFPEVIPAKERDPQLLDKVSTELAVIVRHLMQR------ 643
Query: 668 SKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWI---------DDCCDIGENLW- 708
P+ + + + ++ D + + N+
Sbjct: 644 -----FASPDEARELLQAQQSSGEALEIKRQADPLVDFCGYLMPLSTPNGLFIGNANIRP 698
Query: 709 -EESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSK 763
L +Y + E + + +S + Q + +R +++ +
Sbjct: 699 INPKRYLYHAYLSFMESRGH--QHPLSLTAFGQAVPQT--LKEYERVLLKRRTNNG 750
>gi|327198746|emb|CCA61447.1| unnamed protein product [Diadromus pulchellus ascovirus 4a]
Length = 925
Score = 153 bits (386), Expect = 1e-34, Method: Composition-based stats.
Identities = 64/415 (15%), Positives = 137/415 (33%), Gaps = 29/415 (6%)
Query: 375 DNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSIT-SDLLDSSSRFLGEQD 433
+ ++ ++ + E K K+ + I +D + +
Sbjct: 510 NKMLTTRIKKYVPMLTEKETKYCETQKNKAGLRMAFIEHIVDNDFESKIDENLDVFATAN 569
Query: 434 GILDLETGQKVKPTKELYITKSTGTPFVEGEPS---QEFLDLVSGYFESEEVMDYFTRCV 490
+ D+ G K ++ +TG + E + F + D +
Sbjct: 570 CVYDVGEGALRKARPHDFVYTNTGWDYDERAADEHLPAVREFFERVFPVAQERDVVVTYL 629
Query: 491 GMALLGGNKAQRFIHIRG--VGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGK 548
+ G ++ + G +GK+TLM L++ FG+ Y + +
Sbjct: 630 ASLIHGYRTDKKLLAFTDKRNGNNGKTTLMTLLRTFFGD-YTKTNNNFFLKGAFAKDKDA 688
Query: 549 ANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGD--CMTARLNYGNTYSESPASFTP 606
+ L G R++I E ++ ++ +K +TGG + R
Sbjct: 689 HDGGTATLKGKRLLICDELKKSMRLDEGTVKNITGGANQELQGRRMGKEDVFRLTVQCGV 748
Query: 607 FIVPNK--HLFVRNPDDAWWRRYIVIPFDKPIA-----------NRDASFAQKLETKYTL 653
++ N+ D+A+ R +++PF RD + + K + +
Sbjct: 749 ILIFNEGDCPKFDATDNAFMERLVIVPFRSKFVGGEADPDTYTFQRDCNISDKFKL-WRS 807
Query: 654 EAKKWFLKGVKAYISKGL-DVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESH 712
K F+ + G+ D+++P + K E + + W+ D E + +
Sbjct: 808 ALLKHFISHCR---KNGIADMEMPSSMVDWKNEILEENNVVAEWLWDAVRPQEGSFVQLA 864
Query: 713 SLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG-FIGGIKREKIEKEWKSKRII 766
L + Y + E + K I R + KG ++ I+ K R +
Sbjct: 865 ELRERYKKDHPHERAFKNKDI-ERMINSAFNAKGAYVKDHHNYYIDGARKQGRRV 918
Score = 57.0 bits (136), Expect = 1e-05, Method: Composition-based stats.
Identities = 44/295 (14%), Positives = 74/295 (25%), Gaps = 56/295 (18%)
Query: 22 PLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTF 81
P+ G K P G +E + G G +CG + D D +F
Sbjct: 12 PVNAGTKVPAVKGW----PRLAESVAAKRGQGLGALCGEK-GGFFVVDCDLLKSDAPESF 66
Query: 82 ----KDTFEILHGTPI--------VRIGQKPKILIPFRMNKEGIKKK-----------KT 118
+ +++ P R G L + +K
Sbjct: 67 VAGTEAWLDLVGEMPAHVEYPQVRTRSG----GLHAYFAWDPRVKSSVQRYRVCDLFEGE 122
Query: 119 TESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQ 178
+ +DI+ G+Y V P Y W P E ++ LF
Sbjct: 123 ADDRTVKIDIIADGRYIVCPPT-PG----YAWLHNSQYVSPPPMP---RELLDLLFPEPA 174
Query: 179 EITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAV-H 237
++ K R DEW+ VV AV
Sbjct: 175 DVDRARALCTTFRNVDKATLAYVVEGIPARRADV-------------RDEWMRVVWAVAD 221
Query: 238 HETRGSSKGKEIARRWSKQGSTYD-EENFNYKWD-TFDFEEIGDTAKKRSTFTSL 290
+ ++A +S++ Y E+ + + G
Sbjct: 222 TAAKNGYDALDVADAFSRRSHKYAGPEDVEAMYRQSNGAVTFGTLVHFSERGLPR 276
>gi|218698910|ref|YP_002406539.1| putative DNA primase from prophage [Escherichia coli IAI39]
gi|218368896|emb|CAR16647.1| putative DNA primase from prophage (possibly fragment) [Escherichia
coli IAI39]
Length = 545
Score = 153 bits (386), Expect = 1e-34, Method: Composition-based stats.
Identities = 62/362 (17%), Positives = 126/362 (34%), Gaps = 38/362 (10%)
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSG 475
+++ +G +G+ D TG + K ++ ++ PF + F +
Sbjct: 173 NTARNLIGFSNGVFDTRTGNFREHNKNDWLLIASELPFSPPAEGETLATHAPNFWKWLRR 232
Query: 476 -YFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
E++ D + M L Q FI + G GGSGKS + + G ++A
Sbjct: 233 SVAENDRKADRVLAALFMVLANRYDWQLFIEVTGPGGSGKSVMAEICTMLAGKANTVSAS 292
Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
+ R ++G ++I+ + + A IK +TGGD + +
Sbjct: 293 MKALEDARER---------ALVVGFSLIIMPDMTRYAG-DGAGIKAITGGDKVAIDPKHK 342
Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFD--KPIANRDASFAQKLETKYT 652
YS + + N + RR ++ F P RD+ A+K+E +
Sbjct: 343 APYSTRIPAVVLAVNNNAM-SFSDRSGGISRRRVIFNFSEVVPENERDSMLAEKIEGELA 401
Query: 653 LEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID--------DCCDIG 704
+ + + ++ L + + +A +R+G D+ + D +G
Sbjct: 402 VVIRHLLTRFADQDEARRLLYEQ-QKSEEALAIKREG-DSLVDFCGYLMASVMCDGLLVG 459
Query: 705 ENLWEESHS---LAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWK 761
L +Y Y K ++ ++ G + RE ++++ K
Sbjct: 460 NAEIVPFSPRRYLYHAYLAYMRAHG--FGKPVTLTRFGKDMP--GAMAEYGREYMKRKTK 515
Query: 762 SK 763
Sbjct: 516 HG 517
>gi|301022218|ref|ZP_07186133.1| nucleoside triphosphatase, D5 family [Escherichia coli MS 69-1]
gi|300397631|gb|EFJ81169.1| nucleoside triphosphatase, D5 family [Escherichia coli MS 69-1]
Length = 605
Score = 153 bits (386), Expect = 1e-34, Method: Composition-based stats.
Identities = 62/362 (17%), Positives = 125/362 (34%), Gaps = 38/362 (10%)
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSG 475
+++ +G +G+ D TG + K ++ ++ PF + F +
Sbjct: 233 NTARNLIGFSNGVFDTRTGNFREHNKNDWLLIASELPFSPPAEGETLATHAPNFWKWLRR 292
Query: 476 -YFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
E++ D + M L Q FI + G GGSGKS + + G ++A
Sbjct: 293 SVAENDRKADRVLAALFMVLANRYDWQLFIEVTGPGGSGKSVMAEICTMLAGKANTVSAS 352
Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
+ R ++G ++I+ + + A IK +TGGD + +
Sbjct: 353 MKALEDARER---------ALVVGFSLIIMPDMTRYAG-DGAGIKAITGGDKVAIDPKHK 402
Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFD--KPIANRDASFAQKLETKYT 652
YS + + N + RR ++ F P RD A+K+E +
Sbjct: 403 APYSTRIPAVVLAVNNNAM-SFSDRSGGISRRRVIFNFSEVVPENERDPMLAEKIEGELA 461
Query: 653 LEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID--------DCCDIG 704
+ + + ++ L + + +A +R+G D+ + D +G
Sbjct: 462 VVIRHLLTRFANQDEARRLLYEQ-QKSEEALAIKREG-DSLVDFCGYLMASVMCDGLLVG 519
Query: 705 ENLWEESHS---LAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWK 761
L +Y Y K ++ ++ G + RE ++++ K
Sbjct: 520 NAEIVPFSPRRYLYHAYLAYMRAHG--FGKPVTLTRFGKDMP--GAMAEYGREYMKRKTK 575
Query: 762 SK 763
Sbjct: 576 HG 577
>gi|238753953|ref|ZP_04615313.1| P4-specific DNA primase [Yersinia ruckeri ATCC 29473]
gi|238707941|gb|EEQ00299.1| P4-specific DNA primase [Yersinia ruckeri ATCC 29473]
Length = 777
Score = 152 bits (385), Expect = 1e-34, Method: Composition-based stats.
Identities = 58/346 (16%), Positives = 121/346 (34%), Gaps = 48/346 (13%)
Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
+G ++G+ D TGQ K ++ + + + F ++
Sbjct: 414 RHLIGFRNGVFDTTTGQFSAHQKTHWLRTVNSVDYTPPKAGENLSDHAPHFWRWLTRAAG 473
Query: 479 SE-EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
+ E + + M L Q F+ + G GGSGKS + ++ G +A
Sbjct: 474 QQHEKQERILAALYMVLANRYDWQLFLEVTGPGGSGKSVMASIASLLAGKDNTTSATIDT 533
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
+ +R ++G ++I+ + E + A IK +TGGD + Y + Y
Sbjct: 534 LESSRER---------ASVVGFSLIILPD-QERWSGDGAGIKAITGGDAVAIDPKYRDAY 583
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655
S + V N + + RR +++PF + I RD K+ + +
Sbjct: 584 STHIPA-VILAVNNNPMQFSDRSGGVSRRRVILPFPEVIPANERDPQLLAKITGELAVMV 642
Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKE------EERQGTDTYQAWI--------DDCC 701
+ + +I+ + L+A++ E ++G D + +
Sbjct: 643 RHLM----QRFIA----PNDARALLEAQQNSDEALEIKRGADPLVDFCGYLLAVNTPNGL 694
Query: 702 DIGENLWEES---HSLAKSYSEYREQELNYDRKRISTRTVTLNLKQ 744
+G + L +Y + E + ++ +S + Q
Sbjct: 695 YMGNANIIPANPRKYLYHAYLSFMEARGH--QRPMSLTAFGRAVPQ 738
>gi|254304008|ref|ZP_04971366.1| possible ATP-binding protein [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
gi|148324200|gb|EDK89450.1| possible ATP-binding protein [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
Length = 639
Score = 152 bits (385), Expect = 2e-34, Method: Composition-based stats.
Identities = 63/382 (16%), Positives = 129/382 (33%), Gaps = 28/382 (7%)
Query: 393 RQNVEENSKAKSTAQSLEAGSIFSITSD-LLDSSS-RFLGEQDGILDLETGQKVKPTKEL 450
R+ +E+ + +T Q E + D + + ++G L Q +K +E
Sbjct: 274 RKTLEKENIVLNTKQDSEILHLIKTDFRIEEDKNKKYPIAFRNG-WCLYRDQFLK--QEK 330
Query: 451 YITK-STGTPFVEGEPSQEFLDLVSGYFESEE-VMDYFTRCVGMAL-LGGNKAQRFIHIR 507
T + + ++ + + + +E ++ F +G L L F +
Sbjct: 331 IFTPFYMDVDYDPDANDENVINFIKWFCKGDEGLITLFEEILGHILMLERFPHHIFFFVA 390
Query: 508 GVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISET 567
G G +GKST++N++ N + ++ + E L+G + + +
Sbjct: 391 GKGKNGKSTMLNML-----NNWTDGLNSTTALDQFEKE-----TYTYDLIGKIVNLGDDI 440
Query: 568 NENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627
++ + IK + GG + AR Y ++ T N ++ RR
Sbjct: 441 DDTYIEKSRVIKVIAGGSKIKARALYSMPVDFK-STATLIFSCNNMPTFKDKSGGMARRV 499
Query: 628 IVIPFDKPIA--NRDASFAQKLETKYTLE-AKKWFLKGVKAYISKGLDVDIPEVCLKAKE 684
+ P + I D KL T +KG+K I+ G ++ I E E
Sbjct: 500 VCFPCNSNIEYGKIDLDLDDKLCTDSAKSTLLNLGIKGMKRIIANGGELTITETSKAMTE 559
Query: 685 EERQGTDTYQAWIDDCCDI---GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLN 741
D+ + ++ + L Y + ++ T++
Sbjct: 560 RYLIENDSIAMFFNETDVNKLCDDMENNTFTKLYTIYEIFCDENG---YTPSGKNTLSKK 616
Query: 742 LKQKGFIGGIKREKIEKEWKSK 763
L + GF + + K K
Sbjct: 617 LDEFGFESYVGAGNVRKIRPKK 638
>gi|323935654|gb|EGB31971.1| phage/plasmid primase [Escherichia coli E1520]
Length = 591
Score = 152 bits (385), Expect = 2e-34, Method: Composition-based stats.
Identities = 62/362 (17%), Positives = 125/362 (34%), Gaps = 38/362 (10%)
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSG 475
+++ +G +G+ D TG + K ++ ++ PF + F +
Sbjct: 219 NTARNLIGFSNGVFDTRTGNFREHNKNDWLLIASELPFSPPAEGETLATHAPNFWKWLRR 278
Query: 476 -YFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
E++ D + M L Q FI + G GGSGKS + + G ++A
Sbjct: 279 SVAENDRKADRVLAALFMVLANRYDWQLFIEVTGPGGSGKSVMAEICTMLAGKANTVSAS 338
Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
+ R ++G ++I+ + + A IK +TGGD + +
Sbjct: 339 MKALEDARER---------ALVVGFSLIIMPDMTRYAG-DGAGIKAITGGDKVAIDPKHK 388
Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFD--KPIANRDASFAQKLETKYT 652
YS + + N + RR ++ F P RD A+K+E +
Sbjct: 389 APYSTRIPAVVLAVNNNAM-SFSDRSGGISRRRVIFNFSEVVPENERDPMLAEKIEGELA 447
Query: 653 LEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID--------DCCDIG 704
+ + + ++ L + + +A +R+G D+ + D +G
Sbjct: 448 VVIRHLLTRFADQDEARRLLYEQ-QKSEEALAIKREG-DSLVDFCGYLMASVMCDGLLVG 505
Query: 705 ENLWEESHS---LAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWK 761
L +Y Y K ++ ++ G + RE ++++ K
Sbjct: 506 NAEIVPFSPRRYLYHAYLAYMRAHG--FGKPVTLTRFGKDMP--GAMAEYGREYMKRKTK 561
Query: 762 SK 763
Sbjct: 562 HG 563
>gi|29377412|ref|NP_816566.1| DNA primase domain-containing protein [Enterococcus faecalis V583]
gi|29344879|gb|AAO82636.1| DNA primase domain protein [Enterococcus faecalis V583]
Length = 794
Score = 152 bits (385), Expect = 2e-34, Method: Composition-based stats.
Identities = 52/325 (16%), Positives = 109/325 (33%), Gaps = 22/325 (6%)
Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDL-----VSGY-FES 479
+ ++G+ +L+T Q T T T +VE +F D ++
Sbjct: 432 RYLIPVKNGVFNLKTKQLEPFTPNYVFTSKIATAYVENPSLPKFNDWDVESWLNEIACGD 491
Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539
++ + + A+ G ++ I + G G +GK T L+ G Q + + +
Sbjct: 492 AQITTLLWQVISDAINGNYSRKKSIWLMGDGSNGKGTYQQLLYNLIGPQNIATLKINQFS 551
Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK-IKQMTGGDCMTARLNYGNTYS 598
+ L L+ VI + I+ + + + + + YS
Sbjct: 552 E---------RFKLALLVEKVAVIGDDVGAGIYIDDSSEFNSVVTNETILIEVKNRMPYS 602
Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKW 658
+ T N+ +RN + +RR +++PF+ + K E E ++
Sbjct: 603 -ARMYVTVIQSTNEMPKIRNKSNGTYRRLLIVPFNASFEGAKDDWRIKEEYINRKEVLEY 661
Query: 659 FLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSY 718
L + +P+V K EE +Q D + + + + Y
Sbjct: 662 VLHKAVNMDFE--RFIVPDVSKKLLEEYKQENDPLVDFRETVFKPLGINKIPFYMVYSQY 719
Query: 719 SEYREQELNYDRKRISTRTVTLNLK 743
E+ ++ K +S +
Sbjct: 720 KEFCKENN---FKPLSKIKFSKQFT 741
>gi|46201836|ref|ZP_00054256.2| COG3378: Predicted ATPase [Magnetospirillum magnetotacticum MS-1]
Length = 478
Score = 152 bits (385), Expect = 2e-34, Method: Composition-based stats.
Identities = 63/401 (15%), Positives = 132/401 (32%), Gaps = 49/401 (12%)
Query: 398 ENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQ----KVKPTKELYIT 453
+ SK + + E ++ + D + + G + G+ ++
Sbjct: 94 KLSKFRVDSVLHEMAAMMA-EEDFFARAPIGINCASGFIRFM-GEGLPVLEPHHQDHRSR 151
Query: 454 KSTGTPFVEGEPSQ-----EFLDLVSGYFESEE----VMDYFTRCVGMALLG---GNKAQ 501
+ ++ G + L+ G F++++ +D G A LG +
Sbjct: 152 HTLPGQWLPGAEAHPTAGSLLARLLDGVFKADDDAAQKVDLLAEVAGSAALGYATKLRQP 211
Query: 502 RFIHIRGVGG-SGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSR 560
R I ++G +GKS +++LI+ + + A + R ++ L+G
Sbjct: 212 RAIILKGETAENGKSQILDLIRSLLPANAISSVTAGRMGDER---------HIVGLVGKL 262
Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV-RNP 619
+ E + + I + K + G+ + R Y + P + F N
Sbjct: 263 LNAADELSSSTAIASDTFKAIITGEPVQGRDVYKSRIEFRPVAQHLF-ATNTLPVFQGGM 321
Query: 620 DDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPE 677
D RR V+ F++ I R + +++ + W + G I +P+
Sbjct: 322 DRGVQRRLQVVSFNRVIPTEERIEAIGRRIGEEEPDLLLAWAVAGAARLIRN-KGFTLPQ 380
Query: 678 VCLKAKEEERQGTDTYQAWIDDCCDI----GENLWEESHSLAKSYSEYREQELNYDRKRI 733
A + G D AW+ + ++ + + + E+ E
Sbjct: 381 SSRTAMNDWLFGADPVLAWLSEQVEVRPLYNPEARVATRHAFERFREWAIAEG------F 434
Query: 734 STRTVTLNLKQKGFIGGIKREKIE---KEWKSKRIIKGLKL 771
S RT+ GF+ I + R G+ L
Sbjct: 435 SDRTLPSI---NGFVQRITANTTGVEYRRTGQGRFFFGMVL 472
>gi|253999774|ref|YP_003051837.1| ATPase-like protein [Methylovorus sp. SIP3-4]
gi|253986453|gb|ACT51310.1| ATPase-like protein [Methylovorus sp. SIP3-4]
Length = 554
Score = 152 bits (384), Expect = 2e-34, Method: Composition-based stats.
Identities = 72/460 (15%), Positives = 162/460 (35%), Gaps = 47/460 (10%)
Query: 339 NNVYIWSLTLDKITASIMNFLVSMKEDVFDLSE--EPEDNNKNSKSPRFWFNTDYRRQNV 396
++Y+ D T I ++ + SE E ++ + W ++ +
Sbjct: 122 ESIYLDRTLADNKTLYIDDYRRDVGNIYKWTSEYWEVQNPDDVRAEITNWLKNNHNTELS 181
Query: 397 EENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDG--ILDLETG--QKVKPTKELYI 452
N + + + + ++++ ++ + ++D TG + +KP K + +
Sbjct: 182 SRNVNSIFNVFYFKMEAFNKV-----NTNNLYIPTKTHWLVVDQTTGAIEAIKPNKSIPL 236
Query: 453 TKSTGT------PFVEGEPS--QEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFI 504
T P+ E + F ++ + G L KA +F+
Sbjct: 237 TYQINIIIKQAGPYTPKETAVDSLFSKFINSSLPELDKQAVMQEFSGYCLTSCTKAHKFL 296
Query: 505 HIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVII 564
++G GG+GKS + ++ N + + + + L+ ++
Sbjct: 297 FMKGGGGNGKSVHIAIMSTLIPNSVSVRMDTIGLYNDN-------------LVDKNVIFT 343
Query: 565 SETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWW 624
+ET++ N K T GD + R + S + +V N + +
Sbjct: 344 TETHKG-GFNEELFKAATAGDKVEIRGIRKDKQSIKLIA-KWILVGNNDFRIEDFSSGIA 401
Query: 625 RRYIVIPFDKPIAN-RD--ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLK 681
RR I+I +++ N +D + Q++ + W L G++ IS L+ E K
Sbjct: 402 RRMIIINWNESFTNSKDIVRNLEQRIVDEELDIVLDWCLIGLQRLISNKLEFTRCEESEK 461
Query: 682 AKEEERQGTDTYQAWIDDCCDIGE---NLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738
A + D + + +D + +L + +Y L ++++
Sbjct: 462 ALFDFLNHADKVRMFANDYQYEYSPEHKHFITKENLYNKFLDYV---LKNGYEKLNAVNF 518
Query: 739 TLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESV 778
+ +K + K K + + KR++ LKP +
Sbjct: 519 WIRMKNI-YPEIEKDIKSDIKRDGKRVVF---LKPKLQEA 554
>gi|116627642|ref|YP_820261.1| phage DNA polymerase [Streptococcus thermophilus LMD-9]
gi|116100919|gb|ABJ66065.1| Phage DNA polymerase, contains ATPase domain [Streptococcus
thermophilus LMD-9]
gi|312278167|gb|ADQ62824.1| Phage DNA polymerase, contains ATPase domain [Streptococcus
thermophilus ND03]
Length = 501
Score = 152 bits (384), Expect = 2e-34, Method: Composition-based stats.
Identities = 57/350 (16%), Positives = 115/350 (32%), Gaps = 34/350 (9%)
Query: 366 VFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSS 425
++DL E + + + + + N + K + + + S
Sbjct: 90 MYDLDEGIYTASADEFNVLCKTFDNRIKPNDWKQIKMMVRTMTKISRPL---------ES 140
Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE------FLDLVSGY-FE 478
+ + Q+GILDL+ + + + IT T + + + F D ++
Sbjct: 141 ANLVPVQNGILDLKNKKLLPFNPKYVITSKIATAYKPPKSIPKDREGNTFDDWLNSIACG 200
Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538
E++ F + + A+ +F G G +GK T L+ G V + +
Sbjct: 201 DSELVTLFWQIILEAINPNYTRNKFAIFYGDGNNGKGTFQRLLINLIGESNVSALKPAQF 260
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598
E L+G I E + N + + +T GD + +
Sbjct: 261 SDKFNLET---------LVGKVCNIGDEAPNDYLKNPSDLMSITSGDTVLVNPKGRPAFE 311
Query: 599 ESPASFTPF--IVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAK 656
A+F F N N W+RR +++PF+ + K E +
Sbjct: 312 ---ATFKLFNIFSGNYIPNGGNKTKGWYRRIMIVPFNADFNGQIEKPWIKNEFLADKDVL 368
Query: 657 KWFLKGVKAYISKGL-DVDIPEVCLKAKEEERQGTDTYQAWI-DDCCDIG 704
++ L K + P+ EE ++ D ++ ++ G
Sbjct: 369 EYVL--YKTVNQEPFTHFIEPKAVKDLLEEYQEDNDYLLDFLKNEYIPKG 416
>gi|289167298|ref|YP_003445565.1| hypothetical protein smi_0425 [Streptococcus mitis B6]
gi|288906863|emb|CBJ21697.1| conserved hypothetical protein [Streptococcus mitis B6]
Length = 534
Score = 152 bits (384), Expect = 2e-34, Method: Composition-based stats.
Identities = 66/354 (18%), Positives = 134/354 (37%), Gaps = 33/354 (9%)
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ---------EFLDLV 473
D L ++GI D + T E + GT + S LDL+
Sbjct: 171 DPRRFIL-VKNGIYDKKEKLLRPFTHEFVAFSTIGTEYDHFAKSPVIDGWDIDSWLLDLM 229
Query: 474 SGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
SG EE+++ + + +L G ++ I G G GK T+ LI G + V +
Sbjct: 230 SG---DEELVELIWQVISASLNGNYSYRKSIWFVGEGNDGKGTVQQLITNLVGMRNVASL 286
Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAA-KIKQMTGGDCMTARLN 592
+ + + +L + G ++I + ++ + + G+ +
Sbjct: 287 KLNQFSE---------RFALSMIEGKTVIIGDDVQAGIYVDESSNFNSVVTGEPVLVEEK 337
Query: 593 YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYT 652
Y+ T N+ +N + +RR+ ++PF K ++++ ++A K + Y
Sbjct: 338 NKQPYTTV-FKKTVIQSTNELPRFKNKTNGTYRRFAIVPFKKSFSSKEDNWAIKDDYIYR 396
Query: 653 LEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESH 712
E ++ LK P+ ++A E+ ++ DT +A++++ D E+ S
Sbjct: 397 EEVLEYVLKKALEISFD--RFIEPQASIEALEDFKESNDTVKAFVNEWFDKFESTRLPSR 454
Query: 713 SLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRII 766
L Y E+ E +++ R L + + +K S + I
Sbjct: 455 FLWWLYQEWCRDEG---VTKLTKRKFETQLAKN----IPENWVKKKMRPSGKFI 501
>gi|170680147|ref|YP_001743025.1| D5 family nucleoside triphosphatase [Escherichia coli SMS-3-5]
gi|170517865|gb|ACB16043.1| nucleoside triphosphatase, D5 family [Escherichia coli SMS-3-5]
Length = 605
Score = 152 bits (384), Expect = 2e-34, Method: Composition-based stats.
Identities = 64/376 (17%), Positives = 128/376 (34%), Gaps = 39/376 (10%)
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSG 475
+++ +G +G+ D TG + K ++ ++ PF + F +
Sbjct: 233 NTARNLIGFSNGVFDTRTGNFREHNKNDWLLIASELPFSPPAEGETLATHAPNFWKWLRR 292
Query: 476 -YFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
E++ D + M L Q FI + G GGSGKS + + G ++A
Sbjct: 293 SVAENDRKADRVLAALFMVLANRYDWQLFIEVTGPGGSGKSVMAEICTMLAGKANTVSAS 352
Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
+ R ++G ++I+ + + A IK +TGGD + +
Sbjct: 353 MKALEDARER---------ALVVGFSLIIMPDMTRYAG-DGAGIKAITGGDKVAIDPKHK 402
Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFD--KPIANRDASFAQKLETKYT 652
YS + + N + RR ++ F P RD A+K+E +
Sbjct: 403 APYSTRIPAVVLAVNNNAM-SFSDRSGGISRRRVIFNFSEVVPENERDPMLAEKIEGELA 461
Query: 653 LEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID--------DCCDIG 704
+ + + ++ L + + +A +R+G D+ + D +G
Sbjct: 462 VVIRHLLTRFADQDEARRLLYEQ-QKSEEALAIKREG-DSLVDFCGYLMASVMCDGLLVG 519
Query: 705 ENLWEESHS---LAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWK 761
L +Y Y K ++ ++ G + RE ++++ K
Sbjct: 520 NAEIVPFSPRRYLYHAYLAYMRAHG--FGKPVTLTRFGKDMP--GAMAEYGREYMKRKTK 575
Query: 762 SKRIIKGLKLKPAFES 777
+ L E
Sbjct: 576 HG-FRSNVTLTEESED 590
>gi|228961912|ref|ZP_04123454.1| hypothetical protein bthur0005_53160 [Bacillus thuringiensis
serovar pakistani str. T13001]
gi|228797771|gb|EEM44842.1| hypothetical protein bthur0005_53160 [Bacillus thuringiensis
serovar pakistani str. T13001]
Length = 168
Score = 152 bits (384), Expect = 2e-34, Method: Composition-based stats.
Identities = 41/179 (22%), Positives = 70/179 (39%), Gaps = 22/179 (12%)
Query: 619 PDDAWWRRYIVIPFDK--PIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIP 676
D+ WRR +IPF+ P RD ++KL + W ++G + +GL P
Sbjct: 1 MDEGIWRRVKLIPFNLNLPAHKRDKRLSEKLSLE-MSGILNWAIEGCMKWQKEGLK--EP 57
Query: 677 EVCLKAKEEERQGTDTYQAWIDDCCDIG----ENLWEESHSLAKSYSEYREQELNYDRKR 732
+V +A ++ D ++ + C I E + E+ L Y + +
Sbjct: 58 KVVAEATGRYKEDMDILGPFLSEVCYIDEPKNEAIKMEAKELYNVYETWC---FRSGERA 114
Query: 733 ISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL---KPAFESVDDNSNIIDFK 788
+ R+ L+ KGF K +K G+ L KP + V +N+ FK
Sbjct: 115 LGNRSFYRMLETKGF-------GKTKGTGNKTFFTGITLLERKPVTKGVTENAENNHFK 166
>gi|55822742|ref|YP_141183.1| DNA primase, phage associated [Streptococcus thermophilus CNRZ1066]
gi|55738727|gb|AAV62368.1| DNA primase, phage associated [Streptococcus thermophilus CNRZ1066]
Length = 500
Score = 152 bits (384), Expect = 2e-34, Method: Composition-based stats.
Identities = 57/342 (16%), Positives = 112/342 (32%), Gaps = 33/342 (9%)
Query: 366 VFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSS 425
++DL E + + + + + N + K + + + S
Sbjct: 90 MYDLDEGIYTASADEFNVLCKTFDNRIKPNDWKQIKMMVRTMTKISRPL---------ES 140
Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE------FLDLVSGY-FE 478
+ + Q+GILDL+ + + + IT T + + + F D ++
Sbjct: 141 ANLVPVQNGILDLKNKELLPFNPKYVITSKIATAYKPPKSIPKDREGNTFDDWLNSIACG 200
Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538
E++ F + + A+ +F G G +GK T L+ G V + +
Sbjct: 201 DSELVTLFWQIILEAINPNYTRNKFAIFYGDGNNGKGTFQRLLINLIGESNVSALKPAQF 260
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598
E L+G I E + N + + +T GD + +
Sbjct: 261 SDKFNLET---------LVGKVCNIGDEAPNDYLKNPSDLMSITSGDTVLVNPKGRPAFE 311
Query: 599 ESPASFTPF--IVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAK 656
A+F F N N W+RR +++PF+ + K E +
Sbjct: 312 ---ATFKLFNIFSGNYIPNGGNKTKGWYRRIMIVPFNADFNGQTEKPWIKNEFLADKDVL 368
Query: 657 KWFLKGVKAYISKGL-DVDIPEVCLKAKEEERQGTDTYQAWI 697
++ L K + P+ EE ++ D +I
Sbjct: 369 EYVL--YKTVNQEPFTHFIEPKAVKDLLEEYQEDNDYLLDFI 408
>gi|156932824|ref|YP_001436740.1| hypothetical protein ESA_00620 [Cronobacter sakazakii ATCC BAA-894]
gi|156531078|gb|ABU75904.1| hypothetical protein ESA_00620 [Cronobacter sakazakii ATCC BAA-894]
Length = 771
Score = 152 bits (384), Expect = 2e-34, Method: Composition-based stats.
Identities = 54/368 (14%), Positives = 120/368 (32%), Gaps = 56/368 (15%)
Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
R +G ++G+ D TG +E ++ + P + F ++
Sbjct: 409 RRLIGFRNGVFDTVTGTFGPHRRENWLRTVNSVDYTAPRPEENLKEHAPSFWQWLTRAAG 468
Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
S + + + M L Q F+ + G GGSGKS + ++ G +A
Sbjct: 469 RSHDKQERILAALFMVLANRYDWQMFLEVTGPGGSGKSVMASIATLLAGKDNTTSATIDT 528
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
+ +R ++G ++I+ + E + A IK +TGGD + Y + Y
Sbjct: 529 LESSRER---------ASVVGYSLIILPD-QEKWSGDGAGIKAITGGDAVAIDPKYRDAY 578
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655
S + V N + + RR +++ F + I RD K+ + +
Sbjct: 579 STHIPA-VILAVNNNPMRFSDRSGGVSRRRVILTFPEVIPAKERDPKLLDKISAELAVIV 637
Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGEN 706
+ + +P+ + + + ++ +D + +
Sbjct: 638 RHLMQR-----------FALPDEARELLQAQQSSGEALDIKRQSDPLVDFCGYLMPLSTP 686
Query: 707 L-----------WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755
L +Y + E + + +S + Q + +R
Sbjct: 687 NGLFMGNANIRPINPKRYLYHAYLSFMESRGH--QHPLSLTAFGQAVPQT--LKEYERVL 742
Query: 756 IEKEWKSK 763
+++ +
Sbjct: 743 LKRRTSNG 750
>gi|238787759|ref|ZP_04631556.1| P4-specific DNA primase [Yersinia frederiksenii ATCC 33641]
gi|238724102|gb|EEQ15745.1| P4-specific DNA primase [Yersinia frederiksenii ATCC 33641]
Length = 777
Score = 152 bits (384), Expect = 2e-34, Method: Composition-based stats.
Identities = 56/349 (16%), Positives = 114/349 (32%), Gaps = 54/349 (15%)
Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
+G ++G+ D TGQ K ++ + + + F ++
Sbjct: 414 RHLIGFRNGVFDTTTGQFSAHQKTHWLRTVNSVDYTPPKAGENLSDHAPHFWRWLTRAAG 473
Query: 479 SE-EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
+ E + + M L Q F+ + G GGSGKS + ++ G +A
Sbjct: 474 QQHEKQERILAALYMVLANRYDWQLFLEVTGPGGSGKSVMASIASLLAGKDNTTSATIDT 533
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
+ +R ++G ++I+ + E + A IK +TGGD + Y + Y
Sbjct: 534 LESSRER---------ASVVGFSLIILPD-QERWSGDGAGIKAITGGDAVAIDPKYRDAY 583
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655
S + V N + + RR +++PF + I RD K+ + +
Sbjct: 584 STHIPA-VILAVNNNPMQFSDRSGGVSRRRVILPFPEVIPANERDPLLLAKITGELAVIV 642
Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWI--------D 698
+ + P E + ++G D +
Sbjct: 643 RHLMQR-----------FTAPNDARALLEAQQNSDEALEIKRGADPLVDFCGYLLAVNTP 691
Query: 699 DCCDIGENLWEES---HSLAKSYSEYREQELNYDRKRISTRTVTLNLKQ 744
+ +G + L +Y + E + ++ +S + Q
Sbjct: 692 NGLYMGNANIIPANPRKYLYHAYLSFMEARGH--QRPMSLTAFGRAVPQ 738
>gi|213423871|ref|ZP_03356851.1| hypothetical protein Salmonentericaenterica_41108 [Salmonella
enterica subsp. enterica serovar Typhi str. E01-6750]
Length = 401
Score = 152 bits (384), Expect = 2e-34, Method: Composition-based stats.
Identities = 47/244 (19%), Positives = 84/244 (34%), Gaps = 21/244 (8%)
Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
R +G ++G+LD + G + ++ F + F +
Sbjct: 137 RRLIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVEGETLETHAPAFWRWLDRAAG 196
Query: 479 S-EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
E D + M L Q F+ + G GGSGKS + + G +A
Sbjct: 197 GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIET 256
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
+ R L G ++ + + E + A +K +TGGD ++ Y + Y
Sbjct: 257 LESPRER---------AALTGFSLIRLPD-QEKWSGDGAGLKAITGGDAVSVDPKYRDAY 306
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655
S + V N + + RR ++I F + IA RD K+ + +
Sbjct: 307 STHIPA-VILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITRELAVIV 365
Query: 656 KKWF 659
+
Sbjct: 366 RHLM 369
>gi|331673076|ref|ZP_08373850.1| bacteriophage P4 DNA primase [Escherichia coli TA280]
gi|331069763|gb|EGI41144.1| bacteriophage P4 DNA primase [Escherichia coli TA280]
Length = 610
Score = 152 bits (384), Expect = 2e-34, Method: Composition-based stats.
Identities = 62/362 (17%), Positives = 125/362 (34%), Gaps = 38/362 (10%)
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSG 475
+++ +G +G+ D TG + K ++ ++ PF + F +
Sbjct: 238 NTARNLIGFSNGVFDTRTGNFREHNKNDWLLIASELPFSPPAEGETLATHAPNFWKWLRR 297
Query: 476 -YFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
E++ D + M L Q FI + G GGSGKS + + G ++A
Sbjct: 298 SVAENDRKADRVLAALFMVLANRYDWQLFIEVTGPGGSGKSVMAEICTMLAGKANTVSAS 357
Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
+ R ++G ++I+ + + A IK +TGGD + +
Sbjct: 358 MKALEDARER---------ALVVGFSLIIMPDMTRYAG-DGAGIKAITGGDKVAIDPKHK 407
Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFD--KPIANRDASFAQKLETKYT 652
YS + + N + RR ++ F P RD A+K+E +
Sbjct: 408 APYSTRIPAVVLAVNNNAM-SFSDRSGGISRRRVIFNFSEVVPENERDPMLAEKIEGELA 466
Query: 653 LEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID--------DCCDIG 704
+ + + ++ L + + +A +R+G D+ + D +G
Sbjct: 467 VVIRHLLTRFADQDEARRLLYEQ-QKSEEALAIKREG-DSLVDFCGYLMASVMCDGLLVG 524
Query: 705 ENLWEESHS---LAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWK 761
L +Y Y K ++ ++ G + RE ++++ K
Sbjct: 525 NAEIVPFSPRRYLYHAYLAYMRAHG--FGKPVTLTRFGKDMP--GAMAEYGREYMKRKTK 580
Query: 762 SK 763
Sbjct: 581 HG 582
>gi|310826736|ref|YP_003959093.1| phage/plasmid primase [Eubacterium limosum KIST612]
gi|308738470|gb|ADO36130.1| phage/plasmid primase [Eubacterium limosum KIST612]
Length = 431
Score = 152 bits (383), Expect = 2e-34, Method: Composition-based stats.
Identities = 64/400 (16%), Positives = 130/400 (32%), Gaps = 31/400 (7%)
Query: 381 KSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLET 440
T Y + + K T + + + +D L + +G L
Sbjct: 43 PDENKLKRTIYEEISPWLHDKVAQTVEQVIKALKLAAYADPLPLQCDRIHVANGTYFL-D 101
Query: 441 GQKVKPTKELYITKSTGTPFVEGEPSQE-FLDLVSGYFESEEVMDYFTRCVGMALLGGNK 499
G + ++ Y + + P+ E +L +S E E + +G L+ K
Sbjct: 102 GTFTE--EKEYCSNRLSVSYRADAPAPEHWLRFISELLE-PEDIPALQEYLGYCLIPSTK 158
Query: 500 AQRFIHIRGVGGSGKS---TLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRL 556
Q+ + + G GG GKS +MN I + +N + I + + + L
Sbjct: 159 GQKMLMLIGKGGEGKSRIGVVMNTI-------FGLNMNTTSI-----QKVENSRFARADL 206
Query: 557 MGSRIVIISETNENDEINAAKIKQMTGGD-CMTARLNYGNTYSESPASFTPFIVPNKHLF 615
G +++ + + N IK + + M +Y
Sbjct: 207 EGKLLMVDDDLDMNALTKTNYIKSIVTAELRMDLERKREQSYQGLLYVRFLCFGNGALTA 266
Query: 616 VRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDV 673
+ + D ++RR I++ A+R D A+KL + W L+G++ I+
Sbjct: 267 LHDRSDGFFRRQIILTTKDKPADRFDDPFLAEKLIAE-KEGIFLWMLEGLRRLIANHYHF 325
Query: 674 DIPEVCLKAKEEERQGTDTYQAWIDDCCDIG--ENLWEESHSLAKSYSEYREQELNYDRK 731
I + + + ++D +G + + +L +Y + E
Sbjct: 326 TISQRAKDNITSAVREANNILDFLDSEGYVGFKADYEASTKNLYAAYKRWCEDNAEN--- 382
Query: 732 RISTRTVTLNLKQKG--FIGGIKREKIEKEWKSKRIIKGL 769
+S ++ L Q + K R G+
Sbjct: 383 PLSPKSFANQLSQNAERYHLEPVNNLHIGGGKRCRGYMGI 422
>gi|325959878|ref|YP_004291344.1| phage/plasmid primase, P4 family [Methanobacterium sp. AL-21]
gi|325331310|gb|ADZ10372.1| phage/plasmid primase, P4 family [Methanobacterium sp. AL-21]
Length = 584
Score = 152 bits (383), Expect = 3e-34, Method: Composition-based stats.
Identities = 65/349 (18%), Positives = 127/349 (36%), Gaps = 42/349 (12%)
Query: 366 VFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSS 425
++D SE K RF + V+E K + + +++ +
Sbjct: 200 IYDESEGIYKAYDEKKFSRFLKKVVGKEFFVDEVKK------------LMGLFNEIKEED 247
Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDY 485
+ + ++++ET + K ++ + S F + + F+
Sbjct: 248 PNHVAFNNCLMNIETLETRKFDPNIFTRFKVPYNWNPSADSPFFKEKICEIFDDPGKFQT 307
Query: 486 FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545
F + VG GN + + G G +GKS LM +I F IN+ A+ +Q+ +
Sbjct: 308 FLQIVGYLFAKGNPHNKLFLLMGKGANGKSLLMQIISAIF-----INSSAAVPLQDFQKD 362
Query: 546 AGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFT 605
G L L+G R+ ++S+ +IK +TGGD +T + + + +
Sbjct: 363 FG-----LQPLIGKRVNLLSDLPIATIEETGQIKAITGGDDITINRKFKDPLT-TKLKCK 416
Query: 606 PFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEAKKW----F 659
N+ + + A WRR ++I +K +RD +KL E +W
Sbjct: 417 IVGAGNRLPKIMDDSYALWRRIVIIKLEKTFDGDSRDTKLTEKLLND--TEGMEWFIFNA 474
Query: 660 LKGVKA-----YISKGLDVDIPEVCLK------AKEEERQGTDTYQAWI 697
++ K + E A E+ + TD+ ++
Sbjct: 475 IQAYKKIRETGWTEDTYREIREEAIKNSDPALYASEQLFEVTDSPDNFL 523
>gi|325696225|gb|EGD38116.1| P4 family prophage Sa05 [Streptococcus sanguinis SK160]
Length = 479
Score = 152 bits (383), Expect = 3e-34, Method: Composition-based stats.
Identities = 54/315 (17%), Positives = 103/315 (32%), Gaps = 31/315 (9%)
Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE------FLDLVSGY-FES 479
+ Q+GI++LET + + + + IT T + F D ++
Sbjct: 121 NLIPVQNGIINLETKELLPFSPKYVITSKISTAYHAPTQVPRDREGKTFDDWLNSIACND 180
Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539
E++ F + + A+ + +F G G +GK T + G + + +
Sbjct: 181 SELVTLFWQIILEAINPNHTRNKFAIFYGDGNNGKGTFQRFLINLIGESNISALKPAQFA 240
Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599
+ E L+G I E N + + +T GD + +
Sbjct: 241 EKHNLET---------LVGKVCNIGDEAPNEYLKNPSDLMSITSGDTVLVNPKGRPAFE- 290
Query: 600 SPASFTPF--IVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEA 655
A+F F N N W+RR +++PF+ + +
Sbjct: 291 --ATFKLFNIFSGNYIPNGGNKTKGWYRRIMIVPFNADFNGEKEKPWIKNEFLAN--KDV 346
Query: 656 KKWFLKGVKAYISKGL-DVDIPEVCLKAKEEERQGTDTYQAWI-DDCCDIG--ENLWEES 711
++ L KA + P+ EE ++ D +W+ + + G E
Sbjct: 347 LEYAL--YKAINQEPFTHFIEPKAVKGLLEEYQEDNDYLLSWVKHEYMEKGWHELDVVPV 404
Query: 712 HSLAKSYSEYREQEL 726
L +S Y E
Sbjct: 405 FILTRSLKHYAEDMG 419
>gi|238784156|ref|ZP_04628169.1| P4-specific DNA primase [Yersinia bercovieri ATCC 43970]
gi|238714865|gb|EEQ06864.1| P4-specific DNA primase [Yersinia bercovieri ATCC 43970]
Length = 777
Score = 152 bits (383), Expect = 3e-34, Method: Composition-based stats.
Identities = 58/346 (16%), Positives = 120/346 (34%), Gaps = 48/346 (13%)
Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
+G ++G+ D TGQ K ++ + + + F ++
Sbjct: 414 RHLIGFRNGVFDTTTGQFSAHQKTHWLRTVNSVDYTPPKAGENLSDHAPHFWRWLTRAAG 473
Query: 479 SE-EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
+ E + + M L Q F+ + G GGSGKS + ++ G +A
Sbjct: 474 QQHEKQERILAALYMVLANRYDWQLFLEVTGPGGSGKSVMASIASLLAGKDNTTSATIDT 533
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
+ +R ++G ++I+ + E + A IK +TGGD + Y + Y
Sbjct: 534 LESSRER---------ASVVGFSLIILPD-QERWSGDGAGIKAITGGDAVAIDPKYRDAY 583
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655
S + V N + + RR +++PF + I RD K+ + +
Sbjct: 584 STHIPA-VILAVNNNPMQFSDRSGGVSRRRVILPFPEVIPANERDPQLLAKITGELAVMV 642
Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKE------EERQGTDTYQAWI--------DDCC 701
+ + + + V L+A++ E ++G D + +
Sbjct: 643 --------RHLMQRFTAPNDARVLLEAQQNSDEALEIKRGADPLVDFCGYLLAVNTPNGL 694
Query: 702 DIGENLWEES---HSLAKSYSEYREQELNYDRKRISTRTVTLNLKQ 744
+G + L +Y + E + ++ +S + Q
Sbjct: 695 YMGNANIIPANPRKYLYHAYLSFMEARGH--QRPMSLTAFGRAVPQ 738
>gi|323977714|gb|EGB72800.1| phage/plasmid primase [Escherichia coli TW10509]
Length = 605
Score = 151 bits (382), Expect = 3e-34, Method: Composition-based stats.
Identities = 62/362 (17%), Positives = 126/362 (34%), Gaps = 38/362 (10%)
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSG 475
+++ +G +G+ D TG + K ++ ++ PF + F +
Sbjct: 233 NTARNLIGFSNGVFDTRTGNFREHNKNDWLLIASELPFSPPAEGETLATHAPNFWKWLHR 292
Query: 476 -YFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
E++ D + M L Q FI + G GGSGKS + + G ++A
Sbjct: 293 SVAENDRKADRVLAALFMVLANRYDWQLFIEVTGPGGSGKSVMAEICTMLAGKANTVSAS 352
Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
+ R ++G ++I+ + + A IK +TGGD + +
Sbjct: 353 MKALEDARER---------ALVVGFSLIIMPDMTRYAG-DGAGIKAITGGDKVAIDPKHK 402
Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFD--KPIANRDASFAQKLETKYT 652
YS + + N + RR ++ F P RD+ A+K+E +
Sbjct: 403 APYSTRIPAVVLAVNNNAM-SFSDRSGGISRRRVIFNFSEVVPENERDSMLAEKIEGELA 461
Query: 653 LEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID--------DCCDIG 704
+ + + ++ L + + +A +R+G D+ + D +G
Sbjct: 462 VVIRHLLTRFANQDEARRLLYEQ-QKSEEALAIKREG-DSLVDFCGYLMASVMCDGLLVG 519
Query: 705 ENLWEESHS---LAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWK 761
L +Y Y K ++ ++ G + RE ++++ K
Sbjct: 520 NAEIVPFSPRRYLYHAYLAYMRAHG--FGKPVTLTRFGKDMP--GAMAEYGREYMKRKTK 575
Query: 762 SK 763
Sbjct: 576 HG 577
>gi|227113527|ref|ZP_03827183.1| hypothetical protein PcarbP_11212 [Pectobacterium carotovorum
subsp. brasiliensis PBR1692]
Length = 775
Score = 151 bits (382), Expect = 3e-34, Method: Composition-based stats.
Identities = 63/378 (16%), Positives = 129/378 (34%), Gaps = 51/378 (13%)
Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
R +G ++G+ D +G+ +E ++ + + + F ++
Sbjct: 411 RRLIGFRNGVFDTASGEFKPHRREHWLNTVNDVDYTPFKAGENLADNAPHFWRWLTRAAG 470
Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
+ + + + M L Q F+ + G GGSGKS L + G A +
Sbjct: 471 SNTDKQERILAALFMVLANCYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNTTAATINT 530
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
I +R + ++G ++++ + E + A IK +TGGD + Y + Y
Sbjct: 531 IESSRERSS---------IIGFSLIVLPD-QEKWSGDGAGIKAITGGDAVMVDPKYRDAY 580
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655
S + V N + + RR ++I F + I RD +K+ + +
Sbjct: 581 STRIPA-VILAVNNSPMRFSDRSGGVSRRRVIIHFGETIPASERDPKLKEKIRAELAVIV 639
Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKE------EERQGTDTYQAWIDDCCDIGENL-- 707
+ + + D + L+A++ E ++ D + G+
Sbjct: 640 --------RHLMKRFADPNDARTLLQAQQHSAEALEIKRQADPLVDFCGYLLAHGDTTGL 691
Query: 708 ---------WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEK 758
L +Y + E + +K IS L + + K
Sbjct: 692 YMGNANITPRNPRKYLYHAYLSFMESHGH--QKPISLTAFGKVLPN---MMSEYGQTYLK 746
Query: 759 EWKSKRIIKGLKLKPAFE 776
++ I L+LK +
Sbjct: 747 GRTNQGIQTNLELKDESD 764
>gi|148993596|ref|ZP_01823067.1| putative phage replication protein [Streptococcus pneumoniae
SP9-BS68]
gi|168489324|ref|ZP_02713523.1| prophage Sa05, DNA primase, P4 family [Streptococcus pneumoniae
SP195]
gi|147927817|gb|EDK78839.1| putative phage replication protein [Streptococcus pneumoniae
SP9-BS68]
gi|183572209|gb|EDT92737.1| prophage Sa05, DNA primase, P4 family [Streptococcus pneumoniae
SP195]
gi|332071695|gb|EGI82188.1| phage/plasmid primase, P4 family, C-terminal domain protein
[Streptococcus pneumoniae GA17570]
Length = 489
Score = 151 bits (382), Expect = 3e-34, Method: Composition-based stats.
Identities = 53/315 (16%), Positives = 103/315 (32%), Gaps = 31/315 (9%)
Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE------FLDLVSGY-FES 479
+ ++GI+DL T + + + + IT T + + F D ++
Sbjct: 130 NLVPVKNGIIDLRTKELLPFSPKYVITSKISTAYHAPKRVPTDREGKTFDDWLNSIACND 189
Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539
E++ F + + A+ + +F G G +GK T + G + + +
Sbjct: 190 SELVTLFWQIILEAINPNHTRNKFAIFYGDGNNGKGTFQRFLINLIGESNISALKPAQFG 249
Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599
+ E L+G I E N + + +T GD + +
Sbjct: 250 EKHNLET---------LVGKVCNIGDEAPNEYLKNPSDLMSITSGDTVLVNPKGRPAFE- 299
Query: 600 SPASFTPF--IVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEA 655
A+F F N N W+RR +++PF+ + E
Sbjct: 300 --ATFKLFNIFSGNYIPNGGNKTKGWYRRIMIVPFNADFNGEKEKPWIKNEFLAN--KEV 355
Query: 656 KKWFLKGVKAYISKGL-DVDIPEVCLKAKEEERQGTDTYQAWI-DDCCDIG--ENLWEES 711
++ L KA + P+ EE ++ D +W+ + + G E
Sbjct: 356 LEYAL--YKAINQEPFTHFIEPKAVKGLLEEYQEDNDYLLSWVKHEYMEKGWHELDVVPV 413
Query: 712 HSLAKSYSEYREQEL 726
+ +S Y E
Sbjct: 414 FIVTRSLKHYAEDMG 428
>gi|298674303|ref|YP_003726053.1| phage/plasmid primase [Methanohalobium evestigatum Z-7303]
gi|298287291|gb|ADI73257.1| phage/plasmid primase, P4 family [Methanohalobium evestigatum
Z-7303]
Length = 479
Score = 151 bits (382), Expect = 4e-34, Method: Composition-based stats.
Identities = 55/371 (14%), Positives = 123/371 (33%), Gaps = 26/371 (7%)
Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ-EFLDLVSG 475
I +++ +L +G+L+L+TG+ + E+Y TK + + EF + +
Sbjct: 114 IDKSQINTDKFYLPVNNGLLELKTGKLKNFSPEIYFTKKIPIDYKKDTNVPCEFFNFLKD 173
Query: 476 YFESEEVMDY-FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
FE +E Y +G L G +F+ +RG+ +G + ++ L+K G+
Sbjct: 174 IFEGDEWQIYVLQEYLGYTLYCGYPFDKFLFLRGLPENGINVILELMKSLVGDVNYHTLT 233
Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
SD+++ + + I E +N N ++ ++ G + + Y
Sbjct: 234 FSDLLKEKSAVQ-------LEYYDKLFNICGEMGKNVSPNPEQLGKLVGDNAIKVDEKYE 286
Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIV---IPFDKPIANRDASFAQKLET-- 649
++ + +K V ++ I+ P +K I N + +++
Sbjct: 287 YGFTFKNRT-KLLFTGDKLPDVNRLSADLIKKLIILDVFPKEKRIQNDEIPNVHQIQIMC 345
Query: 650 ---KYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQ-GTDTYQAWIDDCCDIGE 705
+ W L+G++ + E E + ++
Sbjct: 346 ENPTFLKGILSWALEGLQRLLYNN-GFSYSEKIDNKINEMLTLKENHIDLYVGQRIAHNT 404
Query: 706 NLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRI 765
+ S + Y + + G K K +K + + +
Sbjct: 405 GSFCPSDMVYSDYISFASE---LGITPYGKSKFYSEFIDACIKFGYKLYKTQKTYNNGKR 461
Query: 766 ---IKGLKLKP 773
+ LK
Sbjct: 462 HQSFVNISLKN 472
>gi|238797084|ref|ZP_04640587.1| P4-specific DNA primase [Yersinia mollaretii ATCC 43969]
gi|238719129|gb|EEQ10942.1| P4-specific DNA primase [Yersinia mollaretii ATCC 43969]
Length = 777
Score = 151 bits (382), Expect = 4e-34, Method: Composition-based stats.
Identities = 56/349 (16%), Positives = 113/349 (32%), Gaps = 54/349 (15%)
Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
+G ++G+ D TGQ K ++ + + + F ++
Sbjct: 414 RHLIGFRNGVFDTTTGQFSAHQKTHWLRTVNSVDYTPPKAGENLSDHAPHFWRWLTRAAG 473
Query: 479 SE-EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
+ E + + M L Q F+ + G GGSGKS + ++ G +A
Sbjct: 474 QQHEKQERILAALYMVLANRYDWQLFLEVTGPGGSGKSVMASIASLLAGKDNTTSATIDT 533
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
+ +R ++G ++I+ + E + A IK +TGGD + Y + Y
Sbjct: 534 LESSRER---------ASVVGFSLIILPD-QERWSGDGAGIKAITGGDAVAIDPKYRDAY 583
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655
S + V N + + RR +++PF + I RD K+ + +
Sbjct: 584 STHIPA-VILAVNNNPMQFSDRSGGVSRRRVILPFPEVIPANERDPLLLAKITGELAVIV 642
Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWI--------D 698
+ P E + ++G D +
Sbjct: 643 RHLM-----------QCFTAPNDARALLEAQQNSDEALEIKRGADPLVDFCGYLLAVNTP 691
Query: 699 DCCDIGENLWEES---HSLAKSYSEYREQELNYDRKRISTRTVTLNLKQ 744
+ +G + L +Y + E + ++ +S + Q
Sbjct: 692 NGLYMGNANIIPANPRKYLYHAYLSFMEARGH--QRPMSLTAFGRAVPQ 738
>gi|168229313|ref|YP_001686834.1| orf40 [Streptococcus phage 858]
gi|155241708|gb|ABT18028.1| orf40 [Streptococcus phage 858]
Length = 514
Score = 151 bits (382), Expect = 4e-34, Method: Composition-based stats.
Identities = 62/337 (18%), Positives = 132/337 (39%), Gaps = 28/337 (8%)
Query: 418 TSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ---------E 468
+ +RF+ ++GI D + T E + T + S
Sbjct: 149 AVGEFEEHNRFILVKNGIYDKKERILKPFTHEFVAFSTIATSYNPLAESPTINGWDVDSW 208
Query: 469 FLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528
LDL++G ++++ + + +L G ++ I G G GK T+ LI G +
Sbjct: 209 LLDLMNG---DKDLVKLIWQVISASLNGNYSYRKSIWFVGEGNDGKGTVQQLITNLVGIK 265
Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAA-KIKQMTGGDCM 587
V + + + SL + G ++I + ++ + + G+ +
Sbjct: 266 NVATLKLNQFSE---------RFSLSIIEGKTVIIGDDVQAGIYVDESSNFNSVVTGEPV 316
Query: 588 TARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKL 647
Y+ T N+ +N + +RR+++IPF K ++++ ++A K
Sbjct: 317 LVEEKNKQPYTTV-FKKTVIQSTNELPRFKNKTNGTYRRFVIIPFKKSFSSKEDNWAIKE 375
Query: 648 ETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENL 707
+ E ++ LK KA D P+ ++A E+ ++ DT ++++ + D E+
Sbjct: 376 DYINRKEVLEYVLK--KALEMSFTRFDEPKASIEALEDFKESNDTVKSFVVEWFDKFEST 433
Query: 708 WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQ 744
S L Y E+ ++E +++ R L +
Sbjct: 434 RLPSRFLWWLYQEWCKEEG---VTKLTKRKFENQLAK 467
>gi|51597435|ref|YP_071626.1| phage primase [Yersinia pseudotuberculosis IP 32953]
gi|51590717|emb|CAH22360.1| putative phage primase [Yersinia pseudotuberculosis IP 32953]
Length = 763
Score = 151 bits (381), Expect = 4e-34, Method: Composition-based stats.
Identities = 58/359 (16%), Positives = 124/359 (34%), Gaps = 38/359 (10%)
Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
+G Q+G+ DL+ Q ++ F E +P + F ++
Sbjct: 392 RHLIGFQNGVYDLKAKQFRPHRANDWLQHHNDIIFTEPQPDENLAHHAPHFTKWLAHAAN 451
Query: 479 SE-EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
E M + M L Q F+ + G GGSGKS + G Q + +
Sbjct: 452 DELPKMARIKAALFMILSNRFDWQLFLEVTGEGGSGKSVFTYIATLLAGRQNTASGNMAA 511
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
+ Q R + +G ++ + + + A IK +TGGD + Y +
Sbjct: 512 LDQARGR---------AQFVGKSLITLPDQVKYVG-EGAGIKAITGGDLVEIDGKYEKQF 561
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEA 655
S + + N+ + RR ++ F+ P+ A++D +K+ + +
Sbjct: 562 S-TLLTAVVLATNNEPMSFTERQGGIARRRVIFAFNHPVKEADKDPLIGEKIAAELPVVI 620
Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENL-------- 707
+ ++ K + + + + ++ D + ++GE +
Sbjct: 621 RCLLVEFAD--QDKARKLLLEQRDSREAMGVKRDADPLYGFCAHIVELGEAVGMYMGTLA 678
Query: 708 ---WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQ--KGFIGGIKREKIEKEWK 761
L +Y Y E + ++ +S + + K F K+ + +K ++
Sbjct: 679 ISPRAPRIYLYHAYLAYMEAYGH--QRSLSLTKFGKDFPKVMKEFGAEYKKARTDKGFR 735
>gi|157325399|ref|YP_001468818.1| gp34 [Listeria phage P35]
gi|66733404|gb|AAY53219.1| gp34 [Listeria phage P35]
Length = 634
Score = 151 bits (381), Expect = 4e-34, Method: Composition-based stats.
Identities = 56/356 (15%), Positives = 119/356 (33%), Gaps = 30/356 (8%)
Query: 431 EQDGILDLETGQ-------KVKPTKELYITKSTGTPF-VEGEPSQEFLDLVSGYFE-SEE 481
+G++D + + + + P+ E E QE D ++ E+
Sbjct: 286 VANGVIDTRKAEAYGMDSSFIPIDDKKFSPYYINIPYNAEAEAVQEVDDYLNNLTGGDED 345
Query: 482 VMDYFTRCVGMALLGGNKAQRF----IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
+G LL + +R RG GG+GK TL+ +I G + V +
Sbjct: 346 YKKVLLEALGSTLLTDPEQKRLLAKIFIFRGNGGNGKGTLLTIISEILGRESVGTSSLEQ 405
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEIN--AAKIKQMTGGDCMTARLNYGN 595
+ L L G + + + N IK ++ D + R
Sbjct: 406 LT---------NESYLYSLNGKLANLCDDVENSAIDNKKMKIIKNISTCDRIDLRKMREQ 456
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLET-KYTLE 654
+S + + T + N L +W RR + +P + +D F KL T K
Sbjct: 457 AFS-ATLTCTLIMTSNHTLKSFEKGKSWKRRVMWMPMFSEVVKKDPRFITKLTTPKALQY 515
Query: 655 AKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
++G+ + + + +V + + + + E + +
Sbjct: 516 WLALMVEGLNRLLDQKCTLTPSKVLEDYNKAYHADNNNALDFFATITE-NEIFDQPVKDV 574
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLK 770
+ Y + + E D+ + T + ++ + ++++ + K+ LK
Sbjct: 575 YEKYCAWFKDEHESDQDPFKSTTFSRSVME---FYPVEKKNVRIGQKTPYCYVALK 627
>gi|168061752|ref|XP_001782850.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162665628|gb|EDQ52305.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 445
Score = 151 bits (381), Expect = 4e-34, Method: Composition-based stats.
Identities = 48/235 (20%), Positives = 95/235 (40%), Gaps = 17/235 (7%)
Query: 487 TRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEA 546
R + L G N + F G G +GK+ +++L++ AFG+ Y + S +M R ++
Sbjct: 1 MRFISSCLEGRNANKIFSIWSGSGDNGKTVMVSLVERAFGD-YAVKMPTSLLMGKRV-QS 58
Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
A P + L G I ++ E +E D++N +K++ G D + R Y + P +
Sbjct: 59 LAATPEVAMLKGRLIALVEEPDEGDKLNLGVMKELKGNDSLYVRGLYKEG-AVIPQTAKF 117
Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
++ N+ ++ D P + RD +F+ K+ + ++ K Y
Sbjct: 118 VLIANRISQMKPSHD---------PLTTHL--RDVNFSNKIPL-LAPVFMRLVIEEYKQY 165
Query: 667 ISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEY 721
++ GL + P E D + ++ + L +Y +
Sbjct: 166 LTYGL--EEPNDVKDCTETIHVSNDIFGQFLSANVEKSNKSIVAIKELYDTYKYW 218
>gi|330910991|gb|EGH39501.1| DNA primase , phage-associated / Replicative helicase RepA
[Escherichia coli AA86]
Length = 606
Score = 151 bits (381), Expect = 5e-34, Method: Composition-based stats.
Identities = 62/362 (17%), Positives = 126/362 (34%), Gaps = 38/362 (10%)
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSG 475
+++ +G +G+ D TG + K ++ ++ PF + F +
Sbjct: 234 NTARNLIGFSNGVFDTRTGNFREHNKNDWLLIASELPFSPPAEGETLATHAPNFWKWLRR 293
Query: 476 -YFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
E++ D + M L Q FI + G GGSGKS + + G ++A
Sbjct: 294 SVAENDRKADRVLAALFMVLANRYDWQLFIEVTGPGGSGKSVMAEICTMLAGKANTVSAS 353
Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
+ R ++G ++I+ + + A IK +TGGD + +
Sbjct: 354 MKALEDARER---------ALVVGFSLIIMPDMTRYAG-DGAGIKAITGGDKVAIDPKHK 403
Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFD--KPIANRDASFAQKLETKYT 652
YS + + N + RR ++ F P RD+ A+K+E +
Sbjct: 404 APYSTRIPAVVLAVNNNAM-SFSDRSGGISRRRVIFNFSEVVPENERDSMLAEKIEGELA 462
Query: 653 LEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID--------DCCDIG 704
+ + + ++ L + + +A +R+G D+ + D +G
Sbjct: 463 VVIRHLLTRFADQDEARRLLYEQ-QKSEEALAIKREG-DSLVDFCGYLMASVMCDGLLVG 520
Query: 705 ENLWEESHS---LAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWK 761
L +Y Y K ++ ++ G + RE ++++ K
Sbjct: 521 NAEIVPFSPRRYLYHAYLAYMRAHG--FGKPVTLTRFGKDMP--GAMAEYGREYMKRKTK 576
Query: 762 SK 763
Sbjct: 577 HG 578
>gi|312945751|gb|ADR26578.1| putative DNA primase from prophage [Escherichia coli O83:H1 str.
NRG 857C]
Length = 606
Score = 151 bits (381), Expect = 5e-34, Method: Composition-based stats.
Identities = 62/362 (17%), Positives = 126/362 (34%), Gaps = 38/362 (10%)
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSG 475
+++ +G +G+ D TG + K ++ ++ PF + F +
Sbjct: 234 NTARNLIGFSNGVFDTRTGNFREHNKNDWLLIASELPFSPPAEGETLATHAPNFWKWLRR 293
Query: 476 -YFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
E++ D + M L Q FI + G GGSGKS + + G ++A
Sbjct: 294 SVAENDRKADRVLAALFMVLANRYDWQLFIEVTGPGGSGKSVMAEICTMLAGKANTVSAS 353
Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
+ R ++G ++I+ + + A IK +TGGD + +
Sbjct: 354 MKALEDARER---------ALVVGFSLIIMPDMTRYAG-DGAGIKAITGGDKVAIDPKHK 403
Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFD--KPIANRDASFAQKLETKYT 652
YS + + N + RR ++ F P RD+ A+K+E +
Sbjct: 404 APYSTRIPAVVLAVNNNAM-SFSDRSGGISRRRVIFNFSEVVPENERDSMLAEKIEGELA 462
Query: 653 LEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID--------DCCDIG 704
+ + + ++ L + + +A +R+G D+ + D +G
Sbjct: 463 VVIRHLLTRFADQDEARRLLYEQ-QKSEEALAIKREG-DSLVDFCGYLMASVMCDGLLVG 520
Query: 705 ENLWEESHS---LAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWK 761
L +Y Y K ++ ++ G + RE ++++ K
Sbjct: 521 NAEIVPFSPRRYLYHAYLAYMRAHG--FGKPVTLTRFGKDMP--GAMAEYGREYMKRKTK 576
Query: 762 SK 763
Sbjct: 577 HG 578
>gi|223932863|ref|ZP_03624859.1| phage/plasmid primase, P4 family [Streptococcus suis 89/1591]
gi|223898444|gb|EEF64809.1| phage/plasmid primase, P4 family [Streptococcus suis 89/1591]
Length = 480
Score = 151 bits (381), Expect = 5e-34, Method: Composition-based stats.
Identities = 53/315 (16%), Positives = 104/315 (33%), Gaps = 31/315 (9%)
Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE------FLDLVSGY-FES 479
+ Q+GI+DL+T + + + + IT T + F + ++
Sbjct: 121 NLIPVQNGIIDLKTKELLPFSPKYVITSKISTAYHAPTTVPTDREGNTFDNWLNSIACND 180
Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539
E++ F + + A+ + +F G G +GK T + G + + +
Sbjct: 181 SELVTLFWQIILEAINPNHTRNKFAIFYGDGNNGKGTFQRFLINLIGESNISALKPAQFA 240
Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599
+ E L+G I E N + + +T GD + +
Sbjct: 241 EKHNLET---------LVGKVCNIGDEAPNEYLKNPSDLMSITSGDTVLVNPKGRPAFE- 290
Query: 600 SPASFTPF--IVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEA 655
A+F F N N W+RR +++PF+ + +
Sbjct: 291 --ATFKLFNIFSGNYIPNGGNKTKGWYRRIMIVPFNADFNGEKEKPWIKNEFLAN--QKV 346
Query: 656 KKWFLKGVKAYISKGL-DVDIPEVCLKAKEEERQGTDTYQAWI-DDCCDIG--ENLWEES 711
++ L KA + P+ EE ++ D +W+ ++ + G E
Sbjct: 347 LEYAL--YKAINQEPFTHFIEPQAAKGLLEEYQEDNDYLLSWVKNEYMEKGWHELEVVPV 404
Query: 712 HSLAKSYSEYREQEL 726
L +S Y E
Sbjct: 405 FILTRSLKHYAEDMG 419
>gi|253687111|ref|YP_003016301.1| phage/plasmid primase, P4 family [Pectobacterium carotovorum subsp.
carotovorum PC1]
gi|251753689|gb|ACT11765.1| phage/plasmid primase, P4 family [Pectobacterium carotovorum subsp.
carotovorum PC1]
Length = 775
Score = 151 bits (381), Expect = 5e-34, Method: Composition-based stats.
Identities = 64/378 (16%), Positives = 129/378 (34%), Gaps = 51/378 (13%)
Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
R +G ++G+ D +GQ +E ++ + + + F ++
Sbjct: 411 RRLIGFRNGVFDTASGQFKPHRREHWLNTVNDVDYTPFKAGENLADNAPHFWRWLTRAAG 470
Query: 479 S-EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
+ + + + M L Q F+ + G GGSGKS L + G A +
Sbjct: 471 NSADKQERILAALFMVLANCYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNTTAATINT 530
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
I +R + ++G ++++ + E + A IK +TGGD + Y + Y
Sbjct: 531 IESSRERSS---------IIGFSLIVLPD-QEKWSGDGAGIKAITGGDAVMVDPKYRDAY 580
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655
S + V N + + RR ++I F + I RD +K+ + +
Sbjct: 581 STRIPA-VILAVNNSPMRFSDRSGGVSRRRVIIHFGETIPASERDPKLKEKIRAELAVIV 639
Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKE------EERQGTDTYQAWIDDCCDIGENL-- 707
+ + + D + L+A++ E ++ D + G+
Sbjct: 640 --------RHLMKRFADPNDARTLLQAQQHSAEALEIKRQADPLVDFCGYLLAHGDTTGL 691
Query: 708 ---------WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEK 758
L +Y + E + +K IS L + + K
Sbjct: 692 YMGNANITPRNPRKYLYHAYLSFMESHGH--QKPISLTAFGKVLPN---MMSEYGQTYLK 746
Query: 759 EWKSKRIIKGLKLKPAFE 776
++ I L+LK +
Sbjct: 747 GRTNQGIQTNLELKDESD 764
>gi|300724194|ref|YP_003713512.1| putative P4-specific DNA primase [Xenorhabdus nematophila ATCC
19061]
gi|297630729|emb|CBJ91394.1| putative P4-specific DNA primase [Xenorhabdus nematophila ATCC
19061]
Length = 812
Score = 151 bits (380), Expect = 7e-34, Method: Composition-based stats.
Identities = 59/370 (15%), Positives = 119/370 (32%), Gaps = 60/370 (16%)
Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFV----------EGEPSQEFLDLVSG 475
+G ++G+ DL+ GQ K ++ + F +L+ +
Sbjct: 444 RHLIGFRNGVFDLKIGQFRPHHKHDWLLLANDVEFNSPVSGETLHSHAPQFWHWLNRATA 503
Query: 476 YFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535
+ E++ + + M L Q F+ + G GGSGKS + G ++A
Sbjct: 504 HCENK--AERVLAALFMVLANRYDWQLFLEVTGAGGSGKSIFAEICMMLAGKGNTVSASM 561
Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595
+ + R ++G ++I+ + + + IK +TGGD + +
Sbjct: 562 AALENPRER---------ALIVGYSLIILPDQTRYVG-DGSGIKAITGGDEVAIDPKHKQ 611
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFD--KPIANRDASFAQKLETKYTL 653
YS + + N + RR ++ F P RD K+ + +
Sbjct: 612 PYSTRIPAVVLAVNNNAM-SFSDRSGGVSRRRVIFNFSEVVPENERDPLLRDKIAAELPV 670
Query: 654 EAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWI------- 697
++ P+ + E+ ++GTD +
Sbjct: 671 IIRQLL-----------HRFADPQTARRLLAEQQKSEEALDIKRGTDPLVDFCGYLVASH 719
Query: 698 -DDCCDIGENLWE---ESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKR 753
D IG L +Y Y + N K +S +++ G + +
Sbjct: 720 ETDGLLIGNAEIVPFNPRKYLYHAYLAY--MKGNNLNKPVSVTRFGMDMP--GALAEYNQ 775
Query: 754 EKIEKEWKSK 763
+ K+ K
Sbjct: 776 HYLRKKSKQG 785
>gi|331664205|ref|ZP_08365111.1| bacteriophage P4 DNA primase [Escherichia coli TA143]
gi|331058136|gb|EGI30117.1| bacteriophage P4 DNA primase [Escherichia coli TA143]
Length = 591
Score = 150 bits (379), Expect = 8e-34, Method: Composition-based stats.
Identities = 62/362 (17%), Positives = 124/362 (34%), Gaps = 38/362 (10%)
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSG 475
+++ +G +G+ D TG K ++ ++ PF + F +
Sbjct: 219 NTARNLIGFSNGVFDTRTGNFRGHNKNDWLLIASELPFSPPAEGETLATHAPNFWKWLRR 278
Query: 476 -YFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
E++ D + M L Q FI + G GGSGKS + + G ++A
Sbjct: 279 SVAENDRKADRVLAALFMVLANRYDWQLFIEVTGPGGSGKSVMAEICTMLAGKANTVSAS 338
Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
+ R ++G ++I+ + + A IK +TGGD + +
Sbjct: 339 MKALEDARER---------ALVVGFSLIIMPDMTRYAG-DGAGIKAITGGDKVAIDPKHK 388
Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFD--KPIANRDASFAQKLETKYT 652
YS + + N + RR ++ F P RD A+K+E +
Sbjct: 389 APYSTRIPAVVLAVNNNAM-SFSDRSGGISRRRVIFNFSEVVPENERDPMLAEKIEGELA 447
Query: 653 LEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID--------DCCDIG 704
+ + + ++ L + + +A +R+G D+ + D +G
Sbjct: 448 VVIRHLLTRFADQDEARRLLYEQ-QKSEEALAIKREG-DSLVDFCGYLMASVMCDGLLVG 505
Query: 705 ENLWEESHS---LAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWK 761
L +Y Y K ++ ++ G + RE ++++ K
Sbjct: 506 NAEIVPFSPRRYLYHAYLAYMRAHG--FGKPVTLTRFGKDMP--GAMAEYGREYMKRKTK 561
Query: 762 SK 763
Sbjct: 562 HG 563
>gi|289569622|ref|ZP_06449849.1| phiRv1 phage protein [Mycobacterium tuberculosis T17]
gi|289543376|gb|EFD47024.1| phiRv1 phage protein [Mycobacterium tuberculosis T17]
Length = 240
Score = 150 bits (379), Expect = 8e-34, Method: Composition-based stats.
Identities = 45/225 (20%), Positives = 73/225 (32%), Gaps = 29/225 (12%)
Query: 303 LASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSM 362
+A R ++ Y + + G ++ D + W D+ + A + L
Sbjct: 40 IAYRLAERYQDKLL--HVAGIGWHSWDGRRWAADDRGEAKR------AVLAELRQALSDS 91
Query: 363 KEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLL 422
D ++ + E S A F+ T L
Sbjct: 92 LNDKELRADV---------------------RKCESASGVAGVLDLAAALVPFAATVADL 130
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEV 482
DS L +G LDL T + ITK + S + ++ E V
Sbjct: 131 DSDPHLLNVANGTLDLHTLKLRPHAPADRITKICRGAYQSDTESPLWQAFLTRVLPDEGV 190
Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527
+ R G+ LLG + + GVG +GKS I+YA G+
Sbjct: 191 RGFVQRLAGVGLLGTVREHVLAILIGVGANGKSVFDKAIRYALGD 235
>gi|294508904|ref|YP_003566115.1| conserved hypothetical protein containing phage/plasmid primase P4,
C-terminal domain [Salinibacter ruber M8]
gi|294342041|emb|CBH22707.1| conserved hypothetical protein containing phage/plasmid primase P4,
C-terminal domain [Salinibacter ruber M8]
Length = 716
Score = 150 bits (379), Expect = 9e-34, Method: Composition-based stats.
Identities = 51/356 (14%), Positives = 116/356 (32%), Gaps = 31/356 (8%)
Query: 428 FLGEQDGILDL----ETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVM 483
++ +G DL ++ + E + + G F + S+E
Sbjct: 375 YIPVANG--DLFLDGDSVRLEDADPERAPLTRSDAAWDPGADCPCFERHLKNVMPSKEER 432
Query: 484 DYFTRCVGMALLG-GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542
+ G LL + + + G SGKST + +++ G+ V ++ R
Sbjct: 433 ETLQEYAGYCLLHWDIPLHKALFMVGPTASGKSTTLTVLRKLMGS--VSKLSPQQLVNGR 490
Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602
L G+ I S+ + + K++ GD + Y Y+ P
Sbjct: 491 FGP--------AELEGAWANIRSDISSAVLQDIGLFKEVVAGDPIFVERKYEQGYNIRP- 541
Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDA----SFAQKLETKYTLEAKKW 658
+ N+ DDA++RR +++ F I + +LE + +W
Sbjct: 542 TAKHLYSANQLPEASIDDDAFYRRILLVSFPTTIPKDERVNRSELDDRLELEL-DGVLRW 600
Query: 659 FLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAW-IDDCCDIGENL--WEESHSLA 715
++G+ I++ + + + + + + + G++ + +
Sbjct: 601 AVEGLMEVINQN-EFTHDLSPEQTRRRWESRSSSIGRFKVTALDVTGDHAEDFIPKEKVF 659
Query: 716 KSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771
+Y+++ ++T L Q + + R G +L
Sbjct: 660 SAYTQFCNDRGLAKE---DQNSLTRTLTQDP-KIADAQRTPPGHSRQVRCYTGFRL 711
>gi|300954445|ref|ZP_07166897.1| nucleoside triphosphatase, D5 family [Escherichia coli MS 175-1]
gi|300318595|gb|EFJ68379.1| nucleoside triphosphatase, D5 family [Escherichia coli MS 175-1]
Length = 605
Score = 150 bits (379), Expect = 9e-34, Method: Composition-based stats.
Identities = 62/362 (17%), Positives = 127/362 (35%), Gaps = 38/362 (10%)
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSG 475
+++ +G +G+ D TG + K ++ ++ PF + F +
Sbjct: 233 NTARNLIGFSNGVFDTRTGNFRQHNKNDWLLIASELPFSPPAEGETLATHAPNFWKWLRR 292
Query: 476 -YFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
E++ D + M L Q FI + G GGSGKS + + G ++A
Sbjct: 293 SVAENDRKADRVLAALFMVLANRYDWQLFIEVTGPGGSGKSVMAEICTMLAGKANTVSAS 352
Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
+ R ++G ++I+ + + A IK +TGGD + +
Sbjct: 353 MKALEDARER---------ALVVGFSLIIMPDMTRYAG-DGAGIKAITGGDKVAIDPKHK 402
Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFD--KPIANRDASFAQKLETKYT 652
YS + + N + RR ++ F P RD+ A+K+E +
Sbjct: 403 APYSTRIPAVVLAVNNNAM-SFSDRSGGISRRRVIFNFSEVVPENERDSMLAEKIEGELA 461
Query: 653 LEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID--------DCCDIG 704
+ + + ++ L + + +A +R+G D+ + D +G
Sbjct: 462 VVIRHLLTRFADQDEARRLLYEQ-QKSEEALAIKREG-DSLVDFCGYLMASVMCDGLLVG 519
Query: 705 ENLWEESHS---LAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWK 761
L +Y Y + K ++ ++ G + RE ++++ K
Sbjct: 520 NAEIVPFSPRRYLYHAYLAYMKAHG--FGKPVTLTRFGKDMP--GAMAEYGREYMKRKTK 575
Query: 762 SK 763
Sbjct: 576 HG 577
>gi|227329979|ref|ZP_03834003.1| hypothetical protein PcarcW_22648 [Pectobacterium carotovorum
subsp. carotovorum WPP14]
Length = 452
Score = 150 bits (379), Expect = 9e-34, Method: Composition-based stats.
Identities = 47/253 (18%), Positives = 95/253 (37%), Gaps = 21/253 (8%)
Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEF 469
I + R +G ++G+ D +G+ +E ++ + + + F
Sbjct: 147 IVPMQAEPQRRLIGFRNGVFDTVSGEFKPHRREHWLHTVNDVDYTPFKAGENLADNAPHF 206
Query: 470 LDLVSGYFES-EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528
++ + + + + M L Q F+ + G GGSGKS L + G+
Sbjct: 207 WRWLTRAAGNHPDKQERILAALFMVLANCYDWQLFLEVTGPGGSGKSILAEIAIMLAGDD 266
Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588
A + I +R + ++G ++++ + E + A IK +TGGD +
Sbjct: 267 NATAATINTIESSRERSS---------IIGFSLIVLPD-QEKWSGDGAGIKAITGGDAVM 316
Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQK 646
Y + YS + V N + + RR ++I F + I RD +K
Sbjct: 317 VDPKYRDAYSTRIPA-VILAVNNSPMRFSDRSGGVSRRRVIIHFGETIPASERDPKLKEK 375
Query: 647 LETKYTLEAKKWF 659
+ T+ + +
Sbjct: 376 IRTELAVIVRHLM 388
>gi|318604725|emb|CBY26223.1| zinc binding domain; DNA primase,Phage P4-associated; Replicative
helicase RepA, Phage P4-associated [Yersinia
enterocolitica subsp. palearctica Y11]
Length = 764
Score = 150 bits (378), Expect = 1e-33, Method: Composition-based stats.
Identities = 61/363 (16%), Positives = 124/363 (34%), Gaps = 40/363 (11%)
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSG 475
+ S +G Q+G+ DL+ Q ++ F E P + F ++
Sbjct: 389 EPSRHLIGFQNGVYDLKARQFRPHCANDWVQHHNDIIFTEPRPDENLARHAPHFAKWLAH 448
Query: 476 YFESE-EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
E M + M L Q F+ + G GGSGKS ++ G Q +
Sbjct: 449 AANDELPKMASIRAALFMILSNRFDWQLFLEVTGEGGSGKSVFTHIATLLAGRQNTASGN 508
Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
+ + Q R + +G ++ + + + A IK +TGGD + Y
Sbjct: 509 MAALDQARGR---------AQFVGKSLITLPDQVKYVG-EGAGIKAITGGDLVEIDGKYE 558
Query: 595 NTYSESPASFTPFIVPNKHLF-VRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKY 651
+S T + N RR ++ F+ P+ A++D +K+ +
Sbjct: 559 KQFSTLIT--TVVLATNNEPISFTERQGGIARRRVIFAFNHPVKEADKDPQIGEKIAAEL 616
Query: 652 TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENL---- 707
+ + + V K + + + + ++ D + ++GE +
Sbjct: 617 PVVIRCLLAEFVD--QDKARKLLLEQRDSREAMGIKRDADPLYGFCAHIVELGEAVGMYM 674
Query: 708 -------WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQ--KGFIGGIKREKIEK 758
L +Y Y E + ++ +S + + K F K+ + +K
Sbjct: 675 GTLAISPRAPRIYLYHAYLAYMEAYGH--QRSLSLTKFGKDFPKVMKEFGAEYKKARTDK 732
Query: 759 EWK 761
++
Sbjct: 733 GFR 735
>gi|315122493|ref|YP_004062982.1| P4 family phage/plasmid primase [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495895|gb|ADR52494.1| P4 family phage/plasmid primase [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 120
Score = 150 bits (378), Expect = 1e-33, Method: Composition-based stats.
Identities = 98/118 (83%), Positives = 108/118 (91%), Gaps = 2/118 (1%)
Query: 587 MTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQK 646
MTAR NYGNTYSE+ ASFTPFIV NKHLFVRN DDAWWRRYIVIPFDKPIANRDA+FAQK
Sbjct: 1 MTARFNYGNTYSEARASFTPFIVSNKHLFVRNLDDAWWRRYIVIPFDKPIANRDATFAQK 60
Query: 647 LETKYTLEAKKWFLKGVKAYISKG--LDVDIPEVCLKAKEEERQGTDTYQAWIDDCCD 702
LET+Y LEAKKWFL+G+KAYI G LD+D+PEVC+ AKEEER+GTDTYQAWIDDCC+
Sbjct: 61 LETEYALEAKKWFLEGIKAYIRNGRNLDIDVPEVCINAKEEERRGTDTYQAWIDDCCE 118
>gi|218690979|ref|YP_002399191.1| putative DNA primase from prophage [Escherichia coli ED1a]
gi|218428543|emb|CAR09471.2| putative DNA primase from prophage (possibly fragment) [Escherichia
coli ED1a]
Length = 606
Score = 150 bits (378), Expect = 1e-33, Method: Composition-based stats.
Identities = 61/362 (16%), Positives = 123/362 (33%), Gaps = 38/362 (10%)
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSG 475
+++ +G +G+ D TG + K+ ++ ++ PF + F +
Sbjct: 234 NTARHLIGFSNGVFDTRTGDFREHDKDDWLLIASELPFTPPAEGETLATHAPNFWKWLRR 293
Query: 476 -YFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
E++ D + M L Q FI + G GGSGKS + + G ++A
Sbjct: 294 SVAENDRKADRVLAALFMVLANRYDWQLFIEVTGPGGSGKSVMAEICTMLAGKANTVSAS 353
Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
+ R ++G ++I+ + + A IK +TGGD + +
Sbjct: 354 MKALEDARER---------ALVVGFSLIILPDMTRYAG-DGAGIKAITGGDKVAIDPKHK 403
Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFD--KPIANRDASFAQKLETKYT 652
YS + + N + + RR ++ F P RD +K+E +
Sbjct: 404 APYSTRIPAVVLAV-NNSAMSFSDRSGGISRRRVIFNFSEVVPENERDPMLPEKIEGELA 462
Query: 653 LEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID--------DCCDIG 704
+ + + + + +A +R+G D+ + D +G
Sbjct: 463 VVIRHLLTR-FSDQDEARRLLHEQQKSEEALAIKREG-DSLVDFCGYLMSSVMCDGLLVG 520
Query: 705 ENL---WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWK 761
+ L +Y Y K ++ ++ G + RE ++K K
Sbjct: 521 NAEIIPFSPRRYLYHAYLSYMRAHG--FSKPVTLTRFGADMP--GAMAEYGREYMKKRTK 576
Query: 762 SK 763
Sbjct: 577 EG 578
>gi|169834274|ref|YP_001693718.1| prophage Sa05, P4 family DNA primase [Streptococcus pneumoniae
Hungary19A-6]
gi|168996776|gb|ACA37388.1| prophage Sa05, DNA primase, P4 family [Streptococcus pneumoniae
Hungary19A-6]
Length = 489
Score = 150 bits (378), Expect = 1e-33, Method: Composition-based stats.
Identities = 54/315 (17%), Positives = 104/315 (33%), Gaps = 31/315 (9%)
Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE------FLDLVSGY-FES 479
+ Q+GI++LET + + + + IT T + + F D ++
Sbjct: 130 NLIPVQNGIINLETKELLPFSPKYVITSKISTAYHAPKRVPTDREGKTFDDWLNSIACND 189
Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539
E++ F + + A+ + +F G G +GK T + G + + +
Sbjct: 190 SELVTLFWQIILEAINPNHTRNKFAIFYGDGNNGKGTFQRFLINLIGESNISALKPAQFA 249
Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599
+ E L+G I E N + + +T GD + +
Sbjct: 250 EKHNLET---------LVGKVCNIGDEAPNEYLKNPSDLMSITSGDTVLVNPKGRPAFE- 299
Query: 600 SPASFTPF--IVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEA 655
A+F F N N W+RR +++PF+ + E
Sbjct: 300 --ATFKLFNIFSGNYIPNGGNKTKGWYRRIMIVPFNADFNGEKEKPWIKNEFLAN--KEV 355
Query: 656 KKWFLKGVKAYISKGL-DVDIPEVCLKAKEEERQGTDTYQAWI-DDCCDIG--ENLWEES 711
++ L KA + P+ EE ++ D +W+ + + G E
Sbjct: 356 LEYAL--YKAINQEPFTHFIEPKAVKGLLEEYQEDNDYLLSWVKHEYMEKGWHELDVVPV 413
Query: 712 HSLAKSYSEYREQEL 726
+ +S Y E
Sbjct: 414 FIVTRSLKHYAEDMG 428
>gi|298229143|ref|ZP_06962824.1| prophage Sa05, DNA primase, P4 family protein [Streptococcus
pneumoniae str. Canada MDR_19F]
gi|298255093|ref|ZP_06978679.1| prophage Sa05, DNA primase, P4 family protein [Streptococcus
pneumoniae str. Canada MDR_19A]
Length = 495
Score = 149 bits (377), Expect = 1e-33, Method: Composition-based stats.
Identities = 54/315 (17%), Positives = 104/315 (33%), Gaps = 31/315 (9%)
Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE------FLDLVSGY-FES 479
+ Q+GI++LET + + + + IT T + + F D ++
Sbjct: 136 NLIPVQNGIINLETKELLPFSPKYVITSKISTAYHAPKRVPTDREGKTFDDWLNSIACND 195
Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539
E++ F + + A+ + +F G G +GK T + G + + +
Sbjct: 196 SELVTLFWQIILEAIDPNHTRNKFAIFYGDGNNGKGTFQRFLINLIGESNISALKPAQFA 255
Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599
+ E L+G I E N + + +T GD + +
Sbjct: 256 EKHNLET---------LVGKVCNIGDEAPNEYLKNPSDLMSITSGDTVLVNPKGRPAFE- 305
Query: 600 SPASFTPF--IVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEA 655
A+F F N N W+RR +++PF+ + E
Sbjct: 306 --ATFKLFNIFSGNYIPNGGNKTKGWYRRIMIVPFNADFNGEKEKPWIKNEFLAN--KEV 361
Query: 656 KKWFLKGVKAYISKGL-DVDIPEVCLKAKEEERQGTDTYQAWI-DDCCDIG--ENLWEES 711
++ L KA + P+ EE ++ D +W+ + + G E
Sbjct: 362 LEYAL--YKAINQEPFTHFIEPKAVKGLLEEYQEDNDYLLSWVKHEYMEKGWHELDVVPV 419
Query: 712 HSLAKSYSEYREQEL 726
+ +S Y E
Sbjct: 420 FIVTRSLKHYAEDMG 434
>gi|225377669|ref|ZP_03754890.1| hypothetical protein ROSEINA2194_03320 [Roseburia inulinivorans DSM
16841]
gi|225210533|gb|EEG92887.1| hypothetical protein ROSEINA2194_03320 [Roseburia inulinivorans DSM
16841]
Length = 459
Score = 149 bits (377), Expect = 1e-33, Method: Composition-based stats.
Identities = 54/363 (14%), Positives = 114/363 (31%), Gaps = 24/363 (6%)
Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ-EFLDLV 473
+ + + +G L L G + E + + P +L +
Sbjct: 83 LAALVEDFPPEPDRIHLSNGTLFL-DGTFAEGKPEN-VRNRFPVAYNPNAPKPVLWLQFL 140
Query: 474 SGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
G E + +G L+ NK QR + I+G GG GKS I G + N
Sbjct: 141 DGLLY-PEDIPTLQEYIGYCLIPSNKGQRMMVIKGSGGEGKSQ----IGAVLGTLFGSNM 195
Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM-TGGDCMTARLN 592
+ I + + + L + + + +K + T M
Sbjct: 196 KDGSI-----GKISENRFARADLEHILLCVDDDMRMEALRQTNYVKSIVTAQGKMDLERK 250
Query: 593 YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETK 650
+Y + + + D ++RR +V+ + A R D A+K++ +
Sbjct: 251 GKQSYQGWMCARLLAFSNGDLQALFDRSDGFYRRQLVLTTKEKPAGRVDDPDLAEKMKAE 310
Query: 651 YTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD--CCDIGENLW 708
W +G++ + + + +E ++ + ++D + +L
Sbjct: 311 -VEGILLWAFEGLQRLAANNFKFTESDRTRENREAVKRDNNNVYDFLDSDGYVRLKADLS 369
Query: 709 EESHSLAKSYSEYREQELNYDRKRISTRTVTLNLK--QKGFIGGIKREKIEKEWKSKRII 766
S L ++Y Y + + R+ + L Q + + R
Sbjct: 370 ASSKELYEAYQIYCTENN---LPALKPRSFSEALIACQSRYNLEYCNNVTNAAGRRVRGF 426
Query: 767 KGL 769
G+
Sbjct: 427 LGV 429
>gi|149017871|ref|ZP_01834330.1| putative phage replication protein [Streptococcus pneumoniae
SP23-BS72]
gi|147931435|gb|EDK82413.1| putative phage replication protein [Streptococcus pneumoniae
SP23-BS72]
Length = 492
Score = 149 bits (377), Expect = 1e-33, Method: Composition-based stats.
Identities = 55/315 (17%), Positives = 103/315 (32%), Gaps = 31/315 (9%)
Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE------FLDLVSGY-FES 479
+ Q+GI++LET + + + IT T + + F D ++
Sbjct: 133 NLIPVQNGIINLETKELFPFSPKYVITSKISTAYHAPKRVPTDREGKTFDDWLNSIACND 192
Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539
E++ F + + A+ + +F G G +GK T + G + + +
Sbjct: 193 SELVTLFWQIILEAINSNHTRNKFAIFYGDGNNGKGTFQRFLINLIGESNISALKPAQFA 252
Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599
+ E L+G I E N + + +T GD + +
Sbjct: 253 EKHNLET---------LVGKVCNIGDEAPNEYLKNPSDLMSITSGDTVLVNPKGRPAFE- 302
Query: 600 SPASFTPF--IVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEA 655
A+F F N N W+RR +++PF+ + E
Sbjct: 303 --ATFKLFNIFSGNYIPNGGNKTKGWYRRIMIVPFNADFNGEKEKPWIKNEFLAN--DEV 358
Query: 656 KKWFLKGVKAYISKGL-DVDIPEVCLKAKEEERQGTDTYQAWI-DDCCDIG--ENLWEES 711
++ L KA + P+ EE ++ D +W+ + + G E
Sbjct: 359 LEYAL--YKAINQEPFTHFIEPKAVKGLLEEYQEENDYLLSWVKHEYMERGWHELDVVPV 416
Query: 712 HSLAKSYSEYREQEL 726
L +S Y E
Sbjct: 417 FILTRSLKHYAEDMG 431
>gi|260855418|ref|YP_003229309.1| putative DNA primase [Escherichia coli O26:H11 str. 11368]
gi|257754067|dbj|BAI25569.1| putative DNA primase [Escherichia coli O26:H11 str. 11368]
Length = 605
Score = 149 bits (377), Expect = 1e-33, Method: Composition-based stats.
Identities = 62/367 (16%), Positives = 125/367 (34%), Gaps = 48/367 (13%)
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSG 475
+++ +G +G+ D TG + K ++ ++ PF + F +
Sbjct: 233 NTARNLIGFSNGVFDTRTGDFREHNKNDWLLIASELPFSPPAEGETLATHAPNFWKWLRR 292
Query: 476 -YFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
E++ D + M L Q FI + G GGSGKS + + G ++A
Sbjct: 293 SVAENDRKADRVLAALFMVLANRYDWQLFIEVTGPGGSGKSVMAEICTMLAGKANTVSAS 352
Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
+ R ++G ++I+ + + A IK +TGGD + +
Sbjct: 353 MKALEDARER---------ALVVGFSLIIMPDMTRYAG-DGAGIKAITGGDKVAIDPKHK 402
Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFD--KPIANRDASFAQKLETKYT 652
YS + + N + RR ++ F P RD A+K+E +
Sbjct: 403 APYSTRIQAVVLAVNNNAM-SFSDRSGGISRRRVIFNFSEVVPENERDPMLAEKIEGELA 461
Query: 653 LEAKKWFLK-----GVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID--------D 699
+ + + K + + + +A +R+G D+ + D
Sbjct: 462 VVIRHLLTRFSDQDAAKRLLYEQ------QKSEEALVIKREG-DSLVDFCGYLMSSVMCD 514
Query: 700 CCDIGENL---WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKI 756
+G + L +Y Y K ++ ++ G + RE +
Sbjct: 515 GLLVGNAEIIPFSPRRYLYHAYLAYMRAHG--FGKPVTLTRFGKDMP--GAMAEYGREYM 570
Query: 757 EKEWKSK 763
+++ K
Sbjct: 571 KRKTKHG 577
>gi|326338726|gb|EGD62546.1| DNA primase , phage-associated [Escherichia coli O157:H7 str. 1125]
Length = 604
Score = 149 bits (377), Expect = 2e-33, Method: Composition-based stats.
Identities = 59/362 (16%), Positives = 124/362 (34%), Gaps = 38/362 (10%)
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSG 475
+++ +G +G+ D TG + K ++ ++ PF + F +
Sbjct: 232 NAARNLIGFSNGVFDTRTGNFREHNKNDWLLIASELPFSPPAEGETLATHAPNFWKWLRR 291
Query: 476 -YFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
E++ D + M L Q F+ + G GGSGKS + + G ++A
Sbjct: 292 SVAENDRKADRVLAALFMVLANRYDWQLFLEVTGPGGSGKSVMAEICTMLAGKANTVSAS 351
Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
+ R ++G ++I+ + + A IK +TGGD + +
Sbjct: 352 MKALEDARER---------ALVVGFSLIIMPDMTRYAG-DGAGIKAITGGDKVAIDPKHK 401
Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYT 652
YS + + N + RR ++ F + + RD A+K+E +
Sbjct: 402 APYSTRIQAVVLAVNNNAM-SFSDRSGGISRRRVIFNFSEVVPENERDPMLAEKIEGELA 460
Query: 653 LEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID--------DCCDIG 704
+ + + + + +A +R+G D+ + D +G
Sbjct: 461 VVIRHLLTR-FSDQDEAKRLLYEQQKSEEALVIKREG-DSLVDFCGYLMSSVMCDGLLVG 518
Query: 705 ENL---WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWK 761
+ L +Y Y K ++ ++ G + RE ++++ K
Sbjct: 519 NAEIIPFSPRRYLYHAYLAYMRAHG--FGKPVTLTRFGKDMP--GAMAEYGREYMKRKTK 574
Query: 762 SK 763
Sbjct: 575 HG 576
>gi|225860228|ref|YP_002741737.1| prophage Sa05, DNA primase, P4 family [Streptococcus pneumoniae
Taiwan19F-14]
gi|298502000|ref|YP_003723940.1| prophage Sa05, P4 family DNA primase [Streptococcus pneumoniae
TCH8431/19A]
gi|225727584|gb|ACO23435.1| prophage Sa05, DNA primase, P4 family [Streptococcus pneumoniae
Taiwan19F-14]
gi|298237595|gb|ADI68726.1| prophage Sa05, P4 family DNA primase [Streptococcus pneumoniae
TCH8431/19A]
gi|327390605|gb|EGE88945.1| phage/plasmid primase, P4 family, C-terminal domain protein
[Streptococcus pneumoniae GA04375]
Length = 489
Score = 149 bits (377), Expect = 2e-33, Method: Composition-based stats.
Identities = 54/315 (17%), Positives = 104/315 (33%), Gaps = 31/315 (9%)
Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE------FLDLVSGY-FES 479
+ Q+GI++LET + + + + IT T + + F D ++
Sbjct: 130 NLIPVQNGIINLETKELLPFSPKYVITSKISTAYHAPKRVPTDREGKTFDDWLNSIACND 189
Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539
E++ F + + A+ + +F G G +GK T + G + + +
Sbjct: 190 SELVTLFWQIILEAIDPNHTRNKFAIFYGDGNNGKGTFQRFLINLIGESNISALKPAQFA 249
Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599
+ E L+G I E N + + +T GD + +
Sbjct: 250 EKHNLET---------LVGKVCNIGDEAPNEYLKNPSDLMSITSGDTVLVNPKGRPAFE- 299
Query: 600 SPASFTPF--IVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEA 655
A+F F N N W+RR +++PF+ + E
Sbjct: 300 --ATFKLFNIFSGNYIPNGGNKTKGWYRRIMIVPFNADFNGEKEKPWIKNEFLAN--KEV 355
Query: 656 KKWFLKGVKAYISKGL-DVDIPEVCLKAKEEERQGTDTYQAWI-DDCCDIG--ENLWEES 711
++ L KA + P+ EE ++ D +W+ + + G E
Sbjct: 356 LEYAL--YKAINQEPFTHFIEPKAVKGLLEEYQEDNDYLLSWVKHEYMEKGWHELDVVPV 413
Query: 712 HSLAKSYSEYREQEL 726
+ +S Y E
Sbjct: 414 FIVTRSLKHYAEDMG 428
>gi|168759751|ref|ZP_02784758.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC4501]
gi|217324190|ref|ZP_03440274.1| nucleoside triphosphatase, D5 family [Escherichia coli O157:H7 str.
TW14588]
gi|189369456|gb|EDU87872.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC4501]
gi|217320411|gb|EEC28835.1| nucleoside triphosphatase, D5 family [Escherichia coli O157:H7 str.
TW14588]
Length = 607
Score = 149 bits (376), Expect = 2e-33, Method: Composition-based stats.
Identities = 62/362 (17%), Positives = 125/362 (34%), Gaps = 38/362 (10%)
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSG 475
+++ +G +G+ D TG + K ++ ++ PF + F +
Sbjct: 235 NTARNLIGFSNGVFDTRTGDFREHDKNDWLLIASELPFTPPAEGETLATHAPNFWKWLRR 294
Query: 476 -YFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
E++ D + M L Q FI + G GGSGKS + + G ++A
Sbjct: 295 SVAENDRKADRVLAALFMVLANRYDWQLFIEVTGPGGSGKSVMAEICTMLAGKANTVSAS 354
Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
+ R ++G ++I+ + + A IK +TGGD + +
Sbjct: 355 MKALEDARER---------ALVVGFSLIILPDMTRYAG-DGAGIKAITGGDKVAIDPKHK 404
Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFD--KPIANRDASFAQKLETKYT 652
YS + + N + + RR ++ F P RD +K+E +
Sbjct: 405 APYSTRIPAVVLAV-NNSAMSFSDRSGGISRRRVIFNFSEVVPENERDPMLPEKIEGELA 463
Query: 653 LEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID--------DCCDIG 704
+ + + ++ L + + +A +R+G D+ + D +G
Sbjct: 464 VVIRHLLTRFADQDEARRLLYEQ-QKSEEALAIKREG-DSLVDFCGYLMSSVMCDGLLVG 521
Query: 705 ENL---WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWK 761
+ L +Y Y K ++ ++ G + RE ++K K
Sbjct: 522 NAEIIPFSPRRYLYHAYLSYMRAHG--FSKPVTLTRFGADMP--GAMAEYGREYMKKRTK 577
Query: 762 SK 763
Sbjct: 578 EG 579
>gi|46202140|ref|ZP_00053695.2| COG1197: Transcription-repair coupling factor (superfamily II
helicase) [Magnetospirillum magnetotacticum MS-1]
Length = 1185
Score = 149 bits (376), Expect = 2e-33, Method: Composition-based stats.
Identities = 59/300 (19%), Positives = 105/300 (35%), Gaps = 32/300 (10%)
Query: 6 WKEQAKQAIHNGFKLIPLRLGDKRPQRLGK-WEEQLLSSEKIDKLP--ACGFGFVCGVGE 62
+ A G+ +IP+ G KRP + G + L+ +++ + C + GV
Sbjct: 10 FGRDAVAYRRAGYYVIPVDPGTKRPDQRGWPIHARNLTVKQVAEWSIDPCTAKYGIGVLA 69
Query: 63 QPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKE----------G 112
A DID + + A+ E + G VRIG PK L + ++
Sbjct: 70 LATPAIDIDVRHPEAADEIDAAAERILGPAPVRIGAWPKRLRVYSGPEDMPYTSVGECAF 129
Query: 113 IKKKKTTESTQGH-LDIL-GCGQYFVAYNIHPKTKKEYTWTTPPHRFKVED-TPLLSEED 169
+ + H +++L G G+ FVA IHP T K Y W + D ++ E
Sbjct: 130 PGDDTAAKGYKWHNVEVLSGGGKQFVAAAIHPGTGKPYQWPSGDLLAWPHDRLTAITAEM 189
Query: 170 VEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYT--------NREITAFLSCFGEEF 221
VE E+ V L + ++ + + T + L+ +
Sbjct: 190 VEAFL---AEVRVILARHGAVSKGGRSAITSGGDRRTSVTGNNVGLSRVAEALAHVPND- 245
Query: 222 YNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTA 281
+ +W+ A+ G ++ R WS++ YD + W
Sbjct: 246 --ADYHDWVRYAYALKGAF--GEDGFDLWRDWSERSDKYDADYTETTWAGLKPRGAAGGV 301
>gi|39937604|ref|NP_949880.1| hypothetical protein RPA4546 [Rhodopseudomonas palustris CGA009]
gi|39651463|emb|CAE29986.1| conserved hypothetical protein [Rhodopseudomonas palustris CGA009]
Length = 770
Score = 149 bits (376), Expect = 2e-33, Method: Composition-based stats.
Identities = 50/258 (19%), Positives = 90/258 (34%), Gaps = 23/258 (8%)
Query: 32 RLGKWEEQLLSSEKIDKLP--ACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILH 89
+ + + G G + G G L A D D+ D+ A
Sbjct: 61 GYDWLNQPDPDEHDLARWQRMGAGVGIMTG-GPLNLIAVDADTLDQACAGKVMIAGMKHF 119
Query: 90 GTPIVRIGQKPKILIPFRMNKE------GIKKKKTTESTQGHLDILGCGQYFVAYNIHPK 143
G+ VRIG+ PK + R+ + +++L G+ FVA+ IHP
Sbjct: 120 GSTPVRIGRAPKAVYLIRVTEPIQYCRVEFGPLNDEGRRVDRVELLSDGRQFVAHGIHPV 179
Query: 144 TKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEI---TVPLVKDKKSIIPSKTWTNN 200
TKK Y WTTP V+ P+++ + + ++I T PLV + + S+
Sbjct: 180 TKKPYVWTTP--LCHVDKLPVVTPQQLAAFMDELRQILPNTGPLVTEGATTEVSQA---- 233
Query: 201 NNRQYTNREITAFLSCFGE-EFYNGSHDEWIPVVMAVHHETRGSS-KGKEIARRWSKQ-- 256
+ + ++ A ++ G+ + + A+ + EI W +
Sbjct: 234 -SLRGDIEKVRAAVAATPNTSAAFGTREAYRDFGYAIKAALPDDEPEAFEIFADWCARWE 292
Query: 257 GSTYDEENFNYKWDTFDF 274
D + W
Sbjct: 293 DGENDPDIVAADWRRMKP 310
>gi|307126159|ref|YP_003878190.1| prophage Sa05, DNA primase, P4 family [Streptococcus pneumoniae
670-6B]
gi|306483221|gb|ADM90090.1| prophage Sa05, DNA primase, P4 family [Streptococcus pneumoniae
670-6B]
Length = 492
Score = 149 bits (376), Expect = 2e-33, Method: Composition-based stats.
Identities = 54/315 (17%), Positives = 103/315 (32%), Gaps = 31/315 (9%)
Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE------FLDLVSGY-FES 479
+ Q+GI++LET + + + IT T + + F D ++
Sbjct: 133 NLIPVQNGIINLETKELFPFSPKYVITSKISTAYHAPKRVPTDREGKTFDDWLNSIACND 192
Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539
E++ F + + A+ + +F G G +GK T + G + + +
Sbjct: 193 SELVTLFWQIILEAINSNHTRNKFAIFYGDGNNGKGTFQRFLINLIGESNISALKPAQFA 252
Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599
+ E L+G I E N + + +T GD + +
Sbjct: 253 EKHNLET---------LVGKVCNIGDEAPNEYLKNPSDLMSITSGDTVLVNPKGRPAFE- 302
Query: 600 SPASFTPF--IVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEA 655
A+F F N N W+RR +++PF+ + E
Sbjct: 303 --ATFKLFNIFSGNYIPNGGNKTKGWYRRIMIVPFNADFNGEKEKPWIKNEFLAN--DEV 358
Query: 656 KKWFLKGVKAYISKGL-DVDIPEVCLKAKEEERQGTDTYQAWI-DDCCDIG--ENLWEES 711
++ L KA + P+ EE ++ D +W+ + + G E
Sbjct: 359 LEYAL--YKAINQEPFTHFIEPKAVKGLLEEYQEENDYLLSWVKHEYMERGWHELDVVPV 416
Query: 712 HSLAKSYSEYREQEL 726
L ++ Y E
Sbjct: 417 FILTRTLKHYAEDMG 431
>gi|269140399|ref|YP_003297100.1| bacteriophage P4 DNA primase [Edwardsiella tarda EIB202]
gi|267986061|gb|ACY85890.1| bacteriophage P4 DNA primase [Edwardsiella tarda EIB202]
Length = 611
Score = 149 bits (375), Expect = 2e-33, Method: Composition-based stats.
Identities = 63/370 (17%), Positives = 116/370 (31%), Gaps = 58/370 (15%)
Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
R +G ++G+LD TG +K ++ F + F +
Sbjct: 245 RRLIGFRNGVLDTSTGIFSPHSKTHWLRTLCDVDFTPPVEGETLETHAPNFWRWLDRAAG 304
Query: 479 S-EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
S + D + M L Q F+ + G GGSGKS L + G +A
Sbjct: 305 SRADKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNATSATIET 364
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
+ R L+G ++ + + E + A +K +TGGD ++ Y + Y
Sbjct: 365 LESPRER---------AALIGFSLIRLPD-QEKWSGDGAGLKAITGGDAVSVDPKYRDAY 414
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655
S + V N + + RR +++ F + IA RD K+ + +
Sbjct: 415 STHIPA-VILAVNNNPMRFTDRSGGVSRRRVIMHFPEQIAPEERDPKLKDKIARELAVIV 473
Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWI--------D 698
++ P + + ++ D +
Sbjct: 474 RQLM-----------QTFSDPMTARTLLQSQQNSDEALSIKRDADPTFDFCGYLEALPEP 522
Query: 699 DCCDIGENL---WEESHSLAKSYSEYREQELNYDRKRISTRTVTL----NLKQKGFIGGI 751
D +G + L +Y Y + Y + +S LK+ G G
Sbjct: 523 DGMYMGNANIIPRQPRLYLYHAYLVY-MEAHGY-KNTLSLTMFGKGLSSMLKEYGLNYGK 580
Query: 752 KREKIEKEWK 761
+R +
Sbjct: 581 RRTNQGMQTN 590
>gi|153949355|ref|YP_001399874.1| D5 family nucleoside triphosphatase [Yersinia pseudotuberculosis IP
31758]
gi|152960850|gb|ABS48311.1| nucleoside triphosphatase, D5 family [Yersinia pseudotuberculosis
IP 31758]
Length = 763
Score = 149 bits (375), Expect = 2e-33, Method: Composition-based stats.
Identities = 58/359 (16%), Positives = 123/359 (34%), Gaps = 38/359 (10%)
Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
+G Q+G+ DL+ Q ++ F E +P + F ++
Sbjct: 392 RHLIGFQNGVYDLKAKQFRPHRANDWLQHHNDIIFTEPQPDENLAHHAPHFTKWLAHAAN 451
Query: 479 SE-EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
E M + M L Q F+ + G GGSGKS + G Q + +
Sbjct: 452 DELPKMARIKAALFMILSNRFDWQLFLEVTGEGGSGKSVFTYIATLLAGRQNTASGNMAA 511
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
+ Q R + +G ++ + + + A IK +TGGD + Y +
Sbjct: 512 LDQARGR---------AQFVGKSLITLPDQVKYVG-EGAGIKAITGGDLVEIDGKYEKQF 561
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEA 655
S + + N+ + RR ++ F+ P+ A++D +K+ + +
Sbjct: 562 S-TLLTAVVLATNNEPMSFTERQGGIARRRVIFAFNHPVKEADKDPLIGEKIAAELPVVI 620
Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENL-------- 707
+ + K + + + + ++ D + ++GE +
Sbjct: 621 RCLLAEFAD--QDKARKLLLEQRDSREAMGVKRDADPLYGFCAHIVELGEAVGMYMGTLA 678
Query: 708 ---WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQ--KGFIGGIKREKIEKEWK 761
L +Y Y E + ++ +S + + K F K+ + +K ++
Sbjct: 679 ISPRAPRIYLYHAYLAYMEAYGH--QRSLSLTKFGKDFPKVMKEFGAEYKKARTDKGFR 735
>gi|186896546|ref|YP_001873658.1| P4 alpha zinc-binding domain-containing protein [Yersinia
pseudotuberculosis PB1/+]
gi|186699572|gb|ACC90201.1| P4 alpha zinc-binding domain protein [Yersinia pseudotuberculosis
PB1/+]
Length = 763
Score = 149 bits (375), Expect = 2e-33, Method: Composition-based stats.
Identities = 58/359 (16%), Positives = 123/359 (34%), Gaps = 38/359 (10%)
Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
+G Q+G+ DL+ Q ++ F E +P + F ++
Sbjct: 392 RHLIGFQNGVYDLKAKQFRPHRANDWLQHHNDIIFTEPQPDENLAHHAPHFTKWLAHAAN 451
Query: 479 SE-EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
E M + M L Q F+ + G GGSGKS + G Q + +
Sbjct: 452 DELPKMARIKAALFMILSNRFDWQLFLEVTGEGGSGKSVFTYIATLLAGRQNTASGNMAA 511
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
+ Q R + +G ++ + + + A IK +TGGD + Y +
Sbjct: 512 LDQARGR---------AQFVGKSLITLPDQVKYVG-EGAGIKAITGGDLVEIDGKYEKQF 561
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEA 655
S + + N+ + RR ++ F+ P+ A++D +K+ + +
Sbjct: 562 S-TLLTAVVLATNNEPMSFTERQGGIARRRVIFAFNHPVKEADKDPLIGEKIAAELPVVI 620
Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENL-------- 707
+ + K + + + + ++ D + ++GE +
Sbjct: 621 RCLLAEFAD--QDKARKLLLEQRDSREAMGVKRDADPLYGFCAHIVELGEAVGMYMGTLA 678
Query: 708 ---WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQ--KGFIGGIKREKIEKEWK 761
L +Y Y E + ++ +S + + K F K+ + +K ++
Sbjct: 679 ISPRAPRIYLYHAYLAYMEAYGH--QRSLSLTKFGKDFPKVMKEFGAEYKKARTDKGFR 735
>gi|299883481|ref|YP_003739032.1| hypothetical protein HacjB3_19528 [Halalkalicoccus jeotgali B3]
gi|299126907|gb|ADJ17241.1| hypothetical protein HacjB3_19528 [Halalkalicoccus jeotgali B3]
Length = 596
Score = 148 bits (374), Expect = 3e-33, Method: Composition-based stats.
Identities = 67/432 (15%), Positives = 149/432 (34%), Gaps = 25/432 (5%)
Query: 328 ADTKAW-----YKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKS 382
D+ +W ++ + + + + E ++ E ++
Sbjct: 109 PDSDSWSEILAMYENDDFGDTKKADYRAAEKLVEEYHIKTLESSEEVFWYDESEGTYKEN 168
Query: 383 PRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDL-LDSSSRFLGEQDGILDLETG 441
+ + S+ + D + F+ ++G+L+L
Sbjct: 169 GGKKVDKVLNDRLKWLCDNRTKGEVKSRLQSMSWVMEDTVFNPPEGFICVKNGVLNLTDP 228
Query: 442 ---QKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGN 498
+ + E K+ TP++EG +Q F+D + + +++ G+AL
Sbjct: 229 DNPELEDHSPEYGFRKNMDTPYIEGAENQLFVDSLEETVQDKDLEK-LQEYTGIALEDWE 287
Query: 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMG 558
+ + + G +GK T ++ I+ FG V ++ +R L
Sbjct: 288 QPTKMAVLIGPQNAGKGTYLHAIESIFGKGNVAAEPIKELADSRWSTNS--------LKD 339
Query: 559 SRIVIISETNENDEINAAKIKQMTGG-DCMTARLNYGNTYSESPASFTPFIVPNKHLFVR 617
+ I +E + + +K +TGG D A + Y P S N+ +
Sbjct: 340 RPLNIANELSTEKVNHQEAVKTLTGGGDSKRAEDKGDSVYEFIPTS-NHLFATNQLPEMP 398
Query: 618 NPDDAWWRRYIVIPF--DKPIANRDASFAQKLETKY--TLEAKKWFLKGVKAYISKGLDV 673
D ++ R++ + F P +RDAS +K+ W ++G S+G
Sbjct: 399 GADGIFYNRFLFVDFPQTVPKEDRDASLDEKMVESEQRRAGILNWLIEGYARIKSRGKTG 458
Query: 674 DIPEVCLK-AKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKR 732
E+ + + + +I+ C + E + +++ + Y Y + +
Sbjct: 459 YTNELSEADKISKWHSYGSSIERFIETCIETDEAVEDDARTKKDLYQTYLRMSKDANLPC 518
Query: 733 ISTRTVTLNLKQ 744
+ T+T LK+
Sbjct: 519 KAQATLTGKLKK 530
>gi|168756423|ref|ZP_02781430.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC4401]
gi|168770139|ref|ZP_02795146.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC4486]
gi|227883824|ref|ZP_04001629.1| bacteriophage P4 DNA primase [Escherichia coli 83972]
gi|189356437|gb|EDU74856.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC4401]
gi|189360975|gb|EDU79394.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC4486]
gi|227839102|gb|EEJ49568.1| bacteriophage P4 DNA primase [Escherichia coli 83972]
gi|307555753|gb|ADN48528.1| nucleoside triphosphatase [Escherichia coli ABU 83972]
Length = 604
Score = 148 bits (374), Expect = 3e-33, Method: Composition-based stats.
Identities = 59/362 (16%), Positives = 124/362 (34%), Gaps = 38/362 (10%)
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSG 475
+++ +G +G+ D TG + K ++ ++ PF + F +
Sbjct: 232 NTARNLIGFSNGVFDTRTGNFREHNKNDWLLIASELPFSPPAEGETLATHAPNFWKWLRR 291
Query: 476 -YFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
E++ D + M L Q F+ + G GGSGKS + + G ++A
Sbjct: 292 SVAENDRKADRVLAALFMVLANRYDWQLFLEVTGPGGSGKSVMAEICTMLAGKANTVSAS 351
Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
+ R ++G ++I+ + + A IK +TGGD + +
Sbjct: 352 MKALEDARER---------ALVVGFSLIIMPDMTRYAG-DGAGIKAITGGDKVAIDPKHK 401
Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYT 652
YS + + N + RR ++ F + + RD A+K+E +
Sbjct: 402 APYSTRIQAVVLAVNNNAM-SFSDRSGGISRRRVIFNFSEVVPENERDPMLAEKIEGELA 460
Query: 653 LEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID--------DCCDIG 704
+ + + + + +A +R+G D+ + D +G
Sbjct: 461 VVIRHLLTR-FSDQDEAKRLLYEQQKSEEALVIKREG-DSLVDFCGYLMSSVMCDGLLVG 518
Query: 705 ENL---WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWK 761
+ L +Y Y K ++ ++ G + RE ++++ K
Sbjct: 519 NAEIIPFSPRRYLYHAYLAYMRAHG--FGKPVTLTRFGKDMP--GAMAEYGREYMKRKTK 574
Query: 762 SK 763
Sbjct: 575 HG 576
>gi|113460678|ref|YP_718744.1| phage DNA primase-like protein [Haemophilus somnus 129PT]
gi|112822721|gb|ABI24810.1| phage DNA primase-like protein [Haemophilus somnus 129PT]
Length = 636
Score = 148 bits (374), Expect = 3e-33, Method: Composition-based stats.
Identities = 68/432 (15%), Positives = 137/432 (31%), Gaps = 58/432 (13%)
Query: 384 RFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDS------SSRFLGEQDGILD 437
+ + E N+ S ++ L D +FL ++G+L+
Sbjct: 222 ENALQREIKTFFSEYNANYGSVETINNMIKCLTVDLPLFDDEIKAAMDYQFLAFKNGVLN 281
Query: 438 LETGQKVKPTKELYITKSTGTPFVEG-EPSQEFLDLVSGYFESE-EVMDYFTRCVGMALL 495
T + KE Y+T ++E P+ F + E + M L
Sbjct: 282 KRTLAFLPHKKEYYLTAINPCDYLETQTPTPNFDKWLDFISNDSIERKKALLAALYMILN 341
Query: 496 GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIR 555
+ Q + G GSGKST +N+ K G+ + + + ++
Sbjct: 342 NRSDWQLTLEFIGEPGSGKSTFLNVAKMLSGDANHVAIDLETLQRDSKTRD--------M 393
Query: 556 LMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLF 615
L+ + + ++ +K ++GGD + T+S + + I N
Sbjct: 394 LLNKTFLYAPDQGRYIG-ESSVLKAISGGDEILVNPKGKKTFS-ARINAIIAICSNTLPI 451
Query: 616 VRNPDDAWWRRYIVIPFDKPIAN--RDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDV 673
+N RR +V PF K I + RD +K++ + +K + +
Sbjct: 452 YKNDGGGMERRRVVFPFYKAIDDSARDDKLTEKIQAELGGIIRKLYDE-----------F 500
Query: 674 DIPEVCLKAKEEERQ---------GTDTYQAWI----------DDCCDIGENLWEESHS- 713
PE +A ++++ D +I +DC +G + ++
Sbjct: 501 KDPEDAKQALKQQKASAEALKMKTENDHILEFIQEFELISQPSNDCLILGSSRGIPAYES 560
Query: 714 ------LAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIK 767
Y Y + + + Q F ++ ++
Sbjct: 561 PLIFERFYWCYLYYCYITGREGKFILKPVEFKKEVIQA-FKTIGEKPFTARQLGGGYNYT 619
Query: 768 GLKLKPAFESVD 779
K K E+V+
Sbjct: 620 NAKFKNKHETVN 631
>gi|125625287|ref|YP_001033770.1| hypothetical protein llmg_2534 [Lactococcus lactis subsp. cremoris
MG1363]
gi|124494095|emb|CAL99096.1| conserved hypothetical protein [Lactococcus lactis subsp. cremoris
MG1363]
gi|300072099|gb|ADJ61499.1| hypothetical protein LLNZ_13090 [Lactococcus lactis subsp. cremoris
NZ9000]
Length = 542
Score = 148 bits (374), Expect = 3e-33, Method: Composition-based stats.
Identities = 52/325 (16%), Positives = 116/325 (35%), Gaps = 21/325 (6%)
Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFL-----DLVSGYF- 477
+ + + +GI + +T Q + + T + T + + D ++
Sbjct: 175 AEAHLIPVANGIFNKKTQQLEPFSPKYVFTSTIATKYNAKAKAPNINGWNIDDWLNDLMS 234
Query: 478 ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
+E++ + + + G ++ I + G G GK T +LI G + V + +A
Sbjct: 235 GDKELVKLLWQVISASTNGNYSYRKGIWLVGKGNDGKGTFQSLIMNLIGRENVASVKAEQ 294
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
+ +L +++G VI ++ + NA + GD +
Sbjct: 295 FSE---------RFALSQVVGKTCVIGDDSQVSYLDNAGNYFSVVTGDPVPIEAKGKQPT 345
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKK 657
+ N RN + +RR +++PF+K + ++ K + + +
Sbjct: 346 LAV-FNKLVIQSTNFLPKFRNKSNGTYRRLLIVPFEKSFTADNDNWKIKDDYIKRKDVLE 404
Query: 658 WFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKS 717
+ LK A D P+ ++ + D A+++D + + + + L+
Sbjct: 405 YVLK--IALSLNFDKFDEPKATQGLLDDFKISNDNVLAFVNDMFEEFVSDFLPTTFLSAL 462
Query: 718 YSEYREQELNYDRKRISTRTVTLNL 742
Y + E E K + R L
Sbjct: 463 YRAWCEDEG---VKPFTKREFENKL 484
>gi|284008872|emb|CBA75685.1| phage primase [Arsenophonus nasoniae]
Length = 477
Score = 148 bits (373), Expect = 3e-33, Method: Composition-based stats.
Identities = 58/374 (15%), Positives = 133/374 (35%), Gaps = 53/374 (14%)
Query: 345 SLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKS 404
L + + +N S + + +P +++ S+ +F + ++ +
Sbjct: 121 KLLISRYGRLAVNMESSTIYNYNGIIWQPIKDSELSREMANFFTENNTHFSMRRINGVID 180
Query: 405 TAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGE 464
+ + I LD +G +G+L+ + + + ++ G + E
Sbjct: 181 VLKVIAE----PIRERDLD----VIGFANGVLNTKNHKFSPHNPDDWLLHENGITYTEAV 232
Query: 465 PSQ----------EFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGK 514
+ ++L+ VSG + + + M L Q FI + GVGGSGK
Sbjct: 233 EGETLEANAPNYTKWLNHVSG--GNADKARRIKAGLYMVLANRYDWQLFIEVTGVGGSGK 290
Query: 515 STLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEIN 574
S M++ ++ G + E + R + +G +++++ + +
Sbjct: 291 SVFMHIAEFLTGKHNTSSGELKSLDDARGR---------AQFVGKKLILLPDQRKYSGDG 341
Query: 575 AAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK 634
+K +TGGD + Y +S S I N+ + + RR ++ F++
Sbjct: 342 EG-LKAITGGDDVGIDPKYEKQFSMVMKS-VVIITGNRPMQFTERHNGIARRRVIFHFNE 399
Query: 635 PIANRDAS--FAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEER----- 687
+ ++D +K+E + + + L+ PE + E+R
Sbjct: 400 SVPDKDKDKKLTEKIEAEIPVIIRDLLLE-----------FTQPEKAYQLLLEQRDSGEA 448
Query: 688 ----QGTDTYQAWI 697
+ +D +
Sbjct: 449 TEVKRESDPLIDFC 462
>gi|240142182|ref|YP_002966692.1| hypothetical protein MexAM1_META2p0504 [Methylobacterium extorquens
AM1]
gi|240012126|gb|ACS43351.1| Hypothetical protein MexAM1_META2p0504 [Methylobacterium extorquens
AM1]
Length = 1438
Score = 148 bits (373), Expect = 4e-33, Method: Composition-based stats.
Identities = 51/205 (24%), Positives = 86/205 (41%), Gaps = 28/205 (13%)
Query: 6 WKEQAKQAIHNGFKLIPLRL-GDKR-PQRLG----KWEEQLLSSEKIDK----------L 49
+ + A++ + NG+ + P + GD+R P R+ KW E E++ +
Sbjct: 42 FGDVARELVANGWAVYPQEIYGDRRLPGRIRREVIKWREDHRLDERLPRPEALEEWIRWC 101
Query: 50 PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFE-ILHGTPIVRIGQKPKILIPFR- 107
PA V G G ++ DID DE + + E IL TP+ R+G PK+ + FR
Sbjct: 102 PAHNVALVLGRGSGDAFSVDIDVLDELLSYDIRRLAEDILGATPLRRVGNAPKVALFFRW 161
Query: 108 --------MNKEGIK-KKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTW-TTPPHRF 157
+ + K + T + LDIL + Y H +T + ++W P
Sbjct: 162 ASPEEAHKLQRTAFKFRDATGRGREQGLDILNYAKSVTIYGRHHRTGRNFSWEADTPLTT 221
Query: 158 KVEDTPLLSEEDVEYLFKFFQEITV 182
+ ED P ++ EDV+ +
Sbjct: 222 RPEDLPAVTAEDVQRFVDAVDVLHP 246
>gi|168798600|ref|ZP_02823607.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC508]
gi|189378766|gb|EDU97182.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC508]
Length = 608
Score = 147 bits (372), Expect = 5e-33, Method: Composition-based stats.
Identities = 62/362 (17%), Positives = 124/362 (34%), Gaps = 38/362 (10%)
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSG 475
+++ +G +G+ D TG + K ++ ++ PF + F +
Sbjct: 236 NTARNLIGFSNGVFDTRTGNFREHNKNDWLLIASELPFSPPAEGETLATHAPNFWKWLRR 295
Query: 476 -YFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
E++ D + M L Q FI + G GGSGKS + + G ++A
Sbjct: 296 SVAENDRKADRVLAALFMVLANRYDWQLFIEVTGPGGSGKSVMAEICTMLAGKANTVSAS 355
Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
+ R ++G ++I+ + + A IK +TGGD + +
Sbjct: 356 IKALEDARER---------ALVVGFSLIILPDMTRYAG-DGAGIKAITGGDKVAIDPKHK 405
Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFD--KPIANRDASFAQKLETKYT 652
YS + + N + + RR ++ F P RD +K+E +
Sbjct: 406 APYSTRIPAVVLAV-NNSAMSFSDRSGGISRRRVIFNFSEVVPENERDPMLPEKIEGELA 464
Query: 653 LEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID--------DCCDIG 704
+ + + ++ L + + +A +R+G D+ + D +G
Sbjct: 465 VVIRHLLTRFADQDEARRLLYEQ-QKSEEALAIKREG-DSLVDFCGYLMSSVMCDGLLVG 522
Query: 705 ENLWEESHS---LAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWK 761
L +Y Y K ++ ++ G + RE ++K K
Sbjct: 523 NAEIVPFSPRRYLYHAYLAYMRAHG--FGKPVTLTRFGADMP--GAMAEYGREYMKKRTK 578
Query: 762 SK 763
Sbjct: 579 EG 580
>gi|260589348|ref|ZP_05855261.1| putative primase [Blautia hansenii DSM 20583]
gi|260540429|gb|EEX20998.1| putative primase [Blautia hansenii DSM 20583]
Length = 458
Score = 147 bits (371), Expect = 6e-33, Method: Composition-based stats.
Identities = 70/383 (18%), Positives = 140/383 (36%), Gaps = 28/383 (7%)
Query: 396 VEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKS 455
V +K Q LE + + + + L + +G L G + K+ +
Sbjct: 85 VLTKGISKKVKQLLEVLKLEAYS-EELPVQMDRIHVNNGTYFL-NGDFTE--KKEFCLNR 140
Query: 456 TGTPFVEGEPSQE-FLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGK 514
+ E E +L +S E ++ + +G L+ NKAQ+ + I G GG GK
Sbjct: 141 LPVNYEMKEAKPERWLKFLSELLEEDD-ISTLQEYMGYCLIPSNKAQKLLIILGKGGEGK 199
Query: 515 STLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI- 573
S + +++ G N S+I + +AN R++++ + + + +
Sbjct: 200 SRIGLVMRKILG----TNMNVSNIQKVEHNRFARANLEY------RLLMVDDDMKLEALK 249
Query: 574 NAAKIKQM-TGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF 632
+ IK + T D M + + + + ++RR I++
Sbjct: 250 DTNYIKTIVTLEDKMDLERKSKQSVQGNLYVRFLCFGNGSLSALHDRSYGFYRRQIILTV 309
Query: 633 DKPIANR--DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGT 690
+R D +KL+ + W L+G+K + I E K E +
Sbjct: 310 KDVPPDRVDDPYLIEKLQREADD-IFLWCLEGLKRLLKNKYRFTISERAKKNLHEAMESG 368
Query: 691 DTYQAWIDD--CCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLK--QKG 746
+ A++ + EN S +L ++Y + E K +S ++ + LK +K
Sbjct: 369 NNIIAFMQSSGYIRLEENTTATSKNLYQAYCRWCEDNTE---KPMSAKSFSGYLKENEKK 425
Query: 747 FIGGIKREKIEKEWKSKRIIKGL 769
+ K+ R +G+
Sbjct: 426 YHIHYSTNIPSDNGKNARGFQGI 448
>gi|227329980|ref|ZP_03834004.1| hypothetical protein PcarcW_22653 [Pectobacterium carotovorum
subsp. carotovorum WPP14]
Length = 451
Score = 147 bits (371), Expect = 7e-33, Method: Composition-based stats.
Identities = 45/244 (18%), Positives = 91/244 (37%), Gaps = 21/244 (8%)
Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
R +G ++G+ D +G+ +E ++ + + + F ++
Sbjct: 156 RRLIGFRNGVFDTVSGEFKPHRREHWLHTVNDVDYTPFKAGENLADNAPHFWRWLTRAAG 215
Query: 479 SE-EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
+ + + + M L Q F+ + G GGSGKS L + G A +
Sbjct: 216 NNADKQERILAALFMVLANCYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNTTAATINT 275
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
I +R + ++G ++++ + E + A IK +TGGD + Y + Y
Sbjct: 276 IESSRERSS---------IIGFSLIVLPD-QEKWSGDGAGIKAITGGDAVMVDPKYRDAY 325
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655
S + V N + + RR ++I F + I RD +K+ + +
Sbjct: 326 STRIPA-VILAVNNSPMRFSDRSGGVSRRRVIIHFGETIPASERDPKLKEKIRAELAVIV 384
Query: 656 KKWF 659
+
Sbjct: 385 RHLM 388
>gi|281492874|ref|YP_003354854.1| phage DNA primase [Lactococcus lactis subsp. lactis KF147]
gi|281376526|gb|ADA66012.1| Phage protein, DNA primase [Lactococcus lactis subsp. lactis KF147]
Length = 542
Score = 147 bits (371), Expect = 7e-33, Method: Composition-based stats.
Identities = 57/356 (16%), Positives = 126/356 (35%), Gaps = 28/356 (7%)
Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE-----FLDLVSGYF- 477
+ + + +GI + +T Q + + T + T + D +
Sbjct: 175 AEAHLIPVANGIFNKKTQQLEPFSPKYVFTSTIATKYNAKAKVPNINGWNVDDWLLDLMS 234
Query: 478 ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
+E++ + + + G ++ + + G G GK T +LI G + V + +A
Sbjct: 235 GDKELVSLLWQIISASTNGNYSYRKGVWLVGKGNDGKGTFQSLIMNLIGRENVASVKAEQ 294
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
+ SL +++G +I ++ + NA + GD +
Sbjct: 295 FSE---------RFSLSQVVGKTCIIGDDSQVSYLDNAGNYFSVVTGDPVPIEAKGKQP- 344
Query: 598 SESPASF-TPFI-VPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
+ A F I N RN + +RR +++PF+K + ++ K + +
Sbjct: 345 --TLAVFNKLVIQSTNFLPKFRNKSNGTYRRLLIVPFNKSFTADNDNWKIKDDYIKRKDV 402
Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLA 715
++ LK + + D P+ ++ + D A+++D + + + + L+
Sbjct: 403 LEYVLKIALSLNFE--KFDEPKATQGLLDDFKISNDNVLAFVNDMFEEFVSDFLPTTFLS 460
Query: 716 KSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771
Y + E E K + R L + EK K + + + L
Sbjct: 461 ALYRAWCEDEG---VKPFTKREFENKLPD---HIKKEWEKTSKRPHTAGFNRAIDL 510
>gi|319939549|ref|ZP_08013909.1| DNA primase [Streptococcus anginosus 1_2_62CV]
gi|319811535|gb|EFW07830.1| DNA primase [Streptococcus anginosus 1_2_62CV]
Length = 483
Score = 147 bits (371), Expect = 7e-33, Method: Composition-based stats.
Identities = 44/284 (15%), Positives = 95/284 (33%), Gaps = 24/284 (8%)
Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGE------PSQEFLDLVSGY- 476
S + ++GI DL+ + + I T + + +F + +
Sbjct: 122 SDRNLIPVKNGIFDLKRKALLPFSPSYIIKSKINTAYHDKPMKPILDKWFDFDEWLKSIA 181
Query: 477 FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEAS 536
E+++ + + A+ + + G G +GK T +L+ G + + N + +
Sbjct: 182 CNDEDIVTLLWQIMNEAINPNYTRGKMAILYGEGNNGKGTFQSLLINLIGAKNISNLKPN 241
Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNT 596
+ + L L G I + + + + + GD + +
Sbjct: 242 QFEE---------SFQLSALEGKVCNIGDDISNKYLDEVSDLMSVVTGDSVHVNPKHQQP 292
Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI---ANRDASFAQKLETKYTL 653
Y F F N+ R + W+RR ++PF+ + Q L+ + L
Sbjct: 293 YEAVYKCFCLF-SGNELPKARAKNQGWYRRLCIVPFNADFNGQKEKPEIKNQYLKDERLL 351
Query: 654 EAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWI 697
E W L + P+ + E + D Y +++
Sbjct: 352 E---WVLYRILNLEKFD-KFIEPQAVKELLSEYKINNDFYFSFV 391
>gi|323179375|gb|EFZ64942.1| poxvirus D5 protein-like family protein [Escherichia coli 1180]
Length = 608
Score = 147 bits (371), Expect = 7e-33, Method: Composition-based stats.
Identities = 62/362 (17%), Positives = 125/362 (34%), Gaps = 38/362 (10%)
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSG 475
+++ +G +G+ D TG + K ++ ++ PF + F +
Sbjct: 236 NTARNLIGFSNGVFDTRTGNFREHNKNDWLLIASELPFSPPAEGETLATHAPNFWKWLRR 295
Query: 476 -YFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
E++ D + M L Q FI + G GGSGKS + + G ++A
Sbjct: 296 SVAENDRKADRVLAALFMVLANRYDWQLFIEVTGPGGSGKSVMAEICTMLAGKANTVSAS 355
Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
+ R ++G ++I+ + + A IK +TGGD + +
Sbjct: 356 MKALEDARER---------ALVVGFSLIILPDMTRYAG-DGAGIKAITGGDKVAIDPKHK 405
Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFD--KPIANRDASFAQKLETKYT 652
YS + + N + + RR ++ F P RD +K+E +
Sbjct: 406 APYSTRIPAVVLAV-NNSAMSFSDRSGGISRRRVIFNFSEVVPENERDPMLPEKIEGELA 464
Query: 653 LEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID--------DCCDIG 704
+ + + ++ L + + +A +R+G D+ + D +G
Sbjct: 465 VVIRHLLTRFADQDEARRLLYEQ-QKSEEALAIKREG-DSLVDFCGYLMSSVMCDGLLVG 522
Query: 705 ENL---WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWK 761
+ L +Y Y K ++ ++ G + RE ++K K
Sbjct: 523 NAEIIPFSPRRYLYHAYLSYMRAHG--FSKPVTLTRFGADMP--GAMAEYGREYMKKRTK 578
Query: 762 SK 763
Sbjct: 579 EG 580
>gi|260846581|ref|YP_003224359.1| putative DNA primase [Escherichia coli O103:H2 str. 12009]
gi|257761728|dbj|BAI33225.1| putative DNA primase [Escherichia coli O103:H2 str. 12009]
gi|326339871|gb|EGD63678.1| DNA primase , phage-associated [Escherichia coli O157:H7 str. 1125]
Length = 608
Score = 147 bits (371), Expect = 7e-33, Method: Composition-based stats.
Identities = 62/362 (17%), Positives = 125/362 (34%), Gaps = 38/362 (10%)
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSG 475
+++ +G +G+ D TG + K ++ ++ PF + F +
Sbjct: 236 NTARNLIGFSNGVFDTRTGNFREHNKNDWLLIASELPFSPPAEGETLATHAPNFWKWLRR 295
Query: 476 -YFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
E++ D + M L Q FI + G GGSGKS + + G ++A
Sbjct: 296 SVAENDRKADRVLAALFMVLANRYDWQLFIEVTGPGGSGKSVMAEICTMLAGKANTVSAS 355
Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
+ R ++G ++I+ + + A IK +TGGD + +
Sbjct: 356 MKALEDARER---------ALVVGFSLIILPDMTRYAG-DGAGIKAITGGDKVAIDPKHK 405
Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFD--KPIANRDASFAQKLETKYT 652
YS + + N + + RR ++ F P RD +K+E +
Sbjct: 406 APYSTRIPAVVLAV-NNSAMSFSDRSGGISRRRVIFNFSEVVPENERDPMLPEKIEGELA 464
Query: 653 LEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID--------DCCDIG 704
+ + + ++ L + + +A +R+G D+ + D +G
Sbjct: 465 VVIRHLLTRFADQDEARRLLYEQ-QKSEEALAIKREG-DSLVDFCGYLMSSVMCDGLLVG 522
Query: 705 ENL---WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWK 761
+ L +Y Y K ++ ++ G + RE ++K K
Sbjct: 523 NAEIIPFSPRRYLYHAYLSYMRAHG--FSKPVTLTRFGADMP--GAMAEYGREYMKKRTK 578
Query: 762 SK 763
Sbjct: 579 EG 580
>gi|222152411|ref|YP_002561586.1| phage replication protein [Streptococcus uberis 0140J]
gi|222113222|emb|CAR40712.1| putative phage replication protein [Streptococcus uberis 0140J]
Length = 479
Score = 147 bits (371), Expect = 7e-33, Method: Composition-based stats.
Identities = 44/282 (15%), Positives = 93/282 (32%), Gaps = 21/282 (7%)
Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE---FLDLVSGY----FES 479
++ ++G+ ++ T + + IT TPF + D +
Sbjct: 121 NYIPVKNGVYNILTQKLEPFDPKFIITSKIATPFNPDAKKPILNGWFDFDKWFDSLACND 180
Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539
EV+ + + A+ ++ + + G G +GK T L++ G + + N +
Sbjct: 181 SEVVTLLWQIMNEAINPNRTRKKMVILTGDGNNGKGTFQALLENLIGKENISNLKPDQFK 240
Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599
+ L G I + + + + + GD + T+ E
Sbjct: 241 EFYTNA----------LEGKTCNIGDDISNKYLDEVSDLMSIVSGDRIQVNRKGKETF-E 289
Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWF 659
+ N RN + W+RR ++PF+ K + +W
Sbjct: 290 ATYRLLCIFSGNDIPRARNKTNGWYRRLCIVPFNADFNGNKERPEIKDKFIRNKSLLEWI 349
Query: 660 LKGVKAYISKGLD-VDIPEVCLKAKEEERQGTDTYQAWIDDC 700
L K K D P+V K ++ ++ D ++ +
Sbjct: 350 L--FKILTMKDFDKFIEPKVVTKMLDQYKRDNDYILTFVTEF 389
>gi|312864227|ref|ZP_07724461.1| phage/plasmid primase, P4 family, C-terminal domain protein
[Streptococcus vestibularis F0396]
gi|311100228|gb|EFQ58437.1| phage/plasmid primase, P4 family, C-terminal domain protein
[Streptococcus vestibularis F0396]
Length = 507
Score = 147 bits (371), Expect = 8e-33, Method: Composition-based stats.
Identities = 43/278 (15%), Positives = 95/278 (34%), Gaps = 18/278 (6%)
Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ------EFLDLVSGY-FES 479
+ ++GI +L T + + IT T + +F + + G
Sbjct: 146 YLIPVRNGIFNLHTKELEPFIPKHIITTKIATAYNPEAQKPLLGGWFDFDEWLDGLACGD 205
Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539
+E+ + + A+ ++ + + G G +GK T L++ G + + N + +
Sbjct: 206 KEITTLLWQVMNEAINPNRTRKKMVVLTGDGNNGKGTFQALLENLIGKENISNLKPNQFQ 265
Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599
+ L L G I + ++ + + + + GD + + Y
Sbjct: 266 EQHL---------LSALNGKVCNIGDDISDKYLDSVSDLMSIVTGDTIQVNPKHLQPYEA 316
Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWF 659
S N RN W+RR ++PF+ K E + E +W
Sbjct: 317 S-YRLLCIFSGNGIPRSRNKSQGWYRRLCIVPFNADFNGTVERPEIKDEFIKSKELLEWV 375
Query: 660 LKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWI 697
L + +++ +E ++ D Y +++
Sbjct: 376 LFKILN-MAEFDRFIEANAVKDMLDEYKEDNDFYYSFV 412
>gi|329117177|ref|ZP_08245894.1| phage/plasmid primase, P4 family, C-terminal domain protein
[Streptococcus parauberis NCFD 2020]
gi|326907582|gb|EGE54496.1| phage/plasmid primase, P4 family, C-terminal domain protein
[Streptococcus parauberis NCFD 2020]
Length = 480
Score = 147 bits (371), Expect = 8e-33, Method: Composition-based stats.
Identities = 43/282 (15%), Positives = 91/282 (32%), Gaps = 20/282 (7%)
Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE---FLDLVSGY----FES 479
++ ++G+ +++ + IT TPF + D +
Sbjct: 121 YYIPVKNGVYNIKNQHLEPFDPKFIITSKITTPFNPEAKKPILGGWFDFDKWFESLACND 180
Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539
EV+ + + A+ ++ + + G G +GK T L++ G + + N +
Sbjct: 181 SEVVTLLWQIMNEAINPNRTRKKMVILTGDGNNGKGTFQALLENLIGKENISNLKPDHFT 240
Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599
+ + L G I + + + + + GD + T+ E
Sbjct: 241 KEFYTSS---------LEGKTCNIGDDISNKYLDEVSDLMSIVSGDRIQVNRKGKETF-E 290
Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWF 659
+ N RN + W+RR ++PF+ K + +W
Sbjct: 291 ATYRLLCIFSGNDIPRARNKTNGWYRRLCIVPFNADFNGNKERPEIKDKFIKNKTLLEWI 350
Query: 660 LKGVKAYISKGLD-VDIPEVCLKAKEEERQGTDTYQAWIDDC 700
L K K D P+ K E ++ D ++ +
Sbjct: 351 L--FKILTMKDFDKFIEPKAVTKMLNEYKRDNDYILTYVTEF 390
>gi|315221878|ref|ZP_07863790.1| phage/plasmid primase, P4 family protein [Streptococcus anginosus
F0211]
gi|315189111|gb|EFU22814.1| phage/plasmid primase, P4 family protein [Streptococcus anginosus
F0211]
Length = 513
Score = 147 bits (371), Expect = 8e-33, Method: Composition-based stats.
Identities = 44/284 (15%), Positives = 95/284 (33%), Gaps = 24/284 (8%)
Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGE------PSQEFLDLVSGY- 476
S + ++GI DL+ + + I T + + +F + +
Sbjct: 152 SDRNLIPVKNGIFDLKRKALLPFSPSYIIKSKINTAYHDKPMKPILDKWFDFDEWLKSIA 211
Query: 477 FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEAS 536
E+++ + + A+ + + G G +GK T +L+ G + + N + +
Sbjct: 212 CNDEDIVTLLWQIMNEAINPNYTRGKMAILYGEGNNGKGTFQSLLINLIGAKNISNLKPN 271
Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNT 596
+ + L L G I + + + + + GD + +
Sbjct: 272 QFEE---------SFQLSALEGKVCNIGDDISNKYLDEVSDLMSVVTGDSVHVNPKHQQP 322
Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI---ANRDASFAQKLETKYTL 653
Y F F N+ R + W+RR ++PF+ + Q L+ + L
Sbjct: 323 YEAVYKCFCLF-SGNELPKARAKNQGWYRRLCIVPFNADFNGQKEKPEIKNQYLKDERLL 381
Query: 654 EAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWI 697
E W L + P+ + E + D Y +++
Sbjct: 382 E---WVLYRILNLEKFD-KFIEPQAVKELLSEYKINNDFYFSFV 421
>gi|237739825|ref|ZP_04570306.1| DNA primase [Fusobacterium sp. 2_1_31]
gi|229423433|gb|EEO38480.1| DNA primase [Fusobacterium sp. 2_1_31]
Length = 685
Score = 147 bits (370), Expect = 8e-33, Method: Composition-based stats.
Identities = 62/424 (14%), Positives = 145/424 (34%), Gaps = 29/424 (6%)
Query: 338 KNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVE 397
N+ +++ K+ + + D ++ + + N + + D R +
Sbjct: 251 NNDSFLYHTNNGKLKVNTYKMAQKLINDFSIINIDNFLYSYNGQYYKKCEKEDIER-AIL 309
Query: 398 ENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTG 457
K + + E + +D ++ +G+ +L+T + +K+
Sbjct: 310 RLHKDITMNELKEVLKKIQLGADKKKEDLNYIALNNGVFNLDTRKLEPYSKDKITMVHMD 369
Query: 458 TPFVE------GEPSQEFLD--LVSGYFESEEVMDYFTRCVGMALLGG-NKAQRFIHIRG 508
+ + GEP+ + ++ + +G AL N Q+ + I+G
Sbjct: 370 IIYTDDVDIITGEPTGTIIKNYMLDLVQNDYNLFCVLCEFLGQALYRKENILQKCLIIKG 429
Query: 509 VGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN 568
+GKS + ++ FG + V + Q L ++G + I + +
Sbjct: 430 DKSNGKSKFLEILIKFFGTENVSTLDLKRFEQ---------RFDLFSIVGKMVNIGDDIS 480
Query: 569 ENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYI 628
+++ IK++ + + + + P N + A RR
Sbjct: 481 GQYIPDSSNIKKIITSEMLPIERKGQDLFDYKPR-IICIFSCNNLPRFDDSTKAVKRRLC 539
Query: 629 VIPFDKP----IANRDASFAQKLETKY-TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAK 683
++PF+ + N + ++ T E W + G+ + + ++
Sbjct: 540 ILPFENTYRPELNNINPFIVHEMTTPENLSELFSWSVWGLDRVLRN-HRLTESPKIMELV 598
Query: 684 EEERQGTDTYQAWIDDC---CDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTL 740
EE + D +A+I+D +IG + Y++Y+ N K ++
Sbjct: 599 EEFDKDNDPIRAFIEDMAGDTEIGLKGYFNMKDTGIIYTDYQIWCNNNGYKEMNASNFGK 658
Query: 741 NLKQ 744
LKQ
Sbjct: 659 QLKQ 662
>gi|268610077|ref|ZP_06143804.1| primase, putative [Ruminococcus flavefaciens FD-1]
Length = 467
Score = 147 bits (370), Expect = 8e-33, Method: Composition-based stats.
Identities = 65/384 (16%), Positives = 125/384 (32%), Gaps = 33/384 (8%)
Query: 402 AKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFV 461
+K Q ++A +++ + + + F+ Q+G LDL G + T +
Sbjct: 98 SKKVLQIMDALRLYTYS-EPIPPDMNFIHVQNGKLDL-NGNFYPHR--EFCTNRLNICYD 153
Query: 462 EGEP-----SQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKST 516
++FL + E+V +G L+ K Q+ + + G GG GKS
Sbjct: 154 PNIRKGAYYPEKFLTFLMELLTPEDVTT-LQEYLGYLLIPSTKGQKMMFLIGQGGEGKSR 212
Query: 517 LMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAA 576
+ +++ F + ++ L +++ + +
Sbjct: 213 IGIVLREIFMDN---------MLTGNVHRIENDRFFRYNLKDRLLMVDDDMQMQALSSTG 263
Query: 577 KIKQM-TGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV-RNPDDAWWRRYIVIPFDK 634
IK + T + G ++ N + + RR I++
Sbjct: 264 YIKNLVTAETPIDVEAK-GKQSEQALLYTRLLCFGNGSPKTLYDKSKGFSRRMIILT-TL 321
Query: 635 PIANR---DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTD 691
P + D A+K + W G+ ++ I + + E Q
Sbjct: 322 PPPEKRIIDPYIAEKFIAEKEK-IFCWMYDGLLRLLANNYRFTISDKARQNVMETMQDNC 380
Query: 692 TYQAWIDDCCDI--GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIG 749
+++D + GENL S +L SY + E + T L+Q
Sbjct: 381 NITEFLEDTDRVQYGENLRVASSALYDSYYHWCEDN---ALTALKRETFVSWLRQNEAAY 437
Query: 750 GIKRE-KIEKEWKSKRIIKGLKLK 772
IK + I R KG+ LK
Sbjct: 438 HIKYDLNIPSGSSHVRGFKGIALK 461
>gi|160939409|ref|ZP_02086759.1| hypothetical protein CLOBOL_04302 [Clostridium bolteae ATCC
BAA-613]
gi|158437619|gb|EDP15381.1| hypothetical protein CLOBOL_04302 [Clostridium bolteae ATCC
BAA-613]
Length = 459
Score = 147 bits (370), Expect = 9e-33, Method: Composition-based stats.
Identities = 54/363 (14%), Positives = 112/363 (30%), Gaps = 24/363 (6%)
Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ-EFLDLV 473
+ + + +G L L G K + + + P +L +
Sbjct: 83 LAALVEDFPPEPDRIHLSNGTLFL-DGTFAKGKPK-IVRNRFPVSYKPNAPKPVLWLQFL 140
Query: 474 SGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
G E + +G L+ NK QR + I+G GG GKS I G + N
Sbjct: 141 DGLLY-PEDIPTLQEYIGYCLIPSNKGQRMMVIKGSGGEGKSQ----IGAVLGTLFGFNM 195
Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM-TGGDCMTARLN 592
+ I + + + L + + + +K + T M
Sbjct: 196 KDGSI-----GKISENRFARADLEHILLCVDDDMRMEALRQTNYVKSIVTAQGKMDLERK 250
Query: 593 YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETK 650
+Y + + + D ++RR +V+ + A R D A+K++ +
Sbjct: 251 GKQSYQGWMCARLLAFSNGDLQALFDRSDGFYRRQLVLTTKEKPAGRVDDPDLAEKMKAE 310
Query: 651 YTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD--CCDIGENLW 708
W +G++ + + +E ++ + ++D +L
Sbjct: 311 -VEGILLWAFEGLQRLAANNFKFTESQRTKDNREAVKRDNNNVYDFLDSDGYVRRKADLS 369
Query: 709 EESHSLAKSYSEYREQELNYDRKRISTRTVTLNLK--QKGFIGGIKREKIEKEWKSKRII 766
S L ++Y Y + + R+ + L Q + + R
Sbjct: 370 ASSKELYEAYQIYCTENN---LPALKPRSFSEALIACQSRYNLEYCNNVTNAAGRRVRGF 426
Query: 767 KGL 769
G+
Sbjct: 427 LGI 429
>gi|125625017|ref|YP_001033500.1| putative DNA primase [Lactococcus lactis subsp. cremoris MG1363]
gi|124493825|emb|CAL98818.1| putative Dna Primase [Lactococcus lactis subsp. cremoris MG1363]
gi|300071817|gb|ADJ61217.1| putative DNA primase [Lactococcus lactis subsp. cremoris NZ9000]
Length = 542
Score = 147 bits (370), Expect = 9e-33, Method: Composition-based stats.
Identities = 56/354 (15%), Positives = 122/354 (34%), Gaps = 24/354 (6%)
Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFL-----DLVSGYF- 477
+ + + +GI + +T Q + T + T + + D ++
Sbjct: 175 AEAHLIPVANGIFNKKTQQLEPFSPSYVFTSTIATKYNAKAKAPNINGWNIDDWLNDLMS 234
Query: 478 ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
EE++ + + + G ++ + + G G GK T +LI G + V + +A
Sbjct: 235 GDEELVKLLWQVISASTNGNYSYRKGVWLVGKGNDGKGTFQSLIMNLIGRENVASVKAEQ 294
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
+ +L +++G +I ++ + NA + GD +
Sbjct: 295 FAE---------RFALSQVVGKTCIIGDDSQVSYLDNAGNYFSVVTGDPVPIEAKGKQPT 345
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKK 657
+ N RN + +RR +++PF+K + ++ K + + +
Sbjct: 346 LAV-FNKLVIQSTNFLPKFRNKSNGTYRRLLIVPFEKSFTADNDNWKIKDDYIKRKDVLE 404
Query: 658 WFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKS 717
+ LK A D P+ ++ + D A+++D D + + + L+
Sbjct: 405 YVLK--IALSLNFDKFDEPKATKGLLDDFKISNDNVLAFVNDIFDEFVSDFLPTTFLSAL 462
Query: 718 YSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771
Y + E E K + R L K K + S + + L
Sbjct: 463 YRAWCEDEG---IKPFTKREFENKLPD---HIKEKWIKTTQRPNSAGFNRAIDL 510
>gi|116512920|ref|YP_811827.1| phage DNA polymerase [Lactococcus lactis subsp. cremoris SK11]
gi|116108574|gb|ABJ73714.1| Phage DNA polymerase (ATPase domain) [Lactococcus lactis subsp.
cremoris SK11]
Length = 542
Score = 147 bits (370), Expect = 1e-32, Method: Composition-based stats.
Identities = 56/354 (15%), Positives = 122/354 (34%), Gaps = 24/354 (6%)
Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFL-----DLVSGYF- 477
+ + + +GI + +T Q + T + T + + D ++
Sbjct: 175 AEAHLIPVANGIFNKKTQQLEPFSPSYVFTSTIATKYNAKAKAPNINGWNIDDWLNDLMS 234
Query: 478 ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
EE++ + + + G ++ + + G G GK T +LI G + V + +A
Sbjct: 235 GDEELVKLLWQVISASTNGNYSYRKGVWLVGKGNDGKGTFQSLIMNLIGRENVASVKAEQ 294
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
+ +L +++G +I ++ + NA + GD +
Sbjct: 295 FAE---------RFALSQVVGKTCIIGDDSQVSYLDNAGNYFSVVTGDPVPIEAKGKQPT 345
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKK 657
+ N RN + +RR +++PF+K + ++ K + + +
Sbjct: 346 LAV-FNKLVIQSTNFLPKFRNKSNGTYRRLLIVPFEKSFTADNDNWKIKDDYIKRKDVLE 404
Query: 658 WFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKS 717
+ LK A D P+ ++ + D A+++D D + + + L+
Sbjct: 405 YVLK--IALSLNFDKFDEPKATKGLLDDFKISNDNVLAFVNDIFDEFVSDFLPTTFLSAL 462
Query: 718 YSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771
Y + E E K + R L K K + S + + L
Sbjct: 463 YRAWCEDEG---IKPFTKREFENKLPD---HIKEKWIKTTQRPNSAGFNRAIDL 510
>gi|13095886|ref|NP_076775.1| helicase [Lactococcus phage bIL310]
gi|15672011|ref|NP_266185.1| DNA primase [Lactococcus lactis subsp. lactis Il1403]
gi|12722868|gb|AAK04127.1|AE006242_6 prophage ps1 protein 05, DNA primase [Lactococcus lactis subsp.
lactis Il1403]
gi|12831075|gb|AAK08428.1|AF323671_24 helicase [Lactococcus phage bIL310]
gi|326405626|gb|ADZ62697.1| phage DNA primase [Lactococcus lactis subsp. lactis CV56]
Length = 542
Score = 146 bits (368), Expect = 1e-32, Method: Composition-based stats.
Identities = 51/345 (14%), Positives = 124/345 (35%), Gaps = 27/345 (7%)
Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLD------LVSGYFESE 480
+ +GI + +T Q + + T + T + + L+ +
Sbjct: 178 HLIPVANGIFNKKTQQLEPFSPKYVFTSTIATKYNDKAKVPNINGWNVDGWLLDLMSGDK 237
Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540
E++ + + + G ++ + + G G GK T +LI G + V + +A +
Sbjct: 238 ELVSLLWQIISASTNGNYSYRKGVWLVGKGNDGKGTFQSLIMNLIGRENVASVKAEQFAE 297
Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600
+L +++G +I ++ + NA + GD + +
Sbjct: 298 ---------RFALSQVVGKTCIIGDDSQVSYLDNAGNYFSVVTGDPVPIEAKGKQP---T 345
Query: 601 PASF-TPFI-VPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKW 658
A F I N RN + +RR +++PF+K + + K + + ++
Sbjct: 346 LAVFNKLVIQSTNFLPKFRNKSNGTYRRLLIVPFEKSFTADNDDWKIKDDYIKRKDVLEY 405
Query: 659 FLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSY 718
LK + + D P+ ++ + D A+++D + + + + ++ Y
Sbjct: 406 VLKIALSLNFE--KFDEPKATQGLLDDFKISNDNVLAFVNDMFEEFVSDFLPTAFISALY 463
Query: 719 SEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSK 763
+ E E K + R L ++ ++ +++ +
Sbjct: 464 RAWCEDEG---VKPFTKREFENKLPD--YVKDQWKKTVQRPNSAG 503
>gi|45443313|ref|NP_994852.1| putative primase [Yersinia pestis biovar Microtus str. 91001]
gi|108806389|ref|YP_650305.1| putative primase [Yersinia pestis Antiqua]
gi|108813239|ref|YP_649006.1| primase [Yersinia pestis Nepal516]
gi|145597941|ref|YP_001162017.1| primase [Yersinia pestis Pestoides F]
gi|150260107|ref|ZP_01916835.1| putative primase [Yersinia pestis CA88-4125]
gi|162420203|ref|YP_001608164.1| D5 family nucleoside triphosphatase [Yersinia pestis Angola]
gi|165925009|ref|ZP_02220841.1| nucleoside triphosphatase, D5 family [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165937310|ref|ZP_02225874.1| nucleoside triphosphatase, D5 family [Yersinia pestis biovar
Orientalis str. IP275]
gi|166010215|ref|ZP_02231113.1| nucleoside triphosphatase, D5 family [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166212650|ref|ZP_02238685.1| nucleoside triphosphatase, D5 family [Yersinia pestis biovar
Antiqua str. B42003004]
gi|167399750|ref|ZP_02305268.1| nucleoside triphosphatase, D5 family [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167418869|ref|ZP_02310622.1| nucleoside triphosphatase, D5 family [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167425328|ref|ZP_02317081.1| nucleoside triphosphatase, D5 family [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|167467327|ref|ZP_02332031.1| nucleoside triphosphatase, D5 family protein [Yersinia pestis FV-1]
gi|218928055|ref|YP_002345930.1| putative primase [Yersinia pestis CO92]
gi|229837566|ref|ZP_04457728.1| putative primase [Yersinia pestis Pestoides A]
gi|229840789|ref|ZP_04460948.1| putative primase [Yersinia pestis biovar Orientalis str. PEXU2]
gi|229842652|ref|ZP_04462807.1| putative primase [Yersinia pestis biovar Orientalis str. India 195]
gi|229903695|ref|ZP_04518808.1| putative primase [Yersinia pestis Nepal516]
gi|270487473|ref|ZP_06204547.1| nucleoside triphosphatase, D5 family [Yersinia pestis KIM D27]
gi|294502949|ref|YP_003567011.1| putative primase [Yersinia pestis Z176003]
gi|45438181|gb|AAS63729.1| putative primase [Yersinia pestis biovar Microtus str. 91001]
gi|108776887|gb|ABG19406.1| plasmid and phage DNA primase [Yersinia pestis Nepal516]
gi|108778302|gb|ABG12360.1| plasmid and phage DNA primase [Yersinia pestis Antiqua]
gi|115346666|emb|CAL19549.1| putative primase [Yersinia pestis CO92]
gi|145209637|gb|ABP39044.1| plasmid and phage DNA primase [Yersinia pestis Pestoides F]
gi|149289515|gb|EDM39592.1| putative primase [Yersinia pestis CA88-4125]
gi|162353018|gb|ABX86966.1| nucleoside triphosphatase, D5 family [Yersinia pestis Angola]
gi|165914784|gb|EDR33397.1| nucleoside triphosphatase, D5 family [Yersinia pestis biovar
Orientalis str. IP275]
gi|165923209|gb|EDR40360.1| nucleoside triphosphatase, D5 family [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165990701|gb|EDR43002.1| nucleoside triphosphatase, D5 family [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166205942|gb|EDR50422.1| nucleoside triphosphatase, D5 family [Yersinia pestis biovar
Antiqua str. B42003004]
gi|166962863|gb|EDR58884.1| nucleoside triphosphatase, D5 family [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167050458|gb|EDR61866.1| nucleoside triphosphatase, D5 family [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167055728|gb|EDR65512.1| nucleoside triphosphatase, D5 family [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|229679465|gb|EEO75568.1| putative primase [Yersinia pestis Nepal516]
gi|229690962|gb|EEO83016.1| putative primase [Yersinia pestis biovar Orientalis str. India 195]
gi|229697155|gb|EEO87202.1| putative primase [Yersinia pestis biovar Orientalis str. PEXU2]
gi|229704254|gb|EEO91265.1| putative primase [Yersinia pestis Pestoides A]
gi|262360984|gb|ACY57705.1| putative primase [Yersinia pestis D106004]
gi|262364924|gb|ACY61481.1| putative primase [Yersinia pestis D182038]
gi|270335977|gb|EFA46754.1| nucleoside triphosphatase, D5 family [Yersinia pestis KIM D27]
gi|294353408|gb|ADE63749.1| putative primase [Yersinia pestis Z176003]
gi|320014044|gb|ADV97615.1| putative primase [Yersinia pestis biovar Medievalis str. Harbin 35]
Length = 763
Score = 146 bits (367), Expect = 2e-32, Method: Composition-based stats.
Identities = 61/377 (16%), Positives = 125/377 (33%), Gaps = 43/377 (11%)
Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
+G Q+G+ DL+ Q ++ F E +P + F ++
Sbjct: 392 RHLIGFQNGVYDLKAKQFRPHRANDWLQHHNDIIFTEPQPDENLAHHAPHFTKWLAHAAN 451
Query: 479 SE-EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
E M + M L Q F+ + G GGSGKS + G Q + +
Sbjct: 452 DELPKMARIKAALFMILSNRFDWQLFLEVTGEGGSGKSVFTYIATLLAGRQNTASGNMAA 511
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
+ Q R + +G ++ + + + A IK +TGGD + Y +
Sbjct: 512 LDQARGR---------AQFVGKSLITLPDQVKYVG-EGAGIKAITGGDLVEIDGKYEKQF 561
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEA 655
S + + N+ + RR ++ F+ P+ A++D +K+ + +
Sbjct: 562 S-TLLTAVVLATNNEPMSFTERQGGIARRRVIFAFNHPVKEADKDPLIGEKIAAELPVVI 620
Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENL-------- 707
+ + K + + + + ++ D + ++GE +
Sbjct: 621 RCLLAEFAD--QDKARKLLLEQRDSREAMGVKRDADPLYGFCAHIVELGEAVGMYMGTLA 678
Query: 708 ---WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKR 764
L +Y Y E + ++ +S K F ++ E+K R
Sbjct: 679 ISPHAPRIYLYHAYLAYMEAYGH--QRSLSLTKFG-----KDFPKVMEE--FGAEYKKAR 729
Query: 765 IIKGLKLKPAFESVDDN 781
KG + ++
Sbjct: 730 TDKGFRYNMDLSDTAND 746
>gi|22127140|ref|NP_670563.1| phage DNA primase [Yersinia pestis KIM 10]
gi|21960200|gb|AAM86814.1|AE013927_12 putative phage DNA primase [Yersinia pestis KIM 10]
Length = 697
Score = 146 bits (367), Expect = 2e-32, Method: Composition-based stats.
Identities = 61/377 (16%), Positives = 125/377 (33%), Gaps = 43/377 (11%)
Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
+G Q+G+ DL+ Q ++ F E +P + F ++
Sbjct: 326 RHLIGFQNGVYDLKAKQFRPHRANDWLQHHNDIIFTEPQPDENLAHHAPHFTKWLAHAAN 385
Query: 479 SE-EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
E M + M L Q F+ + G GGSGKS + G Q + +
Sbjct: 386 DELPKMARIKAALFMILSNRFDWQLFLEVTGEGGSGKSVFTYIATLLAGRQNTASGNMAA 445
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
+ Q R + +G ++ + + + A IK +TGGD + Y +
Sbjct: 446 LDQARGR---------AQFVGKSLITLPDQVKYVG-EGAGIKAITGGDLVEIDGKYEKQF 495
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEA 655
S + + N+ + RR ++ F+ P+ A++D +K+ + +
Sbjct: 496 S-TLLTAVVLATNNEPMSFTERQGGIARRRVIFAFNHPVKEADKDPLIGEKIAAELPVVI 554
Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENL-------- 707
+ + K + + + + ++ D + ++GE +
Sbjct: 555 RCLLAEFAD--QDKARKLLLEQRDSREAMGVKRDADPLYGFCAHIVELGEAVGMYMGTLA 612
Query: 708 ---WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKR 764
L +Y Y E + ++ +S K F ++ E+K R
Sbjct: 613 ISPHAPRIYLYHAYLAYMEAYGH--QRSLSLTKFG-----KDFPKVMEE--FGAEYKKAR 663
Query: 765 IIKGLKLKPAFESVDDN 781
KG + ++
Sbjct: 664 TDKGFRYNMDLSDTAND 680
>gi|313885599|ref|ZP_07819349.1| phage/plasmid primase, P4 family, C-terminal domain protein
[Eremococcus coleocola ACS-139-V-Col8]
gi|312619329|gb|EFR30768.1| phage/plasmid primase, P4 family, C-terminal domain protein
[Eremococcus coleocola ACS-139-V-Col8]
Length = 701
Score = 146 bits (367), Expect = 2e-32, Method: Composition-based stats.
Identities = 53/332 (15%), Positives = 107/332 (32%), Gaps = 21/332 (6%)
Query: 419 SDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE 478
S+ + + +G ++ G+ VK + + + S++ D ++
Sbjct: 368 SEEFEGDIDSIQLANG-FQVKGGKIVKGAVDNFTPYLLDVDYNPNAYSKDVDDFLNFLVM 426
Query: 479 S-EEVMDYFTRCVGMALLGGNKAQRFIHIRG-VGGSGKSTLMNLIKYAFGNQYVINAEAS 536
E+ +G +L G G +GKST + ++ G+ N
Sbjct: 427 DRPELRVTVEELLGHIILLKGFPHSVFFFVGRSGANGKSTFLEMLNEWVGDM-GSNISLD 485
Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNT 596
S+ L + I + + + +A K + G+ + R Y
Sbjct: 486 AFSD---------PTSIGELEDKIVNIGDDIDASYLDKSANFKALASGNTIMIRPIYQTP 536
Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLE-A 655
+ T N+ ++ RR +++P D + D KL TK
Sbjct: 537 -RRLKNTATLLFTANEMPTFKDKTGGIARRLVIVPCDNVVKKADFDLVSKLTTKEAKSYL 595
Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLA 715
LKGVK G + V ++ + +D+ ++D+ G + +
Sbjct: 596 LNLALKGVKNIAHNGGKITDNGVVNSMVQDYLEKSDSVAMYVDE---EGITPNLDKKLVY 652
Query: 716 KSYSEYREQELNYDRKRISTRTVTLNLKQKGF 747
+ Y + Y K + T L G+
Sbjct: 653 QDYLNFCSA---YGMKPQKVTSFTQKLIDLGY 681
>gi|153213459|ref|ZP_01948770.1| integrase [Vibrio cholerae 1587]
gi|124115923|gb|EAY34743.1| integrase [Vibrio cholerae 1587]
Length = 792
Score = 145 bits (366), Expect = 2e-32, Method: Composition-based stats.
Identities = 110/682 (16%), Positives = 212/682 (31%), Gaps = 114/682 (16%)
Query: 13 AIHNGFKLIPLRLGDKR-----PQRLG-KWEEQLLSSEKIDKLPACG-------FGFVCG 59
I G+ ++PL P +G + + S ++ G G CG
Sbjct: 35 YIEVGYYVLPLDPKKGEGKSLPPSSMGVSYAQAAKSRRAVESWFGLGGKFRGYNIGLACG 94
Query: 60 VGEQPLYAFDIDSKDEKTANTFKDTFE---ILHGTPIVRIGQKPKILIPFRMNKEGIKKK 116
++A D+D +D+K F P +I + + K
Sbjct: 95 -KNGGIFAIDVDVEDKKGNKGFLALDMLEQEFGKLPETQIQRTASGGTHYIFQWTQGAKT 153
Query: 117 KTTESTQGHLDILG-----CGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVE 171
+ + + +D G C + VAY + + P
Sbjct: 154 SSGKIAKA-IDTRGGDEHSCRSHIVAYPSRVRNGGY---EMVATTVAPAEIPSW------ 203
Query: 172 YLFKFFQEITVPLVKDKKSIIPSKTWTNNNNR-QYTNREITAFLSCFGEEFYNGSHDEWI 230
+ + P KK S+ T+++ +YT R++ L + +DEW+
Sbjct: 204 ----VLEALAKPDRSSKKQSRGSEEITDDDIENKYTPRQLWKMLDFINPD--ELEYDEWL 257
Query: 231 PVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFE---EIGDTAK--KRS 285
+ A+H + +KG E+A RWS++GS Y+ + +W FD +G KR
Sbjct: 258 MCLQAIHSQYPD-AKGFELADRWSQRGSRYEPNEVSIRWGAFDDSGEVRVGTLIYFAKRG 316
Query: 286 TFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWS 345
F G P S+ YN+ + G +T + D +
Sbjct: 317 GFNPKTEPKGADAPSQDAEDIVSE-YNEKYAIVLHGGKLRVMVETPS----DNPFKEPYE 371
Query: 346 LTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKST 405
L +F+ + DV L+ + N K + + W ++ +R
Sbjct: 372 LITKG------DFISLTEHDVVFLA-DANGNPKRVQKSKIWRDSSEKRIY---------- 414
Query: 406 AQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP 465
+ L G + +P K +
Sbjct: 415 ------EGGLVFEPGKGRTVGNALNMWRGW-------QYQPIKGDWSL------------ 449
Query: 466 SQEFLDLVSGYFESEEVM-DYFTRCVGMALL-GGNKAQRFIHIRGVGGSGKSTLMNLIKY 523
F + E ++ + A+ N + ++GV G+GK T+ N+
Sbjct: 450 ---FKQHILKVCGGNEKHYNWMLDWMADAIQDPMNPKGCAVILKGVEGAGKGTIFNIFGE 506
Query: 524 AFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN-ENDEINAAKIKQMT 582
FG Y + ++ L + +V E + A +K +T
Sbjct: 507 LFGRYYKHIVQEDQLVGKFN----------AHLQEALLVFADEVTYGGSKKVAGVLKGIT 556
Query: 583 GGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD-- 640
+ + I N+ F+ + RR+ ++ +A++D
Sbjct: 557 TEKSLMVERKGLDAVRYRNCM-RLGIASNESWFIPAGPQS--RRWFILEVPSDVASKDDY 613
Query: 641 -ASFAQKLETKYTLEAKKWFLK 661
+++E + EA + L+
Sbjct: 614 FTPLYRQMEKEGGYEAMMYELQ 635
>gi|325662741|ref|ZP_08151335.1| hypothetical protein HMPREF0490_02075 [Lachnospiraceae bacterium
4_1_37FAA]
gi|325470978|gb|EGC74206.1| hypothetical protein HMPREF0490_02075 [Lachnospiraceae bacterium
4_1_37FAA]
Length = 434
Score = 145 bits (365), Expect = 4e-32, Method: Composition-based stats.
Identities = 65/382 (17%), Positives = 133/382 (34%), Gaps = 26/382 (6%)
Query: 396 VEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKS 455
V +K Q LE + + + + L + ++G L +G + + +
Sbjct: 61 VLTKGISKKVKQLLEVLKLEAYS-EELPVQMDRIHVKNGTYFL-SGSFTEM--KEFCLNR 116
Query: 456 TGTPFVEGEPSQE-FLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGK 514
+ E E +L +S E ++ + +G L+ NKAQ+ + I G GG GK
Sbjct: 117 LPVNYEMKEAKPERWLKFLSELLEEDD-IPTLQEYMGYCLIPSNKAQKLLIILGKGGEGK 175
Query: 515 STLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEIN 574
S + +++ G ++ + + L +++ + +
Sbjct: 176 SRIGLVMRKILGTNMNVS---------NIQKVEHNRFARADLEYRLLMVDDDMKLEALKD 226
Query: 575 AAKIKQM-TGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFD 633
IK + T D M + + + + ++RR I++
Sbjct: 227 TNYIKTIVTLEDKMDLERKSKQSVQGNLYVRFLCFGNGSLSALHDRSYGFYRRQIILTVK 286
Query: 634 KPIANR--DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTD 691
A+R D +KL+ + W L G+K + I E K E + +
Sbjct: 287 DVPADRVDDPYLIEKLQREADD-IFLWCLHGLKRLLKNEYRFTISERAKKNLHEAMESGN 345
Query: 692 TYQAWIDD--CCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLK--QKGF 747
A++ + EN S +L ++Y + E K +S ++ + LK +K +
Sbjct: 346 NIIAFMQSAGYIRLEENTTATSKNLYQAYCRWCEDNTE---KPMSAKSFSGYLKENEKKY 402
Query: 748 IGGIKREKIEKEWKSKRIIKGL 769
K+ R +G+
Sbjct: 403 HIHYSTNIPSDNGKNARGFQGI 424
>gi|74311430|ref|YP_309849.1| bacteriophage P4 DNA primase [Shigella sonnei Ss046]
gi|73854907|gb|AAZ87614.1| bacteriophage P4 DNA primase [Shigella sonnei Ss046]
Length = 495
Score = 144 bits (364), Expect = 4e-32, Method: Composition-based stats.
Identities = 47/243 (19%), Positives = 88/243 (36%), Gaps = 21/243 (8%)
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSG 475
+++ +G +G+ D TG + K ++ ++ PF + F +
Sbjct: 233 NTARNLIGFSNGVFDTRTGNFREHNKNDWLLIASELPFSPPAEGETLATHAPNFWKWLRR 292
Query: 476 -YFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
E++ D + M L Q FI + G GGSGKS + + G ++A
Sbjct: 293 SVAENDRKADRVLAVLFMVLANRYDWQLFIEVTGPGGSGKSVMAEICTMLAGKANTVSAS 352
Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
+ R ++G ++I+ + + A IK +TGGD + +
Sbjct: 353 MKALEDARER---------ALVVGFSLIIMPDMTRYAG-DGAGIKAITGGDKVAIDPKHK 402
Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFD--KPIANRDASFAQKLETKYT 652
YS + + N + RR ++ F P RD A+K+E +
Sbjct: 403 APYSTRIPAVVLAVNNNAM-SFSDRSGGISRRRVIFNFSEVVPENERDPMLAEKIEGELA 461
Query: 653 LEA 655
+
Sbjct: 462 VVI 464
>gi|238027975|ref|YP_002912206.1| phage/plasmid primase P4, C-terminal [Burkholderia glumae BGR1]
gi|237877169|gb|ACR29502.1| Phage/plasmid primase P4, C-terminal [Burkholderia glumae BGR1]
Length = 519
Score = 144 bits (363), Expect = 5e-32, Method: Composition-based stats.
Identities = 68/406 (16%), Positives = 128/406 (31%), Gaps = 50/406 (12%)
Query: 369 LSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGS-IFSITSDLLDSSSR 427
E D + R + + + + TA + AG + S+
Sbjct: 53 FWEAQRDVALEQDALRQLQKLEPAKYSASKARSMVETAITRLAGHKPLPVPQK---STGV 109
Query: 428 FLGEQDGILD-LETGQKVKPTKELYITKSTGTP---------------FVEGEPSQEFLD 471
+ +DG+L+ L +G + + + P F
Sbjct: 110 LVPLRDGLLEVLPSGVVKAHKPAPHFGVTHAINASIDWTRVGAEGTYGLLPMTPDSRFGR 169
Query: 472 LVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVI 531
+ S + DY C G L N Q+ I + G G +GKS + ++
Sbjct: 170 FIMQVQPSPAMRDYLAECFGSTLSTMN-VQKAIILEGTGANGKSLCLQILS-------AF 221
Query: 532 NAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISE-TNENDEINAAKIKQMTGGDCMTAR 590
+A +R P L+ + +V +SE IN K D ++
Sbjct: 222 HANPVAFDLSRLDGEFNTEP----LVHATLVTVSEAPPRKRPINENLFKAWVARDPVSVN 277
Query: 591 LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLE 648
+ P + + + N+ + + + RR +PF + I ++ + +
Sbjct: 278 RKNRVPLTVKPRA-SWVLAMNEAMGFSDMSHGFLRRIANVPFTQTIRAEDQIPDLDRLIT 336
Query: 649 TK--YTLEAKKWFLKGVKAYISKGLDVD---IPEVCLKAKEEERQGTDTYQAWIDDCCDI 703
A W L G+ A +G + +PE K R+ DT W D D
Sbjct: 337 ENPDEMAIALDWLLAGLIALTKRGRFMSEDELPEEVRSHKVSLRKSNDTALEW-ADVVDA 395
Query: 704 G-----ENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQ 744
G N W + + ++Y ++ R + L++
Sbjct: 396 GQDPAYPNQWADKVVVYRAYRDFCADNG---RHPVEANEFWKRLRR 438
>gi|125622911|ref|YP_001031394.1| putative DNA primase [Lactococcus lactis subsp. cremoris MG1363]
gi|124491719|emb|CAL96638.1| Putative DNA primase [Lactococcus lactis subsp. cremoris MG1363]
gi|300069649|gb|ADJ59049.1| putative DNA primase [Lactococcus lactis subsp. cremoris NZ9000]
Length = 542
Score = 144 bits (363), Expect = 6e-32, Method: Composition-based stats.
Identities = 51/345 (14%), Positives = 121/345 (35%), Gaps = 27/345 (7%)
Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLD------LVSGYFESE 480
+ +GI + +T Q + + T + T + + L+ +
Sbjct: 178 HLIPVANGIFNKKTQQLEPFSPKYVFTSTIATKYNDKAKVPNINGWNVDGWLLDLMSGDK 237
Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540
E++ + + + G ++ + G G GK T +LI G + V + +A +
Sbjct: 238 ELVSLLWQIISASTNGNYSYRKGAWLVGKGNDGKGTFQSLIMNLIGRENVASVKAEQFAE 297
Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600
L +++G +I ++ + NA + GD + +
Sbjct: 298 ---------RFVLSQVVGKTCIIGDDSQVSYLDNAGNYFSVVTGDPVPIEAKGKQP---T 345
Query: 601 PASF-TPFI-VPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKW 658
A F I N RN + +RR +++PF+K + + K + + ++
Sbjct: 346 LAVFNKLVIQSTNFLPKFRNKSNGTYRRLLIVPFEKSFTADNDDWKIKDDYIKRTDVLEY 405
Query: 659 FLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSY 718
LK A + P+ ++ + D A+++D + + + + ++ Y
Sbjct: 406 VLK--IALSLNFDKFNEPKATQGLLDDFKISNDNVLAFVNDMFEEFVSDFLPTAFISALY 463
Query: 719 SEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSK 763
+ E E K + R L ++ ++ +++ +
Sbjct: 464 RAWCEDEG---VKPFTKREFENKLPD--YVKDQWKKTVQRPNSAG 503
>gi|227358324|ref|ZP_03842665.1| primase [Proteus mirabilis ATCC 29906]
gi|227161660|gb|EEI46697.1| primase [Proteus mirabilis ATCC 29906]
Length = 775
Score = 144 bits (363), Expect = 6e-32, Method: Composition-based stats.
Identities = 60/371 (16%), Positives = 121/371 (32%), Gaps = 52/371 (14%)
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSG 475
+ +G +G+ DL T Q E ++ G F E + F +S
Sbjct: 407 EQKRELIGFSNGVYDLSTQQFKPHAPENWLLNHNGIVFTAPESNENLKQHAPSFYKWLSH 466
Query: 476 YFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
EE M+ + M L Q FI + G GGSGKS ++ G +
Sbjct: 467 SAGNDEEKMNRINAGLFMILANRYDWQLFIEVTGEGGSGKSVFTSIATLLAGAHNTASGN 526
Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
+ + R + +G ++ + + + A IK +TGGD + Y
Sbjct: 527 MKALDEARGR---------YQFVGKSLITLPDQVKYVG-EGAGIKAITGGDLIEVDGKYE 576
Query: 595 NTYSESPASFTPFIVPNKHL-FVRNPDDAWWRRYIVIPFDKPIAN--RDASFAQKLETKY 651
+S + + N + RR ++ F+ P+ +D +K+ +
Sbjct: 577 KQFSTIIKA--VVLATNNEPMSFTERNGGIARRRVIFSFNTPVKENDKDPLLPEKISKEL 634
Query: 652 TLEAKKW-----FLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGEN 706
+ + K + + D + +D ++ +GE
Sbjct: 635 PVIIRHLLKLFTCQDKAKLLLQEQRDSGEALAV-------KSNSDPLYSFCAYLVSLGEE 687
Query: 707 LWEESHS-----------LAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755
L + + L +Y + E + ++ +L + + +K
Sbjct: 688 LGMKMGNKNIYPRAPRIYLYHAYLSFMEAYG--FDRPLTLTKFGDSLPK----VMQEYKK 741
Query: 756 IEKEWKSKRII 766
+++K+KR
Sbjct: 742 DYRKFKTKRGY 752
>gi|71900789|ref|ZP_00682909.1| phage-related protein [Xylella fastidiosa Ann-1]
gi|71729466|gb|EAO31577.1| phage-related protein [Xylella fastidiosa Ann-1]
Length = 557
Score = 144 bits (363), Expect = 6e-32, Method: Composition-based stats.
Identities = 37/199 (18%), Positives = 68/199 (34%), Gaps = 19/199 (9%)
Query: 308 SDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNN----VYIWSLTLDKITASIMNFLVSMK 363
+D N + + + +AD W+ + + + L K++ I + +
Sbjct: 367 TDTANAVRIAKHYGKRLMVSAD--RWFVWEGTHWAHGMDAARLLALKLSKIIRGEVEQWR 424
Query: 364 EDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLD 423
D +E N K + + W R VE A A S+ + ++ LD
Sbjct: 425 TKRADTEKEKSKNAKIAAALEAWGKKSEMRSTVE--------AAMALAKSMLVVKAERLD 476
Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFES---- 479
+ L +G +DL TG E YIT+ F + EF+ ++
Sbjct: 477 TDPWLLNCANGTVDLRTGTLKAHRPEDYITRVVPINFDPKATAPEFITTLARITCEYGES 536
Query: 480 -EEVMDYFTRCVGMALLGG 497
+ + + R G G
Sbjct: 537 FKPLCAFLQRWFGYCATGS 555
>gi|319647186|ref|ZP_08001409.1| hypothetical protein HMPREF1012_02448 [Bacillus sp. BT1B_CT2]
gi|317390745|gb|EFV71549.1| hypothetical protein HMPREF1012_02448 [Bacillus sp. BT1B_CT2]
Length = 167
Score = 144 bits (363), Expect = 6e-32, Method: Composition-based stats.
Identities = 34/160 (21%), Positives = 58/160 (36%), Gaps = 15/160 (9%)
Query: 629 VIPFDKPIANR--DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEE 686
+IPF I D QKL + +W ++G + +GL PE KA E
Sbjct: 1 MIPFTVTIPKEKVDKKLPQKLAAE-MPGILRWAVEGCLKWQKEGLG--EPEAIKKATEGY 57
Query: 687 RQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746
R+ D ++++ C E+ L K Y ++ D + R L+ +G
Sbjct: 58 REDMDILGPFMEERCIQHPKAKVEAKELYKDYKDWC---FENDEIELKNRAFYRQLEIRG 114
Query: 747 FIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDNSNIID 786
F K + +K G+ L + N++
Sbjct: 115 F-------KKYRGNYNKNYFDGIGLIKENRDLHKQLNLLK 147
>gi|300724899|ref|YP_003714224.1| putative phage primase [Xenorhabdus nematophila ATCC 19061]
gi|297631441|emb|CBJ92138.1| putative phage primase [Xenorhabdus nematophila ATCC 19061]
Length = 804
Score = 144 bits (362), Expect = 8e-32, Method: Composition-based stats.
Identities = 52/342 (15%), Positives = 110/342 (32%), Gaps = 38/342 (11%)
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF----- 477
+ S +G +G+ L T Q E ++ G F + + D ++
Sbjct: 436 EQRSDLIGFSNGVYALSTQQFTPHQPEHWLMNHNGIEFTQPAIGENLSDHAPDFYRWLSH 495
Query: 478 ---ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
++E M+ + M L Q FI + G GGSGKS + G +
Sbjct: 496 AAGQNENKMNRIKAALFMILANRYDWQLFIEVTGEGGSGKSVFTYIATLLAGEHNTASGN 555
Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
+ + R + +G ++ + + + A IK +TGGD + Y
Sbjct: 556 MRALDEARGR---------YQFVGKSLITLPDQVKYVG-EGAGIKAITGGDLIEVDGKYE 605
Query: 595 NTYSESPASFTPFIVPNKHL-FVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKY 651
+S + + N + RR ++ PF+ P+ +D +K+ +
Sbjct: 606 KQFSTIIKA--VVLATNNEPMSFTERNGGIARRRVIFPFNIPVKESEKDPQLPEKISREL 663
Query: 652 TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWI------DDCC---- 701
+ + + +K L + + G+D + +D
Sbjct: 664 PVIIRHLLTEFADQNKAKKLLQAQRDSSEALT--VKCGSDPLYRFCGYLVSGEDTAGMKM 721
Query: 702 -DIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNL 742
+ + L +Y + E + ++ ++
Sbjct: 722 GNKNISPRAPRMYLYHAYLSFMEAYG--FERPLTLTKFGESM 761
>gi|168009191|ref|XP_001757289.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162691412|gb|EDQ77774.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 384
Score = 143 bits (361), Expect = 1e-31, Method: Composition-based stats.
Identities = 64/381 (16%), Positives = 121/381 (31%), Gaps = 80/381 (20%)
Query: 355 IMNFLVSMKEDVFDLSEE-PEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGS 413
+ L M + D+ E E +K F ++D RR+ + +
Sbjct: 2 MKEILTGMYRFITDVCESYMETIEPATKIMDFIQSSDNRRKMMYTCAGMLYKEGF----- 56
Query: 414 IFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLV 473
+LLDS +G + G+ D + + + YIT ST PF+ + + E + V
Sbjct: 57 -----EELLDSRRDVIGMKGGVYDFTKDKFRRMEPDDYITLSTRIPFIPLDYNSEVTNEV 111
Query: 474 SGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
++L+ F
Sbjct: 112 --------------------------------------------LDLLAKVF-------- 119
Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593
DI + + P L L G I + E +E D++N +K++TG D + R Y
Sbjct: 120 PNEDIRRYFIRFISSSTPELAMLKGRLIAFVQEPDEGDKLNLGVMKELTGNDSLYIRGLY 179
Query: 594 GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN-------------RD 640
+ + ++ N+ + D A W R V+PF + +D
Sbjct: 180 EEG-TIILQTTKFVLIANRIPQMSMFDKAVWSRVRVMPFVSMFVDKIESSHDSLTTHLKD 238
Query: 641 ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDC 700
+F+ K+ + ++ K Y++ GL+ E D + ++
Sbjct: 239 INFSNKIPL-LAPVFMRLVIEEYKQYLTYGLEESN--EVKDCTETICVSNDIFGQFLSAN 295
Query: 701 CDIGENLWEESHSLAKSYSEY 721
+ L +Y +
Sbjct: 296 VEKNSKSIVAIKELYDTYKYW 316
>gi|325680110|ref|ZP_08159676.1| phage/plasmid primase, P4 family, C-terminal domain protein
[Ruminococcus albus 8]
gi|324108185|gb|EGC02435.1| phage/plasmid primase, P4 family, C-terminal domain protein
[Ruminococcus albus 8]
Length = 460
Score = 143 bits (361), Expect = 1e-31, Method: Composition-based stats.
Identities = 65/384 (16%), Positives = 125/384 (32%), Gaps = 33/384 (8%)
Query: 402 AKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFV 461
+K Q ++A +++ ++ L+ F+ Q+G LDL G ++ + +
Sbjct: 91 SKKVVQIMDALRLYTYSAP-LNPDLNFIHVQNGKLDL-NGNFYP--RKEFCQNRLNICYD 146
Query: 462 EGEP-----SQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKST 516
+ FL + E+V +G L+ K Q+ + + G GG GKS
Sbjct: 147 PNIRNGAYYPERFLTFLMELLTPEDVTT-LQEYLGYLLIPSTKGQKMMFLIGQGGEGKSR 205
Query: 517 LMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAA 576
+ +++ F + ++ L +++ + +
Sbjct: 206 IGIVLREIFMDN---------MLTGNVHRIENDRFFRYNLKDRLLMVDDDMQMQALSSTG 256
Query: 577 KIKQM-TGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV-RNPDDAWWRRYIVIPFDK 634
IK + T + G ++ N + + RR I++
Sbjct: 257 YIKNLVTAETPIDVEAK-GKQSEQALLYTRLLCFGNGSPKTLYDKSKGFSRRMIILT-TL 314
Query: 635 PIANR---DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTD 691
P R D A+K + W G+ ++ I + + E Q
Sbjct: 315 PPPERRIIDPYIAEKFIAEKEK-IFCWMYDGLLRLLANNYRFTISDRARQNVMETMQDNC 373
Query: 692 TYQAWIDDCCDI--GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIG 749
+++D + G NL S +L SY + E + T L+Q
Sbjct: 374 NITEFLEDTDRVQYGGNLRVASSALYDSYYHWCEDN---ALTALKRETFVSWLRQNEATY 430
Query: 750 GIKRE-KIEKEWKSKRIIKGLKLK 772
IK + I R KG+ LK
Sbjct: 431 HIKYDLNIPSGSSHVRGFKGIALK 454
>gi|273809764|ref|YP_003344884.1| primase [Streptococcus phage ALQ13.2]
gi|224812516|gb|ACN64909.1| primase [Streptococcus phage ALQ13.2]
Length = 506
Score = 143 bits (361), Expect = 1e-31, Method: Composition-based stats.
Identities = 61/342 (17%), Positives = 122/342 (35%), Gaps = 39/342 (11%)
Query: 419 SDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ---------EF 469
+ D L ++GI D + + + + T VE P
Sbjct: 140 PEYRDVRRFIL-VKNGIYDKRKKKLLSFDHKFINFSTIETELVENAPKPIINGWDVDSWL 198
Query: 470 LDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529
LDL+SG E+++ + + +L G + ++ I + G G GK T LI G +
Sbjct: 199 LDLMSG---DSELVELLWQVIAASLNGNHSYRKSIWLVGNGNDGKGTFQQLISNLVGLKN 255
Query: 530 VINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA-AKIKQMTGGDCMT 588
V + + + L + G ++I + ++ + + G+ ++
Sbjct: 256 VAPLKLNQFSE---------RFGLAIIEGKTVIIGDDVQAGIYVDESSNFNSVVTGEPVS 306
Query: 589 ARLNYGNTYSESPASFTPFIV--PNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQK 646
N Y A F ++ N +N + +RR ++IPF K D ++A K
Sbjct: 307 IEKKGENPY---LAQFKKTVIQSTNAMPVFKNKSNGTYRRIVIIPFKKTFGINDDNWAIK 363
Query: 647 LETKYTLEAKKWFLKGVKAYISKGLDVD---IPEVCLKAKEEERQGTDTYQAWIDDCCDI 703
+ E ++ L + + LD D P+ + +E ++ +T ++++
Sbjct: 364 DDYINRKEVLEYVL-----WKAINLDFDKFNEPKAAQERMQEFKEENNTVYKFLNEYLSD 418
Query: 704 GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK 745
+ L Y + E N+ + S L Q
Sbjct: 419 VVSTRIPVRFLWDVYRSWC-HEGNHTIPKKSN--FEKELAQN 457
>gi|300722921|ref|YP_003712217.1| putative P4-specific DNA primase [Xenorhabdus nematophila ATCC
19061]
gi|297629434|emb|CBJ90035.1| putative P4-specific DNA primase [Xenorhabdus nematophila ATCC
19061]
Length = 777
Score = 143 bits (361), Expect = 1e-31, Method: Composition-based stats.
Identities = 61/368 (16%), Positives = 121/368 (32%), Gaps = 56/368 (15%)
Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEG-------EPSQEFLDLVSGYFE 478
+G +G+ DL+T Q K ++ + F + +++F ++
Sbjct: 409 RHLIGFNNGVFDLKTCQFRSHCKNNWLLLANDVEFNSPVSGETLKDHARQFWRWLNQATA 468
Query: 479 SEEVMDY-FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
+ E Y + M L Q F+ + GVGGSGKS + G ++A +
Sbjct: 469 NCENKAYRVLAALFMVLANRYDWQLFLEVTGVGGSGKSIFAEICSMLAGKGNTVSASMAT 528
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
+ R ++G ++I+ + + + IK +TGGD + + Y
Sbjct: 529 LENPRERVL---------IVGYSLIILPDQTRYVG-DGSGIKAITGGDEVAIDPKHKQPY 578
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFD--KPIANRDASFAQKLETKYTLEA 655
S + + N + RR ++ F P RD K+ + +
Sbjct: 579 STRIPAVVLAVNNNAM-SFSDRSGGVSRRRVIFNFSEVVPENERDPLLRDKIAAELPVII 637
Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWID-------- 698
+ P+ + E+ ++GTD +
Sbjct: 638 RHLL-----------HRFVDPQTARRLLAEQQKSAEALDIKRGTDPLVDFCGYLIASHEV 686
Query: 699 DCCDIGENL---WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755
D IG + L +Y Y + N K +S +++ G + ++
Sbjct: 687 DGLLIGNAEIMPFNPRKYLYHAYLAY--MKGNNLNKPVSVTRFGMDMP--GALAEYSQQY 742
Query: 756 IEKEWKSK 763
+ K+ K
Sbjct: 743 LRKKSKQG 750
>gi|327198106|ref|YP_004306636.1| DNA primase [Enterococcus phage EFRM31]
gi|297179201|gb|ADI23902.1| DNA primase [Enterococcus phage EFRM31]
Length = 528
Score = 143 bits (361), Expect = 1e-31, Method: Composition-based stats.
Identities = 67/414 (16%), Positives = 143/414 (34%), Gaps = 37/414 (8%)
Query: 386 WFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVK 445
+ + + N N+ + +L +G+ + + ++G +
Sbjct: 131 HYAENAKVANQFRNAVQRMAKNALASGANLPFNDKM---DPNKIAFKNGTYRFKEDTLKP 187
Query: 446 PTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIH 505
KE Y T +++ + + EE + +G Q +
Sbjct: 188 TVKEDYQTTRIEYDYIDNPKHNIVAEWIEYIL--EEDAKTLFQLIGRIFYRNQDPQAMVF 245
Query: 506 IRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIIS 565
G G +GKS +M+ I+ G +A + + N A +L G + I +
Sbjct: 246 ATGEGSNGKSHVMSFIEDLVGKSNTSHATLASLSGNNDKFASS------QLFGKMVNIET 299
Query: 566 ETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625
+ +K ++G D M+A N ++ + + N + + R
Sbjct: 300 DMPAQHIKQTGTLKTLSGNDVMSAEYKGINKFTFTNYA-LMIFTTNNMPTFSDTSHGFLR 358
Query: 626 RYIVIPFDKPIANRDASFAQKLET------KYTLEAKKWFLKGVKAYISKGLD------V 673
R I +PF+K + + + + LE + E + L+ + + GL+
Sbjct: 359 RIITLPFNKTMGRDNPTDSMWLERSKNFTYEEKSEFISYCLQQYRNVL-FGLNGETKGQF 417
Query: 674 DIPEVCLKAKEEERQGTDTYQAWID----DCCDIGENLWEESHSLAKSYSE-YREQELNY 728
+ K ++ QG DT +I+ + + +++ + L ++Y+ RE+ L
Sbjct: 418 WTSDNANKLRDAFIQGNDTMANFIELNELEFTNNIDDV-IPNTELLEAYNTMLREENL-- 474
Query: 729 DRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSK--RIIKGLKLKPAFESVDD 780
+S + LK+K I I K + R ++ K D+
Sbjct: 475 --MEVSAKKFIPELKRKAQSENIILSVITKRVDGRVQRCTTNVRWKTNTSETDN 526
>gi|326407787|gb|ADZ64858.1| phage protein, DNA primase [Lactococcus lactis subsp. lactis CV56]
Length = 544
Score = 143 bits (360), Expect = 1e-31, Method: Composition-based stats.
Identities = 52/327 (15%), Positives = 116/327 (35%), Gaps = 25/327 (7%)
Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE-----FLDLVSGYF- 477
+ + + +GI + T + T + T + D +
Sbjct: 175 AEAHLIPVANGIFNKNTQNLEPFSPSYVFTSTIATKYNAKAKVPNINGWNVDDWLLDLMS 234
Query: 478 ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
+E++ + + + G ++ + + G G GK T +LI G + V + +A
Sbjct: 235 GDKELVSLLWQIISASTNGNYSYRKGVWLVGKGNDGKGTFQSLIMNLIGRENVASVKAEQ 294
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
+ +L +++G +I ++ + NA + GD +
Sbjct: 295 FAE---------RFALSQVVGKTCIIGDDSQVSYLDNAGNYFSVVTGDPVPIEAKGKQP- 344
Query: 598 SESPASF-TPFI-VPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
+ A F I N RN + +RR +++PF+K + + ++ K + +
Sbjct: 345 --TLAVFNKLVIQSTNFLPKFRNKSNGTYRRLLIVPFNKSFTSDNDNWKIKDDYIKRKDV 402
Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLA 715
++ LK A D P+ ++ + D A+++D + + + + ++
Sbjct: 403 LEYVLK--IALSLNFDKFDEPKATQGLLDDFKISNDNVLAFVNDMFEEFVSDFLPTTFIS 460
Query: 716 KSYSEYREQELNYDRKRISTRTVTLNL 742
Y + E E K + R L L
Sbjct: 461 ALYRAWCEDEG---VKPFTKREFELKL 484
>gi|253990202|ref|YP_003041558.1| hypothetical protein PAU_02725 [Photorhabdus asymbiotica subsp.
asymbiotica ATCC 43949]
gi|253781652|emb|CAQ84815.1| conserved hypothetical protein [Photorhabdus asymbiotica]
Length = 778
Score = 142 bits (359), Expect = 2e-31, Method: Composition-based stats.
Identities = 51/357 (14%), Positives = 117/357 (32%), Gaps = 40/357 (11%)
Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYF-E 478
+G +G+ +L T + + E ++ G F + + +F +S +
Sbjct: 410 DLIGFSNGVYELSTQKFIPHQPEHWLMNHNGIKFTQPAIGENLPDHAPDFYRWLSHAAGQ 469
Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538
+E M+ + M L Q FI + G GGSGKS + G + +
Sbjct: 470 NENKMNRIKAALFMILANRYDWQLFIEVTGEGGSGKSIFTYIATLLAGEHNTASGNMRAL 529
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598
+ R + +G ++ + + + A IK +TG D + Y +S
Sbjct: 530 DEARGR---------YQFVGKSLITLPDQVKYVG-EGAGIKAITGSDLIEIDGKYEKQFS 579
Query: 599 ESPASFTPFIVPNKHL-FVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655
+ + N + RR ++ PF+ P+ +D +K+ + +
Sbjct: 580 TIIKA--VVLATNNEPMSFTERNGGIARRRVIFPFNIPVKESEKDPQLPEKISRELPVII 637
Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAW------IDDCC-----DIG 704
+ + +K L + + +D + ++D +
Sbjct: 638 RHLLNEFADQNKAKKLLQTQRDSNEALT--VKSNSDPLYRFCGYLVSVNDTTGMKMGNKN 695
Query: 705 ENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQ--KGFIGGIKREKIEKE 759
+ L +Y + E + ++ +L + + ++ + +K
Sbjct: 696 ISPRAPRMYLYHAYLSFMEAHG--FERPLTLTKFGESLPKIMLEYRKEYRKVRTKKG 750
>gi|300724280|ref|YP_003713598.1| putative phage primase [Xenorhabdus nematophila ATCC 19061]
gi|297630815|emb|CBJ91484.1| putative phage primase [Xenorhabdus nematophila ATCC 19061]
Length = 810
Score = 142 bits (359), Expect = 2e-31, Method: Composition-based stats.
Identities = 51/361 (14%), Positives = 118/361 (32%), Gaps = 40/361 (11%)
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF----- 477
+ S +G +G+ +L T + E ++ G F + + D ++
Sbjct: 438 EQRSDLIGFCNGVYELSTQKFTPHQPEHWLMNHNGIEFTQPAIGENLSDHAPDFYRWLSH 497
Query: 478 ---ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
++E M+ + M L Q FI + G GGSGKS + G +
Sbjct: 498 AAGQNENKMNRIKAALFMILANRYDWQLFIEVTGEGGSGKSVFTYIATLLAGEHNTASGN 557
Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
+ + R + +G ++ + + + A IK +TGGD + Y
Sbjct: 558 MRALDEARGR---------YQFVGKSLITLPDQVKYVG-EGAGIKAITGGDLIEVDGKYE 607
Query: 595 NTYSESPASFTPFIVPNKHL-FVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKY 651
+S + + N + RR ++ PF+ P+ +D +K+ +
Sbjct: 608 KQFSTIIKA--VVLATNNEPMSFTERNGGIARRRVIFPFNIPVKESEKDPQLPEKISREL 665
Query: 652 TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAW------IDDCC---- 701
+ + + +K L + + +D + ++D
Sbjct: 666 PVIIRHLLTEFADQNKAKKLLQAQRDSNEALT--VKSHSDPLYRFCGYLVSVNDVTGMKM 723
Query: 702 -DIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQ--KGFIGGIKREKIEK 758
+ + L +Y + E + ++ ++ + + ++ + +K
Sbjct: 724 GNKNISPRAPRMYLYHAYLSFMEAHG--FERPLTLTKFGESIPKIMLEYRKEYRKVRTKK 781
Query: 759 E 759
Sbjct: 782 G 782
>gi|290475667|ref|YP_003468556.1| putative phage primase [Xenorhabdus bovienii SS-2004]
gi|289174989|emb|CBJ81792.1| putative phage primase [Xenorhabdus bovienii SS-2004]
Length = 814
Score = 142 bits (359), Expect = 2e-31, Method: Composition-based stats.
Identities = 51/361 (14%), Positives = 118/361 (32%), Gaps = 40/361 (11%)
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF----- 477
+ S +G +G+ +L T + E ++ G F + + D ++
Sbjct: 442 EQRSDLIGFCNGVYELSTQKFTPHQPEHWLMNHNGIEFTQPAIGENLSDHAPDFYRWLSH 501
Query: 478 ---ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
++E M+ + M L Q FI + G GGSGKS + G +
Sbjct: 502 AAGQNENKMNRIKAALFMILANRYDWQLFIEVTGEGGSGKSVFTYIATLLAGEHNTASGN 561
Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
+ + R + +G ++ + + + A IK +TGGD + Y
Sbjct: 562 MRALDEARGR---------YQFVGKSLITLPDQVKYVG-EGAGIKAITGGDLIEVDGKYE 611
Query: 595 NTYSESPASFTPFIVPNKHL-FVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKY 651
+S + + N + RR ++ PF+ P+ +D +K+ +
Sbjct: 612 KQFSTIIKA--VVLATNNEPMSFTERNGGIARRRVIFPFNIPVKESEKDPQLPEKISREL 669
Query: 652 TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAW------IDDCC---- 701
+ + + +K L + + +D + ++D
Sbjct: 670 PVIIRHLLTEFADQNKAKKLLQAQRDSNEALT--VKSHSDPLYRFCGYLVSVNDVTGMKM 727
Query: 702 -DIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQ--KGFIGGIKREKIEK 758
+ + L +Y + E + ++ ++ + + ++ + +K
Sbjct: 728 GNKNISPRAPRLYLYHAYLSFMEAHG--FERPLTLTKFGESIPKIMLEYRKEYRKVRTKK 785
Query: 759 E 759
Sbjct: 786 G 786
>gi|167855067|ref|ZP_02477840.1| phage DNA primase-like protein [Haemophilus parasuis 29755]
gi|167853805|gb|EDS25046.1| phage DNA primase-like protein [Haemophilus parasuis 29755]
Length = 609
Score = 142 bits (359), Expect = 2e-31, Method: Composition-based stats.
Identities = 64/378 (16%), Positives = 130/378 (34%), Gaps = 48/378 (12%)
Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTGTP-FVEGEPSQEFLDLVSGY-FESEEV 482
+ +LG Q+G+L+ +TG+ + ++E ++ + + F D +S +++
Sbjct: 250 NPDYLGFQNGVLNKKTGEFLPHSEENFLRTIDPFECRTDCTDTPYFDDWLSFVSNGNQQK 309
Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542
D + M L ++ F+ G GG+GKS L + G + +
Sbjct: 310 HDAILAGLYMILTNRHEWHLFLEATGEGGAGKSILGEIATVLNGKSNTAILDLKAFESEK 369
Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602
L+G + + + A +K MTGGD + +L Y + E
Sbjct: 370 GR---------AVLVGKTLAYSPDQKPY-KGTADDLKAMTGGDPIKVKLLYKDEL-EIKV 418
Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFL 660
+ + N + + + RR ++I FD+ I +D F +K+ + L
Sbjct: 419 NAIFMMSTNYPITFTDRNGGITRRRVIILFDRKIPKEKKDVYFMEKVRAE-VYGIVNKLL 477
Query: 661 KGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAW-----IDDCCDI--- 703
PE E+ ++ + + ID
Sbjct: 478 A----------RFPNPEEARLILEDYQAQGEAVAVKREANHLVDFASAFKIDSNLKPLMM 527
Query: 704 -GENLWEESHS--LAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEW 760
G N ++S L K+Y Y E ++ ++ ++ G + IE
Sbjct: 528 WGSNRTQKSEDVALFKAYLFYCE--CLRLQQPLNLQSFKQAFPDALRDSGQTEKLIEIGV 585
Query: 761 KSKRIIKGLKLKPAFESV 778
K+ + + K ++
Sbjct: 586 KNGYTLLNIHWKDRLTTI 603
>gi|328543326|ref|YP_004303435.1| Gp33 [polymorphum gilvum SL003B-26A1]
gi|326413072|gb|ADZ70135.1| Gp33 [Polymorphum gilvum SL003B-26A1]
Length = 779
Score = 142 bits (358), Expect = 2e-31, Method: Composition-based stats.
Identities = 122/708 (17%), Positives = 206/708 (29%), Gaps = 112/708 (15%)
Query: 8 EQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYA 67
E + G +LI + K+P G L+ E+ ++ G + + L
Sbjct: 50 EALDAHVEAGHELIAVD--GKKPVASGWRTALPLAREQAERRLLAGRNVGVRLRDVDLV- 106
Query: 68 FDIDSK-----DEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTEST 122
D+D + D+ +D L P V G K L FR K
Sbjct: 107 LDVDPRNFAENDDPLTRLVRDFD--LRDAPFVVTGGGGKHLY-FR--KPAEVAVVNELDA 161
Query: 123 QGHLDILGCGQYFVAYN-IHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEIT 181
++ G+ VA +HP+T + Y R ++ + P SE+ L + ++++
Sbjct: 162 YRGVEFKSLGRQVVAAGSVHPETGRLYALDDDVLRMELSEAPEASEK----LLRAIEKLS 217
Query: 182 VPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETR 241
V + N + + T ++ LS YNG HDEW+ V+MA HH T
Sbjct: 218 VGA-------------SENRSGEITAEQLARLLSKLDVMAYNGRHDEWLKVMMASHHGTA 264
Query: 242 GSSKGKEIARRWSKQGSTY--DEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKL-- 297
G + +A WS Y DE +W++ D G T K + +
Sbjct: 265 GEGVDEFVA--WSTSDPDYAGDEARIRERWNSLDTRRGGVTLKTLLRALVDAGNGAWIEE 322
Query: 298 IPKGLLASRFSD------AYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKI 351
+ + F D + + + HF K
Sbjct: 323 VLRSAPEDDFDDVPEMPRSMGDLALARMNRNHFTVLHGGK----YLVGRESKHPTLGHVA 378
Query: 352 TASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEA 411
+S D S E + K+ W+ RR+ E
Sbjct: 379 VDWFSAGAISAHFD----SRTVEVEDGKQKALGSWWVKHPRRRQYEGV------------ 422
Query: 412 GSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLD 471
+ D S K T LY +
Sbjct: 423 ---------VFDPSP----------------KRTHT-SLYNLWRGWAVEPKAGDWSLLKR 456
Query: 472 LVSGYF--ESEEVMDYFTRCVGMALL-GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528
L+ E DY R + A+ + +G G+GK T +K G
Sbjct: 457 LLKDVLCRGDAESFDYVLRWAAFMVQKPDMPAEVALVFKGSKGAGKGTFARALKSLAGMH 516
Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN-ENDEINAAKIKQMTGGDCM 587
A+A + LM ++ + E D A +K + +
Sbjct: 517 GKQVAQAEHFVGRFNE----------HLMDCVLLFVDEGYWAGDPKAAGALKNLITEPVL 566
Query: 588 TARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR-DASFAQK 646
+ G P I N+ V D RR+ V D R + F
Sbjct: 567 SFEPK-GRPIVSGPNMLHVVIASNEDWIVPASAD--ERRFAVFEADTEARKRLPSGFFDT 623
Query: 647 LETKYTLEAKKWFLKGVK-----AYISKGLDVDIPEVCLKAKEEERQG 689
L + L ++ + + + + + + R+
Sbjct: 624 LNAQMANGGLAAMLHDLQNLDLGDWHPRMAIPNTQALIEQKVQAFRRE 671
>gi|9632452|ref|NP_049424.1| putative primase [Streptococcus phage DT1]
gi|4530172|gb|AAD21912.1| putative primase [Streptococcus phage DT1]
gi|37781293|gb|AAP36687.1| putative primase [Streptococcus phage kappa3]
Length = 504
Score = 142 bits (358), Expect = 2e-31, Method: Composition-based stats.
Identities = 61/342 (17%), Positives = 122/342 (35%), Gaps = 39/342 (11%)
Query: 419 SDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ---------EF 469
+ D L ++GI D + + + + T VE P
Sbjct: 138 PEYRDVRRFIL-VKNGIYDKRKKKLLSFDHKFINFSTIETELVENAPKPIINGWDVDSWL 196
Query: 470 LDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529
LDL+SG E+++ + + +L G + ++ I + G G GK T LI G +
Sbjct: 197 LDLMSG---DSELVELLWQVIAASLNGNHSYRKSIWLVGNGNDGKGTFQQLISNLVGLKN 253
Query: 530 VINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA-AKIKQMTGGDCMT 588
V + + + L + G ++I + ++ + + G+ ++
Sbjct: 254 VAPLKINQFSE---------RFGLAIIEGKTVIIGDDVQAGIYVDESSNFNSVVTGEPVS 304
Query: 589 ARLNYGNTYSESPASFTPFIV--PNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQK 646
N Y A F ++ N +N + +RR ++IPF K D ++A K
Sbjct: 305 IEKKGENPY---LAQFKKTVIQSTNAMPVFKNKSNGTYRRIVIIPFKKTFGINDDNWAIK 361
Query: 647 LETKYTLEAKKWFLKGVKAYISKGLDVD---IPEVCLKAKEEERQGTDTYQAWIDDCCDI 703
+ E ++ L + + LD D P+ + +E ++ +T ++++
Sbjct: 362 DDYINRKEVLEYVL-----WKAINLDFDKFNEPKATQERMQEFKEENNTVYKFLNEYLSD 416
Query: 704 GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK 745
+ L Y + E N+ + S L Q
Sbjct: 417 VVSTRIPVRFLWDVYRSWC-HEGNHTIPKKSN--FEKELAQN 455
>gi|325832761|ref|ZP_08165524.1| nucleoside triphosphatase, D5 family [Eggerthella sp. HGA1]
gi|325485900|gb|EGC88361.1| nucleoside triphosphatase, D5 family [Eggerthella sp. HGA1]
Length = 596
Score = 142 bits (358), Expect = 2e-31, Method: Composition-based stats.
Identities = 58/358 (16%), Positives = 123/358 (34%), Gaps = 34/358 (9%)
Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ-----------EFLDL 472
+ +G+ D + + E T+ + FVEG + +
Sbjct: 196 KDPELVVVNNGVYDYTSKFLMGFDPEFVFTEKSHVDFVEGAKNPVIHNDDDGTDWDVESW 255
Query: 473 VSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRG-VGGSGKSTLMNLIKYAFGNQYVI 531
+ + + +++ + VG L + + G +GK TL L++ G+
Sbjct: 256 MEEFSDDPAMVNLLWQVVGATLRPNVTWNKTAWLYSDSGNNGKGTLCTLMRNLLGDGAWA 315
Query: 532 NAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI--NAAKIKQMTGGDCMTA 589
+ +NP ++ + II++ N+ +AA +K + D
Sbjct: 316 SLPLKAF----------SNPFMLEPLSRVSAIITDENDTGTFVDDAAALKSIITHDPFLM 365
Query: 590 RLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASF--AQKL 647
+ + S F N+ +R+ ++ +RR +VIPF+K R+ + L
Sbjct: 366 DRKFKDPRSVLFNGF-MVQCVNELPKLRDKSESLYRRLLVIPFEKRFEGRERKYIKDDYL 424
Query: 648 ETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENL 707
+ K LE + L Y +D+P+ C+ EE + D + + ++
Sbjct: 425 KRKDVLEYVLYKLLATTDYYE----LDVPQTCIDMLEEFKLENDPVRQFAEEVFAEATWD 480
Query: 708 WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRI 765
+ Y + ++ + R + +L KG +K R+
Sbjct: 481 LLPYKFMYDCYRHWFQRNVPSGR-PVGRNAFLKSL--KGLAAECGWLVQDKVRSDGRM 535
>gi|295101357|emb|CBK98902.1| phage/plasmid primase, P4 family, C-terminal domain
[Faecalibacterium prausnitzii L2-6]
Length = 439
Score = 142 bits (358), Expect = 2e-31, Method: Composition-based stats.
Identities = 49/363 (13%), Positives = 115/363 (31%), Gaps = 24/363 (6%)
Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE-FLDLV 473
+ + + + +G L L G + E + + +L +
Sbjct: 78 LAAQVEDFPPVTDRIALANGTLYL-DGTFQEGKPE-IVRNRLPVRYDPKAAQPTHWLRFL 135
Query: 474 SGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
S E + +G L+ NK QR + I+G GG GKS + ++ FG
Sbjct: 136 SDLLY-PEDIPTVQEFIGYCLIPSNKGQRMMVIKGSGGEGKSQIGVVLSRLFGCN----- 189
Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM-TGGDCMTARLN 592
+ + + + L + + + + +K + T M
Sbjct: 190 ----MKDGSIGKISENRFARADLEHTLLCVDDDMRMEALRQTNYVKSIVTAQGQMDLERK 245
Query: 593 YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETK 650
+Y + + + D ++RR +++ +R D A+K+ +
Sbjct: 246 GKQSYQGWMYARLLAFSNGDLQALYDRSDGFYRRQLILTTKDKPLSRVDDPDIAEKMAAE 305
Query: 651 YTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD--CCDIGENLW 708
W +G++ + G + + +E ++ + +++ + +
Sbjct: 306 -VEGILLWAFEGLQRLVKNGFQFTESDRAKRNRELVKRDNNNVFDFLESEGYIRLKADAC 364
Query: 709 EESHSLAKSYSEYREQELNYDRKRISTRTVTLNLK--QKGFIGGIKREKIEKEWKSKRII 766
S L + Y + E+ I +R + L Q+ + + + R
Sbjct: 365 TSSKELYEVYKMWCEEN---SLNAIKSRGFSDALIANQRRYNLESTNNIVNSSGRRVRGF 421
Query: 767 KGL 769
G+
Sbjct: 422 VGI 424
>gi|88807242|ref|ZP_01122754.1| hypothetical protein WH7805_11863 [Synechococcus sp. WH 7805]
gi|88788456|gb|EAR19611.1| hypothetical protein WH7805_11863 [Synechococcus sp. WH 7805]
Length = 831
Score = 142 bits (358), Expect = 2e-31, Method: Composition-based stats.
Identities = 56/351 (15%), Positives = 112/351 (31%), Gaps = 23/351 (6%)
Query: 422 LDSSSRFLGEQDGILDLETGQKVK-PTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESE 480
DS +G +G L+ TGQ +E ++T + F + ++
Sbjct: 331 WDS-VDLIGFANGTLNWRTGQFTPGHRREDFLTFCLDYNYEPEAKCPNFHRFLREACAND 389
Query: 481 E-VMDYFTRCVGMALLGGNKAQRFIH-----IRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
+ +++ A+ + +Q F + G G GK TL + G +
Sbjct: 390 DGLINLVRGGFRWAIAPKDTSQAFPIERSFDVTGRKGRGKGTLSEALTALVGGDHGRGLI 449
Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594
S N SL L+G R V + ++ +A + + + +L Y
Sbjct: 450 KSSTFTN--------PNSLAGLIGKR-VAMDPDSDGRISSAGTFNAVVSNEPVEVKLLYK 500
Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLE 654
+T+ + + + RR I IPFD + RD +K+ +
Sbjct: 501 DTHPQRLGVVVWRFFNDSPGASGGGVEGMGRRIITIPFDVEPSKRDPLLKRKIV-EEAAG 559
Query: 655 AKKWFLKGVKAYISKGL-DVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHS 713
W ++ L + + A E D ++ + G + +
Sbjct: 560 IFAWVFAMTTDEMTAALANSGTVQSSADASIEHALERDPVVRFLLETYPEGID-RIQGRD 618
Query: 714 LAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKR 764
L K + ++ Q + S +K+ G+ + + R
Sbjct: 619 LFKQWCDWCAQVRHESG---SETRFGGLIKKVRVGVGVDAKGVAVRVSKGR 666
>gi|291618473|ref|YP_003521215.1| Alpha [Pantoea ananatis LMG 20103]
gi|291153503|gb|ADD78087.1| Alpha [Pantoea ananatis LMG 20103]
Length = 774
Score = 142 bits (358), Expect = 2e-31, Method: Composition-based stats.
Identities = 59/367 (16%), Positives = 119/367 (32%), Gaps = 58/367 (15%)
Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEG-------EPSQEFLDLVSGYFE-S 479
+G ++G LD +G +E ++ + + + F + S
Sbjct: 410 LIGFRNGALDTRSGTFSPHRRENWLRTLSDVDYTHPVHGETLERHAPHFWQWLDRTAGRS 469
Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539
E D + M L Q F+ + G GGSGKS + + G ++A +
Sbjct: 470 AEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATMLAGTDNAVSAIIETLE 529
Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599
+R ++G ++ + + E + A IK +TGG M L
Sbjct: 530 YSRER---------ASVIGYSLIRLPD-QEKWSGDGAGIKAITGG--MRCPLTPSTATPT 577
Query: 600 SPASFTPFIVPNKHL-FVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAK 656
P S + N + + RR +++ F + I RD QK++ + + +
Sbjct: 578 RPTSRRVILAVNNNPMRFTDRSGGVSRRRVILHFAEIIPANERDPQLKQKIQAELAVIVR 637
Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGENL 707
+ + P+ +++ ++ TD + E
Sbjct: 638 QLMQR-----------FSSPQDARALLQQQQNSGEAMRIKRDTDPMVDFCGYLFATAEPN 686
Query: 708 -----------WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKI 756
+ L +Y Y E R +S +T + L+ + R +
Sbjct: 687 GLHMGNASIQPLQPRRYLYHAYLAYMEANG--YRNPLSMKTFSQALES--ILREYGRSYL 742
Query: 757 EKEWKSK 763
++ K+
Sbjct: 743 KRRTKTG 749
>gi|301169147|emb|CBW28744.1| phage phi-r73 primase-like protein [Haemophilus influenzae 10810]
Length = 589
Score = 142 bits (357), Expect = 3e-31, Method: Composition-based stats.
Identities = 64/420 (15%), Positives = 144/420 (34%), Gaps = 58/420 (13%)
Query: 369 LSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRF 428
+ E+++ K+ +F ++ +S + ++L+A + + S+
Sbjct: 186 TWNKQENDDLEEKAVKFLDENEFN----YSDSTIERLIKTLKAQ-----LPRMGEMSNDL 236
Query: 429 LGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPS----QEFLDLVSGYFESEEVMD 484
+ ++G+L+ T + ++ ++T + + ++L VS +++
Sbjct: 237 IAFENGVLNRNTMEFESHNRQNWLTSCIPHKYDKQATDTPLFDKWLSFVSD--GNKDKAR 294
Query: 485 YFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544
+ L Q F I G GGSGKS ++ G + ++ R
Sbjct: 295 NILAVLYAILTNRYNWQMFFEITGKGGSGKSVFASIATLLAGVKNTASSNLEKFDDERGL 354
Query: 545 EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604
L +++ E ++ + + +K +TGGD + R NY + + +
Sbjct: 355 SG---------LENKTLILCPEQSKYAG-DGSGLKSITGGDTVRVRYNYQDPFDVKITA- 403
Query: 605 TPFIVPNKHL-FVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLK 661
++ N RR ++ F K + RD F K+ +
Sbjct: 404 -LVMLINNRPCSFTERSGGVDRRRVIFDFKKIVPEDERDPHFMDKITLEVGGII------ 456
Query: 662 GVKAYISKGLDVDIPEVCLKAKEEERQG------TDTYQAWI--------DDCCDIGE-- 705
+ D + + LKA+ E ++ +D + D IG
Sbjct: 457 --RKVFDSFHDPNDAKKALKAQMESQEALEVKKLSDPLTDFFGYFYTTEQTDGLFIGVTN 514
Query: 706 -NLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKR 764
L + L +Y Y + + + + ++Q G K + +++ K+ R
Sbjct: 515 MGLDKIRTHLYPAYLAYTKA---MNIGELGLNNFVIGVEQALKQNGNKHDFMKRHTKTGR 571
>gi|160944691|ref|ZP_02091918.1| hypothetical protein FAEPRAM212_02205 [Faecalibacterium prausnitzii
M21/2]
gi|158443875|gb|EDP20879.1| hypothetical protein FAEPRAM212_02205 [Faecalibacterium prausnitzii
M21/2]
Length = 441
Score = 142 bits (357), Expect = 3e-31, Method: Composition-based stats.
Identities = 50/363 (13%), Positives = 115/363 (31%), Gaps = 24/363 (6%)
Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ-EFLDLV 473
+ + + + +G L L G + E + + P +L +
Sbjct: 80 LAAQVEDFPPVTDRIALANGTLYL-DGTFQEGKPE-IVRNRLPIRYDPKAPQPSHWLRFL 137
Query: 474 SGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
S E + +G L+ NK QR + I+G GG GKS + ++ FG
Sbjct: 138 SDLLY-PEDIPTVQEFIGYCLIPSNKGQRMMVIKGSGGEGKSQIGVVLSRLFGCN----- 191
Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM-TGGDCMTARLN 592
+ + + + L + + + + +K + T M
Sbjct: 192 ----MKDGSIGKISENRFARADLEHTLLCVDDDMRMEALRQTNYVKSIVTAQGQMDLERK 247
Query: 593 YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETK 650
+Y + + + D ++RR +++ +R D A+K+ +
Sbjct: 248 GKQSYQGWMYARLLAFSNGDLQALYDRSDGFYRRQLILTTKDKPLSRVDDPDIAEKMAAE 307
Query: 651 YTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD--CCDIGENLW 708
W +G++ + G + + +E ++ + +++ + +
Sbjct: 308 -VEGILLWAFEGLQRLVKNGFQFTESDRAKRNRELVKRDNNNVFDFLESEGYIRLKADAC 366
Query: 709 EESHSLAKSYSEYREQELNYDRKRISTRTVTLNLK--QKGFIGGIKREKIEKEWKSKRII 766
S L + Y + E+ I R + L Q+ + + + R
Sbjct: 367 TSSKELYEVYRMWCEEN---SLNAIKARGFSDALIANQRRYNLESTNNIVNSSGRRVRGF 423
Query: 767 KGL 769
G+
Sbjct: 424 FGI 426
>gi|303251447|ref|ZP_07337623.1| putative primase [Actinobacillus pleuropneumoniae serovar 6 str.
Femo]
gi|307252318|ref|ZP_07534215.1| hypothetical protein appser6_8360 [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|302649679|gb|EFL79859.1| putative primase [Actinobacillus pleuropneumoniae serovar 6 str.
Femo]
gi|306860240|gb|EFM92256.1| hypothetical protein appser6_8360 [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
Length = 600
Score = 142 bits (357), Expect = 3e-31, Method: Composition-based stats.
Identities = 53/355 (14%), Positives = 124/355 (34%), Gaps = 35/355 (9%)
Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPS----QEFLDLVSGYFESEEV 482
+ +G+L+ T + + ++T + E + ++L+ VS +++
Sbjct: 246 DLIAFDNGVLNRNTLEFKPHNRLNWLTACIPHNYDEQATNTPYFDKWLNFVSD--GNQDK 303
Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542
+ L Q F + G GGSGKS N+ G + I+A+ D +
Sbjct: 304 ARNILAALYAILTNRYNWQIFFEVTGKGGSGKSVFANIATLLAGERNTISAKLEDFDNAK 363
Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602
L +++ E ++ N +K ++GGD + + + +
Sbjct: 364 ---------DLEGFEDKTLILCPEQSKYGG-NGGGLKTISGGDLLRVNPKHKKPF-FTKI 412
Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFL 660
+ ++ N+ RR ++ F K + RD +F +K+ + + L
Sbjct: 413 TALIMLINNEPCRFTERAGGVDRRRVIFDFKKVVPESERDPTFTEKITLEVG-GIIRKVL 471
Query: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID--------DCCDIGE---NLWE 709
+ ++ +A E ++ +D + D +G + +
Sbjct: 472 DAFPDSLEAKKALNTQMNSQEAL-EVKKLSDPLTDFFSYFYTTEQIDGLFVGVANMGVDK 530
Query: 710 ESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKR 764
+ +Y Y + +N + + ++Q G + + ++K K+ R
Sbjct: 531 IRTHIYPAYLAY-TRAMNISELGLGN--FVIGIEQALKQHGNQHDFMKKHTKTGR 582
>gi|6739647|gb|AAF27348.1|AF198256_2 phage phi-R73 primase-like protein [Haemophilus influenzae]
Length = 589
Score = 142 bits (357), Expect = 3e-31, Method: Composition-based stats.
Identities = 64/420 (15%), Positives = 143/420 (34%), Gaps = 58/420 (13%)
Query: 369 LSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRF 428
+ E+++ K+ +F ++ +S + ++L+A + + S+
Sbjct: 186 TWNKQENDDLEEKAVKFLDENEFN----YSDSTIERLIKTLKAQ-----LPRMGEMSNDL 236
Query: 429 LGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPS----QEFLDLVSGYFESEEVMD 484
+ ++G+L+ T + ++ ++T + + ++L VS +++
Sbjct: 237 IAFENGVLNRNTMEFESHNRQNWLTSCIPHKYDKQATDTPLFDKWLSFVSD--GNKDKAR 294
Query: 485 YFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544
+ L Q F I G GGSGKS ++ G + ++ R
Sbjct: 295 NILAVLYAILTNRYNWQMFFEITGKGGSGKSVFASIATLLAGVKNTASSNLEKFDDERGL 354
Query: 545 EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604
L +++ E ++ + + +K +TGGD + R NY + + +
Sbjct: 355 SG---------LENKTLILCPEQSKYAG-DGSGLKSITGGDTVRVRYNYQDPFDVKITA- 403
Query: 605 TPFIVPNKHL-FVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLK 661
++ N RR ++ F K + RD F K+ +
Sbjct: 404 -LVMLINNRPCSFTERSGGVDRRRVIFDFKKIVPEDERDPHFMDKITLEVGGII------ 456
Query: 662 GVKAYISKGLDVDIPEVCLKAKEEERQG------TDTYQAWI--------DDCCDIGE-- 705
+ D + + LKA+ E ++ +D + D IG
Sbjct: 457 --RKVFDSFHDPNDAKKALKAQMESQEALEVKKLSDPLTDFFGYFYTTEQTDGLFIGVTN 514
Query: 706 -NLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKR 764
L + L +Y Y + + + + ++Q G K +++ K+ R
Sbjct: 515 MGLDKIRTHLYPAYLAYTKA---MNIGELGLNNFVIGVEQALKQNGNKHNFMKRHTKTGR 571
>gi|296532655|ref|ZP_06895354.1| phage/plasmid primase [Roseomonas cervicalis ATCC 49957]
gi|296267026|gb|EFH12952.1| phage/plasmid primase [Roseomonas cervicalis ATCC 49957]
Length = 489
Score = 141 bits (356), Expect = 3e-31, Method: Composition-based stats.
Identities = 67/415 (16%), Positives = 137/415 (33%), Gaps = 42/415 (10%)
Query: 387 FNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLE---TGQK 443
+ T + + SKA+ + E ++ + + +D+ + G ++ E T
Sbjct: 92 YTTPTGKPSAVALSKARINSSLNEMAAMLAAPNFFVDA-PAGINCASGFIEFERDGTPTI 150
Query: 444 VKPTKELYITKSTGTPF-VEGEPSQE----FLDLVSGYFESEE----VMDYFTRCVGMAL 494
+ E + + + P Q L+ G F+ +E +++ G A
Sbjct: 151 KPHSPEQRARHTLPGRYPAKIAPDQRAASLMTKLLQGCFKGDEDAEAKINFLGEIAGAAA 210
Query: 495 LG---GNKAQRFIHIRGVGG-SGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKAN 550
G + I ++G +GKS +++L++ + + + + R
Sbjct: 211 TGWSTRLTKPKAIILKGETAENGKSQILDLLRGLLPDTAICSIPPQKLADERF------- 263
Query: 551 PSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFI-V 609
L+ L G + E I + K G+ M+ R Y + P F +
Sbjct: 264 --LVTLAGKLLNASDELTSATAIGSDSFKSAITGEPMSGRDVYRSAVGFRP--FALHVYA 319
Query: 610 PNKHLFVRN-PDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAY 666
N R D RR + F + I R Q++ + ++G
Sbjct: 320 TNDLPTFRGGMDRGVMRRLAALTFQRTIPTNERIEHIGQRIGQDEPDLLLDFAVQGASRL 379
Query: 667 ISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENL-WEESHSLAKSYSEYREQE 725
I++ P +A E G D QAW+ G ++ + + + +E
Sbjct: 380 IAR-KSYAEPTSSNQAIREWALGADAVQAWLHTVNVTGNAHDKCKTREAYQYFRNWALEE 438
Query: 726 LNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDD 780
+ T + + + + ++GL+L P S+DD
Sbjct: 439 GYQSTALPAVTQFTQRV------VAQRPQITIIRPQRVSHLRGLRLGP--PSIDD 485
>gi|160943405|ref|ZP_02090639.1| hypothetical protein FAEPRAM212_00896 [Faecalibacterium prausnitzii
M21/2]
gi|158445265|gb|EDP22268.1| hypothetical protein FAEPRAM212_00896 [Faecalibacterium prausnitzii
M21/2]
Length = 438
Score = 141 bits (356), Expect = 4e-31, Method: Composition-based stats.
Identities = 53/380 (13%), Positives = 120/380 (31%), Gaps = 25/380 (6%)
Query: 398 ENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTG 457
+ +K LE + + + D + Q+G+ L G + L+
Sbjct: 68 TSGLSKKVTNILETIKLLAFS-DPFPIEQDCIHFQNGVYHLPDGSFQESR--LFCQNRLP 124
Query: 458 TPFVEGEPSQ-EFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKST 516
+ S +L + + + + +G L+ K Q+ + I G GG GKS
Sbjct: 125 VRYDPKAASPDRWLTFLHELLDDAD-IPTLQEYLGYCLIPSTKGQKMMLIVGKGGEGKSR 183
Query: 517 LMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAA 576
+ ++K G+ N + NR L ++I + + N
Sbjct: 184 IGLVLKRLMGD-AASNGSVQKVENNRFAR--------ADLERRLLMIDDDMDMNALPKTN 234
Query: 577 KIKQM-TGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP 635
IK + T + +Y + + + D ++RR +++
Sbjct: 235 YIKTIVTAEAKLDLERKGVQSYQRDIYARFLCFGNGALTSLYDHSDGFFRRQLILTTKDK 294
Query: 636 IANR--DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTY 693
A+R D +K+ + W L+G+ + + E + ++ ++
Sbjct: 295 PADRTDDPFLVEKMCAELE-GILLWCLEGLHRLVQNNFRFTVSERAAANVDTIKRSSNNV 353
Query: 694 QAWIDD--CCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQ--KGFIG 749
+++ + S + Y + E + +S + L+Q + +
Sbjct: 354 IDFMESEGYFRFKADYSISSKDFYEIYKLWCEDNACHS---VSAIRFSAELRQNDRRYNL 410
Query: 750 GIKREKIEKEWKSKRIIKGL 769
+ R G+
Sbjct: 411 EATNNIYLPGGRRVRGFVGI 430
>gi|295102180|emb|CBK99725.1| phage/plasmid primase, P4 family, C-terminal domain
[Faecalibacterium prausnitzii L2-6]
Length = 439
Score = 141 bits (356), Expect = 4e-31, Method: Composition-based stats.
Identities = 49/363 (13%), Positives = 114/363 (31%), Gaps = 24/363 (6%)
Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ-EFLDLV 473
+ + + + +G L L G + E + + +L +
Sbjct: 78 LAAQVEDFPPVTDRIALANGTLYL-DGTFQEGKPE-IVRNRLPVKYDPKAAQPVHWLRFL 135
Query: 474 SGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
S E + +G L+ NK QR + I+G GG GKS + ++ FG
Sbjct: 136 SDLLY-PEDIPTVQEFIGYCLIPSNKGQRMMVIKGNGGEGKSQIGVVLSRLFGCN----- 189
Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM-TGGDCMTARLN 592
+ + + + L + + + + +K + T M
Sbjct: 190 ----MKDGSIGKISENRFARADLEHTLLCVDDDMRMEALRQTNYVKSIVTAQGQMDLERK 245
Query: 593 YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETK 650
+Y + + + D ++RR +++ +R D A+K+ +
Sbjct: 246 GKQSYQGWMYARLLAFSNGDLQALYDRSDGFYRRQLILTTKDKPLSRVDDPDIAEKMAAE 305
Query: 651 YTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD--CCDIGENLW 708
W +G++ + G + + +E ++ + +++ + +
Sbjct: 306 -VEGILLWAFEGLQRLVKNGFQFTESDRAKRNRELVKRDNNNVFDFLESEGYIRLKADAC 364
Query: 709 EESHSLAKSYSEYREQELNYDRKRISTRTVTLNLK--QKGFIGGIKREKIEKEWKSKRII 766
S L + Y + E+ I R + L Q+ + + + R
Sbjct: 365 TSSKELYEVYKMWCEEN---SLNAIKARGFSDALIANQRRYNLESTNNIVNSSGRRVRGF 421
Query: 767 KGL 769
G+
Sbjct: 422 IGI 424
>gi|295103749|emb|CBL01293.1| phage/plasmid primase, P4 family, C-terminal domain
[Faecalibacterium prausnitzii SL3/3]
Length = 438
Score = 141 bits (356), Expect = 4e-31, Method: Composition-based stats.
Identities = 51/379 (13%), Positives = 119/379 (31%), Gaps = 25/379 (6%)
Query: 399 NSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGT 458
+ +K LE + + + D + Q+G+ L G + L+
Sbjct: 69 SGLSKKITNILETIKLLAFS-DPFPIEQDCIHLQNGVYHLPDGSFQESR--LFCQNRLPV 125
Query: 459 PFVEGEPSQ-EFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTL 517
+ + +L + + + + +G L+ K Q+ + I G GG GKS +
Sbjct: 126 KYDPKAATPDRWLTFLHELLDDAD-IPTLQEYLGYCLIPSTKGQKMMLIVGKGGEGKSRI 184
Query: 518 MNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK 577
++K G+ N + NR L ++I + + N
Sbjct: 185 GLVLKRLMGD-AASNGSVQKVENNRFAR--------ADLERRLLMIDDDMDMNALPKTNY 235
Query: 578 IKQM-TGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI 636
IK + T + +Y + + + D ++RR +++
Sbjct: 236 IKTIVTAEAKLDLERKGVQSYQRDIYARLLCFGNGALTSLYDHSDGFFRRQLILTTKDKP 295
Query: 637 ANR--DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQ 694
+R D +K+ + W L+G+ + + E + ++ ++
Sbjct: 296 TDRMDDPFLVEKMCAELE-GILLWCLEGLHRLVQNNFRFTVSERAAANVDTIKRSSNNVI 354
Query: 695 AWIDD--CCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQ--KGFIGG 750
+++ + S Y ++ E + +S + L+Q + +
Sbjct: 355 DFMESEGYFRFKADYSISSKEFYDIYKQWCEDNACHS---VSAIRFSAELRQNDRRYNLE 411
Query: 751 IKREKIEKEWKSKRIIKGL 769
+ R G+
Sbjct: 412 ATNNIYLPGGRRVRGFVGI 430
>gi|118445168|ref|YP_879280.1| primase [Clostridium novyi NT]
gi|118135624|gb|ABK62668.1| putative primase [Clostridium novyi NT]
Length = 724
Score = 141 bits (356), Expect = 4e-31, Method: Composition-based stats.
Identities = 64/442 (14%), Positives = 146/442 (33%), Gaps = 39/442 (8%)
Query: 334 YKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR 393
Y +K ++ W+L + I ++ ++D + + + + +
Sbjct: 280 YCDEKGHINNWAL-VQYIIKEQPSYTKGNLWFIYDTEKGFYKYMEL-REVQKMYFKYALN 337
Query: 394 QNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYIT 453
+ +++K+ A+ L S S D+ D + +GI+D+E+ + + +
Sbjct: 338 DKDKTVTRSKNFAELLMLNS--SDARDIHDEKKY-INCLNGIIDIESDELLPHDPKYKTE 394
Query: 454 KSTGTPFVEGEPSQ----EFLDLVSGYFESEEVMDYFTRCVGMALLGGNKA-QRFIHIRG 508
++ + EF + E + G+ L ++ Q +G
Sbjct: 395 IQFQANYISEWKDKFNNSEFKKFLDTTL-DEGSITTLQESWGLMLSPHSREVQNCFIYKG 453
Query: 509 VGGSGKSTLMNLIKYAFGNQ-YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISET 567
G +GKS ++ + + Y+ + D + + G + I+ +
Sbjct: 454 EGSNGKSATFDIQEALIKDNKYICSIGLGDFGE---------PFVISMAEGKHVNIVRDD 504
Query: 568 NENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627
+ + K M G+ + + + T F N+ + ++RR
Sbjct: 505 ELSGKTVNKFFKSMVCGEPILVNRKNKDLVRLG-FNMTMFFGLNRLPSAADKSTGFFRRP 563
Query: 628 IVIPFDKPIAN------------RDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDI 675
I+IPF+ +D A ++ W +G+K S V +
Sbjct: 564 IIIPFNVSFGTEKEVKEGTRDKLKDTQLADRIIQNELDLVFMWAYEGLKRVKSNKWKVTV 623
Query: 676 PEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEE--SHSLAKSYSEYREQELNYDRKRI 733
E + EE RQ D+ A+ + I E+ ++ Y ++ + D +
Sbjct: 624 SESSEQEMEEYRQEVDSSYAFFKEKLKIEPKSGEKILKDNVYNRYLQWCSES---DITPM 680
Query: 734 STRTVTLNLKQKGFIGGIKREK 755
+ K G + +
Sbjct: 681 NKVQFGRQFKSFGVKEKVSNSR 702
>gi|9885251|emb|CAC04163.1| putative primase [Lactococcus phage phi31]
Length = 492
Score = 141 bits (356), Expect = 4e-31, Method: Composition-based stats.
Identities = 59/361 (16%), Positives = 127/361 (35%), Gaps = 40/361 (11%)
Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTG--------TPFVEGEPSQEFLDLVSG 475
+S + ++GI + +T + + T + P + G ++L +
Sbjct: 124 ASRDLVPVKNGIYNKKTKKLEPFSNRYVFTSTIETEYIEEIEAPNINGWNVDDWL--LDL 181
Query: 476 YFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535
EE++ + + +L G ++ I G G GK TL LI G Q V + +
Sbjct: 182 MSGDEELVKLLWQVISASLNGNYSYRKSIWFVGEGNDGKGTLQQLISNLVGLQNVASLKI 241
Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAA-KIKQMTGGDCMTARLNYG 594
+ + +L + G ++I + I+ + + G+ +
Sbjct: 242 NQFSE---------RFTLSMIEGKTVIIGDDVQAGLYIDDSSNFNSVVTGEPVFVEEKGK 292
Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLE 654
Y T N VRN + +RR+++IPF K + +D ++A K + + E
Sbjct: 293 QPYVSFYKK-TVIQSTNGLPKVRNKTNGTYRRFLIIPFRKTFSAKDDNWAIKDDYIFREE 351
Query: 655 AKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
++ LK + D P+ +E ++ ++ ++++ ++ L
Sbjct: 352 VLQYVLKKAIELNFE--RFDEPQATKVMMQEFKEKNNSIIEFVNEWFPQFKSNVLPVRFL 409
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPA 774
Y E+ L ++ F + + + K K ++ K
Sbjct: 410 WWLYQEWCRDSG------------YTALAKRQFDNDLSKNIPDNWQKKK-----IRPKDD 452
Query: 775 F 775
F
Sbjct: 453 F 453
>gi|9632974|ref|NP_050002.1| putative primase [Streptococcus phage Sfi21]
gi|5524055|gb|AAD44107.1|AF115103_37 orf382 gp [Streptococcus phage Sfi21]
gi|2352442|gb|AAC72440.1| orf382 [Streptococcus phage Sfi21]
Length = 382
Score = 141 bits (355), Expect = 4e-31, Method: Composition-based stats.
Identities = 61/342 (17%), Positives = 122/342 (35%), Gaps = 39/342 (11%)
Query: 419 SDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ---------EF 469
+ D L ++GI D + + + + T VE P
Sbjct: 16 PEYRDVRRFIL-VKNGIYDKRKKKLLSFDYKFINFSTIETELVENAPKPTINGWDVDSWL 74
Query: 470 LDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529
LDL+SG E+++ + + +L G + ++ I + G G GK T LI G +
Sbjct: 75 LDLMSG---DSELVELLWQVIAASLNGNHSYRKSIWLVGNGNDGKGTFQQLISNLVGLKN 131
Query: 530 VINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA-AKIKQMTGGDCMT 588
V + + + L + G ++I + ++ + + G+ ++
Sbjct: 132 VAPLKLNQFSE---------RFGLAIIEGKTVIIGDDVQAGIYVDESSNFNSVVTGEPVS 182
Query: 589 ARLNYGNTYSESPASFTPFIV--PNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQK 646
N Y A F ++ N +N + +RR ++IPF K D ++A K
Sbjct: 183 IEKKGENPY---LAQFKKTVIQSTNAMPVFKNKSNGTYRRIVIIPFKKTFGINDDNWAIK 239
Query: 647 LETKYTLEAKKWFLKGVKAYISKGLDVD---IPEVCLKAKEEERQGTDTYQAWIDDCCDI 703
+ E ++ L + + LD D P+ + +E ++ +T ++++
Sbjct: 240 DDYINRKEVLEYVL-----WKAINLDFDKFSEPKATQERMQEFKEENNTVYKFLNEYLSD 294
Query: 704 GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK 745
+ L Y + E N+ + S L Q
Sbjct: 295 VVSTRIPVRFLWDVYRSWC-HEGNHTIPKKSN--FEKELAQN 333
>gi|310828490|ref|YP_003960847.1| prophage DNA primase [Eubacterium limosum KIST612]
gi|308740224|gb|ADO37884.1| prophage DNA primase [Eubacterium limosum KIST612]
Length = 602
Score = 141 bits (355), Expect = 5e-31, Method: Composition-based stats.
Identities = 56/338 (16%), Positives = 112/338 (33%), Gaps = 36/338 (10%)
Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ-----------EFLDL 472
+ +GI D E + + T + FV + + +
Sbjct: 197 KDKALVPVNNGIFDYENKILLDFDPKYVFTSKSNVDFVPNARNPVIHNDQDGTDWDVVSW 256
Query: 473 VSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGV-GGSGKSTLMNLIKYAFGNQYVI 531
+ + EV+ +G +L + + + G +GK T L++ G
Sbjct: 257 MEELSDDPEVVKVLWEVLGASLRPNMPWNKSVWLYSTQGNNGKGTFCALVRNLLGKGSWA 316
Query: 532 NAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEIN-AAKIKQMTGGDCMTAR 590
+ D Q+ L L + +I E + I+ AA +K + GD
Sbjct: 317 SIPLKDFGQD---------FMLEELTRVQAIITDENDVGTYIDKAATLKSVITGDPFLLN 367
Query: 591 LNYGNTYSESPASFTPFIV--PNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASF--AQK 646
Y P F ++ N+ +++ ++ +RR +VIPF+K + +
Sbjct: 368 RKYKAP---MPCLFRGLMIQCVNEIPKLKDKSESMYRRLLVIPFEKRFEGCERKYIKDDY 424
Query: 647 LETKYTLEAKKWFLKGVKAYISKGLD-VDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE 705
L K + ++ L D +PE K+ + R D + + D+ D
Sbjct: 425 LGRK---DVLEYVL--FHTLYEMDFDEFSVPEASEKSLDVFRVDNDPLRQFADEVFDKAA 479
Query: 706 NLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLK 743
L Y + + + K +S + +L+
Sbjct: 480 WDLLPCKFLYDLYRYWFQTNVPQG-KMLSRNSFYSSLE 516
>gi|9634996|ref|NP_056712.1| putative primase [Streptococcus phage Sfi11]
gi|23455861|ref|NP_695091.1| putative primase [Streptococcus phage O1205]
gi|7523556|gb|AAF63059.1|AF158600_13 putative primase [Streptococcus phage Sfi11]
gi|7523586|gb|AAF63088.1|AF158601_16 putative primase [Streptococcus phage SFi18]
gi|2444093|gb|AAC79529.1| ORF13 [Streptococcus phage O1205]
Length = 504
Score = 141 bits (355), Expect = 5e-31, Method: Composition-based stats.
Identities = 61/342 (17%), Positives = 122/342 (35%), Gaps = 39/342 (11%)
Query: 419 SDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ---------EF 469
+ D L ++GI D + + + + T VE P
Sbjct: 138 PEYRDVRRFIL-VKNGIYDKRKKKLLSFDYKFINFSTIETELVENAPKPTINGWDVDSWL 196
Query: 470 LDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529
LDL+SG E+++ + + +L G + ++ I + G G GK T LI G +
Sbjct: 197 LDLMSG---DSELVELLWQVIAASLNGNHSYRKSIWLVGNGNDGKGTFQQLISNLVGLKN 253
Query: 530 VINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA-AKIKQMTGGDCMT 588
V + + + L + G ++I + ++ + + G+ ++
Sbjct: 254 VAPLKLNQFSE---------RFGLAIIEGKTVIIGDDVQAGIYVDESSNFNSVVTGEPVS 304
Query: 589 ARLNYGNTYSESPASFTPFIV--PNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQK 646
N Y A F ++ N +N + +RR ++IPF K D ++A K
Sbjct: 305 IEKKGENPY---LAQFKKTVIQSTNAMPVFKNKSNGTYRRIVIIPFKKTFGINDDNWAIK 361
Query: 647 LETKYTLEAKKWFLKGVKAYISKGLDVD---IPEVCLKAKEEERQGTDTYQAWIDDCCDI 703
+ E ++ L + + LD D P+ + +E ++ +T ++++
Sbjct: 362 DDYINRKEVLEYVL-----WKAINLDFDKFSEPKATQERMQEFKEENNTVYKFLNEYLSD 416
Query: 704 GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK 745
+ L Y + E N+ + S L Q
Sbjct: 417 VVSTRIPVRFLWDVYRSWC-HEGNHTIPKKSN--FEKELAQN 455
>gi|190150075|ref|YP_001968600.1| primase [Actinobacillus pleuropneumoniae serovar 7 str. AP76]
gi|307263408|ref|ZP_07545024.1| hypothetical protein appser13_8250 [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
gi|189915206|gb|ACE61458.1| putative primase [Actinobacillus pleuropneumoniae serovar 7 str.
AP76]
gi|306871286|gb|EFN03014.1| hypothetical protein appser13_8250 [Actinobacillus pleuropneumoniae
serovar 13 str. N273]
Length = 600
Score = 141 bits (355), Expect = 5e-31, Method: Composition-based stats.
Identities = 39/235 (16%), Positives = 85/235 (36%), Gaps = 19/235 (8%)
Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPS----QEFLDLVSGYFESEEV 482
+ +G+L+ T + + ++T + E + ++L+ VS +++
Sbjct: 246 DLIAFDNGVLNRNTLEFKPHNRLNWLTACIPHNYDEQATNTPHFDKWLNFVSD--GNQDK 303
Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542
+ L Q F + G GGSGKS N+ G + I+A+ D +
Sbjct: 304 ARNILAALYAILTNRYNWQIFFEVTGKGGSGKSVFANIATLLAGERNTISAKLEDFDNAK 363
Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602
L +++ E ++ N +K ++GGD + + + +
Sbjct: 364 ---------DLEGFEDKTLILCPEQSKYGG-NGGGLKTISGGDLLRVNPKHKKPF-FTKI 412
Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655
+ ++ N+ RR ++ F K + RD +F +K+ +
Sbjct: 413 TALIMLINNEPCRFTERAGGVDRRRVIFDFKKVVPESERDPTFTEKITLEVGGII 467
>gi|9632926|ref|NP_049955.1| putative primase [Streptococcus phage Sfi19]
gi|5524021|gb|AAD44074.1|AF115102_33 orf508 gp [Streptococcus phage Sfi19]
gi|4049997|gb|AAC97924.1| putative primase [Streptococcus phage Sfi19]
Length = 506
Score = 141 bits (355), Expect = 5e-31, Method: Composition-based stats.
Identities = 61/342 (17%), Positives = 122/342 (35%), Gaps = 39/342 (11%)
Query: 419 SDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ---------EF 469
+ D L ++GI D + + + + T VE P
Sbjct: 140 PEYRDVRRFIL-VKNGIYDKRKKKLLSFDYKFINFSTIETELVENAPKPTINGWDVDSWL 198
Query: 470 LDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529
LDL+SG E+++ + + +L G + ++ I + G G GK T LI G +
Sbjct: 199 LDLMSG---DSELVELLWQVIAASLNGNHSYRKSIWLVGNGNDGKGTFQQLISNLVGLKN 255
Query: 530 VINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA-AKIKQMTGGDCMT 588
V + + + L + G ++I + ++ + + G+ ++
Sbjct: 256 VAPLKLNQFSE---------RFGLAIIEGKTVIIGDDVQAGIYVDESSNFNSVVTGEPVS 306
Query: 589 ARLNYGNTYSESPASFTPFIV--PNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQK 646
N Y A F ++ N +N + +RR ++IPF K D ++A K
Sbjct: 307 IEKKGENPY---LAQFKKTVIQSTNAMPVFKNKSNGTYRRIVIIPFKKTFGINDDNWAIK 363
Query: 647 LETKYTLEAKKWFLKGVKAYISKGLDVD---IPEVCLKAKEEERQGTDTYQAWIDDCCDI 703
+ E ++ L + + LD D P+ + +E ++ +T ++++
Sbjct: 364 DDYINRKEVLEYVL-----WKAINLDFDKFSEPKATQERMQEFKEENNTVYKFLNEYLSD 418
Query: 704 GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK 745
+ L Y + E N+ + S L Q
Sbjct: 419 VVSTRIPVRFLWDVYRSWC-HEGNHTIPKKSN--FEKELAQN 457
>gi|73663249|ref|YP_302030.1| primase [Staphylococcus saprophyticus subsp. saprophyticus ATCC
15305]
gi|72495764|dbj|BAE19085.1| putative primase [Staphylococcus saprophyticus subsp. saprophyticus
ATCC 15305]
Length = 780
Score = 141 bits (355), Expect = 5e-31, Method: Composition-based stats.
Identities = 56/353 (15%), Positives = 115/353 (32%), Gaps = 46/353 (13%)
Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ-----EFLDLVSGY-FES 479
+ +G+ + ++ + T + T T +++ + F + +
Sbjct: 422 PHLIPVNNGVFNRKSMKLESFTPKYIFTTKISTNYIDNPKTPVINGWSFDNWLEEVACGD 481
Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539
EV + + +L G ++ I + G G + K + L+ G V + + ++
Sbjct: 482 REVFTLLWQVINDSLNGNYTRKKAIFLVGDGNNAKGSYQTLLTNLIGFDNVASLKVNEFD 541
Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEI-NAAKIKQMTGGDCMTARLNYGNTYS 598
Q L L G +VI + I +++ + GD + + Y
Sbjct: 542 QE---------FKLGVLEGKTLVIGDDVPVGVNIEDSSNFNSVITGDPVLVNIKNKQPYR 592
Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQK-LETKYTLE- 654
+ T N +N RR +++PF+ A + + +K L K LE
Sbjct: 593 TVFRT-TVIQSTNGMPRFKNKTGGTNRRLLIVPFNADFNGAKENPNIKEKYLTDKKVLEY 651
Query: 655 AKKWFLKGVKAYISKGLDVD---IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEES 711
+ L+ + +P K EE Q D + D +
Sbjct: 652 VLHKAI---------NLNFNKFIVPRASAKLLEEYIQDNDPVYDFKVTEFDKWKIDKVPK 702
Query: 712 HSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKR 764
+ Y + E+ L ++ F +R ++K WK +R
Sbjct: 703 AVVYFRYKVFCERGG------------YRALSERKFCKSFERY-LDKSWKVER 742
>gi|153812927|ref|ZP_01965595.1| hypothetical protein RUMOBE_03334 [Ruminococcus obeum ATCC 29174]
gi|149831005|gb|EDM86095.1| hypothetical protein RUMOBE_03334 [Ruminococcus obeum ATCC 29174]
Length = 459
Score = 141 bits (355), Expect = 5e-31, Method: Composition-based stats.
Identities = 49/373 (13%), Positives = 117/373 (31%), Gaps = 26/373 (6%)
Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-SQEFLDLV 473
+ + + + +G + + G + + + P + +L +
Sbjct: 86 LAAYIEDFPPEANKIHLANGTIYI-DGTFIPEKP-DIVRMRLPVNYNPDTPEASTWLSFL 143
Query: 474 SGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
E + +G L+ NK QR + I+G GG GKS + ++ G+
Sbjct: 144 DQLLY-PEDIPTLQEFIGYCLIPSNKGQRMMIIKGNGGEGKSQIGAVLNSLLGSN----- 197
Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM-TGGDCMTARLN 592
+ + + + L + + + + +K + T M
Sbjct: 198 ----MKDGSIGKISENRFARADLEHILLCVDDDMRMEALKQTSYVKSIVTAQGKMDLERK 253
Query: 593 YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETK 650
+Y S + + D ++RR +V+ + A+R D A+K++ K
Sbjct: 254 GKQSYQGWLFSRLLAFSNGDLQALYDRSDGFYRRQLVLTAKEKPADRVDDPYLAEKMK-K 312
Query: 651 YTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD--CCDIGENLW 708
W KG++ + + +E ++ + +++
Sbjct: 313 EAESIFLWAFKGLQRLVRQNFKFTESPRIKANRENVKRDNNNVLEFLESEGYIRFQAEAS 372
Query: 709 EESHSLAKSYSEYREQELNYDRKRISTRTVTLNLK--QKGFIGGIKREKIEKEWKSKRII 766
S L +SY + E+ + + + + Q + +
Sbjct: 373 ASSKELYESYRLWCEEN---SMTALKNCSFSDAMIAVQAKYNLEHCNTIKNSAGRRVWGF 429
Query: 767 KGLKL--KPAFES 777
G+K+ KP++
Sbjct: 430 TGVKVITKPSYTD 442
>gi|268610888|ref|ZP_06144615.1| primase, putative [Ruminococcus flavefaciens FD-1]
Length = 447
Score = 141 bits (354), Expect = 6e-31, Method: Composition-based stats.
Identities = 65/384 (16%), Positives = 121/384 (31%), Gaps = 29/384 (7%)
Query: 398 ENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTG 457
N+ + +EA + + L + Q+G LD+ G + K+ +
Sbjct: 71 RNNLSNRVKSLIEAIKLLC-YNSELPLDEFRIHLQNGTLDV-DGTFTE--KKYFCRNRLN 126
Query: 458 TPFVEGEP----SQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSG 513
+ E ++FL + E E+V + +G L+ + Q+ + I G GG G
Sbjct: 127 VEYKEFIGEAYYPEKFLTFLYDLLEPEDV-ETLQEYLGYCLIPSTRGQKMMFIVGNGGEG 185
Query: 514 KSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI 573
KS + +++ FG ++ L +++ + N +
Sbjct: 186 KSRIGVVLQSIFGKN---------MLTGSFQRIENDRFFRYNLQDKLLMVDDDMQMNALM 236
Query: 574 NAAKIKQM-TGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF 632
+ IK + T + +Y S + + D + RR I++
Sbjct: 237 STGYIKNLITAETPVDVEAKGEQSYQAKLYSRFLCFGNGSPKALYDKTDGFARRLIILTT 296
Query: 633 DKPIANR--DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGT 690
NR D A K + +W G+K I + I E
Sbjct: 297 KPKSENRIDDPFIADKFIAEKEK-IFRWMYDGLKRLIDRKFRFTISNKTKLNISEALSDN 355
Query: 691 DTYQAWIDDCCDI--GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLK--QKG 746
++ DC + + L SYS + + + T LK QK
Sbjct: 356 CNINEFLSDCDIVSFNTDFRVTGAELYSSYSVWC---GDNALTALKRDTFISWLKTNQKK 412
Query: 747 FIGGIKREKIEKEWKSKRIIKGLK 770
++ R KG+K
Sbjct: 413 LGICYDSNILDDRGNRVRGFKGIK 436
>gi|94990320|ref|YP_598420.1| DNA primase [Streptococcus phage 10270.2]
gi|94543828|gb|ABF33876.1| DNA primase [Streptococcus phage 10270.2]
Length = 493
Score = 141 bits (354), Expect = 7e-31, Method: Composition-based stats.
Identities = 52/322 (16%), Positives = 115/322 (35%), Gaps = 30/322 (9%)
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELY--------ITKSTGTPFVEGEPSQEFLDLVS 474
D L ++GI D + + + + + P ++G + +L +
Sbjct: 130 DVRRYIL-VKNGIYDKKNKALLPFDHQFINFSTIETELIPNAPLPTIDGWDVESWL--LD 186
Query: 475 GYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
++++ + V +L G ++ I G G GK T +I G + V +
Sbjct: 187 LMSGDKDLVQLLWQVVAASLNGNYSYRKSIWFVGDGNDGKGTFQQMISNLVGFKNVAPLK 246
Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAA-KIKQMTGGDCMTARLNY 593
+ + L + G ++I + ++ + + G+ ++
Sbjct: 247 LNQFSE---------RFGLAIIEGKTVIIGDDVQAGIYVDESSNFNSVVTGEPVSIEKKG 297
Query: 594 GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTL 653
N Y + T N +N + +RR I+IPF K ++ + ++A K +
Sbjct: 298 ENPY-MAIFKKTVIQSTNGMPVFKNKSNGTYRRIIIIPFKKTFSSAEDNWAIKDDYINRK 356
Query: 654 EAKKWFLKGVKAYISKGLDVD---IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEE 710
E ++ L + S LD D P+V E ++ +T ++++ + E+
Sbjct: 357 EVLEYVL-----WKSINLDFDKFYEPKVTQDRMREFKEENNTILKFLNEYLEDVESTRLP 411
Query: 711 SHSLAKSYSEYREQELNYDRKR 732
L Y + + K+
Sbjct: 412 VRFLWDVYQSWCTENGVTKPKK 433
>gi|218132428|ref|ZP_03461232.1| hypothetical protein BACPEC_00287 [Bacteroides pectinophilus ATCC
43243]
gi|217992766|gb|EEC58768.1| hypothetical protein BACPEC_00287 [Bacteroides pectinophilus ATCC
43243]
Length = 414
Score = 140 bits (353), Expect = 8e-31, Method: Composition-based stats.
Identities = 46/363 (12%), Positives = 112/363 (30%), Gaps = 24/363 (6%)
Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ-EFLDLV 473
+ +G L L G + + + P+ +L+ +
Sbjct: 36 LEAQVPDFPPEQDRIHVFNGTL-LLNGTFTEGRPA-IVRSRLPVVYNPDAPAPVIWLNFL 93
Query: 474 SGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
+G E + +G L+ NK QR + I+G GG GKS + ++ FG
Sbjct: 94 NGLL-HAEDIPTLQEFIGYCLIPSNKGQRMMVIKGNGGEGKSQIGAVLSAIFGTN----- 147
Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM-TGGDCMTARLN 592
+ + + + L + + + +K + T M
Sbjct: 148 ----MKDGNIGKISENRFARADLEHILLCVDDDMRMEALRQTNYVKSIVTAQGKMDLERK 203
Query: 593 YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETK 650
+Y + + + D ++RR +V+ + +R D A+K++ +
Sbjct: 204 GKQSYQGWMFARLLAFSNGDLQALYDRSDGFYRRQLVLTTKEKPVDRADDPDLAEKMKAE 263
Query: 651 YTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD--CCDIGENLW 708
W +G++ ++ + + + +E ++ + +++ +
Sbjct: 264 AE-GIFLWAFEGLQRLVANNFKLTESDRIRENREAVKRDNNNIFDFMESEGYIRRKADAS 322
Query: 709 EESHSLAKSYSEYREQELNYDRKRISTRTVTLNLK--QKGFIGGIKREKIEKEWKSKRII 766
S + Y + E+ + R+ + + K F +
Sbjct: 323 ISSKEFYEIYRMWCEEN---SLAPLKARSFSDAMIANAKKFNLEHCNNITNSAGRRVWGF 379
Query: 767 KGL 769
G+
Sbjct: 380 MGV 382
>gi|329729096|gb|EGG65507.1| nucleoside triphosphatase, D5 family [Staphylococcus epidermidis
VCU144]
Length = 499
Score = 140 bits (352), Expect = 1e-30, Method: Composition-based stats.
Identities = 59/376 (15%), Positives = 133/376 (35%), Gaps = 47/376 (12%)
Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDL-VSGYFE-----S 479
+ +G+ + +T Q + T T +++ F D ++ +F+
Sbjct: 136 PYLIPVNNGVFNRKTKQLENFSPNYVFTSKIDTNYIDNPNKPTFDDWDINKWFDELACND 195
Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539
++V + + +L G ++ I + G G +GK T L+ G + + + ++
Sbjct: 196 KQVSHLLWQVINDSLNGNYTRKQSIFMVGDGNNGKGTFQELLTNLIGKKNIATLKVNEF- 254
Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAA-KIKQMTGGDCMTARLNYGNTYS 598
+ L G VI + I+ K + GD ++ +Y+
Sbjct: 255 --------DHRFKMSLLEGKTAVIGDDVPVGVYIDDGSNFKSVVTGDYVSVEFKNQQSYT 306
Query: 599 ESPASFTPFIV--PNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAK 656
A F ++ N ++ +A ++R +++PF+ D +K++ +Y K
Sbjct: 307 ---AQFRCSVIQSSNGMPRFKDKTNAVFKRLVIVPFNADFKG-DKE-KRKIKDEY---IK 358
Query: 657 KWFLKGVKAYISKGLD---VDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHS 713
+ Y + +D IP+V K + +Q + + + D + +
Sbjct: 359 NKQVLEYILYHAIRMDFEKFSIPDVSKKYLDVYKQENNPVYEFKINVFDEWKLRKIPKYI 418
Query: 714 LAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773
+ Y E+ + L + F K + EWKS + +
Sbjct: 419 VYGLYKEFCKDNG------------YNFLSKIKFHKEFK-TYLGDEWKSDTVD-----RF 460
Query: 774 AFESVDDNSNIIDFKR 789
++ + D +D K+
Sbjct: 461 NWQDLIDGIGDLDVKK 476
>gi|319788914|ref|YP_004090229.1| hypothetical protein Rumal_3920 [Ruminococcus albus 7]
gi|315450781|gb|ADU24343.1| hypothetical protein Rumal_3920 [Ruminococcus albus 7]
Length = 425
Score = 140 bits (352), Expect = 1e-30, Method: Composition-based stats.
Identities = 65/385 (16%), Positives = 129/385 (33%), Gaps = 35/385 (9%)
Query: 402 AKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFV 461
+K Q ++A +++ + + + F+ Q+G LDL+ G P +E T +
Sbjct: 58 SKKVVQIMDALRLYTYS-EPIPPDMNFIHVQNGKLDLQ-GNFY-PNREF-CTNRLNICYD 113
Query: 462 EGEP-----SQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKST 516
++F+ + E+V+ +G L+ K Q+ + + G GG GKS
Sbjct: 114 PNIRNGAYYPEQFMTFLLELLTPEDVVT-LQEYLGYLLIPSTKGQKMMFLIGQGGEGKSR 172
Query: 517 LMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAA 576
+ +++ F + ++ L ++I + +
Sbjct: 173 IGIVLREIFRDN---------MLTGNIHRIETDRFFRYNLKDRLLMIDDDMQMQALSSTG 223
Query: 577 KIKQM-TGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV-RNPDDAWWRRYIVIPFDK 634
IK + T + G ++ N + + RR I++
Sbjct: 224 YIKNLVTAETPIDVEAK-GKQSEQALLYTRLLCFGNGSPKTLYDKSKGFSRRMIILT-TL 281
Query: 635 PIANR---DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTD 691
P R D A+K + W G+ ++ I + + E Q
Sbjct: 282 PPPERRIIDPYIAEKFIAEKEK-IFCWMYDGLLRLLANNYRFTISDRARQNVMETMQDNC 340
Query: 692 TYQAWIDDCCDI--GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK--GF 747
+++D + GE L S +L SY + + + T T +KQ F
Sbjct: 341 NITEFLEDTDRVMYGEKLCVSSAALYDSYYRWCDDN---ALTALKRDTFTSWVKQNSDQF 397
Query: 748 IGGIKREKIEKEWKSKRIIKGLKLK 772
I K+ R +G+ +K
Sbjct: 398 SIKYTNN-ISVGGKTVRGFRGIAIK 421
>gi|295105113|emb|CBL02657.1| phage/plasmid primase, P4 family, C-terminal domain
[Faecalibacterium prausnitzii SL3/3]
Length = 439
Score = 140 bits (352), Expect = 1e-30, Method: Composition-based stats.
Identities = 49/363 (13%), Positives = 114/363 (31%), Gaps = 24/363 (6%)
Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ-EFLDLV 473
+ + + + +G L L+ + E + + P +L +
Sbjct: 78 LAAQVEDFPPVTDRIALANGTLHLDD-TFQEGKPE-IVRNRLPVRYDPKAPQPVHWLRFL 135
Query: 474 SGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
S E + +G L+ NK QR + I+G GG GKS + ++ FG
Sbjct: 136 SDLLY-PEDIPTVQEFIGYCLIPSNKGQRMMVIKGSGGEGKSQIGVVLSQLFGCN----- 189
Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM-TGGDCMTARLN 592
+ + + + L + + + + +K + T M
Sbjct: 190 ----MKDGSIGKISENRFARADLEHTLLCVDDDMRMEALRQTNYVKSIVTAQGQMDLERK 245
Query: 593 YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETK 650
+Y + + + D ++RR +++ +R D A+K+ +
Sbjct: 246 GKQSYQGWMYARLLAFSNGDLQALYDRSDGFYRRQLILTTKDKPLSRVDDPDIAEKMAAE 305
Query: 651 YTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD--CCDIGENLW 708
W +G++ + G + + +E ++ + +++ + +
Sbjct: 306 -VEGILLWAFEGLQRLVKNGFQFTESDRAKRNRELVKRDNNNVFDFLESEGYIRLKADAC 364
Query: 709 EESHSLAKSYSEYREQELNYDRKRISTRTVTLNLK--QKGFIGGIKREKIEKEWKSKRII 766
S L + Y + E+ I R + L Q + + + R
Sbjct: 365 TSSKELYEVYKMWCEEN---SLNAIKARGFSDALIANQSRYNLESTNNIVNSSGRRVRGF 421
Query: 767 KGL 769
G+
Sbjct: 422 VGI 424
>gi|299782824|gb|ADJ40822.1| DNA primase [Lactobacillus fermentum CECT 5716]
Length = 522
Score = 139 bits (351), Expect = 1e-30, Method: Composition-based stats.
Identities = 67/455 (14%), Positives = 153/455 (33%), Gaps = 42/455 (9%)
Query: 334 YKKDKNNVYIWSLTLDKITASIM--NFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDY 391
Y+K+ + +T M + E V +++ E + + +P + D
Sbjct: 43 YRKENTRTVHHQDGTESVTTKRMPARMIADRIEAVASIAKLGETDRELESAPLVLYVPD- 101
Query: 392 RRQNVEENSKAKSTAQSLEAGSIFSITSD---LLD---------SSSRFLGEQDGILDLE 439
R ++ + +LE ++ LLD SS + +GI + +
Sbjct: 102 RGIYTHSTARVRRMILALEPACTIKARNEVEWLLDGEATAKAPESSPSLIPVGNGIYNTD 161
Query: 440 TGQKVKPTKELYITKSTGTPFVEGEPSQEFL-----DLVSGYFESEEV-MDYFTRCVGMA 493
+G+ T E+ T T + F D V+ + +E + +
Sbjct: 162 SGEFQPFTPEIVFTSKIATNYNPNATEPSFNGWKFSDWVNELAQGDEAKRTLIWQMIASI 221
Query: 494 LLGGNKAQRFIHIR--GVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANP 551
+ + A F G G +GKSTL L+ G + + + +
Sbjct: 222 VKNRDTANVFFAFVDNGQGRTGKSTLEQLLMNLVGKDNYTSLKLDEF---------GHDF 272
Query: 552 SLIRLMGSRIVIISE-TNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVP 610
L G+R++I + + + + +K + + + ++ + T
Sbjct: 273 KLANAYGARLIIGDDNEPKGFIDDGSNLKSIVTNETVLLNPKGAKPFT-AKFFATVVQSM 331
Query: 611 NKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKG 670
N R+ +RR+ ++ F K + A K + Y + +W LK KA
Sbjct: 332 NGVPTFRDKSGGLYRRFRMLNFPKQYPDTPAGKRIKNDYIYDRQLLEWILK--KALEVDV 389
Query: 671 LDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDR 730
+ + + + R D ++++ ++ ++ L + + +
Sbjct: 390 TTIIDTKESQELVYDTRLDNDPVLYFVEEVVGQLKSTRVPTNFLFNLFCAFMKA--ENSP 447
Query: 731 KRISTRTVTLN----LKQKGFIGGIKREKIEKEWK 761
++ R+ T ++++G+ K K +
Sbjct: 448 TKLKQRSFTKQVRPYMERRGWKYDNKNLTASKYFN 482
>gi|27383370|ref|NP_774899.1| hypothetical protein bll8259 [Bradyrhizobium japonicum USDA 110]
gi|27356545|dbj|BAC53524.1| bll8259 [Bradyrhizobium japonicum USDA 110]
Length = 223
Score = 139 bits (351), Expect = 1e-30, Method: Composition-based stats.
Identities = 42/213 (19%), Positives = 81/213 (38%), Gaps = 21/213 (9%)
Query: 11 KQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLP-----ACGFGFVCGVGEQPL 65
+ I G++ + + +G W+ S+ +++ + A G +CG L
Sbjct: 13 RSLIAYGYRPV---ACSGKAAVMGNWQRSRWSAAQMEGIARNYPDATNTGLLCG----EL 65
Query: 66 YAFDIDSKDEKTANTFKDTFEILHGT--PIVRIGQKPKILIPFRMNKEGIKKKKTTESTQ 123
D+D+ D +TA+ + L G+ R+G+ PK L FR + K+
Sbjct: 66 VGLDVDTPDAETADAIRAMVMELPGSDRAPYRMGKAPKTLFAFRATEPREKRATGAYLIN 125
Query: 124 G---HLDILGCGQYFVAYNIHPKTKKEYTW-TTPPHRFKVEDTPLLSEEDVEYLFKFFQE 179
G ++ G FVA+ HP T + Y W P + + P ++ E ++ L +
Sbjct: 126 GAKCQVEAFGERTQFVAFGTHPDTGRPYEWFNGSPAETPLAELPEITPEAIDELLARAEA 185
Query: 180 ITVPLVKDKKSIIPSKTWTNNNNRQYTNREITA 212
+ I P+ ++ + A
Sbjct: 186 Y---FAERGTLIKPASKASDRGPVVVDSDHPWA 215
>gi|145632692|ref|ZP_01788426.1| phage DNA primase-like protein [Haemophilus influenzae 3655]
gi|144986887|gb|EDJ93439.1| phage DNA primase-like protein [Haemophilus influenzae 3655]
Length = 589
Score = 139 bits (351), Expect = 2e-30, Method: Composition-based stats.
Identities = 65/420 (15%), Positives = 144/420 (34%), Gaps = 58/420 (13%)
Query: 369 LSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRF 428
+ E+++ K+ +F ++ +S + ++L+A + + S
Sbjct: 186 TWNKQENDDLEEKAVKFLDENEFN----YSDSTIERLIKTLKAQ-----LPRMGEMSKDL 236
Query: 429 LGEQDGILDLETGQKVKPTKELYITKSTGTPFV----EGEPSQEFLDLVSGYFESEEVMD 484
+ ++G+L+ T + ++ ++T + + ++L VS ++E
Sbjct: 237 IAFENGVLNRNTMEFESHNRQNWLTSCIPHKYDKHVTDTPHFDKWLSFVSD--GNKEKAR 294
Query: 485 YFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544
+ L Q F I G GGSGKS ++ G + ++ R
Sbjct: 295 NILAVLYAILTNRYNWQMFFEITGKGGSGKSVFASIATLLAGVKNTASSNLEKFDDERGL 354
Query: 545 EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604
L +++ E ++ +++ +K +TGGD + R NY + + +
Sbjct: 355 SG---------LENKTLILCPEQSKYAG-DSSGLKSITGGDTVRVRYNYQDPFDVKITA- 403
Query: 605 TPFIVPNKHL-FVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLK 661
++ N RR ++ F K + RD F K+ +
Sbjct: 404 -LVMLINNRPCSFTERSGGVDRRRVIFDFKKIVPEDERDPHFMDKITLEVGGII------ 456
Query: 662 GVKAYISKGLDVDIPEVCLKAKEEERQG------TDTYQAWI--------DDCCDIGE-- 705
+ D + + LKA+ E ++ +D + D IG
Sbjct: 457 --RKVFDSFPDPNDAKKALKAQMESQEALEVKKLSDPLTDFFGYFYTTEQTDGLFIGVTN 514
Query: 706 -NLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKR 764
L + L +Y Y + + + + ++Q G K + +++ K+ R
Sbjct: 515 MGLDKIRTHLYPAYLAYTKA---MNIGELGLNNFVIGVEQALKQNGNKHDFMKRHTKTGR 571
>gi|317056910|ref|YP_004105377.1| hypothetical protein Rumal_2258 [Ruminococcus albus 7]
gi|315449179|gb|ADU22743.1| hypothetical protein Rumal_2258 [Ruminococcus albus 7]
Length = 457
Score = 139 bits (351), Expect = 2e-30, Method: Composition-based stats.
Identities = 65/385 (16%), Positives = 129/385 (33%), Gaps = 35/385 (9%)
Query: 402 AKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFV 461
+K Q ++A +++ + + + F+ Q+G LDL+ G P +E T +
Sbjct: 90 SKKVVQIMDALRLYTYS-EPIPPDMNFIHVQNGKLDLQ-GNFY-PNREF-CTNRLNICYD 145
Query: 462 EGEP-----SQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKST 516
++F+ + E+V+ +G L+ K Q+ + + G GG GKS
Sbjct: 146 PNIRNGAYYPEQFMTFLLELLTPEDVVT-LQEYLGYLLIPSTKGQKMMFLIGQGGEGKSR 204
Query: 517 LMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAA 576
+ +++ F + ++ L ++I + +
Sbjct: 205 IGIVLREIFRDN---------MLTGNIHRIETDRFFRYNLKDRLLMIDDDMQMQALSSTG 255
Query: 577 KIKQM-TGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV-RNPDDAWWRRYIVIPFDK 634
IK + T + G ++ N + + RR I++
Sbjct: 256 YIKNLVTAETPIDVEAK-GKQSEQALLYTRLLCFGNGSPKTLYDKSKGFSRRMIILT-TL 313
Query: 635 PIANR---DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTD 691
P R D A+K + W G+ ++ I + + E Q
Sbjct: 314 PPPERRIIDPYIAEKFIAEKEK-IFCWMYDGLLRLLANNYRFTISDRARQNVMETMQDNC 372
Query: 692 TYQAWIDDCCDI--GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK--GF 747
+++D + GE L S +L SY + + + T T +KQ F
Sbjct: 373 NITEFLEDTDRVMYGEKLCVSSAALYDSYYRWCDDN---ALTALKRDTFTSWVKQNSDQF 429
Query: 748 IGGIKREKIEKEWKSKRIIKGLKLK 772
I K+ R +G+ +K
Sbjct: 430 SIKYTNN-ISVGGKTVRGFRGIAIK 453
>gi|307261229|ref|ZP_07542904.1| hypothetical protein appser12_7930 [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
gi|306868960|gb|EFN00762.1| hypothetical protein appser12_7930 [Actinobacillus pleuropneumoniae
serovar 12 str. 1096]
Length = 600
Score = 139 bits (351), Expect = 2e-30, Method: Composition-based stats.
Identities = 39/235 (16%), Positives = 85/235 (36%), Gaps = 19/235 (8%)
Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPS----QEFLDLVSGYFESEEV 482
+ +G+L+ T + + ++T + E + ++L+ VS +++
Sbjct: 246 DLIAFDNGVLNRNTLEFKPHNQLNWLTACIPHNYDEQATNTPYFDKWLNFVSD--GNQDK 303
Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542
+ L Q F + G GGSGKS N+ G + I+A+ D +
Sbjct: 304 ARNILAALYAILTNRYNWQIFFEVTGKGGSGKSVFANIATLLAGERNTISAKLEDFDNAK 363
Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602
L +++ E ++ N +K ++GGD + + + +
Sbjct: 364 ---------DLEGFEDKTLILCPEQSKYGG-NGGGLKTISGGDLLRVNPKHKKPF-FTKI 412
Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655
+ ++ N+ RR ++ F K + RD +F +K+ +
Sbjct: 413 TALIMLINNEPCRFTERAGGVDRRRVIFDFKKVVPESERDPTFTEKITLEVGGII 467
>gi|66391797|ref|YP_238521.1| primase [Streptococcus phage 2972]
gi|56718454|gb|AAW27960.1| primase [Streptococcus phage 2972]
Length = 505
Score = 139 bits (350), Expect = 2e-30, Method: Composition-based stats.
Identities = 61/342 (17%), Positives = 123/342 (35%), Gaps = 39/342 (11%)
Query: 419 SDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ---------EF 469
+ D L ++GI D + + + + + T VE P
Sbjct: 138 PEYRDVRRFIL-VKNGIYDKKKKKLLSFDYKFINFSTIETELVENAPKPTINGWDVDSWL 196
Query: 470 LDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529
LDL+SG E+++ + + +L G + ++ I + G G GK T LI G +
Sbjct: 197 LDLMSG---DSELVELLWQVIAASLNGNHSYRKSIWLVGNGNDGKGTFQQLISNLVGLKN 253
Query: 530 VINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA-AKIKQMTGGDCMT 588
V + + + L + G ++I + ++ + + G+ ++
Sbjct: 254 VAPLKLNQFSE---------RFGLAIIEGKTVIIGDDVQAGIYVDESSNFNSVVTGEPVS 304
Query: 589 ARLNYGNTYSESPASFTPFIV--PNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQK 646
N Y A F ++ N +N + +RR ++IPF K D ++A K
Sbjct: 305 IEKKGENPY---LAQFKKTVIQSTNAMPVFKNKSNGTYRRIVIIPFKKTFGINDDNWAIK 361
Query: 647 LETKYTLEAKKWFLKGVKAYISKGLDVD---IPEVCLKAKEEERQGTDTYQAWIDDCCDI 703
+ E ++ L + + LD D P+ + +E ++ +T ++++
Sbjct: 362 DDYINRKEVLEYVL-----WKAINLDFDKFNEPKATQERMQEFKEENNTVYKFLNEYLSD 416
Query: 704 GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK 745
+ L Y + E N+ + S L Q
Sbjct: 417 VVSTRIPVRFLWDVYRSWC-HEGNHTIPKKSN--FEKELAQN 455
>gi|227544975|ref|ZP_03975024.1| DNA primase [Lactobacillus reuteri CF48-3A]
gi|300909992|ref|ZP_07127452.1| DNA primase [Lactobacillus reuteri SD2112]
gi|227185036|gb|EEI65107.1| DNA primase [Lactobacillus reuteri CF48-3A]
gi|300892640|gb|EFK86000.1| DNA primase [Lactobacillus reuteri SD2112]
Length = 522
Score = 139 bits (350), Expect = 2e-30, Method: Composition-based stats.
Identities = 45/341 (13%), Positives = 112/341 (32%), Gaps = 28/341 (8%)
Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ------- 467
+ ++ S + +GI D E + + + T T +V+ + +
Sbjct: 146 IEAPTKSINKSINLVPVGNGIFDKENKKLLPFNPKYVFTSKVATKYVDNDIPEPTYNGWT 205
Query: 468 --EFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIR--GVGGSGKSTLMNLIKY 523
++++ +S E+ + + + + + G G +GKST L+
Sbjct: 206 FSKWIEELSN--GGEDKATLLWQMIASVIQNRRTSNVLFCLIDNGEGRTGKSTFEALLMN 263
Query: 524 AFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISE-TNENDEINAAKIKQMT 582
G + + + L + G+ ++I + + N + +K +
Sbjct: 264 LVGKNNYTALKLEEF---------DHSFLLAQAYGASLIIGDDNDPKGYIDNGSTLKSIV 314
Query: 583 GGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDAS 642
+ + +S + T N ++ + +RR+ +I F+ +
Sbjct: 315 TNELVLINPKGQRPFS-AKFYCTIVQSMNGFPRFKDTSNGLYRRFRLIQFNHQYPDTPDG 373
Query: 643 FAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCD 702
K E +W LK KA + +A + + D +++++
Sbjct: 374 RKVKDEYVKDQRLLQWILK--KALQVNIDTIINTRESQEAVNDLQLENDIVLSFVNEVVP 431
Query: 703 IGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLK 743
E+ L + +Y + + ++ T T +K
Sbjct: 432 NLESTRIPIALLFALFRKYVDDNN--SKNGMTRATFTRRIK 470
>gi|239622967|ref|ZP_04665998.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239522619|gb|EEQ62485.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 450
Score = 139 bits (350), Expect = 2e-30, Method: Composition-based stats.
Identities = 56/385 (14%), Positives = 125/385 (32%), Gaps = 32/385 (8%)
Query: 398 ENSKAKSTAQSLEAGSIFSITSDLL---DSSSRFLGEQDGILDLETGQKVKPTKELYITK 454
++ AK L+ + +DLL D + +G L G T++ Y
Sbjct: 81 TSNIAKRVTNLLDVMRMECCAADLLLYQDR----IHVANGTYHL-DGTFS--TEKDYCRN 133
Query: 455 STGTPFVEGEPSQ-EFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSG 513
+ P +L +S E E+++ +G + K Q+ + + G GG G
Sbjct: 134 RLPVAYHPEAPQPVTWLHFLSQLLEPEDILT-LQEFIGYCFIPSTKGQKMLMLTGKGGEG 192
Query: 514 KSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI 573
KS + +++ G + + +N + L +++ +
Sbjct: 193 KSRIGVVLRALLGTN---------MKTGSVAKVETSNFARADLEHELLMLDDDMKLEALP 243
Query: 574 NAAKIKQMTGGD-CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF 632
IK + + M +Y + + + ++RR I++
Sbjct: 244 QTNNIKAIITAELPMDLERKRQQSYQGDLYVRFIGLGNGVLQALHDRSVGFFRRQIILTT 303
Query: 633 DKPIANR--DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGT 690
+ NR D A+K+ + W L+G+ I+ + + L +
Sbjct: 304 KEKDPNRKDDPYIAEKMTAEAE-GIFLWALEGLHRLIANDFRFTLSQSALDNLNDAVSDG 362
Query: 691 DTYQAWI--DDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK--G 746
+ ++ + + S +L Y ++ + +S ++ LKQ
Sbjct: 363 NNIIDFLASEGYIRFRADYEASSKNLYAVYKQWCDDNALNS---LSQKSFGSFLKQNESR 419
Query: 747 FIGGIKREKIEKEWKSKRIIKGLKL 771
+ + + R G++L
Sbjct: 420 YNLEYTNKVNIGGGRFARGFVGIEL 444
>gi|291556152|emb|CBL33269.1| phage/plasmid primase, P4 family, C-terminal domain [Eubacterium
siraeum V10Sc8a]
Length = 457
Score = 139 bits (350), Expect = 2e-30, Method: Composition-based stats.
Identities = 47/363 (12%), Positives = 110/363 (30%), Gaps = 24/363 (6%)
Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE-FLDLV 473
+ +G L L G + + + P+ E + + +
Sbjct: 85 LEAQVPDFPPEQDRIHLSNGTL-LLDGTFTEGRPA-IVRSRLPVAYNPNAPAPEIWQNFL 142
Query: 474 SGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
G E + +G L+ NK QR + I+G GG GKS + ++ FG
Sbjct: 143 DGLL-HAEDIPTLQEFIGYCLIPSNKGQRMMVIKGNGGEGKSQIGAVLSSIFGTN----- 196
Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM-TGGDCMTARLN 592
+ + + + L + + + +K + T M
Sbjct: 197 ----MKDGSIGKISENRFARADLEHILLCVDDDMRMEALRQTNYVKSIVTAQGKMDLERK 252
Query: 593 YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETK 650
+Y + + + D ++RR +V+ + NR D A+K++ +
Sbjct: 253 GKQSYQGWMFARLLAFSNGDLQALYDRSDGFYRRQLVLTTKERPVNRADDPDLAEKMKAE 312
Query: 651 YTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD--CCDIGENLW 708
W L+G++ ++ + + +E ++ + +++ +
Sbjct: 313 AE-GIFLWALEGLRRLVASNFKFTESDRIRENREAVKRDNNNIFDFMESEGYIRRKADAS 371
Query: 709 EESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG--FIGGIKREKIEKEWKSKRII 766
S + Y + E+ + R+ + + F +
Sbjct: 372 ISSKDFYEIYRMWCEEN---SLAPLKARSFSDAMIANAGRFNLEHCNNITNSAGRRVWGF 428
Query: 767 KGL 769
G+
Sbjct: 429 MGV 431
>gi|293400200|ref|ZP_06644346.1| putative primase [Erysipelotrichaceae bacterium 5_2_54FAA]
gi|291306600|gb|EFE47843.1| putative primase [Erysipelotrichaceae bacterium 5_2_54FAA]
Length = 433
Score = 139 bits (350), Expect = 2e-30, Method: Composition-based stats.
Identities = 55/380 (14%), Positives = 119/380 (31%), Gaps = 31/380 (8%)
Query: 397 EENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKST 456
+ + ++ + I +D + +G G Y
Sbjct: 70 KTVANLLASIKLQAYSPPLPIETDR-------IHVANGTY-FMDGSFSTDR--SYCNNRL 119
Query: 457 GTPFVEGEPSQE-FLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKS 515
+ P+ + +L +S + E + +G LL K Q+ + + G GG GKS
Sbjct: 120 TVTYNPDAPTPKKWLQFLSELLQ-PEDIPTLQEFLGYCLLPTTKGQKMLMLIGKGGEGKS 178
Query: 516 TLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA 575
+ +I+ G+ + + I + S L +++ + + +
Sbjct: 179 RIGLVIRSLLGD----SMNTTSI-----QKVESNRFSRADLENKLLMVDDDMDMSALPKT 229
Query: 576 AKIKQMTGGD-CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK 634
IK + + M +Y + + D ++RR IV+
Sbjct: 230 NYIKSIVTSECKMDMERKGVQSYQSQLYVRFLCFGNGALTALHDKSDGFFRRQIVLTTKD 289
Query: 635 PIANR--DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDT 692
A R D KL + W L+G+ I I + E ++ ++
Sbjct: 290 RPAGRADDPFLVDKLLRE-KEGIFLWCLEGLHRLIGNNYQFSISGKAKENMETVKRSSNN 348
Query: 693 YQAWI--DDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK-GFIG 749
++ + + S ++ ++Y+ + + +K +S V+ L Q
Sbjct: 349 VIEFLQSEGYIRFRADSEASSKAIYEAYTRWCDDN---AQKPMSANRVSSELAQNERLYN 405
Query: 750 GIKREKIEKEWKSKRIIKGL 769
+ K R G+
Sbjct: 406 VEATNNVHVGGKRVRGFMGI 425
>gi|283795092|ref|ZP_06344245.1| phage/plasmid primase, P4 family protein [Clostridium sp. M62/1]
gi|291076734|gb|EFE14098.1| phage/plasmid primase, P4 family protein [Clostridium sp. M62/1]
Length = 431
Score = 139 bits (349), Expect = 2e-30, Method: Composition-based stats.
Identities = 54/377 (14%), Positives = 120/377 (31%), Gaps = 31/377 (8%)
Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTP 459
+ ++ + I +D + +G G + Y
Sbjct: 71 TNLLASIKLQAYSPPLPIETDR-------IHVANGTY-FMDGSFT--ADKSYCNNRLTVA 120
Query: 460 FVEGEPSQE-FLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLM 518
+ P+ + +L +S + E + +G LL K Q+ + + G GG GKS +
Sbjct: 121 YNPNAPAPKKWLQFLSELLQ-PEDIPTLQEFLGYCLLPTTKGQKMLMLIGKGGEGKSRIG 179
Query: 519 NLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKI 578
+++ G+ + + I + S L +++ + + + I
Sbjct: 180 LVMRSLLGD----SMNTTSI-----QKVESNRFSRADLENKLLMVDDDMDMSALPKTNYI 230
Query: 579 KQMTGGD-CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637
K + + M +Y + + D ++RR IV+ A
Sbjct: 231 KSIVTSECKMDMERKGVQSYQSQLYVRFLCFGNGALTALHDKSDGFFRRQIVLTTKDRPA 290
Query: 638 NR--DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQA 695
R D KL + W L+G++ I I + E ++ ++
Sbjct: 291 GRADDPFLVDKLLRE-KEGIFLWCLEGLRRLIGNNYQFSISGKARENMETVKRSSNNVIE 349
Query: 696 WI--DDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK-GFIGGIK 752
++ + + S ++ ++Y+ + + +K +S V+ L Q
Sbjct: 350 FLQSEGYIRFRADSEASSKAIYEAYTRWCDDN---AQKPMSANRVSSELAQNERLYNVEA 406
Query: 753 REKIEKEWKSKRIIKGL 769
+ K R G+
Sbjct: 407 TNNVHVGGKRVRGFMGI 423
>gi|237744355|ref|ZP_04574836.1| phage/plasmid primase [Fusobacterium sp. 7_1]
gi|229431584|gb|EEO41796.1| phage/plasmid primase [Fusobacterium sp. 7_1]
Length = 457
Score = 139 bits (349), Expect = 2e-30, Method: Composition-based stats.
Identities = 47/365 (12%), Positives = 128/365 (35%), Gaps = 28/365 (7%)
Query: 423 DSSSRFLGEQDGILDLETGQ--KVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESE 480
+ + ++G++++ + + T ++ T + + L+ +S +
Sbjct: 109 EKDINHISVKNGLINITDDEIVLYEHTSKIVTTFYIDYDYNPNADYTDILNYMSELVGDD 168
Query: 481 E-VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539
E + +G L ++ + I+G +GKS + ++K FG+ + + DI+
Sbjct: 169 ESLTRILMEFLGYCLYPDCFLRKALVIKGDHRNGKSKFLEVLKIFFGDNNCCSLDIQDIV 228
Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599
L +M I + + + + +K K++ G+ + + ++
Sbjct: 229 S---------RFGLFGIMNKSINLGDDISGQYIGDDSKFKKVVAGNDVLIEQKGKDAFTY 279
Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKY-----TLE 654
P + N + A R I IPF + + + + +
Sbjct: 280 KP-TAKHIFSCNNMPRFDDKTGAVKDRLIFIPFPNVYSVENGNLNPHIVKEMTTNENMES 338
Query: 655 AKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHS- 713
L+ +K + +E + + +I++ + L +++ +
Sbjct: 339 LLVLALQSLKELLKNN-KFTYSYKSENCLDEFDKDKNPILYFIEEIQE-NSYLRDKAFNN 396
Query: 714 --LAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771
+A++Y +Y + K I+ + ++K IK ++ + ++ K ++
Sbjct: 397 MPVAEAYDKYINFCQSNGFKAITKINFSKSIKAN-----IKNIDVKPYKNNGKVNKVFRI 451
Query: 772 KPAFE 776
E
Sbjct: 452 LDQQE 456
>gi|148988895|ref|ZP_01820310.1| DNA primase [Streptococcus pneumoniae SP6-BS73]
gi|147925706|gb|EDK76782.1| DNA primase [Streptococcus pneumoniae SP6-BS73]
Length = 496
Score = 139 bits (349), Expect = 3e-30, Method: Composition-based stats.
Identities = 46/287 (16%), Positives = 92/287 (32%), Gaps = 25/287 (8%)
Query: 422 LDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ---------EFLDL 472
LD R++ +G+ +++T + + + IT T + +L+
Sbjct: 129 LD-DYRYIPVANGVYNIKTHKLEEFSPNFVITSKIQTEYNPCARKPILDGWFDFDRWLEA 187
Query: 473 VSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532
++ +EV+ + + A+ ++ + + G G +GK T L++ G + N
Sbjct: 188 LA--VNDKEVVALLWQVINEAINPNRTRKKMVLMVGDGNNGKGTFQTLLENLIGRSNISN 245
Query: 533 AEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLN 592
+ L L G I + + + + + GD +
Sbjct: 246 LKPDQF---------GKEFYLGALEGKVCNIGDDISNKYLDEVSDLMSVISGDPVQVNKK 296
Query: 593 YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYT 652
E+ N RN W+RR +IPF + K
Sbjct: 297 SLQP-VEARFRLLCIFSGNDLPRARNKTMGWYRRLCIIPFRADFNGQKERHEIKDRFIKN 355
Query: 653 LEAKKWFLKGVKAYISKGLD-VDIPEVCLKAKEEERQGTDTYQAWID 698
E +W L K D PE + + + D + W++
Sbjct: 356 KELLEWVL--FKVLNMPDFDSFIEPEAVKEMLSKYKNDNDYIKVWVE 400
>gi|300723481|ref|YP_003712786.1| putative phage primase [Xenorhabdus nematophila ATCC 19061]
gi|297630003|emb|CBJ90638.1| putative phage primase [Xenorhabdus nematophila ATCC 19061]
Length = 808
Score = 138 bits (348), Expect = 3e-30, Method: Composition-based stats.
Identities = 53/357 (14%), Positives = 115/357 (32%), Gaps = 40/357 (11%)
Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYF-E 478
+G +G+ L T Q E ++ G F + +F +S +
Sbjct: 440 DLIGFSNGVYALSTQQFTPHQPEHWLMNHNGIVFTLPAVGENLPDHAPDFYRWLSHAAGQ 499
Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538
+E MD + M L Q FI + G GGSGKS + G + +
Sbjct: 500 NENKMDRIKAALFMILANRYDWQLFIEVTGEGGSGKSVFTYIATLLAGEHNTASGNMRAL 559
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598
+ R + +G ++ + + + A IK +TGGD + Y +S
Sbjct: 560 DEARGR---------YQFVGKSLITLPDQVKYVG-EGAGIKAITGGDLIEVDGKYEKQFS 609
Query: 599 ESPASFTPFIVPNKHL-FVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655
+ + N + RR ++ PF+ P+ +D +K+ + +
Sbjct: 610 TVIKA--VVLATNNEPMSFTERNGGIARRRVIFPFNIPVKESEKDPQLPEKISRELPVII 667
Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAW------IDDCC-----DIG 704
+ + +K L + + +D + ++D +
Sbjct: 668 RHLLNEFADQNKAKKLLQAQRDSNEALT--VKSHSDPLYRFCGYLVSVNDMTGMKMGNKN 725
Query: 705 ENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQ--KGFIGGIKREKIEKE 759
+ L +Y + E + ++ ++ + + ++ + +K
Sbjct: 726 ISPRAPRLYLYHAYLSFMEAHG--FERPLTLTKFGESIPKIMLEYRKEYRKVRTKKG 780
>gi|237651063|ref|ZP_04525315.1| DNA primase [Streptococcus pneumoniae CCRI 1974]
gi|237821176|ref|ZP_04597021.1| DNA primase [Streptococcus pneumoniae CCRI 1974M2]
Length = 496
Score = 138 bits (347), Expect = 4e-30, Method: Composition-based stats.
Identities = 47/287 (16%), Positives = 93/287 (32%), Gaps = 25/287 (8%)
Query: 422 LDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ---------EFLDL 472
LD R++ +G+ +++T + + + IT T + +L+
Sbjct: 129 LD-DYRYIPVANGVYNIKTHKLEEFSPNFVITSKIQTEYNPCARKPILDGWFDFDRWLEA 187
Query: 473 VSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532
++ +EV+ + + A+ ++ + + G G +GK T +L++ G + N
Sbjct: 188 LA--VNDKEVVALLWQVINEAINPNRTRKKMVLMVGDGNNGKGTFQSLLENLIGRSNISN 245
Query: 533 AEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLN 592
+ L L G I + + + + + GD +
Sbjct: 246 LKPDQF---------GKEFYLGALEGKVCNIGDDISNKYLDEVSDLMSVISGDPVQVNKK 296
Query: 593 YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYT 652
E+ N RN W+RR +IPF + K
Sbjct: 297 SLQP-VEARFRLLCIFSGNDLPRARNKTMGWYRRLCIIPFRADFNGQKERHEIKDRFIKN 355
Query: 653 LEAKKWFLKGVKAYISKGLD-VDIPEVCLKAKEEERQGTDTYQAWID 698
E +W L K D PE K + + D + W++
Sbjct: 356 KELLEWVL--FKVLNMPDFDSFIEPEAVQKMLSKYKNDNDYIKVWVE 400
>gi|228961470|ref|ZP_04123081.1| DNA primase [Bacillus thuringiensis serovar pakistani str. T13001]
gi|228798184|gb|EEM45186.1| DNA primase [Bacillus thuringiensis serovar pakistani str. T13001]
Length = 812
Score = 137 bits (346), Expect = 6e-30, Method: Composition-based stats.
Identities = 60/352 (17%), Positives = 121/352 (34%), Gaps = 31/352 (8%)
Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ-----EFLDLVSGY-FES 479
+ Q+G+ +L+T + T + T T + E + + + V
Sbjct: 450 RYLIPVQNGVFNLKTKKLEPFTADYVFTTKITTRYYEDPVNPILDGWDVVSWVKSIACGD 509
Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539
E+ + + + AL G ++ I + G G +GK T LI G + + + ++
Sbjct: 510 LEIENLLWQVMNDALNGNYSRRKSIFLIGEGNNGKGTFQELIMNLIGMKNIATLKVNEFD 569
Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA-AKIKQMTGGDCMTARLNYGNTYS 598
+ L L G VI + N I+ + + GD ++ Y+
Sbjct: 570 E---------RFRLSVLEGKTAVIGDDVPANVYIDDSSNFNSVVTGDMVSVEFKNRPIYN 620
Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKW 658
+ N +N + RR +++PF + +F K E ++
Sbjct: 621 TV-FRCSVIQSTNGMPKFKNKTNGTIRRIVIVPFQADFNGKTENFKIKDEYIKDERVLQF 679
Query: 659 FLKGVKAYISKGLD---VDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLA 715
L Y + +D DIP+V L+ E +Q D + D + +
Sbjct: 680 VL-----YRAINMDFETFDIPKVSLQELEVFKQDNDPVLDFKLSIFDEWGIQEVPKYIVY 734
Query: 716 KSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIK 767
Y ++ K ++ R ++ G + E + ++ +IK
Sbjct: 735 GFYKKFCMDNG---YKYLADRQFYKQFRR---YLGEEWEDSQNRFRYDSLIK 780
>gi|291562404|emb|CBL41220.1| phage/plasmid primase, P4 family, C-terminal domain
[butyrate-producing bacterium SS3/4]
Length = 463
Score = 137 bits (346), Expect = 6e-30, Method: Composition-based stats.
Identities = 46/363 (12%), Positives = 109/363 (30%), Gaps = 24/363 (6%)
Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ-EFLDLV 473
+ +G L L G + + + P+ +L +
Sbjct: 85 LEAQVPDFPPEQDRIHLSNGTL-LLNGTFTEGRP-TIVRNRLPVVYNPHAPTPVTWLKFL 142
Query: 474 SGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
G E + +G L+ NK QR + I+G GG GKS + ++ FG
Sbjct: 143 DGLL-HAEDIPTLQEFIGYCLIPSNKGQRMMVIKGNGGEGKSQIGAVLSTIFGTN----- 196
Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM-TGGDCMTARLN 592
+ + + + L + + + +K + T M
Sbjct: 197 ----MKDGSIGKISENRFARADLEHILLCVDDDMRMEALRQTNYVKSIVTAQGKMDLERK 252
Query: 593 YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETK 650
+Y + + + D ++RR +V+ + +R D A+K++ +
Sbjct: 253 GKQSYQGWMFARLLAFSNGDLQALYDRSDGFYRRQLVLTTKEKPVDRADDPDLAEKMKAE 312
Query: 651 YTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD--CCDIGENLW 708
+ W +G++ ++ + + +E ++ + ++D +
Sbjct: 313 -SEGIFLWAFEGLQRLVANNFKFTESDRIRENREAVKRDNNNIFDFMDSEGYIQRKADAS 371
Query: 709 EESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG--FIGGIKREKIEKEWKSKRII 766
S + Y + E+ + R+ + + F +
Sbjct: 372 ISSKDFYEIYRMWCEEN---SLAPLKARSFSDAMIANAGRFNLEHCNNITNSAGRRVWGF 428
Query: 767 KGL 769
G+
Sbjct: 429 MGV 431
>gi|94995306|ref|YP_603404.1| DNA primase [Streptococcus phage 10750.4]
gi|94548814|gb|ABF38860.1| DNA primase [Streptococcus phage 10750.4]
Length = 498
Score = 137 bits (345), Expect = 7e-30, Method: Composition-based stats.
Identities = 47/284 (16%), Positives = 95/284 (33%), Gaps = 20/284 (7%)
Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ------EFLDLVSGYF- 477
R++ +G+ +++T Q + + IT T + +F +S
Sbjct: 138 DYRYIPVANGVYNIQTKQLEPFSPKFIITSKIQTSYTSKARKPILGGWFDFDKWLSSLAV 197
Query: 478 ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
EV++ + + A+ ++ + + G G +GK T L++ G + N +
Sbjct: 198 NDGEVVELLWQVMNEAINPNRTRKKLVIMVGDGNNGKGTFQALLENLIGRANISNLKPDQ 257
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
L L G I + + + + + GD + +TY
Sbjct: 258 F---------GKEFYLSALDGKVCNIGDDISNKYLDEVSDLMSVASGDPVQVNRKGKDTY 308
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKK 657
E+ N RN W+RR +IPF+ K + + +
Sbjct: 309 -EATYRLMCIFSGNDLPKARNKTTGWYRRLCLIPFNADFNGEVERPEIKDQFMKDKQLLE 367
Query: 658 WFLKGVKAYISKGLD-VDIPEVCLKAKEEERQGTDTYQAWIDDC 700
W L K + D P+ + E ++ D + W+ +
Sbjct: 368 WVL--FKILNMEDFDKFIEPKAVREVIESYKKDNDYIRLWVTEY 409
>gi|227544271|ref|ZP_03974320.1| conserved hypothetical protein [Lactobacillus reuteri CF48-3A]
gi|227185749|gb|EEI65820.1| conserved hypothetical protein [Lactobacillus reuteri CF48-3A]
Length = 220
Score = 137 bits (345), Expect = 7e-30, Method: Composition-based stats.
Identities = 35/210 (16%), Positives = 74/210 (35%), Gaps = 10/210 (4%)
Query: 357 NFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFS 416
+++ + ++ + + + Y ++E S +
Sbjct: 17 GVTSALQAMGKTKASRTFNDEQQAAFKNYENAKAYEAFILKERSTRGINGILTNSRPKLV 76
Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTG-TPFVEGEPSQEFLDLV 473
+ D+ L +G +L+ G + + ITKST P +G + + +
Sbjct: 77 KEINDFDADPFLLNTPNGPFNLKKGMHGQQEIQADELITKSTSCVPGNQGA--SLWQEAL 134
Query: 474 SGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532
+ +F + +++Y VG+ +G + I G G +GKST N I G Y +
Sbjct: 135 TTFFCGDQALINYVQEIVGLVAIGQVYLEALIIAYGSGRNGKSTFWNTIANVLGT-YTGH 193
Query: 533 AEASDIMQNRPPEAGKANPSLIRLMGSRIV 562
A + P + + G R++
Sbjct: 194 LSADALTTGVRR---NVKPEMAEVKGKRLI 220
>gi|167771872|ref|ZP_02443925.1| hypothetical protein ANACOL_03245 [Anaerotruncus colihominis DSM
17241]
gi|167665670|gb|EDS09800.1| hypothetical protein ANACOL_03245 [Anaerotruncus colihominis DSM
17241]
Length = 433
Score = 137 bits (344), Expect = 9e-30, Method: Composition-based stats.
Identities = 54/377 (14%), Positives = 122/377 (32%), Gaps = 31/377 (8%)
Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTP 459
+ ++ + I +D + +G ++ + Y
Sbjct: 73 TNLLASIKLQAYSPPLPIETDR-------IHVANGTYFMDDSFTTD---KSYCNNRLTVA 122
Query: 460 FVEGEPSQE-FLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLM 518
+ P+ + +L +S ++E+V +G LL K Q+ + + G GG GKS +
Sbjct: 123 YNSDAPAPKKWLQFLSELLQAEDVPT-LQEFLGYCLLPTTKGQKMLMLIGKGGEGKSRIG 181
Query: 519 NLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKI 578
+++ G+ + + I + S L +++ + + + I
Sbjct: 182 LVMRSLLGD----SMNTTSI-----QKVESNRFSRADLENKLLMVDDDMDMSALPKTNYI 232
Query: 579 KQMTGGD-CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637
K + + M +Y + + D ++RR IV+ A
Sbjct: 233 KSIVTSECKMDMERKGVQSYQSQLYVRFLCFGNGALTALHDKSDGFFRRQIVLTTKDRPA 292
Query: 638 NR--DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQA 695
R D KL + W L+G+ I I + E ++ ++
Sbjct: 293 GRADDPFLVDKLLRE-KEGIFLWCLEGLHRLIRNNYQFSISGKARENMEAVKRSSNNVIE 351
Query: 696 WI--DDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK-GFIGGIK 752
++ + + S ++ ++Y+ + + +K +S V+ L Q
Sbjct: 352 FLQSEGYIRFRADSEASSKAIYEAYTRWCDDN---AQKPMSANRVSSELAQNERLYNVEA 408
Query: 753 REKIEKEWKSKRIIKGL 769
+ K R G+
Sbjct: 409 TNNVRIGGKRVRGFVGI 425
>gi|225860023|ref|YP_002741532.1| DNA primase [Streptococcus pneumoniae Taiwan19F-14]
gi|298229141|ref|ZP_06962822.1| DNA primase [Streptococcus pneumoniae str. Canada MDR_19F]
gi|298255123|ref|ZP_06978709.1| DNA primase [Streptococcus pneumoniae str. Canada MDR_19A]
gi|298501767|ref|YP_003723707.1| DNA primase [Streptococcus pneumoniae TCH8431/19A]
gi|225728196|gb|ACO24047.1| DNA primase [Streptococcus pneumoniae Taiwan19F-14]
gi|298237362|gb|ADI68493.1| DNA primase [Streptococcus pneumoniae TCH8431/19A]
Length = 521
Score = 137 bits (344), Expect = 1e-29, Method: Composition-based stats.
Identities = 47/287 (16%), Positives = 92/287 (32%), Gaps = 25/287 (8%)
Query: 422 LDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ---------EFLDL 472
LD R++ +G+ +++T + + + IT T + +L+
Sbjct: 154 LD-DYRYIPVANGVYNIKTHKLEEFSPNFVITSKIQTEYNPCARKPILDGWFDFDRWLEA 212
Query: 473 VSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532
++ +EV+ + + A+ ++ + + G G +GK T L++ G + N
Sbjct: 213 LA--VNDKEVVALLWQVINEAINPNRTRKKMVLMVGDGNNGKGTFQALLENLIGRSNISN 270
Query: 533 AEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLN 592
+ L L G I + + + + + GD +
Sbjct: 271 LKPDQF---------GKEFYLGALEGKVCNIGDDISNKYLDEVSDLMSVISGDPVQVNKK 321
Query: 593 YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYT 652
E+ N RN W+RR +IPF + K
Sbjct: 322 SLQP-VEARFRLLCIFSGNDLPRARNKTMGWYRRLCIIPFRADFNGQKERHEIKDRFIKN 380
Query: 653 LEAKKWFLKGVKAYISKGLD-VDIPEVCLKAKEEERQGTDTYQAWID 698
E +W L K D PE K + + D + W++
Sbjct: 381 KELLEWVL--FKVLNMPDFDSFIEPEAVQKMLSKYKNDNDYIKVWVE 425
>gi|94988182|ref|YP_596283.1| DNA primase [Streptococcus phage 9429.1]
gi|94990062|ref|YP_598162.1| DNA primase [Streptococcus phage 10270.1]
gi|94993974|ref|YP_602072.1| DNA primase [Streptococcus phage 10750.1]
gi|94541690|gb|ABF31739.1| DNA primase [Streptococcus phage 9429.1]
gi|94543570|gb|ABF33618.1| DNA primase [Streptococcus phage 10270.1]
gi|94547482|gb|ABF37528.1| DNA primase [Streptococcus phage 10750.1]
Length = 491
Score = 137 bits (344), Expect = 1e-29, Method: Composition-based stats.
Identities = 55/334 (16%), Positives = 116/334 (34%), Gaps = 35/334 (10%)
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELY--------ITKSTGTPFVEGEPSQEFLDLVS 474
D L ++GI D + + + + P ++G + +L +
Sbjct: 130 DVRRYVL-VKNGIYDKYKRKLLPFDYRFINFSTIETELIPNAPLPTIDGWDVESWL--LD 186
Query: 475 GYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
++++ + V +L G ++ I G G GK T +I G + V +
Sbjct: 187 LMSGDKDLVKLLWQVVAASLNGNYSYRKSIWFVGNGNDGKGTFQQMISNLVGFKNVAPLK 246
Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAA-KIKQMTGGDCMTARLNY 593
+ + L + G ++I + ++ + + G+ ++
Sbjct: 247 LNQFSE---------RFGLAIIEGKTVIIGDDVQAGIYVDESSNFNSVVTGEPVSIEKKG 297
Query: 594 GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQK---LETK 650
N Y + T N +N + +RR I+IPF K ++++ ++A K + K
Sbjct: 298 ENPY-MAIFKKTVIQSTNGMPSFKNKSNGTYRRIIIIPFKKTFSSKEDNWAIKDDYINRK 356
Query: 651 YTLEAKKWFLKGVKAYISKGLD-VDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWE 709
LE W I+ D P+ + ++ +T A+IDD + +
Sbjct: 357 EVLEYVLW------KAINIDFDRFSEPKATQERMHAFKRDNNTILAFIDDWFERFTSTVL 410
Query: 710 ESHSLAKSYSEYREQELNYDRKRISTRTVTLNLK 743
+ L Y E+ + + + T L
Sbjct: 411 PTRFLWWLYKEWCKDNGH---TPLKQSTFENELS 441
>gi|78212114|ref|YP_380893.1| ATPase-like [Synechococcus sp. CC9605]
gi|78196573|gb|ABB34338.1| ATPase-like [Synechococcus sp. CC9605]
Length = 902
Score = 137 bits (344), Expect = 1e-29, Method: Composition-based stats.
Identities = 107/681 (15%), Positives = 220/681 (32%), Gaps = 61/681 (8%)
Query: 134 YFVAYNIHPKTKKEYTWT-TPPHRFKVED----TPLLSE--EDVEYLFKFFQEITVPLVK 186
+A ++HPKT + PH +++++ P L E +DV F+ P
Sbjct: 207 QRLAGSVHPKTGRRAEIIHLSPHTYELDEVLSFLPELDEPVDDVTDSGGDFRPADGPEPD 266
Query: 187 DKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEW-----IPVVMAVHHETR 241
D + T + Q + L + + W + +H E+
Sbjct: 267 DHEQFPDFSTLPPGHLIQALAPKTLGLLKGLDPDSDDRWRKCWQLSKHLRAGR-LHLESL 325
Query: 242 GSSK------GKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHG 295
G + + + + + + + E G + + H
Sbjct: 326 GCTVVDADSIEMTLMSDFIRASGMKGGDVEAALEEHYRPEPCGTSDYCDTYLKRKLRAHF 385
Query: 296 KLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKK--------DKNNVYIWSLT 347
+ R S ++K + + D W +N + +
Sbjct: 386 EHEGLW----RHSYGWHKRLVPASNPADWTANIDDSFWTVCRIKTCEVVIENAIGLKGDL 441
Query: 348 LDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR-----QNVEENSKA 402
++ A V D D K + Y + S+
Sbjct: 442 TNQPLAHSRGRFVRYNPDQGCWLHVSRDAMKREVADLLLKCFSYNKDEEKVFRFSTASRV 501
Query: 403 KSTAQSLEAGSIFSITSD-LLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFV 461
KS+ + LE +T+D +D + + +G ++ G+ V E +T S F+
Sbjct: 502 KSSIEWLET-----MTADAEMDQTP-AIAFANGTYLIDKGELVPHKPEYRLTYSIQGDFI 555
Query: 462 EG--EPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMN 519
E D + F ++ + + + ++ + + G GSGK L
Sbjct: 556 PDCVECPPHLHDFIVSSFGD-HYVEPVQQLLRYMVDPTLPNRKIVMVIGPSGSGKGVLER 614
Query: 520 LIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIK 579
LI+ F V + +S E + G ++V + + I
Sbjct: 615 LIEKLFPPSCVSSITSSI------KEINSPEKIRQYVSGKQLVAFPDVQ-GLQTGVTTIY 667
Query: 580 QMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR 639
M G M R + + + I ++ N RR +++ +P
Sbjct: 668 SMVDGGLMAQRNLFTDDTEGVVFTGRVVICSSQAPQFENAGSGMARRALILETQRPAEKP 727
Query: 640 DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD 699
DA QKL + W L+ K K + V + + A+ D + ++D+
Sbjct: 728 DADLDQKLAGELG-SIVSWALQ-AKHADVKRVLVSGNQTFIDAQHNVEADMDVVRQFLDN 785
Query: 700 CCDI-GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEK 758
CC+ G + + L +++ ++ E Y K ++ RT+ +KQ +R +
Sbjct: 786 CCEPCGGDYMPKLGVLYETFKQFCED-FGYT-KVLNRRTLLTRIKQALPNLHTQRRSVPG 843
Query: 759 EWKSKRI---IKGLKLKPAFE 776
+K++ + G +++P +
Sbjct: 844 TNSTKKVNPQLFGFRIRPEVD 864
>gi|168187843|ref|ZP_02622478.1| CHC2 zinc finger domain protein [Clostridium botulinum C str.
Eklund]
gi|169294309|gb|EDS76442.1| CHC2 zinc finger domain protein [Clostridium botulinum C str.
Eklund]
Length = 731
Score = 136 bits (342), Expect = 2e-29, Method: Composition-based stats.
Identities = 83/531 (15%), Positives = 196/531 (36%), Gaps = 50/531 (9%)
Query: 261 DEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYK 320
D + + + + K F + Y + +D +N +
Sbjct: 219 DNDRPGESYKNDVIKGLKPYIKSYKVFPTKDYAKE-------IGQDITDLFNLKYLDKEQ 271
Query: 321 KGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSE---EPEDNN 377
+ L + K Y + I S+ L K+ + + + + KE F + + +D++
Sbjct: 272 FNNIL--DEIKPTYTYLTDKGKINSIKLAKLILNCEDIIYTNKEGFFHYEDGYYKLKDDD 329
Query: 378 KNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILD 437
KN+ + N +K + +Q +E I + ++ ++++L ++ +L
Sbjct: 330 KNTLMKQVISNYLGDSILNNNRTKNEVLSQLMELTVI-----EEIEPNNQYLNFKNCLLK 384
Query: 438 -LETG-QKVKPTKELYITKSTGTPFV----EGEPSQEFLDLVSGYFESEEVMDYFTRCVG 491
+ G + + T + I + + + S + L +++ +++++ + G
Sbjct: 385 VTKEGIEVMDHTPD--IITIHRFDYDFKRADYKNSNYYKGLKYALYDNTDIVEFLQQFAG 442
Query: 492 MALLGGNKA-QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKAN 550
L+ + + + I G G+GKST + ++ + + +++
Sbjct: 443 ACLMPNARLMKAALIISGTKGTGKSTFIEPLQEMM-KGLFETYDLKTLEEDKYI------ 495
Query: 551 PSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVP 610
+ L+ + ++ ++ ++K++ G+ + + + S + + I
Sbjct: 496 --ISYLINKKCILSTDDGGKPLETCHRLKKLIYGENVPTDRKFKSNVSLN-LNLAIVIGL 552
Query: 611 NKHLFVRNPDDAWWRRYIVIPFDKPI---ANRDASFAQKLETKYTLEAKKWFLKGVKAYI 667
N +P +A + R + F + I D F +K++ LE + L G+ +
Sbjct: 553 NDIPKFNDPSNAIFDRLQFVEFKRKIRGTEKEDPHFIEKIKKYEMLEVINFSLDGLAKLL 612
Query: 668 SKGLDVDIPEVCLKAKEEERQGTDTYQAWI---DDCCDIGENLWEESHSLAKSYSEYREQ 724
+++P+ KE G ++W+ + C + + L SY Y
Sbjct: 613 RNDYKLNVPKEVQAFKENIIIGNSPLESWLYSCTEVCSNDD--FTTLKDLYNSYLGYCLN 670
Query: 725 ELNYDRKRIST----RTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771
EL+ D K + L+ KGF K+E K K + G+KL
Sbjct: 671 ELSLDYKEAKNECGKQEFNKILQGKGFE--FKKEIRRAGIKYKSVFFGIKL 719
>gi|331700427|ref|YP_004397386.1| phage/plasmid primase, P4 family [Lactobacillus buchneri NRRL
B-30929]
gi|329127770|gb|AEB72323.1| phage/plasmid primase, P4 family [Lactobacillus buchneri NRRL
B-30929]
Length = 484
Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats.
Identities = 49/328 (14%), Positives = 112/328 (34%), Gaps = 29/328 (8%)
Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE--------FLDLVSGY 476
+ +GI +L + + + + T T +V +L+ ++ +
Sbjct: 123 DRYLIPVANGIWNLHRHELIPFSPDYVFTTKIATKYVNNPVPPNINGWTVDGWLNEIANH 182
Query: 477 FESEEVMDYFTRCVGMALLGGNKAQRFIHIRG-VGGSGKSTLMNLIKYAFGNQYVINAEA 535
E++ + +L G ++ I + G +GK T LI+ G V + +
Sbjct: 183 --DPEIVKLLWEIINDSLNGNFTRKKAIFLYSEKGNTGKGTFQQLIQNLVGKSNVGSLKV 240
Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI-NAAKIKQMTGGDCMTARLNYG 594
+ + L L+G + I +T + I +++ + GD +T
Sbjct: 241 NQFDE---------RFKLALLVGKTVCIGDDTPPDIYIKDSSSFNSVVTGDLVTIEYKGQ 291
Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLE 654
+ ++ + T N N RR I++PF+ + ++ + + +
Sbjct: 292 DGFT-TTLRCTVIQSCNGLPNFHNKG-GTMRRMIIVPFNNHFEGSNDNWDIRDDYMSRQD 349
Query: 655 AKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
++ L +A D+P V +A E + D + + E ++ +
Sbjct: 350 VLQYVL--YRALQLDFKKFDVPTVSKQALSEFEKDNDPLIGF-REFFLSLEVDKIPTYYV 406
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNL 742
+ Y +Y + K + L
Sbjct: 407 YEYYKKYCQING---LKALGQNKFIRRL 431
>gi|227523364|ref|ZP_03953413.1| prophage Lp4 protein 8, DNA primase/helicase [Lactobacillus
hilgardii ATCC 8290]
gi|227089470|gb|EEI24782.1| prophage Lp4 protein 8, DNA primase/helicase [Lactobacillus
hilgardii ATCC 8290]
Length = 484
Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats.
Identities = 49/328 (14%), Positives = 112/328 (34%), Gaps = 29/328 (8%)
Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE--------FLDLVSGY 476
+ +GI +L + + + + T T +V +L+ ++ +
Sbjct: 123 DRYLIPVANGIWNLHRHELIPFSPDYVFTTKIATKYVNNPVPPNINGWTVDGWLNEIANH 182
Query: 477 FESEEVMDYFTRCVGMALLGGNKAQRFIHIRG-VGGSGKSTLMNLIKYAFGNQYVINAEA 535
E++ + +L G ++ I + G +GK T LI+ G V + +
Sbjct: 183 --DPEIVKLLWEIINDSLNGNFTRKKAIFLYSEKGNTGKGTFQQLIQNLVGKSNVGSLKV 240
Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI-NAAKIKQMTGGDCMTARLNYG 594
+ + L L+G + I +T + I +++ + GD +T
Sbjct: 241 NQFDE---------RFKLALLVGKTVCIGDDTPPDIYIKDSSSFNSVVTGDLVTIEYKGQ 291
Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLE 654
+ ++ + T N N RR I++PF+ + ++ + + +
Sbjct: 292 DGFT-TTLRCTVIQSCNGLPNFHNKG-GTMRRMIIVPFNNHFEGSNDNWDIRDDYMSRQD 349
Query: 655 AKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
++ L +A D+P V +A E + D + + E ++ +
Sbjct: 350 VLQYVL--YRALQLDFKKFDVPTVSKQALSEFEKDNDPLIGF-REFFLSLEVDKIPTYYV 406
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNL 742
+ Y +Y + K + L
Sbjct: 407 YEYYKKYCQING---LKALGQNKFIRRL 431
>gi|295101705|emb|CBK99250.1| phage/plasmid primase, P4 family, C-terminal domain
[Faecalibacterium prausnitzii L2-6]
Length = 457
Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats.
Identities = 48/326 (14%), Positives = 108/326 (33%), Gaps = 19/326 (5%)
Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ-EFLDLV 473
+ + + + +G L L G + + + P+ +L +
Sbjct: 86 LAAHVEDFAPEADRVHLANGTLKL-DGSFTEGRP-TIVRSRLPVAYRPDAPAPVRWLSFL 143
Query: 474 SGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
G +E+ + +G +L+ NK QR + I+G GG GKS I G + N
Sbjct: 144 DGLLYTED-IPTLQEFIGYSLIPSNKGQRMMVIKGNGGEGKSQ----IGAVLGALFGSNM 198
Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM-TGGDCMTARLN 592
+ I + + + L + + + +K + T +
Sbjct: 199 KDGSI-----GKISENRFARADLEHILLCVDDDMRMEALRQTNYVKSIVTAQGKIDLERK 253
Query: 593 YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETK 650
+Y + + + D ++RR +V+ + A R D A+K++ +
Sbjct: 254 GKQSYQGWMFARLLAFSNGDLQALYDRSDGFYRRQLVLTTKEKPAGRVDDPDLAEKMKAE 313
Query: 651 YTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD--CCDIGENLW 708
W +G++ + + +E ++ + +++ + +
Sbjct: 314 -VEGIFLWAFEGLQRLAANNFKFTESQRTRDNREAVKRDNNNVFDFLESEGYIRLKADCT 372
Query: 709 EESHSLAKSYSEYREQELNYDRKRIS 734
S L + Y + E+ KR S
Sbjct: 373 ISSKDLYEIYRMWCEENNLTPLKRRS 398
>gi|326381741|ref|ZP_08203435.1| P4 family phage/plasmid primase [Gordonia neofelifaecis NRRL
B-59395]
gi|326199988|gb|EGD57168.1| P4 family phage/plasmid primase [Gordonia neofelifaecis NRRL
B-59395]
Length = 706
Score = 135 bits (340), Expect = 3e-29, Method: Composition-based stats.
Identities = 50/373 (13%), Positives = 106/373 (28%), Gaps = 59/373 (15%)
Query: 412 GSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ---- 467
S+ + + + ++GI+D T V + E G + S
Sbjct: 216 RSMVPVRERG--TDPDLIATRNGIVDFRTKTSVPFSPEYVFLAKLGVDWNPDAVSPVIPN 273
Query: 468 -----------------------------------EFLDLVSGYFESEEVMDYFTRCVGM 492
+ ++ + EV V
Sbjct: 274 PKHCLHDDRISCTSLCTCSGDHDDPADCTSSCQTWDVESWMADLIDDPEVTTLLWEIVSA 333
Query: 493 ALLGGNKAQRFIHIRGV-GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANP 551
+ + + G +GK TL+ +I+ G + +D
Sbjct: 334 VIRPYISWNKAVFFYSQQGNNGKGTLLAMIRNLLGRGNYASLPLADF---------GHEF 384
Query: 552 SLIRLMGSRIVIISETNENDEIN-AAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVP 610
L L+G+ ++ E + I+ AA K + D + + I
Sbjct: 385 KLEDLVGTSAILTDENDVGTYIDKAANFKAIVTNDVIMINRKNRRAI--KHQHYGLMIQC 442
Query: 611 -NKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISK 669
N V++ ++ RR + I FDK R+ + + + ++ L ++A
Sbjct: 443 FNDKPTVKDKSESLLRRLMFIHFDKSFTGRERKYIKDDYLHR-RDVLEYVL--LRALSMG 499
Query: 670 GLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYD 729
++ P A +E ++ D A+ + + L Y + + +
Sbjct: 500 HYELSEPAAVKAALDEFKEYNDPVLAFWREIRTQITWRLAPAQFLFDMYKSWMVRNMPNS 559
Query: 730 RKRISTRTVTLNL 742
K + L
Sbjct: 560 -KALGRYKFYDQL 571
>gi|7288084|emb|CAB81819.1| hypothetical protein [Sulfolobus islandicus]
Length = 699
Score = 135 bits (340), Expect = 3e-29, Method: Composition-based stats.
Identities = 102/728 (14%), Positives = 227/728 (31%), Gaps = 120/728 (16%)
Query: 8 EQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLS-------SEKIDKLPACGFGFVCGV 60
+ A+ ++NGF + P+ K+P + +W++ +E + + + +
Sbjct: 6 QYAQWFVNNGFAIFPIDKETKKPV-ISEWQKYSREKLTEEEKAEFLKMIGEQNYNYAIPG 64
Query: 61 GEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIP-----FRMNKEGIKK 115
G++ L D + + + L + Q P + + + +
Sbjct: 65 GQKGLVVLDFEDLQLLKQWISEPALDDLCKQTLCV--QTPHGGLHIFVISYEIPEHKFNP 122
Query: 116 KKTTESTQGHLDILGCGQYFVAYNI---H--------PKTKKEYTWTTPPHRFKVEDTPL 164
T + +G +D+ Y + H P+ +++T + ++ P+
Sbjct: 123 AFTL-NGKGIVDLQSYNSYVLGVGSCINHKYCESPKCPRRGQDHTTCYTLYNNEL--VPI 179
Query: 165 L-SEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYN 223
+ + ++ K+ EI + +K W E
Sbjct: 180 VETVRGLKEFLKWLDEIAKQKKLGIELSPSAKEWVYGKTEAVEEEEFKKLKED------- 232
Query: 224 GSHDEWIPVVMAVHHETRG---SSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDT 280
MA +++ +G + +E+ + K E+ + KW I
Sbjct: 233 ----------MAKYNKFKGKTVEAVREEVCKEMKKSNEELKEK--SQKWKAIYNTAIPVI 280
Query: 281 AKKRSTFTSLFYHH--------GKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADT-- 330
+S +T L L G+ D A +Y Y T
Sbjct: 281 CDSKS-YTQLGIDRSRGDWRVFRALFTHGVADLDVVDKLLPADSKVYSPKWNRYMIHTIA 339
Query: 331 KAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPE---------------- 374
KAW K K + K + + + +
Sbjct: 340 KAW-KYSKPALKFQKEAQGKNEKEAKKIARKIITEAVLERYKIKAFYQVTGHNQAIVGTF 398
Query: 375 --DNNKN-----SKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDL----LD 423
D K K R ++ K + + I DL +
Sbjct: 399 VWDKKKGIYVPFDKGLRKVIRKLAESLQIKSRDKTLARLSKRDVDDIVDEIKDLKLTPIP 458
Query: 424 SSSRFLGEQDGILD--LETGQKVKPTKELYITKSTG--TPFVEGEP-----SQEFLDLVS 474
+ + ++ ++ ++ + T + Y + E QE +L
Sbjct: 459 AEPLRVAFKNVTIEWAIKANILHRKTPKQYSFYYLPWTVNYEEFNKMKSLSIQEIEELAK 518
Query: 475 GYFESEEVMDY----------FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524
+ + + + +G L G K ++ + G G +GKS+ +NL+K
Sbjct: 519 RLCP-KSLETFKSWVGVKWILLFQIIGYTLYPGIKFRKAFMLVGEGKNGKSSFINLVKKV 577
Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGG 584
G+ Y ++ ++ R + L ++E+ + + ++K++TG
Sbjct: 578 LGD-YAVSISPRELFDPRN------RFIVGNLYHKLANAVAESKDYSIDDMDRVKRLTGD 630
Query: 585 DCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNP-DDAWWRRYIVIPFDKPIANRDASF 643
D +TA + + + + + I N VR+ D A+W R++++ F + D+ F
Sbjct: 631 DWITADVKFKDPITFK-SVAKLIIASNNMPHVRDTNDRAFWHRWVIVEFPHQFKDNDSWF 689
Query: 644 AQKLETKY 651
+ +
Sbjct: 690 DKTFTEEE 697
>gi|260889939|ref|ZP_05901202.1| putative phage DNA primase [Leptotrichia hofstadii F0254]
gi|260860545|gb|EEX75045.1| putative phage DNA primase [Leptotrichia hofstadii F0254]
Length = 683
Score = 135 bits (340), Expect = 3e-29, Method: Composition-based stats.
Identities = 59/346 (17%), Positives = 119/346 (34%), Gaps = 29/346 (8%)
Query: 431 EQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEE-VMDYFTRC 489
+GILD + + + T ++ T T + G +++ ++ + + +
Sbjct: 354 VANGILDTKEFKLLDFTPDIVCTSKIPTNYNPGASTEKADKIIGSFVRDDPFKKNLICEM 413
Query: 490 VGMALLGG-NKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGK 548
+G L N +F I G +GKS + FG+ +++ + D+
Sbjct: 414 LGYGLYEDKNLIGKFFIIVGDKENGKSVFLRYTANTFGDFNIMSLDLKDLGSRFATTL-- 471
Query: 549 ANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFI 608
L + + + N +K++ G+ M SES +
Sbjct: 472 -------LRDKIFNLGDDISGNYIDETDVLKKVVTGEKMVVEEKGKQGRSES-YNIALIF 523
Query: 609 VPNKHLFVRNPDDAWWRRYIVIPFDKPI----ANRDASFAQKLE-TKYTLEAKKWFLKGV 663
NK V++P A RR +++ FD RD QK++ + K ++G+
Sbjct: 524 TANKTPRVKDPTGAVLRRAMLVIFDNDFSVGSPARDNKILQKIKNEEEREGLLKLAVEGL 583
Query: 664 KAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLW---EESHSLAKSYSE 720
K +G + E + + + + + + + W + + + SY
Sbjct: 584 KRLSERGYFEENEETIKNLI-DFDFDNNPIKEFDYEMRTLKTDGWYIGKTADEVHSSYIF 642
Query: 721 YREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRII 766
+ Q D + + R T F K E K +RI
Sbjct: 643 WCSQN---DIRPLRKRNFTKE-----FKALHKTELKRKRIDGERIF 680
>gi|262200579|ref|YP_003271787.1| P4 family phage/plasmid primase [Gordonia bronchialis DSM 43247]
gi|262083926|gb|ACY19894.1| phage/plasmid primase, P4 family [Gordonia bronchialis DSM 43247]
Length = 739
Score = 135 bits (339), Expect = 3e-29, Method: Composition-based stats.
Identities = 48/337 (14%), Positives = 109/337 (32%), Gaps = 34/337 (10%)
Query: 425 SSRFLGEQDGILDLETGQ--KVKPTKELYITKSTGTPFVEGEPSQEF----------LDL 472
+ ++G++D G + + + + F
Sbjct: 250 DRDLIACRNGVVDYNGGSPVFHEFDPKYVFLAKLDVDWNPDAQNPVFDTPDGDQWDVESW 309
Query: 473 VSGYFESEEVMDYFTRCVGMALLGGNKA-QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVI 531
++ + EV+D + +G N + G +GK TL++L++ G
Sbjct: 310 MASLSDDPEVVDLLWKGIGAIARPYNSWNKAMFFYSRKGNNGKGTLLSLMRNMLGVGNYA 369
Query: 532 NAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEIN-AAKIKQMTGGDCMTAR 590
+ +D + L L + +++ E + + AA K + D +T
Sbjct: 370 SIPLADF---------GKDFLLEPLTRANAILVDENDVGTFVEKAANFKAVITNDVITIN 420
Query: 591 LNYGNTYSESPASFTPFIVP-NKHLFVRNPDDAWWRRYIVIPFDKPIANRDASF--AQKL 647
Y + F + N ++ ++ +RR I +PF+K + + L
Sbjct: 421 RKYKAPI--AHQHFGFMVQCLNDEPVFKDKSESIYRRQIFVPFEKCFTGAERKYIKDDYL 478
Query: 648 ETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENL 707
E ++ L+ + ++ P A + R+ D +A+ ++ + +
Sbjct: 479 RR---PEVLEYVLR--RVLTMDYYELPEPAAVQAALNQFRESNDPVRAFWNENQMLFQWD 533
Query: 708 WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQ 744
L + Y + + + K I L Q
Sbjct: 534 LLPFPFLHEFYVAWMGRYMPNS-KPIGKNKFISELVQ 569
>gi|255323694|ref|ZP_05364822.1| putative prophage DNA primase [Corynebacterium tuberculostearicum
SK141]
gi|255299184|gb|EET78473.1| putative prophage DNA primase [Corynebacterium tuberculostearicum
SK141]
Length = 636
Score = 135 bits (339), Expect = 4e-29, Method: Composition-based stats.
Identities = 61/338 (18%), Positives = 118/338 (34%), Gaps = 29/338 (8%)
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ-------------EF 469
D++ +G+ + +TG+ + + T + E+
Sbjct: 190 DTTQDIAPFANGVYNYDTGEFKPYSPDQTHLFKFATKWNPDAEMPVIEQEDGTVWRPDEW 249
Query: 470 LDLVSGYFESEEVMDYFTRCVGMALLGGNK-AQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528
L+ + + EE+ + +G L N Q I + G +GK TL+ LI+ G+
Sbjct: 250 LESL--FGGDEELALSMWQVIGAHLRPYNSFDQAAILMSPKGSNGKGTLLQLIESLVGSH 307
Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN-DEINAAKIKQMTGGDCM 587
+ + Q + R++G VI E N +A K + D +
Sbjct: 308 NTAHIPLDAMEQ---------RFGMHRVIGKCAVIADENNVGAYHTSARNFKALVTADTL 358
Query: 588 TARLNYGNTYSESPASFTPFIVP-NKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQK 646
T + P F N +L V + D+ +RR + IPF + + + A +
Sbjct: 359 TIDRKNRSVVDYRP--FVQVTQCFNDNLRVADDSDSLFRRQLFIPFPQTFLDSKRNPAIR 416
Query: 647 LETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGEN 706
+ E +W K V I + K E++ + +ID+ D +
Sbjct: 417 EDYVKRPEVLEWVAKHVLLEIPSYKRFTESTASKELKIEQKLVNSPIREFIDENYDSFVH 476
Query: 707 LWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQ 744
+ L + Y + ++ K S + T L++
Sbjct: 477 DFIPLKCLYQIYKAWYADTVSDRGKAASKKAFTNELRR 514
>gi|313884355|ref|ZP_07818117.1| nucleoside triphosphatase, D5 family [Eremococcus coleocola
ACS-139-V-Col8]
gi|312620433|gb|EFR31860.1| nucleoside triphosphatase, D5 family [Eremococcus coleocola
ACS-139-V-Col8]
Length = 619
Score = 134 bits (338), Expect = 4e-29, Method: Composition-based stats.
Identities = 55/333 (16%), Positives = 115/333 (34%), Gaps = 24/333 (7%)
Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF-----------LDLV 473
+ + + + ET Q++ + + T E PS + LD +
Sbjct: 204 DPNIIALNNTLFNYETKQRIPFSPDYVFLSKLSTNLAESPPSIPYHIKPDGTRINPLDWI 263
Query: 474 SGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532
+ +++++ + ++ + G +GKST + +I G V+
Sbjct: 264 NELAADNQKLSQALLVIACACVRPKWIWRQMALLYNSGKNGKSTFLEMINALVGEGNVMP 323
Query: 533 AEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI-NAAKIKQMTGGDCMTARL 591
+ D+ G +L ++G +V+ +++ N I N K+K + +
Sbjct: 324 SSLEDL----SNTDGAGRFALAGIVGKSLVLCDDSDTNTYIRNTRKLKTLIAHGTIAVER 379
Query: 592 NYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKY 651
N +S P F N R+ AW R +++PF D KL +
Sbjct: 380 KGENMFSYRPLIF-LLAAANDLPKSRDKSQAWLDRLVLVPFPARF---DGEEDDKLIQPW 435
Query: 652 --TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWE 709
+ E ++ L + + K ++ P KEE D + + +
Sbjct: 436 VKSREFSEYMLYHLLVEMDKVYELLEPSDSKALKEEYVMENDPVVEFYHEYIANSHEDFL 495
Query: 710 ESHSLAKSYSEYREQELNYDRKRISTRTVTLNL 742
+ L + ++ + +Q +S RT L
Sbjct: 496 ANCYLWELFNWWLKQNRPNT-SVMSNRTFIKRL 527
>gi|295105016|emb|CBL02560.1| phage/plasmid primase, P4 family, C-terminal domain
[Faecalibacterium prausnitzii SL3/3]
Length = 457
Score = 134 bits (338), Expect = 5e-29, Method: Composition-based stats.
Identities = 49/363 (13%), Positives = 113/363 (31%), Gaps = 24/363 (6%)
Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ-EFLDLV 473
+ + + +G L L G + + + P +L +
Sbjct: 85 LAAHVEDFPPEQDRIHLANGTLML-DGTFTEGKP-DIVRNRLPVFYRPDTPKPVLWLSFL 142
Query: 474 SGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
+G E + +G L+ NK QR + I+G GG GKS I G +
Sbjct: 143 NGLLY-PEDIPTLQEFIGYCLIPSNKGQRMMVIKGNGGEGKSQ----IGAVLGQMLGSSM 197
Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM-TGGDCMTARLN 592
+ I + + + L + + + +K + T M
Sbjct: 198 KDGSI-----GKISENRFARADLEHILLCVDDDMRMEALRQTNYVKSIVTAQGKMDLERK 252
Query: 593 YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETK 650
+Y + + + D ++RR +V+ + A R D AQK++ +
Sbjct: 253 GKQSYQGWMFARLLAFSNGDLQALYDRSDGFYRRQLVLTTKEKPAGRMDDPDLAQKMKAE 312
Query: 651 YTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD--CCDIGENLW 708
W +G++ ++ E +E ++ + +++ + +
Sbjct: 313 -VEGIFLWAFEGLQRLVANNFKFTESERTKTNRESVKRDNNNIFDFMESEGYIRLKADAS 371
Query: 709 EESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK--GFIGGIKREKIEKEWKSKRII 766
S L + Y + E+ + +R+ + ++ + + +
Sbjct: 372 ISSKELYEIYRMWCEEN---SLPPLKSRSFSDSVVANLSRYNLEHTNKITNSAGRRVWGF 428
Query: 767 KGL 769
G+
Sbjct: 429 MGI 431
>gi|301321603|gb|ADK68993.1| Predicted ATPase [Gordonia sp. KTR9]
Length = 740
Score = 134 bits (337), Expect = 5e-29, Method: Composition-based stats.
Identities = 50/338 (14%), Positives = 111/338 (32%), Gaps = 39/338 (11%)
Query: 425 SSRFLGEQDGILDLETG--QKVKPTKELYITKSTGTPFVEGE-----------PSQEFLD 471
+ + +GI+D G Q + + E + +
Sbjct: 263 NRDLIAVNNGIIDYNDGDPQFIDFSPEFIFLAKLDVAWNPDARNVVIHNDTDGTDWDVES 322
Query: 472 LVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGV-GGSGKSTLMNLIKYAFGNQYV 530
+ + EV++ +G + R G +GK TL++L++ G Q
Sbjct: 323 WMESLSDDPEVVELLWEIIGATVRPYVSWNRCAFFYSEQGNNGKGTLLSLMRNLIGVQSY 382
Query: 531 INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEIN-AAKIKQMTGGDCMTA 589
+ +D + L L + +++ E + I AA K + D +T
Sbjct: 383 ASVPLADF---------GKDFLLEPLTRASAILVDENDVGTFIEKAANFKAIVTNDVITI 433
Query: 590 RLNYGNTYSESPASFTPFIVP-NKHLFVRNPDDAWWRRYIVIPFDKPIANRDASF--AQK 646
Y + + F + N +++ ++++RR + +PF K + +
Sbjct: 434 NRKYKSPI--AHQHFGFMVQCLNDKPTIKDKSESFYRRQLFVPFTKCFTGAERRYIKDDY 491
Query: 647 LETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGEN 706
L + ++ LK + + P+ A E+ ++ D +A+ ++ GE
Sbjct: 492 LTR---ADVLEYVLK--RVLTMSYYSLSEPQAVKDALEDFKESNDPIRAFWNE--VKGEF 544
Query: 707 LW--EESHSLAKSYSEYREQELNYDRKRISTRTVTLNL 742
W Y + + + K + +L
Sbjct: 545 RWDLVPFPFAYDLYKAWMARNMPNS-KPLGRNKFIDSL 581
>gi|16905404|gb|AAL31318.1|L00966_1 ATP/GTP binding site motif A [African swine fever virus]
Length = 348
Score = 134 bits (336), Expect = 8e-29, Method: Composition-based stats.
Identities = 58/315 (18%), Positives = 109/315 (34%), Gaps = 27/315 (8%)
Query: 489 CVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGK 548
+ A+ G K + G G +GK+ LM L+ G+ Y S + R A K
Sbjct: 3 YLSTAIFRGLKEALMLLWLGGGCNGKTFLMRLVAMVLGDHYASKLNISLLTSCRE-TAEK 61
Query: 549 ANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFI 608
N + +RL G ETN+++ +N +++K+M +TAR S + T
Sbjct: 62 PNSAFMRLKGRGYGYFEETNKSEVLNTSRLKEMVNPGDVTARELNQKQESFQ-MTATMVA 120
Query: 609 VPNKHLFVRNPDDAWWRRYI----VIPF-------DKPIANRDASFAQKLE-----TKYT 652
N + + D WRR + F + D F +
Sbjct: 121 ASNYNFIIDTTDHGTWRRLRHYRSKVKFCHNPDPNNSYEKKEDPRFIHEYIMDPNCQNAF 180
Query: 653 LEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEES- 711
+F + ++ + + E R+ DT +I + +
Sbjct: 181 FSILVYFWEKLQKEYNGQIKKVFCPTIESETEAYRKSQDTLHRFITERVVESPSAETVYN 240
Query: 712 -HSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLK 770
+ +Y+E+ N + KR ++ L+ ++ RI+KG +
Sbjct: 241 LSEVVTAYAEW--YNTNINVKRHIALELSQELENSVLEKYLQWS-----PNKTRILKGCR 293
Query: 771 LKPAFESVDDNSNII 785
+ FE++ + I
Sbjct: 294 ILHKFETLQPGESYI 308
>gi|312113986|ref|YP_004011582.1| Primase 2 [Rhodomicrobium vannielii ATCC 17100]
gi|311219115|gb|ADP70483.1| Primase 2 [Rhodomicrobium vannielii ATCC 17100]
Length = 782
Score = 133 bits (335), Expect = 1e-28, Method: Composition-based stats.
Identities = 60/298 (20%), Positives = 106/298 (35%), Gaps = 47/298 (15%)
Query: 8 EQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACG------FGFVCGVG 61
E+ K + GF + LR K P G E + + +++ KL G G V
Sbjct: 3 EEVKPLVEAGFSVHLLRPKSKIPANDGWSEAPVYTFDQLRKLYRDGQNVGIRLGKPSKVE 62
Query: 62 EQPLYAFDIDSKDEKTANTFKDTFEILHGT------PIVRIGQKPKILIPFRMNKEGIKK 115
L+A D+D + + + D + L P V+ G + + ++ +
Sbjct: 63 GLYLHAIDLDIRVPEAKSEALDRLDELISDGDLKELPCVQSGSGGASRHFYFLTEDAFRS 122
Query: 116 KK------------TTESTQGHLDILGCGQYFV-AYNIHPKTKKEYTWTTPPHRFKVEDT 162
KK E + +++ G G+ V +IHP T K Y W P +
Sbjct: 123 KKLAHSKHKFTGDDGKEHWEWEIELFGTGKQVVLPPSIHPDTGKAYRWVLQPDLKR--GI 180
Query: 163 PLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFY 222
P +S + ++ L + + N+ T E +L + +
Sbjct: 181 PRISADLIDELVGGDESTGF--------------YENSEPLNLTINEARDYLDAIPD--W 224
Query: 223 NGSHDEWIPVVMAVHHETRGS----SKGKEIARRWSKQGSTYDEENFNYKWDTFDFEE 276
D W+ V MA+ HE + E+ WS++G Y+ +W F F+
Sbjct: 225 ADDRDSWVRVGMALKHEFADDKALIKEAWELFDEWSRRGYGYNRAKNLAQWRGFTFDR 282
>gi|223933202|ref|ZP_03625193.1| phage/plasmid primase, P4 family [Streptococcus suis 89/1591]
gi|223898132|gb|EEF64502.1| phage/plasmid primase, P4 family [Streptococcus suis 89/1591]
Length = 517
Score = 133 bits (334), Expect = 1e-28, Method: Composition-based stats.
Identities = 70/480 (14%), Positives = 158/480 (32%), Gaps = 42/480 (8%)
Query: 287 FTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSL 346
+ + ++P + + +D + + +L + W + + +
Sbjct: 5 IAKIKAEYENVVPHPAVYEKPTDWREIRLACRDYRNDWL---EKAKWKETQYGTLEQIND 61
Query: 347 TLDKITASIMN-------FLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEEN 399
++T + +++++ D + + S + E
Sbjct: 62 APKRLTELAVAEGLEQILYVINLPNDRVAVYDPDAGYYHKDPSFAYKVIRLLEPTFTETR 121
Query: 400 SK----AKSTAQSLEAGSIFSITSDLLD-SSS-RFLGEQDGILD--LETGQKVKPTKELY 451
SK + + FS + D RF+ ++GI D L+ +
Sbjct: 122 SKNVLFMLAATKRKYLYDGFSCDFSIGDYQDPKRFILVKNGIFDKQLKKMSGFTHRFVAF 181
Query: 452 ITKSTGTPFVEGEPSQE-----FLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIH 505
T T + S D + ++++ + + +L G ++ I
Sbjct: 182 STIET--EYDPFAESPNIDGWDVDDWLLDLMSGDKDLVHLLWQVISASLNGNYSYRKSIW 239
Query: 506 IRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIIS 565
G G GK T+ LI G + V + + + +L + G ++I
Sbjct: 240 FVGEGNDGKGTVQQLITNIVGIRNVATLKLNQFSE---------RFALSMIEGKTVIIGD 290
Query: 566 ETNENDEINAA-KIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWW 624
+ I+ + + G+ + YS T N+ +N + +
Sbjct: 291 DVQAGVYIDESSNFNSVVTGEPVLVEEKNKQPYSTV-FKKTVIQSTNELPRFKNKTNGTY 349
Query: 625 RRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKE 684
RR+++IPF K + ++ ++ K E + K++ LK P+ L E
Sbjct: 350 RRFLIIPFRKTFSAKEDNWQIKDEYINRDDVKQYVLKKALEL--NFTRFSEPQATLDVLE 407
Query: 685 EERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQ 744
E + DT +A+ID+ ++ L Y E+ ++E +++ L +
Sbjct: 408 EFKSSNDTVKAFIDEWFGTFQSERLPVRFLWWLYQEWCKEEG---ITKVAKGKFERQLIK 464
>gi|300172883|ref|YP_003772048.1| poxvirus D5 protein [Leuconostoc gasicomitatum LMG 18811]
gi|299887261|emb|CBL91229.1| poxvirus D5 protein, putative [Leuconostoc gasicomitatum LMG 18811]
Length = 467
Score = 131 bits (330), Expect = 4e-28, Method: Composition-based stats.
Identities = 65/388 (16%), Positives = 133/388 (34%), Gaps = 37/388 (9%)
Query: 378 KNSKSPRFWFNTDYRRQN--VEENSKAKSTAQSLEAGSIFSI-----TSDLLD--SSSRF 428
K K+ + N R +++N K S Q + + +D +D
Sbjct: 68 KRYKNVKQADNALSSRVATLLKQNKKLTSAKQVKNIVDLIRVITVKDVADYIDFTDKPYM 127
Query: 429 LGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGE-PSQEFLDLVSGYFESEEVMDYFT 487
+ +G LD+ T + + + P + + P+ + + + E +
Sbjct: 128 VSFTNGTLDMRTLEIKPNAPQYHALGGLDYPVSDKDLPTPKTDEFFTRLLGD-ENAELLY 186
Query: 488 RCVGMALLGGN-KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEA 546
+ +G Q F+ + G GG+GK T + I + V
Sbjct: 187 KFIGYGFKRNYLPFQNFVILYGKGGNGKGTALTYIGQKLYSGNVSELSLQAFGDKFKTVG 246
Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQ-MTGGDCMTARLNYGNTYSESPASFT 605
L+G I S+ N N +K ++G + +S + T
Sbjct: 247 ---------LVGKYANIGSDIPANYMPNTENLKLAVSGKEKFEVESKGVQAFSIVNYA-T 296
Query: 606 PFIVPNKHLFVRNPDDAWWRRYIVIP-----FDKPIANRDASFAQKLETKYTLEAKKWFL 660
F N +R D RR +V+ F A+ + E++ E +
Sbjct: 297 LFFSANDLPNIR-RDSGLDRRPLVLTTQGKGFTN--ADGKSDLFD--ESELLDERPAFTR 351
Query: 661 KGVKAYI--SKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSY 718
K +K ++ + ++IPE KA + + D W+D+ + ++ + + + +
Sbjct: 352 KVIKMFMDAERARTLNIPENVQKATADWLKSADIVSQWLDEHTEEEKDRRPTAKYMYQQF 411
Query: 719 SEYREQELNYDRKRISTRTVTLNLKQKG 746
S R+ E ++ I+ T ++ G
Sbjct: 412 S--RDIEDMGMQETINRNTFYSRMENLG 437
>gi|146319168|ref|YP_001198880.1| virulence-associated protein E [Streptococcus suis 05ZYH33]
gi|146321372|ref|YP_001201083.1| virulence-associated protein E [Streptococcus suis 98HAH33]
gi|253752213|ref|YP_003025354.1| phage primase [Streptococcus suis SC84]
gi|253754039|ref|YP_003027180.1| phage primase [Streptococcus suis P1/7]
gi|253755973|ref|YP_003029113.1| phage primase [Streptococcus suis BM407]
gi|145689974|gb|ABP90480.1| Virulence-associated protein E [Streptococcus suis 05ZYH33]
gi|145692178|gb|ABP92683.1| Virulence-associated protein E [Streptococcus suis 98HAH33]
gi|251816502|emb|CAZ52138.1| putative phage primase [Streptococcus suis SC84]
gi|251818437|emb|CAZ56266.1| putative phage primase [Streptococcus suis BM407]
gi|251820285|emb|CAR46774.1| putative phage primase [Streptococcus suis P1/7]
gi|292558805|gb|ADE31806.1| Virulence-associated protein E [Streptococcus suis GZ1]
gi|319758602|gb|ADV70544.1| virulence-associated protein E [Streptococcus suis JS14]
Length = 510
Score = 131 bits (329), Expect = 4e-28, Method: Composition-based stats.
Identities = 55/278 (19%), Positives = 102/278 (36%), Gaps = 19/278 (6%)
Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ-----EFLDLVSGYF-ES 479
+ +GI + +T T T T + S EF + F
Sbjct: 147 PHLIIVGNGIYNRKTRTLEPFTDTRVFTHKIQTNYNPHAQSPTIKGWEFNGWLLDLFNGD 206
Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539
+E+ + + A++ G + G GG+GK TL L G Q + + + +D+
Sbjct: 207 KELYQLSLQLL-NAVVRGESYAKMFWFVGEGGTGKGTLQELFINLIGRQNIASIKITDLD 265
Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEI-NAAKIKQMTGGDCMTARLNYGNTYS 598
N +L + +G + +I + I + +K+ + GGD +T + YS
Sbjct: 266 VNN-------RFTLAQAIGKQAIIGDDVQAGAVIRDTSKLFSLVGGDTVTVEKKGKDAYS 318
Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKW 658
+ N +R A RR +++PF+K + + A K + ++
Sbjct: 319 TFIKT-VVIQSTNTLPKIRGDYHAIRRRMVILPFNKHFKGK-PNRAIKNDYITRPSVLEY 376
Query: 659 FLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAW 696
LK V K D P + +E ++ D A+
Sbjct: 377 VLKTVIDLDFK--DFIEPSKSIDLLDEYQETIDPVLAF 412
>gi|320166803|gb|EFW43702.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 763
Score = 131 bits (329), Expect = 5e-28, Method: Composition-based stats.
Identities = 75/483 (15%), Positives = 149/483 (30%), Gaps = 63/483 (13%)
Query: 166 SEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFL-SCFGEEFYNG 224
+ + + + +E ++ N ++T REI L G E Y G
Sbjct: 279 NPLQCDAIDEALEEQERSNKAAEERRKLQLATPVN---EHTVREIREILMEHLGPEHY-G 334
Query: 225 SHDEWIPVVMAVHHETRGSSKGKEIARRWSKQG--STYDEENFNYKWDTFDFEEI----- 277
W +V AV G ++AR +S + YD +F W++ +
Sbjct: 335 QRKHWFGIVAAVK--CVLGEAGYDLAREFSARAGDPQYD-NDFPKNWESISPDHNWSMES 391
Query: 278 ---------------------GDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMF 316
D ++ + + A D + +
Sbjct: 392 LYKYVKGGSSALRCNQDFRIDSDEEEENEKPMQFSEDEPEFGNEDADALILKDLFAGNVI 451
Query: 317 SIYKK---GHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEP 373
S+ K ++Y W + N + L ++ + + M++ + +
Sbjct: 452 SVSSKSDDNFYIYNPRKVLW--ETATNADMNDLVGVELKKYLAKRIEKMEQQIQSSVSQK 509
Query: 374 EDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGS-----IFSITSDLLDS---- 424
+ R ++ KS + I + S LLD+
Sbjct: 510 KKELSPKLKKSAVKAFGVDRNLNSTRTQLKSAYKQAGGSRHANGIIVKLKSKLLDASFKA 569
Query: 425 ----SSRFLGEQ-DGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY-FE 478
L + +L+L TG + +E Y T + + G S
Sbjct: 570 KLDKDPYSLAIAGNKMLNLLTGVTRQRVREDYCTFALDVDYTPGSDLSIAQSFFSDVMCG 629
Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF-GNQYVINAEASD 537
E+++YF R +G LLG N A G G +GKS ++ +++ G + +
Sbjct: 630 DAEMIEYFQRVMGYCLLGNNAAHLMFFFLGRGSNGKSLILQILEAILKGQFFTWMVQG-- 687
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
IM+ + + + + + ++ + I A +K+ GD +
Sbjct: 688 IMKAGKKFEHQMPKLVAEVTTA--MRYADDPVHQWIAAQVVKK--AGDWYVDEEKHQGVI 743
Query: 598 SES 600
E
Sbjct: 744 DEI 746
>gi|58337070|ref|YP_193655.1| DNA primase [Lactobacillus acidophilus NCFM]
gi|58254387|gb|AAV42624.1| DNA primase [Lactobacillus acidophilus NCFM]
Length = 500
Score = 131 bits (329), Expect = 5e-28, Method: Composition-based stats.
Identities = 60/389 (15%), Positives = 133/389 (34%), Gaps = 31/389 (7%)
Query: 406 AQSLEAGSIFSITSDLL----DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFV 461
E S I S L D + LG +GI D + + + + + T +
Sbjct: 117 RNIKEVKSKLRIESKRLFLTNDPNLYALG--NGIFDAKKHKLLAYSPKCVFTSKIAVNYN 174
Query: 462 EGEPSQEFLDLV------SGYFESE-EVMDYFTRCVGMALLGGNKAQRFIHIR--GVGGS 512
F + E++ + + + + + + + G +
Sbjct: 175 PNAQEPRFDNWSFSKWINEDIAENKTDKIKLIWQTIKAVVNSNYSYHSAVFLIDSKKGSA 234
Query: 513 GKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDE 572
GK T L++ G + + + P L ++ +VI + + N
Sbjct: 235 GKGTFEALLENIAGPNNYATIKLNQFEKA---------PILATIVNKPLVIGDDNDPNRA 285
Query: 573 INAA-KIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIP 631
++++ K + GD + + YS P + N ++ DA +RR VI
Sbjct: 286 VDSSENFKSASTGDPIVINDKFEKAYSYKP-TCLIVQSLNALPVFKDNTDATYRRIRVIK 344
Query: 632 FDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTD 691
F+K + K E E +W +K G+ + E KE + +D
Sbjct: 345 FNKKYIENAKNRRVKDEYISNKELLEWIVKKAIDVKIDGVMIRTQESNEILKEN-QIDSD 403
Query: 692 TYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGI 751
++ + +D N + ++Y ++ E + + R +++ G+
Sbjct: 404 SFLQFTNDIIVPTTNGYRFKDDTYQAYKKWFEITGHQFGLE-TYRGFNKRMRE---DIGL 459
Query: 752 KREKIEKEWKSKRIIKGLKLKPAFESVDD 780
K+ + + + + ++LK +++D
Sbjct: 460 KQSRKMRNGRKMDVWLNIQLKTDSGNLND 488
>gi|227903638|ref|ZP_04021443.1| DNA primase [Lactobacillus acidophilus ATCC 4796]
gi|227868525|gb|EEJ75946.1| DNA primase [Lactobacillus acidophilus ATCC 4796]
Length = 498
Score = 131 bits (329), Expect = 5e-28, Method: Composition-based stats.
Identities = 60/389 (15%), Positives = 133/389 (34%), Gaps = 31/389 (7%)
Query: 406 AQSLEAGSIFSITSDLL----DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFV 461
E S I S L D + LG +GI D + + + + + T +
Sbjct: 115 RNIKEVKSKLRIESKRLFLTNDPNLYALG--NGIFDAKKHKLLAYSPKCVFTSKIAVNYN 172
Query: 462 EGEPSQEFLDLV------SGYFESE-EVMDYFTRCVGMALLGGNKAQRFIHIR--GVGGS 512
F + E++ + + + + + + + G +
Sbjct: 173 PNAQEPRFDNWSFSKWINEDIAENKTDKIKLIWQTIKAVVNSNYSYHSAVFLIDSKKGSA 232
Query: 513 GKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDE 572
GK T L++ G + + + P L ++ +VI + + N
Sbjct: 233 GKGTFEALLENIAGPNNYATIKLNQFEKA---------PILATIVNKPLVIGDDNDPNRA 283
Query: 573 INAA-KIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIP 631
++++ K + GD + + YS P + N ++ DA +RR VI
Sbjct: 284 VDSSENFKSASTGDPIVINDKFEKAYSYKP-TCLIVQSLNALPVFKDNTDATYRRIRVIK 342
Query: 632 FDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTD 691
F+K + K E E +W +K G+ + E KE + +D
Sbjct: 343 FNKKYIENAKNRRVKDEYISNKELLEWIVKKAIDVKIDGVMIRTQESNEILKEN-QIDSD 401
Query: 692 TYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGI 751
++ + +D N + ++Y ++ E + + R +++ G+
Sbjct: 402 SFLQFTNDIIVPTTNGYRFKDDTYQAYKKWFEITGHQFGLE-TYRGFNKRMRE---DIGL 457
Query: 752 KREKIEKEWKSKRIIKGLKLKPAFESVDD 780
K+ + + + + ++LK +++D
Sbjct: 458 KQSRKMRNGRKMDVWLNIQLKTDSGNLND 486
>gi|28379719|ref|NP_786611.1| prophage Lp4 protein 8, DNA primase/helicase [Lactobacillus
plantarum WCFS1]
gi|28272559|emb|CAD65486.1| prophage Lp4 protein 8, DNA primase/helicase [Lactobacillus
plantarum WCFS1]
Length = 500
Score = 131 bits (329), Expect = 5e-28, Method: Composition-based stats.
Identities = 53/397 (13%), Positives = 130/397 (32%), Gaps = 29/397 (7%)
Query: 314 AMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEP 373
+F ++ + + + W + + + K+ ++ D S +
Sbjct: 24 KVFKNQQEMRTVLRDEVEVWQLIHQTDKQAEANIKPKLPPLAGARIMFRHFDFCLFSHDE 83
Query: 374 EDNNKNSKSPRFWFNTDYR--RQNVEENSKAKSTAQSLEAGSIFSITS--DLLDSSSRFL 429
+ + +YR ++ + + + Q+L+ + + L +
Sbjct: 84 SERMAAYLPNDGIYTQNYRYLKRLIALMYPSYNLRQALDVIYHLEMMAPVRALTIDRYLV 143
Query: 430 GEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ--------EFLDLVSGYFESEE 481
+GI +L Q + + + T T + + + + D ++ +E
Sbjct: 144 PVNNGIWNLHQHQLIPFSPKYVFTTKIATNYRDNATTPNIKGWTIDNWFDELA--CGDDE 201
Query: 482 VMDYFTRCVGMALLGGNKAQRFIHIRGV-GGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540
+++ + L G ++ I + G SGK T LI G V + ++
Sbjct: 202 IVELLWEVINDCLNGNYTRKKAIFLFSELGNSGKGTFQELITNLVGMDNVGTLKVNEF-- 259
Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEI-NAAKIKQMTGGDCMTARLNYGNTYSE 599
L L+G + I + + I +++ + GD + + Y+
Sbjct: 260 -------DVRFRLAGLVGKTVCIGDDIAPDIYIKDSSNFNSVVTGDLVNIEFKGQDGYTS 312
Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWF 659
+ T N N RR +++PF+ + +++ + + + ++
Sbjct: 313 ALRC-TIVQSCNGLPNFHNKG-GTMRRLVIVPFNNHFQGKGDNWSIRNDYITRKDVLEYV 370
Query: 660 LKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAW 696
L KA +PEV KA + + +
Sbjct: 371 L--YKALQLDFDKFSVPEVSKKALADFELDNNPLIGF 405
>gi|260102307|ref|ZP_05752544.1| hypothetical protein HMPREF0518_1038 [Lactobacillus helveticus DSM
20075]
gi|260083885|gb|EEW68005.1| hypothetical protein HMPREF0518_1038 [Lactobacillus helveticus DSM
20075]
Length = 508
Score = 130 bits (328), Expect = 6e-28, Method: Composition-based stats.
Identities = 78/442 (17%), Positives = 155/442 (35%), Gaps = 39/442 (8%)
Query: 368 DLSEEPEDNNKNSKSPRFWFNTDYRR-QNVEENSKAKSTAQSLEAGSIFSITSDLLD-SS 425
D E + + ++++ +YR N+ N TA + A D D S
Sbjct: 76 DYWEPVDLAGIRNIVASYFYDDEYRHAYNLLSNKVVNDTANLVTALMDRRKYEDTFDQSD 135
Query: 426 SRFLG-EQDGILD--LETGQKVKPTKELYITKSTGTPFVEGEP--SQEFLDLVSGYFESE 480
L D + T Q V+ + E Y T +G+ + ++L + E
Sbjct: 136 PLNLNYIPFDYYDYNIMTNQNVEHSPERYFTYKRDYDLEDGDAECTNQWL--LESLGGDE 193
Query: 481 EVMDYFTRCVGMALLGGNK-AQRFIHIRGVGGSGKSTLMN-LIKYAFGNQYVINAEASDI 538
++++ +G + K Q I I G GG GKS ++ G++ + I
Sbjct: 194 KLLELIKILIGASFYRSYKPLQFVIFITGEGGDGKSEFLDYWGSKLIGSRTNSHLSFDQI 253
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA--AKIKQMTGGDCMTARLNYGNT 596
++ N +L L + + N + ++ KQ+TGG+ A +
Sbjct: 254 VKT------GTNFALAELYHKELNTYDDLNASYIDSSMMGTAKQLTGGNPFDAEVKNKRN 307
Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAK 656
+ + T N ++N A RR + + I N + + TK
Sbjct: 308 LRFANYA-TMVFATNDMPEIQNLGFAEKRRIYIFKW-HKIPNFEEKYGMLRITKERGAFA 365
Query: 657 KWFLKG---VKAYISKGLD----VDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLW- 708
K + K G + E + ++ + +D ++ C+
Sbjct: 366 KQCIDAFSIAKLRRDTGESQQDVLPKCEAIEENWKQFQLDSDPVARFVASRCEADPEYTG 425
Query: 709 -----EESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSK 763
E H L ++ ++ ++ N K ++ R +K+ GF +++ +K+
Sbjct: 426 DHGWIVEKHDLYTNFIDWADK-HNLKVKGMTERKFNKKIKKLGFQEVVRKV----SYKAT 480
Query: 764 RIIKGLKLKPAFESVDDNSNII 785
R+ + + L P D +S I
Sbjct: 481 RVWQNMMLLPDGVENDTDSKIG 502
>gi|300941010|ref|ZP_07155532.1| toprim domain protein [Escherichia coli MS 21-1]
gi|300454249|gb|EFK17742.1| toprim domain protein [Escherichia coli MS 21-1]
Length = 500
Score = 130 bits (327), Expect = 8e-28, Method: Composition-based stats.
Identities = 40/209 (19%), Positives = 70/209 (33%), Gaps = 19/209 (9%)
Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
R +G ++G+LD + G + ++ F + F +
Sbjct: 299 RRLIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVEGETLETHAPAFWRWLDRAAG 358
Query: 479 S-EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
E D + M L Q F+ + G GGSGKS + + G +A
Sbjct: 359 GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIET 418
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
+ R L G ++ + + E + A +K +TGGD ++ Y + Y
Sbjct: 419 LESPRER---------AALTGFSLIRLPD-QEKWSGDGAGLKAITGGDAVSVDPKYRDAY 468
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRR 626
S + V N + + RR
Sbjct: 469 STHIPA-VILAVNNNPMRFTDRSGGVSRR 496
>gi|217979240|ref|YP_002363387.1| hypothetical protein Msil_3116 [Methylocella silvestris BL2]
gi|217504616|gb|ACK52025.1| conserved hypothetical protein [Methylocella silvestris BL2]
Length = 841
Score = 129 bits (325), Expect = 1e-27, Method: Composition-based stats.
Identities = 54/300 (18%), Positives = 103/300 (34%), Gaps = 39/300 (13%)
Query: 11 KQAIHNGFKLI-PLRLGDK--------RPQRLGK----------------WEEQLLSSEK 45
K+ G++ + PL D RP+ +GK W+ +
Sbjct: 38 KELWDRGYRALRPLIPHDATMSESSNIRPELIGKIPGKRLANGTWVGFHDWQTHSTTDAD 97
Query: 46 IDKLP--ACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKIL 103
+ + G G + G+ + A DID+ D + + + G R+G+ PK L
Sbjct: 98 LVEWASWGAGVGLMTGLVSS-VLAVDIDTLDHGLSARAAELMREMLGPARPRVGRAPKAL 156
Query: 104 IPFRMNK--EGIKKK-KTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVE 160
+R + +K K E + +++ + V HPKT K Y+W FK
Sbjct: 157 FLYRCAQPVPFLKVKFDGPEGKRELVELSTDRRQIVMRGTHPKTGKPYSWPEGLPPFK-- 214
Query: 161 DTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNRE--ITAFLSCFG 218
+ ++ E VE F + + + + + + E A S
Sbjct: 215 ELTEVTPEQVEAFFLELSHVMPNAEFRGRKLSAGSGSGGDQTKFTGSAEAVARAVRSLPN 274
Query: 219 EEFYNGSHDEWIPVVMAVHHETRGS-SKGKEIARRWSKQ---GSTYDEENFNYKWDTFDF 274
E + D W+ ++ A+ + +A+ WS++ D + +W
Sbjct: 275 TEALYPTRDSWLDMLYAIKAALPDDPGAAEALAQEWSEKYDGPDGNDPDYVAQEWRKMVP 334
>gi|160944666|ref|ZP_02091893.1| hypothetical protein FAEPRAM212_02180 [Faecalibacterium prausnitzii
M21/2]
gi|158443850|gb|EDP20854.1| hypothetical protein FAEPRAM212_02180 [Faecalibacterium prausnitzii
M21/2]
Length = 437
Score = 129 bits (324), Expect = 2e-27, Method: Composition-based stats.
Identities = 58/408 (14%), Positives = 123/408 (30%), Gaps = 23/408 (5%)
Query: 344 WSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAK 403
W KI + + + + Y + +
Sbjct: 10 WVGDNGKIIEPLFADYFLSLHPMRCFQGRLFTVDGMVEDEAPLKKEIYEQVRYYATTSVA 69
Query: 404 STAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEG 463
+ + + S+ + + + ++G G ++ Y +V
Sbjct: 70 RRIEHIVQAIKLACASEPPEIQTDRIHVRNGTY-FVDGHFTP--EKEYCMNRLPISYVPE 126
Query: 464 EPSQ-EFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIK 522
P+ +L ++ EE + +G LL KAQ+ + + G GG GKS + +++
Sbjct: 127 APAPTRWLQFLNELLY-EEDIPALQEYIGYCLLPVTKAQKMLLMVGKGGEGKSRIGLILR 185
Query: 523 YAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM- 581
FGN + NR AG L +++ + IK +
Sbjct: 186 ELFGNSMYTG-SLQKVETNRFARAG--------LEYKLLLVDDDMKTEALPQTNNIKTLV 236
Query: 582 TGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR-- 639
T D + + + + + + ++RR +++ + R
Sbjct: 237 TLEDKIDIERKGQQSVQGTLYVRFACFGNGSLHALYDKSNGFYRRQLLLTTKEKPLGRVD 296
Query: 640 DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWI-- 697
D K+ W L+G+ I I E +E + + ++
Sbjct: 297 DPFLIDKMR-NEKEGILLWALEGLHRLIQNNYQFTISERTAANLKEAMEQGNNILGFLKS 355
Query: 698 DDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK 745
+ +I + +S K Y + L K ++ T +LK
Sbjct: 356 EGYFEIRKGAKCKSTDFYKVYERWCLDNLE---KPLAASTFIHHLKDN 400
>gi|227894341|ref|ZP_04012146.1| DNA primase [Lactobacillus ultunensis DSM 16047]
gi|227863851|gb|EEJ71272.1| DNA primase [Lactobacillus ultunensis DSM 16047]
Length = 508
Score = 129 bits (324), Expect = 2e-27, Method: Composition-based stats.
Identities = 84/513 (16%), Positives = 165/513 (32%), Gaps = 68/513 (13%)
Query: 293 HHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKIT 352
G LLA D F D N Y + L
Sbjct: 38 TRGWRAKPNLLAKTILD----------DNEMFSVVDDNGKSTSYIYNGDYWEPVDL---- 83
Query: 353 ASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAG 412
A I N + S D + Y + + + + +L
Sbjct: 84 AGIRNIVASYFYDDE-------------------YRHAYNLLSSKVVNDTANLVTALMDR 124
Query: 413 SIFSITSDLLDS-SSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP--SQEF 469
+ T D D + ++ ++ T Q V+ + E Y T +G+ + ++
Sbjct: 125 RKYEDTFDQSDPLNLNYIPFDYYDYNIMTNQNVEHSPERYFTYKRDYDLEDGDAECTNQW 184
Query: 470 LDLVSGYFESEEVMDYFTRCVGMALLGGNK-AQRFIHIRGVGGSGKSTLMN-LIKYAFGN 527
L + E++++ +G + K Q I I G GG GKS ++ G+
Sbjct: 185 L--LESLGGDEKLLELIKILIGASFYRCYKPLQFVIFITGEGGDGKSEFLDYWGSKLIGS 242
Query: 528 QYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA--AKIKQMTGGD 585
+ + I++ N +L L + + N + ++ KQ+TGG+
Sbjct: 243 RTNSHLSFDQIVKT------GTNFALAELYHKELNTYDDLNASYIDSSMMGTAKQLTGGN 296
Query: 586 CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQ 645
A + + + T N ++N A RR + + I N + +
Sbjct: 297 PFDAEVKNKRNLRFANYA-TMVFATNDMPEIQNLGFAEKRRIYIFKW-HKIPNFEEKYGM 354
Query: 646 KLETKYTLEAKKWFLKG---VKAYISKGLD----VDIPEVCLKAKEEERQGTDTYQAWID 698
TK K + K G + E + ++ + +D ++
Sbjct: 355 LRITKERGAFAKQCIDAFSIAKLRRDTGESQQDVLPKCEAIEENWKQFQLDSDPVARFVA 414
Query: 699 DCCDIGENLW------EESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIK 752
C+ E H L ++ ++ ++ N K ++ R +K+ GF ++
Sbjct: 415 SRCEADPEYTGDHGWIVEKHDLYTNFIDWADK-HNLKVKGMTERKFNKKIKKLGFQEVVR 473
Query: 753 REKIEKEWKSKRIIKGLKLKPAFESVDDNSNII 785
+ +K+ R+ + + L P D +S I
Sbjct: 474 KV----SYKATRVWQNMMLLPDGVENDTDSKIG 502
>gi|269203634|ref|YP_003282903.1| putative phage primase [Staphylococcus aureus subsp. aureus ED98]
gi|262075924|gb|ACY11897.1| putative phage primase [Staphylococcus aureus subsp. aureus ED98]
Length = 618
Score = 129 bits (323), Expect = 2e-27, Method: Composition-based stats.
Identities = 78/501 (15%), Positives = 174/501 (34%), Gaps = 51/501 (10%)
Query: 292 YHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTA-DTKAWYKKDKNNVYIWSLTLDK 350
+H + I LL SD N A+ YK +Y D K ++ L ++
Sbjct: 134 FHLNRKIKNNLLGMGESDGRNDAL---YKHKMAIYALKDVKKILNFINEFIFADKLPSEE 190
Query: 351 ITASIMNFLVSMKEDVFD-LSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSL 409
I+ + V KE FD +++ + F D + + + + K
Sbjct: 191 ISTIARDQAVDTKEMTFDTIAKSIVNQYYVRFYNNVLFFRDDEGKFINDENMLKRKIHQF 250
Query: 410 ----EAGSIFSITSDLL---------DSSSRFLGEQDGILDLETGQKVKPTKELYITKST 456
++ ++ + LL + S + +G L G+ + + +
Sbjct: 251 LDQKDSRNVEEVYKQLLLMSPIITLGEDESFEIHFNNGY--LHEGRFYEMDSKTFTPYHI 308
Query: 457 GTPFVEGEPSQEFLDLVSGYF--ESEEVMDYFTRCVGMALLGGNKA-----QRFIHIRGV 509
+ + E +D + +E+ + L+ NK +F G
Sbjct: 309 DVNYNPDAEAVEVVDNYLNHLSNNNEDYKKLILEVLAHTLI-INKEFKRMLAKFFIFVGD 367
Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569
GG+GK TL+ +I+ + D+ R + + G + + + +
Sbjct: 368 GGNGKGTLLTIIRAILNRKNCSGLSIGDMADERYF---------VTMQGKLVNLGDDIED 418
Query: 570 NDEINAAK--IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627
N +K ++ D ++ R + +E + + N L +++ RR
Sbjct: 419 EPINNKQMKALKNISTCDFVSTRQLFQQA-TEVEMTLSLIFTSNHILKSWEKGESYKRRV 477
Query: 628 IVIPFDKPIANRDASFAQKLETKYTLEAKKW---FLKGVKAYISKGLDVDIPEVCLKAKE 684
+ +P A ++ +F QKL + LE W ++ + + + EV K +
Sbjct: 478 MWLPIYTKPAKKEKNFIQKLTQQDALE--YWIKLIVEAYERLYAN-EKFTVSEVVEKFND 534
Query: 685 EERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQ 744
+ + + + ++ D + + + + + Y + E+ D S + V +++
Sbjct: 535 QYHEENNNFLLYLQD-FERKDFINMKPKQIYDEYEAWAEEN---DLHPQSKKQVKDTIEK 590
Query: 745 KGFIGGIKREKIEKEWKSKRI 765
K + +K +I + I
Sbjct: 591 K-YGLVVKGRRINGSTQRVYI 610
>gi|291539832|emb|CBL12943.1| phage/plasmid primase, P4 family, C-terminal domain [Roseburia
intestinalis XB6B4]
Length = 516
Score = 128 bits (322), Expect = 3e-27, Method: Composition-based stats.
Identities = 58/358 (16%), Positives = 126/358 (35%), Gaps = 25/358 (6%)
Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE-FLD--LVSGYFESEEV 482
+ Q+GI + E + T + + ++ E Q ++D ++ +
Sbjct: 170 KHMIVFQNGIYNAEKDALINSTSKYPVLFEINAEYLGNEEVQTPYMDKIIMQATGGDVDT 229
Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542
++ F +C+G G +A++F SGKS + I G + ++
Sbjct: 230 LERFYQCLGYIYSQGTEAKKFFVFGTAPDSGKSIIGEFIAKTIGEGNISTISLNEF---- 285
Query: 543 PPEAGKANPSLIRLMGSRIVIISETNEN--DEINAAKIKQMTGGDCMTARLNYGNTYSES 600
+ L + + + D+ + +K +TG + Y
Sbjct: 286 -----GSRFKLGSISQRILNYNMDLPAGMLDKKSVQLLKLLTGDAKIDCEEKYVQN-RTV 339
Query: 601 PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKW 658
N + ++ D+A++ R ++IPF K IA NRD S +KL K
Sbjct: 340 THHCKFLFATNHPIQLKEDDEAFYHRMLLIPFVKSIADENRDYSMPEKLW-KERHAIATR 398
Query: 659 FLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDT--YQAWIDDCCDI---GENLWEESHS 713
+ E+ + E R+ + + CC++ E+ + + +
Sbjct: 399 AAHAYRDLYRNNFVFHESELADRMLNEWRENCRQKCLKEFFYQCCEVVKEREDAFVPTDA 458
Query: 714 LAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771
L K+Y ++ ++ + R S + L + F + +++ G++L
Sbjct: 459 LFKAYRKFCAEKDIHIRD--SDKPQFSRLFKNTFGIASTKRRVDGYNSPVNGYLGIQL 514
>gi|150396564|ref|YP_001327031.1| hypothetical protein Smed_1346 [Sinorhizobium medicae WSM419]
gi|150028079|gb|ABR60196.1| hypothetical protein Smed_1346 [Sinorhizobium medicae WSM419]
Length = 793
Score = 128 bits (322), Expect = 3e-27, Method: Composition-based stats.
Identities = 55/263 (20%), Positives = 91/263 (34%), Gaps = 24/263 (9%)
Query: 11 KQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLP-ACGFGFVCGVGEQPLYAFD 69
+ I NG++ +P K P + W ++ID GV + A D
Sbjct: 17 RALIENGYRYVP--AKGKGPI-IKDWPNFSQRPDQIDGYLRKHADHRNTGVLTGDIVAVD 73
Query: 70 IDSKDEKTANTFKDTFEILHG--TPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQG--- 124
+D+ D A+ + G R+G+ PK L F+ + K G
Sbjct: 74 VDAPDAAIADQLIARLMAIPGAKRAPYRVGKAPKCLFIFKATEPRRKASTGEYLIGGSKC 133
Query: 125 HLDILGCGQYFVAYNIHPKTKKEYTWTTP-PHRFKVEDTPLLSEEDVEYLFKFFQEITVP 183
++ILG GQ FVAY H +T Y W+ P + D P ++ + V+ I
Sbjct: 134 QVEILGQGQQFVAYGNHAETGLPYVWSNGEPLSIPLHDLPEITPDAVDAFLADADAILAK 193
Query: 184 LVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGS 243
K + R F + + D W+P + + + G+
Sbjct: 194 AGTPMKKKSEPRQ---------QGRGADTFWQRVNSAALDNT-DRWVPSLFSSARKEAGT 243
Query: 244 SKGKEIARRWSKQGSTYDEENFN 266
R SK+ EE+ +
Sbjct: 244 GA----WRITSKELGRDLEEDLS 262
>gi|170016448|ref|YP_001727367.1| DNA primase [Leuconostoc citreum KM20]
gi|169803305|gb|ACA81923.1| DNA primase [Leuconostoc citreum KM20]
Length = 467
Score = 127 bits (319), Expect = 7e-27, Method: Composition-based stats.
Identities = 54/332 (16%), Positives = 114/332 (34%), Gaps = 20/332 (6%)
Query: 421 LLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGE-PSQEFLDLVSGYFES 479
+ +G LD+ T + + + P + + P+ + + +
Sbjct: 120 DFTDKPYMVSFTNGTLDMRTLEIKPNAPQYHALGGLDYPVSDKDLPTPKTDEFFTRLLGD 179
Query: 480 EEVMDYFTRCVGMALLGGN-KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538
E + + +G Q F+ + G GG+GK + + Y Y N +
Sbjct: 180 -ENAELLYKFIGYGFKRNYLPFQNFVILYGKGGNGKG---SALTYIGQQIYSGNVSELSL 235
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQ-MTGGDCMTARLNYGNTY 597
+A + L+G I S+ N +K ++G + +
Sbjct: 236 ------QAFGDKFKTVGLVGKYANIGSDIPSYYMPNTENLKLAVSGKERFELESKGVQAF 289
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP-IANRDASFAQKLETKYTLEAK 656
S + T F N ++ D RR +V+ +D E + E
Sbjct: 290 SIVNYA-TLFFSANDLPNIK-RDSGLDRRPLVVTTQGKGFTTKDGKSDFFDEAELLDERP 347
Query: 657 KWFLKGVKAYI--SKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
+ K +K ++ + ++IPE KA E + D W+D+ + ++ + +
Sbjct: 348 AFTRKVIKLFMDAERAKTLNIPENVQKATAEWLKSADIVSQWLDEHTEEAKDRRPTAKYM 407
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746
+ +S R+ E ++ I+ T ++ G
Sbjct: 408 YQQFS--RDVEDMGMKETINRNTFYSRMEHLG 437
>gi|229192873|ref|ZP_04319831.1| hypothetical protein bcere0002_45240 [Bacillus cereus ATCC 10876]
gi|228590712|gb|EEK48573.1| hypothetical protein bcere0002_45240 [Bacillus cereus ATCC 10876]
Length = 741
Score = 127 bits (319), Expect = 8e-27, Method: Composition-based stats.
Identities = 103/763 (13%), Positives = 239/763 (31%), Gaps = 85/763 (11%)
Query: 34 GKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDID--SKDEKTANTFKDTFEILHGT 91
W E+ + G GF+ E DID ++ + +D +++
Sbjct: 29 NTWSTFEEVLEEYQQGDYNGIGFMF-SKEDVFIGIDIDHCVQEGEFTELAEDIMKLVPSY 87
Query: 92 P-IVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTW 150
G I I + ++ L+I G+YF
Sbjct: 88 TEYSPSGDG--IHIIAKGKIPLRGPGTGKKNPSIGLEIYRHGRYFTFTGASI-------- 137
Query: 151 TTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNN--NRQYTNR 208
P + E+ +L + + + + VP +++ R + ++
Sbjct: 138 NNLPVKESTENLKVL----FQKYIEKKEVLVVPKTPSVSRESNINNLSSSELWERMFNSK 193
Query: 209 EITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEEN-FNY 267
A F NG H MA+ + + + +K S + E
Sbjct: 194 NGRAIRDLFCGVLINGDHSS---TDMALANHLAFWTD-----KDAAKMDSMFRESALIRD 245
Query: 268 KWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYT 327
KWD + G T + + ++ H + SD + + ++ H+L
Sbjct: 246 KWDKPHSSD-GRTYGQMTIEKAIESTHSSV----------SDYNHSSDYNRKNDVHYLVN 294
Query: 328 ADTK-------AWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDL-----SEEPED 375
+ +W+ ++ + + N +V + D+ + +
Sbjct: 295 EQGETTGIKKGSWWSENNGRTSFLHHIMVEYIL-QENKIVRFPNEDGDIYVYNRATGIYE 353
Query: 376 NNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGI 435
+K + R ++ E + + + + ++ S ++ ++G+
Sbjct: 354 IDKTCRKLRSLV------RDAEILKRNQVREVQEYIMDMSPVVNEE---SKNYIAVENGL 404
Query: 436 LDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESE-EVMDYFTRCVGMAL 494
L L++ + + T +++TK T + + + + G L
Sbjct: 405 LHLDSMEFKEFTPMVFVTKKIPTKYNSKAFDSFVERTLMKVSDGHLPTIKNIHEMFGAVL 464
Query: 495 LGGNKAQRFIHIRG-VGGSGKSTLMNLIKYAFGN-QYVINAEASDIMQNRPPEAGKANPS 552
+ ++ G +GKST++ +I+ F + + + + +N +
Sbjct: 465 YPTLLVPKMFYLYGRSAHNGKSTVLYMIQKTFNSGENISAISPQKLAENAFAGSS----- 519
Query: 553 LIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612
+ G I+ + + ++ +K + G + G + N
Sbjct: 520 ---IYGKLANIVDDQPDEVIRDSGTLKTIITGGYVDIEYK-GKGSQTVQMNTVCITASNH 575
Query: 613 HLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQ-----KLETKYTLE-AKKWFLKGVKAY 666
+ R + +R ++PFD N ++ +LET E K + +K
Sbjct: 576 YPNFREHGNQINKRLHILPFDHNFMNDPDRISEMESMKQLETVTAREYVLKLAVDAIKEM 635
Query: 667 ISKGLD-VDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQE 725
+ +D + E +AK+ + D + + D K+Y E+ +
Sbjct: 636 KQRTVDILTYNEKAEEAKQNFMEYNDPLIDFFFEY-DKQFFEEVRGTDALKAYDEWCKDN 694
Query: 726 LNYDRKRISTRTVTLNLKQK-GFIGGIKREKIEKEWKSKRIIK 767
+ + + + + K G K+ KI K+ + K
Sbjct: 695 --HVQYPLGQKQFKDAVCTKYGMEWKDKKVKINSTSKTVKGFK 735
>gi|329115876|ref|ZP_08244593.1| nucleoside triphosphatase, D5 family [Streptococcus parauberis NCFD
2020]
gi|326906281|gb|EGE53195.1| nucleoside triphosphatase, D5 family [Streptococcus parauberis NCFD
2020]
Length = 426
Score = 127 bits (318), Expect = 1e-26, Method: Composition-based stats.
Identities = 53/312 (16%), Positives = 107/312 (34%), Gaps = 26/312 (8%)
Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ--------EFLDLVSGY 476
+ + + + +T Q + ++ +T+ T + ++L + +
Sbjct: 51 NPEYTALGNCVYSYKTKQFYDFSPDIPVTRKIETNYNPEATEPDIKGWSPTKWLKEL--F 108
Query: 477 FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEAS 536
E+ D + + +R + G GG+GK TL I G V + + +
Sbjct: 109 DNDNEMYDLVIQMFKACITNE-PLERIFWLYGAGGTGKGTLQQFIINLVGLDNVASLKIT 167
Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI-NAAKIKQMTGGDCMTARLNYGN 595
++ ++R + L+G IVI + +N I + +++ +T GD MT
Sbjct: 168 ELARSRFTTSI--------LLGKSIVIGDDIQQNAMIKDTSELFSLTTGDIMTIEEKGLK 219
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
YS T N + DA RR ++IPF N+ +K
Sbjct: 220 PYS-LRLQMTVIQSSNGLPIMDGDKDAISRRLMIIPFTSKYKNKPNKAIKKYYIN-NKNV 277
Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIG-ENLWEESHSL 714
++ LK I P + + + A+I+D + + + +
Sbjct: 278 LEYILKLA---IETPTKEIYPSSSKELVHDYLLEINPVLAFIEDFFTDSLNSEFIPNSFV 334
Query: 715 AKSYSEYREQEL 726
+ Y E
Sbjct: 335 WHVWKNYLEYNN 346
>gi|261492854|ref|ZP_05989401.1| alpha replication protein of prophage CP-933I [Mannheimia
haemolytica serotype A2 str. BOVINE]
gi|261311536|gb|EEY12692.1| alpha replication protein of prophage CP-933I [Mannheimia
haemolytica serotype A2 str. BOVINE]
Length = 313
Score = 126 bits (317), Expect = 1e-26, Method: Composition-based stats.
Identities = 59/344 (17%), Positives = 116/344 (33%), Gaps = 66/344 (19%)
Query: 305 SRFSDAYNKAMFSIYKKGHFLYTADTKAW--YKKDKNNVYIWSLTLDKITASIMNFLVSM 362
F+D Y KA+F G +Y + W K D V + +K +N + S+
Sbjct: 29 QYFNDWYKKALFKDEITG-LVYFYNGIKWEAIKDDHLRVAVSEFFDEKEVGYNINKVDSL 87
Query: 363 KEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLL 422
+ + S+ E N L
Sbjct: 88 FKLISLKSKPIEKPN--------------------------------------------L 103
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFV-EGEPSQEFLDLVSGYFE-SE 480
D F+ +G+L+ +TG+ + ++ ++ + E +P F ++ + +
Sbjct: 104 D----FIPFLNGVLNRKTGEFLPHNEKYFLRNVLPFDYSLEDKPMPNFEKWINWVSQNDK 159
Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540
+ M L + Q F+ I GVGGSGKS + G + + D+ +
Sbjct: 160 QKKRTILAAFYMILTNSYEWQLFLEITGVGGSGKSIFNEIAIMLVGEENSTSVYLKDLEK 219
Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600
I+L+ ++ + + A +K +TG D M Y N +
Sbjct: 220 ASSR---------IKLLDKILIFAPDQGR-IVTDGAVLKGLTGDDVMHFEPKYKNAFDAR 269
Query: 601 PASFTPFIVPNKHLFV-RNPDDAWWRRYIVIPFDKPIANRDASF 643
S F++ N + + RR ++ F + + ++ +
Sbjct: 270 VKS--IFLMTNNEPIIFTENNGGIARRRVLFHFSEKVPEKNERY 311
>gi|315634869|ref|ZP_07890151.1| bacteriophage P4 DNA primase [Aggregatibacter segnis ATCC 33393]
gi|315476421|gb|EFU67171.1| bacteriophage P4 DNA primase [Aggregatibacter segnis ATCC 33393]
Length = 348
Score = 125 bits (313), Expect = 3e-26, Method: Composition-based stats.
Identities = 57/359 (15%), Positives = 119/359 (33%), Gaps = 38/359 (10%)
Query: 442 QKVKPTKELYITKSTGTPFVEGEP-SQEFLDLVSGYFESEEVMDYFTRCVG--MA-LLGG 497
+ +E ++T + E + F + ++ + +E +G A L
Sbjct: 2 EFSPHCRENWLTSFIPYDYTNQEENTPHFDNWLNFVADGKEDKK--QAILGALYAILTNR 59
Query: 498 NKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLM 557
+ Q F + G GGSGKS + G Q D+ + R E +
Sbjct: 60 HNWQLFFEVTGDGGSGKSVFAQIATMLAGEQNTERGRLVDLDEPRGRE---------NFV 110
Query: 558 GSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVR 617
+++ E + + +K ++ GD + + + + + IV N+
Sbjct: 111 NKTLILCLEQSRYGG-DGGGLKSISAGDLVNIDPKHKSKFKADIPAIVL-IVNNEPTRFT 168
Query: 618 NPDDAWWRRYIVIPFDKPIAN--RDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDI 675
+ RR ++ FDK + RD K+E + K ++ K + +
Sbjct: 169 ERNGGIERRRVIFHFDKVVPESKRDPHLMDKIEAEAGGIIYK-LIQAFKNPLDAKKALTK 227
Query: 676 PEVCLKAKEEERQGTDTYQAWID------DCCDIGENLWE---ESHSLAKSYSEYREQEL 726
+ +A E + +D + + +G + L +Y + E
Sbjct: 228 QKESAEALEI-KMNSDHLTVFCSYFLTSQESNGLGIGNAKTGLPRTHLYPAYLVFIEANN 286
Query: 727 NYDRKRISTRTVTLNLKQKGFIGGIK-----REKIEKEWKSKRIIKGLKLKPAFESVDD 780
+ ++ T +L+Q G R +I + R I + K E ++
Sbjct: 287 --IQNALTLNNFTESLRQ-GLAQHKNKYPYTRRRITSGAEKGRYITNVHFKNFDEFYNE 342
>gi|126347806|emb|CAJ89526.1| putative DNA primase/helicase [Streptomyces ambofaciens ATCC 23877]
Length = 286
Score = 124 bits (312), Expect = 4e-26, Method: Composition-based stats.
Identities = 39/205 (19%), Positives = 66/205 (32%), Gaps = 22/205 (10%)
Query: 372 EPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGE 431
EP + R + RQ + + + I + LLD+ L
Sbjct: 37 EPRHRRHQADGRRA---EAHHRQLALSTTGINAMLTQATSAPGMVINAALLDADPYALCT 93
Query: 432 QDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEE----VMDYFT 487
DG++DL TG P T P+ + ++ F + ++ F
Sbjct: 94 PDGMVDLRTGLVKAPDPPRTSTHGPPPSDPRTMPTPRWERFLADAFGEDAEAQHMVSDFQ 153
Query: 488 RCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAG 547
+G ++ G Q + G GKS L++++ G+ Y A
Sbjct: 154 LLLGYSVTGDVGGQVPPLLFDSGTIGKSVLLDVLMRLLGD-YADAAPLG----------- 201
Query: 548 KANPSLIRLMGSRIVIISETNENDE 572
S L G R + SE D+
Sbjct: 202 ---FSWHALHGRRAIFCSEVKHGDK 223
>gi|94994243|ref|YP_602341.1| DNA primase [Streptococcus phage 10750.2]
gi|94547751|gb|ABF37797.1| DNA primase [Streptococcus phage 10750.2]
Length = 306
Score = 124 bits (312), Expect = 4e-26, Method: Composition-based stats.
Identities = 43/259 (16%), Positives = 94/259 (36%), Gaps = 19/259 (7%)
Query: 478 ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
++++ + V +L G ++ I G G GK T +I G + V + +
Sbjct: 3 GDKDLVQLLWQVVAASLNGNYSYRKSIWFVGDGNDGKGTFQQMISNLVGFKNVAPLKLNQ 62
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAA-KIKQMTGGDCMTARLNYGNT 596
+ L + G ++I + ++ + + G+ ++ N
Sbjct: 63 FSE---------RFGLAIIEGKTVIIGDDVQAGIYVDESSNFNSVVTGEPVSIEKKGENP 113
Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAK 656
Y + N +N + +RR I+IPF K ++ + ++A K + E
Sbjct: 114 Y-MAIFKKNVIQSTNGMPVFKNKSNGTYRRIIIIPFKKTFSSAEDNWAIKDDYINRKEVL 172
Query: 657 KWFLKGVKAYISKGLDVD---IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHS 713
++ L + S LD D P+V E ++ +T ++++ + E+
Sbjct: 173 EYVL-----WKSINLDFDKFYEPKVTQDRMREFKEENNTILKFLNEYLEDVESTRLPVRF 227
Query: 714 LAKSYSEYREQELNYDRKR 732
L Y + + K+
Sbjct: 228 LWDVYQSWCTENGVTKPKK 246
>gi|229099129|ref|ZP_04230063.1| hypothetical protein bcere0020_43520 [Bacillus cereus Rock3-29]
gi|228684357|gb|EEL38301.1| hypothetical protein bcere0020_43520 [Bacillus cereus Rock3-29]
Length = 714
Score = 124 bits (312), Expect = 5e-26, Method: Composition-based stats.
Identities = 109/765 (14%), Positives = 247/765 (32%), Gaps = 84/765 (10%)
Query: 34 GKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDID--SKDEKTANTFKDTFEILH-G 90
W E+ + G GF+ E DID ++ + + KD I+
Sbjct: 8 NTWSTFEEVLEEYQQGDYSGIGFMF-SKEDAFIGIDIDHCVQEGEFTDLAKDIMTIVPSY 66
Query: 91 TPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTW 150
T GQ I I + ++ L+I G+YF
Sbjct: 67 TEYSPSGQG--IHIIAKGKLPLRGPGTGKKNPALGLEIYRHGRYFTFTA----------- 113
Query: 151 TTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNN-----RQY 205
+ VE++ +E K+ ++ VP + + ++ R +
Sbjct: 114 -NSINNLPVEES---TENLKVLFQKYIEKKEVPAAPKTLYVSRKSNISILSDAELWERMF 169
Query: 206 TNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEEN- 264
++ A F NG H MA+ + + + +K S + E
Sbjct: 170 DSKSGAAIKDLFQGILINGDHSS---TDMALANHLAFWTD-----KDAAKMDSMFRESAL 221
Query: 265 FNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHF 324
KWD + G T + + ++ H + + N A + + ++G
Sbjct: 222 IRDKWDKPHSSD-GRTYGQMTIEKAIESTHSSVSD--------YNRKNDAHYLVNEQGKT 272
Query: 325 LYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDL-----SEEPEDNNKN 379
+W+ ++ + + N +V + D+ + + +K
Sbjct: 273 T-GIKKGSWWSENNGRTSFLHHIMVEYIL-QENKIVRFPNEDGDIYVYNKATGIYELDKT 330
Query: 380 SKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLE 439
+ R ++ E + + + + ++ S ++ ++G+L L+
Sbjct: 331 CRKLRSLV------RDAEILKRNQVREVQEYIMDMSPVVNEE---SKNYIAVENGLLHLD 381
Query: 440 TGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESE-EVMDYFTRCVGMALLGGN 498
+ + + T E+++TK T + + + + G L
Sbjct: 382 SMEFKEFTSEVFVTKKIPTKYNSNVFDSFVERTLMKVSDGHLPTIKNIHEMFGAVLYPTL 441
Query: 499 KAQRFIHIRG-VGGSGKSTLMNLIKYAFGN-QYVINAEASDIMQNRPPEAGKANPSLIRL 556
+ ++ G +GKST++ +I+ F + + + + +N + +
Sbjct: 442 LVPKMFYLYGRSAHNGKSTVLYMIQKTFNSGENISAISPQKLAENAFAGSS--------I 493
Query: 557 MGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV 616
G I+ + + ++ +K + G + G + N +
Sbjct: 494 YGKLANIVDDQPDEVIRDSGTLKTIITGGYVDIEYK-GKGSQTVQMNTVCITASNHYPNF 552
Query: 617 RNPDDAWWRRYIVIPFDKPIANRDASFAQ-----KLETKYTLE-AKKWFLKGVKAYISKG 670
R + +R ++PFD N ++ +LET E K + +K +
Sbjct: 553 REHGNQINKRLHILPFDHNFMNDPDRISEMESMKQLETVSAREYVLKLAVDAIKEMKQRT 612
Query: 671 LD-VDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYD 729
+D + E +AK++ + D + + D +Y E+ + +
Sbjct: 613 VDILTYNEKAEEAKQKFMEYNDPLADFFFEY-DKQFFEEVRGTDALNAYDEWCKDN--HV 669
Query: 730 RKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPA 774
+ + + ++ K ++K+ K S + +KG K K A
Sbjct: 670 QYPLGQKQFKDSVCTK--YEMEWKDKMIKINGSWKTVKGFKTKSA 712
>gi|19552943|ref|NP_600945.1| ATPase [Corynebacterium glutamicum ATCC 13032]
gi|62390620|ref|YP_226022.1| prophage DNA primase [Corynebacterium glutamicum ATCC 13032]
gi|41325958|emb|CAF20121.1| PROPHAGE DNA PRIMASE [Corynebacterium glutamicum ATCC 13032]
Length = 591
Score = 123 bits (308), Expect = 1e-25, Method: Composition-based stats.
Identities = 46/355 (12%), Positives = 122/355 (34%), Gaps = 31/355 (8%)
Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ-----------EFLDL 472
+ ++GI + T Q ++E + + + +
Sbjct: 188 KQRDLIPVKNGIFNYSTKQLEPFSQEFVFLAKSAVNYNPNAQNPVITHPQDGSVWDVESW 247
Query: 473 VSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGV-GGSGKSTLMNLIKYAFGNQYVI 531
++ + EV++ +G + + G +GK TL+ L++ G +
Sbjct: 248 MNDLSDDPEVVNLLWEIIGAIVRPYVSWNKSAWFYSEAGNNGKGTLVELMRNILGAEAYT 307
Query: 532 NAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEIN-AAKIKQMTGGDCMTAR 590
+ + SD + E+ L ++ +++ E + + +A +K + D ++
Sbjct: 308 SIQLSDFSKEFHLES---------LTRAQAILVDENDVGAFLEKSANLKAIVTNDVISIN 358
Query: 591 LNYGNTYSESPASFTPFIV--PNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLE 648
+ S F F+V N V++ ++++RR + +PF+K + + +
Sbjct: 359 RKHKTMLSY---QFYGFMVQCINGFPKVKDQSESFFRRQLFVPFEKSFTGAERKYIKDDY 415
Query: 649 TKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLW 708
T ++ L + ++ P L +E ++ D +A+ ++ D
Sbjct: 416 MSRTD-VLEYVL--HRVLHMNYDNLSTPAAALAVLDEYKEFVDPVRAFWNEFSDQFVWDL 472
Query: 709 EESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSK 763
L + Y ++ +++ + R+ + G + +
Sbjct: 473 LPLQFLYEFYRKWFDRDSPSG-SVLGKRSFIQKITTIAVDSGQWEYPLTAQRPGG 526
>gi|21324508|dbj|BAB99132.1| Predicted ATPase [Corynebacterium glutamicum ATCC 13032]
Length = 550
Score = 122 bits (307), Expect = 2e-25, Method: Composition-based stats.
Identities = 46/355 (12%), Positives = 122/355 (34%), Gaps = 31/355 (8%)
Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ-----------EFLDL 472
+ ++GI + T Q ++E + + + +
Sbjct: 147 KQRDLIPVKNGIFNYSTKQLEPFSQEFVFLAKSAVNYNPNAQNPVITHPQDGSVWDVESW 206
Query: 473 VSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGV-GGSGKSTLMNLIKYAFGNQYVI 531
++ + EV++ +G + + G +GK TL+ L++ G +
Sbjct: 207 MNDLSDDPEVVNLLWEIIGAIVRPYVSWNKSAWFYSEAGNNGKGTLVELMRNILGAEAYT 266
Query: 532 NAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEIN-AAKIKQMTGGDCMTAR 590
+ + SD + E+ L ++ +++ E + + +A +K + D ++
Sbjct: 267 SIQLSDFSKEFHLES---------LTRAQAILVDENDVGAFLEKSANLKAIVTNDVISIN 317
Query: 591 LNYGNTYSESPASFTPFIV--PNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLE 648
+ S F F+V N V++ ++++RR + +PF+K + + +
Sbjct: 318 RKHKTMLSY---QFYGFMVQCINGFPKVKDQSESFFRRQLFVPFEKSFTGAERKYIKDDY 374
Query: 649 TKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLW 708
T ++ L + ++ P L +E ++ D +A+ ++ D
Sbjct: 375 MSRTD-VLEYVL--HRVLHMNYDNLSTPAAALAVLDEYKEFVDPVRAFWNEFSDQFVWDL 431
Query: 709 EESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSK 763
L + Y ++ +++ + R+ + G + +
Sbjct: 432 LPLQFLYEFYRKWFDRDSPSG-SVLGKRSFIQKITTIAVDSGQWEYPLTAQRPGG 485
>gi|291335467|gb|ADD95079.1| hypothetical protein [uncultured phage MedDCM-OCT-S04-C348]
Length = 391
Score = 122 bits (307), Expect = 2e-25, Method: Composition-based stats.
Identities = 51/379 (13%), Positives = 119/379 (31%), Gaps = 52/379 (13%)
Query: 445 KPTKELYITKSTGTPFVEGEPSQ---EFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQ 501
++ Y+ + + + ++L + + + L+G + Q
Sbjct: 2 PFQRDFYLIQLLPYDYNPNAECETIIKWLKFTQD--GNWGRVQVLRAWLRAVLMGASDIQ 59
Query: 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRI 561
+F+ I G G SGKST NL G++ + + +NR L ++
Sbjct: 60 KFVEIVGPGKSGKSTYANLCNALVGDENTTISTLEHLEKNR--------FETANLYKKKL 111
Query: 562 VIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF--TPFIVPNKHLFVRNP 619
++ ++ + + +K +TG D + Y + P F I N+ + +P
Sbjct: 112 LLFNDVERYGG-SVSILKALTGRDLLRNEHKYQAG-KQKPFKFDGLCMITANEPIQTTDP 169
Query: 620 DDAWWRRYIVIPFDKPI---ANRDASFAQK--------LETKYTLEAKKWFLKGVKAYIS 668
RR + IPF+ P A + W L +
Sbjct: 170 TSGLARRRLTIPFNNPFRGSAKEQKTLIDMDDQGNAFGEFAPLLPGLVNWLLDMSHDQMR 229
Query: 669 KGLDVDIPEVCL---KAKEEERQGTDTYQAWIDDCCDI-----------------GENLW 708
+ ++ + +++ ++ + W+ C +
Sbjct: 230 E-YLMETTKHVKFFADYTIDQQLKSNPVKDWMHHCLVFELNTSSQIGFKKFAPQGSSTHY 288
Query: 709 EESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKG 768
+++ Y+ Y E +N + +S L ++ K RI
Sbjct: 289 AKTNEW--LYASYCEFCMNSNNNIMSRSRFESLLMDIFNHQLHLNIYAKRNTKGLRIFN- 345
Query: 769 LKLKPAFESVDDNSNIIDF 787
+ ++ + + +++D
Sbjct: 346 VAIRTGSQRFESYPSLVDL 364
>gi|207270806|ref|YP_002261448.1| gp32 [Listeria phage P40]
gi|204308021|gb|ACI00392.1| gp32 [Listeria phage P40]
Length = 635
Score = 122 bits (307), Expect = 2e-25, Method: Composition-based stats.
Identities = 71/362 (19%), Positives = 136/362 (37%), Gaps = 47/362 (12%)
Query: 431 EQDGILD------------LETGQKVKPTKELYITKSTGTPFVEGE-PSQEFLDLVSGYF 477
++GILD +E G ++ T YI + P D ++
Sbjct: 293 FKNGILDPARGEASGIGSFIEGGDLLEFTP-YYI----DVNYYPDAEPVAMVDDYITNLT 347
Query: 478 -ESEEVMDYFTRCVGMALLGGNKAQ----RFIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532
E+ C+G L+ + + + G GG GK T++ +++ G++ V
Sbjct: 348 EGDEDYRKLLLECLGSTLITNPETKRALAKLFIFIGKGGEGKGTMLTILRRILGDESVSA 407
Query: 533 AEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM---TGGDCMTA 589
+ D+ + + L L G + + EN IN K+K + + D +
Sbjct: 408 SSIEDLTREQY---------LYSLTGKLANLCDDV-ENKPINDKKMKILKNISTCDRIEL 457
Query: 590 RLNYGNTYSESPASFT--PFIVPNKHLFVRNPDDAWWRRYIVIP-FDKPIANRDASFAQK 646
R ++ PA+ T + N L ++W RR + +P F++ +D F K
Sbjct: 458 RKMREQSF---PATLTCSLILTSNHLLKSFEKGESWKRRVVWLPMFNRGF-KKDPRFITK 513
Query: 647 LETKYTLEA-KKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE 705
+ T LE + ++G I G + E K EE + + + D I +
Sbjct: 514 VTTPKALEYWVRLMMEGYNRIIENG-QLTSSEKINKYNEEYERENNNVIEYC-DSITIDD 571
Query: 706 NLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRI 765
+ + ++ Y+ + EQE+ K +S + V + F +K ++I
Sbjct: 572 IVGLKPKAVYDKYTTWYEQEIGEKDKALSAKIVKETVSSV-FDVEVKPQRIHGTTVKAYS 630
Query: 766 IK 767
I+
Sbjct: 631 IR 632
>gi|67922846|ref|ZP_00516345.1| Poxvirus D5 protein [Crocosphaera watsonii WH 8501]
gi|67855339|gb|EAM50599.1| Poxvirus D5 protein [Crocosphaera watsonii WH 8501]
Length = 478
Score = 122 bits (306), Expect = 2e-25, Method: Composition-based stats.
Identities = 51/321 (15%), Positives = 107/321 (33%), Gaps = 41/321 (12%)
Query: 494 LLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL 553
+ G Q+++ + G GG+GKSTL+ L G + V N + K+N
Sbjct: 1 MTGRCDWQKYLELIGPGGTGKSTLIRLAIALVGFENVHNTTFKKL--------EKSNFET 52
Query: 554 IRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKH 613
+ R+V+I++ + + +K +TG D + + + N++
Sbjct: 53 ASIKDKRLVVITDAERYTG-DVSTLKALTGQDTLPYEKKRQQATGGFKPTCMVILAANEN 111
Query: 614 LFVRNPDDAWWRRYIVIPFDKPIAN---------RDASFAQKLETKYTLEAKKWF--LKG 662
+ + RR + + I+ D Y W L G
Sbjct: 112 IKTSDYTSGLERRRVTVKMKNKISGIKQKDLINISDEGLITGEFASYLPGLLNWVLGLDG 171
Query: 663 --VKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLW------EESHSL 714
+ I+ + I + E + AW++ + +S +
Sbjct: 172 DKARHLINNVNNRSI--KMTLERVETLIENNPIAAWLNANIVYDPSAQTHVGLAVKSADI 229
Query: 715 AK--------SYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRII 766
+ Y+ Y + K ++ + + L + + E ++ R I
Sbjct: 230 EEGYLRANELLYTNYCAYCDASNLKPVNMQRFSALLLDFCQNQLNLSDVFKDENRNGRYI 289
Query: 767 KGLKLKPAFESVDDNSNIIDF 787
+GL+++ E D + I+F
Sbjct: 290 QGLRIR---EVNDLDPRFIEF 307
>gi|317506243|ref|ZP_07964062.1| phage/plasmid primase [Segniliparus rugosus ATCC BAA-974]
gi|316255489|gb|EFV14740.1| phage/plasmid primase [Segniliparus rugosus ATCC BAA-974]
Length = 775
Score = 122 bits (306), Expect = 3e-25, Method: Composition-based stats.
Identities = 40/251 (15%), Positives = 80/251 (31%), Gaps = 16/251 (6%)
Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLV-SGYFESEEV 482
S + ++G+L+ TG+K+ + + + + E
Sbjct: 353 SDEPLINLKNGMLNWVTGEKLDHDPKYLSAYQFPVDYDPEATCPVYEAWLRESTLVGGED 412
Query: 483 MDYFTRCVGMALLGGN-KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQN 541
V L+ + + + G SGKSTLM L++ G D+
Sbjct: 413 QTLILESVLSQLIDFTAPPTKALFLTGPTKSGKSTLMELMEALVG---------GDLTSA 463
Query: 542 RPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESP 601
+ S+ L G R+ I ++ N A K++TG D + A +G +
Sbjct: 464 IEFHKMEDPFSVAELYGMRLNIDADMPANYVPEVATFKKLTGRDKINANRKFGRMFKFKN 523
Query: 602 ASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDA---SFAQKLETKYTLEAKKW 658
+ NK V A+ R + F + + L+ +
Sbjct: 524 FA-VLIFSANKMPAVGERSRAFLSRAVPASFPHSLEGSEKMNGKLPALLKAEL-PGVLNR 581
Query: 659 FLKGVKAYISK 669
+ ++ ++
Sbjct: 582 LIMALRERKAR 592
>gi|182419856|ref|ZP_02951096.1| hypothetical protein CBY_4020 [Clostridium butyricum 5521]
gi|237666893|ref|ZP_04526878.1| conserved hypothetical protein [Clostridium butyricum E4 str. BoNT
E BL5262]
gi|182376404|gb|EDT73986.1| hypothetical protein CBY_4020 [Clostridium butyricum 5521]
gi|237658092|gb|EEP55647.1| conserved hypothetical protein [Clostridium butyricum E4 str. BoNT
E BL5262]
Length = 831
Score = 121 bits (304), Expect = 4e-25, Method: Composition-based stats.
Identities = 85/469 (18%), Positives = 158/469 (33%), Gaps = 20/469 (4%)
Query: 313 KAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEE 372
K F + + Y + + N W ++ + + + E+ F
Sbjct: 360 KDAFFSWIGDNLKYILNCDDERRFIYWNEKAWIRKTEEESRLLYGKFIKKCEEQF----- 414
Query: 373 PEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQ 432
+ + SP + ++ SKAK + +I L
Sbjct: 415 KRNRARGKYSPEEASKVLNKVKSWRNTSKAKECLNLIGLDEDLTINIAEYKKKYHILISA 474
Query: 433 DG-ILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDL----VSGYFESEEVMDYFT 487
+G I+DL+ G KE + + V E + +F++ Y EE +++
Sbjct: 475 NGKIIDLKDGVIRDSVKEDMVLDTVPYNLVGKEEALDFMEKKILKTYSYVLGEERLNFLL 534
Query: 488 RCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAG 547
+ M L G N Q + G SGKS + NL + N ++
Sbjct: 535 DFLAMKLSGKN-YQLALINIGPSKSGKSMMKNLTTNLYPNLVAQIPYTYLTTSHKGNMGA 593
Query: 548 KANPSLIRLMGSRIVIISETNEN-DEINAAKIKQMTGGDCMTARLNYGNTYSESPASFT- 605
+ + ++ L I + SE +N I + K + AR G + +
Sbjct: 594 ERDDIIVNLDKKLIALSSEVEKNNSPIAIGRFKNLLSNSITDARAAGGKMQNGIDLTHLD 653
Query: 606 PFIVPNKHLFVRNPDDAWWRRYIVIPFDK--PIANRDASFAQKLETKYTLEAKKWFLKGV 663
I N+ DDA R + I + P+ +R +F ++ + +F+
Sbjct: 654 MIIDTNEMPSFSGYDDAIENRLVFINWQNSIPVEDRIDNFNGEVIVPNMDKIWSYFI--Y 711
Query: 664 KAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYRE 723
+A K + +PEV K E + D + + + E + E +L + E
Sbjct: 712 RAIELKDKKIVVPEVIKKDSAERKGELDKFTMNVVTKLEYIEGEFIELVTLINELEIF-E 770
Query: 724 QELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLK 772
+ +++T + KG G K + K IKG+ LK
Sbjct: 771 LCPELKQSDKLHKSITDRI--KGVPGFEKVIQYRKGKYKVNGIKGIALK 817
>gi|257076858|ref|ZP_05571219.1| virulence-associated protein E [Ferroplasma acidarmanus fer1]
Length = 980
Score = 120 bits (302), Expect = 8e-25, Method: Composition-based stats.
Identities = 113/862 (13%), Positives = 244/862 (28%), Gaps = 124/862 (14%)
Query: 9 QAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDK--LPACGFGFVCGVGEQPLY 66
AK+ G + P + G K P + +++ K + P G G +
Sbjct: 13 AAKKYTKAGLPIFPTKPGSKEPDTVHGFKDATNDFNKFMQMHRPGDGIAMPTGASTYIII 72
Query: 67 AFDIDSKDEKTANTFKDTFEILHGTPIVRIG----------------------------- 97
D A ++ I ++RIG
Sbjct: 73 -------DPDVAKD-ENKKPIKKDGKVIRIGLDNLCKQFNLLGLEDSKLQTLVTETQSGG 124
Query: 98 -----QKPKILIPFRMNKEGIKKKKTTES-TQGHLDILGCGQYFVAYNIHPKTKKEYTWT 151
+ PK K +KK + E+ +DI G Y V K K Y +
Sbjct: 125 DHFWFRNPKG-------KPPLKKMQGNENNGIDKVDIQAEGAYVVLPPTEGKFGK-YKFI 176
Query: 152 TPPHRFKVEDTPL-----------LSEEDVEYL------------------FKFFQEITV 182
T ++ + PL SE D + + I
Sbjct: 177 TDVPFDEIPEMPLEFYNFFAGTEKKSENDADLIEYGGEYHPSNFKFDNEKTPLLISTIAD 236
Query: 183 PLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHD--EWIPVVMAVHHET 240
+ I T + N E L+ + ++ +WIP+V + +
Sbjct: 237 ITKRSNTGIGAEMTMYITGTLAFHNFEEPHALAVLKKVANINGYEKTDWIPIVKDTYKKF 296
Query: 241 RGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPK 300
K + W+ +D EI + L
Sbjct: 297 GTKDKNGNQHKIRGLPWLKKLLAEHKEFWNNYD--EIIKNLEILFPENLYDIAERMLNLA 354
Query: 301 GLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLV 360
+ ++ + + K + T D + Y L +A I
Sbjct: 355 RVGPAKVVSIILETEHVVTKSDN---TTDLEEIYLYHDGFYARGEEELKIESARIYTDAW 411
Query: 361 SMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEEN-SKAKSTAQSLEAGSIFSITS 419
+ ++ + D + + + ++ +E ++++ +
Sbjct: 412 NKALELANKLAPKTDELSPDTTKAIFEIRESMKKVIERGPTRSQINETLAQLRLATYTNP 471
Query: 420 DLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGE-------PSQEFLDL 472
D + S + +G L+ +T + +L + S +F
Sbjct: 472 DKFNPDSH-IPFLNGYLNTKTWKLEPHNPDLIYLWRIEANLNADKLDVVRLQDSPKFSKF 530
Query: 473 VSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532
++ FE + + + G + Q + + G GK +L+ ++K Y
Sbjct: 531 INETFEDRD-IPLILQYFGYTMYPDFPRQMVLFMTGRERVGKGSLVRILKKMNPYGYGSI 589
Query: 533 AEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN----ENDEINAAKIKQMTGGDCMT 588
+ IM + + G +++ +E I+ I ++ GGD +
Sbjct: 590 SFEKLIM-------NDNRFAFQGIEGKNLLVDTEIMRYHRRGQTIDYRNINKLFGGDVID 642
Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF-DKPIA--NRDASFAQ 645
+ + N + D+ + R I++ D I R A+
Sbjct: 643 LEKKGVTPTDYI-SKAKGIFLGN-LPLPKVTDEPFLARVILVKTKDHKIEQGERIANIED 700
Query: 646 KLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE 705
+ ++ + + + + + E +D + + DD D
Sbjct: 701 VILSEERDTIATLLVHHLMELSANNWNFTNEMTTDETVELWNLLSDIVEFYTDDEIDDVP 760
Query: 706 NLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSK-R 764
+ +++ S+ + + + ++ +T T K F +++I E K +
Sbjct: 761 EMEIPVNTVYDSFKRWSKAKG---IPLMAQQTFT-----KYFGKNYIKKRIRGENKERIY 812
Query: 765 IIKGLKLKPAFESVDDNSNIID 786
+ G +++N D
Sbjct: 813 VFTGCSFHKGNGEIENNIKDTD 834
>gi|90962177|ref|YP_536093.1| DNA primase [Lactobacillus phage Sal4]
gi|90821371|gb|ABE00010.1| DNA primase [Lactobacillus phage Sal4]
gi|300214851|gb|ADJ79267.1| DNA primase [Lactobacillus salivarius CECT 5713]
Length = 516
Score = 120 bits (302), Expect = 8e-25, Method: Composition-based stats.
Identities = 67/420 (15%), Positives = 140/420 (33%), Gaps = 34/420 (8%)
Query: 345 SLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKS 404
D + ++ ++ KE F+ + + N + VE ++ K
Sbjct: 62 RTIADILKRYVIFAVIGKKEKDFEKANLAYYDLDAGIYKHNSTNIEKLIIAVERSTSIKQ 121
Query: 405 TAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGE 464
+++E + + +S + +G+ + T + T T +
Sbjct: 122 RRETMEYLRLDAPQKHPTES-RNLIIVGNGVFNKNTKKLEPYNPRYIFTSKISTNYNPQA 180
Query: 465 PSQEFLDL-VSGYFES-----EEVMDYFTRCVGMALLGGNKAQRFIHIR--GVGGSGKST 516
F +S +F+ E + + A+ I + G G +GKST
Sbjct: 181 QEPNFKGWSLSKWFKDIAENDNEKEILLWQSLACAINPNLTPDVAIFLVDNGQGRTGKST 240
Query: 517 LMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAA 576
L++ G + + ++ L G +++I + N ND +
Sbjct: 241 FERLLENLVGIDNHAPLKLKEFEED---------FKLANAQGVKLIIGDDNNPNDYNKTS 291
Query: 577 -KIKQMTGGDCMTARLNYGNTYSESPASFTPFIV--PNKHLFVRNPDDAWWRRYIVIPFD 633
K++ G+ + +S F FIV N ++ DA RR +I F+
Sbjct: 292 ENFKRVATGETILVNPKRLPPFS---TQFNCFIVQSMNGLPRFKDDSDALLRRIKIIKFN 348
Query: 634 KPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDI-PEVCLKAKEEERQGTDT 692
++ A+ K + +W L I D I E + +E + D
Sbjct: 349 HQYNDKTANKDIKEKYIKDKRLLEWIL---SKVIVMDFDFMIDTEESRQEIKELKIANDP 405
Query: 693 YQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLN----LKQKGFI 748
++++ + ++ L K + + E N +++ T T L+ KG+
Sbjct: 406 VAYYVNEHINDLKSQRLPIVFLFKHFQATSDYENN--PQKMKQSTFTRRLRPLLEAKGYT 463
>gi|326692265|ref|ZP_08229270.1| poxvirus D5 protein [Leuconostoc argentinum KCTC 3773]
Length = 475
Score = 117 bits (294), Expect = 5e-24, Method: Composition-based stats.
Identities = 58/423 (13%), Positives = 132/423 (31%), Gaps = 23/423 (5%)
Query: 369 LSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRF 428
+S E + +R N + + +++ + S + D +
Sbjct: 62 ISWENLTEKSARAYIEREALENLKRYNAYNVKRMQGVSKTTLIQT-ISEHNPFEDQRTDI 120
Query: 429 LGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTR 488
+ ++G ++ETG + Y+ + + S F + +
Sbjct: 121 IAFKNGAYEIETGNITPNQQLHYLVNGHDIEINKDGQAPNIEAWGSYLFGNS--WQFIKE 178
Query: 489 CVGMALLG--GNKAQRFIHIRGVGGSGKSTLMNLIKY-AFGNQYVINAEASDIMQNRPPE 545
+G A + I + +GG+GKS + I + G + ++ + I +
Sbjct: 179 LLGYAFIPEYKTFNTIAIIVDEMGGTGKSYFFDSIVFPLLGTKNIVAKDMDTIAGS---N 235
Query: 546 AGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFT 605
A LI L I + + ++ ++GGD + + S
Sbjct: 236 GKSARFGLIGLFEKLSNIHLDLPDTRIEVPDTLRSLSGGDRIDVEAKNADALS-LKFYAL 294
Query: 606 PFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDAS--------FAQKLETKYTLEAKK 657
N+ + + A +R ++P P A + +K K
Sbjct: 295 LLFGANQTPNI-AVNVALSQRIKIVPVTAPRARERPQEQAKRALLWDEKQAIKELGAFAY 353
Query: 658 WFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKS 717
L + +G + A E + D ++ D +NL+ S++++
Sbjct: 354 SVLTAYQQAEQRG-KFSTSDEIETATREWLERQDLVTMFLKDVTREDDNLYSGGVSISQT 412
Query: 718 YSEYREQELNYDRK-RISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIK--GLKLKPA 774
+ ++ + ++ + ++Q G+ R + + GL L P
Sbjct: 413 WDLFQLWLQDNGIHSKLQRKQFNGRMEQLGYKKIKTRSHQTGKTTEYPVWSWDGLDLDPY 472
Query: 775 FES 777
F
Sbjct: 473 FNE 475
>gi|21910875|ref|NP_665143.1| putative DNA primase - phage associated [Streptococcus pyogenes
MGAS315]
gi|28876421|ref|NP_795620.1| putative DNA primase [Streptococcus pyogenes phage 315.5]
gi|21905081|gb|AAM79946.1| putative DNA primase - phage-associated [Streptococcus pyogenes
MGAS315]
Length = 292
Score = 117 bits (294), Expect = 7e-24, Method: Composition-based stats.
Identities = 43/244 (17%), Positives = 89/244 (36%), Gaps = 19/244 (7%)
Query: 493 ALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS 552
+L G ++ I G G GK T +I G + V + + +
Sbjct: 4 SLNGNYSYRKSIWFVGDGNDGKGTFQQMISNLVGFKNVAPLKLNQFSE---------RFG 54
Query: 553 LIRLMGSRIVIISETNENDEINAA-KIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPN 611
L + G ++I + ++ + + G+ ++ N Y + T N
Sbjct: 55 LAIIEGKTVIIGDDVQAGIYVDESSNFNSVVTGEPVSIEKKGENPY-MAIFKKTVIQSTN 113
Query: 612 KHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGL 671
+N + +RR I+IPF K ++ + ++A K + E ++ L + S L
Sbjct: 114 GMPVFKNKSNGTYRRIIIIPFKKTFSSAEDNWAIKDDYINRKEVLEYVL-----WKSINL 168
Query: 672 DVD---IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNY 728
D D P+V E ++ +T ++++ + E+ L Y + +
Sbjct: 169 DFDKFYEPKVTQDRMREFKEENNTILKFLNEYLEDVESTRLPVRFLWDVYQSWCTENGVT 228
Query: 729 DRKR 732
K+
Sbjct: 229 KPKK 232
>gi|254361629|ref|ZP_04977767.1| bacteriophage protein [Mannheimia haemolytica PHL213]
gi|153093147|gb|EDN74163.1| bacteriophage protein [Mannheimia haemolytica PHL213]
Length = 622
Score = 117 bits (292), Expect = 1e-23, Method: Composition-based stats.
Identities = 67/444 (15%), Positives = 137/444 (30%), Gaps = 73/444 (16%)
Query: 369 LSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSI------TSDLL 422
+ E D + + + Y R + ++ T Q +E I + L
Sbjct: 213 VETEETDLTNGTGTKQAKGFLAYPRTTANDKTRPFGTLQKMEVQPATVIGWNSKGQPETL 272
Query: 423 DSSS-RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEG-EPSQEFLDLVSGYFES- 479
+ Q + ++ ++T + E + F ++ +
Sbjct: 273 TPYPPYSVNVQRTV-----------NRQNWLTAYIPHSYDENVAETPHFDQWLNFVSDGK 321
Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539
++ + L Q F + G GGSGKS + G + +A +
Sbjct: 322 QDKAKNILAALYAILTNRYNWQVFFQVTGKGGSGKSVFAGIATLLAGEKNTASARLENFD 381
Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599
R + L +++I SE + + +K +TGGD + + ++
Sbjct: 382 DERK---------IAGLEDKKLIICSEQTKYAG-DGGGLKAITGGDMVRVDPKNKHPFNA 431
Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKK 657
A+ IV N + RR + F+K RD F K+ + +
Sbjct: 432 RIAAM-IMIVNNDPCKWTERNGGIDRRIVNFRFNKRPPENERDPYFMDKITLEIG-GIIR 489
Query: 658 WFLKGVKAYISKGLDVDIPEVCLKAKEEERQ---------GTDTYQAWID--------DC 700
L P +A EE+++ +D + + D
Sbjct: 490 KVLD----------TFPDPLEAKRALEEQKESLEALEIKKQSDPLTDFFEYLYTTENTDG 539
Query: 701 CDIGE----NLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKI 756
IG + L +Y + + + + T + ++Q G K +
Sbjct: 540 LYIGTGNTLGHDKIRTHLYPAYLAFVKAKNVL---ELGLNTFVVGIEQAVKQHGNKHDFT 596
Query: 757 EKEWKSKRIIKGLKLKPAFESVDD 780
+++ KG + F++ DD
Sbjct: 597 KRKTN-----KGQRTNVHFKNFDD 615
>gi|306834495|ref|ZP_07467608.1| virulence-associated protein E [Streptococcus bovis ATCC 700338]
gi|304423297|gb|EFM26450.1| virulence-associated protein E [Streptococcus bovis ATCC 700338]
Length = 545
Score = 116 bits (291), Expect = 1e-23, Method: Composition-based stats.
Identities = 48/338 (14%), Positives = 125/338 (36%), Gaps = 26/338 (7%)
Query: 440 TGQKVKPTKELYIT---KSTGTPFVEGEPSQEFL--DLVSGYF-ESEEVMDYFTRCVGMA 493
TG+ ++ +T K+ P+ + + D + F +E+ + + +
Sbjct: 184 TGKFEPFNPKIIVTRKIKTAYNPYAKEPTINGWKVTDWLKELFDGDKELYQLAIQIIKAS 243
Query: 494 LLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL 553
+ G + + F + G GG+GK T L+ G + V + + + + ++R +
Sbjct: 244 ITGQSLEKIFW-LYGEGGTGKGTFQQLLINLVGLENVASLKITALNKSRFTTSI------ 296
Query: 554 IRLMGSRIVIISETNENDEI-NAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612
L+G +VI + ++ I + + + + GD MT YS + T N
Sbjct: 297 --LLGKSLVIGDDVQKDAIIKDTSDMFSLASGDIMTIEDKGKKPYS-LRLNMTVVQSSNG 353
Query: 613 HLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLD 672
+ A RR+ ++ F ++ +K ++ +K + ++
Sbjct: 354 LPRMNGDVSAIDRRFRILVFSSKFKDKPNPAIKKDYINRKK-VLEYLVKLAIETPLEDIN 412
Query: 673 VDIPEVCLKAKEEERQGTDTYQAWIDDCCDIG-ENLWEESHSLAKSYSEYREQELNYDRK 731
P+ E ++ + +++ + + + + + +Y++ Y R+
Sbjct: 413 ---PKQSQTLLGEHQKDINPVLDFVEKTFREDLASEFIPNDFIWYCWKQYQD----YFRQ 465
Query: 732 RISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGL 769
S + L+ + K ++ + + +++ G
Sbjct: 466 PSSKSSNGLHREIKQYLPTFFKAGVRTIPAGRQLHLGF 503
>gi|315640374|ref|ZP_07895489.1| DNA primase [Enterococcus italicus DSM 15952]
gi|315483879|gb|EFU74360.1| DNA primase [Enterococcus italicus DSM 15952]
Length = 512
Score = 116 bits (290), Expect = 2e-23, Method: Composition-based stats.
Identities = 53/349 (15%), Positives = 107/349 (30%), Gaps = 31/349 (8%)
Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ--------EFLDLVSG 475
+ + +GI + T + + E T +VE E++ +S
Sbjct: 137 NDKNLVVVNNGIFNRSTKRLEPFSSEYVFVNKVATNYVENAKEPHFKDWNFSEWVKELSD 196
Query: 476 YFESEEVMDYFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
S+E + + +A+ + G +GKST L+ G + +
Sbjct: 197 GNPSKETL--LWQMFSVAVNANYISEVAVFFLSEQGRTGKSTFQQLMVNLVGRHNTASLK 254
Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAA-KIKQMTGGDCMTARLNY 593
+ +++ L G +VI + N D + K + GD +
Sbjct: 255 IKEF---------ESDFKLASAYGRSLVIGDDNNPKDFNETSENFKSVVTGDSVLLNPKG 305
Query: 594 GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTL 653
+S F + N ++ D RR V+ F+ + K + Y
Sbjct: 306 KEPFSTKLTPFVIQSM-NGLPRFKDITDGLQRRLRVVLFNHSYKGDKNNRLIKEKYIYDS 364
Query: 654 EAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHS 713
+ ++ L V + ++ +A E ++ +D E+
Sbjct: 365 QLLEYILSKVINMEFEEVEDTE--ESRQAIHELVLENSAVLSFFEDKFLELESERLPVKF 422
Query: 714 LAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKS 762
L K + + E E + RT T F ++R +
Sbjct: 423 LFKYFQAWCEHENQ--PTNMRQRTFTKE-----FRSIVERNGWTYHRNN 464
>gi|21910493|ref|NP_664761.1| putative DNA primase - phage associated [Streptococcus pyogenes
MGAS315]
gi|28876241|ref|NP_795450.1| putative DNA primase [Streptococcus pyogenes phage 315.2]
gi|21904692|gb|AAM79564.1| putative DNA primase - phage-associated [Streptococcus pyogenes
MGAS315]
Length = 290
Score = 116 bits (290), Expect = 2e-23, Method: Composition-based stats.
Identities = 45/255 (17%), Positives = 93/255 (36%), Gaps = 22/255 (8%)
Query: 493 ALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS 552
+L G ++ I G G GK T +I G + V + + +
Sbjct: 4 SLNGNYSYRKSIWFVGDGNDGKGTFQQMISNLVGFKNVAPLKLNQFSE---------RFG 54
Query: 553 LIRLMGSRIVIISETNENDEINAA-KIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPN 611
L + G ++I + ++ + + G+ ++ N Y + T N
Sbjct: 55 LAIIEGKTVIIGDDVQAGIYVDESSNFNSVVTGEPVSIEKKGENPY-MAIFKKTVIQSTN 113
Query: 612 KHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGL 671
+N + +RR I+IPF K ++ + ++A K + E ++ L + + L
Sbjct: 114 GMPSFKNKSNGTYRRIIIIPFQKTFSSTEDNWAIKDDYINRKEVLEYVL-----WKAINL 168
Query: 672 DVD---IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNY 728
D D P+ + ++ ++T A+IDD + + + L Y E+ + +
Sbjct: 169 DFDRFSEPKATQERMHAFKRDSNTILAFIDDWFERFTSTVLPTRFLWWLYKEWCKDNGH- 227
Query: 729 DRKRISTRTVTLNLK 743
+ T L
Sbjct: 228 --TPLKQSTFENELS 240
>gi|288906322|ref|YP_003431544.1| phage associated protein [Streptococcus gallolyticus UCN34]
gi|325979336|ref|YP_004289052.1| virulence-associated protein E [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
gi|288733048|emb|CBI14629.1| putative phage associated protein [Streptococcus gallolyticus
UCN34]
gi|325179264|emb|CBZ49308.1| virulence-associated protein E [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
Length = 542
Score = 115 bits (289), Expect = 2e-23, Method: Composition-based stats.
Identities = 45/293 (15%), Positives = 108/293 (36%), Gaps = 22/293 (7%)
Query: 440 TGQKVKPTKELYIT---KSTGTPFVEGEPSQEFL--DLVSGYF-ESEEVMDYFTRCVGMA 493
TG+ ++ +T K+ P+ + + D + F EE+ + +
Sbjct: 181 TGKFEPFNPQIIVTRKIKTAYNPYAKEPTINGWKVTDWLKELFDGDEELYKLAIQIFKAS 240
Query: 494 LLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL 553
+ G + + F + G GG+GK T L+ G + V + + +D+ ++R +
Sbjct: 241 VTGQSLEKIFW-LYGEGGTGKGTFQQLLINLVGLENVASLKITDLNKSRFTTSI------ 293
Query: 554 IRLMGSRIVIISETNENDEI-NAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612
L+G +VI + ++ I + + + + GD MT YS + T N
Sbjct: 294 --LLGKSLVIGDDVQKDAIIKDTSDMFSLATGDIMTIEDKGKKPYS-LRLNMTVVQSSNG 350
Query: 613 HLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLD 672
+ A RR+ ++ F + +K E ++ +K + ++
Sbjct: 351 LPRMNGDVSAIDRRFRILTFSSKFKTKPNPIIKKDYINRK-EVLEYLVKLAIETPLEDIN 409
Query: 673 VDIPEVCLKAKEEERQGTDTYQAWIDDCCDIG-ENLWEESHSLAKSYSEYREQ 724
P+ E ++ + +++ + + + + + +Y++
Sbjct: 410 ---PKKSQILLGEHQKDINPVLDFVEKTFKEDLASEFIPNDFIWYCWKQYQDY 459
>gi|284794737|ref|YP_003412090.1| hypothetical protein PhlaMp11 [Phaeoceros laevis]
gi|254596057|gb|ACT75298.1| hypothetical protein PhlaMp11 [Phaeoceros laevis]
Length = 316
Score = 114 bits (286), Expect = 5e-23, Method: Composition-based stats.
Identities = 45/247 (18%), Positives = 90/247 (36%), Gaps = 17/247 (6%)
Query: 421 LLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE-S 479
LD + L ++G+L+ ET + + E ++T S G + P+ F + + + +
Sbjct: 38 KLDDTIYIL-FENGVLNPETKEFFSHSPEFFLTTSIGFNWDPSCPTTVFFKYLDDFTQGN 96
Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539
++ + + + NKAQ F+ + G GGSGK+ L +++ G + +
Sbjct: 97 KDYKLFIQAFLQSLVKKQNKAQIFLVVIGPGGSGKTILAHVMTALAGKERTGTTGLKRLE 156
Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599
+ + L+ +++ +E E A +K G D + A + N
Sbjct: 157 TDPFENST--------LINKHLILANEAEEY-HGTANNLKAFVGSDMLKASEKHKNDPKT 207
Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFA------QKLETKYTL 653
+ I+ N L + +P + RR +I R +
Sbjct: 208 AYYKGQVVIIGNNPLTINDPGGSVLRRVRLIKALNVCQERKDLLSWSAGGWNGDIVPELP 267
Query: 654 EAKKWFL 660
W L
Sbjct: 268 GIMAWAL 274
>gi|213028477|ref|ZP_03342924.1| bacteriophage P4 DNA primase [Salmonella enterica subsp. enterica
serovar Typhi str. 404ty]
Length = 389
Score = 114 bits (286), Expect = 5e-23, Method: Composition-based stats.
Identities = 39/191 (20%), Positives = 66/191 (34%), Gaps = 18/191 (9%)
Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
R +G ++G+LD TG K ++ F + F +
Sbjct: 209 RRLIGFRNGVLDTATGTFSPHHKSHWLRTLCDVDFTSPVEGETLETHAPHFWRWLDRAAG 268
Query: 479 S-EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
E D + M L Q F+ + G GGSGKS L + G +A
Sbjct: 269 GKPEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNATSATIET 328
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
+ R L+G ++ + + E + A +K +TGGD ++ Y + Y
Sbjct: 329 LESPRER---------AALIGFSLIRLPD-QEKWSGDGAGLKAITGGDAVSVDPKYKDAY 378
Query: 598 SESPASFTPFI 608
S + +
Sbjct: 379 STHIPAVILAV 389
>gi|40556020|ref|NP_955105.1| CNPV082 NTPase, DNA replication [Canarypox virus]
gi|40233845|gb|AAR83428.1| CNPV082 NTPase, DNA replication [Canarypox virus]
Length = 794
Score = 112 bits (281), Expect = 2e-22, Method: Composition-based stats.
Identities = 53/292 (18%), Positives = 102/292 (34%), Gaps = 26/292 (8%)
Query: 362 MKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDL 421
+DV+ + E+ + K + + ++D + ++ + I
Sbjct: 353 WLKDVWRMCEDESNITKLILYMKDYISSDCTGLLLCPRNRKVIEHNLKD----MLIDPIE 408
Query: 422 LDSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVEGEPSQEFLDLVSGYFES 479
D L +G+ D++ + K T STG + + E ++ +S +
Sbjct: 409 TDIYPEKLQFTNGVYDIKDSVFYQGNDAKNFVCTVSTGYKYEDKEDINGVIEELSKILDD 468
Query: 480 --------EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVI 531
E + + + + L+G K Q G +GKST L+K +
Sbjct: 469 IQPKTKENSENRELYEQILSSCLMGTTK-QCIFFFYGETATGKSTTKKLLKSVM--HNMF 525
Query: 532 NAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE-----NDEINAAKIKQMTGGDC 586
I+ + + NP + + R V SE + + +I + IK++T C
Sbjct: 526 LETGQVILTEQMDKG--PNPFIANMHLKRAVFCSELPDFSCNTSKKIRSDNIKKLT-EPC 582
Query: 587 MTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN 638
+ R Y N + + T I N D+A RR ++ F N
Sbjct: 583 IVGRPCYSNKIN-NRNHATIIIDTNYKPVFDKVDNAIMRRIALVNFKTHFTN 633
>gi|330719217|ref|ZP_08313817.1| DNA primase [Leuconostoc fallax KCTC 3537]
Length = 475
Score = 112 bits (279), Expect = 3e-22, Method: Composition-based stats.
Identities = 51/369 (13%), Positives = 113/369 (30%), Gaps = 22/369 (5%)
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEV 482
D + + ++G ++ETG + Y+ + + + S F +
Sbjct: 115 DQRTDIIAFKNGTYEIETGNITPNQQSHYLVNGHDIDINKDGQANNIEEWGSYLFGNS-- 172
Query: 483 MDYFTRCVGMALLG--GNKAQRFIHIRGVGGSGKSTLMNLIKY-AFGNQYVINAEASDIM 539
+ +G A + I + +GG+GKS + I + G + ++ + I
Sbjct: 173 WQFIKELLGYAFIPEYKTFNTIAIIVDEMGGTGKSYFFDSIVFPLLGTKNIVAKDMDTIA 232
Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599
+ A LI L I + + ++ ++GGD + + S
Sbjct: 233 GS---NGKSARFGLIGLFEKLSNIHLDLPDTRIEVPDTLRSLSGGDKIDVEAKNADALS- 288
Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDAS--------FAQKLETKY 651
N+ + + A +R ++P P A + +K K
Sbjct: 289 LKFYALLLFGANQTPNI-AVNVALSQRIKIVPVTAPRARERPQEQAKRALLWDEKQAVKE 347
Query: 652 TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEES 711
L + +G + A E + D ++ D E +
Sbjct: 348 VGAFAYSVLTAYQQAKQRG-KFSTSDEIETATREWLERQDLVTMFLKDAVQDTEIDFGGG 406
Query: 712 HSLAKSYSEYREQELNYD-RKRISTRTVTLNLKQKGFI--GGIKREKIEKEWKSKRIIKG 768
++ +++ + +I + + ++Q G+ K + + G
Sbjct: 407 ATVVQTWELFELWLSENGINSKIQRKQFNVKMEQLGYTKVKTRKHQSATETDNPVWSWDG 466
Query: 769 LKLKPAFES 777
L L F
Sbjct: 467 LNLNKYFSD 475
>gi|88807526|ref|ZP_01123038.1| ATPase-like protein [Synechococcus sp. WH 7805]
gi|88788740|gb|EAR19895.1| ATPase-like protein [Synechococcus sp. WH 7805]
Length = 854
Score = 111 bits (277), Expect = 5e-22, Method: Composition-based stats.
Identities = 73/510 (14%), Positives = 153/510 (30%), Gaps = 68/510 (13%)
Query: 273 DFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKA 332
E +++ + + Y +A N + +T +
Sbjct: 299 RAERESARRERQGSGQPV-YSVDSATTLEACVIHNLNAVNGGQMVARNLQFWRWTEELHH 357
Query: 333 WYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYR 392
W ++ ++V W + +D+ E P+ D
Sbjct: 358 WERRSGHDVKHW-----------------LSKDLERYYEPPQSE------------RDIP 388
Query: 393 RQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYI 452
R K + L+ + LD S + +G+LD+ TG+ + E
Sbjct: 389 RFRFSTLDNVKRISGYLQ----IRLDDPRLDGSPHLIPFTNGVLDVTTGELLDHAPEHGC 444
Query: 453 TKSTGTPF---VEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGV 509
T + G+ F L+ + + + M + + + + + G
Sbjct: 445 TYCIQGNYCAPGTGQLGPAFHHLLQTSY-DKAHHQMLRAGMRMIVDPTMPSGKALVLEGA 503
Query: 510 GGSGKSTLMN-LIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN 568
GSGK L+N +I+ F + D + + ++G R++ +
Sbjct: 504 SGSGKGALVNGVIRRLFPTHAISALSRLDQLDGKEAIYQS-------VLGKRLITFGDL- 555
Query: 569 ENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDD--AWWRR 626
+ + ++ +TAR + + + + K + D W RR
Sbjct: 556 IGKQSKYSAFYELVDQSMITARRLFESEEVTVDFAGRFVLAMTKMPMFVDDDGNTGWMRR 615
Query: 627 YIVIPFDKPIANRDASFAQ-KLETKYTLE---AKKWFL-----KGVKAYISKGLDVDIPE 677
V+P RD S LE E W L + + + D E
Sbjct: 616 AFVVP--TIPGERDRSLYDGDLEADLATEVGAIASWALAMDRKEAIDILQGRSDD----E 669
Query: 678 VCLKAKEEERQGTDTYQAWIDDCCDIGENLWE-ESHSLAKSYSEYREQELNYDRKRISTR 736
+ + + TD+ +ID C + E + L +Y + +K ++
Sbjct: 670 EVQRVQAKAAASTDSLSEFIDHCLVPTDGTVEADQVDLIDAYRLFCHATG---KKALADA 726
Query: 737 TVTLNLKQKGFIGGIKREKIEKEWKSKRII 766
L++ R ++ + R +
Sbjct: 727 RFIGQLRKALPHLHQPRRQLSRSVARDRGV 756
>gi|211956363|ref|YP_002302432.1| NTPase [Deerpox virus W-1170-84]
gi|115503158|gb|ABI99076.1| NTPase [Deerpox virus W-1170-84]
Length = 786
Score = 110 bits (275), Expect = 9e-22, Method: Composition-based stats.
Identities = 57/305 (18%), Positives = 107/305 (35%), Gaps = 49/305 (16%)
Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKV--KPTKELYITKSTGTPFV-------EGEP 465
+ + D+ L ++GILD+ TG+ +K+ T STG +
Sbjct: 399 MLVDNIETDTYPCMLPFKNGILDISTGKFYTGPESKKFVCTVSTGFNLDVNIFSDENSKE 458
Query: 466 SQEFLDLVSGYFE----SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLI 521
+E +++ +++ + + R + L G K Q G +GKST L+
Sbjct: 459 MKELEKILNDIQPLTEENKKNRELYERTLASCLCGSTK-QCLTFFFGETATGKSTTKRLL 517
Query: 522 KYAFGNQY--VINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE-----NDEIN 574
+ A G+ + +D+M NP + + R V SE + + +I
Sbjct: 518 QSAIGDLFIETGQTILTDVMDK------GPNPFIANMHLKRSVFCSELPDFACSGSKKIR 571
Query: 575 AAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK 634
A IK++T C+ R + N + + + I N D+A RR +I F
Sbjct: 572 ADNIKKLT-EPCIVGRPCFSNRIN-NKNHASIIIDTNYKPIFDKVDNALMRRISLIRFRT 629
Query: 635 PIANR------------------DASFAQKLETK-YTLEAKKWFLKGVKAYISKGLD-VD 674
+ D + K++ Y + +K + Y +
Sbjct: 630 HFTQKNGFETARNNSAYSDIKQLDENLDIKIQKNYYRYQFLNLLVKWYQKYHIPTMRLFP 689
Query: 675 IPEVC 679
P+
Sbjct: 690 TPDAV 694
>gi|62637469|ref|YP_227467.1| NTPase (DNA replication) [Deerpox virus W-848-83]
gi|115503329|gb|ABI99247.1| NTPase [Deerpox virus W-848-83]
Length = 786
Score = 110 bits (275), Expect = 9e-22, Method: Composition-based stats.
Identities = 57/305 (18%), Positives = 107/305 (35%), Gaps = 49/305 (16%)
Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKV--KPTKELYITKSTGTPFV-------EGEP 465
+ + D+ L ++GILD+ TG+ +K+ T STG +
Sbjct: 399 MLVDNIETDTYPCMLPFKNGILDISTGKFYTGPESKKFVCTVSTGFNLDVNIFSDENSKE 458
Query: 466 SQEFLDLVSGYFE----SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLI 521
+E +++ +++ + + R + L G K Q G +GKST L+
Sbjct: 459 MKELEKILNDIQPLTEENKKNRELYERTLASCLCGSTK-QCLTFFFGETATGKSTTKRLL 517
Query: 522 KYAFGNQY--VINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE-----NDEIN 574
+ A G+ + +D+M NP + + R V SE + + +I
Sbjct: 518 QSAIGDLFIETGQTILTDVMDK------GPNPFIANMHLKRSVFCSELPDFACSGSKKIR 571
Query: 575 AAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK 634
A IK++T C+ R + N + + + I N D+A RR +I F
Sbjct: 572 ADNIKKLT-EPCIVGRPCFSNRIN-NKNHASIIIDTNYKPIFDKVDNALMRRISLIRFRT 629
Query: 635 PIANR------------------DASFAQKLETK-YTLEAKKWFLKGVKAYISKGLD-VD 674
+ D + K++ Y + +K + Y +
Sbjct: 630 HFTQKNGFETARNNSAYSDIKQLDENLDIKIQKNYYRYQFLNLLVKWYQKYHIPTMRLFP 689
Query: 675 IPEVC 679
P+
Sbjct: 690 TPDAV 694
>gi|455528|emb|CAA54618.1| unnamed protein product [Streptococcus phage SFi18]
Length = 277
Score = 110 bits (275), Expect = 1e-21, Method: Composition-based stats.
Identities = 53/283 (18%), Positives = 103/283 (36%), Gaps = 36/283 (12%)
Query: 419 SDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ---------EF 469
+ D L ++GI D + + + + T VE P
Sbjct: 16 PEYRDVRRFIL-VKNGIYDKRKKKLLSFDYKFINFSTIETELVENAPKPTINGWDVDSWL 74
Query: 470 LDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529
LDL+SG E+++ + + +L G + ++ I + G G GK T LI G +
Sbjct: 75 LDLMSG---DSELVELLWQVIAASLNGNHSYRKSIWLVGNGNDGKGTFQQLISNLVGLKN 131
Query: 530 VINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA-AKIKQMTGGDCMT 588
V + + + L + G ++I + ++ + + G+ ++
Sbjct: 132 VAPLKLNQFSE---------RFGLAIIEGKTVIIGDDVQAGIYVDESSNFNSVVTGEPVS 182
Query: 589 ARLNYGNTYSESPASFTPFIV--PNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQK 646
N Y A F ++ N +N + +RR ++IPF K D ++A K
Sbjct: 183 IEKKGENPY---LAQFKKTVIQSTNAMPVFKNKSNGTYRRIVIIPFKKTFGINDDNWAIK 239
Query: 647 LETKYTLEAKKWFLKGVKAYISKGLDVD---IPEVCLKAKEEE 686
+ E ++ L + + LD D P+ + +E
Sbjct: 240 DDYINRKEVLEYVL-----WKAINLDFDKFSEPKATQERMQEF 277
>gi|5420103|emb|CAB46558.1| putative DNA primase [Streptococcus thermophilus]
Length = 556
Score = 110 bits (274), Expect = 1e-21, Method: Composition-based stats.
Identities = 50/356 (14%), Positives = 122/356 (34%), Gaps = 32/356 (8%)
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE--------FLDLVS 474
D ++ + + ETG+ + + +T+ + +L +
Sbjct: 184 DKQENYVVVGGELYNNETGEFTQFDPRIIVTRKVRMGYNPDATEPIIDGWKPTVWLKGL- 242
Query: 475 GYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
+ + D + + + G F + G GG+GK T L++ G++ V +
Sbjct: 243 -FNGDRDSYDLAIQIIRATITGKTLENIFW-LYGEGGTGKGTFQTLLENLVGSENVAS-- 298
Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI-NAAKIKQMTGGDCMTARLNY 593
+ L+G +VI + ++ I + + + + GD +
Sbjct: 299 -------FKIDGASGKFDTSILIGKTVVIGDDIQKDVVIKDTSVVFSLATGDPIRIEDKG 351
Query: 594 GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTL 653
Y+ T N + A RR+ V+ F + D +
Sbjct: 352 KRPYTTRKRM-TVVQSSNGFPRMNADQKAINRRFRVLTFSELKGKADKRIKNDYVGR--K 408
Query: 654 EAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCC--DIGENLWEES 711
E ++F+K I P+ ++ +E + + ++D ++ + + +
Sbjct: 409 EVLEYFVKLA---IETPFRDVNPQKSIEFLDEAYKEMNPVADFVDRFFNDEVIKCNYVPN 465
Query: 712 HSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIK 767
+ + + Y E+ N + +++RT+ +K+ + R K K ++ +
Sbjct: 466 GYVFECFKAYCEKNQNRN-YFLNSRTLHKQIKK--ILPKTFRPKEVTIKKGQKFYE 518
>gi|50915163|ref|YP_061135.1| virulence-associated protein E [Streptococcus pyogenes MGAS10394]
gi|50904237|gb|AAT87952.1| Virulence-associated protein E [Streptococcus pyogenes MGAS10394]
Length = 562
Score = 110 bits (274), Expect = 1e-21, Method: Composition-based stats.
Identities = 61/338 (18%), Positives = 125/338 (36%), Gaps = 33/338 (9%)
Query: 436 LDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLD------LVSGYFESEEVMDYFTRC 489
+ +TGQ + T ++ +T+ T + + L+ + E+ + +
Sbjct: 193 YNYKTGQFEELTPDITVTRKIKTGYNKKAKEPTIKGWKPTAWLLELFDGDAELYNLAIQI 252
Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549
+ ++ G Q+ + G GG+GK T L+ G V + + +++ ++R +
Sbjct: 253 IKASITGQ-SLQKIFWLFGEGGTGKGTFQQLLINLVGMDNVASLKITELAKSRFTTSI-- 309
Query: 550 NPSLIRLMGSRIVIISETNENDEI-NAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFI 608
L+G IVI + ++ I + + I + GD MT YS + T
Sbjct: 310 ------LLGKSIVIGDDIQKDAVIKDTSDIFSLATGDIMTIEDKGKRPYS-IRLNMTVVQ 362
Query: 609 VPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDAS--FAQKLETKYTLEAKKWFLKGVKAY 666
N + A RR+ ++PF K + + K LE +K
Sbjct: 363 SSNGLPRMNGDKSAIDRRFRILPFTKVFKGKPNKAIRNDYINRKEVLEYL------LKLA 416
Query: 667 ISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIG-ENLWEESHSLAKSYSEYREQE 725
I + P+ ++ EE + + ++ + + + + + + E
Sbjct: 417 IETPITDINPKASIEILEEHHKEMNPVIDFVSKFFTDELTSEFIPNSFVYHVWKGFLEY- 475
Query: 726 LNYDRKRI-STRTVTLNLKQK---GFIGGIKREKIEKE 759
YD K+I S R + +K GF G K + ++
Sbjct: 476 --YDIKQIKSERGLHKEIKSNLPEGFEAGQKVIPVGRQ 511
>gi|15675884|ref|NP_270058.1| putative DNA primase [Streptococcus phage 370.4]
gi|13623119|gb|AAK34779.1| putative DNA primase - phage associated [Streptococcus phage 370.4]
Length = 562
Score = 110 bits (274), Expect = 1e-21, Method: Composition-based stats.
Identities = 61/338 (18%), Positives = 125/338 (36%), Gaps = 33/338 (9%)
Query: 436 LDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLD------LVSGYFESEEVMDYFTRC 489
+ +TGQ + T ++ +T+ T + + L+ + E+ + +
Sbjct: 193 YNYKTGQFEELTPDITVTRKIKTGYNKKAKEPTIKGWKPTAWLLELFDGDAELYNLAIQI 252
Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549
+ ++ G Q+ + G GG+GK T L+ G V + + +++ ++R +
Sbjct: 253 IKASITGQ-SLQKIFWLFGEGGTGKGTFQQLLINLVGMDNVASLKITELAKSRFTTSI-- 309
Query: 550 NPSLIRLMGSRIVIISETNENDEI-NAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFI 608
L+G IVI + ++ I + + I + GD MT YS + T
Sbjct: 310 ------LLGKSIVIGDDIQKDAVIKDTSDIFSLATGDIMTIEDKGKRPYS-IRLNMTVVQ 362
Query: 609 VPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDAS--FAQKLETKYTLEAKKWFLKGVKAY 666
N + A RR+ ++PF K + + K LE +K
Sbjct: 363 SSNGLPRMNGDKSAIDRRFRILPFTKVFKGKPNKAIRNDYINRKEVLEYL------LKLA 416
Query: 667 ISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIG-ENLWEESHSLAKSYSEYREQE 725
I + P+ ++ EE + + ++ + + + + + + E
Sbjct: 417 IETPITDINPKASIEILEEHHKEMNPVIDFVSKFFTDELTSEFIPNSFVYHVWKGFLEY- 475
Query: 726 LNYDRKRI-STRTVTLNLKQK---GFIGGIKREKIEKE 759
YD K+I S R + +K GF G K + ++
Sbjct: 476 --YDIKQIKSERGLHKEIKSNLPEGFEAGQKVIPVGRQ 511
>gi|326439149|ref|YP_004300279.1| putative superfamily 3 helicase [Mavirus]
gi|325484986|gb|ADZ16400.1| putative superfamily 3 helicase [Mavirus]
Length = 652
Score = 110 bits (274), Expect = 1e-21, Method: Composition-based stats.
Identities = 75/434 (17%), Positives = 134/434 (30%), Gaps = 33/434 (7%)
Query: 336 KDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQN 395
D IT + + + +K+P +
Sbjct: 53 YDPLTKSSDDTLTGAITKYLSQSFGKLTNTELQTLKLKLIEGNPNKTPDQLLK---AFKM 109
Query: 396 VEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKS 455
+ N+ K S+ + + IT + + Q+G +L + TK +I +
Sbjct: 110 ILNNTFIKRNISSIRSNLTYDIT---FNDDPDGIHFQNGRFNLLNNTLEERTKPCFINQY 166
Query: 456 TGTPF-VEGEPSQEFLDL-VSGYFESEEVMDYFTRCVGMALLGGN-KAQRFIHIRGVGGS 512
F E + +L+ + F +E +Y +G L G Q F+ G G
Sbjct: 167 IKRDFINPKEETINWLNSKIDQLFREKEAREYCLHMLGGMLSGRVCAKQEFLVNYGQGAR 226
Query: 513 GKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDE 572
GKSTL N I A + Y + + + N +R ++E +
Sbjct: 227 GKSTLYNFINAAVSDVYFQCLKNDTFSNHNNNKDKSLNSF---NNYTRYYFLNEID-TRS 282
Query: 573 INAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF 632
+N IK + G + Y + ++ T V N + + D RR +
Sbjct: 283 LNTDLIKSVVDG-KIQTNKLYQDGTFKTRTQGTLIFVSNHMINFK-TDSGIERRLKGYEY 340
Query: 633 DKPIANRDASF--------AQKL---ETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLK 681
+ +KL E +T E K + + + K IPE
Sbjct: 341 KNEFTDDKTRVNNDTVYLKDEKLFNAEENFTDEQKNAMFYILSSQLVKENVPTIPECFTS 400
Query: 682 AKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYD-RKRISTRTVTL 740
++ D + +I+ + + + L Y +K I V
Sbjct: 401 VTDDIVDANDEWAHFIEKYLIEEKGAKVHIDYIIE------NVRLEYPTKKNIGRSQVLS 454
Query: 741 NLKQKGFIGGIKRE 754
LK KGF K +
Sbjct: 455 ELKDKGFNYNRKLK 468
>gi|44971462|gb|AAS49812.1| RPXV099 [Rabbitpox virus]
Length = 785
Score = 110 bits (274), Expect = 1e-21, Method: Composition-based stats.
Identities = 55/242 (22%), Positives = 94/242 (38%), Gaps = 24/242 (9%)
Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVEG---EPSQEF 469
+ S D+ L ++G+LDL G K+ T STG F + E S E
Sbjct: 399 MLVDSVETDTYPDKLPFKNGVLDLVDGMFYSGDDAKKYMCTVSTGFKFDDTKFVEDSPEM 458
Query: 470 LDLVSGY-------FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIK 522
+L++ E+++ + + + + L G K G +GKST L+K
Sbjct: 459 EELMNIINDIQPLTDENKKNRELYEKTLSSCLCGATKG-CLTFFFGETATGKSTTKRLLK 517
Query: 523 YAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE-----NDEINAAK 577
A G+ +V I+ + + NP + + R V SE + + +I +
Sbjct: 518 SAIGDLFVET--GQTILTDVLDKG--PNPFIANMHLKRSVFCSELPDFACSGSKKIRSDN 573
Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637
IK++T C+ R + N + + T I N D+A RR V+ F +
Sbjct: 574 IKKLT-EPCVIGRPCFSNKIN-NRNHATIIIDTNYKPVFDRIDNALMRRIAVVRFRTHFS 631
Query: 638 NR 639
Sbjct: 632 QP 633
>gi|48477428|ref|YP_023134.1| virulence-associated protein E [Picrophilus torridus DSM 9790]
gi|48430076|gb|AAT42941.1| virulence-associated protein E [Picrophilus torridus DSM 9790]
Length = 1004
Score = 110 bits (274), Expect = 1e-21, Method: Composition-based stats.
Identities = 115/772 (14%), Positives = 233/772 (30%), Gaps = 82/772 (10%)
Query: 9 QAKQAIHNGFKLIPLRLGDKRPQ----RLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQP 64
+ I N + L K P W + + I G G
Sbjct: 5 YLDEFIKNKIPVFLLPPHRKDPIPGSRGFKDWTK---DEKIIRSWKTENMGIPTGDISG- 60
Query: 65 LYAFDIDSKDEKTAN-------------TFKDTFEILHGTPIVRIGQKPKILIPFRMNKE 111
++ +D D K + N K E + P I Q +
Sbjct: 61 IFVYDCDIKTGENGNIGINGLYGFLKILKLKTLDEYIQKYPDAFIVQTGSGYQFYFKIPV 120
Query: 112 GIK---KKKTTESTQGHLDILGCGQYFVAYN-IHPKTKKEYTWTTPPHRFKVEDTPLLSE 167
G+ + T + LD+ G G Y VA IHP EY ++ PL+ E
Sbjct: 121 GLDHNLRNTTNINGIKGLDVRGNGGYVVAPGSIHPN-GNEYK----IIHGSLDKIPLMPE 175
Query: 168 EDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHD 227
+ ++ P + P N+ + + TA +
Sbjct: 176 KLYNLWYEHDH----PDLLSDDFNEPRMPLNLNDENLNLDIKTTAMIFKKTPASEGN--- 228
Query: 228 EWIPVVMA---VHHETRGSSKGKEIARRWSKQGSTYDEE-NFNYKWDTFDFEEIGDTAKK 283
++MA +H S + +++ + + + ++ + NF D++ E+
Sbjct: 229 ---NLLMAHAGLHALRDVSIENEKLILKEAAALNHWNGKINFATVDDSYRRVELQKKGNI 285
Query: 284 RSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYI 343
+ S + G K ++ + N + + Y ++ D + +
Sbjct: 286 PADEKSKTFVKGYTTLKRII---MENRENYSENYDEIIKNLEYLFESHESPFYDVDGHNV 342
Query: 344 WSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAK 403
K +M+ + D FD + + + ++ +
Sbjct: 343 KHFNKGKSIKYVMSKYPFLYTDDFDNLYYFSVQDGWHNDI-----ENSLKNFIQTTDDSL 397
Query: 404 STAQSLEAGSIFS-IT-SDLLDSSS---RFLGEQDGILDLETGQKVKPTKELYITKSTGT 458
S E S IT + ++ + G+ ++E K Y +
Sbjct: 398 SEHNINEIISGIKHITYNKEFKNNPLPNNLIPLPSGLYNVENHALEKHN-NNYFYSNINR 456
Query: 459 PFVEG--EPSQEFLDLVSGYFESEEVMDY-FTRCVGMALLGGNKAQRFIHIRGVGGSGKS 515
F+ G E S + + E + +LL N Q I G GG+GK
Sbjct: 457 NFIPGVKEESLALSRFLDKVLTNPEKDKLTVYESIAWSLLNDNNIQGMIIFYGEGGNGKG 516
Query: 516 TLMN-LIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEIN 574
+ N +I G++ + S L L+ + ++ SE+ + N
Sbjct: 517 IIQNSVIANLLGHENAAMPDLS--------RIANYPFELQSLINKKALLFSESIKGVTYN 568
Query: 575 AAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYI-VIPFD 633
+K++TG D + S F+ N + ++ + WRR I ++ F
Sbjct: 569 WEILKRITGHDYENIPIKNKPAIQYQYKSAV-FLSTNNLIPPKDE-LSIWRRIINIVEFS 626
Query: 634 KPIANRDASFAQKLETK-----YTLEAKKWFLKGVK-AYISKGLDVDIPEVCLKAKEEER 687
+ + + K+ ++ + + + + +I G AKE+
Sbjct: 627 NYLNSLSSDEISKIVSELQDPNELDKLFSFIVDNIYPEFIKHGFKHRY--NINTAKEKYL 684
Query: 688 QGTDTYQAWIDDCCDIGENLWEESHSL-AKSYSEYREQELNYDRKRISTRTV 738
++ ++ E L + + L Y + + K +
Sbjct: 685 MKSNPAITYLKLKESRDEILTDPNDVLEYCKAHNYNQNNCYFIDKNGNETIF 736
>gi|81428210|ref|YP_395210.1| putative prophage lsa1 DNA primase [Lactobacillus sakei subsp.
sakei 23K]
gi|78609852|emb|CAI54899.1| Putative prophage lsa1 DNA primase [Lactobacillus sakei subsp.
sakei 23K]
Length = 497
Score = 109 bits (273), Expect = 2e-21, Method: Composition-based stats.
Identities = 49/353 (13%), Positives = 112/353 (31%), Gaps = 32/353 (9%)
Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ--------EFLDLVSGYFES 479
+ +G+ + T + T + T + +++ +S
Sbjct: 133 LIIVNNGVFNKNTKELEPFTPDHVFISKISTNYNPNAKEPTMQGWRFSKWVTELSDGQRD 192
Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIR--GVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
+E + + + A+ + + G G +GK TL ++ G Q + + +
Sbjct: 193 KETL--IWQMIASAVNANYSPETAFFLIDDGRGHTGKGTLQQILINLVGEQNCASLKLKE 250
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA-AKIKQMTGGDCMTARLNYGNT 596
+ L + G +VI + + N +++ A K +T GD ++ +
Sbjct: 251 FDE---------RFKLATIFGKALVIGDDNDPNSYVDSVANFKSVTTGDVVSVESKGVDA 301
Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAK 656
S + T N ++ + RR I + + K + Y +
Sbjct: 302 LS-IRMTPTIIQSMNGAPKFKDITGGFKRRLRAIKMLHQYDTSNVNRDIKDKYIYDNQVL 360
Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAK 716
++ L KA + + E D+ + + + L
Sbjct: 361 EYIL--FKALQIDLDTIIETTESNQTIYEIALDNDSILDFFESEIVELSSTRLPITYLFN 418
Query: 717 SYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGL 769
+ + + +N +I RT T L I +++ + K R ++G
Sbjct: 419 LFRCWCD--INNSPTKIKQRTFTTRL-----IPIMEKAGWQYNKKDLRPLEGF 464
>gi|322410912|gb|EFY01820.1| Putative DNA primase-phage associated protein [Streptococcus
dysgalactiae subsp. dysgalactiae ATCC 27957]
gi|322411248|gb|EFY02156.1| Putative DNA primase-phage associated protein [Streptococcus
dysgalactiae subsp. dysgalactiae ATCC 27957]
Length = 562
Score = 109 bits (272), Expect = 2e-21, Method: Composition-based stats.
Identities = 59/338 (17%), Positives = 125/338 (36%), Gaps = 33/338 (9%)
Query: 436 LDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLD------LVSGYFESEEVMDYFTRC 489
+ +TG+ + T ++ +T+ T + + L+ + E+ + +
Sbjct: 193 YNYKTGRFEELTPDITVTRKIKTNYNKKAKEPTIKGWKPTTWLLELFDGDTELYNLAIQI 252
Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549
+ ++ G Q+ + G GG+GK T L+ G V + + +++ ++R +
Sbjct: 253 IKASITGQ-SLQKIFWLFGEGGTGKGTFQQLLINLVGMDNVASLKITELAKSRFTTSI-- 309
Query: 550 NPSLIRLMGSRIVIISETNENDEI-NAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFI 608
L+G IVI + ++ I + + + + GD MT YS + T
Sbjct: 310 ------LLGKSIVIGDDIQKDAVIKDTSDMFSLATGDIMTIEDKGKRPYS-IRLNMTVVQ 362
Query: 609 VPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDAS--FAQKLETKYTLEAKKWFLKGVKAY 666
N + A RR+ ++PF K + + K LE +K
Sbjct: 363 SSNGLPRMNGDKSAIDRRFRILPFTKVFKGKPNKAIRNDYINRKEVLEYL------LKLA 416
Query: 667 ISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIG-ENLWEESHSLAKSYSEYREQE 725
I + P+ ++ EE + + ++ + + + + + + E
Sbjct: 417 IETPITDINPKTSIEILEEHHKEMNPVIDFVSKFFTDELTSEFIPNSFVYHVWKGFLEY- 475
Query: 726 LNYDRKRI-STRTVTLNLKQK---GFIGGIKREKIEKE 759
YD K+I S R + +K GF G K + ++
Sbjct: 476 --YDIKQIKSERGLHKEIKSNLPEGFEAGQKVIPVGRQ 511
>gi|56808601|ref|ZP_00366330.1| COG3378: Predicted ATPase [Streptococcus pyogenes M49 591]
gi|209558920|ref|YP_002285392.1| Putative DNA primase-phage associated [Streptococcus pyogenes
NZ131]
gi|209540121|gb|ACI60697.1| Putative DNA primase-phage associated [Streptococcus pyogenes
NZ131]
Length = 562
Score = 109 bits (272), Expect = 2e-21, Method: Composition-based stats.
Identities = 60/338 (17%), Positives = 125/338 (36%), Gaps = 33/338 (9%)
Query: 436 LDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLD------LVSGYFESEEVMDYFTRC 489
+ +TG+ + T ++ +T+ T + + L+ + E+ + +
Sbjct: 193 YNYKTGRFEELTPDITVTRKIKTSYNKKAKEPTIKGWKPTTWLLELFDGDTELYNLAIQI 252
Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549
+ ++ G Q+ + G GG+GK T L+ G V + + +++ ++R +
Sbjct: 253 IKASITGQ-SLQKIFWLFGEGGTGKGTFQQLLINLVGMDNVASLKITELAKSRFTTSI-- 309
Query: 550 NPSLIRLMGSRIVIISETNENDEI-NAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFI 608
L+G IVI + ++ I + + I + GD MT YS + T
Sbjct: 310 ------LLGKSIVIGDDIQKDAVIKDTSDIFSLATGDIMTIEDKGKRPYS-IRLNMTVVQ 362
Query: 609 VPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDAS--FAQKLETKYTLEAKKWFLKGVKAY 666
N + A RR+ ++PF K + + K LE +K
Sbjct: 363 SSNGLPRMNGDKSAIDRRFRILPFTKVFKGKPNKAIRNDYINRKEVLEYL------LKLA 416
Query: 667 ISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIG-ENLWEESHSLAKSYSEYREQE 725
I + P+ ++ EE + + ++ + + + + + + E
Sbjct: 417 IETPITDINPKTSIEILEEHHKEMNPVIDFVSKFFTDELTSEFIPNSFVYHVWKGFLEY- 475
Query: 726 LNYDRKRI-STRTVTLNLKQK---GFIGGIKREKIEKE 759
YD K+I S R + +K GF G K + ++
Sbjct: 476 --YDIKQIKSERGLHKEIKSNLPEGFEAGQKVIPVGRQ 511
>gi|326792799|ref|YP_004310620.1| Bifunctional DNA primase/polymerase [Clostridium lentocellum DSM
5427]
gi|326543563|gb|ADZ85422.1| Bifunctional DNA primase/polymerase [Clostridium lentocellum DSM
5427]
Length = 416
Score = 109 bits (271), Expect = 3e-21, Method: Composition-based stats.
Identities = 62/437 (14%), Positives = 117/437 (26%), Gaps = 71/437 (16%)
Query: 26 GDKRPQRLGKWEEQLLSSEK-----IDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANT 80
K P W+E +++ K P G G L D+D+K + +
Sbjct: 42 KGKHPI-FNGWQELATTNQDTITKWWSKYPDANIGIPTGERSGWLV-LDVDTK-YQGDES 98
Query: 81 FKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNI 140
+ + P S + LD G VA
Sbjct: 99 LELLQMLYEDLPPTVTALTGSGGRHLIFKYPKGVHIPNKVSFKQGLDTRSNGGLIVATPS 158
Query: 141 HPKTKKEYTWTT--PPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWT 198
+ Y+W P + + P + K + +T T
Sbjct: 159 LHVSGNTYSWLEGHSPFDSEPVEAP--------EWLLEVMCEGDQIQKREVVYQALETST 210
Query: 199 NNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGS 258
N +T+ + M S G +A
Sbjct: 211 ATVFEGSRNNHLTSLAGTLRRK------------GM--------SESGIIVAL----MAE 246
Query: 259 TYDEENFNYKWDTFDFEEIGDTAKKRST--FTSLFYHHGKLIPKGLLASRFSDAYNKAMF 316
E N + + I + K Y++ +D+ N F
Sbjct: 247 N--EANCEPPLEVEEVRTIARSIGKYEPNKANLKPYYNR------------TDSGNAERF 292
Query: 317 SIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDN 376
Y W+ N W + I + + + +++ +D+
Sbjct: 293 RDLYGKDIRYCHILDKWFIW---NGQYWEAD---SSGRITELAIKTVRTMLEEAQQIQDD 346
Query: 377 NKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGIL 436
+ + + E S+ K+ +IT+D LD + Q+GI+
Sbjct: 347 IARRELVKHALKS-------EGFSRIKAMISLASDLQELTITTDELDKDIWKINCQNGII 399
Query: 437 DLETGQKVKPTKELYIT 453
DL+TG+ + ++ + T
Sbjct: 400 DLKTGELLSHDRKYFYT 416
>gi|282890933|ref|ZP_06299447.1| hypothetical protein pah_c032o007 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|281499148|gb|EFB41453.1| hypothetical protein pah_c032o007 [Parachlamydia acanthamoebae str.
Hall's coccus]
Length = 159
Score = 109 bits (271), Expect = 3e-21, Method: Composition-based stats.
Identities = 26/128 (20%), Positives = 52/128 (40%), Gaps = 6/128 (4%)
Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQ--KVKPTKELYITKSTGTPFVEGEPSQEFLDLVS 474
+ D +R + +G L L+ G K Y T + + F +
Sbjct: 32 MAKHQFDIDTRAINCLNGELHLKEGTWHLQPHDKHNYRTTQIPIAYDPQATAPRFEQFLE 91
Query: 475 GYFESEEVMD----YFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530
F+ +E + +G +LL + ++F+ + G G +GKS L+++++Y G +V
Sbjct: 92 EIFQGDEDTEERKITVCELLGYSLLTSCEFEKFVILLGNGSNGKSVLLHVVEYLVGTSHV 151
Query: 531 INAEASDI 538
+ I
Sbjct: 152 SAVQPLPI 159
>gi|186686657|ref|YP_001869852.1| helicase superfamily 3 [Nostoc punctiforme PCC 73102]
gi|186469691|gb|ACC85487.1| Helicase superfamily 3 [Nostoc punctiforme PCC 73102]
Length = 1019
Score = 108 bits (270), Expect = 3e-21, Method: Composition-based stats.
Identities = 60/412 (14%), Positives = 127/412 (30%), Gaps = 58/412 (14%)
Query: 417 ITSDLLDSSSRFLGEQDGIL------DLETGQKVKPTKELYITKSTGTPFVEGEPSQEFL 470
I ++LL + + +GI+ + + T E Y + + +
Sbjct: 440 IEAELL--NPPGINCTNGIVRPVLIGNKVIPRLDPHTPEDYFIYEPLIEYNPNADTTDCD 497
Query: 471 DLVSGYFESEEVMDYFTRCVGMALLGGN------KAQRFIHIRGVGGSGKSTLMNLIKYA 524
L+ + R + ++ + + I G+G +GK L +
Sbjct: 498 RLLE--CLDRPQQEILLRNLAASIDLKTVRKLRGREVKAILAVGLGSNGKDALRECVSII 555
Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEIN-AAKIKQMTG 583
+G + + +D +L LM SR+ SE + I+ +K
Sbjct: 556 YGENGLTSVSLADF----QLYDEGRKFNLAPLMHSRVNWASENPQTSRIDKIQSLKLFVT 611
Query: 584 GDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA-NRDAS 642
G+ + + +P + F N+ ++ A R V+ F K N D +
Sbjct: 612 GNKLHCERKGKDHIEFTPEAIGIF-NLNETPSLQGVMKAIQDRIAVLEFKKTFEKNPDPN 670
Query: 643 FAQKL-------------ETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQG 689
+L TK L+ + I +G+D E A ++
Sbjct: 671 NPNELLADPRFAYDKEFIRTKVAPAFLNKMLQALNDLIEEGIDY---ECTTDAFYNLQKE 727
Query: 690 TDTYQAWID-DCCDIGENLWEESHSLAKSYSEYREQEL------NYDRKRISTRTVTLNL 742
+ +I+ + L Y Q + +R+ S + +
Sbjct: 728 NNHLFDFIEAANLCYVPGKELTAKELWVRLEHYYTQTGTLTIDSDNNRRTWSEQVRPSDK 787
Query: 743 KQKG-----------FIGGIKREKI-EKEWKSKRIIKGLKLKPAFESVDDNS 782
KG F +K + + ++ ++KG+ + + D +
Sbjct: 788 NVKGINQVIARIAQLFPKAVKGTRYCDIAKRNIPVLKGIGILEVTRTTLDET 839
>gi|23097625|ref|NP_691091.1| primase [Oceanobacillus iheyensis HTE831]
gi|22775848|dbj|BAC12126.1| primase [Oceanobacillus iheyensis HTE831]
Length = 619
Score = 108 bits (270), Expect = 3e-21, Method: Composition-based stats.
Identities = 52/337 (15%), Positives = 109/337 (32%), Gaps = 34/337 (10%)
Query: 424 SSSRFLGEQDGILDLETGQKVKPTKEL-YITKSTGTPFVEGEPSQ----------EFLDL 472
+GI D +T Q + + Y+TK + + +
Sbjct: 221 KERHLFAVNNGIYDQKTRQLMPFNPKYVYLTKI-PVEYKAHPINPVKTSPDGYQWDVESW 279
Query: 473 VSGYFESEE-VMDYFTRCVGMALLGGNKAQRFIHIRG-VGGSGKSTLMNLIKYAFGNQYV 530
+ +++ + + L + I G +GK T+ LIK G
Sbjct: 280 LREIMDNDAGSTTLMWQVIADCLQPNYSRHKSIWFYSEKGNNGKGTVGQLIKNLLGKGNY 339
Query: 531 INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK-IKQMTGGDCMTA 589
+ +D + L+ I E + + I++ K K GD +
Sbjct: 340 ASLSVADFNHEFLKSS---------LVNVAANIADENDVDIYIDSVKDYKASVTGDDINI 390
Query: 590 RLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLET 649
+ YG ++ N ++ ++++RR I++PF K N K +
Sbjct: 391 NIKYGQPLRIQFNGSNIQMM-NGLPKTKDKSESFYRRIILVPFLKSFTNNGERTYIKDDY 449
Query: 650 KYTLEAKKWFLKGVKAYISKGLD-VDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLW 708
E ++ L ++ D +P + + R+ ++ + ++ E +W
Sbjct: 450 INQQEVLEYVL---HKALNMDFDEFIVPARSAELLDCYREKNNSVMEFWNEL--KEEFVW 504
Query: 709 E--ESHSLAKSYSEYREQELNYDRKRISTRTVTLNLK 743
+ + L Y ++ E K + RT L
Sbjct: 505 DLLPTDFLYAIYEKWSEMNNPSG-KLMGKRTFKDTLS 540
>gi|186687026|ref|YP_001870415.1| hypothetical protein Npun_DF027 [Nostoc punctiforme PCC 73102]
gi|186469650|gb|ACC85447.1| conserved hypothetical protein [Nostoc punctiforme PCC 73102]
Length = 1002
Score = 108 bits (270), Expect = 3e-21, Method: Composition-based stats.
Identities = 55/355 (15%), Positives = 105/355 (29%), Gaps = 40/355 (11%)
Query: 411 AGSIFSITSDLLDSSSRFLGEQDGILDLE------TGQKVKPTKELYITKSTGTPFVEGE 464
A I +L+ + + +GI+ +E T + T E Y +
Sbjct: 425 AKMGTEIDPELI--NPPGVNCTNGIVKVEWEGRNFTVRLAPHTPEDYYIYEPLIEYNPNA 482
Query: 465 PSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGN------KAQRFIHIRGVGGSGKSTLM 518
L++ + + F R + +L + + + G+G +GK L
Sbjct: 483 DDTYCEQLLA--CLDKPQQEIFLRNIAASLDLQTVRKFRGREVKAMFAIGLGSNGKDALR 540
Query: 519 NLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEIN-AAK 577
+ +G + + D L L+ SR+ SE + I+
Sbjct: 541 ECVSTIYGKNGLTSVSLGDF----QSYDEGRKFGLAPLIYSRVNWASENPQTSRIDRLQS 596
Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637
+K GD + + S ++ N+ + A R ++ F K
Sbjct: 597 LKLFVTGDTLHCEHKGKDHIEFS-SNAIGIFNLNETPAFQGVIQAIKDRIAILEFKKTFV 655
Query: 638 NR-----------DASF---AQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAK 683
+ D F + TK LK + I G+D E A
Sbjct: 656 DNPSPNNLNEIKGDPRFRYDQDFIRTKLAPAFLNRILKALNNLIESGIDY---ECTTDAF 712
Query: 684 EEERQGTDTYQAWIDD-CCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRT 737
++ + +I+D E + +L + Q + RT
Sbjct: 713 RNLQRENNHLFDFIEDEKLGYVEGGEMSASALWMLLENWYIQNGTLTIDENNRRT 767
>gi|12085066|ref|NP_073468.1| 83R protein [Yaba-like disease virus]
gi|157939706|ref|YP_001497078.1| NTPase [Tanapox virus]
gi|12056242|emb|CAC21321.1| 83R protein [Yaba-like disease virus]
gi|146746422|gb|ABQ43558.1| NTPase [Tanapox virus]
gi|146746578|gb|ABQ43713.1| NTPase [Tanapox virus]
Length = 786
Score = 107 bits (266), Expect = 1e-20, Method: Composition-based stats.
Identities = 56/305 (18%), Positives = 106/305 (34%), Gaps = 49/305 (16%)
Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKP--TKELYITKSTGTPFV----------E 462
+ + D+ L ++G+LD+ +G+ +K+ T ST F E
Sbjct: 399 MLVDTVETDTYPHILPFKNGVLDITSGKFYHGEESKKFICTASTDFNFEMDKFLNDTSIE 458
Query: 463 GEPSQEFLDLVS-GYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLI 521
+ + +D + E+ + + + R + L G K Q G +GKST L+
Sbjct: 459 MKELECIIDDIQPKTCENLKNRELYERTLSSCLCGSTK-QCITFFFGETATGKSTTKRLL 517
Query: 522 KYAFGNQY--VINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE-----NDEIN 574
+ A G+ + +D+M NP + + R V SE + + +I
Sbjct: 518 QSAIGDLFIETGQTILTDLMDK------GPNPFISNMHLKRSVFCSELPDFACSGSKKIR 571
Query: 575 AAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK 634
A +K++T C+ R + N + + + I N D A RR ++ F
Sbjct: 572 ADNVKKLT-EPCIVGRSCFSNKIN-NRNHASIIIDTNYKPIFDRVDCALMRRVSLVKFRT 629
Query: 635 PIANR------------------DASFAQKLETK-YTLEAKKWFLKGVKAYISKGLD-VD 674
+ D + K++ K Y +K + Y +
Sbjct: 630 HFSQPSSAEAAKSNSAYDDVKPLDENLDMKIQKKYYRFAFLNMLVKWYQKYHVPTMRLFP 689
Query: 675 IPEVC 679
P+
Sbjct: 690 TPDAV 694
>gi|301134606|gb|ADK63720.1| m80R [Myxoma virus]
Length = 786
Score = 107 bits (266), Expect = 1e-20, Method: Composition-based stats.
Identities = 60/305 (19%), Positives = 102/305 (33%), Gaps = 49/305 (16%)
Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKV--KPTKELYITKSTGTPFVE----GEPSQE 468
+ D L ++G+LD+ G +K+ T STG S+E
Sbjct: 399 MLVDVTETDVHPCILPFRNGVLDISNGTFYTGHDSKDFICTVSTGFNLNMEKFLDNDSEE 458
Query: 469 FLDLVSGYF-------ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLI 521
+LVS E+++ + + R + L G K Q G +GKST L+
Sbjct: 459 MKELVSIINDIQPLTEENKQNRELYERTLASCLCGTTK-QCITFFFGETATGKSTTKKLL 517
Query: 522 KYAFGNQY--VINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE-----NDEIN 574
A G+ + +++M NP + + R V SE + + I
Sbjct: 518 HSAIGSLFIETGQTILTEVMDK------GPNPFIANMHLKRSVFCSELPDFACSTSKRIR 571
Query: 575 AAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK 634
A IK++T C+ R + N + + + I N D+A RR ++ F
Sbjct: 572 ADNIKKLT-EPCIVGRQCFSNRIN-NKNHASIIIDTNYKPVFDRVDNALMRRISLVRFRT 629
Query: 635 PIANR------------------DASFAQKLETK-YTLEAKKWFLKGVKAYISKGLD-VD 674
A D + K++ Y ++ + Y L
Sbjct: 630 HFAQTATNKEMLNKAAYDDVKPLDETLDMKIQKNYYRYAFLNLLVQWYQKYHVPHLKLFS 689
Query: 675 IPEVC 679
PE
Sbjct: 690 TPENV 694
>gi|9633716|ref|NP_051794.1| m80R [Myxoma virus]
gi|6523935|gb|AAF14968.1|AF170726_84 m80R [Myxoma virus]
gi|170664546|gb|ACB28703.1| m80R [Myxoma virus]
gi|170664719|gb|ACB28875.1| m80R [recombinant virus 6918VP60-T2]
Length = 786
Score = 107 bits (266), Expect = 1e-20, Method: Composition-based stats.
Identities = 60/305 (19%), Positives = 102/305 (33%), Gaps = 49/305 (16%)
Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKV--KPTKELYITKSTGTPFVE----GEPSQE 468
+ D L ++G+LD+ G +K+ T STG S+E
Sbjct: 399 MLVDVTETDVHPCILPFRNGVLDISNGTFYTGHDSKDFICTVSTGFNLNMEKFLDNDSEE 458
Query: 469 FLDLVSGYF-------ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLI 521
+LVS E+++ + + R + L G K Q G +GKST L+
Sbjct: 459 MKELVSIINDIQPLTEENKQNRELYERTLASCLCGTTK-QCITFFFGETATGKSTTKKLL 517
Query: 522 KYAFGNQY--VINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE-----NDEIN 574
A G+ + +++M NP + + R V SE + + I
Sbjct: 518 HSAIGSLFIETGQTILTEVMDK------GPNPFIANMHLKRSVFCSELPDFACSTSKRIR 571
Query: 575 AAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK 634
A IK++T C+ R + N + + + I N D+A RR ++ F
Sbjct: 572 ADNIKKLT-EPCIVGRQCFSNRIN-NKNHASIIIDTNYKPVFDRVDNALMRRISLVRFRT 629
Query: 635 PIANR------------------DASFAQKLETK-YTLEAKKWFLKGVKAYISKGLD-VD 674
A D + K++ Y ++ + Y L
Sbjct: 630 HFAQTATNKEMLNKAAYDDVKPLDETLDMKIQKNYYRYAFLNLLVQWYQKYHVPHLKLFS 689
Query: 675 IPEVC 679
PE
Sbjct: 690 TPENV 694
>gi|225194752|gb|ACN81884.1| DNA-dependent NTPase [Raccoonpox virus]
Length = 785
Score = 107 bits (266), Expect = 1e-20, Method: Composition-based stats.
Identities = 54/242 (22%), Positives = 93/242 (38%), Gaps = 24/242 (9%)
Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVEG---EPSQEF 469
+ S D+ L ++G+LDL G K+ T STG F + E S E
Sbjct: 399 MLVDSVETDTYPDKLPFKNGVLDLVDGMFYSGDDAKKYTCTISTGFKFDDKKFVEDSPEM 458
Query: 470 LDLVSGYFESEEV-------MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIK 522
+L++ + + + + + + + L G K G +GKST L+K
Sbjct: 459 EELLNIINDIQPLTEENKKNRELYEKTLSSCLCGATKG-CLTFFFGETATGKSTTKRLLK 517
Query: 523 YAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE-----NDEINAAK 577
A G+ +V I+ + + NP + + R V SE + + +I +
Sbjct: 518 SAIGDLFVET--GQTILTDVLDKG--PNPFIANMHLKRSVFCSELPDFACSGSKKIRSDN 573
Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637
IK++T C+ R + N + + T I N D+A RR V+ F +
Sbjct: 574 IKKLT-EPCVIGRPCFSNKIN-NRNHATIIIDTNYKPVFDRIDNALMRRIAVVRFRTHFS 631
Query: 638 NR 639
Sbjct: 632 QP 633
>gi|269219193|ref|ZP_06163047.1| primase [Actinomyces sp. oral taxon 848 str. F0332]
gi|269211340|gb|EEZ77680.1| primase [Actinomyces sp. oral taxon 848 str. F0332]
Length = 617
Score = 107 bits (266), Expect = 1e-20, Method: Composition-based stats.
Identities = 54/372 (14%), Positives = 121/372 (32%), Gaps = 51/372 (13%)
Query: 414 IFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE----- 468
I + + ++++ + ++G+ + ET Q T E + + S
Sbjct: 204 IVPVVDETMEAN--LVPVRNGVYNTETKQLEAFTPERVFLTKSPVRYDPQAVSPTKTLSD 261
Query: 469 -----FLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKS------- 515
F ++ F E EE + F V +L ++
Sbjct: 262 GDTWTFDCWLADLFDEDEERVTLFWEIVAASLRVYKSYEKAFFFY--------SSSGSSG 313
Query: 516 --TLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI 573
TL++L++ G + + ++ E ++G V+ ET+ + +
Sbjct: 314 KSTLLHLMRNILGQRNCASLSLGAFGKDFGCEP---------VLGVSAVLTDETDTHGFM 364
Query: 574 NAAK-IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF 632
K KQ D +T + P N+ + +A RR+I +PF
Sbjct: 365 KECKEFKQYVTHDVITIQRKGVKAVQWKPRGIVIQ-AGNELPEFSDKTEAMTRRFIFVPF 423
Query: 633 DKPIA-NRDASFAQKL--ETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQG 689
D+ A D S +L + + + L+ + + + E + +++ R
Sbjct: 424 DRCFAGEFDPSIKSELMVDREVQEYVLRRALE-----LPEFVSFTEGEATMALRQQARVQ 478
Query: 690 TDTYQAW-IDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFI 748
D+ W +++ + NL +S + + + +S + L+
Sbjct: 479 NDSVLEWWLEERGEFQTNL-IPWDFAFDVFSRWVARTNPGMKSAMSRKKFVQRLRAAAED 537
Query: 749 GGIKREKIEKEW 760
+ K+
Sbjct: 538 DSMWNPMRSKDS 549
>gi|6969760|gb|AAF33972.1| TD5R [Vaccinia virus Tian Tan]
Length = 785
Score = 107 bits (266), Expect = 1e-20, Method: Composition-based stats.
Identities = 62/311 (19%), Positives = 113/311 (36%), Gaps = 28/311 (9%)
Query: 346 LTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKST 405
L + + + + + + + E K S R +Y + + +
Sbjct: 334 LDTNSVLLTERGDYIVWINNSWKFNSEEPLITKLILSIRHQLPKEYSSELLCPRKRKTVE 393
Query: 406 AQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVEG 463
A + + S D+ L ++G+LDL G K+ T STG F +
Sbjct: 394 ANIRD----MLVDSVETDTYPDKLPFKNGVLDLVDGMFYSGDDAKKYTCTVSTGFKFDDT 449
Query: 464 ---EPSQEFLDLVSGY-------FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSG 513
E S E +L++ E+++ + + + + L G K G +G
Sbjct: 450 KFVEDSPEMEELMNIIKDIQPLTDENKKNRELYEKTLSSCLCGATKG-CLTFFFGETATG 508
Query: 514 KSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE---- 569
KST L+K A G+ +V I+ + + NP + + R V SE +
Sbjct: 509 KSTTKRLLKSAIGDLFVET--GQTILTDVLDKG--PNPFIANMHLKRSVFCSELPDFACS 564
Query: 570 -NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYI 628
+ +I + IK++T C+ R + N + + T I N D+A RR
Sbjct: 565 GSKKIRSDNIKKLT-EPCVIGRPCFSNKIN-NRNHATIIIDTNYKPVFDRIDNALMRRIA 622
Query: 629 VIPFDKPIANR 639
V+ F +
Sbjct: 623 VVRFRTHFSQP 633
>gi|137601|sp|P21010|VD05_VACCC RecName: Full=Protein D5
gi|335450|gb|AAA48102.1| putative D5R [Vaccinia virus Copenhagen]
Length = 785
Score = 107 bits (266), Expect = 1e-20, Method: Composition-based stats.
Identities = 62/311 (19%), Positives = 113/311 (36%), Gaps = 28/311 (9%)
Query: 346 LTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKST 405
L + + + + + + + E K S R +Y + + +
Sbjct: 334 LDTNSVLLTERGDYIVWINNSWKFNSEEPLITKLILSIRHQLPKEYSSELLCPRKRKTVE 393
Query: 406 AQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVEG 463
A + + S D+ L ++G+LDL G K+ T STG F +
Sbjct: 394 ANIRD----MLVDSVETDTYPDKLPFKNGVLDLVDGMFYSGDDAKKYTCTVSTGFKFDDT 449
Query: 464 ---EPSQEFLDLVSGY-------FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSG 513
E S E +L++ E+++ + + + + L G K G +G
Sbjct: 450 KFVEDSPEMEELMNIINDIQPLTDENKKNRELYEKTLSSCLCGATKG-CLTFFFGETATG 508
Query: 514 KSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE---- 569
KST L+K A G+ +V I+ + + NP + + R V SE +
Sbjct: 509 KSTTKRLLKSAIGDLFVET--GQTILTDVLDKG--PNPFIANMHLKRSVFCSELPDFACS 564
Query: 570 -NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYI 628
+ +I + IK++T C+ R + N + + T I N D+A RR
Sbjct: 565 GSKKIRSDNIKKLT-EPCVIGRPCFSNKIN-NRNHATIIIDTNYKPVFDRIDNALMRRIA 622
Query: 629 VIPFDKPIANR 639
V+ F +
Sbjct: 623 VVRFRTHFSQP 633
>gi|22595776|gb|AAN02808.1| putative NTPase [lumpy skin disease virus]
Length = 786
Score = 106 bits (265), Expect = 1e-20, Method: Composition-based stats.
Identities = 62/303 (20%), Positives = 109/303 (35%), Gaps = 45/303 (14%)
Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKP--TKELYITKSTG----TPFVEGEPSQE 468
+ + D+ L ++G+LD+ +G+ K +K+ T STG E SQE
Sbjct: 399 MLVDTIETDTYPFMLPFKNGVLDICSGKFYKGAESKKFICTVSTGFNLDIEQYLNEDSQE 458
Query: 469 FLDLVSGYF-------ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLI 521
DL + E++E + + R + L G K Q G +GKST L+
Sbjct: 459 MKDLNNIINDIQPLTEENKENRELYERTLSSCLCGSTK-QCLTFFFGETATGKSTTKKLL 517
Query: 522 KYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE-----NDEINAA 576
+ + G ++ I+ + + NP + + R V SE + + +I A
Sbjct: 518 QSSIGELFIET--GQTILTDIIDKG--PNPFISNMHLKRSVFCSELPDFSCSGSKKIKAD 573
Query: 577 KIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI 636
IK++T C+ R + N + + I N D+A RR ++ F
Sbjct: 574 NIKKLT-EPCIVGRPCFSNRIH-NKNHASIIIDTNYKPVFDKVDNALMRRIALVKFRTHF 631
Query: 637 AN------------------RDASFAQKLETKYTL-EAKKWFLKGVKAYISKGLD-VDIP 676
+ D + K++ KY +K + Y + P
Sbjct: 632 SQYSNSDSVKNNAAYDDVKPLDENLDMKIQKKYFRYAFLNLLVKWYQKYHIPTMRLFPTP 691
Query: 677 EVC 679
E
Sbjct: 692 EAI 694
>gi|9633891|ref|NP_051969.1| gp080R [Rabbit fibroma virus]
gi|6578610|gb|AAF17964.1|AF170722_82 gp080R [Rabbit fibroma virus]
Length = 786
Score = 106 bits (265), Expect = 1e-20, Method: Composition-based stats.
Identities = 61/303 (20%), Positives = 102/303 (33%), Gaps = 45/303 (14%)
Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVE----GEPSQE 468
+ D L ++G+LD+ G K+ T STG + S+E
Sbjct: 399 MLVDVTETDVYPCILPFKNGVLDISNGTFYSGHESKDFICTVSTGFNLNMEKFLDDDSEE 458
Query: 469 FLDLVSGYF-------ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLI 521
+LVS E+++ + + R + L G K Q G +GKST L+
Sbjct: 459 MKELVSIINDIQPLTEENKQNRELYERTLSSCLCGTTK-QCITFFFGETATGKSTTKKLL 517
Query: 522 KYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE-----NDEINAA 576
A GN ++ I+ + NP + + R V SE + + I A
Sbjct: 518 HSAIGNLFIET--GQTILTEAMDKG--PNPFIANMHLKRSVFCSELPDFACSTSRRIRAD 573
Query: 577 KIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI 636
IK++T C+ R + N + + + I N D+A RR ++ F
Sbjct: 574 NIKKLT-EPCIVGRQCFSNRIN-NKNHASIIIDTNYKPVFDRVDNAIMRRISLVRFRTHF 631
Query: 637 ANR------------------DASFAQKLETK-YTLEAKKWFLKGVKAYISKGLD-VDIP 676
A D + K++ Y ++ + Y L P
Sbjct: 632 AQTMTKKEMLNKSAYDDVKPLDETLDMKIQKNYYRYAFLNLLVQWYQKYHVPHLKLFSTP 691
Query: 677 EVC 679
E
Sbjct: 692 ENV 694
>gi|167412610|gb|ABZ80044.1| NTPase interacts with A20R [Vaccinia virus GLV-1h68]
Length = 785
Score = 106 bits (265), Expect = 1e-20, Method: Composition-based stats.
Identities = 55/242 (22%), Positives = 94/242 (38%), Gaps = 24/242 (9%)
Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVEG---EPSQEF 469
+ S D+ L ++G+LDL G K+ T STG F + E S E
Sbjct: 399 MLVDSVETDTYPDKLPFKNGVLDLVDGMFYSGDDAKKYTCTVSTGFKFDDTKFVEDSPEM 458
Query: 470 LDLVSGY-------FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIK 522
+L++ E+++ + + + + L G K G +GKST L+K
Sbjct: 459 EELMNIINDIQPLTDENKKNRELYEKTLSSCLCGATKG-CLTFFFGETATGKSTTKRLLK 517
Query: 523 YAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE-----NDEINAAK 577
A G+ +V I+ + + NP + + R V SE + + +I +
Sbjct: 518 SAIGDLFVET--GQTILTDVLDKG--PNPFIANMHLKRSVFCSELPDFACSGSKKIRSDN 573
Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637
IK++T C+ R + N + + T I N D+A RR V+ F +
Sbjct: 574 IKKLT-EPCVIGRPCFSNKIN-NRNHATIIIDTNYKPVFDRIDNALMRRIAVVRFRTHFS 631
Query: 638 NR 639
Sbjct: 632 QP 633
>gi|160857992|emb|CAM58280.1| DNA-dependent ATPase [Vaccinia virus Ankara]
Length = 785
Score = 106 bits (265), Expect = 1e-20, Method: Composition-based stats.
Identities = 55/242 (22%), Positives = 94/242 (38%), Gaps = 24/242 (9%)
Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVEG---EPSQEF 469
+ S D+ L ++G+LDL G K+ T STG F + E S E
Sbjct: 399 MLVDSVETDTYPDKLPFKNGVLDLVDGMFYSGDDAKKYTCTVSTGFKFDDTKFVEDSPEM 458
Query: 470 LDLVSGY-------FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIK 522
+L++ E+++ + + + + L G K G +GKST L+K
Sbjct: 459 EELMNIINDIQPLTDENKKNRELYEKTLSSCLCGATKG-CLTFFFGETATGKSTTKRLLK 517
Query: 523 YAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE-----NDEINAAK 577
A G+ +V I+ + + NP + + R V SE + + +I +
Sbjct: 518 SAIGDLFVET--GQTILTDVLDKG--PNPFIANMHLKRSVFCSELPDFACSGSKKIRSDN 573
Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637
IK++T C+ R + N + + T I N D+A RR V+ F +
Sbjct: 574 IKKLT-EPCVIGRPCFSNKIN-NRNHATIIIDTNYKPVFDRIDNALMRRIAVVRFRTHFS 631
Query: 638 NR 639
Sbjct: 632 QP 633
>gi|111184297|gb|ABH08217.1| HSPV111 [Horsepox virus]
Length = 785
Score = 106 bits (265), Expect = 1e-20, Method: Composition-based stats.
Identities = 55/242 (22%), Positives = 94/242 (38%), Gaps = 24/242 (9%)
Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVEG---EPSQEF 469
+ S D+ L ++G+LDL G K+ T STG F + E S E
Sbjct: 399 MLVDSVETDTYPDKLPFKNGVLDLVDGMFYSGDNAKKYTCTVSTGFKFDDTKFVEDSPEM 458
Query: 470 LDLVSGY-------FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIK 522
+L++ E+++ + + + + L G K G +GKST L+K
Sbjct: 459 EELMNIINDIQPLTDENKKNRELYEKTLSSCLCGATKG-CLTFFFGETATGKSTTKRLLK 517
Query: 523 YAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE-----NDEINAAK 577
A G+ +V I+ + + NP + + R V SE + + +I +
Sbjct: 518 SAIGDLFVET--GQTILTDVLDKG--PNPFIANMHLKRSVFCSELPDFACSGSKKIRSDN 573
Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637
IK++T C+ R + N + + T I N D+A RR V+ F +
Sbjct: 574 IKKLT-EPCVIGRPCFSNKIN-NRNHATIIIDTNYKPVFDRIDNALMRRIAVVRFRTHFS 631
Query: 638 NR 639
Sbjct: 632 QP 633
>gi|113195289|ref|YP_717419.1| NTPase [Taterapox virus]
gi|90660565|gb|ABD97678.1| NTPase [Taterapox virus]
Length = 785
Score = 106 bits (265), Expect = 1e-20, Method: Composition-based stats.
Identities = 55/242 (22%), Positives = 94/242 (38%), Gaps = 24/242 (9%)
Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVEG---EPSQEF 469
+ S D+ L ++G+LDL G K+ T STG F + E S E
Sbjct: 399 MLVDSVETDTYPDKLPFKNGVLDLVDGMFYSGDDAKKYTCTVSTGFKFDDTKFVEDSPEM 458
Query: 470 LDLVSGY-------FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIK 522
+L++ E+++ + + + + L G K G +GKST L+K
Sbjct: 459 EELMNIINDIQPLTDENKKNRELYEKTLSSCLCGATKG-CLTFFFGETATGKSTTKRLLK 517
Query: 523 YAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE-----NDEINAAK 577
A G+ +V I+ + + NP + + R V SE + + +I +
Sbjct: 518 SAIGDLFVET--GQTILTDVLDKG--PNPFIANMHLKRSVFCSELPDFACSGSKKIRSDN 573
Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637
IK++T C+ R + N + + T I N D+A RR V+ F +
Sbjct: 574 IKKLT-EPCVIGRPCFSNKIN-NRNHATIIIDTNYKPVFDRIDNALMRRIAVVRFRTHFS 631
Query: 638 NR 639
Sbjct: 632 QP 633
>gi|90660347|gb|ABD97461.1| NTPase [Cowpox virus]
Length = 785
Score = 106 bits (265), Expect = 1e-20, Method: Composition-based stats.
Identities = 55/242 (22%), Positives = 94/242 (38%), Gaps = 24/242 (9%)
Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVEG---EPSQEF 469
+ S D+ L ++G+LDL G K+ T STG F + E S E
Sbjct: 399 MLVDSVETDTYPDKLPFKNGVLDLVDGMFYSGDDAKKYTCTVSTGFKFDDTKFVEDSPEM 458
Query: 470 LDLVSGY-------FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIK 522
+L++ E+++ + + + + L G K G +GKST L+K
Sbjct: 459 EELMNIINDIQPLTDENKKNRELYEKTLSSCLCGATKG-CLTFFFGETATGKSTTKRLLK 517
Query: 523 YAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE-----NDEINAAK 577
A G+ +V I+ + + NP + + R V SE + + +I +
Sbjct: 518 SAIGDLFVET--GQTILTDVLDKG--PNPFIANMHLKRSVFCSELPDFACSGSKKIRSDN 573
Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637
IK++T C+ R + N + + T I N D+A RR V+ F +
Sbjct: 574 IKKLT-EPCVIGRPCFSNKIN-NRNHATIIIDTNYKPVFDRIDNALMRRIAVVRFRTHFS 631
Query: 638 NR 639
Sbjct: 632 QP 633
>gi|37551555|gb|AAQ93207.1| NTPase [Vaccinia virus]
gi|38348977|gb|AAR17953.1| NTPase [Vaccinia virus]
gi|88900728|gb|ABD57640.1| VACV106 [Vaccinia virus]
gi|90819770|gb|ABD98580.1| VACV-DUKE-118 [Vaccinia virus]
Length = 785
Score = 106 bits (265), Expect = 1e-20, Method: Composition-based stats.
Identities = 55/242 (22%), Positives = 94/242 (38%), Gaps = 24/242 (9%)
Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVEG---EPSQEF 469
+ S D+ L ++G+LDL G K+ T STG F + E S E
Sbjct: 399 MLVDSVETDTYPDKLPFKNGVLDLVDGMFYSGDNAKKYTCTVSTGFKFDDTKFVEDSPEM 458
Query: 470 LDLVSGY-------FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIK 522
+L++ E+++ + + + + L G K G +GKST L+K
Sbjct: 459 EELMNIINDIQPLTDENKKNRELYEKTLSSCLCGATKG-CLTFFFGETATGKSTTKRLLK 517
Query: 523 YAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE-----NDEINAAK 577
A G+ +V I+ + + NP + + R V SE + + +I +
Sbjct: 518 SAIGDLFVET--GQTILTDVLDKG--PNPFIANMHLKRSVFCSELPDFACSGSKKIRSDN 573
Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637
IK++T C+ R + N + + T I N D+A RR V+ F +
Sbjct: 574 IKKLT-EPCVIGRPCFSNKIN-NRNHATIIIDTNYKPVFDRIDNALMRRIAVVRFRTHFS 631
Query: 638 NR 639
Sbjct: 632 QP 633
>gi|51342262|gb|AAU01306.1| MPXV-WRAIR096 [Monkeypox virus]
gi|58220566|gb|AAW67854.1| MPXV-SL-096 [Monkeypox virus]
gi|59858902|gb|AAX09197.1| MPXV-COP-096 [Monkeypox virus]
gi|68448778|gb|AAY96901.1| NTPase [Monkeypox virus]
gi|68449380|gb|AAY97500.1| NTPase [Monkeypox virus]
gi|68449580|gb|AAY97699.1| NTPase [Monkeypox virus]
Length = 785
Score = 106 bits (265), Expect = 1e-20, Method: Composition-based stats.
Identities = 55/242 (22%), Positives = 94/242 (38%), Gaps = 24/242 (9%)
Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVEG---EPSQEF 469
+ S D+ L ++G+LDL G K+ T STG F + E S E
Sbjct: 399 MLVDSVETDTYPDKLPFKNGVLDLVDGMFYSGDDAKKYTCTVSTGFKFDDTKFVEDSPEM 458
Query: 470 LDLVSGY-------FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIK 522
+L++ E+++ + + + + L G K G +GKST L+K
Sbjct: 459 EELMNIINDIQPLTDENKKNRELYEKTLSSCLCGATKG-CLTFFFGETATGKSTTKRLLK 517
Query: 523 YAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE-----NDEINAAK 577
A G+ +V I+ + + NP + + R V SE + + +I +
Sbjct: 518 SAIGDLFVET--GQTILTDVLDKG--PNPFIANMHLKRSVFCSELPDFACSGSKKIRSDN 573
Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637
IK++T C+ R + N + + T I N D+A RR V+ F +
Sbjct: 574 IKKLT-EPCVIGRPCFSNKIN-NRNHATIIIDTNYKPVFDRIDNALMRRIAVVRFRTHFS 631
Query: 638 NR 639
Sbjct: 632 QP 633
>gi|30519484|emb|CAD90659.1| E5R protein [Cowpox virus]
Length = 785
Score = 106 bits (265), Expect = 1e-20, Method: Composition-based stats.
Identities = 55/242 (22%), Positives = 94/242 (38%), Gaps = 24/242 (9%)
Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVEG---EPSQEF 469
+ S D+ L ++G+LDL G K+ T STG F + E S E
Sbjct: 399 MLVDSVETDTYPDKLPFKNGVLDLVDGMFYSGDDAKKYTCTVSTGFKFDDTKFVEDSPEM 458
Query: 470 LDLVSGY-------FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIK 522
+L++ E+++ + + + + L G K G +GKST L+K
Sbjct: 459 EELMNIINDIQPLTDENKKNRELYEKTLSSCLCGATKG-CLTFFFGETATGKSTTKRLLK 517
Query: 523 YAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE-----NDEINAAK 577
A G+ +V I+ + + NP + + R V SE + + +I +
Sbjct: 518 SAIGDLFVET--GQTILTDVLDKG--PNPFIANMHLKRSVFCSELPDFACSGSKKIRSDN 573
Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637
IK++T C+ R + N + + T I N D+A RR V+ F +
Sbjct: 574 IKKLT-EPCVIGRPCFSNKIN-NRNHATIIIDTNYKPVFDRIDNALMRRIAVVRFRTHFS 631
Query: 638 NR 639
Sbjct: 632 QP 633
>gi|20178485|ref|NP_619906.1| CPXV122 protein [Cowpox virus]
gi|20153103|gb|AAM13564.1|AF482758_115 CPXV122 protein [Cowpox virus]
Length = 785
Score = 106 bits (265), Expect = 1e-20, Method: Composition-based stats.
Identities = 55/242 (22%), Positives = 94/242 (38%), Gaps = 24/242 (9%)
Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVEG---EPSQEF 469
+ S D+ L ++G+LDL G K+ T STG F + E S E
Sbjct: 399 MLVDSVETDTYPDKLPFKNGVLDLVDGMFYSGDDAKKYTCTVSTGFKFDDTKFVEDSPEM 458
Query: 470 LDLVSGY-------FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIK 522
+L++ E+++ + + + + L G K G +GKST L+K
Sbjct: 459 EELMNIINDIQPLTDENKKNRELYEKTLSSCLCGATKG-CLTFFFGETATGKSTTKRLLK 517
Query: 523 YAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE-----NDEINAAK 577
A G+ +V I+ + + NP + + R V SE + + +I +
Sbjct: 518 SAIGDLFVET--GQTILTDVLDKG--PNPFIANMHLKRSVFCSELPDFACSGSKKIRSDN 573
Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637
IK++T C+ R + N + + T I N D+A RR V+ F +
Sbjct: 574 IKKLT-EPCVIGRPCFSNKIN-NRNHATIIIDTNYKPVFDRIDNALMRRIAVVRFRTHFS 631
Query: 638 NR 639
Sbjct: 632 QP 633
>gi|22164699|ref|NP_671612.1| EVM094 [Ectromelia virus]
gi|22123840|gb|AAM92398.1|AF523264_94 EVM094 [Ectromelia virus]
Length = 785
Score = 106 bits (265), Expect = 1e-20, Method: Composition-based stats.
Identities = 55/242 (22%), Positives = 94/242 (38%), Gaps = 24/242 (9%)
Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVEG---EPSQEF 469
+ S D+ L ++G+LDL G K+ T STG F + E S E
Sbjct: 399 MLVDSVETDTYPDKLPFKNGVLDLVDGMFYSGDDAKKYTCTVSTGFKFDDTKFVEDSPEM 458
Query: 470 LDLVSGY-------FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIK 522
+L++ E+++ + + + + L G K G +GKST L+K
Sbjct: 459 EELMNIINDIQPLTDENKKNRELYEKTLSSCLCGATKG-CLTFFFGETATGKSTTKRLLK 517
Query: 523 YAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE-----NDEINAAK 577
A G+ +V I+ + + NP + + R V SE + + +I +
Sbjct: 518 SAIGDLFVET--GQTILTDVLDKG--PNPFIANMHLKRSVFCSELPDFACSGSKKIRSDN 573
Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637
IK++T C+ R + N + + T I N D+A RR V+ F +
Sbjct: 574 IKKLT-EPCVIGRPCFSNKIN-NRNHATIIIDTNYKPVFDRIDNALMRRIAVVRFRTHFS 631
Query: 638 NR 639
Sbjct: 632 QP 633
>gi|56713483|gb|AAW23523.1| putative NTPase [Vaccinia virus]
gi|56713767|gb|AAW23805.1| putative NTPase [Vaccinia virus]
Length = 785
Score = 106 bits (265), Expect = 1e-20, Method: Composition-based stats.
Identities = 55/242 (22%), Positives = 94/242 (38%), Gaps = 24/242 (9%)
Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVEG---EPSQEF 469
+ S D+ L ++G+LDL G K+ T STG F + E S E
Sbjct: 399 MLVDSVETDTYPDKLPFKNGVLDLVDGMFYSGDDAKKYTCTVSTGFKFDDTKFVEDSPEM 458
Query: 470 LDLVSGY-------FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIK 522
+L++ E+++ + + + + L G K G +GKST L+K
Sbjct: 459 EELMNIINDIQPLTDENKKNRELYEKTLSSCLCGATKG-CLTFFFGETATGKSTTKRLLK 517
Query: 523 YAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE-----NDEINAAK 577
A G+ +V I+ + + NP + + R V SE + + +I +
Sbjct: 518 SAIGDLFVET--GQTILTDVLDKG--PNPFIANMHLKRSVFCSELPDFACSGSKKIRSDN 573
Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637
IK++T C+ R + N + + T I N D+A RR V+ F +
Sbjct: 574 IKKLT-EPCVIGRPCFSNKIN-NRNHATIIIDTNYKPVFDRIDNALMRRIAVVRFRTHFS 631
Query: 638 NR 639
Sbjct: 632 QP 633
>gi|66275907|ref|YP_232992.1| NTPase [Vaccinia virus]
gi|137602|sp|P04305|VD05_VACCV RecName: Full=Protein D5
gi|335647|gb|AAA48259.1| ORF5 cds [Vaccinia virus]
gi|893340|gb|AAA69629.1| unknown protein [Vaccinia virus]
gi|29692216|gb|AAO89389.1| NTPase interacts with A20R [Vaccinia virus WR]
gi|88854163|gb|ABD52581.1| nucleic acid-independent nucleoside triphosphatase [Vaccinia virus]
Length = 785
Score = 106 bits (265), Expect = 1e-20, Method: Composition-based stats.
Identities = 55/242 (22%), Positives = 94/242 (38%), Gaps = 24/242 (9%)
Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVEG---EPSQEF 469
+ S D+ L ++G+LDL G K+ T STG F + E S E
Sbjct: 399 MLVDSVETDTYPDKLPFKNGVLDLVDGMFYSGDDAKKYTCTVSTGFKFDDTKFVEDSPEM 458
Query: 470 LDLVSGY-------FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIK 522
+L++ E+++ + + + + L G K G +GKST L+K
Sbjct: 459 EELMNIINDIQPLTDENKKNRELYEKTLSSCLCGATKG-CLTFFFGETATGKSTTKRLLK 517
Query: 523 YAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE-----NDEINAAK 577
A G+ +V I+ + + NP + + R V SE + + +I +
Sbjct: 518 SAIGDLFVET--GQTILTDVLDKG--PNPFIANMHLKRSVFCSELPDFACSGSKKIRSDN 573
Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637
IK++T C+ R + N + + T I N D+A RR V+ F +
Sbjct: 574 IKKLT-EPCVIGRPCFSNKIN-NRNHATIIIDTNYKPVFDRIDNALMRRIAVVRFRTHFS 631
Query: 638 NR 639
Sbjct: 632 QP 633
>gi|2772775|gb|AAB96514.1| putative 90.4k protein [Vaccinia virus]
gi|47088430|gb|AAT10500.1| NTPase [Vaccinia virus]
Length = 785
Score = 106 bits (265), Expect = 1e-20, Method: Composition-based stats.
Identities = 56/242 (23%), Positives = 94/242 (38%), Gaps = 24/242 (9%)
Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVEG---EPSQEF 469
I S D+ L ++G+LDL G K+ T STG F + E S E
Sbjct: 399 MLIDSVETDTYPDKLPFKNGVLDLVDGMFYSGDDAKKYTCTVSTGFKFDDTKFVEDSPEM 458
Query: 470 LDLVSGY-------FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIK 522
+L++ E+++ + + + + L G K G +GKST L+K
Sbjct: 459 EELMNIINDIQPLTDENKKNRELYEKTLSSCLCGATKG-CLTFFFGETATGKSTTKRLLK 517
Query: 523 YAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE-----NDEINAAK 577
A G+ +V I+ + + NP + + R V SE + + +I +
Sbjct: 518 SAIGDLFVET--GQTILTDVLDKG--PNPFIANMHLKRSVFCSELPDFACSGSKKIRSDN 573
Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637
IK++T C+ R + N + + T I N D+A RR V+ F +
Sbjct: 574 IKKLT-EPCVIGRPCFSNKIN-NRNHATIIIDTNYKPVFDRIDNALMRRIAVVRFRTHFS 631
Query: 638 NR 639
Sbjct: 632 QP 633
>gi|289168832|ref|YP_003447101.1| phage-related DNA primase [Streptococcus mitis B6]
gi|307711139|ref|ZP_07647561.1| poxvirus D5 protein-like family protein [Streptococcus mitis SK321]
gi|288908399|emb|CBJ23241.1| phage-related DNA primase [Streptococcus mitis B6]
gi|307617101|gb|EFN96279.1| poxvirus D5 protein-like family protein [Streptococcus mitis SK321]
Length = 498
Score = 106 bits (264), Expect = 2e-20, Method: Composition-based stats.
Identities = 55/329 (16%), Positives = 122/329 (37%), Gaps = 29/329 (8%)
Query: 436 LDLETGQKVKPTKELYITKSTGTPFVEGEPSQ--------EFLDLVSGYFESEEVMDYFT 487
+ +TG + T E+ T+ T + G +L + + +E+ +
Sbjct: 128 YNAKTGIFEETTPEITATRKIKTGYSPGAEEPIINGWKPTAWL--LELFDGDKELYNLAI 185
Query: 488 RCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAG 547
+ + ++ G Q+ + G GG+GK T L+ G + V + + + + +++ +
Sbjct: 186 QIIKASVTGQ-SLQKIFWLFGEGGTGKGTFQQLLINLVGMENVASLKITGLTKSQFSTSI 244
Query: 548 KANPSLIRLMGSRIVIISETNENDEI-NAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
L+G +VI + ++ I + + + + GD MT YS + T
Sbjct: 245 --------LLGKSLVIGDDVQKDAVIRDTSDMFSLATGDIMTIEDKGKRPYS-IRLNMTV 295
Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
N + A RR+ ++PF K + + A K + E ++ +K
Sbjct: 296 VQSSNGLPRMNGDKSAIDRRFRILPFTKIFKG-NPNKAIKDDYINRKEVLEYLVKLAIET 354
Query: 667 ISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIG-ENLWEESHSLAKSYSEYREQE 725
++ P ++ EE + + ++ + + + + + + E
Sbjct: 355 PIADIN---PTKSIEILEEHHKDMNPVIDFVSKFFTDELTSEFIPNSFVYHVWKGFLEYY 411
Query: 726 L-NYDRKRIS-TRTVTLNLKQKGFIGGIK 752
+R + R + NL + GF G K
Sbjct: 412 GIKENRSEMGLHREIKSNLPE-GFAVGQK 439
>gi|18640342|ref|NP_570498.1| CMLV108 [Camelpox virus]
gi|18483018|gb|AAL73815.1|AF438165_105 putative NTPase [Camelpox virus M-96]
Length = 785
Score = 105 bits (263), Expect = 2e-20, Method: Composition-based stats.
Identities = 54/244 (22%), Positives = 93/244 (38%), Gaps = 28/244 (11%)
Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVEG---EPSQEF 469
+ S D+ L ++G+LDL G K+ T STG F + E S E
Sbjct: 399 MLVDSVETDTYPDKLPFKNGVLDLVDGMFYSGDDAKKYTCTVSTGFKFDDTKFVEDSPEM 458
Query: 470 LDLVSGY-------FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIK 522
+L++ E+++ + + + + L G K G +GKST L+K
Sbjct: 459 KELMNIINDIQPLTDENKKNRELYEKTLSSCLCGATKG-CLTFFFGETATGKSTTKRLLK 517
Query: 523 YAFGNQY--VINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE-----NDEINA 575
A G+ + +D++ NP + + R V SE + + +I +
Sbjct: 518 SAIGDLFVETGQIILTDVLDK------GPNPFIANMHLKRSVFCSELPDFACSGSKKIRS 571
Query: 576 AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP 635
IK++T C+ R + N + + T I N D+A RR V+ F
Sbjct: 572 DNIKKLT-EPCVIGRPCFSNKIN-NRNHATIIIDTNYKPVFDRIDNALMRRIAVVRFRTH 629
Query: 636 IANR 639
+
Sbjct: 630 FSQP 633
>gi|19718057|gb|AAG37582.1| CMP107R [Camelpox virus CMS]
Length = 785
Score = 105 bits (263), Expect = 2e-20, Method: Composition-based stats.
Identities = 54/244 (22%), Positives = 93/244 (38%), Gaps = 28/244 (11%)
Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVEG---EPSQEF 469
+ S D+ L ++G+LDL G K+ T STG F + E S E
Sbjct: 399 MLVDSVETDTYPDKLPFKNGVLDLVDGMFYSGDDAKKYTCTVSTGFKFDDTKFVEDSPEM 458
Query: 470 LDLVSGY-------FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIK 522
+L++ E+++ + + + + L G K G +GKST L+K
Sbjct: 459 KELMNIINDIQPLTDENKKNRELYEKTLSSCLCGATKG-CLTFFFGETATGKSTTKRLLK 517
Query: 523 YAFGNQY--VINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE-----NDEINA 575
A G+ + +D++ NP + + R V SE + + +I +
Sbjct: 518 SAIGDLFVETGQIILTDVLDK------GPNPFIANMHLKRSVFCSELPDFACSGSKKIRS 571
Query: 576 AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP 635
IK++T C+ R + N + + T I N D+A RR V+ F
Sbjct: 572 DNIKKLT-EPCVIGRPCFSNKIN-NRNHATIIIDTNYKPVFDRIDNALMRRIAVVRFRTH 629
Query: 636 IANR 639
+
Sbjct: 630 FSQP 633
>gi|18640166|ref|NP_570240.1| SPV080 putative NTPase [Swinepox virus]
gi|18448573|gb|AAL69819.1| SPV080 putative NTPase [Swinepox virus]
Length = 786
Score = 105 bits (263), Expect = 2e-20, Method: Composition-based stats.
Identities = 50/252 (19%), Positives = 94/252 (37%), Gaps = 29/252 (11%)
Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKP--TKELYITKSTGTPFV-------EGEP 465
+ + D+ L ++GIL++ TG+ +K+ T STG E
Sbjct: 399 MLVDNIETDTYPNMLPFKNGILNISTGEFYTGVESKDFICTVSTGFELDMEKFSDTESTE 458
Query: 466 SQEFLDLVSGYFE--SEEV--MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLI 521
+E +++ E + F + + L G K Q G +GKST L+
Sbjct: 459 MKELETILNDIQPLTDENRCNRELFEKILSSCLHGSTK-QCITFFFGETATGKSTTKKLL 517
Query: 522 KYAFGNQY--VINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE-----NDEIN 574
+ + G+ + +++M NP + + R V SE + + +I
Sbjct: 518 RSSIGDLFIETGQTILTEVMDK------GPNPFISNMHLKRSVFCSELPDFACSGSKKIR 571
Query: 575 AAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK 634
A IK++T C+ R + N + + T I N D+A RR ++ F
Sbjct: 572 ADNIKKLTET-CIVGRACFSNKIN-NRNHATIIIDTNYKPIFDRVDNALMRRISLVKFRT 629
Query: 635 PIANRDASFAQK 646
++ + +
Sbjct: 630 HFTQPSSNISTR 641
>gi|15150522|ref|NP_150517.1| LSDV083 putative NTPase [Lumpy skin disease virus NI-2490]
gi|15149094|gb|AAK85044.1| LSDV083 putative NTPase [Lumpy skin disease virus NI-2490]
gi|22595618|gb|AAN02651.1| putative NTPase [Lumpy skin disease virus NW-LW]
Length = 786
Score = 105 bits (263), Expect = 2e-20, Method: Composition-based stats.
Identities = 61/303 (20%), Positives = 108/303 (35%), Gaps = 45/303 (14%)
Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKP--TKELYITKSTG----TPFVEGEPSQE 468
+ + D+ L ++G+LD+ +G+ K +K+ T STG E SQE
Sbjct: 399 MLVDTIETDTYPFMLPFKNGVLDICSGKFYKGAESKKFICTVSTGFNLDIEQYLNEDSQE 458
Query: 469 FLDLVSGYF-------ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLI 521
DL + E++E + + R + L G K Q G +GKST L+
Sbjct: 459 MKDLNNIINDIQPLTEENKENRELYERTLSSCLCGSTK-QCLTFFFGETATGKSTTKKLL 517
Query: 522 KYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE-----NDEINAA 576
+ + G ++ I+ + + NP + + R V SE + + +I A
Sbjct: 518 QSSIGELFIET--GQTILTDIIDKG--PNPFISNMHLKRSVFCSELPDFSCSGSKKIKAD 573
Query: 577 KIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI 636
IK++T C+ R + N + + I N D+A RR ++ F
Sbjct: 574 NIKKLT-EPCIVGRPCFSNRIH-NKNHASIIIDTNYKPVFDKVDNALMRRIALVKFRTHF 631
Query: 637 AN------------------RDASFAQKLETKYTL-EAKKWFLKGVKAYISKGLD-VDIP 676
+ D + K++ Y +K + Y + P
Sbjct: 632 SQYSNSDSVKNNAAYDDVKPLDENLDMKIQKNYFRYAFLNLLVKWYQKYHIPTMRLFPTP 691
Query: 677 EVC 679
E
Sbjct: 692 EAI 694
>gi|23012376|ref|ZP_00052477.1| hypothetical protein Magn03006897 [Magnetospirillum magnetotacticum
MS-1]
Length = 543
Score = 105 bits (263), Expect = 2e-20, Method: Composition-based stats.
Identities = 45/238 (18%), Positives = 86/238 (36%), Gaps = 29/238 (12%)
Query: 10 AKQAIHNGFKLIPLRLGDKR-PQRLGK----W---EEQLLSSEKI----DKLPACGFGFV 57
A + G+ + P D R P ++ W + +L + ++ P+ +
Sbjct: 50 APDLVALGWSVFPQNRDDCRGPGKVHGTSFPWKPLQTRLPTDRELRELVTFCPSHNVAGI 109
Query: 58 CGVGEQPLYAFDIDSKDEKTANTF-KDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKK 116
G A D+D D + + IL TP R+G+ P+I++ +R K
Sbjct: 110 LGPSSAHTCAIDVDVGDLDLSLAIVERADSILGYTPFRRVGRDPRIILIYREAGAATAKS 169
Query: 117 KTT--------ESTQGH-LDILGCGQYFVAYNIHPKTKKEYTWTT-PPHRFKVEDTPLLS 166
+ +GH ++IL G + +H KT K + W PH E+ ++
Sbjct: 170 DALIRQKKLWLQGPEGHMIEILARGAPVTFFGLHHKTGKYFLWLDRSPHVAPPEEAREVT 229
Query: 167 EEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNG 224
+ ++ + PL + ++TWT + GE+ +N
Sbjct: 230 RDQIDEFLDAVNAL-RPLKAGTGRLAMAETWT-----YDAEAGLHVPAELGGEDEWNE 281
>gi|225194770|gb|ACN81893.1| DNA-dependent NTPase [Skunkpox virus]
Length = 785
Score = 105 bits (263), Expect = 2e-20, Method: Composition-based stats.
Identities = 56/242 (23%), Positives = 94/242 (38%), Gaps = 24/242 (9%)
Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVEG---EPSQEF 469
+ S D+ L ++G+LDL G K+ T STG F + E S E
Sbjct: 399 MLVDSVETDTYPDKLPFKNGVLDLVDGMFYSGDEAKKYTCTVSTGFRFDDTKFVEESPEM 458
Query: 470 LDLVSGY-------FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIK 522
+LV+ E+++ + + + + L G K G +GKST L+K
Sbjct: 459 EELVNIINDIQPLTDENKKNRELYEKTLSSCLCGTTKG-CLTFFFGETATGKSTTKRLLK 517
Query: 523 YAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE-----NDEINAAK 577
A G+ +V I+ + + NP + + R V SE + + +I +
Sbjct: 518 SAIGDLFVET--GQTILTDVLDKG--PNPFIANMHLKRSVFCSELPDFACSGSKKIRSDN 573
Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637
IK++T C+ R + N + + T I N D+A RR V+ F +
Sbjct: 574 IKKLT-EPCVIGRPCFSNKIN-NRNHATIIIDTNYKPVFDRIDNALMRRIAVVRFRTHFS 631
Query: 638 NR 639
Sbjct: 632 QP 633
>gi|61228|emb|CAA35068.1| ORF FPD5 [Fowlpox virus]
Length = 791
Score = 105 bits (263), Expect = 2e-20, Method: Composition-based stats.
Identities = 53/292 (18%), Positives = 103/292 (35%), Gaps = 26/292 (8%)
Query: 362 MKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDL 421
++V+ + E+ + K R ++D + ++ + I +
Sbjct: 354 WLKNVWRMCEDDNNITKLILYMRDHLSSDCTDLLLCPRNRKVIEHNLKD----MLIDTIE 409
Query: 422 LDSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVEGEPSQEFLDLVSGYFES 479
D+ L +G+ D++ + K+ T STG + EG + + +
Sbjct: 410 TDTYPEKLQFLNGVYDIKDSIFYQGNDAKKFVCTVSTGYKYEEGINVDDITTELMSILDD 469
Query: 480 E--------EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVI 531
E + + + + L+G K Q G +GKST L+K +
Sbjct: 470 IQPKTKENFENRELYEQILSSCLMGTTK-QCIFFFYGETATGKSTTKKLLKSVM--HNMF 526
Query: 532 NAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE-----NDEINAAKIKQMTGGDC 586
I+ + + NP + + R+V SE + + +I + IK++T C
Sbjct: 527 LETGQVILTEQMDKG--PNPFIANMHLKRVVFCSELPDFSYNTSKKIRSDNIKKLT-EPC 583
Query: 587 MTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN 638
+ R Y N + + T I N D+A RR ++ F N
Sbjct: 584 VVGRSCYSNKIN-NRNHATIIIDTNYKPVFDKVDNAIMRRIALVNFKTHFTN 634
>gi|9634728|ref|NP_039021.1| NTPase, DNA replication [Fowlpox virus]
gi|19857121|sp|P21969|VD05_FOWPN RecName: Full=Protein FPV058
gi|7271556|gb|AAF44402.1|AF198100_49 ORF FPV058 NTPase, DNA replication [Fowlpox virus]
gi|41023349|emb|CAE52603.1| DNA replication complex protein D5R orthologue [Fowlpox virus
isolate HP-438/Munich]
Length = 791
Score = 105 bits (263), Expect = 2e-20, Method: Composition-based stats.
Identities = 53/292 (18%), Positives = 103/292 (35%), Gaps = 26/292 (8%)
Query: 362 MKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDL 421
++V+ + E+ + K R ++D + ++ + I +
Sbjct: 354 WLKNVWRMCEDDNNITKLILYMRDHLSSDCTDLLLCPRNRKVIEHNLKD----MLIDTIE 409
Query: 422 LDSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVEGEPSQEFLDLVSGYFES 479
D+ L +G+ D++ + K+ T STG + EG + + +
Sbjct: 410 TDTYPEKLQFLNGVYDIKDSIFYQGNDAKKFVCTVSTGYKYEEGINVDDITTELMSILDD 469
Query: 480 E--------EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVI 531
E + + + + L+G K Q G +GKST L+K +
Sbjct: 470 IQPKTKENFENRELYEQILSSCLMGTTK-QCIFFFYGETATGKSTTKKLLKSVM--HNMF 526
Query: 532 NAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE-----NDEINAAKIKQMTGGDC 586
I+ + + NP + + R+V SE + + +I + IK++T C
Sbjct: 527 LETGQVILTEQMDKG--PNPFIANMHLKRVVFCSELPDFSCNTSKKIRSDNIKKLT-EPC 583
Query: 587 MTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN 638
+ R Y N + + T I N D+A RR ++ F N
Sbjct: 584 VVGRSCYSNKIN-NRNHATIIIDTNYKPVFDKVDNAIMRRIALVNFKTHFTN 634
>gi|67925585|ref|ZP_00518913.1| hypothetical protein CwatDRAFT_0747 [Crocosphaera watsonii WH 8501]
gi|67852574|gb|EAM48005.1| hypothetical protein CwatDRAFT_0747 [Crocosphaera watsonii WH 8501]
Length = 288
Score = 105 bits (263), Expect = 2e-20, Method: Composition-based stats.
Identities = 58/283 (20%), Positives = 92/283 (32%), Gaps = 38/283 (13%)
Query: 22 PLRL-----GDKRPQRLGKWEEQLLSSEKIDKLPAC----------------GFGFVCGV 60
P G K+P S+ I G G +CG
Sbjct: 11 PHWPLTLVNGKKQPLGKNWQRNPYTPSQAIAIFQQGYVTLGGEKGSYRVKPLGIGILCGH 70
Query: 61 GEQP-LYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTT 119
+ L+A D D +A+ L T G+ + +++ K
Sbjct: 71 NSKEFLFAIDCDGI---SAHRSLQRLGQLPPTVSFTSGRPGRCQYLYKLPSHKQIKSCKV 127
Query: 120 ESTQGHL-DILG-CGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFF 177
+ G + +I G Q + + HP T + Y W P +V P ++L ++
Sbjct: 128 TTAPGEVLEIRGSHHQSVLPPSPHPITGQ-YRWVNSPADVEVAIAP-------QWLVQWI 179
Query: 178 QEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVH 237
T K K + P + + T+ E L +Y +D WI V MA+
Sbjct: 180 DLQTYKPSKPKNNRKPFHQNVSKLDTPSTSEEAAVALLDLIPSYYADDYDSWIKVGMALK 239
Query: 238 HETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDT 280
S E RWS+Q + YKW TF+ I +
Sbjct: 240 SI---SPVLLEAWDRWSRQSKKWKPGECAYKWRTFNGVGISER 279
>gi|323098511|gb|ADX22749.1| NTPase [Monkeypox virus]
gi|323098708|gb|ADX22945.1| NTPase [Monkeypox virus]
Length = 785
Score = 105 bits (262), Expect = 3e-20, Method: Composition-based stats.
Identities = 55/242 (22%), Positives = 94/242 (38%), Gaps = 24/242 (9%)
Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVEG---EPSQEF 469
+ S D+ L ++G+LDL G K+ T STG F + E S E
Sbjct: 399 MLVDSVETDTYPDKLPFKNGVLDLVDGMFYSGDDAKKYTCTVSTGFKFDDTKFVENSPEM 458
Query: 470 LDLVSGY-------FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIK 522
+L++ E+++ + + + + L G K G +GKST L+K
Sbjct: 459 EELMNIINDIQPLTDENKKNRELYEKTLSSCLCGATKG-CLTFFFGETATGKSTTKRLLK 517
Query: 523 YAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE-----NDEINAAK 577
A G+ +V I+ + + NP + + R V SE + + +I +
Sbjct: 518 SAIGDLFVET--GQTILTDVLDKG--PNPFIANMHLKRSVFCSELPDFACSGSKKIRSDN 573
Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637
IK++T C+ R + N + + T I N D+A RR V+ F +
Sbjct: 574 IKKLT-EPCVIGRPCFSNKIN-NRNHATIIIDTNYKPVFDRIDNALMRRIAVVRFRTHFS 631
Query: 638 NR 639
Sbjct: 632 QP 633
>gi|17975015|ref|NP_536529.1| E5R [Monkeypox virus Zaire-96-I-16]
gi|17529882|gb|AAL40560.1|AF380138_102 E5R [Monkeypox virus Zaire-96-I-16]
gi|68448979|gb|AAY97101.1| NTPase [Monkeypox virus]
gi|68449181|gb|AAY97302.1| NTPase [Monkeypox virus]
gi|300872725|gb|ADK39127.1| NTPase [Monkeypox virus]
Length = 785
Score = 105 bits (262), Expect = 3e-20, Method: Composition-based stats.
Identities = 55/242 (22%), Positives = 94/242 (38%), Gaps = 24/242 (9%)
Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVEG---EPSQEF 469
+ S D+ L ++G+LDL G K+ T STG F + E S E
Sbjct: 399 MLVDSVETDTYPDKLPFKNGVLDLVDGMFYSGDDAKKYTCTVSTGFKFDDTKFVENSPEM 458
Query: 470 LDLVSGY-------FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIK 522
+L++ E+++ + + + + L G K G +GKST L+K
Sbjct: 459 EELMNIINDIQPLTDENKKNRELYEKTLSSCLCGATKG-CLTFFFGETATGKSTTKRLLK 517
Query: 523 YAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE-----NDEINAAK 577
A G+ +V I+ + + NP + + R V SE + + +I +
Sbjct: 518 SAIGDLFVET--GQTILTDVLDKG--PNPFIANMHLKRSVFCSELPDFACSGSKKIRSDN 573
Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637
IK++T C+ R + N + + T I N D+A RR V+ F +
Sbjct: 574 IKKLT-EPCVIGRPCFSNKIN-NRNHATIIIDTNYKPVFDRIDNALMRRIAVVRFRTHFS 631
Query: 638 NR 639
Sbjct: 632 QP 633
>gi|148912960|ref|YP_001293274.1| hypothetical protein GTPV_gp079 [Goatpox virus Pellor]
Length = 786
Score = 105 bits (262), Expect = 3e-20, Method: Composition-based stats.
Identities = 61/303 (20%), Positives = 108/303 (35%), Gaps = 45/303 (14%)
Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKP--TKELYITKSTG----TPFVEGEPSQE 468
+ + D+ L ++G+LD+ +G+ K +K+ T STG E SQE
Sbjct: 399 MLVDTIETDTYPFMLPFKNGVLDICSGKFYKGAESKKFICTVSTGFNLDIEKYLNEDSQE 458
Query: 469 FLDLVSGYF-------ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLI 521
DL + E++E + + R + L G K Q G +GKST L+
Sbjct: 459 MKDLNNIINDIQPLTEENKENRELYERTLSSCLCGSTK-QCLTFFFGETATGKSTTKKLL 517
Query: 522 KYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE-----NDEINAA 576
+ + G ++ I+ + + NP + + R V SE + + +I A
Sbjct: 518 QSSIGELFIET--GQTILTDIIDKG--PNPFISNMHLKRSVFCSELPDFSCSGSKKIKAD 573
Query: 577 KIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI 636
IK++T C+ R + N + + I N D+A RR ++ F
Sbjct: 574 NIKKLT-EPCIVGRPCFSNRIH-NKNHASIIIDTNYKPVFDKVDNALMRRIALVKFRTHF 631
Query: 637 AN------------------RDASFAQKLETKYTL-EAKKWFLKGVKAYISKGLD-VDIP 676
+ D + K++ Y +K + Y + P
Sbjct: 632 SQYSNSDSVKNNAAYDDVKPLDENLDMKIQKNYFRYAFLNLLVKWYQRYHIPTMRLFPTP 691
Query: 677 EVC 679
E
Sbjct: 692 EAI 694
>gi|21492536|ref|NP_659655.1| NTPase; DNA replication [Sheeppox virus]
Length = 786
Score = 105 bits (262), Expect = 3e-20, Method: Composition-based stats.
Identities = 61/303 (20%), Positives = 108/303 (35%), Gaps = 45/303 (14%)
Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKP--TKELYITKSTG----TPFVEGEPSQE 468
+ + D+ L ++G+LD+ +G+ K +K+ T STG E SQE
Sbjct: 399 MLVDTIETDTYPFMLPFKNGVLDICSGKFYKGAESKKFICTVSTGFNLDIEKYLNEDSQE 458
Query: 469 FLDLVSGYF-------ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLI 521
DL + E++E + + R + L G K Q G +GKST L+
Sbjct: 459 MKDLNNIINDIQPLTEENKENRELYERTLSSCLCGSTK-QCLTFFFGETATGKSTTKKLL 517
Query: 522 KYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE-----NDEINAA 576
+ + G ++ I+ + + NP + + R V SE + + +I A
Sbjct: 518 QSSIGELFIET--GQTILTDIIDKG--PNPFISNMHLKRSVFCSELPDFSCSGSKKIKAD 573
Query: 577 KIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI 636
IK++T C+ R + N + + I N D+A RR ++ F
Sbjct: 574 NIKKLT-EPCIVGRPCFSNRIH-NKNHASIIIDTNYKPVFDKVDNALMRRIALVKFRTHF 631
Query: 637 AN------------------RDASFAQKLETKYTL-EAKKWFLKGVKAYISKGLD-VDIP 676
+ D + K++ Y +K + Y + P
Sbjct: 632 SQYSNSDSVKNNAAYDDVKPLDENLDMKIQKNYFRYAFLNLLVKWYQKYHIPTMRLFPTP 691
Query: 677 EVC 679
E
Sbjct: 692 EAI 694
>gi|38229245|ref|NP_938338.1| 83R [Yaba monkey tumor virus]
gi|38000516|gb|AAR07439.1| 83R [Yaba monkey tumor virus]
Length = 786
Score = 105 bits (261), Expect = 4e-20, Method: Composition-based stats.
Identities = 57/305 (18%), Positives = 104/305 (34%), Gaps = 49/305 (16%)
Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKV--KPTKELYITKSTGTPFVEG--------- 463
+ + D+ L ++G+LD+ +G + +K+ T ST F
Sbjct: 399 MLVDTVETDTYPHILPFKNGVLDITSGSFYYGEESKKFICTVSTDFNFEMDKFLDNDSNE 458
Query: 464 --EPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLI 521
E + D+ E+ + + + R + L G K Q G +GKST L+
Sbjct: 459 IKELTCIIDDIQPKTCENLKNRELYERTLSSCLCGSTK-QCITFFFGETATGKSTTKRLL 517
Query: 522 KYAFGNQY--VINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE-----NDEIN 574
+ A G+ + +D+M NP + + R V SE + + +I
Sbjct: 518 QSAIGDLFIETGQTILTDLMDK------GPNPFISNMHLKRSVFCSELPDFACSGSKKIR 571
Query: 575 AAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK 634
A +K++T C+ R + N + + + I N D A RR +I F
Sbjct: 572 ADNVKKLT-EPCIVGRSCFSNKIN-NRNHASIIIDTNYKPIFDRVDCALMRRVSLIKFRT 629
Query: 635 PIANR------------------DASFAQKLETK-YTLEAKKWFLKGVKAYISKGLD-VD 674
+ D + K++ K Y +K + Y +
Sbjct: 630 HFSQPTNVEAAKSNSAYDDVKPLDENLDMKIQKKCYRFAFLNMLVKWYQKYHVPTMRLFP 689
Query: 675 IPEVC 679
P+
Sbjct: 690 TPDAV 694
>gi|313576825|gb|ADR67001.1| bacteriophage P4 DNA primase [Klebsiella pneumoniae subsp.
pneumoniae]
Length = 271
Score = 104 bits (260), Expect = 5e-20, Method: Composition-based stats.
Identities = 47/274 (17%), Positives = 90/274 (32%), Gaps = 46/274 (16%)
Query: 492 MALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANP 551
M L Q F+ + G GGSGKS L + G +A + R
Sbjct: 1 MVLANRYDWQLFLDVTGTGGSGKSILAEIATLLAGEDNATSATIETLESPRER------- 53
Query: 552 SLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPN 611
L+G ++ + + ++ + A +K +TGGD ++ Y + YS + V N
Sbjct: 54 --AALIGFPLIRLPDQDK-WSGDGAGLKAITGGDAVSVDPKYRDAYSAYIPA-VILAVNN 109
Query: 612 KHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISK 669
+ N RR ++I F + IA RD K+ + + ++ +
Sbjct: 110 NPMRFTNRSGGVSRRRVIIHFPEQIAPEERDPQLRDKIARELAVIVRQLMQR-------- 161
Query: 670 GLDVDIPEVCLKAKEEE---------RQGTDTYQAW---IDDCCDIGENL--------WE 709
P + + ++ D + +++ + G +
Sbjct: 162 ---FRDPMTARTLLQSQQNSDEALSIKRDADPTFDFCGYLEELPEPGGMYMGNANIVPRQ 218
Query: 710 ESHSLAKSYSEYREQELNYDRKRISTRTVTLNLK 743
L +Y Y + Y + +S L
Sbjct: 219 PRLYLYHAYLVY-MEAHGY-KNTLSLTMFGKGLS 250
>gi|225194734|gb|ACN81875.1| DNA-dependent NTPase [Volepox virus]
Length = 785
Score = 104 bits (259), Expect = 7e-20, Method: Composition-based stats.
Identities = 56/242 (23%), Positives = 94/242 (38%), Gaps = 24/242 (9%)
Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVE---GEPSQEF 469
+ S D+ L ++G+LDL G K+ T STG F + E S E
Sbjct: 399 MLVDSVETDTYPDKLPFKNGVLDLVDGMFYSGDEAKKYTCTVSTGFRFDDVKFIEGSPEM 458
Query: 470 LDLVSGY-------FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIK 522
+LV+ E+++ + + + + L G K G +GKST L+K
Sbjct: 459 EELVNIINDIQPLTDENKKNRELYEKTLSSCLCGATKG-CLTFFFGETATGKSTTKRLLK 517
Query: 523 YAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE-----NDEINAAK 577
A G+ +V I+ + + NP + + R V SE + + +I +
Sbjct: 518 SAIGDLFVET--GQTILTDVLDKG--PNPFIANMHLKRSVFCSELPDFACSGSKKIRSDN 573
Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637
IK++T C+ R + N + + T I N D+A RR V+ F +
Sbjct: 574 IKKLT-EPCVIGRPCFSNKIN-NRNHATIIIDTNYKPVFDRIDNALMRRIAVVRFRTHFS 631
Query: 638 NR 639
Sbjct: 632 QP 633
>gi|10956537|ref|NP_043130.1| DNA primase [Lactobacillus delbrueckii]
gi|971480|emb|CAA90741.1| DNA primase [Lactobacillus delbrueckii]
Length = 598
Score = 102 bits (254), Expect = 2e-19, Method: Composition-based stats.
Identities = 46/345 (13%), Positives = 100/345 (28%), Gaps = 39/345 (11%)
Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ-----------EFLDL 472
++ RF+ ++G+ D++ + + + + + ++++
Sbjct: 210 TNPRFIPFRNGVYDMQQHKLTPFSPKHPFLYKLPFDYNPKATQEPEFGSKHWKLSKWINA 269
Query: 473 VSGYFE--SEEVMDYFTRCVGMALLGGNKAQRFIHIR---GVGGSGKSTLMNLIKYAFGN 527
+S E + + AL + A G G SGK T LI G
Sbjct: 270 LSMSDGYFDENKNKLIWQILACALHLHSPAGDLAFWLIDNGHGRSGKGTFQALITNLAGV 329
Query: 528 QYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCM 587
V + + ++ L+ +VI + + + + D +
Sbjct: 330 NNVGSLKIAEF---------GHRFRTAALL-KPVVIGDDNPPTYISDNSNFRSAVTHDQV 379
Query: 588 TARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKL 647
Y P S N ++ A RR VI F+ + K
Sbjct: 380 FVETKGKQGYDIYPRS-LIIQSMNNFPKFKDTTFANLRRQRVIKFNHEFKEGEFDPNIKG 438
Query: 648 ETKYTLEAKKWFLKGVKAYI--SKGLDVDIPEVC-----LKAKEEERQGTDTYQAWIDDC 700
+ + +W I + ++DI + + E ++ D + +
Sbjct: 439 KYMQDPKLLEWL---ALKIITEEEAGNLDIDNIVNTSESDELLEGMQRDNDPVFNFASEL 495
Query: 701 CDIGENLWEESHSL-AKSYSEYREQELNYDRKRISTRTVTLNLKQ 744
S L + + ++ + + R LKQ
Sbjct: 496 LTGDIKSTVFSTDLMYNIFLAW-NEDSEHVSINMRPRRFKNELKQ 539
>gi|109724952|gb|ABG44074.1| NTPase [Variola virus]
Length = 785
Score = 102 bits (253), Expect = 3e-19, Method: Composition-based stats.
Identities = 54/242 (22%), Positives = 92/242 (38%), Gaps = 24/242 (9%)
Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVEG---EPSQEF 469
+ S D+ L ++G+LDL G K+ T STG F + E S E
Sbjct: 399 MLVDSVETDTYPDKLPFKNGVLDLVDGMFYSGDDAKKYTCTVSTGFKFDDTKFVEDSPEM 458
Query: 470 LDLVSGY-------FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIK 522
+L++ E+++ + + + + L G K G +GKST L+K
Sbjct: 459 EELINIINDIQPLTDENKKNRELYEKTLSSCLCGATKG-CLTFFFGETATGKSTTKRLLK 517
Query: 523 YAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN-----DEINAAK 577
A + +V I+ + + NP + + R V SE + +I +
Sbjct: 518 SAISDLFVET--GQTILTDVLDKG--PNPFIANMHLKRSVFCSELPDFACSGTKKIRSDN 573
Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637
IK++T C+ R + N + + T I N D+A RR V+ F +
Sbjct: 574 IKKLT-EPCVIGRPCFSNKIN-NRNHATIIIDTNYKPVFDRIDNALMRRIAVVRFRTHFS 631
Query: 638 NR 639
Sbjct: 632 QP 633
>gi|94485354|gb|ABF24463.1| NTPase [Variola virus]
gi|94485557|gb|ABF24665.1| NTPase [Variola virus]
gi|94488191|gb|ABF27286.1| NTPase [Variola virus]
gi|94488391|gb|ABF27485.1| NTPase [Variola virus]
gi|109726175|gb|ABG45291.1| NTPase [Variola virus]
Length = 785
Score = 102 bits (253), Expect = 3e-19, Method: Composition-based stats.
Identities = 54/242 (22%), Positives = 92/242 (38%), Gaps = 24/242 (9%)
Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVEG---EPSQEF 469
+ S D+ L ++G+LDL G K+ T STG F + E S E
Sbjct: 399 MLVDSVETDTYPDKLPFKNGVLDLVDGMFYSGDDAKKYTCTVSTGFKFDDTKFVEDSPEM 458
Query: 470 LDLVSGY-------FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIK 522
+L++ E+++ + + + + L G K G +GKST L+K
Sbjct: 459 EELINIINDIQPLTDENKKNRELYEKTLSSCLCGATKG-CLTFFFGETATGKSTTKRLLK 517
Query: 523 YAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN-----DEINAAK 577
A + +V I+ + + NP + + R V SE + +I +
Sbjct: 518 SAISDLFVET--GQTILTDVLDKG--PNPFIANMHLKRSVFCSELPDFACSGTKKIRSDN 573
Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637
IK++T C+ R + N + + T I N D+A RR V+ F +
Sbjct: 574 IKKLT-EPCVIGRPCFSNKIN-NRNHATIIIDTNYKPVFDRIDNALMRRIAVVRFRTHFS 631
Query: 638 NR 639
Sbjct: 632 QP 633
>gi|5830656|emb|CAB54695.1| F5R protein [Variola minor virus]
gi|94483741|gb|ABF22858.1| NTPase [Variola virus]
gi|94484354|gb|ABF23468.1| NTPase [Variola virus]
gi|94485759|gb|ABF24866.1| NTPase [Variola virus]
gi|94487379|gb|ABF26478.1| NTPase [Variola virus]
gi|94487988|gb|ABF27084.1| NTPase [Variola virus]
gi|94489998|gb|ABF29084.1| NTPase [Variola virus]
Length = 785
Score = 102 bits (253), Expect = 3e-19, Method: Composition-based stats.
Identities = 54/242 (22%), Positives = 92/242 (38%), Gaps = 24/242 (9%)
Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVEG---EPSQEF 469
+ S D+ L ++G+LDL G K+ T STG F + E S E
Sbjct: 399 MLVDSVETDTYPDKLPFKNGVLDLVDGMFYSGDDAKKYTCTVSTGFKFDDTKFVEDSPEM 458
Query: 470 LDLVSGY-------FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIK 522
+L++ E+++ + + + + L G K G +GKST L+K
Sbjct: 459 EELINIINDIQPLTDENKKNRELYEKTLSSCLCGATKG-CLTFFFGETATGKSTTKRLLK 517
Query: 523 YAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN-----DEINAAK 577
A + +V I+ + + NP + + R V SE + +I +
Sbjct: 518 SAISDLFVET--GQTILTDVLDKG--PNPFIANMHLKRSVFCSELPDFACSGTKKIRSDN 573
Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637
IK++T C+ R + N + + T I N D+A RR V+ F +
Sbjct: 574 IKKLT-EPCVIGRPCFSNKIN-NRNHATIIIDTNYKPVFDRIDNALMRRIAVVRFRTHFS 631
Query: 638 NR 639
Sbjct: 632 QP 633
>gi|9627616|ref|NP_042139.1| hypothetical protein VARVgp095 [Variola virus]
gi|418200|sp|P33069|VD05_VAR67 RecName: Full=Protein D5
gi|62371|emb|CAA47594.1| ATP /GTP binding protein [Variola virus]
gi|297275|emb|CAA49036.1| F5R [Variola virus]
gi|439013|gb|AAA60843.1| homolog of vaccinia virus CDS D5R; putative [Variola major virus]
gi|94483946|gb|ABF23062.1| NTPase [Variola virus]
gi|94484149|gb|ABF23264.1| NTPase [Variola virus]
gi|94484558|gb|ABF23671.1| NTPase [Variola virus]
gi|94484756|gb|ABF23868.1| NTPase [Variola virus]
gi|94484954|gb|ABF24065.1| NTPase [Variola virus]
gi|94485152|gb|ABF24262.1| NTPase [Variola virus]
gi|94485962|gb|ABF25068.1| NTPase [Variola virus]
gi|94486163|gb|ABF25268.1| NTPase [Variola virus]
gi|94486366|gb|ABF25470.1| NTPase [Variola virus]
gi|94486569|gb|ABF25672.1| NTPase [Variola virus]
gi|94486771|gb|ABF25873.1| NTPase [Variola virus]
gi|94486974|gb|ABF26075.1| NTPase [Variola virus]
gi|94487177|gb|ABF26277.1| NTPase [Variola virus]
gi|94487583|gb|ABF26681.1| NTPase [Variola virus]
gi|94487784|gb|ABF26881.1| NTPase [Variola virus]
gi|94488591|gb|ABF27684.1| NTPase [Variola virus]
gi|94488792|gb|ABF27884.1| NTPase [Variola virus]
gi|94488993|gb|ABF28084.1| NTPase [Variola virus]
gi|94489192|gb|ABF28282.1| NTPase [Variola virus]
gi|94489392|gb|ABF28481.1| NTPase [Variola virus]
gi|94489594|gb|ABF28682.1| NTPase [Variola virus]
gi|94489794|gb|ABF28881.1| NTPase [Variola virus]
gi|94490203|gb|ABF29288.1| NTPase [Variola virus]
gi|109724138|gb|ABG43264.1| NTPase [Variola virus]
gi|109724342|gb|ABG43467.1| NTPase [Variola virus]
gi|109724544|gb|ABG43668.1| NTPase [Variola virus]
gi|109724749|gb|ABG43872.1| NTPase [Variola virus]
gi|109725156|gb|ABG44277.1| NTPase [Variola virus]
gi|109725361|gb|ABG44481.1| NTPase [Variola virus]
gi|109725564|gb|ABG44683.1| NTPase [Variola virus]
gi|109725768|gb|ABG44886.1| NTPase [Variola virus]
gi|109725971|gb|ABG45088.1| NTPase [Variola virus]
gi|109726378|gb|ABG45493.1| NTPase [Variola virus]
gi|109726581|gb|ABG45695.1| NTPase [Variola virus]
gi|745214|prf||2015436DG F5R gene
Length = 785
Score = 102 bits (253), Expect = 3e-19, Method: Composition-based stats.
Identities = 54/242 (22%), Positives = 92/242 (38%), Gaps = 24/242 (9%)
Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVEG---EPSQEF 469
+ S D+ L ++G+LDL G K+ T STG F + E S E
Sbjct: 399 MLVDSVETDTYPDKLPFKNGVLDLVDGMFYSGDDAKKYTCTVSTGFKFDDTKFVEDSPEM 458
Query: 470 LDLVSGY-------FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIK 522
+L++ E+++ + + + + L G K G +GKST L+K
Sbjct: 459 EELINIINDIQPLTDENKKNRELYEKTLSSCLCGATKG-CLTFFFGETATGKSTTKRLLK 517
Query: 523 YAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN-----DEINAAK 577
A + +V I+ + + NP + + R V SE + +I +
Sbjct: 518 SAISDLFVET--GQTILTDVLDKG--PNPFIANMHLKRSVFCSELPDFACSGTKKIRSDN 573
Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637
IK++T C+ R + N + + T I N D+A RR V+ F +
Sbjct: 574 IKKLT-EPCVIGRPCFSNKIN-NRNHATIIIDTNYKPVFDRIDNALMRRIAVVRFRTHFS 631
Query: 638 NR 639
Sbjct: 632 QP 633
>gi|307578050|gb|ADN53668.1| primase-like protein [Staphylococcus aureus]
Length = 750
Score = 101 bits (252), Expect = 4e-19, Method: Composition-based stats.
Identities = 49/350 (14%), Positives = 115/350 (32%), Gaps = 24/350 (6%)
Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEV-M 483
++ ++ ++G++ T T ++++ T + + + + E +
Sbjct: 407 NNEYVAVKNGLVHYHTKIFRTFTPDIFVIDKLPTAYNPNAYDEFVDTTIQKVSCNHETTI 466
Query: 484 DYFTRCVGMALLGGNKAQRFIHIRGV-GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542
L + I++ G +GKST+ ++IK F + I++ + + N
Sbjct: 467 MNIYEMFAQVLYPKILIDKIIYLLGTVADNGKSTVQHMIKATFDSGGRISSVSPQRLANN 526
Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602
+ G ++ + + +A IK G + + S+S
Sbjct: 527 HFAGSS-------IYGKMANMVDDLPNVEIEDAGNIKTAITGGYLEIEQKGKD--SQSVR 577
Query: 603 SFTPFIV-PNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASF-----AQKLETKYTLE-A 655
TPFI+ N + + + +R +IPF+ + K+ K E
Sbjct: 578 MQTPFIIASNHYPKFKESGEQINKRLHIIPFNYSFKDDQERLSVTESTNKIYNKSAKEYV 637
Query: 656 KKWFLK-GVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
K + G + E K+ E + ++++ +I L
Sbjct: 638 LKLAIDTLADMLQRDGSYITPNERSDKSAELFSDNNNPLSEYLENR-NIDFFLNNPGAET 696
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKR 764
K Y + + RK ++ L+ + + ++ + R
Sbjct: 697 YKDYKVWCHSN--FIRKPVNKDDFITLLEN--YYDIEWKRSVKYTENNVR 742
>gi|325109860|ref|YP_004270928.1| Bifunctional DNA primase/polymerase [Planctomyces brasiliensis DSM
5305]
gi|324970128|gb|ADY60906.1| Bifunctional DNA primase/polymerase [Planctomyces brasiliensis DSM
5305]
Length = 660
Score = 101 bits (252), Expect = 4e-19, Method: Composition-based stats.
Identities = 51/277 (18%), Positives = 80/277 (28%), Gaps = 33/277 (11%)
Query: 8 EQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYA 67
A Q NGF++ P K P ++ E+I++ G+ L
Sbjct: 18 SAAVQYAENGFRVFPCVPNGKSPATKNGCKDATDDVEQIEQWWTQTPDANIGIATDGLVV 77
Query: 68 FDID------SKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTES 121
DID D + P+ + + +
Sbjct: 78 VDIDGADHPWLTDPDRMAELAKNAMAV----------TPRGGRHLYFAQGDEEIGCSVSK 127
Query: 122 TQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEIT 181
+DI G Y VA KEY W+ + + E I+
Sbjct: 128 LADKVDIRANGGYVVAPP-STVNGKEYRWSNSFELGGRSELSAVPE-----------SIS 175
Query: 182 VPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETR 241
PL + K + +T LS E + + D+W+ V MA+H
Sbjct: 176 GPLRRPKNDQQQPVQQDGIFSIAEKAEALT-ILSRLPLECCD-NRDDWLRVGMALHSV-- 231
Query: 242 GSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIG 278
S + WSK + + W FD E G
Sbjct: 232 -SPQLLPDWVIWSKLSAKFQPGVCERSWRGFDRERAG 267
>gi|9629026|ref|NP_044045.1| MC094R [Molluscum contagiosum virus subtype 1]
gi|1492037|gb|AAC55222.1| MC094R [Molluscum contagiosum virus subtype 1]
Length = 791
Score = 100 bits (250), Expect = 7e-19, Method: Composition-based stats.
Identities = 59/290 (20%), Positives = 98/290 (33%), Gaps = 47/290 (16%)
Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKV--KPTKELYITKSTGTPFVEGEPSQEFLD- 471
+ + D L DG+LD+ G K+ T STG +++ L
Sbjct: 401 MLVDAVETDVFPEKLPFADGVLDIADGSFHTGADAKDFMCTVSTGYRLERDARARDALAP 460
Query: 472 ---LVSGYFES--------EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNL 520
+ + E + + + L G K F G +GKST L
Sbjct: 461 ARAELERVLDDIQPRSPGNAENRALYEKVLASCLCGATKPCIFFF-FGETATGKSTTKKL 519
Query: 521 I-KYAFGNQY-VINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEND-----EI 573
+ G +D+M NP L + R V SE + +I
Sbjct: 520 LQSALHGLFLETGQTILTDLMDK------GPNPFLANMHLKRAVFCSELPDFSCSGAKKI 573
Query: 574 NAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFD 633
A +K++T C+ R Y N + + T I N D+A RR ++ F
Sbjct: 574 RADNVKRLT-EPCLVGRPCYSNRIN-NRNHATIIIDTNYRPVFDKVDNALMRRVGLVRFR 631
Query: 634 KPIANR--------------DASFAQKLETKYTLEAKKWFLKGVKAYISK 669
+NR DA+ +K+++ Y A FL+ + + +
Sbjct: 632 THFSNRGAPASRLYDTVKPLDAALDRKIQSHYFRFA---FLELLLEWYQR 678
>gi|315121956|ref|YP_004062445.1| P4 family phage/plasmid primase [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|315122924|ref|YP_004063413.1| P4 family phage/plasmid primase [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495358|gb|ADR51957.1| P4 family phage/plasmid primase [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313496326|gb|ADR52925.1| P4 family phage/plasmid primase [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 68
Score = 100 bits (249), Expect = 8e-19, Method: Composition-based stats.
Identities = 56/68 (82%), Positives = 60/68 (88%)
Query: 1 MPVMQWKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGV 60
M VMQWK QAKQAI NGFK+IPLR GDKRP R GKWEEQLLS+E IDKLP+CGFG VCGV
Sbjct: 1 MSVMQWKPQAKQAIKNGFKIIPLRHGDKRPLRAGKWEEQLLSNEDIDKLPSCGFGLVCGV 60
Query: 61 GEQPLYAF 68
GEQP+YAF
Sbjct: 61 GEQPIYAF 68
>gi|331028101|ref|YP_004421815.1| integrase [Roseobacter phage RDJL Phi 1]
gi|301341564|gb|ADK73448.1| integrase [Roseobacter phage RDJL Phi 1]
Length = 802
Score = 100 bits (249), Expect = 9e-19, Method: Composition-based stats.
Identities = 100/659 (15%), Positives = 191/659 (28%), Gaps = 104/659 (15%)
Query: 9 QAKQAIHNGFKLIPLRL--------GDKR-----PQRLGKWEEQLLSSEKIDKLP-ACGF 54
Q K + G +LIPL G KR P + S ++D +
Sbjct: 9 QLKPYLAAGMQLIPLHHHTDEDEYKGKKRNRGKSPVDKNWMKRTYKSDLQVDYMEEGYNV 68
Query: 55 GFVCGVGEQPLYAFDID----------SKDEKTANTFKDTFEILHGTPIVRIGQKPKILI 104
G G G+ DID + D KD + P V G L
Sbjct: 69 GVRLGAGD---LVLDIDPRGFPEGETLATDNPFKRLCKDVGLNVDEFPRVETGSG--GLH 123
Query: 105 PFRMNKEGIKKKKTTESTQGHLDILGCGQYFV-AYNIHPKTKKEYTWTTPPHRFKVEDTP 163
+ E + + + ++ G+ V A +IHP TK Y+W
Sbjct: 124 IYMSKPEDVSTRDSLNDQYPGVEFKSFGRQVVSAGSIHPDTKLPYSW------------- 170
Query: 164 LLSEEDVEYLFKFFQEITVPLVKD--KKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEF 221
++L+ E+ P I ++ E+ L E
Sbjct: 171 -------DFLYPELDELGTPSAPKLLIDLIRRPTGSAATGGGEHDQEELAEMLDQLDPED 223
Query: 222 YNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDE--ENFNYKWDTFDFEEIGD 279
++ HD W+ ++ A HH T G + + I W + Y + +WD+ + G
Sbjct: 224 FS-DHDSWLTLMQACHHATAGDGRQEFI--EWCTRDPEYSDHGTIIGLRWDSLHADADGA 280
Query: 280 TAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKN 339
R T+ +L L+ R A + + +T
Sbjct: 281 ----RVTYRTLHKFMRDKGAGELIP-RTPAADDFDDLDPDDVPDEAFDEETPE-----HE 330
Query: 340 NVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEEN 399
D+ A + + +V D + K +PR + + +
Sbjct: 331 KKGPLEKMNDRYCAVMDGGKFRVMWEVLD---PDSGDAKEGIAPRKCWVSATKFDFQSFL 387
Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKEL-----YITK 454
+ + Q + + ++ +G++ P ++ T
Sbjct: 388 ANRR--VQQGDRAVPIAEAWQEWGGRRQY----NGVI-------FDPERDHKGFLNLWTG 434
Query: 455 STGTPFVEGEPSQEFLDLVSGYF--ESEEVMDYFTRCVGMALL-GGNKAQRFIHIRGVGG 511
TP + + +L+S E V +Y + G+ A+ I +G G
Sbjct: 435 WAVTPAKKDDGWSYLNELLSDVLCDGDEAVYEYVMNWAAYMIQHPGSPAEVAICFQGGKG 494
Query: 512 SGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISET-NEN 570
GK T + G + + + L + E
Sbjct: 495 VGKGTWFRTLAQLAGRHGMQITSSEHLTGRFND----------HLRDCIFLFADEAIKAY 544
Query: 571 DEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIV 629
D+ +++K + + + + N+ F+ + RR+++
Sbjct: 545 DKDGESRLKGLITEPTLVYEGKGKDAKRGKNRLHVG-MASNEDWFIPMGLEG-ERRFLL 601
>gi|183596366|ref|ZP_02958394.1| hypothetical protein PROSTU_00112 [Providencia stuartii ATCC 25827]
gi|188023827|gb|EDU61867.1| hypothetical protein PROSTU_00112 [Providencia stuartii ATCC 25827]
Length = 126
Score = 100 bits (249), Expect = 1e-18, Method: Composition-based stats.
Identities = 22/120 (18%), Positives = 51/120 (42%), Gaps = 12/120 (10%)
Query: 652 TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEES 711
W L GV+A+ ++G +P + A +E RQ +D ++ + C + + + +
Sbjct: 1 MQGILNWALAGVQAWHTEGFKRSLPAAVIAANDEYRQESDLIGEFL-EGCRLEPDAYTAA 59
Query: 712 HSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771
L ++ + + + R++ R T + ++GF + +K +G+ L
Sbjct: 60 SDLYSAFLSFASEGNEW---RMTQRIFTKKMVERGF--------KKIRRNNKASFRGIAL 108
>gi|170751665|ref|YP_001757925.1| hypothetical protein Mrad2831_5295 [Methylobacterium radiotolerans
JCM 2831]
gi|170658187|gb|ACB27242.1| hypothetical protein Mrad2831_5295 [Methylobacterium radiotolerans
JCM 2831]
Length = 1349
Score = 100 bits (249), Expect = 1e-18, Method: Composition-based stats.
Identities = 35/208 (16%), Positives = 68/208 (32%), Gaps = 30/208 (14%)
Query: 5 QWKEQAKQAIHNGFKLIPLRLGDKR-------PQRLGK---W---EEQLLSSEKIDKLPA 51
++ A + NG+ L P +R P R K W +E+L +++++
Sbjct: 70 RFSAVAPACVANGWSLFPQARSGRRGPILVKQPGRSSKALQWKPLQERLPTADELSWWAE 129
Query: 52 -------CGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTP-IVRIGQKPKIL 103
+ G DID D A + G R+G+ P+++
Sbjct: 130 SDGPRNRANVALIMGEVSGRALCLDIDVSDPTLAQAILALVDRHLGRTEFRRVGRAPRLV 189
Query: 104 IPFRMN-------KEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTP--P 154
+ +R + K K +++L + + H KT + W P
Sbjct: 190 LIYRSDVSDPVRNKTYALDAKDDGGNDQAIEVLADRKPVTGFGAHHKTGAHFQWVGACRP 249
Query: 155 HRFKVEDTPLLSEEDVEYLFKFFQEITV 182
E P++++ VE +
Sbjct: 250 DTHGPEHAPVITQAQVEDFISAVDAAGI 277
>gi|329313511|gb|AEB87924.1| DNA primase [Staphylococcus aureus subsp. aureus T0131]
Length = 750
Score = 100 bits (248), Expect = 1e-18, Method: Composition-based stats.
Identities = 45/349 (12%), Positives = 108/349 (30%), Gaps = 22/349 (6%)
Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEV-M 483
++ ++ ++G++ T T ++++ T + + + + E +
Sbjct: 407 NNEYVAVKNGLVHYHTKIFRTFTPDIFVIDKLPTAYNPNAYDEFVDTTIQKVSCNHETTI 466
Query: 484 DYFTRCVGMALLGGNKAQRFIHIRGV-GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542
L + I++ G +GKST+ ++IK F + I++ + + N
Sbjct: 467 MNIYEMFAQVLYPKILIDKIIYLLGTVADNGKSTVQHMIKATFDSGGRISSVSPQRLANN 526
Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602
+ G ++ + + +A IK G + G
Sbjct: 527 HFAGSS-------IYGKMANMVDDLPNIEIEDAGNIKTAITGGYLEIEQK-GKASQSVRM 578
Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASF-----AQKLETKYTLE-AK 656
I N + + + +R +IPF+ + K+ K E
Sbjct: 579 QTPFIIASNHYPKFKESGEQINKRLHIIPFNYSFKDDQERLSVTESTNKIYNKSAKEYVL 638
Query: 657 KWFLK-GVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLA 715
K + G + E K+ E + ++++ +I L
Sbjct: 639 KLAIDTLADMLQRDGSYITPNERSDKSAELFSDNNNPLSEYLENR-NIDFFLNNPGAETY 697
Query: 716 KSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKR 764
K Y + + RK ++ L+ + + ++ + R
Sbjct: 698 KDYKVWCHSN--FIRKPVNKDDFITLLEN--YYDIEWKRSVKYTENNVR 742
>gi|9632024|ref|NP_048813.1| hypothetical protein PBCV1_A456L [Paramecium bursaria Chlorella
virus 1]
gi|1620128|gb|AAC96824.1| contains ATP/GTP-binding site motif A [Paramecium bursaria
Chlorella virus 1]
Length = 654
Score = 100 bits (248), Expect = 1e-18, Method: Composition-based stats.
Identities = 55/305 (18%), Positives = 109/305 (35%), Gaps = 23/305 (7%)
Query: 480 EEVMDYFTRCVGMALLGGN---KAQRFIHIRGVGGSGKSTL-MNLIKYAFGNQYVINAEA 535
EEV + +G L N Q +G+ +GKST+ + +IK F
Sbjct: 355 EEVQRWLFALLGRILYPVNQVDSWQVIPFFKGLAATGKSTIILKVIKNFF---------- 404
Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595
+ + + V+ E + I A+ + M G+ + + +
Sbjct: 405 ETVDVGILSNNVERKFGISAFHDKYCVLAPEIKSDLAIEQAEFQSMVSGEDVQVNVKHKK 464
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
++E S + N+ + + RR +V F KP+ N D +KL K
Sbjct: 465 AFAEE-WSVPMALAGNEVPGWADNGGSIQRRMVVFEFKKPVRNGDMKLGEKL-DKELPYI 522
Query: 656 KKWFLKGVK----AYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD-CCDIGENLWEE 710
+ K Y + +PE + +E + T+ ++++ +GEN
Sbjct: 523 LRKCNKAYLDLAGKYSDVNIWSVLPEYFINTREALARATNFIESFMASGDVILGENEICP 582
Query: 711 SHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGF-IGGIKREKIEKEWKSKRIIKGL 769
+ E+ + + K+++ T ++ G G + + + + I+GL
Sbjct: 583 FGDFKSALREHATMNVMHT-KQLTADVFTGPFEKYGIKYLGTQTLEYCGQSVNTEFIQGL 641
Query: 770 KLKPA 774
LK A
Sbjct: 642 SLKSA 646
>gi|41057504|ref|NP_957977.1| ORF068 NTPase [Bovine papular stomatitis virus]
gi|41018820|gb|AAR98425.1| ORF068 NTPase [Bovine papular stomatitis virus]
Length = 788
Score = 100 bits (248), Expect = 1e-18, Method: Composition-based stats.
Identities = 67/378 (17%), Positives = 117/378 (30%), Gaps = 60/378 (15%)
Query: 346 LTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKST 405
+ D + + + + + S E K R DY + + +
Sbjct: 335 IASDVVKLTERGDYIVWLNNSWRFSSEESLITKLVLDVRHSLPADYANEMLCPRKRKVVE 394
Query: 406 AQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTK--ELYITKSTGT----- 458
+ + D L +G+LDL TG+ + + E T STG
Sbjct: 395 TNIRD----MLVDVSETDVLYDKLPFTNGVLDLATGEFLTGDRAKECVCTVSTGYRFSRE 450
Query: 459 PFVEGEPSQEFLDLVSGYF-------ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGG 511
+ S+ LVS E+ E + R + AL G K + G
Sbjct: 451 EYEAAADSEAMRRLVSVIDDIQPNTPENAENRALYERAMSSALCGATKT-VIVFFFGDTM 509
Query: 512 SGKSTLMNLIKYAFGNQY--VINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569
+GKST L+ Y +D++ NP + + R V SE +
Sbjct: 510 TGKSTSKRLLHSVLSGLYIETGQTVLTDVLDK------GPNPFVANMHLRRAVFCSELPD 563
Query: 570 N-----DEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWW 624
++ + K++T C+ R + N + T I N D+A
Sbjct: 564 FACNNARKLRSDNFKKLT-EPCIVGRPCFSNKIH-NRNHATFIIDTNYRPVFDRVDNALM 621
Query: 625 RRYIVIPFDKPI------------------ANRDASFAQKLETKYTL-EAKKWFLKGVKA 665
RR ++ F + D S K++ Y + ++ +
Sbjct: 622 RRVALVRFRTHFSSAATRAAAVHNIEYSAVKDMDDSLDAKIQRNYFRYAFLRLLVEWFRK 681
Query: 666 YISKGLDVDIPEVCLKAK 683
Y +P+V L A
Sbjct: 682 YH-------VPQVSLDAT 692
>gi|282917366|ref|ZP_06325120.1| DNA primase [Staphylococcus aureus subsp. aureus D139]
gi|282318718|gb|EFB49074.1| DNA primase [Staphylococcus aureus subsp. aureus D139]
Length = 750
Score = 99.4 bits (246), Expect = 2e-18, Method: Composition-based stats.
Identities = 46/349 (13%), Positives = 109/349 (31%), Gaps = 22/349 (6%)
Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEV-M 483
++ ++ ++G++ T T ++++ T + + + + E +
Sbjct: 407 NNEYVAVKNGLVHYHTKIFRTFTPDIFVIDKLSTAYNPNAYDEFVDTTIQKVSCNHETTI 466
Query: 484 DYFTRCVGMALLGGNKAQRFIHIRGV-GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542
L + I++ G +GKST+ ++IK F + I++ + + N
Sbjct: 467 MNIYEMFAQVLYPKILIDKIIYLLGTVADNGKSTVQHMIKATFDSGGRISSVSPQRLANN 526
Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602
+ G ++ + + +A IK G + G
Sbjct: 527 HFAGSS-------IYGKMANMVDDLPNIEIEDAGNIKTAITGGYLEIEQK-GKASQSVRM 578
Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASF-----AQKLETKYTLE-AK 656
I N + + + +R +IPF+ + A K+ K E
Sbjct: 579 QTPFIIASNHYPKFKESGEQINKRLHIIPFNYSFKDDQERLSVTESANKIYNKSAKEYVL 638
Query: 657 KWFLK-GVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLA 715
K + G + E K+ E + ++++ +I L
Sbjct: 639 KLAIDTLADMLQRDGSYITPNERSDKSAELFSDNNNPLSEYLENR-NIDFFLNNPGAETY 697
Query: 716 KSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKR 764
K Y + + RK ++ L+ + + ++ + R
Sbjct: 698 KDYKVWCHSN--FIRKPVNKDDFITLLEN--YYDIEWKRSVKYTENNVR 742
>gi|254366071|ref|ZP_04982116.1| possible phiRv1 phage protein [Mycobacterium tuberculosis str.
Haarlem]
gi|134151584|gb|EBA43629.1| possible phiRv1 phage protein [Mycobacterium tuberculosis str.
Haarlem]
Length = 240
Score = 99.4 bits (246), Expect = 2e-18, Method: Composition-based stats.
Identities = 30/185 (16%), Positives = 52/185 (28%), Gaps = 29/185 (15%)
Query: 303 LASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSM 362
+A R ++ Y + + G ++ D + W D+ + A + L
Sbjct: 40 IAYRLAERYQDKLL--HVAGIGWHSWDGRRWAADDRGEAKR------AVLAELRQALSDS 91
Query: 363 KEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLL 422
D ++ + E S A F+ T L
Sbjct: 92 LNDKELRADV---------------------RKCESASGVAGVLDLAAALVPFAATVADL 130
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEV 482
DS L +G LDL T + ITK + S + ++ E V
Sbjct: 131 DSDPHLLNVANGTLDLHTLKLRPHAPADRITKICRGAYQSDTESPLWQAFLTRVLPDEGV 190
Query: 483 MDYFT 487
+
Sbjct: 191 RGFLQ 195
>gi|254432090|ref|ZP_05045793.1| Pas55 [Cyanobium sp. PCC 7001]
gi|197626543|gb|EDY39102.1| Pas55 [Cyanobium sp. PCC 7001]
Length = 1757
Score = 99.0 bits (245), Expect = 3e-18, Method: Composition-based stats.
Identities = 68/489 (13%), Positives = 139/489 (28%), Gaps = 65/489 (13%)
Query: 327 TADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFW 386
D + + D Y + +LD+ + + L L E P+D K + RF
Sbjct: 310 AWDGGCFRRYDHALGYWRAWSLDEARTAALGVLS-------LLCEPPKDPTKGAPRFRFG 362
Query: 387 FNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP 446
+ + V + + + +G +L T +
Sbjct: 363 TDRQVQ-GAVSLLAGLAGRGPLQDVPPPVVV-------------FGNGTFNLRTRRLEPH 408
Query: 447 TKELYITKSTGTPFVEGEPSQEFLDLVSGYF---ESEEVMDYFTRCVGMALLGGNKAQRF 503
+ E T + ++ G L V +E ++ R + + +
Sbjct: 409 SPEHGATYAVDADYLPGAGCPAALQRVIETCYPEGAEPIIRAELRWL---IDPSVRYGEV 465
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIR-LMGSRIV 562
H G G+GK L+ + S P + L + + G R++
Sbjct: 466 FHHLGDTGTGKGLLVEFLSSLL--------PPSLQATAAHPASLDTPEKLHQIVRGRRLL 517
Query: 563 IISETNENDEINA--AKIKQMTGGDCMTARLNYGNTYSE-SPASFTPFIVPNKHLFVRNP 619
+ + ++ TAR Y E P + I L +
Sbjct: 518 QFPDCPARLRNSGHSGLFYELVENKPQTARRLYSAEAEEARPFNVRCIIASVAPLQFSDG 577
Query: 620 DDAWWRRYIVIPFDKPIANRDASFAQKLETKYT------LEAKKWFLKGVKAYISKGLDV 673
D + RR + + + + D L +A W + + L
Sbjct: 578 RDGFLRRCLTLQTLQRSGDPDPMLRSDLIGSTPEHRVIRSQAVSWAMSMPTFELEAILSK 637
Query: 674 DIPEVCLKA-KEEERQGTDTYQAWIDDCCD---IGENLWEESHSL---AKSYSEYREQEL 726
+ PE L+ + E D+ + D C +G + + L ++Y + +
Sbjct: 638 NDPEGLLRLGEAEAAAAGDSVSQFADACLVPHPLGPDAEVDEADLGQMFEAYRGWCKYAG 697
Query: 727 NYDRKRIST------------RTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPA 774
++S R + + + R +++ R G L+
Sbjct: 698 VEHAMQLSNFRGQLRRVLGPGRCLPRRKESREEAKAQGRPPSQRQ-NLPRFDAGFALRHG 756
Query: 775 FESVDDNSN 783
+ S
Sbjct: 757 LLRPSNGSG 765
>gi|218442838|ref|YP_002381158.1| DNA primase [Cyanothece sp. PCC 7424]
gi|218175196|gb|ACK73928.1| DNA primase catalytic core domain protein [Cyanothece sp. PCC 7424]
Length = 1117
Score = 98.3 bits (243), Expect = 4e-18, Method: Composition-based stats.
Identities = 83/528 (15%), Positives = 161/528 (30%), Gaps = 78/528 (14%)
Query: 304 ASRFSDAYNKAMFSIYKKGHF---LYT--ADTKAWYKKDKNNVYIWSLTLDKITASIMNF 358
A SD+ S + +Y K W + +Y W
Sbjct: 464 AQTLSDSSADIPDSFSPNSEYTQQVYNVLYRDKRW-ICVEGKLYYWET------------ 510
Query: 359 LVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSIT 418
+ E D+ E+ + + P+ + + + N + F I
Sbjct: 511 --NHYEHSKDVVEKKRIRDFLNTLPKKNKDGEITYPFAKPNCVNNALEWLKM---GFGID 565
Query: 419 SDLLDSSSRFLGEQDGILDLE------TGQKVKPTKELYITKSTGTPFVEGEPSQEFLDL 472
+L+ + L +G+L + T + V E Y + P + L
Sbjct: 566 PELV--NPPGLNCTNGVLKIHWIESTPTWELVPHNPEQYYLYEPVLTYDPDAPQTDCDRL 623
Query: 473 VSGYFESEEVMDYFTRCVGMALLGGNKAQ------RFIHIRGVGGSGKSTLMNLIKYAFG 526
+S ++ + F R V +L + R + ++G+G +GK ++ +++ +G
Sbjct: 624 LSALDPAQLTI--FLRSVAASLDIQTVRKYKGRLVRALLMKGLGSNGKDSIREVVRLMYG 681
Query: 527 NQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA-AKIKQMTGGD 585
I + R + G+ P L +L SR+ SE +I++ +K GD
Sbjct: 682 ---GIGMTGCTLSDFRQYDEGRKFP-LSKLGRSRVNWASENASFAKIDSLQSLKAAITGD 737
Query: 586 CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA-------- 637
++ + P + F N + +A RY V+ F+K
Sbjct: 738 PLSVENKGKDENEYDP-TAVLFFNCNDIPRLTGSMEAIASRYAVLTFNKTFTIDADPSKG 796
Query: 638 --NRDASF---AQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDT 692
D F L+T L + +S G+D C +A E +
Sbjct: 797 EIEADPRFKYDPDFLKTHVLSAFLNRVLSELVNLMSDGIDYR---ACDRAWNEIKAENSH 853
Query: 693 YQAWIDDC-CDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV------------- 738
+ D E + K + + ST +
Sbjct: 854 LFQFTQDVGLSYLEGKEMPVGDIWKLLEGWYQDNGYLSYIESSTGKLKADWTDSPIRGDR 913
Query: 739 ---TLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDNSN 783
N + + K + R+I+G+ + P+ + N
Sbjct: 914 LVKGANQVTARILELFPKAKRVVLANNSRVIRGIGIVPSGNGDEGGHN 961
>gi|289183832|ref|YP_003457373.1| NTPase [Pseudocowpox virus]
gi|288804304|gb|ADC53969.1| NTPase [Pseudocowpox virus]
Length = 787
Score = 98.3 bits (243), Expect = 5e-18, Method: Composition-based stats.
Identities = 58/307 (18%), Positives = 99/307 (32%), Gaps = 34/307 (11%)
Query: 351 ITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLE 410
+ + N + + + S E K R DY + + +
Sbjct: 339 VKLTERNDYIVWLNNSWRFSAEESLITKLILDVRHSLPADYANDMLCPRKRKVVETNIRD 398
Query: 411 AGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKEL--YITKSTGT-----PFVEG 463
+ D+ L +G+LDL TG+ + + T STG +
Sbjct: 399 ----MLVEISETDTQYDKLPFTNGVLDLATGEFLTGDRAKACVCTVSTGYRFSREEYEAA 454
Query: 464 EPSQEFLDLVSGYF-------ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKST 516
S+ LVS E+ E + R + AL G K + G +GKST
Sbjct: 455 ADSEAMRRLVSVIDDIQPDTPENAENRALYERAMSSALCGNTKT-VIVFFYGETMTGKST 513
Query: 517 LMNLIKYAFGNQY--VINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN---- 570
L+ A G + +D++ NP + + R V SE +
Sbjct: 514 SKRLLMSALGGLFIETGQTVLTDVLDK------GPNPFVANMHLRRAVFCSELPDFACSN 567
Query: 571 -DEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIV 629
++ + K++T C+ R + N + T I N D+A RR +
Sbjct: 568 ARKLRSDNFKKLT-EPCIVGRPCFSNKIH-NRNHATFIIDTNYRPVFDRVDNALMRRVAL 625
Query: 630 IPFDKPI 636
+ F
Sbjct: 626 VRFRTHF 632
>gi|288804172|gb|ADC53838.1| NTPase [Pseudocowpox virus]
Length = 787
Score = 98.3 bits (243), Expect = 5e-18, Method: Composition-based stats.
Identities = 58/307 (18%), Positives = 99/307 (32%), Gaps = 34/307 (11%)
Query: 351 ITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLE 410
+ + N + + + S E K R DY + + +
Sbjct: 339 VKLTERNDYIVWLNNSWRFSAEESLITKLILDVRHSLPADYANDMLCPRKRKVVETNIRD 398
Query: 411 AGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKEL--YITKSTGT-----PFVEG 463
+ D+ L +G+LDL TG+ + + T STG +
Sbjct: 399 ----MLVEISETDTQYDKLPFTNGVLDLATGEFLTGDRAKACVCTVSTGYAFSREEYEAA 454
Query: 464 EPSQEFLDLVSGYF-------ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKST 516
S+ LVS E+ E + R + AL G K + G +GKST
Sbjct: 455 ADSEAMRRLVSVIDDIQPDTPENAENRALYERAMSSALCGNTKT-VIVFFYGETMTGKST 513
Query: 517 LMNLIKYAFGNQY--VINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN---- 570
L+ A G + +D++ NP + + R V SE +
Sbjct: 514 SKRLLMSALGGLFIETGQTVLTDVLDK------GPNPFVANMHLRRAVFCSELPDFACSN 567
Query: 571 -DEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIV 629
++ + K++T C+ R + N + T I N D+A RR +
Sbjct: 568 ARKLRSDNFKKLT-EPCIVGRPCFSNKIH-NRNHATFIIDTNYRPVFDRVDNALMRRVAL 625
Query: 630 IPFDKPI 636
+ F
Sbjct: 626 VRFRTHF 632
>gi|115531777|ref|YP_784303.1| NTPase [Crocodilepox virus]
gi|115521130|gb|ABJ09004.1| NTPase [Crocodilepox virus]
Length = 781
Score = 97.9 bits (242), Expect = 6e-18, Method: Composition-based stats.
Identities = 61/296 (20%), Positives = 103/296 (34%), Gaps = 43/296 (14%)
Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVEGEPSQEFLDLVS 474
+ +DL L +GILD+ T + + K+ T STG + + +
Sbjct: 403 VATDLF---PEKLQFDNGILDVATREFHRGEEGKDFVCTVSTGYEYAPTPAGDPAVTELR 459
Query: 475 GYFESEEV--------MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFG 526
+ + + F R + L G NK F G SGKST+ L++ F
Sbjct: 460 AVLDDIQPPTGGNAGNREVFERVLSSCLCGVNKPYIFFF-YGDTSSGKSTVKKLLRSVF- 517
Query: 527 NQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEND-----EINAAKIKQM 581
+ +++ P NP + + R+ SE + +I + +K++
Sbjct: 518 DGLFTETSQCILVE---PFDKGPNPYVSSIHLKRVTFCSELPDFSCNNVKKIRSDNVKKL 574
Query: 582 TGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI----- 636
T +C+ R + N S S T I N D+A RR +I F
Sbjct: 575 T-ENCIVGRACFSNKISNCNVS-TIIIDSNYKPVFDKVDNAIMRRIGLIHFKTHFSPNLN 632
Query: 637 -----------ANRDASFAQKLETKYTLEA-KKWFLKGVKAYISKGLDVDI-PEVC 679
+A K+ T Y A L+ + GL ++ PE+
Sbjct: 633 RPCLGNSYDVVKKLNAELESKIRTNYFRGAFLTLLLEWYAKHHLHGLSLEPTPELI 688
>gi|17227468|ref|NP_478650.1| hypothetical protein all9003 [Nostoc sp. PCC 7120]
gi|17134934|dbj|BAB77489.1| all9003 [Nostoc sp. PCC 7120]
Length = 1097
Score = 97.5 bits (241), Expect = 7e-18, Method: Composition-based stats.
Identities = 44/345 (12%), Positives = 106/345 (30%), Gaps = 44/345 (12%)
Query: 425 SSRFLG-----EQDGILDLE-TGQ-----KVKPTKELYI-TKSTGTPFVEGEPSQEFLDL 472
+ L +G+L ++ +G + + + T + S L
Sbjct: 453 DPQLLNPPGVNCTNGVLAIDWSGPIPRPVLEEHDPDKHFFTYEPLVKYDPKADSSHCDRL 512
Query: 473 VSGYFESEEVMDYFTRCVGMAL------LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFG 526
+ ++ + R +G +L + + + G+G +GK ++ ++ +G
Sbjct: 513 LECLDSPQQQI--LLRNLGASLDLAEVRKRKGREPKVLLACGLGANGKDSIRQVVSTIYG 570
Query: 527 NQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEIN-AAKIKQMTGGD 585
+Q + + +D + +L L+ SR+ SE + ++ +K G+
Sbjct: 571 HQGMTSCSLADFVA----YDEGRKFALAALVNSRVNWASENPQTTRLDKIQSLKLFATGN 626
Query: 586 CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA-NRDASFA 644
+ + + + ++ N A R + F K N D +
Sbjct: 627 VLHSERKGKDHIEFN-SNAIGIFNLNDTPSWYGTIQAILDRIAALIFRKTFKTNPDPNNH 685
Query: 645 QKLETKY-------------TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTD 691
+L + G++A I++G+D +A EE +
Sbjct: 686 DELLADPRFAYDVDFVQECVAPAFLNKMIAGLQALIAEGIDYS---CTQQALEEIQAENS 742
Query: 692 TYQAWIDDC-CDIGENLWEESHSLAKSYSEYREQELNYDRKRIST 735
+ D N + + + + + S
Sbjct: 743 HLFQFCKDTGLGYKANGIVTAFDIWQRLENWYIDNGTLSFEESSN 787
>gi|325073819|gb|ADY76872.1| PP212 [Orf virus]
Length = 787
Score = 96.7 bits (239), Expect = 1e-17, Method: Composition-based stats.
Identities = 56/307 (18%), Positives = 97/307 (31%), Gaps = 34/307 (11%)
Query: 351 ITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLE 410
+ + N + + + S E K R DY + + +
Sbjct: 339 VKLTERNDYIVWLNNSWRFSAEESLITKLILDVRHSLPADYANDMLCPRKRKVVETNIRD 398
Query: 411 AGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKEL--YITKSTGTPFVE----GE 464
+ D+ L +G+LDL TG+ + + T STG F
Sbjct: 399 ----MLVDISETDTQYDKLPFTNGVLDLATGEFLTGDRAKACVCTVSTGYAFSREEFAAA 454
Query: 465 PSQEFLDLVSGYFES--------EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKST 516
E + + G + E + R + AL G K + G +GKST
Sbjct: 455 ADSEAMRRLVGVIDDIQPDTPENAENRALYERAMSSALCGATKT-VIVFFYGDTMTGKST 513
Query: 517 LMNLIKYAFGNQY--VINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN---- 570
L+ A G + +D++ NP + + R V SE +
Sbjct: 514 SKRLLMSALGGLFIETGQTVLTDVLDK------GPNPFVANMHLRRAVFCSELPDFACNN 567
Query: 571 -DEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIV 629
++ + K++T C+ R + N + T I N D+A RR +
Sbjct: 568 ARKLRSDNFKKLT-EPCIVGRPCFSNKIH-NRNHATFIIDTNYRPVFDRVDNALMRRVAL 625
Query: 630 IPFDKPI 636
+ F
Sbjct: 626 VRFRTHF 632
>gi|30230665|gb|AAP21119.1| D5R-like protein [Orf virus]
Length = 781
Score = 96.7 bits (239), Expect = 1e-17, Method: Composition-based stats.
Identities = 56/307 (18%), Positives = 97/307 (31%), Gaps = 34/307 (11%)
Query: 351 ITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLE 410
+ + N + + + S E K R DY + + +
Sbjct: 333 VKLTERNDYIVWLNNSWRFSAEESLITKLILDVRHSLPADYANDMLCPRKRKVVETNIRD 392
Query: 411 AGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKEL--YITKSTGTPFVE----GE 464
+ D+ L +G+LDL TG+ + + T STG F
Sbjct: 393 ----MLVDISETDTQYDKLPFTNGVLDLATGEFLTGDRAKACVCTVSTGYAFSREEFAAA 448
Query: 465 PSQEFLDLVSGYFES--------EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKST 516
E + + G + E + R + AL G K + G +GKST
Sbjct: 449 ADSEAMRRLVGVIDDIQPDTPENAENRALYERAMSSALCGATKT-VIVFFYGDTMTGKST 507
Query: 517 LMNLIKYAFGNQY--VINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN---- 570
L+ A G + +D++ NP + + R V SE +
Sbjct: 508 SKRLLMSALGGLFIETGQTVLTDVLDK------GPNPFVANMHLRRAVFCSELPDFACNN 561
Query: 571 -DEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIV 629
++ + K++T C+ R + N + T I N D+A RR +
Sbjct: 562 ARKLRSDNFKKLT-EPCIVGRPCFSNKIH-NRNHATFIIDTNYRPVFDRVDNALMRRVAL 619
Query: 630 IPFDKPI 636
+ F
Sbjct: 620 VRFRTHF 626
>gi|67923658|ref|ZP_00517127.1| hypothetical protein CwatDRAFT_2551 [Crocosphaera watsonii WH 8501]
gi|67854499|gb|EAM49789.1| hypothetical protein CwatDRAFT_2551 [Crocosphaera watsonii WH 8501]
Length = 956
Score = 96.3 bits (238), Expect = 2e-17, Method: Composition-based stats.
Identities = 62/343 (18%), Positives = 107/343 (31%), Gaps = 96/343 (27%)
Query: 14 IHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKI---------------DKLPAC--GFGF 56
I + + L P++ DKRP R EE+ ++ + + G G
Sbjct: 44 IPDNWVLTPVK--DKRPLRPNWQEEEAIARCDLIELLVAGQKLKSSNGKEWHCHWTGIGL 101
Query: 57 VCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMN---KEGI 113
G + A D D D A + + L TP G+ + + +R++ E I
Sbjct: 102 RLGTVSGGVLAIDAD-GDLAEAKLQELSGGDLPLTPCWTSGKPGRRQLLYRISPEYWEKI 160
Query: 114 KKKKTTESTQGHLDILGCG-QYFVAYNIHPKTKKEYTWTTPPHRFKV-----EDTPLLSE 167
K K HL+ G Q + + HP+T + Y W P ++ +
Sbjct: 161 KTVKIDCGQGQHLEFRWDGCQSVLPPSKHPETGQ-YHWLVSPEESAQRNAQNQELTEKNG 219
Query: 168 EDVEY--LFKFFQE---------------------------------------------- 179
EDV + E
Sbjct: 220 EDVATAIAPDWLIEFLLQQNQPVYSDSPSLKLPCTENSSSENAPHKPVNELQGGQTHSDE 279
Query: 180 ---ITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAV 236
I P+ K + PS+ WT+ + + + ++ + +D+W+ V MA+
Sbjct: 280 SQPIYPPVYSSKGTYSPSQKWTDEDWARSYLEALASWRAD--------DYDQWVQVGMAL 331
Query: 237 HHETRG--SSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEI 277
+ G WS+Q S Y KW +F +
Sbjct: 332 QSVSDGLLWD-----WEHWSRQSSKYKPGGCERKWRSFKPSKG 369
>gi|41057131|ref|NP_957845.1| ORF068 NTPase [Orf virus]
gi|41018688|gb|AAR98293.1| ORF068 NTPase [Orf virus]
Length = 787
Score = 96.3 bits (238), Expect = 2e-17, Method: Composition-based stats.
Identities = 58/308 (18%), Positives = 99/308 (32%), Gaps = 34/308 (11%)
Query: 351 ITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLE 410
+ + N + + + S E K R DY + + +
Sbjct: 339 VKLTERNDYIVWLNNSWRFSAEESLITKLILDVRHSLPADYANDMLCPRKRKVVETNIRD 398
Query: 411 AGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKEL--YITKSTGT-----PFVEG 463
+ D+ L +G+LDL TG+ + + T STG F
Sbjct: 399 ----MLVDISETDTQYDKLPFTNGVLDLATGEFLTGDRAKACVCTVSTGYAFSREEFAAA 454
Query: 464 EPSQEFLDLVSGYF-------ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKST 516
S+ LV E+ E + R + AL G K + G +GKST
Sbjct: 455 ADSEAMRRLVGVINDIQPDTPENAENRALYERAMSSALCGATKT-VIVFFYGDTMTGKST 513
Query: 517 LMNLIKYAFGNQY--VINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN---- 570
L+ A G + +D++ NP + + R V SE +
Sbjct: 514 SKRLLMSALGGLFIETGQTVLTDVLDK------GPNPFVANMHLRRAVFCSELPDFACNN 567
Query: 571 -DEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIV 629
++ + K++T C+ R + N + T I N D+A RR +
Sbjct: 568 ARKLRSDNFKKLT-EPCIVGRPCFSNKIH-NRNHATFIIDTNYRPVFDRVDNALMRRVAL 625
Query: 630 IPFDKPIA 637
+ F +
Sbjct: 626 VRFRTHFS 633
>gi|167999191|ref|XP_001752301.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162696696|gb|EDQ83034.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 416
Score = 96.3 bits (238), Expect = 2e-17, Method: Composition-based stats.
Identities = 56/404 (13%), Positives = 119/404 (29%), Gaps = 111/404 (27%)
Query: 325 LYTADTKAW------YKKDKNNVYIWSLTLDKITASIMNFLVS-MKEDVFDLSEEPEDNN 377
+Y ++ W + + L AS+M +++ M + + D+ E +
Sbjct: 101 MYAKISRTWPYDIYSIQCSEGRKKEVKWALKSSKASMMKEILTGMYKFIADVCESYTETI 160
Query: 378 KNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILD 437
K + + + R+ + + E +LLDS +G + G+ +
Sbjct: 161 KPATKIIDFIQSSDNRRKMMYTCAGMLYKEGFE---------ELLDSRKDVIGMKGGMYN 211
Query: 438 LETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGG 497
+ + + YIT ST PFV +
Sbjct: 212 FIEDRFRRMEPDDYITLSTRIPFVPLD--------------------------------- 238
Query: 498 NKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLM 557
+ K+T N + S +M+ R ++ A P L L
Sbjct: 239 -------------CNSKAT--NEVLDLL-----AKMPTSLVMRKRV-QSLAATPELAMLK 277
Query: 558 GSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVR 617
I + E +E D++N +K++TG D +I +
Sbjct: 278 ERLIAFVQELDEGDKLNLGVMKELTGNDS-------------------LYIESSHDPLT- 317
Query: 618 NPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPE 677
+ +D +F+ K+ ++ ++ K Y++ ++ P
Sbjct: 318 ---------MHL---------KDINFSNKIPL-LAPVFMRFVIEEYKQYLT--YRLEEPN 356
Query: 678 VCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEY 721
E D + ++ + L +Y +
Sbjct: 357 EVKDCTEIICVSNDIFGQFLSANVEKNGKSIVAIKELYDTYKYW 400
>gi|255283191|ref|ZP_05347746.1| conserved hypothetical protein [Bryantella formatexigens DSM 14469]
gi|255266264|gb|EET59469.1| conserved hypothetical protein [Bryantella formatexigens DSM 14469]
Length = 1386
Score = 95.9 bits (237), Expect = 2e-17, Method: Composition-based stats.
Identities = 71/330 (21%), Positives = 124/330 (37%), Gaps = 29/330 (8%)
Query: 447 TKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNK-AQRFIH 505
+K Y +K P GE + D + S E +G + G +K Q+F+
Sbjct: 122 SKNDYASKRLSYPLEAGEI--KAYDRLISTLYSPEERHKIEWAIGAIVSGESKTIQKFMV 179
Query: 506 IRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIIS 565
+ G G+GKST++N+I+ F + Y + + + + +L + +V I
Sbjct: 180 LYGAAGTGKSTVLNIIEKLF-DGYC------TVFSAKDLGSSGSQFALEPFKTNPLVAIQ 232
Query: 566 ETNENDEINAA-KIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWW 624
E I+ ++ + + MT + +TY+ F F+ NK + + +
Sbjct: 233 HDGELSRIDDNTRLNSLVSHELMTVNEKFKSTYASRFKCF-LFVGSNKPVKITDGKSGLI 291
Query: 625 RRYI-VIPFDKPIANRDAS-FAQKLETKYTLEAKKWFLKGVKAYISKG--LDVDIPEVCL 680
RR I V P K I +R+ + +++ + A W +GV Y+ D IP L
Sbjct: 292 RRLIDVHPSGKKIPSREYNQLVHQIDFEL--GAIAWHCRGV--YMENPDYYDDYIPVEML 347
Query: 681 KAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTL 740
A D Y ID + + Y +Y E S R
Sbjct: 348 DAT------NDFYNFVIDSYSVFKREDGTSLKAAWEMYKQYCEDAK--VPYPDSRRVFKE 399
Query: 741 NLKQKGFIGGIKREKIEKEWKSKRIIKGLK 770
LK F + R ++E + + KG +
Sbjct: 400 ELKNY-FREVLDRFEMEDGTRVRSYYKGFR 428
>gi|307710139|ref|ZP_07646583.1| hypothetical protein SMSK564_1413 [Streptococcus mitis SK564]
gi|307619119|gb|EFN98251.1| hypothetical protein SMSK564_1413 [Streptococcus mitis SK564]
Length = 513
Score = 95.6 bits (236), Expect = 3e-17, Method: Composition-based stats.
Identities = 60/333 (18%), Positives = 127/333 (38%), Gaps = 34/333 (10%)
Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDL-----VSGYFE-SE 480
R++ + I D G +K + + T + S D ++ F
Sbjct: 153 RYIALGNCIYDTYYGDGMKYSPSIVFTHKVQVNYNSEATSPVLGDWSIDSWLTELFNNDA 212
Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540
E++ + + +A++ G +R I + G GG+GK + L+ G + + ++
Sbjct: 213 ELIHLAWQTI-LAVIRGYADERIIWLIGKGGTGKGSFQELLINLVGRINTASMKLIEL-- 269
Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEI-NAAKIKQMTGGDCMTARLNYGNTYSE 599
GK + +L+G +VI + + + + + + + D +T YS
Sbjct: 270 -----EGKNRFATSQLIGKHLVIGDDNPIDKVVTDPSTMFSLVTHDIVTIEKKGKQAYS- 323
Query: 600 SPASFTPFIV--PNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYT--LEA 655
A TP IV N+ + ++ +A RR ++PF N+D + ++++ Y +
Sbjct: 324 --ARLTPVIVQSSNRLIKIQGDKEAIARRTFILPFVSEF-NKD-GYKREIKQVYLKRQDV 379
Query: 656 KKWFLKGVKAY-ISKGLD--VDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESH 712
++ LK Y IS G P + KE + + + + ++ + +
Sbjct: 380 LEYVLKNALEYDISDGFKDISHHPAI----KEIHGKSMTSVEQFSSYLFSRVKSTFLPNS 435
Query: 713 SLAKSYSEYREQELNYDRKRISTRTVTLNLKQK 745
+ +Y ++ E KR + LK
Sbjct: 436 FMLWAYEQFCEGNG---LKRETKEAFHKELKDA 465
>gi|41018555|gb|AAR98163.1| ORF068 NTPase [Orf virus]
Length = 787
Score = 95.6 bits (236), Expect = 3e-17, Method: Composition-based stats.
Identities = 55/307 (17%), Positives = 97/307 (31%), Gaps = 34/307 (11%)
Query: 351 ITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLE 410
+ + N + + + S E K R DY + + +
Sbjct: 339 VKLTERNDYIVWLNNSWRFSAEESLITKLILDVRHSLPADYANDMLCPRKRKVVETNIRD 398
Query: 411 AGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKEL--YITKSTGTPFVE----GE 464
+ D+ L +G+LDL TG+ + + T STG F
Sbjct: 399 ----MLVDISETDTQYDKLPFTNGVLDLATGEFLTGDRAKACVCTVSTGYAFSREEFAAA 454
Query: 465 PSQEFLDLVSGYFES--------EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKST 516
E + + G + + + R + AL G K + G +GKST
Sbjct: 455 ADSEAMRRLVGVIDDIQPDTPENADNRALYERAMSSALCGATKT-VIVFFYGDTMTGKST 513
Query: 517 LMNLIKYAFGNQY--VINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN---- 570
L+ A G + +D++ NP + + R V SE +
Sbjct: 514 SKRLLMSALGGLFIETGQTVLTDVLDK------GPNPFVANMHLRRAVFCSELPDFACNN 567
Query: 571 -DEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIV 629
++ + K++T C+ R + N + T I N D+A RR +
Sbjct: 568 ARKLRSDNFKKLT-EPCIVGRPCFSNKIH-NRNHATFIIDTNYRPVFDRVDNALMRRVAL 625
Query: 630 IPFDKPI 636
+ F
Sbjct: 626 VRFRTHF 632
>gi|74230780|gb|ABA00585.1| NTPase [Orf virus]
Length = 787
Score = 95.6 bits (236), Expect = 3e-17, Method: Composition-based stats.
Identities = 55/307 (17%), Positives = 97/307 (31%), Gaps = 34/307 (11%)
Query: 351 ITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLE 410
+ + N + + + S E K R DY + + +
Sbjct: 339 VKLTERNDYIVWLNNSWRFSAEESLITKLILDVRHSLPADYANDMLCPRKRKVVETNIRD 398
Query: 411 AGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKEL--YITKSTGTPFVE----GE 464
+ D+ L +G+LDL TG+ + + T STG F
Sbjct: 399 ----MLVDISETDTQYDKLPFTNGVLDLATGEFLTGDRAKACVCTVSTGYAFSREEFAAA 454
Query: 465 PSQEFLDLVSGYFES--------EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKST 516
E + + G + + + R + AL G K + G +GKST
Sbjct: 455 ADSEAMRRLVGVIDDIQPDTPENADNRALYERAMSSALCGATKT-VIVFFYGDTMTGKST 513
Query: 517 LMNLIKYAFGNQY--VINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN---- 570
L+ A G + +D++ NP + + R V SE +
Sbjct: 514 SKRLLMSALGGLFIETGQTVLTDVLDK------GPNPFVANMHLRRAVFCSELPDFACNN 567
Query: 571 -DEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIV 629
++ + K++T C+ R + N + T I N D+A RR +
Sbjct: 568 ARKLRSDNFKKLT-EPCIVGRPCFSNKIH-NRNHATFIIDTNYRPVFDRVDNALMRRVAL 625
Query: 630 IPFDKPI 636
+ F
Sbjct: 626 VRFRTHF 632
>gi|182637532|ref|YP_001828703.1| putative helicase [Lactococcus phage 1706]
gi|157884971|gb|ABV91262.1| putative helicase [Lactococcus phage 1706]
Length = 1317
Score = 94.8 bits (234), Expect = 5e-17, Method: Composition-based stats.
Identities = 63/346 (18%), Positives = 123/346 (35%), Gaps = 32/346 (9%)
Query: 446 PTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGN-KAQRFI 504
P K Y T E E + F +L+S + EE+ +G L G K ++F+
Sbjct: 122 PKKTDYSTYQLSYTPTEME-TPAFDELMSVLYADEELEKILW-ALGALLSGKMSKIEKFL 179
Query: 505 HIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVII 564
++ G G+GK T +N+IK F QY + + + ++I
Sbjct: 180 YLYGAKGTGKGTAINIIKKMF-EQYWGPIDLRTLTGSSEFATSAVTEVP-------MLID 231
Query: 565 SETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF--TPFIVPNKHLFVRNPDDA 622
++++ + N + ++T + + + + + Y P F N+ V+N D
Sbjct: 232 ADSDISRIRNEQNLLKLTSHEELMRNVKFKSPY---PVVFDGLLITASNERYTVKNKDSG 288
Query: 623 WWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKA 682
RR IV+ + Q+L + E + ++ + +G +
Sbjct: 289 ITRRAIVV--NPTGKTVPYDMYQRLYKQIDYEIPGIAYRAMQIFKKRGASYYE-NLVDTE 345
Query: 683 KEEERQGTDTYQAWIDD-CCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLN 741
E +D A+I + + + + + +Y Y +
Sbjct: 346 MVEY---SDKVFAFIRESSFNYIGKEYVKLVDVVPAYQRY------LTDMGWDNKGAKRE 396
Query: 742 LKQ---KGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDNSNI 784
LK K F +K K E+ + + KG + AF +N +
Sbjct: 397 LKNELHKYFESYVKDTKDEEGNRIYDVYKGFRTDIAFPEEVNNKEV 442
>gi|160932537|ref|ZP_02079927.1| hypothetical protein CLOLEP_01375 [Clostridium leptum DSM 753]
gi|156868496|gb|EDO61868.1| hypothetical protein CLOLEP_01375 [Clostridium leptum DSM 753]
Length = 1383
Score = 94.4 bits (233), Expect = 8e-17, Method: Composition-based stats.
Identities = 73/438 (16%), Positives = 153/438 (34%), Gaps = 49/438 (11%)
Query: 364 EDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLD 423
++ L + +K ++ R F++ + ++ ++ + + +LD
Sbjct: 52 DEQDALQLIDRELDKYAEENRKNFDSSIKVLHMWDSESGMIDSWHKYCQKQMRDSFHMLD 111
Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVM 483
F K+ Y +K P EG + + L+S + EE
Sbjct: 112 EKLIFSNTPT-------------NKKDYASKRLNYPLEEGA-TDAWNKLMSTIYSEEE-R 156
Query: 484 DYFTRCVGMALLGGNK-AQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542
+G + G +K Q+F+ + G G+GKST++N+++ F Y + +
Sbjct: 157 TKIEWAIGSIVCGESKKLQKFMVLYGAAGTGKSTVLNIVQQLFEGYYSV-------FDAK 209
Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEI-NAAKIKQMTGGDCMTARLNYGNTYSESP 601
+ + +L + +V I + I + ++ + + MT + +TY+
Sbjct: 210 ALGSSSNSFALEAFKTNPLVAIQHDGDLSRIEDNTRLNSLVSHELMTVNEKFKSTYANRF 269
Query: 602 ASFTPFIVPNKHLFVRNPDDAWWRRYI-VIPFDKPIANRD-ASFAQKLETKYTLEAKKWF 659
F F+ NK + + + RR I V P ++ ++ + +++E + A
Sbjct: 270 KCF-LFMGTNKPVKITDAKSGLIRRLIDVSPSGNKLSPKEYKAVTKQIEFELGAIAYH-- 326
Query: 660 LKGVKA-YISK--GLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAK 716
+ Y+ D IP L A D Y ID + + +
Sbjct: 327 ---CQEVYLENPGRYDDYIPVTMLGAS------NDFYNFIIDSYHVFKKEDGTTLKASWE 377
Query: 717 SYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL----- 771
Y Y ++ S R LK F +R ++ + + G +
Sbjct: 378 MYKTYCDEAKVTF--PFSQRIFKEELKNY-FRDYKERFNLDDGTRVRSYYIGFRTEKFED 434
Query: 772 KPAFESVDDNSNIIDFKR 789
K E + +I+F +
Sbjct: 435 KTLTEQDEPEHKLIEFLK 452
>gi|113927238|emb|CAL22882.1| hypothetical protein ZH07 [Staphylococcus aureus]
Length = 539
Score = 94.0 bits (232), Expect = 8e-17, Method: Composition-based stats.
Identities = 49/279 (17%), Positives = 99/279 (35%), Gaps = 22/279 (7%)
Query: 418 TSDLLDSSSRFLGEQDGILDLETGQKVKPT----KELYITKSTGTPFVEGEPSQE-FLDL 472
+ L + R++G + + DL T Q VK + + + S T V + F
Sbjct: 151 DVEELVENERYIGCGENMFDLNTFQVVKNSIDIFPKTRLNLSLSTNDVITDKIPPYFKQY 210
Query: 473 VSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVI 531
+ +++ + + + L K +R + + G +GKS + L+K F Y
Sbjct: 211 MLQLANYDDDLQYFLFQHTAVLLTADTKYRRGLILYGGAKNGKSVYIELVKSFF---YSN 267
Query: 532 NAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKI---KQMTGGDCMT 588
+ + + + L+G RI+ E + I+ A + K++ + +
Sbjct: 268 DIVSKTLNE------LGGRFDKESLIGKRIMASDEVGK-ANIDEATVNDFKKLLSVEPIH 320
Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPD-DAWWRRYIVIPFDKPIANRDASFAQKL 647
A G T E N L + A RR VIP + + D +KL
Sbjct: 321 ADRK-GRTQVEVTLDLKLIFNTNAVLNFPSSHAKALERRIAVIPCEYYVEKADPDLIEKL 379
Query: 648 ETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEE 686
+ + E + + K + ++ + + +
Sbjct: 380 QDE-KKEIFLYLMYVYKQIVKNDIEYLQNDRVTEISHDW 417
>gi|167767035|ref|ZP_02439088.1| hypothetical protein CLOSS21_01553 [Clostridium sp. SS2/1]
gi|167711010|gb|EDS21589.1| hypothetical protein CLOSS21_01553 [Clostridium sp. SS2/1]
Length = 1387
Score = 94.0 bits (232), Expect = 8e-17, Method: Composition-based stats.
Identities = 93/470 (19%), Positives = 156/470 (33%), Gaps = 78/470 (16%)
Query: 316 FSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPED 375
F +Y K L +Y + +WS + I L + E+
Sbjct: 18 FKMYPKSKDL-MIRGGDFYAVWMEDEGLWSTDEEDALQIIDRELDKFAK---------EN 67
Query: 376 NNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGI 435
+K + + R D V+ K + + +LD F +
Sbjct: 68 QDKFNCNIRVLHMWDSETGMVDSWH--KYCQKQKRD------SFHMLDEKLIFSNTET-- 117
Query: 436 LDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRC-VGMAL 494
KE Y +K P G+ S + L+S + EE Y +G +
Sbjct: 118 -----------KKEDYASKRLDYPLEPGDTSA-YEKLISTLYTEEE--RYKIEWAIGSIV 163
Query: 495 LGGNK-AQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP---EAGKAN 550
G +K Q+F+ + G G+GKST++N+I+ F N Y +A I EA K N
Sbjct: 164 TGDSKTIQKFLVLYGEAGTGKSTILNIIQKLF-NGYCSTFDAKAIGSASNMFALEAFKTN 222
Query: 551 PSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVP 610
P + I + + + + ++ + + MT + + ++ S +F F+
Sbjct: 223 PLVA--------IQHDGDLSRIEDNTRLNSLVSHELMTVNEKFKSAFTNSFKAF-LFMGT 273
Query: 611 NKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFL--KGVKAYIS 668
NK + + + RR I D + KL +K EA G AY
Sbjct: 274 NKPVKITDGKSGLIRRLI----DVKPS------GNKLSSKAYKEAFSKIDFELGAIAYHC 323
Query: 669 K--------GLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSE 720
K D IP L A D Y +D + + + Y
Sbjct: 324 KEVYLENPGRYDNYIPTAMLGAS------NDFYNFVLDSYHIFKKENGTTLKAAWEMYKT 377
Query: 721 YREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLK 770
Y ++ S R LK F +R +E + + KG +
Sbjct: 378 YCDEAK--VPFPFSKRNFKEELKNY-FHDFNERFNMEDGSRVRSYYKGFR 424
>gi|155122360|gb|ABT14228.1| hypothetical protein MT325_M674R [Paramecium bursaria chlorella
virus MT325]
Length = 653
Score = 94.0 bits (232), Expect = 9e-17, Method: Composition-based stats.
Identities = 43/339 (12%), Positives = 107/339 (31%), Gaps = 37/339 (10%)
Query: 457 GTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGN--------KAQRFIHIRG 508
T + + + ++ R + + L+G Q G
Sbjct: 328 NTEYDDWFDIPT--PHLDSVMNHQQWDADVQRWL-LCLIGRVLYKTNEIDSWQVCPFFVG 384
Query: 509 VGGSGKSTL-MNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISET 567
+ G+GKS L + +IK F + + + +V E
Sbjct: 385 LAGTGKSLLVLKVIKQFF----------ETVDVGILSNNIERKFGISAFFDKMLVCAPEI 434
Query: 568 NENDEINAAKIKQMTGGDCMTARLNYGNTYSE---SPASFTPFIVPNKHLFVRNPDDAWW 624
+ I A+ + + G+ ++ + + + + P + N+ + +
Sbjct: 435 RNDLAIEQAEFQSIVSGEEISVAIKHQKAFMQEWDVP----IVLAGNEVPGWADSGGSIQ 490
Query: 625 RRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVK----AYISKGLDVDIPEVCL 680
RR IV F + + + D ++KL T+ +K K + Y + +PE +
Sbjct: 491 RRLIVFEFKQAVKSGDMKLSEKLYTEMPNIIRK-ANKAYRYFADKYAEDNIWTVLPEYFI 549
Query: 681 KAKEEERQGTDTYQAWI-DDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVT 739
+E + T+ ++++ + +G + + +Y + K+++
Sbjct: 550 STRETIARSTNFIESFLASEFLVLGGDNIVPFSDFKSALKDYAATNSLH-MKQLTNEAFG 608
Query: 740 LNLKQKGFI-GGIKREKIEKEWKSKRIIKGLKLKPAFES 777
+ + + ++G+ LK
Sbjct: 609 GPFSKYKVTILPQQTLTYNGREMNTIFLRGVTLKSTTAE 647
>gi|155370772|ref|YP_001426306.1| hypothetical protein FR483_N674R [Paramecium bursaria Chlorella
virus FR483]
gi|155124092|gb|ABT15959.1| hypothetical protein FR483_N674R [Paramecium bursaria Chlorella
virus FR483]
Length = 653
Score = 94.0 bits (232), Expect = 9e-17, Method: Composition-based stats.
Identities = 43/339 (12%), Positives = 107/339 (31%), Gaps = 37/339 (10%)
Query: 457 GTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGN--------KAQRFIHIRG 508
T + + + ++ R + + L+G Q G
Sbjct: 328 NTEYDDWFDIPT--PHLDSVMNHQQWDADVQRWL-LCLIGRVLYKTNEIDSWQVCPFFVG 384
Query: 509 VGGSGKSTL-MNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISET 567
+ G+GKS L + +IK F + + + +V E
Sbjct: 385 LAGTGKSLLVLKVIKQFF----------ETVDVGILSNNIERKFGISAFFDKMLVCAPEI 434
Query: 568 NENDEINAAKIKQMTGGDCMTARLNYGNTYSE---SPASFTPFIVPNKHLFVRNPDDAWW 624
+ I A+ + + G+ ++ + + + + P + N+ + +
Sbjct: 435 RNDLAIEQAEFQSIVSGEEISVAIKHQKAFMQEWDVP----IVLAGNEVPGWADSGGSIQ 490
Query: 625 RRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVK----AYISKGLDVDIPEVCL 680
RR IV F + + + D ++KL T+ +K K + Y + +PE +
Sbjct: 491 RRLIVFEFKQAVKSGDMKLSEKLYTEMPNIIRK-ANKAYRYFADKYAEDNIWTVLPEYFI 549
Query: 681 KAKEEERQGTDTYQAWI-DDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVT 739
+E + T+ ++++ + +G + + +Y + K+++
Sbjct: 550 STRETIARSTNFIESFLASEFLVLGGDNIVPFSDFKSALKDYAATNSLH-MKQLTNEAFG 608
Query: 740 LNLKQKGFI-GGIKREKIEKEWKSKRIIKGLKLKPAFES 777
+ + + ++G+ LK
Sbjct: 609 GPFSKYKVTILPQQTLTYNGREMNTIFLRGVTLKSTTAE 647
>gi|301116649|ref|XP_002906053.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262109353|gb|EEY67405.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 238
Score = 93.2 bits (230), Expect = 1e-16, Method: Composition-based stats.
Identities = 46/235 (19%), Positives = 84/235 (35%), Gaps = 19/235 (8%)
Query: 425 SSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEV 482
++G +G+ DL T + + T + + E + F S F EE
Sbjct: 4 DHNYIGFSNGVYDLSTAKFINATDVPKGIQVRKYINQRFEHTETPLFDKYFSFQFTEEED 63
Query: 483 MDYFTRCVGMALL-GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQN 541
++ +G L +K + I G GGSGKS L NL+K+AFG +
Sbjct: 64 REFIYFLIGRCLTVLDDKFDFMLMIHGQGGSGKSLLANLVKFAFGQDQIGLLS------- 116
Query: 542 RPPEAGKANPSLIRLMGSRIVIISETNEN---DEINAAKIKQMTGGDCMTARLNYGNTYS 598
+ + L +IV + N + + MT G ++ + +
Sbjct: 117 ---NSMQEKFGLSEFATKQIVCCDDMPHNIAKTLPRSDFLSMMTRG-SISCPVKGKGSIE 172
Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKY 651
+ I N ++ RR +++ F K + + D QK++ +
Sbjct: 173 VLDWNIPTLINSNHMPNYKDEAGEIVRRLMIVEFGKQVPDDEVDVELEQKIKDQE 227
>gi|86158263|ref|YP_465048.1| hypothetical protein Adeh_1839 [Anaeromyxobacter dehalogenans
2CP-C]
gi|85774774|gb|ABC81611.1| conserved hypothetical protein [Anaeromyxobacter dehalogenans
2CP-C]
Length = 751
Score = 93.2 bits (230), Expect = 2e-16, Method: Composition-based stats.
Identities = 94/621 (15%), Positives = 180/621 (28%), Gaps = 108/621 (17%)
Query: 25 LGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDID-SKDEKTANT--F 81
P+ + + L ++ P G GFV ++ D D D A
Sbjct: 42 AKTNDPKTWRPFRDALAFLKRTYDDPQAGVGFVFQRKLGVVF-IDFDHCLDTSGALLPWA 100
Query: 82 KDTFEILHGTPIVRI--GQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYN 139
E GT + R G+ +L + K + H+++ +Y
Sbjct: 101 APLLEPFRGTYVERSLSGRGLHVLALGSVPHAFSKLVPPAAAGDEHIEVYSEKRYAAI-- 158
Query: 140 IHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTN 199
T Y + L +++++ L + K ++ +++ +
Sbjct: 159 ----TGDTY-------DGAPAEL-LDKQKELDALLRALA--------PKATVAATRSDEH 198
Query: 200 NNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGST 259
+I + L + HDEW+ V MA+H GS++G + WS G
Sbjct: 199 VPLSAQEVDKIRSALDAIDPDV---GHDEWLRVGMALHFGFEGSAEGLALWNEWSAGGGK 255
Query: 260 YDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFS--------DAY 311
Y +W +F + G T F + + + D
Sbjct: 256 YKNGEPADRWRSF--KRNGVTLGSLFHFAKKHGWRPEPTAEQDFGPALARDEAFVSLDDL 313
Query: 312 NKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSE 371
N F I + G ++ Y + + + + A + V
Sbjct: 314 NSQFFVIEESGRHFVACES---YDHARRRRMLKRFSFAEFKARYLGRTV----------- 359
Query: 372 EPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGE 431
+ + + W RRQ + G + + L S
Sbjct: 360 -LNEKGRQIPMAKSWLEWPGRRQYL---------------GGVVFVPGRSLPSD------ 397
Query: 432 QDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVG 491
+L+L G V P + V + E V G+ + R
Sbjct: 398 ---VLNLWGGWAVAPKPGDWSLLREHIHDVICSKNDELDAYVMGW-----LRRLVQR--- 446
Query: 492 MALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANP 551
+ + +RGV G+GKS + ++ G + A +
Sbjct: 447 ----PDEPGEVVLVLRGVQGAGKSVVGYALQRMCGQHGMAVASQRAVTGQFN-------- 494
Query: 552 SLIRLMGSRIVIISETN-ENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVP 610
L +++ +E D + +K + + + E P +
Sbjct: 495 --AHLRDLLLLVANEAVFPGDRSGTSALKALATDPTIFLEQKGIDA-VEVPNYLHILMTT 551
Query: 611 NKHLFVR-NPDDAWWRRYIVI 630
N++ V DD RR+ V+
Sbjct: 552 NENWAVPVALDD---RRFAVL 569
>gi|168032222|ref|XP_001768618.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162680117|gb|EDQ66556.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 330
Score = 93.2 bits (230), Expect = 2e-16, Method: Composition-based stats.
Identities = 42/291 (14%), Positives = 94/291 (32%), Gaps = 60/291 (20%)
Query: 447 TKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFI-- 504
EL +K + + + + + +++D+ N+ +
Sbjct: 56 NPELITSKIFCVIYDDKFITDVCESYMETIEPATKIIDFIQSS-------DNRKKMMYTC 108
Query: 505 --HIRGVGGSGKSTLMNLI---KYAFG-------------------NQYVINAEASDIMQ 540
+ G L+ + G + ++ S +
Sbjct: 109 AGMLYKEG------FEELLDSKRDVIGMKSGVYNFTEDRFRMMELDDYITLSTRISFVPL 162
Query: 541 NRPPEAGKANPSL----IRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNT 596
+ EA L L G I ++ E +E +++N + +K++TG D + R Y
Sbjct: 163 DYNSEATNEVLDLLAKLAMLKGRLIALVQEPDEGNKLNLSVMKEITGNDSLYVRGLYKEG 222
Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN-------------RDASF 643
+ P + ++ N+ + D A W R ++PF + +D +F
Sbjct: 223 -TIIPQTAKFILIANRIPQMSMFDKAVWSRIRIMPFVSTFVDKIELSHDLLTTHLKDINF 281
Query: 644 AQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQ 694
+ K+ + K ++ K Y++ GL + P E + +
Sbjct: 282 SNKIHF-FAPVFMKLVIEEYKQYLTYGL--EEPNEVKDCTEIICVSNNIFG 329
Score = 46.3 bits (108), Expect = 0.021, Method: Composition-based stats.
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Query: 419 SDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVE----GEPSQEFLDLVS 474
+LLDS +G + G+ + + + YIT ST FV E + E LDL++
Sbjct: 118 EELLDSKRDVIGMKSGVYNFTEDRFRMMELDDYITLSTRISFVPLDYNSEATNEVLDLLA 177
Query: 475 GY 476
Sbjct: 178 KL 179
>gi|195982544|ref|YP_002122374.1| V13 [Sputnik virophage]
gi|226732444|sp|B4YNF3|V13_SPTNK RecName: Full=Putative helicase V13
gi|193245553|gb|ACF16997.1| V13 [Sputnik virophage]
Length = 779
Score = 93.2 bits (230), Expect = 2e-16, Method: Composition-based stats.
Identities = 70/357 (19%), Positives = 125/357 (35%), Gaps = 43/357 (12%)
Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLD-----LVSGYFESEE 481
L +DGI + T + + K P+ + +E + F++ +
Sbjct: 423 YLL-FKDGIYNFNTSTFTEGFDPNIVFK-FRVPWKFPKYDKELIKKAYKLSFGALFDNPK 480
Query: 482 VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQN 541
F + AL G K ++ G +GKS L+ +++Y FG+ Y+ +I N
Sbjct: 481 P---FITSLACALAGEIKLKKIYFCPGKSNAGKSYLIKMLQYCFGD-YIGTINGENISYN 536
Query: 542 RPPEAGKANPS--LIRLMGSRIVIISETNENDEINAAKIKQMTG-GDCMTARLNYGNTYS 598
+A L +RIV+ SE + I+ IK+ GD + R + + S
Sbjct: 537 SKDSRDEAAKYRWAYLLANTRIVMSSEISMKKSIDGNMIKKFASAGDKIVGRKHCESEIS 596
Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN------------RDASFAQK 646
+P +FT F + N + D+A R + F +D K
Sbjct: 597 FTP-NFTIFCMFNDIPEIEPHDEAVSNRLVYHEFPYVFVKEEELNEKPYNKLKDEDLDSK 655
Query: 647 LETK-YTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKE-------------EERQGTDT 692
+TK + L K Y+ GL EV K E + T+
Sbjct: 656 YQTKDFASGFIHILLDAYKNYLENGLPEFDNEVKEKWTAQTKQIDKVTSIINEYYEVTNN 715
Query: 693 YQAW--IDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGF 747
+ + +++ E + ++E +EL R + LK++ F
Sbjct: 716 VKDFVPLNEILKFKEQHKDLKTISKNRFNEILVEELKLKEGRSAKLRYWSGLKKRHF 772
>gi|157953752|ref|YP_001498643.1| hypothetical protein AR158_C562L [Paramecium bursaria Chlorella
virus AR158]
gi|156068400|gb|ABU44107.1| hypothetical protein AR158_C562L [Paramecium bursaria Chlorella
virus AR158]
Length = 654
Score = 92.9 bits (229), Expect = 2e-16, Method: Composition-based stats.
Identities = 53/308 (17%), Positives = 108/308 (35%), Gaps = 29/308 (9%)
Query: 480 EEVMDYFTRCVGMALLGGN---KAQRFIHIRGVGGSGKSTL-MNLIKYAFGNQYVINAEA 535
E+V + +G L N Q +G+ +GKST+ + +IK F
Sbjct: 355 EDVQRWLFALLGRMLYPVNQVDSWQVVPFFKGLAATGKSTIILKVIKNFF---------- 404
Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595
+ + + V+ E + I A+ + M G+ + + +
Sbjct: 405 ETVDVGILSNNIERKFGISAFHDKFCVLAPEIKNDLAIEQAEFQSMVSGEDVQVNVKHKK 464
Query: 596 TYSE---SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYT 652
++E P + + N+ + + RR +V F KP+ + D +KL K
Sbjct: 465 AFAEEWRVPMA----LAGNEVPGWADNGGSIQRRLVVFEFKKPVRHGDMKLGEKL-DKEL 519
Query: 653 LEAKKWFLKGVK----AYISKGLDVDIPEVCLKAKEEERQGTDTYQAWI-DDCCDIGENL 707
+ K Y + +PE + +E + T+ ++++ +GEN
Sbjct: 520 PFILRKCNKAYLDLAGKYSDVNIWSVLPEYFINTREALARATNFIESFMASSEVILGENE 579
Query: 708 WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGF-IGGIKREKIEKEWKSKRII 766
+ E+ + + K+++ T ++ G G + + I
Sbjct: 580 ICSLGDFKSALREHATMNVMHT-KQLTADVFTGPFEKYGIKFLGAQTLDYCGQSVHTEFI 638
Query: 767 KGLKLKPA 774
+GL LK A
Sbjct: 639 QGLSLKSA 646
>gi|49257044|dbj|BAD24833.1| hypothetical protein [Staphylococcus aureus]
Length = 547
Score = 92.1 bits (227), Expect = 3e-16, Method: Composition-based stats.
Identities = 48/280 (17%), Positives = 99/280 (35%), Gaps = 24/280 (8%)
Query: 418 TSDLLDSSSRFLGE-QDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFL-DLVSG 475
+ L +++G + +L T + VK +++ +G+ E + D S
Sbjct: 151 DVEELVEDKQYIGCGPNM-FNLNTFEVVKNCIDIFPKTRLNIEIDKGDVINENIPDHFSK 209
Query: 476 YFE-----SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530
Y ++ + + + L K +R + + G +GKS + L+K F V
Sbjct: 210 YMLELANFDTDLKHFLIQHTAILLTANTKLRRGLILHGAANNGKSVYIKLLKSFFHQNDV 269
Query: 531 INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKI---KQMTGGDCM 587
I+ +++ E+ L+G R++ E E IN + K++ + +
Sbjct: 270 ISKTLNELGGRFDKES---------LIGKRLMASDEIGE-ARINEKVVNDFKKLLSVEPI 319
Query: 588 TARLNYGNTYSESPASFTPFIVPNKHLFVRNPD-DAWWRRYIVIPFDKPIANRDASFAQK 646
G T E N L + A RR VIP + + D +K
Sbjct: 320 HVDRK-GQTQVEVTLDLKLIFNTNAVLNFPSEHAKALERRIAVIPCEYYVEKADPDLIEK 378
Query: 647 LETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEE 686
L+ + E + + K + ++ + + +
Sbjct: 379 LQDE-KKEIFLYLMYVYKQIVKNDIEYLQNDRVTEISHDW 417
>gi|157952927|ref|YP_001497819.1| hypothetical protein NY2A_B623L [Paramecium bursaria Chlorella
virus NY2A]
gi|155123154|gb|ABT15022.1| hypothetical protein NY2A_B623L [Paramecium bursaria Chlorella
virus NY2A]
Length = 654
Score = 92.1 bits (227), Expect = 4e-16, Method: Composition-based stats.
Identities = 53/308 (17%), Positives = 107/308 (34%), Gaps = 29/308 (9%)
Query: 480 EEVMDYFTRCVGMALLGGN---KAQRFIHIRGVGGSGKSTL-MNLIKYAFGNQYVINAEA 535
EEV + +G L N Q +G+ +GKST+ + +IK F
Sbjct: 355 EEVQRWLFALLGRMLYPVNQVDSWQVVPFFKGLAATGKSTIILKVIKNFF---------- 404
Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595
+ + + V+ E + I A+ + M G+ + + +
Sbjct: 405 ETVDVGILSNNIERKFGISAFHDKFCVLAPEIKNDLAIEQAEFQSMVSGEDVQVNVKHKK 464
Query: 596 TYSE---SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYT 652
++E P + + N+ + + RR IV F KP+ + D +KL K
Sbjct: 465 AFAEEWRVPMA----LAGNEVPGWADNGGSIQRRLIVFEFKKPVRHGDMKLGEKL-DKEL 519
Query: 653 LEAKKWFLKGVK----AYISKGLDVDIPEVCLKAKEEERQGTDTYQAWI-DDCCDIGENL 707
+ K Y + +PE + +E + T+ ++++ +GEN
Sbjct: 520 PYILRKCNKAYLDLAGKYSDVNIWSVLPEYFINTREALARATNFIESFMASSEVILGENE 579
Query: 708 WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGF-IGGIKREKIEKEWKSKRII 766
+ E+ + + K+++ ++ G G + + I
Sbjct: 580 ICSLGDFKSALREHATTNVMHT-KQLTADVFAGPFEKYGIKFLGAQTLDYCGQSVHTEFI 638
Query: 767 KGLKLKPA 774
+GL LK +
Sbjct: 639 QGLSLKSS 646
>gi|307149770|ref|YP_003890813.1| Primase 2 [Cyanothece sp. PCC 7822]
gi|306986570|gb|ADN18448.1| Primase 2 [Cyanothece sp. PCC 7822]
Length = 302
Score = 92.1 bits (227), Expect = 4e-16, Method: Composition-based stats.
Identities = 55/289 (19%), Positives = 102/289 (35%), Gaps = 45/289 (15%)
Query: 18 FKLIPLRLGDKRPQRLGKWEEQLLSSEKI-----------------DKLPAC--GFGFVC 58
+ LIP+ +K+P +W+ + +++ + P G G +
Sbjct: 23 WPLIPVN-RNKQPIGH-QWQNHPFTRDQLITNLTGRGYLVVLNKYYQRYPIRPPGIGILL 80
Query: 59 GVGEQP-LYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEG--IKK 115
G + L A D+D + + ++ L T G+ + F++ G IK
Sbjct: 81 GHNSKEFLVALDVDGYSAQ--SFIQELLPRLPPTIAFTSGRPGRCQYLFKLP-PGHSIKP 137
Query: 116 KKTTESTQGHLDILGCGQYFV-AYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLF 174
K L+I GQ V + HP T + Y W + ++ +V +
Sbjct: 138 FKRITGPGEALEIRATGQQSVLPPSPHPVTGQ-YFWLGG---CRPDEM------EVAIIP 187
Query: 175 KFFQEITVPLVKDKKS---IIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIP 231
+ ++ + KK ++R T + LS F + +D WI
Sbjct: 188 EQIIDLAQSPKRTKKIQPITKAPLIREVRHDRATTIEAAKSALSLIHANFAD-DYDSWIR 246
Query: 232 VVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDT 280
+ M++H S + RWS+ + Y YKW +F + D
Sbjct: 247 IGMSLHFI---SFSLLDDWDRWSQLSAKYQPGECYYKWASFKGSGVSDR 292
>gi|289803544|ref|ZP_06534173.1| bacteriophage P4 DNA primase [Salmonella enterica subsp. enterica
serovar Typhi str. AG3]
Length = 367
Score = 91.7 bits (226), Expect = 4e-16, Method: Composition-based stats.
Identities = 29/152 (19%), Positives = 49/152 (32%), Gaps = 17/152 (11%)
Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478
R +G ++G+LD TG K ++ F + F +
Sbjct: 221 RRLIGFRNGVLDTATGTFSPHHKSHWLRTLCDVDFTSPVEGETLETHAPHFWRWLDRAAG 280
Query: 479 S-EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
E D + M L Q F+ + G GGSGKS L + G +A
Sbjct: 281 GKPEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNATSATIET 340
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569
+ R L+G ++ + + +
Sbjct: 341 LESPRER---------AALIGFSLIRLPDQEK 363
>gi|291165042|gb|ADD81070.1| gp072 [Rhodococcus phage ReqiPoco6]
Length = 1294
Score = 91.7 bits (226), Expect = 4e-16, Method: Composition-based stats.
Identities = 58/329 (17%), Positives = 112/329 (34%), Gaps = 31/329 (9%)
Query: 448 KELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGN-KAQRFIHI 506
K Y++K G+ S D + G + E +G + G + Q+F+ +
Sbjct: 125 KTDYVSKRLPYCLAPGDYSAW--DELVGTLYNVEERAKIEWAIGAIVSGDAKRIQKFLVL 182
Query: 507 RGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAG---KANPSLIRLMGSRIVI 563
G G+GKST++N+I+ F Y EA + + A K NP + I
Sbjct: 183 YGPAGTGKSTVLNVIQQMF-EGYTTTFEAKALGMSSGAFATEVFKNNPLVA--------I 233
Query: 564 ISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAW 623
+ + + + ++ + + MT Y +Y+ +F F+ N + + +
Sbjct: 234 QHDGDLSRIEDNTRLNSIISHEEMTMNEKYKPSYTARVNAF-LFMGTNNPVKISDAKSGI 292
Query: 624 WRRYIVIPFD--KPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLK 681
RR I + K NR + QK++ + L+ ++ + P +
Sbjct: 293 IRRLIDVHPTGIKIPPNRYNTLIQKVDFELG-AIAHHCLEVYRSMGKNYYNSYRPLEMML 351
Query: 682 AKEEERQGTDTYQAWIDDCCDI-GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTL 740
D + +I+ DI E Y E+ + K +
Sbjct: 352 QT-------DVFFNYIEAHFDIFKEQDSVSLKQAYALYKEFCDDTG--IDKVLPQYKFRE 402
Query: 741 NLKQKGFIGGIKREKIEKEWKSKRIIKGL 769
L + + K + + I G
Sbjct: 403 EL--RNYFDEFKERGVVNGQTVRSIYSGF 429
>gi|291164934|gb|ADD80963.1| gp072 [Rhodococcus phage ReqiPepy6]
Length = 1294
Score = 91.7 bits (226), Expect = 5e-16, Method: Composition-based stats.
Identities = 58/329 (17%), Positives = 112/329 (34%), Gaps = 31/329 (9%)
Query: 448 KELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGN-KAQRFIHI 506
K Y++K G+ S D + G + E +G + G + Q+F+ +
Sbjct: 125 KTDYVSKRLPYCLAPGDYSAW--DELVGTLYNVEERAKIEWAIGAVVSGDAKRIQKFLVL 182
Query: 507 RGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAG---KANPSLIRLMGSRIVI 563
G G+GKST++N+I+ F Y EA + + A K NP + I
Sbjct: 183 YGPAGTGKSTVLNVIQQMF-EGYTTTFEAKALGMSSGAFATEVFKNNPLVA--------I 233
Query: 564 ISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAW 623
+ + + + ++ + + MT Y +Y+ +F F+ N + + +
Sbjct: 234 QHDGDLSRIEDNTRLNSIISHEEMTMNEKYKPSYTSRVNAF-LFMGTNNPVKISDAKSGI 292
Query: 624 WRRYIVIPFD--KPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLK 681
RR I + K NR + QK++ + L+ ++ + P +
Sbjct: 293 IRRLIDVHPTGIKIPPNRYNTLIQKVDFELG-AIAHHCLEVYRSMGKNYYNSYRPLEMML 351
Query: 682 AKEEERQGTDTYQAWIDDCCDI-GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTL 740
D + +I+ DI E Y E+ + K +
Sbjct: 352 QT-------DVFFNYIEAHFDIFKEQDSVSLKQAYALYKEFCDDTG--IDKVLPQYKFRE 402
Query: 741 NLKQKGFIGGIKREKIEKEWKSKRIIKGL 769
L + + K + + I G
Sbjct: 403 EL--RNYFDEFKERGVVNGQTVRSIYSGF 429
>gi|220915108|ref|YP_002490414.1| hypothetical protein Mnod_7757 [Methylobacterium nodulans ORS 2060]
gi|219952962|gb|ACL63348.1| hypothetical protein Mnod_7757 [Methylobacterium nodulans ORS 2060]
Length = 885
Score = 91.3 bits (225), Expect = 6e-16, Method: Composition-based stats.
Identities = 46/300 (15%), Positives = 87/300 (29%), Gaps = 41/300 (13%)
Query: 6 WKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGF-------GFVC 58
W++ +G++ I L G+K P+ + + ++ +++ G GF
Sbjct: 19 WQDYGHTVRKHGWRAIYLEHGEKGPKYADWNKRSVPTAADVERWQRSGLPGQRPNMGFNL 78
Query: 59 GVGEQ-----PLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEG- 112
G + A D D A + E R+G K+ F K
Sbjct: 79 GPQPGLPEGEHVVAVDADVFTPAAATAVNEILERRLPGAPHRLGNPAKVGTRFVRTKTAD 138
Query: 113 -------------IKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTT--PPHRF 157
T+ +++LG GQ V + HP YTW
Sbjct: 139 GSEPVRRQGRRFIFDGAPDTKENHNRVELLGQGQQSVVHGAHP-CGALYTWPDGISIVEL 197
Query: 158 KVEDTPLLSEEDVEYLF----KFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAF 213
E PL+ +++ + + + +V + + +
Sbjct: 198 HPEALPLIPIDELNAIIAECDAAMEAVGGKVVSGATFSRSGRNGGGADLTPLVEADAEVL 257
Query: 214 LSCFGEEFYNG-SHDEWIPVVMAVHHET-RGSSKGKEI------ARRWSKQGSTYDEENF 265
LS G + +W+ A +G+ + RW T D +
Sbjct: 258 LSGLGSVRNDLSDRGDWVMFTKAFAALCVPALGEGRVVDALLGFTDRWEAAPETGDPDEI 317
>gi|73661353|ref|YP_300134.1| hypothetical protein SSP0044 [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
gi|72493868|dbj|BAE17189.1| hypothetical protein [Staphylococcus saprophyticus subsp.
saprophyticus ATCC 15305]
Length = 546
Score = 91.3 bits (225), Expect = 6e-16, Method: Composition-based stats.
Identities = 38/244 (15%), Positives = 86/244 (35%), Gaps = 26/244 (10%)
Query: 448 KELYITKSTGTPFVEGEPSQEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHI 506
K IT+ T F + + ++ + + + + L K +R + +
Sbjct: 194 KSDVITEKTP---------PHFNRYMLEFANFDSDLQYFLFQHIAVLLTANTKYRRALLL 244
Query: 507 RGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISE 566
G +GKS +NL++ F ++ +++ +++ E+ L+G +++ E
Sbjct: 245 YGGAKNGKSVFINLVRSFFYSEDIVSKALNELQGRFDKES---------LVGKKLMASDE 295
Query: 567 TNENDEINAAKI---KQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV-RNPDDA 622
E I + K++ + + G T E+ N L A
Sbjct: 296 IGE-SRIQEKIVNDLKKLVSVEPVHVDRK-GKTQVETTLDLKLAFGTNARLNFPSAHAKA 353
Query: 623 WWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKA 682
RR VIP + + D +KL+ + E + + K + ++ + +
Sbjct: 354 LERRIAVIPCEYYVEKADPDLIEKLQDE-KKEIFLYLMYVYKQIVKNDIEYLQNDRVTEI 412
Query: 683 KEEE 686
+
Sbjct: 413 SHDW 416
>gi|32455419|ref|NP_862725.1| hypothetical protein pUH24_08 [Synechococcus elongatus PCC 7942]
gi|97589|pir||S20531 hypothetical protein F - Synechococcus sp. (strain PCC 7942)
plasmid pUH24
gi|247792|gb|AAB21875.1| repA [Synechococcus elongatus PCC 7942]
Length = 876
Score = 91.3 bits (225), Expect = 6e-16, Method: Composition-based stats.
Identities = 48/263 (18%), Positives = 80/263 (30%), Gaps = 29/263 (11%)
Query: 22 PLRLG-DKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANT 80
P G P E++ S ++ G G + G L A D D A
Sbjct: 41 PFDPGWQNNPLDHAAVAERIRSDRRV-----TGIGLLTGPASGGLIAVDFDGPTAHEALP 95
Query: 81 FKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGH---LDILGCGQYFVA 137
T L T G+ + +++ +E T + L++ V
Sbjct: 96 EGLTLTELPPTVAYTSGKPGRHQRLYQVPQERWAAIATQKLHSPDGDLLELRWNKLQSVI 155
Query: 138 YNIHPKTKKEYTWT--TPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSK 195
HP+T Y W P +V + P L + KS P
Sbjct: 156 VGQHPETGA-YRWVEGCAPWEIEVAEAP-------PELLDAMERQDRQTA--PKSYKPIV 205
Query: 196 TWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSK 255
+ +++ L+ + + ++ W+ V MA+ S + WS
Sbjct: 206 SAPASDDE---VAIARTMLAHVPASYAD-DYESWVAVGMALQSV---SDALLDDWIAWSA 258
Query: 256 QGSTYDEEN-FNYKWDTFDFEEI 277
Q S +D KW +F I
Sbjct: 259 QSSKFDGNRKLERKWASFKGSGI 281
>gi|218442562|ref|YP_002380883.1| primase [Cyanothece sp. PCC 7424]
gi|218175333|gb|ACK74064.1| Primase 2 [Cyanothece sp. PCC 7424]
Length = 305
Score = 91.3 bits (225), Expect = 6e-16, Method: Composition-based stats.
Identities = 58/303 (19%), Positives = 102/303 (33%), Gaps = 51/303 (16%)
Query: 18 FKLIPLRLGDKRPQRLGKWEEQLLSSEKI-----------------DKLPAC--GFGFVC 58
+ LIP+ L +K+P +W+ L+ +++ P G G +
Sbjct: 23 WPLIPVSL-NKQPIG-SQWQNHPLTRDQLITNLTQRGYIVVLNKKSQFYPIRPPGIGILL 80
Query: 59 G-VGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRM-NKEGIKKK 116
G + L A D+D D A L T G+ + F++ + + IK
Sbjct: 81 GHNKREFLIALDVD-GDSAIAY-LHRLIPSLPRTVAFTSGRLGRCQYLFKLPSNQSIKPF 138
Query: 117 KTTESTQGHLDILGCGQYFV-AYNIHPKTKKEYTWT--TPPHRFKVEDTP--LLSEEDVE 171
K L+I GQ V + HP T + Y W P+ V P L++
Sbjct: 139 KVITGPGEALEIRSTGQQSVLPPSPHPLTGQYY-WVGGCNPNEVNVALAPPELITLSQSH 197
Query: 172 YLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIP 231
K Q + + P + + + L+C + + +D WI
Sbjct: 198 SSKKKIQA-----TDNNPFVSPVRGKLTTSIE-----AALSALACIHPSYAD-EYDSWIR 246
Query: 232 VVMAVHHETRGSSKGKEI---ARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFT 288
+ M++H + + WS+ + Y +YKW +F I
Sbjct: 247 IGMSLHSIS------YSLLHDWDSWSQSSAKYKPGECHYKWASFKGSGISARTLFWYVKQ 300
Query: 289 SLF 291
S +
Sbjct: 301 SKY 303
>gi|307149891|ref|YP_003890934.1| Primase 2 [Cyanothece sp. PCC 7822]
gi|306986691|gb|ADN18569.1| Primase 2 [Cyanothece sp. PCC 7822]
Length = 302
Score = 91.3 bits (225), Expect = 6e-16, Method: Composition-based stats.
Identities = 48/235 (20%), Positives = 83/235 (35%), Gaps = 24/235 (10%)
Query: 53 GFGFVCGVGEQP-LYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKE 111
G G + G + L A D+D + ++ L T G+ + F++
Sbjct: 75 GVGILLGQNSKEFLIALDVDGYSAR--AYLQELIPHLPRTVAFTSGRPGRCQYLFKLP-P 131
Query: 112 G--IKKKKTTESTQGHLDILGCGQYFV-AYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEE 168
G IK K L+I GQ V + HP T + Y W + ++
Sbjct: 132 GHSIKPFKRITGPGEALEIRATGQQSVLPPSPHPVTGQ-YFWLGG---CRPDEI------ 181
Query: 169 DVEYLFKFFQEITVPLVKDKKS---IIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGS 225
+V + + ++ + KK ++R T + LS F +
Sbjct: 182 EVAIIPEQIIDLAQSPKRTKKIQPITKAPLIREVRHDRATTIEAAKSALSLIHPNFAD-D 240
Query: 226 HDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDT 280
+D WI + M++H S + RWS+ + Y YKW +F + D
Sbjct: 241 YDSWIRIGMSLHFI---SFSLLDDWDRWSQLSAKYQPGECYYKWASFKGSGVSDR 292
>gi|62464803|ref|YP_220367.1| replication initiation protein [Sulfolobus neozealandicus]
gi|56562187|emb|CAH89324.1| replication initiation protein [Sulfolobus neozealandicus]
Length = 866
Score = 90.9 bits (224), Expect = 7e-16, Method: Composition-based stats.
Identities = 122/728 (16%), Positives = 252/728 (34%), Gaps = 131/728 (17%)
Query: 8 EQAKQAIHNGFKLIPLRLGDKRPQRLGK--WEEQLLSSEKIDKLPACG---FGFVCGVGE 62
A+ + +G +IP++ DK+P ++E+ + E+I++ + G G VCG
Sbjct: 3 SYAQLYLKHGLSVIPIKYKDKKPALESWKEYQERQSTEEEIERWFSSGKYNVGIVCGKAS 62
Query: 63 QPLYAFDIDSKDEKTANTFKDTFEILHG-TPIVR-------IGQKPKILIPF-RMNKEGI 113
L D D K F +E + P +R + + + R+ I
Sbjct: 63 NNLVVLDFDEK-----RGFDKWYEYIDANYPHIRDMILSTWLEDTHNGVHVYLRVKDAVI 117
Query: 114 KKKKTTESTQGHLDILGCGQYFVA-YNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEY 172
+ K + LDI G G Y VA ++HP+ EY++ P ++++ +
Sbjct: 118 RSSKVGD----KLDIKGDGGYVVATPSLHPE-GTEYSFRLGPSD--GAKIIEITKKQFDE 170
Query: 173 LFKFFQEITVPLVKDKKSIIPSKTWTNN--NNRQYTNREITAFLSCFGEEFYNGSHDE-- 228
+ K +E+ + +D K + R +++ + E + G ++
Sbjct: 171 ILKTLREVGLIKSEDTKEERKERANAARVSGFRYLKEEDLSKVIGLAKEGYKEGYRNQLC 230
Query: 229 -----WIPV-----VMAVHHETRGSSKGKE---IARR-----WSKQGSTYD--------E 262
W+ V + AV GK+ +A R +S + YD E
Sbjct: 231 MFLSGWLAVAGIHPLQAVKIIKALHDDGKDEEPLANRCKPIVYSYAKAGYDLTQFREEME 290
Query: 263 ENFNYKWDTFDFEEIGDTAK-KRSTFTSLFYHHGKLIPKGLLASRFSDA--YNKAMFSIY 319
+ ++ + + + LI L A Y A+F I
Sbjct: 291 KECGGNLSGWNATGAISGVRGVQQILNATVGKDKALIIIRQLQEALGTASPYEDAVFEIL 350
Query: 320 KKGHFLYT---ADTKAWYK-KDKNNVYIWSLTLDKITASIMNF-------------LVSM 362
LY + K + + Y + + + + + +
Sbjct: 351 DYSRDLYVVANPEEKVVVRAYSTDKEYKEKEVVIEAYPTAVEVYENPVGGITKYRTVWAS 410
Query: 363 KEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLL 422
K + P ++ + R ++ ++ N+ + ++ G ++ +
Sbjct: 411 KVRQKPIEVGPATADEIADYLRAEGVVKHK--DLVYNTVSALLMGYIKYGK--AVIKNEF 466
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEV 482
+S +L +G ++ + KP++E + + ++ + + F
Sbjct: 467 ESPGFYLN--NGKIEPSRVEIRKPSREE----LREALELLDDLAERWFSHIKDKF----- 515
Query: 483 MDYFTRC-----VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
+ G +++++ G+ SGK+TL +I +G
Sbjct: 516 -AMVVKWGIISPFGYVYKQKGSWIKWLYLFGISKSGKTTLAEMIMKIWG----------- 563
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIV------IISETNENDEINAAKIKQMTGG-DCMTAR 590
NR P++G ++ RL G+ ++ +I+E + + N+ I + + TAR
Sbjct: 564 --INRAPKSGANIDNVARL-GAVLMQGTYPDVINEPGDVLKENSPLIDPIKNAIEQKTAR 620
Query: 591 LNYG-NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK-----PIANRDAS-- 642
Y Y E P+ N V D + RR+I++ FD+ IA D +
Sbjct: 621 GAYRHGNYVELPSLAMLVFTSN---RVYPKDSSLIRRFIIMNFDEQLSDDKIAEFDKNVR 677
Query: 643 -FAQKLET 649
KL+
Sbjct: 678 PLFNKLKA 685
>gi|149003120|ref|ZP_01828029.1| DNA primase [Streptococcus pneumoniae SP14-BS69]
gi|147758861|gb|EDK65857.1| DNA primase [Streptococcus pneumoniae SP14-BS69]
Length = 313
Score = 90.9 bits (224), Expect = 8e-16, Method: Composition-based stats.
Identities = 26/180 (14%), Positives = 62/180 (34%), Gaps = 21/180 (11%)
Query: 422 LDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ---------EFLDL 472
LD R++ +G+ +++T + + + IT T + +L+
Sbjct: 129 LD-DYRYIPVANGVYNIKTHKLEEFSPNFVITSKIQTEYNPCARKPILDGWFDFDRWLEA 187
Query: 473 VSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532
++ +EV+ + + A+ ++ + + G G +GK T +L++ G + N
Sbjct: 188 LA--VNDKEVVALLWQVINEAINPNRTRKKMVLMVGDGNNGKGTFQSLLENLIGRSNISN 245
Query: 533 AEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLN 592
+ L L G I + + + + + GD +
Sbjct: 246 LKPDQF---------GKEFYLGALEGKVCNIGDDISNKYLDEVSDLMSVISGDPVQVNKK 296
>gi|228475608|ref|ZP_04060326.1| conserved hypothetical protein [Staphylococcus hominis SK119]
gi|228270390|gb|EEK11825.1| conserved hypothetical protein [Staphylococcus hominis SK119]
Length = 535
Score = 90.6 bits (223), Expect = 9e-16, Method: Composition-based stats.
Identities = 46/281 (16%), Positives = 94/281 (33%), Gaps = 22/281 (7%)
Query: 416 SITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-----SQEFL 470
S D L R++G + DLE Q + +++ + + F
Sbjct: 148 SADIDKLVEDERYIGCHRYLFDLEQFQVTNNSIDIFPKTRLDVELDKSDSITSSIPPHFD 207
Query: 471 DLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529
+S +++ + + + L K +R + G +GKS + L++ F Q
Sbjct: 208 KYISELANFDDDLRYFLMQHTAVLLTSNRKLRRGLIFYGTANNGKSVYIKLMRAFFYRQD 267
Query: 530 VINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKI---KQMTGGDC 586
V++ +++ E+ L+G R++ E + I+ + K++ +
Sbjct: 268 VVSKTLNELGGRFDKES---------LIGKRLMASDEIGK-ARIDEKTVNDFKKLLSVEP 317
Query: 587 MTARLNYGNTYSESPASFTPFIVPNKHLFV-RNPDDAWWRRYIVIPFDKPIANRDASFAQ 645
+ G E N L A RR VIP D + D
Sbjct: 318 IHVDRK-GRRQVEVTLDLKLLFNTNAVLNFPPEHAKALERRIAVIPCDYYVEKADIDLND 376
Query: 646 KLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEE 686
KL+++ + + K + +D E + +
Sbjct: 377 KLKSE-KKHIFLYLMYVYKQMMIDDIDRIENEKVTELTHDW 416
>gi|162452339|ref|YP_001614706.1| pseudogene [Sorangium cellulosum 'So ce 56']
gi|161162921|emb|CAN94226.1| pseudogene [Sorangium cellulosum 'So ce 56']
Length = 122
Score = 90.6 bits (223), Expect = 1e-15, Method: Composition-based stats.
Identities = 23/124 (18%), Positives = 52/124 (41%), Gaps = 6/124 (4%)
Query: 660 LKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYS 719
++G + + GLD +P ++A E R D + +I D C I + W E +L + Y
Sbjct: 1 MRGCREWQKHGLD--VPASIMRATEAYRAENDPLRDFIKDRCVIAQEAWVEKAALRREYE 58
Query: 720 EYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVD 779
+ N + + ++ + ++ G KR + + + +G+ L+ +
Sbjct: 59 RWCLDNGN--KYPLGSKRFAVRIRDLGAAQSTKR--VPGHSSPRDVWRGIGLRYQGDDQP 114
Query: 780 DNSN 783
+ +
Sbjct: 115 EGAG 118
>gi|70725056|ref|YP_251970.1| hypothetical protein SH0055 [Staphylococcus haemolyticus JCSC1435]
gi|67003802|gb|AAY60815.1| hypothetical protein [Staphylococcus aureus]
gi|68445780|dbj|BAE03364.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435]
gi|166197602|dbj|BAG06211.1| hypothetical protein [Staphylococcus aureus]
gi|221148482|gb|ACL99843.1| hypothetical protein [Staphylococcus pseudintermedius]
gi|238768514|dbj|BAH66826.1| hypothetical protein [Staphylococcus aureus]
gi|283469276|emb|CAQ48487.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
ST398]
Length = 538
Score = 89.4 bits (220), Expect = 2e-15, Method: Composition-based stats.
Identities = 42/277 (15%), Positives = 93/277 (33%), Gaps = 22/277 (7%)
Query: 420 DLLDSSSRFLGEQDGILDLETGQKVKPT----KELYITKSTGTPFV-EGEPSQEFLDLVS 474
+ L +++G + +L+T + V + + + F +
Sbjct: 152 EKLVEHRQYIGCGRNMFNLKTFKVVDNDLEIFPKTRLDLELDINDTITDKIPPNFKQYML 211
Query: 475 GYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
++ + + + + L K +R + + G +GKS + L+K F Y +
Sbjct: 212 ELANYDHDLQYFLFQHMAVLLTADTKLRRGLFLYGTAKNGKSVYIKLVKSFF---YSNDI 268
Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKI---KQMTGGDCMTAR 590
+ + + L+G RI+ E + I+ A + K++ + + A
Sbjct: 269 VSKTLNE------LGGRFDKESLIGKRIMASDEVGK-ANIDEATVNDFKKLLSVEPIHAD 321
Query: 591 LNYGNTYSESPASFTPFIVPNKHLFVRNPD-DAWWRRYIVIPFDKPIANRDASFAQKLET 649
G T E N L + A RR VIP + + D +KL+
Sbjct: 322 RK-GRTQVEVTLDLKLIFNTNAVLNFPSSHAKALERRIAVIPCEYYVEKADPDLIEKLQD 380
Query: 650 KYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEE 686
+ E + + K + ++ + + +
Sbjct: 381 E-KKEIFLYLMYVYKQIVKNDIEYLQNDRVTEISHDW 416
>gi|92118040|ref|YP_577769.1| hypothetical protein Nham_2527 [Nitrobacter hamburgensis X14]
gi|91800934|gb|ABE63309.1| hypothetical protein Nham_2527 [Nitrobacter hamburgensis X14]
Length = 756
Score = 89.4 bits (220), Expect = 2e-15, Method: Composition-based stats.
Identities = 60/354 (16%), Positives = 113/354 (31%), Gaps = 40/354 (11%)
Query: 2 PVMQWKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEE-QLLSSEKIDKLPACGFGFVCGV 60
P Q + G +RL K P +G+W++ + + + A G +
Sbjct: 44 PSFQDASLLDEYEQAGHGAKLIRLRGKEP--VGRWKDLPSIGVDGGKRWMAKGGNVGFRM 101
Query: 61 GEQPLYAFDIDSK-----DEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKK 115
L DID + D+ A +D L P V G K
Sbjct: 102 SNTDLV-IDIDPRRFPDSDDVLARFLRDFD--LPAHPFVLTGG---GGYHLYFRKPAEDI 155
Query: 116 KKTTESTQGHLDILGCGQYFV-AYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLF 174
+ + G Y V A ++HP T + Y + P R + + P++ + L
Sbjct: 156 VRYEHDNYPGFEFRTSGHYVVSAGSVHPDTGRLYRFDDDPLRCSLSEAPMMP----DRLL 211
Query: 175 KFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVM 234
+ P+ +++ + +L + +W ++M
Sbjct: 212 DAIR-------------KPNIEASSDEAGALDPETLAEWLVDVDPTEFKDQR-KWQDMMM 257
Query: 235 AVHHETRGSSKGKEIARRWSKQGSTYDE--ENFNYKWDTFDFEEIGDTAKKRSTFTSLFY 292
A HH T G+ + I WS Y + E +WD + G T + +
Sbjct: 258 ACHHATNGTGVDEFIV--WSTSDPEYSDYSEVIRQRWDPLEAIPDGITVRTLIGYLPREK 315
Query: 293 HHG--KLIPKGLLASRF-SDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYI 343
+LI + F D + + +++ AD + +++ Y
Sbjct: 316 RREAVELINRTNALDDFPDDLDAEPDKTRSVWDDWVFVADAMQFVRREDGKKYR 369
Score = 43.6 bits (101), Expect = 0.15, Method: Composition-based stats.
Identities = 50/260 (19%), Positives = 91/260 (35%), Gaps = 33/260 (12%)
Query: 439 ETGQKVKPT--KELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMAL-L 495
ETG+ + I + G G+ + FL ++ F + D+ + + +
Sbjct: 408 ETGEFPDGESGRRYNIWRKDGVEAKAGDVTP-FLVHLAYLFPDGKDRDHVLDYLALLVQR 466
Query: 496 GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIR 555
+K + IRG G+GKS + L++ G++ + RP +
Sbjct: 467 PADKIHFALLIRGAQGTGKSWIGRLMERIVGSRNTV----------RPSNEEVVSHWTAW 516
Query: 556 LMGSRIVIISETNE-NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKH- 613
+ G+++ +I E + A ++K + + YS P N
Sbjct: 517 MEGAQLAVIEELMTLGRKEVANRLKPAITDPTIRIEEKNCSLYS-IPNCLNFIGFTNHED 575
Query: 614 -LFVRNPDDAWWRRYIVIPFDKPIANRD----ASFAQKLETKYTLEAKKWFLKGVKAYIS 668
L + + D RR++V+ F P RD + L+ K W LK
Sbjct: 576 ALPIEHGD----RRWLVV-F-SPARPRDSAYYQGLFEFLDGDGAAYVKHWLLK-----RK 624
Query: 669 KGLDVDIPEVCLKAKEEERQ 688
GL+ KE R+
Sbjct: 625 VGLNPHGVAPFTAGKEAMRR 644
>gi|160946062|ref|ZP_02093280.1| hypothetical protein PEPMIC_00015 [Parvimonas micra ATCC 33270]
gi|158447845|gb|EDP24840.1| hypothetical protein PEPMIC_00015 [Parvimonas micra ATCC 33270]
Length = 107
Score = 89.4 bits (220), Expect = 2e-15, Method: Composition-based stats.
Identities = 24/106 (22%), Positives = 42/106 (39%), Gaps = 10/106 (9%)
Query: 681 KAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTL 740
KA +E R+ D +I++ C I ES L Y ++ Q D + R+
Sbjct: 2 KATDEYREDMDILGPYINENCIINPMAKVESRKLYDDYKKWCYQN---DELELKNRSFYR 58
Query: 741 NLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDNSNIID 786
L +GF K ++ +K G+ LK + ++ + D
Sbjct: 59 QLVTRGF-------KKKRGTANKIFFYGIGLKKEQSYLSNSFSNSD 97
>gi|266621007|ref|ZP_06113942.1| conserved hypothetical protein [Clostridium hathewayi DSM 13479]
gi|288867323|gb|EFC99621.1| conserved hypothetical protein [Clostridium hathewayi DSM 13479]
Length = 1448
Score = 89.0 bits (219), Expect = 3e-15, Method: Composition-based stats.
Identities = 63/331 (19%), Positives = 117/331 (35%), Gaps = 31/331 (9%)
Query: 447 TKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNK-AQRFIH 505
K+ Y +K P G+ S + + SEE +G + G +K Q+F+
Sbjct: 122 NKKDYASKKLNYPLEAGDLSA--YEKLMSTLYSEEERTKIEWAIGSIVSGESKKLQKFMV 179
Query: 506 IRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIIS 565
+ G G+GKST++N+I+ F Y + + + + +L + +V I
Sbjct: 180 LYGAAGTGKSTVLNIIQQLFDGYYSV-------FDAKALGSSSNSFALEAFKTNPLVAIQ 232
Query: 566 ETNENDEI-NAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWW 624
+ I + ++ + + MT + +TYS F F+ NK + + +
Sbjct: 233 HDGDLSRIEDNTRLNSLVSHELMTVNEKFKSTYSNRFKCF-LFMGTNKPVKITDAKSGLI 291
Query: 625 RRYI-VIPFDKPIANRD-ASFAQKLETKYTLEAKKWFLKGVKAYISKG---LDVDIPEVC 679
RR I V P + ++ + +++E + A + S D IP
Sbjct: 292 RRLIDVSPSGNKLNPKEYKTIVKQVEFELGAIAYH-----CQEVYSNNPGRYDDYIPITM 346
Query: 680 LKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVT 739
L A D Y ID + + + Y Y + S R
Sbjct: 347 LGAS------NDFYNFIIDSYHVFKKENGTTLKAAWEMYKTYCDDAK--VGFPFSQRVFK 398
Query: 740 LNLKQKGFIGGIKREKIEKEWKSKRIIKGLK 770
LK F +R ++ + + G +
Sbjct: 399 EELKNY-FHDFQERFNLDDGTRVRSYYIGFR 428
>gi|254453953|ref|ZP_05067390.1| Bifunctional DNA primase/polymerase, N-terminal domain family
[Octadecabacter antarcticus 238]
gi|198268359|gb|EDY92629.1| Bifunctional DNA primase/polymerase, N-terminal domain family
[Octadecabacter antarcticus 238]
Length = 516
Score = 89.0 bits (219), Expect = 3e-15, Method: Composition-based stats.
Identities = 41/289 (14%), Positives = 82/289 (28%), Gaps = 41/289 (14%)
Query: 27 DKRPQRLGKWEEQLLSSEKIDKL----PACGFGFVCGVGEQPLYAFDIDSKDEKTA-NTF 81
K+P ++ +++ K P G C + D D+ A + F
Sbjct: 44 QKKPITANGHKDATNDLDQVKKWWTETPTANIGLAC--AASGIVVVDPDTYKPTFAWDQF 101
Query: 82 KDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIH 141
+ I + + + + + T +++ + ++
Sbjct: 102 RVEKGIDVIKTLT--QRSARGGWHY----IFAAQADTKYPGSLAVEVDVKHKGYIMLAPS 155
Query: 142 PKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTN-- 199
K Y W +D+ + + V++ +I P
Sbjct: 156 KFEGKVYAWHND--------------DDIADAPDWIKAKAP--VRNVATIAPQVDELTIA 199
Query: 200 --NNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQG 257
+ I L + +W+ V M + HET G G + +WS+Q
Sbjct: 200 DVSGPMFVEQARIDKALDAIPAA--ELDYGDWVKVGMGLCHETMGEESGLALWDQWSRQD 257
Query: 258 STYD-EENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLAS 305
Y ++ +W F + T S+F P LL
Sbjct: 258 PRYKGGDDLAKRWAKFT-----VGSDNPVTMRSIFEMAKARKPDYLLPD 301
>gi|282892588|ref|ZP_06300861.1| hypothetical protein pah_c272o027 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|281497712|gb|EFB40081.1| hypothetical protein pah_c272o027 [Parachlamydia acanthamoebae str.
Hall's coccus]
Length = 159
Score = 88.6 bits (218), Expect = 3e-15, Method: Composition-based stats.
Identities = 31/165 (18%), Positives = 67/165 (40%), Gaps = 7/165 (4%)
Query: 608 IVPNKHLFVRNPDDAWWRRYIVIPFDKP-IANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
++ N+ + + A RY+V+ + D ++L+ + + W LKG+K
Sbjct: 1 MMSNELPDLTDSSGALANRYLVLNLKTSWLHREDTGLLERLKMELS-GILLWALKGLKRL 59
Query: 667 ISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQEL 726
G P+ L+ EE ++ + ++D+ C+ SL +++++
Sbjct: 60 NENGH-FIQPKASLETIEELKELSSPIMVFVDEVCNFEPKACTSIKSLFIAWNQWCTSNG 118
Query: 727 NYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771
K+ +T++ + K F KR +E K + G+ L
Sbjct: 119 ---YKKGTTQSFGKSFK-AAFPEIKKRRLSFEEGKREWCYIGITL 159
>gi|311063734|ref|YP_003970459.1| DNA primase [Bifidobacterium bifidum PRL2010]
gi|310866053|gb|ADP35422.1| DNA primase [Bifidobacterium bifidum PRL2010]
Length = 271
Score = 88.2 bits (217), Expect = 4e-15, Method: Composition-based stats.
Identities = 36/207 (17%), Positives = 72/207 (34%), Gaps = 11/207 (5%)
Query: 562 VIISETNENDEIN-AAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
VI E + ++ AA +K + GD + + F N+ +R+
Sbjct: 11 VITDENDTGTFVDDAAALKSVITGDPFQLNRKFKAPRNVLFRGF-MIQCVNELPKLRDKS 69
Query: 621 DAWWRRYIVIPFDKPIANRDASF--AQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEV 678
++ +RR +VIPFDK + + L + LE + + Y +D P+V
Sbjct: 70 ESMYRRLLVIPFDKRFQGCERKYIKDDYLNRQDVLEYVLYRVLAETDYYE----LDEPDV 125
Query: 679 CLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738
C ++ R D + + D+ L Y + ++ R +
Sbjct: 126 CSALLDDFRVANDPLRQFADEIFYAASWHLLPCKFLYDLYRHWFQRNQPSGR-MLGRNAF 184
Query: 739 TLNLKQKGFIGGIKREKIEKEWKSKRI 765
+++ G + E+ R+
Sbjct: 185 YESIE--GLAEEWGWQLQERVRVDGRM 209
>gi|331089475|ref|ZP_08338374.1| hypothetical protein HMPREF1025_01957 [Lachnospiraceae bacterium
3_1_46FAA]
gi|330404843|gb|EGG84381.1| hypothetical protein HMPREF1025_01957 [Lachnospiraceae bacterium
3_1_46FAA]
Length = 1352
Score = 88.2 bits (217), Expect = 5e-15, Method: Composition-based stats.
Identities = 62/331 (18%), Positives = 119/331 (35%), Gaps = 31/331 (9%)
Query: 447 TKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNK-AQRFIH 505
K+ Y +K P G+ S + L+S + E +G + G +K Q+F+
Sbjct: 122 DKKDYASKKLKYPLEAGDLSA-YNKLMSTLYSETE-RQKIEWAIGSIVCGESKKLQKFMV 179
Query: 506 IRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIIS 565
+ G G+GKST++N+I+ F Y + + + + +L + +V I
Sbjct: 180 LYGAAGTGKSTVLNIIQQLFEGYYSV-------FDAKALGSSSNSFALEAFKNNPLVAIQ 232
Query: 566 ETNENDEI-NAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWW 624
+ I + ++ + + MT + +TYS F F+ NK + + +
Sbjct: 233 HDGDLSRIEDNTRLNSLVSHELMTVNEKFKSTYSNRFKCF-LFMGTNKPVKITDAKSGLI 291
Query: 625 RRYI-VIPFDKPIANRD-ASFAQKLETKYTLEAKKWFLKGVKA-YISKG--LDVDIPEVC 679
RR + V P + ++ + +++E + A + Y+ D IP
Sbjct: 292 RRLVDVSPSGNKLGPKEYKTIMKQIEFELGAIAYH-----CQEIYLKNPGMYDDYIPIAM 346
Query: 680 LKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVT 739
L A D Y +D + + Y Y ++ S R
Sbjct: 347 LGAS------NDFYNFIVDSYHVFKRENGTTLKAAWEMYKTYCDEAK--VGYPFSQRVFK 398
Query: 740 LNLKQKGFIGGIKREKIEKEWKSKRIIKGLK 770
LK F +R +E + + G +
Sbjct: 399 EELKNY-FRDYKERFNMEDGSRVRSYYIGFR 428
>gi|322366581|gb|ADW95367.1| putative phage/plasmid primase [Staphylococcus cohnii]
Length = 545
Score = 88.2 bits (217), Expect = 5e-15, Method: Composition-based stats.
Identities = 36/212 (16%), Positives = 73/212 (34%), Gaps = 16/212 (7%)
Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538
++ + + + L K +R + + G +GKS + L+K F Y + + +
Sbjct: 217 DSDLQYFLFQHTAVLLTADTKRRRGLILYGAANNGKSVFIKLLKSFF---YSNDVISKTL 273
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKI---KQMTGGDCMTARLNYGN 595
+ L+G R++ E E +IN + K++ + + A G
Sbjct: 274 NE------IGGRFDKESLVGKRLMASDEIGE-AKINEKVVNDFKKLLSVEPIHADRK-GK 325
Query: 596 TYSESPASFTPFIVPNKHLFV-RNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLE 654
T E N L A RR +VIP + + D KL+++
Sbjct: 326 TQVEVTLDLKLVFNTNAVLSFPPAHAKALERRIVVIPCEYYVTKADPDLVVKLQSE-KKA 384
Query: 655 AKKWFLKGVKAYISKGLDVDIPEVCLKAKEEE 686
+ + K + ++ E + +
Sbjct: 385 IFLYLMYVYKQILDDDVEKIENERVTELSHDW 416
>gi|254480931|ref|ZP_05094177.1| Primase C terminal 2 family protein [marine gamma proteobacterium
HTCC2148]
gi|214038726|gb|EEB79387.1| Primase C terminal 2 family protein [marine gamma proteobacterium
HTCC2148]
Length = 657
Score = 87.9 bits (216), Expect = 6e-15, Method: Composition-based stats.
Identities = 55/273 (20%), Positives = 90/273 (32%), Gaps = 32/273 (11%)
Query: 17 GFKLIPLRLGDKRPQRLGKWEE----QLLSSEKIDKL----PACGFGFVCGVGEQPLYAF 68
GF ++P+ G KRP KW +LLS + + P V G +
Sbjct: 32 GFVVVPIIPGTKRPAI--KWRSDQGGRLLSRRSVARYWRKHPKYDVAIVVG---PRIIML 86
Query: 69 DIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEG-IKKKKT--TESTQGH 125
D D+ + + + L I + + L + +G I K ++S
Sbjct: 87 DADTPEAEARLHEIEAAHDL---TPKIIVRTSRGLHHYFGLADGVIAKADGLDSKSNPTG 143
Query: 126 LDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLV 185
+DI + P T K + +ED ++ + V+ + + P
Sbjct: 144 IDIRAGESLAIVP---PSTSKSFELCEAN---SLEDLGVVGQNFVDAIVR--NNGRKPAS 195
Query: 186 KDKKSIIPSKT-WTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSS 244
S P+ I LS + + +W V MAVHH T G
Sbjct: 196 PPATSTPPASLPAPITTLTNAEEARIQNLLSHLEPDLC---YQDWSHVGMAVHHATGGGQ 252
Query: 245 KGKEIARRWSKQGSTYDEE-NFNYKWDTFDFEE 276
G ++ +WS G Y + W F E
Sbjct: 253 IGLDLFDQWSSGGKKYIGRHDIQNAWKYFSTER 285
>gi|323485201|ref|ZP_08090552.1| hypothetical protein HMPREF9474_02303 [Clostridium symbiosum
WAL-14163]
gi|323401520|gb|EGA93867.1| hypothetical protein HMPREF9474_02303 [Clostridium symbiosum
WAL-14163]
Length = 1447
Score = 87.1 bits (214), Expect = 1e-14, Method: Composition-based stats.
Identities = 63/331 (19%), Positives = 118/331 (35%), Gaps = 31/331 (9%)
Query: 447 TKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNK-AQRFIH 505
K+ Y +K P G+ S + + SEE +G + G +K Q+F+
Sbjct: 122 NKKDYASKKLNYPLEAGDLSA--YEKLMSTLYSEEERTKIEWAIGSIVSGESKKLQKFMV 179
Query: 506 IRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIIS 565
+ G G+GKST++N+I+ F Y + + + + +L + +V I
Sbjct: 180 LYGAAGTGKSTVLNIIQQLFDGYYSV-------FDAKALGSSSNSFALEAFKTNPLVAIQ 232
Query: 566 ETNENDEI-NAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWW 624
+ I + ++ + + MT + +TYS F F+ NK + + +
Sbjct: 233 HDGDLSRIEDNTRLNSLVSHELMTVNEKFKSTYSNRFKCF-LFMGTNKPVKITDAKSGLI 291
Query: 625 RRYI-VIPFDKPIANRD-ASFAQKLETKYTLEAKKWFLKGVKA-YISK--GLDVDIPEVC 679
RR I V P + ++ + +++E + A + Y+ D IP
Sbjct: 292 RRLIDVSPSGNKLNPKEYKTIVKQVEFELGAIAYH-----CQEVYLGNPGRYDDYIPITM 346
Query: 680 LKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVT 739
L A D Y ID + + + Y Y + S R
Sbjct: 347 LGAS------NDFYNFIIDSYHVFKKENGTTLKAAWEMYKTYCDDAK--VGFPFSQRVFK 398
Query: 740 LNLKQKGFIGGIKREKIEKEWKSKRIIKGLK 770
LK F +R ++ + + G +
Sbjct: 399 EELKNY-FHDFQERFNLDDGTRVRSYYIGFR 428
>gi|220915119|ref|YP_002490424.1| hypothetical protein Mnod_7767 [Methylobacterium nodulans ORS 2060]
gi|219952973|gb|ACL63358.1| hypothetical protein Mnod_7767 [Methylobacterium nodulans ORS 2060]
Length = 846
Score = 87.1 bits (214), Expect = 1e-14, Method: Composition-based stats.
Identities = 38/258 (14%), Positives = 77/258 (29%), Gaps = 30/258 (11%)
Query: 2 PVMQWKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLP---ACGFGFVC 58
W++ N ++ + ++ G+KRP + + ++ +++ G +
Sbjct: 15 SGQPWRDYGDALRTNKWRAVHIQHGEKRPLLKEWPQRGVPTAAEVETWQRPERASMGLIL 74
Query: 59 GVGE-----QPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEG- 112
G + + A D D A + E R+G K+ F K
Sbjct: 75 GPQPSLPPDEHVVAVDADVFTPAAATAVNEILERRLPGAPHRLGNPAKVGTRFVRTKTAD 134
Query: 113 -------------IKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWT--TPPHRF 157
T+ +++LG GQ V + HP Y W T
Sbjct: 135 GSEPVRRQGRRFIFDGAPDTKENHNRVELLGQGQQSVVHGTHP-CGVAYAWPSGTSIVEM 193
Query: 158 KVEDTPLLSEEDVEYLFK----FFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAF 213
+ PL+ +++ + + LV + + A
Sbjct: 194 HPSELPLIPIDELNAIIAECDTAMEAAGGVLVSGATFSRSGRNGGGADLTALVEANAEAL 253
Query: 214 LSCFGEEFYN-GSHDEWI 230
LS + + S + W+
Sbjct: 254 LSGLADTRNDISSRNRWV 271
Score = 59.7 bits (143), Expect = 2e-06, Method: Composition-based stats.
Identities = 34/185 (18%), Positives = 61/185 (32%), Gaps = 24/185 (12%)
Query: 457 GTPFVEGEPSQEFLDLVSGYF--ESEEVMDYFTRCVGMALLGGNKAQR---FIHIRGVGG 511
TP G + + + + + A ++ +G G
Sbjct: 486 STPAAAGSDWPTIRAYLRDVICAGDQSLFAWLMNWLAHAA--QRPHEKPGTAPIFKGPQG 543
Query: 512 SGKSTLMNLIKYAFGNQYVINAE-ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN-E 569
SGK+T NL++ F +V++AE ++ L + V+ E
Sbjct: 544 SGKTTFTNLLRAIFHPAHVVSAERPEALLGKHN----------AHLREALFVMADEAVFA 593
Query: 570 NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIV 629
D ++K M +T + S P+ + N+ +R DA RR+ V
Sbjct: 594 GDPAANNRLKAMVTDATLTIEPKGIDAVS-VPSFHRFVMTSNEDHVIRAEADA--RRWAV 650
Query: 630 IPFDK 634
FD
Sbjct: 651 --FDV 653
>gi|291336798|gb|ADD96333.1| primase 2 [uncultured organism MedDCM-OCT-S08-C700]
Length = 364
Score = 85.5 bits (210), Expect = 3e-14, Method: Composition-based stats.
Identities = 49/281 (17%), Positives = 84/281 (29%), Gaps = 46/281 (16%)
Query: 17 GFKLIP--LRLGDKRPQRLGKWEEQLLSSEKIDKLP----ACGFGFVCGVGEQPLYAFDI 70
G + + +KRP + W+ L ++ K + G G CG L D
Sbjct: 9 GLPKHWGFVAVKNKRPYQ-NDWQNNPLKQSQLFKELVAKRSTGIGVCCGTPSGGLLFLDH 67
Query: 71 DSKDEKTANTFKDTFEILHGTPI---VRIGQKPKILIPFRMNKEGIKKKKTTESTQG--- 124
D A + L P V G+ + I +++ ++ K KT + G
Sbjct: 68 D--GPSAAKILGEWGFSLSSLPPSWMVTSGRVGRFQIIYKVPEKYWSKIKTRKYQTGVKD 125
Query: 125 ------HLDILGCGQYFVAYNIHPKTKKEYTWTT--PPHRFKVEDTPLLSEEDVEYLFKF 176
+++ G + HP T Y W P + + PL + + L K
Sbjct: 126 EDGSVEQIELRWDGTQSIVSGSHPMTDG-YRWMDARSPRDLSIAEAPLAIIKKMMELNK- 183
Query: 177 FQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAV 236
K + + L + +D W+ + MA
Sbjct: 184 ------------------KKTPQIQTLNSDTDKARSLLQSINPSRLD-DYDIWLKIGMAA 224
Query: 237 HHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEI 277
H G S++ S Y KW +F +
Sbjct: 225 HSV--GDDSLLSDWENLSQKNSKYKSGECEKKWSSFKSSGV 263
>gi|262043412|ref|ZP_06016537.1| virulence-associated E family protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|259039238|gb|EEW40384.1| virulence-associated E family protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
Length = 729
Score = 85.5 bits (210), Expect = 3e-14, Method: Composition-based stats.
Identities = 94/625 (15%), Positives = 179/625 (28%), Gaps = 100/625 (16%)
Query: 23 LRLGDKRPQRLGKWEEQLLSSEKIDKL---PACGFGFVCGVGEQPLYAFDIDSKDEKTAN 79
L D+ + W E +++ + P G G G A D DS+D
Sbjct: 53 LYNRDRLATGIKDWTEHVVTEHDFARWSKEPDYGICVRTGNGW---LALDCDSEDVDVQQ 109
Query: 80 TFKDTFEILHGT--PIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVA 137
+D L G P R K L + + K+ E G +++L GQ FVA
Sbjct: 110 KIRDLLAQLLGVVPPRRRRANSNKCLYLLGVEGDFRKRIHRLEGELGIIELLANGQQFVA 169
Query: 138 YNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTW 197
H + W +D P ++ + +E L++ ++ V + +
Sbjct: 170 CGTH-SSGARIEWDNEL----PDDPPAVTTDQLETLWQQLADVLPVSVTTEAGSSKMRDR 224
Query: 198 TNNNNRQYTNREITAFLSCFGEEFYNGSH-DEWIPVVMAVHHETRGSSKGKEIARRWSKQ 256
+ E +L G +G++ + +I H T G +
Sbjct: 225 STFTP--GATDETAEYLDANGWTLLDGTNGERYIRCPFEDGHSTGGDPTST---VYFPAG 279
Query: 257 GSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYH-HGKLIPKGLLASRF-SDAYNKA 314
+ +D +F + GD T F + + L F D + +
Sbjct: 280 TAGFDLGHFKCLHASCAHRNDGDYLNAIGIRTDDFEDLTSTEVAEPLPLPAFERDKWGRI 339
Query: 315 MFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPE 374
+I + D ++ D +
Sbjct: 340 EATISNAAKAVVRPDFVD-----------------------IDIRFDQFRDEIMFAPAGS 376
Query: 375 DNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDG 434
+ P + R +E+ + + + + DS++ +L
Sbjct: 377 GQWQAFTDPDYARL----RITMEKRGFKAVGRELIRDVVLLAADEQPFDSATTWLN---- 428
Query: 435 ILDLETGQKVKPTK---ELYITK--STGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRC 489
G + Y T + TP+ + L
Sbjct: 429 ------GLEWDGVPRIEHFYHTHFGTADTPYTRAVSMYMWTAL----------------- 465
Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549
G L G KA + G G GKS+ + + + + + + E
Sbjct: 466 AGRVLEPGIKADMVPILVGRQGCGKSSGVEAL----------SPDPAFFTEISFAEKDD- 514
Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR---LNYGNTYSESPASFTP 606
L R M R+V +E E +N +++ + T Y ++ P
Sbjct: 515 --DLARKMRGRLV--AEIGELRGLNTKELESIKAFVTRTHENWIPKYREFATQFPRRLVF 570
Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIP 631
N+ F+ + RR++ +
Sbjct: 571 IGTTNEDEFLADKTGN--RRWLPVE 593
>gi|331019769|gb|EGH99825.1| bifunctional DNA primase/polymerase [Pseudomonas syringae pv.
lachrymans str. M302278PT]
Length = 897
Score = 85.2 bits (209), Expect = 4e-14, Method: Composition-based stats.
Identities = 130/862 (15%), Positives = 235/862 (27%), Gaps = 195/862 (22%)
Query: 17 GFKLIPLRLGDKRPQRLGKWE------EQLLSSEKIDKLPACGFGFVCGVGE-------- 62
F L+P++ G+K P+ G + + ++ K P G V G
Sbjct: 20 NFALVPIQPGEKGPKGRGWNQPGKYIVDPAMAEAFWTKNPNHNLGVVLGPSRVCSLDVDD 79
Query: 63 --------QPLYAFDIDSKD---EKTAN---TFKDTFEILHGTPIVR-----------IG 97
L D+D+ F+ F++ G + R G
Sbjct: 80 VQWTRFVLYELLGVDLDALALTFPTVVGNPLRFRVLFQVPEGLELTRHSLSWPNENDPDG 139
Query: 98 QKPKILIP----------------FRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIH 141
K K ++ +R + E K+ E G + Q + +IH
Sbjct: 140 SKHKSIMLKANAAREAGDTAREALYRADAEQYKRFTVFELRAGLV------QDVLPPSIH 193
Query: 142 PKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFF------QEITVPLVKDKK------ 189
P T + YTW TPP P+L + + + + L KD K
Sbjct: 194 PGTGQPYTWRTPP---DASGLPVLIGDLLNVWNNWDVFKRGAEAACPWLPKDAKPTGKQK 250
Query: 190 ---------------------------------SIIPSKTW----TNNNNRQYTNREITA 212
W ++ T E
Sbjct: 251 PKPKPAPAGGKRPSVIDEFNNCHDVEEILRSHGYTKRGGKWLYPQSSTGLPGITVAEGKV 310
Query: 213 FLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTF 272
+ + NG ++ V + H S KE AR Q + +
Sbjct: 311 YSHHAADPLANGHQNDAFEVFCLLEHGGDQSKAVKEAARMLGMQSTRPSASDLPPA---- 366
Query: 273 DFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKA 332
E D + P G + F++ + ++ D
Sbjct: 367 -PTEGSDQSDAAEPAA---VSDAAPAPDGGAGEELTIEQVLRRFALVEGTTHVWDFDKSR 422
Query: 333 WYKK-------DKNNVYIW------SLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKN 379
KK K +W L D I + L P +
Sbjct: 423 AMKKSAFEARVGKPIAKLWLDATDKKLIADDQVKDIEQARKMAGKKGGALGMRPTERYVY 482
Query: 380 SKSPRFWFNTDYRRQNVEENSKAKSTAQSL-----EAGSIFSITSDLLD----SSSR-FL 429
+ ++ + +R+ E K + + + D ++
Sbjct: 483 IDGTKDVWDREKKRRIAEGAVKMALGDTYALWLNSSERRVVDVEHIVFDPTMTKDPSIYI 542
Query: 430 GEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMD-YFTR 488
DG L LE P + L+S +E + TR
Sbjct: 543 NTFDG-LPLE-------------------PVNDDAACANLRWLISFLCNHDEAAALWLTR 582
Query: 489 CVGMAL--LGGNKAQRFIHIRGVGGSGKST-LMNLIKYAFGNQYVINAEASDIMQNRPPE 545
+ L LG + + GSGKS + +G QY + + N
Sbjct: 583 WLAYPLQHLGAKMDTAVLMHSTMEGSGKSLLFADTFGALYG-QYAATVGQTQLESNFNAW 641
Query: 546 AGKANPSLIRLMGSRIVIISET-NENDEINA-AKIKQMTGGDCMTARLNYGNTYSESPAS 603
+ + E + + N KIK + G + + N + E+
Sbjct: 642 QSR----------KMWAVFEEVVSRDQRYNQVGKIKHLVTGKTVRMESKFINGWEEA-NH 690
Query: 604 FTPFIVPNKHLF--VRNPDDAWWRRYIVI-PFDKPIANRDASFAQKLETKYTLEAKKWFL 660
+ N+ L + + D RR +V+ P + R + ++LE W L
Sbjct: 691 MNAVFLSNEILPWPISDSD----RRMLVMWPMETLPIARQKAIGRELENGGVAALYGWLL 746
Query: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLW--EESHSLAKSY 718
+ ++ + R G T+ ++ ++G LW S L +
Sbjct: 747 RVDLGDFNERTRPPSTASRERLVALSRAGWQTF-LYLWRYGELGRGLWGVCLSTDLYALF 805
Query: 719 SEYREQELNYDRKRISTRTVTL 740
E+ ++ + +S +L
Sbjct: 806 LEWCQRNKEH---VMSQTKFSL 824
>gi|254517351|ref|ZP_05129408.1| Primase C terminal 2 family protein [gamma proteobacterium NOR5-3]
gi|219674189|gb|EED30558.1| Primase C terminal 2 family protein [gamma proteobacterium NOR5-3]
Length = 703
Score = 85.2 bits (209), Expect = 4e-14, Method: Composition-based stats.
Identities = 53/277 (19%), Positives = 95/277 (34%), Gaps = 31/277 (11%)
Query: 8 EQAKQAIHNGFKLIPLRLGDKRPQ-RLGKWEEQLLSSEKI----DKLPACGFGFVCGVGE 62
A GF IPLR G K + W E LS EKI +K P +
Sbjct: 8 TAALDLFRRGFTPIPLRRGTKATAVKWDPWVED-LSEEKIRHHFNKYPNHELAVLL---N 63
Query: 63 QPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPF--RMNKEGIKKKKTTE 120
L D D+ D +A + TP + + + + R + K +
Sbjct: 64 DELLVLDADTPDAVSALH--QLLKSYEITPTLSVNSA-RGCHVYLRRASGTYAKSDAPNK 120
Query: 121 ST-QGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQE 179
+DI G+ A+ P T K +V D P + + ++ ++
Sbjct: 121 DANPAAIDIK-TGRAITAFP--PSTGKS---IDVDEIERVSDLPEVDQVFIDA---VYRH 171
Query: 180 ITVPLVKDKKSIIPSKTWT---NNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAV 236
+ P T +++ ++ I L+ + + +W+ + +A+
Sbjct: 172 NGRDAPRPLSKQTPPATVLVPLSSSELEHKRTRIAELLAHIDPD---TGYHDWLRIGIAI 228
Query: 237 HHETRGSSKGKEIARRWSKQGSTYDE-ENFNYKWDTF 272
+ E G+ G ++ WS +G+ Y KW F
Sbjct: 229 YVELEGAPVGFQLFDEWSAKGTKYPGTAALQDKWGKF 265
>gi|218442267|ref|YP_002380595.1| primase [Cyanothece sp. PCC 7424]
gi|218175408|gb|ACK74138.1| Primase 2 [Cyanothece sp. PCC 7424]
Length = 1287
Score = 85.2 bits (209), Expect = 4e-14, Method: Composition-based stats.
Identities = 57/328 (17%), Positives = 102/328 (31%), Gaps = 64/328 (19%)
Query: 18 FKLIPLRLGDKRPQRLGKWEEQLLSSEK-----------------IDKLPACGFGFVCG- 59
L+PL K+P G W+ + ++ + I K+ GFG + G
Sbjct: 40 LALVPLN-NKKQPLGDG-WQNRPFTATQLIEAIHNGGVEVPIKGEIKKIQPQGFGVITGN 97
Query: 60 -----VGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRI--------GQ------KP 100
G L A D+D A+ E+ P+ G+ P
Sbjct: 98 SLTTQQGTYTLMAVDLD-----GASATDKMLELSRSKPLPPTVAFTSTLPGRCQYLFLVP 152
Query: 101 KILI-PFRMNKEGIKKKKTTESTQGHLDILGCG-QYFVAYNIHPKTKKEYTWTTPPHRFK 158
+ R K + +++ Q + ++HP T + Y W
Sbjct: 153 EKFKNLIRTKKIKTGVV-GDDGKPEQIELRYSNLQSVLPPSVHPDTGQ-YHWLEG---CA 207
Query: 159 VEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFG 218
+++ + D L + + + L + S NN+N+Q+++ +
Sbjct: 208 IDELEIALAPDWI-LEQMLIDKSPLLPLSPPPRLSSTAQKNNSNKQWSDIDFAISYLNAL 266
Query: 219 EEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIG 278
F +D+W+ V MA+H WS+ + Y + KW +F G
Sbjct: 267 SSFRADDYDDWLAVGMALHSV---DDSLLSEWDNWSRTSNKYKPGDCEKKWKSF-SRGGG 322
Query: 279 DTAKKRSTFTSLFYHHGKLIPKGLLASR 306
H KL R
Sbjct: 323 VKL-------GTLAHMAKL-DGWTFPKR 342
>gi|241895004|ref|ZP_04782300.1| conserved hypothetical protein [Weissella paramesenteroides ATCC
33313]
gi|241871722|gb|EER75473.1| conserved hypothetical protein [Weissella paramesenteroides ATCC
33313]
Length = 576
Score = 84.4 bits (207), Expect = 7e-14, Method: Composition-based stats.
Identities = 55/358 (15%), Positives = 112/358 (31%), Gaps = 34/358 (9%)
Query: 385 FWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKV 444
FW R V+ S+++S A L+S+ L G L+L T +
Sbjct: 177 FWLTLLTRILGVKATSQSESETLIALAKIAHRFDFAKLNSTYTTLVT--GDLNLSTFELE 234
Query: 445 KPTKELYITKSTGTPFVEGEP--SQEFLDLVSG-YFESEEVMDYFTRCVGMALLGGNKAQ 501
+ + + G + EE + + + LL N +
Sbjct: 235 PFDARHMTSYQLNLTPDLDAQVMPPAWQKYLDGQWKNDEETVTFILEWLATHLLLQNPGK 294
Query: 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMG--- 558
+ GGSGK+ L++ I+ Q + + + E L G
Sbjct: 295 VL-FLYSPGGSGKTLLLDAIRAMLSPQLTASVPTYQLDRQFGLE--------YLLQGDRQ 345
Query: 559 --SRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV 616
R ++ E N I+ +KIK++ + + + P + N
Sbjct: 346 TVVRANLVDENAINKGIDWSKIKRLADVNAVMNVDRKNTSSLLLPMNVQCTFAMNTLDVQ 405
Query: 617 RNPDD---AWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAKKWFLKGVKAYISKGL 671
N + A R+ ++ F+K + D +++ + ++ +K KG
Sbjct: 406 TNNVETTYAVQRKVCLLRFEKSFSKEEMDEDLGRRMIEELPQ-LGGLLIQTLKE--MKGR 462
Query: 672 DVDIPE---VCLKAKEEERQ----GTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYR 722
D +P+ L K+ ++ + + L ++ +Y
Sbjct: 463 DDMVPKESHKMLADKKAWFASMTQDNSPVASFATERLQQKNDESVTRIELLDAFVDYC 520
>gi|251793968|ref|YP_003008700.1| bacteriophage P4 DNA primase [Aggregatibacter aphrophilus NJ8700]
gi|247535367|gb|ACS98613.1| bacteriophage P4 DNA primase [Aggregatibacter aphrophilus NJ8700]
Length = 130
Score = 84.4 bits (207), Expect = 7e-14, Method: Composition-based stats.
Identities = 24/125 (19%), Positives = 48/125 (38%), Gaps = 2/125 (1%)
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPF-VEGEPSQEFLDLVSGYFESEE 481
+ S L ++G+L+ T + +E ++T + + E + F ++ + +E
Sbjct: 3 EQSKELLAFKNGVLNRSTLEFSPHCRENWLTSFIPHNYTNQTENTPHFDSWLNFVADGKE 62
Query: 482 -VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540
+ L + Q F + G GGSGKS + G Q + D+ +
Sbjct: 63 DKKQAILSALYAILTNRHNWQLFFEVTGDGGSGKSVFAQIATMLAGEQNTESGRLVDLDE 122
Query: 541 NRPPE 545
R +
Sbjct: 123 PRGRK 127
>gi|228475778|ref|ZP_04060496.1| conserved hypothetical protein [Staphylococcus hominis SK119]
gi|228270560|gb|EEK11995.1| conserved hypothetical protein [Staphylococcus hominis SK119]
Length = 539
Score = 84.4 bits (207), Expect = 8e-14, Method: Composition-based stats.
Identities = 43/279 (15%), Positives = 97/279 (34%), Gaps = 22/279 (7%)
Query: 418 TSDLLDSSSRFLGEQDGILDLETGQKVKPT----KELYITKSTGTPFVEGEPSQE-FLDL 472
+ L + ++G + + DL T Q VK + + + S T V + F
Sbjct: 151 DVEELVENEHYIGCGENMFDLNTFQVVKNSIDIFPKTRLNLSLSTNDVITDTIPPYFNQY 210
Query: 473 VSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVI 531
+ +++ + + + L K +R + + G +GKS + L+K F ++ ++
Sbjct: 211 MLQLANYDDDLQYFLFQHTAVLLTADTKYRRGLILYGGAKNGKSVYIELVKSFFYSKDIV 270
Query: 532 NAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKI---KQMTGGDCMT 588
+ +++ E+ L+ ++ E + I + K++ + M
Sbjct: 271 SKPLNELEGRFDKES---------LIDKSLMASHEIGQ-SRIQEKIVNDFKKLLSVESMH 320
Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFV-RNPDDAWWRRYIVIPFDKPIANRDASFAQKL 647
G T E N L A RR +IP + + D S KL
Sbjct: 321 VDRK-GKTQVEVILDLKLIFSTNAILNFPPEHAKALERRINIIPCEYYVEKADTSLIDKL 379
Query: 648 ETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEE 686
+++ E + + + + ++ + +
Sbjct: 380 QSE-KKEIFLYLMYVYQQIVKADIEYLENSRVTEITHDW 417
>gi|153815791|ref|ZP_01968459.1| hypothetical protein RUMTOR_02036 [Ruminococcus torques ATCC 27756]
gi|145846816|gb|EDK23734.1| hypothetical protein RUMTOR_02036 [Ruminococcus torques ATCC 27756]
Length = 1354
Score = 84.4 bits (207), Expect = 8e-14, Method: Composition-based stats.
Identities = 62/343 (18%), Positives = 123/343 (35%), Gaps = 35/343 (10%)
Query: 447 TKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNK-AQRFIH 505
K+ Y +K P G+ S + L+S + E +G + G +K Q+F+
Sbjct: 122 DKKDYASKKLKYPLEAGDLSA-YNKLMSTLYSETE-RQKIEWAIGSIVCGESKKLQKFMV 179
Query: 506 IRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIIS 565
+ G G+GKST++N+I+ F Y + + + + +L + +V I
Sbjct: 180 LYGAAGTGKSTVLNIIQQLFEGYYSV-------FDAKALGSSSNSFALEAFKNNPLVAIQ 232
Query: 566 ETNENDEI-NAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWW 624
+ I + ++ + + MT + +TYS F F+ NK + + +
Sbjct: 233 HDGDLSRIEDNTRLNSLVSHELMTVNEKFKSTYSNRFKCF-LFMGTNKPVKITDAKSGLI 291
Query: 625 RRYI-VIPFDKPIANRD-ASFAQKLETKYTLEAKKWFLKGVKA-YISKG--LDVDIPEVC 679
RR + V P + ++ + +++E + A + Y+ D IP
Sbjct: 292 RRLVDVSPSGNKLGPKEYKTIMKQIEFELGAIAYH-----CQEIYLKNPGMYDDYIPIAM 346
Query: 680 LKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVT 739
L A D Y +D + + Y Y ++ S R
Sbjct: 347 LGAS------NDFYNFIVDSYHVFKRENGTTLKAAWEMYKTYCDEAK--VGYPFSQRVFK 398
Query: 740 LNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDNS 782
LK F +R +E + + ++ E ++ +
Sbjct: 399 EELKNY-FRDYKERFNMEDGSRVRSYY----IRFRTEKFEEET 436
>gi|166197581|dbj|BAG06190.1| hypothetical protein [Staphylococcus aureus]
gi|221148470|gb|ACL99831.1| hypothetical protein [Staphylococcus pseudintermedius]
gi|238768495|dbj|BAH66807.1| hypothetical protein [Staphylococcus aureus]
gi|283469260|emb|CAQ48471.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
ST398]
gi|288964701|gb|ADC79458.1| hypothetical protein [Staphylococcus aureus]
Length = 547
Score = 84.0 bits (206), Expect = 9e-14, Method: Composition-based stats.
Identities = 64/405 (15%), Positives = 132/405 (32%), Gaps = 63/405 (15%)
Query: 418 TSDLLDSSSRFLGEQDGILDLETGQKVKPT----KELYITKSTGTPFVEGEPSQE-FLDL 472
+ L + R++G + + DL T Q VK + + + S T V + F
Sbjct: 151 DVEELVENERYIGCGENMFDLNTFQVVKNSIDIFPKTRLNLSLSTNDVITDKIPPYFKQY 210
Query: 473 VSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVI 531
+ +++ + + + L K +R + + G +GKS + L+K F ++ ++
Sbjct: 211 MLQLANYDDDLQYFLFQHTAVLLTADTKYRRGLILYGGAKNGKSVYIELVKSFFYSKDIV 270
Query: 532 NAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKI---KQMTGGDCMT 588
+ +++ E+ L+ ++ E + I + K++ + M
Sbjct: 271 SKPLNELEGRFDKES---------LIDKSLMASHEIGQ-SRIQEKIVNDFKKLLSVESMH 320
Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFV-RNPDDAWWRRYIVIPFDKPIANRDASFAQKL 647
G T E N L A RR +IP + + D S KL
Sbjct: 321 VDRK-GKTQVEVILDLKLIFSTNAILNFPPEHAKALERRINIIPCEYYVEKADTSLIDKL 379
Query: 648 ETKYTLEAKKWF----------LKGV---------KAYISKGLDVDIPEVCLKAKEEERQ 688
+++ ++ + +++ G + A ++
Sbjct: 380 QSEKKEIFLYLMYVYQQIVKADIEYLENSRVTEITHDWLNFGYEFVSSRSVSNANQKACI 439
Query: 689 GTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFI 748
+ +I + L K +E ++S++ + L Q F
Sbjct: 440 NL------LRKLIEIKSGSRIKVSELNKVINE---------EIKVSSQVI-KQLIQANFD 483
Query: 749 GGIKREKIEKEW-------KSKRIIKGLKLKPAFESVDDNSNIID 786
K W +K+ I + K S+D N NI D
Sbjct: 484 TQTKLYNGYDYWIDLGWKEANKKEIHDISEKDNIISLDKNENITD 528
>gi|288964715|gb|ADC79472.1| hypothetical protein [Staphylococcus aureus]
Length = 539
Score = 84.0 bits (206), Expect = 1e-13, Method: Composition-based stats.
Identities = 61/398 (15%), Positives = 128/398 (32%), Gaps = 57/398 (14%)
Query: 418 TSDLLDSSSRFLGEQDGILDLETGQKVKPT----KELYITKSTGTPFVEGEPSQE-FLDL 472
+ L + ++G + + DL T Q VK + + + S T V + F
Sbjct: 151 DVEELVENEHYIGCGENMFDLNTFQVVKNSIDIFPKTRLNLSLSTNDVITDKIPPYFKQY 210
Query: 473 VSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVI 531
+ +++ + + + L K +R + + G +GKS + L+K F ++ ++
Sbjct: 211 MLQLANYDDDLQYFLFQHTAVLLTADTKYRRGLILYGGAKNGKSVYIELVKSFFYSKDIV 270
Query: 532 NAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKI---KQMTGGDCMT 588
+ +++ E+ L+ ++ E + I + K++ + M
Sbjct: 271 SKPLNELEGRFDKES---------LIDKSLMASHEIGQ-SRIQEKIVNDFKKLLSVESMH 320
Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFV-RNPDDAWWRRYIVIPFDKPIANRDASFAQKL 647
G T E N L A RR +IP + + D S KL
Sbjct: 321 VDRK-GKTQVEVILDLKLIFSTNAILNFPPEHAKALERRINIIPCEYYVEKADTSLIDKL 379
Query: 648 ETKYTLEAKKWF----------LKGV---------KAYISKGLDVDIPEVCLKAKEEERQ 688
+++ ++ + +++ G + A ++
Sbjct: 380 QSEKKEIFLYLMYVYQQIVKADIEYLENSRVTEITHDWLNFGYEFVSSRSVSNANQKACI 439
Query: 689 GTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFI 748
+ I + L E+ D ++S++ + +L Q F
Sbjct: 440 NL------LRKLIAIKPGSRIKVSRL---------NEVIRDEIKVSSQVIN-DLVQANFN 483
Query: 749 GGIKREKIEKEWKSKRIIKGLKLKPAFESVDDNSNIID 786
+ K W K K S D+N N+ D
Sbjct: 484 VQSRLNNGYKYWVDL-GWKETDKKDDMISFDENENVTD 520
>gi|304379979|ref|ZP_07362708.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
ATCC BAA-39]
gi|269939555|emb|CBI47914.1| hypothetical protein SATW20_00320 [Staphylococcus aureus subsp.
aureus TW20]
gi|304341559|gb|EFM07469.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus
ATCC BAA-39]
Length = 547
Score = 83.6 bits (205), Expect = 1e-13, Method: Composition-based stats.
Identities = 64/405 (15%), Positives = 132/405 (32%), Gaps = 63/405 (15%)
Query: 418 TSDLLDSSSRFLGEQDGILDLETGQKVKPT----KELYITKSTGTPFVEGEPSQE-FLDL 472
+ L + R++G + + DL T Q VK + + + S T V + F
Sbjct: 151 DVEELVENERYIGCGENMFDLNTFQVVKNSIDIFPKTRLNLSLSTNDVITDKIPPYFKQY 210
Query: 473 VSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVI 531
+ +++ + + + L K +R + + G +GKS + L+K F ++ ++
Sbjct: 211 MLQLANYDDDLQYFLFQHTAVLLTADTKYRRGLILYGGAKNGKSVYIELVKSFFYSKDIV 270
Query: 532 NAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKI---KQMTGGDCMT 588
+ +++ E+ L+ ++ E + I + K++ + M
Sbjct: 271 SKPLNELEGRFDKES---------LIDKSLMASHEIGQ-SRIQEKIVNDFKKLLSVESMH 320
Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFV-RNPDDAWWRRYIVIPFDKPIANRDASFAQKL 647
G T E N L A RR +IP + + D S KL
Sbjct: 321 VDRK-GKTQVEVILDLKLIFSTNAILNFPPEHAKALERRINIIPCEYYVEKADTSLIDKL 379
Query: 648 ETKYTLEAKKWF----------LKGV---------KAYISKGLDVDIPEVCLKAKEEERQ 688
+++ ++ + +++ G + A ++
Sbjct: 380 QSEKKEIFLYLMYVYQQIVKADIEYLENSRVTEITHDWLNFGYEFVSSRSVSNANQKACI 439
Query: 689 GTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFI 748
+ +I + L K +E ++S++ + L Q F
Sbjct: 440 NL------LRKLIEIKSGSRIKVSELNKVINE---------EIKVSSQVIN-QLIQANFD 483
Query: 749 GGIKREKIEKEW-------KSKRIIKGLKLKPAFESVDDNSNIID 786
K W +K+ I + K S+D N NI D
Sbjct: 484 TQTKLYNGYDYWIDLGWKEANKKEIHDISEKDNIISLDKNENITD 528
>gi|14021049|dbj|BAB47673.1| hypothetical protein [Staphylococcus aureus]
gi|27529899|dbj|BAC53836.1| hypothetical protein [Staphylococcus aureus]
gi|205825353|dbj|BAG71444.1| hypothetical protein [Staphylococcus aureus]
gi|288551796|gb|ADC53392.1| hypothetical protein [Staphylococcus aureus]
gi|329315336|gb|AEB89749.1| hypothetical protein SAT0131_02878 [Staphylococcus aureus subsp.
aureus T0131]
Length = 547
Score = 83.6 bits (205), Expect = 1e-13, Method: Composition-based stats.
Identities = 64/405 (15%), Positives = 132/405 (32%), Gaps = 63/405 (15%)
Query: 418 TSDLLDSSSRFLGEQDGILDLETGQKVKPT----KELYITKSTGTPFVEGEPSQE-FLDL 472
+ L + R++G + + DL T Q VK + + + S T V + F
Sbjct: 151 DVEELVENERYIGCGENMFDLNTFQVVKNSIDIFPKTRLNLSLSTNDVITDKIPPYFKQY 210
Query: 473 VSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVI 531
+ +++ + + + L K +R + + G +GKS + L+K F ++ ++
Sbjct: 211 MLQLANYDDDLQYFLFQHTAVLLTADTKYRRGLILYGGAKNGKSVYIELVKSFFYSKDIV 270
Query: 532 NAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKI---KQMTGGDCMT 588
+ +++ E+ L+ ++ E + I + K++ + M
Sbjct: 271 SKPLNELEGRFDKES---------LIDKSLMASHEIGQ-SRIQEKIVNDFKKLLSVESMH 320
Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFV-RNPDDAWWRRYIVIPFDKPIANRDASFAQKL 647
G T E N L A RR +IP + + D S KL
Sbjct: 321 VDRK-GKTQVEVILDLKLIFSTNAILNFPPEHAKALERRINIIPCEYYVEKADTSLIDKL 379
Query: 648 ETKYTLEAKKWF----------LKGV---------KAYISKGLDVDIPEVCLKAKEEERQ 688
+++ ++ + +++ G + A ++
Sbjct: 380 QSEKKEIFLYLMYVYQQIVKADIEYLENSRVTEITHDWLNFGYEFVSSRSVSNANQKACI 439
Query: 689 GTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFI 748
+ +I + L K +E ++S++ + L Q F
Sbjct: 440 NL------LRKLIEIKSGSRIKVSELNKVINE---------EIKVSSQVIN-QLIQANFD 483
Query: 749 GGIKREKIEKEW-------KSKRIIKGLKLKPAFESVDDNSNIID 786
K W +K+ I + K S+D N NI D
Sbjct: 484 TQTKLYNGYDYWIDLGWKEANKKEIHDISEKDNIISLDKNENITD 528
>gi|307149700|ref|YP_003891008.1| primase 2 [Cyanothece sp. PCC 7822]
gi|306986766|gb|ADN18643.1| Primase 2 [Cyanothece sp. PCC 7822]
Length = 1199
Score = 83.6 bits (205), Expect = 1e-13, Method: Composition-based stats.
Identities = 76/502 (15%), Positives = 152/502 (30%), Gaps = 85/502 (16%)
Query: 18 FKLIPLRLGDKRPQRLGKWEEQLLSSEK-----------------IDKLPACGFGFVCGV 60
L+PL +K+P G W+ + ++ + I K+ GFG + G
Sbjct: 22 LALVPLN-NNKQPLGDG-WQNRPYTATQLIEAITTGGVAVPIKGEIKKIQLQGFGVITGT 79
Query: 61 G------EQPLYAFDIDSKDEKTANTFKDTFEILHGTPI--------VRIGQ------KP 100
L A D+D A+ E+ P+ R G+ P
Sbjct: 80 SLTREHETYTLMAVDLD-----GASATNKMLELSGSNPLPPTVAFTSTRPGRCQYLFLVP 134
Query: 101 KILI-PFRMNKEGIKKKKTTESTQGHLDILGCG-QYFVAYNIHPKTKKEYTWTTPPHRFK 158
+ L R K + +++ Q + ++HP T + Y W
Sbjct: 135 EKLKNLIRTKKIKTGVV-GDDGKPEQIELRYSNLQSVLPPSVHPTTGQ-YHWVEG---CA 189
Query: 159 VEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREIT--AFLSC 216
+++ + D L + F + + P + T+ + I+ LS
Sbjct: 190 IDEIEIALAPDWI-LEQMFIDKSSPSSPALNLSYTTHTYNRGKQWSDIDFAISYLNALSP 248
Query: 217 FGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEE 276
F + +D+W+ V MA+H WS+ S Y + KW +F
Sbjct: 249 FRAD----DYDDWVAVGMALHSV---DDSLLTEWDNWSRSSSKYKPGDCEKKWKSF-SRG 300
Query: 277 IGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKK 336
G H KL + + + + L + D +
Sbjct: 301 GGVQL-------GTLAHLAKL-DGWTFPRKNTSLASPVKKPSSNQSIALTSTDNE---TT 349
Query: 337 DKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNV 396
+ S T + S+ + + ++ + ++ E+ N+ + + Q +
Sbjct: 350 VTGDTLSKSDTPNPQLLSVADTVTAVTAILKLGLKDYEEQNELDLLQSYSTFSKAAYQQL 409
Query: 397 EENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKST 456
+ D ++ + + LDL+ + + P ++I ++
Sbjct: 410 VSAIRCSEDVTQ----------PSDTDRLNQLVNWHNATLDLK--KIIPPLAPVFIHDAS 457
Query: 457 GTPFVEGEPSQEFLDLVSGYFE 478
Q FL V
Sbjct: 458 VLNIDPISLWQYFLPTVLSLAG 479
>gi|332360063|gb|EGJ37877.1| virulence-associated protein E [Streptococcus sanguinis SK1056]
Length = 546
Score = 83.6 bits (205), Expect = 1e-13, Method: Composition-based stats.
Identities = 44/295 (14%), Positives = 102/295 (34%), Gaps = 50/295 (16%)
Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ--------EFLDLVSG 475
+ +R+ + + + +TG+ + + + + ++ E+L +
Sbjct: 168 ADNRYTALGNLLYNAKTGETEPFSPQKLVIRKIDCNYIADAKEPNIKGWKVTEWLKNL-- 225
Query: 476 YFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLM-------------NLIK 522
+ +E+ + + ++ G + K+ LIK
Sbjct: 226 FGGDDELYRMALQIIKASVTGESL--------------KNVFWLLGKGGTGKGTFQELIK 271
Query: 523 YAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI-NAAKIKQM 581
G Q V N + +++ ++R + L+G +VI + +I + + +
Sbjct: 272 NLVGAQNVANLKINEVNKSRFETSV--------LVGKTVVIGDDVQVRVKIKDVSTFFSL 323
Query: 582 TGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDA 641
T GD + YS + T N + DA RR+ ++PF A +
Sbjct: 324 TTGDPIKIEEKGKTPYSVN-LKMTIIQSSNGLPIINGDSDAIGRRFRILPFKGGFAGK-V 381
Query: 642 SFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAW 696
+ A K + E ++ L A +K P+ KA + ++ + ++
Sbjct: 382 NPAIKDDYICRREVLEYLL--CLALNTKTDLKLNPQASQKAVYDFQEEVNEVVSF 434
>gi|188496353|ref|ZP_03003623.1| conserved hypothetical protein [Escherichia coli 53638]
gi|188491552|gb|EDU66655.1| conserved hypothetical protein [Escherichia coli 53638]
gi|323171853|gb|EFZ57497.1| nucleoside triphosphatase, D5 family [Escherichia coli LT-68]
Length = 241
Score = 83.2 bits (204), Expect = 2e-13, Method: Composition-based stats.
Identities = 31/214 (14%), Positives = 74/214 (34%), Gaps = 40/214 (18%)
Query: 554 IRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKH 613
+++GSR++++++ + IK++TGGD + Y ++ + + N +
Sbjct: 11 AQVVGSRLIVLADQPKYTG-EGTGIKKITGGDPVEINPKYEKRFTAVIRA--VVLATNNN 67
Query: 614 LFV-RNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKG 670
+ RR ++ FD + A +D +K+ + + ++
Sbjct: 68 PMIFTERAGGVARRRVIFRFDNIVNEAEKDRELPEKIAAEIPVIIRRLLA---------- 117
Query: 671 LDVDIPEVCLKAKEEERQG---------TDTY------QAWIDDC--CDIGENL----WE 709
+ PE E+R G TD ++++ +G +
Sbjct: 118 -NFADPEKARALLLEQRDGDEALAIKQQTDPVIEFCQFLNFLEEARGLMMGGGGDSVKYT 176
Query: 710 ESHSLAKSYSEYREQELNYDRKRISTRTVTLNLK 743
+SL + Y + K ++ +K
Sbjct: 177 TRNSLYRVYLAFMAYAGRT--KPLNVNDFGKAMK 208
>gi|13928292|dbj|BAB46984.1| hypothetical protein [Staphylococcus aureus]
Length = 547
Score = 83.2 bits (204), Expect = 2e-13, Method: Composition-based stats.
Identities = 66/405 (16%), Positives = 130/405 (32%), Gaps = 63/405 (15%)
Query: 418 TSDLLDSSSRFLGEQDGILDLETGQKVKPT----KELYITKSTGTPFVEGEPSQE-FLDL 472
+ L + R++G + + DL T Q VK + + + S T V + F
Sbjct: 151 DVEELVENERYIGCGENMFDLNTFQVVKNSIDIFPKTRLNLSLSTNDVITDKIPPYFKQY 210
Query: 473 VSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVI 531
+ +++ + + + L K +R + + G +GKS + L+K F ++ ++
Sbjct: 211 MLQLANYDDDLQYFLFQHTAVLLTADTKYRRGLILYGGAKNGKSVYIELVKSFFYSKDIV 270
Query: 532 NAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKI---KQMTGGDCMT 588
+ +++ E+ L+ ++ E + I + K++ + M
Sbjct: 271 SKPLNELEGRFDKES---------LIDKSLMASHEIGQ-SRIQEKIVNDFKKLLSVESMH 320
Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFV-RNPDDAWWRRYIVIPFDKPIANRDASFAQKL 647
G T E N L A RR +IP + + D S KL
Sbjct: 321 VDRK-GKTQVEVILDLKLIFSTNAILNFPPEHAKALERRINIIPCEYYVEKADTSLIDKL 379
Query: 648 ETKYTLEAKKWF------LKGVKAYISK-------------GLDVDIPEVCLKAKEEERQ 688
+++ +K Y+ G + A ++
Sbjct: 380 QSEKKEIFLYLMYVYQQIVKADIEYLENSRVTEITHECVDFGYEFVSSRSVSNANQKACI 439
Query: 689 GTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFI 748
+ +I + L K +E ++S++ + L Q F
Sbjct: 440 NL------LRKLIEIKSGSRIKVSELNKVINE---------EIKVSSQVIN-QLIQANFD 483
Query: 749 GGIKREKIEKEW-------KSKRIIKGLKLKPAFESVDDNSNIID 786
K W +K+ I + K S+D N NI D
Sbjct: 484 TQTKLYNGYDYWIDLGWKEANKKEIHDISEKDNIISLDKNENITD 528
>gi|251811420|ref|ZP_04825893.1| conserved hypothetical protein [Staphylococcus epidermidis
BCM-HMP0060]
gi|251805049|gb|EES57706.1| conserved hypothetical protein [Staphylococcus epidermidis
BCM-HMP0060]
Length = 539
Score = 82.8 bits (203), Expect = 2e-13, Method: Composition-based stats.
Identities = 43/279 (15%), Positives = 97/279 (34%), Gaps = 22/279 (7%)
Query: 418 TSDLLDSSSRFLGEQDGILDLETGQKVKPT----KELYITKSTGTPFVEGEPSQE-FLDL 472
+ L + ++G + + DL T Q VK + + + S T V + F
Sbjct: 151 DVEELVENEHYIGCGENMFDLNTFQVVKNSIDIFPKTRLNLSLSTNDVITDKIPPYFKQY 210
Query: 473 VSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVI 531
+ +++ + + + L K +R + + G +GKS + L+K F ++ ++
Sbjct: 211 MLQLANYDDDLQYFLFQHTAVLLTADTKYRRGLILYGGAKNGKSVYIELVKSFFYSKDIV 270
Query: 532 NAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKI---KQMTGGDCMT 588
+ +++ E+ L+ ++ E + I + K++ + M
Sbjct: 271 SKPLNELEGRFDKES---------LIDKSLMASHEIGQ-SRIQEKIVNDFKKLLSVESMH 320
Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFV-RNPDDAWWRRYIVIPFDKPIANRDASFAQKL 647
G T E N L A RR +IP + + D S KL
Sbjct: 321 VDRK-GKTQVEVILDLKLIFSTNAILNFPPEHAKALERRVNIIPCEYYVEKADTSLIDKL 379
Query: 648 ETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEE 686
+++ E + + + + ++ + +
Sbjct: 380 QSE-KKEIFLYLMYVYQQIVKADIEYLENSRVTEITHDW 417
>gi|218884436|ref|YP_002428818.1| primase [Desulfurococcus kamchatkensis 1221n]
gi|218766052|gb|ACL11451.1| primase [Desulfurococcus kamchatkensis 1221n]
Length = 598
Score = 82.5 bits (202), Expect = 3e-13, Method: Composition-based stats.
Identities = 45/271 (16%), Positives = 92/271 (33%), Gaps = 28/271 (10%)
Query: 470 LDLVSGYFES--EEVMDYFTRCVGMALLGGNK--------AQRFIHIRGVGGSGKSTLMN 519
L V+G + E + + + VG +L G + + + G +GKST +
Sbjct: 277 LAYVAGASQDFIESRICFLVQMVGRMMLPGYRVNGVIVEKLKNVFALLGKTNTGKSTFLQ 336
Query: 520 LIKY--AFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA-A 576
G + + + + P + + L G+ +VI + ++ +
Sbjct: 337 DYTGDVVLGKENYRITDLARLTSLDPEDRLR---EFHDLRGTLMVIHPDIGRKSRVSDWS 393
Query: 577 KIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWW---RRYIVIPFD 633
I+ ++GGD + AR Y ++Y P SF I N + +A +R+ V
Sbjct: 394 IIRDVSGGDRIKARGLYKDSYEYYP-SFKIAISSNDPPPIGEEGEALKALLQRFKVFETW 452
Query: 634 KPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTY 693
+ + LE + + + L G + G A ++
Sbjct: 453 NTFTGKTLDI-EPLEAEVSRAVIAY-LYGAYLVLKAGWACTGVSDIEDAWLRY---SEPI 507
Query: 694 QAWIDDCCDIG---ENLWEESHSLAKSYSEY 721
+I + + G + L S++
Sbjct: 508 YRYIIEMIERGVLVRGGEINTGDLYSLLSKF 538
>gi|295096871|emb|CBK85961.1| Predicted P-loop ATPase and inactivated derivatives [Enterobacter
cloacae subsp. cloacae NCTC 9394]
Length = 728
Score = 82.1 bits (201), Expect = 3e-13, Method: Composition-based stats.
Identities = 93/631 (14%), Positives = 181/631 (28%), Gaps = 103/631 (16%)
Query: 23 LRLGDKRPQRLGK---------WEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSK 73
L+ K P R + W E +++ + +C A D DS+
Sbjct: 44 LKALGKTPSRYNRDRLVTGIAQWTEHVVTEHDFARWSKEPDYGICVRTGHGWLALDCDSE 103
Query: 74 DEKTANTFKDTFEILHGTPIVRIGQK--PKILIPFRMNKEGIKKKKTTESTQGHLDILGC 131
DE + T L G R + K L + + K+ G +++L
Sbjct: 104 DEDIQADIRKTLVQLLGELPPRRWRANSNKCLYLLAVEGDFRKRIHRLAGDMGIIELLAN 163
Query: 132 GQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSI 191
GQ FVA H + W ++ P+++ + +E L++ E V +
Sbjct: 164 GQQFVACGTH-SSGARIEWDGGL----PDEPPVITADQLETLWQRLAEQLPVSVTTEAGS 218
Query: 192 IPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSH-DEWIPVVMAVHHETRGSSKGKEIA 250
+ + E +L G +G++ + +I H T G
Sbjct: 219 TKMRDRSTFTP--GATDETAEYLDANGWTLLDGTNGERYIRCPFEDGHSTGGDPTST--- 273
Query: 251 RRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDA 310
+ + +++ +F + + GD F L
Sbjct: 274 VYFPGGTAGFEQGHFKCLHASCAHRDDGDFLNAIGIRNDDFEDLTSTEVAEPLP------ 327
Query: 311 YNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLS 370
L + W I + + A + V +
Sbjct: 328 --------------LPAFERDKW-------GRIEATISNAAKAVVRPDFVDIDIRFDQFR 366
Query: 371 EEPEDNNKNSKSPRFWFNTDYRRQNV--EENSKAKSTAQSLEAGSIFSITSDLLDSSSRF 428
+E S + + + DY R + E+ + + + + DS++ +
Sbjct: 367 DEIMFAPAGSGQWQAFTDADYARLRITMEKRGFKPVGRELIRDVVLLAADEQPFDSATTW 426
Query: 429 LGEQDGILDLETGQKVKPTKE---LYITK--STGTPFVEGEPSQEFLDLVSGYFESEEVM 483
L G + Y T + TP+ + L
Sbjct: 427 LN----------GLEWDGVPRIETFYHTHFGTADTPYTRAVSMYMWTAL----------- 465
Query: 484 DYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP 543
G L G KA + G G GKS+ + + + + + +
Sbjct: 466 ------AGRVLEPGVKADMVPILVGPQGCGKSSGVEAL----------SPDPAFFTEISF 509
Query: 544 PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR---LNYGNTYSES 600
E L R M R+V +E E +N +++ + T Y ++
Sbjct: 510 AEKDD---DLARKMRGRLV--AEIGELRGLNTKELESIKAFVTRTHENWIPKYREFATQF 564
Query: 601 PASFTPFIVPNKHLFVRNPDDAWWRRYIVIP 631
P N+ F+ + RR++ +
Sbjct: 565 PRRLVFVGTTNEDEFLADKTGN--RRWLPVE 593
>gi|313768154|ref|YP_004061585.1| hypothetical protein BpV1_155c [Bathycoccus sp. RCC1105 virus BpV1]
gi|312599761|gb|ADQ91782.1| hypothetical protein BpV1_155c [Bathycoccus sp. RCC1105 virus BpV1]
Length = 650
Score = 81.7 bits (200), Expect = 4e-13, Method: Composition-based stats.
Identities = 48/319 (15%), Positives = 114/319 (35%), Gaps = 33/319 (10%)
Query: 439 ETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE--------SEEVMDYFTRCV 490
E+ + + + K F E + + D+ + +F+ V +
Sbjct: 300 ESREFKNLDQTIVSCKYFDKEFTNYEDLENWYDIPTPFFQSVLEYQKFDSNVSKWMYVMG 359
Query: 491 GMALLGGN---KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAG 547
G G N Q ++G+ SGKSTL I F Y + + + N + G
Sbjct: 360 GRLCFGVNDIDTWQIIPFLKGIARSGKSTL---ITKVFRKFYNAD-DVRTLSNNVEKKFG 415
Query: 548 KANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNT--YSESPASFT 605
L + + + I E + ++ A+ + + G+ ++ + + + +
Sbjct: 416 -----LSSIYDAFMFIAPEVKGDLQLEQAEFQSIVSGEDVSIAVKHEKAKSFEWTTPG-- 468
Query: 606 PFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKA 665
+ N+ ++ + RR + F K + + D + KL+++ + + ++
Sbjct: 469 -ILGGNEVPNWKDNSGSVLRRILTWNFGKQVKDADPTLEYKLDSELPV-ILQKCIRAYLE 526
Query: 666 YISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCD-----IGENLWEESHSLAKSYSE 720
Y K D DI V + + ++ T + +++ G++L ++
Sbjct: 527 YAQKYADRDIWNVVPEYFKTVQKQVATVASTLENFMQSTGVKYGKDLCCPQKDFVALFNS 586
Query: 721 YREQELNYDRKRISTRTVT 739
+ + N + R T+
Sbjct: 587 HCQAN-NLGKPRF-TQDFY 603
>gi|313768370|ref|YP_004062050.1| hypothetical protein MpV1_167c [Micromonas sp. RCC1109 virus MpV1]
gi|312599066|gb|ADQ91090.1| hypothetical protein MpV1_167c [Micromonas sp. RCC1109 virus MpV1]
Length = 650
Score = 81.7 bits (200), Expect = 5e-13, Method: Composition-based stats.
Identities = 49/345 (14%), Positives = 125/345 (36%), Gaps = 39/345 (11%)
Query: 456 TGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVG-MAL-LGGN-KAQRFIHIRGVGGS 512
+ P+ F ++ EEV ++ G + +G Q +G+ S
Sbjct: 327 SHIEDWTKIPTPYFDSILKYQKFEEEVCNWAYVMGGRLCFDIGELDGWQIIPFFKGIARS 386
Query: 513 GKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDE 572
GKSTL I F Y N + + N + G L + + + I E +
Sbjct: 387 GKSTL---ITKVFKKFY-ENEDVGTLSNNIEKKFG-----LSAIKDAFMFIAPEVKGDLA 437
Query: 573 INAAKIKQMTGGDCMTARLNYGNTYSESPASFTP--FIVPNKHLFVRNPDDAWWRRYIVI 630
+ A+ + + G+ ++ + + + + N+ ++ + RR +
Sbjct: 438 LEQAEFQSIVSGEDVSVAVKNK---TAVSIEWKVPGVLGGNEVPNWKDNSGSVLRRILPW 494
Query: 631 PFDKPIANRDASFAQKLETKYTLEAKKWFLKGVK----AYISKGLDVDIPEVCLKAKEEE 686
F K + + D +KL + + K ++ Y ++ + +P+ + +++
Sbjct: 495 NFGKQVQDADPQLDEKLNMELPIILLK-CVRAYHDYSNKYRNRDIWNVVPKYFKQIQKQV 553
Query: 687 RQGTDTYQAWIDD-CCDIGENLWEESHSLAKSYSEYREQELNYDRK--------RISTRT 737
+ +++ +G++L+ ++++ ++ K S+R
Sbjct: 554 AMVASSLTNFLESTYVVLGDDLFVPQKDFVTKFNQHCKENNLGSHKFHQDFYAGPFSSRE 613
Query: 738 VTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDNS 782
+ + ++ + G + K++ II GL + + D++
Sbjct: 614 IEVRVETVKYKG--------RVCKNQPIIYGLDIVTDDLTYTDDN 650
>gi|283481673|emb|CAZ69789.1| putative nucleic acid independent nucleoside triphosphatase
[Emiliania huxleyi virus 99B1]
Length = 675
Score = 81.7 bits (200), Expect = 5e-13, Method: Composition-based stats.
Identities = 43/224 (19%), Positives = 87/224 (38%), Gaps = 32/224 (14%)
Query: 450 LYITKSTGTPFVEGEP----SQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKA----- 500
YI T F++ +P ++F +++ + + ++ L+G
Sbjct: 338 DYINNCTD--FMDIDPSVFKCRDFDNVLEYQKLTPDTIENI-----YGLIGRLFFETKQY 390
Query: 501 ---QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLM 557
Q + +GV GSGKS+++NLI F + I S+ SL +
Sbjct: 391 DDMQLLLFFKGVAGSGKSSVLNLISECF-DPEAIGILNSNCQDQ---------FSLEHIA 440
Query: 558 GSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE-SPASFTPFIVPNKHLFV 616
+ IVI E + N A ++Q G+ +T +Y + A F + N+
Sbjct: 441 DAHIVITYEAKRDFRFNQATLQQCVSGEGVTIVRKGEKSYDKKWTAPF--VMAGNELPGW 498
Query: 617 RNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFL 660
++ + RR +++PF+ + +D ++ K+ +
Sbjct: 499 KDAAGSMARRLVLVPFNHRVIEQDEELGDRMSKDILEYIPKFTI 542
>gi|73852933|ref|YP_294217.1| putative nucleic acid independent nucleoside triphosphatase
[Emiliania huxleyi virus 86]
gi|72415649|emb|CAI65886.1| putative nucleic acid independent nucleoside triphosphatase
[Emiliania huxleyi virus 86]
Length = 675
Score = 81.7 bits (200), Expect = 5e-13, Method: Composition-based stats.
Identities = 43/224 (19%), Positives = 87/224 (38%), Gaps = 32/224 (14%)
Query: 450 LYITKSTGTPFVEGEP----SQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKA----- 500
YI T F++ +P ++F +++ + + ++ L+G
Sbjct: 338 DYINNCTD--FMDIDPSVFKCRDFDNVLEYQKLTPDTIENI-----YGLIGRLFFETKQF 390
Query: 501 ---QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLM 557
Q + +GV GSGKS+++NLI F + I S+ SL +
Sbjct: 391 DDMQLLLFFKGVAGSGKSSVLNLISECF-DPEAIGILNSNCQDQ---------FSLEHIA 440
Query: 558 GSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE-SPASFTPFIVPNKHLFV 616
+ IVI E + N A ++Q G+ +T +Y + A F + N+
Sbjct: 441 DAHIVITYEAKRDFRFNQATLQQCVSGEGVTIVRKGEKSYDKKWTAPF--VMAGNELPGW 498
Query: 617 RNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFL 660
++ + RR +++PF+ + +D ++ K+ +
Sbjct: 499 KDAAGSMARRLVLVPFNHRVIEQDEELGDRMSKDILEYIPKFTI 542
>gi|313844134|ref|YP_004061797.1| hypothetical protein OlV1_165c [Ostreococcus lucimarinus virus
OlV1]
gi|312599519|gb|ADQ91541.1| hypothetical protein OlV1_165c [Ostreococcus lucimarinus virus
OlV1]
Length = 647
Score = 81.3 bits (199), Expect = 5e-13, Method: Composition-based stats.
Identities = 54/341 (15%), Positives = 120/341 (35%), Gaps = 29/341 (8%)
Query: 456 TGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVG-MAL-LGGN-KAQRFIHIRGVGGS 512
+ + P+ F ++ +EV ++ G + +G Q +G+ S
Sbjct: 324 SHVERWQDIPTPWFDSILKYQQFEDEVCNWAYVMGGRLCFDIGELDGWQIIPFFKGIARS 383
Query: 513 GKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDE 572
GKSTL I F Y N + + N + G L + S + I E +
Sbjct: 384 GKSTL---ITKVFKKFY-ENEDVGTLSNNIEKKFG-----LSAIKDSFMFIAPEVKGDLA 434
Query: 573 INAAKIKQMTGGDCMTARLNYGNTYSESPASFTP--FIVPNKHLFVRNPDDAWWRRYIVI 630
+ A+ + M G+ ++ + + +T + N+ ++ + RR +
Sbjct: 435 LEQAEFQSMVSGEDVSVAVKNK---TAVSIEWTVPGVLGGNEVPNWKDNSGSVLRRILPW 491
Query: 631 PFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDI----PEVCLKAKEEE 686
F K + + D +KL + + K +K Y +K D DI P+ K +++
Sbjct: 492 NFSKQVRDADPQLDEKLNRELPIILLK-CIKAYLDYSNKYRDKDIWNVVPDYFKKIQKQV 550
Query: 687 RQGTDTYQAWIDDCCDI-GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK 745
T +++ + G+ L+ + ++++ + N + + +
Sbjct: 551 AMVASTLHNFLESTNIVFGKELFVPQKLFIQVFNQHCQAN-NLGKPKF-NQDFYAG---- 604
Query: 746 GFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDNSNIID 786
F + E R+ + + V+++ D
Sbjct: 605 PFSSRDIEVREEVVNYKGRVYPRQPVVYGLDVVEESLGFTD 645
>gi|282892589|ref|ZP_06300862.1| hypothetical protein pah_c272o028 [Parachlamydia acanthamoebae str.
Hall's coccus]
gi|281497713|gb|EFB40082.1| hypothetical protein pah_c272o028 [Parachlamydia acanthamoebae str.
Hall's coccus]
Length = 420
Score = 81.3 bits (199), Expect = 6e-13, Method: Composition-based stats.
Identities = 26/136 (19%), Positives = 44/136 (32%), Gaps = 8/136 (5%)
Query: 411 AGSIFSITSDLLDSSSRFLGEQDGILDLETG------QKVKPTKELYITKSTGTPFVEGE 464
A I + +S + +GI +E + PT L T F
Sbjct: 272 ANGTIWIDGRQIPNSRYVISFPNGIFSIEDWLKDEKIALIPPTPSLLNTSCLDFNFDPNA 331
Query: 465 PSQ-EFLDLVSGY-FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIK 522
E+L + E E + +G L K Q+ + I G +GK T+ +++
Sbjct: 332 TEPKEWLKFLESLWSEDIESQNAIQEWMGYLLTQDTKHQKILLIVGPPRAGKGTIARILE 391
Query: 523 YAFGNQYVINAEASDI 538
G V +
Sbjct: 392 TLLGASNVAGPTLGSL 407
>gi|74835168|dbj|BAE44469.1| hypothetical protein [Salmonella enterica subsp. enterica serovar
Abortusequi]
Length = 160
Score = 80.5 bits (197), Expect = 1e-12, Method: Composition-based stats.
Identities = 26/138 (18%), Positives = 50/138 (36%), Gaps = 13/138 (9%)
Query: 524 AFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTG 583
G +A + R L+G ++ + E E + A +K +TG
Sbjct: 2 LAGEDNAASAPIETLESPRER---------AALIGFSLIRLPE-QEKWSGDGAGLKAITG 51
Query: 584 GDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDA 641
GD ++ Y + YS + V N + + RR +++ F + IA RD
Sbjct: 52 GDALSVDPKYKDAYSTHIPA-VILAVNNNPMRFSDRSGGVSRRRVILHFPEQIAPKERDP 110
Query: 642 SFAQKLETKYTLEAKKWF 659
K+ + + ++
Sbjct: 111 QLKNKIARELAVIVRQLM 128
>gi|172035639|ref|YP_001802140.1| hypothetical protein cce_0723 [Cyanothece sp. ATCC 51142]
gi|171697093|gb|ACB50074.1| hypothetical protein cce_0723 [Cyanothece sp. ATCC 51142]
Length = 732
Score = 80.2 bits (196), Expect = 1e-12, Method: Composition-based stats.
Identities = 60/324 (18%), Positives = 112/324 (34%), Gaps = 53/324 (16%)
Query: 16 NGFKLIPLRLGDKRPQ------RLGKWEEQLLSSEKIDK----LPACGFGFVCGVGEQPL 65
N ++ IP+ +K P G +++ L+ ++I + G G +
Sbjct: 27 NNWRFIPVD-KNKAPMTTKTFQATGWTKKEALTKQEIIRELCDYDVNAVGLALGKHSVNV 85
Query: 66 YAFDID------SKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGI-----K 114
A D D +E T + K+ R G+ K + ++++ + K
Sbjct: 86 VAIDHDGESCDKLIEELTGLSLKEALPSTVAFSSGRTGRYQK---LYSVSEDILNQLTNK 142
Query: 115 KKKTTESTQ----GHLDILGCGQYFVAYNIHPKTKKE-YTWTTPPHRFKVEDTPLLSEED 169
+ KT E + L+ G + HPKT+ Y W +++ TPL
Sbjct: 143 QIKTGEKDEDGKSEQLEFRVNGYSIIM-GFHPKTQSYSYHWLDGCSPQEIDITPL----- 196
Query: 170 VEYLFKFFQEITVPLVKDKKSIIPSKTWTNN---NNRQYTNREITAFLSCFGEEFYNGSH 226
+++ I + K K N N+ + LS F ++
Sbjct: 197 ----PEWWLNIWLNSEKTNKKEKKKSLSKINDIPNDLSSIISKCQNLLSQLKP-FRCDNY 251
Query: 227 DEWIPVVMAVHHETRG----SSKGKEIARRWSKQGSTYDEENFNYKWDTFDFE-----EI 277
D+W V MA+HHE S ++ WS+ + + + KW +FD +
Sbjct: 252 DDWNRVGMALHHEAGDDPILSELLLDLWTNWSQNSNKFKDGECATKWQSFDSNKDNTVTL 311
Query: 278 GDTAKKRSTFTSLFYHHGKLIPKG 301
G + ++L + K
Sbjct: 312 GTLVEWAKEDSNLPQQNSKNTLDD 335
>gi|330970611|gb|EGH70677.1| bifunctional DNA primase/polymerase [Pseudomonas syringae pv.
aceris str. M302273PT]
Length = 823
Score = 79.8 bits (195), Expect = 2e-12, Method: Composition-based stats.
Identities = 112/750 (14%), Positives = 206/750 (27%), Gaps = 144/750 (19%)
Query: 74 DEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQ 133
D + +L G + + +R + E K+ E G + Q
Sbjct: 62 DPDGSKH---RAIMLKANAAREAGDTAREAL-YRADAEQYKRFTVFELRAGLV------Q 111
Query: 134 YFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDV-------------EYLFKFFQEI 180
+ +IHP T + YTW TPP P+L + + E + +
Sbjct: 112 DVLPPSIHPGTGQPYTWRTPP---DASGLPVLISDLLNVWNNWDVFKRGAEAACPWLPKD 168
Query: 181 TVPLVKDKKSIIPSKTW------------------------------------TNNNNRQ 204
P K K P+ ++
Sbjct: 169 AKPTGKQKPKPKPALVGGRRPSVIDEFNNCHDVEEILRSHGYTKRGGKWLYPQSSTGLPG 228
Query: 205 YTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEEN 264
T E + + NG ++ V + H S KE AR Q + +
Sbjct: 229 ITVAEGKVYSHHAADPLANGHQNDAFEVFCLLEHGGDQSKAVKEAARMLGMQSTRPSASD 288
Query: 265 FNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHF 324
E DT + P G + F++ +
Sbjct: 289 LPPA-----PTEGSDTPDAAAPDAP---SEAAPAPDGGAGEELTIEQVLRRFALVEGTTH 340
Query: 325 LYTADTKAWYKK-------DKNNVYIW------SLTLDKITASIMNFLVSMKEDVFDLSE 371
++ D KK K +W L D+ I + L
Sbjct: 341 VWDFDKSRAMKKSAFEARVGKPIAKLWLDATDKKLIADEQVKDIEQARKMAGKKGGALGM 400
Query: 372 EPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSL-----EAGSIFSITSDLLD--- 423
P + + ++ + +R+ E K + + + D
Sbjct: 401 RPTERYVYIDGTKDVWDREKKRRIAEGAVKMALGDTYALWLNSSERRVVDVEHIVFDPTM 460
Query: 424 -SSSR-FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEE 481
++ DG L LE P + L+S +E
Sbjct: 461 TKDPSIYINTFDG-LPLE-------------------PVNDDAACANLRWLISFLCNHDE 500
Query: 482 VMD-YFTRCVGMAL--LGGNKAQRFIHIRGVGGSGKST-LMNLIKYAFGNQYVINAEASD 537
+ TR + L LG + + GSGKS + +G QY +
Sbjct: 501 AAALWLTRWLAYPLQHLGAKMDTAVLMHSTMEGSGKSLLFADTFGALYG-QYAATVGQTQ 559
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISET-NENDEINA-AKIKQMTGGDCMTARLNYGN 595
+ N + + E + + N KIK + G + + N
Sbjct: 560 LESNFNAWQSR----------KMWAVFEEVVSRDQRYNQVGKIKHLVTGKTVRMESKFIN 609
Query: 596 TYSESPASFTPFIVPNKHLF--VRNPDDAWWRRYIVI-PFDKPIANRDASFAQKLETKYT 652
+ E+ + N+ L + + D RR +V+ P + R + ++LE
Sbjct: 610 GWEEA-NHMNAVFLSNEILPWPISDSD----RRMLVMWPMETLPVARQKAIGRELENGGV 664
Query: 653 LEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLW--EE 710
W L+ ++ + R G T+ ++ ++G LW
Sbjct: 665 AALYGWLLRVDLGDFNERTRPPSTASRERLVALSRAGWQTF-LYLWRYGELGRGLWGVCL 723
Query: 711 SHSLAKSYSEYREQELNYDRKRISTRTVTL 740
S L + E+ ++ + +S +L
Sbjct: 724 STDLYALFLEWCQRNKEH---VMSQTKFSL 750
>gi|155371013|ref|YP_001426547.1| hypothetical protein ATCV1_Z066R [Acanthocystis turfacea Chlorella
virus 1]
gi|155124333|gb|ABT16200.1| hypothetical protein ATCV1_Z066R [Acanthocystis turfacea Chlorella
virus 1]
Length = 598
Score = 79.8 bits (195), Expect = 2e-12, Method: Composition-based stats.
Identities = 28/210 (13%), Positives = 66/210 (31%), Gaps = 31/210 (14%)
Query: 462 EGEPSQEFLD----LVSGYFESEEVMDYFTRCVGMALLGGN--------KAQRFIHIRGV 509
+ ++ D + ++ + + L+G Q G+
Sbjct: 327 DNTQYDDWFDIPTPHLDSVMNHQQWPKEVQMWL-LCLIGRVLYRTNEIDSWQVCPFFVGL 385
Query: 510 GGSGKSTL-MNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN 568
G+GKS L + +IK F + + + +V E
Sbjct: 386 AGTGKSLLVLKVIKQFF----------ETVDVGILSNNIERKFGISAFYDKMLVCAPEIR 435
Query: 569 ENDEINAAKIKQMTGGDCMTARLNYGNTYSE---SPASFTPFIVPNKHLFVRNPDDAWWR 625
+ I A+ + + G+ ++ + + + + P + N+ + + R
Sbjct: 436 NDLAIEQAEFQSIVSGEEISVAVKFQKAFLQEWDVP----IVLAGNEVPGWADAGGSIQR 491
Query: 626 RYIVIPFDKPIANRDASFAQKLETKYTLEA 655
R +V F +P+ D ++KL +
Sbjct: 492 RLVVFEFKQPVKEGDMKLSEKLYREMPNII 521
>gi|312599305|gb|ADQ91328.1| hypothetical protein BpV2_161c [Bathycoccus sp. RCC1105 virus BpV2]
Length = 648
Score = 79.8 bits (195), Expect = 2e-12, Method: Composition-based stats.
Identities = 43/286 (15%), Positives = 101/286 (35%), Gaps = 32/286 (11%)
Query: 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMG 558
Q ++G+ SGKSTL I F Y + + + N + G L +
Sbjct: 371 TWQVIPFLKGIARSGKSTL---ITKVFRKFYNAD-DVRTLSNNVEKKFG-----LSSIYD 421
Query: 559 SRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNT--YSESPASFTPFIVPNKHLFV 616
+ + I E + ++ A+ + + G+ ++ + + + S + N+
Sbjct: 422 AFMFIAPEVKGDLQLEQAEFQSIVSGEDVSIAVKHEKAKSFEWSTPG---ILGGNEVPNW 478
Query: 617 RNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIP 676
++ + RR + F K + + D KL+ + + + ++ Y K D DI
Sbjct: 479 KDNSGSVLRRILTWNFGKQVKDADPMLEYKLDAELPI-ILQKCIRAYLEYAQKYADRDIW 537
Query: 677 EVCLKAKEEERQGTDTYQAWIDDCCD-----IGENLWEESHSLAKSYSEYREQELNYDRK 731
V + + ++ T + +++ G+ L+ ++ + + N +
Sbjct: 538 NVVPEYFKTVQKQVATIASTLENFMQSTGVKYGKELFCPQKEFVALFNSHCQAN-NLGKP 596
Query: 732 RISTRTVT------LNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771
R T+ ++ + K ++ I GL +
Sbjct: 597 RF-TQDFYVGPFSQREIEVREVTLTYKGRNYPRQA----FIFGLDI 637
>gi|332088051|gb|EGI93176.1| hypothetical protein SB521682_2984 [Shigella boydii 5216-82]
Length = 753
Score = 78.6 bits (192), Expect = 4e-12, Method: Composition-based stats.
Identities = 97/632 (15%), Positives = 180/632 (28%), Gaps = 116/632 (18%)
Query: 26 GDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTF 85
G ++ + W +++ + +C + A D D D ++
Sbjct: 57 GQRKVVGIPDWANYVVTENDFARWSNEPDYGICVRTGDGVVALDCDINDAGMQEIVRNII 116
Query: 86 EILHGTPIVRIGQKP--KILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPK 143
G R + K L ++ + K+ E +++L GQ FVA HP
Sbjct: 117 LSCLGELPPRRWRADSHKCLYLIAVDGDYRKRGHRLEGENKQIELLAKGQQFVACGTHP- 175
Query: 144 TKKEYTWTTPPHRFKVEDTPL-LSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNN 202
+ W + PL ++ E +E L++ + + S T
Sbjct: 176 AGERIQW-----DCGLPGEPLKITSEQLESLWQRLADNLP--------VKDSYTAGAGRQ 222
Query: 203 RQYTNREITAFLSCFGEEFYNGSHDEWIPV-VMAVHHETRGSSKGKEIARRWSKQGSTYD 261
R LSC + D W+ + + GS + + R S+ +
Sbjct: 223 RD---------LSCVDPSATDDVAD-WLDANGWTLSVSSDGS-RNLKPFRDESEYSNGCS 271
Query: 262 EENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDA-----YNKAMF 316
E + Y E G +T L L G S F D +K F
Sbjct: 272 ETSIKYFPKGTGGFEQGHFKSMHNTDAGLT-DADWLEGYGYTQSLFEDLTVVEDGDKPEF 330
Query: 317 SIYKKG-------HFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDL 369
+ F+Y + L + M + S K +
Sbjct: 331 TDINTDMTAHFLERFIYVIEGDQ------------VCDLSRPPYQCMMDMKSFKNLMAPY 378
Query: 370 SEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFL 429
PE + + + + W ++R + + E + K AG I + + ++
Sbjct: 379 QFPPEGKGQPTPATKRWI--EHRHKKIAETTGYK-----PGAGRIIERFDGRFEINEFYM 431
Query: 430 GEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRC 489
+ + +K + FL+ ++ ++F
Sbjct: 432 P--------------EHPRTADTSKVS-----------TFLNHMAYLVPDAWQREFFIAR 466
Query: 490 VGMALLGGNKAQRFIH-------IRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542
+G + +R G G S LM G + N+
Sbjct: 467 LGWMV--QRPERRCPISILHVATAHGTGRGWVSQLME---RVLGPWNCARTRMKILCDNQ 521
Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINA--AKIKQMTGGDCMTARLNYGNTYSES 600
+ L + + I E END+ KI+ + YG+ +
Sbjct: 522 FHD---------YLYNTLLCTIDEVRENDKRYEVNDKIRDVLTEPRFEVNRKYGSKKTMD 572
Query: 601 PASFTPFIVPNKH--LFVRNPDDAWWRRYIVI 630
+ F N L + D RR V+
Sbjct: 573 IYTGFLF-YTNHFDALALPEED----RRIAVL 599
>gi|314055246|ref|YP_004063584.1| hypothetical protein OtV2_151 [Ostreococcus tauri virus 2]
gi|313575137|emb|CBI70150.1| hypothetical protein OtV2_151 [Ostreococcus tauri virus 2]
Length = 483
Score = 78.6 bits (192), Expect = 4e-12, Method: Composition-based stats.
Identities = 51/346 (14%), Positives = 115/346 (33%), Gaps = 39/346 (11%)
Query: 456 TGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGN--------KAQRFIHIR 507
+ + P+ F ++ +EV ++ + G Q +
Sbjct: 160 SHIERWQDIPTPWFDSVLKYQKFEDEVCNW-----AYVMGGRLCYDVGELDGWQVIPFFK 214
Query: 508 GVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISET 567
G+ SGKSTL I F Y N + + N + G L + S + I E
Sbjct: 215 GIARSGKSTL---ITKVFKKFY-ENEDVGTLSNNIEKKFG-----LSAIKDSFMFIAPEV 265
Query: 568 NENDEINAAKIKQMTGGDCMTARLNYGNT--YSESPASFTPFIVPNKHLFVRNPDDAWWR 625
+ + A+ + M G+ ++ + + + N+ ++ + R
Sbjct: 266 KGDLALEQAEFQSMVSGEDVSVAVKNKTAVSIEWNVPG---VLGGNEVPNWKDNSGSVLR 322
Query: 626 RYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDI----PEVCLK 681
R + F K + + D +KL + + K +K Y ++ + DI PE K
Sbjct: 323 RILAWNFSKQVRDADPQLDEKLNRELPIILLK-CVKAYLEYSNEYRNKDIWNVVPEYFKK 381
Query: 682 AKEEERQGTDTYQAWIDDCCDI-GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTL 740
+++ T +++ + G+ L+ + ++++ + N + + +
Sbjct: 382 IQKQVAMVASTLHNFLESTNIVFGKELFVPQKLFIQVFNQHCQAN-NLGKPKF-NQDFYA 439
Query: 741 NLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDNSNIID 786
F + E R + + V+++ D
Sbjct: 440 G----PFSSRDIEVREEVVNYKGRTYPKQPVIYGLDVVEESLGFTD 481
>gi|254431281|ref|ZP_05044984.1| Primase C terminal 2 family [Cyanobium sp. PCC 7001]
gi|197625734|gb|EDY38293.1| Primase C terminal 2 family [Cyanobium sp. PCC 7001]
Length = 901
Score = 77.5 bits (189), Expect = 8e-12, Method: Composition-based stats.
Identities = 42/261 (16%), Positives = 77/261 (29%), Gaps = 44/261 (16%)
Query: 26 GDKRP-QRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSK------DEKTA 78
+K P + E + ++D +P +G G + D+D++ T
Sbjct: 43 ANKTPIGGIDASEFSPQEAAELDLMPPA-WGLKSGPASG-VVVLDLDAEGWRESFQAVTG 100
Query: 79 NTFKDTFEILHGT--PIVRIGQK---PKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQ 133
+T +D L T R G+ P P N+ ++
Sbjct: 101 HTVEDLPATLSWTSGKPGRSGRAFTVPPEWWPALRNRRPWSNDDGETLW----ELRWDRH 156
Query: 134 YFVAYNIHPKTKKEYTWT--TPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSI 191
V HP+T + Y W P + P ++L + +P +
Sbjct: 157 QAVIIGTHPETGR-YRWRPGGDPKDVGLAVAP-------DWLLEPLAVQELPDTEPITPT 208
Query: 192 IPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIAR 251
L+ + S+ +W+ MA+H +
Sbjct: 209 AED------------TERAVQMLAHIDPAA-HTSYGDWLRAGMALH---DTDPDLLSVWV 252
Query: 252 RWSKQGSTYDEENFNYKWDTF 272
WS+Q +DE KW +
Sbjct: 253 EWSRQMPNFDEAECLEKWSSL 273
>gi|75812724|ref|YP_320341.1| hypothetical protein Ava_C0063 [Anabaena variabilis ATCC 29413]
gi|75705480|gb|ABA25152.1| conserved hypothetical protein [Anabaena variabilis ATCC 29413]
Length = 332
Score = 77.5 bits (189), Expect = 8e-12, Method: Composition-based stats.
Identities = 50/310 (16%), Positives = 93/310 (30%), Gaps = 58/310 (18%)
Query: 18 FKLIPLRLGDKRPQRLGKWE---------EQLLSSEKIDKLPA------CGFGFVCGVGE 62
++++P KRP +WE + L ++ G VCG
Sbjct: 19 WRIVPTF--GKRPLGK-EWEKNTYSPKELQTELIRRRLKVWTNNRFITPTGIALVCGFNH 75
Query: 63 --QPLYAFDID--------------SKDEKTAN---------TFKDTFEILHGTPIVRI- 96
L A D D S+ E+ + + + I
Sbjct: 76 PQGYLVAIDCDGETSWRQIIQINEHSEPEELNHLTPTETRDTPMESLCDRAQQYLPPTIA 135
Query: 97 ---GQKPKILIPFRMNKEG---IKKKKTTESTQGHLDILGCG-QYFVAYNIHPKTKKEYT 149
G+K + + + +K +K HL+ G + + HP+ + Y
Sbjct: 136 FTSGRKYRSQRLYLIPNSKACDVKSRKIKTGKDEHLEFRGKNLASILPPSFHPE-GRNYR 194
Query: 150 WT--TPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTN 207
W P ++E P + + ++ +P K + + + +
Sbjct: 195 WLPGCSPSERQIEIAPDWVIAQMLVKQEKTRKFNLPKEKYNRRYGVDRYAHLIPSIETNI 254
Query: 208 REITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNY 267
+ L F + + WI V MA+ S + WS+ Y Y
Sbjct: 255 QTALVLLEVIHPRFAD-DYHSWIQVGMALKSV---SPILFKAWDTWSQLSPKYKPGECAY 310
Query: 268 KWDTFDFEEI 277
KW +F+ I
Sbjct: 311 KWQSFNKTGI 320
>gi|331648291|ref|ZP_08349380.1| virulence-associated E family protein [Escherichia coli M605]
gi|331042840|gb|EGI14981.1| virulence-associated E family protein [Escherichia coli M605]
Length = 728
Score = 77.5 bits (189), Expect = 8e-12, Method: Composition-based stats.
Identities = 88/631 (13%), Positives = 181/631 (28%), Gaps = 97/631 (15%)
Query: 26 GDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTF 85
D++ + +W +++ + +C A D DS+DE + T
Sbjct: 56 RDRQVTGIAQWTSHVVTEHDFARWSNEPDYGICVRTGHGWLALDCDSEDEDIQADIRKTL 115
Query: 86 EILHGTPIVRIGQK--PKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPK 143
L G R + K L ++ + K+ G +++L GQ FVA H
Sbjct: 116 VQLLGELPPRRWRANSNKCLYLLAVDGDFRKRIHRLAGDMGIIELLANGQQFVACGTH-S 174
Query: 144 TKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNR 203
+ W ++ P ++ E +E L++ E V + + +
Sbjct: 175 SGARIEWDGGL----PDEPPAITGEQLETLWQRLAEQLPVSVTTEAGSTKMRDRSTFTP- 229
Query: 204 QYTNREITAFLSCFGEEFYNGSH-DEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDE 262
+ +L G +G++ + +I H T G + + +++
Sbjct: 230 -GATDDTAEYLDANGWTLLDGANGERYIRCPFEDGHSTGGDPTST---VYFPGGTAGFEQ 285
Query: 263 ENFNYKWDTFDFEEIGDTAKKRSTFTSLFYH-HGKLIPKGLLASRF-SDAYNKAMFSIYK 320
+F + + GD F + + L F D + + +I
Sbjct: 286 GHFKCLHASCAHRDDGDFLNAIGIRNDDFEDLTSTEVAEPLPLPAFERDKWGRIEATISN 345
Query: 321 KGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNS 380
+ D + + + M + + +
Sbjct: 346 AAKAVVRPD----FVDIDIRFDQFRDEI-------------MFAQAGSGQWQAFTDADYA 388
Query: 381 KSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLET 440
+ R +E+ + + + + DS+ +L
Sbjct: 389 RL----------RITMEKRGFKPVGRELIRDVVLLAADEQPFDSAITWLN---------- 428
Query: 441 GQKVKPTKE---LYITK--STGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALL 495
G + Y T + TP+ + L G L
Sbjct: 429 GLEWDGVPRIECFYHTHFGTADTPYTRAVSMYMWTAL-----------------AGRVLE 471
Query: 496 GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIR 555
G KA + G G GKS+ + + + + + + E L R
Sbjct: 472 PGIKADMVPILVGPQGCGKSSGVEAL----------SPDPAFFTEISFAEKDD---DLAR 518
Query: 556 LMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR---LNYGNTYSESPASFTPFIVPNK 612
M R+V +E E +N +++ + T Y ++ P N+
Sbjct: 519 KMRGRLV--AEIGELRGLNTKELESIKAFVTRTHENWIPKYREFATQFPRRLVFVGTTNE 576
Query: 613 HLFVRNPDDAWWRRYIVI---PFDKPIANRD 640
F+ + RR++ + D RD
Sbjct: 577 DEFLADKTGN--RRWLPVEVSKVDVKAIKRD 605
>gi|307825540|ref|ZP_07655758.1| conserved hypothetical protein [Methylobacter tundripaludum SV96]
gi|307733426|gb|EFO04285.1| conserved hypothetical protein [Methylobacter tundripaludum SV96]
Length = 803
Score = 77.5 bits (189), Expect = 8e-12, Method: Composition-based stats.
Identities = 58/322 (18%), Positives = 106/322 (32%), Gaps = 50/322 (15%)
Query: 466 SQEFLDLVSGYFESEE----VMDYFTRCVGMALL-GGNKAQRFIHIRGVGGSGKSTLMNL 520
LDL+ E+ V ++ R + L G K + I I G G+GK+ ++
Sbjct: 470 CDRLLDLLMYMCADEKNSDAVYNWVLRWLAYPLQHPGAKMKTTIVIHGPQGTGKNLFFDV 529
Query: 521 IKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISE-TNENDEINA-AKI 578
I +G Y + S I G G ++ E +D + K+
Sbjct: 530 ILGIYGK-YGRIIDQSAIEDKFNDCFG----------GKLFMLADEVVARSDLYHIKNKL 578
Query: 579 KQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN 638
K + GD + Y E+ F+ + V + DD RR+ VI +
Sbjct: 579 KGLITGDRIRINPKNMAAYEEANHVNLVFLSNERMPVVLDQDD---RRHQVI-WT----- 629
Query: 639 RDASFAQKLETKYTLEAKKWFLKGVKAYISK----GLDVDIPEVCLKAKEEERQGT-DTY 693
A + LE + + Y+ + + AK++ + + D+
Sbjct: 630 -PAKLGPDFYKEIALEIDNGGAEALHYYLVNLPLGDFNPHTKPLMTAAKQDLQDLSKDSI 688
Query: 694 QAWIDDCCDIG----ENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIG 749
+ D+ + S + Y+ + +E K K
Sbjct: 689 IRFYDEWNTKEISGVPPIPALSEDIYTLYTHWCRREGVRAAP-----------KNKAIDA 737
Query: 750 GIKREKIEKEWKSKRIIKGLKL 771
KR ++KE K R + G+ +
Sbjct: 738 IAKRPGVKKERK--RYLNGVSM 757
>gi|22788811|ref|NP_690523.1| Orf104 [Heliothis zea virus 1]
gi|22671571|gb|AAN04398.1|AF451898_103 Orf104 [Heliothis zea virus 1]
Length = 1585
Score = 77.1 bits (188), Expect = 1e-11, Method: Composition-based stats.
Identities = 41/224 (18%), Positives = 75/224 (33%), Gaps = 25/224 (11%)
Query: 472 LVSGYFESEE--VMDYFTRCVGMALLGGNKAQR-FIHIRGVGGSGKSTLMNLIKYAFGNQ 528
+S F+ E + DYF L K Q+ G GK+TL+NL +
Sbjct: 1160 FLSETFKYNEHVLRDYFMYTC--CLYQPCKVQKHMNIYYGSPRCGKTTLLNLHTEMCNDD 1217
Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588
+ + ++ +P+ I L I II+E + I+ +K MTG D
Sbjct: 1218 AIYRTSKEY----KDVKSSGPSPNAIHLKTKYISIINELSS---ISNNLLKTMTGDDGTN 1270
Query: 589 A-RLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDAS--- 642
R + + + N ++ PD+A R I+ F+ + +D +
Sbjct: 1271 DDRTLFSTKFPMLSSCTFLVAACNHLPYMTMPDEAIRDRIIIFLFEMKATDVVKDPNCML 1330
Query: 643 -------FAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVC 679
+ +++E L + P+
Sbjct: 1331 TFAENYTYKEQMEVSKMAPLLSNLLYVYFRQHRNDYGIVSPKCI 1374
>gi|38683726|gb|AAR26902.1| FirrV-1-B27 [Feldmannia irregularis virus a]
Length = 575
Score = 77.1 bits (188), Expect = 1e-11, Method: Composition-based stats.
Identities = 37/260 (14%), Positives = 98/260 (37%), Gaps = 31/260 (11%)
Query: 465 PSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNK---AQRFIHIRGVGGSGKSTLMNLI 521
+ F + + +++++ + VG N+ Q ++G+ G+GKST++ +I
Sbjct: 292 ATPNFDSIFAPQEWAQDMVHWLFVFVGRLFFAVNERDQWQVIPFLKGIAGTGKSTVIKVI 351
Query: 522 KYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM 581
+ +G A ++ N + A+ + ++ II E + ++ A + M
Sbjct: 352 QKLYG------ARDIGVLSNNMEKQFGAST----IFDKKVFIIPEMKGDFTLDVAVFQSM 401
Query: 582 TGGDCMTARLNYGNTYSESPASFTP--FIVPNKHLFVRNPDDAWWRRYIVIPFD--KPIA 637
G+ ++ + + + +T + N+ ++ + RR +V F P+
Sbjct: 402 VTGEEVSLAVKHESP---RVGKWTVPGIMAGNESPNWQDKSGSISRRVVVFDFPNKVPLE 458
Query: 638 NRDASFAQKLETKYTLEAKK-------WFLKGVKAYISKGLDVDIPEVCLKAKEEERQGT 690
+ + + + W + + + + +P + K + + T
Sbjct: 459 TSNPNLFCDIVDSEIPAIIRKATMSYQWAVD---HHRNSDIWTVLPARIREEKRKLQFST 515
Query: 691 DTYQAWID-DCCDIGENLWE 709
+ A+++ D DI +
Sbjct: 516 NPLFAYVNSDRVDIDPGAYV 535
>gi|124378265|ref|YP_001029444.1| GfV-D4-ORF1 [Glypta fumiferanae ichnovirus]
gi|124270649|dbj|BAF45569.1| GfV-D4-ORF1 [Glypta fumiferanae ichnovirus]
Length = 849
Score = 77.1 bits (188), Expect = 1e-11, Method: Composition-based stats.
Identities = 71/423 (16%), Positives = 134/423 (31%), Gaps = 77/423 (18%)
Query: 314 AMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEP 373
A+F ++ Y K Y D+ SLT D I L + +E
Sbjct: 403 ALFDVFPNISNYYRYSHKRIYHCDEKTNIWNSLTNDDFYRQIRQKLERKIQ--LTEAELI 460
Query: 374 EDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQD 433
+ S + D + +E+ + ++ LDS S +
Sbjct: 461 NN----STTDIVLKIRDIIVRKIEDVNF-----------------TEQLDSVSNLFVTDN 499
Query: 434 GILDLETGQKVKPTK-----ELYITKSTGTPFVEGEPSQ---EFLDLVSGYFESEEVMDY 485
+D+ + P E I +TG + G + + +
Sbjct: 500 KAIDMS---IIPPVIRSIKCEDLIKTTTGWTYDPGLSCKYKKSVKSYFNKLLPKPCEQRW 556
Query: 486 FTRCVGMALLGGNKAQRFIHIRGV--GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP 543
F + L G + + + G SGKSTL++L++ FGN Y S I+ R
Sbjct: 557 FLSFIARMLNGKRCNEPCVILTDNRGGKSGKSTLIHLLRAVFGNYY---VNDSTIVPRRT 613
Query: 544 PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPAS 603
+++ R++++ +N+ +N IK T +Y N S P +
Sbjct: 614 KYFIRSSQE-----NKRLLVVDGLEKNETLNCDFIKS-------TINYDYSNRRSIFPVN 661
Query: 604 FTPFIVPNK-HLFVRNPDDAWWRRYIVIPFDKPIANR-------------------DASF 643
IV N + D+ + + + P ++ D S
Sbjct: 662 VGLIIVSNTGKPILDTSDEDFLKMIVTCPMRSRFVSKKKMAHMKKHGEDITDTYIADNSL 721
Query: 644 AQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDI 703
+ +++ + L+ KG +P+ + D Y W+D +
Sbjct: 722 RHQF-SEWRSAVLDFLLE-----FYKGSLPPVPDSMIDCNNSNFHDNDFYVNWLDTHISV 775
Query: 704 GEN 706
+N
Sbjct: 776 VKN 778
>gi|118581963|ref|YP_903213.1| hypothetical protein Ppro_3564 [Pelobacter propionicus DSM 2379]
gi|118504673|gb|ABL01156.1| hypothetical protein Ppro_3564 [Pelobacter propionicus DSM 2379]
Length = 734
Score = 77.1 bits (188), Expect = 1e-11, Method: Composition-based stats.
Identities = 25/76 (32%), Positives = 40/76 (52%), Gaps = 1/76 (1%)
Query: 202 NRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYD 261
+++ + I + + +D+W+ V MAV HET GS +G + RWS +GS Y
Sbjct: 273 DQEANDTSIQKIEALLNRIDADCGYDDWLHVGMAVFHETSGSDEGLALFDRWSSKGSKYK 332
Query: 262 E-ENFNYKWDTFDFEE 276
+ YKW +F F+E
Sbjct: 333 GIKEIEYKWRSFRFDE 348
>gi|227828130|ref|YP_002829910.1| Bifunctional DNA primase/polymerase [Sulfolobus islandicus M.14.25]
gi|227459926|gb|ACP38612.1| Bifunctional DNA primase/polymerase [Sulfolobus islandicus M.14.25]
Length = 855
Score = 76.7 bits (187), Expect = 1e-11, Method: Composition-based stats.
Identities = 55/279 (19%), Positives = 101/279 (36%), Gaps = 32/279 (11%)
Query: 8 EQAKQAIHNGFKLIPLRLGDKRPQ-RLGKWEEQLLSSEKIDKLPAC---GFGFVCGVGEQ 63
E A G +IPL+ +K P G+++++ S +I+K VCG
Sbjct: 7 EHALFYHTYGLSVIPLKPKEKIPIVEWGEYQKERPSISEIEKWFKDTDNNIAIVCGKVSG 66
Query: 64 PLYAFDIDSKDEKTANTF-------KDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKK 116
L D D D + F + E ++ T +V G+ + + K
Sbjct: 67 NLVVIDFD--DTEIYEKFLKEVEKDNELSESVNNTWLVETGK----GYHIYLRVDNDKPV 120
Query: 117 KTTESTQGHLDILGCGQYFVAYN-IHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFK 175
+T + + +DI G G Y VA IHP + K Y + + ++SEE + L
Sbjct: 121 RTAKLPK--IDIKGEGGYVVAPPSIHP-SGKRYEFVRFSKTTG-HEIRVISEEQYQKLLA 176
Query: 176 FFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMA 235
+ IT + + N R+ T+ ++ + G V+M
Sbjct: 177 LLERITG------VKVEEEVSGENRKFRELTSEKVLKIADIIAPIYKEGQRH---NVIMY 227
Query: 236 VHHETRGSSKGKEIARRWSK-QGSTYDEENFNYKWDTFD 273
+ ++ E A++ + + + N + T D
Sbjct: 228 LSGWLYKANVSYESAKKLVEFICDKFGDNECNDRLYTLD 266
>gi|299820270|gb|ADJ54280.1| hypothetical phage/plasmid primase [archaeon enrichment culture
clone 1(2010)]
Length = 575
Score = 76.7 bits (187), Expect = 1e-11, Method: Composition-based stats.
Identities = 59/327 (18%), Positives = 112/327 (34%), Gaps = 37/327 (11%)
Query: 466 SQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF 525
+ +F F+ +E +YF VG L N + +I G SGKST++ L+
Sbjct: 260 TNKFYQFFRKQFDDKEW-EYFIDLVGALLKPSNS-KLIGYIDGPTDSGKSTILYLLTRPI 317
Query: 526 GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGG- 584
+ V + I Q L L G I+I+ E D++ A + + G
Sbjct: 318 -KKMVATISSISIKQGYV-------FGLEMLYGKHILIMPE--RIDKLPAELLNLLLGKR 367
Query: 585 DCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD----DAWWRRYIVIPFDKPIANRD 640
D + + N + D DA R I +
Sbjct: 368 DQILIERKN-KPAVMMESLKLAIFAGNGPPKIEYLDPDALDALLNRLSYIRIKPIQGPKI 426
Query: 641 ASFAQKLETKYTLEAKKWFLKGV----KAYISKGLDVDIPEVCLKAKEEERQGTDTYQAW 696
+ + + W G + + + +D ++++EE T + +
Sbjct: 427 EDIDRLISDIDIMSFLMWC--GWNLRQREWQIRKRGIDEIWEVIQSREE------TVEKF 478
Query: 697 ID-DCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755
++ D I + + L +Y ++ ++ L ++ L +KG G+
Sbjct: 479 LESDWVKIDPDGRIKGTVLYNAYVKFVKRVLKMTPTSLTN--FYNELDEKGSKYGVSTYI 536
Query: 756 IEKEWKSKRIIKGLKLKPAFESVDDNS 782
EK ++GL+L A + D +S
Sbjct: 537 REK----VTWVRGLRLTEASDVTDKDS 559
>gi|260845231|ref|YP_003223009.1| putative replication protein [Escherichia coli O103:H2 str. 12009]
gi|257760378|dbj|BAI31875.1| probable replication protein [Escherichia coli O103:H2 str. 12009]
Length = 728
Score = 76.7 bits (187), Expect = 2e-11, Method: Composition-based stats.
Identities = 92/631 (14%), Positives = 183/631 (29%), Gaps = 97/631 (15%)
Query: 26 GDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTF 85
D++ + +W +++ + +C A D DS+DE + T
Sbjct: 56 RDRQVTGIAQWTGHVVTEHDFARWSNEPDYGICVRTGHGWLALDCDSEDEDIQADIRKTL 115
Query: 86 EILHGTPIVRIGQK--PKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPK 143
L G R + K L ++ + K+ G +++L GQ FVA H
Sbjct: 116 VQLLGESPPRRWRANSNKCLYLLAVDGDFRKRIHRLAGDMGIIELLANGQQFVACGTH-S 174
Query: 144 TKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNR 203
+ W ++ P ++ E +E L++ E V + + +
Sbjct: 175 SGARIEWDGGL----PDEPPAITGEQLETLWQRLAEQLPVSVTTEAGNTKMRDRSAFTP- 229
Query: 204 QYTNREITAFLSCFGEEFYNGSH-DEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDE 262
+ +L G +G++ + +I H + G + + +++
Sbjct: 230 -GATDDTAEYLDANGWTLLDGANGERYIRCPFEDGHSSGGDPTST---VYFPAGTAGFEQ 285
Query: 263 ENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKG 322
+F + + GD F + L
Sbjct: 286 GHFKCLHASCAHRDDGDFLNAIGIRNDDFEDLTSIEVAEPLP------------------ 327
Query: 323 HFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKS 382
L + W I + + A + + V + +E S
Sbjct: 328 --LPAFERDKW-------GRIEATISNAAKAVVRSDFVDIDIRFDQFRDEIMFAPAGSGQ 378
Query: 383 PRFWFNTDYRRQNV--EENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLET 440
R + + DY R + E+ + + + + DS+ +L
Sbjct: 379 WRAFTDADYARLRITMEKRGFKPVGRELIRDVVLLAADEQPFDSAITWLN---------- 428
Query: 441 GQKVKPTKE---LYITK--STGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALL 495
G + Y T + TP+ + L G L
Sbjct: 429 GLEWDGVPRIECFYHTHFGTADTPYTRAVSMYMWTAL-----------------AGRVLE 471
Query: 496 GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIR 555
G KA + G G GKS+ + + + + + + E L R
Sbjct: 472 PGIKADMVPILVGPQGCGKSSGVEAL----------SPDPAFFTEISFAEKDD---DLAR 518
Query: 556 LMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR---LNYGNTYSESPASFTPFIVPNK 612
M R+V +E E +N +++ + T Y ++ P N+
Sbjct: 519 KMRGRLV--AEIGELRGLNTKELESIKAFVTRTHENWIPKYREFATQFPRRLVFVGTTNE 576
Query: 613 HLFVRNPDDAWWRRYIVI---PFDKPIANRD 640
F+ + RR++ + D RD
Sbjct: 577 DEFLADKTGN--RRWLPVEVSKVDVKAIKRD 605
>gi|291283822|ref|YP_003500640.1| putative P-loop ATPase-like protein [Escherichia coli O55:H7 str.
CB9615]
gi|290763695|gb|ADD57656.1| Predicted P-loop ATPase-like protein [Escherichia coli O55:H7 str.
CB9615]
Length = 728
Score = 76.3 bits (186), Expect = 2e-11, Method: Composition-based stats.
Identities = 92/631 (14%), Positives = 181/631 (28%), Gaps = 97/631 (15%)
Query: 26 GDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTF 85
D++ + +W +++ + +C A D DS+DE + T
Sbjct: 56 RDRQVTGIAQWTGYVVTEHDFARWSNEPDYGICVRTGHGWLALDCDSEDEDIQADIRKTL 115
Query: 86 EILHGTPIVRIGQK--PKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPK 143
L G R + K L ++ + K+ G +++L GQ FVA H
Sbjct: 116 VQLLGELPPRRWRANSNKCLYLLAVDGDFRKRIHRLAGDMGIIELLANGQQFVACGTH-S 174
Query: 144 TKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNR 203
+ W ++ P ++ E +E L++ E V + + +
Sbjct: 175 SGARIEWDGGL----PDEPPAITGEQLETLWQRLAEQLPVSVTTEAGNTKMRDRSAFTP- 229
Query: 204 QYTNREITAFLSCFGEEFYNGSH-DEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDE 262
+ +L G +G++ + +I H + G + + +++
Sbjct: 230 -GATDDTAEYLDANGWTLLDGANGERYIRCPFEDGHSSGGDPTSTAY---FPAGTAGFEQ 285
Query: 263 ENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKG 322
+F + + GD F L
Sbjct: 286 GHFKCLHASCAHRDDGDFLNAIGIRNDDFEDLTSTEVAEPLP------------------ 327
Query: 323 HFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKS 382
L + W I + + A + V + +E S
Sbjct: 328 --LPAFERDKW-------GRIEATISNAAKAVVRPDFVDIDIRFDQFRDEIMFAPAGSGQ 378
Query: 383 PRFWFNTDYRRQNV--EENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLET 440
R + + DY R + E+ + + + + DS+ +L
Sbjct: 379 WRAFTDADYARLRITMEKRGFKPVGRELIRDVVLLAADEQPFDSAITWLN---------- 428
Query: 441 GQKVKPTKE---LYITK--STGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALL 495
G + Y T + TP+ + L G L
Sbjct: 429 GLEWDGVPRIECFYHTHFGTADTPYTRAVSMYMWTAL-----------------AGRVLE 471
Query: 496 GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIR 555
G KA + G G GKS+ + + + + + + E L R
Sbjct: 472 PGIKADMVPILVGPQGCGKSSGVEAL----------SPDPAFFTEISFVEKDD---DLAR 518
Query: 556 LMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR---LNYGNTYSESPASFTPFIVPNK 612
M R+V +E E +N +++ + T Y ++ P N+
Sbjct: 519 KMRGRLV--AEIGELRGLNTKELESIKAFVTRTHENWIPKYREFATQFPRRLVFVGTTNE 576
Query: 613 HLFVRNPDDAWWRRYIVI---PFDKPIANRD 640
F+ + RR++ + D RD
Sbjct: 577 DEFLADKTGN--RRWLPVEVSKVDVKAIKRD 605
>gi|163955160|ref|YP_001648264.1| hypothetical protein OsV5_188r [Ostreococcus virus OsV5]
gi|163638609|gb|ABY27968.1| hypothetical protein OsV5_188r [Ostreococcus virus OsV5]
Length = 647
Score = 76.3 bits (186), Expect = 2e-11, Method: Composition-based stats.
Identities = 47/300 (15%), Positives = 102/300 (34%), Gaps = 35/300 (11%)
Query: 456 TGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGN--------KAQRFIHIR 507
+ + P+ F ++ +EV + + G Q +
Sbjct: 324 SHLENWQDIPTPWFDSVLKYQKFEDEVCHW-----AYVMGGRLCFDVGELDGWQVIPFFK 378
Query: 508 GVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISET 567
G+ SGKSTL I F Y N + + N + G L + + + I E
Sbjct: 379 GIARSGKSTL---ITKVFKKFY-ENEDVGTLSNNIEKKFG-----LSAIKDAFMFIAPEV 429
Query: 568 NENDEINAAKIKQMTGGDCMTARLNYGNT--YSESPASFTPFIVPNKHLFVRNPDDAWWR 625
+ + A+ + M G+ ++ + + + N+ ++ + R
Sbjct: 430 KGDLALEQAEFQSMVSGEDVSVAVKNKTAVSIEWNVPG---VLGGNEVPNWKDNSGSVLR 486
Query: 626 RYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDI----PEVCLK 681
R + F K + + D +KL + + K +K Y +K D DI PE K
Sbjct: 487 RILPWNFSKQVRDADPQLDEKLNRELPIILLK-CVKAYLDYSNKYRDKDIWNVVPEYFKK 545
Query: 682 AKEEERQGTDTYQAWIDDCCDI-GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTL 740
+++ T +++ + G+ L+ + ++++ + N + +
Sbjct: 546 IQKQVAMVASTLHNFLESTNIVFGKELFVPQTLFIQVFNQHCQAN-NLGKPKF-NPDFYA 603
>gi|290343635|ref|YP_003495002.1| hypothetical protein OTV1_163 [Ostreococcus tauri virus 1]
gi|260161050|emb|CAY39751.1| hypothetical protein OTV1_163 [Ostreococcus tauri virus 1]
Length = 647
Score = 76.3 bits (186), Expect = 2e-11, Method: Composition-based stats.
Identities = 47/300 (15%), Positives = 102/300 (34%), Gaps = 35/300 (11%)
Query: 456 TGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGN--------KAQRFIHIR 507
+ + P+ F ++ +EV + + G Q +
Sbjct: 324 SHLENWQDIPTPWFDSVLKYQKFEDEVCHW-----AYVMGGRLCFDVGELDGWQVIPFFK 378
Query: 508 GVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISET 567
G+ SGKSTL I F Y N + + N + G L + + + I E
Sbjct: 379 GIARSGKSTL---ITKVFKKFY-ENEDVGTLSNNIEKKFG-----LSAIKDAFMFIAPEV 429
Query: 568 NENDEINAAKIKQMTGGDCMTARLNYGNT--YSESPASFTPFIVPNKHLFVRNPDDAWWR 625
+ + A+ + M G+ ++ + + + N+ ++ + R
Sbjct: 430 KGDLALEQAEFQSMVSGEDVSVAVKNKTAVSIEWNVPG---VLGGNEVPNWKDNSGSVLR 486
Query: 626 RYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDI----PEVCLK 681
R + F K + + D +KL + + K +K Y +K D DI PE K
Sbjct: 487 RILPWNFSKQVRDADPQLDEKLNRELPIILLK-CVKAYLDYSNKYRDKDIWNVVPEYFKK 545
Query: 682 AKEEERQGTDTYQAWIDDCCDI-GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTL 740
+++ T +++ + G+ L+ + ++++ + N + +
Sbjct: 546 IQKQVAMVASTLHNFLESTNIVFGKELFVPQTLFIQVFNQHCQAN-NLGKPKF-NPDFYA 603
>gi|313576839|gb|ADR67014.1| bacteriophage P4 DNA primase [Klebsiella pneumoniae subsp.
pneumoniae]
Length = 521
Score = 75.9 bits (185), Expect = 3e-11, Method: Composition-based stats.
Identities = 43/252 (17%), Positives = 71/252 (28%), Gaps = 56/252 (22%)
Query: 283 KRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVY 342
+S F ++ + A R + Y +A+ G L + W
Sbjct: 315 AQSPFDTMSEAEFTAMSASDKAMRVHEHYGEALAVDAN-GQLLSRYENGIW--------- 364
Query: 343 IWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKA 402
V S+ D + R F++ R +V E K
Sbjct: 365 ----------------------KVITPSDFARDVAGLFQRLRAPFSSG-RITSVVETLKL 401
Query: 403 KSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVE 462
Q A R +G ++G+LD +G +K ++ F
Sbjct: 402 IIPQQEAPAR--------------RLIGFRNGVLDTSSGIFSPHSKSHWLRTLCDVDFTP 447
Query: 463 GEP-------SQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGK 514
+ F + + + + M L Q F+ + G GGSGK
Sbjct: 448 PVEGETLETHAPNFWRWLDRAASGNPTKRNVILAALFMVLANRYDWQLFLEVTGPGGSGK 507
Query: 515 STLMNLIKYAFG 526
S L I G
Sbjct: 508 SILAE-IATMLG 518
>gi|124378233|ref|YP_001029427.1| GfV-D1-ORF1 [Glypta fumiferanae ichnovirus]
gi|124270640|dbj|BAF45563.1| GfV-D1-ORF1 [Glypta fumiferanae ichnovirus]
Length = 833
Score = 75.5 bits (184), Expect = 3e-11, Method: Composition-based stats.
Identities = 55/317 (17%), Positives = 105/317 (33%), Gaps = 54/317 (17%)
Query: 420 DLLDSSSRFLGEQDGILDLETGQKVKPTK-----ELYITKSTGTPFVEGEPSQ---EFLD 471
+ LDS S + +D+ + P E I +TG + G +
Sbjct: 469 EQLDSVSNLFVTDNKAIDMS---IIPPVIRSIKCEDLIKTTTGWTYDPGLSCKYKKSVKS 525
Query: 472 LVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGV--GGSGKSTLMNLIKYAFGNQY 529
+ +F + L G + + + G SGKSTL++L++ FGN Y
Sbjct: 526 YFNKLLPKPCEQRWFLSFIARMLNGKRCNEPCVILTDNRGGKSGKSTLIHLLRAVFGNYY 585
Query: 530 VINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTA 589
S I+ R +++ R++++ +N+ +N IK T
Sbjct: 586 ---VNDSTIVPRRTKYFIRSSQE-----NKRLLVVDGLEKNETLNCDFIKS-------TI 630
Query: 590 RLNYGNTYSESPASFTPFIVPNK-HLFVRNPDDAWWRRYIVIPFDKPIANR--------- 639
+Y N S P + IV N + D+ + + + P ++
Sbjct: 631 NYDYSNRRSIFPVNVGLIIVSNTGKPILDTSDEDFLKMIVTCPMRSRFVSKKKMAHMKKH 690
Query: 640 ----------DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQG 689
D S + +++ + L+ KG +P+ +
Sbjct: 691 GEDITDTYIADNSLRHQF-SEWRSAVLDFLLE-----FYKGSLPPVPDSMIDCNNSNFHD 744
Query: 690 TDTYQAWIDDCCDIGEN 706
D Y W+D + +N
Sbjct: 745 NDFYVNWLDTHISVVKN 761
>gi|218555124|ref|YP_002388037.1| hypothetical protein ECIAI1_2654 [Escherichia coli IAI1]
gi|218361892|emb|CAQ99492.1| conserved hypothetical protein; putative virulence-associated
protein E [Escherichia coli IAI1]
Length = 728
Score = 75.5 bits (184), Expect = 3e-11, Method: Composition-based stats.
Identities = 92/631 (14%), Positives = 182/631 (28%), Gaps = 97/631 (15%)
Query: 26 GDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTF 85
D++ + +W +++ + +C A D DS+DE + T
Sbjct: 56 RDRQVTGIAQWTGHVVTEHDFARWSNEPDYGICVRTGHGWLALDCDSEDEDIQADIRKTL 115
Query: 86 EILHGTPIVRIGQK--PKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPK 143
L G R + K L ++ + K+ G +++L GQ FVA H
Sbjct: 116 VQLLGELPPRRWRANSNKCLYLLAVDGDFRKRIHRLAGDMGIIELLANGQQFVACGTH-S 174
Query: 144 TKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNR 203
+ W ++ P ++ E +E L++ E V + + +
Sbjct: 175 SGARIEWDGGL----PDEPPAITGEQLETLWQRLAEQLPVSVTTEAGNTKMRDRSAFTP- 229
Query: 204 QYTNREITAFLSCFGEEFYNGSH-DEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDE 262
+ +L G +G++ + +I H + G + + +++
Sbjct: 230 -GATDDTAEYLDANGWTLLDGANGERYIRCPFEDGHSSGGDPTST---VYFPAGTAGFEQ 285
Query: 263 ENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKG 322
+F + + GD F + L
Sbjct: 286 GHFKCLHASCAHRDDGDFLNAIGIRNDDFEDLTSIEVAEPLP------------------ 327
Query: 323 HFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKS 382
L + W I + + A + V + +E S
Sbjct: 328 --LPAFERDKW-------GRIEATISNAAKAVVRPDFVDIDIRFDQFRDEIMFAPAGSGQ 378
Query: 383 PRFWFNTDYRRQNV--EENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLET 440
R + + DY R + E+ + + + + DS+ +L
Sbjct: 379 WRAFTDADYARLRITMEKRGFKPVGRELIRDVVLLAADEQPFDSAITWLN---------- 428
Query: 441 GQKVKPTKE---LYITK--STGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALL 495
G + Y T + TP+ + L G L
Sbjct: 429 GLEWDGVPRIECFYHTHFGTADTPYTRAVSMYMWTAL-----------------AGRVLE 471
Query: 496 GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIR 555
G KA + G G GKS+ + + + + + + E L R
Sbjct: 472 PGIKADMVPILVGPQGCGKSSGVEAL----------SPDPAFFTEISFAEKDD---DLAR 518
Query: 556 LMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR---LNYGNTYSESPASFTPFIVPNK 612
M R+V +E E +N +++ + T Y ++ P N+
Sbjct: 519 KMRGRLV--AEIGELRGLNTKELESIKAFVTRTHENWIPKYREFATQFPRRLVFVGTTNE 576
Query: 613 HLFVRNPDDAWWRRYIVI---PFDKPIANRD 640
F+ + RR++ + D RD
Sbjct: 577 DEFLADKTGN--RRWLPVEVSKVDVKAIKRD 605
>gi|37626154|gb|AAQ96530.1| putative integrase [Vibrio phage VP16T]
Length = 791
Score = 75.5 bits (184), Expect = 3e-11, Method: Composition-based stats.
Identities = 52/323 (16%), Positives = 93/323 (28%), Gaps = 53/323 (16%)
Query: 10 AKQAIHNGFKLIPLRLGDKRP--QRLGKWEE-QLLSSEKIDKLPACGFGFVCGVGEQPLY 66
A NG + P L DK P + W++ + P+ G Q +
Sbjct: 5 AVTLKANGLDVFPC-LQDKTPAVPKGTSWKQWAHADLNALP-WPSDIVGVPI---PQGVV 59
Query: 67 AFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGI--------KKKKT 118
D+D+ T + I + K +T
Sbjct: 60 VLDLDTYKGITREYVEAGAGFAIPWDEAHIQDTQSGGQHYAFRAPDWPVKNISNAKHNQT 119
Query: 119 TESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQ 178
E +G LD+ G+ ++A T + Y T P + E L + +
Sbjct: 120 GEKFEG-LDVRSAGKGYIA------TGEPYYRPTAKGGAVAMAFPQMLPPLPEGLRPWLE 172
Query: 179 EITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHH 238
+ ++ I + T + LS +EW+ V +A+
Sbjct: 173 AVEHDSA-ERVEITDQEAQT-----------VREALSYIDP---GDKREEWVKVGLALKS 217
Query: 239 ETRGSSKGKEIARRWSKQG--------STYDEENFNYKWDTFDFEEIGDTAKKRSTFTSL 290
+G + WS + Y E+ +W +F E + +T
Sbjct: 218 GFGDDPQGLSLFDEWSSGALWQDGDMPANYVPEHIETQWHSFKAEGG----RTIATVYHK 273
Query: 291 FYHHGKLIPKGLLASRFSDAYNK 313
G P G+ A +D +
Sbjct: 274 AIEGGWQPPAGINA---ADVFGA 293
>gi|323139650|ref|ZP_08074692.1| Bifunctional DNA primase/polymerase [Methylocystis sp. ATCC 49242]
gi|322395082|gb|EFX97641.1| Bifunctional DNA primase/polymerase [Methylocystis sp. ATCC 49242]
Length = 265
Score = 75.5 bits (184), Expect = 4e-11, Method: Composition-based stats.
Identities = 34/164 (20%), Positives = 58/164 (35%), Gaps = 16/164 (9%)
Query: 10 AKQAIHNGFKLIPLRLGDKRP-QRLGKWEEQLLSSEKI----DKLPACGFGFVCGVGEQP 64
A+ + G+ ++PLR +KRP K + + + + + ++ P G V G
Sbjct: 14 ARSYLARGWSVLPLRPREKRPLAAWRKLQRERPTEDDLVDWFERWPDANIGIVTGEVS-N 72
Query: 65 LYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKIL--IPFRMNKEGIKKKKTTEST 122
L D+D K P+ + F G +
Sbjct: 73 LIVLDVD---PKHGGDIALKQLERRYRPLPPTVEAVTGGGGRHFYFTHPGFLTRNRAGLA 129
Query: 123 QGHLDILGCGQYFVAYN-IHPKTKKEYTWTT--PPHRFKVEDTP 163
QG +D+ G G Y VA +HP + + Y W + P + P
Sbjct: 130 QG-VDLRGDGGYIVAPPSVHP-SGRPYQWASGHGPDEIALAPLP 171
>gi|324014360|gb|EGB83579.1| virulence-associated protein E [Escherichia coli MS 60-1]
Length = 730
Score = 75.5 bits (184), Expect = 4e-11, Method: Composition-based stats.
Identities = 92/631 (14%), Positives = 181/631 (28%), Gaps = 97/631 (15%)
Query: 26 GDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTF 85
D++ + +W +++ + +C A D DS+DE + T
Sbjct: 56 RDRQVTGIAQWTGHVVTEHDFARWSNEPDYGICVRTGHGWLALDCDSEDEDIQADIRKTL 115
Query: 86 EILHGTPIVRIGQK--PKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPK 143
L G R + K L ++ + K+ G +++L GQ FVA H
Sbjct: 116 VQLLGELPPRRWRANSNKCLYLLAVDGDFRKRIHRLAGDMGIIELLANGQQFVACGTH-S 174
Query: 144 TKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNR 203
+ W ++ P ++ E +E L++ E V + + +
Sbjct: 175 SGARIEWDGGL----PDEPPAITGEQLETLWQRLAEQLPVSVTTEAGNTKMRDRSAFTP- 229
Query: 204 QYTNREITAFLSCFGEEFYNGSH-DEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDE 262
+ +L G +G++ + +I H + G + + +++
Sbjct: 230 -GATDDTAEYLDANGWTLLDGANGERYIRCPFEDGHSSGGDPTST---VYFPAGTAGFEQ 285
Query: 263 ENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKG 322
+F + + GD F L
Sbjct: 286 GHFKCLHASCAHRDDGDFLNAIGIRNDDFEDLTSTEVAEPLP------------------ 327
Query: 323 HFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKS 382
L + W I + + A + V + +E S
Sbjct: 328 --LPAFERDKW-------GRIEATISNAAKAVVRPDFVDIDIRFDQFRDEIMFAPAGSGQ 378
Query: 383 PRFWFNTDYRRQNV--EENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLET 440
R + + DY R + E+ + + + + DS+ +L
Sbjct: 379 WRAFTDADYARLRITMEKRGFKPVGRELIRDVVLLAADEQPFDSAITWLN---------- 428
Query: 441 GQKVKPTKE---LYITK--STGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALL 495
G + Y T + TP+ + L G L
Sbjct: 429 GLEWDGVPRIECFYHTHFGTADTPYTRAVSMYMWTAL-----------------AGRVLE 471
Query: 496 GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIR 555
G KA + G G GKS+ + + + + + + E L R
Sbjct: 472 PGIKADMVPILVGPQGCGKSSGVEAL----------SPDPAFFTEISFAEKDD---DLAR 518
Query: 556 LMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR---LNYGNTYSESPASFTPFIVPNK 612
M R+V +E E +N +++ + T Y ++ P N+
Sbjct: 519 KMRGRLV--AEIGELRGLNTKELESIKAFVTRTHENWIPKYREFATQFPRRLVFVGTTNE 576
Query: 613 HLFVRNPDDAWWRRYIVI---PFDKPIANRD 640
F+ + RR++ + D RD
Sbjct: 577 DEFLADKTGN--RRWLPVEVSKVDVKAIKRD 605
>gi|191172659|ref|ZP_03034198.1| replication protein [Escherichia coli F11]
gi|190907132|gb|EDV66732.1| replication protein [Escherichia coli F11]
Length = 684
Score = 75.1 bits (183), Expect = 4e-11, Method: Composition-based stats.
Identities = 92/631 (14%), Positives = 181/631 (28%), Gaps = 97/631 (15%)
Query: 26 GDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTF 85
D++ + +W +++ + +C A D DS+DE + T
Sbjct: 10 RDRQVTGIAQWTGHVVTEHDFARWSNEPDYGICVRTGHGWLALDCDSEDEDIQADIRKTL 69
Query: 86 EILHGTPIVRIGQK--PKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPK 143
L G R + K L ++ + K+ G +++L GQ FVA H
Sbjct: 70 VQLLGELPPRRWRANSNKCLYLLAVDGDFRKRIHRLAGDMGIIELLANGQQFVACGTH-S 128
Query: 144 TKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNR 203
+ W ++ P ++ E +E L++ E V + + +
Sbjct: 129 SGARIEWDGGL----PDEPPAITGEQLETLWQRLAEQLPVSVTTEAGNTKMRDRSAFTP- 183
Query: 204 QYTNREITAFLSCFGEEFYNGSH-DEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDE 262
+ +L G +G++ + +I H + G + + +++
Sbjct: 184 -GATDDTAEYLDANGWTLLDGANGERYIRCPFEDGHSSGGDPTST---VYFPAGTAGFEQ 239
Query: 263 ENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKG 322
+F + + GD F L
Sbjct: 240 GHFKCLHASCAHRDDGDFLNAIGIRNDDFEDLTSTEVAEPLP------------------ 281
Query: 323 HFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKS 382
L + W I + + A + V + +E S
Sbjct: 282 --LPAFERDKW-------GRIEATISNAAKAVVRPDFVDIDIRFDQFRDEIMFAPAGSGQ 332
Query: 383 PRFWFNTDYRRQNV--EENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLET 440
R + + DY R + E+ + + + + DS+ +L
Sbjct: 333 WRAFTDADYARLRITMEKRGFKPVGRELIRDVVLLAADEQPFDSAITWLN---------- 382
Query: 441 GQKVKPTKE---LYITK--STGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALL 495
G + Y T + TP+ + L G L
Sbjct: 383 GLEWDGVPRIECFYHTHFGTADTPYTRAVSMYMWTAL-----------------AGRVLE 425
Query: 496 GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIR 555
G KA + G G GKS+ + + + + + + E L R
Sbjct: 426 PGIKADMVPILVGPQGCGKSSGVEAL----------SPDPAFFTEISFAEKDD---DLAR 472
Query: 556 LMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR---LNYGNTYSESPASFTPFIVPNK 612
M R+V +E E +N +++ + T Y ++ P N+
Sbjct: 473 KMRGRLV--AEIGELRGLNTKELESIKAFVTRTHENWIPKYREFATQFPRRLVFVGTTNE 530
Query: 613 HLFVRNPDDAWWRRYIVI---PFDKPIANRD 640
F+ + RR++ + D RD
Sbjct: 531 DEFLADKTGN--RRWLPVEVSKVDVKAIKRD 559
>gi|67922845|ref|ZP_00516344.1| hypothetical protein CwatDRAFT_3556 [Crocosphaera watsonii WH 8501]
gi|67855338|gb|EAM50598.1| hypothetical protein CwatDRAFT_3556 [Crocosphaera watsonii WH 8501]
Length = 514
Score = 75.1 bits (183), Expect = 5e-11, Method: Composition-based stats.
Identities = 29/226 (12%), Positives = 70/226 (30%), Gaps = 27/226 (11%)
Query: 265 FNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHF 324
F+ W + T K L + K I L + +
Sbjct: 258 FDEMWKKRGSKP--KTVKLSRIEHDLPAWNEKSITDWL--------------ATLYEKKL 301
Query: 325 LYTADTKAWYKKDKNNVYIWSLTLDKITASIM--------NFLVSMKEDVFDLSEEPEDN 376
+Y TK WY +WS+T ++ ++ + + ++ + +++
Sbjct: 302 IYEDRTKEWYLYGGQKEGVWSITSNESIERMLMTQMDNLLDESKKFNKQIYTAMKSVKES 361
Query: 377 NKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLL--DSSSRFLGEQDG 434
N++ + + + Q ++ S + + D S + +G
Sbjct: 362 NRDKFEKKELL-SQLKEQLIDYRSYKLRFVKDCRERLSRVVLIDKFVSKSDPNLIPMANG 420
Query: 435 ILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESE 480
+LDL+ + + + T + + P Q + + E +
Sbjct: 421 VLDLQDRILHPHSPKNHYTSALPYEYAPNTPYQPIKEWLIEMLEGD 466
>gi|9631496|ref|NP_048160.1| ORF MSV089 Putative NTPase, Rabbit fibroma virus C5 (vaccinia D5R)
homolog, similar to PIR:G41700 [Melanoplus sanguinipes
entomopoxvirus]
gi|4049849|gb|AAC97809.1| ORF MSV089 Putative NTPase, Rabbit fibroma virus C5 (vaccinia D5R)
homolog, similar to PIR:G41700 [Melanoplus sanguinipes
entomopoxvirus]
Length = 834
Score = 75.1 bits (183), Expect = 5e-11, Method: Composition-based stats.
Identities = 58/314 (18%), Positives = 108/314 (34%), Gaps = 50/314 (15%)
Query: 415 FSITSDLLDSSSRFLGEQDGILDLETG------QKVKPTKELYI-TKSTGTPFVEGEPSQ 467
S ++D +++ + +GI DL+ + K K YI + E
Sbjct: 426 LSDSTDTYNTNPYLIQMCNGIFDLKNNIFIYGIEAKKYIKPNYIPLSYKNIEEMSEEEYN 485
Query: 468 EFLDL-------VSGYFESEEVMDYFTRC-VGMALLGGNKAQRFIHIRGVGGSGKSTLMN 519
+++ ++ C + +LL + + G SGK+T+
Sbjct: 486 NYMENYNMLVTVINNIIPENHKDRKIFECNISSSLL-QISKETITFLVGPTKSGKTTIKL 544
Query: 520 LIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIK 579
L+ FGN ++ + + N L +L G + SE+N D+ ++ IK
Sbjct: 545 LLAALFGNLFLTIPIIDYV---KQHNPHSPNAWLGKLNGKLVCFASESNACDKFDSQTIK 601
Query: 580 QMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIP-----F-- 632
MT + +R+ N + + T I N + D+A R VI F
Sbjct: 602 HMT-ERIIISRVLNSNEGDQHNYA-TQIIDTNIFPSIDITDNAILERLAVINIDHSYFIN 659
Query: 633 --------------------DKPIANRDASFAQKLET-KYTLEAKKWFLKGVKAYISKGL 671
+ I R+ +F+ K+E ++L + V+ Y L
Sbjct: 660 STKIDSVNENILKDRNNILDTRVIRPRNPNFSNKIENGDFSLALFNILKEWVRKYHLDEL 719
Query: 672 D-VDIPEVCLKAKE 684
+ PE +K
Sbjct: 720 KIIHTPEKFIKTTN 733
>gi|75675821|ref|YP_318242.1| ATPase [Nitrobacter winogradskyi Nb-255]
gi|74420691|gb|ABA04890.1| RecA-family ATPase [Nitrobacter winogradskyi Nb-255]
Length = 666
Score = 75.1 bits (183), Expect = 5e-11, Method: Composition-based stats.
Identities = 48/289 (16%), Positives = 89/289 (30%), Gaps = 50/289 (17%)
Query: 16 NGFKLIPLRLGDKRPQRL-----GKWEEQLLSSEKIDKL----PACGFGFVCGVGEQPLY 66
NG L+P+ G K + W E+IDK P C FG V L
Sbjct: 21 NGAALVPIPAGSKIATGIISSFKHDWSRNP---EQIDKWARENPGCNFGVV--AFASNLI 75
Query: 67 AFDIDSKDEKTANTFKDTFEILHGT-----PIVRIGQKPKILIPFRMNKEG---IKKKKT 118
DID+K + + L + +V Q P +
Sbjct: 76 IVDIDTKGDNGREEAWALWAELCASWGLPAALVPHVQSPSGGWHVYCTVPDGVDAATLRQ 135
Query: 119 TESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQ 178
++ +G ++I G A + + + Y +
Sbjct: 136 PDAIKGRINIRCIGYTVAAGSYY--DGRPY--------------------QLMPGAPPPH 173
Query: 179 EITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHH 238
L++ T + +++ R++ + L+ E S+++WI + A+
Sbjct: 174 PAPEGLIQHCSGGTRKVTEHRSRQGEHSLRDVRSMLAWMNERDAFDSYEDWISIGQALKI 233
Query: 239 ETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTF 287
G E+ Y + + KW+TF + G+ + F
Sbjct: 234 CF--WDDGLELWES-VTVAGRY---SCDQKWETFKDTDDGNAVTLATWF 276
>gi|229583958|ref|YP_002842459.1| Bifunctional DNA primase/polymerase [Sulfolobus islandicus M.16.27]
gi|228019007|gb|ACP54414.1| Bifunctional DNA primase/polymerase [Sulfolobus islandicus M.16.27]
Length = 865
Score = 74.8 bits (182), Expect = 6e-11, Method: Composition-based stats.
Identities = 51/273 (18%), Positives = 102/273 (37%), Gaps = 28/273 (10%)
Query: 8 EQAKQAIHNGFKLIPLRLGDKRP-QRLGKWEEQLLSSEKIDKLP---ACGFGFVCGVGEQ 63
+ A G +IPL+ +K P + K++++L + ++I K +CG
Sbjct: 7 DYALFYHTYGLSVIPLKPKEKVPLIKWEKYQKELATIDEIKKWFENNENNIAIICGKVSG 66
Query: 64 PLYAFDIDSKDEKTANTF-------KDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKK 116
L D D D + F + EI++ T +V+ G+ + + K
Sbjct: 67 NLVVIDFD--DAEIYEKFLKEVEKDSELAEIINNTWLVKTGK----GYHIYLRIDIDKPV 120
Query: 117 KTTESTQGHLDILGCGQYFVAYN-IHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFK 175
K + + +D+ G G Y VA IHP + K Y + + +++EE + +
Sbjct: 121 KIGKLQK--IDVKGEGGYVVAPPSIHP-SGKTYEFVRFSKTTG-HEIRVITEEQYKKILT 176
Query: 176 FFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMA 235
+ +T + D +I + + + T I LS +E HD + +
Sbjct: 177 ILENVTESTITD-TAIEKGEIRHDKKLSENTILRIIDILSPVYKE--GVRHDIVMYLSGW 233
Query: 236 VHHETRGSSKGKEIARRWSKQGSTYDEENFNYK 268
++ K++ + +E N +
Sbjct: 234 LYKAGIELESAKKLILLLC---DKFKDEECNDR 263
>gi|86750422|ref|YP_486918.1| hypothetical protein RPB_3311 [Rhodopseudomonas palustris HaA2]
gi|86573450|gb|ABD08007.1| hypothetical protein RPB_3311 [Rhodopseudomonas palustris HaA2]
Length = 1082
Score = 74.8 bits (182), Expect = 6e-11, Method: Composition-based stats.
Identities = 50/220 (22%), Positives = 72/220 (32%), Gaps = 44/220 (20%)
Query: 12 QAIHNGFKLIPLRLGDKRP-QRLGKWEEQLLSSEK-------IDKL-------------- 49
+ I NG +P+ P GK ++ S+ + K
Sbjct: 10 RLIANGCSPLPIGPRSADPRGPQGKSPARIRSNARGEPIWFHFKKWETFCDRQPHRFAFT 69
Query: 50 -----PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILI 104
P CG G CG L A DID D + +L + + G+ K L
Sbjct: 70 AELRDPECGIGIACGF--NNLVAVDIDRDD-----LIEPLLAVLPPMVVAKRGR--KGLT 120
Query: 105 PFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYN-IHPKTKKEYTWTT--PPHRFKVED 161
F E K T G LD + G V IHP T + Y WTT VE+
Sbjct: 121 VFYRGAEHWPKANYT----GFLDFIARGAQTVLPPTIHPDTGQPYAWTTERTLLDTPVEE 176
Query: 162 TPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNN 201
PLL+ D + K+ + + T ++
Sbjct: 177 LPLLTA-DHRKAMEAVLAAHGWQPKEDRQARTAVTAARSS 215
>gi|37626216|gb|AAQ96591.1| putative integrase [Vibrio phage VP16C]
Length = 791
Score = 74.8 bits (182), Expect = 6e-11, Method: Composition-based stats.
Identities = 58/430 (13%), Positives = 110/430 (25%), Gaps = 56/430 (13%)
Query: 10 AKQAIHNGFKLIPLRLGD--KRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYA 67
A+Q +G P P+ + + P+ G +
Sbjct: 5 AQQLKAHGLGAFPCLQNKMPAVPKGTSWKDWAHAELNALP-WPSDIVGVPI---PSGVVV 60
Query: 68 FDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGI-------KKKKTTE 120
D+D+ T + I + K T
Sbjct: 61 LDLDTYKGITREYVEAGAGFAIPWDAAHIQTTQSGGQHYAFRAPNWPVKNISNAKHNETG 120
Query: 121 STQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEI 180
LD+ G+ ++A T + Y T + E
Sbjct: 121 VQFEGLDVRSAGKGYIA------TGEPYYTPT--------HLGGALAMAFPQMLPPLPEG 166
Query: 181 TVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHET 240
P ++ + + + + I L + +EW+ V +++
Sbjct: 167 LRPWLEAVAHESSERVEVTDED----AKTIREALRHIDP---GETREEWVKVGLSLKSGF 219
Query: 241 RGSSKGKEIARRWSKQG--------STYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFY 292
+G + WS + Y E+ +WD+F E + +T
Sbjct: 220 GDDPQGLSLFDEWSSGALWRDGDEPANYVPEHIETQWDSFKAEGG----RTIATVYHKAI 275
Query: 293 HHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKIT 352
G P G+ A D + + F D+ ++ + +D I
Sbjct: 276 EGGWQPPAGINA---FDVFGEG---ATDSTTFAAIVDS---LQQHGGDPKQTQTLIDTII 326
Query: 353 ASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAG 412
A + + LS E +D + +K R SK T +
Sbjct: 327 ALPCSD-MQRAMLAATLSRELKDADLLTKEVRAQIARITGNTAAGAASKVPVTPKGQRLA 385
Query: 413 SIFSITSDLL 422
+ DL
Sbjct: 386 VNQPMHPDLW 395
>gi|291335727|gb|ADD95331.1| hypothetical protein cce_0723 [uncultured phage MedDCM-OCT-S05-C22]
Length = 651
Score = 74.4 bits (181), Expect = 8e-11, Method: Composition-based stats.
Identities = 45/270 (16%), Positives = 88/270 (32%), Gaps = 31/270 (11%)
Query: 53 GFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEG 112
G G+ + D+D + K L G PI+ + FR+ +E
Sbjct: 63 AVGVFTGIRGNGIVILDVD---RNLSKYLKAWGSSLDGAPIITSTKANAAKYLFRVPEEL 119
Query: 113 IKKKKTTESTQ---GHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEED 169
K + G +IL G+ V + +P K + P ++ ++ D
Sbjct: 120 WADVKGHGLRKEDGGDYEIL-WGRQGVVFGAYPGGK-----VSKPGQYLLD-------GD 166
Query: 170 VEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEW 229
+ + + + + ++I + + + + I LS + G+ D W
Sbjct: 167 LADIPTAPDWLLAEMKQPPRTINKKELDFTDRTQDEVQQIIFECLSVISPQG-KGTRDHW 225
Query: 230 IPVVMAVHHETRGSSKGKEIARRWSKQGSTY-----DEENFNYKWDTFDFEEIG-----D 279
+ + MA+H + G + WS Q Y D W +F +G
Sbjct: 226 VKIGMAIHSALP-TDMGLHLWASWSCQDPDYASEWEDSNPCEEVWYSFKGNGVGLGSLIW 284
Query: 280 TAKKRSTFTSLFYHHGKLIPKGLLASRFSD 309
A + F + I + A ++
Sbjct: 285 LADREDPKRKRFSEDTRKIVESAEAKVVTE 314
>gi|312891663|ref|ZP_07751173.1| Bifunctional DNA primase/polymerase [Mucilaginibacter paludis DSM
18603]
gi|311295847|gb|EFQ73006.1| Bifunctional DNA primase/polymerase [Mucilaginibacter paludis DSM
18603]
Length = 827
Score = 74.0 bits (180), Expect = 9e-11, Method: Composition-based stats.
Identities = 130/877 (14%), Positives = 278/877 (31%), Gaps = 180/877 (20%)
Query: 8 EQAKQAIHNGFKLIPLRLGDKRPQRLGKWEE---QLLSSEK----IDKLPACGFGFVCGV 60
+A + +G LIP++ DK P KW++ ++ + + I+ +CG
Sbjct: 6 PKALSYLKDGISLIPVKEVDKTP--FFKWKDFQSKIATEGELWTSIEFYGTSSLAIICGK 63
Query: 61 GEQPLYAFDIDSK-----DEKTANTFKDTFEILHGTPIVRIGQKPKILIP--FR---MNK 110
+ D+D K D N ++ + L +RI + P +R
Sbjct: 64 VSGNIEVIDVDVKYKPGIDAILMNDIRNFYPDLFSR--LRIHKTPSGGFHIIYRVGGHEV 121
Query: 111 EG---------------IKKKKTTESTQGHL---DILGCGQYFV-----AYNIHPKTKKE 147
G ++K K + + + G G Y + Y +H
Sbjct: 122 PGNLKLAGRPTLEAEIELQKAKGVKRPNKEVNFLETRGEGGYILSDLCNGYTLHKD---- 177
Query: 148 YTWTTPPHRFKVEDTPLLSEED---VEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQ 204
P+++ E+ + L + + EI K K + + N
Sbjct: 178 ------------NPIPVITWEERCSLITLCQTYNEIIKEAPKPKPNKSQESIYDENPFEH 225
Query: 205 YTNR-EITAFLSCFGEEFYNG-SHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDE 262
Y N T LS FG +F + H W + +K K I ++ +
Sbjct: 226 YNNTVNPTELLSGFGWKFSHENPHYIWYTRPDKDKGVSASWNKSKRIFYIFTSSTELQES 285
Query: 263 ENFNYKWDTFDFEEIGDTAKKRSTFTSLFY--------HHGKLIPKGLLAS-RFSDAYNK 313
++ + K + +Y K + +GL+ S +
Sbjct: 286 -------RGYNPATVLSELKFDGDKSKTYYFLTQNGFGKVKKQVEQGLVKKAALSGSGIP 338
Query: 314 AMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLT------LDKITASIMNFLVSMKEDVF 367
A FS K F D K D + W +D++ + +
Sbjct: 339 ANFSPDAKKTF---EDLKISLHDDHPHGIFWEQDENDRFRIDRLGLYEVANKLGFATYRG 395
Query: 368 DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEA----GSIFSITS-DLL 422
D+ +D +PR +++T E+ + K + EA F+I+ + +
Sbjct: 396 DIV-RIKDRLIYKVTPRLFYDTLRDYIKEEDGNLYKDICNAYEAFIQRSGDFTISRINQI 454
Query: 423 DSSSRF-----------LG-----EQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPS 466
D ++ + DG ++ + ++ K +
Sbjct: 455 DENNILKDTYDTCYKLYINTAVKITADGYKEVPYSEIIEHIWHD---KIMQRKWDMSIVP 511
Query: 467 QEF--LDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRG--------------VG 510
EF L+ + + D + +G L NK + G G
Sbjct: 512 SEFKYLEFLHYAIG---INDQVKKVIGY-LSHDNKDEN----TGYIITLVEKCPDPKMGG 563
Query: 511 GSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN 570
GSGK+ N+++ + + + + L G R+ +++ +
Sbjct: 564 GSGKNIFGNILR-----------NTTTVCTVAGSQVKFSEKLLQSWNGERVFFMADVPK- 611
Query: 571 DEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVI 630
+ + + +K+M+ G + + + S P P ++ N + + D RR I +
Sbjct: 612 -KFDFSYLKEMSTG-YGLVKKLWKDDRSVGPDEM-PKLLVNTNFSFDDSDGGLKRRIIPL 668
Query: 631 PFDKPIANR---DASFAQKL----------ETKYTLEAKKWFLKGVKAYISKGLDVDIPE 677
F D F K + + + V+ Y++ + E
Sbjct: 669 EFTDFFTRCGGVDVHFNCMFPTSNNSNSGWTEKDWMGFDCFIAECVQQYLAANCKITPTE 728
Query: 678 VCLKAKEEERQGTDTYQA----WIDDCCDI-GENLWEESHSLAKSYSEYREQELNYDRKR 732
+ E++ + + +I++ + +++ + Y +RE+ ++
Sbjct: 729 LSHGGWEKQFKQQ--FGQHTFEFINENFERWTNSVFISTKEFNNEYKAFREENNL--KEG 784
Query: 733 ISTRTVTLNL----KQKGFIGGIKREKIEKEWKSKRI 765
+S T+ + L ++ G++ ++ + K K
Sbjct: 785 LSGITMNMALKSYCERYGYVFNGNKQHSITKDKGKNF 821
>gi|62362410|ref|YP_224275.1| hypothetical protein LPPPVgp44 [Listonella phage phiHSIC]
gi|58220032|gb|AAW67544.1| putative phage protein [Listonella phage phiHSIC]
Length = 815
Score = 74.0 bits (180), Expect = 9e-11, Method: Composition-based stats.
Identities = 52/306 (16%), Positives = 99/306 (32%), Gaps = 75/306 (24%)
Query: 13 AIHNGFKLIPLRLGDKRP----------------QRLGKWEEQLLSSEKI----DKLPAC 52
I GF ++ L K +L W+ + + +++ D P
Sbjct: 6 YIDAGFSIVELHPMTKEKHCTCFKGKECAMAGKHPKLQNWQSKQYTEDELVAIEDSSPDS 65
Query: 53 GFGFVCGVGEQPLYAFDID------------SKDEKTANTFKDTFEILHGTPIVRIGQKP 100
V G DID KD T + +F + G
Sbjct: 66 FGALVGGYL-----VIDIDPRNDGDNSYEQLCKDTNTDYEKESSFVVFTGG--------- 111
Query: 101 KILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVE 160
+ K+ +D G A ++H K+ Y ++
Sbjct: 112 -GGKHIYFKAPEGVQLKSKLGQYNGVDFKSSGFVVGAGSLH-KSGLLYE--------SIK 161
Query: 161 DTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEE 220
P D+ K E+ +K + P + + + ++I L C +
Sbjct: 162 GAP----SDISEPPKKLVELL------EKKVNPKNSAFSLPEDKVDQQKIQDMLDCIDPD 211
Query: 221 FYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTF----DFEE 276
+++W+ + MA+H ET +G ++ WS GS Y+++ ++KW +F +
Sbjct: 212 ---CDYEDWLHIGMAIHDET--CGEGFDLWDAWSSNGSKYNQKEMDFKWHSFGKSPNPVT 266
Query: 277 IGDTAK 282
IG +
Sbjct: 267 IGTLIR 272
>gi|17158691|ref|NP_478202.1| hypothetical protein alr7555 [Nostoc sp. PCC 7120]
gi|17134640|dbj|BAB77198.1| alr7555 [Nostoc sp. PCC 7120]
Length = 332
Score = 74.0 bits (180), Expect = 9e-11, Method: Composition-based stats.
Identities = 52/310 (16%), Positives = 93/310 (30%), Gaps = 58/310 (18%)
Query: 18 FKLIPLRLGDKRPQRLGKWE---------EQLLSSEKIDKLPA------CGFGFVCGVGE 62
++++P KRP +WE + L ++ G VCG
Sbjct: 19 WRIVPTF--GKRPLGK-EWEKNTYSPKELQTELVRRRLKFWTNNRLITPTGVALVCGFNH 75
Query: 63 --QPLYAFDID------------------SKDEKTANTFKDTFEI---------LHGTPI 93
L A D D ++ T +DT L T
Sbjct: 76 PQGYLVAIDCDGETSWRHIIQINEHLEPKELNQLTPAETRDTPMESLHDRAQKYLPPTIA 135
Query: 94 VRIGQKPKILIPFRMNKEGIKKKKTTESTQG---HLDILGCG-QYFVAYNIHPKTKKEYT 149
G+K + + + K + K+ + G HL+ G + + HP+ + Y
Sbjct: 136 FTSGRKYRSQRLYLIPKSKAWEVKSRKIKTGKDEHLEFRGKNLASILPPSFHPE-GRNYR 194
Query: 150 WT--TPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTN 207
W P ++E P + + ++ + K + + + +
Sbjct: 195 WLPGCSPSERQIEIAPDWVIAQMLAKQEKTRKFNLLKEKYNRRYGVDRYAHLIPSIESNI 254
Query: 208 REITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNY 267
+ L F + + WI V MA+ S + WS+ Y Y
Sbjct: 255 QTALVLLEVIHPRFAD-DYHSWIQVGMALKSV---SPILFKAWDTWSQLSPKYKPGECAY 310
Query: 268 KWDTFDFEEI 277
KW +F I
Sbjct: 311 KWQSFKKTGI 320
>gi|78214079|ref|YP_382858.1| ATPase-like [Synechococcus sp. CC9605]
gi|78198538|gb|ABB36303.1| ATPase-like [Synechococcus sp. CC9605]
Length = 355
Score = 74.0 bits (180), Expect = 1e-10, Method: Composition-based stats.
Identities = 28/220 (12%), Positives = 75/220 (34%), Gaps = 12/220 (5%)
Query: 553 LIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612
++ L G + I +++ + + + + + + N +++ + + N
Sbjct: 26 MLGLHGKKAAIDYDSS-GVVNDPGQFNSIVSNEPVQVWRKFSNK-TDARLGVVIWRLFND 83
Query: 613 HLFVRNPD--DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKG 670
V + + RR I + + +D + +KL + +W + I K
Sbjct: 84 LPGVSDSGGVEGMQRRIITFSIGQSVRRKDPNLKEKLCEEL-PGILQWAWSLSRDEIRKA 142
Query: 671 LDVDIP-EVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYD 729
D +A E + + ++ + + L + Y ++ E
Sbjct: 143 FDAAGRIASISEASIEAQLNASPWLKFLIE-VYPDGIQDIAAKKLFERYQQWCADEGR-- 199
Query: 730 RKRISTRTVTLNLKQKGFIGGIKREK---IEKEWKSKRII 766
R ++ L LK+ G++ + +++E K+
Sbjct: 200 RAVLNNTNFGLKLKKLTAPKGVEGSRLPIVKRETKTANRY 239
>gi|124378230|ref|YP_001029426.1| GfV-C21-ORF1 [Glypta fumiferanae ichnovirus]
gi|124270637|dbj|BAF45562.1| GfV-C21-ORf1 [Glypta fumiferanae ichnovirus]
Length = 574
Score = 73.6 bits (179), Expect = 1e-10, Method: Composition-based stats.
Identities = 32/172 (18%), Positives = 64/172 (37%), Gaps = 6/172 (3%)
Query: 473 VSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIR--GVGGSGKSTLMNLIKYAFGNQYV 530
+ F + D+F + L G + F+ + G G G +TL++L+ FG YV
Sbjct: 274 FNKLFPLKCERDWFLSFIARILNGKRDEELFVLLTDEGKGQCGITTLISLLSIVFGKYYV 333
Query: 531 INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR 590
N ++ + + + + L R+++ + D +N IK +T
Sbjct: 334 SNTRI--VVDEKSQDNHYIHEGMYDLEKKRLLVADRLTKKDTLNCCVIKALTAESNHIIE 391
Query: 591 LNYGNTYSESPAS--FTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD 640
+Y N++ + F + N D + R +V P ++
Sbjct: 392 WDYDNSHIKYALQTGFIMVVTDNNIPKFDKTDKHFRERMVVCPMRSRFVKQN 443
>gi|220915145|ref|YP_002490449.1| ATPase-like protein [Anaeromyxobacter dehalogenans 2CP-1]
gi|219952999|gb|ACL63383.1| ATPase-like protein [Anaeromyxobacter dehalogenans 2CP-1]
Length = 548
Score = 73.6 bits (179), Expect = 1e-10, Method: Composition-based stats.
Identities = 60/477 (12%), Positives = 142/477 (29%), Gaps = 59/477 (12%)
Query: 323 HFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKN--- 379
+ + +AW+ + + + D+I + + ++ +++ S D+ K
Sbjct: 103 RVWHERERRAWHAWTRRAAKTFFVGQDEIEQMVAHLGLAQRDEPKASSWNDFDDGKILEH 162
Query: 380 -----SKSPRFWFNTDYRRQNVEENSKAKSTAQSLEA---GSIFSITSDLLDSSS--RFL 429
+ + R + + + + N + ++T Q A ++ + R L
Sbjct: 163 CVPILNHAFRLLVDRNGTERIFQVNDRNEATLQQSNANIHKALHDALKAEFGTVPPARLL 222
Query: 430 GEQDGILDLETGQKVK-PTK-----ELYIT-KSTGTPFVEGEPSQEFLDLVSGYFESEEV 482
+ + ET + + P + + K E P + + ++ + E
Sbjct: 223 EASNVLWKKETARLAEEPEPFCFAGDDRVCFKRFDWKPAE-APFPAWEEFLTRLSDREAF 281
Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542
M + N++++++ +RG G GKS ++ ++ FG N
Sbjct: 282 MAFVW----SCFEKKNRSRQYLWLRGEGQDGKSKVLGVLLEVFGPAGAAI--------NN 329
Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602
L G R+VI + ++ T GD + ++
Sbjct: 330 SHVEKGNQFFFSALYGKRLVIYPDCKNAKFGMKEIVRNCTSGDPVAVEFKGETPFTTVLR 389
Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKG 662
F+ N + A R I + + + D ++ ++L+ + FL
Sbjct: 390 -IRLFVASNTKPEFTSQ-AADRSRIIYVEVAESASKDDPTWEERLKAQLPG-----FLWS 442
Query: 663 VKAYISKGLDVDIPEVCLKAKEEERQGTDTY--QAW---IDDCCDIGENLWEESHSLAKS 717
KA + + + + + D + +A
Sbjct: 443 CKATYERVCAHHGDIPVSEQTKAMLDEAAVAFEEQFHDIFDAHFSEAPGEAAPAKPVATI 502
Query: 718 YSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPA 774
Y + G + + K R+ +GL P+
Sbjct: 503 LRGYGMNNNQI-------NDFKAWM-------GRVHRVVYRPRKDGRVYEGLAFLPS 545
>gi|323173146|gb|EFZ58777.1| hypothetical protein ECLT68_2560 [Escherichia coli LT-68]
Length = 565
Score = 73.6 bits (179), Expect = 1e-10, Method: Composition-based stats.
Identities = 91/604 (15%), Positives = 170/604 (28%), Gaps = 111/604 (18%)
Query: 26 GDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTF 85
G ++ + W +++ + +C + A D D D ++
Sbjct: 27 GQRKVVGIPDWANYVVTENDFARWSNEPDYGICVRTGDGVVALDCDINDAGMQEIVRNII 86
Query: 86 EILHGTPIVRIGQKP--KILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPK 143
G R + K L ++ + K+ E +++L GQ FVA HP
Sbjct: 87 LSCLGELPPRRWRADSHKCLYLIAVDGDYRKRGHRLEGENKQIELLAKGQQFVACGTHP- 145
Query: 144 TKKEYTWTTPPHRFKVEDTPL-LSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNN 202
+ W + PL ++ E +E L++ + + S T
Sbjct: 146 AGERIQW-----DCGLPGEPLKITSEQLESLWQRLADNLP--------VKDSYTAGAGRQ 192
Query: 203 RQYTNREITAFLSCFGEEFYNGSHDEWIPV-VMAVHHETRGSSKGKEIARRWSKQGSTYD 261
R LSC + D W+ + + GS + + R S+ +
Sbjct: 193 RD---------LSCVDPSATDDVAD-WLDANGWTLSVSSDGS-RNLKPFRDESEYSNGCS 241
Query: 262 EENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDA-----YNKAMF 316
E + Y E G +T L L G S F D +K F
Sbjct: 242 ETSIKYFPKGTGGFEQGHFKSMHNTDAGLT-DADWLEGYGYTQSLFEDLTVAEDGDKPEF 300
Query: 317 SIYKKG-------HFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDL 369
+ F+Y + L + M + S K +
Sbjct: 301 TDINTDMTAHFLERFIYVIEGDQ------------VCDLSRPPYQCMMDMKSFKNLMAPY 348
Query: 370 SEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFL 429
PE + + + W ++R + + E + K AG I + + ++
Sbjct: 349 QFPPEGKGQPVPATKRWI--EHRHKKIAETTGYK-----PGAGRIIERFDGRFEINEFYM 401
Query: 430 GEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRC 489
+ + +K + FL+ ++ ++F
Sbjct: 402 P--------------EHPRTADTSKVS-----------TFLNHMAYLVPDAWQREFFIAR 436
Query: 490 VGMALLGGNKAQRFIH-------IRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542
+G + +R G G S LM G + N+
Sbjct: 437 LGWMV--QRPERRCPISILHVATAHGTGRGWVSQLME---RVLGPWNCARTRMKILCDNQ 491
Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINA--AKIKQMTGGDCMTARLNY--GNTYS 598
+ L + + I E END+ KI+ + Y +
Sbjct: 492 FHD---------YLYNTLLCTIDEVRENDKRYEVNDKIRDVLTEPRFEVNRKYGSKKRWI 542
Query: 599 ESPA 602
+PA
Sbjct: 543 YTPA 546
>gi|320169592|gb|EFW46491.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 109
Score = 72.8 bits (177), Expect = 2e-10, Method: Composition-based stats.
Identities = 31/111 (27%), Positives = 49/111 (44%), Gaps = 10/111 (9%)
Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
+V+ SE E +N +K++TG D R YG + P +F PF N+ V D
Sbjct: 1 MVVFSELEEGVPMNEVFVKEITGEDGTGFRELYGKEVN-RPITFVPFFSTNEIPQVT-RD 58
Query: 621 DAWWRRYIVIPFDKPIANR-------DASFAQKLETKYTLEA-KKWFLKGV 663
A WRR + + ++ D ++TK LE+ WF++G
Sbjct: 59 PALWRRLTNVQWSAMAEDQKPGVYKADPELKDLVKTKEYLESWLYWFIQGA 109
>gi|323448180|gb|EGB04082.1| hypothetical protein AURANDRAFT_67508 [Aureococcus anophagefferens]
Length = 319
Score = 72.8 bits (177), Expect = 2e-10, Method: Composition-based stats.
Identities = 54/258 (20%), Positives = 86/258 (33%), Gaps = 42/258 (16%)
Query: 449 ELYITKSTGTPFVEGEPSQEFLDLVSGYF--------ESEEVMDYFTRCVGMALLGGNKA 500
+++++ S G + + S E +D+ + E+ ++ + L N
Sbjct: 10 DVFLSWSCGYDYPQEPISDEIIDIFETWLDKYARAANETVDMKADIKTMIVETLCDKNSK 69
Query: 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSR 560
+R + G GG+GKS L NL+ G +Y +N + + EA NP + R+ R
Sbjct: 70 ERAFFLMGEGGNGKSVLCNLLCNLLG-EYAVNVPFETLT--KSIEAEGKNPFIKRMRYKR 126
Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA--SFTPF--IVPNKHLFV 616
V T D + R + + P +F F
Sbjct: 127 CVCS-------------TTLATNKDEIRCRDLHEKLQDQKPFYGTFKIIHPFNGESIQFS 173
Query: 617 RNPDDAWWRRYI----VIPF---------DKPIANRDASFAQKLETKYTLEAKKWFLKGV 663
D A RR F D+ I RD KLE +T KW K +
Sbjct: 174 GAVDYATKRRITCQQAPNRFVEGYDSENKDENILPRDYELIDKLEL-FTPYLWKWLEKDI 232
Query: 664 KAYISKGLDVDIPEVCLK 681
K Y GL +
Sbjct: 233 KDYYKNGLPTYSDDFMKS 250
>gi|257455559|ref|ZP_05620789.1| bifunctional DNA primase/polymerase domain protein [Enhydrobacter
aerosaccus SK60]
gi|257447025|gb|EEV22038.1| bifunctional DNA primase/polymerase domain protein [Enhydrobacter
aerosaccus SK60]
Length = 768
Score = 72.4 bits (176), Expect = 2e-10, Method: Composition-based stats.
Identities = 36/234 (15%), Positives = 66/234 (28%), Gaps = 23/234 (9%)
Query: 46 IDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIP 105
K P L A DID ++ T + +
Sbjct: 68 WGKYPQANIAIFLAGS--GLCAVDIDPRN-GGDYTIEVLESEHGKIDSDVLQLTGGGGEH 124
Query: 106 FRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLL 165
K +G +D G Y +A + + Y W PL
Sbjct: 125 RVFLLPSGDVKLPGTLGKG-VDFKSNG-YIIAEPSSHISGQSYVWEMSSD-------PLA 175
Query: 166 SEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGS 225
L + + + ++N+ Y ++ L G +
Sbjct: 176 GAVPSP-LPDWIRSFNINAAHASNETGTLHNG-MSDNQYY---DVLEALQFIGSD----D 226
Query: 226 HDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGD 279
D W+ V MA+ G + ++ WS+ S +D+ + W +F + +G
Sbjct: 227 RDTWLNVGMALQAS--GDKRAYQMWCDWSQASSKFDQNDQYRVWRSFKGKGLGS 278
>gi|56479563|ref|YP_161152.1| hypothetical protein ebA7287 [Aromatoleum aromaticum EbN1]
gi|56315606|emb|CAI10251.1| hypothetical protein ebA7287 [Aromatoleum aromaticum EbN1]
Length = 833
Score = 72.4 bits (176), Expect = 3e-10, Method: Composition-based stats.
Identities = 81/554 (14%), Positives = 169/554 (30%), Gaps = 58/554 (10%)
Query: 261 DEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYK 320
D+++F + + I D A + + + A + A F +
Sbjct: 274 DDDSFGHCRECRAPVRIADGADCPACSKPHRCENAGVTRASSAAVAVGGRHVAAKFVDEE 333
Query: 321 KGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNS 380
+ A + ++ + + + + +P K +
Sbjct: 334 GRWAKFQAQGHKITDYNDLHLAEGLPIVRAQVEEALRTVGWQAPTSAAAAPQPGGEGKPA 393
Query: 381 KSPRFWFNTDYRRQNV----EENSKAKSTAQSLEAGSIFSIT-SDLLDSSSRFLGEQDGI 435
P + R + +E + + + +I S L + I
Sbjct: 394 LRPIETLDELLERFALIYGEKEAVFDRQERMIVPLAGMRNICISRELHRRWMEHPTK-AI 452
Query: 436 LDLETGQKVKPTKELYIT--KSTGTPFVEGEPSQEFL-DLVSGYFESEEVMD----YFTR 488
+ L+ K+ IT G P E L DL++ +EE D + +
Sbjct: 453 VRLDNVGFDPTEKDRKITCNTYAGWPTKPKAGCCEMLIDLLAYLCSAEENADAVYQWLMK 512
Query: 489 CVGMAL-LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAG 547
+ + G K Q + + G G+GKS I +G Y + + I +R
Sbjct: 513 WLAYPIQRPGAKMQSAVVMHGPQGTGKSQFFKAISSIYG-PYGLTINQAAIENHRNTWLA 571
Query: 548 KANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPF 607
L + +R NA +K++ G+ + + N Y E
Sbjct: 572 SRLFILAEEVVAR------QELYQVKNA--LKELVTGETVYVDPKFVNAYEEK-NHVNIV 622
Query: 608 IVPN-KHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
N + V DD RR++V+ P A + F + ++ + G+ A
Sbjct: 623 FNSNEEMPIVLEDDD---RRHLVVR--TPYAPQPEDFYRAVKREIEEG-------GIAAL 670
Query: 667 ISKGLDVD---------IP-EVCLKAKEEERQGTDTYQAWIDDCCD-----IGENLWEES 711
+ LD+ P A ++ D+ + + I + +
Sbjct: 671 HAHLLDLPLGDFTPHTKPPMTASKAALQD--LALDSTTRFYREFVAGAIEGIKPGVVAIA 728
Query: 712 HSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771
+ +Y + + + K + L++K I ++ + + K G+
Sbjct: 729 TDVFDAYRTWCNR---INVKPAPMPRLINALEKKHRIECARKRYLGADGK-VMGPHGVCF 784
Query: 772 KPAFESVDDNSNII 785
P + D + I+
Sbjct: 785 IPEYREQPDRTRIL 798
>gi|78067109|ref|YP_369878.1| virulence-associated E family protein [Burkholderia sp. 383]
gi|77967854|gb|ABB09234.1| Virulence-associated E family protein [Burkholderia sp. 383]
Length = 761
Score = 72.1 bits (175), Expect = 3e-10, Method: Composition-based stats.
Identities = 74/493 (15%), Positives = 143/493 (29%), Gaps = 85/493 (17%)
Query: 153 PPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITA 212
P F+++D P Y+ + + P+ + ++ I+ +
Sbjct: 205 PLDSFELDDMPK------AYVTEMDWPSSAPVPRAEREIVVPPPAVVAPAEFGALKSALD 258
Query: 213 FLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTF 272
+ GE +D W V+ VHH ++GS +G + +S + S YD W +
Sbjct: 259 AIPNGGEN--ELDYDSWRNVLFGVHHASQGSDEGLALVHEFSARSSKYDPAKTERDW-GY 315
Query: 273 DFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKA 332
+ G T ++ HG P + F +
Sbjct: 316 AGKNQGTPI-TIGTIKAMAAAHGWQDPAREPSE----------------DDFDVVPVDEQ 358
Query: 333 WYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSP--------- 383
+ +I A N +V+ + ++ ++
Sbjct: 359 ----EPPRPGYRRNGKGEILALAEN-IVTAVRAPHECGWHIRYDDFRAEVMLADVADPRG 413
Query: 384 -RFWFNTDYRR--QNVEENSKAKSTAQSLEAGSIFSITSDLLD-SSSRFLGEQ-DGILDL 438
R + + DY R +E K + ++L G + +D + G Q DG+
Sbjct: 414 LRAFTDPDYTRLQIQLERRGFLKLSKEALRDGVGLVADDNRIDSAVEWLAGLQHDGV--- 470
Query: 439 ETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCV-GMALLGG 497
P E ++ + V Y + G L G
Sbjct: 471 -------PRIETFLRDYMAVEDTPYARA---------------VSRYLWTALAGRVLSPG 508
Query: 498 NKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLM 557
+A + G G+GK+ + + A + + N S + +
Sbjct: 509 CEAPMVPVLIGEQGAGKTRAVKAL-----------VPAQEFYCELKLDERDDNASRM-MR 556
Query: 558 GSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVR 617
G +V + E +A IK Y F N+ F+
Sbjct: 557 GRLVVELGELRGLHTRDAESIKAFISRTHENFVPKYKEFSVTFARRFLFVGTTNQDEFL- 615
Query: 618 NPDDAWWRRYIVI 630
D+ RR++ +
Sbjct: 616 -ADETGERRWLPV 627
>gi|225575522|ref|ZP_03784132.1| hypothetical protein RUMHYD_03614 [Blautia hydrogenotrophica DSM
10507]
gi|225037272|gb|EEG47518.1| hypothetical protein RUMHYD_03614 [Blautia hydrogenotrophica DSM
10507]
Length = 616
Score = 72.1 bits (175), Expect = 4e-10, Method: Composition-based stats.
Identities = 37/169 (21%), Positives = 55/169 (32%), Gaps = 11/169 (6%)
Query: 2 PVMQWKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKL----PACGFGFV 57
V KE A + H G + P++ K P ++ + +I+ P G
Sbjct: 8 AVASMKEWALRYAHLGLAVFPVKEKGKAPATPHGCKDATTDALQIETWWNINPQHNIGIA 67
Query: 58 CGVGEQPLYAFDIDSKDEKTANT---FKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIK 114
G L D+D +EK N K+ + P I +
Sbjct: 68 TGSRSGGLVVIDLDIDEEKGKNGYETLKEWQKEHGDLPETWISITGNGGYHYFYRDTAAN 127
Query: 115 KKKTTESTQGHLDILGCGQYFVAYN-IHPKTKKEYTWTTPPHRFKVEDT 162
K K +DI G G Y VA IHP Y W P +++
Sbjct: 128 KNKVALYD--GVDIRGEGGYIVAPPSIHPN-GHTYEWEQEPGEYEIAQV 173
>gi|49188486|ref|YP_025316.1| hypothetical protein pIT3_6 [Sulfolobus solfataricus]
gi|46560102|gb|AAT00521.1| RepA [Sulfolobus solfataricus]
Length = 915
Score = 70.9 bits (172), Expect = 7e-10, Method: Composition-based stats.
Identities = 47/208 (22%), Positives = 76/208 (36%), Gaps = 20/208 (9%)
Query: 8 EQAKQAIHNGFKLIPLRLGDKRPQRLGK-WEEQLLSSEKIDKL---PACGFGFVCGVGEQ 63
+ A + G ++PL DK P K ++E+L + E++ K P+ + G
Sbjct: 36 DYALYYVSVGLSVVPLVPKDKVPIIEWKPYQERLPTEEEVRKWFRDPSTNIAIITGAVSG 95
Query: 64 PLYAFDIDSKDEKTANTFKDTF---EILHGTPIVR-IGQKPKIL-IPFRMNKEG--IKK- 115
L D D D F D IL I + K I FR++ + K+
Sbjct: 96 NLVGIDFD--DPNVYTDFADKLFYDPILGDKAYSTWITKTGKGYHIYFRIDVDKGVFKQI 153
Query: 116 -KKTTESTQGHLDILGCGQYFVAYN-IHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYL 173
++ + H+D+ G YFVA IHP + PP + +LS ++ E L
Sbjct: 154 FRQKIDIEGKHIDMKAEGGYFVAPPSIHPSGSRYEFLAGPPMNKEPA---VLSLKEWERL 210
Query: 174 FKFFQEITVPLVKDKKSIIPSKTWTNNN 201
K + + P N
Sbjct: 211 LKLL-GVEPWEGLLRILNAPDSATPGNG 237
>gi|251793969|ref|YP_003008701.1| phage DNA primase [Aggregatibacter aphrophilus NJ8700]
gi|247535368|gb|ACS98614.1| phage DNA primase [Aggregatibacter aphrophilus NJ8700]
Length = 239
Score = 70.9 bits (172), Expect = 9e-10, Method: Composition-based stats.
Identities = 34/240 (14%), Positives = 81/240 (33%), Gaps = 23/240 (9%)
Query: 557 MGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV 616
M +++ E + + +K ++ GD + + + + + IV N+
Sbjct: 1 MNKTLILCPEQSRYGG-DGGGLKSISTGDLVNIDPKHKSKFKAIIPAIVL-IVNNEPTRF 58
Query: 617 RNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD 674
+ RR ++ FDK + + R+ K+E + K ++ K + +
Sbjct: 59 TERNGGIERRRVIFHFDKVVQESKREPHLMDKIEAEAGGIIYK-LIQAFKNPLDAKKALI 117
Query: 675 IPEVCLKAKEEERQGTDTYQAWID------DCCDIGENLWE---ESHSLAKSYSEYREQE 725
+ +A E + +D + + +G + L +Y + E
Sbjct: 118 QQQESAEALEI-KMNSDHLAVFCSYFLTSQESNGLGIGNAKTGLPRTHLYPAYLVFTEAN 176
Query: 726 LNYDRKRISTRTVTLNLKQKGFIG-----GIKREKIEKEWKSKRIIKGLKLKPAFESVDD 780
+ ++ + L+Q G R++I + R I + K E ++
Sbjct: 177 N--IQNALTLNNFSEALRQ-GLAQHKNKYPYARKRITSGMEKGRYITNVHFKDFDEFYNE 233
>gi|197322383|ref|YP_002154656.1| putative superfamily III helicase [Feldmannia species virus]
gi|197130450|gb|ACH46786.1| putative superfamily III helicase [Feldmannia species virus]
Length = 609
Score = 70.1 bits (170), Expect = 1e-09, Method: Composition-based stats.
Identities = 38/286 (13%), Positives = 95/286 (33%), Gaps = 50/286 (17%)
Query: 451 YITKSTGTPFVEGEPSQEFL-DLVSGYFESEE----VMDYFTRCVGMALLGGN---KAQR 502
Y P + E F +E ++ + +G N Q
Sbjct: 279 YFRHEMPIPDSPVKAYSEINTAHFESIFAPQEYNADMIKWVFVFIGRLFYEVNEKDSWQV 338
Query: 503 FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMG---- 558
++GV G+GKST++ +++ + + G + ++ R G
Sbjct: 339 IPFLKGVAGTGKSTVIKVVQKLY----------------NQRDIGVVSNNIERQFGPSTI 382
Query: 559 --SRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS---ESPASFTPFIVPNKH 613
+I I+ E + ++ A + M G+ ++ + + + P + N+
Sbjct: 383 FDKKIFIVPEMKGDFSLDVAVFQSMITGEEVSLAVKHDSPCVGRWVVPG----IMAGNES 438
Query: 614 LFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAKK-------WFLKGVK 664
++ + RR +V F + + + + + W ++
Sbjct: 439 PNWQDKSGSISRRVVVFDFPNKVPAETSNPNLFANIVESEIPAIIRKATLAYHWAVE--- 495
Query: 665 AYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID-DCCDIGENLWE 709
Y + + +P + K++ + T+ A+++ D I + +
Sbjct: 496 TYGNADIWTALPPRICEEKKKLQFATNPLFAFMNSDRVQIDVDEYT 541
>gi|13242580|ref|NP_077594.1| EsV-1-109 [Ectocarpus siliculosus virus 1]
gi|13177383|gb|AAK14527.1|AF204951_109 EsV-1-109 [Ectocarpus siliculosus virus 1]
Length = 606
Score = 70.1 bits (170), Expect = 1e-09, Method: Composition-based stats.
Identities = 41/255 (16%), Positives = 99/255 (38%), Gaps = 31/255 (12%)
Query: 472 LVSGYFE----SEEVMDYFTRCVG---MALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524
L F+ ++++ + VG + + Q ++GV G+GKST++ +I+
Sbjct: 297 LFDSIFQPQRWDQDMLWWMYVFVGRLFYEVSELDSWQVIPFMKGVAGTGKSTVIKVIQMM 356
Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGG 584
A+ I N + G L + I ++ E + ++ A + M G
Sbjct: 357 -----YNRADVGVISNNIEKKFG-----LSTIYNKTIFVVPELKGDFAMDQADFQSMVTG 406
Query: 585 DCMTARLNYGNTYS---ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR-- 639
+ ++ + G+ + +P + N+ + + RR +V PF +
Sbjct: 407 ETLSMPVKNGSPITGVWTTPG----IMAGNESAKWEDKSGSISRRIVVFPFSHKVPEDKV 462
Query: 640 DASFAQKLE-TKYTLEAKKWFL---KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQA 695
+ +++ T+ +K L V+ + + + +P + K++ + T+ A
Sbjct: 463 NPGLMDEIQDTELPAIIRKSALAYRDAVQRFGNGDIWQALPSRIREQKKKLQYSTNPLFA 522
Query: 696 WID-DCCDIGENLWE 709
+I+ D + + +
Sbjct: 523 FINSDNVSLSDEEYT 537
>gi|315501675|ref|YP_004080562.1| bifunctional DNA primase/polymerase [Micromonospora sp. L5]
gi|315408294|gb|ADU06411.1| Bifunctional DNA primase/polymerase [Micromonospora sp. L5]
Length = 719
Score = 69.8 bits (169), Expect = 2e-09, Method: Composition-based stats.
Identities = 41/185 (22%), Positives = 72/185 (38%), Gaps = 26/185 (14%)
Query: 16 NGFKLIPLRLGDKRPQRLG--KWEEQLLSSEKIDKL---------PACGFGFVCG----V 60
N ++ IPL G K P W S E++++ P G G
Sbjct: 18 NFWRPIPLPPGKKSPVPDAVTGWSNPQPSREQVEEWVTSGRFTVDPKNGVKLRAGNIALR 77
Query: 61 GEQPLYAFDIDSKDEK-TANTFKDTFEILHGTPIV-RIGQKP---KILIPFRMNKEGIKK 115
L D+D+ D+K A TFK E L P R + + FR + G ++
Sbjct: 78 LGHGLIGVDVDAYDDKPGAETFKVLQERLGDLPPTWRSSSRDDGISGIYLFRC-RPGRRR 136
Query: 116 KKTTESTQGHLDILGCGQYFV--AYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYL 173
G ++ + G +V A ++HP + ++Y W +P ++ P E++ +L
Sbjct: 137 GSPAPEDGGGIEFVQYGHRYVICAPSLHP-SGRQYVWFSPDGEALEDEAP--DPEELPWL 193
Query: 174 FKFFQ 178
+ +
Sbjct: 194 PEAWD 198
>gi|218295952|ref|ZP_03496732.1| Bifunctional DNA primase/polymerase [Thermus aquaticus Y51MC23]
gi|218243690|gb|EED10218.1| Bifunctional DNA primase/polymerase [Thermus aquaticus Y51MC23]
Length = 298
Score = 69.8 bits (169), Expect = 2e-09, Method: Composition-based stats.
Identities = 40/168 (23%), Positives = 57/168 (33%), Gaps = 18/168 (10%)
Query: 8 EQAKQAIHNGFKLIPLRLGDKRP-------QRLGKWEEQLLSSEKIDKLPACGFGFVCGV 60
E A G+ + PL G+KRP E+ ++ P CG G +
Sbjct: 12 EAAVAYARLGYAVFPLTPGEKRPHGRLVPHGLKEASREEATITKWWRSCPGCGVGIL--- 68
Query: 61 GEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120
+ + D D D K + L P R PK + + T
Sbjct: 69 APEEVLVLDFD--DPTAWERLKGEYPTLGDAPRQR---TPKGGYHVFLRLPQRVRLSATV 123
Query: 121 STQGHLDILGCGQ-YFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSE 167
+D+ G G+ Y VA + YTW P K ED PL+ E
Sbjct: 124 RKLAGVDLRGMGKAYVVASPTRLADGRGYTWEVP--LVKPEDLPLIPE 169
>gi|160942659|ref|ZP_02089903.1| hypothetical protein FAEPRAM212_00132 [Faecalibacterium prausnitzii
M21/2]
gi|158446074|gb|EDP23077.1| hypothetical protein FAEPRAM212_00132 [Faecalibacterium prausnitzii
M21/2]
Length = 169
Score = 69.8 bits (169), Expect = 2e-09, Method: Composition-based stats.
Identities = 18/110 (16%), Positives = 39/110 (35%), Gaps = 6/110 (5%)
Query: 640 DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWI-- 697
D F + ++ W L+G+ ++ I E ++ E +D ++
Sbjct: 2 DNPFLIEELSEERPGILLWMLEGLHRLLANRYQFTISERSIQNLEAAMADSDNLTQFMQA 61
Query: 698 DDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTL-NLKQKG 746
+ E S L ++Y+++ E L + + + LK G
Sbjct: 62 SAYVRFKPDTEERSTYLYRAYTKWCEDNLES---PVPQKKFSQFLLKNAG 108
>gi|227543846|ref|ZP_03973895.1| conserved hypothetical protein [Lactobacillus reuteri CF48-3A]
gi|300909098|ref|ZP_07126561.1| lantibiotic protection ABC superfamily ATP binding cassette
transporter [Lactobacillus reuteri SD2112]
gi|227186174|gb|EEI66245.1| conserved hypothetical protein [Lactobacillus reuteri CF48-3A]
gi|300894505|gb|EFK87863.1| lantibiotic protection ABC superfamily ATP binding cassette
transporter [Lactobacillus reuteri SD2112]
Length = 983
Score = 69.4 bits (168), Expect = 2e-09, Method: Composition-based stats.
Identities = 58/360 (16%), Positives = 116/360 (32%), Gaps = 56/360 (15%)
Query: 439 ETGQKVKPTKELY-ITKSTGTPFVE----GEPSQEFLDLVSGYFESEEVMDYFTRCVGMA 493
+ G + + I+ + ++ +S ++ +G+
Sbjct: 569 KNGNIKIDSPFKHKISHHVNVNYNPSIVNDPAYEQLNSFLSHLAPNQTKQ--LKAMLGLI 626
Query: 494 LLGGNKAQR----FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549
L G + F ++GV G+GKSTL L+K F ++ +E++ I +
Sbjct: 627 PLQGTDIMKEIRTFFILKGVSGAGKSTLAQLLKGIFDDEN--QSESNIISSAQNVNKALL 684
Query: 550 NPSLIRL----MGSRIVIISETNENDEINA------AKIKQMTGGDCMTARLNYGNTYSE 599
+ + L G ++ + N + N I G T Y ++
Sbjct: 685 DEHYVDLNDTKKGKIMLWFDDFQSNSKTNIITANAGTVINGAITGVTQTGAAKYEKEHAV 744
Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLET-KYTLEAKKW 658
S I N + + R VI D P RD S K +T +
Sbjct: 745 KLPS-LIVIATNSMPQI--TQEGTAARMFVI--DSPSILRDRSIKAKGKTISISDFVNNS 799
Query: 659 FLKGVKAYISKGLDVDIPEVCLKAKEEERQG---------------TDTYQAWID--DCC 701
+K Y L + LK E++R +D++ +++ +
Sbjct: 800 KVKEALFY----LIMQEASKILKMNEKQRANLFDRNHSAATNLSRLSDSFLTFLEKNEIT 855
Query: 702 DIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWK 761
+ + ++ L + Y + + +S R+ T L+ G + K + K
Sbjct: 856 APYDFIGMQTIKLFEVYKQ------QSNSYNVSYRSFTNQLEMLGLVLKRKNFGGKTYQK 909
>gi|285017019|ref|YP_003374730.1| hypothetical protein XALc_0198 [Xanthomonas albilineans GPE PC73]
gi|283472237|emb|CBA14743.1| hypothetical protein XALc_0198 [Xanthomonas albilineans]
Length = 822
Score = 68.6 bits (166), Expect = 4e-09, Method: Composition-based stats.
Identities = 46/299 (15%), Positives = 93/299 (31%), Gaps = 40/299 (13%)
Query: 462 EGEPSQEFLDLVSGYFESE----EVMDYFTRCVGMALL-GGNKAQRFIHIRGVGGSGKST 516
+ +DL+ E E+ D+ R + G K + + + G G+GK+
Sbjct: 473 QPGKCDRIIDLLHYLCSEERNSRELFDWVLRWCAYPIQHPGAKMKSCVVVHGAQGAGKNL 532
Query: 517 LMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISE-TNENDEINA 575
I +G QY + + ++ A + +I E +
Sbjct: 533 FFEAIMAIYG-QYGSILDQNALVDKHNDWASR----------KLFLIADEVVAQAHRFEQ 581
Query: 576 -AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK 634
+K + G + + Y E F+ K V DD RR+ VI +
Sbjct: 582 KNLLKVLVTGTRIRINPKHIAAYDEVNHCNLVFLSNEKMPVVLEKDD---RRHCVI-WTP 637
Query: 635 PIANRDASFAQKLETKYTLEAKKWFLKGVKAYISK----GLDVDIPEVCLKAKEEERQ-G 689
I + + Q + + + Y+ + + +AK +
Sbjct: 638 SIKEEE--YYQAIRDELGNGGL----EAFHDYLLNVDLGNFNPGTRPLMTEAKSDLIDLA 691
Query: 690 TDTYQAWID----DCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQ 744
D+ +ID + + + + Y + +N K S + +LK+
Sbjct: 692 KDSPLDFIDALTSWNMPPMKPMPGLTEDWYQVYQRWC---VNTGTKPASLKRFIHSLKK 747
>gi|194430133|ref|ZP_03062636.1| replication protein [Escherichia coli B171]
gi|194411843|gb|EDX28162.1| replication protein [Escherichia coli B171]
gi|323159199|gb|EFZ45189.1| virulence-associated protein E family protein [Escherichia coli
E128010]
Length = 642
Score = 68.2 bits (165), Expect = 5e-09, Method: Composition-based stats.
Identities = 89/594 (14%), Positives = 170/594 (28%), Gaps = 97/594 (16%)
Query: 63 QPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKP--KILIPFRMNKEGIKKKKTTE 120
A D DS+DE + T L G R + K L ++ + K+
Sbjct: 5 HGWLALDCDSEDEDIQADIRKTLVQLLGELPPRRWRANSNKCLYLLAVDGDFCKRIHRLA 64
Query: 121 STQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEI 180
G +++L GQ FVA H + W ++ P ++ E +E L++ E
Sbjct: 65 GDMGIIELLANGQQFVACGTH-SSGARIEWDGGL----PDEPPAITGEQLETLWQRLAEQ 119
Query: 181 TVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSH-DEWIPVVMAVHHE 239
V + + + + +L G +G++ + +I H
Sbjct: 120 LPVSVTTEAGNTKMRDRSAFTP--GATDDTAEYLDANGWTLLDGANGERYIRCPFEDGHS 177
Query: 240 TRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIP 299
+ G + + +++ +F + + GD F
Sbjct: 178 SGGDPTSTAY---FPAGTAGFEQGHFKCLHASCAHRDDGDFLNAIGIRNDDFEDLTSTEV 234
Query: 300 KGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFL 359
L L + W I + + A +
Sbjct: 235 AEPLP--------------------LPAFERDKW-------GRIEATISNAAKAVVRPDF 267
Query: 360 VSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNV--EENSKAKSTAQSLEAGSIFSI 417
V + +E + S R + + DY R + E+ + + + +
Sbjct: 268 VDIDIRFDQFRDEIMFASAGSGQWRAFTDADYARLRITMEKRGFKPVGRELIRDVVLLAA 327
Query: 418 TSDLLDSSSRFLGEQDGILDLETGQKVKPTKE---LYITK--STGTPFVEGEPSQEFLDL 472
DS+ +L G + Y T + TP+ + L
Sbjct: 328 DEQPFDSAITWLN----------GLEWDGVPRIECFYHTHFGTADTPYTRAVSMYMWTAL 377
Query: 473 VSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532
G L G KA + G G GKS+ + + +
Sbjct: 378 -----------------AGRVLEPGIKADMVPILVGPQGCGKSSGVEAL----------S 410
Query: 533 AEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR-- 590
+ + + E L R M R+V +E E +N +++ + T
Sbjct: 411 PDPAFFTEISFAEKDD---DLARKMRGRLV--AEIGELRGLNTKELESIKAFVTRTHENW 465
Query: 591 -LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVI---PFDKPIANRD 640
Y ++ P N+ F+ + RR++ + D RD
Sbjct: 466 IPKYREFATQFPRRLVFVGTTNEDEFLADKTGN--RRWLPVEVSKVDVKAIKRD 517
>gi|183984415|ref|YP_001852706.1| hypothetical protein MMAR_4444 [Mycobacterium marinum M]
gi|183177741|gb|ACC42851.1| hypothetical protein MMAR_4444 [Mycobacterium marinum M]
Length = 400
Score = 67.8 bits (164), Expect = 6e-09, Method: Composition-based stats.
Identities = 45/340 (13%), Positives = 87/340 (25%), Gaps = 39/340 (11%)
Query: 1 MPVMQWKEQAKQAIHNGFKLIPLRLGDKRPQRL--GKWEEQLLSSEK-----IDKLPACG 53
+ + + A+ G +IP++ G K P W + + + P G
Sbjct: 12 VSGLSNADAAETYAKAGLHVIPVKPGTKNPGSYLGRGWPARATDDLEVVREWWRRWPDAG 71
Query: 54 FGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKE-- 111
G L D+D E ++ E + +R+ +
Sbjct: 72 IAVHVGGC--GLVVVDVDVP-ENVPDSLWVLLESAAFRSTTTDADSKRGYYFYRLRRGEL 128
Query: 112 ---GIKKKKTTESTQGHLDILGCGQYFVAYNI-HPKTKKEYTWTTPPHRFKVEDTPLLSE 167
G+ + K + + ++ G V HP+ Y T P + P
Sbjct: 129 FGCGLGRLKPPKGKRWG-EVKCYGGAVVLGPTEHPREGGRYA--TAPGGT-LSYLP---- 180
Query: 168 EDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHD 227
++ V + K + N + F N
Sbjct: 181 AEIADGLNAPDTDRAEAVTPGELAARVKAFLETNIDNDAPHALAPICRSFDPSPTNRHPT 240
Query: 228 EWIPVVMAVHHETRG----SSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKK 283
W + A+ G + RW+ + ++ D +E +
Sbjct: 241 MWDALCWAMREAKAGRFPARDAAIALRARWT--------DAIGGQYRGGDPDEFDRMLRD 292
Query: 284 RSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGH 323
+L + A RF+D G
Sbjct: 293 AVAVADADGTREELAAR---AHRFTDLATGIAALAGIDGW 329
>gi|307294812|ref|ZP_07574654.1| Bifunctional DNA primase/polymerase [Sphingobium chlorophenolicum
L-1]
gi|306879286|gb|EFN10504.1| Bifunctional DNA primase/polymerase [Sphingobium chlorophenolicum
L-1]
Length = 694
Score = 67.8 bits (164), Expect = 6e-09, Method: Composition-based stats.
Identities = 51/282 (18%), Positives = 97/282 (34%), Gaps = 34/282 (12%)
Query: 432 QDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVG 491
GI D + + + + G+PS F D ++ + ++ + +
Sbjct: 349 PAGIYD------HNGRPYVNSYRPSDVEPLSGDPSP-FEDFLAYLVPDQAEREHLVKYIA 401
Query: 492 MAL-LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKAN 550
+ K Q I ++G G+GK+TL ++ G + ++
Sbjct: 402 WTVRYPARKLQHAILMKGAQGTGKTTLSHIWAKLVGEWNFRPTTSEEMNSGWH------- 454
Query: 551 PSLIRLMGSRIVIISETNENDEINA-AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609
L G +V++ E N + K+K + G ++ G E P
Sbjct: 455 ---YFLEGKILVVLEEMNLGAGLTVYNKLKDLITGPTVSVNKK-GKDIREVPNFTNLVCF 510
Query: 610 PN--KHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLET--KYTLEAKKWFLKGVKA 665
N + + N D RR+ VI D P R+A++ ++ T K + F + V
Sbjct: 511 SNLPNPILIENDD----RRFFVI--DSPAVRREAAYYREFNTWWKENIGVVMSFFQSVDL 564
Query: 666 YISKGLDVDIPEVCLKAKEEERQGTD-TYQAWIDDCCDIGEN 706
D P +AKE + + + + + GE
Sbjct: 565 ---DDFDPMAPPPVTEAKERLKAASRAPLEQELAHMMEDGEG 603
Score = 67.4 bits (163), Expect = 1e-08, Method: Composition-based stats.
Identities = 35/165 (21%), Positives = 52/165 (31%), Gaps = 18/165 (10%)
Query: 5 QWKEQAKQAIHNGFKLIPLRLGDKRPQRLGKW---EEQLLSSEKIDKLPAC--GFGFVCG 59
W + G IP+ DK+P +W + + S E+I A G G
Sbjct: 10 SWNTRFSDIYRLGLSPIPVLPKDKKPAI--QWKVLQTERASVEQIKVWDASSFNVGIATG 67
Query: 60 VGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTT 119
+ FD D+ + A F ++ V K + G +
Sbjct: 68 RLS-NVIVFDTDNVE---AEQFMANLDL-----PVTAKSKTAKGYHWMFAHPGFAVRNHV 118
Query: 120 ESTQGHLDILGCGQYFVAYN-IHPKTKKEYTWTTPPHRFKVEDTP 163
+ LD+ G G + VA IHP Y W P P
Sbjct: 119 RLEKYKLDVRGDGGFIVAPPSIHPD-GSIYQWVNHPMDVGFAQAP 162
>gi|71065038|ref|YP_263765.1| hypothetical protein Psyc_0468 [Psychrobacter arcticus 273-4]
gi|71038023|gb|AAZ18331.1| hypothetical protein Psyc_0468 [Psychrobacter arcticus 273-4]
Length = 566
Score = 67.8 bits (164), Expect = 7e-09, Method: Composition-based stats.
Identities = 62/427 (14%), Positives = 125/427 (29%), Gaps = 62/427 (14%)
Query: 352 TASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEA 411
+ N + ++ + + + N K W+ T +R+ E +K ++EA
Sbjct: 80 IGKVTNKVYDTEQKIEYTKTQFANEIGNKKLAARWWETKHRKIAKSEVAKDLDVMMAVEA 139
Query: 412 GSIFSI------TSDLLDSSSRF--------LGEQDGI------------------LDLE 439
S+F T ++ D R L + D
Sbjct: 140 QSMFQRYFLIYGTKEVWDDVERIRLPVDTIKLARPNEYEIWLKSEARITIKADNIWFDPT 199
Query: 440 TGQKVKPTKELYITKSTGTPFVEGEP--------SQEFLDLVSGYFES-EEVMDYFTRCV 490
+ K K++ I G P E + DL+ E +EV ++ R +
Sbjct: 200 RTKSPKHDKDIAINTFDGLPLKPIETELSDAAAMCKPITDLLLHLCEGSKEVYEWVLRWL 259
Query: 491 GMALL-GGNKAQRFIHIRGV--GGSGKSTLMN-LIKYAFGNQYVINAEASDIMQNRPPEA 546
+ L G K + G G GKS + ++ +G+ Y + + +
Sbjct: 260 AIPLQQPGTKLDTALIFHGEIQGA-GKSLFFDRVMTRIYGD-YAVTLGQGQLDSSYNDWV 317
Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
L L + + +KQ+ G+ + + + + +
Sbjct: 318 SD---KLYALFEEIF-----SGNDSHSQMGMVKQLITGNTIYISKKFMSGWQQDNFVNAV 369
Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
F+ N +D RR++V + I + T + + F +
Sbjct: 370 FLSNNMKPLSLEQND---RRHVVCYPQQKIPEPILNDVATALTDADAKMLRAFYTLLMLT 426
Query: 667 ISKGLDVDIPEVCLKAKEEE-RQGTDTYQAWIDDCCDIG---ENLWEESHSLAKSYSEYR 722
K P + +K + R ++ + DD S L Y +
Sbjct: 427 DLKDQTAHTPAIITASKNQLIRLSQPNWEVFYDDWVKEEFDIPYCSCLSTDLYFVYRNWC 486
Query: 723 EQELNYD 729
+
Sbjct: 487 HRNGERP 493
>gi|124378239|ref|YP_001029432.1| GfV-D3-ORF2 [Glypta fumiferanae ichnovirus]
gi|124270646|dbj|BAF45567.1| GfV-D3-ORF2 [Glypta fumiferanae ichnovirus]
Length = 323
Score = 67.4 bits (163), Expect = 9e-09, Method: Composition-based stats.
Identities = 30/171 (17%), Positives = 62/171 (36%), Gaps = 8/171 (4%)
Query: 476 YFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVG--GSGKSTLMNLIKYAFGNQYVINA 533
F + D+F + L G + F+ + +GK++L L+K FG+ Y+ N+
Sbjct: 1 MFPEQSERDWFLSFIARFLNGKRADEPFLILIDEHEDRTGKTSLAKLLKAVFGSYYLKNS 60
Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLN- 592
+ +R L L R+++ + D +N IK +TG +
Sbjct: 61 KMVIAGGSRDNNEYAGG--LYGLNEKRLLLADGLQKTDTLNCGFIKAITGDCNYYIKHVN 118
Query: 593 --YGNTYSESPASFTPFIVP-NKHLFVRNPDDAWWRRYIVIPFDKPIANRD 640
+ + + + N D+ + ++ +V P +D
Sbjct: 119 KFFRTEFEFIVQAGLVIVANENNMPIFDKNDENFLKKMVVCPLRSRFVTQD 169
>gi|292491099|ref|YP_003526538.1| hypothetical protein Nhal_0978 [Nitrosococcus halophilus Nc4]
gi|291579694|gb|ADE14151.1| conserved hypothetical protein [Nitrosococcus halophilus Nc4]
Length = 810
Score = 67.4 bits (163), Expect = 9e-09, Method: Composition-based stats.
Identities = 58/344 (16%), Positives = 111/344 (32%), Gaps = 47/344 (13%)
Query: 466 SQEFLDLVSGYFE-----SEEVMDYFTRCVGMALLGGNKAQRF---IHIRGVGGSGKSTL 517
Q L+L+ S+ ++D+ + + + N + + I G G+GK+
Sbjct: 472 CQSLLELLEYMCGRENQNSQALLDWVLKWLAYPI--QNPGAKMRTALVIHGPQGTGKNLF 529
Query: 518 MNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISET-NENDEINA- 575
I +G Y + S + A K +I E ++ +
Sbjct: 530 FECIMQIYGR-YGRIIDQSAVEDKFNDWASK----------KLFLIADEVIARSELFHIK 578
Query: 576 AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP 635
K+K + G+ + Y E F+ + V DD RR+ +I +
Sbjct: 579 NKLKGLITGEWIRINPKNIGAYEERNHVNMVFLSNERMPVVLEEDD---RRHCII-WT-- 632
Query: 636 IANRDASFAQKLETKYTLEAKKWFLKGVKAYISK----GLDVDIPEVCLKAKEEERQ-GT 690
+ + + E + ++ + Y+ G + +AK+E +
Sbjct: 633 ----PEKLPKAVYDEVAAEIRDGGVEALHHYLLNLDLTGFNEHTRPPHTEAKQELIELSM 688
Query: 691 DTYQAWIDDCCD--IGENLW--EESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK- 745
DT + D D G+ S L Y + + R S R L +K
Sbjct: 689 DTCTEFYHDLADGEFGDLHQWPVLSDDLFDLYRSWCSLRGH--RSPASQRRFNDILIRKH 746
Query: 746 GFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDNSNIIDFKR 789
G K+ ++R L + A + D S + + R
Sbjct: 747 GAQKLRKQIMTPAGRSNQRTF--LIFRDAVDKPPDESEAVWYGR 788
>gi|240145190|ref|ZP_04743791.1| conserved hypothetical protein [Roseburia intestinalis L1-82]
gi|257202746|gb|EEV01031.1| conserved hypothetical protein [Roseburia intestinalis L1-82]
Length = 190
Score = 67.4 bits (163), Expect = 9e-09, Method: Composition-based stats.
Identities = 20/102 (19%), Positives = 37/102 (36%), Gaps = 4/102 (3%)
Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE-FLDLV 473
+ ++ + Q+G L + G + E + + +L +
Sbjct: 83 LAAHAESFPPKPDEIHVQNGTLRI-DGSFLAGRSE-IVRSRFPIDYNPQAGKPVVWLRFL 140
Query: 474 SGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKS 515
S E + F +G L+ K QR + ++G GG GKS
Sbjct: 141 SDLLY-PEDIPTFQEYIGYCLIPSTKGQRMMILKGEGGEGKS 181
>gi|124378226|ref|YP_001029423.1| GfV-C20-ORF1 [Glypta fumiferanae ichnovirus]
gi|124270633|dbj|BAF45559.1| GfV-C20-ORF1 [Glypta fumiferanae ichnovirus]
Length = 972
Score = 67.4 bits (163), Expect = 1e-08, Method: Composition-based stats.
Identities = 40/248 (16%), Positives = 87/248 (35%), Gaps = 24/248 (9%)
Query: 419 SDLLDSSSRFLGEQDGILDLETGQKVKP-----TKELYITKSTGTPFVEGEPS---QEFL 470
++ L+S + +D + + P E + G + + +
Sbjct: 588 ANRLNSKLHLFITDNKTIDTSS---IPPIIRHIEIEDLAKTTCGWSYNSELAAKYKEPVQ 644
Query: 471 DLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGV--GGSGKSTLMNLIKYAFGNQ 528
+ F + D+F + L G + F+ + G +GK TL L+K FG+
Sbjct: 645 SYFNTLFPEQSERDWFLSFIARFLNGRRMDEPFLILTDEHEGKTGKKTLAKLLKAVFGSY 704
Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588
Y+ N ++ + E + L R+++ + D +N IK +TG
Sbjct: 705 YLSN--STIVRAGGTRENNEFAGGLYGFNEKRLLLADGLQKTDTLNCGFIKAITGDCNYY 762
Query: 589 ARLNYGNTYSESPASFT----PFIVPN--KHLFVRNPDDAWWRRYIVIPFDKPIANRDAS 642
+ + N + + F ++ N D+ + ++ +V P ++
Sbjct: 763 --MKHINKFFRTQFEFVVQAGLVVIANEKNMPKFDKTDENFLKKMVVCPLRSRFVTQE-E 819
Query: 643 FAQKLETK 650
F + +K
Sbjct: 820 FQEMRRSK 827
>gi|124378237|ref|YP_001029430.1| GfV-D2-ORF1 [Glypta fumiferanae ichnovirus]
gi|124270644|dbj|BAF45566.1| GfV-D2-ORF1 [Glypta fumiferanae ichnovirus]
Length = 694
Score = 67.1 bits (162), Expect = 1e-08, Method: Composition-based stats.
Identities = 62/344 (18%), Positives = 110/344 (31%), Gaps = 55/344 (15%)
Query: 313 KAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEE 372
+A+F ++ Y +Y D SLT D+ I L S +
Sbjct: 376 RALFDVFPNLSIYYRYSHNTFYYCDAKTNIWDSLTNDEFYHHIQQTLKSRIQLTEAELIN 435
Query: 373 PEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQ 432
+ K + +E+ K LDS S
Sbjct: 436 VTTKDTIVKIIDIIM------RKIEDVDFTK-----------------QLDSLSHIFVTD 472
Query: 433 DGILDLETGQKVKPTK----ELYITKSTGTPFVEGEPSQEFLDLVSGYF------ESEEV 482
+ +D+ + E I ++ G + + S ++ V YF E++
Sbjct: 473 NKAIDMS--IFPPVMRSIRCEDLIKRTNGWTYDP-DLSHKYKKSVQSYFNKLLPKPCEQI 529
Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGV--GGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540
+F + L G + + + G SGKSTL L+ FGN Y+ ++ + +
Sbjct: 530 --WFLSFIARMLNGKRSQEPCVILTDKRRGKSGKSTLTYLLHAVFGNYYLNDSIIESLGK 587
Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600
+ L R+ + + ++ + IK + D +TA NT+S
Sbjct: 588 SN-------------LENKRLFVADGSKKDKTLTGDFIKSIINSDYVTAEDTNCNTHSIF 634
Query: 601 PASFTPFIVPNKH--LFVRNPDDAWWRRYIVIPFDKPIANRDAS 642
P IV KH L D R + P ++ +
Sbjct: 635 PIQAGLIIVSPKHDVLICDTNDKDLLNRIVTCPMRSRFVSKKKN 678
>gi|158522714|ref|YP_001530584.1| bifunctional DNA primase/polymerase [Desulfococcus oleovorans Hxd3]
gi|158511540|gb|ABW68507.1| Bifunctional DNA primase/polymerase [Desulfococcus oleovorans Hxd3]
Length = 746
Score = 67.1 bits (162), Expect = 1e-08, Method: Composition-based stats.
Identities = 115/759 (15%), Positives = 208/759 (27%), Gaps = 142/759 (18%)
Query: 5 QWKEQAKQAIHNGFKLIPLRL---------------GDKRP---------QRLGKWEEQL 40
+W+ KQ G+ + PL K P Q
Sbjct: 6 KWQ-AVKQYYKKGWPIFPLHTIKDGKCSCDKPTCTTPGKHPMYDAEDLTEGFKNASSSQQ 64
Query: 41 LSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKD-EKTANTFKDTFEILHGTPIVRIGQK 99
+ + P G G ++ A DID D + T+ L T + G
Sbjct: 65 QLKKWWSRWPDANIGIRTG--KESFIAIDIDLPDGPDNMKKLEKTYGNLPKTVNQKTGGG 122
Query: 100 PKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKV 159
L K + G++DI G G Y VA K+Y W P ++
Sbjct: 123 GYQLFF----KPPHTRIPCKTGLLGNIDIRGEGGYVVAPPSDHIKNKKYKWRHSPDSIEI 178
Query: 160 EDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGE 219
P ++ ++ K + K R T EI L G
Sbjct: 179 AGMP-----------EWLTDLIEKGEKYCDLVHSLKKIPEGK-RNDTLAEIAGSLRGEGR 226
Query: 220 EFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGD 279
E DE +H R ++K + DE ++I +
Sbjct: 227 EL-----DE-------IHGVLRKANKNR------CTPALEDDE-----------VKKIAE 257
Query: 280 TAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKN 339
+ S + K +NK + + ++K L ++ +Y
Sbjct: 258 SISSYPPNASTSDNKNKNAKTA--------QFNKFIETFFEKNEILQDTNSGFFYAIING 309
Query: 340 NVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPED----NNKNSKSPRFWFNTDYRRQN 395
LD + + S D +D + +
Sbjct: 310 EGG--EQVLDTRSDNFKRHCRSSIRKSSDALISRQDIDLIIDHLEANAVDQNKKGEVSIR 367
Query: 396 VEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKS 455
+ + E + ITS+ + ET + +
Sbjct: 368 IARVDNTIYLDLADEKKQVVKITSEGW------------TICQET-PVHFYRPQGML--P 412
Query: 456 TGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQ---RFIHIRGVGGS 512
P VEG+ + + + + L+G Q + + G GS
Sbjct: 413 LPVP-VEGKGFAKLKHFLPAGKQHKHTCRLILAW----LVGALNPQGPYVALILTGPKGS 467
Query: 513 GKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE-ND 571
KSTL +K+ + A +G +I + +V + +
Sbjct: 468 SKSTLTEFLKFLI-DPAKATTRAL---------SGNEETLMIYCKNNWLVSFDNLSVLSQ 517
Query: 572 EINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIP 631
++ A + TGG ++ R Y + + P I+ + F++ D R ++I
Sbjct: 518 PMSDALCRVSTGGG-LSKRKQYTDDEEYVFQANRPIIMNGINNFIKADD--LVDRSLII- 573
Query: 632 FDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTD 691
+ P + +K + EA+ L + A + E D
Sbjct: 574 -ELPFIDDAKRLTKKRLNQEFQEAQPLILGSLLK------------AVSSALKNENIKID 620
Query: 692 T----YQAWIDDCCDIGENLWEESHSLAKSYSEYREQEL 726
+ C E L + Y+ + + L
Sbjct: 621 VPLPRMSDFASWVCAAEEALPWKGKKFLTDYNTHLNKNL 659
>gi|11467844|ref|NP_050895.1| hypothetical protein NeolCp090 [Nephroselmis olivacea]
gi|11467901|ref|NP_050952.1| hypothetical protein NeolCp147 [Nephroselmis olivacea]
gi|5880773|gb|AAD54866.1|AF137379_89 unknown [Nephroselmis olivacea]
gi|5880830|gb|AAD54923.1|AF137379_146 unknown [Nephroselmis olivacea]
Length = 389
Score = 66.7 bits (161), Expect = 1e-08, Method: Composition-based stats.
Identities = 32/200 (16%), Positives = 61/200 (30%), Gaps = 20/200 (10%)
Query: 442 QKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-----ESEEVMDYFTRCVGMALLG 496
Q + P+ + D ++ L
Sbjct: 180 QTIDPSSDHNFMYQVPLRLGPLNQLPPLTDRFKEALIRLVGPDPADLNRLRLFFHHCLTY 239
Query: 497 GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRL 556
+ + G G+GKSTL ++ G +++ A L
Sbjct: 240 QPGSNIAFLLSGDQGTGKSTLEKIVTKLLGEDRCHAMRLAELHNESARTA---------L 290
Query: 557 MGSRIVIISETNENDEINAA--KIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKH- 613
+R++ ++E E + A +K +TG D ++ ++ Y + + ++ NK
Sbjct: 291 RNARVLFVNEVYELETGTPAFEILKTLTGRDLVSNKVLYVGFFKFT-FRGVVVLLSNKPE 349
Query: 614 --LFVRNPDDAWWRRYIVIP 631
L D A R I IP
Sbjct: 350 KDLGSGFADFAMRDRVIEIP 369
>gi|320450734|ref|YP_004202830.1| bifunctional DNA primase/polymerase, N- family [Thermus scotoductus
SA-01]
gi|320150903|gb|ADW22281.1| bifunctional DNA primase/polymerase, N- family [Thermus scotoductus
SA-01]
Length = 300
Score = 66.7 bits (161), Expect = 1e-08, Method: Composition-based stats.
Identities = 35/218 (16%), Positives = 70/218 (32%), Gaps = 28/218 (12%)
Query: 11 KQAIHNGFKLIPLRLGDKRP-------QRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQ 63
++ + G+ ++PL G+KRP ++ P G G + +
Sbjct: 16 QRYVRLGYAVLPLVPGEKRPHFRLVPHGLKEASQDPATLEAWWRSCPEAGVGIL---APE 72
Query: 64 PLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIP-FRMNKEGIKKKKTTEST 122
+ D+D + + F L P + PK + F EG+K + +
Sbjct: 73 GVLVLDVD--QGEAWEALRRDFPALEAAPR---QKTPKGGVHLFLRLPEGVKLSASVRAI 127
Query: 123 QGHLDILGCGQ-YFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEIT 181
G +D+ G G+ Y VA K + Y W + PL+ E + +
Sbjct: 128 PG-VDLRGMGRAYVVAAPTRLKDGRTYAW----------EVPLVRPEALPPVPDALLARL 176
Query: 182 VPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGE 219
+P + + + + ++
Sbjct: 177 LPPPPPPREVWTPVEGASPKRLRALLEAYADRVAATPP 214
>gi|291335967|gb|ADD95559.1| hypothetical protein [uncultured phage MedDCM-OCT-S09-C37]
Length = 288
Score = 66.7 bits (161), Expect = 2e-08, Method: Composition-based stats.
Identities = 36/235 (15%), Positives = 74/235 (31%), Gaps = 23/235 (9%)
Query: 53 GFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEG 112
G G+ + D+D K E L G P+V ++ FR+ ++
Sbjct: 68 AVGIFTGIRGNGIVFLDVD---RNLKRCMKQWGESLAGAPMVTSTKQNAAKFLFRVPEKL 124
Query: 113 IKKKKTTESTQGHLDIL-GCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVE 171
K+ K + +IL + V + +P + P +K E +
Sbjct: 125 WKEVKGRGLGKQDYEILWNSKKQGVIFGAYPGGD-----NSEPGEYKFEG----DLNSIP 175
Query: 172 YLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIP 231
+ + K I +++ ++ + +I GS D W+
Sbjct: 176 VAPDWL--LAEMREPPKTIIKRDLDFSDRSDDEI--FQIVKDCLDVIPNKGKGSRDHWVK 231
Query: 232 VVMAVHHETRGSSKGKEIARRWSKQGSTYDEE-----NFNYKWDTFDFEEIGDTA 281
+ MA++ + G + WS ++EE + W + +
Sbjct: 232 IGMAINSALP-TEAGMMLWSSWSSDDPDFEEEWKEDNPCEHIWHSLRGMALAWER 285
>gi|315122492|ref|YP_004062981.1| P4 family phage/plasmid primase [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495894|gb|ADR52493.1| P4 family phage/plasmid primase [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 75
Score = 66.7 bits (161), Expect = 2e-08, Method: Composition-based stats.
Identities = 44/60 (73%), Positives = 48/60 (80%)
Query: 702 DIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWK 761
+GE EES LAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGG + EK + +
Sbjct: 5 RVGEGFLEESSILAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGREWEKSNSDRR 64
>gi|289704576|ref|ZP_06501009.1| bifunctional DNA primase/polymerase [Micrococcus luteus SK58]
gi|289558696|gb|EFD51954.1| bifunctional DNA primase/polymerase [Micrococcus luteus SK58]
Length = 686
Score = 65.9 bits (159), Expect = 3e-08, Method: Composition-based stats.
Identities = 40/227 (17%), Positives = 67/227 (29%), Gaps = 30/227 (13%)
Query: 8 EQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLP------ACGFGFVCGVG 61
+ A+Q G +IP+R + L W+ ++ +D G CG
Sbjct: 7 DTARQMHAAGVNVIPVRHDGTKAPALKAWQSHRTTAADLDAWFGGDDPRHRAIGAACGAL 66
Query: 62 EQPLYAFDI---------DSKDEKTANTFKDTFEILHGTPIVRIGQKPKIL--IPFR--- 107
L +I D A + +E ++G R P +R
Sbjct: 67 SGGLEMLEIEGAHVGLLEDVGRAAGAAGLLELWERVNGGWCER---SPSGGVHWFYRVEG 123
Query: 108 MNKEGIKKKKTTESTQGHLDILGCGQYFV---AYNIHPKTKKEYTWTTPPHRFKVEDTPL 164
M+ G K TE+ Q + G G V + KT + W P
Sbjct: 124 MDVPGNVKLAATEARQTIAETRGQGGQVVLAPSGGTTHKTGR--AWER--LDGGPATVPT 179
Query: 165 LSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREIT 211
L+ + E L F+ + + + S + R
Sbjct: 180 LTAAERETLHGLFRALDRAPARTVEHRPASTLAPADGARPGDLYAAR 226
>gi|213163899|ref|YP_002321451.1| putative primase [Stenotrophomonas phage S1]
gi|212295210|gb|ACJ24725.1| gp1 [Stenotrophomonas phage S1]
Length = 804
Score = 65.5 bits (158), Expect = 4e-08, Method: Composition-based stats.
Identities = 53/306 (17%), Positives = 99/306 (32%), Gaps = 35/306 (11%)
Query: 466 SQEFLDLVSGYFESEE----VMDYFTRCVGMALL-GGNKAQRFIHIRGVGGSGKSTLMNL 520
L L+ +E + D+ + + L G K + I I G G+GK+ +
Sbjct: 471 CDRLLQLLWHMCGNEANQKALYDWVVKWLAYPLQHPGAKMKSTIVIHGPQGTGKNMFFDE 530
Query: 521 IKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQ 580
+G +Y + + + A + L + +R T N K+K
Sbjct: 531 YMKLYG-EYGRVLDQAALEDKFNDWASRKLFLLADEVVAR------TEVYHLKN--KLKA 581
Query: 581 MTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD 640
+ GD + Y E + F+ V DD RR+ VI +
Sbjct: 582 LITGDRIRINPKNIQAYEEDNHANLVFLSNEAMPVVLEEDD---RRHAVI-WT------P 631
Query: 641 ASFAQKLETKYTLEAKKWFLKGVKAYISK----GLDVDIPEVCLKAKEEERQ-GTDTYQA 695
+Q+ ++ + + + Y+ + G +AKEE D+ Q
Sbjct: 632 DKLSQEFYSEVLSDIRNGATAALHHYLLQVDLTGFTNGTNPPMTQAKEELIGLSQDSPQR 691
Query: 696 WIDD-CCDIGENLWEE---SHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGI 751
++D+ D L S + Y + +E + + L +K I
Sbjct: 692 FLDELYGDDIPGLKPMPALSKEWYEVYKAWCAREGM--PRPAPSPKFINALVRKRQILHP 749
Query: 752 KREKIE 757
R +
Sbjct: 750 DRARKR 755
>gi|302343152|ref|YP_003807681.1| Bifunctional DNA primase/polymerase [Desulfarculus baarsii DSM
2075]
gi|301639765|gb|ADK85087.1| Bifunctional DNA primase/polymerase [Desulfarculus baarsii DSM
2075]
Length = 624
Score = 65.1 bits (157), Expect = 4e-08, Method: Composition-based stats.
Identities = 36/206 (17%), Positives = 69/206 (33%), Gaps = 20/206 (9%)
Query: 8 EQAKQAIHNGFKLIPLRLGDKRPQR-LGKWEEQLLSSEKIDKL---PACGFGFVCGVGEQ 63
E A++ G+ IP+ DKRP R +++ + + ++ P G V G
Sbjct: 3 EAAQRYASLGWAAIPVGA-DKRPLRPWAEYQTRRPEAGELADWFGKPGAMVGVVTGKVSN 61
Query: 64 PLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQ 123
L D + +L + I P+ + ++EG+K
Sbjct: 62 LL------VVDADNSEAISRAEALLPDGLELPIATTPRGRHYYFAHREGMKNAVGVMPA- 114
Query: 124 GHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVP 183
+D+ G Y VA P +E W P + P E+ V K + +
Sbjct: 115 --VDVRAEGGYVVAP---PGPGRE--WLVAPWDCAPPELPAQLEDVVRARAKE-RMLAGV 166
Query: 184 LVKDKKSIIPSKTWTNNNNRQYTNRE 209
V ++ + + ++ +
Sbjct: 167 KVDPGANLPQGERAPCSRYGRHALAD 192
>gi|46198964|ref|YP_004631.1| hypothetical protein TTC0656 [Thermus thermophilus HB27]
gi|46196588|gb|AAS81004.1| hypothetical conserved protein [Thermus thermophilus HB27]
Length = 293
Score = 64.4 bits (155), Expect = 7e-08, Method: Composition-based stats.
Identities = 36/152 (23%), Positives = 52/152 (34%), Gaps = 18/152 (11%)
Query: 8 EQAKQAIHNGFKLIPLRLGDKRPQR-------LGKWEEQLLSSEKIDKLPACGFGFVCGV 60
E A G+ ++PLR G K P + P CG G + G
Sbjct: 5 EHALSYAAQGYGVLPLRPGGKEPLGKLVPHGLKNASRDPATLEAWWRSCPRCGVGILPG- 63
Query: 61 GEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIP-FRMNKEGIKKKKTT 119
+ D D D + + L P R PK F EG++ +
Sbjct: 64 --PEVLVLDFD--DPEAWEGLRQEHPALEAAPRQR---TPKGGRHVFLRLPEGVRLSASV 116
Query: 120 ESTQGHLDILGCGQ-YFVAYNIHPKTKKEYTW 150
+ G +D+ G G+ Y VA K + YTW
Sbjct: 117 RAIPG-VDLRGMGRAYVVAAPTRLKDGRTYTW 147
>gi|323700553|ref|ZP_08112465.1| hypothetical protein DND132_3147 [Desulfovibrio sp. ND132]
gi|323460485|gb|EGB16350.1| hypothetical protein DND132_3147 [Desulfovibrio desulfuricans
ND132]
Length = 497
Score = 64.4 bits (155), Expect = 8e-08, Method: Composition-based stats.
Identities = 44/271 (16%), Positives = 92/271 (33%), Gaps = 27/271 (9%)
Query: 478 ESEEVMDYFTRCVGMALLGGNKAQ--RFIHIRGVGGSGKSTLMN-LIKYAFGNQYVINAE 534
EE+ + L+ + + + G G+GKST+ + K G+ Y
Sbjct: 161 GDEELFGAVMNWMAH-LVQKPWEKPGVALVVTGGRGTGKSTIFECIFKPILGSLYCK--- 216
Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISET-NENDEINAAKIKQMTGGDCMTARLNY 593
+ +R +G N L +V+ E D +K M + M
Sbjct: 217 ----VSHRNHLSGNFN---AHLATKLLVVNEEAFFHGDHEANEVVKSMITEELMEIEPKG 269
Query: 594 GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTL 653
+ + F+ N+H+ + D+ RRY+V+ +D + + L +
Sbjct: 270 VDIREKETFMRVVFLSNNEHVIAASTDE---RRYLVLE-SSSDRAQDQEYFKGLRHEINN 325
Query: 654 EAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAW-IDDCCDIGENL----- 707
+ FL + ++ + P + + +Q W + IG++
Sbjct: 326 GGIEAFLHALMSWKIDMDKLRTPPRTKGLFNQMLHSLNPFQRWTYEKFLHIGDDHPCIKW 385
Query: 708 --WEESHSLAKSYSEYREQELNYDRKRISTR 736
S L Y+++R + D + + +
Sbjct: 386 KTKVSSEDLYLCYNDWRHNLRDCDVRTGANK 416
>gi|310828796|ref|YP_003961153.1| hypothetical protein ELI_3221 [Eubacterium limosum KIST612]
gi|308740530|gb|ADO38190.1| hypothetical protein ELI_3221 [Eubacterium limosum KIST612]
Length = 893
Score = 64.4 bits (155), Expect = 8e-08, Method: Composition-based stats.
Identities = 39/223 (17%), Positives = 70/223 (31%), Gaps = 33/223 (14%)
Query: 6 WKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDK----LPACGFGFVCGVG 61
+ A + GF + P+ K P ++ +I++ P G
Sbjct: 4 FLTSALKFARGGFPVFPVAARGKAPLTENGLKDATTDERQINRWWSKWPDANIAMATG-- 61
Query: 62 EQPLYAFDIDSKDEKTANTF------KDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKK 115
+ DID ++ + + + FE L T +V G I + + +
Sbjct: 62 -HGMVVLDIDVDADRGVDGYDSLRLWESEFEALPETWMVLTGG---GGIHYYFKTDKEIR 117
Query: 116 KKTTESTQGHLDILGCGQY-FVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLF 174
+T +D+ G G Y V +IHP + Y W +KV P+ ED+ L
Sbjct: 118 NRTGVLP--GVDVRGDGGYVIVPPSIHPN-GRAYEWEAVSFDYKV---PVPLPEDLYALM 171
Query: 175 KFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCF 217
V + P N + + +
Sbjct: 172 ----------VNNSTRDHPKFELPERIPEGERNDTLFRYAASL 204
>gi|308176189|ref|YP_003915595.1| bifunctional primase/DNA polymerase protein [Arthrobacter
arilaitensis Re117]
gi|307743652|emb|CBT74624.1| putative bifunctional primase/DNA polymerase protein [Arthrobacter
arilaitensis Re117]
Length = 301
Score = 64.0 bits (154), Expect = 9e-08, Method: Composition-based stats.
Identities = 33/243 (13%), Positives = 68/243 (27%), Gaps = 36/243 (14%)
Query: 8 EQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEK----IDKLPACGFGFVCGVGEQ 63
+ A+ G + P G+KRP + + ++ D+ P+ G
Sbjct: 18 DAARSLASAGVPVFPCVPGEKRPLTRRGFHDAANDLDQVSAWWDRWPSANLAIPTGPASG 77
Query: 64 PLYAFDIDSKDEKTA----NTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTT 119
+ DID + + + +VR P + +++ +
Sbjct: 78 -IDVVDIDIGSTGSGVPAFQRARREGLVHGWAALVR---TPSGGLHVYFPAGTSREQPSW 133
Query: 120 ESTQGHLDILGCGQYFVAYNIHPKTK----KEYTWTTP----PHRFKVEDT-------PL 164
++ H+D G G Y +A + + Y + P P
Sbjct: 134 QAPMAHIDFRGTGGYVLAPPSQVRQPDGHLRPYELQSTGLVEPSPVDASRLRNFLDPRPA 193
Query: 165 LSEE---------DVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLS 215
L+ DV+ L ++ + + NN T + +
Sbjct: 194 LTHRDQMTTRRGLDVQRLGQWVAALGEGERNLGLFWAACRLAENNTAVGDTLAVLGPAAA 253
Query: 216 CFG 218
G
Sbjct: 254 HAG 256
>gi|148256277|ref|YP_001240862.1| hypothetical protein BBta_4941 [Bradyrhizobium sp. BTAi1]
gi|146408450|gb|ABQ36956.1| hypothetical protein BBta_4941 [Bradyrhizobium sp. BTAi1]
Length = 736
Score = 64.0 bits (154), Expect = 9e-08, Method: Composition-based stats.
Identities = 20/112 (17%), Positives = 36/112 (32%), Gaps = 6/112 (5%)
Query: 159 VEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFG 218
V+ TP+ +E + S + N E+ L
Sbjct: 167 VDGTPVRTEIVDGDFADIVLADACSSPAEVGSPQRERGRPLKNTAPADRAEVERALEVIA 226
Query: 219 EEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWD 270
+ + W+ + A+H E +G ++ RWS + YD KW+
Sbjct: 227 SD----DYQVWLRIGAALHDEF--GDEGFDLFDRWSAKSDKYDNREVERKWE 272
>gi|78214078|ref|YP_382857.1| hypothetical protein Syncc9605_2574 [Synechococcus sp. CC9605]
gi|78198537|gb|ABB36302.1| hypothetical protein Syncc9605_2574 [Synechococcus sp. CC9605]
Length = 426
Score = 64.0 bits (154), Expect = 1e-07, Method: Composition-based stats.
Identities = 17/107 (15%), Positives = 32/107 (29%), Gaps = 8/107 (7%)
Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQKVK-PTKELYITKSTGTPFVEGEPSQEFLDLVSG 475
+ + D + +G LDL T +T + + +L +
Sbjct: 321 LQHNDWDGN-HLAAFSNGTLDLSTNILRPGHDPSDRLTFAFPYRWDPKATCPRWLQFIEQ 379
Query: 476 YFESEEVMDYFTRCVGMALLGGNKAQRFIH-----IRGVGGSGKSTL 517
F ++ F +G + + F I G G GK +
Sbjct: 380 TF-DDDTAKVFRAAIGWTIKPKKQDAPFPFEKAFDIAGPKGCGKGVI 425
>gi|301115482|ref|XP_002905470.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262110259|gb|EEY68311.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 243
Score = 64.0 bits (154), Expect = 1e-07, Method: Composition-based stats.
Identities = 44/248 (17%), Positives = 76/248 (30%), Gaps = 62/248 (25%)
Query: 503 FIHIRGVGGSGKSTLMNLIKYAFG---------------NQYVINAEASDIMQNRPPEAG 547
+ + G GGSGKS LMNL+K +G + +D + PE+
Sbjct: 1 MVLLYGEGGSGKSLLMNLLKAIWGLKEYSQKQVLCCDDMDNLAKTLPKADFLSMATPESI 60
Query: 548 KANPSLIRLMGS-RIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
+ G R+VI+ + N +N
Sbjct: 61 S-----CPVKGKQRLVIVLDWNIGAILND------------------------------- 84
Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDASFAQKLETKYTLEAKKWF----L 660
NK ++ RR++V F I + F ++ + L
Sbjct: 85 ----NKLPNYKDESGEVVRRFMVANFMNIIPEERENTIFENDIKDQEFGVFLHRCRSAYL 140
Query: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSE 720
K Y KG++ P ++ + R T+ +I + C E L K+
Sbjct: 141 KFYFKYKIKGVESFCPVSFIENRNLLRMATNYTYQFISEKCTYEEGASISVSQLNKALKA 200
Query: 721 YREQELNY 728
Y ++
Sbjct: 201 YIKERYEM 208
>gi|295696541|ref|YP_003589779.1| Bifunctional DNA primase/polymerase [Bacillus tusciae DSM 2912]
gi|295412143|gb|ADG06635.1| Bifunctional DNA primase/polymerase [Bacillus tusciae DSM 2912]
Length = 269
Score = 63.6 bits (153), Expect = 1e-07, Method: Composition-based stats.
Identities = 36/202 (17%), Positives = 68/202 (33%), Gaps = 25/202 (12%)
Query: 12 QAIHNGFKLIPLRLGDKRP-QRLGKWEEQLLSSEKIDKL----PACGFGFVCGVGEQPLY 66
I IPL KRP + ++ + + E++ + P C + V G +
Sbjct: 20 AYIKRDLSTIPLEPKGKRPLIKWEPFQHRRPTPEQVMRWAQEHPGCNWAIVTGAVSG-VV 78
Query: 67 AFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHL 126
D+DS + A K G P+V+ G+ G + + G +
Sbjct: 79 VLDLDS--PEAAQEIKQRGVEDVG-PVVKTGK----GWHLYFRHPGHPVQNAVKLLPG-V 130
Query: 127 DILGCGQYFVAYN-IHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLV 185
D+ G G Y A +HP + Y W ++E PL ++ +E+
Sbjct: 131 DVRGDGGYVAAPPSVHP-SGAVYRWAKGRSILEIEPPPL---------PEWVEELLNQPQ 180
Query: 186 KDKKSIIPSKTWTNNNNRQYTN 207
+ + ++ +
Sbjct: 181 EPAGGVSIQLEGIGDDIERIAL 202
>gi|260654750|ref|ZP_05860238.1| ATPase, RecA family [Jonquetella anthropi E3_33 E1]
gi|260630465|gb|EEX48659.1| ATPase, RecA family [Jonquetella anthropi E3_33 E1]
Length = 691
Score = 63.2 bits (152), Expect = 2e-07, Method: Composition-based stats.
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 4/58 (6%)
Query: 224 GSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTA 281
S+++WI V MA+ HE G ++ WS+ S Y E KW F+ G
Sbjct: 14 DSYEDWIAVGMALKHE----GLGLDVWDAWSRDSSKYREGECAGKWAGFNETHGGAPV 67
>gi|291569389|dbj|BAI91661.1| hypothetical protein [Arthrospira platensis NIES-39]
Length = 908
Score = 63.2 bits (152), Expect = 2e-07, Method: Composition-based stats.
Identities = 37/156 (23%), Positives = 59/156 (37%), Gaps = 24/156 (15%)
Query: 26 GDKRPQRLGKWEEQLLS----SEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTF 81
G+K P R G +E +S ++I K A G+G G + A D D +
Sbjct: 31 GEKAPYRTGWQKESAISRDVLVDEISKGRAKGYGLRTGKVSGGIVAIDAD------GHKA 84
Query: 82 KDTFEILHGTPIV---RIGQKPKILIPFRMNKEGIKKKKTTESTQGH---------LDIL 129
+ E L G P G++ + + + K T + GH L++
Sbjct: 85 HELAESLGGLPPTVSFTSGKEGRAQYLYLIPDTYWDKITTKKLPTGHKSSDGKEELLELR 144
Query: 130 GCG-QYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPL 164
G Q + + HP+T EY W P+ + PL
Sbjct: 145 WDGCQSVLPPSKHPETG-EYKWLKSPNEIDIAQAPL 179
Score = 44.7 bits (104), Expect = 0.059, Method: Composition-based stats.
Identities = 43/284 (15%), Positives = 92/284 (32%), Gaps = 33/284 (11%)
Query: 503 FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIV 562
+ + G G GKST G+ + + + D + +++ S
Sbjct: 457 LLILHGQQGIGKSTWFRT---MVGDDFFCD-DMGDFKEKDER---------LKMHQSVWT 503
Query: 563 IISETNENDEINA-AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDD 621
+E N + KIK R Y + P + N+ F +
Sbjct: 504 EWAEVENNISRSTSGKIKAFITTQTDNIRPPYAQRSTAYPRANVLVGSTNRTDFNHDETG 563
Query: 622 AWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISK---------GLD 672
A RR++VIP + I + + + E + + +G Y+++ +
Sbjct: 564 A--RRFMVIPVSQVIP---TNLVEDERDQLWGEVVELYRQGRCFYLTREEQQQANLLNKE 618
Query: 673 VDIPEVCLKAKEEERQGTDTY-QAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRK 731
+ E+ DT I D + +++ + E R+ N
Sbjct: 619 FTEHSYLHELIEQFVTDKDTVTTEEIKDYLGKLDGEKIKTNEFNRIEREIRKVMTNLG-- 676
Query: 732 RISTRTVTLNLKQK-GFIGGIKREKIEKEWKSKRIIKGLKLKPA 774
S + N ++ G+I + +++ S + + + + P
Sbjct: 677 -FSQKRFNRNGTKRMGYIKDQPVREADRQTGSGQAAEKVGVHPE 719
>gi|240145191|ref|ZP_04743792.1| putative primase [Roseburia intestinalis L1-82]
gi|257202726|gb|EEV01011.1| putative primase [Roseburia intestinalis L1-82]
Length = 242
Score = 63.2 bits (152), Expect = 2e-07, Method: Composition-based stats.
Identities = 19/193 (9%), Positives = 62/193 (32%), Gaps = 6/193 (3%)
Query: 554 IRLMGSRIVIISETNENDEINAAKIKQM-TGGDCMTARLNYGNTYSESPASFTPFIVPNK 612
L +++ + +K + T M +Y +
Sbjct: 1 ADLEHIHLLVDDDMKMEVLKQTNYVKSIVTAQGKMDLERKSVQSYQGWMYARLLAFSNGD 60
Query: 613 HLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAKKWFLKGVKAYISKG 670
+ + + ++RR +++ + A+R D A+K++ + W +G++ +
Sbjct: 61 LQSLYDRSNGFYRRQLILTTKEKPADRVDDPDIAEKMKLEIE-GIFLWAFEGLQRLAANN 119
Query: 671 LDVDIPEVCLKAKEEERQGTDTYQAWIDD--CCDIGENLWEESHSLAKSYSEYREQELNY 728
L ++ ++ + +++ + ++ S L Y + ++
Sbjct: 120 FRFTESLRTLNNRKYVKRDANNAIDFMESTGYIRLKADMSVTSKELYAIYGIWCDENGLT 179
Query: 729 DRKRISTRTVTLN 741
++ S +
Sbjct: 180 PIRQRSFSDFLMR 192
>gi|254516156|ref|ZP_05128216.1| putative integrase [gamma proteobacterium NOR5-3]
gi|219675878|gb|EED32244.1| putative integrase [gamma proteobacterium NOR5-3]
Length = 489
Score = 62.8 bits (151), Expect = 2e-07, Method: Composition-based stats.
Identities = 49/353 (13%), Positives = 102/353 (28%), Gaps = 49/353 (13%)
Query: 445 KPTKELY-ITKSTGTPFVEGEPSQEFLDLVSGY--FESEEVMDYFTRCVGMALL--GGNK 499
+ Y + K G FL+ V +++ +Y + +A+ G
Sbjct: 143 PASPNYYNLWKDFGVQADPLGSCPLFLNHVESVVCDGNQDCYEYLLNWLALAVQNPGVLP 202
Query: 500 AQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGS 559
+ G G +GK + FGN + + + L +
Sbjct: 203 GVAICLLSGQG-TGKGLFASYAGKLFGNHFKHITDRGQLFGRFTD----------HLDDA 251
Query: 560 RIVIISETN-ENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRN 618
++ E + ++ +K + + ++ YG T +
Sbjct: 252 LLMFADEMHWSGNKEETGLLKVLITEETRSSERKYGATMPVKNCVHLIIASNEGWVVPAE 311
Query: 619 PDDAWWRRYIVIPFDKPIANR---DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDI 675
DD RR+ V+ +A++ D + +L + + L +++ +
Sbjct: 312 LDD---RRFFVLE----VASKRVGDYGYFDQLSAEMDSGGPEALL---HKLLTRDISTFN 361
Query: 676 PE-------------VCLKAKEEERQG-TDTYQAWIDDCCDIGE-NLWEESHSLAKSYSE 720
P+ L E D+ Q +D L +Y
Sbjct: 362 PKDFPRTQARVSQQLASLANIERWLYDLADSTQLSLDTGLIDAPWPAKLPKDQLYAAYCR 421
Query: 721 YREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRI---IKGLK 770
+R + S T L + GF G +K + ++GL+
Sbjct: 422 WRSES-RIAGPVESKAVFTQTLTKFGFTTGKATCPGKKNRVQAYVLPSVEGLR 473
>gi|134296560|ref|YP_001120295.1| TOPRIM domain-containing protein [Burkholderia vietnamiensis G4]
gi|134139717|gb|ABO55460.1| TOPRIM domain protein [Burkholderia vietnamiensis G4]
Length = 797
Score = 62.8 bits (151), Expect = 2e-07, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 28/74 (37%), Gaps = 6/74 (8%)
Query: 204 QYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEE 263
I A LS G D W+ + MA+ E G ++ WS+ S+Y E
Sbjct: 4 YADEERIRAALSHVPA----GDRDTWVQMGMAIKAEL--GEAGFDLWDDWSRSASSYSEA 57
Query: 264 NFNYKWDTFDFEEI 277
+ W +F I
Sbjct: 58 DAKSVWKSFRSGGI 71
>gi|212712327|ref|ZP_03320455.1| hypothetical protein PROVALCAL_03415 [Providencia alcalifaciens DSM
30120]
gi|212685073|gb|EEB44601.1| hypothetical protein PROVALCAL_03415 [Providencia alcalifaciens DSM
30120]
Length = 752
Score = 62.8 bits (151), Expect = 2e-07, Method: Composition-based stats.
Identities = 83/575 (14%), Positives = 173/575 (30%), Gaps = 95/575 (16%)
Query: 206 TNREITAFLSCFGEEFYNGSHDEWIPVV--MAVHHETRGSSKGKEIARRWSKQGSTYDEE 263
T +I + L ++ W+ + +A T K K + WS + DEE
Sbjct: 235 TFDDIRSALWHPQVLRLAENYPTWVDMGNRLAWFKNTDYEDKAKSLWVEWSAKAEKGDEE 294
Query: 264 NFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGH 323
KW + G +L G + P ++ A+ +
Sbjct: 295 AAINKWSQLCADRTG-----YQAIFTLAQKEGWVNPG-------TERLKTAVATADDFDD 342
Query: 324 FLYTADTKAWYKKDKNNVYIWSLTLDKITASIMN-FLVSMKEDVFDLSEEPEDNNKNSKS 382
+ ++ T+D + ++M + ++ +E +
Sbjct: 343 IRVANEPMPLPSFKRDKYGQIEATIDNVAKAVMRPDFIDIEIRFDTFRDEIMFAPTGTNE 402
Query: 383 PRFWFNTDY--RRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSS-SRFLGEQDGILDLE 439
+ + + DY R +E+ + + + + + DS+
Sbjct: 403 WQQFSDADYSRLRIAMEKRDFKPVGRELIRDVVLLAAEENQFDSAIEWLTNL-------- 454
Query: 440 TGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEE------VMDYFT-RCVGM 492
E + + +F +E+ V Y G
Sbjct: 455 ----------------------EWDGIKRVEQFYHTHFGAEDTPYTRAVSLYMWTAMAGR 492
Query: 493 ALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS 552
++ G KA + G G GKS+ ++ + + + E
Sbjct: 493 VMVPGIKADMVPILVGAQGCGKSS----------GVAALSPDPTFFTEISFAEKDD---D 539
Query: 553 LIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR---LNYGNTYSESPASFTPFIV 609
L R M R+V +E E ++ ++ + T + ++ P
Sbjct: 540 LARKMRGRLV--AEIGELRGLSTKDLESIKAFVTRTHENWIPKFKEFATQFPRRSLIIGT 597
Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISK 669
N+ F+ + RR+ +P + N D L+ W + + + +
Sbjct: 598 TNEDEFLADRTGN--RRW--LPVEVIKVNVDDITRDVLQL--------WA-EAREMFKAD 644
Query: 670 GLDVDIPEVCLKAKEEERQGTD----TYQAWIDDCCDIGENLWEESHSLAKSYSEYREQE 725
G+ + E E+ D + W+D+ D+ + S ++ RE
Sbjct: 645 GIQYEAAEHLAAQVHEKYTIKDAWLEIIERWLDEP-DLMTGEKPRTRSFLRAAEVLRE-A 702
Query: 726 LNYDRKRISTRT---VTLNLKQKGFIGGIKREKIE 757
LN D K IS R + L+ G+ +R + +
Sbjct: 703 LNLDPKNISRREQMRIGNVLQNCGYKSVQRRVEGK 737
>gi|218961148|ref|YP_001740923.1| hypothetical protein CLOAM0836 [Candidatus Cloacamonas
acidaminovorans]
gi|167729805|emb|CAO80717.1| hypothetical protein CLOAM0836 [Candidatus Cloacamonas
acidaminovorans]
Length = 343
Score = 62.8 bits (151), Expect = 2e-07, Method: Composition-based stats.
Identities = 49/263 (18%), Positives = 85/263 (32%), Gaps = 23/263 (8%)
Query: 26 GDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTF 85
G K + +W+ LS E I + + G Q L DID +D +
Sbjct: 63 GKKVVSNMPQWKNSSLSVESIKQ-EHNAIAIITGEASQ-LMVIDIDKRDADIYALLAEYG 120
Query: 86 EILHGTPIVRIGQKPKILIPFRMN-------KEGIKKKK-TTESTQGHLDILGCGQYFVA 137
+ P + +N K+ +K TT + +DI G A
Sbjct: 121 LEIDNYCYAL---TPSGGMHIYLNLSHSELWKKRYGRKTLTTTNKNIGIDIRAEGGLIFA 177
Query: 138 YNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTW 197
Y W P + D + + PL +K+I S
Sbjct: 178 PPSIVTNGGFYEWVNMPVNKEDTDYDPNKLIPIMDAIFGYNNNPTPLAPIQKTITKSYFP 237
Query: 198 TNNNNRQYTNREITAFLSCFGEEFYNGS---HDEWIPVVMAVHHETRGSSKGKEIARRWS 254
N + A L NG+ +++WI + +A+ +E +G + ++
Sbjct: 238 FTYYPNIQDNYDQAAQL----IRKLNGTIINYNDWIRMGIALKNEF--GKRGLSLWLLFA 291
Query: 255 KQGSTYD-EENFNYKWDTFDFEE 276
+ D EE KW++F +
Sbjct: 292 DNSAYQDTEEYLIKKWNSFPITD 314
>gi|284050056|ref|ZP_06380266.1| hypothetical protein AplaP_01145 [Arthrospira platensis str.
Paraca]
Length = 706
Score = 62.8 bits (151), Expect = 2e-07, Method: Composition-based stats.
Identities = 37/156 (23%), Positives = 59/156 (37%), Gaps = 24/156 (15%)
Query: 26 GDKRPQRLGKWEEQLLS----SEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTF 81
G+K P R G +E +S ++I K A G+G G + A D D +
Sbjct: 31 GEKAPYRTGWQKESAISRDVLVDEISKGRAKGYGLRTGKVSGGIVAIDAD------GHKA 84
Query: 82 KDTFEILHGTPIV---RIGQKPKILIPFRMNKEGIKKKKTTESTQGH---------LDIL 129
+ E L G P G++ + + + K T + GH L++
Sbjct: 85 HELAESLGGLPPTVSFTSGKEGRAQYLYLIPDTYWDKITTKKLPTGHKSSDGKEELLELR 144
Query: 130 GCG-QYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPL 164
G Q + + HP+T EY W P+ + PL
Sbjct: 145 WDGCQSVLPPSKHPETG-EYKWLKSPNEIDIAQAPL 179
Score = 43.2 bits (100), Expect = 0.17, Method: Composition-based stats.
Identities = 37/266 (13%), Positives = 77/266 (28%), Gaps = 42/266 (15%)
Query: 503 FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIV 562
+ + G G GKST G+ + + + D + +++ S
Sbjct: 457 LLILHGQQGIGKSTWFRT---MVGDDFFCD-DMGDFKEKDER---------LKMHQSVWT 503
Query: 563 IISETNENDEINA-AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDD 621
+E N + KIK R Y + P + N+ F +
Sbjct: 504 EWAEVENNISRSTSGKIKAFITTQTDNIRPPYAQRSTAYPRANVLVGSTNRTDFNHDETG 563
Query: 622 AWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLK 681
A RR++VIP + I + + + E + + +G Y+++ + +
Sbjct: 564 A--RRFMVIPVSQVIP---TNLVEDERDQLWGEVVELYRQGRCFYLTREEQQQANLLNKE 618
Query: 682 AKE-EERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTL 740
E + ++ D + + ++ D ++I T
Sbjct: 619 FTEHSYLHE--LIEQFVTDK------DTVTTEEI-------KDYLGKLDGEKIKTNEFNR 663
Query: 741 N-------LKQKGFIGGIKREKIEKE 759
+ GF K
Sbjct: 664 IEREIRKVMTNLGFSQKRFNRNGTKR 689
>gi|307592387|ref|YP_003899978.1| primase 2 [Cyanothece sp. PCC 7822]
gi|306986032|gb|ADN17912.1| Primase 2 [Cyanothece sp. PCC 7822]
Length = 1087
Score = 62.4 bits (150), Expect = 3e-07, Method: Composition-based stats.
Identities = 61/324 (18%), Positives = 108/324 (33%), Gaps = 40/324 (12%)
Query: 104 IPFRMNKEGIKKKKTT-ESTQGHLDILGC-GQYFVAYNIHPKTKKEYTWTTPPHRFKVED 161
IP +++ G K + E +D+L G+Y Y + K Y P H K +
Sbjct: 229 IPLKVDSTGTKIDGSIIERLHKKVDLLSVIGEYIPLY----ERGKNYVGHCPVHESKAPN 284
Query: 162 TPLLSEEDV---------EYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNR--EI 210
+ ++ + +F F Q + +K+ + + NN + N +
Sbjct: 285 LMVYPDKKMFTCHDCGIGGNIFNFLQLLGKSQLKETITPQSTPQKRLTNNNGHHNFWSNV 344
Query: 211 TAFLSCFGE--EFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYK 268
LS F +D+W+ V MA+H + WS+ S Y K
Sbjct: 345 DWALSYLNALSPFRADDYDDWLTVGMALHSV---DDSLLKEWDNWSRSSSKYKPGECEKK 401
Query: 269 WDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTA 328
W +F G + T L G P R +K + + +F+
Sbjct: 402 WKSF-SSGGGVSL---GTLAHLAKSDGWRSPFEN-NHRVYSNGSKNIAPSSSERNFV--- 453
Query: 329 DTKAWYKKDKNNVYIWSLTLDKITASIM-NFLVSMKEDVFDLSEEPEDNNKNSKSPRFWF 387
D++ V TL ++ I+ +D+ + +N N R
Sbjct: 454 --------DEHTVNQGEPTLAQLIEEILAQNFDDATQDLALVELAKSYDNYNPSEIRAIA 505
Query: 388 NTDY-RRQNVEENSKAKSTAQSLE 410
N R + S+ K+ + LE
Sbjct: 506 NKLIDARHEQDYLSERKAELEQLE 529
>gi|326330159|ref|ZP_08196470.1| putative prophage Lp4 protein 7, DNA replication [Nocardioidaceae
bacterium Broad-1]
gi|325951972|gb|EGD44001.1| putative prophage Lp4 protein 7, DNA replication [Nocardioidaceae
bacterium Broad-1]
Length = 302
Score = 62.4 bits (150), Expect = 3e-07, Method: Composition-based stats.
Identities = 31/213 (14%), Positives = 65/213 (30%), Gaps = 18/213 (8%)
Query: 9 QAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKL----PACGFGFVCGVGEQP 64
A + G + P G K+P ++ + E+++ P G G
Sbjct: 27 AAATLANAGIPVFPCVPGAKQPLTAHGFKSATAAVEQVNDWWSKSPTANIGIPTGAVSG- 85
Query: 65 LYAFDIDS--KDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTEST 122
+ D+D D + L + + + P + + + ++
Sbjct: 86 IAVVDVDVHGADSGFTAFNRAHRAGLVDAWELLV-RTPSGGLHAYFS-PAKAEMRSWSLP 143
Query: 123 QGHLDILGCGQYFVAYN---IHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQE 179
HLD G G Y VA P ++ Y ++ L + + + +
Sbjct: 144 AQHLDFRGDGGYIVAPPSRITTPDGERSY----GLIAVAQHESRPLDADRLRTFLEPVRI 199
Query: 180 ITVPLVKDKKSIIPSK--TWTNNNNRQYTNREI 210
+ P + + P + W N N+ +
Sbjct: 200 VQPPASLTRDGVRPDRLAAWVANRPEGARNQGL 232
>gi|110645270|ref|YP_667909.1| helicase [Neodiprion abietis NPV]
gi|85717846|gb|ABC74935.1| helicase [Neodiprion abietis NPV]
Length = 1136
Score = 62.4 bits (150), Expect = 3e-07, Method: Composition-based stats.
Identities = 28/158 (17%), Positives = 62/158 (39%), Gaps = 16/158 (10%)
Query: 485 YFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP 543
+F G +L + N + + + G +GK++ + ++ + A++ + NR
Sbjct: 830 WFLMMFGASLNIPQNYEKLIVTLTGSSNAGKTSFVQVLGKI-----AVKMPANNFIDNRG 884
Query: 544 PEAGKANPS--LIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESP 601
+ S + +L I+E ++ N I ++ + R + + +
Sbjct: 885 NGPTEMEFSRAICQLYE-----INEVHKTTAENIKNIADLS--KEVVVRHAHSSC-QKIT 936
Query: 602 ASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR 639
+ P I N+ L + N D A R I+I +D +
Sbjct: 937 LQYKPLICNNRMLEIENFDKAVENRLIIIYYDHVFVKK 974
>gi|115352457|ref|YP_774296.1| TOPRIM domain-containing protein [Burkholderia ambifaria AMMD]
gi|115282445|gb|ABI87962.1| TOPRIM domain protein [Burkholderia ambifaria AMMD]
Length = 797
Score = 62.4 bits (150), Expect = 3e-07, Method: Composition-based stats.
Identities = 17/70 (24%), Positives = 26/70 (37%), Gaps = 6/70 (8%)
Query: 208 REITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNY 267
+ A LS + D W+ + MA+ E G + WS+ S Y E +
Sbjct: 8 ERMRAALSHVPAD----DRDTWVQMGMAIKAEF--GEAGFDFWDDWSRSASNYSEADAKS 61
Query: 268 KWDTFDFEEI 277
W +F I
Sbjct: 62 VWKSFRSGGI 71
>gi|85059138|ref|YP_454840.1| hypothetical protein SG1160 [Sodalis glossinidius str. 'morsitans']
gi|84779658|dbj|BAE74435.1| hypothetical protein [Sodalis glossinidius str. 'morsitans']
Length = 214
Score = 62.0 bits (149), Expect = 4e-07, Method: Composition-based stats.
Identities = 32/149 (21%), Positives = 55/149 (36%), Gaps = 18/149 (12%)
Query: 23 LRLGDKRPQRLGKWEEQLLSSEKIDKL--PACGFGFVCGVGEQPLYAFDIDSKDEKTANT 80
L K+ + +W L++ +D P G G G L A D D++DE
Sbjct: 60 LYNRKKQIAGIRQWASMLITPAMLDNWEEPDYGICVRTGRG---LIALDCDNEDEGHHAI 116
Query: 81 FKD-TFEILHGTPIVRIGQKPKILIPFRMNKEGIKKK-----KTTESTQGHLDILGCGQY 134
+ + L P R + + + +N ++K + +++L GQ
Sbjct: 117 IEQVLRDTLGCLPPCRFRKNANKCL-YLLNAPFERRKGVLRLPDEDGRPAQIELLATGQQ 175
Query: 135 FVAYNIHPKTKKEYTWTTPPHRFKVEDTP 163
F+A IHP + W RF + P
Sbjct: 176 FMAAGIHP-SGARIVW-----RFALSKYP 198
>gi|302343670|ref|YP_003808199.1| Bifunctional DNA primase/polymerase [Desulfarculus baarsii DSM
2075]
gi|301640283|gb|ADK85605.1| Bifunctional DNA primase/polymerase [Desulfarculus baarsii DSM
2075]
Length = 626
Score = 62.0 bits (149), Expect = 4e-07, Method: Composition-based stats.
Identities = 36/203 (17%), Positives = 63/203 (31%), Gaps = 21/203 (10%)
Query: 8 EQAKQAIHNGFKLIPLRLGDKRPQR-LGKWEEQLLSSEKIDKL---PACGFGFVCGVGEQ 63
E A++ G+ IP+ DKRP R +++ + + + P G V G
Sbjct: 3 EAAQRYASLGWAAIPVGA-DKRPLRPWAEYQTRRPEAGALADWFGKPGAMVGIVTGKVSN 61
Query: 64 PLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQ 123
L D + +L + I P+ + ++EG+K
Sbjct: 62 LL------VIDADNSEAISRVEALLPDGLEMPIATTPRGRHYYFAHREGMKNAVGVMPA- 114
Query: 124 GHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKF--FQEIT 181
+D+ G Y VA P +E W P + P E+ V K +
Sbjct: 115 --VDVRAEGGYVVAP---PGPGRE--WLVAPWDCAPPELPAQLEDVVRARAKERQIASLK 167
Query: 182 VPLVKDKKSIIPSKTWTNNNNRQ 204
V + + +
Sbjct: 168 QGDVAPDPVRANLREREKGRDSR 190
>gi|332855689|ref|ZP_08435998.1| hypothetical protein HMPREF0021_03588 [Acinetobacter baumannii
6013150]
gi|332870668|ref|ZP_08439386.1| hypothetical protein HMPREF0020_03038 [Acinetobacter baumannii
6013113]
gi|332727315|gb|EGJ58754.1| hypothetical protein HMPREF0021_03588 [Acinetobacter baumannii
6013150]
gi|332732052|gb|EGJ63324.1| hypothetical protein HMPREF0020_03038 [Acinetobacter baumannii
6013113]
Length = 483
Score = 62.0 bits (149), Expect = 4e-07, Method: Composition-based stats.
Identities = 55/336 (16%), Positives = 119/336 (35%), Gaps = 49/336 (14%)
Query: 464 EPSQEFLDLVSGYFESE-EVMDYFTRCVGMAL--LGGNKAQRFIHIRGVGGSGKST-LMN 519
E + + L++ + E E + + + + L +G A + + GSGKS ++
Sbjct: 150 EDCKGIMTLINDLCDGEKEAVLFLLKWLAFPLQNIGAKMATCVLMHGHIHGSGKSLMFVS 209
Query: 520 LIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEIN--AAK 577
++K +G +Y + + + E +N + +
Sbjct: 210 IMKKIYG-EYHTTVGQAQLDNQYNEWIEN----------KLFGVFEEIVDNKKKHNVMGM 258
Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHL-FVRNPDDAWWRRYIVIPFDKPI 636
IK + G+ + + + + + T F+ N + D RR++V+ P
Sbjct: 259 IKHLITGETLYISKKFVSGWEMNNHLNTVFLSNNTQPLPIEEKD----RRFLVL---NPC 311
Query: 637 ANRDASFAQKLETKYTLEAKKWFLKGVKAYISK--GLDVD-------IPEVCLKAKE-EE 686
+ D +++ + GV+A+ + GLD+ P K +
Sbjct: 312 KDLDGPLHERVMQELKT-------NGVQAFYTYLMGLDLTDFHEHVKPPMTIAKRTMIDY 364
Query: 687 -RQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK 745
R G DT+ + + +S L K++ ++ + +IS + + K+
Sbjct: 365 SRAGFDTFYHEWKNGDTKFPYVSCKSEQLYKAFGQWSRTTGEH---QISMKRFIIEGKKH 421
Query: 746 GFI---GGIKREKIEKEWKSKRIIKGLKLKPAFESV 778
G + + ++K II G K K E +
Sbjct: 422 GIVPSDKAKHWKGKRSSGQNKVIIIGEKPKDEQEQL 457
>gi|184200566|ref|YP_001854773.1| hypothetical protein KRH_09200 [Kocuria rhizophila DC2201]
gi|183580796|dbj|BAG29267.1| hypothetical protein [Kocuria rhizophila DC2201]
Length = 301
Score = 62.0 bits (149), Expect = 4e-07, Method: Composition-based stats.
Identities = 34/214 (15%), Positives = 62/214 (28%), Gaps = 32/214 (14%)
Query: 7 KEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLP-ACGFGFVCGVGEQPL 65
++ +GF L+PL G+KRP + + ++D+ P G G CG L
Sbjct: 27 RDHLYALAIHGFHLLPLIPGEKRPAITDWEKRATVDPAQLDRWPKGAGVGIACG--RSGL 84
Query: 66 YAFDIDSK--------DEKTANTFKDTFEILHGTPIVRIG-------QKPKILIPFRMNK 110
D DS D D F L + P +
Sbjct: 85 VVIDCDSHGSTPPPEWDRPGIRDGVDVFADLWSRHSPNVSMFDTFTVTTPSGGLHLYFRA 144
Query: 111 EGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDV 170
+ + + +D+ G Y + K TP +
Sbjct: 145 PVGSRIRNRTGVEWQVDVRAHGGYACGPGTNLKQGTY--------------TPAGDPGKL 190
Query: 171 EYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQ 204
L ++ ++ P ++ +P T + +
Sbjct: 191 LPLPQWLHDMLAPQEPAQRRPMPVAPPTRSQADR 224
>gi|332160965|ref|YP_004297542.1| Replication protein [Yersinia enterocolitica subsp. palearctica
105.5R(r)]
gi|325665195|gb|ADZ41839.1| Replication protein [Yersinia enterocolitica subsp. palearctica
105.5R(r)]
gi|330862121|emb|CBX72285.1| hypothetical protein YEW_AK02220 [Yersinia enterocolitica W22703]
Length = 721
Score = 61.7 bits (148), Expect = 4e-07, Method: Composition-based stats.
Identities = 36/206 (17%), Positives = 68/206 (33%), Gaps = 18/206 (8%)
Query: 26 GDKRPQRLGKWEEQLLSSEKIDKL---PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFK 82
G+++ L W ++ ++ +I+K P G G G + A D DS+ E+ +
Sbjct: 57 GNRQIAGLVNWTKRQINDSEIEKWSREPDYGICMRTGNG---VIALDCDSESEEIQAIIQ 113
Query: 83 DTFEILHGT-PIVRI-GQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNI 140
+ L G P R K L + E K+ E G +++L G V
Sbjct: 114 ELTLELFGVIPPRRYRSNSNKCLYLLAVEGEYRKRIHRLEGNNGIIEMLADGNQAVVAGT 173
Query: 141 HPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNN 200
HP + W ++ +++ E +E L+ E + + + +
Sbjct: 174 HP-SGARILWDNGL----PDEPVVITPEQLESLWSALAERLPVVNSTEAGTSRLRDRS-- 226
Query: 201 NNRQYTNREITAFLSCFGEEFYNGSH 226
Q T +
Sbjct: 227 ---QATPNATDETADFLDANGWTLDF 249
>gi|224178113|ref|YP_002600956.1| putative phage associated DNA primase [Pyramimonas parkeae]
gi|224178119|ref|YP_002600974.1| putative phage associated DNA primase [Pyramimonas parkeae]
gi|215882780|gb|ACJ71153.1| putative phage associated DNA primase [Pyramimonas parkeae]
gi|215882786|gb|ACJ71159.1| putative phage associated DNA primase [Pyramimonas parkeae]
Length = 454
Score = 61.7 bits (148), Expect = 5e-07, Method: Composition-based stats.
Identities = 51/315 (16%), Positives = 112/315 (35%), Gaps = 47/315 (14%)
Query: 482 VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF-GNQYVINAEASDIMQ 540
+ + R + A G Q + G +GKS+++++ K+ G+ + +++
Sbjct: 87 LRTFMNRIIFAAKEGH-FYQTITWLSGRSATGKSSIVSICKFLSEGSYLELGKDSNQFTA 145
Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600
+ L+G ++++I++ ++ ++ + G D ++ N
Sbjct: 146 S-------------ALVGKKLLLITDPSKITPNQIDILRTVAGRDTLSYENKNMNGTYTF 192
Query: 601 PASFTPFIVPNKHLFVRNPDDAWWR----RYIV--IPFDKPIANRDASFAQKLETKYTLE 654
IV N++ R+ D+ W+ R + I + P+ ++F Q LE+ +
Sbjct: 193 VPYCQILIVTNRNP--RDYDN-IWQLEELRTKIIDIEYLHPLPEV-SNFNQYLES-FKDH 247
Query: 655 AKKWFLKGVKAYISKGLDVDIPEVCLKA--KEEERQGT-DTYQAWIDDCCDI-------- 703
W + Y+ L + E ++I+DC I
Sbjct: 248 FHVWATFCPREYL---LQTTRSQAIQNTRSSNEHVSTEISPLHSFIEDCIYICDPAYECN 304
Query: 704 GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG----FIGGIKREKIEKE 759
+ L+ L +Y + E++ S R Q + IK + +
Sbjct: 305 EKELFVTKKDLLIAYENWIEKQGQEASFDGSARKFFQKNIQNALLTTYNIAIKNYRPKVT 364
Query: 760 WKSKR---IIKGLKL 771
K++ KG+KL
Sbjct: 365 EKNEVRPLAWKGIKL 379
>gi|325106784|ref|YP_004267852.1| Bifunctional DNA primase/polymerase [Planctomyces brasiliensis DSM
5305]
gi|324967052|gb|ADY57830.1| Bifunctional DNA primase/polymerase [Planctomyces brasiliensis DSM
5305]
Length = 687
Score = 61.3 bits (147), Expect = 6e-07, Method: Composition-based stats.
Identities = 39/236 (16%), Positives = 75/236 (31%), Gaps = 15/236 (6%)
Query: 4 MQWKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQ 63
M + +A + GF + P G K+P ++ E+I++ G+
Sbjct: 1 MDFLTEAIKYAEAGFPVFPCVPGSKQPLTSDGFKSATTDEEQIEQWWTETPNANIGIATA 60
Query: 64 PLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKE-GIKKKKTTEST 122
L D+D D ++ F L + P+ F + G K +
Sbjct: 61 GLVVVDVDGIDNSWLQGEEELFSQLSLNAVC---MTPRNGTHFWFTQPAGEPVKCSAGKV 117
Query: 123 QGHLDILGCGQYFVAYNIHPKT-----KKEYTWTTPP---HRFKVEDTPLLSEEDVEYLF 174
++DI G G Y V + + K +Y W P R ++ P +
Sbjct: 118 APNVDIRGDGGYVVVPPSYIEDDKKGIKGKYQWVYPQILGMRSELTPAPEWLMRQLNGSP 177
Query: 175 KFF-QEITVPLVKDKKSIIPSKTWTNNNNRQY--TNREITAFLSCFGEEFYNGSHD 227
K ++ + + + R+ + EI + L + + D
Sbjct: 178 KELAKDFGGGNIIPSGQRNTALARIAGSVRRIGCSEHEIRSLLRAVNSQRCDPPID 233
>gi|255067391|ref|ZP_05319246.1| inner membrane protein [Neisseria sicca ATCC 29256]
gi|255048361|gb|EET43825.1| inner membrane protein [Neisseria sicca ATCC 29256]
Length = 1008
Score = 61.3 bits (147), Expect = 6e-07, Method: Composition-based stats.
Identities = 23/89 (25%), Positives = 33/89 (37%), Gaps = 14/89 (15%)
Query: 208 REITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNY 267
EI A LS G + D WI + AV E G + WS+ Y+ +
Sbjct: 10 DEIRAALSHIGAD----DRDMWIRMGAAVKDEM--GEDGFHLWDEWSQTSGNYNARDAKA 63
Query: 268 KWDTFDFEEIGDTAKKRSTFTSLFYHHGK 296
W +F I + +LFYH +
Sbjct: 64 AWKSFKPGHI--------SIATLFYHARQ 84
>gi|291460141|ref|ZP_06599531.1| RecA-family ATPase [Oribacterium sp. oral taxon 078 str. F0262]
gi|291417482|gb|EFE91201.1| RecA-family ATPase [Oribacterium sp. oral taxon 078 str. F0262]
Length = 764
Score = 61.3 bits (147), Expect = 6e-07, Method: Composition-based stats.
Identities = 21/76 (27%), Positives = 30/76 (39%), Gaps = 6/76 (7%)
Query: 206 TNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENF 265
T ++TA L + EWI V MA+ E +S+ +WS+ + Y
Sbjct: 2 TQFDLTALLGYIDPSTL--DYQEWINVGMALKQEGHTASE----WDQWSRADARYKPGEC 55
Query: 266 NYKWDTFDFEEIGDTA 281
KW TF E G
Sbjct: 56 FKKWMTFRNENGGAPV 71
>gi|317501014|ref|ZP_07959222.1| hypothetical protein HMPREF1026_01165 [Lachnospiraceae bacterium
8_1_57FAA]
gi|316897592|gb|EFV19655.1| hypothetical protein HMPREF1026_01165 [Lachnospiraceae bacterium
8_1_57FAA]
Length = 145
Score = 61.3 bits (147), Expect = 6e-07, Method: Composition-based stats.
Identities = 15/119 (12%), Positives = 41/119 (34%), Gaps = 4/119 (3%)
Query: 556 LMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLF 615
+ G + ++ N +K+ G D + + + N+
Sbjct: 1 MYGKLLNACADIPCKAMENTDVLKKAVGEDTLIYEKKGQDAIHFHSYA-KLLFSTNEMPQ 59
Query: 616 -VRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGL 671
+ N DA++RR +++ ++ + +D +K++ + + Y + L
Sbjct: 60 NLENKSDAFYRRLLILDMNRVVKSGEKDLHLKEKVQAESDYAIHMAMIALKNLYEQRRL 118
>gi|330857717|gb|AEC46815.1| primase [Xanthomonas vesicatoria]
Length = 803
Score = 61.3 bits (147), Expect = 7e-07, Method: Composition-based stats.
Identities = 59/305 (19%), Positives = 98/305 (32%), Gaps = 32/305 (10%)
Query: 465 PSQEFLDLVSGYFESEE----VMDYFTRCVGMALL-GGNKAQRFIHIRGVGGSGKSTLMN 519
+ L L+ +E + D+ + + L G K + I I G G+GK+ +
Sbjct: 470 TCDKLLQLLWHMCGNEANQRMLYDWVIKWLAYPLQHPGAKMKSTIVIHGPQGTGKNMFFD 529
Query: 520 LIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIK 579
FG +Y + S + A + L + +R T N K+K
Sbjct: 530 EYMKLFG-EYGRVLDQSALEDKFNDWASRKLFLLADEVVAR------TEVYHLKN--KLK 580
Query: 580 QMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVI--PFDKPIA 637
+ GD + Y E + F+ V DD RR+ VI P DK
Sbjct: 581 ALITGDRIRINPKNIQAYEEDNHANLVFLSNEAMPVVLEEDD---RRHAVIWTP-DKLPG 636
Query: 638 NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQ-GTDTYQAW 696
A ++ T + L+ + G + AK E G D+ Q +
Sbjct: 637 RVLPGGAGEIRAGGTAALHHYLLQVDLGDFTNGTNPP----MTAAKAELINLGQDSPQRF 692
Query: 697 IDDCCDIG-ENLW---EESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIK 752
+D+ L S + Y + +E K + L +K I
Sbjct: 693 LDELYGQDIPGLKPRPAPSKEWYEVYKVWCGREG---VKPAPSPKFINALVRKRGITHPD 749
Query: 753 REKIE 757
R +
Sbjct: 750 RARKR 754
>gi|302382356|ref|YP_003818179.1| hypothetical protein Bresu_1244 [Brevundimonas subvibrioides ATCC
15264]
gi|302192984|gb|ADL00556.1| hypothetical protein Bresu_1244 [Brevundimonas subvibrioides ATCC
15264]
Length = 525
Score = 61.3 bits (147), Expect = 7e-07, Method: Composition-based stats.
Identities = 42/206 (20%), Positives = 77/206 (37%), Gaps = 29/206 (14%)
Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF--ESEEVMDY 485
LG DG L+L G + TK+ G +F + V+ + E+ ++
Sbjct: 126 ALGLPDGALNLFKG---------FTTKTAF-----GGDYSKFKEHVNQNLAGGNVELSEW 171
Query: 486 FTRCVGMALLGGNKAQ-RFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544
+ L K + +RG GSGKST N++ G QY +++ + R
Sbjct: 172 MWDFMADIFLNPTKRPPVMLILRGSKGSGKSTFSNVLARLIGEQYCPVIDSAQGLTGRFA 231
Query: 545 EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604
+ L+ + + D + A++K + + +G + PA F
Sbjct: 232 GQTFSRAMLLVVEEAYFA-------GDLASEARLKSLVTSPRLPVEEKHG-ATTMQPAYF 283
Query: 605 TPFIVPN-KHLFVRNPDDAWWRRYIV 629
+ N +H+ P + RR+ V
Sbjct: 284 RICMTANAEHVVPSGPGE---RRFAV 306
>gi|301116645|ref|XP_002906051.1| conserved hypothetical protein [Phytophthora infestans T30-4]
gi|262109351|gb|EEY67403.1| conserved hypothetical protein [Phytophthora infestans T30-4]
Length = 325
Score = 60.9 bits (146), Expect = 8e-07, Method: Composition-based stats.
Identities = 37/230 (16%), Positives = 76/230 (33%), Gaps = 20/230 (8%)
Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569
GGSGKS L NL+K+AFG + + + L +IV +
Sbjct: 66 GGSGKSLLANLVKFAFGQDQIGLLS----------NSMQEKFGLSEFATKQIVCCDDMPH 115
Query: 570 N---DEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRR 626
N + + MT G ++ + + + I N ++ RR
Sbjct: 116 NIAKTLPRSDFLSMMTRG-SISCPVKGKGSIEVLDWNIPTLINSNHMPNYKDEAGEIVRR 174
Query: 627 YIVIPFDKPIANR--DASFAQKLETKYTLEAKKWF----LKGVKAYISKGLDVDIPEVCL 680
+++ F K + + D QK++ + ++ Y SK + P+ +
Sbjct: 175 LMIVEFGKQVPDDEVDVELEQKIKDQEFATFLHRCRSKYIEFKAKYASKKVTAFAPQSFI 234
Query: 681 KAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDR 730
E R+ + + E + + + +++ D+
Sbjct: 235 DRSNEFRETANNSYGFAMGNVAYEEGAEISRSEMRRHLLVWMQEKFGLDK 284
>gi|211731797|gb|ACJ10118.1| predicted P-loop ATPase [Bacteriophage APSE-3]
Length = 666
Score = 60.9 bits (146), Expect = 8e-07, Method: Composition-based stats.
Identities = 88/569 (15%), Positives = 185/569 (32%), Gaps = 90/569 (15%)
Query: 206 TNREITAFLSCFGEEFYNGSHDEWIPVV--MAVHHETRGSSKGKEIARRWSKQGSTYDEE 263
T ++ + L ++ W+ + +A +TR + K + WS + D E
Sbjct: 141 TFEDLRSALWYPKILNQAENYPSWVDMGNRLAWFKDTRFEDEAKTMWLDWSSAAAKGDIE 200
Query: 264 NFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGH 323
KW + G SL G + P A R A+ ++ +
Sbjct: 201 AAEAKWAELRADRTG-----YQAIFSLAQKAGWVNPG---AERLK----TAVATVDEFDD 248
Query: 324 FLYTADTKAW--YKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSK 381
+ W +K+++ + I + + A + V ++ +E +K
Sbjct: 249 LTDPTENSKWPTFKRNRTSGQIEATIDNAAKAVMCADFVGVEIRFDTFRDEIMFAPVGTK 308
Query: 382 SPRFWFNTDY--RRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSS-SRFLGEQDGILDL 438
+ + + DY R +E+ + + + + + DS+
Sbjct: 309 EWQTFTDADYSRLRITMEKRGFRAVGRELIRDVVLLAAVENPFDSAMEWL---------- 358
Query: 439 ETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEE------VMDYFTRCV-G 491
+E + +F +E+ V Y + G
Sbjct: 359 --------------------KSLEWDGIPRIETFYHTHFGTEDTAYTRAVSRYMWTALAG 398
Query: 492 MALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANP 551
L G KA + G GSGKS+ ++ + + + E
Sbjct: 399 RVLKPGIKADMVPILVGAQGSGKSS----------GVAALSPDPTFFTEISFAEKDD--- 445
Query: 552 SLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARL---NYGNTYSESPASFTPFI 608
L R M R +++E +E +N +++ + T + ++ P
Sbjct: 446 DLARKM--RGCLVAEISELRGLNTKELESIKAFVTRTHEKWIPKFKEFATQFPRRSLSIG 503
Query: 609 VPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLK-GVKAYI 667
N+ F+ + RR++ + + D +K + EA++ F + G++
Sbjct: 504 TTNEDEFLGDKTGN--RRWLPVE----VGKMDVEGIKKDVIQLWAEARELFNETGIQFQE 557
Query: 668 SKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELN 727
++ L + E K+ ++ + W+D+ D+ + +S RE LN
Sbjct: 558 AEQLANQVHEKYFI-KDAWQE---IIERWLDEP-DLMTGRKPRARQFLRSADILRE-ALN 611
Query: 728 YDRKRISTRT---VTLNLKQKGFIGGIKR 753
+ K IS R + L+ F +R
Sbjct: 612 LEPKNISRREQMRMGHVLQNCNFKQVQRR 640
>gi|70606445|ref|YP_255315.1| hypothetical protein Saci_0633 [Sulfolobus acidocaldarius DSM 639]
gi|68567093|gb|AAY80022.1| hypothetical protein Saci_0633 [Sulfolobus acidocaldarius DSM 639]
Length = 533
Score = 60.9 bits (146), Expect = 9e-07, Method: Composition-based stats.
Identities = 37/244 (15%), Positives = 83/244 (34%), Gaps = 28/244 (11%)
Query: 430 GEQDGILDLETGQKVKPTKELYITKSTGTPFVE--GEPSQEFLDLVSGYFESEEVMDYFT 487
++G+ G+ + + ++ T + E G ++ L+ +SGY+ + +D
Sbjct: 216 PFKNGLYC--DGKLINNFRGIW-TYHLPYEYREISGNEVEQLLNKLSGYYPN---IDDVL 269
Query: 488 RCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAG 547
+ + + + + + + G GK L I+ + I + +++ G
Sbjct: 270 NIMALPFINRVQRKV-VILYGPPRGGKDYL---IEKILMSFVKITSLRPEVVT------G 319
Query: 548 KANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFT-P 606
+ L L R V I E A + ++GG M A F P
Sbjct: 320 DSRFELCGLWNFRAVYIGEVEYIGSKLATFLDNLSGGVLMKAECKNKAPIEMV---FKGP 376
Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAK-KWFLKGVKA 665
+ L + + ++ R V+ F + + + + E ++ +A
Sbjct: 377 VYLSANRLIIEDLPSGFYDRAEVVVFKNRF-----NAPKYILDESEKEVLINILIRRAQA 431
Query: 666 YISK 669
K
Sbjct: 432 LSEK 435
>gi|254454539|ref|ZP_05067976.1| Bifunctional DNA primase/polymerase, N-terminal domain family
[Octadecabacter antarcticus 238]
gi|198268945|gb|EDY93215.1| Bifunctional DNA primase/polymerase, N-terminal domain family
[Octadecabacter antarcticus 238]
Length = 219
Score = 60.9 bits (146), Expect = 9e-07, Method: Composition-based stats.
Identities = 50/235 (21%), Positives = 84/235 (35%), Gaps = 25/235 (10%)
Query: 23 LRLGDKRPQRLGKWEEQLLSSEKI-DKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTF 81
+++ PQ G ++ DK P G G + DID KD+K T
Sbjct: 1 MQIRQVAPQEDGLQSRDHRQIDRWWDKHPDALPGLPTGAASG-VAVLDIDRKDDKDGFTA 59
Query: 82 KDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIH 141
+ T + P + T++ +G +D+L G Y +A
Sbjct: 60 LSDAGLDRFTDGRYVVDTPSGGQHIYFAHIDGLRCSTSKIAEG-VDVLADGGYVIAPGAE 118
Query: 142 PKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNN 201
T+ Y P ED + + + K K S P++ W
Sbjct: 119 -TTQGTY-----PTSSNSEDM---TVKPFPKTLRKLVGQRKATTKPKSSE-PAQAWKI-- 166
Query: 202 NRQYTNREITAFLSCFGE--EFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWS 254
+ A L + + S D W+ ++ A+HHE+ GS+KG+++A WS
Sbjct: 167 --------VKAALKSIPNNGKGADVSRDWWVKMLAALHHESSGSAKGRKLAHTWS 213
>gi|254504973|ref|ZP_05117124.1| hypothetical protein SADFL11_5012 [Labrenzia alexandrii DFL-11]
gi|222441044|gb|EEE47723.1| hypothetical protein SADFL11_5012 [Labrenzia alexandrii DFL-11]
Length = 1485
Score = 60.1 bits (144), Expect = 1e-06, Method: Composition-based stats.
Identities = 32/222 (14%), Positives = 65/222 (29%), Gaps = 16/222 (7%)
Query: 6 WKEQAKQAIHNGFKLIPLRLGDKRPQR--LGKWEEQLLS------SEKIDKLPACGFGFV 57
W+ + A +P P L W+ S+ + G +
Sbjct: 28 WQPDEEFAWIARRPGLP-YPECGDPVYRPLDGWQNVTAETAVERLSDNLRNPYPHNIGVL 86
Query: 58 CGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKK 117
L D+D+ + +D L G + ++G K + R+ +
Sbjct: 87 L---NDGLVCVDVDTDHPGIVDAVEDWARSLGGDYVAKVGGKGVSVFV-RLEDPDLHLPG 142
Query: 118 TTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPH--RFKVEDTPLLSEEDVEYLFK 175
+DIL G+ + + K Y W ++D P L+E + L
Sbjct: 143 KLHVGDHLIDILASGRQTIVPPSMHTSGKRYRWVGDVALEDSSLDDLPSLNETAWQALLD 202
Query: 176 FFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCF 217
+ L ++ +++ + +Y T
Sbjct: 203 AL-GVHGDLAGKGSALGSGQSYEKDGFSKYLEDLATESFDHM 243
>gi|283832365|ref|ZP_06352106.1| conserved hypothetical protein [Citrobacter youngae ATCC 29220]
gi|291072013|gb|EFE10122.1| conserved hypothetical protein [Citrobacter youngae ATCC 29220]
Length = 558
Score = 60.1 bits (144), Expect = 1e-06, Method: Composition-based stats.
Identities = 52/365 (14%), Positives = 106/365 (29%), Gaps = 40/365 (10%)
Query: 431 EQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCV 490
I +L TG +P V + V DY + +
Sbjct: 225 CPPDICNLFTGFITEPRPGDISPFLYHVEQVICA-------------GDKVVSDYLMQWI 271
Query: 491 GMALLGGNKAQ--RFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGK 548
L+ + + I ++ V G+GK+TL+ + G Y + R
Sbjct: 272 AH-LIQHPEEKPSVAIVMKSVEGTGKNTLVRPLLQILG-PYAAQINGIRHLTGRFNST-- 327
Query: 549 ANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFI 608
L +V + E + A ++K + P
Sbjct: 328 -------LANKLLVFVDEAEMTEAGCADRLKAIISEPVFHLERKGMEP-EPVPNCARMIF 379
Query: 609 VPNKHLFVRNPDDAWW-RRYIVI-PFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
N +R + RR++V+ P + I RD + +L + + L ++
Sbjct: 380 ASNHEQVIRA---GLYERRFLVLEPDARRI--RDKDYFDRLYRWLAEDGASYLLHWLQHL 434
Query: 667 ISKGLDVDIPEVCLKAKEEERQGTDTYQAW----IDDCCDIGENLWEESHSLAKSYSEYR 722
G D P V +EE+ + ++ + L + + +
Sbjct: 435 DLAGFDPRRPPVTQALREEKIASLPLVHQFMLAELETSRPFSGMARLTATELVERFLLWS 494
Query: 723 EQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDNS 782
+ R ++ L Q+ ++ K + +G L+ F + +
Sbjct: 495 T-THRLPLSPAAARAMSGKLMQR-LGVPVQGRSGRGIGKYYELPEGDVLRQRFAVMLGEA 552
Query: 783 NIIDF 787
+ F
Sbjct: 553 TNVIF 557
>gi|11467114|ref|NP_054415.1| hypothetical protein MapooMp18 [Marchantia polymorpha]
gi|586769|sp|P38464|YMF21_MARPO RecName: Full=Uncharacterized mitochondrial protein ymf21; AltName:
Full=ORF180
gi|786199|gb|AAC09412.1| ORF180 [Marchantia polymorpha]
Length = 180
Score = 59.7 bits (143), Expect = 2e-06, Method: Composition-based stats.
Identities = 19/121 (15%), Positives = 45/121 (37%), Gaps = 13/121 (10%)
Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTG------------TPFVEGEPSQEFLDLVSG 475
+ +D +LD TG+ + + + + P + G+ F + +
Sbjct: 39 IIVFKDAVLDTITGRVEEFSPDRFCNAKLPYNIGISQLEDIPCPDIPGDLCPTFTEFLDS 98
Query: 476 YFES-EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
+ +++ + L N +QRF+++ G G+GKS + + G+ +
Sbjct: 99 FTGGKDDLKKFIRAYFNHLLRSDNLSQRFLYMMGPTGTGKSVFSLVSEVLVGSINTCHTT 158
Query: 535 A 535
Sbjct: 159 L 159
>gi|323139963|ref|ZP_08074982.1| hypothetical protein Met49242DRAFT_4370 [Methylocystis sp. ATCC
49242]
gi|322394781|gb|EFX97363.1| hypothetical protein Met49242DRAFT_4370 [Methylocystis sp. ATCC
49242]
Length = 176
Score = 59.7 bits (143), Expect = 2e-06, Method: Composition-based stats.
Identities = 32/177 (18%), Positives = 53/177 (29%), Gaps = 15/177 (8%)
Query: 1 MPVMQWKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQ--LLSSEKIDKLP--ACGFGF 56
M + E A GF P+ LG K + W++ L E + C G
Sbjct: 1 MTARIFAEHAPLYRAAGFWPRPVSLGSKA-CHVRDWQKPDGELPPETLQSWLKSHCYLGI 59
Query: 57 VCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPF-------RMN 109
+G + + D + +L P R G+ K ++ F R
Sbjct: 60 GLLMGSPFPDGTTLGALDIDHDAYTRVGHALLGDPPCCRFGR--KGMVVFVRVRGEPRNL 117
Query: 110 KEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTT-PPHRFKVEDTPLL 165
+ +K + + V IH +T + Y W PL+
Sbjct: 118 EFRVKGDVGKRFGKVAECLFSKKLCVVPPTIHRETGRPYRWVGQSLLDVDFNSLPLV 174
>gi|218670885|ref|ZP_03520556.1| hypothetical protein RetlG_04143 [Rhizobium etli GR56]
Length = 266
Score = 59.7 bits (143), Expect = 2e-06, Method: Composition-based stats.
Identities = 18/133 (13%), Positives = 42/133 (31%), Gaps = 5/133 (3%)
Query: 146 KEYTWTTPPHRFKVEDTPLL---SEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNN 202
W H + + E+ L + + V ++ +
Sbjct: 33 HPMRWPGSWHTKGAPNMCSIVGGDEQREVRLADAAKALDVDTAASRERGDRQVGQSFTTR 92
Query: 203 RQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDE 262
++T ++ + D++ MA + GSS G E R +S + + +D+
Sbjct: 93 TEWTEAQLMDVAEKLPN--TDLDWDDFNSTGMAFYDAAHGSSHGYEAFRTFSAKSAKHDD 150
Query: 263 ENFNYKWDTFDFE 275
+W+ +
Sbjct: 151 AETEARWEHYKSS 163
>gi|306822937|ref|ZP_07456313.1| hypothetical protein HMPREF0168_0873 [Bifidobacterium dentium ATCC
27679]
gi|304553569|gb|EFM41480.1| hypothetical protein HMPREF0168_0873 [Bifidobacterium dentium ATCC
27679]
Length = 583
Score = 59.7 bits (143), Expect = 2e-06, Method: Composition-based stats.
Identities = 52/367 (14%), Positives = 102/367 (27%), Gaps = 47/367 (12%)
Query: 331 KAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTD 390
W + ++ ++ D+ + N + + + K K
Sbjct: 99 NGWLRVGDDDKTLYRRNFDENEGVLKNTYKKVTSVEAEYEVPAKKFIKGMKREAAAVLKT 158
Query: 391 YRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKEL 450
V + STA E S L + R +LE +
Sbjct: 159 LSFPRVHAGIQFGSTAFIREYTSDTESCVTQLPAEDRR--------NLEPFEVH------ 204
Query: 451 YITKSTGTPFVE--GEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRF--IHI 506
F ++ +++ ++ E+ D R + +
Sbjct: 205 -----FDCEFDAKLAAEARRWIEWMTV---DEKSADNLARMF---ATPVLERHKALTFIG 253
Query: 507 RGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISE 566
G G +GK T+++ + S IM + + + L+G E
Sbjct: 254 YGRGRNGKGTIVSNMMDDPTTAAFTTTFNSRIMFPTGSPSTIQEQAPLNLVGKLWAFEPE 313
Query: 567 TNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK---HLFVRNPDDAW 623
+K ++ GD +TAR + + + + T I N+ D
Sbjct: 314 CAPIGSAQMTALKALSTGDSITARRLQQQSVNVN-NTATLVIFTNESVCLPDTEAGD--- 369
Query: 624 WRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCL--- 680
RR++ I F + DA FA + + ++ + P V
Sbjct: 370 -RRFVNIRF--KDGHTDAEFAPLWAFFNKYGVAPFMMASCLLWLES----EDPHVVNIND 422
Query: 681 -KAKEEE 686
A E
Sbjct: 423 GDAMSEY 429
>gi|294085074|ref|YP_003551834.1| hypothetical protein SAR116_1507 [Candidatus Puniceispirillum
marinum IMCC1322]
gi|292664649|gb|ADE39750.1| hypothetical protein SAR116_1507 [Candidatus Puniceispirillum
marinum IMCC1322]
Length = 728
Score = 59.4 bits (142), Expect = 2e-06, Method: Composition-based stats.
Identities = 53/335 (15%), Positives = 105/335 (31%), Gaps = 61/335 (18%)
Query: 433 DGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSG--YFESEEVMDYFTRCV 490
+G +L G V+G +L+ + E++ +Y +
Sbjct: 382 NGYYNLYQG--------------FPVKAVKG-DCGLYLEHIRQNICLGDEDLYEYVLDWM 426
Query: 491 GMALL-GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549
A+ G + + IRG G GK +N+ FG + ++S ++ N
Sbjct: 427 ADAIQNPGKRPGVALAIRGKQGVGKGVFVNVFASLFGPHAIQVTQSSHLVGNFN------ 480
Query: 550 NPSLIRLMGSRIVIISET-NENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFI 608
L +V E D+ +K + D + + + S SP +
Sbjct: 481 ----AHLRDKLLVFADEAFWAGDKRAEGVLKGLVTEDNIAIEMKGIDVQS-SPNYVRLIL 535
Query: 609 VPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKL---ETKYTLEAKKWFLKGVKA 665
N + D RR++VI +DAS+ + EA +FL
Sbjct: 536 ASNNEWIIPASAD--QRRFVVIE-ASEARMQDASYFGSIINQIENGGREALMYFLS---- 588
Query: 666 YISKGLD----VDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGEN------------LWE 709
+ L+ +IP+ ++ D+ W+ +C GE
Sbjct: 589 --ERDLNRVNLRNIPKT-EALVMQQLHSLDSVAQWLYNCLYSGEIEDDAHGIRTSWPTSV 645
Query: 710 ESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQ 744
+ +Y + ++ + L++
Sbjct: 646 SVSNFFDAYIYFCKR--HSISHPSKLAVFGRRLRE 678
>gi|283769256|ref|ZP_06342160.1| primase C-terminal 2 (PriCT-2) [Bulleidia extructa W1219]
gi|283104232|gb|EFC05611.1| primase C-terminal 2 (PriCT-2) [Bulleidia extructa W1219]
Length = 764
Score = 59.4 bits (142), Expect = 2e-06, Method: Composition-based stats.
Identities = 29/140 (20%), Positives = 51/140 (36%), Gaps = 10/140 (7%)
Query: 208 REITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQG-STYDEENFN 266
++ L N ++ EW+ V MA+ +E ++ RWS Q Y
Sbjct: 6 EDLITALEYVDPR--NLNYQEWVNVGMALKYEGAY----VDVWDRWSSQDTERYHAGECE 59
Query: 267 YKWDTFDFEEI-GDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFL 325
KW++F + I G+T K ++ + I KG F + + + K
Sbjct: 60 KKWNSFTNDGITGNTIFKMASENGYISADYQPIIKGGARELFDGETVEFNYRVIDKSMMD 119
Query: 326 YT--ADTKAWYKKDKNNVYI 343
Y + K W + Y+
Sbjct: 120 YEKLPEVKNWNPVEDIRKYL 139
>gi|227432710|ref|ZP_03914681.1| possible DNA primase [Leuconostoc mesenteroides subsp. cremoris
ATCC 19254]
gi|227351526|gb|EEJ41781.1| possible DNA primase [Leuconostoc mesenteroides subsp. cremoris
ATCC 19254]
Length = 192
Score = 59.4 bits (142), Expect = 2e-06, Method: Composition-based stats.
Identities = 19/159 (11%), Positives = 53/159 (33%), Gaps = 13/159 (8%)
Query: 594 GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVI-----PFDKPIANRDASFAQKLE 648
+++S + N+ +++ + RR ++ P + D + + +
Sbjct: 10 QDSFSFT-NHAKLLFTANEAPAIKSN-EGLRRRIKILIAKSSP-HVATSGDDDHYTEYM- 65
Query: 649 TKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLW 708
K + + + + + A E D + W+++ N
Sbjct: 66 -KERGAFVYYAMSLYME-AKNRRKMSLTKDIEDATAEWFLKGDDIENWVNEHLVEDTNSR 123
Query: 709 EESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGF 747
S+ + +Y + K S++TV +++ G+
Sbjct: 124 PRSNWIYNELKDYWAENGL--EKVPSSKTVMARIRELGY 160
>gi|322691149|ref|YP_004220719.1| hypothetical protein BLLJ_0960 [Bifidobacterium longum subsp.
longum JCM 1217]
gi|320456005|dbj|BAJ66627.1| conserved hypothetical protein [Bifidobacterium longum subsp.
longum JCM 1217]
Length = 847
Score = 59.4 bits (142), Expect = 2e-06, Method: Composition-based stats.
Identities = 49/247 (19%), Positives = 81/247 (32%), Gaps = 26/247 (10%)
Query: 437 DLETGQKVKPTK---ELYITKS--TGTPFVEGEPSQ----EFLDLVSGYFESEEVMDYFT 487
D T + T + +T + TG + LD +G + +
Sbjct: 222 DFRTATLRETTPNRVDEPMTYTVETGCTCEQAATLANEAGWILDQWTG--QDTDSTLNLQ 279
Query: 488 RCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAG 547
R + L + +G GG+GKSTL + G+Q + Q P A
Sbjct: 280 RSLAAPFLRSHPE-CAYVYQGPGGTGKSTLAKDLMEHLGDQ-ATTMSLDLLAQ---PTAM 334
Query: 548 KANPSLIRLMGSRIVIISETNENDEINAAKIK----QMTGGDCMTARLNYGNTYSESPAS 603
A + LM + + + + + +TG +AR N+ P S
Sbjct: 335 SAENKMGDLMSHLLALSDDYDPTHGRFEKSLPNLKTLLTGLLPFSARRQGENSVDGMPQS 394
Query: 604 FTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGV 663
T I N HL V +A RR+ IA++ L + + L G
Sbjct: 395 -THLITTNYHLPVS-SSEAEQRRFAF----STIASQTTRARHYLPFRRKHGFWPFMLVGA 448
Query: 664 KAYISKG 670
++ G
Sbjct: 449 ITWLKIG 455
>gi|147678840|ref|YP_001213055.1| hypothetical protein PTH_2505 [Pelotomaculum thermopropionicum SI]
gi|146274937|dbj|BAF60686.1| hypothetical membrane protein [Pelotomaculum thermopropionicum SI]
Length = 433
Score = 59.4 bits (142), Expect = 2e-06, Method: Composition-based stats.
Identities = 35/180 (19%), Positives = 57/180 (31%), Gaps = 33/180 (18%)
Query: 8 EQAKQAIHNGFKLIPLRLGD-----------KRPQR------LGKWEEQLLSSEKI---- 46
+ A + G+ +IPL +P + G+++ + S ++I
Sbjct: 3 DVALFYLALGWSVIPLHSAQGGRCTCGRSGCDKPGKHPILPAWGEYQTRRASEDEIHDWF 62
Query: 47 DKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPF 106
+ P G V G L D+D +D L TP V G+ +
Sbjct: 63 ARWPDANLGVVTGQVSG-LVVVDLD--GPAAVEAVRDRGG-LPPTPTVITGK----GYHY 114
Query: 107 RMNKEGI-KKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLL 165
+ G K LD+ G Y VA + + Y W +D PL
Sbjct: 115 YLVHPGQPTKNAAALGGIKGLDVRADGGYVVAPPSVHSSGRVYRWAKGR---SPDDLPLA 171
>gi|298530805|ref|ZP_07018207.1| Bifunctional DNA primase/polymerase [Desulfonatronospira
thiodismutans ASO3-1]
gi|298510179|gb|EFI34083.1| Bifunctional DNA primase/polymerase [Desulfonatronospira
thiodismutans ASO3-1]
Length = 500
Score = 59.4 bits (142), Expect = 3e-06, Method: Composition-based stats.
Identities = 35/219 (15%), Positives = 65/219 (29%), Gaps = 25/219 (11%)
Query: 13 AIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKL----PACGFGFVCGVGEQPLYAF 68
GF + P R +K+P ++ I K P G G ++A
Sbjct: 24 YAETGFPVFPCR--NKKPITDHGHKDATTDEAIIRKWWTRNPDAQIGTPTGPASG-VWAL 80
Query: 69 DIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDI 128
D D D +T + + P R Q F + G + + +T +D+
Sbjct: 81 DEDLPD--GPDTLEQLIDTYGPLPPTRTQQTGSGGKQFLFSWNGCQVRNSTSKIGPDIDV 138
Query: 129 LGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDK 188
G G Y + + Y W ++E + E+ + + K
Sbjct: 139 RGDGGYIILPPSGHPSGGVYQW--------------INELSPAAAPDWLSELALNPRRPK 184
Query: 189 KSIIPSKTWT--NNNNRQYTNREITAFLSCFGEEFYNGS 225
++ + T + +S E N +
Sbjct: 185 TALQDTNAATFQGTAYGRAALEREVERVSTASEGTRNDT 223
>gi|291621990|emb|CAX65023.1| gp42 protein [Vibrio phage VP58.5]
Length = 1117
Score = 59.4 bits (142), Expect = 3e-06, Method: Composition-based stats.
Identities = 20/82 (24%), Positives = 31/82 (37%), Gaps = 7/82 (8%)
Query: 195 KTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWS 254
+ N Y +E+ LS + +D W V A+H E G + WS
Sbjct: 20 QDMHGRNPLTY--QEVQECLSFISPDQ---DYDTWARVGRALHSEF--GKDGFTLFDNWS 72
Query: 255 KQGSTYDEENFNYKWDTFDFEE 276
GS Y E+ +W +F +
Sbjct: 73 SGGSNYKEKAVREQWKSFRTTD 94
>gi|309801266|ref|ZP_07695395.1| hypothetical protein HMPREF9003_0419 [Bifidobacterium dentium
JCVIHMP022]
gi|308222155|gb|EFO78438.1| hypothetical protein HMPREF9003_0419 [Bifidobacterium dentium
JCVIHMP022]
Length = 526
Score = 59.0 bits (141), Expect = 3e-06, Method: Composition-based stats.
Identities = 52/367 (14%), Positives = 102/367 (27%), Gaps = 47/367 (12%)
Query: 331 KAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTD 390
W + ++ ++ D+ + N + + + K K
Sbjct: 42 NGWLRVGDDDKTLYRRNFDENEGVLKNTYKKVTSVEAEYEVPAKKFIKGMKREAAAVLKT 101
Query: 391 YRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKEL 450
V + STA E S L + R +LE +
Sbjct: 102 LSFPRVHAGIQFGSTAFIREYTSDTESCVTQLPAEDRR--------NLEPFEVH------ 147
Query: 451 YITKSTGTPFVE--GEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRF--IHI 506
F ++ +++ ++ E+ D R + +
Sbjct: 148 -----FDCEFDAKLAAEARRWIEWMTV---DEKSADNLARMF---ATPVLERHKALTFIG 196
Query: 507 RGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISE 566
G G +GK T+++ + S IM + + + L+G E
Sbjct: 197 YGRGRNGKGTIVSNMMDDPTTAAFTTTFNSRIMFPTGSPSTIQEQAPLNLVGKLWAFEPE 256
Query: 567 TNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK---HLFVRNPDDAW 623
+K ++ GD +TAR + + + + T I N+ D
Sbjct: 257 CAPIGSAQMTALKALSTGDSITARRLQQQSVNVN-NTATLVIFTNESVCLPDTEAGD--- 312
Query: 624 WRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCL--- 680
RR++ I F + DA FA + + ++ + P V
Sbjct: 313 -RRFVNIRF--KDGHTDAEFAPLWAFFNKYGVAPFMMASCLLWLES----EDPHVVNIND 365
Query: 681 -KAKEEE 686
A E
Sbjct: 366 GDAMSEY 372
>gi|48843595|ref|YP_025168.1| helicase [Neodiprion sertifer NPV]
gi|37626280|gb|AAQ96438.1| helicase [Neodiprion sertifer NPV]
Length = 1143
Score = 59.0 bits (141), Expect = 3e-06, Method: Composition-based stats.
Identities = 24/157 (15%), Positives = 55/157 (35%), Gaps = 14/157 (8%)
Query: 485 YFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544
Y + N + + + G +GK++ ++ G V + + NR
Sbjct: 835 YLLTFAASLNIPQNYEKLLLVLTGSSNAGKTSFIS----LLGKIAVKMPSNTLFIDNRGN 890
Query: 545 EAGKANPS--LIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602
+ S + +L I+E ++ N ++ + R + + +
Sbjct: 891 GPSEMEFSRAISQLYE-----INEVHKTTAENIKNTADLS--REVVVRHAH-SACQKIML 942
Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR 639
+ P + N+ L + N D A R I++ +D +
Sbjct: 943 QYKPILCNNRMLEIENCDKAVENRLIIVYYDHVFEKK 979
>gi|322689233|ref|YP_004208967.1| hypothetical protein BLIF_1047 [Bifidobacterium longum subsp.
infantis 157F]
gi|320460569|dbj|BAJ71189.1| conserved hypothetical protein [Bifidobacterium longum subsp.
infantis 157F]
Length = 612
Score = 59.0 bits (141), Expect = 3e-06, Method: Composition-based stats.
Identities = 38/182 (20%), Positives = 74/182 (40%), Gaps = 13/182 (7%)
Query: 501 QRFIHIRGVGGSGKSTLM-NLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGS 559
Q + G GG GK+ L+ N ++ G++ A + + + + + + + G
Sbjct: 230 QLSFVLSGHGGDGKTLLLSNAVQRVLGDRKSFPAFKTTGYCDSGFSLNRESMNDM-MAGM 288
Query: 560 RIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNP 619
E E E ++ ++ G M+AR+ G YS +P + T I+ N F +
Sbjct: 289 AFAYDDEAGEVTERMLPLLRALSTGATMSARVVGGKYYSMTP-TATIVILTN-MPFADSS 346
Query: 620 DDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPE 677
+ + RR+I + P R + A +L + A + + + +G D PE
Sbjct: 347 EPSDKRRFIKVEM-HPSEGRSYEQYHAIELFIREHPAAL--YAASCRLW-EQG---DEPE 399
Query: 678 VC 679
+
Sbjct: 400 MV 401
>gi|323445092|gb|EGB01888.1| hypothetical protein AURANDRAFT_69397 [Aureococcus anophagefferens]
Length = 206
Score = 59.0 bits (141), Expect = 3e-06, Method: Composition-based stats.
Identities = 30/139 (21%), Positives = 57/139 (41%), Gaps = 12/139 (8%)
Query: 431 EQDGILDLETGQKVK-PTKELYITKSTGTPFVEGEPSQEFLDLVSGYF--------ESEE 481
+G+L L + +++++ S G + + S E +D+ + E+ +
Sbjct: 71 FNNGVLRLCDMKFSDVGFDDVFLSWSCGYDYPQEPISDEIIDIFETWLDKYARAANETVD 130
Query: 482 VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQN 541
+ + L N +R + G GG+GKS L NL+ G +Y +N +
Sbjct: 131 MKADIKTMIVETLCDKNSKERAFFLMGEGGNGKSVLCNLLCNLLG-EYAVNVPFETLT-- 187
Query: 542 RPPEAGKANPSLIRLMGSR 560
+ EA NP + R+ R
Sbjct: 188 KSIEAEGKNPFIKRMRYKR 206
>gi|48843687|ref|YP_025258.1| helicase [Neodiprion lecontii NPV]
gi|37694270|gb|AAQ99063.1| helicase [Neodiprion lecontii NPV]
Length = 1134
Score = 59.0 bits (141), Expect = 4e-06, Method: Composition-based stats.
Identities = 29/157 (18%), Positives = 62/157 (39%), Gaps = 14/157 (8%)
Query: 485 YFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP 543
+F G +L + N + + + G +GK++ + ++ + A++ + +R
Sbjct: 828 WFLLMFGASLNIPQNYEKLIVTLTGSSNAGKTSFVQVLGKI-----AVKMPANNFIDHRG 882
Query: 544 PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTG-GDCMTARLNYGNTYSESPA 602
+ S I + E NE + A KIK + + R + + + +
Sbjct: 883 NGPTEMEFSRA------ICQLYEINEVHKTTAEKIKNIADLSKEVVVRHAHSSC-QKITS 935
Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR 639
+ P I N+ L + N D A R I++ +D +
Sbjct: 936 QYKPLICNNRMLEIENFDKAVENRLIIVYYDHVFVKK 972
>gi|320450759|ref|YP_004202855.1| bifunctional DNA primase/polymerase, N- family [Thermus scotoductus
SA-01]
gi|320150928|gb|ADW22306.1| bifunctional DNA primase/polymerase, N- family [Thermus scotoductus
SA-01]
Length = 330
Score = 58.6 bits (140), Expect = 4e-06, Method: Composition-based stats.
Identities = 32/166 (19%), Positives = 55/166 (33%), Gaps = 21/166 (12%)
Query: 10 AKQAIHNGFKLIPLRLGDKRP-------QRLGKWEEQLLSSEKIDKLPACGFGFVCGVGE 62
A++ + G++ +PL G+KRP + P CG G
Sbjct: 13 AQRYLSYGYRALPLFPGEKRPHPGLVPHGLKDATGDSATLEAWWRACPECGVGL------ 66
Query: 63 QPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIP--FRMNKEGIKKKKTTE 120
L ++ D ++ E + P+ + R+ E + + T
Sbjct: 67 --LPGPEVLVLDVDAPGAWERLKEEHPALLEAPRARTPRGGVHVYLRLPPEAVGRLTATT 124
Query: 121 STQGHLDILGCGQ-YFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLL 165
+D+ G G+ Y VA T Y W R E+ PL+
Sbjct: 125 KALPGVDLRGLGRSYLVAPPTTLPTGA-YAWEVALRR--PEELPLV 167
>gi|254497903|ref|ZP_05110668.1| putative truncated Phage / plasmid primase P4 [Legionella
drancourtii LLAP12]
gi|254352901|gb|EET11671.1| putative truncated Phage / plasmid primase P4 [Legionella
drancourtii LLAP12]
Length = 301
Score = 58.6 bits (140), Expect = 4e-06, Method: Composition-based stats.
Identities = 36/159 (22%), Positives = 54/159 (33%), Gaps = 19/159 (11%)
Query: 13 AIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKI-----DKLPACGFGFVCGVGEQPLYA 67
G+ + PL KRP G W+E ++ I K P G V G L
Sbjct: 44 YCDRGWAVHPLN-KKKRPLLKG-WQENATTNPNIFMQWLQKWPWANVGIVTGNISNLLI- 100
Query: 68 FDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGI--KKKKTTESTQGH 125
+D + N+ + L +PIV + + N I T +
Sbjct: 101 --LDVDGGEGINSLRGLD--LPVSPIVVTAR----GHHYYFNCPSILSNVSTTRSGLLSN 152
Query: 126 LDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPL 164
+D G G Y A +T +Y W+ P + D P
Sbjct: 153 VDTRGRGGYITAPPSIHETGHQYYWSE-PLDGDLPDAPE 190
>gi|302539572|ref|ZP_07291914.1| predicted protein [Streptomyces sp. C]
gi|302448467|gb|EFL20283.1| predicted protein [Streptomyces sp. C]
Length = 65
Score = 58.6 bits (140), Expect = 4e-06, Method: Composition-based stats.
Identities = 12/45 (26%), Positives = 19/45 (42%)
Query: 402 AKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP 446
+ +A + ++LLD+ L GI+DL TG P
Sbjct: 1 MNAMLTQAKAAPGMVLRAELLDADPYALCTPSGIVDLHTGLLRAP 45
>gi|284162709|ref|YP_003401332.1| Bifunctional DNA primase/polymerase [Archaeoglobus profundus DSM
5631]
gi|284012706|gb|ADB58659.1| Bifunctional DNA primase/polymerase [Archaeoglobus profundus DSM
5631]
Length = 1107
Score = 58.6 bits (140), Expect = 5e-06, Method: Composition-based stats.
Identities = 39/230 (16%), Positives = 78/230 (33%), Gaps = 39/230 (16%)
Query: 8 EQAKQAIHNGFKLIPLR---LGDKRPQR-------LGKWEEQLLSSEKIDKLPAC----- 52
E AK + GF +IP+ + P+ +++++ + E+++K
Sbjct: 6 EWAKHYLEQGFSVIPVIIVPPSENNPKGNKISAVEWKEFQQRRPTLEELEKWFKHPDFPA 65
Query: 53 -------GFGFVCGVGEQPLYAFDIDSKD------EKTANTFKDTFEILHGTPIVRIGQK 99
G V G L D DS++ + A+ D + + T IV G+
Sbjct: 66 LRKGNKLGLAIVTGEISGNLTVVDFDSREVMSEVLAELADKHPDLYGKILDTWIVETGK- 124
Query: 100 PKILIPF--RMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRF 157
+ ++ K + +DI G Y VA + K Y + P
Sbjct: 125 ---GFHYYLKVKNPDPNKFTNRIGIRPGVDIRANGGYVVAPPSPHPSGKVYRFVHKP--- 178
Query: 158 KVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTN 207
E+ L+ E+ + L F + + + + + + + N
Sbjct: 179 --EEIAELTWEEYQTLLSFLEGKKRTIPRVEVKDGEGRELEESKIVEIVN 226
>gi|167582916|ref|ZP_02375790.1| inner membrane protein [Burkholderia thailandensis TXDOH]
Length = 952
Score = 58.2 bits (139), Expect = 5e-06, Method: Composition-based stats.
Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 6/65 (9%)
Query: 208 REITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNY 267
L + D W V MA+ E +G + WS+ Y+ ++
Sbjct: 5 ERARVALGYVPPD----DRDTWSQVGMALKAEF--GEEGFALWNEWSQGAQNYNGKDTRD 58
Query: 268 KWDTF 272
W +F
Sbjct: 59 VWKSF 63
>gi|167465881|ref|ZP_02330970.1| phage / plasmid primase, P4 family protein [Paenibacillus larvae
subsp. larvae BRL-230010]
Length = 90
Score = 58.2 bits (139), Expect = 5e-06, Method: Composition-based stats.
Identities = 17/93 (18%), Positives = 37/93 (39%), Gaps = 10/93 (10%)
Query: 674 DIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRI 733
+P++ + E + + A+ID+ + E + + SYS + + + +
Sbjct: 1 TMPDIIKRELAEYEKMNNPVMAFIDEG---RKVENETTKEVYLSYSAWCYENG---LRPL 54
Query: 734 STRTVTLNLKQKGFIGGIKREKIEKEWKSKRII 766
S + + + GFI +K+ K RI
Sbjct: 55 SQIQFSREMCKHGFITKLKK----ISGKPVRIF 83
>gi|29566880|ref|NP_818445.1| gp145 [Mycobacterium phage Omega]
gi|29425605|gb|AAN12787.1| gp145 [Mycobacterium phage Omega]
Length = 219
Score = 58.2 bits (139), Expect = 5e-06, Method: Composition-based stats.
Identities = 27/146 (18%), Positives = 45/146 (30%), Gaps = 17/146 (11%)
Query: 15 HNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKL----PACGFGFVCGVGEQPLYAFDI 70
G+ + PL G+KRP +++ +I K P G G
Sbjct: 76 RAGWAVFPLVPGEKRPATKNGFKDATRDEAQIRKWWTENPNYNIGLPTGRAAGF------ 129
Query: 71 DSKDEKTANTFKDTFEILHGTPIVRIGQ--KPKILIPFRMNKEGIKKKKTTESTQGHLDI 128
D D K E+ G G+ P+ + + + + +D
Sbjct: 130 DVVDIDGPEGMKSLAELGEGVLPDVHGKVATPRGFHLYVAGTDDGNRA----GVRPGIDY 185
Query: 129 LGCGQYFVAYNIHPKTKKEYTWTTPP 154
G + VA K+Y+W P
Sbjct: 186 RSTGGFVVAVP-SVVNGKQYSWVVRP 210
>gi|209401140|ref|YP_002274009.1| helicase [Helicoverpa armigera NPV NNg1]
gi|209364392|dbj|BAG74651.1| helicase [Helicoverpa armigera NPV NNg1]
Length = 1253
Score = 58.2 bits (139), Expect = 6e-06, Method: Composition-based stats.
Identities = 28/153 (18%), Positives = 59/153 (38%), Gaps = 25/153 (16%)
Query: 486 FTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF------GNQYVINAEASDI 538
G +L + + + I++ G GSGKS+ +L++ ++Y ++
Sbjct: 939 LMMHFGASLGIPTDYEKCCIYLNGEPGSGKSSFFDLLESIIVVHKRDADKYTLS------ 992
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMT-GGDCMTARLNYGNTY 597
+ + +AN + +L +I+E E N + K + Y +
Sbjct: 993 --KKETDEMEANKLISQLY-----VINELKE---CNDSFFKSTADSSKSNSVCRKYQGSQ 1042
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVI 630
A++ +V NK L + + D R+ V+
Sbjct: 1043 KYE-ANYKLLVVNNKPLHISDYDRGVRNRFCVV 1074
>gi|18138275|ref|NP_542710.1| helicase [Helicoverpa zea SNPV]
gi|18028657|gb|AAL56093.1|AF334030_18 ORF87 [Helicoverpa zea SNPV]
Length = 1253
Score = 58.2 bits (139), Expect = 6e-06, Method: Composition-based stats.
Identities = 28/153 (18%), Positives = 59/153 (38%), Gaps = 25/153 (16%)
Query: 486 FTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF------GNQYVINAEASDI 538
G +L + + + I++ G GSGKS+ +L++ ++Y ++
Sbjct: 939 LMMHFGASLGIPTDYEKCCIYLNGEPGSGKSSFFDLLESIIVVHKRDADKYTLS------ 992
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMT-GGDCMTARLNYGNTY 597
+ + +AN + +L +I+E E N + K + Y +
Sbjct: 993 --KKETDEMEANKLISQLY-----VINELKE---CNDSFFKSTADSSKSNSVCRKYQGSQ 1042
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVI 630
A++ +V NK L + + D R+ V+
Sbjct: 1043 KYE-ANYKLLVVNNKPLHISDYDRGVRNRFCVV 1074
>gi|21950724|gb|AAM78585.1| helicase [Helicoverpa armigera NPV]
Length = 1253
Score = 58.2 bits (139), Expect = 6e-06, Method: Composition-based stats.
Identities = 28/153 (18%), Positives = 59/153 (38%), Gaps = 25/153 (16%)
Query: 486 FTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF------GNQYVINAEASDI 538
G +L + + + I++ G GSGKS+ +L++ ++Y ++
Sbjct: 939 LMMHFGASLGIPTDYEKCCIYLNGEPGSGKSSFFDLLESIIVVHKRDADKYTLS------ 992
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMT-GGDCMTARLNYGNTY 597
+ + +AN + +L +I+E E N + K + Y +
Sbjct: 993 --KKETDEMEANKLISQLY-----VINELKE---CNDSFFKSTADSSKSNSVCRKYQGSQ 1042
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVI 630
A++ +V NK L + + D R+ V+
Sbjct: 1043 KYE-ANYKLLVVNNKPLHISDYDRGVRNRFCVV 1074
>gi|12597569|ref|NP_075153.1| helicase [Helicoverpa armigera nucleopolyhedrovirus G4]
gi|12483835|gb|AAG53827.1|AF271059_84 helicase [Helicoverpa armigera nucleopolyhedrovirus G4]
gi|14268753|gb|AAK57882.1|AF266701_2 helicase [Helicoverpa armigera NPV]
Length = 1253
Score = 58.2 bits (139), Expect = 6e-06, Method: Composition-based stats.
Identities = 28/153 (18%), Positives = 59/153 (38%), Gaps = 25/153 (16%)
Query: 486 FTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF------GNQYVINAEASDI 538
G +L + + + I++ G GSGKS+ +L++ ++Y ++
Sbjct: 939 LMMHFGASLGIPTDYEKCCIYLNGEPGSGKSSFFDLLESIIVVHKRDADKYTLS------ 992
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMT-GGDCMTARLNYGNTY 597
+ + +AN + +L +I+E E N + K + Y +
Sbjct: 993 --KKETDEMEANKLISQLY-----VINELKE---CNDSFFKSTADSSKSNSVCRKYQGSQ 1042
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVI 630
A++ +V NK L + + D R+ V+
Sbjct: 1043 KYE-ANYKLLVVNNKPLHISDYDRGVRNRFCVV 1074
>gi|15426395|ref|NP_203639.1| helicase [Helicoverpa armigera NPV]
gi|15384471|gb|AAK96382.1|AF303045_124 helicase [Helicoverpa armigera NPV]
Length = 1253
Score = 58.2 bits (139), Expect = 6e-06, Method: Composition-based stats.
Identities = 28/153 (18%), Positives = 59/153 (38%), Gaps = 25/153 (16%)
Query: 486 FTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF------GNQYVINAEASDI 538
G +L + + + I++ G GSGKS+ +L++ ++Y ++
Sbjct: 939 LMMHFGASLGIPTDYEKCCIYLNGEPGSGKSSFFDLLESIIVVHKRDADKYTLS------ 992
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMT-GGDCMTARLNYGNTY 597
+ + +AN + +L +I+E E N + K + Y +
Sbjct: 993 --KKETDEMEANKLISQLY-----VINELKE---CNDSFFKSTADSSKSNSVCRKYQGSQ 1042
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVI 630
A++ +V NK L + + D R+ V+
Sbjct: 1043 KYE-ANYKLLVVNNKPLHISDYDRGVRNRFCVV 1074
>gi|153810985|ref|ZP_01963653.1| hypothetical protein RUMOBE_01376 [Ruminococcus obeum ATCC 29174]
gi|149832873|gb|EDM87956.1| hypothetical protein RUMOBE_01376 [Ruminococcus obeum ATCC 29174]
Length = 196
Score = 57.8 bits (138), Expect = 7e-06, Method: Composition-based stats.
Identities = 32/164 (19%), Positives = 49/164 (29%), Gaps = 11/164 (6%)
Query: 7 KEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKL----PACGFGFVCGVGE 62
KE A G + PL DK P +G + I++ P G G
Sbjct: 2 KEWALHYAEMGLAVFPLVCRDKVPAVVGGCKVATTERTTIERWWDKNPQYNIGIATGNKS 61
Query: 63 QPLYAFDIDSKDEKTANT---FKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTT 119
L D+D K + +D P + + + +
Sbjct: 62 SGLVVIDLDVDKNKGIDGYDVLRDWQNKHGKLPETWQSITGRGGYHYFYKDAIVHSNRVG 121
Query: 120 ESTQGHLDILGCGQYFVAYN-IHPKTKKEYTWTTPPHRFKVEDT 162
+DI G G Y VA +HP Y W P +++
Sbjct: 122 --LYEGVDIRGEGGYIVAPPSVHPN-GNIYEWEQGPEEYEIAQV 162
>gi|313158932|gb|EFR58311.1| conserved hypothetical protein [Alistipes sp. HGB5]
Length = 406
Score = 57.8 bits (138), Expect = 7e-06, Method: Composition-based stats.
Identities = 37/229 (16%), Positives = 72/229 (31%), Gaps = 37/229 (16%)
Query: 457 GTPFVEGE-PSQEFLDLVSGYFESE-EV-MDYFTRCVGMALLGGNKAQRFIHIRGVGGSG 513
PF + D + F + E+ DY L + + + +G
Sbjct: 84 PIPFQPADGIFPHIHDFFAHIFGEQVELGYDYLQLLY---LRPLQRLPVLLLVSDERNTG 140
Query: 514 KSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI 573
K+T +NL+K FG N D + MG ++ + E N
Sbjct: 141 KTTFLNLLKSIFGGNVTFNTN-EDFRSQFNDD----------WMGKLLICVDEVLLNRRE 189
Query: 574 NAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPN---KHLFVRNPDDAWW-RRYIV 629
++ +IK ++ A + E + N + + + +W RR
Sbjct: 190 DSERIKNLSTARSYKAEAKGRDR-REVEFFGKFVLCSNNERNPVLIEAAETRYWVRRVPP 248
Query: 630 IPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEV 678
+P+D D K+ + + G+ Y+ + + E
Sbjct: 249 LPYD------DQHLLAKMRAE---------IPGLLFYLQQRMLSSHEES 282
>gi|253569515|ref|ZP_04846925.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
gi|251841534|gb|EES69615.1| conserved hypothetical protein [Bacteroides sp. 1_1_6]
Length = 396
Score = 57.8 bits (138), Expect = 7e-06, Method: Composition-based stats.
Identities = 25/146 (17%), Positives = 52/146 (35%), Gaps = 20/146 (13%)
Query: 511 GSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN 570
+GKST +N +K FG+ N + N G ++++ E N
Sbjct: 132 NTGKSTFLNFLKAVFGDNVTFNTNEDF--------RSQFNSDWA---GKLLIVVDEVLLN 180
Query: 571 DEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK--HLFVRNPDD-AWWRRY 627
++ ++K ++ + +E + N + + + +W R
Sbjct: 181 RREDSERLKNLSTTFNYKVEAKGKDR-TEISFFAKFVLCSNNEYLPVIIDAGETRYWVRK 239
Query: 628 IVIPFDKPIANRDASFAQKLETKYTL 653
I P+ + D +F QKL+ +
Sbjct: 240 I-----NPLQDDDTNFLQKLKEEIPA 260
>gi|309780874|ref|ZP_07675614.1| regulatory prophage protein [Ralstonia sp. 5_7_47FAA]
gi|308920340|gb|EFP65997.1| regulatory prophage protein [Ralstonia sp. 5_7_47FAA]
Length = 670
Score = 57.8 bits (138), Expect = 7e-06, Method: Composition-based stats.
Identities = 41/199 (20%), Positives = 61/199 (30%), Gaps = 30/199 (15%)
Query: 8 EQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKI-DKL---PACGFGFVCGVGEQ 63
+ AK + G ++P+ K P + L + E+I D PA G G
Sbjct: 32 QAAKFYVRCGHPVVPVHPYAKNPYIKDWEQHPLRTVEEIQDHWSAHPADNVGLFMG---D 88
Query: 64 PLYAFDIDSKDEKTANTFKDTFEILHGTPIVR--------IGQKPKILIPFRMNKEGIKK 115
A DID+KD K P +R G KI + ++K
Sbjct: 89 EYVALDIDTKDGKEGARTLAWLA--AKYPPIRSTLTQRSQSGGWHKIFRLTPAQRCRLRK 146
Query: 116 KKTTESTQGH----LDIL-GCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDV 170
H LDI+ G VA + Y W ++ D P +D+
Sbjct: 147 HTNVRLGPCHANSGLDIITGNAIIVVAPSTTHV--GAYKWKD--LDAEILDMP----DDL 198
Query: 171 EYLFKFFQEITVPLVKDKK 189
L + D
Sbjct: 199 FELLVSVEHAGREPANDPA 217
>gi|325299325|ref|YP_004259242.1| hypothetical protein Bacsa_2216 [Bacteroides salanitronis DSM
18170]
gi|324318878|gb|ADY36769.1| hypothetical protein Bacsa_2216 [Bacteroides salanitronis DSM
18170]
Length = 396
Score = 57.8 bits (138), Expect = 8e-06, Method: Composition-based stats.
Identities = 26/146 (17%), Positives = 52/146 (35%), Gaps = 20/146 (13%)
Query: 511 GSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN 570
+GKST +N +K FG+ N + N G ++++ E N
Sbjct: 132 NTGKSTFLNFLKAVFGDNVTFNTNEDF--------RSQFNSDWA---GKLLIVVDEVLLN 180
Query: 571 DEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK--HLFVRNPDD-AWWRRY 627
++ ++K ++ + +E + N + + + +W R
Sbjct: 181 RREDSERLKNLSTTFNYKVEAKGKDR-TEIAFFAKFVLCSNNEYLPVIIDAGETRYWVRK 239
Query: 628 IVIPFDKPIANRDASFAQKLETKYTL 653
I P+ N D +F QKL+ +
Sbjct: 240 I-----NPLQNDDTNFLQKLKEEIPA 260
>gi|167567620|ref|ZP_02360536.1| inner membrane protein [Burkholderia oklahomensis EO147]
gi|167569133|ref|ZP_02362007.1| inner membrane protein [Burkholderia oklahomensis C6786]
Length = 953
Score = 57.8 bits (138), Expect = 8e-06, Method: Composition-based stats.
Identities = 18/98 (18%), Positives = 31/98 (31%), Gaps = 10/98 (10%)
Query: 208 REITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNY 267
L + D W V MA+ E +G + WS+ Y+ ++
Sbjct: 5 ERARVALGYVPPD----DRDTWSQVGMALKAEF--GEEGFALWNEWSQGAQNYNGKDARD 58
Query: 268 KWDTFDFEEIGDT----AKKRSTFTSLFYHHGKLIPKG 301
W +F +I K+S F + + P
Sbjct: 59 VWKSFKGGKITINTLFHLAKQSGFDPRAHRAKPVDPAE 96
>gi|329960381|ref|ZP_08298806.1| hypothetical protein HMPREF9446_00365 [Bacteroides fluxus YIT
12057]
gi|328532819|gb|EGF59601.1| hypothetical protein HMPREF9446_00365 [Bacteroides fluxus YIT
12057]
Length = 396
Score = 57.8 bits (138), Expect = 8e-06, Method: Composition-based stats.
Identities = 26/146 (17%), Positives = 52/146 (35%), Gaps = 20/146 (13%)
Query: 511 GSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN 570
+GKST +N +K FG+ N + N G ++++ E N
Sbjct: 132 NTGKSTFLNFLKAVFGDNVTFNTNEDF--------RSQFNSDWA---GKLLIVVDEVLLN 180
Query: 571 DEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK--HLFVRNPDD-AWWRRY 627
++ ++K ++ + +E + N + + + +W R
Sbjct: 181 RREDSERLKNLSTTFNYKVEAKGKDR-TEIAFFAKFVLCSNNEYLPVIIDAGETRYWVRK 239
Query: 628 IVIPFDKPIANRDASFAQKLETKYTL 653
I P+ N D +F QKL+ +
Sbjct: 240 I-----NPLQNDDTNFLQKLKEEIPA 260
>gi|107023303|ref|YP_621630.1| inner membrane protein [Burkholderia cenocepacia AU 1054]
gi|116690386|ref|YP_836009.1| inner membrane protein [Burkholderia cenocepacia HI2424]
gi|105893492|gb|ABF76657.1| inner membrane protein [Burkholderia cenocepacia AU 1054]
gi|116648475|gb|ABK09116.1| inner membrane protein [Burkholderia cenocepacia HI2424]
Length = 958
Score = 57.8 bits (138), Expect = 8e-06, Method: Composition-based stats.
Identities = 18/98 (18%), Positives = 29/98 (29%), Gaps = 10/98 (10%)
Query: 208 REITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNY 267
L + D W V MA+ E +G + WS+ Y+ ++
Sbjct: 10 ERARVALGYVPPD----DRDTWSQVGMALKAEF--GEEGFALWNEWSQGAQNYNVKDARD 63
Query: 268 KWDTFDFEEIGDT----AKKRSTFTSLFYHHGKLIPKG 301
W +F +I K F Y + P
Sbjct: 64 VWKSFKGGKITINTLFHLAKLGGFDPRAYRAKPVDPAE 101
>gi|84514718|ref|ZP_01002082.1| hypothetical protein SKA53_10869 [Loktanella vestfoldensis SKA53]
gi|84511769|gb|EAQ08222.1| hypothetical protein SKA53_10869 [Loktanella vestfoldensis SKA53]
Length = 454
Score = 57.4 bits (137), Expect = 8e-06, Method: Composition-based stats.
Identities = 31/172 (18%), Positives = 58/172 (33%), Gaps = 20/172 (11%)
Query: 469 FLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQR---FIHIRGVG-GSGKSTLMNLIKYA 524
F D + ++ D F + L +AQ+ I + G+GKSTL ++
Sbjct: 110 FNDFIEYVIPNDAERDVFLDWLVWVL--RYEAQKPAWAIMLYSEKQGTGKSTLAEVLIEL 167
Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN-ENDEINAAKIKQMTG 583
FG + + R + ++ +++VI+ E + A IK +
Sbjct: 168 FGRLNTGRVNGVNKLIGRFNK---------EVLENKLVIVEEVEVKRGSPQANAIKSLVT 218
Query: 584 GDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP 635
D + Y + + N D RR+ ++ FD
Sbjct: 219 EDSIMVEAKLMPVYVQQI-HCAFLMTTNHLPLWLEESD---RRFFILNFDHH 266
>gi|134294538|ref|YP_001118273.1| inner membrane protein [Burkholderia vietnamiensis G4]
gi|134137695|gb|ABO53438.1| inner membrane protein [Burkholderia vietnamiensis G4]
Length = 958
Score = 57.4 bits (137), Expect = 9e-06, Method: Composition-based stats.
Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 6/65 (9%)
Query: 208 REITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNY 267
L + D W V MA+ E +G + WS+ Y+ ++
Sbjct: 10 ERARVALGYVPPD----DRDTWSQVGMALKAEF--GEEGFALWNEWSQGAQNYNGKDARD 63
Query: 268 KWDTF 272
W +F
Sbjct: 64 VWKSF 68
>gi|213159302|ref|YP_002321345.1| dnahel [Oryctes rhinoceros virus]
gi|202073488|gb|ACH96164.1| dnahel [Oryctes rhinoceros virus]
Length = 1240
Score = 57.4 bits (137), Expect = 9e-06, Method: Composition-based stats.
Identities = 34/164 (20%), Positives = 62/164 (37%), Gaps = 16/164 (9%)
Query: 458 TPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTL 517
TPF + +S F+ E V++Y VG + N ++ + I+G G +GKS
Sbjct: 840 TPFQNTLADELLSICMSANFKPETVVNYL-TAVGATFIPINVLKKLLLIQGDGNTGKSLA 898
Query: 518 MNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK 577
I + S +M+ + V+++E ++N ++
Sbjct: 899 CKKITSIAQPSAGRFEDISAVMKR------------ASVAEYSAVVLNEA---YKLNPSQ 943
Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDD 621
+K +TG D + + Y Y F N H+ + DD
Sbjct: 944 LKIITGNDDTSVSIFYSQKYELQQMQTIMFGATNVHVSFKGTDD 987
>gi|254181452|ref|ZP_04888049.1| conserved hypothetical protein [Burkholderia pseudomallei 1655]
gi|184211990|gb|EDU09033.1| conserved hypothetical protein [Burkholderia pseudomallei 1655]
Length = 953
Score = 57.4 bits (137), Expect = 9e-06, Method: Composition-based stats.
Identities = 18/98 (18%), Positives = 30/98 (30%), Gaps = 10/98 (10%)
Query: 208 REITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNY 267
L + D W V MA+ E +G + WS+ Y+ ++
Sbjct: 5 ERARVALGYVPPD----DRDTWSQVGMALKAEF--GEEGFALWNEWSQGAQNYNGKDARD 58
Query: 268 KWDTFDFEEIGDT----AKKRSTFTSLFYHHGKLIPKG 301
W +F +I KR F + + P
Sbjct: 59 VWKSFKGGKITINTLFHLAKRGGFDPRAHRAKPVDPAE 96
>gi|325292915|ref|YP_004278779.1| regulatory protein RepA [Agrobacterium sp. H13-3]
gi|325060768|gb|ADY64459.1| putative regulatory protein RepA [Agrobacterium sp. H13-3]
Length = 747
Score = 57.4 bits (137), Expect = 9e-06, Method: Composition-based stats.
Identities = 50/271 (18%), Positives = 81/271 (29%), Gaps = 36/271 (13%)
Query: 2 PVMQWKEQAKQAIHNGFKLIPLRLGDKRP----QRLGKWEEQLLSSEKIDKLPACGFGFV 57
PV + A++ + G I + LG+K P G + L K P G
Sbjct: 37 PVFPCRSHAEEHVDQGTGEI-ITLGEKTPLTPNGFKGATLNRPLIERMWTKYPKAAVGLP 95
Query: 58 CGVGEQPLYAFDIDSKDEKTANTF---KDTFEILHGTP-IVRIGQKPKILIPFRMNKEGI 113
G +A DID+K AN F + P R+ P +
Sbjct: 96 TGEKTGF-FALDIDNK-PGGANGFDWLSEMEAEHGPLPDTARV-TSPNGGLHIYFKYVVG 152
Query: 114 KKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYL 173
+ + +DI G Y +A + Y W T ++ D P
Sbjct: 153 TRNRGALG--AGVDIRSEGGYVLAAGSTMANGRSYKWETD--TREIADAPA--------- 199
Query: 174 FKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGE-EFYNGSHDEWIPV 232
+ ++ +P + TNN A L+ N +D +
Sbjct: 200 --WLLDLLLPKSAPAHTQYSLSAATNNAYVDAAVDRELADLAGAPMGSRNNALNDAAFSI 257
Query: 233 VMAVHHETRGSSKGKEI-------A-RRWSK 255
V G S+ + + R WS+
Sbjct: 258 GTIVGAGALGESEARALLQDVARGWGRDWSR 288
>gi|171317656|ref|ZP_02906841.1| Primase 2 [Burkholderia ambifaria MEX-5]
gi|171097184|gb|EDT42034.1| Primase 2 [Burkholderia ambifaria MEX-5]
Length = 953
Score = 57.4 bits (137), Expect = 9e-06, Method: Composition-based stats.
Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 6/65 (9%)
Query: 208 REITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNY 267
L + D W V MA+ E +G + WS+ Y+ ++
Sbjct: 5 ERARVALGYVPPD----DRDTWSQVGMALKAEF--GEEGFALWNEWSQGAQNYNGKDARD 58
Query: 268 KWDTF 272
W +F
Sbjct: 59 VWKSF 63
>gi|211731726|gb|ACJ10075.1| predicted P-loop ATPase [Bacteriophage APSE-5]
Length = 654
Score = 57.4 bits (137), Expect = 9e-06, Method: Composition-based stats.
Identities = 85/576 (14%), Positives = 175/576 (30%), Gaps = 97/576 (16%)
Query: 206 TNREITAFLSCFGEEFYNGSHDEWIPVV--MAVHHETRGSSKGKEIARRWSKQGSTYDEE 263
T ++ + L ++ W+ + +A +T + K + WS + D E
Sbjct: 135 TFEDLRSALWYPKILNQAENYPSWVDMGNRLAWFKDTHFEDEAKTMWLDWSSAAAKGDIE 194
Query: 264 NFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGH 323
KW + G SL G + P A R K + +
Sbjct: 195 AAEAKWAELRADRTG-----YQAIFSLAQKAGWVNPG---AERL-----KTAVATVDEFD 241
Query: 324 FLYTADTKAW--YKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSK 381
L + W +K++K + I + + A + V ++ +E +K
Sbjct: 242 DLTNTENSKWPTFKRNKTSGQIEATIDNAAKAVMCADFVGVEIRFDAFRDEIMFAPVGTK 301
Query: 382 SPRFWFNTDY--RRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSS-SRFLGEQDGILDL 438
+ + + DY R +E+ + + + + + DS+
Sbjct: 302 EWQTFTDADYSRLRITMEKRGFRAVGRELIRDVVLLAADENPFDSAMEWL---------- 351
Query: 439 ETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEE------VMDYFTRCV-G 491
+E + + +E+ V Y + G
Sbjct: 352 --------------------KSLEWDGIPRIETFYHTHLGTEDTTYTRAVSRYMWTALAG 391
Query: 492 MALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANP 551
L G KA + G GSGKS+ ++ + + + E
Sbjct: 392 RVLKPGIKADMVPILVGAQGSGKSS----------GVAALSPDPTFFTEISFAEKDD--- 438
Query: 552 SLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARL---NYGNTYSESPASFTPFI 608
L R M R +++E +E +N +++ + T + ++ P
Sbjct: 439 DLARKM--RGCLVAEISELRGLNTKELESIKAFVTRTHEKWIPKFKEFATQFPRRSLSIG 496
Query: 609 VPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYIS 668
N+ F+ + RR++ + + D +K + W + + +
Sbjct: 497 TTNEDEFLGDKTGN--RRWLPVE----VGKMDVEGIEKDVIQL------WA-EAREVFNK 543
Query: 669 KGLDVDIPEVCLKAKEE-ERQG---TDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQ 724
G+ E E + + W+D+ D+ + +S RE
Sbjct: 544 TGIQFQEAEQLANQVHEKYFIKDAWQEIIERWLDEP-DLMTGQKPRARQFLRSADILRE- 601
Query: 725 ELNYDRKRISTRT---VTLNLKQKGFIGGIKREKIE 757
LN + K IS R + L+ F ++R +
Sbjct: 602 ALNLEPKNISRREQMRMGHVLQNCNFKQVLRRVDGK 637
>gi|167618366|ref|ZP_02386997.1| inner membrane protein [Burkholderia thailandensis Bt4]
Length = 958
Score = 57.4 bits (137), Expect = 1e-05, Method: Composition-based stats.
Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 6/65 (9%)
Query: 208 REITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNY 267
L + D W V MA+ E +G + WS+ Y+ ++
Sbjct: 10 ERARVALGYVPPD----DRDTWSQVGMALKAEF--GEEGFALWNEWSQGAQNYNGKDARD 63
Query: 268 KWDTF 272
W +F
Sbjct: 64 VWKSF 68
>gi|330818031|ref|YP_004361736.1| primase 2 [Burkholderia gladioli BSR3]
gi|327370424|gb|AEA61780.1| primase 2 [Burkholderia gladioli BSR3]
Length = 953
Score = 57.4 bits (137), Expect = 1e-05, Method: Composition-based stats.
Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 6/65 (9%)
Query: 208 REITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNY 267
L + D W V MA+ E +G + WS+ Y+ ++
Sbjct: 5 ERARVALGYVPPD----DRDTWRQVGMALKAEF--GEEGFALWNEWSQGAQNYNGKDARD 58
Query: 268 KWDTF 272
W +F
Sbjct: 59 VWKSF 63
>gi|76809069|ref|YP_332699.1| inner membrane protein [Burkholderia pseudomallei 1710b]
gi|237811419|ref|YP_002895870.1| primase C 2 (PriCT-2) family [Burkholderia pseudomallei MSHR346]
gi|254260840|ref|ZP_04951894.1| DNA primase TraC [Burkholderia pseudomallei 1710a]
gi|76578522|gb|ABA47997.1| inner membrane protein [Burkholderia pseudomallei 1710b]
gi|237505486|gb|ACQ97804.1| primase C 2 (PriCT-2) family [Burkholderia pseudomallei MSHR346]
gi|254219529|gb|EET08913.1| DNA primase TraC [Burkholderia pseudomallei 1710a]
Length = 953
Score = 57.4 bits (137), Expect = 1e-05, Method: Composition-based stats.
Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 6/65 (9%)
Query: 208 REITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNY 267
L + D W V MA+ E +G + WS+ Y+ ++
Sbjct: 5 ERARVALGYVPPD----DRDTWRQVGMALKAEF--GEEGFALWNEWSQGAQNYNGKDARD 58
Query: 268 KWDTF 272
W +F
Sbjct: 59 VWKSF 63
>gi|170733820|ref|YP_001765767.1| primase 2 [Burkholderia cenocepacia MC0-3]
gi|169817062|gb|ACA91645.1| Primase 2 [Burkholderia cenocepacia MC0-3]
Length = 953
Score = 57.4 bits (137), Expect = 1e-05, Method: Composition-based stats.
Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 6/65 (9%)
Query: 208 REITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNY 267
L + D W V MA+ E +G + WS+ Y+ ++
Sbjct: 5 ERARVALGYVPPD----DRDTWRQVGMALKAEF--GEEGFALWNEWSQGAQNYNGKDARD 58
Query: 268 KWDTF 272
W +F
Sbjct: 59 VWKSF 63
>gi|254253429|ref|ZP_04946747.1| Superfamily II helicase [Burkholderia dolosa AUO158]
gi|124896038|gb|EAY69918.1| Superfamily II helicase [Burkholderia dolosa AUO158]
Length = 958
Score = 57.4 bits (137), Expect = 1e-05, Method: Composition-based stats.
Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 6/65 (9%)
Query: 208 REITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNY 267
L + D W V MA+ E +G + WS+ Y+ ++
Sbjct: 10 ERARVALGYVPPD----DRDTWRQVGMALKAEF--GEEGFALWNEWSQGAQNYNGKDARD 63
Query: 268 KWDTF 272
W +F
Sbjct: 64 VWKSF 68
>gi|9964401|ref|NP_064869.1| putative NTPase [Amsacta moorei entomopoxvirus 'L']
gi|9944610|gb|AAG02793.1|AF250284_87 AMV087 [Amsacta moorei entomopoxvirus 'L']
Length = 726
Score = 57.4 bits (137), Expect = 1e-05, Method: Composition-based stats.
Identities = 38/238 (15%), Positives = 73/238 (30%), Gaps = 43/238 (18%)
Query: 425 SSRFLGEQDGILDLETGQKVKP-TKELYITK-STGTPFVEGEPSQEFLDLVSGYFESEEV 482
+ + +G+ DL+ + + YI + + E EE
Sbjct: 435 NPYIIQFNNGVYDLKESKFYTGENAKKYIRLNYIKIDYKDIED-----------MSDEEK 483
Query: 483 MDY------FTRCVGMALLGGNKAQRFI-----------------HIRGVGGSGKSTLMN 519
+ + + + + N + + G GKST+
Sbjct: 484 IKFENNYNILLKLFNLVIPKSNPKRIVFETNLSSVLHYCHKSVITILYGPTSGGKSTIKY 543
Query: 520 LIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISE--TNENDEINAAK 577
L++ + ++ + QN P+ N L ++ + SE N N+
Sbjct: 544 LLRQLLFDMFLE--PPIEFYQNYIPK-NSPNSWLGKVEDKLVSFASEGDVNRNEVFLNKN 600
Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP 635
IKQ T + R + + T FI N + D A +R VI ++
Sbjct: 601 IKQYT-EQYILGRDLNKSK-CVHKNTLTQFIDLNPKPMFSSVDPALVKRIAVIEINET 656
>gi|254190716|ref|ZP_04897223.1| conserved hypothetical protein [Burkholderia pseudomallei Pasteur
52237]
gi|157938391|gb|EDO94061.1| conserved hypothetical protein [Burkholderia pseudomallei Pasteur
52237]
Length = 922
Score = 57.0 bits (136), Expect = 1e-05, Method: Composition-based stats.
Identities = 13/65 (20%), Positives = 22/65 (33%), Gaps = 6/65 (9%)
Query: 208 REITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNY 267
L + D W V MA+ E +G + WS+ Y+ ++
Sbjct: 5 ERARVALGYVPPD----DRDTWRQVGMALKAEF--GEEGFALWNEWSQGAQNYNGKDARD 58
Query: 268 KWDTF 272
W +F
Sbjct: 59 VWKSF 63
>gi|318060883|ref|ZP_07979604.1| hypothetical protein SSA3_23263 [Streptomyces sp. SA3_actG]
gi|318075930|ref|ZP_07983262.1| hypothetical protein SSA3_04265 [Streptomyces sp. SA3_actF]
Length = 296
Score = 57.0 bits (136), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/155 (18%), Positives = 42/155 (27%), Gaps = 24/155 (15%)
Query: 17 GFKLIPLRLGDKRP----------------QRLGKWEEQLLSSEKIDK-LPACGFGFVCG 59
G+ + PLR G KRP LG + ++I + + +
Sbjct: 16 GWPVFPLRPGSKRPALHGETRCPRSGPCASGHLGWEQRATTDPDRIRRAWASGDYNVGLA 75
Query: 60 VGEQPLYAFDIDSKD-----EKTANTFKDTFEILHG-TPIVRIGQKPKILIPFRMNKEGI 113
G L D+D A + E P R + P
Sbjct: 76 TGPANLLVVDLDVPKPGAEGPDGAAHLRALTERHGQPMPSTRTVRTPSGGAHLYFPAPLA 135
Query: 114 KKKKTTESTQGH-LDILGCGQYFVAYNIHPKTKKE 147
+ T T +D G Y VA T +
Sbjct: 136 ARLHNTAGTLAPLVDTRAWGGYVVAPGSILPTGRY 170
>gi|237813308|ref|YP_002897759.1| primase C 2 (PriCT-2) family [Burkholderia pseudomallei MSHR346]
gi|237503709|gb|ACQ96027.1| primase C 2 (PriCT-2) family [Burkholderia pseudomallei MSHR346]
Length = 949
Score = 57.0 bits (136), Expect = 1e-05, Method: Composition-based stats.
Identities = 20/98 (20%), Positives = 31/98 (31%), Gaps = 10/98 (10%)
Query: 208 REITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNY 267
L + D W V MAV E +G + WS+ +Y+ ++
Sbjct: 5 ERARVALGYVPPD----DRDTWRQVGMAVKAEF--GEEGFSLWSEWSQGAQSYNAKDARD 58
Query: 268 KWDTFDFEEIGDT----AKKRSTFTSLFYHHGKLIPKG 301
W +F +I KR F Y + P
Sbjct: 59 VWKSFKGGKITINTLYHLAKRGGFDPRAYRAKPIKPAE 96
>gi|15805557|ref|NP_294253.1| hypothetical protein DR_0530 [Deinococcus radiodurans R1]
gi|6458224|gb|AAF10112.1|AE001911_7 hypothetical protein DR_0530 [Deinococcus radiodurans R1]
Length = 891
Score = 57.0 bits (136), Expect = 1e-05, Method: Composition-based stats.
Identities = 32/157 (20%), Positives = 50/157 (31%), Gaps = 22/157 (14%)
Query: 19 KLIPLRLGDKRPQRLGK------WEEQLLSSEK-IDKLPACGFGFVCGVGEQPLYAFDID 71
L+P+ G K P+ G W ++ + + P G G + + D D
Sbjct: 20 ALVPVPQGTKGPRAKGWDSDPAQWITTPSAAREYLTAHPGAGVGLLHSESQTAALDIDHD 79
Query: 72 SKDEKTANTFKDTFEILHGTPIV--------RIGQKPKILIPFRM--NKEGIKKKKTTES 121
A D +L P I + P L R + KK
Sbjct: 80 GAALALAAVGVDLAAVLASNPYRVRGKKGEKPIFRVPDGLSLNRHALSWPDPSGKKGPGG 139
Query: 122 TQGHL---DILGCG--QYFVAYNIHPKTKKEYTWTTP 153
L ++ G Q + ++HP T + Y WT P
Sbjct: 140 RPAPLTIFELRGGAGVQDVMPPSVHPDTGRPYEWTGP 176
>gi|310286604|ref|YP_003937862.1| phage primase [Bifidobacterium bifidum S17]
gi|309250540|gb|ADO52288.1| putative phage primase [Bifidobacterium bifidum S17]
Length = 795
Score = 57.0 bits (136), Expect = 1e-05, Method: Composition-based stats.
Identities = 38/183 (20%), Positives = 72/183 (39%), Gaps = 15/183 (8%)
Query: 501 QRFIHIRGVGGSGKSTLM-NLIKYAFGN--QYVINAEASDIMQNRPPEAGKANPSLIRLM 557
Q + G GG GK+ LM N ++ G+ Y + A + + N ++
Sbjct: 230 QLSFVLSGHGGDGKTLLMVNAVQSVLGDRKSYPAFSAARYCEKGFGLASESMNDAMA--- 286
Query: 558 GSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVR 617
G V E+ E ++ ++ G + AR+ G YS +P + T I+ N F
Sbjct: 287 GMAFVYDDESAGVTEAMLPALRSLSTGATVNARVVGGKYYSMTP-TATIVILTN-MPFAD 344
Query: 618 NPDDAWWRRYIVIPFDKPIANR-DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIP 676
+ + + RR++ + + D A +L + A + + + +G D P
Sbjct: 345 SSEPSDKRRFVKVEMHRSDGRSFDEYHAIELFIREHPAAL--YAASCRLW-EQG---DEP 398
Query: 677 EVC 679
E+
Sbjct: 399 ELV 401
>gi|212499708|ref|YP_002308516.1| predicted P-loop ATPase [Bacteriophage APSE-2]
gi|238898740|ref|YP_002924422.1| APSE-2 prophage; predicted P-loop ATPase [Bacteriophage APSE-2]
gi|211731677|gb|ACJ10165.1| predicted P-loop ATPase [Bacteriophage APSE-2]
gi|229466500|gb|ACQ68274.1| APSE-2 prophage; predicted P-loop ATPase [Bacteriophage APSE-2]
Length = 745
Score = 57.0 bits (136), Expect = 1e-05, Method: Composition-based stats.
Identities = 88/573 (15%), Positives = 184/573 (32%), Gaps = 91/573 (15%)
Query: 206 TNREITAFLSCFGEEFYNGSHDEWIPVV--MAVHHETRGSSKGKEIARRWSKQGSTYDEE 263
T ++ + L ++ W+ + +A +T + K + WS + D E
Sbjct: 226 TFEDLRSALWYPKILNQAENYPSWVDMGNRLAWFKDTHFEDEAKTMWLDWSSAAAKGDIE 285
Query: 264 NFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGH 323
KW + G SL G + P A R K + +
Sbjct: 286 AAEAKWAELRADRTG-----YQAIFSLAQKAGWVNPG---AERL-----KTAVATVDEFD 332
Query: 324 FLYTADTKAW--YKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSK 381
L + W +K++K + I + + A + V ++ +E +K
Sbjct: 333 DLTNTENSKWPTFKRNKTSGQIEATIDNAAKAVMYADFVGVEIRFDTFRDEIMFAPVGTK 392
Query: 382 SPRFWFNTDY--RRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSS-SRFLGEQDGILDL 438
+ + + DY R +E+ + + + + + DS+
Sbjct: 393 EWQTFTDADYSRLRITMEKRGFRAVGRELIRDVVLLAAVENPFDSAMEWL---------- 442
Query: 439 ETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEE------VMDYFTRCV-G 491
+E + + +E+ V Y + G
Sbjct: 443 --------------------KSLEWDGIPRIETFYHTHLGTEDTTYTRAVSRYMWTALAG 482
Query: 492 MALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANP 551
L G KA + G GSGKS+ ++ + + + E
Sbjct: 483 RVLKPGIKADMVPILVGAQGSGKSS----------GVAALSPDPTFFTEISFAEKDD--- 529
Query: 552 SLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARL---NYGNTYSESPASFTPFI 608
L R M R +++E +E +N +++ + T + ++ P
Sbjct: 530 DLARKM--RGCLVAEISELRGLNTKELESIKAFVTRTHEKWIPKFKEFATQFPRRSLSIG 587
Query: 609 VPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLK-GVKAYI 667
N+ F+ + RR++ + + D +K + EA++ F + G++
Sbjct: 588 TTNEDEFLGDKTGN--RRWLPVE----VGKMDVEGIKKDVIQLWAEAREVFNETGIQFQE 641
Query: 668 SKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELN 727
++ L + E K+ ++ + W+D+ D+ + +S RE LN
Sbjct: 642 AEQLANQVHEKYFI-KDAWQE---IIERWLDEP-DLMTGQKPRARQFLRSADILRE-ALN 695
Query: 728 YDRKRISTRT---VTLNLKQKGFIGGIKREKIE 757
+ K IS R + L+ F ++R +
Sbjct: 696 LEPKNISRREQMRMGHVLQNCNFKQVLRRVDGK 728
>gi|33603114|ref|NP_890674.1| hypothetical protein BB4140 [Bordetella bronchiseptica RB50]
gi|33568745|emb|CAE34503.1| phage-related hypothetical protein [Bordetella bronchiseptica RB50]
Length = 700
Score = 56.7 bits (135), Expect = 1e-05, Method: Composition-based stats.
Identities = 28/178 (15%), Positives = 55/178 (30%), Gaps = 19/178 (10%)
Query: 129 LGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDK 188
+G G++F H T E + + + + L + +E P +
Sbjct: 157 IGYGRHFATLG-HNGTGIEAYAKGRYFTVTEQR---IRDGGLICLAAYIEETLAP--RHG 210
Query: 189 KSIIPSKTWTNNNN-RQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGK 247
+ T T E+ + L E Y+ W+ + +A+ G+
Sbjct: 211 ARRATNAGMTEVVPVNAKTVTELRSALLYMRAEDYHL----WVNMGLALR---ELGETGR 263
Query: 248 EIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLAS 305
+ WS +D ++ KW++F + HG + P A
Sbjct: 264 GLWMEWSATSEKFDSKDAAKKWNSFKPTGT-----SYQAVFAEAARHGWVNPGRSDAQ 316
>gi|167032204|ref|YP_001667435.1| bifunctional DNA primase/polymerase [Pseudomonas putida GB-1]
gi|166858692|gb|ABY97099.1| Bifunctional DNA primase/polymerase [Pseudomonas putida GB-1]
Length = 920
Score = 56.7 bits (135), Expect = 1e-05, Method: Composition-based stats.
Identities = 44/218 (20%), Positives = 66/218 (30%), Gaps = 62/218 (28%)
Query: 2 PVMQWKEQAKQAIHN-GFKLIPLRLGDKRPQRLGK-----WEEQLLSSEK-IDKLPACGF 54
P + A++ I L+P+ G K P + G + + S+E+ P+
Sbjct: 5 PTPTTADWARRYIQTFNLALVPMDPGTKGPTQEGWNKPGGYFTDVASAEQFWVANPSHNL 64
Query: 55 GFVCGVGE----------------QPLYAFDIDSKDEKTA------NTFKDTFEILHGTP 92
G V G Q + D+D+ E F+ F + G
Sbjct: 65 GVVLGPSRVCSLDVDDVEFTRLVLQQTHGIDVDALAESYPTSVGNPARFRIMFRVPDGVE 124
Query: 93 IVRIG------QKPKILIP---------------------FRMNKEGIKKKKTTESTQGH 125
+ R P +I RM E KK E G
Sbjct: 125 LKRHALVWPNKNDPDGIIHKGLMAQVRAAVDAKDEAREAALRMAAEPFKKLTVFELRAGL 184
Query: 126 LDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTP 163
+ Q + +IHP T K YTW P + D P
Sbjct: 185 V------QDVLPPSIHPGTGKPYTWRKAPDANGLPDLP 216
Score = 55.9 bits (133), Expect = 3e-05, Method: Composition-based stats.
Identities = 71/486 (14%), Positives = 142/486 (29%), Gaps = 41/486 (8%)
Query: 276 EIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYK 335
+ R +S G G K F++ + ++ D K
Sbjct: 392 DEAADVDARQGDSSTA---GSSADGGQGGEGLVLKIAKRRFALVEGTTNVWDMDKGQSMK 448
Query: 336 KDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQN 395
+ + + S LVS ++ + E + +SK T R
Sbjct: 449 RSGFEALVGKPLAKQWMESADKKLVSSEQ----VKELEQARKMSSKKGGALNLTPLDRYV 504
Query: 396 VEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDG-ILDLETGQKVK---PTKELY 451
+ +K + S+ L D+ +L ++D++ +Y
Sbjct: 505 YIDGTKEAWDREKKRRLPEGSVKMALGDAYQLWLNSPSRRVVDVDHIVFDPTMTKDPAIY 564
Query: 452 ITKSTGTPFVE--GEPSQEFLDLVSGYFESEEVM--DYFTRCVGMAL--LGGNKAQRFIH 505
I G P + + E L + + + + + D+ + + L +G +
Sbjct: 565 INTFEGLPLGPVRDDAACENLRWLISFLCNHDAVALDWLVKWLAYPLQHMGAKMDTAVLF 624
Query: 506 IRGVGGSGKST-LMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVII 564
+ GSGKS +++ +G Y + + N G +
Sbjct: 625 HSTMEGSGKSLLFADIMGELYGR-YGATVGQTQLEGNFNAWQS----------GKLWAVF 673
Query: 565 SET-NENDEINA-AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHL-FVRNPDD 621
E + + N KIK M G + + N + E+ + F+ + D
Sbjct: 674 EEVVSRDQRYNQVGKIKHMITGKTVRMESKFINGWEEANHMNSVFLSNEIMPWPISESD- 732
Query: 622 AWWRRYIVI-PFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCL 680
RR +V+ P + R + A++L W L ++ E
Sbjct: 733 ---RRMLVMWPLETLPPERQKAIARELANGGVAALYGWLLDVELGEFNQRTRPPETEARQ 789
Query: 681 KAKEEERQGTDT-YQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVT 739
+ E R T + W G + + + E+ +S +
Sbjct: 790 RLVELSRTAWQTFFYLWRAGELGHGLWGCCLTSDVYAMFLEWCSHNKENS---MSHTKFS 846
Query: 740 LNLKQK 745
L K
Sbjct: 847 LMFSAK 852
>gi|211731819|gb|ACJ10131.1| predicted P-loop ATPase [Bacteriophage APSE-6]
Length = 661
Score = 56.7 bits (135), Expect = 2e-05, Method: Composition-based stats.
Identities = 84/581 (14%), Positives = 176/581 (30%), Gaps = 106/581 (18%)
Query: 206 TNREITAFLSCFGEEFYNGSHDEWIPVV--MAVHHETRGSSKGKEIARRWSKQGSTYDEE 263
T ++ + L ++ WI + +A +TR + K + WS + D E
Sbjct: 141 TFEDLRSALWYPKILNQAENYPSWIDMGNRLARFKDTRFEDEAKTMWLDWSSAAAKGDIE 200
Query: 264 NFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGH 323
KW + G SL G + P A R A+ ++ +
Sbjct: 201 AAEAKWAELRADRTG-----YQAIFSLAQKAGWVNPG---AERLK----TAVATVDEFDD 248
Query: 324 FLYTADTKAW--YKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSK 381
+ W +K+DK + I + + A + V ++ L +E +K
Sbjct: 249 LTDPTENSKWPTFKRDKTSGQIEATIDNAAKAVMCADFVGVEIRFDALRDEIMFAPVGTK 308
Query: 382 SPRFWFNTDY--RRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSS-SRFLGEQDGILDL 438
+ + + DY R +E+ + + + + + DS+
Sbjct: 309 EWQTFTDADYSRLRITMEKRGFRAVGRELIRDVVLLAADENPFDSAMEWL---------- 358
Query: 439 ETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEE------VMDYFTRCV-G 491
+E + + +E+ V Y + G
Sbjct: 359 --------------------KSLEWDGIPRIETFYHIHLGTEDTAYTRAVSRYMWTALAG 398
Query: 492 MALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANP 551
L G KA + G G GKS+ ++ + + + E
Sbjct: 399 RVLKPGIKADMVPILVGAQGCGKSS----------GVAALSPDPTFFTEISFAEKDD--- 445
Query: 552 SLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARL---NYGNTYSESPASFTPFI 608
L R M R +++E +E +N +++ + T + ++ P
Sbjct: 446 DLARKM--RGCLVAEISELRGLNTKELESIKAFVTRTHEKWIPKFKEFATQFPRRSLSIG 503
Query: 609 VPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYIS 668
N+ F+ + RR++ + + D +K + W + + +
Sbjct: 504 TTNEDEFLGDKTGN--RRWLPVE----VGKMDVEGIKKDVIQL------WA-EAREVFNK 550
Query: 669 KGLDVDIPEVCLKAKEE-ERQG---TDTYQAWIDD---CCDIGENLWE--ESHSLAKSYS 719
G+ + E E + + W+D+ + S + +
Sbjct: 551 TGIQFEEAEQLANQIHEKYFIKDAWQEIIERWLDEPDLMTRQKPRARQFLRSADILR--- 607
Query: 720 EYREQELNYDRKRISTRT---VTLNLKQKGFIGGIKREKIE 757
+ LN + K IS R + L+ F ++R +
Sbjct: 608 ----EALNLEPKNISRREQMRMGHVLQNCNFKQVLRRVNGK 644
>gi|254436894|ref|ZP_05050388.1| hypothetical protein OA307_1764 [Octadecabacter antarcticus 307]
gi|198252340|gb|EDY76654.1| hypothetical protein OA307_1764 [Octadecabacter antarcticus 307]
Length = 668
Score = 56.7 bits (135), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/171 (16%), Positives = 57/171 (33%), Gaps = 21/171 (12%)
Query: 469 FLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQR---FIHIRGVG-GSGKSTLMNLIKYA 524
F + + E+ + F + L N+ Q+ + + G+GKS + + +
Sbjct: 245 FDEFLRFVIPVEQDRNMFLDWLAWQL--QNEHQKPKWAVMLYSQNQGTGKSVVAEVCEAL 302
Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN-ENDEINAAKIKQMTG 583
FG ++ E + +VI+ E + + A IK +
Sbjct: 303 FGQANATRCSVEQLLARFNKEILQHK----------MVIVEEVSIQKGSAKANGIKTLIT 352
Query: 584 GDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK 634
+T G ++ P + + N D RR+ ++ FD
Sbjct: 353 DPTVTMEAK-GAPSTKEPILCSFILTTNHLPTWLEESD---RRFFIMNFDH 399
>gi|317152198|ref|YP_004120246.1| hypothetical protein Daes_0479 [Desulfovibrio aespoeensis Aspo-2]
gi|316942449|gb|ADU61500.1| hypothetical protein Daes_0479 [Desulfovibrio aespoeensis Aspo-2]
Length = 493
Score = 56.7 bits (135), Expect = 2e-05, Method: Composition-based stats.
Identities = 44/337 (13%), Positives = 88/337 (26%), Gaps = 40/337 (11%)
Query: 435 ILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY--FESEEVMDYFTRCVGM 492
+ D G K K K Y E + + +EE Y
Sbjct: 113 VFDPR-GSKSKYAKRFYNLWPGYAITPEKGDCSLIIAHLRDIWCNGNEEQFTYLITWFAH 171
Query: 493 AL-LGGNKAQRFIHIRGVGGSGKSTLMN-LIKYAFGNQYVINAEASDIMQNRPPEAGKAN 550
K + ++G +GKST+ + ++ G Y ++
Sbjct: 172 MFQYPWEKPNVALVVKGGKAAGKSTVFDGILLPILGTLYSKMTHQEQLVGKFNRHT---- 227
Query: 551 PSLIRLMGSRIVIISETN-ENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609
+ +++ E D+ +K M + A + + F+
Sbjct: 228 ------LYKLLLVAEEAFWAGDKSAEGPLKAMITDKPLQAEPKGVDAFDTYTYYRIAFVS 281
Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISK 669
+ D+ RR+ I RD + L + F+ + +
Sbjct: 282 NETRVVPATKDE---RRFFAIRVSSD-KMRDVGYFNALWKQIENGGVAAFMDYLMTWEVD 337
Query: 670 GLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGEN-------LWEESHSLAKSYSEYR 722
V P E+ + ++ W + E+ + + Y +
Sbjct: 338 RNLVFSPPRTDVLTEDILENLSAFERWAFEFLHADEDDDLIEWDAPVTTFDIYDHYKRWL 397
Query: 723 EQELNYD----RKRIST---------RTVTLNLKQKG 746
++ R I T R L + G
Sbjct: 398 KEAKELGVYVSRAEIGTQTRMTQEFKRLFGFTLAKAG 434
>gi|211731774|gb|ACJ10104.1| predicted P-loop ATPase [Bacteriophage APSE-7]
Length = 654
Score = 56.7 bits (135), Expect = 2e-05, Method: Composition-based stats.
Identities = 88/573 (15%), Positives = 184/573 (32%), Gaps = 91/573 (15%)
Query: 206 TNREITAFLSCFGEEFYNGSHDEWIPVV--MAVHHETRGSSKGKEIARRWSKQGSTYDEE 263
T ++ + L ++ W+ + +A +T + K + WS + D E
Sbjct: 135 TFEDLRSALWYPKILNQAENYPSWVDMGNRLAWFKDTHFEDEAKTMWLDWSSAAAKGDIE 194
Query: 264 NFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGH 323
KW + G SL G + P A R K + +
Sbjct: 195 AAEAKWAELRADRTG-----YQAIFSLAQKAGWVNPG---AERL-----KTAVATVDEFD 241
Query: 324 FLYTADTKAW--YKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSK 381
L + W +K++K + I + + A + V ++ +E +K
Sbjct: 242 DLTNTENSKWPTFKRNKTSGQIEATIDNAAKAVMYADFVGVEIRFDTFRDEIMFAPVGTK 301
Query: 382 SPRFWFNTDY--RRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSS-SRFLGEQDGILDL 438
+ + + DY R +E+ + + + + + DS+
Sbjct: 302 EWQTFTDADYSRLRITMEKRGFRAVGRELIRDVVLLAAVENPFDSAMEWL---------- 351
Query: 439 ETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEE------VMDYFTRCV-G 491
+E + + +E+ V Y + G
Sbjct: 352 --------------------KSLEWDGIPRIETFYHTHLGTEDTTYTRAVSRYMWTALAG 391
Query: 492 MALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANP 551
L G KA + G GSGKS+ ++ + + + E
Sbjct: 392 RVLKPGIKADMVPILVGAQGSGKSS----------GVAALSPDPTFFTEISFAEKDD--- 438
Query: 552 SLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARL---NYGNTYSESPASFTPFI 608
L R M R +++E +E +N +++ + T + ++ P
Sbjct: 439 DLARKM--RGCLVAEISELRGLNTKELESIKAFVTRTHEKWIPKFKEFATQFPRRSLSIG 496
Query: 609 VPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLK-GVKAYI 667
N+ F+ + RR++ + + D +K + EA++ F + G++
Sbjct: 497 TTNEDEFLGDKTGN--RRWLPVE----VGKMDVEGIKKDVIQLWAEAREVFNETGIQFQE 550
Query: 668 SKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELN 727
++ L + E K+ ++ + W+D+ D+ + +S RE LN
Sbjct: 551 AEQLANQVHEKYFI-KDAWQE---IIERWLDEP-DLMTGQKPRARQFLRSADILRE-ALN 604
Query: 728 YDRKRISTRT---VTLNLKQKGFIGGIKREKIE 757
+ K IS R + L+ F ++R +
Sbjct: 605 LEPKNISRREQMRMGHVLQNCNFKQVLRRVDGK 637
>gi|145354403|ref|XP_001421475.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581712|gb|ABO99768.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 724
Score = 56.7 bits (135), Expect = 2e-05, Method: Composition-based stats.
Identities = 57/361 (15%), Positives = 110/361 (30%), Gaps = 49/361 (13%)
Query: 420 DLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFES 479
D LD + + +L G V+ + + FL+L+
Sbjct: 356 DTLDVVPK--NCSNKTYNLWRGYPVEGIPS---------ELGKEGDVKPFLELLLVLCGG 404
Query: 480 EE-VMDYFTRCVGMALLGGNKAQRF--IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEAS 536
E ++Y L + + + RGV G+GK T ++L+ G + A+
Sbjct: 405 SENALEYALNWFA-CLFQRPEEKPITSLVFRGVQGTGKGTFLHLLHALMGKTFHETADP- 462
Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNE-NDEINAAKIKQMTGGDCMTARLNYGN 595
+ AN + G + + ++E +E ++ +K M T +
Sbjct: 463 ----KKDIFGTHAN----MIEGKKCLALNEADECIMKMYRKLLKSMLTDTSFTINPKHVQ 514
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
Y F + + D RR++V+ N F ++ Y +
Sbjct: 515 LYVIMNLVGFLFFSNDDYPVFLEMSD---RRFVVMEPLLTHLNDQTGFLKEFRDVYIKDL 571
Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLK--AKEEE----RQGTDTYQAWIDDCCDIGE---- 705
+ L+ + ++ GLD+ + + R + W + C E
Sbjct: 572 RN--LRAIYDHLM-GLDLSTFDYVKDRPTTDAYSEMKRGCMPKFTRWF-EHCVTVEFPEK 627
Query: 706 --NLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSK 763
+ + Y + R + S V LK F K +I
Sbjct: 628 WVGNKIRNSDIFIEYQTWLPAA---TRGQDSATRVGNKLKD--FFKKEKGHRIPMREDHL 682
Query: 764 R 764
R
Sbjct: 683 R 683
>gi|254417833|ref|ZP_05031557.1| Bifunctional DNA primase/polymerase, N-terminal family
[Brevundimonas sp. BAL3]
gi|196184010|gb|EDX78986.1| Bifunctional DNA primase/polymerase, N-terminal family
[Brevundimonas sp. BAL3]
Length = 590
Score = 56.7 bits (135), Expect = 2e-05, Method: Composition-based stats.
Identities = 37/180 (20%), Positives = 50/180 (27%), Gaps = 39/180 (21%)
Query: 17 GFKLIPLRLGDKRPQR---------------LGKWEEQ---LLSSEKIDKLP-----ACG 53
G + PL DKRP L WE + + D+ P
Sbjct: 14 GIAVFPLMPRDKRPYGGTPGLHGATKDPALVLAWWEGRKALPPKPDATDRRPVFAGSMAN 73
Query: 54 FGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGI 113
G G + DID D E HG V Q
Sbjct: 74 IGIATGQISGF-WVLDIDGPD---GAAALAALEAQHGPLPVTAEQSTGKGRHILFAWPVA 129
Query: 114 K-------KKKTTESTQGHLDILGCGQYFVA-YNIHPKTKKEYTWT--TPPHRFKVEDTP 163
+ ++ G +D+ G G Y VA +IHP + + Y W P P
Sbjct: 130 GEIGDRTVRNSASKIGPG-IDVRGDGGYIVAAPSIHP-SGRPYEWAPGRGPVDVGFAPAP 187
>gi|281419611|ref|ZP_06250619.1| Bifunctional DNA primase/polymerase [Clostridium thermocellum JW20]
gi|281406743|gb|EFB37013.1| Bifunctional DNA primase/polymerase [Clostridium thermocellum JW20]
Length = 268
Score = 56.7 bits (135), Expect = 2e-05, Method: Composition-based stats.
Identities = 47/254 (18%), Positives = 73/254 (28%), Gaps = 34/254 (13%)
Query: 4 MQWKEQAKQAIHNGFKLIPLR-----------------LGDKRPQRLGKWEEQLLSSEKI 46
+ + A + +IPL K P G ++ E+I
Sbjct: 3 VTMMDAALKYAEANIPVIPLHWICEDGSCSCKAGRNCDSKGKHPLYTGWYKNSTSDIEQI 62
Query: 47 DKL----PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKI 102
K P G G L D+D ++T + + T L T G
Sbjct: 63 RKWWTKTPNANIGIPTGAKSDWLV-LDVDDGGDETISALESTHGKLPDTVTAVTGS---G 118
Query: 103 LIPFRMNKEGIKKKKTTESTQGHLDILGCGQ-YFVAYNIHPKTKKEYTWTT--PPHRFKV 159
+ + LD G VA +IH + +Y W P +
Sbjct: 119 GWHYVFKYPKGRSIPNKTKFAPGLDTRSTGGLIVVAPSIHV-SGNQYQWLEGHSPFDRTL 177
Query: 160 EDTP---LLSEEDVEYLFKFFQEITVPL-VKDKKSIIPSKTWTNN-NNRQYTNREITAFL 214
+ P L E VE L F+ ++ +K+ + R T I A L
Sbjct: 178 AEAPAWLLKLMERVEVLLTPFEGSSIAAEIKEGSRNSTLTSLAGTMRARGMTEESIYAAL 237
Query: 215 SCFGEEFYNGSHDE 228
N + DE
Sbjct: 238 LAENNARCNPTLDE 251
>gi|240142756|ref|YP_002967269.1| hypothetical protein MexAM1_META2p1160 [Methylobacterium extorquens
AM1]
gi|240012703|gb|ACS43928.1| Hypothetical protein MexAM1_META2p1160 [Methylobacterium extorquens
AM1]
Length = 1370
Score = 56.7 bits (135), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/192 (14%), Positives = 64/192 (33%), Gaps = 23/192 (11%)
Query: 10 AKQAIHNGFKLIPL-RLGDKRPQR---LGKWEEQLLSSEK------IDKLPACGFGFVCG 59
A++ NG+ P R GD++P + +W E+ + + + A V
Sbjct: 71 AQRCWENGWVTFPQQRDGDRKPTKGVTYKQWSERAQTLREVIDMTCLRDAAAQNVATVTS 130
Query: 60 VGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVR--IGQKPKILIPFRMNKEGIKKK- 116
+ ++ D+D ++ + + G P +R + K + + +
Sbjct: 131 AQNR-VFVVDVDVQNVAITDAIIRLARRMLGVPFIREYTQSRGKASLIYSTDPANDPVAL 189
Query: 117 --------KTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTT-PPHRFKVEDTPLLSE 167
+ + T ++IL F H KT + + P R + +++
Sbjct: 190 KRSYPVLSRDGKPTSQAVEILSNNAAFTILGRHWKTGSSFQYRGLHPLRDRPTAAASVTQ 249
Query: 168 EDVEYLFKFFQE 179
+ + E
Sbjct: 250 TQLRAFLERVSE 261
>gi|157311092|ref|YP_001469087.1| gp088 [Lactococcus phage KSY1]
gi|108861432|gb|ABG21631.1| gp088 [Lactococcus phage KSY1]
Length = 445
Score = 56.7 bits (135), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/152 (18%), Positives = 49/152 (32%), Gaps = 17/152 (11%)
Query: 163 PLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFY 222
P + E Y+ Q ++ V D I K ++ + ++ L
Sbjct: 27 PAVGE---PYITDEKQGLSPYRVSDFAKIRVKKEIKQSSENKRVGMDLIPLLEVIDPN-- 81
Query: 223 NGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEI--GDT 280
+ + +W+ V MA+ E E WS++ Y KWD+F + G T
Sbjct: 82 DLEYHDWVKVGMALKQE----GYQFETWDTWSQRDVRYKSSEMQDKWDSFQTGQGLSGAT 137
Query: 281 A------KKRSTFTSLFYHHGKLIPKGLLASR 306
+ + + K I L R
Sbjct: 138 IIMMAKERGWEPPKAKGSNKDKRIQSEELTER 169
>gi|302385773|ref|YP_003821595.1| Primase 2 [Clostridium saccharolyticum WM1]
gi|302196401|gb|ADL03972.1| Primase 2 [Clostridium saccharolyticum WM1]
Length = 735
Score = 56.7 bits (135), Expect = 2e-05, Method: Composition-based stats.
Identities = 16/68 (23%), Positives = 25/68 (36%), Gaps = 6/68 (8%)
Query: 205 YTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEEN 264
+ ++ L+ S+ +WI V MA+ HE ++ RWS Y
Sbjct: 2 DSTYDLMEVLNHIDPS--ELSYQDWINVGMALQHE----GYSVDVWDRWSMNDRRYHAGE 55
Query: 265 FNYKWDTF 272
KW F
Sbjct: 56 CEKKWRGF 63
>gi|326331498|ref|ZP_08197788.1| putative prophage Lp4 protein 7, DNA replication [Nocardioidaceae
bacterium Broad-1]
gi|325950754|gb|EGD42804.1| putative prophage Lp4 protein 7, DNA replication [Nocardioidaceae
bacterium Broad-1]
Length = 304
Score = 56.3 bits (134), Expect = 2e-05, Method: Composition-based stats.
Identities = 34/217 (15%), Positives = 59/217 (27%), Gaps = 21/217 (9%)
Query: 7 KEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKL----PACGFGFVCGVGE 62
K+ A + P G K P L +++ +S ++ + P G G
Sbjct: 26 KDAAVALATTRIPVFPCVPGGKEPLTLRGFKDASISIRQVQRWWQRHPDANIGIPTGAAS 85
Query: 63 QPLYAFDIDSK-DEKTANTFKDTFEILHGTPIVRIGQKPKILIP--FRMNKEGIKKKKTT 119
L A D+D D F + + P + FR + ++
Sbjct: 86 G-LAAVDVDVHGDRTGFAAFDRAGRAGLVDRWSWLVRTPSGGLHAYFRPIDPEM---RSW 141
Query: 120 ESTQGHLDILGCGQYFVAYNI----HPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFK 175
HLD G G Y +A T + Y L + +
Sbjct: 142 SLPGQHLDFRGDGGYVIAPPSRISNSDATSRAYQ----VIAVAQHQARPLDSDALRRFLD 197
Query: 176 FFQEITVPLVKDKKSIIPSKT--WTNNNNRQYTNREI 210
+ + P P + W N+ +
Sbjct: 198 PPRAVRPPAALTLGDARPDRLAHWVATRPEGARNQSL 234
>gi|9633552|ref|NP_050964.1| hypothetical protein APSE-1_03 [Acyrthosiphon pisum bacteriophage
APSE-1]
gi|6118000|gb|AAF03948.1|AF157835_3 P3 [Endosymbiont phage APSE-1]
Length = 752
Score = 56.3 bits (134), Expect = 2e-05, Method: Composition-based stats.
Identities = 88/573 (15%), Positives = 185/573 (32%), Gaps = 90/573 (15%)
Query: 206 TNREITAFLSCFGEEFYNGSHDEWIPVV--MAVHHETRGSSKGKEIARRWSKQGSTYDEE 263
T ++ + L ++ W+ + +A +TR + K + WS + D E
Sbjct: 232 TFEDLRSALWYPKILNRAENYPSWVDMGNRLAWFKDTRFEDEAKTMWLDWSSAAAKGDIE 291
Query: 264 NFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGH 323
KW + G SL G + P A R A+ ++
Sbjct: 292 AAEAKWAELRADRTG-----YQAIFSLAQKAGWVNPG---AERLK----TAVATVDAFDD 339
Query: 324 FLYTADTKAW--YKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSK 381
+ W +K++K + I + + A + V ++ +E +K
Sbjct: 340 LTDPTENSKWPTFKRNKTSGQIEATIDNAAKAVMCANFVGVEIRFDTFRDEIMFAPVGTK 399
Query: 382 SPRFWFNTDY--RRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSS-SRFLGEQDGILDL 438
+ + + DY R +E+ + + + + + DS+
Sbjct: 400 EWQTFTDADYSRLRITMEKRGFRAVGRELIRDVVLLAAVENPFDSAMEWL---------- 449
Query: 439 ETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEE------VMDYFTRCV-G 491
+E + + +E+ V Y + G
Sbjct: 450 --------------------KSLEWDGIPRIETFYHTHLGTEDTAYTRAVSRYMWTALAG 489
Query: 492 MALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANP 551
L G KA + G GSGKS+ ++ + + + E
Sbjct: 490 RVLKPGIKADMVPILVGAQGSGKSS----------GVAALSPDPTFFTEISFAEKDD--- 536
Query: 552 SLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARL---NYGNTYSESPASFTPFI 608
L R M R +++E +E +N +++ + T + ++ P
Sbjct: 537 DLARKM--RGCLVAEISELRGLNTKELESIKAFVTRTHEKWIPKFKEFATQFPRRSLSIG 594
Query: 609 VPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLK-GVKAYI 667
N+ F+ + RR++ + + D +K + EA++ F + G++
Sbjct: 595 TTNEDEFLGDKTGN--RRWLPV----AVGKMDVEGIKKDVIQLWAEAREVFNETGIQFQE 648
Query: 668 SKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELN 727
++ L + E K+ ++ + W+D+ D+ + +S RE LN
Sbjct: 649 AEQLANQVHEKYFI-KDAWQE---IIERWLDEP-DLMTGQKPRARQFLRSADILRE-ALN 702
Query: 728 YDRKRISTRT---VTLNLKQKGFIGGIKREKIE 757
+ K IS R + L+ F ++R +
Sbjct: 703 LEPKNISRREQMRMGHVLQNCNFKQVLRRVDGK 735
>gi|60682929|ref|YP_213073.1| hypothetical protein BF3469 [Bacteroides fragilis NCTC 9343]
gi|60494363|emb|CAH09159.1| conserved hypothetical protein [Bacteroides fragilis NCTC 9343]
Length = 719
Score = 56.3 bits (134), Expect = 2e-05, Method: Composition-based stats.
Identities = 44/192 (22%), Positives = 68/192 (35%), Gaps = 25/192 (13%)
Query: 441 GQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKA 500
G K +I K T QEF E + V AL G
Sbjct: 405 GNARWDRKTDHIRKLADT---IQAEDQEFWR--------EGFRRWIVAMVASALRPGKAN 453
Query: 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSR 560
Q + + G G GKST I++ R AN + L+ +R
Sbjct: 454 QEALVLHGAQGKGKST---WIRHLL--------PPELAEYYRNGMIDPANKDDLLLLSTR 502
Query: 561 IVIISETNENDE-INAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNP 619
++I E E + + A++K++ G + +T R Y P + N F++
Sbjct: 503 LLINMEEFEGVKTGDIAELKRIIGQENVTIRKVYDTQAQLYPRRASFIGSTNNMQFLK-- 560
Query: 620 DDAWWRRYIVIP 631
D RR++VIP
Sbjct: 561 DYGGNRRFLVIP 572
>gi|253566060|ref|ZP_04843514.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
gi|251945164|gb|EES85602.1| conserved hypothetical protein [Bacteroides sp. 3_2_5]
gi|301164394|emb|CBW23952.1| conserved hypothetical protein [Bacteroides fragilis 638R]
Length = 719
Score = 56.3 bits (134), Expect = 2e-05, Method: Composition-based stats.
Identities = 44/192 (22%), Positives = 68/192 (35%), Gaps = 25/192 (13%)
Query: 441 GQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKA 500
G K +I K T QEF E + V AL G
Sbjct: 405 GNARWDRKTDHIRKLADT---IQAEDQEFWR--------EGFRRWIVAMVASALRPGKAN 453
Query: 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSR 560
Q + + G G GKST I++ R AN + L+ +R
Sbjct: 454 QEALVLHGAQGKGKST---WIRHLL--------PPELAEYYRNGMIDPANKDDLLLLSTR 502
Query: 561 IVIISETNENDE-INAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNP 619
++I E E + + A++K++ G + +T R Y P + N F++
Sbjct: 503 LLINMEEFEGVKTGDIAELKRIIGQENVTIRKVYDTQAQLYPRRASFIGSTNNMQFLK-- 560
Query: 620 DDAWWRRYIVIP 631
D RR++VIP
Sbjct: 561 DYGGNRRFLVIP 572
>gi|53714955|ref|YP_100947.1| hypothetical protein BF3670 [Bacteroides fragilis YCH46]
gi|52217820|dbj|BAD50413.1| conserved hypothetical protein [Bacteroides fragilis YCH46]
Length = 719
Score = 56.3 bits (134), Expect = 2e-05, Method: Composition-based stats.
Identities = 44/192 (22%), Positives = 68/192 (35%), Gaps = 25/192 (13%)
Query: 441 GQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKA 500
G K +I K T QEF E + V AL G
Sbjct: 405 GNARWDRKTDHIRKLADT---IQAEDQEFWR--------EGFRRWIVAMVASALRPGKAN 453
Query: 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSR 560
Q + + G G GKST I++ R AN + L+ +R
Sbjct: 454 QEALVLHGAQGKGKST---WIRHLL--------PPELAEYYRNGMIDPANKDDLLLLSTR 502
Query: 561 IVIISETNENDE-INAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNP 619
++I E E + + A++K++ G + +T R Y P + N F++
Sbjct: 503 LLINMEEFEGVKTGDIAELKRIIGQENVTIRKVYDTQAQLYPRRASFIGSTNNMQFLK-- 560
Query: 620 DDAWWRRYIVIP 631
D RR++VIP
Sbjct: 561 DYGGNRRFLVIP 572
>gi|262383670|ref|ZP_06076806.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
gi|262294568|gb|EEY82500.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
Length = 395
Score = 56.3 bits (134), Expect = 2e-05, Method: Composition-based stats.
Identities = 29/177 (16%), Positives = 56/177 (31%), Gaps = 29/177 (16%)
Query: 483 MDYFTRCVGMALLGGNKAQRFIHIR---GVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539
MDY Q+ + +GKST +N +K F + +
Sbjct: 108 MDYLQLLYLY------PIQKLPILLLVSEERNTGKSTFLNFLKAIF--------QNNVTF 153
Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599
+ N G ++++ E N ++ ++K ++ + E
Sbjct: 154 NTNEDFRSQFNSDWA---GKLLIMVDEVLLNRREDSERLKNLSTTLSYKVEAKGKDR-DE 209
Query: 600 SPASFTPFIVPN--KHLFVRNPDD-AWWRRYIVIPFDKPIANRDASFAQKLETKYTL 653
+ N + + + +W R IV P+ N D F QKL+ +
Sbjct: 210 IGFFAKFVLCSNNEHLPVIIDAGETRYWVRKIV-----PLQNDDTDFLQKLKAEIPA 261
>gi|226363434|ref|YP_002781216.1| hypothetical protein ROP_40240 [Rhodococcus opacus B4]
gi|226241923|dbj|BAH52271.1| hypothetical protein [Rhodococcus opacus B4]
Length = 904
Score = 56.3 bits (134), Expect = 2e-05, Method: Composition-based stats.
Identities = 35/230 (15%), Positives = 68/230 (29%), Gaps = 21/230 (9%)
Query: 6 WKEQAKQAIHNGFK-LIPLR-LGDKRPQRLGK--WEEQLLSSEKIDKL----PACGFGFV 57
+ + A + + G++ ++P + G K P G +E S + PA
Sbjct: 14 YADGATELWNAGWRGVLPTKRPGTKWPIPEGYTGYEGVYPSYADLMAWTEDKPASNIAL- 72
Query: 58 CGVGEQPLYAFDIDSKDEK-TANTFKDTFEILHGTPIVRIGQKP----KILIPFRMNKEG 112
+ + D+D+ D+K A TF E+ P I + F + +
Sbjct: 73 --RMPKNIIGIDVDAYDKKQGAVTFARALELWGPLPDTWISTSRNDGVSGIRFFTIPEGT 130
Query: 113 IKKKKTTESTQGHLDILG--CGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDT---PLLSE 167
+ ++I+ VA ++HP T Y W P E P
Sbjct: 131 ALRTIIELDGTKDIEIVQYFHRYAIVAPSVHPLTSSTYRWVMPDGTDAPETVVPEPHELP 190
Query: 168 EDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCF 217
+ + V ++ + + L+
Sbjct: 191 TLPDRWLTALEAPIVDTLQPVDVQAALRDMPGGQMDLRVTDRLGHALADL 240
>gi|269837505|ref|YP_003319733.1| Bifunctional DNA primase/polymerase [Sphaerobacter thermophilus DSM
20745]
gi|269786768|gb|ACZ38911.1| Bifunctional DNA primase/polymerase [Sphaerobacter thermophilus DSM
20745]
Length = 458
Score = 56.3 bits (134), Expect = 2e-05, Method: Composition-based stats.
Identities = 37/161 (22%), Positives = 50/161 (31%), Gaps = 19/161 (11%)
Query: 1 MPVMQWKEQAKQAIHNGFKLIPLRLGDKRP-----QRLGKWEEQLLSSEKIDKLPACGFG 55
+P A G+ + L K P + E P G
Sbjct: 34 LPTTGMVRHALAYAARGWPVFALAPRAKVPLARSRGHHDATTDARAVREWWALWPDANIG 93
Query: 56 FVCGVGEQPLYAFDIDSK---DEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEG 112
G G L D+D + D A + +E L P VR G L + G
Sbjct: 94 IALGGGR--LVVLDVDRRHGGDATLAA-VEREYEPLPPAPAVRTGD---GLHLYYAA--G 145
Query: 113 IKKKKTTESTQGHLDILGCGQYFVAYN-IHPKTKKEYTWTT 152
+ T G L++ G G Y VA IHP + Y W
Sbjct: 146 GRPVPTRVLGPG-LELRGDGAYVVAPPSIHP-SGTRYQWAD 184
>gi|265766808|ref|ZP_06094637.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
gi|263253185|gb|EEZ24661.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
Length = 719
Score = 56.3 bits (134), Expect = 2e-05, Method: Composition-based stats.
Identities = 44/192 (22%), Positives = 68/192 (35%), Gaps = 25/192 (13%)
Query: 441 GQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKA 500
G K +I K T QEF E + V AL G
Sbjct: 405 GNARWDRKTDHIRKLADT---IQAEDQEFWR--------EGFRRWIVAMVASALRPGKAN 453
Query: 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSR 560
Q + + G G GKST I++ R AN + L+ +R
Sbjct: 454 QEALVLHGAQGKGKST---WIRHLL--------PPELAEYYRNGMIDPANKDDLLLLSTR 502
Query: 561 IVIISETNENDE-INAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNP 619
++I E E + + A++K++ G + +T R Y P + N F++
Sbjct: 503 LLINMEEFEGVKTGDIAELKRIIGQENVTIRKVYDTQAQLYPRRASFIGSTNNMQFLK-- 560
Query: 620 DDAWWRRYIVIP 631
D RR++VIP
Sbjct: 561 DYGGNRRFLVIP 572
>gi|211731751|gb|ACJ10090.1| predicted P-loop ATPase [Bacteriophage APSE-4]
Length = 661
Score = 55.9 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 83/576 (14%), Positives = 178/576 (30%), Gaps = 96/576 (16%)
Query: 206 TNREITAFLSCFGEEFYNGSHDEWIPVV--MAVHHETRGSSKGKEIARRWSKQGSTYDEE 263
T ++ + L ++ W+ + +A +TR + K + WS + D E
Sbjct: 141 TFEDLRSALWYPKILNQAENYPSWVDMGNRLAWFKDTRFEDEAKTMWLDWSSAAAKGDIE 200
Query: 264 NFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGH 323
KW + G SL G + P A R A+ ++ +
Sbjct: 201 AAEAKWAELRADRTG-----YQAIFSLAQKAGWVNPG---AERLK----TAVATVDEFDD 248
Query: 324 FLYTADTKAW--YKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSK 381
+ W +K++K + I + + + A + V ++ +E +
Sbjct: 249 LTDPPENSKWPTFKRNKTSGQIEATIDNAVKAVMCADFVGVEIRFDAFRDEIMFAPVGTG 308
Query: 382 SPRFWFNTDY--RRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSS-SRFLGEQDGILDL 438
+ + + DY R +E+ + + + + + DS+
Sbjct: 309 EWQTFTDADYSRLRITMEKRGFKAVGRELIRDVVLLAAVENPFDSAMEWL---------- 358
Query: 439 ETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEE------VMDYFTRCV-G 491
+E + +F +E+ V Y + G
Sbjct: 359 --------------------KSLEWDGIPRIEKFYHTHFCTEDTTYTRAVSRYMWTALAG 398
Query: 492 MALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANP 551
L G KA + G G GKS+ ++ + + + E
Sbjct: 399 RVLKPGIKANMVPILVGAQGCGKSS----------GVAALSPDPTFFTEISFAEKDD--- 445
Query: 552 SLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARL---NYGNTYSESPASFTPFI 608
L R + R +++E +E +N +++ + T + ++ P
Sbjct: 446 DLARKI--RGCLVAEISELRGLNTKELESIKAFVTRTHEKWIPKFKEFATQFPRRSLSIG 503
Query: 609 VPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYIS 668
N+ F+ + RR++ + + D +K + W + + +
Sbjct: 504 TTNQDEFLGDKTGN--RRWLPVE----VGKMDVEGIKKDVIQL------WA-EAREVFNK 550
Query: 669 KGLDVDIPEVCLKAKEE-ERQG---TDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQ 724
G+ + E E + + W+D+ D+ + +S RE
Sbjct: 551 TGIQFEEAEQLANQVHEKYFIKDAWQEIIERWLDEP-DLMTGQKPRARQFLRSADILRE- 608
Query: 725 ELNYDRKRISTRT---VTLNLKQKGFIGGIKREKIE 757
LN + K IS R + L+ F ++R +
Sbjct: 609 ALNLEPKNISRREQMRIGHVLQNCNFKQVLRRVDGK 644
>gi|330939433|gb|EGH42789.1| bifunctional DNA primase/polymerase [Pseudomonas syringae pv. pisi
str. 1704B]
Length = 897
Score = 55.9 bits (133), Expect = 2e-05, Method: Composition-based stats.
Identities = 49/293 (16%), Positives = 94/293 (32%), Gaps = 31/293 (10%)
Query: 459 PFVEGEPSQEFLDLVSGYFESEEVMD-YFTRCVGMAL--LGGNKAQRFIHIRGVGGSGKS 515
P + L+S +E + TR + L LG + + GSGKS
Sbjct: 552 PVNDDAACANLRWLISFLCNHDEAAALWLTRWLAYPLQHLGAKMDTAVLMHSTMEGSGKS 611
Query: 516 T-LMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISET-NENDEI 573
+ +G QY + + N + + E + +
Sbjct: 612 LLFADTFGALYG-QYAATVGQTQLESNFNAWQSR----------KMWAVFEEVVSRDQRY 660
Query: 574 NA-AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLF--VRNPDDAWWRRYIVI 630
N KIK + G + + N + E+ + N+ L + + D RR +V+
Sbjct: 661 NQVGKIKHLVTGKTVRMESKFINGWEEA-NHMNAVFLSNEILPWPISDSD----RRMLVM 715
Query: 631 -PFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQG 689
P + R + ++LE W L+ ++ + R G
Sbjct: 716 WPMETLPVARQKAIGRELENGGVAALYGWLLRVDLGDFNERTRPPSTASRERLVALSRAG 775
Query: 690 TDTYQAWIDDCCDIGENLW--EESHSLAKSYSEYREQELNYDRKRISTRTVTL 740
T+ + ++G LW S L + E+ ++ + +S +L
Sbjct: 776 WQTFLH-LWRYGELGRGLWGACLSTDLYALFIEWCQRNKEH---VMSQTKFSL 824
Score = 55.9 bits (133), Expect = 3e-05, Method: Composition-based stats.
Identities = 41/215 (19%), Positives = 67/215 (31%), Gaps = 64/215 (29%)
Query: 17 GFKLIPLRLGDKRPQRLGKWE------EQLLSSEKIDKLPACGFGFVCGVGE-------- 62
F L+P++ G+K P+ G + + + K P G V G
Sbjct: 20 NFALVPIQPGEKGPKGRGWNQPGKYIVDPAKAEAFWTKNPNHNLGVVLGPSRVCSLDVDD 79
Query: 63 --------QPLYAFDIDSKD---EKTAN---TFKDTFEILHGTPIVR-----------IG 97
L D+D+ F+ F++ G + R G
Sbjct: 80 VQWTRFVLYELLGVDLDALALTFPTVVGNPLRFRVLFQVPEGLELTRHSLSWPNENDPDG 139
Query: 98 QKPKILIP----------------FRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIH 141
K K ++ +R + E K+ E G + Q + +IH
Sbjct: 140 SKHKSIMLKANAARDAGDTAREALYRADAENYKRFTVFELRAGLV------QDVLPPSIH 193
Query: 142 PKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKF 176
P T K YTW TPP P+L + + +
Sbjct: 194 PGTGKPYTWRTPP---DASGLPILISDLLNVWNNW 225
>gi|167462159|ref|ZP_02327248.1| RecA-family ATPase [Paenibacillus larvae subsp. larvae BRL-230010]
Length = 768
Score = 55.9 bits (133), Expect = 3e-05, Method: Composition-based stats.
Identities = 30/126 (23%), Positives = 44/126 (34%), Gaps = 18/126 (14%)
Query: 209 EITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGS-TYDEENFNY 267
++ + L + N + EWI V MA+ +E +S WSK+ S Y
Sbjct: 24 DLVSLLEYIDPSYLN--YQEWINVGMALKYEGYTASD----WDDWSKRDSTRYHPGECFK 77
Query: 268 KWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYT 327
KW TF E G T T + +G + R D +N + Y
Sbjct: 78 KWTTF--EGTGTPITGA-TITQMAKDNGWMPRSADREDRELD-WNDEIAGD-------YV 126
Query: 328 ADTKAW 333
K W
Sbjct: 127 VVDKNW 132
>gi|123192617|ref|XP_001282637.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121840302|gb|EAX69707.1| hypothetical protein TVAG_545240 [Trichomonas vaginalis G3]
Length = 269
Score = 55.9 bits (133), Expect = 3e-05, Method: Composition-based stats.
Identities = 44/274 (16%), Positives = 85/274 (31%), Gaps = 29/274 (10%)
Query: 477 FESEEVMDYFTRCVGMALL-GGNKAQRFIHIRGVGGSGKSTLM-NLIKYAF-GNQYVINA 533
E+++V +Y L K + + I G G+GK+T +++ G
Sbjct: 1 METKKVYEYILCWFANILQHPSAKNETALIIIGKQGTGKNTFFTDILCKLLEGYSNPNMT 60
Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEND---EINAAKIKQMTGGDCMTAR 590
+I ++++ +E D +N+ +K +
Sbjct: 61 NLENICGKFNSSIEN----------MKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVE 110
Query: 591 LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETK 650
Y + + + N D RRY+V+ +D + L
Sbjct: 111 RKYKDQRVCENVANFIMVSNNAVPMKLESSD---RRYVVVR-TSEAHMQDTEYFDDLAET 166
Query: 651 YTLEAKKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWE 709
T + + IP + E + Y+ +ID+ +
Sbjct: 167 LTSDFYNHLFSYFMTLDISKFNPRQIPHTEERQTLLEANKS-VYELFIDET----DFECL 221
Query: 710 ESHSLAKSYSEYREQELNYDRKRISTRTVTLNLK 743
+ SL SY +Y ++ Y S RT N+K
Sbjct: 222 DERSLYDSYKQYCQE---YGYMTASKRTFLANVK 252
>gi|304383202|ref|ZP_07365675.1| conserved hypothetical protein [Prevotella marshii DSM 16973]
gi|304335673|gb|EFM01930.1| conserved hypothetical protein [Prevotella marshii DSM 16973]
Length = 396
Score = 55.9 bits (133), Expect = 3e-05, Method: Composition-based stats.
Identities = 31/192 (16%), Positives = 59/192 (30%), Gaps = 25/192 (13%)
Query: 467 QEFLDLVSGYFESE-EV-MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524
L+ F + E+ +DY L K + + +GKST +N +K
Sbjct: 89 PHIESLIHHIFGEQYELGIDYLQLLY---LQPVQKLPILLMVSEERNTGKSTFLNFLKAV 145
Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGG 584
F V D G ++++ E N ++ ++K ++
Sbjct: 146 F-QNNVTFNTNEDFRSQFN----------ADWAGKLLIVVDEVLLNRREDSERLKNLSTT 194
Query: 585 DCMTARLNYGNTYSESPASFTPFIVPNK--HLFVRNPDD-AWWRRYIVIPFDKPIANRDA 641
+ E + N + + + +W R I + N D
Sbjct: 195 LSYKVEAKGKDR-DEISFFAKFVLCSNNELLPVIIDVGETRYWVRKI-----NRLENDDT 248
Query: 642 SFAQKLETKYTL 653
F QKL+ +
Sbjct: 249 DFLQKLKAEIPA 260
>gi|213971964|ref|ZP_03400062.1| hypothetical protein PSPTOT1_0796 [Pseudomonas syringae pv. tomato
T1]
gi|213923279|gb|EEB56876.1| hypothetical protein PSPTOT1_0796 [Pseudomonas syringae pv. tomato
T1]
Length = 393
Score = 55.9 bits (133), Expect = 3e-05, Method: Composition-based stats.
Identities = 49/293 (16%), Positives = 94/293 (32%), Gaps = 31/293 (10%)
Query: 459 PFVEGEPSQEFLDLVSGYFESEEVMD-YFTRCVGMAL--LGGNKAQRFIHIRGVGGSGKS 515
P + L+S +E + TR + L LG + + GSGKS
Sbjct: 48 PVNDDAACANLRWLISFLCNHDEAAALWLTRWLAYPLQHLGAKMDTAVLMHSTMEGSGKS 107
Query: 516 T-LMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISET-NENDEI 573
+ +G QY + + N + + E + +
Sbjct: 108 LLFADTFGALYG-QYAATVGQTQLESNFNAWQSR----------KMWAVFEEVVSRDQRY 156
Query: 574 NA-AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLF--VRNPDDAWWRRYIVI 630
N KIK + G + + N + E+ + N+ L + + D RR +V+
Sbjct: 157 NQVGKIKHLVTGKTVRMESKFINGWEEA-NHMNAVFLSNEILPWPISDSD----RRMLVM 211
Query: 631 -PFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQG 689
P + R + ++LE W L+ ++ + R G
Sbjct: 212 WPMETLPVARQKAIGRELENGGVAALYGWLLRVDLGDFNERTRPPSTASRERLVALSRAG 271
Query: 690 TDTYQAWIDDCCDIGENLW--EESHSLAKSYSEYREQELNYDRKRISTRTVTL 740
T+ + ++G LW S L + E+ ++ + +S +L
Sbjct: 272 WQTFLH-LWRYGELGRGLWGACLSTDLYALFIEWCQRNKEH---VMSQTKFSL 320
>gi|167825274|ref|ZP_02456745.1| hypothetical protein Bpseu9_16513 [Burkholderia pseudomallei 9]
gi|226197848|ref|ZP_03793422.1| primase C 2 (PriCT-2) family [Burkholderia pseudomallei Pakistan 9]
gi|225930036|gb|EEH26049.1| primase C 2 (PriCT-2) family [Burkholderia pseudomallei Pakistan 9]
Length = 949
Score = 55.9 bits (133), Expect = 3e-05, Method: Composition-based stats.
Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 6/65 (9%)
Query: 208 REITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNY 267
L + D W V MAV E +G + WS+ +Y+ ++
Sbjct: 5 ERARVALGYVPPD----DRDTWRQVGMAVKAEF--GEEGFSLWSEWSQGAQSYNAKDARD 58
Query: 268 KWDTF 272
W +F
Sbjct: 59 VWKSF 63
>gi|227544802|ref|ZP_03974851.1| conserved hypothetical protein [Lactobacillus reuteri CF48-3A]
gi|300908952|ref|ZP_07126415.1| conserved hypothetical protein [Lactobacillus reuteri SD2112]
gi|227185235|gb|EEI65306.1| conserved hypothetical protein [Lactobacillus reuteri CF48-3A]
gi|300894359|gb|EFK87717.1| conserved hypothetical protein [Lactobacillus reuteri SD2112]
Length = 978
Score = 55.9 bits (133), Expect = 3e-05, Method: Composition-based stats.
Identities = 40/283 (14%), Positives = 85/283 (30%), Gaps = 36/283 (12%)
Query: 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRL----M 557
R + GV GSGK+ L L+ F + + +P+LI
Sbjct: 641 RAFILYGVPGSGKTVLAKLLCKIFDEPNR---PSRILCSEPNINKVFTDPNLIDANDTKK 697
Query: 558 GSRIVIISETNENDEINA------AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPN 611
G ++ + + N I +T + T + + S + N
Sbjct: 698 GKLVLWFDDFQSDGRSNEIKRNVGTVINAVTSNEAKTGAAKFQQYHDIKLPS-LIVLSTN 756
Query: 612 KHLFVRNPDDAWWRRYIVIPFDKPIANRDASFA-----------QKLETKYTLEAKKWFL 660
+++ R VI K + + D + + +K++ + +
Sbjct: 757 DVPQIKHI--GTVDRIFVIKSSKRLTD-DPNISFSSNIDAWINNKKVQEAFFCIILNTAV 813
Query: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIG--ENLWEESHSLAKSY 718
+SK I + A+ + +A+ ++ + + ++ L Y
Sbjct: 814 D--ILNMSKDEAKSIFDKSNSAQSALSNLNSSIEAFFEEQNITSLYDLVGMQAKKLFDVY 871
Query: 719 SEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWK 761
E E+ Y + R ++ G K + K
Sbjct: 872 LE-GEKNFAY---ATTYRAFCDQIEGLGLNLRRKHFNHKNYQK 910
>gi|213692143|ref|YP_002322729.1| Helicase superfamily 3 [Bifidobacterium longum subsp. infantis ATCC
15697]
gi|213523604|gb|ACJ52351.1| Helicase superfamily 3 [Bifidobacterium longum subsp. infantis ATCC
15697]
gi|320458261|dbj|BAJ68882.1| conserved hypothetical protein [Bifidobacterium longum subsp.
infantis ATCC 15697]
Length = 837
Score = 55.9 bits (133), Expect = 3e-05, Method: Composition-based stats.
Identities = 39/189 (20%), Positives = 63/189 (33%), Gaps = 15/189 (7%)
Query: 486 FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545
R + L + +G GG+GKSTL + G+Q + Q P
Sbjct: 278 LQRSLAAPFLRSHPE-CAYVYQGPGGTGKSTLAKDLMEHLGDQ-ATTMSLDLLAQ---PT 332
Query: 546 AGKANPSLIRLMGSRIVIISETNENDEINAAKIK----QMTGGDCMTARLNYGNTYSESP 601
A A + LM + + + + + +TG +AR N+ P
Sbjct: 333 AMSAENKMGDLMSHLLALSDDYDPTHGRFEKSLPNLKTLLTGLLPFSARRQGENSVDGMP 392
Query: 602 ASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLK 661
S I N HL V +A RR+ IA+ L + + L
Sbjct: 393 QS-VHLITTNYHLPVS-SSEAEQRRFAF----STIASPTTRARHYLPFRRKHGFWPFMLI 446
Query: 662 GVKAYISKG 670
G +++ G
Sbjct: 447 GAITWLTIG 455
>gi|325266444|ref|ZP_08133121.1| conjugal transfer mating pair stabilization protein TraN [Kingella
denitrificans ATCC 33394]
gi|324981887|gb|EGC17522.1| conjugal transfer mating pair stabilization protein TraN [Kingella
denitrificans ATCC 33394]
Length = 1854
Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats.
Identities = 29/229 (12%), Positives = 55/229 (24%), Gaps = 37/229 (16%)
Query: 208 REITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNY 267
E+ L+ + W V A+ E +G + WS+ ++E N
Sbjct: 10 DEVRNALTYLDPN----DRETWWKVGAALKSEFDEGGRG--LWEDWSRSYPKWNERESNA 63
Query: 268 KWDTFDFE--EIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFL 325
+W +F + IG F + A R ++
Sbjct: 64 QWKSFKYGHIHIGTLFHMAKANGFTFSQSYRTPTAEETAHREAE---------------- 107
Query: 326 YTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRF 385
+ + W A N + + P +K P
Sbjct: 108 --------WAVKREVQDAWDKVSRDHAARTANIVWENANTRPADAGFPYLRDKGIADPAV 159
Query: 386 WFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDG 434
N R E+ + + +D++ G
Sbjct: 160 LANARINRFKDEDR-----LVIPMYDRPNHIVNRQAIDANGGKFFLPGG 203
>gi|254441073|ref|ZP_05054566.1| hypothetical protein OA307_488 [Octadecabacter antarcticus 307]
gi|198251151|gb|EDY75466.1| hypothetical protein OA307_488 [Octadecabacter antarcticus 307]
Length = 549
Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats.
Identities = 30/174 (17%), Positives = 57/174 (32%), Gaps = 26/174 (14%)
Query: 469 FLDLVSGYFESEEVMDYFTRCVGMALLG-GNKAQRFIHIRGVG-GSGKSTLMNLIKYAFG 526
F D +S E + + L G K + I + G+GK+TL ++ K FG
Sbjct: 197 FWDFLSYVIPVENERETLINWLAWVLQNEGKKPKWAILLYSQKQGTGKTTLTDVCKALFG 256
Query: 527 NQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN-ENDEINAAKIKQMTGGD 585
+ R + ++ +++VI+ E + +A +IK + D
Sbjct: 257 PANTGKTNGVSKLVGRFNK---------EVLDNKLVIVEEVEVKKGSTDANRIKTLITED 307
Query: 586 CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWW-----RRYIVIPFDK 634
+ + + N W RR+ ++ FD
Sbjct: 308 STMVEAKFM-PSHDQIIHCAFVMTTNHLP--------LWLEEADRRFFILNFDH 352
>gi|302058867|ref|ZP_07250408.1| bifunctional DNA primase/polymerase [Pseudomonas syringae pv.
tomato K40]
Length = 897
Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats.
Identities = 49/293 (16%), Positives = 94/293 (32%), Gaps = 31/293 (10%)
Query: 459 PFVEGEPSQEFLDLVSGYFESEEVMD-YFTRCVGMAL--LGGNKAQRFIHIRGVGGSGKS 515
P + L+S +E + TR + L LG + + GSGKS
Sbjct: 552 PVNDDAACANLRWLISFLCNHDEAAALWLTRWLAYPLQHLGAKMDTAVLMHSTMEGSGKS 611
Query: 516 T-LMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISET-NENDEI 573
+ +G QY + + N + + E + +
Sbjct: 612 LLFADTFGALYG-QYAATVGQTQLESNFNAWQSR----------KMWAVFEEVVSRDQRY 660
Query: 574 NA-AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLF--VRNPDDAWWRRYIVI 630
N KIK + G + + N + E+ + N+ L + + D RR +V+
Sbjct: 661 NQVGKIKHLVTGKTVRMESKFINGWEEA-NHMNAVFLSNEILPWPISDSD----RRMLVM 715
Query: 631 -PFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQG 689
P + R + ++LE W L+ ++ + R G
Sbjct: 716 WPMETLPVARQKAIGRELENGGVAALYGWLLRVDLGDFNERTRPPSTASRERLVALSRAG 775
Query: 690 TDTYQAWIDDCCDIGENLW--EESHSLAKSYSEYREQELNYDRKRISTRTVTL 740
T+ + ++G LW S L + E+ ++ + +S +L
Sbjct: 776 WQTFLH-LWRYGELGRGLWGACLSTDLYALFIEWCQRNKEH---VMSQTKFSL 824
Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats.
Identities = 50/276 (18%), Positives = 78/276 (28%), Gaps = 79/276 (28%)
Query: 17 GFKLIPLRLGDKRPQRLGKWE------EQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDI 70
F L+P++ G+K P+ G + + + K P G V G P +
Sbjct: 20 NFALVPIQPGEKGPKGRGWNQPGKYIVDPAKAEAFWTKNPNHNLGVVLG----PSRVCSL 75
Query: 71 DSKDEKTAN--------------------------TFKDTFEILHGTPIVR--------- 95
D D + F+ F + G + R
Sbjct: 76 DVDDVQWTRVVLYDLLGLDLDALALAFPTVVGNPLRFRILFRVPEGLDLTRHALAWPNEN 135
Query: 96 --IGQKPKILIP----------------FRMNKEGIKKKKTTESTQGHLDILGCGQYFVA 137
G K ++ +R + E K+ E G + Q +
Sbjct: 136 DPDGSIHKSIMLKANAARDAGDTAREALYRADAEKYKRLTVFELRAGLV------QDVLP 189
Query: 138 YNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFF------QEITVPLVKDKKSI 191
+IHP T + YTW TPP P+L + + + + L KD K
Sbjct: 190 PSIHPGTGQPYTWRTPP---DASGLPVLIGDLLNVWNNWDVFKRGAEAACPWLPKDAKPT 246
Query: 192 IPSKTWTNNNNRQYT-NREITAFLSCFGEEFYNGSH 226
K I F +C E SH
Sbjct: 247 AKQKPKPKRAPVAGNRPSVIDEFNNCHDVEEILRSH 282
>gi|313668169|ref|YP_004048453.1| hypothetical protein NLA_8370 [Neisseria lactamica ST-640]
gi|313005631|emb|CBN87071.1| hypothetical protein NLA_8370 [Neisseria lactamica 020-06]
Length = 162
Score = 55.5 bits (132), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/119 (21%), Positives = 37/119 (31%), Gaps = 21/119 (17%)
Query: 208 REITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNY 267
EI A LS G + D WI + AV E G + WS+ G +Y+ +
Sbjct: 5 DEIRAALSHIGAD----DRDMWIRMGEAVKDEI--GEDGFHLWDEWSQTGGSYNARDAKA 58
Query: 268 KWDTFDF------------EEIGDTAKKRSTFTS---LFYHHGKLIPKGLLASRFSDAY 311
W +F + G +K S + K L A R
Sbjct: 59 AWKSFKPGHISIGTLFHHARQNGWRPEKPYVPLSDAEKAQRQAESEAKRLEAERLRQEG 117
>gi|301386003|ref|ZP_07234421.1| bifunctional DNA primase/polymerase [Pseudomonas syringae pv.
tomato Max13]
Length = 811
Score = 55.5 bits (132), Expect = 4e-05, Method: Composition-based stats.
Identities = 49/293 (16%), Positives = 94/293 (32%), Gaps = 31/293 (10%)
Query: 459 PFVEGEPSQEFLDLVSGYFESEEVMD-YFTRCVGMAL--LGGNKAQRFIHIRGVGGSGKS 515
P + L+S +E + TR + L LG + + GSGKS
Sbjct: 466 PVNDDAACANLRWLISFLCNHDEAAALWLTRWLAYPLQHLGAKMDTAVLMHSTMEGSGKS 525
Query: 516 T-LMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISET-NENDEI 573
+ +G QY + + N + + E + +
Sbjct: 526 LLFADTFGALYG-QYAATVGQTQLESNFNAWQSR----------KMWAVFEEVVSRDQRY 574
Query: 574 NA-AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLF--VRNPDDAWWRRYIVI 630
N KIK + G + + N + E+ + N+ L + + D RR +V+
Sbjct: 575 NQVGKIKHLVTGKTVRMESKFINGWEEA-NHMNAVFLSNEILPWPISDSD----RRMLVM 629
Query: 631 -PFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQG 689
P + R + ++LE W L+ ++ + R G
Sbjct: 630 WPMETLPVARQKAIGRELENGGVAALYGWLLRVDLGDFNERTRPPSTASRERLVALSRAG 689
Query: 690 TDTYQAWIDDCCDIGENLW--EESHSLAKSYSEYREQELNYDRKRISTRTVTL 740
T+ + ++G LW S L + E+ ++ + +S +L
Sbjct: 690 WQTFLH-LWRYGELGRGLWGACLSTDLYALFIEWCQRNKEH---VMSQTKFSL 738
Score = 49.0 bits (115), Expect = 0.003, Method: Composition-based stats.
Identities = 29/129 (22%), Positives = 42/129 (32%), Gaps = 16/129 (12%)
Query: 105 PFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPL 164
+R + E K+ E G + Q + +IHP T + YTW TPP P+
Sbjct: 77 LYRADAEKYKRLTVFELRAGLV------QDVLPPSIHPGTGQPYTWRTPP---DASGLPV 127
Query: 165 LSEEDVEYLFKFF------QEITVPLVKDKKSIIPSKTWTNNNNRQYT-NREITAFLSCF 217
L + + + + L KD K K I F +C
Sbjct: 128 LIGDLLNVWNNWDVFKRGAEAACPWLPKDAKPTAKQKPKPKRAPVAGNRPSVIDEFNNCH 187
Query: 218 GEEFYNGSH 226
E SH
Sbjct: 188 DVEEILRSH 196
>gi|260892768|ref|YP_003238865.1| Bifunctional DNA primase/polymerase [Ammonifex degensii KC4]
gi|260864909|gb|ACX52015.1| Bifunctional DNA primase/polymerase [Ammonifex degensii KC4]
Length = 599
Score = 55.5 bits (132), Expect = 4e-05, Method: Composition-based stats.
Identities = 41/190 (21%), Positives = 64/190 (33%), Gaps = 37/190 (19%)
Query: 1 MPVMQWKEQAKQAIHNGFKLIPLR-LG--------------DKRPQRLGKW---EEQLLS 42
M E A G+ +IPL G K P RL W +E+ +
Sbjct: 1 MSAKAALEAALSYFGLGWSVIPLHTPGPAGGCSCGRDCDSPGKHP-RLASWKEFQERRPT 59
Query: 43 SEKI-----DKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIG 97
E++ +K + G V G + D+D +D A + L TP+VR G
Sbjct: 60 EEELREWWGEKWSSANLGLVTGRVSG-VVVVDLDGEDGVRAVRERGG---LPPTPVVRTG 115
Query: 98 QKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFV-AYNIHPKTKKEYTWT--TPP 154
+ + + G +D+ G G V ++HP T + Y W P
Sbjct: 116 K----GWHYYFAYPEVVVPTRAGVLPG-VDVRGDGGLAVLPPSLHP-TGRRYEWARGRSP 169
Query: 155 HRFKVEDTPL 164
+ P
Sbjct: 170 WEVPLAPCPE 179
>gi|68304223|ref|YP_249691.1| helicase/P143 [Chrysodeixis chalcites nucleopolyhedrovirus]
gi|67973052|gb|AAY84018.1| helicase/P143 [Chrysodeixis chalcites nucleopolyhedrovirus]
Length = 1214
Score = 55.5 bits (132), Expect = 4e-05, Method: Composition-based stats.
Identities = 38/213 (17%), Positives = 75/213 (35%), Gaps = 40/213 (18%)
Query: 486 FTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544
G ++ + + + I++ G GSGKS+ L++Y + + +
Sbjct: 898 VMMHFGASMGIPSDYEKCCIYLNGKPGSGKSSFFELLEYIV--VVHKHDSDKYTLSKKDT 955
Query: 545 EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQ---MTGGDCMTARLNYGNTYSESP 601
+A+ + +L +I+E + + K T + + + Y
Sbjct: 956 NEMEADKMISQLY-----VINEMK---VCDDSFFKSTADSTKSNSVCRKFQGSQKYE--- 1004
Query: 602 ASFTPFIVPNKHLFVRNPDDAWWRRYIVI----------PFDK----PIANR----DASF 643
A++ IV NK L + + D R+ VI PF+ I N+ + ++
Sbjct: 1005 ANYKLLIVNNKPLHISDYDKGVRNRFAVIYTDHLFEENLPFNGSIYWHIKNKLYPMEKNY 1064
Query: 644 AQKLETKYTLEAKKWFLKGVKAYISKGLDVDIP 676
+ L + FL V Y D +P
Sbjct: 1065 NEDLAKP-----VRIFLSHVLMYKRNAKDGYVP 1092
>gi|254449344|ref|ZP_05062788.1| conserved hypothetical protein [gamma proteobacterium HTCC5015]
gi|198261048|gb|EDY85349.1| conserved hypothetical protein [gamma proteobacterium HTCC5015]
Length = 891
Score = 55.1 bits (131), Expect = 4e-05, Method: Composition-based stats.
Identities = 43/233 (18%), Positives = 79/233 (33%), Gaps = 25/233 (10%)
Query: 441 GQKVKPTKELYI--------TKSTGTPFVEGEPS----QEFLDLVSGYFESEEVMDYFTR 488
G+ + E + T S P + + E+ D + F + V+
Sbjct: 478 GKVYEHNNEDFFEIGSLAIKTLSQSVPLTINKKASLGRPEWGDALLSAFREQGVIA-LAY 536
Query: 489 CVGMALLGGNKAQR----FIHIRGVGGSGKSTLMNLIKYAFG-NQYVINAEASDIMQNRP 543
+G + Q F+ I G G+GKSTL+ + G + Y + + R
Sbjct: 537 WLGTLFAEQIREQHKSYPFLEIVGEAGAGKSTLIEFLWKLLGRSDYEGFDPSKATLPARS 596
Query: 544 PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR--LNYGNTYSESP 601
+ + + L+ S E + + + ++K G + AR N GN E P
Sbjct: 597 RNFAQVSNLPVVLIESD--RDQEGAKQRQFDWDELKTAYNGRSVRARGVKNGGNDTYEPP 654
Query: 602 ASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLE 654
I N N +A +R + + F + + + Y +E
Sbjct: 655 FRGAIVISQN---AAVNASEAIIQRIVHLTFTRAEQTSQTRASAEFLESYPIE 704
>gi|123203098|ref|XP_001284247.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121845344|gb|EAX71317.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 261
Score = 55.1 bits (131), Expect = 4e-05, Method: Composition-based stats.
Identities = 42/266 (15%), Positives = 79/266 (29%), Gaps = 29/266 (10%)
Query: 485 YFTRCVGMALL-GGNKAQRFIHIRGVGGSGKSTLM-NLIKYAF-GNQYVINAEASDIMQN 541
Y L K + + I G G+GK+T +++ G +I
Sbjct: 1 YILCWFANILQHPSAKNETALIIIGKQGTGKNTFFTDILCKLLEGYSNPNMTNLENICGK 60
Query: 542 RPPEAGKANPSLIRLMGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGNTYS 598
++++ +E D +N+ +K + Y +
Sbjct: 61 FNSSIEN----------MKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRV 110
Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKW 658
+ + N D RRY+V+ +D + L T +
Sbjct: 111 CENVANFIMVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNH 166
Query: 659 FLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKS 717
+ IP + E + Y+ +ID+ + + SL S
Sbjct: 167 LFSYFMTLDISKFNPRQIPHTEERQTLLEANKS-VYELFIDETDFVSLDER----SLYDS 221
Query: 718 YSEYREQELNYDRKRISTRTVTLNLK 743
Y +Y ++ Y S RT N+K
Sbjct: 222 YKQYCQE---YGYMTASKRTFLANVK 244
>gi|260904380|ref|ZP_05912702.1| hypothetical protein BlinB_03562 [Brevibacterium linens BL2]
Length = 310
Score = 55.1 bits (131), Expect = 4e-05, Method: Composition-based stats.
Identities = 22/190 (11%), Positives = 52/190 (27%), Gaps = 11/190 (5%)
Query: 9 QAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKL----PACGFGFVCGVGEQP 64
A++ G + P KRP G + + ++ P G G
Sbjct: 23 AAREFARAGVPVFPCAPNGKRPLTHGGFHDATTDFSQVQAWWDQIPNANIGLPTGHPSG- 81
Query: 65 LYAFDIDSKDEKTANTFKDTFEILHGTP--IVRIGQKPKILIPFRMNKEGIKKKKTTEST 122
+ D+D EK G + + P ++++ ++
Sbjct: 82 VVVVDVD-LHEKVNGYDAINRAHDAGKLGHWEVVTRTPSGGAHLIYPATPATQQRSWQAA 140
Query: 123 QGHLDILGCGQYFVAYNIH-PKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEIT 181
+ +D G G Y + H +++ + + + + +
Sbjct: 141 RAGVDFRGDGGYIIVPPSHRHIDGQQHHYRLDQVNNGPATA--VDAQGLRDFLDPRPAVP 198
Query: 182 VPLVKDKKSI 191
P + +
Sbjct: 199 APESRGTRRT 208
>gi|62327219|ref|YP_223957.1| gp33 [Phage phiJL001]
gi|50059537|gb|AAT69509.1| gp33 [Phage phiJL001]
Length = 747
Score = 55.1 bits (131), Expect = 4e-05, Method: Composition-based stats.
Identities = 60/370 (16%), Positives = 128/370 (34%), Gaps = 34/370 (9%)
Query: 432 QDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSG--YFESEEVMDYFTRC 489
+DGI+ +G+ L+ K V G + +L+ V ++E Y
Sbjct: 385 KDGIVFSPSGEAPPQAYNLW--KGFACQAVAGSAHERWLEHVFENVCNGNDEHYKY---T 439
Query: 490 VGMALL----GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545
+G A +++ + +RG G+GK+T + + F Y ++ + + N
Sbjct: 440 IGWAARLVQNPATQSETALVMRGKEGTGKNTFVGTLGSFFPRHYFESSSSGQFLGNFN-- 497
Query: 546 AGKANPSLIRLMGSRIVIISET-NENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604
L +V +E D+ + A +K + + M + + P
Sbjct: 498 --------AHLRDKVLVHANEAFFAGDKKHEATLKMIVTEEMMPIEAKGVD-ITRCPNYL 548
Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN-RDASFAQKLETKYTLEAKKWFLKGV 663
+ N V D+ RR++V+ D +D+S+ K++ + ++ L+ +
Sbjct: 549 HVVMSSNSDWVVPAGPDS--RRFMVL--DVSDKRLQDSSYFAKIKNELNNGGRENLLRFL 604
Query: 664 KAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIG-----ENLWEESHSLAKSY 718
Y +V + ++ + W D G E+ W + +
Sbjct: 605 MDYDLSDYNVRRVPITEALLDQRMRTMPKLGQWWMARLDRGYVINPEDGWSRELEVEHVW 664
Query: 719 SEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESV 778
Y + + +TR + GI+R++++ KR + L
Sbjct: 665 HSYVKDMQDQSEHYRATRIELGKFLSRA-CPGIQRKRVQTGGGGKRPVYHLPTLEECRDQ 723
Query: 779 DDNSNIIDFK 788
D+ F+
Sbjct: 724 FDDVMGGPFE 733
>gi|56694890|ref|YP_164400.1| hypothetical protein BCBBV1cgp22 [Bacillus phage BCJA1c]
gi|52631317|gb|AAU85069.1| 22 [Bacillus phage BCJA1c]
Length = 740
Score = 55.1 bits (131), Expect = 4e-05, Method: Composition-based stats.
Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 8/83 (9%)
Query: 209 EITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQ-GSTYDEENFNY 267
++ A L + + EW+ V MA+ E +S WSK+ G Y
Sbjct: 6 DLIALLEYIDPSYL--DYQEWLNVGMALKSEGYTASD----WEDWSKRDGPRYHPGECFK 59
Query: 268 KWDTFDFEEI-GDTAKKRSTFTS 289
KW TF+ I G T + +
Sbjct: 60 KWTTFEGNGITGATITQMAKDNG 82
>gi|77405307|ref|ZP_00782403.1| conserved hypothetical protein [Streptococcus agalactiae H36B]
gi|77176102|gb|EAO78875.1| conserved hypothetical protein [Streptococcus agalactiae H36B]
Length = 765
Score = 55.1 bits (131), Expect = 4e-05, Method: Composition-based stats.
Identities = 25/109 (22%), Positives = 37/109 (33%), Gaps = 12/109 (11%)
Query: 225 SHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKR 284
+ W+ V MA+ HE + WS+ S Y + KWD+F G
Sbjct: 27 DYQTWVQVGMALKHEGYTAMD----WDVWSQSDSRYKKGECFAKWDSFQGNGFGTITGA- 81
Query: 285 STFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAW 333
T T L +G + R SD ++ + Y K W
Sbjct: 82 -TITQLAKDNGWTSSEY----RNSDDAHELSWDDTIDRD--YKIVDKNW 123
>gi|123188785|ref|XP_001281913.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121837810|gb|EAX68983.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 270
Score = 55.1 bits (131), Expect = 4e-05, Method: Composition-based stats.
Identities = 44/273 (16%), Positives = 81/273 (29%), Gaps = 29/273 (10%)
Query: 478 ESEEVMDYFTRCVGMALL-GGNKAQRFIHIRGVGGSGKSTLM-NLIKYAF-GNQYVINAE 534
+E V +Y L K + + I G G+GK+T +++ G
Sbjct: 3 GNERVYEYILCWFANILQHPSAKNETALIIIGKQGTGKNTFFTDILCKLLEGYSNPNMTN 62
Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEND---EINAAKIKQMTGGDCMTARL 591
+I ++++ +E D +N+ +K +
Sbjct: 63 LENICGKFNSSIEN----------MKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVER 112
Query: 592 NYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKY 651
Y + + + N D RRY+V+ +D + L
Sbjct: 113 KYKDQRVCENVANFIMVSNNVVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETL 168
Query: 652 TLEAKKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEE 710
T + IP + E + Y+ +ID+ +
Sbjct: 169 TPNFYNHLFSYFMTLDISKFNPRQIPHTEERQTLLEANKS-VYELFIDETNFECLDER-- 225
Query: 711 SHSLAKSYSEYREQELNYDRKRISTRTVTLNLK 743
SL SY +Y ++ Y S RT N+K
Sbjct: 226 --SLYDSYKQYCQE---YGYMAASKRTFLANVK 253
>gi|325193390|emb|CCA27721.1| AlNc14C654G12337 [Albugo laibachii Nc14]
Length = 470
Score = 55.1 bits (131), Expect = 4e-05, Method: Composition-based stats.
Identities = 31/161 (19%), Positives = 58/161 (36%), Gaps = 18/161 (11%)
Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540
+ +D C+G +L + R + + G GG+GKS +N + +
Sbjct: 196 DSLDTLMWCIGNSLRDPVQTPRMLFLFGEGGNGKSVAINTLISNLPCVVATLSRDYIGRT 255
Query: 541 NRPPEAGKANPSLIRLMGSRIVIISE--TNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598
+ L R+M R + + N + ++N A +K ++G D +T+ G
Sbjct: 256 TQQLT----ETDLERIMTHRFICYGDVVLNRHRQVNEAFLKIVSGNDAVTSSRMSGR--- 308
Query: 599 ESPASFTPFIVPNKH----LFVRNPDDAWWRRYIVIPFDKP 635
N V P + RR + + +KP
Sbjct: 309 ---LQCGGLFATNALWKAYPSVMMP--WFSRRVVCVELNKP 344
>gi|238028381|ref|YP_002912612.1| inner membrane protein [Burkholderia glumae BGR1]
gi|237877575|gb|ACR29908.1| Inner membrane protein [Burkholderia glumae BGR1]
Length = 958
Score = 55.1 bits (131), Expect = 5e-05, Method: Composition-based stats.
Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
Query: 224 GSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTF 272
D W V MA+ E +G + WS+ Y+ ++ W +F
Sbjct: 22 DDRDTWRQVGMALKAEF--GEEGFALWNEWSQGAQNYNGKDARDVWKSF 68
>gi|145354411|ref|XP_001421479.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581716|gb|ABO99772.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 689
Score = 55.1 bits (131), Expect = 5e-05, Method: Composition-based stats.
Identities = 52/365 (14%), Positives = 114/365 (31%), Gaps = 46/365 (12%)
Query: 420 DLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFES 479
D LD + + +L G V+ + + FL+L+
Sbjct: 321 DNLDVVPK--NCSNKTYNLWRGYPVEGIPS---------ELGKEGDVKPFLELLLVLCGG 369
Query: 480 EE-VMDYFTRCVGMALLGGNKAQRF--IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEAS 536
E ++Y + L + + + RGV G+GK T ++L+ G + A+
Sbjct: 370 SENALEYASNWFA-CLFQRPEEKPITSLVFRGVQGTGKGTFLHLLHALMGKTFHETADP- 427
Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNE-NDEINAAKIKQMTGGDCMTARLNYGN 595
+ AN + G + + ++E +E ++ +K M T +
Sbjct: 428 ----KKDIFGTHAN----MIEGKKCLALNEADECIMKMYRKLLKSMLTDTSFTINPKHVQ 479
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
Y F + + D RR++V+ N F ++ Y +
Sbjct: 480 LYVIMNLVGFLFFSNDDYPVFLEMSD---RRFVVMEPLLTHLNDQTGFLKEFREVYIRDP 536
Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLK--AKEEE----RQGTDTYQAWIDDCCDIGE---- 705
+ L+ + ++ GLD+ + + R + W + C E
Sbjct: 537 RN--LRAIYDHLM-GLDLSTFDYVKDRPTTDAYSEMKRGCMPKFTRWF-EHCVTVEFPEK 592
Query: 706 --NLWEESHSLAKSYSEY--REQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWK 761
+ + Y + ++ + K+KG ++ + + +
Sbjct: 593 WVGNKIRNSDIFIEYQTWLPAAARGQDSATKVGNKLKDFFKKEKGHRVPMQEDHLRQGRD 652
Query: 762 SKRII 766
K +
Sbjct: 653 EKGVY 657
>gi|283778057|ref|YP_003368812.1| bifunctional DNA primase/polymerase [Pirellula staleyi DSM 6068]
gi|283436510|gb|ADB14952.1| Bifunctional DNA primase/polymerase [Pirellula staleyi DSM 6068]
Length = 409
Score = 55.1 bits (131), Expect = 5e-05, Method: Composition-based stats.
Identities = 39/212 (18%), Positives = 70/212 (33%), Gaps = 31/212 (14%)
Query: 8 EQAKQAIHNGFKLIPLRLGDKRPQRLGK--WEEQLLSSEKIDKL----PACGFGFVCGVG 61
+ + G L+PL K+P ++ I P G V G
Sbjct: 7 TEGLRLHRLGLSLLPLHYKQKKPAVRSWKRYQTTRPDEATIYHWWANHPERGLAIVLGQV 66
Query: 62 EQPLYAFDIDSKD--EKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIK---KK 116
+ A D D+ + E+ A +F + L R G+ + R + E I+ K+
Sbjct: 67 SSCIVARDFDTMEAYEQWAASFSELAAKLPTVETSR-GRH----VYARADFEAIRRRGKE 121
Query: 117 KTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKF 176
E G L + GC Y A + +Y W L+S ++ +
Sbjct: 122 TIYEFDDGELRLSGC--YVAAPPSMHPSGSQYRW-------------LISMVELPPVVDV 166
Query: 177 FQEITVPLVKDKKSIIPSKTWTNNNNRQYTNR 208
F VP ++ + ++ N + +
Sbjct: 167 FSCGFVPCNREDRDYRENRANRVNPDDRADLA 198
>gi|153853410|ref|ZP_01994819.1| hypothetical protein DORLON_00808 [Dorea longicatena DSM 13814]
gi|149754196|gb|EDM64127.1| hypothetical protein DORLON_00808 [Dorea longicatena DSM 13814]
Length = 750
Score = 55.1 bits (131), Expect = 5e-05, Method: Composition-based stats.
Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 6/64 (9%)
Query: 209 EITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYK 268
++ + + +W+ V MA+ HE ++ WSK Y K
Sbjct: 6 DLQEIIEYLNPA--ELDYQDWVNVGMALKHE----GYSVDVWDTWSKNDRRYHSGECEKK 59
Query: 269 WDTF 272
W+TF
Sbjct: 60 WNTF 63
>gi|112943754|gb|ABI26321.1| hypothetical protein lr1428 [Lactobacillus reuteri]
Length = 978
Score = 55.1 bits (131), Expect = 5e-05, Method: Composition-based stats.
Identities = 40/283 (14%), Positives = 85/283 (30%), Gaps = 36/283 (12%)
Query: 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRL----M 557
R + GV GSGK+ L L+ F + + +P+LI
Sbjct: 641 RAFILYGVPGSGKTVLAKLLCKIFDEPNR---PSRILCSEPNINKVFTDPNLIDANDTKK 697
Query: 558 GSRIVIISETNENDEINA------AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPN 611
G ++ + + N I +T + T + + S + N
Sbjct: 698 GKLVLWFDDFQSDGRSNEIKRNVGKVINAVTSNEAKTGAAKFQQYHDIKLPS-LIVLSTN 756
Query: 612 KHLFVRNPDDAWWRRYIVIPFDKPIANRDASFA-----------QKLETKYTLEAKKWFL 660
+++ R VI K + + D + + +K++ + +
Sbjct: 757 DVPQIKHI--GTVDRIFVIKSSKRLTD-DPNISFSSNIDAWINNKKVQEAFFCIILNTAV 813
Query: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIG--ENLWEESHSLAKSY 718
+SK I + A+ + +A+ ++ + + ++ L Y
Sbjct: 814 D--ILNMSKDEAKSIFDKSNSAQSALSNLNSSIEAFFEEQNITSLYDLVGMQAKKLFDVY 871
Query: 719 SEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWK 761
E E+ Y + R ++ G K + K
Sbjct: 872 LE-GEKNFAY---ATTYRAFCDQIEGLGLNLRRKHFNHKNYQK 910
>gi|118197555|ref|YP_874267.1| helicase [Ecotropis obliqua NPV]
gi|113472550|gb|ABI35757.1| helicase [Ecotropis obliqua NPV]
gi|295442616|gb|ADG21232.1| helicase [Ecotropis obliqua NPV]
Length = 1251
Score = 55.1 bits (131), Expect = 5e-05, Method: Composition-based stats.
Identities = 27/158 (17%), Positives = 61/158 (38%), Gaps = 19/158 (12%)
Query: 487 TRCVGMAL---LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP 543
+ + + + ++I G GSGKS+ ++++ + NA++ + +
Sbjct: 931 LLVIHYCASLGIPSDYEKMCLYITGKPGSGKSSNTEILEHII-TVHKHNADSYTL-SKKE 988
Query: 544 PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCM---TARLNYGNTYSES 600
+ +A+ + +L +I+E E N + K T D + Y +
Sbjct: 989 TDEMEADKMISQLY-----VINEMKE---CNDSFFK--TSADSTKSNSVCRKYQGSQKYE 1038
Query: 601 PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN 638
A++ I+ NK L++ N D R+ ++
Sbjct: 1039 -ANYKLMIINNKPLYISNYDKGVRNRFAIVNMKHEFVE 1075
>gi|294486130|gb|ADE87946.1| putative primase [Escherichia phage vB_EcoM_ECO1230-10]
Length = 767
Score = 55.1 bits (131), Expect = 5e-05, Method: Composition-based stats.
Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 5/71 (7%)
Query: 201 NNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTY 260
N + T +EI LS + W+ + MAV E G + WS+Q Y
Sbjct: 6 NYKDLTEQEIAEALSYIDA---GCDRETWVRMAMAVKSELGDG--GFTVWNDWSRQSDKY 60
Query: 261 DEENFNYKWDT 271
+ ++ W +
Sbjct: 61 NSKDARDTWKS 71
>gi|187921139|ref|YP_001890171.1| Primase 2 [Burkholderia phytofirmans PsJN]
gi|187719577|gb|ACD20800.1| Primase 2 [Burkholderia phytofirmans PsJN]
Length = 621
Score = 55.1 bits (131), Expect = 5e-05, Method: Composition-based stats.
Identities = 21/110 (19%), Positives = 36/110 (32%), Gaps = 10/110 (9%)
Query: 199 NNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGS 258
+ + + A L+ E + W+ + A+ H G EI WS+
Sbjct: 1 MSMPQTDETARVRAALALIPAE----DYGTWVDMAFALKHGL--GDAGFEIWDEWSRTAG 54
Query: 259 TYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFS 308
YDE W + K ++ L HG + +G R +
Sbjct: 55 NYDERAARTTWCSVKESGG----KTLASLFWLAREHGFDLRRGHYPDRLA 100
>gi|311694870|gb|ADP97743.1| conserved hypothetical protein [marine bacterium HP15]
Length = 527
Score = 54.7 bits (130), Expect = 5e-05, Method: Composition-based stats.
Identities = 45/309 (14%), Positives = 87/309 (28%), Gaps = 36/309 (11%)
Query: 456 TGTPFVEGEP--------SQEFLDLVSGYF-ESEEVMDYFTRCVGMAL--LGGNKAQRFI 504
TG P V E + DL+ + ++ +D+ R + L +G +
Sbjct: 188 TGIPLVPDEKAKAEKYRKCKGIFDLLCHLCNQDQDTIDWVVRWLAYPLQNVGAKLDTALL 247
Query: 505 HIRGVGGSGKSTLM-NLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVI 563
V GSGKS +++ +G I + L+ + ++
Sbjct: 248 FHSDVHGSGKSLFFGEVMRMIYGRYAAI-----LGQHQLESQYTDWRSRLLYAVFEEVLS 302
Query: 564 ISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAW 623
SE IK M G + + E+ F+ F P D
Sbjct: 303 RSE----KHNQMGTIKHMITGQTQRIERKFVTGWEEANHMNGVFLSNEIQPFPLEPSD-- 356
Query: 624 WRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY-ISKGLDVDIP--EVCL 680
RR++V+ P K+ + F + + Y ++ P V
Sbjct: 357 -RRFLVV---WPKGTLSKELQDKVSYELDNGGPAAFYQLLLDYPLADFTKHTKPLDTVAR 412
Query: 681 KAKEEERQGTDTYQAWIDDC---CDIGENLWEESHSLAKSYSEYREQELNYDRKRIST-R 736
+ E ++ + D + + Y + + N
Sbjct: 413 QRVIEFSLPN--FEVFFRDWKAGDLDIPFHSCTTRDVYLFYRRWCTETGNRALTETKLIT 470
Query: 737 TVTLNLKQK 745
+ L +
Sbjct: 471 IFSSRLVKA 479
>gi|281419573|ref|ZP_06250583.1| Bifunctional DNA primase/polymerase [Clostridium thermocellum JW20]
gi|281406762|gb|EFB37030.1| Bifunctional DNA primase/polymerase [Clostridium thermocellum JW20]
Length = 268
Score = 54.7 bits (130), Expect = 5e-05, Method: Composition-based stats.
Identities = 38/220 (17%), Positives = 63/220 (28%), Gaps = 30/220 (13%)
Query: 4 MQWKEQAKQAIHNGFKLIPLR-----------------LGDKRPQRLGKWEEQLLSSEKI 46
M + A + +IPL K P G ++ E+I
Sbjct: 3 MTMMDAALKYAETNIPVIPLHWICEDGSCSCKKGQQCDSKGKHPLYTGWYKNSTTDVEQI 62
Query: 47 DKL----PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKI 102
K P G G L D+D ++T + + T L T G+
Sbjct: 63 KKWWTKTPNANIGIPTGAKSDWLV-LDVDDGGDETLSALESTHGKLPDTVTAVTGR---G 118
Query: 103 LIPFRMNKEGIKKKKTTESTQGHLDILGCGQ-YFVAYNIHPKTKKEYTWTTPPHRFKVED 161
+ + LD G VA +IH + Y W +
Sbjct: 119 GRHYIFKYPQGRSIPNKTKFAPGLDTRSTGGLIVVAPSIHV-SGNRYEWIKD--YSPFDR 175
Query: 162 TPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNN 201
TP + + L + + + P + I K + N+
Sbjct: 176 TPAEAPAWLLKLMERVEVLLTPF-EGSSIIAEIKEGSRNS 214
>gi|281419301|ref|ZP_06250316.1| Bifunctional DNA primase/polymerase [Clostridium thermocellum JW20]
gi|281406921|gb|EFB37184.1| Bifunctional DNA primase/polymerase [Clostridium thermocellum JW20]
Length = 268
Score = 54.7 bits (130), Expect = 6e-05, Method: Composition-based stats.
Identities = 35/228 (15%), Positives = 60/228 (26%), Gaps = 29/228 (12%)
Query: 4 MQWKEQAKQAIHNGFKLIPLR-----------------LGDKRPQRLGKWEEQLLSSEKI 46
+ + A + +IPL K P G ++ E+I
Sbjct: 3 VTMMDAALKYAEANIPVIPLHWICEDGSCSCKKGQQCDSKGKHPLYTGWYKNSTADMEQI 62
Query: 47 DKL----PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKI 102
K P G G L D+D ++T + + T+ L T G+
Sbjct: 63 KKWWTKTPNANIGIPTGEKSGWLV-LDVDDGGDETLSALESTYGNLPDTVTAVTGR---G 118
Query: 103 LIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDT 162
+ + DI G V + Y W F +
Sbjct: 119 GRHYIFKYPEGRSIPNKTKFASGFDIRSNGGLIVVSPSVHISGNRYEWIKDHSLF--DRN 176
Query: 163 PLLSEEDVEYLFKFFQEITVPL--VKDKKSIIPSKTWTNNNNRQYTNR 208
P + E + L + + + P I + + T R
Sbjct: 177 PAEAPEWLLKLMERVEVLLTPFEGSSIAAEIKEGSRNSTLTSLAGTMR 224
>gi|255320906|ref|ZP_05362080.1| bifunctional DNA primase/polymerase [Acinetobacter radioresistens
SK82]
gi|255302075|gb|EET81318.1| bifunctional DNA primase/polymerase [Acinetobacter radioresistens
SK82]
Length = 587
Score = 54.7 bits (130), Expect = 6e-05, Method: Composition-based stats.
Identities = 76/529 (14%), Positives = 151/529 (28%), Gaps = 118/529 (22%)
Query: 228 EWIPVVMAVHHETRGSSK-GKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRST 286
+W+ + ET + GK+I ++ S + + +W+
Sbjct: 82 KWLARFCLIEGETNIWDEYGKKIWKK-SAFTTMLGGKKVFDQWNGHL------------- 127
Query: 287 FTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSL 346
H K I + + R D +K + F+ KA D +
Sbjct: 128 -------HRKTITRDDVDGRLEDGGHKKAKEMI--DRFIMLEGKKA--CWDTFRRELVGT 176
Query: 347 TLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTA 406
+ + D D SK R ++ + + +
Sbjct: 177 DV-----------------MKDNWAGAYDLWVKSKEKRMIWHENLVFDPTMKTKEG---- 215
Query: 407 QSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPS 466
Q + + LLD++++ LG G F P
Sbjct: 216 QINTYDGMIIL--PLLDTNNQMLG-------------------------AGEAFESCIPI 248
Query: 467 QEFLDLVSGYFESEEVMDYFTRCVGMALL--GGNKAQRFIHIRGVGGSGKSTLMN-LIKY 523
L + G + ++ + + L G + V GSGKS ++
Sbjct: 249 INLLKFLCGNENNA--YEWILKWLAYPLQHPGAKMNTSILMCSAVQGSGKSLFFEKVMTR 306
Query: 524 AFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISET--NENDEINAAKIKQM 581
+G +Y + + + A + + E N++ IK M
Sbjct: 307 IYGEKYSVTLGQNGLESIYTDWAER----------KLYCLFEEIFNNKSKFGMMGLIKHM 356
Query: 582 TGGDCMTARLNYGNTYSESPASFTPFIVPNK--HLFVRNPDDAWWRRYIVIPFDKPIANR 639
G+ + + + YS++ + N+ L + D RR++V+ N
Sbjct: 357 ITGEKIRIEKKFMSGYSQN-NHINCVFLSNEVQPLAIEERD----RRFLVLE-PNQKLND 410
Query: 640 DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQ----- 694
D +L + +A F + + KAK++ Q
Sbjct: 411 DLKKHIELCLEPDSQAISAFYTYLLNLDLTDFNEYTEPPMTKAKQK------IIQFGLPG 464
Query: 695 --AWIDDC---CDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738
++DD + S L +Y E+ + K I++
Sbjct: 465 WKLFLDDWRGGYLKYPFVCCLSDDLYTAYREWCHKNGE---KIIASNKF 510
>gi|330963895|gb|EGH64155.1| bifunctional DNA primase/polymerase [Pseudomonas syringae pv.
actinidiae str. M302091]
Length = 823
Score = 54.7 bits (130), Expect = 6e-05, Method: Composition-based stats.
Identities = 52/308 (16%), Positives = 98/308 (31%), Gaps = 34/308 (11%)
Query: 447 TKELYITKSTGTPFVEGEP---SQEFLDLVSGYFESEEVMD-YFTRCVGMAL--LGGNKA 500
+YI G P L+S +E + TR + L LG
Sbjct: 463 DPSIYINTFDGLPLEPVNDDVACANLRWLISFLCNHDEAAALWLTRWLAYPLQHLGAKMD 522
Query: 501 QRFIHIRGVGGSGKST-LMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGS 559
+ + GSGKS + +G QY + + N +
Sbjct: 523 TAVLMHSTMEGSGKSLLFADTFGALYG-QYAATVGQTQLESNFNAWQSR----------K 571
Query: 560 RIVIISET-NENDEINA-AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLF-- 615
+ E + + N KIK + G + + N + E+ + N+ L
Sbjct: 572 MWAVFEEVVSRDQRYNQVGKIKHLVTGKTVRMESKFINGWEEA-NHMNAVFLSNEILPWP 630
Query: 616 VRNPDDAWWRRYIVI-PFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD 674
+ + D RR +V+ P + R + +LE+ W L+ ++
Sbjct: 631 ISDSD----RRMLVMWPMETLPVARQKAIGHELESGGVAALYGWLLRVDLGDFNERTRPP 686
Query: 675 IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEE--SHSLAKSYSEYREQELNYDRKR 732
+ R G T+ ++ ++G LW S L + E+ ++ +
Sbjct: 687 STASRERLVALSRAGWQTF-LYLWRYGELGRGLWAVCLSTDLYALFLEWCQRNKEH---V 742
Query: 733 ISTRTVTL 740
+S +L
Sbjct: 743 MSQTKFSL 750
Score = 47.8 bits (112), Expect = 0.008, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 30/72 (41%), Gaps = 9/72 (12%)
Query: 105 PFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPL 164
+R + E K+ E G + Q + +IHP T K YTW TPP E P+
Sbjct: 89 LYRADAENYKRFTVFELRAGLV------QDVLPPSIHPGTGKPYTWRTPP---DAEGLPV 139
Query: 165 LSEEDVEYLFKF 176
L + + +
Sbjct: 140 LISDLLNVWNNW 151
>gi|189462690|ref|ZP_03011475.1| hypothetical protein BACCOP_03387 [Bacteroides coprocola DSM 17136]
gi|189430559|gb|EDU99543.1| hypothetical protein BACCOP_03387 [Bacteroides coprocola DSM 17136]
Length = 397
Score = 54.7 bits (130), Expect = 6e-05, Method: Composition-based stats.
Identities = 34/204 (16%), Positives = 66/204 (32%), Gaps = 27/204 (13%)
Query: 455 STGTPFVEGEPSQEFLDLVSGYFESE--EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGS 512
+ P P L V F + + MDY L K + + +
Sbjct: 80 ISHRPQEGDFPCIRSL--VEHIFGEQYEQGMDYLQLLY---LYPIQKQPILLLVSEERNT 134
Query: 513 GKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDE 572
GKST +N +K + + + + N G ++++ E N
Sbjct: 135 GKSTFLNFLKAIY--------QNNVTFNTNEDFRSQFNSDWA---GKLLIMVDEVLLNRR 183
Query: 573 INAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPN--KHLFVRNPDD-AWWRRYIV 629
++ ++K ++ + E + N + + + +W R IV
Sbjct: 184 EDSERLKNLSTTLSYKVEAKGKDR-DEIGFFAKFVLCSNNEHLPVIIDAGETRYWVRKIV 242
Query: 630 IPFDKPIANRDASFAQKLETKYTL 653
P+ + D F QKL+T+
Sbjct: 243 -----PLKSDDTDFLQKLKTEIPA 261
>gi|312199632|ref|YP_004019693.1| bifunctional DNA primase/polymerase [Frankia sp. EuI1c]
gi|311230968|gb|ADP83823.1| Bifunctional DNA primase/polymerase [Frankia sp. EuI1c]
Length = 311
Score = 54.7 bits (130), Expect = 7e-05, Method: Composition-based stats.
Identities = 28/167 (16%), Positives = 52/167 (31%), Gaps = 24/167 (14%)
Query: 10 AKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEK-----IDKLPACGFGFVCGVGEQP 64
A G + P+R G K P KW + + ++ PA C
Sbjct: 12 ALALARRGMHVFPVRPGSKAPMV--KWGTEATVDPEVIAGWWERWPAASIAVACK--PSG 67
Query: 65 LYAFDIDSKDEKTANTFKDTFEILHGTPIVRI--GQKPKILIPFRMNKEGIKKKKTTEST 122
L D+D +++ P + G+ I + + ++
Sbjct: 68 LTVVDVD--GPAGRASWQALTARHGQAPTTSVTTGRD-DGGIHYWYRAPHVDPPGNSKGL 124
Query: 123 QG-HLDILGCGQ-----YFVAYNIHPKTKKEYTWTTPPHRFKVEDTP 163
G +D+ G G+ + HP + + Y W R + + P
Sbjct: 125 VGAGIDVRGAGEGAGGMVLAPPSRHP-SGRRYQWCD---RLSLAELP 167
>gi|170699160|ref|ZP_02890214.1| Primase 2 [Burkholderia ambifaria IOP40-10]
gi|170135955|gb|EDT04229.1| Primase 2 [Burkholderia ambifaria IOP40-10]
Length = 625
Score = 54.3 bits (129), Expect = 8e-05, Method: Composition-based stats.
Identities = 12/71 (16%), Positives = 25/71 (35%), Gaps = 6/71 (8%)
Query: 207 NREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFN 266
+ A L+ + ++ W+ + A+ +G EI WS+ + Y+E
Sbjct: 9 ADRVRAALAVIPAD----DYETWVDMAFALKQGF--GDEGFEIWDAWSRTAANYNERAAR 62
Query: 267 YKWDTFDFEEI 277
W +
Sbjct: 63 TTWRSVSASGG 73
>gi|23752361|ref|NP_705675.1| gp52 [Burkholderia phage Bcep781]
gi|23507228|gb|AAN38051.1| gp52 [Burkholderia phage Bcep781]
Length = 873
Score = 54.3 bits (129), Expect = 8e-05, Method: Composition-based stats.
Identities = 43/264 (16%), Positives = 72/264 (27%), Gaps = 55/264 (20%)
Query: 443 KVKPTKELYITKSTGTPFVEGEPS-QEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQ 501
V P ++ I P +G F + S+ + G K Q
Sbjct: 545 FVDPWRDAMI----ALPQWDGTQRLDTFFVDLCDALPSDALTATTQLLFA----GIVKRQ 596
Query: 502 --------RFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL 553
+ G GG+GKS + + A A A +
Sbjct: 597 LQPGAPLPVVPVLIGPGGTGKSYFVEQLAAALKFP---QPPALAFTDTIRMTMEAATSGI 653
Query: 554 IRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKH 613
L +E + +IK T T R Y S P F NKH
Sbjct: 654 AEL--------AEMSGMGRRETEEIKLWTTDTSDTYRAPYERRPSAHPRRFALIGTANKH 705
Query: 614 LFVRNPDDAWW-RRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLD 672
DA RR++ + ++PI W ++ ++ +
Sbjct: 706 ---ETNHDATGNRRFMPVFVNRPID------------------PNWHVEALQLFAEAKTR 744
Query: 673 VDIPE-----VCLKAKEEERQGTD 691
P+ + +A ++ D
Sbjct: 745 FVEPDGEYARLVRRASALVKEYND 768
>gi|291336073|gb|ADD95660.1| hypothetical protein [uncultured phage MedDCM-OCT-S11-C349]
Length = 633
Score = 54.3 bits (129), Expect = 8e-05, Method: Composition-based stats.
Identities = 36/224 (16%), Positives = 75/224 (33%), Gaps = 28/224 (12%)
Query: 105 PFRMNKEGIKKKKTTESTQ---GHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVED 161
FR+ +E K + G +IL G+ V Y +P K + P ++++
Sbjct: 1 MFRVPEELWADVKGHGLRKEDGGDYEIL-WGRQGVVYGAYPGGK-----VSKPGQYRL-- 52
Query: 162 TPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEF 221
+ D+ + + + + +SI + + + + I L+ ++
Sbjct: 53 -----QGDLTDIPTAPDWLLAEMRQPPRSINKKELDFTDRTQDEIAQIIFECLTVISQQG 107
Query: 222 YNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTY-----DEENFNYKWDTFDFEE 276
G+ D W+ + MA+H + G + WS + Y + W +F
Sbjct: 108 -KGTRDHWVKIGMAIHSALP-TDMGLHLWASWSCEDPDYASEWENSNPCEEVWYSFKGNG 165
Query: 277 IG-----DTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAM 315
+G A + F K I + A + +
Sbjct: 166 VGLGTLIWLADREDPDRKRFSEDTKKIVQSAEAKVVHEVRTSTL 209
>gi|47842852|ref|NP_958158.2| gp51 [Burkholderia phage Bcep43]
gi|47719040|gb|AAR89344.2| gp51 [Burkholderia phage Bcep43]
Length = 873
Score = 54.3 bits (129), Expect = 8e-05, Method: Composition-based stats.
Identities = 43/264 (16%), Positives = 72/264 (27%), Gaps = 55/264 (20%)
Query: 443 KVKPTKELYITKSTGTPFVEGEPS-QEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQ 501
V P ++ I P +G F + S+ + G K Q
Sbjct: 545 FVDPWRDAMI----ALPQWDGTQRLDTFFVDLCDALPSDALTATTQLLFA----GIVKRQ 596
Query: 502 --------RFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL 553
+ G GG+GKS + + A A A +
Sbjct: 597 LQPGAPLPVVPVLIGPGGTGKSYFVEQLAAALKFP---QPPALAFTDTIRMTMEAATSGI 653
Query: 554 IRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKH 613
L +E + +IK T T R Y S P F NKH
Sbjct: 654 AEL--------AEMSGMGRRETEEIKLWTTDTSDTYRAPYERRPSAHPRRFALIGTANKH 705
Query: 614 LFVRNPDDAWW-RRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLD 672
DA RR++ + ++PI W ++ ++ +
Sbjct: 706 ---ETNHDATGNRRFMPVFVNRPID------------------PNWHVEALQLFAEAKTR 744
Query: 673 VDIPE-----VCLKAKEEERQGTD 691
P+ + +A ++ D
Sbjct: 745 FVEPDGEYARLVRRASALVKEYND 768
>gi|120610295|ref|YP_969973.1| virulence-associated E family protein [Acidovorax citrulli AAC00-1]
gi|120588759|gb|ABM32199.1| virulence-associated E family protein [Acidovorax citrulli AAC00-1]
Length = 892
Score = 54.3 bits (129), Expect = 8e-05, Method: Composition-based stats.
Identities = 40/219 (18%), Positives = 67/219 (30%), Gaps = 38/219 (17%)
Query: 460 FVEGEPSQEFLDLVSGYFESE---EVMDYFTRCVGMALLGGN--------KAQRFIHIRG 508
+ E +++L V G + + Y L+G K + + G
Sbjct: 544 WDEVPRLEKWLVHVLGKTPDDYKPRRLRYLQLVGKYILMGHVARVMEPGCKFDYSVVLEG 603
Query: 509 VGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN 568
GG GKSTL+N + D + + G S ++ G +SE
Sbjct: 604 TGGIGKSTLINTLVGL------------DFFSDTHFDIGTGKDSYEQIAGIVAYELSEMT 651
Query: 569 ENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPN---KHLFVRNPDDAWWR 625
+A +K R YG + P + N + R
Sbjct: 652 AFRRADAEAVKAFFSSRKDRYRGAYGRYVQDHPRQVVIWCTTNKRQYLFDITGN-----R 706
Query: 626 RYIVIPFDKPIANRDASFA--QKLETKYTLEAKKWFLKG 662
R+ + + R A+ QK + EA +L G
Sbjct: 707 RF----WPVLVPGR-ANLVWLQKFRGQLFAEALHLYLAG 740
>gi|167518862|ref|XP_001743771.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163777733|gb|EDQ91349.1| predicted protein [Monosiga brevicollis MX1]
Length = 589
Score = 54.3 bits (129), Expect = 8e-05, Method: Composition-based stats.
Identities = 28/171 (16%), Positives = 56/171 (32%), Gaps = 23/171 (13%)
Query: 452 ITKSTGTPFVEGEPSQEFLDLVSGYFES------EEVMDYFTRCVGMALLGGNKAQRFIH 505
+ + P E + L + G+ + + +Y + G K Q +
Sbjct: 129 LDREMQIPQEAQEKASRGLQYILGFIKDIICGGYAQQDEYILNWLSCTAAG-VKVQTHLL 187
Query: 506 IRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIIS 565
+ G GG GKS L L++ G +Y + ++ Q G ++++
Sbjct: 188 MEGDGGEGKSLLCELMREILGARYYSTSNVEEVCQ-----------YTSNFEGRSLIVLE 236
Query: 566 ETN----ENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612
E + +K +T R + Y +S +F + N
Sbjct: 237 EMPVSSNSSKRGFTDALKSLTTESVFACRRMHNQAYQQS-NTFNIIVNSNH 286
>gi|126727690|ref|ZP_01743522.1| Hypothetical prophage lsa1protein [Rhodobacterales bacterium
HTCC2150]
gi|126703106|gb|EBA02207.1| Hypothetical prophage lsa1protein [Rhodobacterales bacterium
HTCC2150]
Length = 184
Score = 54.3 bits (129), Expect = 8e-05, Method: Composition-based stats.
Identities = 36/170 (21%), Positives = 61/170 (35%), Gaps = 18/170 (10%)
Query: 8 EQAKQAIHNGFKLIPLRLGDKRPQRLG-----KWEEQLLSSEKIDKLPAC---GFGFVCG 59
+ A G+ ++ ++ G K+P+ +W ++ G G VCG
Sbjct: 6 DAALDYASRGWPVLAIKAGTKQPRDAAVNGGPRWNATTDLETINNRWGIADPPGIGIVCG 65
Query: 60 VGEQPLYAFDIDSKDEKTANT--FKDTFEILHGTPIVRIGQKPKIL---IPFR-MNKEGI 113
+ L DID+ D A+ E HGT + K + + FR ++ I
Sbjct: 66 IDSG-LLVIDIDTDDGHGADGPTSLAALEAKHGTLPATVEAKTQSGGRHLYFRYLDGPQI 124
Query: 114 KKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTP 163
+D G G + VA T +Y W P+ ++ D P
Sbjct: 125 GNGAGVIGP--GIDHRGEGGFVVAPP-SQGTYGDYLWVRSPNDHEIADCP 171
>gi|291335468|gb|ADD95080.1| hypothetical protein [uncultured phage MedDCM-OCT-S04-C348]
Length = 243
Score = 54.3 bits (129), Expect = 9e-05, Method: Composition-based stats.
Identities = 16/69 (23%), Positives = 25/69 (36%), Gaps = 4/69 (5%)
Query: 209 EITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYK 268
E + E + +D WI V ++H + WSKQ S Y E + +
Sbjct: 3 EAVEAMWAMPPEAAD-DYDIWITVGQSLHSV---DDTLLDPWDEWSKQSSKYKEGECHRR 58
Query: 269 WDTFDFEEI 277
W +F
Sbjct: 59 WLSFSKAGG 67
>gi|134303486|ref|YP_001111355.1| hypothetical protein GrBNV_gp88 [Gryllus bimaculatus nudivirus]
gi|134022872|gb|ABO45421.1| unknown [Gryllus bimaculatus nudivirus]
Length = 1329
Score = 54.3 bits (129), Expect = 9e-05, Method: Composition-based stats.
Identities = 41/256 (16%), Positives = 91/256 (35%), Gaps = 40/256 (15%)
Query: 500 AQRFI-HIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMG 558
RFI + G G +GK+ +I F A + Q ++ +A +
Sbjct: 915 ENRFINILYGTGDNGKTHWCEIINCLF---------AGSVCQINNLDSNEARSHIASSYS 965
Query: 559 SRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRN 618
+ VI++E + +K ++G D Y + S + F N + +N
Sbjct: 966 A--VIVNEIK---YLTENIMKAISGNDKSDYSTFYTQKLTPSTHNSALFGATNCVISFKN 1020
Query: 619 P--DDAWWRRYIVIPFDKPIANRDASFAQK------LETKYTLEAKKWFLKGVKAYI--- 667
D A +R++VI I N D + + K ++ +Y + + + + Y+
Sbjct: 1021 KNIDTASIKRFLVIELIGKIRN-DCNISCKDFFINFIKKEYLIGVTQNVPRVLSHYLCFL 1079
Query: 668 --------SKGLDVDIPEVCLKAKEEER----QGTDTYQAWIDDC-CDIGENLWEESHSL 714
L V ++ + E + + + + +I + N + +S +
Sbjct: 1080 IFSRFLDNRNSLYVTNIDIHNEDTENYQKEVYRENNIFYNFIHNMGLRFAPNFFMKSKDI 1139
Query: 715 AKSYSEYREQELNYDR 730
+Y ++ + +
Sbjct: 1140 LNLARKYIDENNKFIK 1155
>gi|15674737|ref|NP_268911.1| hypothetical protein SPy_0671 [Streptococcus phage 370.1]
gi|94992064|ref|YP_600163.1| ATPase [Streptococcus phage 2096.1]
gi|13621860|gb|AAK33632.1| hypothetical protein, phage associated [Streptococcus phage 370.1]
gi|94545572|gb|ABF35619.1| RecA-family ATPase [Streptococcus phage 2096.1]
Length = 757
Score = 54.0 bits (128), Expect = 9e-05, Method: Composition-based stats.
Identities = 30/171 (17%), Positives = 54/171 (31%), Gaps = 15/171 (8%)
Query: 208 REITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNY 267
++ L S+ +W+ V A+ HE + WS+ S Y +
Sbjct: 6 FDLLPLLDYIDPSKL--SYQDWVNVGFALKHEGYTAMD----WDIWSQSDSRYKKGECFA 59
Query: 268 KWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYT 327
KWD+F + G +T T L +G R SD ++ + Y
Sbjct: 60 KWDSF--QGNGLGTVTGATITQLAKENGWTSDY-----RTSDEAHELDWDSTIDRD--YK 110
Query: 328 ADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNK 378
K W + + + + I S + + P + +K
Sbjct: 111 IIDKNWIEAKEIREPTNWSPVHDLITYINTLFESTDKVGYVTETYPIEIDK 161
>gi|123189481|ref|XP_001282070.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121838350|gb|EAX69140.1| hypothetical protein TVAG_551650 [Trichomonas vaginalis G3]
Length = 258
Score = 54.0 bits (128), Expect = 9e-05, Method: Composition-based stats.
Identities = 40/251 (15%), Positives = 77/251 (30%), Gaps = 28/251 (11%)
Query: 499 KAQRFIHIRGVGGSGKSTLM-NLIKYAF-GNQYVINAEASDIMQNRPPEAGKANPSLIRL 556
K + + I G G+GK+T +++ G +I
Sbjct: 13 KNETALIIIGKQGTGKNTFFTDILCKLLEGYSNPNMTNLENICGKFNSSIEN-------- 64
Query: 557 MGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKH 613
++++ +E D +N+ +K + Y + + + N
Sbjct: 65 --MKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAV 122
Query: 614 LFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDV 673
D RRY+V+ +D + L T + +
Sbjct: 123 PMKLESSD---RRYVVVR-TSEAHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNP 178
Query: 674 D-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKR 732
IP + E + Y+ +ID+ + + SL SY +Y ++ Y
Sbjct: 179 RQIPHTEERQTLLEANKS-VYELFIDET----DFECLDERSLYDSYKQYCQE---YGYMT 230
Query: 733 ISTRTVTLNLK 743
S RT N+K
Sbjct: 231 ASKRTFLANVK 241
>gi|149882954|ref|YP_001294891.1| DNA primase [Burkholderia phage BcepNY3]
gi|148763605|gb|ABR10588.1| DNA primase [Burkholderia phage BcepNY3]
Length = 824
Score = 54.0 bits (128), Expect = 1e-04, Method: Composition-based stats.
Identities = 43/264 (16%), Positives = 72/264 (27%), Gaps = 55/264 (20%)
Query: 443 KVKPTKELYITKSTGTPFVEGEPS-QEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQ 501
V P ++ I P +G F + S+ + G K Q
Sbjct: 496 FVDPWRDAMI----ALPQWDGTQRLDTFFVDLCDALPSDALTATTQLLFA----GIVKRQ 547
Query: 502 --------RFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL 553
+ G GG+GKS + + A A A +
Sbjct: 548 LQPGAPLPVVPVLIGPGGTGKSYFVEQLAAALKFP---QPPALAFTDTIRMTMEAATSGI 604
Query: 554 IRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKH 613
L +E + +IK T T R Y S P F NKH
Sbjct: 605 AEL--------AEMSGMGRRETEEIKLWTTDTSDTYRAPYERRPSAHPRRFALIGTANKH 656
Query: 614 LFVRNPDDAWW-RRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLD 672
DA RR++ + ++PI W ++ ++ +
Sbjct: 657 ---ETNHDATGNRRFMPVFVNRPID------------------PNWHVEALQLFAEAKAR 695
Query: 673 VDIPE-----VCLKAKEEERQGTD 691
P+ + +A ++ D
Sbjct: 696 FVEPDGEYARLVRRASALVKEYND 719
>gi|291531537|emb|CBK97122.1| RecA-family ATPase [Eubacterium siraeum 70/3]
Length = 739
Score = 54.0 bits (128), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/189 (15%), Positives = 67/189 (35%), Gaps = 28/189 (14%)
Query: 207 NREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEI--ARRWSKQGSTYDEEN 264
+ ++ L + S+ EW+ V MA+ +G + WS + Y +
Sbjct: 5 DFDLNEALKYISPS--DLSYQEWVNVGMALK------EEGYSVTVWDNWSANDNRYHKGE 56
Query: 265 FNYKWDTFDFEE---IGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKK 321
KW++F+ G T + + + + G R D ++ + + +
Sbjct: 57 CEKKWESFNGSSSPVTGATIVQMAKDRGMMF--------GTGEERELDWDDEISYEHHDE 108
Query: 322 GHFLYTADTKAWYK-KDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNS 380
+ K W + K+ N W + I + L E+V + + E + K
Sbjct: 109 ----HVVVNKNWIEGKEINAPTDWQPHREII--RYLEALFEQSENVGYVVQSYEKDGKFI 162
Query: 381 KSPRFWFNT 389
+ + +++
Sbjct: 163 PANKGYYDR 171
>gi|288922735|ref|ZP_06416906.1| Bifunctional DNA primase/polymerase [Frankia sp. EUN1f]
gi|288345912|gb|EFC80270.1| Bifunctional DNA primase/polymerase [Frankia sp. EUN1f]
Length = 350
Score = 54.0 bits (128), Expect = 1e-04, Method: Composition-based stats.
Identities = 31/176 (17%), Positives = 48/176 (27%), Gaps = 40/176 (22%)
Query: 13 AIHNGFKLIPLRLGDKRPQ---------------RLGKWEEQLLSSEK-----IDKLPAC 52
A G+ ++PL G+KRP WE++ P
Sbjct: 52 AAARGWYVLPLLPGEKRPASHPADRCPCTGPCRDGHRTWEQRATLDGATITAYWSAHPTH 111
Query: 53 GFGFVCGVGEQPLYAFDIDSKDEK-------TANTFKDTFEILHGTPIVRIG-------- 97
G G G L D+D+ A T R+G
Sbjct: 112 GVGIATG--PSGLVVVDLDTPKPGDRPPSAVWAAEGVRTGVHALTVLARRVGESVTPTYA 169
Query: 98 -QKPKILIPFRMNKE-GIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWT 151
+ + G++ T S +D G VA + + + YT T
Sbjct: 170 VRTGRGGWHLYYQAPAGVRLTNTGRSIGPWIDTRAWGGQVVAAG-NTVSGRPYTLT 224
>gi|123488423|ref|XP_001325160.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121908055|gb|EAY12937.1| hypothetical protein TVAG_404830 [Trichomonas vaginalis G3]
Length = 895
Score = 54.0 bits (128), Expect = 1e-04, Method: Composition-based stats.
Identities = 38/251 (15%), Positives = 76/251 (30%), Gaps = 28/251 (11%)
Query: 499 KAQRFIHIRGVGGSGKSTLM-NLIKYAF-GNQYVINAEASDIMQNRPPEAGKANPSLIRL 556
K + + I G G+GK+T +++ G +I
Sbjct: 650 KNETALIIIGKQGTGKNTFFTDILCKLLEGYSNPNMTNLENICGKFNSSIEN-------- 701
Query: 557 MGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKH 613
++++ +E D +N+ +K + Y + + + N
Sbjct: 702 --MKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAV 759
Query: 614 LFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDV 673
D RRY+V+ +D + L T + +
Sbjct: 760 PMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNP 815
Query: 674 D-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKR 732
IP + E + Y+ +I++ + + SL Y +Y ++ Y
Sbjct: 816 RQIPHTEERQTLLEANKS-VYELFIEESDFVSLDER----SLYDLYKQYCQE---YGYMA 867
Query: 733 ISTRTVTLNLK 743
S RT N+K
Sbjct: 868 ASKRTFLANVK 878
>gi|256377802|ref|YP_003101462.1| Bifunctional DNA primase/polymerase [Actinosynnema mirum DSM 43827]
gi|255922105|gb|ACU37616.1| Bifunctional DNA primase/polymerase [Actinosynnema mirum DSM 43827]
Length = 271
Score = 54.0 bits (128), Expect = 1e-04, Method: Composition-based stats.
Identities = 31/157 (19%), Positives = 49/157 (31%), Gaps = 13/157 (8%)
Query: 10 AKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPAC---GFGFVCGVGEQPLY 66
A A+ G+ +IPLR G K P +++ A G C L
Sbjct: 7 ALAAVERGWPVIPLRPGGKAPVLRDWDRRATADPDRVRAWWARAPFNVGIACRGA--GLL 64
Query: 67 AFDIDSKDEKTANTFKDTFEILHGTPIV-RIGQKPKILIPFRMNKEGIKKKKTTESTQGH 125
D+D ++ FE L +P+ R+G P ++ +
Sbjct: 65 VVDLDVP------GGREVFEGLGSSPVTYRVG-TPSGGEHRYFRAPPVRLGNSAGRLGPR 117
Query: 126 LDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDT 162
+D G G Y VA + + P E
Sbjct: 118 VDTRGVGGYVVAAGSAVRGVRYRVLCDEPVAPAPEWL 154
>gi|281419017|ref|ZP_06250034.1| Bifunctional DNA primase/polymerase [Clostridium thermocellum JW20]
gi|281419526|ref|ZP_06250539.1| Bifunctional DNA primase/polymerase [Clostridium thermocellum JW20]
gi|281406817|gb|EFB37082.1| Bifunctional DNA primase/polymerase [Clostridium thermocellum JW20]
gi|281407166|gb|EFB37427.1| Bifunctional DNA primase/polymerase [Clostridium thermocellum JW20]
gi|316941629|gb|ADU75663.1| Bifunctional DNA primase/polymerase [Clostridium thermocellum DSM
1313]
Length = 268
Score = 54.0 bits (128), Expect = 1e-04, Method: Composition-based stats.
Identities = 33/184 (17%), Positives = 49/184 (26%), Gaps = 29/184 (15%)
Query: 4 MQWKEQAKQAIHNGFKLIPLR-----------------LGDKRPQRLGKWEEQLLSSEKI 46
M + A + +IPL K P G ++ E+I
Sbjct: 3 MTMMDAAIKYAEANIPVIPLHWICEDGSCSCKAGSDCDSKGKHPLYTGWYKNSTTDVEQI 62
Query: 47 DKL----PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKI 102
K P G G L D+D ++T + + T L T G
Sbjct: 63 KKWWTKTPNANIGIPTGEKSGWLV-LDVDDGGDETLSALEATHGKLPDTVTAVTGS---G 118
Query: 103 LIPFRMNKEGIKKKKTTESTQGHLDILGCGQYF-VAYNIHPKTKKEYTW--TTPPHRFKV 159
+ + LD G VA +IH + Y W P
Sbjct: 119 GRHYVFIYPKGRSIPNKTKFAPGLDTRSTGGLIAVAPSIHV-SGNRYEWIKDHSPFDRTP 177
Query: 160 EDTP 163
+ P
Sbjct: 178 AEAP 181
>gi|38638662|ref|NP_944363.1| gp54 [Burkholderia phage Bcep1]
gi|34486044|gb|AAQ73401.1| gp54 [Burkholderia phage Bcep1]
Length = 824
Score = 54.0 bits (128), Expect = 1e-04, Method: Composition-based stats.
Identities = 42/264 (15%), Positives = 71/264 (26%), Gaps = 55/264 (20%)
Query: 443 KVKPTKELYITKSTGTPFVEGEPS-QEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQ 501
V P ++ I P +G F + S+ + G K Q
Sbjct: 496 FVDPWRDAMI----ALPQWDGTQRLDTFFVDLCDALPSDALTATTQLLFA----GIVKRQ 547
Query: 502 --------RFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL 553
+ G GG+GKS + + A A A +
Sbjct: 548 LQPGAPLPVVPVLIGPGGTGKSYFVEQLAAALKFP---QPPALAFTDTIRMTMEAATSGI 604
Query: 554 IRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKH 613
L +E + +IK T T R Y P F NKH
Sbjct: 605 AEL--------AEMSGMGRRETEEIKLWTTDTSDTYRAPYERRPFAHPRRFALIGTANKH 656
Query: 614 LFVRNPDDAWW-RRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLD 672
DA RR++ + ++PI W ++ ++ +
Sbjct: 657 ---ETNHDATGNRRFMPVFVNRPID------------------PNWHVEALQLFAEAKAR 695
Query: 673 VDIPE-----VCLKAKEEERQGTD 691
P+ + +A ++ D
Sbjct: 696 FVEPDGEYARLVRRASALVKEYND 719
>gi|167749501|ref|ZP_02421628.1| hypothetical protein EUBSIR_00457 [Eubacterium siraeum DSM 15702]
gi|167657529|gb|EDS01659.1| hypothetical protein EUBSIR_00457 [Eubacterium siraeum DSM 15702]
Length = 739
Score = 54.0 bits (128), Expect = 1e-04, Method: Composition-based stats.
Identities = 30/189 (15%), Positives = 67/189 (35%), Gaps = 28/189 (14%)
Query: 207 NREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEI--ARRWSKQGSTYDEEN 264
+ ++ L + S+ EW+ V MA+ +G + WS + Y +
Sbjct: 5 DFDLNEALKYISPS--DLSYQEWVNVGMALK------EEGYSVTVWDNWSANDNRYHKGE 56
Query: 265 FNYKWDTFDFEE---IGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKK 321
KW++F+ G T + + + + G R D ++ + + +
Sbjct: 57 CEKKWESFNGSSSPVTGATIVQMAKDRGMMF--------GTGEDRELDWDDEISYEHHDE 108
Query: 322 GHFLYTADTKAWYK-KDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNS 380
+ K W + K+ N W + I + L E+V + + E + K
Sbjct: 109 ----HVVVNKNWIEGKEINAPTDWQPHREII--RYLEALFEQSENVGYVVQSYEKDGKFI 162
Query: 381 KSPRFWFNT 389
+ + +++
Sbjct: 163 PANKGYYDR 171
>gi|309700534|emb|CBI99829.1| putative primase [Escherichia coli ETEC H10407]
Length = 782
Score = 54.0 bits (128), Expect = 1e-04, Method: Composition-based stats.
Identities = 45/337 (13%), Positives = 94/337 (27%), Gaps = 42/337 (12%)
Query: 431 EQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY--FESEEVMDYFTR 488
D + +L G ++P + +L+ + +EE Y +
Sbjct: 450 CPDDVFNLYEGLALEPIEGD---------------CTVYLNHLLQVVCAGNEEAYQYLIQ 494
Query: 489 CVGMALL-GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAG 547
+ + K I ++ V G+GK T + + G QY + + + R
Sbjct: 495 WMAHIIQKPDEKPSVAIVMKSVPGTGKGTTVKPLLQILG-QYAAHINGAGHISGRFNSI- 552
Query: 548 KANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPF 607
L +V E + A ++K + + P
Sbjct: 553 --------LANKLLVFADEVTIHKPSEADRLKAIISEPTFNLERKGIDA-EPMPNFARLI 603
Query: 608 IVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLET---KYTLEAKKWFLKGVK 664
N + R ++ P + + +L + W LKGV
Sbjct: 604 FASN---STQVLQAGIRERRYLVLEPSPEKAQSREYFDRLYSWLNDGGAAKLLWHLKGVD 660
Query: 665 AYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKS----YSE 720
G D +EE G + ++ E AK +
Sbjct: 661 L---SGFDPQRAPQTDALREEILLGLSGVELFLYGELINEPPFNGEVRLFAKDMVSRFVA 717
Query: 721 YREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIE 757
+ + ++ + + +L Q G + + ++
Sbjct: 718 WSLERGEKLKEPAARSLLGKSLAQMGLVKHGRPDRGN 754
>gi|300923441|ref|ZP_07139481.1| zinc-binding domain of primase-helicase [Escherichia coli MS 182-1]
gi|300420268|gb|EFK03579.1| zinc-binding domain of primase-helicase [Escherichia coli MS 182-1]
Length = 783
Score = 54.0 bits (128), Expect = 1e-04, Method: Composition-based stats.
Identities = 45/337 (13%), Positives = 94/337 (27%), Gaps = 42/337 (12%)
Query: 431 EQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY--FESEEVMDYFTR 488
D + +L G ++P + +L+ + +EE Y +
Sbjct: 451 CPDDVFNLYEGLALEPIEGD---------------CTVYLNHLLQVVCAGNEEAYQYLIQ 495
Query: 489 CVGMALL-GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAG 547
+ + K I ++ V G+GK T + + G QY + + + R
Sbjct: 496 WMAHIIQKPDEKPSVAIVMKSVPGTGKGTTVKPLLQILG-QYAAHINGAGHISGRFNSI- 553
Query: 548 KANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPF 607
L +V E + A ++K + + P
Sbjct: 554 --------LANKLLVFADEVTIHKPSEADRLKAIISEPTFNLERKGIDA-EPMPNFARLI 604
Query: 608 IVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLET---KYTLEAKKWFLKGVK 664
N + R ++ P + + +L + W LKGV
Sbjct: 605 FASN---STQVLQAGIRERRYLVLEPSPEKAQSREYFDRLYSWLNDGGAAKLLWHLKGVD 661
Query: 665 AYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKS----YSE 720
G D +EE G + ++ E AK +
Sbjct: 662 L---SGFDPQRAPQTDALREEILLGLSGVELFLYGELINEPPFNGEVRLFAKDMVSRFVA 718
Query: 721 YREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIE 757
+ + ++ + + +L Q G + + ++
Sbjct: 719 WSLERGEKLKEPAARSLLGKSLAQMGLVKHGRPDRGN 755
>gi|237703427|ref|ZP_04533908.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
gi|226902691|gb|EEH88950.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
gi|315285444|gb|EFU44889.1| zinc-binding domain of primase-helicase [Escherichia coli MS 110-3]
gi|323954803|gb|EGB50583.1| hypothetical protein ERLG_03795 [Escherichia coli H263]
Length = 783
Score = 54.0 bits (128), Expect = 1e-04, Method: Composition-based stats.
Identities = 45/337 (13%), Positives = 94/337 (27%), Gaps = 42/337 (12%)
Query: 431 EQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY--FESEEVMDYFTR 488
D + +L G ++P + +L+ + +EE Y +
Sbjct: 451 CPDDVFNLYEGLALEPIEGD---------------CTVYLNHLLQVVCAGNEEAYQYLIQ 495
Query: 489 CVGMALL-GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAG 547
+ + K I ++ V G+GK T + + G QY + + + R
Sbjct: 496 WMAHIIQKPDEKPSVAIVMKSVPGTGKGTTVKPLLQILG-QYAAHINGAGHISGRFNSI- 553
Query: 548 KANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPF 607
L +V E + A ++K + + P
Sbjct: 554 --------LANKLLVFADEVTIHKPSEADRLKAIISEPTFNLERKGIDA-EPMPNFARLI 604
Query: 608 IVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLET---KYTLEAKKWFLKGVK 664
N + R ++ P + + +L + W LKGV
Sbjct: 605 FASN---STQVLQAGIRERRYLVLEPSPEKAQSREYFDRLYSWLNDGGAAKLLWHLKGVD 661
Query: 665 AYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKS----YSE 720
G D +EE G + ++ E AK +
Sbjct: 662 L---SGFDPQRAPQTDALREEILLGLSGVELFLYGELINEPPFNGEVRLFAKDMVSRFVA 718
Query: 721 YREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIE 757
+ + ++ + + +L Q G + + ++
Sbjct: 719 WSLERGEKLKEPAARSLLGKSLAQMGLVKHGRPDRGN 755
>gi|255011106|ref|ZP_05283232.1| hypothetical protein Bfra3_18337 [Bacteroides fragilis 3_1_12]
gi|313148914|ref|ZP_07811107.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
gi|313137681|gb|EFR55041.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
Length = 719
Score = 54.0 bits (128), Expect = 1e-04, Method: Composition-based stats.
Identities = 36/150 (24%), Positives = 59/150 (39%), Gaps = 14/150 (9%)
Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542
+ V AL G Q+ + + G G GKST I++ R
Sbjct: 436 RRWIVAMVASALQPGKANQQALVLHGAQGKGKST---WIRHLL--------PPELGEYYR 484
Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDE-INAAKIKQMTGGDCMTARLNYGNTYSESP 601
AN + L+ +R++I E E + + A++K++ G + +T R Y P
Sbjct: 485 NGMIDPANKDDLLLLSTRLLINMEEFEGVKTGDIAELKRIIGQENVTIRKVYDTQAQLYP 544
Query: 602 ASFTPFIVPNKHLFVRNPDDAWWRRYIVIP 631
+ N F+R D RR++VIP
Sbjct: 545 RRASFIGSTNNMQFLR--DYGGNRRFLVIP 572
>gi|292491084|ref|YP_003526523.1| hypothetical protein Nhal_0963 [Nitrosococcus halophilus Nc4]
gi|291579679|gb|ADE14136.1| conserved hypothetical protein [Nitrosococcus halophilus Nc4]
Length = 231
Score = 53.6 bits (127), Expect = 1e-04, Method: Composition-based stats.
Identities = 36/225 (16%), Positives = 70/225 (31%), Gaps = 33/225 (14%)
Query: 455 STGTPFVEGE-PSQEFLDLVSGYFE-----SEEVMDYFTRCVGMALLGGNKAQRF---IH 505
T P Q L L+ S+E++D+ + + + N + +
Sbjct: 15 ITDWPTQPKAGNCQSLLKLLDHLCSRENHSSDELLDWVLKWLAYPI--QNPGAKMRTALV 72
Query: 506 IRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIIS 565
I G G+GK+ I +G Y + S + A K +I+
Sbjct: 73 IHGPQGTGKNLFFECIMQIYGR-YGRIIDQSAVEDKFNDWASK----------KLFIIVD 121
Query: 566 E-TNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWW 624
E N +D K+K++ + + + Y E F + V DD
Sbjct: 122 EVVNRSDSYIENKLKEIVTNEWILINSKGVDAYEERNHVNMVFFSNERMPVVLEEDD--- 178
Query: 625 RRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISK 669
RR+ +I + + + ++ + Y+
Sbjct: 179 RRHCII---WTPEKLPKAVYDDVAAEIRDGG----VEALHHYLLN 216
>gi|91783159|ref|YP_558365.1| putative DNA replication primase protein [Burkholderia xenovorans
LB400]
gi|91687113|gb|ABE30313.1| Putative DNA replication primase protein [Burkholderia xenovorans
LB400]
Length = 620
Score = 53.6 bits (127), Expect = 1e-04, Method: Composition-based stats.
Identities = 13/73 (17%), Positives = 24/73 (32%), Gaps = 6/73 (8%)
Query: 199 NNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGS 258
A L+ + ++ W+ + A+ +G EI WS+ +
Sbjct: 1 MTAPYVDEANRARAALAVIPAD----DYETWVDMAFALKQGF--GDEGFEIWDAWSRTAA 54
Query: 259 TYDEENFNYKWDT 271
YDE W +
Sbjct: 55 NYDERAARTTWRS 67
>gi|11467115|ref|NP_054416.1| hypothetical protein MapooMp19 [Marchantia polymorpha]
gi|586768|sp|P38463|YMF20_MARPO RecName: Full=Uncharacterized mitochondrial protein ymf20; AltName:
Full=ORF167
gi|786200|gb|AAC09413.1| ORF167 [Marchantia polymorpha]
Length = 167
Score = 53.6 bits (127), Expect = 1e-04, Method: Composition-based stats.
Identities = 25/106 (23%), Positives = 44/106 (41%), Gaps = 6/106 (5%)
Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
++I+ + + + A ++Q+ GGD ++ +L + N E S IV N++L +
Sbjct: 1 MLIVVNDSPFYKGDTAILRQLVGGDRISCKLKHANVRHEFSYSGWVLIVGNEYLGMSETS 60
Query: 621 DAWWRRYIVIP------FDKPIANRDASFAQKLETKYTLEAKKWFL 660
A RR IV P K + + + E KW L
Sbjct: 61 GALARRMIVFPARNAVHLKKFLIKEEHGLFMGPLAEEISEIAKWAL 106
>gi|329313069|gb|AEB87482.1| bacteriophage resistance protein [Staphylococcus aureus subsp.
aureus T0131]
Length = 538
Score = 53.6 bits (127), Expect = 1e-04, Method: Composition-based stats.
Identities = 40/265 (15%), Positives = 86/265 (32%), Gaps = 33/265 (12%)
Query: 435 ILDLETGQKVKP---TKELYITKS-TGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCV 490
+ D + + + ELY K + E + F DLV+ ++E+ +
Sbjct: 195 VYDCQNLTLTEQKLKSDELYSIKYDVDIKDINLEIPRNFFDLVT---DNEKSKNNLMLTH 251
Query: 491 GMALLGGNK---AQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAG 547
+ K A+++ ++ G SGK M + V ++ A
Sbjct: 252 AYTMYRKMKLIQAEKWFLLKDFGRSGKGLFMATFEKLM---TVNKVNFDSLISGGFESA- 307
Query: 548 KANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPF 607
+ G+ I +ET E + ++++ G+ ++ R N ++ +
Sbjct: 308 ---NEWMNFYGADIAHANETGEITKQMMRILRKIATGETISGRGIGRNAFTFK-NNAVLI 363
Query: 608 IVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYI 667
+ N+ + R I+ +D + E +Y + W YI
Sbjct: 364 LDTNESVDTGEITANTTR-------TVKISLKDRPINETDEERYQIFKPYW------DYI 410
Query: 668 SKGLDVDIPEVC--LKAKEEERQGT 690
++ + L A E +
Sbjct: 411 QPNGNISVSASVSFLIASLEYLKEN 435
>gi|74229767|ref|YP_308971.1| viral helicase [Trichoplusia ni SNPV]
gi|72259681|gb|AAZ67452.1| viral helicase [Trichoplusia ni SNPV]
Length = 1217
Score = 53.6 bits (127), Expect = 1e-04, Method: Composition-based stats.
Identities = 31/187 (16%), Positives = 67/187 (35%), Gaps = 35/187 (18%)
Query: 486 FTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544
G ++ + + + I++ G GSGKS+ L++Y + + +
Sbjct: 901 VMMHFGASMGIPSDYEKCCIYLNGKPGSGKSSFFELLEYIV--VVHKHDSDKYTLSKKDT 958
Query: 545 EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQ---MTGGDCMTARLNYGNTYSESP 601
+A+ + +L +I+E + + K T + + + Y
Sbjct: 959 NEMEADKMISQLY-----VINEMK---VCDDSFFKSTADSTKSNSVCRKFQGSQKYE--- 1007
Query: 602 ASFTPFIVPNKHLFVRNPDDAWWRRYIVI----------PFDK----PIANR----DASF 643
A++ IV NK L + + D R+ V+ PF+ I N+ + ++
Sbjct: 1008 ANYKLLIVNNKPLHISDYDKGVRNRFAVVYTDHLFEENLPFNGSIYWHIKNKLYPMEKNY 1067
Query: 644 AQKLETK 650
+ L
Sbjct: 1068 NEDLAKP 1074
>gi|256006172|ref|ZP_05431087.1| Bifunctional DNA primase/polymerase [Clostridium thermocellum DSM
2360]
gi|255989866|gb|EEU00033.1| Bifunctional DNA primase/polymerase [Clostridium thermocellum DSM
2360]
Length = 222
Score = 53.6 bits (127), Expect = 1e-04, Method: Composition-based stats.
Identities = 33/184 (17%), Positives = 49/184 (26%), Gaps = 29/184 (15%)
Query: 4 MQWKEQAKQAIHNGFKLIPLR-----------------LGDKRPQRLGKWEEQLLSSEKI 46
M + A + +IPL K P G ++ E+I
Sbjct: 3 MTMMDAAIKYAEANIPVIPLHWICEDGSCSCKAGSDCDSKGKHPLYTGWYKNSTTDVEQI 62
Query: 47 DKL----PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKI 102
K P G G L D+D ++T + + T L T G
Sbjct: 63 KKWWTKTPNANIGIPTGEKSGWLV-LDVDDGGDETLSALEATHGKLPDTVTAVTGS---G 118
Query: 103 LIPFRMNKEGIKKKKTTESTQGHLDILGCGQYF-VAYNIHPKTKKEYTW--TTPPHRFKV 159
+ + LD G VA +IH + Y W P
Sbjct: 119 GRHYVFIYPKGRSIPNKTKFAPGLDTRSTGGLIAVAPSIHV-SGNRYEWIKDHSPFDRTP 177
Query: 160 EDTP 163
+ P
Sbjct: 178 AEAP 181
>gi|261492426|ref|ZP_05988982.1| phage DNA primase-like protein [Mannheimia haemolytica serotype A2
str. BOVINE]
gi|261496392|ref|ZP_05992786.1| phage DNA primase-like protein [Mannheimia haemolytica serotype A2
str. OVINE]
gi|261307977|gb|EEY09286.1| phage DNA primase-like protein [Mannheimia haemolytica serotype A2
str. OVINE]
gi|261311885|gb|EEY13032.1| phage DNA primase-like protein [Mannheimia haemolytica serotype A2
str. BOVINE]
Length = 187
Score = 53.6 bits (127), Expect = 1e-04, Method: Composition-based stats.
Identities = 23/179 (12%), Positives = 53/179 (29%), Gaps = 16/179 (8%)
Query: 606 PFIVPNKHLF-VRNPDDAWWRRYIVIPFDK--PIANRDASFAQKLETKYTLEAKKWFLKG 662
F+ N RR ++ FD+ PI RD + K++ + +
Sbjct: 4 VFMTTNNTPILFTENSGGTERRRVIFKFDRIVPIEERDFNLIDKIQAETG-GIIRLLFDT 62
Query: 663 VKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDC--------CDIGENLWEESHS- 713
+ ++ + + + + + + +G +L +
Sbjct: 63 FPEPLEAKALLEK-QRVSQEALAVKMEVNHVLEFAQEFEILPTVNGLAMGSSLNNGTRDS 121
Query: 714 -LAKSYSEYREQEL-NYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLK 770
+ +Y + + +R TR LK+ RE + + I L+
Sbjct: 122 AIYPAYIYFCQLNDIEPINRRTFTRAFKQALKELDKGEYQTRESNGRTVTNVHYIDKLR 180
>gi|281426086|ref|ZP_06256999.1| conserved hypothetical protein [Prevotella oris F0302]
gi|281399810|gb|EFB30641.1| conserved hypothetical protein [Prevotella oris F0302]
Length = 396
Score = 53.6 bits (127), Expect = 1e-04, Method: Composition-based stats.
Identities = 31/192 (16%), Positives = 59/192 (30%), Gaps = 25/192 (13%)
Query: 467 QEFLDLVSGYFESE-EV-MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524
L+ F + E+ MDY L K + + +GKST +N +K
Sbjct: 89 PHIESLIRHIFGEQYELGMDYLQLLY---LQPVQKLPILLMVSEERNTGKSTFLNFLKAV 145
Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGG 584
F V D G ++++ E N ++ ++K ++
Sbjct: 146 F-QNNVTFNTNEDFRSQFN----------ADWAGKLLIVVDEVLLNRREDSERLKNLSTT 194
Query: 585 DCMTARLNYGNTYSESPASFTPFIVPNK--HLFVRNPDD-AWWRRYIVIPFDKPIANRDA 641
+ E + N + + + +W R I + + D
Sbjct: 195 LSYKVEAKGKDR-DEISFFAKFVLCSNNELLPVIIDVGETRYWVRKI-----NRLESDDT 248
Query: 642 SFAQKLETKYTL 653
F QKL+ +
Sbjct: 249 DFLQKLKAEIPA 260
>gi|290959765|ref|YP_003490947.1| hypothetical protein SCAB_53671 [Streptomyces scabiei 87.22]
gi|260649291|emb|CBG72406.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
Length = 301
Score = 53.6 bits (127), Expect = 1e-04, Method: Composition-based stats.
Identities = 34/172 (19%), Positives = 52/172 (30%), Gaps = 29/172 (16%)
Query: 17 GFKLIPLRLGDKRPQRLGKW----------------EEQLLSSEKIDKLPACG-FGFVCG 59
G+ +IPLR K P G+ + L +I++ + G F
Sbjct: 20 GWPVIPLRPRSKVPALHGERRCPHSGDCAGGHRTFEQRATLDPARIERCWSSGPFNVGIA 79
Query: 60 VGEQPLYAFDIDSKD-------EKTANTFKDTFEILHGT-PIVRIGQKPKILIPFRMNKE 111
G L D+D+ A F+ E T P R + P
Sbjct: 80 TGPAGLLVVDLDTLKPTDEAGTPDGAANFQALCERAGHTVPATRRIRTPSGGEHLYFTAP 139
Query: 112 -GIKKKKTTESTQGHLDILGCGQYFVAYN-IHPKTKKEYTWTTPPHRFKVED 161
G++ TT + +D G VA I P YT + +
Sbjct: 140 SGVRFANTTGTLTPKVDTRAWGGQVVAPGSITPH--GPYTVLDDQPVANLSE 189
>gi|209551736|ref|YP_002283653.1| hypothetical protein Rleg2_4165 [Rhizobium leguminosarum bv.
trifolii WSM2304]
gi|209537492|gb|ACI57427.1| hypothetical protein Rleg2_4165 [Rhizobium leguminosarum bv.
trifolii WSM2304]
Length = 842
Score = 53.6 bits (127), Expect = 1e-04, Method: Composition-based stats.
Identities = 29/165 (17%), Positives = 54/165 (32%), Gaps = 11/165 (6%)
Query: 146 KEYTWTTPPHR--FKVEDTPLLSEEDVEYL-FKFFQEITVPLVKDKKSIIPSKTWTNNNN 202
W H +++E+D + E + D+ P + N
Sbjct: 230 HPMRWPGSWHTKTTSARMCKIVAEDDFAEIDLDVAAEALQAALVDRGLQTPGSPAAPSAN 289
Query: 203 RQYTNREITA-FLSCFGEEFYNGS--HDEWIPVVMAVHHETRGSSKGKEIARRWSKQGST 259
T + + L NG DEW + M + + G G E WS++ +
Sbjct: 290 GFKTEKAWSEIALLDAARIIPNGDLGWDEWNRIGMIFYDASHGDVAGLEAFLSWSEKSAK 349
Query: 260 YDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLA 304
+DE +WD + + + + +L + K+ P L
Sbjct: 350 HDEVAAEARWDHYSSSPPNNLSDR-----TLLFEMRKVDPLYTLP 389
>gi|317050595|ref|YP_004111711.1| AAA ATPase central domain-containing protein [Desulfurispirillum
indicum S5]
gi|316945679|gb|ADU65155.1| AAA ATPase central domain protein [Desulfurispirillum indicum S5]
Length = 699
Score = 53.6 bits (127), Expect = 2e-04, Method: Composition-based stats.
Identities = 41/212 (19%), Positives = 76/212 (35%), Gaps = 21/212 (9%)
Query: 445 KPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFI 504
+ E TG P +F + F E++ + T+ G L G N I
Sbjct: 201 EGDAEDICHSITGNPLQANLRWSDFEHMA---FTREKLERFLTQAAGKRLKGVN-----I 252
Query: 505 HIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLI-RLM---GSR 560
I G G+GK+ + + AE+ + ++ +L RL G +
Sbjct: 253 LIYGPPGTGKTEFCKTLAQRLKMELYAVAESDSGGEEPTRRERISSYNLCQRLFANNGGK 312
Query: 561 IVIISETNENDEINAAKIKQMTGGDCM--TARLNYGNTYSESPASFTPFIVPNKHLFVRN 618
+++ E + D + + + G ++ Y N E T +I+ N V+
Sbjct: 313 LLLFDEID--DLFDMSPFAGLFGISPKGRSSSKVYMNRMLEENPVPTFWIINN----VQL 366
Query: 619 PDDAWWRRYIV-IPFDKPIANRDASFAQKLET 649
D++ RR + I P AN +++
Sbjct: 367 LDESIVRRMSLAIEMPNPPANMRKKLWRRIIR 398
>gi|237713494|ref|ZP_04543975.1| conserved hypothetical protein [Bacteroides sp. D1]
gi|262407279|ref|ZP_06083827.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|229446476|gb|EEO52267.1| conserved hypothetical protein [Bacteroides sp. D1]
gi|262354087|gb|EEZ03179.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
Length = 400
Score = 53.2 bits (126), Expect = 2e-04, Method: Composition-based stats.
Identities = 33/195 (16%), Positives = 63/195 (32%), Gaps = 31/195 (15%)
Query: 467 QEFLDLVSGYFESE-EV-MDYFTRCVGMALLGGNKAQRFIHIR---GVGGSGKSTLMNLI 521
+ + L+ F + E+ MDY A Q+ + +GK+T +N +
Sbjct: 91 PDIMKLIHHIFGEQYELGMDYMQLL--YA----KPTQKLPILLLVSEERNTGKTTFLNFL 144
Query: 522 KYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM 581
K F V D G ++++ E ++ ++K +
Sbjct: 145 KAVF-EDNVTFNTNEDFRSQFN----------ADWAGKLLIVVDEVLLCRREDSERLKNL 193
Query: 582 TGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDA---WWRRYIVIPFDKPIAN 638
+ + E + N LF D +W R I+ P+ +
Sbjct: 194 STAQTYKVEAKGKDR-QEVNFFAKFVLCSNNELFPVIIDTGETRYWVRKIM-----PLES 247
Query: 639 RDASFAQKLETKYTL 653
D +F QKL+ +
Sbjct: 248 DDTNFLQKLKAQIPA 262
>gi|123231276|ref|XP_001286273.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121851479|gb|EAX73343.1| hypothetical protein TVAG_347600 [Trichomonas vaginalis G3]
Length = 261
Score = 53.2 bits (126), Expect = 2e-04, Method: Composition-based stats.
Identities = 40/255 (15%), Positives = 78/255 (30%), Gaps = 28/255 (10%)
Query: 495 LGGNKAQRFIHIRGVGGSGKSTLM-NLIKYAF-GNQYVINAEASDIMQNRPPEAGKANPS 552
+ K + + I G G+GK+T +++ G +I
Sbjct: 12 IPSAKNETALIIIGKQGTGKNTFFTDILCKLLEGYSNPNMTNLENICGKFNSSIEN---- 67
Query: 553 LIRLMGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609
++++ +E D +N+ +K + Y + + +
Sbjct: 68 ------MKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVS 121
Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISK 669
N D RRY+V+ +D + L T +
Sbjct: 122 NNAVPMKLESSD---RRYVVVR-TSEAHMQDTEYFDALSETLTSDFYNHLFSYFMTLDIS 177
Query: 670 GLDVD-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNY 728
+ IP + E + Y+ +ID+ + + SL SY +Y ++ Y
Sbjct: 178 KFNPRQIPHTEERQTLLEANKS-VYELFIDET----DFECLDERSLYDSYKQYCQE---Y 229
Query: 729 DRKRISTRTVTLNLK 743
S RT N+K
Sbjct: 230 GYMTASKRTFLANVK 244
>gi|315607215|ref|ZP_07882219.1| conserved hypothetical protein [Prevotella buccae ATCC 33574]
gi|315251269|gb|EFU31254.1| conserved hypothetical protein [Prevotella buccae ATCC 33574]
Length = 396
Score = 53.2 bits (126), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/192 (15%), Positives = 60/192 (31%), Gaps = 25/192 (13%)
Query: 467 QEFLDLVSGYFESE-EV-MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524
L+ F + E+ +DY L K + + +GKST +N +K
Sbjct: 89 PHIESLIRHIFGEQYELGIDYLQLLY---LQPVQKLPILLMVSEERNTGKSTFLNFLKAV 145
Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGG 584
F V D G ++++ E N ++ ++K ++
Sbjct: 146 F-QNNVTFNTNEDFRSQFN----------ADWAGKLLIVVDEVLLNRREDSERLKNLSTT 194
Query: 585 DCMTARLNYGNTYSESPASFTPFIVPNK--HLFVRNPDD-AWWRRYIVIPFDKPIANRDA 641
+ E + N + + + +W R I + + + D
Sbjct: 195 LSYKVEAKGKDR-DEISFFAKFVLCSNNELLPVIIDVGETRYWVRKI-----ERLKSDDT 248
Query: 642 SFAQKLETKYTL 653
F QKL+ +
Sbjct: 249 DFLQKLKAEIPA 260
>gi|160897071|ref|YP_001562653.1| primase 2 [Delftia acidovorans SPH-1]
gi|160362655|gb|ABX34268.1| Primase 2 [Delftia acidovorans SPH-1]
Length = 309
Score = 53.2 bits (126), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/95 (16%), Positives = 30/95 (31%), Gaps = 8/95 (8%)
Query: 207 NREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFN 266
I L + + WI MA+ E S G ++ WS++ +Y+ +
Sbjct: 2 TDRIRNALQYLN----HDDREVWIMAGMAIKAEIGES--GFDLWDEWSRRADSYNPKAAR 55
Query: 267 YKWDTFDFEE--IGDTAKKRSTFTSLFYHHGKLIP 299
W +F +G + + P
Sbjct: 56 ASWRSFRGSGVTVGSLFHEATAAGWTPRDDVAFQP 90
>gi|298249361|ref|ZP_06973165.1| helix-turn-helix domain protein [Ktedonobacter racemifer DSM 44963]
gi|297547365|gb|EFH81232.1| helix-turn-helix domain protein [Ktedonobacter racemifer DSM 44963]
Length = 393
Score = 53.2 bits (126), Expect = 2e-04, Method: Composition-based stats.
Identities = 22/108 (20%), Positives = 42/108 (38%), Gaps = 5/108 (4%)
Query: 664 KAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYRE 723
+ Y+ G P+ + + G DT W+ C E W + + SY+ + E
Sbjct: 286 QWYLRVGQGPHPPQAVHHLPQTQLSGQDTVGWWLAACGKRVERAWVANSEIMISYANWCE 345
Query: 724 QELNYDRKRISTRTVTLNLKQKGFIGGIKREKI--EKEWKSKRIIKGL 769
+K + V+ +L G G+ + + + K R ++GL
Sbjct: 346 AHGYEPKKA---KGVSQSLATHGLEIGVNKRVVDEHRRRKMARGVRGL 390
>gi|123328427|ref|XP_001293761.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121870948|gb|EAX80831.1| hypothetical protein TVAG_173510 [Trichomonas vaginalis G3]
Length = 270
Score = 53.2 bits (126), Expect = 2e-04, Method: Composition-based stats.
Identities = 43/276 (15%), Positives = 81/276 (29%), Gaps = 29/276 (10%)
Query: 476 YFESEEVMDYFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLM-NLIKYAF-GNQYVIN 532
+E+V +Y L K + + I G G+GK+T +++ G
Sbjct: 1 MHGNEKVYEYILCWFANILQYPSAKNETALIIIGKQGTGKNTFFTDILCKLLEGYSNPNM 60
Query: 533 AEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEND---EINAAKIKQMTGGDCMTA 589
+I ++++ +E D +N+ +K +
Sbjct: 61 TNLENICGKFNSSIEN----------MKLIVCNELQSIDTTKVLNSDALKSLITDKVGVV 110
Query: 590 RLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLET 649
Y ++ + + N D RRY+V+ +D + L
Sbjct: 111 ERKYKDSRVCENVANFIMVSNNVVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAE 166
Query: 650 KYTLEAKKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLW 708
T + + IP + E + Y+ +ID+
Sbjct: 167 TLTSDFYNHLFSYFMTLDISKFNPRQIPYTEERQTLLEANKS-VYELFIDETNF------ 219
Query: 709 EESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQ 744
E Y EY++ Y S RT N+K
Sbjct: 220 -ECLDERSLYDEYKQYCQEYGYMTASKRTFLANVKN 254
>gi|284023385|ref|ZP_06377783.1| bacteriophage resistance protein [Staphylococcus aureus subsp.
aureus 132]
Length = 537
Score = 53.2 bits (126), Expect = 2e-04, Method: Composition-based stats.
Identities = 30/226 (13%), Positives = 70/226 (30%), Gaps = 26/226 (11%)
Query: 470 LDLVSGYFESEEVMDYFTRCVGMALLGGNK---AQRFIHIRGVGGSGKSTLMNLIKYAFG 526
+ ++E+ + + K A+++ ++ G SGK M +
Sbjct: 231 RNFFDLVTDNEKSKNNLMLTHAYTMYRKMKLIQAEKWFLLKDFGRSGKGLFMATFEKLM- 289
Query: 527 NQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDC 586
V ++ A + G+ I +ET E + ++++ G+
Sbjct: 290 --TVNKVNFDSLISGGFESA----NEWMNFYGADIAHANETGEITKQMMRILRKIATGET 343
Query: 587 MTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQK 646
++ R N ++ + + N+ + R I+ +D +
Sbjct: 344 ISGRGIGRNAFTFK-NNAVLILDTNESVDTGEITANTTR-------TVKISLKDRPINET 395
Query: 647 LETKYTLEAKKWFLKGVKAYISKGLDVDIPEVC--LKAKEEERQGT 690
E +Y + W YI ++ + L A E +
Sbjct: 396 DEERYQIFKPYW------DYIQPNGNISVSASVSFLIASLEYLKEN 435
>gi|307566128|ref|ZP_07628586.1| conserved hypothetical protein [Prevotella amnii CRIS 21A-A]
gi|307345316|gb|EFN90695.1| conserved hypothetical protein [Prevotella amnii CRIS 21A-A]
Length = 396
Score = 53.2 bits (126), Expect = 2e-04, Method: Composition-based stats.
Identities = 34/194 (17%), Positives = 62/194 (31%), Gaps = 28/194 (14%)
Query: 468 EFLD---LVSGYFESE-EV-MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIK 522
EFL L+ F + E+ MDY L K + + +GKST +N +K
Sbjct: 87 EFLHIESLIRHIFGEQYELGMDYLQLLY---LQPVQKLPILLMVSEERNTGKSTFLNFLK 143
Query: 523 YAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMT 582
F V D G ++++ E N ++ ++K ++
Sbjct: 144 AVF-QNNVTFNTNEDFRSQFN----------ADWAGKLLIVVDEVLLNRREDSERLKNLS 192
Query: 583 GGDCMTARLNYGNTYSESPASFTPFIVPNK--HLFVRNPDD-AWWRRYIVIPFDKPIANR 639
+ E + N + + + +W R I + +
Sbjct: 193 TTLSYKVEAKGKDR-DEISFFAKFVLCSNNELLPVIIDMGETRYWVRKI-----NRLESD 246
Query: 640 DASFAQKLETKYTL 653
D F QKL+ +
Sbjct: 247 DTDFLQKLKAEIPA 260
>gi|327541459|gb|EGF27997.1| Bifunctional DNA primase/polymerase [Rhodopirellula baltica WH47]
Length = 339
Score = 53.2 bits (126), Expect = 2e-04, Method: Composition-based stats.
Identities = 49/291 (16%), Positives = 90/291 (30%), Gaps = 35/291 (12%)
Query: 8 EQAKQAIHNGFKLIPLRL-GDKRP--QRLGKWEEQLLSSEKIDKLPA--CGFGFVCGVGE 62
+ A+ + G +IPL+ G K P ++ ++ + +++ + G G VCGV
Sbjct: 29 DLARAYVSAGVSVIPLKTDGTKAPALASWNEYRKRFAADDELRRWFRRPAGIGLVCGVQS 88
Query: 63 QPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKIL----IPFRMNKEGIKKK-- 116
L D DE T + +IL + R+ +P+R K
Sbjct: 89 NGLEVLD---FDEDPVETMLEWAKILPEGLLDRLTIVATGGGGFHVPYRCESVTGNTKIA 145
Query: 117 ---KTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYL 173
+ + D A +H + K Y W T + P +S ++ + +
Sbjct: 146 MAAEGGVLIESRGDGGYVVGVGSATRVH-SSGKSY-WQTAGE--PLPSLPTVSADERKLM 201
Query: 174 FKFFQEIT--VPLVKDKKSIIPSKTWTNNNNRQYTN-------REITAFLSCFGEEFYNG 224
+ E+ + ++ T + L G NG
Sbjct: 202 WMAAAELDERPDAADEFVRKRRAQLRPLTKPDSDTPWGAFDESADWREILEPAGWTTTNG 261
Query: 225 SHDEWIPVV--MAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYK-WDTF 272
H W ++ G EI +S E ++ W F
Sbjct: 262 KH--WTRAGKTFGTSAVLGTANNGNEILTVFSTNAGELSVEGTGHRNWGKF 310
>gi|125974515|ref|YP_001038425.1| hypothetical protein Cthe_2020 [Clostridium thermocellum ATCC
27405]
gi|125714740|gb|ABN53232.1| hypothetical protein Cthe_2020 [Clostridium thermocellum ATCC
27405]
Length = 263
Score = 53.2 bits (126), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/180 (17%), Positives = 49/180 (27%), Gaps = 29/180 (16%)
Query: 8 EQAKQAIHNGFKLIPLR-----------------LGDKRPQRLGKWEEQLLSSEKIDKL- 49
+ A + +IPL K P G ++ E+I K
Sbjct: 2 DAALKYAEANIPVIPLHWICEDGSCSCKEGSNCDSKGKHPLYTGWYKNSTAYVEQIRKWW 61
Query: 50 ---PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPF 106
P G G L D+D ++T + + T L T G +
Sbjct: 62 TKTPNANIGIPTGEKSDWLV-LDVDDGGDETISALEATHGKLPDTVTAVTGS---GGWHY 117
Query: 107 RMNKEGIKKKKTTESTQGHLDILGCGQ-YFVAYNIHPKTKKEYTWTT--PPHRFKVEDTP 163
+ LD G VA +IH + +Y W P + P
Sbjct: 118 VFKYPKGRSIPNKTKFASGLDTRSTGGLIVVAPSIHV-SGNQYQWLEGHSPFDRTPAEAP 176
>gi|154416640|ref|XP_001581342.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121915568|gb|EAY20356.1| hypothetical protein TVAG_193320 [Trichomonas vaginalis G3]
Length = 263
Score = 53.2 bits (126), Expect = 2e-04, Method: Composition-based stats.
Identities = 40/252 (15%), Positives = 76/252 (30%), Gaps = 28/252 (11%)
Query: 499 KAQRFIHIRGVGGSGKSTLM-NLIKYAF-GNQYVINAEASDIMQNRPPEAGKANPSLIRL 556
K + + I G G+GK+T +++ G +I
Sbjct: 18 KNETALIIIGKQGTGKNTFFTDILCKLLEGYSNPNMTNLENICGKFNSSIEN-------- 69
Query: 557 MGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKH 613
++++ +E D +N+ +K + Y + + + N
Sbjct: 70 --MKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAV 127
Query: 614 LFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDV 673
D RRY+V+ +D + L T + +
Sbjct: 128 PMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNP 183
Query: 674 D-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKR 732
IP + E + Y+ +ID+ + SL SY +Y ++ Y
Sbjct: 184 RQIPHTEERQTLLEANKS-VYELFIDETNFECLDER----SLYDSYKQYCQE---YGYMT 235
Query: 733 ISTRTVTLNLKQ 744
S RT N+K
Sbjct: 236 ASKRTFLANVKN 247
>gi|125975306|ref|YP_001039216.1| hypothetical protein Cthe_2824 [Clostridium thermocellum ATCC
27405]
gi|125715531|gb|ABN54023.1| hypothetical protein Cthe_2824 [Clostridium thermocellum ATCC
27405]
Length = 263
Score = 53.2 bits (126), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/181 (17%), Positives = 50/181 (27%), Gaps = 29/181 (16%)
Query: 8 EQAKQAIHNGFKLIPLR-----------------LGDKRPQRLGKWEEQLLSSEKIDKL- 49
+ A + +IPL K P G ++ E+I K
Sbjct: 2 DAALKYAEANIPVIPLHWICEDGSCSCKEGSNCDSKGKHPLYTGWYKNSTAYVEQIRKWW 61
Query: 50 ---PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPF 106
P G G L D+D ++T + + T L T G +
Sbjct: 62 TKTPNANIGIPTGEKSDWLV-LDVDDGGDETISALEATHGKLPDTVTAVTGS---GGWHY 117
Query: 107 RMNKEGIKKKKTTESTQGHLDILGCGQ-YFVAYNIHPKTKKEYTWTT--PPHRFKVEDTP 163
+ LD G VA +IH + +Y W P + + P
Sbjct: 118 VFKYPKGRSIPNKTKFASGLDTRSTGGLIVVAPSIHV-SGNQYQWLEGHSPFDRTLAEAP 176
Query: 164 L 164
Sbjct: 177 E 177
>gi|147677729|ref|YP_001211944.1| hypothetical protein PTH_1394 [Pelotomaculum thermopropionicum SI]
gi|146273826|dbj|BAF59575.1| hypothetical protein [Pelotomaculum thermopropionicum SI]
Length = 645
Score = 53.2 bits (126), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/168 (16%), Positives = 53/168 (31%), Gaps = 21/168 (12%)
Query: 36 WEEQLLSSEKIDKL----PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGT 91
++ + + +++ + P C + V G + + D+D + + + K
Sbjct: 53 YQRRRPTRDEVTQWRGKYPGCNWAVVTGKVSE-VVVLDMDGPEGEASLRGKHIPPTW--- 108
Query: 92 PIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWT 151
+VR G+ G + T G +DI G G Y VA + K+Y W
Sbjct: 109 -MVRTGK----GRHIYFQWPGFPVECRTGILPG-VDIRGDGGYVVAPGSVHVSGKKYGWV 162
Query: 152 TPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTN 199
D P + + + P I P +
Sbjct: 163 DG---LSPADMPE--PAEAPAWL--VELLKRPGGNSSSKIDPVRVLAG 203
>gi|293402156|ref|ZP_06646294.1| RecA-family ATPase [Erysipelotrichaceae bacterium 5_2_54FAA]
gi|291304263|gb|EFE45514.1| RecA-family ATPase [Erysipelotrichaceae bacterium 5_2_54FAA]
Length = 735
Score = 53.2 bits (126), Expect = 2e-04, Method: Composition-based stats.
Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 7/73 (9%)
Query: 206 TNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQ-GSTYDEEN 264
+ ++ L + + W+ V MA+ HE ++ WS + S Y ++
Sbjct: 3 HDTDLIELLKYIDPS--SLDYQSWVNVGMALKHEGYSAAD----WDAWSMKDASRYHKDE 56
Query: 265 FNYKWDTFDFEEI 277
KWDTF I
Sbjct: 57 CFKKWDTFKGTGI 69
>gi|261881017|ref|ZP_06007444.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
gi|270332245|gb|EFA43031.1| conserved hypothetical protein [Prevotella bergensis DSM 17361]
Length = 396
Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats.
Identities = 33/192 (17%), Positives = 63/192 (32%), Gaps = 25/192 (13%)
Query: 467 QEFLDLVSGYFESE-EV-MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524
L+S F + E+ MDY L K + + +GKST +N +K
Sbjct: 89 PHVESLISHIFGEQYELGMDYLQLLY---LQPVQKLPILLMVSEERNTGKSTFLNFLKAV 145
Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGG 584
F + V D + N G ++++ E N ++ ++K ++
Sbjct: 146 F-HNNVTFNTNEDFR-------SQFNSDWA---GKLLIVVDEVLLNRREDSERLKNLSTT 194
Query: 585 DCMTARLNYGNTYSESPASFTPFIVPNK--HLFVRNPDD-AWWRRYIVIPFDKPIANRDA 641
+ E + N + + + +W R I + + D
Sbjct: 195 LSYKVEAKGKDR-DEISFFAKFVLCSNNELLPVIIDVGETRYWVRKI-----NRLESDDT 248
Query: 642 SFAQKLETKYTL 653
F QKL+ +
Sbjct: 249 DFLQKLKAEIPA 260
>gi|123184264|ref|XP_001281067.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121834842|gb|EAX68137.1| hypothetical protein TVAG_597950 [Trichomonas vaginalis G3]
Length = 258
Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats.
Identities = 40/251 (15%), Positives = 77/251 (30%), Gaps = 28/251 (11%)
Query: 499 KAQRFIHIRGVGGSGKSTLM-NLIKYAF-GNQYVINAEASDIMQNRPPEAGKANPSLIRL 556
K + + I G G+GK+T +++ G +I
Sbjct: 13 KNETALIIIGKQGTGKNTFFTDILCKLLEGYSNPNMTNLENICGKFNSSIEN-------- 64
Query: 557 MGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKH 613
++++ +E D +N+ +K + Y + + + N
Sbjct: 65 --MKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAV 122
Query: 614 LFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDV 673
D RRY+V+ +D + L T + +
Sbjct: 123 PMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNP 178
Query: 674 D-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKR 732
IP + E + Y+ +ID+ + + SL SY +Y ++ Y
Sbjct: 179 RQIPHTEERQTLLEANKS-VYELFIDET----DFECLDERSLYDSYKQYCQE---YGYMT 230
Query: 733 ISTRTVTLNLK 743
S RT N+K
Sbjct: 231 ASKRTFLANVK 241
>gi|288928586|ref|ZP_06422433.1| conserved hypothetical protein [Prevotella sp. oral taxon 317 str.
F0108]
gi|288331420|gb|EFC70004.1| conserved hypothetical protein [Prevotella sp. oral taxon 317 str.
F0108]
Length = 415
Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats.
Identities = 29/192 (15%), Positives = 60/192 (31%), Gaps = 25/192 (13%)
Query: 467 QEFLDLVSGYFESE-EV-MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524
L F + E+ MDY L K + + +GKST +N +K
Sbjct: 106 PHIEALARHIFGEQYELGMDYLQLLY---LYPIEKLPILLLVSEERNTGKSTFLNFLKAL 162
Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGG 584
FGN N + N G ++++ E + ++ ++K ++
Sbjct: 163 FGNNVTFNTNEDF--------RSQFNSDWA---GKLLILVDEALLDRREDSERLKNLSTT 211
Query: 585 DCMTARLNYGNTYSESPASFTPFIVPNK--HLFVRNPDD-AWWRRYIVIPFDKPIANRDA 641
+ E + N + + + +W R + I D
Sbjct: 212 LSYKVEAKGKDR-DEISFFAKFVLCSNNERLPVIIDAGETRYWVRKV-----GRIEKDDT 265
Query: 642 SFAQKLETKYTL 653
F ++++ +
Sbjct: 266 DFLKRIKEEIPA 277
>gi|224541910|ref|ZP_03682449.1| hypothetical protein CATMIT_01083 [Catenibacterium mitsuokai DSM
15897]
gi|224525144|gb|EEF94249.1| hypothetical protein CATMIT_01083 [Catenibacterium mitsuokai DSM
15897]
Length = 748
Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/129 (20%), Positives = 41/129 (31%), Gaps = 13/129 (10%)
Query: 210 ITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQ-GSTYDEENFNYK 268
+ L+ S+ EW V MA+ HE +S WS Q Y K
Sbjct: 6 LLELLNYINPS--ELSYQEWTNVGMALKHEGYEASD----WDSWSSQDSERYKRGECFTK 59
Query: 269 WDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASR----FSDAYNKAMFSIYKKGHF 324
W++F+ E GD T G + PK + + + D +
Sbjct: 60 WNSFN-ETAGDIVTG-GTIFDYAKKGGFVPPKKIDPNEGVLDWDDEIGNIIDKDSIDSIE 117
Query: 325 LYTADTKAW 333
L+ W
Sbjct: 118 LHEPSDSIW 126
>gi|307546785|ref|YP_003899264.1| hypothetical protein HELO_4195 [Halomonas elongata DSM 2581]
gi|307218809|emb|CBV44079.1| hypothetical protein HELO_4195 [Halomonas elongata DSM 2581]
Length = 345
Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats.
Identities = 13/70 (18%), Positives = 21/70 (30%), Gaps = 6/70 (8%)
Query: 205 YTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEEN 264
T E+ L + + W+ V A E G WS+Q +Y +
Sbjct: 6 LTFDELRLALQYIPAD----DRETWVNVGNACKTEY--GDDGFAAWDEWSQQAESYKAAD 59
Query: 265 FNYKWDTFDF 274
W +
Sbjct: 60 AKSVWRSLTP 69
>gi|300939256|ref|ZP_07153935.1| zinc-binding domain of primase-helicase [Escherichia coli MS 21-1]
gi|300455855|gb|EFK19348.1| zinc-binding domain of primase-helicase [Escherichia coli MS 21-1]
Length = 783
Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats.
Identities = 45/337 (13%), Positives = 94/337 (27%), Gaps = 42/337 (12%)
Query: 431 EQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY--FESEEVMDYFTR 488
D + +L G ++P + +L+ + +EE Y +
Sbjct: 451 CPDDVFNLYEGLALEPIEGD---------------CTVYLNHLLQAVCAGNEEAYQYLIQ 495
Query: 489 CVGMALL-GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAG 547
+ + K I ++ V G+GK T + + G QY + + + R
Sbjct: 496 WMAHIIQKPDEKPSVAIVMKSVPGTGKGTTVKPLLQILG-QYAAHINGAGHISGRFNSI- 553
Query: 548 KANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPF 607
L +V E + A ++K + + P
Sbjct: 554 --------LANKLLVFADEVTIHKPSEADRLKAIISEPTFNLERKGIDA-EPMPNFARLI 604
Query: 608 IVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLET---KYTLEAKKWFLKGVK 664
N + R ++ P + + +L + W LKGV
Sbjct: 605 FASN---STQVLQAGIRERRYLVLEPSPEKAQSREYFDRLYSWLNDGGAAKLLWHLKGVD 661
Query: 665 AYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKS----YSE 720
G D +EE G + ++ E AK +
Sbjct: 662 L---SGFDPQRAPQTDALREEILLGLSGVELFLYGELINEPPFNGEVRLFAKDMVSRFVA 718
Query: 721 YREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIE 757
+ + ++ + + +L Q G + + ++
Sbjct: 719 WSLERGEKLKEPAARSLLGKSLAQMGLVKHGRPDRGN 755
>gi|182436697|ref|YP_001824416.1| hypothetical protein SGR_2904 [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|178465213|dbj|BAG19733.1| hypothetical protein [Streptomyces griseus subsp. griseus NBRC
13350]
Length = 294
Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats.
Identities = 32/158 (20%), Positives = 46/158 (29%), Gaps = 26/158 (16%)
Query: 8 EQAKQAIHNGFKLIPLRLGDKRP---------------QRLGKWEEQLLSSEKIDK--LP 50
A A G+ + PLR DKRP KWE++ + +
Sbjct: 6 NAALDAAERGWHVFPLRPADKRPALHGETACSGTGDCAGGHRKWEQRATTDPDRIRAAWS 65
Query: 51 ACGFGFVCGVGEQPLYAFDID---SKDEKTANT----FKDTFEILHGTPIV--RIGQKPK 101
A F G L D+D +KD K + E T R
Sbjct: 66 AGAFNVGLATGPSGLVVVDLDPVKAKDPKGTPDGVTSLQALCERAGQTVPATYRTRTASG 125
Query: 102 ILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYN 139
+ G++ + H+D G Y VA
Sbjct: 126 GHHLYFTAPPGVRLGNSAGRLGKHIDTRAHGGYVVAAG 163
>gi|303236684|ref|ZP_07323265.1| conserved hypothetical protein [Prevotella disiens FB035-09AN]
gi|302483188|gb|EFL46202.1| conserved hypothetical protein [Prevotella disiens FB035-09AN]
Length = 396
Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats.
Identities = 31/192 (16%), Positives = 63/192 (32%), Gaps = 25/192 (13%)
Query: 467 QEFLDLVSGYFESE-EV-MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524
L+S F + E+ MDY L K + + +GKST +N +K
Sbjct: 89 PHVESLISHIFGEQYELGMDYLQLLY---LQPVQKLPILLMVSEERNTGKSTFLNFLKAV 145
Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGG 584
F + + + N G ++++ E N ++ ++K ++
Sbjct: 146 F--------QNNVTFNTNEDFRSQFNSDWA---GKLLIVVDEVLLNRREDSERLKNLSTT 194
Query: 585 DCMTARLNYGNTYSESPASFTPFIVPNK--HLFVRNPDD-AWWRRYIVIPFDKPIANRDA 641
+ E + N + + + +W R I + + + D
Sbjct: 195 LSYKVEAKGKDR-DEISFFAKFVLCSNNELLPVIIDVGETRYWVRKI-----ERLKSDDT 248
Query: 642 SFAQKLETKYTL 653
F QKL+ +
Sbjct: 249 DFLQKLKAEIPA 260
>gi|282848866|ref|ZP_06258256.1| primase C-terminal domain protein [Veillonella parvula ATCC 17745]
gi|282581371|gb|EFB86764.1| primase C-terminal domain protein [Veillonella parvula ATCC 17745]
Length = 693
Score = 52.8 bits (125), Expect = 2e-04, Method: Composition-based stats.
Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 11/67 (16%)
Query: 209 EITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGK--EIARRWSK-QGSTYDEENF 265
++ L S++EW+ V +A+H +G I WS G + E
Sbjct: 6 DLRELLEYIDPA--QCSYEEWLNVGLALHQ------EGYPMFIWEEWSADDGERFHEGEC 57
Query: 266 NYKWDTF 272
KW++F
Sbjct: 58 AAKWESF 64
>gi|327312672|ref|YP_004328109.1| hypothetical protein HMPREF9137_0377 [Prevotella denticola F0289]
gi|326944557|gb|AEA20442.1| conserved hypothetical protein [Prevotella denticola F0289]
Length = 396
Score = 52.8 bits (125), Expect = 3e-04, Method: Composition-based stats.
Identities = 29/192 (15%), Positives = 59/192 (30%), Gaps = 25/192 (13%)
Query: 467 QEFLDLVSGYFESE-EV-MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524
L+ F + E+ +DY L K + + +GKST +N +K
Sbjct: 89 PHIESLIHHIFGEQYELGIDYLQLLY---LQPVQKLPILLMVSEERNTGKSTFLNFLKAV 145
Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGG 584
F V D G ++++ E N ++ ++K ++
Sbjct: 146 F-QNNVTFNTNEDFRSQFN----------ADWAGKLLIVVDEVLLNRREDSERLKNLSTT 194
Query: 585 DCMTARLNYGNTYSESPASFTPFIVPNK--HLFVRNPDD-AWWRRYIVIPFDKPIANRDA 641
+ E + N + + + +W R I + + D
Sbjct: 195 LSYKVEAKGKDR-DEISFFAKFVLCSNNELLPVIIDVGETRYWVRKI-----NSLESDDT 248
Query: 642 SFAQKLETKYTL 653
F +KL+ +
Sbjct: 249 DFLRKLKAEIPA 260
>gi|123206387|ref|XP_001284914.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121847375|gb|EAX71984.1| hypothetical protein TVAG_568990 [Trichomonas vaginalis G3]
Length = 263
Score = 52.8 bits (125), Expect = 3e-04, Method: Composition-based stats.
Identities = 40/252 (15%), Positives = 77/252 (30%), Gaps = 28/252 (11%)
Query: 499 KAQRFIHIRGVGGSGKSTLM-NLIKYAF-GNQYVINAEASDIMQNRPPEAGKANPSLIRL 556
K + + I G G+GK+T +++ G +I
Sbjct: 18 KNETALIIIGKQGTGKNTFFTDILCKLLEGYSNPNMTNLENICGKFNSSIEN-------- 69
Query: 557 MGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKH 613
++++ +E D +N+ +K + Y + + + N
Sbjct: 70 --MKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFVMVSNNAV 127
Query: 614 LFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDV 673
D RRY+V+ +D + L T + +
Sbjct: 128 PMKLESSD---RRYVVVR-TSEAHMQDTEYFDALSETLTSDFYNHLFSYFMTLDISKFNP 183
Query: 674 D-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKR 732
IP + E + Y+ +ID+ + + SL SY +Y ++ Y
Sbjct: 184 RQIPHTEERQTLLEANKS-VYELFIDET----DFECLDERSLYDSYKQYCQE---YGYMT 235
Query: 733 ISTRTVTLNLKQ 744
S RT N+K
Sbjct: 236 ASKRTFLANVKN 247
>gi|256841206|ref|ZP_05546713.1| conserved hypothetical protein [Parabacteroides sp. D13]
gi|256737049|gb|EEU50376.1| conserved hypothetical protein [Parabacteroides sp. D13]
Length = 415
Score = 52.4 bits (124), Expect = 3e-04, Method: Composition-based stats.
Identities = 31/187 (16%), Positives = 61/187 (32%), Gaps = 25/187 (13%)
Query: 472 LVSGYFESE-EV-MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529
LV F + E+ MDY L K + + +GKST +N +K F
Sbjct: 113 LVQHIFGEQYELGMDYLQLLY---LQPIQKLPILLLVSEERNTGKSTFLNFLKALF---- 165
Query: 530 VINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTA 589
+ + + N G ++++ E N ++ ++K ++
Sbjct: 166 ----QNNVTFNTNEDFRSQFNSDWA---GKLLIVVDEVLLNRREDSERLKNLSTTLSYKV 218
Query: 590 RLNYGNTYSESPASFTPFIVPN--KHLFVRNPDD-AWWRRYIVIPFDKPIANRDASFAQK 646
+ E + N + + + +W R I + + D F QK
Sbjct: 219 EAKGKDR-DEIAFFAKFVLCSNNEHLPVIIDAGETRYWVRKI-----NRLQSDDTDFLQK 272
Query: 647 LETKYTL 653
L+ +
Sbjct: 273 LKAEIPA 279
>gi|261879032|ref|ZP_06005459.1| hypothetical protein HMPREF0645_0431 [Prevotella bergensis DSM
17361]
gi|270334365|gb|EFA45151.1| hypothetical protein HMPREF0645_0431 [Prevotella bergensis DSM
17361]
Length = 396
Score = 52.4 bits (124), Expect = 3e-04, Method: Composition-based stats.
Identities = 38/264 (14%), Positives = 90/264 (34%), Gaps = 37/264 (14%)
Query: 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMG 558
+ + + G G K+T ++L+ + + ++ L+G
Sbjct: 141 RNHTCLVLTGEQGKFKTTFLDLLC-----------PPALSDYRYTGKIYPQEKDVLSLIG 189
Query: 559 SRIVIISE--TNENDEINAAKIKQMTGGDCMTARLNYGNTYSESP--ASFTPFIVPNKHL 614
++I + ++ + ++K + + R+ Y E P ASF + N L
Sbjct: 190 QNLIINIDDQLKALNKRDENELKNLITCPQVKYRMPYEKHIEERPHLASFVASVNGNDFL 249
Query: 615 FVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD 674
RR+ +PF+ + D++ A ++ Y AK+ +G + + +
Sbjct: 250 TDPTGS----RRF--LPFEVLAIDIDSAKAIPMDAVYGD-AKRLLHEGFRYW------FN 296
Query: 675 IPEVCL-----KAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYD 729
E+ +A + + + + + SE Y
Sbjct: 297 DEEIVELHRNSEAFQVYTAEMELLLRY----FTFPSEAEMATKRFYMTNSEIVGYLSCYT 352
Query: 730 RKRISTRTVTLNLKQKGFIGGIKR 753
R+ +S + + L++ G+ +R
Sbjct: 353 RQPLSPKRMGEALRKAGYTRECRR 376
>gi|227496702|ref|ZP_03926977.1| bifunctional DNA primase/polymerase [Actinomyces urogenitalis DSM
15434]
gi|226833799|gb|EEH66182.1| bifunctional DNA primase/polymerase [Actinomyces urogenitalis DSM
15434]
Length = 290
Score = 52.4 bits (124), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/174 (16%), Positives = 50/174 (28%), Gaps = 17/174 (9%)
Query: 7 KEQAKQAIHNGFKLIPLRLGDKRP-------QRLGKWEEQLLSSEKIDKLPACGFGFVCG 59
+E A G++++P R + ++ P G V
Sbjct: 6 REAATAYAVAGWQVLPCHPAGDRAKSPMLTHGFKDASTSPEAVAAWWEQWPTALIGLVV- 64
Query: 60 VGEQPLYAFDIDSKD-EKTANT---FKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKK 115
DID ++ E+ +N D L T G+ + +
Sbjct: 65 --PPGAVVVDIDPRNLEEGSNPSTVLDDLTGPLPDTLTSWSGRG-DGGRHLWFAAPALPE 121
Query: 116 KKTTESTQGHLDIL--GCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSE 167
+ + +D+ G G + HP T + Y W + P LS
Sbjct: 122 GRRWRNPAPGVDVKSPGRGYVIAPPSPHPATGQPYRWQDTATGYARLPLPALSA 175
>gi|226306821|ref|YP_002766781.1| hypothetical protein RER_33340 [Rhodococcus erythropolis PR4]
gi|226185938|dbj|BAH34042.1| hypothetical protein RER_33340 [Rhodococcus erythropolis PR4]
Length = 290
Score = 52.4 bits (124), Expect = 3e-04, Method: Composition-based stats.
Identities = 38/247 (15%), Positives = 76/247 (30%), Gaps = 30/247 (12%)
Query: 2 PVMQWKEQAKQAIHNGFKLIPLRLGDKRP-QRLGKWEEQLLSSEKIDKLP-ACGFGFVCG 59
P + + A +G+ + PL DK P + +I+K G +
Sbjct: 18 PAGPFAQHAPALAADGWSVFPLVPRDKVPFAGSHGHRDATTDRTQIEKWTRTHADGNIGL 77
Query: 60 VGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTT 119
+ + DIDS A + L T +VR + + +
Sbjct: 78 RPDVGMLVVDIDSA-ALLAPWMNERGLSLPPTRVVRTNRGSHYYYAHSSERPLLAAIPG- 135
Query: 120 ESTQGHLDILGCGQYFVAYNIHPKTKKEY-TWTTPPHRFKVEDTPLLSEEDVEYLFKFFQ 178
+D+ + +A K+ + Y W P + + P ++ +
Sbjct: 136 ------VDLKTEKGFVLAPGSIHKSGRIYRVWRDLP----IAELPA----------EWLK 175
Query: 179 EITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHH 238
I P K + P T + + ++ L+ S+ + + A +
Sbjct: 176 HIQRPEPKPR---PPVVTRSGGPSVGTPGLQLVRLLAVKRPGDGRRSYYQ-FCIGAA-YR 230
Query: 239 ETRGSSK 245
+ GSS
Sbjct: 231 DYGGSSD 237
>gi|301312248|ref|ZP_07218165.1| conserved hypothetical protein [Bacteroides sp. 20_3]
gi|300829670|gb|EFK60323.1| conserved hypothetical protein [Bacteroides sp. 20_3]
Length = 396
Score = 52.4 bits (124), Expect = 3e-04, Method: Composition-based stats.
Identities = 35/192 (18%), Positives = 67/192 (34%), Gaps = 23/192 (11%)
Query: 466 SQEFLDLVSGYFESE-EV-MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKY 523
Q L + F E+ +DY + K + + +GKST +NL+K
Sbjct: 88 CQVTLGFIRHIFGEHYELGLDYMQLLY---MKPITKLPILVLVSKENNTGKSTFLNLLKM 144
Query: 524 AFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTG 583
FG N + AN +I + + + + +T ++ A ++ G
Sbjct: 145 IFGKNMTFNTNEDF---RSQFNSDWANKLIIGVDETLLNRMEDTERIKNLSTAFTYKIEG 201
Query: 584 GDCMTARLNYGNTYSESPASFTPFIVPN--KHLFVRNPDDAWWRRYIVIPFDKPIANRDA 641
A + + + N L++ + +W R I P+ N D
Sbjct: 202 KGKDRAEIEFFGKFVF--------CSNNEENALYISPGETRFWVRKI-----HPLTNGDP 248
Query: 642 SFAQKLETKYTL 653
F +KL+++
Sbjct: 249 LFLRKLKSEIPA 260
>gi|83717727|ref|YP_440202.1| DNA primase [Burkholderia thailandensis E264]
gi|83651552|gb|ABC35616.1| DNA primase [Burkholderia thailandensis E264]
Length = 955
Score = 52.4 bits (124), Expect = 3e-04, Method: Composition-based stats.
Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 2/49 (4%)
Query: 224 GSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTF 272
D W MA+ E +G + WS+ Y+ + W +F
Sbjct: 22 DDRDTWRHAGMALKAEF--GEEGFALWNEWSQGAQNYNARDTRDVWKSF 68
>gi|323340042|ref|ZP_08080308.1| RecA-family ATPase [Lactobacillus ruminis ATCC 25644]
gi|323092548|gb|EFZ35154.1| RecA-family ATPase [Lactobacillus ruminis ATCC 25644]
Length = 769
Score = 52.4 bits (124), Expect = 3e-04, Method: Composition-based stats.
Identities = 20/97 (20%), Positives = 33/97 (34%), Gaps = 10/97 (10%)
Query: 208 REITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGS-TYDEENFN 266
++ L ++ W+ V MA+ HE WS++ S Y +
Sbjct: 4 FDLVPLLDYIDPAML--DYNGWVQVGMALKHEGYSVDD----WDTWSQRDSARYHDGECE 57
Query: 267 YKWDTFDFEE---IGDTAKKRSTFTSLFYHHGKLIPK 300
KW+ FD + G T K + H K +
Sbjct: 58 RKWNGFDDDGQIVTGATITKMAKDGGWTSAHSKENQQ 94
>gi|167736508|ref|ZP_02409282.1| hypothetical protein Bpse14_00515 [Burkholderia pseudomallei 14]
Length = 953
Score = 52.4 bits (124), Expect = 3e-04, Method: Composition-based stats.
Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 2/49 (4%)
Query: 224 GSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTF 272
D W MA+ E +G + WS+ Y+ ++ W +F
Sbjct: 17 DDRDTWRQAGMALKAEF--GEEGFTLWNEWSQGAQNYNAKDARDVWKSF 63
>gi|288932397|ref|YP_003436457.1| Bifunctional DNA primase/polymerase [Ferroglobus placidus DSM
10642]
gi|288894645|gb|ADC66182.1| Bifunctional DNA primase/polymerase [Ferroglobus placidus DSM
10642]
Length = 882
Score = 52.4 bits (124), Expect = 3e-04, Method: Composition-based stats.
Identities = 44/249 (17%), Positives = 85/249 (34%), Gaps = 39/249 (15%)
Query: 9 QAKQAIHNGFKLIPLRL-----GDKRPQRLGKWEEQ---LLSSEKIDKLPAC-------- 52
A++ + GF +IP+ L G R L W++ + E++
Sbjct: 7 AAEEYLREGFSVIPVALIRLPDGRSRKPALVDWKKYQLSPPTLEEVRSWFENPEQFEAIR 66
Query: 53 -----GFGFVCGVGEQPLYAFDIDSKD------EKTANTFKDTFEILHGTPIVRIGQKPK 101
G V G L D D+++ + + + +E T +V G+
Sbjct: 67 KGNKIGIAIVTGSVSGNLAVIDFDNREVLSDFLAELYESDSNLYEKFINTWVVETGK--- 123
Query: 102 ILIPF--RMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKV 159
+ R+ K + +DI G + VA + K+Y + P
Sbjct: 124 -GFHYYLRVKDPDPKLFHNRIGIREGIDIRAEGGFVVAPPSPHPSGKQYRFVNKP----- 177
Query: 160 EDTPLLSEEDVEYLFKFFQ-EITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFG 218
E LS E+ L + + T+P + I + T+ + R+ + EI ++
Sbjct: 178 EKIAELSWEEYLTLLRILERNETLPEEGLTEEISAKDSLTSKDERELSESEILEIVNLLK 237
Query: 219 EEFYNGSHD 227
+ G +
Sbjct: 238 PIYRPGFRN 246
Score = 43.6 bits (101), Expect = 0.14, Method: Composition-based stats.
Identities = 32/159 (20%), Positives = 57/159 (35%), Gaps = 25/159 (15%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRI-- 561
+ + G +GKSTL +I+ N E G ++ + G +
Sbjct: 541 LLLHGSASTGKSTLGKIIRAI------WNLPPE--------EKGGSHIDTVPRFGKVVSE 586
Query: 562 ----VIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVR 617
V+I+E E ++ + + + + AR Y + +P I
Sbjct: 587 STFPVLINEVAEVLAKDSIREVLKSSIETLFARGRYVQGVYVEEPALSPMIFTTNK--AY 644
Query: 618 NPDDAWWRRYIVIPFDKPIANR-DASFAQKLETKYTLEA 655
DDA RR+I I F I++R A++ E +
Sbjct: 645 PADDALLRRFIGILFT--ISDRVKEDKAREFEREVLPRI 681
>gi|257140828|ref|ZP_05589090.1| DNA primase [Burkholderia thailandensis E264]
Length = 950
Score = 52.4 bits (124), Expect = 3e-04, Method: Composition-based stats.
Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 2/49 (4%)
Query: 224 GSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTF 272
D W MA+ E +G + WS+ Y+ + W +F
Sbjct: 17 DDRDTWRHAGMALKAEF--GEEGFALWNEWSQGAQNYNARDTRDVWKSF 63
>gi|134291212|ref|YP_001114981.1| putative DNA replication primase protein [Burkholderia
vietnamiensis G4]
gi|134134401|gb|ABO58726.1| putative DNA replication primase protein [Burkholderia
vietnamiensis G4]
Length = 620
Score = 52.4 bits (124), Expect = 3e-04, Method: Composition-based stats.
Identities = 12/79 (15%), Positives = 23/79 (29%), Gaps = 6/79 (7%)
Query: 199 NNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGS 258
+ A L+ + + W+ + A+ +G EI WS+
Sbjct: 1 MTTPYVHDVDRARAALAVIPAD----DYGTWVDMAFALKQGF--GDEGFEIWDAWSRTAP 54
Query: 259 TYDEENFNYKWDTFDFEEI 277
Y+E W +
Sbjct: 55 NYNERAARTTWRSASASGG 73
>gi|83645646|ref|YP_434081.1| hypothetical protein HCH_02881 [Hahella chejuensis KCTC 2396]
gi|83633689|gb|ABC29656.1| uncharacterized protein conserved in bacteria [Hahella chejuensis
KCTC 2396]
Length = 823
Score = 52.4 bits (124), Expect = 3e-04, Method: Composition-based stats.
Identities = 48/324 (14%), Positives = 101/324 (31%), Gaps = 55/324 (16%)
Query: 447 TKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYF-----------TRCVGMAL- 494
+ +I G P S+ + E++ + + + +
Sbjct: 474 DPKTHINIFEGLPHKPSPRSEFW-----RCDSIRELIKWLCNDDVDVVDWVMKWLAYPIQ 528
Query: 495 -LGGNKAQRFIHIRGVGGSGKST-LMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS 552
+G + V GSGKS ++ + +G + + +
Sbjct: 529 NVGAKMDTALMFHSDVHGSGKSLLFADICRQLYGKYAAV--------LGQHQLESQYTDW 580
Query: 553 LIRLMGSRIVIISETNENDEI--NAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVP 610
RL+ + E D+ + IK M G + + + E+ F+
Sbjct: 581 RDRLL---FAVFEEVLSRDQKYAHLGTIKHMITGKTQRIEKKFVSGWEEANHMNCIFLSN 637
Query: 611 NKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKG----VKAY 666
F P D RR++V+ + + A+ + L+ + E + ++ + AY
Sbjct: 638 EFQPFPLEPSD---RRFLVV-WPR------ATLPEHLQQLVSNEMENGGIEAFYGYLLAY 687
Query: 667 ISKGLDVDIPEVCLKAKEEERQ-----GTDTYQAWIDDCCDIGENLWEESHSLAKSYSEY 721
+KG + + K YQAW D + + L + Y +
Sbjct: 688 NTKGFNEHTKPLMTDDKARLIHFGLSGTELFYQAW-RDGLLEAPYMSCITTDLYEVYKRW 746
Query: 722 REQELNYDRKRISTRTVTLNLKQK 745
+E + ++ +L L K
Sbjct: 747 CSREGE---RSLTQTKFSLLLSVK 767
>gi|323138608|ref|ZP_08073675.1| Bifunctional DNA primase/polymerase [Methylocystis sp. ATCC 49242]
gi|322396096|gb|EFX98630.1| Bifunctional DNA primase/polymerase [Methylocystis sp. ATCC 49242]
Length = 721
Score = 52.4 bits (124), Expect = 3e-04, Method: Composition-based stats.
Identities = 38/238 (15%), Positives = 68/238 (28%), Gaps = 38/238 (15%)
Query: 13 AIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPA---CGFGFVCGVGEQPLYAFD 69
I G+ IP+ K P G W + +S+++ + C G G L D
Sbjct: 33 YIERGWSPIPISFRSKAPSLPG-WTDLRISADEASRYFNGAPCNIGVALGEVSGGLVDVD 91
Query: 70 IDSKDEKTAN-TFKDTFEILHGTPIVRIGQKPKILIPFRMNK------------EGIKKK 116
+D ++ A F + G R + N + I K+
Sbjct: 92 LDCREAIAAAPYFLQKTAAIFGRETARASH-----WLYYTNSASVNLSANVYFDDPIAKE 146
Query: 117 KTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTW----TTPPHRFKVEDTPLLSEEDVEY 172
+ ++ L + Q + H T + W P R + +D E
Sbjct: 147 RGAKARLVDLRLGPKVQTVFPGSAHEDTSEPIAWEPGCDGEPARVECDDLLRRVERLAAC 206
Query: 173 LF------------KFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFG 218
+ LV+ S SK + R + ++ F +
Sbjct: 207 SLLARHWPAHGARHDARLAVGGVLVRAGFSESESKLFAEALARAVDDEDVRDFQAAIR 264
>gi|75908783|ref|YP_323079.1| virulence-associated E [Anabaena variabilis ATCC 29413]
gi|75702508|gb|ABA22184.1| Virulence-associated E [Anabaena variabilis ATCC 29413]
Length = 697
Score = 52.4 bits (124), Expect = 3e-04, Method: Composition-based stats.
Identities = 51/290 (17%), Positives = 86/290 (29%), Gaps = 50/290 (17%)
Query: 482 VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQN 541
V + V AL G KA + ++G G GK+T S +
Sbjct: 412 VRRWLVSAVARALNPGCKADCALVLQGKQGIGKTTFF-----------------SSLFGE 454
Query: 542 RPPEAGKANPSLIRLMGSRIVIISETNE----NDEINAAKIKQMTGGDCMTARLNYGNTY 597
G+ + +L+ E E + + IK + T R Y +
Sbjct: 455 SFQTLGEHKSDVDQLLAMTRSWCIEWGEIENAFSKKAVSAIKSFMSIERDTYRRPYASEP 514
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKK 657
P F N+ F+ + RR+ V+ D+ + D + +
Sbjct: 515 DTYPRHFVICGTTNQSEFLTDSTGN--RRFWVVNLDQRV---DTKAVEDMRDDVWSAVLA 569
Query: 658 WFLKGVKAYISKGLDVDIPEVCLKA---KEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
FL G + + +G E KA + Q + I
Sbjct: 570 LFLAG-ERWHLEG------EEVEKAAEDTAQYEQDNPWTEK-ITAYTARHNPCTVADIM- 620
Query: 715 AKSYSEYREQELNYDRKRISTR----TVTLNLKQKGFIGGIKREKIEKEW 760
E L +D +++ + VT L+Q G+ KR K
Sbjct: 621 --------ENALGFDVSKLNDKKAQGDVTAILRQLGYTKEQKRLNGVKAR 662
>gi|222530720|ref|YP_002574609.1| hypothetical protein Athe_2776 [Caldicellulosiruptor bescii DSM
6725]
gi|222457567|gb|ACM61828.1| hypothetical protein Athe_2776 [Caldicellulosiruptor bescii DSM
6725]
Length = 718
Score = 52.0 bits (123), Expect = 3e-04, Method: Composition-based stats.
Identities = 32/190 (16%), Positives = 64/190 (33%), Gaps = 14/190 (7%)
Query: 27 DKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFE 86
K+P + ++L E ++ A G+ +GE+ + DID D AN D +
Sbjct: 24 GKKPFLADWYYKELSDEELLEYW-AQGYNIGGKMGEKSCWMVDIDI-DHPAANKIVDLYL 81
Query: 87 ILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGH----LDILGCGQY-FVAYNIH 141
+ R KP + + K+ S Q ++I GQ + +IH
Sbjct: 82 PIDTLKFGR-ATKPLSHLLYFSENCKSLKRDFKFSNQTEKTTIVEIRSTGQQTMIPPSIH 140
Query: 142 PKTKKEYTWTT---PPHRFKVEDTPLLSEEDVEYL---FKFFQEITVPLVKDKKSIIPSK 195
P TK+E + P + + + + +++ +
Sbjct: 141 PDTKEELRFVGELKEPLKIEADLLTAAVNKIAAATLIGLHWYEGQRQDCALALAGGLLRA 200
Query: 196 TWTNNNNRQY 205
W+ ++
Sbjct: 201 GWSEEEAEKF 210
>gi|239905658|ref|YP_002952397.1| hypothetical protein DMR_10200 [Desulfovibrio magneticus RS-1]
gi|239795522|dbj|BAH74511.1| hypothetical protein [Desulfovibrio magneticus RS-1]
Length = 677
Score = 52.0 bits (123), Expect = 4e-04, Method: Composition-based stats.
Identities = 36/167 (21%), Positives = 51/167 (30%), Gaps = 26/167 (15%)
Query: 12 QAIHNGFKLIPL-----RLGD-----KRPQRLGK--WEEQLLSSEKIDKLPACGFGFVCG 59
+ + + F LIPL G KRP W Q + D P G CG
Sbjct: 28 EFLSDSFSLIPLVGGFPAPGQSSSEFKRPTEANWTKWCVQKRQFSRDDFSPERA-GVACG 86
Query: 60 VGEQPLYAFDIDSKDEKTANTFKDTF-----EILHGTPIVRIGQKPKILIPFRMNKEGIK 114
L D F++ E L T V+ G + F
Sbjct: 87 PASGVL------VLDVDDMGKFREWLAANVGEELPATLTVKTGGIGER-YHFYFQYPNDG 139
Query: 115 KKKTTESTQGHLDILGCGQYFVAYN-IHPKTKKEYTWTTPPHRFKVE 160
++ S + DI G G + +HP+T+K Y P
Sbjct: 140 QRYPNRSVKDVFDIRGVGGEVLCPGSLHPETRKPYIIVESPENLAPA 186
>gi|288926420|ref|ZP_06420341.1| conserved hypothetical protein [Prevotella buccae D17]
gi|288336793|gb|EFC75158.1| conserved hypothetical protein [Prevotella buccae D17]
Length = 396
Score = 52.0 bits (123), Expect = 4e-04, Method: Composition-based stats.
Identities = 32/191 (16%), Positives = 61/191 (31%), Gaps = 31/191 (16%)
Query: 471 DLVSGYFESE-EV-MDYFTRCVGMALLGGNKAQRFIHIR---GVGGSGKSTLMNLIKYAF 525
LVS F + E+ MDY Q+ + +GKST +N +K F
Sbjct: 93 ALVSHIFGEQYELGMDYLQLLY------LKPIQKLPILLLVSEERNTGKSTFLNFLKAIF 146
Query: 526 GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGD 585
V D G I+++ E N ++ ++K ++
Sbjct: 147 -KDNVTFNTNEDFRSQFN----------ADWAGKLIIVVDEVLLNRREDSERLKNLSTTH 195
Query: 586 CMTARLNYGNTYSESPASFTPFIVPNK--HLFVRNPDD-AWWRRYIVIPFDKPIANRDAS 642
+ + S + N + + + +W R I + + + D
Sbjct: 196 TYKVEAKGKDRSEIAFFS-KFVLCSNNEYLPLIIDMGETRYWVRKI-----EKLQSDDTD 249
Query: 643 FAQKLETKYTL 653
F +KL+ +
Sbjct: 250 FLKKLKEEIPA 260
>gi|300908390|ref|ZP_07125853.1| conserved hypothetical protein [Lactobacillus reuteri SD2112]
gi|300893797|gb|EFK87155.1| conserved hypothetical protein [Lactobacillus reuteri SD2112]
Length = 687
Score = 52.0 bits (123), Expect = 4e-04, Method: Composition-based stats.
Identities = 38/215 (17%), Positives = 72/215 (33%), Gaps = 25/215 (11%)
Query: 464 EPSQEFLDLVSGYFESE-EVMDYFTRCVGMALLGGN-KAQRFIHIRGVGGSGKSTLMNLI 521
E ++ + ++ + E + Y + + G K +RF + GV G+GK+ L +L+
Sbjct: 310 EEYKQVIQFLAHISGGKLEQLLYMLGFIPLQNTGIMAKVRRFFILLGVPGAGKTVLASLL 369
Query: 522 KYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRL----MGSRIVIISETNENDEINA-- 575
+ F + +S + +P+LI G + + + + NA
Sbjct: 370 EKIF--NNTQSNSSSILTSESNINKALTDPNLIDANDTKKGQLTLWFDDFQTDSQNNAIS 427
Query: 576 ----AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIP 631
I + G M+ + + S I N +R R V
Sbjct: 428 SKAGTAINGIISGKTMSGAAKFQQYHDVKLPS-LIVIATNALPQIRQV--GTADRMFVFD 484
Query: 632 FDKP------IANRDASFAQKLETKYTLEAKKWFL 660
+ I N DA A + K E + +
Sbjct: 485 CNTKLYDEVDIPNDDA--AAWINNKEVQEVMFYLI 517
>gi|227545540|ref|ZP_03975589.1| conserved hypothetical protein [Lactobacillus reuteri CF48-3A]
gi|227184477|gb|EEI64548.1| conserved hypothetical protein [Lactobacillus reuteri CF48-3A]
Length = 600
Score = 52.0 bits (123), Expect = 4e-04, Method: Composition-based stats.
Identities = 38/215 (17%), Positives = 72/215 (33%), Gaps = 25/215 (11%)
Query: 464 EPSQEFLDLVSGYFESE-EVMDYFTRCVGMALLGGN-KAQRFIHIRGVGGSGKSTLMNLI 521
E ++ + ++ + E + Y + + G K +RF + GV G+GK+ L +L+
Sbjct: 223 EEYKQVIQFLAHISGGKLEQLLYMLGFIPLQNTGIMAKVRRFFILLGVPGAGKTVLASLL 282
Query: 522 KYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRL----MGSRIVIISETNENDEINA-- 575
+ F + +S + +P+LI G + + + + NA
Sbjct: 283 EKIF--NNTQSNSSSILTSESNINKALTDPNLIDANDTKKGQLTLWFDDFQTDSQNNAIS 340
Query: 576 ----AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIP 631
I + G M+ + + S I N +R R V
Sbjct: 341 SKAGTAINGIISGKTMSGAAKFQQYHDVKLPS-LIVIATNALPQIRQV--GTADRMFVFD 397
Query: 632 FDKP------IANRDASFAQKLETKYTLEAKKWFL 660
+ I N DA A + K E + +
Sbjct: 398 CNTKLYDEVDIPNDDA--AAWINNKEVQEVMFYLI 430
>gi|53747893|emb|CAF05638.1| hypothetical protein [Angiococcus disciformis]
Length = 781
Score = 52.0 bits (123), Expect = 4e-04, Method: Composition-based stats.
Identities = 41/293 (13%), Positives = 92/293 (31%), Gaps = 46/293 (15%)
Query: 465 PSQEFLDLVSGYFESEEVMDYFTRC--VGMALLGG-NKAQRFIHIRGVGGSGKSTLMNLI 521
++EF+ +G + +++ V L G K G GK+T + +
Sbjct: 476 DAEEFIRATTGRLDPVDLVVVLHFIWQVKRKLFGKPVKDHLMPIFVGKQRGGKTTAIKSL 535
Query: 522 KYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM 581
G+ A+ + R L R G + E + + + + +K
Sbjct: 536 LQPLGDLVGFPADLQFLTDERQQ------FRLTRCYG---MFFDEMAKAERVASDVLKNR 586
Query: 582 TGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--R 639
+ + R+ N F+ +K +
Sbjct: 587 ITAERIEYRVLGVQ---------KLQTGTNNATFIGAS-------------NKQVKEIVV 624
Query: 640 DASFAQKLETKYTLEAKKW-FLKGV---KAYISKGLDVDIP----EVCLKAKEEERQGTD 691
D + ++ L W L+ + + S + P ++A+++E + D
Sbjct: 625 DPTGMRRFYQLDCLPQMNWTALEQIDFLAMWTSVDEKAESPLLGQLAQVQARQDEIRAKD 684
Query: 692 TYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQ 744
+ + + + C + W ++ +L Y E + + DR S +K+
Sbjct: 685 SVEDFFERRCAQRDQ-WIKATALYGHYVEDLKYQGR-DRMAFSLTKFGERMKE 735
>gi|218131551|ref|ZP_03460355.1| hypothetical protein BACEGG_03171 [Bacteroides eggerthii DSM 20697]
gi|217986483|gb|EEC52820.1| hypothetical protein BACEGG_03171 [Bacteroides eggerthii DSM 20697]
Length = 405
Score = 52.0 bits (123), Expect = 4e-04, Method: Composition-based stats.
Identities = 30/191 (15%), Positives = 63/191 (32%), Gaps = 25/191 (13%)
Query: 468 EFLDLVSGYFESE-EV-MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF 525
+ L+ FE + E+ +DY + K + + +GK+T +N +K F
Sbjct: 97 DIEKLLHHIFEEQYELGLDYMQLLY---MQPTQKLPILLLVSEERNTGKTTFLNFLKSIF 153
Query: 526 GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGD 585
D G ++++ E + ++ ++K ++
Sbjct: 154 -QDNATFNTNEDFRSQFN----------ADWAGKLLIVVDEVLLSRREDSERLKNLSTAQ 202
Query: 586 CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDA---WWRRYIVIPFDKPIANRDAS 642
+ E + N L+ D +W R I +P+ + D +
Sbjct: 203 TYKVEAKGKDR-QEVNFFAKFVLCSNNELYPVIIDPGENRYWVRKI-----RPLESDDTN 256
Query: 643 FAQKLETKYTL 653
F QKL+ +
Sbjct: 257 FLQKLKEQIPA 267
>gi|268608984|ref|ZP_06142711.1| Primase 2 [Ruminococcus flavefaciens FD-1]
Length = 743
Score = 52.0 bits (123), Expect = 4e-04, Method: Composition-based stats.
Identities = 20/104 (19%), Positives = 34/104 (32%), Gaps = 12/104 (11%)
Query: 205 YTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQ-GSTYDEE 263
Y N + L + +W + MA+ S + WS + + Y +
Sbjct: 3 YKNDNLEELLEYIDPS--ELDYQQWCGIGMALK----DSGYDGSVWDTWSMRDAARYHQG 56
Query: 264 NFNYKWDTFDFEE---IGDTAKKRSTFTSLFYHHGKLIPKGLLA 304
KW +F+ + T K + YH P +LA
Sbjct: 57 ECEKKWRSFNGSDTPVTAGTIVKMALDGG--YHPPSKAPDKVLA 98
>gi|328882523|emb|CCA55762.1| hypothetical protein SVEN_2476 [Streptomyces venezuelae ATCC 10712]
Length = 321
Score = 52.0 bits (123), Expect = 4e-04, Method: Composition-based stats.
Identities = 35/211 (16%), Positives = 56/211 (26%), Gaps = 30/211 (14%)
Query: 1 MPVMQWKEQAKQAIHNGFKLIPLRLGDKRPQRLGKW---------------EEQLLSSEK 45
+P + A A G+ + PLR DKRP E++ +
Sbjct: 19 LPGLGLLAHAVAAAERGWHVFPLRPHDKRPAGHSTARCPATGRCTAGHKTPEQRATTDVD 78
Query: 46 I--DKLPACGFGFVCGVGEQPLYAFDIDSKD-------EKTANTFKDTFEILHGTPIV-- 94
+ + G L D+D+ TF+ E +
Sbjct: 79 LLAAAWTHAPYNIGIATGPSGLLVVDLDTLKPTDEEGTPDGVTTFEALCERAGQAVPLTH 138
Query: 95 RIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPP 154
R+ + G + T H+D G G Y VA + P
Sbjct: 139 RVRTARGGQHLYFTQPTGHRLGNTAGRLGKHIDTRGWGGYVVAPGSTTADGAYEVLDSRP 198
Query: 155 HRFKVEDTPLLSEEDVEYLFKFFQEITVPLV 185
P + + + Q TVP
Sbjct: 199 ----PAPLPPWILDALTARPQPAQTATVPPA 225
>gi|217979219|ref|YP_002363366.1| virulence-associated E family protein [Methylocella silvestris BL2]
gi|217504595|gb|ACK52004.1| virulence-associated E family protein [Methylocella silvestris BL2]
Length = 413
Score = 52.0 bits (123), Expect = 4e-04, Method: Composition-based stats.
Identities = 46/272 (16%), Positives = 84/272 (30%), Gaps = 34/272 (12%)
Query: 436 LDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEV----MDYFTRCVG 491
+DL + Y+ +GT + ++L G S + + V
Sbjct: 111 VDLRAEECAFHPVRDYL---SGTIWDGRARVDKWLSYYLGVEPSSYIEGIGRLFLIAMVA 167
Query: 492 MALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANP 551
G KA + + G G+ KST G + ++ +
Sbjct: 168 RIFQAGCKADYMVVLEGPQGARKST----ACAILGGPWFSDSLPDVTSGKDVDQ------ 217
Query: 552 SLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPN 611
L G ++ I+E + +A +K R +G P N
Sbjct: 218 ---HLRGKWLIEIAEMSAMSRAESAALKAFISRQTERYRPAFGRKEVVEPRQCLFIGSTN 274
Query: 612 KHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGL 671
K ++R+ RR+ + + D + EA + G K +
Sbjct: 275 KAAYLRDETGG--RRF----WPVKVGAIDTEALAHDRDQLFAEAVHLYRAGAKWWPDAQF 328
Query: 672 DVDIPEVCLKAKEEERQGTD----TYQAWIDD 699
++ +K ++E R TD T AW+ D
Sbjct: 329 ELRH----IKPQQEARFETDAWEETIAAWLRD 356
>gi|167463641|ref|ZP_02328730.1| RecA-family ATPase [Paenibacillus larvae subsp. larvae BRL-230010]
Length = 750
Score = 51.6 bits (122), Expect = 5e-04, Method: Composition-based stats.
Identities = 28/126 (22%), Positives = 44/126 (34%), Gaps = 18/126 (14%)
Query: 209 EITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGS-TYDEENFNY 267
++ A L + S+ +W+ V MA+ +E +S WSK+ S Y
Sbjct: 6 DLVALLEYIDPSYL--SYQDWVAVGMALKYEGYTASD----WDDWSKRDSTRYHPGECFK 59
Query: 268 KWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYT 327
KW TF E G T T + +G + R D +N + Y
Sbjct: 60 KWSTF--EGTGTPITGA-TITQMAKDNGWMPRSTHQDDRELD-WNDEITGD-------YV 108
Query: 328 ADTKAW 333
+ W
Sbjct: 109 VIDRNW 114
>gi|288801498|ref|ZP_06406950.1| hypothetical protein HMPREF0669_01890 [Prevotella sp. oral taxon
299 str. F0039]
gi|288331579|gb|EFC70065.1| hypothetical protein HMPREF0669_01890 [Prevotella sp. oral taxon
299 str. F0039]
Length = 404
Score = 51.6 bits (122), Expect = 5e-04, Method: Composition-based stats.
Identities = 62/408 (15%), Positives = 129/408 (31%), Gaps = 61/408 (14%)
Query: 372 EPEDNNKNSKSPRF-WFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLG 430
E K SK+ R F ++ + S +T ++S R +
Sbjct: 5 RAEGRAKQSKNERIEQFLKEHYAFRFNTVKSRTEFREQDSNSSFRPLTKYDINSMRRLV- 63
Query: 431 EQDGILDLETGQKVKPTKELYITKSTGTPF-VEGEPSQEFLDLVSGYFESEE-------- 481
DG L++ T I + F + P +EFL + +E
Sbjct: 64 --DGTLEIYT-------PSDNIRAILESDFCNKVNPIREFLQNLPKPKGEDESEIIRLAN 114
Query: 482 ---------VMDYFTRCVGMALLG-----GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527
YF + + + + + + G G K+T ++L+
Sbjct: 115 CVTVKNPEKWKHYFVKWLVAVVANAMDDLQCRNHTCLVLTGEQGKFKTTFLDLLC----- 169
Query: 528 QYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCM 587
+ P+ + + I I + ++ + ++K + +
Sbjct: 170 --PEELKNYLFTGKIDPQGKDVQTLIAEYLF--INIDDQLKALNKRDENELKNLITTPRV 225
Query: 588 TARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKL 647
R Y E P + N + F+ +P + RR+ +PF+ + DA+ +
Sbjct: 226 KYRRPYDTYIEEYPHLASFMASVNGNDFLTDPTGS--RRF--LPFEVEHIDIDAAKEINI 281
Query: 648 ETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQ-AWID-DCCDIGE 705
Y+ + W + + ++ + E Q ++ +Q ++ + G
Sbjct: 282 NKVYSEAVELWRVD-YHYWFNE-----------EEIAELHQESEGFQVQTVEYEMLLKGM 329
Query: 706 NLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKR 753
+ + SE Y +S R + LK+ GF+ KR
Sbjct: 330 EKPAVTEESYMTTSEILNYLRGYTTLNLSERRMGEALKKAGFLRKSKR 377
>gi|306833439|ref|ZP_07466566.1| prophage Lp4 protein 7 [Streptococcus bovis ATCC 700338]
gi|304424209|gb|EFM27348.1| prophage Lp4 protein 7 [Streptococcus bovis ATCC 700338]
Length = 574
Score = 51.6 bits (122), Expect = 5e-04, Method: Composition-based stats.
Identities = 33/155 (21%), Positives = 55/155 (35%), Gaps = 15/155 (9%)
Query: 8 EQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEK-IDKLPAC---GFGFVCGVGEQ 63
E A GF++ PL+ K Q + W+E+ + + I + G G G
Sbjct: 6 ESALNYAREGFQVFPLQSNSKSKQIVKSWKEKATTDNEVIQNWFSNTDYNVGVRTGNG-- 63
Query: 64 PLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIP--FRMNKEGIKKKKTTES 121
DID+K E N ++ L P +I + P +R+++E +
Sbjct: 64 -FIVIDIDNKSE--VNGYESIKLFLKDFPSTKIVKTPNNGWHMYYRVDREISCRT----G 116
Query: 122 TQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHR 156
+DI G G Y V + + P
Sbjct: 117 IVKGVDIRGDGGYVVGIGSVVNGNRYFVSRDEPIA 151
>gi|313896490|ref|ZP_07830041.1| primase C-terminal domain protein [Selenomonas sp. oral taxon 137
str. F0430]
gi|312974914|gb|EFR40378.1| primase C-terminal domain protein [Selenomonas sp. oral taxon 137
str. F0430]
Length = 669
Score = 51.6 bits (122), Expect = 5e-04, Method: Composition-based stats.
Identities = 22/101 (21%), Positives = 34/101 (33%), Gaps = 14/101 (13%)
Query: 207 NREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGK--EIARRWSKQGSTYDEEN 264
++ I + L WI V MA+ +G I WS++ Y
Sbjct: 2 DKNILSALKYINVA--EVDRATWISVGMALK------EEGYPCSIWDDWSQRDPRYHPGE 53
Query: 265 FNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLI-PKGLLA 304
KW+ F+ T K T L G + +G +A
Sbjct: 54 CEKKWEGFNGTT---TPVKGGTIVQLAKERGWMPCAEGAMA 91
>gi|257483927|ref|ZP_05637968.1| hypothetical protein PsyrptA_11777 [Pseudomonas syringae pv. tabaci
ATCC 11528]
gi|331013142|gb|EGH93198.1| hypothetical protein PSYTB_26441 [Pseudomonas syringae pv. tabaci
ATCC 11528]
Length = 380
Score = 51.6 bits (122), Expect = 5e-04, Method: Composition-based stats.
Identities = 31/217 (14%), Positives = 70/217 (32%), Gaps = 34/217 (15%)
Query: 464 EPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFI---HIRGVGGSGKSTLMNL 520
E + F+ + +F + DYF + M++ ++ Q+ I +R G GK
Sbjct: 73 EQVEPFISFLRRWFPDDSERDYFGWWIAMSV--RHQEQKIIATPLLRSEHGVGKGFFAET 130
Query: 521 IK-YAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIK 579
+ G+ D++ + + G ++++ E + + +K
Sbjct: 131 LLPGLLGSTAAALCHLKDVVGDFNET----------VEGKTLLVVDEVYRSKKSTTDSLK 180
Query: 580 QMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR 639
+ +T R + + V D RR+ + F + ++
Sbjct: 181 SIQANATLTLRRKHLPVVVIDNYINFCITSNDHIPLVIESGD---RRFWIPAFIRHKESK 237
Query: 640 ---DASFAQKLETKYTLEAKKWFLKG----VKAYISK 669
D + + W L G V+ Y+ +
Sbjct: 238 SETDRFLNDQFK--------PWLLNGGFQLVRDYLEQ 266
>gi|154490806|ref|ZP_02030747.1| hypothetical protein PARMER_00723 [Parabacteroides merdae ATCC
43184]
gi|154088554|gb|EDN87598.1| hypothetical protein PARMER_00723 [Parabacteroides merdae ATCC
43184]
Length = 407
Score = 51.6 bits (122), Expect = 5e-04, Method: Composition-based stats.
Identities = 38/207 (18%), Positives = 64/207 (30%), Gaps = 33/207 (15%)
Query: 455 STGTPFVEGEPSQEFLDLVSGYFESE-EV-MDYFTRCVGMALLGGNKAQRFIHIR---GV 509
T P + +L+ F E+ MDYF N Q+ +
Sbjct: 89 ITHIP--QKGKFPHIQELIHHIFGEHYELGMDYFQLLY------LNPVQKLPILLLVSQE 140
Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569
+GKST +N +K F V D G ++ + E
Sbjct: 141 RNTGKSTFLNFLKAIF-QDNVTFNTNEDFRSQFN----------ADWAGKLLIGVDEVLL 189
Query: 570 NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK---HLFVRNPDDAWWRR 626
N ++ ++K ++ + E + N + + + +W R
Sbjct: 190 NRREDSERLKNLSTASVYKIEAKGKDR-CEVQFFGKFIMCSNNEDTPVLIEPGETRYWMR 248
Query: 627 YIVIPFDKPIANRDASFAQKLETKYTL 653
I P+ N D SF QKL T+
Sbjct: 249 KI-----NPLKNDDTSFLQKLITEIPA 270
>gi|126440554|ref|YP_001057153.1| hypothetical protein BURPS668_0098 [Burkholderia pseudomallei 668]
gi|126220047|gb|ABN83553.1| conserved hypothetical protein [Burkholderia pseudomallei 668]
Length = 950
Score = 51.6 bits (122), Expect = 6e-04, Method: Composition-based stats.
Identities = 15/81 (18%), Positives = 26/81 (32%), Gaps = 6/81 (7%)
Query: 224 GSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDT--- 280
D W MA+ E +G + WS+ Y+ + W +F +I
Sbjct: 17 DDRDTWRQAGMALKAEF--GEEGFTLWNEWSQGAQNYNARDARDVWKSFKGGKITINTLF 74
Query: 281 -AKKRSTFTSLFYHHGKLIPK 300
K+ F + + P
Sbjct: 75 HLAKQGGFDPRAHRAKSIDPA 95
>gi|123134482|ref|XP_001277107.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121820031|gb|EAX64177.1| hypothetical protein TVAG_571570 [Trichomonas vaginalis G3]
Length = 260
Score = 51.6 bits (122), Expect = 6e-04, Method: Composition-based stats.
Identities = 38/251 (15%), Positives = 74/251 (29%), Gaps = 28/251 (11%)
Query: 499 KAQRFIHIRGVGGSGKSTLM-NLIKYAF-GNQYVINAEASDIMQNRPPEAGKANPSLIRL 556
K + + I G G+GK+T +++ G +I
Sbjct: 15 KIETALIIIGNQGTGKNTFFTDILCKLLEGYSNPNMTNLENICGKFNSSIEN-------- 66
Query: 557 MGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKH 613
++++ +E D +N+ +K + Y + + + N
Sbjct: 67 --MKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAV 124
Query: 614 LFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDV 673
D RRY+V+ +D + L T + +
Sbjct: 125 PMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNP 180
Query: 674 D-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKR 732
IP + E + Y+ +ID+ + + Y EY++ Y
Sbjct: 181 RQIPHTEERQTLLEANKS-VYELFIDETDFVSLDER-------SLYDEYKQYCQEYGYMA 232
Query: 733 ISTRTVTLNLK 743
S RT N+K
Sbjct: 233 ASKRTFLANVK 243
>gi|220923968|ref|YP_002499270.1| bifunctional DNA primase/polymerase [Methylobacterium nodulans ORS
2060]
gi|219948575|gb|ACL58967.1| Bifunctional DNA primase/polymerase [Methylobacterium nodulans ORS
2060]
Length = 970
Score = 51.6 bits (122), Expect = 6e-04, Method: Composition-based stats.
Identities = 39/258 (15%), Positives = 70/258 (27%), Gaps = 50/258 (19%)
Query: 17 GFKLIPLRLGDKRP---------QRLGKWEEQLLSSEKIDKL----PACGFGFVCGVGEQ 63
G+ + P K+P + G ++I P G G
Sbjct: 20 GWPVFPCSPTTKQPLTRKESAPGAKDGGLHLATTDEDQIRAWWTKHPRAMIGIPTGARTG 79
Query: 64 PLYAFDIDSKDEKT---ANTFKDTFEILHGTPIVRIGQKPKILIP--FRMN--------- 109
+ D+D D A + E + G P I + + FR +
Sbjct: 80 NV--LDLDLGDPAVITGAAYLERLREHVGGIPETAIAETGSGGLHLWFRADPDAPIANGA 137
Query: 110 ----------KEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTW-TTPPHRFK 158
EG + ++ +D+ G G Y + + + YTW P
Sbjct: 138 NICPALFIPPTEGATRADGRKAKGAAIDVRGEGGYVIVPPSVREDGRAYTWCPGPEDGLS 197
Query: 159 VEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKT-WTNNNNRQYTNREITAFLSCF 217
E L + ++ +D ++ S+ W A
Sbjct: 198 PP---------TEALLRLMRKEEARAARDAQTEAASRGPWAPRPADGSDPARSLAEGDEA 248
Query: 218 GEEFYNGSHDEWIPVVMA 235
+ + D+ I V A
Sbjct: 249 VVRYGRAALDKEIAAVAA 266
>gi|148544817|ref|YP_001272187.1| hypothetical protein Lreu_1610 [Lactobacillus reuteri DSM 20016]
gi|184154160|ref|YP_001842501.1| hypothetical protein LAR_1505 [Lactobacillus reuteri JCM 1112]
gi|227363957|ref|ZP_03848058.1| conserved hypothetical protein [Lactobacillus reuteri MM2-3]
gi|325683161|ref|ZP_08162677.1| hypothetical protein HMPREF0536_11599 [Lactobacillus reuteri
MM4-1A]
gi|148531851|gb|ABQ83850.1| hypothetical protein Lreu_1610 [Lactobacillus reuteri DSM 20016]
gi|183225504|dbj|BAG26021.1| hypothetical protein [Lactobacillus reuteri JCM 1112]
gi|227071012|gb|EEI09334.1| conserved hypothetical protein [Lactobacillus reuteri MM2-3]
gi|324977511|gb|EGC14462.1| hypothetical protein HMPREF0536_11599 [Lactobacillus reuteri
MM4-1A]
Length = 688
Score = 51.3 bits (121), Expect = 6e-04, Method: Composition-based stats.
Identities = 40/229 (17%), Positives = 74/229 (32%), Gaps = 25/229 (10%)
Query: 450 LYITKSTGTPFVEGEPSQEFLDLVSGYFESE-EVMDYFTRCVGMALLG-GNKAQRFIHIR 507
YI + E ++ + ++ + E + Y + + G K +RF +
Sbjct: 296 DYIDIDKDSKLKASEEYKQVIQFLTHISGGKLEQLLYMLGFIPLQNTGILAKVRRFFILL 355
Query: 508 GVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRL----MGSRIVI 563
GV G+GK+ L +L++ F N + + +P+LI G +
Sbjct: 356 GVPGAGKTVLASLLEKIF--NNTQNNTSCILTSESNINKALTDPNLIDANDTKKGQLTLW 413
Query: 564 ISETNENDEINA------AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVR 617
+ + + NA I + G M+ + + S I N +R
Sbjct: 414 FDDFQTDSQNNAISSKAGTAINGIISGKTMSGAAKFQQYHDVKLPS-LIVIATNALPQIR 472
Query: 618 NPDDAWWRRYIVIPFDKP------IANRDASFAQKLETKYTLEAKKWFL 660
R V + I N DA A + K E + +
Sbjct: 473 QV--GTADRMFVFNCNTKLYDEVDIPNDDA--AAWINNKEVQEVMFYLI 517
>gi|76810763|ref|YP_331725.1| inner membrane protein [Burkholderia pseudomallei 1710b]
gi|76580216|gb|ABA49691.1| inner membrane protein [Burkholderia pseudomallei 1710b]
Length = 955
Score = 51.3 bits (121), Expect = 6e-04, Method: Composition-based stats.
Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 2/49 (4%)
Query: 224 GSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTF 272
D W MA+ E +G + WS+ Y+ + W +F
Sbjct: 22 DDRDTWRQAGMALKAEF--GEEGFTLWNEWSQGAQNYNARDARDVWKSF 68
>gi|167822127|ref|ZP_02453598.1| inner membrane protein [Burkholderia pseudomallei 9]
gi|226193316|ref|ZP_03788926.1| DNA primase TraC [Burkholderia pseudomallei Pakistan 9]
gi|225934916|gb|EEH30893.1| DNA primase TraC [Burkholderia pseudomallei Pakistan 9]
Length = 950
Score = 51.3 bits (121), Expect = 6e-04, Method: Composition-based stats.
Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 2/49 (4%)
Query: 224 GSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTF 272
D W MA+ E +G + WS+ Y+ + W +F
Sbjct: 17 DDRDTWRQAGMALKAEF--GEEGFTLWNEWSQGAQNYNARDARDVWKSF 63
>gi|254261053|ref|ZP_04952107.1| DNA primase TraC [Burkholderia pseudomallei 1710a]
gi|254219742|gb|EET09126.1| DNA primase TraC [Burkholderia pseudomallei 1710a]
Length = 950
Score = 51.3 bits (121), Expect = 6e-04, Method: Composition-based stats.
Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 2/49 (4%)
Query: 224 GSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTF 272
D W MA+ E +G + WS+ Y+ + W +F
Sbjct: 17 DDRDTWRQAGMALKAEF--GEEGFTLWNEWSQGAQNYNARDARDVWKSF 63
>gi|206562201|ref|YP_002232964.1| hypothetical protein BCAM0337 [Burkholderia cenocepacia J2315]
gi|198038241|emb|CAR54195.1| conserved hypothetical protein [Burkholderia cenocepacia J2315]
Length = 615
Score = 51.3 bits (121), Expect = 6e-04, Method: Composition-based stats.
Identities = 13/65 (20%), Positives = 23/65 (35%), Gaps = 6/65 (9%)
Query: 207 NREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFN 266
+ A L+ G + W+ + AV H G ++ WS+ YD +
Sbjct: 9 ADRVRAALAAIPA----GDYSTWVDMAFAVKHGL--GEAGFDLWDAWSQTAPNYDARSAR 62
Query: 267 YKWDT 271
W +
Sbjct: 63 ATWRS 67
>gi|126452256|ref|YP_001064398.1| hypothetical protein BURPS1106A_0113 [Burkholderia pseudomallei
1106a]
gi|242316894|ref|ZP_04815910.1| DNA primase TraC [Burkholderia pseudomallei 1106b]
gi|126225898|gb|ABN89438.1| DNA primase TraC [Burkholderia pseudomallei 1106a]
gi|242140133|gb|EES26535.1| DNA primase TraC [Burkholderia pseudomallei 1106b]
Length = 950
Score = 51.3 bits (121), Expect = 6e-04, Method: Composition-based stats.
Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 2/49 (4%)
Query: 224 GSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTF 272
D W MA+ E +G + WS+ Y+ + W +F
Sbjct: 17 DDRDTWRQAGMALKAEF--GEEGFTLWNEWSQGAQNYNARDARDVWKSF 63
>gi|221195525|ref|ZP_03568580.1| RecA-family ATPase [Atopobium rimae ATCC 49626]
gi|221184712|gb|EEE17104.1| RecA-family ATPase [Atopobium rimae ATCC 49626]
Length = 727
Score = 51.3 bits (121), Expect = 6e-04, Method: Composition-based stats.
Identities = 21/95 (22%), Positives = 30/95 (31%), Gaps = 10/95 (10%)
Query: 208 REITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGS-TYDEENFN 266
R++ L S+ EW+ MA+H WS+Q S Y E
Sbjct: 6 RDLLDALDAIDPA--GLSYQEWVDCGMALHESGFTWQD----WDEWSRQDSARYHEGECE 59
Query: 267 YKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKG 301
KW +F G T + G +G
Sbjct: 60 RKWKSF---GNGVERITSGTIIQMARERGWYPSQG 91
>gi|53717722|ref|YP_106708.1| hypothetical protein BPSL0082 [Burkholderia pseudomallei K96243]
gi|52208136|emb|CAH34066.1| hypothetical protein BPSL0082 [Burkholderia pseudomallei K96243]
Length = 955
Score = 51.3 bits (121), Expect = 6e-04, Method: Composition-based stats.
Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 2/49 (4%)
Query: 224 GSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTF 272
D W MA+ E +G + WS+ Y+ + W +F
Sbjct: 22 DDRDTWRQAGMALKAEF--GEEGFTLWNEWSQGAQNYNARDARDVWKSF 68
>gi|301308956|ref|ZP_07214901.1| conserved hypothetical protein [Bacteroides sp. 20_3]
gi|300832982|gb|EFK63607.1| conserved hypothetical protein [Bacteroides sp. 20_3]
Length = 395
Score = 51.3 bits (121), Expect = 6e-04, Method: Composition-based stats.
Identities = 32/197 (16%), Positives = 60/197 (30%), Gaps = 35/197 (17%)
Query: 467 QEFLDLVSGYFESE-EV-MDYFTRCVGMALLGGNKAQRFIHIR---GVGGSGKSTLMNLI 521
LV F + E+ MDY Q+ + +GKST +N +
Sbjct: 90 PCIRSLVEHIFGEQYELGMDYMQLLYLY------PIQKLPILLLVSEERNTGKSTFLNFL 143
Query: 522 KYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM 581
K F + N + N G ++++ E N ++ ++K +
Sbjct: 144 KAIFQDNVTFNTNEDF--------RSQFNSDWA---GKLLIMVDEVLLNRREDSERLKNL 192
Query: 582 TGGDCMTARLNYGNTYSESPASFTPFIVPN--KHLFVRNPDDAWWRRYIVIPFDKPIAN- 638
+ + +E + N + + + RY V + I
Sbjct: 193 STTLSYKVEAKGKDR-NEIGFFAKFVLCSNNEHLPVIIDAGE---TRYWV----RKIERL 244
Query: 639 --RDASFAQKLETKYTL 653
D F QKL+ +
Sbjct: 245 QCDDTDFLQKLKDEIPA 261
>gi|237810289|ref|YP_002894740.1| primase C 2 (PriCT-2) family [Burkholderia pseudomallei MSHR346]
gi|237504566|gb|ACQ96884.1| primase C 2 (PriCT-2) family [Burkholderia pseudomallei MSHR346]
Length = 950
Score = 51.3 bits (121), Expect = 6e-04, Method: Composition-based stats.
Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 2/49 (4%)
Query: 224 GSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTF 272
D W MA+ E +G + WS+ Y+ + W +F
Sbjct: 17 DDRDTWRQAGMALKAEF--GEEGFTLWNEWSQGAQNYNARDARDVWKSF 63
>gi|167843732|ref|ZP_02469240.1| hypothetical protein BpseB_00480 [Burkholderia pseudomallei B7210]
Length = 950
Score = 51.3 bits (121), Expect = 6e-04, Method: Composition-based stats.
Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 2/49 (4%)
Query: 224 GSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTF 272
D W MA+ E +G + WS+ Y+ + W +F
Sbjct: 17 DDRDTWRQAGMALKAEF--GEEGFTLWNEWSQGAQNYNARDARDVWKSF 63
>gi|167813585|ref|ZP_02445265.1| hypothetical protein Bpse9_00515 [Burkholderia pseudomallei 91]
Length = 950
Score = 51.3 bits (121), Expect = 6e-04, Method: Composition-based stats.
Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 2/49 (4%)
Query: 224 GSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTF 272
D W MA+ E +G + WS+ Y+ + W +F
Sbjct: 17 DDRDTWRQAGMALKAEF--GEEGFTLWNEWSQGAQNYNARDARDVWKSF 63
>gi|319639756|ref|ZP_07994486.1| hypothetical protein HMPREF9011_00083 [Bacteroides sp. 3_1_40A]
gi|317388573|gb|EFV69422.1| hypothetical protein HMPREF9011_00083 [Bacteroides sp. 3_1_40A]
Length = 396
Score = 51.3 bits (121), Expect = 7e-04, Method: Composition-based stats.
Identities = 32/187 (17%), Positives = 65/187 (34%), Gaps = 25/187 (13%)
Query: 472 LVSGYFESE-EV-MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529
L+ F + E+ MDY L K + + +GKST +N +K F
Sbjct: 94 LMRHIFGEQYELGMDYMQLLY---LQPTQKLPIVLLVSEERNTGKSTFLNFLKAVF---- 146
Query: 530 VINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTA 589
E + + N G ++++ E N ++ ++K ++
Sbjct: 147 ----ENNVTFNTNEDFRSQFNSDWA---GKLLIVVDEVLLNRREDSERLKNLSTTFTYKV 199
Query: 590 RLNYGNTYSESPASFTPFIVPNK---HLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQK 646
+ +E + N + + + +W R I+ P+ + D +F QK
Sbjct: 200 EAKGKDR-TEIAFFAKFVLCSNNEYLPILIDAGETRYWVRKIM-----PLQSDDTNFLQK 253
Query: 647 LETKYTL 653
L+ +
Sbjct: 254 LKAEIPA 260
>gi|160887901|ref|ZP_02068904.1| hypothetical protein BACUNI_00305 [Bacteroides uniformis ATCC 8492]
gi|218131379|ref|ZP_03460183.1| hypothetical protein BACEGG_02994 [Bacteroides eggerthii DSM 20697]
gi|237717336|ref|ZP_04547817.1| conserved hypothetical protein [Bacteroides sp. D1]
gi|237724860|ref|ZP_04555341.1| conserved hypothetical protein [Bacteroides sp. D4]
gi|262406101|ref|ZP_06082651.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|270294842|ref|ZP_06201043.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|294778044|ref|ZP_06743478.1| conserved hypothetical protein [Bacteroides vulgatus PC510]
gi|156862587|gb|EDO56018.1| hypothetical protein BACUNI_00305 [Bacteroides uniformis ATCC 8492]
gi|217986311|gb|EEC52648.1| hypothetical protein BACEGG_02994 [Bacteroides eggerthii DSM 20697]
gi|229436598|gb|EEO46675.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
gi|229443319|gb|EEO49110.1| conserved hypothetical protein [Bacteroides sp. D1]
gi|262356976|gb|EEZ06066.1| conserved hypothetical protein [Bacteroides sp. 2_1_22]
gi|270274089|gb|EFA19950.1| conserved hypothetical protein [Bacteroides sp. D20]
gi|294448102|gb|EFG16668.1| conserved hypothetical protein [Bacteroides vulgatus PC510]
Length = 396
Score = 51.3 bits (121), Expect = 7e-04, Method: Composition-based stats.
Identities = 32/187 (17%), Positives = 65/187 (34%), Gaps = 25/187 (13%)
Query: 472 LVSGYFESE-EV-MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529
L+ F + E+ MDY L K + + +GKST +N +K F
Sbjct: 94 LMRHIFGEQYELGMDYMQLLY---LQPTQKLPIVLLVSEERNTGKSTFLNFLKAVF---- 146
Query: 530 VINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTA 589
E + + N G ++++ E N ++ ++K ++
Sbjct: 147 ----ENNVTFNTNEDFRSQFNSDWA---GKLLIVVDEVLLNRREDSERLKNLSTTFTYKV 199
Query: 590 RLNYGNTYSESPASFTPFIVPNK---HLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQK 646
+ +E + N + + + +W R I+ P+ + D +F QK
Sbjct: 200 EAKGKDR-TEIAFFAKFVLCSNNEYLPILIDAGETRYWVRKIM-----PLQSDDTNFLQK 253
Query: 647 LETKYTL 653
L+ +
Sbjct: 254 LKAEIPA 260
>gi|125974481|ref|YP_001038391.1| hypothetical protein Cthe_1980 [Clostridium thermocellum ATCC
27405]
gi|125714706|gb|ABN53198.1| hypothetical protein Cthe_1980 [Clostridium thermocellum ATCC
27405]
Length = 266
Score = 51.3 bits (121), Expect = 7e-04, Method: Composition-based stats.
Identities = 33/184 (17%), Positives = 49/184 (26%), Gaps = 29/184 (15%)
Query: 4 MQWKEQAKQAIHNGFKLIPLR-----------------LGDKRPQRLGKWEEQLLSSEKI 46
M + A + +IPL K P G + E+I
Sbjct: 1 MTMMDAAIKYAEANIPVIPLHWICEDGSCSCKAGKNCDSKGKHPLYTGWYNNSTTDVEQI 60
Query: 47 DKL----PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKI 102
K P G G L D+D ++T + + T L T G
Sbjct: 61 KKWWTKTPNANIGIPTGAKSGWLV-LDVDDGGDETLSALEATHGKLPDTVTAVTGG---G 116
Query: 103 LIPFRMNKEGIKKKKTTESTQGHLDILGCGQ-YFVAYNIHPKTKKEYTW--TTPPHRFKV 159
+ + + LD G VA +IH + Y W P
Sbjct: 117 GLHYIFKYSQGRSIPNKTKFALGLDTRSTGGLIVVAPSIHV-SGNRYEWIKDHSPFDRTP 175
Query: 160 EDTP 163
+ P
Sbjct: 176 AEAP 179
>gi|298369852|ref|ZP_06981168.1| conserved hypothetical protein [Neisseria sp. oral taxon 014 str.
F0314]
gi|298281312|gb|EFI22801.1| conserved hypothetical protein [Neisseria sp. oral taxon 014 str.
F0314]
Length = 812
Score = 51.3 bits (121), Expect = 7e-04, Method: Composition-based stats.
Identities = 37/266 (13%), Positives = 85/266 (31%), Gaps = 30/266 (11%)
Query: 513 GKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEND- 571
GKST I A +Y + + + ++R A L+ + + I E + +D
Sbjct: 512 GKSTFGEKIVKALFGEYTRQLDQNAL-ESRFNSA---------LLFALVTIFEEISPSDE 561
Query: 572 EIN-AAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKH-LFVRNPDDAWWRRYIV 629
+N K+K M D + + + ++ + + + D RR++V
Sbjct: 562 RLNVIGKLKNMITSDVIMVERKGRDAEKHGDFNSFIIFSNDERSIPIESND----RRFMV 617
Query: 630 IPFDKPIANRDASFAQKLETKYTLEAKKWFLKGV-KAYISKGLDVDIPEVCLKAKEEERQ 688
+ +K ++ Q+ + FL + Y G + ++
Sbjct: 618 VNCNKKFSDAQYEALQEELDNGGIRHFAEFLHALPLTYQEDGEERKFSPHTKPLMTPIKK 677
Query: 689 GTDTY-----QAWIDDC---CDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTL 740
+ +A++DD + + L Y + + + +
Sbjct: 678 RMISLNKPSWEAFLDDWREGDLDVPYVTCAATDLWAVYKRWAHNTKTF---HLQQKNFYA 734
Query: 741 NLKQKGFIGGIKREKIEKEWKSKRII 766
N+ ++ + + WK R
Sbjct: 735 NIGKR-LEEKRSDVALREGWKKVRFF 759
>gi|165969093|ref|YP_001650993.1| helicase [Orgyia leucostigma NPV]
gi|164663589|gb|ABY65809.1| helicase [Orgyia leucostigma NPV]
Length = 1238
Score = 51.3 bits (121), Expect = 7e-04, Method: Composition-based stats.
Identities = 29/147 (19%), Positives = 54/147 (36%), Gaps = 16/147 (10%)
Query: 495 LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLI 554
+ + + I+ G GSGKS+ L++ F + S + + + +AN +
Sbjct: 935 IPSDFEKCCIYCTGEPGSGKSSNAELMEQIF--VVHKHDADSYTLSKKETDEMEANKLIS 992
Query: 555 RLMGSRIVIISETNENDEINAAKIKQMTGGDCM---TARLNYGNTYSESPASFTPFIVPN 611
+L +I+E E N + K T D Y + A++ I+ N
Sbjct: 993 QLY-----VINEMKE---CNDSFFK--TTADSTKSNAVCRKYQGSQKYE-ANYKLMIINN 1041
Query: 612 KHLFVRNPDDAWWRRYIVIPFDKPIAN 638
K L + N D R+ ++
Sbjct: 1042 KPLHISNYDKGVRNRFAIVYMAHEFEE 1068
>gi|163851880|ref|YP_001639923.1| hypothetical protein Mext_2457 [Methylobacterium extorquens PA1]
gi|163663485|gb|ABY30852.1| hypothetical protein Mext_2457 [Methylobacterium extorquens PA1]
Length = 820
Score = 51.3 bits (121), Expect = 7e-04, Method: Composition-based stats.
Identities = 27/176 (15%), Positives = 59/176 (33%), Gaps = 19/176 (10%)
Query: 458 TPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALL-GGNKAQRFIHIRGVGGSGKST 516
P + ++ L F ++ + L G K + + G G+GK+T
Sbjct: 452 IPAESTDGAEPILRHFDYLFPKAAEREHILDYLAHMLRHPGVKIAHGLMVTGPQGTGKTT 511
Query: 517 LMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA- 575
+ +++ G++ E ++ RL+ + ++I E
Sbjct: 512 IGIIVRGLIGDRNARKVEGDELADKWTS----------RLVNVQALVIEEAAHGQRYEIY 561
Query: 576 AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKH--LFVRNPDDAWWRRYIV 629
+ K++ G+ T + Y+ ++ N + V D RR+ V
Sbjct: 562 ERFKELFTGETFTVQDKQVPLYNGRCPRGVL-LLTNHEAAITVTGND----RRFHV 612
>gi|54307149|ref|YP_133703.1| hypothetical protein NBU1_09 [Bacteroides uniformis]
gi|8308024|gb|AAF74441.1|AF238307_5 unknown [Bacteroides uniformis]
Length = 396
Score = 51.3 bits (121), Expect = 7e-04, Method: Composition-based stats.
Identities = 31/187 (16%), Positives = 64/187 (34%), Gaps = 25/187 (13%)
Query: 472 LVSGYFESE-EV-MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529
L+ F + E+ MDY L K + + +GKST +N +K F
Sbjct: 94 LMRHIFGEQYELGMDYMQLLY---LQPTQKLPIVLLVSEERNTGKSTFLNFLKAVF---- 146
Query: 530 VINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTA 589
E + + N G ++++ E ++ ++K ++
Sbjct: 147 ----ENNVTFNTNEDFRSQFNSDWA---GKLLIVVDEVLLYRREDSERLKNLSTTFTYKV 199
Query: 590 RLNYGNTYSESPASFTPFIVPNK---HLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQK 646
+ +E + N + + + +W R I+ P+ + D +F QK
Sbjct: 200 EAKGKDR-TEIAFFAKFVLCSNNEYLPILIDAGETRYWVRKIM-----PLQSDDTNFLQK 253
Query: 647 LETKYTL 653
L+ +
Sbjct: 254 LKAEIPA 260
>gi|289661963|ref|ZP_06483544.1| hypothetical protein XcampvN_02386 [Xanthomonas campestris pv.
vasculorum NCPPB702]
Length = 577
Score = 51.3 bits (121), Expect = 7e-04, Method: Composition-based stats.
Identities = 47/275 (17%), Positives = 90/275 (32%), Gaps = 31/275 (11%)
Query: 439 ETGQKVKPTKELYI------TKSTG------TPFVEGEPSQEFLDLVSGYFESEEVMDYF 486
G+ V +E Y K+T ++L + F + ++
Sbjct: 161 RDGELVTANEEDYFEFDKLRLKTTQKSIRLEIQRDADAFRVDWLPWLWQCFGTHGMVA-M 219
Query: 487 TRCVGMALLGGNK--AQRFIHI--RGVGGSGKSTLMNLIKYAFG-NQYVINAEASDIMQN 541
T G + + F + G G+GK+TL+ + G + Y A
Sbjct: 220 TFWFGSLFAEQIRAGHKSFPFLEATGEAGAGKTTLLTFLWKLLGRSDYEGFDPAKSSKAG 279
Query: 542 RPPEAGKANPSLIRLMGSRIVIISETNE--NDEINAAKIKQMTGGDCMTAR--LNYGNTY 597
R G+ + + L+ + SE ++ + ++K GG + R N GN
Sbjct: 280 RARAMGQVSGMPVVLLEAD---RSEPDKAHSKTFEWDELKDFFGGGTLATRGVRNGGNET 336
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP-IANRDASFAQKLETKYTLEAK 656
E P T I N + +A R + + F +P + A L E
Sbjct: 337 YEPPFRGTIVITQN---AAVDASEAILTRIVKLHFKRPQVTTESRIAADNLNALQVEEVS 393
Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTD 691
+ ++ ++ + + E + + R D
Sbjct: 394 HFLVRAIR--QERAILDLFAERVKVFEAKLRAQQD 426
>gi|330445050|ref|ZP_08308703.1| primase C terminal 2 family protein [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
gi|328489241|dbj|GAA03200.1| primase C terminal 2 family protein [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
Length = 1216
Score = 51.3 bits (121), Expect = 7e-04, Method: Composition-based stats.
Identities = 11/52 (21%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Query: 225 SHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEE 276
+++W + +++ E +++ WS Q S+YD++ F W +F
Sbjct: 25 PYNDWAKLGRSLYSEY--GDDARDMFELWSAQSSSYDKKEFQSHWRSFRKTR 74
>gi|123262753|ref|XP_001289401.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121860343|gb|EAX76471.1| hypothetical protein TVAG_289810 [Trichomonas vaginalis G3]
Length = 263
Score = 51.3 bits (121), Expect = 7e-04, Method: Composition-based stats.
Identities = 39/251 (15%), Positives = 77/251 (30%), Gaps = 28/251 (11%)
Query: 499 KAQRFIHIRGVGGSGKSTLM-NLIKYAF-GNQYVINAEASDIMQNRPPEAGKANPSLIRL 556
K + + + G G+GK+T +++ G +I
Sbjct: 18 KNETALIVIGKQGTGKNTFFTDILCKLLEGYSNPNMTNLENICGKFNSSIEN-------- 69
Query: 557 MGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKH 613
++++ +E D +N+ +K + Y + + + N
Sbjct: 70 --MKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAV 127
Query: 614 LFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDV 673
D RRY+V+ +D + L T + +
Sbjct: 128 PMKLESSD---RRYVVVR-TSDSHMQDTEYFDALSETLTSDFYNHLFSYFMTLDISKFNP 183
Query: 674 D-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKR 732
IP + E + Y+ +ID+ + + SL SY +Y ++ Y
Sbjct: 184 RQIPHTEERQTLLEANKS-VYELFIDET----DFECLDERSLYDSYKQYCQE---YGYMT 235
Query: 733 ISTRTVTLNLK 743
S RT N+K
Sbjct: 236 ASKRTFLANVK 246
>gi|167900117|ref|ZP_02487518.1| hypothetical protein Bpse7_40730 [Burkholderia pseudomallei 7894]
Length = 255
Score = 51.3 bits (121), Expect = 7e-04, Method: Composition-based stats.
Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 2/49 (4%)
Query: 224 GSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTF 272
D W MA+ E +G + WS+ Y+ + W +F
Sbjct: 17 DDRDTWRQAGMALKAEF--GEEGFTLWNEWSQGAQNYNARDARDVWKSF 63
>gi|228471372|ref|ZP_04056173.1| conserved hypothetical protein [Porphyromonas uenonis 60-3]
gi|228306873|gb|EEK15986.1| conserved hypothetical protein [Porphyromonas uenonis 60-3]
Length = 396
Score = 51.3 bits (121), Expect = 8e-04, Method: Composition-based stats.
Identities = 37/265 (13%), Positives = 89/265 (33%), Gaps = 39/265 (14%)
Query: 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMG 558
+ + + G G K+T ++L+ + + ++ L+G
Sbjct: 141 RNHTCLVLTGEQGKFKTTFLDLLC-----------PPALSDYRYTGKIYPQEKDVLSLIG 189
Query: 559 SRIVIISE--TNENDEINAAKIKQMTGGDCMTARLNYGNTYSESP--ASFTPFIVPNKHL 614
++I + ++ + ++K + + R+ Y E P ASF + N L
Sbjct: 190 QNLLINIDDQLKALNKRDENELKNLITCPQVKYRMPYEKHIEERPHLASFVASVNGNDFL 249
Query: 615 FVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLE-AKKWFLKGVKAYISKGLDV 673
RR+ +PF+ ++ D A+++ AK+ +G + +
Sbjct: 250 TDPTGS----RRF--LPFE--VSAIDIDSAKEIPMDAVYGDAKRLLHEGFRYW------F 295
Query: 674 DIPEVCL-----KAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNY 728
+ E+ +A + + + + + SE Y
Sbjct: 296 NDEEIIELHRNSEAFQVYTTEMELLLRY----FTFPSEAETATKRFYMTNSEIVGYLSCY 351
Query: 729 DRKRISTRTVTLNLKQKGFIGGIKR 753
R+ +S + + L++ G+ +R
Sbjct: 352 TRQPLSPKRMGEALRKAGYTRECRR 376
>gi|323344345|ref|ZP_08084570.1| virulence-associated protein E [Prevotella oralis ATCC 33269]
gi|323094472|gb|EFZ37048.1| virulence-associated protein E [Prevotella oralis ATCC 33269]
Length = 395
Score = 50.9 bits (120), Expect = 8e-04, Method: Composition-based stats.
Identities = 38/264 (14%), Positives = 90/264 (34%), Gaps = 37/264 (14%)
Query: 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMG 558
+ + + G G K+T ++L+ + + ++ L+G
Sbjct: 140 RNHTCLVLTGEQGKFKTTFLDLLC-----------PPALSDYRYTGKIYPQEKDVLSLIG 188
Query: 559 SRIVIISE--TNENDEINAAKIKQMTGGDCMTARLNYGNTYSESP--ASFTPFIVPNKHL 614
++I + ++ + ++K + + R+ Y E P ASF + N L
Sbjct: 189 QNLIINIDDQLKALNKRDENELKNLITCPQVKYRMPYEKHIEERPHLASFVASVNGNDFL 248
Query: 615 FVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD 674
RR+ +PF+ D + + ++ Y+ EAK +G + + +
Sbjct: 249 TDPTGS----RRF--LPFEVLEIEIDRAKSIPMDAVYS-EAKTRLNEGFRYW------FN 295
Query: 675 IPEVCL-----KAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYD 729
E+ +A + + + + + + SE Y
Sbjct: 296 DEEIIELHRNSEAFQVYTTEMELLLRY----FTFPTEVETATKRFYMTNSEIVGYLSCYT 351
Query: 730 RKRISTRTVTLNLKQKGFIGGIKR 753
R+ +S + + L++ G+ +R
Sbjct: 352 RQSLSAKRMGEALRKAGYTRECRR 375
>gi|167835892|ref|ZP_02462775.1| hypothetical protein Bpse38_05335 [Burkholderia thailandensis
MSMB43]
Length = 950
Score = 50.9 bits (120), Expect = 8e-04, Method: Composition-based stats.
Identities = 11/49 (22%), Positives = 19/49 (38%), Gaps = 2/49 (4%)
Query: 224 GSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTF 272
D W MA+ E +G + WS+ Y+ ++ W +F
Sbjct: 17 DDRDTWRQAGMALKAEF--GEEGFALWNEWSQGAQNYNAKDACDVWKSF 63
>gi|295397651|ref|ZP_06807726.1| possible bacteriophage resistance protein [Aerococcus viridans ATCC
11563]
gi|294974114|gb|EFG49866.1| possible bacteriophage resistance protein [Aerococcus viridans ATCC
11563]
Length = 540
Score = 50.9 bits (120), Expect = 8e-04, Method: Composition-based stats.
Identities = 25/191 (13%), Positives = 57/191 (29%), Gaps = 17/191 (8%)
Query: 471 DLVSGYFESEEVMDYFTRCVGMALLGG---NKAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527
D ++ + + + + A++ ++ G +GK + F
Sbjct: 233 DFINMIANDDGSFNNLSLMHAYVMYRKLDLAPAEQMFFMKDFGRTGKGLFLKTFYNIF-- 290
Query: 528 QYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCM 587
+ + G+ + +ET E D ++++ G+ +
Sbjct: 291 ----KVNPINFDLLVNSTGYGKESEWMNFYGAEVAHANETGEIDNKGMVALRKIATGEVL 346
Query: 588 TARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKL 647
T R G+ + S + N+ + A R IA +D +
Sbjct: 347 TGRSIGGDNFKFKNRS-VLILDTNEQIQTNEIT-ANKSRI------VNIALKDRPKGETT 398
Query: 648 ETKYTLEAKKW 658
E +Y + W
Sbjct: 399 EQRYKVFEPYW 409
>gi|239834270|ref|ZP_04682598.1| ATPase-like protein [Ochrobactrum intermedium LMG 3301]
gi|239822333|gb|EEQ93902.1| ATPase-like protein [Ochrobactrum intermedium LMG 3301]
Length = 727
Score = 50.9 bits (120), Expect = 8e-04, Method: Composition-based stats.
Identities = 27/181 (14%), Positives = 52/181 (28%), Gaps = 18/181 (9%)
Query: 40 LLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQK 99
+ E + P G G + DID +T P +
Sbjct: 65 RIVRELWRRNPGAMIGVPTG-APIGAWVLDID-PKHGGPDTLAALEAEHGALPATLTAET 122
Query: 100 PKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKV 159
+ + + + +D+ G G Y +A P + Y W +
Sbjct: 123 TSGGRHYFFKHKAGVRNRGALG--AGIDVRGDGGYVIAACSVPAVGQPYRWL---VDMEP 177
Query: 160 EDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGE 219
D P + E+ +P D ++ + + + N +Y R + + L
Sbjct: 178 VDAP-----------DWLLELVLPRSYDSTTMYQAPSVSGTINDRYVERAVQSELDDLAM 226
Query: 220 E 220
E
Sbjct: 227 E 227
>gi|317501013|ref|ZP_07959221.1| hypothetical protein HMPREF1026_01164 [Lachnospiraceae bacterium
8_1_57FAA]
gi|316897591|gb|EFV19654.1| hypothetical protein HMPREF1026_01164 [Lachnospiraceae bacterium
8_1_57FAA]
Length = 132
Score = 50.9 bits (120), Expect = 9e-04, Method: Composition-based stats.
Identities = 13/105 (12%), Positives = 33/105 (31%), Gaps = 9/105 (8%)
Query: 398 ENSKAKSTAQSLEAGSIFSITSDLLDSSS-RFLGEQDGILDLETGQKVKPTKELYITKST 456
++ K L + L+ R++ ++G D G+ ++ +
Sbjct: 15 QSGVIKRIYNLLITQPKVHREAYELNKQPVRWINFKNGYYDPVMGEMLEHNPDYLTINQI 74
Query: 457 GTPFVEGEPSQEFL-------DLVSGYFESEEVMDYFTRCVGMAL 494
P+ E ++ L ++ ++E F G +
Sbjct: 75 PFPYYP-EDCEQVLQGGENIKKYLASSLSNKEEQQTFWEYFGYCM 118
>gi|167583159|ref|ZP_02376033.1| DNA primase [Burkholderia thailandensis TXDOH]
Length = 950
Score = 50.9 bits (120), Expect = 9e-04, Method: Composition-based stats.
Identities = 12/49 (24%), Positives = 18/49 (36%), Gaps = 2/49 (4%)
Query: 224 GSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTF 272
D W MA+ E +G I WS+ Y+ + W +F
Sbjct: 17 DDRDTWRQAGMALKAEF--GEEGFAIWNEWSQGAQNYNARDARDVWKSF 63
>gi|57234140|ref|YP_181813.1| virulence-associated protein E, putative [Dehalococcoides
ethenogenes 195]
gi|57224588|gb|AAW39645.1| virulence-associated protein E, putative [Dehalococcoides
ethenogenes 195]
Length = 789
Score = 50.9 bits (120), Expect = 9e-04, Method: Composition-based stats.
Identities = 47/297 (15%), Positives = 91/297 (30%), Gaps = 42/297 (14%)
Query: 496 GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIR 555
G K + G G GKST+ + G++Y +A + M ++ +
Sbjct: 507 PGTKFDTVPVLDGAQGIGKSTMWKSLA---GDEYFSDALSLTDMDDKSGAE--------K 555
Query: 556 LMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPN---- 611
L G I+ I E + + K+K R +YG P N
Sbjct: 556 LQGFWIIEIGELAGMKKADIEKVKSFLSTSDDKYRPSYGKVVESHPRQCVVVATVNGEHG 615
Query: 612 KHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGL 671
+ RR+ ++ + + + EAK ++ +G K Y+ L
Sbjct: 616 YLRDITGN-----RRFWIVKCRQTENAVRWKITPEERDQIWAEAKYYYEQGEKLYLEGDL 670
Query: 672 DVDIPEVCLKA---------KEEE--------RQGTDTYQA--WIDDCCDIGENLWEESH 712
+ E A E+ D YQ ++D ++ E
Sbjct: 671 LAEAEEAQRSAMETDERQGLVEQYLSKLLPENWSEMDLYQRRNFLDGDDITSDSGTVERT 730
Query: 713 SLAKSYSEYREQELNY--DRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIK 767
++ + + E D K + + + Q R + + +R+ +
Sbjct: 731 EVSNA-EIWCECFGRNIADLKPTDSYAIAALMTQVDGWKRTNRRASQPLYGRQRLYE 786
>gi|331090165|ref|ZP_08339053.1| hypothetical protein HMPREF1025_02636 [Lachnospiraceae bacterium
3_1_46FAA]
gi|330402111|gb|EGG81683.1| hypothetical protein HMPREF1025_02636 [Lachnospiraceae bacterium
3_1_46FAA]
Length = 668
Score = 50.5 bits (119), Expect = 0.001, Method: Composition-based stats.
Identities = 14/56 (25%), Positives = 21/56 (37%), Gaps = 8/56 (14%)
Query: 219 EEFYNGSHDEWIPVVMAVHHETRGSSKGK--EIARRWSKQGSTYDEENFNYKWDTF 272
+ S +WI V MA+ +G I WS+ Y KW++F
Sbjct: 12 IDVATLSRADWIAVGMALK------EEGYPCSIWDDWSRNDKRYHPGECERKWNSF 61
>gi|325298294|ref|YP_004258211.1| hypothetical protein Bacsa_1151 [Bacteroides salanitronis DSM
18170]
gi|330995851|ref|ZP_08319747.1| hypothetical protein HMPREF9442_00819 [Paraprevotella xylaniphila
YIT 11841]
gi|324317847|gb|ADY35738.1| hypothetical protein Bacsa_1151 [Bacteroides salanitronis DSM
18170]
gi|329574382|gb|EGG55953.1| hypothetical protein HMPREF9442_00819 [Paraprevotella xylaniphila
YIT 11841]
Length = 413
Score = 50.5 bits (119), Expect = 0.001, Method: Composition-based stats.
Identities = 31/187 (16%), Positives = 61/187 (32%), Gaps = 25/187 (13%)
Query: 472 LVSGYFESE-EV-MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529
LV F + E+ MDY L K + + +GKST +N +K F
Sbjct: 111 LVRHIFGEQYELGMDYLQLLY---LQPIQKLPILLLVSEERNTGKSTFLNFLKALF---- 163
Query: 530 VINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTA 589
+ + + N G ++++ E N ++ ++K ++
Sbjct: 164 ----QNNVTFNTNEDFRSQFNSDWA---GKLLIVVDEVLLNRREDSERLKNLSTTLSYKV 216
Query: 590 RLNYGNTYSESPASFTPFIVPN--KHLFVRNPDD-AWWRRYIVIPFDKPIANRDASFAQK 646
+ E + N + + + +W R I + + D F QK
Sbjct: 217 EAKGKDR-DEIAFFAKFVLCSNNEHLPVIIDAGETRYWVRKI-----DRLQSDDTDFLQK 270
Query: 647 LETKYTL 653
L+ +
Sbjct: 271 LKAEIPA 277
>gi|116691425|ref|YP_836958.1| hypothetical protein Bcen2424_3324 [Burkholderia cenocepacia
HI2424]
gi|116649425|gb|ABK10065.1| conserved hypothetical protein [Burkholderia cenocepacia HI2424]
Length = 615
Score = 50.5 bits (119), Expect = 0.001, Method: Composition-based stats.
Identities = 12/65 (18%), Positives = 22/65 (33%), Gaps = 6/65 (9%)
Query: 207 NREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFN 266
+ L+ + + W+ + AV H G E+ WS+ YD +
Sbjct: 9 ADRVRTALATIPAD----DYTTWVDMAFAVKHGL--GEAGFELWDAWSQTAPNYDARSAR 62
Query: 267 YKWDT 271
W +
Sbjct: 63 ATWRS 67
>gi|220922585|ref|YP_002497887.1| bifunctional DNA primase/polymerase [Methylobacterium nodulans ORS
2060]
gi|219947192|gb|ACL57584.1| Bifunctional DNA primase/polymerase [Methylobacterium nodulans ORS
2060]
Length = 970
Score = 50.5 bits (119), Expect = 0.001, Method: Composition-based stats.
Identities = 29/177 (16%), Positives = 49/177 (27%), Gaps = 39/177 (22%)
Query: 17 GFKLIPLRLGDKRP---------QRLGKWEEQLLSSEKIDKL----PACGFGFVCGVGEQ 63
G+ + P K+P + G +I P G G
Sbjct: 20 GWPVFPCSPTTKQPLTRKESAPGAKDGGLHLATTDEAQIRAWWAKHPRAMIGIPTGARTG 79
Query: 64 PLYAFDIDSKDEKT---ANTFKDTFEILHGTPIVRIGQKPKILIP--FRMN--------- 109
+ D+D D A + E + G P I + + FR +
Sbjct: 80 NV--LDLDLGDPAVITGAAYLERLREHVGGIPETAIAETGSGGLHLWFRADPDAPIANGA 137
Query: 110 ----------KEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHR 156
EG + ++ +D+ G G Y + + + YTW P
Sbjct: 138 NICPALFIPPAEGATRADGRKAKGAAIDVRGEGGYVIVPPSVREDGRAYTWCPGPED 194
>gi|170736572|ref|YP_001777832.1| primase 2 [Burkholderia cenocepacia MC0-3]
gi|169818760|gb|ACA93342.1| Primase 2 [Burkholderia cenocepacia MC0-3]
Length = 615
Score = 50.5 bits (119), Expect = 0.001, Method: Composition-based stats.
Identities = 12/65 (18%), Positives = 22/65 (33%), Gaps = 6/65 (9%)
Query: 207 NREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFN 266
+ L+ + + W+ + AV H G E+ WS+ YD +
Sbjct: 9 ADRVRTALATIPAD----DYTTWVDMAFAVKHGL--GEAGFELWDAWSQTAPNYDARSAR 62
Query: 267 YKWDT 271
W +
Sbjct: 63 ATWRS 67
>gi|298385938|ref|ZP_06995495.1| conserved hypothetical protein [Bacteroides sp. 1_1_14]
gi|298261166|gb|EFI04033.1| conserved hypothetical protein [Bacteroides sp. 1_1_14]
Length = 405
Score = 50.5 bits (119), Expect = 0.001, Method: Composition-based stats.
Identities = 30/200 (15%), Positives = 62/200 (31%), Gaps = 31/200 (15%)
Query: 462 EGEPSQEFLDLVSGYFESE-EV-MDYFTRCVGMALLGGNKAQRFIHIR---GVGGSGKST 516
E + L+ FE + E+ +DY Q+ + +GK+T
Sbjct: 91 EEGDFPDIEKLLHHIFEEQYELGLDYMQLLY------TQPTQKLPILLLVSEERNTGKTT 144
Query: 517 LMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAA 576
+N +K F D G ++++ E + ++
Sbjct: 145 FLNFLKSIF-QDNATFNTNEDFRSQFN----------ADWAGKLLIVVDEVLLSRREDSE 193
Query: 577 KIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDA---WWRRYIVIPFD 633
++K ++ + E + N L+ D +W R I
Sbjct: 194 RLKNLSTAQTYKVEAKGKDR-QEVNFFAKFVLCSNNELYPVIIDPGENRYWVRKI----- 247
Query: 634 KPIANRDASFAQKLETKYTL 653
+P+ + D +F KL+ +
Sbjct: 248 RPLESDDTNFLLKLKEQIPA 267
>gi|15617554|ref|NP_258354.1| DNA helicase [Spodoptera litura NPV]
gi|15553290|gb|AAL01768.1|AF325155_80 DNA helicase [Spodoptera litura NPV]
Length = 1235
Score = 50.5 bits (119), Expect = 0.001, Method: Composition-based stats.
Identities = 26/154 (16%), Positives = 50/154 (32%), Gaps = 12/154 (7%)
Query: 486 FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545
+ + + I++ G GKS+ +L+ S + +
Sbjct: 927 MMHFTASLAIPSDYEKMCIYLNGESNCGKSSFFDLLDTII--VAHKRDSMSYNTSKKETD 984
Query: 546 AGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMT-GGDCMTARLNYGNTYSESPASF 604
+AN + +L +I+E E N A K + Y + A++
Sbjct: 985 EMEANKLISQLY-----VINEMKE---CNDAFFKNSADSSKSNSVCRKYEGSQKYE-ANY 1035
Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN 638
IV NK L +++ D R+ V+
Sbjct: 1036 KLLIVNNKPLCIQDYDKGVRNRFCVVYMKHVFVE 1069
>gi|150008750|ref|YP_001303493.1| hypothetical protein BDI_2140 [Parabacteroides distasonis ATCC
8503]
gi|149937174|gb|ABR43871.1| conserved hypothetical protein [Parabacteroides distasonis ATCC
8503]
Length = 413
Score = 50.5 bits (119), Expect = 0.001, Method: Composition-based stats.
Identities = 31/187 (16%), Positives = 61/187 (32%), Gaps = 25/187 (13%)
Query: 472 LVSGYFESE-EV-MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529
LV F + E+ MDY L K + + +GKST +N +K F
Sbjct: 111 LVRHIFGEQYELGMDYLQLLY---LQPIQKLPILLLVSEERNTGKSTFLNFLKALF---- 163
Query: 530 VINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTA 589
+ + + N G ++++ E N ++ ++K ++
Sbjct: 164 ----QNNVTFNTNEDFRSQFNSDWA---GKLLIVVDEVLLNRREDSERLKNLSTTLSYKV 216
Query: 590 RLNYGNTYSESPASFTPFIVPN--KHLFVRNPDD-AWWRRYIVIPFDKPIANRDASFAQK 646
+ E + N + + + +W R I + + D F QK
Sbjct: 217 EAKGKDR-DEIAFFAKFVLCSNNEHLPVIIDAGETRYWVRKI-----DRLRSDDTDFLQK 270
Query: 647 LETKYTL 653
L+ +
Sbjct: 271 LKAEIPA 277
>gi|325288511|ref|YP_004264692.1| Primase 2 [Syntrophobotulus glycolicus DSM 8271]
gi|324963912|gb|ADY54691.1| Primase 2 [Syntrophobotulus glycolicus DSM 8271]
Length = 748
Score = 50.5 bits (119), Expect = 0.001, Method: Composition-based stats.
Identities = 23/129 (17%), Positives = 40/129 (31%), Gaps = 14/129 (10%)
Query: 210 ITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQG-STYDEENFNYK 268
+ L + W+ V MA+ ++ WS++ Y K
Sbjct: 7 LLDLLKHIDPA--QLDYATWLSVGMALKEAGYTAAD----WDEWSRRDIGRYHAGECFRK 60
Query: 269 WDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDA--YNKAMFSIYKKGHF-- 324
WD+F T T +L HG + + D+ K + +KG
Sbjct: 61 WDSF---RGASTPVTAGTIVALAKDHGWRPERDIGYELGWDSTIGGKDDLVVIQKGWLEG 117
Query: 325 LYTADTKAW 333
A+ +W
Sbjct: 118 REVAEPDSW 126
>gi|238020410|ref|ZP_04600836.1| hypothetical protein GCWU000324_00291 [Kingella oralis ATCC 51147]
gi|237867390|gb|EEP68396.1| hypothetical protein GCWU000324_00291 [Kingella oralis ATCC 51147]
Length = 1444
Score = 50.5 bits (119), Expect = 0.001, Method: Composition-based stats.
Identities = 18/76 (23%), Positives = 28/76 (36%), Gaps = 5/76 (6%)
Query: 206 TNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENF 265
T E+ LS S+ +W P+ A+ GK++ WS+QG Y
Sbjct: 9 TYDEVRTALSYIP---TPSSYADWYPMAYAIKDAL--GENGKDLWHDWSRQGDNYKASVA 63
Query: 266 NYKWDTFDFEEIGDTA 281
W + + G T
Sbjct: 64 EATWKSAKSKAGGITV 79
>gi|331091444|ref|ZP_08340282.1| hypothetical protein HMPREF9477_00925 [Lachnospiraceae bacterium
2_1_46FAA]
gi|330404000|gb|EGG83550.1| hypothetical protein HMPREF9477_00925 [Lachnospiraceae bacterium
2_1_46FAA]
Length = 741
Score = 50.5 bits (119), Expect = 0.001, Method: Composition-based stats.
Identities = 19/72 (26%), Positives = 28/72 (38%), Gaps = 13/72 (18%)
Query: 203 RQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEI--ARRWSKQGSTY 260
R Y ++I FL+ ++ EWI V MA+ G ++ WS+ S Y
Sbjct: 3 RGYDIKQILDFLNPS-----ELNYQEWIYVGMALK------EDGYDVSVWDSWSRSDSRY 51
Query: 261 DEENFNYKWDTF 272
KW F
Sbjct: 52 HSGECQRKWAGF 63
>gi|325926124|ref|ZP_08187485.1| hypothetical protein XPE_1449 [Xanthomonas perforans 91-118]
gi|325543469|gb|EGD14891.1| hypothetical protein XPE_1449 [Xanthomonas perforans 91-118]
Length = 871
Score = 50.5 bits (119), Expect = 0.001, Method: Composition-based stats.
Identities = 74/473 (15%), Positives = 138/473 (29%), Gaps = 90/473 (19%)
Query: 293 HHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKA-WYKKDKNNVYIWS------ 345
+ + L+A D MF + F ++ W+ D
Sbjct: 264 NEARYQGDLLVARSAVDKGL-LMFEHDGRNDFWLDYRSRLYWFDFDTQRFDKLRKEKLGD 322
Query: 346 LTLDKITASIMNFLVSMKEDVFDLSE------EPEDNNKNSKSPRFWF------------ 387
+ D L +K + + E + + W+
Sbjct: 323 IDADDGDEVAAEDLKKIKRAACSVQKIANCYPEALYFQRQEVTDESWYYFRVDFPHDGPS 382
Query: 388 -NTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDS---------------------- 424
+ +V S+ K SL AG++F+ T LD
Sbjct: 383 VKGTFTGGHVASASEFKKRLISLAAGAMFTGTGHQLDRLIEEQTEAIKTVDAIDFVGYSK 442
Query: 425 --SSRFLGEQDGILDL--ETGQKVKPTKELYI------TKSTG------TPFVEGEPSQE 468
+ LG D+ G V +E Y K+T +
Sbjct: 443 EHRAYLLG------DMAVRDGDLVTANEEDYFEFDKLRLKTTQKSIRLEIQRDADAFRAD 496
Query: 469 FLDLVSGYFESEEVMDYFTRCVGMALLGGNK--AQRFIHI--RGVGGSGKSTLMNLIKYA 524
+L + F + ++ T G + + F + G G+GK+TL+ +
Sbjct: 497 WLPWLWQCFGTHGMVA-MTFWFGSLFAEQIRAGHKSFPFLEATGEAGAGKTTLLTFLWKL 555
Query: 525 FG-NQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE--NDEINAAKIKQM 581
G + Y A R G+ + + L+ + SE ++ + ++K
Sbjct: 556 LGRSDYEGFDPAKSSKAGRARAMGQVSGMPVVLLEAD---RSEPDKAHSKTFEWDELKDF 612
Query: 582 TGGDCMTAR--LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP-IAN 638
GG + R N GN E P T I N + +A R + + F +P +
Sbjct: 613 FGGGTLATRGVRNGGNETYEPPFRGTIVITQN---AAVDASEAILTRIVKLHFKRPQVTT 669
Query: 639 RDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTD 691
A L E + ++ ++ + + E + + R D
Sbjct: 670 ESRIAADNLNALQVEEVSHFLVRAIR--QERAILDLFAERVKVFEAKLRAQQD 720
>gi|307269951|ref|ZP_07551277.1| primase 2 [Enterococcus faecalis TX4248]
gi|306513741|gb|EFM82347.1| primase 2 [Enterococcus faecalis TX4248]
Length = 758
Score = 50.5 bits (119), Expect = 0.001, Method: Composition-based stats.
Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 6/64 (9%)
Query: 209 EITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYK 268
++ L + EW+ V MA+ E + +WS+ S Y K
Sbjct: 19 DLIELLEYIDPASLG--YQEWVNVGMALKQEGYTAVD----WDQWSQSDSRYHSGECFKK 72
Query: 269 WDTF 272
W++F
Sbjct: 73 WESF 76
>gi|119869598|ref|YP_939550.1| hypothetical protein Mkms_3566 [Mycobacterium sp. KMS]
gi|119695687|gb|ABL92760.1| conserved hypothetical protein [Mycobacterium sp. KMS]
Length = 717
Score = 50.5 bits (119), Expect = 0.001, Method: Composition-based stats.
Identities = 37/236 (15%), Positives = 70/236 (29%), Gaps = 26/236 (11%)
Query: 13 AIHNGFK-LIPLRLGDK--RPQRLGKWEEQLLSSEKI----DKLPACGFGFVCGVGEQPL 65
G++ +IP+ DK P + ++ E + P G +
Sbjct: 38 YADLGWRGVIPVDPRDKGGVPAGFTGYGGIDVTPENMAWFAKSKPGHNIGL---RLPDGV 94
Query: 66 YAFDIDSKDEK-TANTFKDTFEILHGTPIV-RIGQKPKILIPFRMNKEGIKKKKTTESTQ 123
D+D+ K A+TF + P R + + R+ + K T
Sbjct: 95 IGIDVDAYGPKKGADTFAEAQGRWGALPPSYRSTSRDDGISGIRLYRVPAGTKLETIIEF 154
Query: 124 GHLDILG------CGQYFVAYN-IHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLF-K 175
LDI ++ + IH KT + Y W + ++ P +D+ L
Sbjct: 155 KDLDIRDIEIVQRHHRHVQCWPSIHDKTGQRYRWVSELDGSAMDTPPA--PDDLPNLPAA 212
Query: 176 FFQEITVPLVKDKK----SIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHD 227
+ + + + P T + R G+ + D
Sbjct: 213 WVAALRAESGSNGTPLNGAEAPVDVQTALTEGDASPRVAELLARAIGDCYGGSRFD 268
>gi|145592628|ref|YP_001156925.1| hypothetical protein Strop_0062 [Salinispora tropica CNB-440]
gi|145301965|gb|ABP52547.1| hypothetical protein Strop_0062 [Salinispora tropica CNB-440]
Length = 391
Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 47/283 (16%), Positives = 70/283 (24%), Gaps = 61/283 (21%)
Query: 5 QWKEQAKQAIHNGFKLIPLRLGDKRP-------------------QRLGKWEEQLLSSEK 45
+E A A G+ + PLR DKRP G ++
Sbjct: 82 TLREVALAAALRGWHIFPLRPDDKRPAFPDHLADACTGRDPRCRNGHTGWEARATTDPDR 141
Query: 46 IDK-LPACGFGFVCGVGEQPLYAFDIDSKDEK----------TANTFKDTFEILHGTPIV 94
I + +G G L D+D + A + D F L T
Sbjct: 142 IRRGWSETPWGVGIACGPSGLVVIDLDVRKPDQDAPPGNPHPAATSGIDVFAALCETAGQ 201
Query: 95 RI---------GQKPKILIPFRM--NKEGIKKKKT--TESTQGHLDILGCGQYFVAYNIH 141
I G+ L FR + ++ +D G Y VA
Sbjct: 202 PIPDDTYAVTTGRGGSHLY-FRHPADSPALRNTAGERGNGLGWLVDTRAHGGYVVAAG-S 259
Query: 142 PKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNN 201
+ YT D P V L + E P + +
Sbjct: 260 TVAGRSYT--------VARDLP------VAELPGWLAERLAPAPLPPQRPV-VVDLPTGR 304
Query: 202 NRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSS 244
Y + IT L G + + V +
Sbjct: 305 TGAYLDAAITRQLDHLRRAA-EGERNHTLYVSAVAFGQLAAGG 346
>gi|94266791|ref|ZP_01290456.1| RecA-family ATPase-like [delta proteobacterium MLMS-1]
gi|93452534|gb|EAT03120.1| RecA-family ATPase-like [delta proteobacterium MLMS-1]
Length = 700
Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 35/208 (16%), Positives = 54/208 (25%), Gaps = 25/208 (12%)
Query: 8 EQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKL----PACGFGFVCGVGEQ 63
A + + P KRP +++ E+I P GF G G
Sbjct: 46 NAALEYAAKDRPVFPCDPATKRPLTKNGFKDATTDPEQIKTWWRKHPRALIGFPTGNG-- 103
Query: 64 PLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQ 123
L D+D + P + P+ F + +K
Sbjct: 104 -LMVLDVD--PPHGPESLAALEAKHGPLPATLEQRSPRGRHLFLASNHDVKISANKLGP- 159
Query: 124 GHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVP 183
LDI G Y + K Y WT K E P I+
Sbjct: 160 -GLDIRAKGGYVIVSPSVNSEGKAYQWTN-----KAEPAP------APEWL--IDAISEA 205
Query: 184 LVKDKKSIIPSKTWTNNN-NRQYTNREI 210
+ + ++ N + R I
Sbjct: 206 TTRATPTPKTGDGRPGDDFNERGDIRPI 233
>gi|91784038|ref|YP_559244.1| putative DNA replication primase [Burkholderia xenovorans LB400]
gi|91687992|gb|ABE31192.1| Putative DNA replication primase [Burkholderia xenovorans LB400]
Length = 621
Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 14/74 (18%), Positives = 27/74 (36%), Gaps = 9/74 (12%)
Query: 224 GSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKK 283
+ W+ + A+ H +G EI WS+ + Y++ W +
Sbjct: 22 DDYATWVDMAFALKHGF--GDEGFEIWDAWSRTAANYNDRAARTTWRSASASGG------ 73
Query: 284 RSTFTSLFYHHGKL 297
T +LF+H +
Sbjct: 74 -KTLATLFWHARQH 86
>gi|257080671|ref|ZP_05575032.1| RecA-family ATPase [Enterococcus faecalis E1Sol]
gi|256988701|gb|EEU76003.1| RecA-family ATPase [Enterococcus faecalis E1Sol]
Length = 743
Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 6/64 (9%)
Query: 209 EITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYK 268
++ L + EW+ V MA+ E + +WS+ S Y K
Sbjct: 10 DLIELLEYIDPASLG--YQEWVNVGMALKQEGYTAVD----WDQWSQSDSRYHSGECFKK 63
Query: 269 WDTF 272
W++F
Sbjct: 64 WESF 67
>gi|213028729|ref|ZP_03343176.1| bacteriophage P4 DNA primase [Salmonella enterica subsp. enterica
serovar Typhi str. 404ty]
Length = 167
Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 21/154 (13%), Positives = 43/154 (27%), Gaps = 35/154 (22%)
Query: 611 NKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYIS 668
N + + RR ++I F + IA RD K+ + ++ +
Sbjct: 1 NNPMRFTDRSGGVSRRRVIIHFPEQIAPEERDPQLRDKIARE-----LAIIVRQLMQ--- 52
Query: 669 KGLDVDIPEVCLKAKEEE---------RQGTDTYQAWID--DCCDIGENLWEESHS---- 713
P + + ++ D + + ++ + S
Sbjct: 53 ---KFSDPMTARTLLQSQQNSDEALSIKRDADPTFDFCGYLEMLPQTNGMFMGNASIIPR 109
Query: 714 -----LAKSYSEYREQELNYDRKRISTRTVTLNL 742
L +Y Y E R +S + L L
Sbjct: 110 NYRKYLYHAYLAYMEANG--YRNVLSLKMFGLGL 141
>gi|288925203|ref|ZP_06419138.1| conserved hypothetical protein [Prevotella buccae D17]
gi|288337968|gb|EFC76319.1| conserved hypothetical protein [Prevotella buccae D17]
Length = 415
Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 29/191 (15%), Positives = 59/191 (30%), Gaps = 25/191 (13%)
Query: 467 QEFLDLVSGYFESE-EV-MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524
L F + E+ MDY L K + + +GKST +N +K
Sbjct: 106 PHIEALARHIFGEQYELGMDYLQLLY---LQPIEKLPILLLVSEERNTGKSTFLNFLKAL 162
Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGG 584
FG N + N G ++++ E + ++ ++K ++
Sbjct: 163 FGGNVTFNTNEDF--------RSQFNSDWA---GKLLILVDEVLLDRREDSERLKNLSTT 211
Query: 585 DCMTARLNYGNTYSESPASFTPFIVPNK--HLFVRNPDD-AWWRRYIVIPFDKPIANRDA 641
+ E + N + + + +W R + I D
Sbjct: 212 LSYKVEAKGKDR-DEISFFAKFVLCSNNERLPVIIDTGETRYWVRKV-----GRIEKDDT 265
Query: 642 SFAQKLETKYT 652
F Q+++ +
Sbjct: 266 DFLQRVKEEIP 276
>gi|114679948|ref|YP_758398.1| helicase [Leucania separata nuclear polyhedrosis virus]
gi|39598679|gb|AAR28865.1| helicase [Leucania separata nuclear polyhedrosis virus]
Length = 1251
Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 28/156 (17%), Positives = 53/156 (33%), Gaps = 16/156 (10%)
Query: 486 FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI--MQNRP 543
+ + + I++ G GKS+ +L+ V + S + +
Sbjct: 943 MMHFTASLAIPNDYEKLCIYLNGESNCGKSSFFDLLDTII----VAHKRDSAVYNTTKKE 998
Query: 544 PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMT-GGDCMTARLNYGNTYSESPA 602
+ +AN + +L +I+E E N A K + Y + A
Sbjct: 999 TDEMEANKLISQLY-----VINEMKE---CNDAFFKNSADSSKSNSVCRKYEGSQKYE-A 1049
Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN 638
++ IV NK L +R+ D R+ V+
Sbjct: 1050 NYKLLIVNNKPLCIRDYDKGVRNRFCVVYMKHVFVE 1085
>gi|312900435|ref|ZP_07759744.1| primase 2 [Enterococcus faecalis TX0470]
gi|311292457|gb|EFQ71013.1| primase 2 [Enterococcus faecalis TX0470]
Length = 752
Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 14/64 (21%), Positives = 24/64 (37%), Gaps = 6/64 (9%)
Query: 209 EITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYK 268
++ L + EW+ V MA+ E + +WS+ S Y K
Sbjct: 19 DLIELLEYIDPASLG--YQEWVNVGMALKQEGYTAVD----WDQWSQSDSRYHSGECFKK 72
Query: 269 WDTF 272
W++F
Sbjct: 73 WESF 76
>gi|301165045|emb|CBW24613.1| conserved hypothetical protein [Bacteroides fragilis 638R]
Length = 396
Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 32/187 (17%), Positives = 65/187 (34%), Gaps = 25/187 (13%)
Query: 472 LVSGYFESE-EV-MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529
L+ F + E+ MDY L K + + +GKST +N +K F
Sbjct: 94 LMRHIFGEQYELGMDYMQLLY---LQPTQKLPIVLLVSEERNTGKSTFLNFLKAVF---- 146
Query: 530 VINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTA 589
E + + N G ++++ E N ++ ++K ++
Sbjct: 147 ----ENNVTFNTNEDFRSQFNSDWA---GKLLIVVDEVLLNRREDSERLKNLSTTFTYKV 199
Query: 590 RLNYGNTYSESPASFTPFIVPNK--HLFVRNPDD-AWWRRYIVIPFDKPIANRDASFAQK 646
+ +E + N + + + +W R I+ P+ + D +F QK
Sbjct: 200 EAKGKDR-TEIAFFAKFVLCSNNEYLPILIDVGETRYWVRKIM-----PLQSDDTNFLQK 253
Query: 647 LETKYTL 653
L+ +
Sbjct: 254 LKAEIPA 260
>gi|303236520|ref|ZP_07323105.1| virulence-associated protein E [Prevotella disiens FB035-09AN]
gi|302483268|gb|EFL46278.1| virulence-associated protein E [Prevotella disiens FB035-09AN]
Length = 404
Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 39/255 (15%), Positives = 86/255 (33%), Gaps = 23/255 (9%)
Query: 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMG 558
+ + + G G K+T ++L+ ++ P+ + +
Sbjct: 146 RNHTCLVLTGEQGKFKTTFLDLLC-------PEELKSYLFTGKIDPQGKDVQTLIAEYLF 198
Query: 559 SRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRN 618
I I + ++ + ++K + + R Y E P + N + F+ +
Sbjct: 199 --INIDDQLKALNKRDENELKNLITTPRVKYRRPYDTYIEEYPHLASFMASVNGNDFLTD 256
Query: 619 PDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEV 678
P + RR+ +PF+ + DA+ ++ Y+ + W + + + +
Sbjct: 257 PTGS--RRF--LPFEVEHIDIDAAKEIDIDKVYSEAVELWRVD-YHYW----FNEEEIAE 307
Query: 679 CLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738
+ E + T Y + G + + SE Y +S R +
Sbjct: 308 LHQESEGFQVQTAEY-----EMLLKGMEKPAATEESYMTTSEILNYLRGYTTLNLSERRM 362
Query: 739 TLNLKQKGFIGGIKR 753
LK+ GF+ KR
Sbjct: 363 GEALKKAGFLRKSKR 377
>gi|301299425|ref|ZP_07205704.1| primase C-terminal domain protein [Lactobacillus salivarius
ACS-116-V-Col5a]
gi|300852961|gb|EFK80566.1| primase C-terminal domain protein [Lactobacillus salivarius
ACS-116-V-Col5a]
Length = 752
Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 14/90 (15%)
Query: 210 ITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEI--ARRWSKQGS-TYDEENFN 266
+ L N + EW+ V MA+ + +G + WS++ S Y +
Sbjct: 8 LLELLDYIDPSMLN--YQEWVNVGMALKY------EGYSVSDWDNWSQRDSTRYHDGETE 59
Query: 267 YKWDTFDFEEIGDTAKKRSTFTSLFYHHGK 296
KW+TFD T +T T L +G
Sbjct: 60 RKWNTFDGSTKPVT---GATITQLAKDNGW 86
>gi|320163552|gb|EFW40451.1| predicted protein [Capsaspora owczarzaki ATCC 30864]
Length = 226
Score = 50.1 bits (118), Expect = 0.001, Method: Composition-based stats.
Identities = 23/103 (22%), Positives = 38/103 (36%), Gaps = 9/103 (8%)
Query: 418 TSDLLDSSS---RFLGEQDGILDLETGQKVKPT---KELYITKSTGT--PFVEGEPSQEF 469
++ ++D + L + G L L G + Y++ P + + E
Sbjct: 108 SNKIIDENGALWFMLPIKGGELVLVNGTGWTHRKRVRTDYMSHFANIDLPDDDFDRCTEL 167
Query: 470 LDLVSG-YFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGG 511
S ++E + D+ GMAL G QRF I G G
Sbjct: 168 RKFTSQWMCKNEAMTDFLLALGGMALFGYRDEQRFWIIVGKGA 210
>gi|325860203|ref|ZP_08173328.1| hypothetical protein HMPREF9303_0578 [Prevotella denticola CRIS
18C-A]
gi|325482290|gb|EGC85298.1| hypothetical protein HMPREF9303_0578 [Prevotella denticola CRIS
18C-A]
Length = 396
Score = 50.1 bits (118), Expect = 0.002, Method: Composition-based stats.
Identities = 34/194 (17%), Positives = 64/194 (32%), Gaps = 28/194 (14%)
Query: 468 EFLD---LVSGYFESE-EV-MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIK 522
EFL L+ F + E+ MDY L K + + +GKST +N +K
Sbjct: 87 EFLHIESLIRHIFGEQYELGMDYLQLLY---LQPVQKLPILLMVSEERNTGKSTFLNFLK 143
Query: 523 YAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMT 582
F V D + G ++++ E N ++ ++K ++
Sbjct: 144 AVF-QNNVTFNTNEDFRSQFN----------VDWAGKLLIVVDEVLLNRREDSERLKNLS 192
Query: 583 GGDCMTARLNYGNTYSESPASFTPFIVPNK--HLFVRNPDD-AWWRRYIVIPFDKPIANR 639
+ E + N + + + +W R I + + +
Sbjct: 193 TTLSYKVEAKGKDR-DEISFFAKFVLCSNNELLPVIIDVGETRYWVRKI-----ERLKSD 246
Query: 640 DASFAQKLETKYTL 653
D F QKL+ +
Sbjct: 247 DTDFLQKLKAEIPA 260
>gi|227487379|ref|ZP_03917695.1| bifunctional DNA primase/polymerase [Corynebacterium
glucuronolyticum ATCC 51867]
gi|227092603|gb|EEI27915.1| bifunctional DNA primase/polymerase [Corynebacterium
glucuronolyticum ATCC 51867]
Length = 300
Score = 50.1 bits (118), Expect = 0.002, Method: Composition-based stats.
Identities = 38/210 (18%), Positives = 64/210 (30%), Gaps = 37/210 (17%)
Query: 17 GFKLIPLRLGDKRPQRLG----KWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDS 72
G +++PL KRP+ G + +E K P G + D+D
Sbjct: 60 GLEVLPLD--GKRPRIHGGVNAATTDTEQVAEWWSKWPYANIGI---RVPEGCLVVDVDP 114
Query: 73 KDEKTANTFKDTFEI----LHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDI 128
++ A+ ++ F G G + + + T +D+
Sbjct: 115 RNGGLAD-YRRMFPHGSCPHTGRTFTGSG-----GLHLYFTLPYDGETRGKYGT--GIDL 166
Query: 129 LGCGQYFVAYN-IHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKF--FQEITVPLV 185
G G++ VA IHP T + Y W P + E L + P V
Sbjct: 167 QGRGKFLVAPPSIHPTTGRAYAW-----------WPFVPPEKWAPLPSWCYLDVYKPPRV 215
Query: 186 KDKK--SIIPSKTWTNNNNRQYTNREITAF 213
++ I K N R +
Sbjct: 216 APREPLEIRRYKAQHAKNPGAGLIRAVAEA 245
>gi|237725041|ref|ZP_04555522.1| conserved hypothetical protein [Bacteroides sp. D4]
gi|255689901|ref|ZP_05413576.1| conserved hypothetical protein [Bacteroides finegoldii DSM 17565]
gi|229436779|gb|EEO46856.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
gi|260624507|gb|EEX47378.1| conserved hypothetical protein [Bacteroides finegoldii DSM 17565]
Length = 405
Score = 50.1 bits (118), Expect = 0.002, Method: Composition-based stats.
Identities = 36/205 (17%), Positives = 67/205 (32%), Gaps = 29/205 (14%)
Query: 455 STGTPFVEGEPSQEFLDLVSGYFESE-EV-MDYFTRCVGMALLGGNKAQRFIHIRGVGGS 512
T P + LV F + E+ MDY L K + + +
Sbjct: 86 ITHIPVEG--DFKHIRSLVEHIFGEQYELGMDYLQLLY---LKPTQKLPILLLVSEERNT 140
Query: 513 GKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDE 572
GKST +N +K F V D G ++++ E N
Sbjct: 141 GKSTFLNFLKALF-QDNVTFNTNEDFRSQFN----------ADWAGKLMIVVDEVLLNRR 189
Query: 573 INAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVP----NKHLFVRNPDDAWWRRYI 628
++ ++K ++ + Y F F++ N +++ + +W R +
Sbjct: 190 EDSERLKNLSTAHSYKMESKGKDRYEV--QFFAKFVLCSNNENFPVYIEPEETRYWVRKV 247
Query: 629 VIPFDKPIANRDASFAQKLETKYTL 653
+ + D SF QKL+ +
Sbjct: 248 -----RRLEKDDTSFLQKLKNEIPA 267
>gi|291010738|gb|ADD71726.1| DNA primase/polymerase [Leuconostoc phage 1-A4]
Length = 251
Score = 50.1 bits (118), Expect = 0.002, Method: Composition-based stats.
Identities = 46/271 (16%), Positives = 83/271 (30%), Gaps = 31/271 (11%)
Query: 7 KEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLY 66
KE A I G ++ L K P G W+ + L+ E++D+ G+G V
Sbjct: 3 KELAHYFIDQGIHVVALTPKKKYPNYKG-WQTKRLTIEQVDRALDSGYGLGI-VPHGEFI 60
Query: 67 AFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGH- 125
D+D+ E AN ++ + K T E
Sbjct: 61 VVDLDADHESGANGVENFIANFDDYATI----------------TAYKDNSTNEHRFYQN 104
Query: 126 ---LDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITV 182
L+I G + + +K T P + F+ D E + + F+ + V
Sbjct: 105 TYGLNIRKTGDNAIIDGVDIFSKDNLITTLPFYYFEDLDLTKPFLEQLAPSPERFELLKV 164
Query: 183 PLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRG 242
K +P +T +N Y + + + + + M
Sbjct: 165 YEDKPV--EVPKSNFTKHNIENYLKKVPQFEVGGRSASYRKLIYTMVVRRGMVY------ 216
Query: 243 SSKGKEIARRWSKQGSTYDEENFNYKWDTFD 273
++ +W G Y EE + +
Sbjct: 217 -EDARDAIIKWDADGINYQEEEPTQFYHSIR 246
>gi|255066375|ref|ZP_05318230.1| conserved hypothetical protein [Neisseria sicca ATCC 29256]
gi|255049255|gb|EET44719.1| conserved hypothetical protein [Neisseria sicca ATCC 29256]
Length = 946
Score = 50.1 bits (118), Expect = 0.002, Method: Composition-based stats.
Identities = 35/267 (13%), Positives = 85/267 (31%), Gaps = 32/267 (11%)
Query: 513 GKSTLMN-LIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEND 571
GKST ++K FG +Y+ + + + L+ + + I E + +D
Sbjct: 646 GKSTFGEKVVKELFG-EYLRQLDQNALESRFN----------ASLLFALVTIFEEISPSD 694
Query: 572 -EIN-AAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKH-LFVRNPDDAWWRRYI 628
+N K+K M D + + + + ++ + + + D RR++
Sbjct: 695 ERLNVIGKLKNMITSDVIMVERKGRDAEKHNDFNSFIIFSNDERSIPIESND----RRFM 750
Query: 629 VIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGV-KAYISKGLDVDIPEVCLKAKEEER 687
V+ ++ ++ Q ++ FL + Y E +
Sbjct: 751 VLSCNRKYSDAQYEALQAEIDNGGVDEFARFLYALPLMYSDGDTRRAFTPHTKPLTTEIK 810
Query: 688 QGTDTY-----QAWIDDCCDIG---ENLWEESHSLAKSYSEYREQELNYDRKRISTRTVT 739
+ +A++DD + + L +Y ++ + + +
Sbjct: 811 RRMINLNKPSWEAFLDDWWRGDLGLPFISCAAGDLWSAYKKWCIDTKTF---HMQQKNFY 867
Query: 740 LNLKQKGFIGGIKREKIEKEWKSKRII 766
N+ ++ I + K R
Sbjct: 868 ANMAKR-LADLRSTVTIHGQPKKVRFF 893
>gi|237735523|ref|ZP_04566004.1| recA-family ATPase [Mollicutes bacterium D7]
gi|229381268|gb|EEO31359.1| recA-family ATPase [Coprobacillus sp. D7]
Length = 738
Score = 50.1 bits (118), Expect = 0.002, Method: Composition-based stats.
Identities = 26/133 (19%), Positives = 43/133 (32%), Gaps = 15/133 (11%)
Query: 209 EITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGST-YDEENFNY 267
++ L+ N + EW V MA+ +E S+ WS++ S Y ++
Sbjct: 6 DLIEILNYIDPSRLN--YQEWCCVGMALKYEGYSVSE----WDSWSRRDSKRYHDKECLK 59
Query: 268 KWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAY---NKAMFSIYKKGHF 324
KWDTF + T G P A D N + ++
Sbjct: 60 KWDTFTGSGV-----TGGTIVQYAKDQGWTPPVKDGAGHELDWDDVINAKDEKVIVDRNW 114
Query: 325 LYTADTKAWYKKD 337
L + + D
Sbjct: 115 LEVKEVREPRGWD 127
>gi|321399110|emb|CBZ08451.1| conserved hypothetical protein [Leishmania infantum JPCM5]
Length = 545
Score = 50.1 bits (118), Expect = 0.002, Method: Composition-based stats.
Identities = 30/154 (19%), Positives = 46/154 (29%), Gaps = 23/154 (14%)
Query: 153 PPHRFKVEDTPLLSEEDV--EYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTN--- 207
D P S E + + L++ ++ + P T Y N
Sbjct: 387 TSLLAHESDAPAESAEQLHRAAVLDATTRHRFKLIRPRQIMGPQATQAV-EYDAYGNVVP 445
Query: 208 ------------REITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSK 255
+ +TA L S+D W+ V +A+H+ E R+S
Sbjct: 446 PFLTEAAKWRRFKAVTAKLRTLPPRAAE-SYDVWVRVGLALHN-FSNEDHVFEEWVRFSL 503
Query: 256 QGS-TYDEENFNYKWDTFDFEEIGDTAKKRSTFT 288
+ Y E KW FE D R F
Sbjct: 504 KSPLKYSREVCRKKW--MQFERNPDALNWRRGFN 535
>gi|53721419|ref|YP_110404.1| hypothetical protein BPSS0382 [Burkholderia pseudomallei K96243]
gi|52211833|emb|CAH37832.1| hypothetical protein BPSS0382 [Burkholderia pseudomallei K96243]
Length = 955
Score = 49.7 bits (117), Expect = 0.002, Method: Composition-based stats.
Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 2/49 (4%)
Query: 224 GSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTF 272
D W MA+ E +G + WS+ Y+ + W +F
Sbjct: 22 DDRDTWRQAGMALKAEF--GEEGFTLWNEWSQGAQNYNVRDARDVWKSF 68
>gi|322497389|emb|CBZ32464.1| unnamed protein product [Leishmania donovani BPK282A1]
Length = 545
Score = 49.7 bits (117), Expect = 0.002, Method: Composition-based stats.
Identities = 30/154 (19%), Positives = 46/154 (29%), Gaps = 23/154 (14%)
Query: 153 PPHRFKVEDTPLLSEEDV--EYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTN--- 207
D P S E + + L++ ++ + P T Y N
Sbjct: 387 TSLLAHESDAPAESAEQLHRAAVLDATTRHRFKLIRPRQIMGPQATQAV-EYDAYGNVVP 445
Query: 208 ------------REITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSK 255
+ +TA L S+D W+ V +A+H+ E R+S
Sbjct: 446 PFLTEAAKWRRFKAVTAKLRTLPPRAAE-SYDVWVRVGLALHN-FSNEDHVFEEWVRFSL 503
Query: 256 QGS-TYDEENFNYKWDTFDFEEIGDTAKKRSTFT 288
+ Y E KW FE D R F
Sbjct: 504 KSPLKYSREVCRKKW--MQFERNPDALNWRRGFN 535
>gi|146080339|ref|XP_001463994.1| hypothetical protein [Leishmania infantum JPCM5]
Length = 545
Score = 49.7 bits (117), Expect = 0.002, Method: Composition-based stats.
Identities = 30/154 (19%), Positives = 46/154 (29%), Gaps = 23/154 (14%)
Query: 153 PPHRFKVEDTPLLSEEDV--EYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTN--- 207
D P S E + + L++ ++ + P T Y N
Sbjct: 387 TSLLAHESDAPAESAEQLHRAAVLDATTRHRFKLIRPRQIMGPQATQAV-EYDAYGNVVP 445
Query: 208 ------------REITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSK 255
+ +TA L S+D W+ V +A+H+ E R+S
Sbjct: 446 PFLTEAAKWRRFKAVTAKLRTLPPRAAE-SYDVWVRVGLALHN-FSNEDHVFEEWVRFSL 503
Query: 256 QGS-TYDEENFNYKWDTFDFEEIGDTAKKRSTFT 288
+ Y E KW FE D R F
Sbjct: 504 KSPLKYSREVCRKKW--MQFERNPDALNWRRGFN 535
>gi|323344387|ref|ZP_08084612.1| virulence-associated protein E [Prevotella oralis ATCC 33269]
gi|323094514|gb|EFZ37090.1| virulence-associated protein E [Prevotella oralis ATCC 33269]
Length = 404
Score = 49.7 bits (117), Expect = 0.002, Method: Composition-based stats.
Identities = 38/257 (14%), Positives = 88/257 (34%), Gaps = 27/257 (10%)
Query: 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMG 558
+ + + G G K+T ++L+ ++ P+ + +
Sbjct: 146 RNHTCLVLTGEQGKFKTTFLDLLC-------PEELKSYLFTGKIDPQGKDVQTLIAEYLF 198
Query: 559 SRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRN 618
I I + ++ + ++K + + R Y E P + N + F+ +
Sbjct: 199 --INIDDQLKALNKRDENELKNLITTPRVKYRRPYDTYIEEYPHLASFMASVNGNDFLTD 256
Query: 619 PDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEV 678
P + RR+ +PF+ + D + + Y+ + W + + ++
Sbjct: 257 PTGS--RRF--LPFEVEHIDIDTAKEININKVYSEAVELWRVD-YHYWFNE--------- 302
Query: 679 CLKAKEEERQGTDTYQ-AWID-DCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTR 736
+ E Q ++ +Q ++ + G + + SE Y +S R
Sbjct: 303 --EEIAELHQESEGFQVQTVEYEMLLKGMEKPAATEESYMTTSEILNYLRGYTTLNLSER 360
Query: 737 TVTLNLKQKGFIGGIKR 753
+ LK+ GF+ KR
Sbjct: 361 RMGEALKKAGFLRKSKR 377
>gi|159037549|ref|YP_001536802.1| bifunctional DNA primase/polymerase [Salinispora arenicola CNS-205]
gi|157916384|gb|ABV97811.1| Bifunctional DNA primase/polymerase [Salinispora arenicola CNS-205]
Length = 377
Score = 49.7 bits (117), Expect = 0.002, Method: Composition-based stats.
Identities = 33/182 (18%), Positives = 48/182 (26%), Gaps = 37/182 (20%)
Query: 14 IHNGFKLIPLRLGDKRPQ---------------------RLGKWEEQLLSSEKIDK-LPA 51
G+++ PLR DKRP LG ++I + A
Sbjct: 89 AARGWRVFPLRPDDKRPAFPDHPADDCTGRDPRCRNAGCHLGWEPRATTDPDRIRRAWTA 148
Query: 52 CGFGFVCGVGEQPLYAFDIDSKD------EKTANTFKDTFEILH----GTPIVRIGQKPK 101
+G G L D+D +T T V G+
Sbjct: 149 RPYGIGLACGPSHLVVVDLDVPKDDSGGGPSGTDTLAALASQHGASIDATYTVTTGRGGT 208
Query: 102 ILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVED 161
L +R G + T + +D G Y VA + YT
Sbjct: 209 HLY-YRHPDGGPDLRNTAGTLGPMVDTRAHGGYVVAAG-STAAGRPYT---VSLDTDPAP 263
Query: 162 TP 163
P
Sbjct: 264 LP 265
>gi|84623236|ref|YP_450608.1| hypothetical protein XOO_1579 [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|84367176|dbj|BAE68334.1| phage-related protein [Xanthomonas oryzae pv. oryzae MAFF 311018]
Length = 898
Score = 49.7 bits (117), Expect = 0.002, Method: Composition-based stats.
Identities = 47/275 (17%), Positives = 90/275 (32%), Gaps = 31/275 (11%)
Query: 439 ETGQKVKPTKELYI------TKSTG------TPFVEGEPSQEFLDLVSGYFESEEVMDYF 486
G+ V +E Y K+T ++L + F + ++
Sbjct: 482 RDGELVTANEEDYFEFDKLRLKTTQKSIRLEIQRDAEAFRVDWLPWLWQCFGTHGMVA-M 540
Query: 487 TRCVGMALLGGNK--AQRFIHI--RGVGGSGKSTLMNLIKYAFG-NQYVINAEASDIMQN 541
T G + + F + G G+GK+TL+ + G + Y A
Sbjct: 541 TFWFGSLFAEQIRAGHKSFPFLEATGEAGAGKTTLLTFLWKLLGRSDYEGFDPAKSSKAG 600
Query: 542 RPPEAGKANPSLIRLMGSRIVIISETNE--NDEINAAKIKQMTGGDCMTAR--LNYGNTY 597
R G+ + + L+ + SE ++ + ++K GG + R N GN
Sbjct: 601 RARAMGQVSGMPVVLLEAD---RSEPDKAHSKTFEWDELKDFFGGGTLATRGVRNGGNET 657
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP-IANRDASFAQKLETKYTLEAK 656
E P T I N + +A R + + F +P + A L E
Sbjct: 658 YEPPFRGTIVITQN---AAVDASEAILTRIVKLHFKRPQVTTESRIAADNLNALQVEEVS 714
Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTD 691
+ ++ ++ + + E + + R D
Sbjct: 715 HFLVRAIR--QERAILDLFVERVKVFEAKLRAQQD 747
>gi|184154704|ref|YP_001843044.1| hypothetical protein LAF_0228 [Lactobacillus fermentum IFO 3956]
gi|183226048|dbj|BAG26564.1| hypothetical phage protein [Lactobacillus fermentum IFO 3956]
Length = 274
Score = 49.7 bits (117), Expect = 0.002, Method: Composition-based stats.
Identities = 47/288 (16%), Positives = 95/288 (32%), Gaps = 39/288 (13%)
Query: 4 MQWKEQAKQAIHNGFKLIPLRLGDKRPQR-LGKWEEQLLSSEKIDKLPACGFGFVCGVGE 62
M K +A Q G + PL G K P + + E ++ I + + +G +
Sbjct: 1 MGAKRRALQLAQAGVPVYPLAPGSKTPPKGHHGYREATTDTDTILRW-SDDWGLGIDLFT 59
Query: 63 QPLYAFDID----SKDEKTANTFKDTFEILHGTP---------IVRIGQKPKILIP--FR 107
+ D+D + D K + KD + L + Q P + F+
Sbjct: 60 AGIVVLDLDRPGTTTDGKAVHGGKDGVKALKIYLEQHQRQLPHPMYAEQTPHGGLHLFFK 119
Query: 108 MNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSE 167
+++ + + T + G +DILG FV + Y + + P +S
Sbjct: 120 LDQPLERPTRKTNALPG-VDILGD---FVIASPSEVDGSPY------LVMQDQTQP-VSI 168
Query: 168 EDVEYLFKFFQEITVPLVKDKKSIIPSKTWT-NNNNRQYTNREITAFLSCFGEEFYNGSH 226
D ++ + L + + P+KT + + YT R + G
Sbjct: 169 HDTATAPQWIVGL---LTAPQTAFNPAKTNSLMKGQKTYTGR----LFDKIAQGADEGER 221
Query: 227 DEWIP-VVMAVHHETRGSSKGKEI--ARRWSKQGSTYDEENFNYKWDT 271
+ W+ V ++ + + + D+ N + +
Sbjct: 222 NNWLASVTGSILNAGTDPANAYYLIGWINERFISPPLDDREVNAVFKS 269
>gi|58581308|ref|YP_200324.1| hypothetical protein XOO1685 [Xanthomonas oryzae pv. oryzae
KACC10331]
gi|58425902|gb|AAW74939.1| phage-related protein [Xanthomonas oryzae pv. oryzae KACC10331]
Length = 898
Score = 49.7 bits (117), Expect = 0.002, Method: Composition-based stats.
Identities = 47/275 (17%), Positives = 90/275 (32%), Gaps = 31/275 (11%)
Query: 439 ETGQKVKPTKELYI------TKSTG------TPFVEGEPSQEFLDLVSGYFESEEVMDYF 486
G+ V +E Y K+T ++L + F + ++
Sbjct: 482 RDGELVTANEEDYFEFDKLRLKTTQKSIRLEIQRDAEAFRVDWLPWLWQCFGTHGMVA-M 540
Query: 487 TRCVGMALLGGNK--AQRFIHI--RGVGGSGKSTLMNLIKYAFG-NQYVINAEASDIMQN 541
T G + + F + G G+GK+TL+ + G + Y A
Sbjct: 541 TFWFGSLFAEQIRAGHKSFPFLEATGEAGAGKTTLLTFLWKLLGRSDYEGFDPAKSSKAG 600
Query: 542 RPPEAGKANPSLIRLMGSRIVIISETNE--NDEINAAKIKQMTGGDCMTAR--LNYGNTY 597
R G+ + + L+ + SE ++ + ++K GG + R N GN
Sbjct: 601 RARAMGQVSGMPVVLLEAD---RSEPDKAHSKTFEWDELKDFFGGGTLATRGVRNGGNET 657
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP-IANRDASFAQKLETKYTLEAK 656
E P T I N + +A R + + F +P + A L E
Sbjct: 658 YEPPFRGTIVITQN---AAVDASEAILTRIVKLHFKRPQVTTESRIAADNLNALQVEEVS 714
Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTD 691
+ ++ ++ + + E + + R D
Sbjct: 715 HFLVRAIR--QERAILDLFAERVKVFEAKLRAQQD 747
>gi|108800482|ref|YP_640679.1| hypothetical protein Mmcs_3516 [Mycobacterium sp. MCS]
gi|119869621|ref|YP_939573.1| hypothetical protein Mkms_3589 [Mycobacterium sp. KMS]
gi|108770901|gb|ABG09623.1| hypothetical protein Mmcs_3516 [Mycobacterium sp. MCS]
gi|119695710|gb|ABL92783.1| conserved hypothetical protein [Mycobacterium sp. KMS]
Length = 718
Score = 49.7 bits (117), Expect = 0.002, Method: Composition-based stats.
Identities = 40/236 (16%), Positives = 69/236 (29%), Gaps = 25/236 (10%)
Query: 13 AIHNGFK-LIPLRLGDK--RPQRLGKWEEQLLSSEKI----DKLPACGFGFVCGVGEQPL 65
G++ +IP+ DK P + ++ E + P G +
Sbjct: 38 YADLGWRGVIPVDPRDKGGIPAGFTGYGGIDVTPENMAWFAKSKPGHNIGL---RLPDGV 94
Query: 66 YAFDIDSKDEK-TANTFKDTFEILHGTPIV-RIGQKPKILIPFRMNKEGIKKKKTTESTQ 123
D+D+ K A+TF + P R + + R+ + K T
Sbjct: 95 IGIDVDAYGPKKGADTFAEAQGRWGALPPSYRSTSRDDGISGIRLYRVPAGTKLETIIEF 154
Query: 124 GHLDILG------CGQYFVAYN-IHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKF 176
LDI ++ + IH KT + Y W V DTP E+ + +
Sbjct: 155 KDLDIRDIEIVQRHHRHVQCWPSIHDKTGQRYRWV-SELDGSVMDTPPAPEDLPDLPAAW 213
Query: 177 FQEITVPLVKDKKS-----IIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHD 227
+ V + P T + R G+ + D
Sbjct: 214 VAALRVEESGSNGTPLNGAEAPVDVQTALTEGDASPRVAELLARAIGDCYGGSRFD 269
>gi|322489396|emb|CBZ24655.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 543
Score = 49.7 bits (117), Expect = 0.002, Method: Composition-based stats.
Identities = 30/154 (19%), Positives = 48/154 (31%), Gaps = 23/154 (14%)
Query: 153 PPHRFKVEDTPLLSEEDV--EYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTN--- 207
D P S E + + + + L++ ++ + P T Y N
Sbjct: 385 ASLLAHESDAPAESAEQLRRAAVLQATTKHRFKLIRPRQIMGPQATQAV-EYDAYGNVVP 443
Query: 208 ------------REITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSK 255
+ +TA L S+D W+ V +A+H+ E R+S
Sbjct: 444 PFLTEAAKWRRFKAVTAKLRTLPPRAAE-SYDVWVRVGLALHN-FSNEDHVFEEWVRFSL 501
Query: 256 QGS-TYDEENFNYKWDTFDFEEIGDTAKKRSTFT 288
+ Y E KW FE D R F
Sbjct: 502 KSPLKYSREVCRKKW--LQFERNPDALNWRRGFN 533
>gi|303245314|ref|ZP_07331598.1| hypothetical protein DesfrDRAFT_0073 [Desulfovibrio fructosovorans
JJ]
gi|302493163|gb|EFL53025.1| hypothetical protein DesfrDRAFT_0073 [Desulfovibrio fructosovorans
JJ]
Length = 235
Score = 49.7 bits (117), Expect = 0.002, Method: Composition-based stats.
Identities = 20/120 (16%), Positives = 45/120 (37%), Gaps = 11/120 (9%)
Query: 654 EAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHS 713
A W + V +G+ + PE ++ D ++ + CD E +
Sbjct: 123 GALVWKDEAVVD--VEGVVL-CPECAAGSEVAYANEPDIVARFLRERCDRDLEGHETASD 179
Query: 714 LAKSYSEYREQELNYDRKRIST-RTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLK 772
L ++ + ++ D K + R +L L++ +I + + KG++L+
Sbjct: 180 LYTAFLAFCVEQGIDDEKALLNIRVFSLRLQELPWI-------TKIQAFGAFHYKGVRLR 232
>gi|289628549|ref|ZP_06461503.1| DNA primase-like protein [Pseudomonas syringae pv. aesculi str.
NCPPB3681]
gi|330870316|gb|EGH05025.1| DNA primase-like protein [Pseudomonas syringae pv. aesculi str.
0893_23]
Length = 903
Score = 49.7 bits (117), Expect = 0.002, Method: Composition-based stats.
Identities = 42/206 (20%), Positives = 72/206 (34%), Gaps = 13/206 (6%)
Query: 467 QEFLDLVSGYFESEEVMDYFTRCVGMALLGGNK--AQRFIHI--RGVGGSGKSTLMNLIK 522
+L + F + ++ T G + + F + G SGK+TL+ +
Sbjct: 525 DNWLASLWLCFGEKGLVA-LTYWFGSLFAEQIRADYESFPFLEMSGEPDSGKTTLIKFLW 583
Query: 523 YAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMT 582
FG Y A + R G+ + + L+ + +E ++ E + K
Sbjct: 584 KLFGRIYEGFDPAKGSISGRSRAMGQVSNIPLVLLEADRNTDAENAKSFEWDE--FKDYY 641
Query: 583 GGDCMTAR--LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP-IANR 639
GG + R N N E P + I N V +A R + F KP I
Sbjct: 642 GGGLLRTRGVKNNSNDTYEPPFRASIVIAQNA--GVSGH-EAILSRITKLYFAKPIITEE 698
Query: 640 DASFAQKLETKYTLEAKKWFLKGVKA 665
+ A L + + +K +KA
Sbjct: 699 SRAAADALVQTEVGDVSHFMVKAMKA 724
>gi|123231941|ref|XP_001286346.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121851703|gb|EAX73416.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 263
Score = 49.7 bits (117), Expect = 0.002, Method: Composition-based stats.
Identities = 39/252 (15%), Positives = 73/252 (28%), Gaps = 28/252 (11%)
Query: 499 KAQRFIHIRGVGGSGKSTLM-NLIKYAF-GNQYVINAEASDIMQNRPPEAGKANPSLIRL 556
K + + I G G+GK+T +++ G +I
Sbjct: 18 KNETALIIIGKQGTGKNTFFTDILCKLLEGYSNPNMTNLENICGKFNSSIEN-------- 69
Query: 557 MGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKH 613
++++ +E D +N+ +K + Y + + + N
Sbjct: 70 --MKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNSV 127
Query: 614 LFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDV 673
D RRY+V+ +D + L T + +
Sbjct: 128 PMKLESSD---RRYVVVR-TSEAHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNP 183
Query: 674 D-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKR 732
IP + E + Y+ +ID+ + SL SY + Y
Sbjct: 184 RQIPHTEERQTLLEANKS-VYELFIDETNFECLDER----SLYDSYKQ---YCQEYGYMA 235
Query: 733 ISTRTVTLNLKQ 744
S RT N+K
Sbjct: 236 ASKRTFLANVKN 247
>gi|313158708|gb|EFR58096.1| conserved hypothetical protein [Alistipes sp. HGB5]
Length = 403
Score = 49.7 bits (117), Expect = 0.002, Method: Composition-based stats.
Identities = 31/192 (16%), Positives = 61/192 (31%), Gaps = 25/192 (13%)
Query: 467 QEFLDLVSGYFESE-EV-MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524
LV F + E+ MDY L K + + +GKST +N +K
Sbjct: 96 PCIRSLVRHIFGEQYELGMDYLQLLY---LQPVQKLPILLLVSEERNTGKSTFLNFLKAV 152
Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGG 584
F + + + N G ++++ E N ++ ++K ++
Sbjct: 153 F--------QNNVTFNTNEDFRSQFNSDWA---GKLLIVVDEVLLNRREDSERLKNLSTT 201
Query: 585 DCMTARLNYGNTYSESPASFTPFIVPNK--HLFVRNPDD-AWWRRYIVIPFDKPIANRDA 641
+ E + N + + + +W R I + + D
Sbjct: 202 LSYKVEAKGKDR-DEIAFFAKFVLCSNNEYLPVIIDAGETRYWVRKI-----DRLQSDDT 255
Query: 642 SFAQKLETKYTL 653
F QKL+ +
Sbjct: 256 DFLQKLKAEIPA 267
>gi|256838365|ref|ZP_05543875.1| conserved hypothetical protein [Parabacteroides sp. D13]
gi|256739284|gb|EEU52608.1| conserved hypothetical protein [Parabacteroides sp. D13]
Length = 410
Score = 49.7 bits (117), Expect = 0.002, Method: Composition-based stats.
Identities = 31/192 (16%), Positives = 61/192 (31%), Gaps = 25/192 (13%)
Query: 467 QEFLDLVSGYFESE-EV-MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524
LV F + E+ MDY L K + + +GKST +N +K
Sbjct: 103 PCIRSLVRHIFGEQYELGMDYLQLLY---LQPVQKLPILLLVSEERNTGKSTFLNFLKAV 159
Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGG 584
F + + + N G ++++ E N ++ ++K ++
Sbjct: 160 F--------QNNVTFNTNEDFRSQFNSDWA---GKLLIVVDEVLLNRREDSERLKNLSTT 208
Query: 585 DCMTARLNYGNTYSESPASFTPFIVPNK--HLFVRNPDD-AWWRRYIVIPFDKPIANRDA 641
+ E + N + + + +W R I + + D
Sbjct: 209 LSYKVEAKGKDR-DEIAFFAKFVLCSNNEYLPVIIDAGETRYWVRKI-----DRLQSDDT 262
Query: 642 SFAQKLETKYTL 653
F QKL+ +
Sbjct: 263 DFLQKLKAEIPA 274
>gi|198275330|ref|ZP_03207861.1| hypothetical protein BACPLE_01491 [Bacteroides plebeius DSM 17135]
gi|212691219|ref|ZP_03299347.1| hypothetical protein BACDOR_00710 [Bacteroides dorei DSM 17855]
gi|298383992|ref|ZP_06993553.1| conserved hypothetical protein [Bacteroides sp. 1_1_14]
gi|198271913|gb|EDY96183.1| hypothetical protein BACPLE_01491 [Bacteroides plebeius DSM 17135]
gi|212666451|gb|EEB27023.1| hypothetical protein BACDOR_00710 [Bacteroides dorei DSM 17855]
gi|298263596|gb|EFI06459.1| conserved hypothetical protein [Bacteroides sp. 1_1_14]
Length = 415
Score = 49.7 bits (117), Expect = 0.002, Method: Composition-based stats.
Identities = 31/192 (16%), Positives = 61/192 (31%), Gaps = 25/192 (13%)
Query: 467 QEFLDLVSGYFESE-EV-MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524
LV F + E+ MDY L K + + +GKST +N +K
Sbjct: 108 PCIRSLVRHIFGEQYELGMDYLQLLY---LQPVQKLPILLLVSEERNTGKSTFLNFLKAV 164
Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGG 584
F + + + N G ++++ E N ++ ++K ++
Sbjct: 165 F--------QNNVTFNTNEDFRSQFNSDWA---GKLLIVVDEVLLNRREDSERLKNLSTT 213
Query: 585 DCMTARLNYGNTYSESPASFTPFIVPNK--HLFVRNPDD-AWWRRYIVIPFDKPIANRDA 641
+ E + N + + + +W R I + + D
Sbjct: 214 LSYKVEAKGKDR-DEIAFFAKFVLCSNNEYLPVIIDAGETRYWVRKI-----DRLQSDDT 267
Query: 642 SFAQKLETKYTL 653
F QKL+ +
Sbjct: 268 DFLQKLKAEIPA 279
>gi|167753785|ref|ZP_02425912.1| hypothetical protein ALIPUT_02069 [Alistipes putredinis DSM 17216]
gi|255007929|ref|ZP_05280055.1| hypothetical protein Bfra3_02243 [Bacteroides fragilis 3_1_12]
gi|301311553|ref|ZP_07217480.1| conserved hypothetical protein [Bacteroides sp. 20_3]
gi|313145641|ref|ZP_07807834.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
gi|167658410|gb|EDS02540.1| hypothetical protein ALIPUT_02069 [Alistipes putredinis DSM 17216]
gi|300830639|gb|EFK61282.1| conserved hypothetical protein [Bacteroides sp. 20_3]
gi|313134408|gb|EFR51768.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
Length = 401
Score = 49.7 bits (117), Expect = 0.002, Method: Composition-based stats.
Identities = 31/192 (16%), Positives = 61/192 (31%), Gaps = 25/192 (13%)
Query: 467 QEFLDLVSGYFESE-EV-MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524
LV F + E+ MDY L K + + +GKST +N +K
Sbjct: 94 PCIRSLVRHIFGEQYELGMDYLQLLY---LQPVQKLPILLLVSEERNTGKSTFLNFLKAV 150
Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGG 584
F + + + N G ++++ E N ++ ++K ++
Sbjct: 151 F--------QNNVTFNTNEDFRSQFNSDWA---GKLLIVVDEVLLNRREDSERLKNLSTT 199
Query: 585 DCMTARLNYGNTYSESPASFTPFIVPNK--HLFVRNPDD-AWWRRYIVIPFDKPIANRDA 641
+ E + N + + + +W R I + + D
Sbjct: 200 LSYKVEAKGKDR-DEIAFFAKFVLCSNNEYLPVIIDAGETRYWVRKI-----DRLQSDDT 253
Query: 642 SFAQKLETKYTL 653
F QKL+ +
Sbjct: 254 DFLQKLKAEIPA 265
>gi|313892469|ref|ZP_07826059.1| primase C-terminal domain protein [Dialister microaerophilus UPII
345-E]
gi|313119151|gb|EFR42353.1| primase C-terminal domain protein [Dialister microaerophilus UPII
345-E]
Length = 694
Score = 49.7 bits (117), Expect = 0.002, Method: Composition-based stats.
Identities = 14/70 (20%), Positives = 28/70 (40%), Gaps = 7/70 (10%)
Query: 209 EITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRW-SKQGSTYDEENFNY 267
++ L + EW+ V MA++HE E+ W S+ + +++
Sbjct: 5 DLRPLLQYINPSIL--DYQEWLSVGMALNHE----GYPYEVWETWSSRDSARFNDGECEK 58
Query: 268 KWDTFDFEEI 277
K++TF
Sbjct: 59 KYNTFRNNTN 68
>gi|150010082|ref|YP_001304825.1| hypothetical protein BDI_3502 [Parabacteroides distasonis ATCC
8503]
gi|149938506|gb|ABR45203.1| conserved hypothetical protein [Parabacteroides distasonis ATCC
8503]
Length = 401
Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 32/205 (15%), Positives = 64/205 (31%), Gaps = 31/205 (15%)
Query: 460 FVEGEPSQE------FLDLVSGYFESE-EV-MDYFTRCVGMALLGGNKAQRFIHIRGVGG 511
+ E + LV F + E+ MDY L K + +
Sbjct: 81 YEPIEHCPQQGEFPCIQSLVRHIFGEQYELGMDYLQLLY---LQPVQKLPILLLVSEERN 137
Query: 512 SGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEND 571
+GKST +N +K F + + + N G ++++ E N
Sbjct: 138 TGKSTFLNFLKALF--------QNNVTFNTNEDFRSQFNSDWA---GKLLIVVDEVLLNR 186
Query: 572 EINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK--HLFVRNPDD-AWWRRYI 628
++ ++K ++ + E + N + + + +W R I
Sbjct: 187 REDSERLKNLSTTLSYKVEAKGKDR-DEIAFFAKFVLCSNNEYLPVIIDAGETRYWVRKI 245
Query: 629 VIPFDKPIANRDASFAQKLETKYTL 653
+ + D F QKL+ +
Sbjct: 246 -----DRLQSDDTDFLQKLKAEIPA 265
>gi|314935055|ref|ZP_07842414.1| putative bacteriophage resistance protein [Staphylococcus caprae
C87]
gi|313652985|gb|EFS16748.1| putative bacteriophage resistance protein [Staphylococcus caprae
C87]
Length = 537
Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 41/258 (15%), Positives = 89/258 (34%), Gaps = 31/258 (12%)
Query: 414 IFSITSDLLDSS------SRFLGEQDGILDLETGQKVKPTK---ELYITKS-TGTPFVEG 463
+ + + LD++ + D I + + + V + YI K +
Sbjct: 168 MLEVYRNHLDTNYQYNIYPYAIAGNDWIYNCKELEFVDKKITSNDYYIIKYDVDKKNINT 227
Query: 464 EPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNK---AQRFIHIRGVGGSGKSTLMNL 520
+Q+F DLVS ++E + + K A+++ I+ G SGK M
Sbjct: 228 NLAQQFFDLVS---DNERSKNNLMLVHAYTMYRKMKLIQAEKWFLIKDFGRSGKGLFMET 284
Query: 521 IKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQ 580
+ V ++ +A + G+ I +ET E ++ +++
Sbjct: 285 FEKLL---NVNKVNFDSLLS----FGFEAANEWLNFYGADIAHANETGEINKGMMRILRK 337
Query: 581 MTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD 640
+ G+ ++ R+ N + + N+ + + + R IA +D
Sbjct: 338 IATGENISGRVIQRNNVKFK-NNAVLILDTNESV---DTGEITANRTR----TVKIAFKD 389
Query: 641 ASFAQKLETKYTLEAKKW 658
+ E +Y + W
Sbjct: 390 RPENETDEERYKVFKPFW 407
>gi|15320740|ref|NP_203252.1| helicase [Epiphyas postvittana NPV]
gi|15213208|gb|AAK85647.1| helicase [Epiphyas postvittana NPV]
Length = 1219
Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 32/154 (20%), Positives = 60/154 (38%), Gaps = 13/154 (8%)
Query: 485 YFTRCVGMALLGGNKA-QRFIHIRGVGGSGKSTLMNLI-KYAFGNQYVINAEASDIMQNR 542
+ +L+ ++ +++ G SGKST L+ + +++ + +
Sbjct: 891 FMLMHFAASLVAPTDYGRKAVYLPGEPMSGKSTFFELLDQLVLMHKFDDETHTGEAKETS 950
Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602
E K N L + + + SE+ + NA IK T L Y A
Sbjct: 951 DKEVSKLNSQLYTI--NELKKCSES--FFKKNADSIKSNTSSRKYQGLLRYE-------A 999
Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI 636
++ IV NK L+V + DD R++++ D
Sbjct: 1000 NYKMLIVNNKPLYVDDYDDGVQERFLIVNTDHKF 1033
>gi|322382459|ref|ZP_08056354.1| hypothetical protein PL1_2398 [Paenibacillus larvae subsp. larvae
B-3650]
gi|321153572|gb|EFX45961.1| hypothetical protein PL1_2398 [Paenibacillus larvae subsp. larvae
B-3650]
Length = 775
Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 38/202 (18%), Positives = 64/202 (31%), Gaps = 27/202 (13%)
Query: 503 FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIV 562
+ + G G+GKST +I+ + + + D + L G
Sbjct: 520 MLVLVGAQGAGKST---IIQKLAMRWFSDSLKTFDTKEAGEHLQSAWIFEFGELAGMTKA 576
Query: 563 IISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDA 622
+ E IKQ R+ Y ++ P F N F+++P
Sbjct: 577 EVDE-----------IKQFITKRSDKYRVAYDRVITDFPRKCVFFGSTNNWDFLKDPTGN 625
Query: 623 WWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKA 682
RR+ P R + + L + W + ++AY PEV +A
Sbjct: 626 --RRFW--PVSVKPERRTKNVFEDLTEHEIGQI--WA-EALQAYRRGERITLSPEVEKEA 678
Query: 683 --KEEERQGTDT----YQAWID 698
+E D Q W+D
Sbjct: 679 PGIQESHMEEDPRFGIIQEWLD 700
>gi|312868644|ref|ZP_07728838.1| primase C-terminal domain protein [Lactobacillus oris PB013-T2-3]
gi|311095853|gb|EFQ54103.1| primase C-terminal domain protein [Lactobacillus oris PB013-T2-3]
Length = 750
Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 30/141 (21%), Positives = 47/141 (33%), Gaps = 20/141 (14%)
Query: 208 REITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEI--ARRWSKQ-GSTYDEEN 264
++ L + S+ EW V MA+ H +G + +WS++ G Y
Sbjct: 5 FDLRPLLDYIDPA--SCSYAEWAQVGMALKH------EGYSVSDWDQWSQRDGDRYHAGE 56
Query: 265 FNYKWDTFDFEEI----GDTAKKRSTFTS-LFYHHGKLIPKGLLASRFS--DAYNKAMFS 317
KW TF G T + + H I A D + + +
Sbjct: 57 CERKWRTFKEAAGSVVTGATITQMAKNAGWQPASHDDEILDWDSALEVDDLDRGYRLIDT 116
Query: 318 IYKKGHFLYTADTKAWYKKDK 338
Y KG L + K W D+
Sbjct: 117 DYIKGTKL--QEPKNWNPVDQ 135
>gi|215401317|ref|YP_002332621.1| helicase [Helicoverpa armigera multiple nucleopolyhedrovirus]
gi|198448817|gb|ACH88607.1| helicase [Helicoverpa armigera multiple nucleopolyhedrovirus]
Length = 1209
Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 33/188 (17%), Positives = 64/188 (34%), Gaps = 25/188 (13%)
Query: 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMG 558
+ +++ G GSGKS+ + + + A + + +A+ + +L
Sbjct: 908 YEKCCLYLNGKPGSGKSSFFAVFDHFV--VVHKHDSAKYTLTKKDTNEMEADKMISQLY- 964
Query: 559 SRIVIISETNENDEINAAKIKQMT-GGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVR 617
+I+E + + K T Y + +F IV NK L +
Sbjct: 965 ----VINEMK---VCDDSFFKSTADSTKSNTVCRKYEGSQKYE-GNFKLMIVNNKPLHIS 1016
Query: 618 NPDDAWWRRYIVI----------PFDKPI--ANRDASFA-QKLETKYTLEAKKWFLKGVK 664
+ D R+ VI PF+ I ++ +F +K + + FL +
Sbjct: 1017 DYDKGVRNRFAVIYTDHLFEENMPFNGSIYWHIKNKTFPMEKSYIDELAKPVRLFLSHIL 1076
Query: 665 AYISKGLD 672
Y D
Sbjct: 1077 MYKRNARD 1084
>gi|22549494|ref|NP_689267.1| putative helicase [Mamestra configurata NPV-B]
gi|22476673|gb|AAM95079.1| putative helicase [Mamestra configurata NPV-B]
Length = 1209
Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 33/188 (17%), Positives = 64/188 (34%), Gaps = 25/188 (13%)
Query: 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMG 558
+ +++ G GSGKS+ + + + A + + +A+ + +L
Sbjct: 908 YEKCCLYLNGKPGSGKSSFFAVFDHFV--VVHKHDSAKYTLTKKDTNEMEADKMISQLY- 964
Query: 559 SRIVIISETNENDEINAAKIKQMT-GGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVR 617
+I+E + + K T Y + +F IV NK L +
Sbjct: 965 ----VINEMK---VCDDSFFKSTADSTKSNTVCRKYEGSQKYE-GNFKLMIVNNKPLHIS 1016
Query: 618 NPDDAWWRRYIVI----------PFDKPI--ANRDASFA-QKLETKYTLEAKKWFLKGVK 664
+ D R+ VI PF+ I ++ +F +K + + FL +
Sbjct: 1017 DYDKGVRNRFAVIYTDHLFEENMPFNGSIYWHIKNKTFPMEKSYIDELAKPVRLFLSHIL 1076
Query: 665 AYISKGLD 672
Y D
Sbjct: 1077 MYKRNARD 1084
>gi|116326160|ref|YP_803486.1| helicase [Anticarsia gemmatalis nucleopolyhedrovirus]
gi|112180898|gb|ABI13875.1| helicase [Anticarsia gemmatalis nucleopolyhedrovirus]
Length = 1221
Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 28/149 (18%), Positives = 57/149 (38%), Gaps = 16/149 (10%)
Query: 485 YFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKY-AFGNQYVINAEASDIMQNRP 543
G ++ N ++ +++ G SGKST L++ +++ D +
Sbjct: 893 MLMHFAGGLVVPTNYGRKAVYLPGEPMSGKSTFFELLESLVLMHKFDDETHTGDSKETSD 952
Query: 544 PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY--SESP 601
E K N L I+E + + + K+ D + + +
Sbjct: 953 KEVSKLNSQLY--------TINELKK---CSESFFKK--NADSINSDSKSRKYQGLLKYE 999
Query: 602 ASFTPFIVPNKHLFVRNPDDAWWRRYIVI 630
A++ IV N L+V + DDA R++++
Sbjct: 1000 ANYKMLIVNNNPLYVDDYDDAVQDRFLIV 1028
>gi|45120533|gb|AAS55052.1| helicase [Anticarsia gemmatalis MNPV]
Length = 1221
Score = 49.3 bits (116), Expect = 0.002, Method: Composition-based stats.
Identities = 28/149 (18%), Positives = 57/149 (38%), Gaps = 16/149 (10%)
Query: 485 YFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKY-AFGNQYVINAEASDIMQNRP 543
G ++ N ++ +++ G SGKST L++ +++ D +
Sbjct: 893 MLMHFAGGLVVPTNYGRKAVYLPGEPMSGKSTFFELLESLVLMHKFDDETHTGDSKETSD 952
Query: 544 PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY--SESP 601
E K N L I+E + + + K+ D + + +
Sbjct: 953 KEVSKLNSQLY--------TINELKK---CSESFFKK--NADSINSDSKSRKYQGLLKYE 999
Query: 602 ASFTPFIVPNKHLFVRNPDDAWWRRYIVI 630
A++ IV N L+V + DDA R++++
Sbjct: 1000 ANYKMLIVNNNPLYVDDYDDAVQDRFLIV 1028
>gi|168050549|ref|XP_001777721.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162670941|gb|EDQ57501.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 850
Score = 49.3 bits (116), Expect = 0.003, Method: Composition-based stats.
Identities = 35/208 (16%), Positives = 75/208 (36%), Gaps = 26/208 (12%)
Query: 473 VSGYFESEEVMDYFTRCV-------GMALLG-----GNKAQRFIHIRGVGGSGKSTLMNL 520
++ ++ ++ + G A+ G ++ + + G G GK+T L
Sbjct: 298 INDIIGNQSIVKQVQDWLVQWEKHHGNAVKGKKGSSSTSQKKAVLLSGPPGIGKTTTARL 357
Query: 521 IKYAFGNQYVINAEASDIMQN-----RPPEAGKANPSLIRLMGSR-IVIISETNENDEIN 574
+ G + + ASD + GK + ++ ++ +R + S++ +
Sbjct: 358 VCDLLGYE-ALEVNASDTRGKSDSNVKNGIGGKTSNTIKEMISNRSLGFGSKSERKAVLI 416
Query: 575 AAKIKQMTGGDCMTARLNYGNTYSESPASFTPFI-VPNKHLFVRNPDDAWWRRYIVIPFD 633
++ M+GGD R + +S P I + N + + +PF
Sbjct: 417 MDEVDGMSGGD----RGGVADLILSIKSSHIPIICICNDKYSQKLKS--LINYCLPLPFR 470
Query: 634 KPIANRDASFAQKLETKYTLEAKKWFLK 661
KP + A Q++ LE L+
Sbjct: 471 KPTKQQMAKRLQQIAKSEGLEVDDLALE 498
>gi|299141454|ref|ZP_07034591.1| conserved hypothetical protein [Prevotella oris C735]
gi|298577414|gb|EFI49283.1| conserved hypothetical protein [Prevotella oris C735]
Length = 415
Score = 49.3 bits (116), Expect = 0.003, Method: Composition-based stats.
Identities = 27/195 (13%), Positives = 59/195 (30%), Gaps = 31/195 (15%)
Query: 467 QEFLDLVSGYFESE-EV-MDYFTRCVGMALLGGNKAQRFIHIR---GVGGSGKSTLMNLI 521
L F + E+ MDY + ++ + +GKST +N +
Sbjct: 106 PHIEALARHIFGEQYELGMDYLQLLY------LHPIEKLPILLLVSEERNTGKSTFLNFL 159
Query: 522 KYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM 581
K FG N + N G ++++ E + ++ ++K +
Sbjct: 160 KALFGGNVTFNTNEDF--------RSQFNSDWA---GKLLILVDEVLLDRREDSERLKNL 208
Query: 582 TGGDCMTARLNYGNTYSESPASFTPFIVPNK--HLFVRNPDD-AWWRRYIVIPFDKPIAN 638
+ + E + N + + + +W R + I
Sbjct: 209 STTLSYKVEAKGKDR-DEISFFAKFVLCSNNERLPVIIDTGETRYWVRKV-----GRIEK 262
Query: 639 RDASFAQKLETKYTL 653
D F Q+++ +
Sbjct: 263 DDTDFLQRVKEEIPA 277
>gi|20069972|ref|NP_613176.1| helicase [Mamestra configurata NPV-A]
gi|20043366|gb|AAM09201.1| helicase [Mamestra configurata NPV-A]
gi|33331804|gb|AAQ11112.1| putative helicase [Mamestra configurata NPV-A]
Length = 1212
Score = 49.3 bits (116), Expect = 0.003, Method: Composition-based stats.
Identities = 33/188 (17%), Positives = 64/188 (34%), Gaps = 25/188 (13%)
Query: 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMG 558
+ +++ G GSGKS+ + + + A + + +A+ + +L
Sbjct: 911 YEKCCLYLNGKPGSGKSSFFAVFDHFV--VVHKHDSAKYTLTKKDTNEMEADKMISQLY- 967
Query: 559 SRIVIISETNENDEINAAKIKQMT-GGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVR 617
+I+E + + K T Y + +F IV NK L +
Sbjct: 968 ----VINEMK---VCDDSFFKSTADSTKSNTVCRKYEGSQKYE-GNFKLLIVNNKPLHIS 1019
Query: 618 NPDDAWWRRYIVI----------PFDKPI--ANRDASFA-QKLETKYTLEAKKWFLKGVK 664
+ D R+ VI PF+ I ++ +F +K + + FL +
Sbjct: 1020 DYDKGVRNRFAVIYTDHLFEENMPFNGSIYWHIKNKTFPMEKSYIDELAKPVRLFLSHIL 1079
Query: 665 AYISKGLD 672
Y D
Sbjct: 1080 MYKRNARD 1087
>gi|294664100|ref|ZP_06729496.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
gi|292606131|gb|EFF49386.1| conserved hypothetical protein [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
Length = 583
Score = 49.3 bits (116), Expect = 0.003, Method: Composition-based stats.
Identities = 57/390 (14%), Positives = 115/390 (29%), Gaps = 49/390 (12%)
Query: 323 HFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKS 382
+ ++WY + + T ++ K+ + L+ +
Sbjct: 71 FQRHEVTDESWYYFRVDFPHDSPSVKGTFTGGHVSSAAEFKKRLISLAAGAMFTGTGHQL 130
Query: 383 PRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQ 442
R + V+ + D + L G + + G+
Sbjct: 131 DRLIEEQTEAIKTVDAIDFVGYSK----------------DHRAYLL----GDIAVRDGE 170
Query: 443 KVKPTKELYI------TKSTG------TPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCV 490
V +E Y K+T ++L + F + ++ T
Sbjct: 171 LVTANEEDYFEFDKLRLKTTQKSIRLEIQRDVEAFRTDWLPWLWQCFGTHGMVA-MTFWF 229
Query: 491 GMALLGGNK--AQRFIHI--RGVGGSGKSTLMNLIKYAFG-NQYVINAEASDIMQNRPPE 545
G + + F + G G+GK+TL+ + G + Y A R
Sbjct: 230 GSLFAEQIRAAHKSFPFLEATGEAGAGKTTLLTFLWKLLGRSDYEGFDPAKSSKAGRARA 289
Query: 546 AGKANPSLIRLMGS-RIVIISETNENDEINAAKIKQMTGGDCMTAR--LNYGNTYSESPA 602
G+ + + L+ + R + E + +K GG + R N GN E P
Sbjct: 290 MGQVSGMPVVLLEADRSDVDKAHARTFEWDE--LKDFFGGGTLATRGVRNGGNETYEPPF 347
Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP-IANRDASFAQKLETKYTLEAKKWFLK 661
T I N + +A R + + F +P + A L E + ++
Sbjct: 348 RGTIVISQN---AAVDASEAILTRIVKLHFKRPQVTTESRIAADNLNALQVEEVSHFLVR 404
Query: 662 GVKAYISKGLDVDIPEVCLKAKEEERQGTD 691
++ + + E + + R D
Sbjct: 405 AIR--QERAILDLFAERVKLFEAKLRGQQD 432
>gi|317473777|ref|ZP_07933058.1| hypothetical protein HMPREF1016_00036 [Bacteroides eggerthii
1_2_48FAA]
gi|316910034|gb|EFV31707.1| hypothetical protein HMPREF1016_00036 [Bacteroides eggerthii
1_2_48FAA]
Length = 358
Score = 49.3 bits (116), Expect = 0.003, Method: Composition-based stats.
Identities = 30/194 (15%), Positives = 62/194 (31%), Gaps = 25/194 (12%)
Query: 465 PSQEFLDLVSGYFESE-EV-MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIK 522
LV F + E+ MDY L K + + +GKST +N +K
Sbjct: 104 DFPSIRSLVEHSFGEQYELGMDYLQLLY---LQPVQKLPILLLVSEERNTGKSTFLNFLK 160
Query: 523 YAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMT 582
F + + + N G ++++ E N ++ ++K ++
Sbjct: 161 ALF--------QNNVTFNTNEDFRSQFNSDWA---GKLLIVVDEVLLNRREDSERLKNLS 209
Query: 583 GGDCMTARLNYGNTYSESPASFTPFIVPNK--HLFVRNPDD-AWWRRYIVIPFDKPIANR 639
+ E + N + + + +W R I + +
Sbjct: 210 TTLSYKVEAKGKDR-DEIAFFAKFVLCSNNEYLPVIIDAGETRYWVRKI-----NRLQSD 263
Query: 640 DASFAQKLETKYTL 653
D +F Q+L+ +
Sbjct: 264 DTNFLQRLKAEIPA 277
>gi|302345842|ref|YP_003814195.1| virulence-associated protein E [Prevotella melaninogenica ATCC
25845]
gi|302149342|gb|ADK95604.1| virulence-associated protein E [Prevotella melaninogenica ATCC
25845]
Length = 404
Score = 49.3 bits (116), Expect = 0.003, Method: Composition-based stats.
Identities = 39/257 (15%), Positives = 89/257 (34%), Gaps = 27/257 (10%)
Query: 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMG 558
+ + + G G K+T ++L+ ++ P+ + +
Sbjct: 146 RNHTCLVLTGEQGKFKTTFLDLLC-------PEELKSYLFTGKIDPQGKDVQTLIAEYLF 198
Query: 559 SRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRN 618
I I + ++ + ++K + + R Y E P + N + F+ +
Sbjct: 199 --INIDDQLKALNKRDENELKNLITTPRVKYRRPYDTYIEEYPHLASFMASVNGNDFLTD 256
Query: 619 PDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEV 678
P + RR+ +PF+ + DA+ + Y+ + W + + ++
Sbjct: 257 PTGS--RRF--LPFEVEHIDIDAAKEVNINKVYSEAVELWRVD-YHYWFNE--------- 302
Query: 679 CLKAKEEERQGTDTYQ-AWID-DCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTR 736
+ E Q ++ +Q ++ + G + + SE Y +S R
Sbjct: 303 --EEIAELHQESEGFQVQTVEYEMLLKGMEKPAATEESYMTTSEILNYLRGYTTLNLSER 360
Query: 737 TVTLNLKQKGFIGGIKR 753
+ LK+ GF+ KR
Sbjct: 361 RMGEALKKAGFLRKSKR 377
>gi|188577650|ref|YP_001914579.1| hypothetical protein PXO_01334 [Xanthomonas oryzae pv. oryzae
PXO99A]
gi|188522102|gb|ACD60047.1| phage-related protein [Xanthomonas oryzae pv. oryzae PXO99A]
Length = 867
Score = 49.3 bits (116), Expect = 0.003, Method: Composition-based stats.
Identities = 65/468 (13%), Positives = 135/468 (28%), Gaps = 68/468 (14%)
Query: 248 EIARRWSKQGS--TYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLAS 305
+ +S + +D F + EE G+ ++ + I
Sbjct: 293 DFWLEFSSRLYWFDFDALRFEKFQREIEPEEDGELDPEKLAKIRRASCTVQKIANC---- 348
Query: 306 RFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKED 365
Y +A++ + ++WY + + T + K+
Sbjct: 349 -----YPEALY------FQRHEVTDESWYYFRVDFPHDSPSVKGTFTGGHVASASEFKKR 397
Query: 366 VFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSS 425
+ L+ + R + V+ + D
Sbjct: 398 LISLAAGAMFTGTGHQLDRLIEEQTEAIKTVDAIDFVGYSK----------------DHR 441
Query: 426 SRFLGEQDGILDLETGQKVKPTKELYI------TKSTG------TPFVEGEPSQEFLDLV 473
+ L G + + G+ V +E Y K+T ++L +
Sbjct: 442 AYLL----GDIAVREGELVTANEEDYFEFDKLRLKTTQKSIRLEIQRDAEAFRTDWLPWL 497
Query: 474 SGYFESEEVMDYFTRCVGMALLGGNK--AQRFIHI--RGVGGSGKSTLMNLIKYAFG-NQ 528
F + ++ T G + + F + G +GK+TL+ + G +
Sbjct: 498 WLCFGTHGMVA-MTFWFGSLFAEQIRAAHKSFPFLEATGEADAGKTTLLTFLWKLLGRSD 556
Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE--NDEINAAKIKQMTGGDC 586
Y A R G+ + + L+ + SE ++ ++K GG
Sbjct: 557 YEGFDPAKSSKAGRARAMGQVSGMPVVLLEAD---RSEPDKAHAKTFEWDELKDFFGGGT 613
Query: 587 MTAR--LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP-IANRDASF 643
+ R N GN E P T I N + +A R + + F +P +
Sbjct: 614 LATRGVRNGGNETYEPPFRGTIVISQN---AAVDASEAILTRIVKLHFKRPQVTTESRIA 670
Query: 644 AQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTD 691
A L E + ++ ++ + + E + + R D
Sbjct: 671 ADNLNALQVEEVSHFLVRAIR--QERAILDLFAERVKVFEAKLRAQQD 716
>gi|16579845|gb|AAL26660.1| unknown [Staphylococcus aureus]
Length = 172
Score = 49.3 bits (116), Expect = 0.003, Method: Composition-based stats.
Identities = 17/110 (15%), Positives = 36/110 (32%), Gaps = 3/110 (2%)
Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV-RNPDDAWWRRYIVIPFDKPI 636
+K++ + + G T E+ N L A RR VIP + +
Sbjct: 19 LKKLVSVEPVHVDRK-GKTQVETTLDLKLAFGTNARLNFPSAHAKALERRIAVIPCEYYV 77
Query: 637 ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEE 686
D +KL+ + E + + K + ++ + + +
Sbjct: 78 EKADPDLIEKLQDE-KKEIFLYLMYVYKQIVKNDIEYLQNDRVTEISHDW 126
>gi|281426211|ref|ZP_06257124.1| virulence-associated protein E [Prevotella oris F0302]
gi|281399787|gb|EFB30618.1| virulence-associated protein E [Prevotella oris F0302]
Length = 404
Score = 49.3 bits (116), Expect = 0.003, Method: Composition-based stats.
Identities = 39/257 (15%), Positives = 89/257 (34%), Gaps = 27/257 (10%)
Query: 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMG 558
+ + + G G K+T ++L+ ++ P+ + +
Sbjct: 146 RNHTCLVLTGEQGKFKTTFLDLLC-------PEELKSYLFTGKIDPQGKDVQTLIAEYLF 198
Query: 559 SRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRN 618
I I + ++ + ++K + + R Y E P + N + F+ +
Sbjct: 199 --INIDDQLKALNKRDENELKNLITTPRVKYRRPYDTYIEEYPHLASFMASVNGNDFLTD 256
Query: 619 PDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEV 678
P + RR+ +PF+ + DA+ + Y+ + W + + ++
Sbjct: 257 PTGS--RRF--LPFEVEHIDIDAAKEVNINKVYSEAVELWRVD-YHYWFNE--------- 302
Query: 679 CLKAKEEERQGTDTYQ-AWID-DCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTR 736
+ E Q ++ +Q ++ + G + + SE Y +S R
Sbjct: 303 --EEIAELHQESEGFQVQTVEYEMLLKGMEKPAVTEESYMTTSEILNYLRGYTTLNLSER 360
Query: 737 TVTLNLKQKGFIGGIKR 753
+ LK+ GF+ KR
Sbjct: 361 RMGEALKKAGFLRKSKR 377
>gi|153835208|ref|ZP_01987875.1| primase C 2 (PriCT-2) family [Vibrio harveyi HY01]
gi|148868318|gb|EDL67446.1| primase C 2 (PriCT-2) family [Vibrio harveyi HY01]
Length = 1209
Score = 49.0 bits (115), Expect = 0.003, Method: Composition-based stats.
Identities = 28/125 (22%), Positives = 49/125 (39%), Gaps = 17/125 (13%)
Query: 199 NNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGS 258
N Q E LS + + W + A+ E + ++I RWS G+
Sbjct: 2 MANYIQLELYEAEEALSHISPDL---PYKRWSKIGRALVSEY--GNDARDIFERWSATGN 56
Query: 259 TYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASR--FSDAYNKAMF 316
+YD+ F W F KR++F S Y + + G + +S+ + +F
Sbjct: 57 SYDKRGFKSWWKNF-------QRVKRTSFGSFIY---EAMEAGWKPKKKDYSEEERQKLF 106
Query: 317 SIYKK 321
+ Y+K
Sbjct: 107 ADYEK 111
>gi|299141856|ref|ZP_07034991.1| hypothetical protein HMPREF0665_01438 [Prevotella oris C735]
gi|298576707|gb|EFI48578.1| hypothetical protein HMPREF0665_01438 [Prevotella oris C735]
Length = 404
Score = 49.0 bits (115), Expect = 0.003, Method: Composition-based stats.
Identities = 39/257 (15%), Positives = 89/257 (34%), Gaps = 27/257 (10%)
Query: 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMG 558
+ + + G G K+T ++L+ ++ P+ + +
Sbjct: 146 RNHTCLVLTGEQGKFKTTFLDLLC-------PEELKSYLFTGKIDPQGKDVQTLIAEYLF 198
Query: 559 SRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRN 618
I I + ++ + ++K + + R Y E P + N + F+ +
Sbjct: 199 --INIDDQLKALNKRDENELKNLITTPRVKYRRPYDTYIEEYPHLASFMASVNGNDFLTD 256
Query: 619 PDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEV 678
P + RR+ +PF+ + DA+ + Y+ + W + + ++
Sbjct: 257 PTGS--RRF--LPFEVEHIDIDAAKEVNINKVYSEAVELWRVD-YHYWFNE--------- 302
Query: 679 CLKAKEEERQGTDTYQ-AWID-DCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTR 736
+ E Q ++ +Q ++ + G + + SE Y +S R
Sbjct: 303 --EEIAELHQESEGFQVQTVEYEMLLKGMEKPAVTEESYMTTSEILNYLRGYTTLNLSER 360
Query: 737 TVTLNLKQKGFIGGIKR 753
+ LK+ GF+ KR
Sbjct: 361 RMGEALKKAGFLRKSKR 377
>gi|302545972|ref|ZP_07298314.1| N- superfamily bifunctional DNA primase/polymerase [Streptomyces
hygroscopicus ATCC 53653]
gi|302463590|gb|EFL26683.1| N- superfamily bifunctional DNA primase/polymerase [Streptomyces
himastatinicus ATCC 53653]
Length = 301
Score = 49.0 bits (115), Expect = 0.003, Method: Composition-based stats.
Identities = 34/160 (21%), Positives = 50/160 (31%), Gaps = 26/160 (16%)
Query: 6 WKEQAKQAIHNGFKLIPLRLGDKRPQRLG---------------KWEEQLLSS-EKIDKL 49
++ A A G+ + PLR K P G KWEE+ E+I
Sbjct: 10 FRNSAFNAAGRGWHVFPLRPDSKTPALHGADRCPRKGDCASGHRKWEERATDKPEQIAAW 69
Query: 50 PA-CGFGFVCGVGEQPLYAFDIDS-KDEKTAN------TFKDTFEILHGTPIV--RIGQK 99
+ + G L D+D KD +A+ TFK E R+
Sbjct: 70 WSRHWYNVAVATGPSGLVVIDLDVPKDNSSADTPFGVETFKALCERAGQPVPATYRVRTA 129
Query: 100 PKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYN 139
+ G++ T +D G Y VA
Sbjct: 130 SSGWHLYFTAPPGVQLANTAGKLGPLIDTRAWGGYVVAAG 169
>gi|288904658|ref|YP_003429879.1| hypothetical protein GALLO_0442 [Streptococcus gallolyticus UCN34]
gi|288731383|emb|CBI12934.1| hypothetical protein, phage associated [Streptococcus gallolyticus
UCN34]
Length = 757
Score = 49.0 bits (115), Expect = 0.003, Method: Composition-based stats.
Identities = 18/93 (19%), Positives = 32/93 (34%), Gaps = 8/93 (8%)
Query: 207 NREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFN 266
+ ++ L + W + MA+ HE + WS+ + Y +
Sbjct: 5 DFDLLPLLDYINPAMV--DYSTWCQIGMALKHEGYTAMD----WDNWSQADTRYKKGECF 58
Query: 267 YKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIP 299
KW TF+ E + +T T L +G
Sbjct: 59 KKWTTFN--EEAGSVVTGATITQLAKDNGWQPA 89
>gi|288918371|ref|ZP_06412724.1| Bifunctional DNA primase/polymerase [Frankia sp. EUN1f]
gi|288350266|gb|EFC84490.1| Bifunctional DNA primase/polymerase [Frankia sp. EUN1f]
Length = 794
Score = 49.0 bits (115), Expect = 0.003, Method: Composition-based stats.
Identities = 36/282 (12%), Positives = 73/282 (25%), Gaps = 58/282 (20%)
Query: 26 GDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTF 85
K P+ ++E +I G G L D+D + A+ +
Sbjct: 54 PGKHPRTASGFKEATADRVQIRTWVRQWPGCNWGGVTAGLVVVDLD--GPRGADGWAALV 111
Query: 86 EILHGTPIV--RIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPK 143
+ P + R G+ + +R N G K + +DI G Y V
Sbjct: 112 DEHGEAPTLTHRTGRG--RHLIYRQN--GTKVSNSASKIADSIDIRADGGYVVLPGSLHP 167
Query: 144 TKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNR 203
+ + Y E + + + + V + + S
Sbjct: 168 SGRLYE-----------------TEQAGAVVEAPRWLVVSATAPRSTATSSTDGPRPG-- 208
Query: 204 QYTNREITAFLSCFGEEFYNGSHDEWI-PVVMAVHHETRGSSKGKEIARR---------- 252
GE G+HD+ + + ++ + +
Sbjct: 209 ------------RLGEAIPYGAHDDTLFKYACLLRSRNIDKAEAYALIEKRRLDCQNGGP 256
Query: 253 -----WSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTS 289
++ + + + WD + GD K
Sbjct: 257 SEVAGFTAEAAR---AKVDEVWDRYPAGRGGDGDKPSGGRGP 295
>gi|256006071|ref|ZP_05431004.1| Bifunctional DNA primase/polymerase [Clostridium thermocellum DSM
2360]
gi|255989961|gb|EEU00110.1| Bifunctional DNA primase/polymerase [Clostridium thermocellum DSM
2360]
Length = 207
Score = 49.0 bits (115), Expect = 0.003, Method: Composition-based stats.
Identities = 30/169 (17%), Positives = 48/169 (28%), Gaps = 27/169 (15%)
Query: 4 MQWKEQAKQAIHNGFKLIPLR-----------------LGDKRPQRLGKWEEQLLSSEKI 46
+ + A + +IPL K P G ++ E+I
Sbjct: 3 VTMMDAALKYAEANIPVIPLHWICEDGSCSCKEGSNCDSKGKHPLYTGWYKNSTAYVEQI 62
Query: 47 DKL----PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKI 102
K P G G L D+D ++T + + T L T G+
Sbjct: 63 RKWWTKTPNANIGIPTGEKSDWLV-LDVDDGGDETISALEATHGKLPDTVTAVTGR---G 118
Query: 103 LIPFRMNKEGIKKKKTTESTQGHLDILG-CGQYFVAYNIHPKTKKEYTW 150
+ + LD G VA +IH + +Y W
Sbjct: 119 GRHYVFKYPQGRSIPNKTKFAPDLDTRSTDGLIVVAPSIHV-SGNQYQW 166
>gi|302559042|ref|ZP_07311384.1| N- superfamily bifunctional DNA primase/polymerase [Streptomyces
griseoflavus Tu4000]
gi|302476660|gb|EFL39753.1| N- superfamily bifunctional DNA primase/polymerase [Streptomyces
griseoflavus Tu4000]
Length = 296
Score = 49.0 bits (115), Expect = 0.003, Method: Composition-based stats.
Identities = 42/233 (18%), Positives = 67/233 (28%), Gaps = 38/233 (16%)
Query: 17 GFKLIPLRLGDKRPQRLG---------------KWEEQLLSSEKIDK--LPACGFGFVCG 59
G+ ++PLR G KRP G KWE++ + + A F
Sbjct: 20 GWPVLPLRPGGKRPALHGENACPRTGPCAGGHLKWEQRATTDPDRIRAAWAAGPFNVGIA 79
Query: 60 VGEQPLYAFDID----SKD-EKTANTFKDTFEILHG-TPIVRIGQKPKILIPFRMNKE-G 112
G L D+D S D TF E P R + G
Sbjct: 80 TGPAGLLVIDLDKPKSSADTPCGVTTFTALCERTGQPVPTTRTVRTASGGRHLYFTAPAG 139
Query: 113 IKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEY 172
I+ T + +D G Y VA P V P + V
Sbjct: 140 IRLGNTAGALAPLVDTRAHGGYVVAPGSTTPAGTYEVIHDDP----VLPLPAWLLKAVAP 195
Query: 173 LFKFFQEITVP----------LVKDKKSIIPSKTWTNNNNRQYTNREITAFLS 215
++ P L ++ ++ ++ N + R + F++
Sbjct: 196 APAQPVSLSTPRCGNRLADTVLAREVAAVATAQEGGRNAQLLTSARAVGRFVA 248
>gi|228861672|ref|YP_002854692.1| helicase [Euproctis pseudoconspersa nucleopolyhedrovirus]
gi|226425120|gb|ACO53532.1| helicase [Euproctis pseudoconspersa nucleopolyhedrovirus]
Length = 1246
Score = 49.0 bits (115), Expect = 0.003, Method: Composition-based stats.
Identities = 33/148 (22%), Positives = 59/148 (39%), Gaps = 18/148 (12%)
Query: 495 LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD--IMQNRPPEAGKANPS 552
+ + + I+ G GSGKS N G+ V++ +D + + + +AN
Sbjct: 941 IPSDFEKCCIYCTGEPGSGKS--SN--GEMMGHLVVVHKRDADSYTLSKKETDEMEANKL 996
Query: 553 LIRLMGSRIVIISETNENDEINAAKIKQM--TGGDCMTARLNYGNTYSESPASFTPFIVP 610
+ +L +I+E E N A K + + R G+ E A+F I+
Sbjct: 997 ISQLY-----VINELEE---CNDAFFKTTADSSKSNVVCRKFQGSQTYE--ANFKLMIIN 1046
Query: 611 NKHLFVRNPDDAWWRRYIVIPFDKPIAN 638
NK L+++N D R+ V+
Sbjct: 1047 NKPLYIKNYDKGVRNRFAVLYMPHEFEE 1074
>gi|304382989|ref|ZP_07365470.1| conserved hypothetical protein [Prevotella marshii DSM 16973]
gi|304335908|gb|EFM02157.1| conserved hypothetical protein [Prevotella marshii DSM 16973]
Length = 426
Score = 49.0 bits (115), Expect = 0.003, Method: Composition-based stats.
Identities = 27/195 (13%), Positives = 59/195 (30%), Gaps = 31/195 (15%)
Query: 467 QEFLDLVSGYFESE-EV-MDYFTRCVGMALLGGNKAQRFIHIR---GVGGSGKSTLMNLI 521
L F + E+ MDY + ++ + +GKST +N +
Sbjct: 117 PHIKALARHIFGEQYELGMDYLQLLY------LHPIEKLPILLLVSEERNTGKSTFLNFL 170
Query: 522 KYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM 581
K FG N + N G ++++ E + ++ ++K +
Sbjct: 171 KALFGGNVTFNTNEDF--------RSQFNSDWA---GKLLILVDEVLLDRREDSERLKNL 219
Query: 582 TGGDCMTARLNYGNTYSESPASFTPFIVPNK--HLFVRNPDD-AWWRRYIVIPFDKPIAN 638
+ + E + N + + + +W R + I
Sbjct: 220 STTLSYKVEAKGKDR-DEISFFAKFVLCSNNERLPVIIDTGETRYWVRKV-----GRIEK 273
Query: 639 RDASFAQKLETKYTL 653
D F Q+++ +
Sbjct: 274 DDTDFLQRVKEEIPA 288
>gi|259507777|ref|ZP_05750677.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
gi|259164570|gb|EEW49124.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
Length = 289
Score = 49.0 bits (115), Expect = 0.003, Method: Composition-based stats.
Identities = 33/169 (19%), Positives = 55/169 (32%), Gaps = 33/169 (19%)
Query: 1 MPVMQW-KEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEK----IDKLPACGFG 55
+P QW A++ GFK+ PL K P +++ + +K P G
Sbjct: 41 LPTNQWLPTAARRYAQLGFKVGPL--NGKVPLTPNGFKDFTTDLAQVQAWWEKWPGANIG 98
Query: 56 FVCGVGEQPLYAFDIDSKD-------EKTANTFKDTFEILHGTPIVRIGQKPKILIPFRM 108
+ + DID ++ E DT +L G+ + +
Sbjct: 99 ---ATPPKGMVVLDIDPRNGGWDTWVELGGLEVPDTLMMLTGS----------HGLHYWF 145
Query: 109 NKEGIKKKKTTESTQGHLDILGC-GQYFVAYNIHPKTKKEY---TWTTP 153
+ T +D+ G V ++HP T Y W TP
Sbjct: 146 TLPYSGDVRGTAGE--GVDVKTHTGYVVVPPSVHPTTGMHYLIAHWCTP 192
>gi|25028716|ref|NP_738770.1| hypothetical protein CE2160 [Corynebacterium efficiens YS-314]
gi|23494002|dbj|BAC18970.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
Length = 293
Score = 49.0 bits (115), Expect = 0.003, Method: Composition-based stats.
Identities = 33/169 (19%), Positives = 55/169 (32%), Gaps = 33/169 (19%)
Query: 1 MPVMQW-KEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEK----IDKLPACGFG 55
+P QW A++ GFK+ PL K P +++ + +K P G
Sbjct: 45 LPTNQWLPTAARRYAQLGFKVGPL--NGKVPLTPNGFKDFTTDLAQVQAWWEKWPGANIG 102
Query: 56 FVCGVGEQPLYAFDIDSKD-------EKTANTFKDTFEILHGTPIVRIGQKPKILIPFRM 108
+ + DID ++ E DT +L G+ + +
Sbjct: 103 ---ATPPKGMVVLDIDPRNGGWDTWVELGGLEVPDTLMMLTGS----------HGLHYWF 149
Query: 109 NKEGIKKKKTTESTQGHLDILGC-GQYFVAYNIHPKTKKEY---TWTTP 153
+ T +D+ G V ++HP T Y W TP
Sbjct: 150 TLPYSGDVRGTAGE--GVDVKTHTGYVVVPPSVHPTTGMHYLIAHWCTP 196
>gi|88813297|ref|ZP_01128536.1| hypothetical protein NB231_07357 [Nitrococcus mobilis Nb-231]
gi|88789469|gb|EAR20597.1| hypothetical protein NB231_07357 [Nitrococcus mobilis Nb-231]
Length = 252
Score = 49.0 bits (115), Expect = 0.003, Method: Composition-based stats.
Identities = 12/100 (12%), Positives = 34/100 (34%), Gaps = 16/100 (16%)
Query: 679 CLKAKEEERQGT-------DTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRK 731
+A E+ R D +I+ C + +Y ++ ++ +
Sbjct: 152 VDEASEQTRLEATQLQAALDQVAQFIETQCRRSTTTRAPAEVFYDAYKDW--MRSEHNAR 209
Query: 732 RISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771
+ + L G+ +++ + +++ GL+L
Sbjct: 210 PLGHKDFFERLDYYGYPQ-------QRDARGVQLLIGLQL 242
>gi|325955368|ref|YP_004239028.1| ATPase AAA [Weeksella virosa DSM 16922]
gi|323437986|gb|ADX68450.1| AAA ATPase central domain protein [Weeksella virosa DSM 16922]
Length = 238
Score = 49.0 bits (115), Expect = 0.003, Method: Composition-based stats.
Identities = 36/199 (18%), Positives = 63/199 (31%), Gaps = 27/199 (13%)
Query: 473 VSGYFESEEVMDYFTRCV---GM----ALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF 525
+ F EE + R V LG + I + G G GK+ I A
Sbjct: 16 LDDVFIEEEYREKIQRFVKEHSYREKLIELGLEVDHK-IMLYGASGCGKTMTAKAIGNAL 74
Query: 526 GNQ-------YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKI 578
G + ++ A + QN KA L ++ ++ D+ + ++
Sbjct: 75 GKKVLILNLSNIVCARIGETSQNLKQIFDKAKREKAILFLDEFDLLGKSRTYDDQDVGEM 134
Query: 579 KQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIV-IPFDKPIA 637
K++ L + N + D A WRR+ + IP+ P
Sbjct: 135 KRLVNVIIQQIDLLSSDVI--------LICATNHAEMI---DTALWRRFQLRIPYQLPDR 183
Query: 638 NRDASFAQKLETKYTLEAK 656
+ Q L + +E
Sbjct: 184 EALDDYYQSLRKSFPVELP 202
>gi|323343443|ref|ZP_08083670.1| hypothetical protein HMPREF0663_10205 [Prevotella oralis ATCC
33269]
gi|323095262|gb|EFZ37836.1| hypothetical protein HMPREF0663_10205 [Prevotella oralis ATCC
33269]
Length = 396
Score = 49.0 bits (115), Expect = 0.003, Method: Composition-based stats.
Identities = 31/197 (15%), Positives = 63/197 (31%), Gaps = 25/197 (12%)
Query: 462 EGEPSQEFLDLVSGYFESE-EV-MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMN 519
+G L+ F + E+ MDY L K + + +GKST +N
Sbjct: 84 KGGEFPHVESLIKHIFGEQYELGMDYLQLLY---LQPVQKLPILLMVSEERNTGKSTFLN 140
Query: 520 LIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIK 579
+K F V D ++++ E N ++ ++K
Sbjct: 141 FLKSVF-QNNVTFNTNEDFRSQFN----------ADWASKLLIVVDEVLLNRREDSERLK 189
Query: 580 QMTGGDCMTARLNYGNTYSESPASFTPFIVPNK--HLFVRNPDD-AWWRRYIVIPFDKPI 636
++ + + +E + N + + + +W R I + +
Sbjct: 190 NLSTTLSYKVEVKGKDR-NEISFFAKFVLCSNNELLPVIIDVGETRYWVRKI-----ERL 243
Query: 637 ANRDASFAQKLETKYTL 653
+ D F QKL+ +
Sbjct: 244 DSDDTDFLQKLKAEIPA 260
>gi|313677591|ref|YP_004055587.1| hypothetical protein Ftrac_3509 [Marivirga tractuosa DSM 4126]
gi|312944289|gb|ADR23479.1| hypothetical protein Ftrac_3509 [Marivirga tractuosa DSM 4126]
Length = 405
Score = 49.0 bits (115), Expect = 0.003, Method: Composition-based stats.
Identities = 41/204 (20%), Positives = 74/204 (36%), Gaps = 31/204 (15%)
Query: 459 PFVEGEPS-QEFLDLVSGYFESE-EV-MDYFTRCVGMALLGGNKAQRFIHIR---GVGGS 512
+ E S + F ++ F+S+ E+ +DYFT Q + G+
Sbjct: 84 NYEPKEGSIENFKAYMNHIFQSQYELGLDYFTILY------QKPTQALPILCLVSRERGT 137
Query: 513 GKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDE 572
GK+T++NL K FG+ +N + D R + L ++ I E + +
Sbjct: 138 GKTTILNLSKLIFGDNMTVN-KTEDF---RSQYNEDWSSEL-------LIGIDEALLDRK 186
Query: 573 INAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVI-- 630
++ +IK ++ ++ Y + + N D RY VI
Sbjct: 187 EDSERIKNLSTAKTTKSQAKYKQRVEQE-FFGKFILCSNHEETFIPIDQG-ETRYWVIKV 244
Query: 631 -PFDKPIANRDASFAQKLETKYTL 653
PF+ D +KLE +
Sbjct: 245 KPFE---GEEDPFLIEKLEKEIPA 265
>gi|296161904|ref|ZP_06844705.1| Primase 2 [Burkholderia sp. Ch1-1]
gi|295887923|gb|EFG67740.1| Primase 2 [Burkholderia sp. Ch1-1]
Length = 636
Score = 49.0 bits (115), Expect = 0.004, Method: Composition-based stats.
Identities = 13/64 (20%), Positives = 21/64 (32%), Gaps = 6/64 (9%)
Query: 208 REITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNY 267
A L+ E + W+ + A+ H G +I WS+ Y E
Sbjct: 10 ERARAALAMVPAE----DYATWVDMAFAIKHGF--GEAGFDIWDEWSRTAHNYSERAARV 63
Query: 268 KWDT 271
W +
Sbjct: 64 TWRS 67
>gi|304383183|ref|ZP_07365656.1| conserved hypothetical protein [Prevotella marshii DSM 16973]
gi|304335654|gb|EFM01911.1| conserved hypothetical protein [Prevotella marshii DSM 16973]
Length = 281
Score = 48.6 bits (114), Expect = 0.004, Method: Composition-based stats.
Identities = 27/174 (15%), Positives = 55/174 (31%), Gaps = 23/174 (13%)
Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542
MDY L K + + +GKS +N +K F + +
Sbjct: 91 MDYLQLLY---LQPVQKLPILLMVSEERNTGKSMFLNFLKAVF--------QNNVTFNTN 139
Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602
+ N G ++++ E N ++ ++K ++ + E
Sbjct: 140 EDFRSQFNSDWA---GKLLIVVDEVLLNRREDSERLKNLSTTLSYKVEAKGKDR-DEISF 195
Query: 603 SFTPFIVPNK--HLFVRNPDD-AWWRRYIVIPFDKPIANRDASFAQKLETKYTL 653
+ N + + + +W R I + + D F QKL+T+
Sbjct: 196 FAKFVLCSNNESLPVIIDMGETRYWVRKI-----NRLESDDTDFLQKLKTEIPA 244
>gi|160941777|ref|ZP_02089104.1| hypothetical protein CLOBOL_06673 [Clostridium bolteae ATCC
BAA-613]
gi|158435274|gb|EDP13041.1| hypothetical protein CLOBOL_06673 [Clostridium bolteae ATCC
BAA-613]
Length = 102
Score = 48.6 bits (114), Expect = 0.004, Method: Composition-based stats.
Identities = 19/93 (20%), Positives = 29/93 (31%), Gaps = 7/93 (7%)
Query: 7 KEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKL----PACGFGFVCGVGE 62
++ A G + PL K P +++ +IDK P G G
Sbjct: 8 RQYALAYAKVGMAVFPLVPKSKNPATQHGFQDATTDFNQIDKWWMKNPNYNIGIATGQVS 67
Query: 63 QPLYAFDIDSKDEKTANT---FKDTFEILHGTP 92
L D+D EK + +D P
Sbjct: 68 GGLIVIDLDIDKEKGKHGNETLRDWEAEQGQLP 100
>gi|37651330|ref|NP_932697.1| helicase [Choristoneura fumiferana DEF MNPV]
gi|37499239|gb|AAQ91638.1| helicase [Choristoneura fumiferana DEF MNPV]
Length = 1221
Score = 48.6 bits (114), Expect = 0.004, Method: Composition-based stats.
Identities = 28/149 (18%), Positives = 56/149 (37%), Gaps = 16/149 (10%)
Query: 485 YFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKY-AFGNQYVINAEASDIMQNRP 543
G + N ++ +++ G SGKST L++ +++ D +
Sbjct: 893 MLMHFAGGLVAPTNYGRKAVYLPGEPMSGKSTFFELLESLVLMHKFDDETHTGDSKETSD 952
Query: 544 PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY--SESP 601
E K N L I+E + + + K+ D + + +
Sbjct: 953 KEVSKLNSQLY--------TINELKK---CSESFFKK--NADSINSDSKSRKYQGLLKYE 999
Query: 602 ASFTPFIVPNKHLFVRNPDDAWWRRYIVI 630
A++ IV N L+V + DDA R++++
Sbjct: 1000 ANYKMLIVNNNPLYVDDYDDAVQDRFLIV 1028
>gi|209170969|ref|YP_002268116.1| DNA helicase [Agrotis ipsilon multiple nucleopolyhedrovirus]
gi|208436560|gb|ACI28787.1| DNA helicase [Agrotis ipsilon multiple nucleopolyhedrovirus]
Length = 1210
Score = 48.6 bits (114), Expect = 0.004, Method: Composition-based stats.
Identities = 24/133 (18%), Positives = 47/133 (35%), Gaps = 12/133 (9%)
Query: 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMG 558
+ +++ G GSGKS+ + + + A + + +A+ + +L
Sbjct: 909 YEKCCLYLNGKPGSGKSSFFAVFDHFV--VVHKHDSAKYTLTKKDTNEMEADKMISQLY- 965
Query: 559 SRIVIISETNENDEINAAKIKQMT-GGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVR 617
+I+E + + K T Y + +F IV NK L +
Sbjct: 966 ----VINEMK---VCDDSFFKSTADSTKSNTVCRKYEGSQKYE-GNFKLMIVNNKPLHIS 1017
Query: 618 NPDDAWWRRYIVI 630
+ D R+ VI
Sbjct: 1018 DYDKGVRNRFAVI 1030
>gi|148233185|ref|NP_001090849.1| regulatory factor X, 7 [Xenopus (Silurana) tropicalis]
gi|126632049|gb|AAI33721.1| rfx7 protein [Xenopus (Silurana) tropicalis]
Length = 1439
Score = 48.6 bits (114), Expect = 0.004, Method: Composition-based stats.
Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 7/95 (7%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
+WI + + + Y Y + N +S +K +K
Sbjct: 110 SWIRNTLEEHPETSLPKQEVYDEYKSYCD---NLGYHPLSAADFGKIMKN--VFPNMKAR 164
Query: 755 KIEKEWKSKRIIKGLKLKPAFESVDDNSNIIDFKR 789
++ KSK GL+ K AF + N +DF +
Sbjct: 165 RLGTRGKSKYCYSGLR-KKAFVHMPSLPN-LDFNK 197
>gi|255690110|ref|ZP_05413785.1| primase C 2 family protein [Bacteroides finegoldii DSM 17565]
gi|260624392|gb|EEX47263.1| primase C 2 family protein [Bacteroides finegoldii DSM 17565]
Length = 625
Score = 48.6 bits (114), Expect = 0.004, Method: Composition-based stats.
Identities = 16/98 (16%), Positives = 39/98 (39%), Gaps = 3/98 (3%)
Query: 174 FKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVV 233
+ ++ + S PS + + + + + + G + NG +D W+ V
Sbjct: 6 PEEWENVPSNTANSNTSNTPSAYSNTSEDTRAKVERVLSLIEQKGIDITNG-YDNWLKVG 64
Query: 234 MAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDT 271
A+ E + + +G R S+Q Y + + +++
Sbjct: 65 FALTSEFQEAGRGF--FHRVSRQNPEYKASDTDKQYNK 100
>gi|157865925|ref|XP_001681669.1| hypothetical protein [Leishmania major strain Friedlin]
gi|68124967|emb|CAJ02695.1| conserved hypothetical protein [Leishmania major strain Friedlin]
Length = 543
Score = 48.6 bits (114), Expect = 0.004, Method: Composition-based stats.
Identities = 30/146 (20%), Positives = 47/146 (32%), Gaps = 23/146 (15%)
Query: 161 DTPLLSEEDV--EYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTN----------- 207
D P S E + + + L++ ++ + P T Y N
Sbjct: 393 DAPAESAEQLRRAAVLDATTKHRFKLIRPRQIMGPQATRAV-EYDAYGNVVPPFLTEAAK 451
Query: 208 ----REITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGS-TYDE 262
+ +TA L S+D W+ V +A+H+ E R+S + Y
Sbjct: 452 WRRFKAVTAKLRTLPPRAAE-SYDVWVRVGLALHN-FSNEDHVFEEWVRFSLKSPLKYSR 509
Query: 263 ENFNYKWDTFDFEEIGDTAKKRSTFT 288
E KW FE D R F
Sbjct: 510 EVCRKKW--VQFERNPDALNWRRGFN 533
>gi|328720087|ref|XP_003246947.1| PREDICTED: non-capsid protein NS-1-like [Acyrthosiphon pisum]
Length = 539
Score = 48.6 bits (114), Expect = 0.004, Method: Composition-based stats.
Identities = 38/251 (15%), Positives = 78/251 (31%), Gaps = 46/251 (18%)
Query: 422 LDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF----LDLVSGYF 477
L+ + +L +D +D + K + + F + Y+
Sbjct: 293 LNKNLNYLCARDKYVD-RDLELWNIKLMHMSLKDFDNYYKDDNVHPYFNAYNRNFDHVYY 351
Query: 478 ESEEVMDYFTRCVGMALLGGNKAQRFIHI-------------------RGVGGSGKSTLM 518
+E + + N F + +GK+
Sbjct: 352 NVQESVRIANELLLYQF-DDNSENVFFFLTDVLNVIDKRVPKCNTLAIHAPPNAGKNYFF 410
Query: 519 NLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN-ENDEINAAK 577
+ + F N V+ N + + +G R+V+ +E N E + +N
Sbjct: 411 DAVASFFINYGVLGTANKT-----------NNFAFMEAVGKRLVLWNEPNYEANHVNE-- 457
Query: 578 IKQMTGGDCMTARLNYG-NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI 636
+K + GGD + Y + + P I+ N +L + A+ R + +
Sbjct: 458 LKALLGGDSCRVAVKYKSDQALQGPP---IIILTNDNLSIFGMS-AFQPRIKLYNWQSAP 513
Query: 637 ANRDASFAQKL 647
RD + +KL
Sbjct: 514 FLRD--YDKKL 522
>gi|55376509|ref|YP_134361.1| conjugation protein [Haloarcula marismortui ATCC 43049]
gi|55229234|gb|AAV44655.1| bacterial conjugation protein [Haloarcula marismortui ATCC 43049]
Length = 1456
Score = 48.6 bits (114), Expect = 0.004, Method: Composition-based stats.
Identities = 28/181 (15%), Positives = 61/181 (33%), Gaps = 20/181 (11%)
Query: 606 PFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVK- 664
PF+ DD++ VI + + + ++ ++
Sbjct: 1289 PFVPSTDLPVPEYTDDSYA--IGVI-------EDEQNLELYTRDSDATKDLAGLIEAIEN 1339
Query: 665 -AYISKGLDVDIPEVCLKAKEEERQGTDTYQ--AWIDDCCDIGENLWEESHSLAKSYSEY 721
G++ D P K+E+ D + A++ D + + +Y +Y
Sbjct: 1340 NELHLAGVEPDEPADKQSMKQED-HENDPFGIQAFVRDSIVKSGDGVVAVAEVYDAYEQY 1398
Query: 722 REQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDN 781
E Y+ K T L+ +R+K + +++R G++L A + + N
Sbjct: 1399 ATAE-EYEVKP--KNRFTRTLRD---HVAFERDKKWLDGQTRRCYVGIELDDAGDQEEPN 1452
Query: 782 S 782
Sbjct: 1453 D 1453
>gi|332521740|ref|ZP_08398191.1| hypothetical protein LacalDRAFT_2804 [Lacinutrix algicola 5H-3-7-4]
gi|332042570|gb|EGI78771.1| hypothetical protein LacalDRAFT_2804 [Lacinutrix algicola 5H-3-7-4]
Length = 398
Score = 48.6 bits (114), Expect = 0.005, Method: Composition-based stats.
Identities = 28/192 (14%), Positives = 62/192 (32%), Gaps = 25/192 (13%)
Query: 467 QEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIR---GVGGSGKSTLMNLIKY 523
E + +F + Y +++L N Q + +GK+T +N +K
Sbjct: 88 PETEKFLKHFFGEQ----YILGLDYLSVLWQNPTQVLPILCLVSNERNTGKTTFLNWVKS 143
Query: 524 AFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTG 583
F + + + N + N I+ + E + ++ ++K ++
Sbjct: 144 IF--------QNNMTINNNEDFRSRFNSDWAS---KLIIAVDEVLLDKREDSERLKNLST 192
Query: 584 GDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDA---WWRRYIVIPFDKPIANRD 640
+ + E + N D++ +W R +IPFD N
Sbjct: 193 AKTYKSEAKGKDK-VEGNFFGKFILCSNNEKNFVYIDNSEVRYWVR-KIIPFDLT--NDR 248
Query: 641 ASFAQKLETKYT 652
+ L+ +
Sbjct: 249 PDLLESLKKELP 260
>gi|261363790|ref|ZP_05976673.1| inner membrane protein [Neisseria mucosa ATCC 25996]
gi|288568370|gb|EFC89930.1| inner membrane protein [Neisseria mucosa ATCC 25996]
Length = 805
Score = 48.6 bits (114), Expect = 0.005, Method: Composition-based stats.
Identities = 18/94 (19%), Positives = 29/94 (30%), Gaps = 18/94 (19%)
Query: 208 REITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNY 267
EI LS D W+ ++ HE + ++ RWS+Q +Y +
Sbjct: 5 DEIEKALSYIEPH----DRDVWVNTAYSLKHEL--GEEAFDMWDRWSQQSDSYRSRDARS 58
Query: 268 KWDT------------FDFEEIGDTAKKRSTFTS 289
W + +D G T S
Sbjct: 59 VWKSIKNPTRTIASLFYDARANGYRPDTPYTPPS 92
>gi|323139022|ref|ZP_08074081.1| Bifunctional DNA primase/polymerase [Methylocystis sp. ATCC 49242]
gi|322395682|gb|EFX98224.1| Bifunctional DNA primase/polymerase [Methylocystis sp. ATCC 49242]
Length = 713
Score = 48.6 bits (114), Expect = 0.005, Method: Composition-based stats.
Identities = 39/245 (15%), Positives = 68/245 (27%), Gaps = 38/245 (15%)
Query: 13 AIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPA---CGFGFVCGVGEQPLYAFD 69
I G+ IP+ K P G W + +S+++ + G V G L D
Sbjct: 34 YIERGWSPIPIGFRSKAPSLPG-WTDLRISADEASRYFNGAPANIGVVLGQNSSGLSDVD 92
Query: 70 IDSKDEKTAN-TFKDTFEILHGTPIVRIGQKPKILIPFRMNK------------EGIKKK 116
+D + A F + G R + N + I K+
Sbjct: 93 LDCPEAIAAAPYFLPKTAAIFGRETARASH-----WLYYTNSASVNLSANVYFDDPIAKE 147
Query: 117 KTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTW----TTPPHRFKVEDTPLLSEEDVEY 172
+ ++ L + Q + H T + W P R + +D E
Sbjct: 148 RGAKARLVDLRLGPKVQTVFPGSAHEDTSEPIAWEPGCDGEPARVECDDLLRRVERLAAC 207
Query: 173 LF------------KFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEE 220
+ LV+ S SK + R + + F +
Sbjct: 208 SLLARHWPAHGARHDARLAVAGVLVRAGFSESESKLFAEALARAVGDEDARDFAAAIRST 267
Query: 221 FYNGS 225
+ S
Sbjct: 268 YARAS 272
>gi|238063625|ref|ZP_04608334.1| bifunctional DNA primase/polymerase [Micromonospora sp. ATCC 39149]
gi|237885436|gb|EEP74264.1| bifunctional DNA primase/polymerase [Micromonospora sp. ATCC 39149]
Length = 291
Score = 48.6 bits (114), Expect = 0.005, Method: Composition-based stats.
Identities = 23/147 (15%), Positives = 37/147 (25%), Gaps = 5/147 (3%)
Query: 43 SEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKI 102
+ ID +P G D+D + + P R
Sbjct: 65 AAIIDAVPRGQLALRTGAASG-TVVVDVDPR--HGGHHSMAALITEGLLPRTRYAVTGSN 121
Query: 103 LIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFV-AYNIHPKTKKEYTWTTPPHRFKVED 161
+ G + +DI G Y V + H +T + Y W H E
Sbjct: 122 GLHLYYRHPGTSVISRPMPGRYGIDIKADGGYVVLPPSRHQRTGRPYRWADGEHDLT-EM 180
Query: 162 TPLLSEEDVEYLFKFFQEITVPLVKDK 188
P L + + + T
Sbjct: 181 APALLDACQAAPTRTVSDTTRSTRTPG 207
>gi|90592797|ref|YP_529750.1| helicase [Agrotis segetum nucleopolyhedrovirus]
gi|71559247|gb|AAZ38246.1| helicase [Agrotis segetum nucleopolyhedrovirus]
Length = 1213
Score = 48.6 bits (114), Expect = 0.005, Method: Composition-based stats.
Identities = 24/133 (18%), Positives = 47/133 (35%), Gaps = 12/133 (9%)
Query: 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMG 558
+ +++ G GSGKS+ + + + A + + +A+ + +L
Sbjct: 912 YEKCCLYLNGKPGSGKSSFFAVFDHFV--VVHKHDSAKYTLTKKDTNEMEADKMISQLY- 968
Query: 559 SRIVIISETNENDEINAAKIKQMT-GGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVR 617
+I+E + + K T Y + +F IV NK L +
Sbjct: 969 ----VINEMK---VCDDSFFKSTADSTKSNTVCRKYEGSQKYE-GNFKLLIVNNKPLHIS 1020
Query: 618 NPDDAWWRRYIVI 630
+ D R+ VI
Sbjct: 1021 DYDKGVRNRFAVI 1033
>gi|254196284|ref|ZP_04902708.1| conserved hypothetical protein [Burkholderia pseudomallei S13]
gi|169653027|gb|EDS85720.1| conserved hypothetical protein [Burkholderia pseudomallei S13]
Length = 950
Score = 48.6 bits (114), Expect = 0.005, Method: Composition-based stats.
Identities = 10/49 (20%), Positives = 17/49 (34%), Gaps = 2/49 (4%)
Query: 224 GSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTF 272
+ W MA+ E +G + WS Y+ + W +F
Sbjct: 17 DDRNTWRQAGMALKAEF--GEEGFTLWNEWSLGAQNYNARDARDVWKSF 63
>gi|237711319|ref|ZP_04541800.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
gi|229454014|gb|EEO59735.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA]
Length = 396
Score = 48.2 bits (113), Expect = 0.005, Method: Composition-based stats.
Identities = 27/174 (15%), Positives = 55/174 (31%), Gaps = 23/174 (13%)
Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542
MDY L K + + +GKST +N +K F + +
Sbjct: 107 MDYLQLLY---LQPIQKLPILLLVSEERNTGKSTFLNFLKALF--------QNNVTFNTN 155
Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602
+ N G ++++ E N ++ ++K ++ + E
Sbjct: 156 EDFRSQFNSDWA---GKLLIVVDEVLLNRREDSERLKNLSTTLSYKVEAKGKDR-DEIAF 211
Query: 603 SFTPFIVPNK--HLFVRNPDD-AWWRRYIVIPFDKPIANRDASFAQKLETKYTL 653
+ N + + + +W R I + + D F QKL+ +
Sbjct: 212 FAKFVLCSNNEYLPVIIDAGETRYWVRKI-----DRLQSDDTDFLQKLKAEIPA 260
>gi|323138104|ref|ZP_08073177.1| Bifunctional DNA primase/polymerase [Methylocystis sp. ATCC 49242]
gi|322396566|gb|EFX99094.1| Bifunctional DNA primase/polymerase [Methylocystis sp. ATCC 49242]
Length = 708
Score = 48.2 bits (113), Expect = 0.005, Method: Composition-based stats.
Identities = 39/245 (15%), Positives = 68/245 (27%), Gaps = 38/245 (15%)
Query: 13 AIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPA---CGFGFVCGVGEQPLYAFD 69
I G+ IP+ K P G W + +S+++ + G V G L D
Sbjct: 33 YIERGWSPIPIGFRSKAPSLPG-WTDLRISADEASRYFNGAPANIGVVLGQNSSGLSDVD 91
Query: 70 IDSKDEKTAN-TFKDTFEILHGTPIVRIGQKPKILIPFRMNK------------EGIKKK 116
+D + A F + G R + N + I K+
Sbjct: 92 LDCPEAIAAAPYFLPKTAAIFGRETARASH-----WLYYTNSASVNLSANVYFDDPIAKE 146
Query: 117 KTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTW----TTPPHRFKVEDTPLLSEEDVEY 172
+ ++ L + Q + H T + W P R + +D E
Sbjct: 147 RGAKARIVDLRLGPKVQTVFPGSAHEDTSEPIAWEPGCDGEPARVECDDLFRRVERLAAC 206
Query: 173 LF------------KFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEE 220
+ LV+ S SK + R + + F +
Sbjct: 207 SLLARHWPAHGARHDARLAVAGVLVRAGFSESESKLFAEALARAVGDEDARDFAAAIRST 266
Query: 221 FYNGS 225
+ S
Sbjct: 267 YARAS 271
>gi|292496079|gb|ADE29180.1| conserved hypothetical protein [uncultured virus]
Length = 266
Score = 48.2 bits (113), Expect = 0.005, Method: Composition-based stats.
Identities = 22/181 (12%), Positives = 65/181 (35%), Gaps = 23/181 (12%)
Query: 613 HLFVRNPDDAWWRRYIVIPFDKPI----------ANRDASFAQKLETKYTLEAKKWFLKG 662
+ A WRR+++I F A+R+ ++ + +
Sbjct: 1 MPVFSQDNHAIWRRWLLIEFPFTFSDELPDAKEPADREQLLSRMTTDEQLEGLLLLCQQE 60
Query: 663 VKAYISKGLDVDIPEV-------CLKAKEEERQGTDTYQAWIDDCCDIG--ENLWEESHS 713
++ + G D D+ E + +E+ ++ + A+ C + ++ +
Sbjct: 61 IERWKPDGPDGDVNEEFFADAAPVPQVREKMKKAAEPVFAFSAACLEPADKDDAFLLKDR 120
Query: 714 LAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773
+ + Y + ++E D ++ L + ++ ++ + + K + +G++ P
Sbjct: 121 VRRCYQAFADEE---DVPNLTANEFGERLVNQR-DMSLQSDRKMIDGQRKYVYQGVQFTP 176
Query: 774 A 774
Sbjct: 177 R 177
>gi|215401469|ref|YP_002332773.1| helicase [Spodoptera litura nucleopolyhedrovirus II]
gi|209484010|gb|ACI47443.1| helicase [Spodoptera litura nucleopolyhedrovirus II]
Length = 1217
Score = 48.2 bits (113), Expect = 0.006, Method: Composition-based stats.
Identities = 24/133 (18%), Positives = 48/133 (36%), Gaps = 12/133 (9%)
Query: 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMG 558
+ +++ G GSGKS+ + + + A+ + + +A+ + +L
Sbjct: 916 YEKCCLYLNGKPGSGKSSFFAVFDHFI--VVHKHDTANYTLTKKDTNEMEADKMISQLY- 972
Query: 559 SRIVIISETNENDEINAAKIKQMT-GGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVR 617
+I+E + + K T Y + +F IV NK L +
Sbjct: 973 ----VINEMK---VCDDSFFKSTADSTKSNTVCRKYEGSQKYE-GNFKLLIVNNKPLHIS 1024
Query: 618 NPDDAWWRRYIVI 630
+ D R+ VI
Sbjct: 1025 DYDKGVRNRFAVI 1037
>gi|302536929|ref|ZP_07289271.1| predicted protein [Streptomyces sp. C]
gi|302445824|gb|EFL17640.1| predicted protein [Streptomyces sp. C]
Length = 336
Score = 48.2 bits (113), Expect = 0.006, Method: Composition-based stats.
Identities = 31/171 (18%), Positives = 47/171 (27%), Gaps = 33/171 (19%)
Query: 17 GFKLIPLRLGDKRP--------QRLGKWEEQLLSSEK---IDK------LPACGFGFVCG 59
G+ + PLR GDKRP R G+ + + E+ +D +
Sbjct: 48 GWPVFPLRPGDKRPAGHPERNCPRTGRCTDGHRTPEQRATLDTEQITACWQTAPYNVGLA 107
Query: 60 VGEQPLYAFDIDSKDEKTANTFKDTF-----EILHGTPIVRIG-QKPKILIPFRMNK--- 110
G L D+D E D + R G + P R +
Sbjct: 108 TGPAGLLVVDLDIPKEDDGPAPADWAGATDGLDVFAMICERAGERLPTETFTVRTRRGGQ 167
Query: 111 ------EGIKKKKTTEST-QGHLDILGCGQYFVAYNIHPKTKKEYTWTTPP 154
K+ + + +D G Y VA T P
Sbjct: 168 HLYFTAPAEKRLRGSAGRLGWKVDTRAWGGYVVAAGSTVGTGSYEIIHDAP 218
>gi|220930664|ref|YP_002507573.1| primase [Clostridium cellulolyticum H10]
gi|220000992|gb|ACL77593.1| Primase 2 [Clostridium cellulolyticum H10]
Length = 741
Score = 48.2 bits (113), Expect = 0.006, Method: Composition-based stats.
Identities = 25/133 (18%), Positives = 41/133 (30%), Gaps = 19/133 (14%)
Query: 209 EITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEI--ARRWSKQGST-YDEENF 265
++ L + + EW+ V MA+ G WS+Q + Y
Sbjct: 7 DLRELLQYIHPA--SLDYQEWLSVGMALK------EDGYTAADWDTWSRQDTKRYHSGEC 58
Query: 266 NYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFS---DAYNKAMFSIYKKG 322
KWDTF T T + +G L + + +K + KG
Sbjct: 59 FKKWDTFRGTSSPVT---AGTIVQMAKDNGWLPKRNESGHELNWEDSIGSKDDLVVINKG 115
Query: 323 HF--LYTADTKAW 333
+ +AW
Sbjct: 116 WLEGKEVIEPEAW 128
>gi|319902214|ref|YP_004161942.1| DNA primase [Bacteroides helcogenes P 36-108]
gi|319417245|gb|ADV44356.1| putative DNA primase [Bacteroides helcogenes P 36-108]
Length = 1033
Score = 48.2 bits (113), Expect = 0.006, Method: Composition-based stats.
Identities = 53/337 (15%), Positives = 101/337 (29%), Gaps = 64/337 (18%)
Query: 427 RFLGEQDGIL-----DLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEE 481
+ + D+E G+ + ++K ++ E +
Sbjct: 671 FLINTSNFTWRKKTEDIEKGELYENN-LHLLSKMCAIGYMLME------------CKDAN 717
Query: 482 VMDYFTRCVGMALLGGNKAQRFIHIRGV--GGSGKSTLMNLIKYAFGNQYVINAEASDIM 539
V +G + G G G SGKS + L++ Y+
Sbjct: 718 VTRAV---IG--MDGKQSE------VGDSNGRSGKSLVGELLRQVVDTVYISGKRTDIFN 766
Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT----ARLNYGN 595
+ R+V I + N +TG + AR+ Y
Sbjct: 767 DSFIWNDINEQT--------RLVFIDDVMLNFNF-EFLFPNLTGDWTVNKKGGARITY-- 815
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF-----DKPIANRDASFAQKLETK 650
+++SP +I N +R ++ R +I F D+ D E
Sbjct: 816 PFAKSP---KVYIPTNH--AIRGTGSSYTDRQWLIAFSDFYNDQHKPMDDFGVLFFSEWD 870
Query: 651 YTLEAKKW--FLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGEN-L 707
+T W ++ Y+ G+ E + K + G T +W D+ E+
Sbjct: 871 FTQWNLTWNMLANCIQLYLKFGVVQAPGERLQQRKLRQEIGE-TIISWADEYFSSEEHCH 929
Query: 708 WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQ 744
+ ++ Y Q+ Y IS+ +K+
Sbjct: 930 RTPRKEIYDNFRNYDPQQSKY----ISSTAFKDKIKK 962
>gi|222148720|ref|YP_002549677.1| Prophage antirepressor protein [Agrobacterium vitis S4]
gi|221735706|gb|ACM36669.1| Prophage antirepressor protein [Agrobacterium vitis S4]
Length = 263
Score = 48.2 bits (113), Expect = 0.006, Method: Composition-based stats.
Identities = 14/111 (12%), Positives = 34/111 (30%), Gaps = 11/111 (9%)
Query: 662 GVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEY 721
+ GL + E K + + + +ID+C + + + Y ++
Sbjct: 154 AAALWRELGLPMPKDETSDKERRQAQGLMKYVYDFIDECMVFDQKAEVTGKEVYQRYQQW 213
Query: 722 REQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLK 772
I + L + G +++ + G++LK
Sbjct: 214 SATNNA---PYIMNSSFGRFLIRAGI--------VKRHVSTGSRYIGVRLK 253
>gi|125860194|ref|YP_001036364.1| DNA helicase [Spodoptera frugiperda MNPV]
gi|120969339|gb|ABM45782.1| DNA helicase [Spodoptera frugiperda MNPV]
gi|167833753|gb|ACA02629.1| helicase [Spodoptera frugiperda MNPV]
gi|319997407|gb|ADV91305.1| DNA helicase [Spodoptera frugiperda MNPV]
Length = 1228
Score = 47.8 bits (112), Expect = 0.007, Method: Composition-based stats.
Identities = 24/133 (18%), Positives = 50/133 (37%), Gaps = 12/133 (9%)
Query: 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMG 558
+ +++ G GSGKS+ +++ + + A + + +A+ + +L
Sbjct: 927 YEKCCLYLNGKPGSGKSSFFAVLEPSV--VVHKHDSAKYTLTKKDTNEMEADKMISQLY- 983
Query: 559 SRIVIISETNENDEINAAKIKQMT-GGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVR 617
+I+E + + K + Y + A+F IV NK L +
Sbjct: 984 ----VINEMK---VCDDSFFKSTADSTKSNSVCRKYEGSQKYE-ANFKLLIVNNKPLHIS 1035
Query: 618 NPDDAWWRRYIVI 630
+ D R+ VI
Sbjct: 1036 DYDKGVRNRFAVI 1048
>gi|301775138|ref|XP_002922988.1| PREDICTED: DNA-binding protein RFX7-like [Ailuropoda melanoleuca]
Length = 1460
Score = 47.8 bits (112), Expect = 0.007, Method: Composition-based stats.
Identities = 21/110 (19%), Positives = 35/110 (31%), Gaps = 7/110 (6%)
Query: 680 LKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVT 739
A R +WI + + + Y Y + N +S
Sbjct: 95 QNAVSSSRAQQMHAFSWIRNTLEEHPETSLPKQEVYDEYKSYCD---NLGYHPLSAADFG 151
Query: 740 LNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDNSNIIDFKR 789
+K +K ++ KSK GL+ K AF + N +DF +
Sbjct: 152 KIMKN--VFPNMKARRLGTRGKSKYCYSGLR-KKAFVHMPTLPN-LDFHK 197
>gi|74000781|ref|XP_544696.2| PREDICTED: similar to regulatory factor X, 5 isoform 1 [Canis
familiaris]
Length = 1460
Score = 47.8 bits (112), Expect = 0.007, Method: Composition-based stats.
Identities = 21/110 (19%), Positives = 35/110 (31%), Gaps = 7/110 (6%)
Query: 680 LKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVT 739
A R +WI + + + Y Y + N +S
Sbjct: 95 QNAVSSSRAQQMHAFSWIRNTLEEHPETSLPKQEVYDEYKSYCD---NLGYHPLSAADFG 151
Query: 740 LNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDNSNIIDFKR 789
+K +K ++ KSK GL+ K AF + N +DF +
Sbjct: 152 KIMKN--VFPNMKARRLGTRGKSKYCYSGLR-KKAFVHMPTLPN-LDFHK 197
>gi|237724850|ref|ZP_04555331.1| conserved hypothetical protein [Bacteroides sp. D4]
gi|229436588|gb|EEO46665.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4]
Length = 410
Score = 47.8 bits (112), Expect = 0.007, Method: Composition-based stats.
Identities = 34/188 (18%), Positives = 64/188 (34%), Gaps = 27/188 (14%)
Query: 472 LVSGYFESE-EV-MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529
LV F + E+ MDY L K + + +GKST +N +K F +
Sbjct: 106 LVEHIFGEQYELGMDYLQLLY---LKPTQKLPILLLVSEERNTGKSTFLNFLKALF-QEN 161
Query: 530 VINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTA 589
V D G ++++ E N ++ ++K ++
Sbjct: 162 VTFNTNEDFRSQFN----------ADWAGKLMIVVDEVLLNRREDSERLKNLSTAHSYKM 211
Query: 590 RLNYGNTYSESPASFTPFIVP----NKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQ 645
+ Y F F++ N +++ + +W R + + D SF Q
Sbjct: 212 EAKGKDRYEV--QFFAKFVLCSNNENFPVYIEPEETRYWVRKV-----SRLERDDTSFLQ 264
Query: 646 KLETKYTL 653
KL+ +
Sbjct: 265 KLKDEIPA 272
>gi|156633500|gb|ABU90823.1| E1 [Macaca fascicularis papillomavirus type 3b]
Length = 627
Score = 47.8 bits (112), Expect = 0.007, Method: Composition-based stats.
Identities = 31/198 (15%), Positives = 72/198 (36%), Gaps = 32/198 (16%)
Query: 461 VEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTL-MN 519
+G + + + +++ E + + A L G + I + G +GKS M+
Sbjct: 412 DDGGDWRPIVQFLR--YQNVEFITFL--SAFKAFLKGIPKKSCIVLYGPPNTGKSYFGMS 467
Query: 520 LIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISE-TNENDEINAAKI 578
L+++ G+ ++ L L +++ ++ + T + +
Sbjct: 468 LMQFLQGSIIS-------------YVNSNSHFWLAPLAEAKVAMLDDATPQCWSYIDTYM 514
Query: 579 KQMTGGDCMTARLNYGNTYSES-PASFTPFIVPNKHLFVRNPDDAWWR----RYIVIPFD 633
+ + G+ M+ + N P I N + V D WR R +V F+
Sbjct: 515 RSVLDGNPMSIDRKHKNLIQMKCPP---LIITSNTN--VGEDDR--WRYLHSRVVVFKFE 567
Query: 634 KPIA-NRDASFAQKLETK 650
+ +++ + +L K
Sbjct: 568 QAFPFDQNGNPVYELSDK 585
>gi|325268696|ref|ZP_08135325.1| virulence-associated protein E [Prevotella multiformis DSM 16608]
gi|324988940|gb|EGC20894.1| virulence-associated protein E [Prevotella multiformis DSM 16608]
Length = 301
Score = 47.8 bits (112), Expect = 0.008, Method: Composition-based stats.
Identities = 40/266 (15%), Positives = 91/266 (34%), Gaps = 31/266 (11%)
Query: 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMG 558
+ + + G G K+T ++L+ + + ++ L+G
Sbjct: 46 RNHTCLVLTGEQGKFKTTFLDLLC-----------PPALSDYQYTGKIYPQEKDVLSLIG 94
Query: 559 SRIVIISE--TNENDEINAAKIKQMTGGDCMTARLNYGNTYSESP--ASFTPFIVPNKHL 614
++I + ++ + ++K + + R+ Y E P ASF + N L
Sbjct: 95 QNLIINIDDQLKALNKRDENELKNLITCPQVKYRMPYEKHIVERPHLASFVASVNGNDFL 154
Query: 615 FVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD 674
RR+ +PF+ + D + ++ Y EAK G + + + D +
Sbjct: 155 TDPTGS----RRF--LPFEVLAIDIDRAKTIPMDAVYG-EAKALLKDGFRYWFN---DEE 204
Query: 675 IPEVCL--KAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKR 732
I E+ +A + + + + + SE Y R++
Sbjct: 205 IAELHRNSEAFQVYTAEMELLLRY----FTFPTEAEKAIKRFYMTNSEIVGYLSVYTRQQ 260
Query: 733 ISTRTVTLNLKQKGFIGGIKREKIEK 758
+S + + L++ G+ +R
Sbjct: 261 LSPKRMGEALRKAGYSRECRRVNGNP 286
>gi|295396334|ref|ZP_06806501.1| N- superfamily bifunctional DNA primase/polymerase [Brevibacterium
mcbrellneri ATCC 49030]
gi|294970829|gb|EFG46737.1| N- superfamily bifunctional DNA primase/polymerase [Brevibacterium
mcbrellneri ATCC 49030]
Length = 208
Score = 47.8 bits (112), Expect = 0.008, Method: Composition-based stats.
Identities = 21/139 (15%), Positives = 49/139 (35%), Gaps = 14/139 (10%)
Query: 10 AKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKL----PACGFGFVCGVGEQPL 65
A++ +G + P +KRP + + E+++ P G G +
Sbjct: 25 ARELAQSGVPVFPCVPYEKRPLTPRGFHDASADPEQVEMWWRHTPLASIGIPTGQPSG-M 83
Query: 66 YAFDID----SKDEKTANTFKDTFEILHGTPIVRIGQKPKILIP-FRMNKEGIKKKKTTE 120
A D+D + + + +VR P + + G+++ ++ +
Sbjct: 84 VAVDVDQHGRVDGYQAIRRARQAGLVAGWEMLVR---TPTGGMHAYYPAAPGLEQ-RSWQ 139
Query: 121 STQGHLDILGCGQYFVAYN 139
+ + +D G G Y +
Sbjct: 140 AARAGVDFRGDGGYVIVPP 158
>gi|302553095|ref|ZP_07305437.1| hypothetical protein SSQG_04324 [Streptomyces viridochromogenes DSM
40736]
gi|302470713|gb|EFL33806.1| hypothetical protein SSQG_04324 [Streptomyces viridochromogenes DSM
40736]
Length = 295
Score = 47.8 bits (112), Expect = 0.008, Method: Composition-based stats.
Identities = 37/209 (17%), Positives = 60/209 (28%), Gaps = 42/209 (20%)
Query: 17 GFKLIPLRLGDKRPQ---------------RLGKWEEQLLSSEKI--DKLPACGFGFVCG 59
G+ +IPL KRP K E++ ++ ++ +
Sbjct: 12 GWPVIPLLPNAKRPAGHPERACPGTGRCASGHRKPEQRATTNPELIRATWATRPYNVGIA 71
Query: 60 VGEQPLYAFDIDSKD-------EKTANTFKDTFEILHGTPIV--RIGQKPKILIPFRMNK 110
G L D+D A + K E T R+ +
Sbjct: 72 TGPAGLLVIDLDVCKPEEPKGAPDGATSLKALCERTGHTVPATYRVRTARGGEHLYFTAP 131
Query: 111 EGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDV 170
G++ K + H+D G Y VA TTP ++V D E V
Sbjct: 132 AGMRLKNSANRLGPHIDTRAWGGYVVAPGS----------TTPDGAYEVND-----EAPV 176
Query: 171 EYLFKFFQEITVPLVKDK-KSIIPSKTWT 198
L + + K + P + T
Sbjct: 177 APLPWWLAALLTEHPKPAVVELAPVRDGT 205
>gi|123197436|ref|XP_001283791.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121843967|gb|EAX70861.1| hypothetical protein TVAG_571710 [Trichomonas vaginalis G3]
Length = 263
Score = 47.8 bits (112), Expect = 0.008, Method: Composition-based stats.
Identities = 39/252 (15%), Positives = 73/252 (28%), Gaps = 28/252 (11%)
Query: 499 KAQRFIHIRGVGGSGKSTLM-NLIKYAF-GNQYVINAEASDIMQNRPPEAGKANPSLIRL 556
K + + I G G+GK+T +++ G +I
Sbjct: 18 KNETALIIIGKQGTGKNTFFTDILCKLLEGYSNPNMTNLENICGKFNSSIEN-------- 69
Query: 557 MGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKH 613
++++ +E D +N+ +K + Y + + + N
Sbjct: 70 --MKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNVV 127
Query: 614 LFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDV 673
D RRY+V+ +D + L T + +
Sbjct: 128 PMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNP 183
Query: 674 D-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKR 732
IP + E + Y+ +ID+ + SL SY + Y
Sbjct: 184 RQIPHTEERQTLLEANKS-VYELFIDETNFECLDER----SLYDSYKQ---YCQEYGYMA 235
Query: 733 ISTRTVTLNLKQ 744
S RT N+K
Sbjct: 236 ASKRTFLANVKN 247
>gi|315442842|ref|YP_004075721.1| bifunctional DNA primase/polymerase famiily protein [Mycobacterium
sp. Spyr1]
gi|315261145|gb|ADT97886.1| bifunctional DNA primase/polymerase famiily protein [Mycobacterium
sp. Spyr1]
Length = 353
Score = 47.8 bits (112), Expect = 0.008, Method: Composition-based stats.
Identities = 29/193 (15%), Positives = 51/193 (26%), Gaps = 16/193 (8%)
Query: 48 KLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKIL---I 104
+ G G + D+D + + E HG G+
Sbjct: 104 RYAGHNIG---GRVPANIVVVDVDPR--SGGDESLAALERQHGRMPDAFGEISGRGDGGR 158
Query: 105 PFRMNKEGIKKKKTTESTQGHLDILGCGQYFV-AYNIHPKTKKEYTWTTPPHRFKVEDTP 163
+ ++ +G +DI Y V +IHP T + Y P
Sbjct: 159 HYWFRAP-AGPLSSSRLGRG-IDIKTHSGYVVLPPSIHPDTGRPYEKVDGPITPPPAWLA 216
Query: 164 LLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYT-NREITAFLSCFGEEFY 222
L + + +T + + T T + ++ N L G
Sbjct: 217 GLLLPEQPKPSTSTRAMTPATARTAHDFFNTGTGTGLSIEKFNENTSWRDVLEPHGWRPV 276
Query: 223 NGSHD----EWIP 231
G D W+
Sbjct: 277 GGDGDADGARWLH 289
>gi|256841352|ref|ZP_05546859.1| conserved hypothetical protein [Parabacteroides sp. D13]
gi|256737195|gb|EEU50522.1| conserved hypothetical protein [Parabacteroides sp. D13]
Length = 418
Score = 47.8 bits (112), Expect = 0.008, Method: Composition-based stats.
Identities = 28/194 (14%), Positives = 59/194 (30%), Gaps = 25/194 (12%)
Query: 465 PSQEFLDLVSGYFESE-EV-MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIK 522
L+ F + E+ MDY L K + + +GK+T +N +K
Sbjct: 109 DFPNIKKLLFHIFGEQYELGMDYLQLLY---LRPVQKLPILLLVSEERNTGKTTFLNFLK 165
Query: 523 YAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMT 582
F V D G ++++ E + ++ ++K ++
Sbjct: 166 ALF-QDNVTFNTNEDFRSQFN----------ADWAGKLLIVVDEVLLSRREDSERLKNLS 214
Query: 583 GGDCMTARLNYGNTYSESPASFTPFIVPNK--HLFVRNPDD-AWWRRYIVIPFDKPIANR 639
+ +E + N + + + +W R I + +
Sbjct: 215 TTLSYKVEAKGKDR-NEISFFAKFVLCSNNESLPVIIDEGETRYWVRKI-----SSLQSD 268
Query: 640 DASFAQKLETKYTL 653
D F +KL +
Sbjct: 269 DTDFLRKLIAEIPA 282
>gi|284162058|ref|YP_003400681.1| Bifunctional DNA primase/polymerase [Archaeoglobus profundus DSM
5631]
gi|284012055|gb|ADB58008.1| Bifunctional DNA primase/polymerase [Archaeoglobus profundus DSM
5631]
Length = 309
Score = 47.8 bits (112), Expect = 0.008, Method: Composition-based stats.
Identities = 48/253 (18%), Positives = 81/253 (32%), Gaps = 46/253 (18%)
Query: 11 KQAIHNGFKLIPLRLGDKRPQRLGK-----WEEQLLSSEK-----IDKLPACGFGFVCGV 60
++ G+K IPL KRP G W S+E+ + G V G
Sbjct: 17 EKYDQLGWKFIPLE--GKRPFWKGWDDPEKWYSGEYSNEETINEIVTSRFKFNVGIVTGS 74
Query: 61 GEQPLYAFDIDSK-------DEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGI 113
+ + D+D + +VR + P++L +K+ +
Sbjct: 75 LSK-ILRIDVDQPKILGWNPEPAIKKGGLAHTTSRGVALVVRS-ENPEVL---AFSKKLV 129
Query: 114 KKK------------KTTESTQGHLDILGCGQYFVAYN-IHPKTKKEYTWTTPPHRFKVE 160
K+K + T L+ILG G+ FVA IHP + Y W TP +
Sbjct: 130 KRKEEIDQSLLFYPEDAGKETVTILEILGDGRQFVAPPSIHPDKRTRYEWLTPLPNSPDQ 189
Query: 161 DTPLLSEEDVEYLF-------KFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAF 213
+ S E++ L + E+ K+K + +
Sbjct: 190 ILTINSIEELYSLLLECCANKELINELFEDYFKEKS--RADTGEEGKKADDLLEKWLEIL 247
Query: 214 LSCFGEEFYNGSH 226
L G++
Sbjct: 248 LKHLDVADDKGNY 260
>gi|294789713|ref|ZP_06754945.1| primase C 2 (PriCT-2) superfamily [Simonsiella muelleri ATCC 29453]
gi|294482350|gb|EFG30045.1| primase C 2 (PriCT-2) superfamily [Simonsiella muelleri ATCC 29453]
Length = 987
Score = 47.4 bits (111), Expect = 0.008, Method: Composition-based stats.
Identities = 12/64 (18%), Positives = 23/64 (35%), Gaps = 6/64 (9%)
Query: 208 REITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNY 267
I L+ + + W + A+ E G E+ WS+Q Y +++
Sbjct: 5 DNIQNALNHIDPQ----DRETWFRMGAAIKDEL--GENGFEMWDNWSRQSDNYKQQDAQS 58
Query: 268 KWDT 271
W +
Sbjct: 59 VWKS 62
>gi|269977396|ref|ZP_06184368.1| P4 family phage/plasmid primase [Mobiluncus mulieris 28-1]
gi|269934312|gb|EEZ90874.1| P4 family phage/plasmid primase [Mobiluncus mulieris 28-1]
Length = 283
Score = 47.4 bits (111), Expect = 0.009, Method: Composition-based stats.
Identities = 25/149 (16%), Positives = 49/149 (32%), Gaps = 10/149 (6%)
Query: 9 QAKQAIHNGFKLIPLRLGD----KRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVG-EQ 63
A + G+ + P + K P G ++ I + + G+ +
Sbjct: 19 AAIELAGRGWPVFPCQEAGREHPKAPYVRGGFKSATTDLGMIRRWWKEYPNALIGLALPK 78
Query: 64 PLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQ 123
L D+D ++ + ++ L T V G+ + GI +
Sbjct: 79 TLLVLDVDPRNGGSLEALQEKIGRLPETLRVESGRG-DGGTHYYFRHPGIPLY--GRNLP 135
Query: 124 GHLDIL--GCGQYFVAYNIHPKTKKEYTW 150
+D+ G G ++HP+T Y W
Sbjct: 136 EGVDLKEGGKGYVIAPPSLHPETGMPYKW 164
>gi|239905583|ref|YP_002952322.1| hypothetical protein DMR_09450 [Desulfovibrio magneticus RS-1]
gi|239795447|dbj|BAH74436.1| hypothetical protein [Desulfovibrio magneticus RS-1]
Length = 665
Score = 47.4 bits (111), Expect = 0.009, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 40/135 (29%), Gaps = 15/135 (11%)
Query: 24 RLGDKRPQR-LGKWEEQLLSSEKIDK--LPACGFGFVCGVGEQPLYAFDIDSKDEKTANT 80
+ K W+ D+ G CG L D +
Sbjct: 56 KAAKKYKGPVENGWQRWCREKRPFDQANFSTDRAGIACGPASGVL------VLDVDNHHL 109
Query: 81 FKDTFEILHGTPIVRIGQKPKIL-----IPFRMNKEGIKKKKTTESTQGHLDILGCGQYF 135
F+ + H + + K K + ++ + S +G +I G G
Sbjct: 110 FEAWIQEKHPDEPLPVTLKVKTGGHGERFHYYFQYPSGDEQYSCRSVKGIFEIRGIGGQI 169
Query: 136 VAYN-IHPKTKKEYT 149
+ +HP+T+K Y
Sbjct: 170 LCPGSLHPETRKPYI 184
>gi|284031274|ref|YP_003381205.1| Bifunctional DNA primase/polymerase [Kribbella flavida DSM 17836]
gi|283810567|gb|ADB32406.1| Bifunctional DNA primase/polymerase [Kribbella flavida DSM 17836]
Length = 307
Score = 47.4 bits (111), Expect = 0.009, Method: Composition-based stats.
Identities = 28/181 (15%), Positives = 56/181 (30%), Gaps = 34/181 (18%)
Query: 37 EEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRI 96
+ + ++ +P G+ L D+D A+ ++ L +V
Sbjct: 64 TDTARVAAIVNAVPGGQLAVRTGMVSG-LLVVDVD-----PAHGGWESLSELVARQLV-- 115
Query: 97 GQKPKILIP----------FRMNKEGIKKKKTTESTQGHLDILGCGQYFV-AYNIHPKTK 145
P+ L +R G+ + +D+ G Y V +IH +T+
Sbjct: 116 ---PRTLWVRTGSDGAHLYYRH--PGLHMPSRPMPNRPGIDVKADGGYVVLPPSIHHRTR 170
Query: 146 KEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQY 205
+ Y W T L V + +P + + PS + ++
Sbjct: 171 RPYAWGTGSD--------LADPAAVVEMPPPLIAACLPATPAESTHAPSA--PLSGPQRD 220
Query: 206 T 206
T
Sbjct: 221 T 221
>gi|299782825|gb|ADJ40823.1| Hypothetical phage protein [Lactobacillus fermentum CECT 5716]
Length = 274
Score = 47.4 bits (111), Expect = 0.009, Method: Composition-based stats.
Identities = 43/288 (14%), Positives = 87/288 (30%), Gaps = 39/288 (13%)
Query: 4 MQWKEQAKQAIHNGFKLIPLRLGDKRPQR-LGKWEEQLLSSEKIDKLPACGFGFVCGVGE 62
M K +A Q G + PL G K P + + E ++ I + + +G +
Sbjct: 1 MGAKRRALQLXQAGVPVYPLAPGSKTPPKGHHGYREATTDTDTILRW-SDDWGLGIDLFT 59
Query: 63 QPLYAFDIDSKDEKTANT-----------FKDTFEILHGTPIVRI--GQKPKILIP--FR 107
+ D+D K E + Q P + F+
Sbjct: 60 AGMLVVDLDRPGTDRNGHAVHGGKNGVKALKRYLEQHQRRLPHPMYAEQTPHGGLHLFFK 119
Query: 108 MNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSE 167
+++ K + + G +DILG FV + Y + + P +S
Sbjct: 120 LDQPLQKPTRKPNALPG-VDILGD---FVIASPSEVDGSPY------LVMQGQAQP-VSI 168
Query: 168 EDVEYLFKFFQEITVPLVKDKKSIIPSKTWT-NNNNRQYTNREITAFLSCFGEEFYNGSH 226
D + ++ L + + P+K + + YT R + G
Sbjct: 169 HDTATAPQLIVDL---LTAPQTAFNPTKANSFMKGQKTYTGR----LFDKIAQGANEGER 221
Query: 227 DEWIP-VVMAVHHETRGSSKGKEI--ARRWSKQGSTYDEENFNYKWDT 271
+ W+ V ++ + + + D+ N + +
Sbjct: 222 NNWLASVTGSILNAGTDPANAYYLIGWINERFISPPLDDREVNAVFKS 269
>gi|255282238|ref|ZP_05346793.1| RecA-family ATPase [Bryantella formatexigens DSM 14469]
gi|255267186|gb|EET60391.1| RecA-family ATPase [Bryantella formatexigens DSM 14469]
Length = 744
Score = 47.4 bits (111), Expect = 0.009, Method: Composition-based stats.
Identities = 20/92 (21%), Positives = 30/92 (32%), Gaps = 9/92 (9%)
Query: 210 ITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKW 269
+ + L + S+ EW V MA+ E + WS+ S Y + KW
Sbjct: 8 LLSALDFLNPA--DLSYTEWCAVGMALKEEGFD----VSVWDGWSRNDSRYHKGECGRKW 61
Query: 270 DTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKG 301
+ F T T L G + G
Sbjct: 62 NGFRGNSAPVT---AGTIVQLAKERGWVPDTG 90
>gi|329938729|ref|ZP_08288125.1| hypothetical protein SGM_3617 [Streptomyces griseoaurantiacus M045]
gi|329302220|gb|EGG46112.1| hypothetical protein SGM_3617 [Streptomyces griseoaurantiacus M045]
Length = 341
Score = 47.4 bits (111), Expect = 0.009, Method: Composition-based stats.
Identities = 26/167 (15%), Positives = 43/167 (25%), Gaps = 8/167 (4%)
Query: 51 ACGFGFVCGVGEQPLYAFDIDSK---DEKTANTFKDTFEILHGTPIVRIGQKPKILIPF- 106
A G+G CG+ L D+D+K D TA + L P + P
Sbjct: 107 ATGYGIACGLPPHHLIGVDLDTKSGTDSTTALR-ELALRHLFTIPPTVVVVTPSGGRHLW 165
Query: 107 RMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLS 166
+ + +DI G G Y V + T P + P +
Sbjct: 166 LTGPPDVVVPNSASRLAPGIDIRGAGGYLVGPGSRTDHG---VYETAPGAAHLSPAPCPT 222
Query: 167 EEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAF 213
L + T + + + +
Sbjct: 223 PLLRLLLPPPRHARVGLRGTAAGTGREPGHGTGSRTGSHPDDALARA 269
>gi|8919570|emb|CAB96116.1| E1 [Cottontail rabbit papillomavirus]
Length = 602
Score = 47.4 bits (111), Expect = 0.009, Method: Composition-based stats.
Identities = 31/211 (14%), Positives = 70/211 (33%), Gaps = 36/211 (17%)
Query: 452 ITKSTGTPF-----VEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHI 506
+T S + + + + + + E + + + A L G + +
Sbjct: 374 MTMSAWINYRLDRMNDDGDWKVVVHFLR--HQRVEFIPFMVKL--KAFLRGTPKKNCMVF 429
Query: 507 RGVGGSGKSTL-MNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIIS 565
G SGKS M+LI+ G +++ L L +++ ++
Sbjct: 430 YGPPNSGKSYFCMSLIRLLAGRVLS-------------FANSRSHFWLQPLADAKLALVD 476
Query: 566 ETNEN-DEINAAKIKQMTGGDCMTARLNYGNTYSES-PASFTPFIVPNKHLFVRNPDDAW 623
+ + ++ G+ ++ L + P I N + V++ D
Sbjct: 477 DATSACWDFIDTYLRNALDGNPISVDLKHKAPIEIKCPP---LLITTN--VDVKSDDR-- 529
Query: 624 WR----RYIVIPFDKPIANRDASFAQKLETK 650
WR R V F + + R+ + +L +
Sbjct: 530 WRYLFSRICVFNFLQELPIRNGTPVYELNDE 560
>gi|126726228|ref|ZP_01742070.1| hypothetical protein RB2150_08468 [Rhodobacterales bacterium
HTCC2150]
gi|126727536|ref|ZP_01743369.1| hypothetical protein RB2150_09534 [Rhodobacterales bacterium
HTCC2150]
gi|126703126|gb|EBA02226.1| hypothetical protein RB2150_09534 [Rhodobacterales bacterium
HTCC2150]
gi|126705432|gb|EBA04523.1| hypothetical protein RB2150_08468 [Rhodobacterales bacterium
HTCC2150]
Length = 581
Score = 47.4 bits (111), Expect = 0.009, Method: Composition-based stats.
Identities = 21/125 (16%), Positives = 41/125 (32%), Gaps = 14/125 (11%)
Query: 511 GSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN 570
G+GKST+ +++ FG Q + D + + R++ ++++ E + +
Sbjct: 234 GTGKSTIGVVLEALFGAQNTAKLDGVDKLVATHND---------RVLDKKLIVAEEVHIS 284
Query: 571 DEINAAK-IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIV 629
+K + D T Y P N + RRY +
Sbjct: 285 SHSKTGNALKDLITSDRTTVNPKY-QAMKTIPLKACYLFTTNHKPL---WLEGGERRYYI 340
Query: 630 IPFDK 634
I
Sbjct: 341 IEMKH 345
>gi|330470704|ref|YP_004408447.1| bifunctional DNA primase/polymerase [Verrucosispora maris
AB-18-032]
gi|328813675|gb|AEB47847.1| bifunctional DNA primase/polymerase [Verrucosispora maris
AB-18-032]
Length = 302
Score = 47.4 bits (111), Expect = 0.009, Method: Composition-based stats.
Identities = 37/183 (20%), Positives = 55/183 (30%), Gaps = 44/183 (24%)
Query: 17 GFKLIPLRLGDKRP-----------QRLGK---------WEEQLLSS-----EKIDKLPA 51
G+ + PLR GDKRP R + WE++ + P
Sbjct: 15 GWHIFPLRPGDKRPAFPDHPADRCAGRDRRCRAAGQHVGWEDRATTDPDRIRRAWSTRPY 74
Query: 52 CGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEIL------HGTPI-----VRIGQKP 100
G G CG L D+D+ +D +L HG I V G+
Sbjct: 75 -GIGIACG--PSGLVVVDLDTPKHPAEADGRDGLAVLADLADTHGATIDPTYTVTTGRGG 131
Query: 101 KILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVE 160
L ++ G + T + +D G Y VA + Y +
Sbjct: 132 THLY-YQHPNTGPALRNTAGTVGPMVDTRAAGGYVVAAG-SIVAGRPYV---VALDCDPD 186
Query: 161 DTP 163
P
Sbjct: 187 PLP 189
>gi|21232433|ref|NP_638350.1| hypothetical protein XCC3002 [Xanthomonas campestris pv. campestris
str. ATCC 33913]
gi|21114214|gb|AAM42274.1| phage-related protein [Xanthomonas campestris pv. campestris str.
ATCC 33913]
Length = 887
Score = 47.4 bits (111), Expect = 0.010, Method: Composition-based stats.
Identities = 47/248 (18%), Positives = 83/248 (33%), Gaps = 29/248 (11%)
Query: 439 ETGQKVKPTKELYIT------KSTG------TPFVEGEPSQEFLDLVSGYFESEEVMDYF 486
G+ V +E Y + KST ++L + F + ++
Sbjct: 472 RDGEVVTANEEDYFSFKKLRLKSTQKSIRLEIQRDPEAFRMDWLPWLWQCFGTHGMVA-M 530
Query: 487 TRCVGMALLGGNK--AQRFIHI--RGVGGSGKSTLMNLIKYAFG-NQYVINAEASDIMQN 541
T G + + F + G G+GK+TL+ + G + Y A
Sbjct: 531 TFWFGSLFAEQIRAGHKSFPFLEATGEAGAGKTTLLTFLWKLLGRSDYEGFDPAKSSKAG 590
Query: 542 RPPEAGKANPSLIRLMGSRIVIISETNE--NDEINAAKIKQMTGGDCMTAR--LNYGNTY 597
R G+ + + L+ + SE ++ ++K GG + R N GN
Sbjct: 591 RARAMGQISGMPVVLLEAD---RSEPDKAHAKTFEWDELKDFFGGGTLATRGVRNGGNDT 647
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP-IANRDASFAQKLETKYTLEAK 656
E P T I N + +A R + + F +P + A L E
Sbjct: 648 YEPPFRGTIVISQN---AAVDASEAILTRIVKLHFKRPQVTTESRIAADNLNALQVEELS 704
Query: 657 KWFLKGVK 664
+ +K V+
Sbjct: 705 HFLIKAVR 712
>gi|62184576|ref|YP_220481.1| hypothetical protein pFP11.26 [Streptomyces sp. F11]
gi|61661460|gb|AAX51330.1| unknown [Streptomyces sp. F11]
Length = 301
Score = 47.4 bits (111), Expect = 0.010, Method: Composition-based stats.
Identities = 35/241 (14%), Positives = 62/241 (25%), Gaps = 20/241 (8%)
Query: 10 AKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPAC---GFGFVCGVGEQPLY 66
A + G + PL +G K P+ E E I++ G CG L
Sbjct: 5 ALRYAERGMFVHPLLVGAKEPRWTNWEERATRDPEVIERTWGRAPFNIGVACG--PSGLV 62
Query: 67 AFDIDSK-------DEKTANTFKDTFEILHGTPIVRIG-----QKPKILIPFRMNKE-GI 113
A D+D + + + TP R+ + P G+
Sbjct: 63 ALDLDVPHEGEVSGSPEIVDGVTMLDSLAARTPGARVTPTLTVRTPSGGRHLVYRAPAGV 122
Query: 114 KKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYL 173
+ T + LD G Y V Y P +
Sbjct: 123 AVRNTARTLGFCLDTRAAGGYVVGIG-SVVEGAAYVLEDGSPT-DPAVLPGWLLTLITAA 180
Query: 174 FKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVV 233
K + P D + + T +++ + + G + + +
Sbjct: 181 PKPPKAGGAPRRADVVARLRELTRQGTREQRWAAGILRSECGELAAMRQEGGRNNRLNLA 240
Query: 234 M 234
Sbjct: 241 A 241
>gi|147919193|ref|YP_687072.1| ATPase [uncultured methanogenic archaeon RC-I]
gi|110622468|emb|CAJ37746.1| putative ATPase (AAA superfamily) [uncultured methanogenic archaeon
RC-I]
Length = 292
Score = 47.4 bits (111), Expect = 0.010, Method: Composition-based stats.
Identities = 40/274 (14%), Positives = 80/274 (29%), Gaps = 61/274 (22%)
Query: 478 ESEEVMDYFTRC-VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF-----GNQYVI 531
+ E ++ +G I + G G+GK+T + ++ G+ Y
Sbjct: 21 QDEAIIRALMYLNLGYP----------IMLYGPPGNGKTT---IAEHILRYASRGDDYYR 67
Query: 532 NAEASDIMQ-----NRPPEAGKANPSLIR------------LMGSRIVIISETNENDEIN 574
+ + P + N L R L ++ ++I E
Sbjct: 68 MEATEGMTEYHTIGGFHPLSMSGNAELSRQFIYKDGIVTRALQENKNLLIDEFTRAPATA 127
Query: 575 AAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPN-KHLFVRNPDDAWWRRYIVI--- 630
+ + + + Y + P + + N A RR+I I
Sbjct: 128 YSGLFMLLSTGVLHLE--YRELTLQRPKDWVLVVTANLGDEGTFKMSAALKRRFIPIFIG 185
Query: 631 ---PFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISK-----GLDVDIPEVCLKA 682
F + S+ L+ + + + + + GL D V A
Sbjct: 186 YTSRFTE--EKIIKSYTPGLQPVLINAILDFAEETRRLWQEEKSLPQGLSTDG--VIKMA 241
Query: 683 KEEER-----QGTDTYQAWIDDCCDIGENLWEES 711
+ +G D A+ID G + +E+
Sbjct: 242 R--YCDISIEEGLDAKTAFIDSAMHQGVIIADET 273
>gi|299533251|ref|ZP_07046635.1| virulence-associated E family protein [Comamonas testosteroni S44]
gi|298718781|gb|EFI59754.1| virulence-associated E family protein [Comamonas testosteroni S44]
Length = 872
Score = 47.4 bits (111), Expect = 0.010, Method: Composition-based stats.
Identities = 44/223 (19%), Positives = 74/223 (33%), Gaps = 25/223 (11%)
Query: 445 KPTKELYITKSTG-TPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRF 503
KP + ++ G +P P E+L LV Y+ VM R + G K
Sbjct: 508 KPRLDKWLIHVLGESPETLKAPMDEYLALVGRYW----VMGMVWRV----MEPGCKFDYM 559
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVI 563
+ G GG KSTL L+ + + + ++ G +
Sbjct: 560 PVLEGKGGLRKSTLGRLLAG----------RPEWFSDTKFDLSRG-KEAYEQVRGKWLYE 608
Query: 564 ISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAW 623
I E + + + IK R+ YG+ E P N ++R+
Sbjct: 609 IQEMSSFSKADVNDIKAFVSSMVDNYRVAYGDQAQEFPRQCVLVGSTNDKKYLRDRTGN- 667
Query: 624 WRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
RR+ +P I + +K + EA + +G Y
Sbjct: 668 -RRFWPVPVRHKIK---TEWIEKWRDQLMAEAYALYQQGGVRY 706
>gi|269123583|ref|YP_003306160.1| AAA ATPase central domain-containing protein [Streptobacillus
moniliformis DSM 12112]
gi|268314909|gb|ACZ01283.1| AAA ATPase central domain protein [Streptobacillus moniliformis DSM
12112]
Length = 395
Score = 47.4 bits (111), Expect = 0.010, Method: Composition-based stats.
Identities = 24/155 (15%), Positives = 50/155 (32%), Gaps = 32/155 (20%)
Query: 505 HIRGVGGSGKSTLMNLIKYAFGNQY----VINAEASDIMQNRPPEAGKANPSLIRLMGSR 560
G G+GK+TL +I G Y I A +DI Q N
Sbjct: 46 IFFGPSGTGKTTLAKIIADKLGYDYVYLNAIKASKNDITQISLKAKNSVN--------KT 97
Query: 561 IVIISETNENDEINA-AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNP 619
++ E + +++ + ++ + G+ + ++ +
Sbjct: 98 LLFFDEIHRFNKLQQDSLLEDLENGNII------------------LIGATTENPYFS-L 138
Query: 620 DDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLE 654
+ A R ++ F K + +K+ + LE
Sbjct: 139 NRALLSRVLLFEFKKLDEEDIFNILEKIAKEEQLE 173
>gi|206561307|ref|YP_002232072.1| hypothetical protein BCAL2966 [Burkholderia cenocepacia J2315]
gi|198037349|emb|CAR53279.1| conserved hypothetical protein [Burkholderia cenocepacia J2315]
Length = 934
Score = 47.4 bits (111), Expect = 0.010, Method: Composition-based stats.
Identities = 13/69 (18%), Positives = 24/69 (34%), Gaps = 5/69 (7%)
Query: 209 EITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYK 268
+ A L+C + S + W + A+ HE G ++ WS+ Y +
Sbjct: 10 RVEAALACIPPDV---SRETWYRIAAALKHEM--GDAGFDLFDGWSRGHDGYAASDARDT 64
Query: 269 WDTFDFEEI 277
W +
Sbjct: 65 WRSLSTSGG 73
>gi|170694124|ref|ZP_02885279.1| Primase 2 [Burkholderia graminis C4D1M]
gi|170140864|gb|EDT09037.1| Primase 2 [Burkholderia graminis C4D1M]
Length = 632
Score = 47.4 bits (111), Expect = 0.010, Method: Composition-based stats.
Identities = 16/73 (21%), Positives = 24/73 (32%), Gaps = 8/73 (10%)
Query: 201 NNRQYTNREITA--FLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGS 258
NR+Y E A L+ E + W+ + A+ G I WS+
Sbjct: 1 MNRRYLTEEERARAALATIPAE----DYMTWVDMAFALKQGF--GEAGFPIWDDWSRTAH 54
Query: 259 TYDEENFNYKWDT 271
Y E W +
Sbjct: 55 NYSESAARVTWRS 67
>gi|91780506|ref|YP_555713.1| putative DNA replication primase [Burkholderia xenovorans LB400]
gi|91693166|gb|ABE36363.1| Putative DNA replication primase [Burkholderia xenovorans LB400]
Length = 644
Score = 47.4 bits (111), Expect = 0.010, Method: Composition-based stats.
Identities = 12/64 (18%), Positives = 20/64 (31%), Gaps = 6/64 (9%)
Query: 208 REITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNY 267
A L+ E + W+ + A+ G +I WS+ Y E
Sbjct: 10 ERARAALAMIPAE----DYATWVDMAFALKQGF--GEAGFDIWDEWSRTAHNYSERAARV 63
Query: 268 KWDT 271
W +
Sbjct: 64 TWRS 67
>gi|327290873|ref|XP_003230146.1| PREDICTED: LOW QUALITY PROTEIN: DNA-binding protein RFX7-like
[Anolis carolinensis]
Length = 1558
Score = 47.4 bits (111), Expect = 0.010, Method: Composition-based stats.
Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 7/95 (7%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
+WI + + + Y Y + N +S +K +K
Sbjct: 138 SWIRNTLEEHPETSLPKQEVYDEYKSYCD---NLGYHPLSAADFGKIMKN--VFPNMKAR 192
Query: 755 KIEKEWKSKRIIKGLKLKPAFESVDDNSNIIDFKR 789
++ KSK GL+ K AF + N +DF +
Sbjct: 193 RLGTRGKSKYCYSGLR-KKAFVQMPTLPN-LDFHK 225
>gi|9634291|ref|NP_037830.1| ORF70 helicase [Spodoptera exigua MNPV]
gi|2394409|gb|AAB96630.1| ORF70 helicase [Spodoptera exigua MNPV]
Length = 1222
Score = 47.4 bits (111), Expect = 0.010, Method: Composition-based stats.
Identities = 23/133 (17%), Positives = 48/133 (36%), Gaps = 12/133 (9%)
Query: 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMG 558
+ +++ G GSGKS+ + + + A+ + + +A+ + +L
Sbjct: 921 YEKCCLYLNGKPGSGKSSFFAVFDHFI--VVHKHDTANYTLTKKDTNEMEADKMISQLY- 977
Query: 559 SRIVIISETNENDEINAAKIKQMT-GGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVR 617
+I+E + + K + Y + +F IV NK L +
Sbjct: 978 ----VINEMK---VCDDSFFKSTADSTKSNSVCRKYEGSQKYE-GNFKLMIVNNKPLHIS 1029
Query: 618 NPDDAWWRRYIVI 630
+ D R+ VI
Sbjct: 1030 DYDKGVRNRFAVI 1042
>gi|2665485|gb|AAB88621.1| putative DNA helicase [Spodoptera exigua MNPV]
Length = 1222
Score = 47.4 bits (111), Expect = 0.010, Method: Composition-based stats.
Identities = 23/133 (17%), Positives = 48/133 (36%), Gaps = 12/133 (9%)
Query: 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMG 558
+ +++ G GSGKS+ + + + A+ + + +A+ + +L
Sbjct: 921 YEKCCLYLNGKPGSGKSSFFAVFDHFI--VVHKHDTANYTLTKKDTNEMEADKMISQLY- 977
Query: 559 SRIVIISETNENDEINAAKIKQMT-GGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVR 617
+I+E + + K + Y + +F IV NK L +
Sbjct: 978 ----VINEMK---VCDDSFFKSTADSTKSNSVCRKYEGSQKYE-GNFKLMIVNNKPLHIS 1029
Query: 618 NPDDAWWRRYIVI 630
+ D R+ VI
Sbjct: 1030 DYDKGVRNRFAVI 1042
>gi|327405011|ref|YP_004345849.1| AAA ATPase central domain-containing protein [Fluviicola taffensis
DSM 16823]
gi|327320519|gb|AEA45011.1| AAA ATPase central domain protein [Fluviicola taffensis DSM 16823]
Length = 295
Score = 47.4 bits (111), Expect = 0.011, Method: Composition-based stats.
Identities = 37/170 (21%), Positives = 59/170 (34%), Gaps = 18/170 (10%)
Query: 494 LLGGNKAQR-FIHIRGVGGSGKSTLMNLIKYAF-------GNQYVIN--AEASDIMQNRP 543
++G K + I + G G+GK+ I G +N +
Sbjct: 61 IIGQLKDKYPLIILAGDAGTGKTVSAEAIADRMVRELKKEGFFLKLNTRVRGEGLHGQMG 120
Query: 544 PEAGKANPSLIRLMGSRIVIISETNENDEINAAK-IKQMTGGDCMTARLNYG--NTYSES 600
A L R G R + +E D I + + QM + + E
Sbjct: 121 NLVNDAFSELKRQAGKRRIAFLLIDEADAIASTRSTMQMHQEEKAAVNTLIQKIDEIREL 180
Query: 601 PASFTPFIVPNKHLFVRNPDDAWWRR-YIVIPFDKPI-ANRDASFAQKLE 648
F+ N+ F+ D+A RR I++ F++PI R F Q LE
Sbjct: 181 NGRAVLFMSTNRLHFI---DEAIVRRAAIILEFERPIKEERIELFKQSLE 227
>gi|259129701|gb|ACV95356.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar 4,[5],12:i:-]
Length = 327
Score = 47.4 bits (111), Expect = 0.011, Method: Composition-based stats.
Identities = 34/254 (13%), Positives = 69/254 (27%), Gaps = 24/254 (9%)
Query: 511 GSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN 570
G+GK T + + G QY + + + R L +V E +
Sbjct: 66 GTGKGTTVKPLLQILG-QYAAHINGAGHISGRFNSI---------LANKLLVFADEVTIH 115
Query: 571 DEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVI 630
A ++K + + P N + R ++
Sbjct: 116 KPSEADRLKAIISEPTFNLERKGIDA-EPMPNFARLIFASN---STQVLQAGIRERRYLV 171
Query: 631 PFDKPIANRDASFAQKLET---KYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEER 687
P + + +L + W LKGV G D +EE
Sbjct: 172 LEPSPEKAQSREYFDRLYSWLNDGGAAKLLWHLKGVDL---SGFDPQRAPQTDALREEIL 228
Query: 688 QGTDTYQAWIDDCCDIGENLWEESHSLAKS----YSEYREQELNYDRKRISTRTVTLNLK 743
G + ++ E AK + + + ++ + + +L
Sbjct: 229 LGLSGVELFLYGELINEPPFNGEVRLFAKDMVSRFVAWSLERGEKLKEPAARSLLGKSLA 288
Query: 744 QKGFIGGIKREKIE 757
Q G + + ++
Sbjct: 289 QMGLVKHGRPDRGN 302
>gi|238800245|gb|ABX56067.2| E1 [Macaca fascicularis papillomavirus type 3]
Length = 627
Score = 47.0 bits (110), Expect = 0.011, Method: Composition-based stats.
Identities = 31/198 (15%), Positives = 72/198 (36%), Gaps = 32/198 (16%)
Query: 461 VEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTL-MN 519
+G + + + +++ E + + A L G + I + G +GKS M+
Sbjct: 412 DDGGDWRPIVQFLR--YQNVEFITFL--SAFKAFLKGIPKRSCIVLYGPPNTGKSYFGMS 467
Query: 520 LIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISE-TNENDEINAAKI 578
L+++ G+ ++ L L +++ ++ + T + +
Sbjct: 468 LMQFLQGSIIS-------------YVNSNSHFWLAPLAEAKVAMLDDATPQCWSYIDTYM 514
Query: 579 KQMTGGDCMTARLNYGNTYSES-PASFTPFIVPNKHLFVRNPDDAWWR----RYIVIPFD 633
+ + G+ M+ + N P I N + V D WR R +V F+
Sbjct: 515 RSVLDGNPMSIDRKHKNLIQMKCPP---LIITSNTN--VGEDDR--WRYLHSRVVVFKFE 567
Query: 634 KPIA-NRDASFAQKLETK 650
+ +++ + +L K
Sbjct: 568 QTFPFDQNGNPVYELSDK 585
>gi|297566004|ref|YP_003684976.1| Bifunctional DNA primase/polymerase [Meiothermus silvanus DSM 9946]
gi|296850453|gb|ADH63468.1| Bifunctional DNA primase/polymerase [Meiothermus silvanus DSM 9946]
Length = 1006
Score = 47.0 bits (110), Expect = 0.011, Method: Composition-based stats.
Identities = 26/150 (17%), Positives = 46/150 (30%), Gaps = 17/150 (11%)
Query: 10 AKQAIHNGFKLIPLRLGDKRP-------QRLGKWEEQLLSSEKIDKLPACGFGFVCGVGE 62
A + G+ ++PL G+KRP + + P G G +
Sbjct: 13 ALEYAGMGYPVLPLLPGEKRPHGRLVPSGLRDASTDPEVLRRWWQAAPGAGVGIL---PP 69
Query: 63 QPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIP--FRMNKEGIKKKKTTE 120
A D D A + L P R P+ + R+ + ++
Sbjct: 70 AETLALDCDVPSAWGA--LLAEYPELGEAPRQR---TPRGGVHVFLRLPAGLVGSLTSSA 124
Query: 121 STQGHLDILGCGQYFVAYNIHPKTKKEYTW 150
+D+ G G+ ++A Y W
Sbjct: 125 RKLPGVDLRGLGKAYLAAAPTTLPNGAYVW 154
>gi|90962176|ref|YP_536092.1| hypothetical protein LSL_1201 [Lactobacillus phage Sal4]
gi|90821370|gb|ABE00009.1| Hypothetical protein, phage associated [Lactobacillus phage Sal4]
gi|300214850|gb|ADJ79266.1| Putative uncharacterized protein [Lactobacillus salivarius CECT
5713]
Length = 256
Score = 47.0 bits (110), Expect = 0.011, Method: Composition-based stats.
Identities = 19/128 (14%), Positives = 44/128 (34%), Gaps = 6/128 (4%)
Query: 8 EQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPAC--GFGFVCGVGEQPL 65
Q + + G + P+ K+P + + + I + + + L
Sbjct: 5 NQVIKMVQRGLYVYPIVPNGKQPIKDYSYLKASQDIALIKRWFMDEPNINIGLNLAKSNL 64
Query: 66 YAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPF--RMNKEGIKKKKTTESTQ 123
DID+ + + + + P + + + + R NK +K + T+
Sbjct: 65 IVVDIDNHNNDLQAPLQSLSNLGYNLPSDYVERTQSGGLHYYFRSNKP-VKPTRKTKFID 123
Query: 124 GHLDILGC 131
G +D+L
Sbjct: 124 G-VDLLSD 130
>gi|288959056|ref|YP_003449397.1| hypothetical protein AZL_022150 [Azospirillum sp. B510]
gi|288911364|dbj|BAI72853.1| hypothetical protein AZL_022150 [Azospirillum sp. B510]
Length = 847
Score = 47.0 bits (110), Expect = 0.012, Method: Composition-based stats.
Identities = 29/167 (17%), Positives = 61/167 (36%), Gaps = 15/167 (8%)
Query: 178 QEITVPLVKDKKSIIPSKTWTNNNNRQYTN---REITAFLSCFGEEFYNGSHDEWIPVVM 234
+ V L ++ + ++ WT + N E+ A L+ + + +DEW+ +
Sbjct: 236 ETDAVSLRLPEREEMAAREWTQRLAHKAGNCASAELAAMLAAIPNDDMH--YDEWLSIAA 293
Query: 235 AVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKR---STFTSLF 291
V G+ + + WS + +D+ K+ + + R S + +
Sbjct: 294 KVKGAAGGAGEDAFV--EWSARSKKHDDRTARLKYRSLEGRGGEYGLFFRAVESGYDTYA 351
Query: 292 YHHGKLIPKGLLAS-RFSDAYNKAMFSIYKKGHFLYTADTKAWYKKD 337
+ K P +LA+ R A N + A+ + W+ D
Sbjct: 352 WSGAKAYPDRILANSRMKAAANANRPVLVCPAQ----AEDEDWWMPD 394
>gi|187922194|ref|YP_001893836.1| Primase 2 [Burkholderia phytofirmans PsJN]
gi|187713388|gb|ACD14612.1| Primase 2 [Burkholderia phytofirmans PsJN]
Length = 637
Score = 47.0 bits (110), Expect = 0.012, Method: Composition-based stats.
Identities = 12/64 (18%), Positives = 21/64 (32%), Gaps = 6/64 (9%)
Query: 208 REITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNY 267
A L+ +G + W+ + A+ G +I WS+ Y E
Sbjct: 10 ERARAALAMIP----SGDYATWVDMAFALKQGF--GEAGFDIWDEWSRTAHNYSERAARV 63
Query: 268 KWDT 271
W +
Sbjct: 64 TWRS 67
>gi|322514371|ref|ZP_08067419.1| bacteriophage P4 DNA primase [Actinobacillus ureae ATCC 25976]
gi|322119722|gb|EFX91766.1| bacteriophage P4 DNA primase [Actinobacillus ureae ATCC 25976]
Length = 203
Score = 47.0 bits (110), Expect = 0.012, Method: Composition-based stats.
Identities = 23/191 (12%), Positives = 64/191 (33%), Gaps = 19/191 (9%)
Query: 587 MTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFA 644
M + + + + ++ N+ RR ++ F K + RD +F
Sbjct: 1 MRVNPKHKKPF-FTKITALIILINNEPCRFTERAGGVDRRRVIFDFKKVVPESERDPTFT 59
Query: 645 QKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDC--CD 702
+K+ + + L + ++ +A E ++ +D + + +
Sbjct: 60 EKIMLEVG-GIIRKVLDTFPDSLEAKKALNTQMNSQEAL-EVKKLSDPLTDFFEHFYTTE 117
Query: 703 IGENLWEESHS---------LAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKR 753
+ L+ + + +Y Y + +N + + ++Q G +
Sbjct: 118 QIDGLFVGVANMGVDKIRTHIYPAYLAY-TRAMNISELGLGN--FVIGIEQALKQHGNQH 174
Query: 754 EKIEKEWKSKR 764
+ ++K K+ R
Sbjct: 175 DFMKKHTKTGR 185
>gi|254453838|ref|ZP_05067275.1| hypothetical protein OA238_4461 [Octadecabacter antarcticus 238]
gi|198268244|gb|EDY92514.1| hypothetical protein OA238_4461 [Octadecabacter antarcticus 238]
Length = 312
Score = 47.0 bits (110), Expect = 0.013, Method: Composition-based stats.
Identities = 21/127 (16%), Positives = 46/127 (36%), Gaps = 14/127 (11%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVI 563
+RG G GK T ++ + G+ V + + + + +R++I
Sbjct: 44 PVLRGAHGIGKGTFQHMARALIGSGGVSVVQGIEGVAGQFGGENAL---------ARLLI 94
Query: 564 ISE-TNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDA 622
+ E +++D++ A K + D + ++ + T + F A
Sbjct: 95 VDEVWSKSDKLMEA-FKPIVSDDFIGVERKGEMRFTTRSVADTLVFSNHGKPF---KSAA 150
Query: 623 WWRRYIV 629
RR+ V
Sbjct: 151 TERRWWV 157
>gi|261326266|emb|CBH09092.1| hypothetical protein, conserved [Trypanosoma brucei gambiense DAL972]
Length = 1249
Score = 47.0 bits (110), Expect = 0.013, Method: Composition-based stats.
Identities = 15/61 (24%), Positives = 22/61 (36%), Gaps = 3/61 (4%)
Query: 214 LSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGS-TYDEENFNYKWDTF 272
L +D W+ V +A+H+ E R+S + Y E KW F
Sbjct: 1165 LHRLPPRAAEC-YDIWVRVGLALHN-FSNEDHVFEEWVRFSLKCPQKYSRETCRRKWQQF 1222
Query: 273 D 273
D
Sbjct: 1223 D 1223
>gi|115504605|ref|XP_001219095.1| hypothetical protein [Trypanosoma brucei TREU927]
gi|83642577|emb|CAJ16608.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
Length = 1249
Score = 47.0 bits (110), Expect = 0.013, Method: Composition-based stats.
Identities = 15/61 (24%), Positives = 22/61 (36%), Gaps = 3/61 (4%)
Query: 214 LSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGS-TYDEENFNYKWDTF 272
L +D W+ V +A+H+ E R+S + Y E KW F
Sbjct: 1165 LHRLPPRAAEC-YDIWVRVGLALHN-FSNEDHVFEEWVRFSLKCPQKYSRETCRRKWQQF 1222
Query: 273 D 273
D
Sbjct: 1223 D 1223
>gi|332843882|ref|XP_510432.3| PREDICTED: DNA-binding protein RFX7 isoform 2 [Pan troglodytes]
Length = 1460
Score = 47.0 bits (110), Expect = 0.014, Method: Composition-based stats.
Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 7/95 (7%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
+WI + + + Y Y + N +S +K +K
Sbjct: 110 SWIRNTLEEHPETSLPKQEVYDEYKSYCD---NLGYHPLSAADFGKIMKN--VFPNMKAR 164
Query: 755 KIEKEWKSKRIIKGLKLKPAFESVDDNSNIIDFKR 789
++ KSK GL+ K AF + N +DF +
Sbjct: 165 RLGTRGKSKYCYSGLR-KKAFVHMPTLPN-LDFHK 197
>gi|332235632|ref|XP_003267010.1| PREDICTED: DNA-binding protein RFX7 [Nomascus leucogenys]
Length = 1363
Score = 47.0 bits (110), Expect = 0.014, Method: Composition-based stats.
Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 7/95 (7%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
+WI + + + Y Y + N +S +K +K
Sbjct: 13 SWIRNTLEEHPETSLPKQEVYDEYKSYCD---NLGYHPLSAADFGKIMKN--VFPNMKAR 67
Query: 755 KIEKEWKSKRIIKGLKLKPAFESVDDNSNIIDFKR 789
++ KSK GL+ K AF + N +DF +
Sbjct: 68 RLGTRGKSKYCYSGLR-KKAFVHMPTLPN-LDFHK 100
>gi|326926581|ref|XP_003209477.1| PREDICTED: DNA-binding protein RFX7-like [Meleagris gallopavo]
Length = 1401
Score = 47.0 bits (110), Expect = 0.014, Method: Composition-based stats.
Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 7/95 (7%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
+WI + + + Y Y + N +S +K +K
Sbjct: 123 SWIRNTLEEHPETSLPKQEVYDEYKSYCD---NLGYHPLSAADFGKIMKN--VFPNMKAR 177
Query: 755 KIEKEWKSKRIIKGLKLKPAFESVDDNSNIIDFKR 789
++ KSK GL+ K AF + N +DF +
Sbjct: 178 RLGTRGKSKYCYSGLR-KKAFVHMPTLPN-LDFHK 210
>gi|297696718|ref|XP_002825529.1| PREDICTED: DNA-binding protein RFX7-like [Pongo abelii]
Length = 1363
Score = 47.0 bits (110), Expect = 0.014, Method: Composition-based stats.
Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 7/95 (7%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
+WI + + + Y Y + N +S +K +K
Sbjct: 13 SWIRNTLEEHPETSLPKQEVYDEYKSYCD---NLGYHPLSAADFGKIMKN--VFPNMKAR 67
Query: 755 KIEKEWKSKRIIKGLKLKPAFESVDDNSNIIDFKR 789
++ KSK GL+ K AF + N +DF +
Sbjct: 68 RLGTRGKSKYCYSGLR-KKAFVHMPTLPN-LDFHK 100
>gi|297296511|ref|XP_001090581.2| PREDICTED: DNA-binding protein RFX7 isoform 2 [Macaca mulatta]
Length = 1459
Score = 47.0 bits (110), Expect = 0.014, Method: Composition-based stats.
Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 7/95 (7%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
+WI + + + Y Y + N +S +K +K
Sbjct: 110 SWIRNTLEEHPETSLPKQEVYDEYKSYCD---NLGYHPLSAADFGKIMKN--VFPNMKAR 164
Query: 755 KIEKEWKSKRIIKGLKLKPAFESVDDNSNIIDFKR 789
++ KSK GL+ K AF + N +DF +
Sbjct: 165 RLGTRGKSKYCYSGLR-KKAFVHMPTLPN-LDFHK 197
>gi|291402954|ref|XP_002717768.1| PREDICTED: regulatory factor X domain containing 2 [Oryctolagus
cuniculus]
Length = 1461
Score = 47.0 bits (110), Expect = 0.014, Method: Composition-based stats.
Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 7/95 (7%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
+WI + + + Y Y + N +S +K +K
Sbjct: 110 SWIRNTLEEHPETSLPKQEVYDEYKSYCD---NLGYHPLSAADFGKIMKN--VFPNMKAR 164
Query: 755 KIEKEWKSKRIIKGLKLKPAFESVDDNSNIIDFKR 789
++ KSK GL+ K AF + N +DF +
Sbjct: 165 RLGTRGKSKYCYSGLR-KKAFVHMPTLPN-LDFHK 197
>gi|219521445|gb|AAI43439.1| RFX7 protein [Homo sapiens]
Length = 1292
Score = 47.0 bits (110), Expect = 0.014, Method: Composition-based stats.
Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 7/95 (7%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
+WI + + + Y Y + N +S +K +K
Sbjct: 29 SWIRNTLEEHPETSLPKQEVYDEYKSYCD---NLGYHPLSAADFGKIMKN--VFPNMKAR 83
Query: 755 KIEKEWKSKRIIKGLKLKPAFESVDDNSNIIDFKR 789
++ KSK GL+ K AF + N +DF +
Sbjct: 84 RLGTRGKSKYCYSGLR-KKAFVHMPTLPN-LDFHK 116
>gi|300796622|ref|NP_001179749.1| DNA-binding protein RFX7 [Bos taurus]
gi|297479654|ref|XP_002690932.1| PREDICTED: regulatory factor X, 7 [Bos taurus]
gi|296483180|gb|DAA25295.1| regulatory factor X, 7 [Bos taurus]
Length = 1461
Score = 47.0 bits (110), Expect = 0.014, Method: Composition-based stats.
Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 7/95 (7%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
+WI + + + Y Y + N +S +K +K
Sbjct: 110 SWIRNTLEEHPETSLPKQEVYDEYKSYCD---NLGYHPLSAADFGKIMKN--VFPNMKAR 164
Query: 755 KIEKEWKSKRIIKGLKLKPAFESVDDNSNIIDFKR 789
++ KSK GL+ K AF + N +DF +
Sbjct: 165 RLGTRGKSKYCYSGLR-KKAFVHMPTLPN-LDFHK 197
>gi|148613886|ref|NP_073752.5| DNA-binding protein RFX7 [Homo sapiens]
Length = 1460
Score = 47.0 bits (110), Expect = 0.014, Method: Composition-based stats.
Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 7/95 (7%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
+WI + + + Y Y + N +S +K +K
Sbjct: 110 SWIRNTLEEHPETSLPKQEVYDEYKSYCD---NLGYHPLSAADFGKIMKN--VFPNMKAR 164
Query: 755 KIEKEWKSKRIIKGLKLKPAFESVDDNSNIIDFKR 789
++ KSK GL+ K AF + N +DF +
Sbjct: 165 RLGTRGKSKYCYSGLR-KKAFVHMPTLPN-LDFHK 197
>gi|149691918|ref|XP_001500788.1| PREDICTED: regulatory factor X domain containing 2 [Equus caballus]
Length = 1459
Score = 47.0 bits (110), Expect = 0.014, Method: Composition-based stats.
Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 7/95 (7%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
+WI + + + Y Y + N +S +K +K
Sbjct: 110 SWIRNTLEEHPETSLPKQEVYDEYKSYCD---NLGYHPLSAADFGKIMKN--VFPNMKAR 164
Query: 755 KIEKEWKSKRIIKGLKLKPAFESVDDNSNIIDFKR 789
++ KSK GL+ K AF + N +DF +
Sbjct: 165 RLGTRGKSKYCYSGLR-KKAFVHMPTLPN-LDFHK 197
>gi|149636722|ref|XP_001514248.1| PREDICTED: similar to regulatory factor X domain containing 2
homolog [Ornithorhynchus anatinus]
Length = 1500
Score = 47.0 bits (110), Expect = 0.014, Method: Composition-based stats.
Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 7/95 (7%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
+WI + + + Y Y + N +S +K +K
Sbjct: 139 SWIRNTLEEHPETSLPKQEVYDEYKSYCD---NLGYHPLSAADFGKIMKN--VFPNMKAR 193
Query: 755 KIEKEWKSKRIIKGLKLKPAFESVDDNSNIIDFKR 789
++ KSK GL+ K AF + N +DF +
Sbjct: 194 RLGTRGKSKYCYSGLR-KKAFVHMPTLPN-LDFHK 226
>gi|149028792|gb|EDL84133.1| similar to hypothetical protein FLJ12994 (predicted), isoform CRA_a
[Rattus norvegicus]
Length = 1378
Score = 47.0 bits (110), Expect = 0.014, Method: Composition-based stats.
Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 7/95 (7%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
+WI + + + Y Y + N +S +K +K
Sbjct: 110 SWIRNTLEEHPETSLPKQEVYDEYKSYCD---NLGYHPLSAADFGKIMKN--VFPNMKAR 164
Query: 755 KIEKEWKSKRIIKGLKLKPAFESVDDNSNIIDFKR 789
++ KSK GL+ K AF + N +DF +
Sbjct: 165 RLGTRGKSKYCYSGLR-KKAFVHMPTLPN-LDFHK 197
>gi|149028793|gb|EDL84134.1| similar to hypothetical protein FLJ12994 (predicted), isoform CRA_b
[Rattus norvegicus]
gi|165970890|gb|AAI58677.1| Rfx7 protein [Rattus norvegicus]
Length = 297
Score = 47.0 bits (110), Expect = 0.014, Method: Composition-based stats.
Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 7/95 (7%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
+WI + + + Y Y + N +S +K +K
Sbjct: 110 SWIRNTLEEHPETSLPKQEVYDEYKSYCD---NLGYHPLSAADFGKIMKN--VFPNMKAR 164
Query: 755 KIEKEWKSKRIIKGLKLKPAFESVDDNSNIIDFKR 789
++ KSK GL+ K AF + N +DF +
Sbjct: 165 RLGTRGKSKYCYSGLR-KKAFVHMPTLPN-LDFHK 197
>gi|148694315|gb|EDL26262.1| mCG131701, isoform CRA_a [Mus musculus]
Length = 1378
Score = 47.0 bits (110), Expect = 0.014, Method: Composition-based stats.
Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 7/95 (7%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
+WI + + + Y Y + N +S +K +K
Sbjct: 110 SWIRNTLEEHPETSLPKQEVYDEYKSYCD---NLGYHPLSAADFGKIMKN--VFPNMKAR 164
Query: 755 KIEKEWKSKRIIKGLKLKPAFESVDDNSNIIDFKR 789
++ KSK GL+ K AF + N +DF +
Sbjct: 165 RLGTRGKSKYCYSGLR-KKAFVHMPTLPN-LDFHK 197
>gi|126277186|ref|XP_001368345.1| PREDICTED: similar to regulatory factor X domain containing 2
homolog [Monodelphis domestica]
Length = 1455
Score = 47.0 bits (110), Expect = 0.014, Method: Composition-based stats.
Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 7/95 (7%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
+WI + + + Y Y + N +S +K +K
Sbjct: 110 SWIRNTLEEHPETSLPKQEVYDEYKSYCD---NLGYHPLSAADFGKIMKN--VFPNMKAR 164
Query: 755 KIEKEWKSKRIIKGLKLKPAFESVDDNSNIIDFKR 789
++ KSK GL+ K AF + N +DF +
Sbjct: 165 RLGTRGKSKYCYSGLR-KKAFVHMPTLPN-LDFHK 197
>gi|118095718|ref|XP_429081.2| PREDICTED: similar to regulatory factor X domain containing 2
homolog [Gallus gallus]
Length = 1537
Score = 47.0 bits (110), Expect = 0.014, Method: Composition-based stats.
Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 7/95 (7%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
+WI + + + Y Y + N +S +K +K
Sbjct: 178 SWIRNTLEEHPETSLPKQEVYDEYKSYCD---NLGYHPLSAADFGKIMKN--VFPNMKAR 232
Query: 755 KIEKEWKSKRIIKGLKLKPAFESVDDNSNIIDFKR 789
++ KSK GL+ K AF + N +DF +
Sbjct: 233 RLGTRGKSKYCYSGLR-KKAFVHMPTLPN-LDFHK 265
>gi|114657201|ref|XP_001171418.1| PREDICTED: hypothetical protein isoform 1 [Pan troglodytes]
Length = 1281
Score = 47.0 bits (110), Expect = 0.014, Method: Composition-based stats.
Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 7/95 (7%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
+WI + + + Y Y + N +S +K +K
Sbjct: 13 SWIRNTLEEHPETSLPKQEVYDEYKSYCD---NLGYHPLSAADFGKIMKN--VFPNMKAR 67
Query: 755 KIEKEWKSKRIIKGLKLKPAFESVDDNSNIIDFKR 789
++ KSK GL+ K AF + N +DF +
Sbjct: 68 RLGTRGKSKYCYSGLR-KKAFVHMPTLPN-LDFHK 100
>gi|109081239|ref|XP_001090465.1| PREDICTED: DNA-binding protein RFX7 isoform 1 [Macaca mulatta]
Length = 1280
Score = 47.0 bits (110), Expect = 0.014, Method: Composition-based stats.
Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 7/95 (7%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
+WI + + + Y Y + N +S +K +K
Sbjct: 13 SWIRNTLEEHPETSLPKQEVYDEYKSYCD---NLGYHPLSAADFGKIMKN--VFPNMKAR 67
Query: 755 KIEKEWKSKRIIKGLKLKPAFESVDDNSNIIDFKR 789
++ KSK GL+ K AF + N +DF +
Sbjct: 68 RLGTRGKSKYCYSGLR-KKAFVHMPTLPN-LDFHK 100
>gi|74213029|dbj|BAE41660.1| unnamed protein product [Mus musculus]
gi|148694316|gb|EDL26263.1| mCG131701, isoform CRA_b [Mus musculus]
Length = 291
Score = 47.0 bits (110), Expect = 0.014, Method: Composition-based stats.
Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 7/95 (7%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
+WI + + + Y Y + N +S +K +K
Sbjct: 110 SWIRNTLEEHPETSLPKQEVYDEYKSYCD---NLGYHPLSAADFGKIMKN--VFPNMKAR 164
Query: 755 KIEKEWKSKRIIKGLKLKPAFESVDDNSNIIDFKR 789
++ KSK GL+ K AF + N +DF +
Sbjct: 165 RLGTRGKSKYCYSGLR-KKAFVHMPTLPN-LDFHK 197
>gi|88703055|ref|NP_001028708.1| regulatory factor X domain containing 2 [Mus musculus]
gi|162319108|gb|AAI56262.1| Regulatory factor X, 7 [synthetic construct]
Length = 1459
Score = 47.0 bits (110), Expect = 0.014, Method: Composition-based stats.
Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 7/95 (7%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
+WI + + + Y Y + N +S +K +K
Sbjct: 110 SWIRNTLEEHPETSLPKQEVYDEYKSYCD---NLGYHPLSAADFGKIMKN--VFPNMKAR 164
Query: 755 KIEKEWKSKRIIKGLKLKPAFESVDDNSNIIDFKR 789
++ KSK GL+ K AF + N +DF +
Sbjct: 165 RLGTRGKSKYCYSGLR-KKAFVHMPTLPN-LDFHK 197
>gi|34535225|dbj|BAC87248.1| unnamed protein product [Homo sapiens]
Length = 1281
Score = 47.0 bits (110), Expect = 0.014, Method: Composition-based stats.
Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 7/95 (7%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
+WI + + + Y Y + N +S +K +K
Sbjct: 13 SWIRNTLEEHPETSLPKQEVYDEYKSYCD---NLGYHPLSAADFGKIMKN--VFPNMKAR 67
Query: 755 KIEKEWKSKRIIKGLKLKPAFESVDDNSNIIDFKR 789
++ KSK GL+ K AF + N +DF +
Sbjct: 68 RLGTRGKSKYCYSGLR-KKAFVHMPTLPN-LDFHK 100
>gi|188595675|ref|NP_001120962.1| regulatory factor X domain containing 2 [Rattus norvegicus]
Length = 1459
Score = 47.0 bits (110), Expect = 0.014, Method: Composition-based stats.
Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 7/95 (7%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
+WI + + + Y Y + N +S +K +K
Sbjct: 110 SWIRNTLEEHPETSLPKQEVYDEYKSYCD---NLGYHPLSAADFGKIMKN--VFPNMKAR 164
Query: 755 KIEKEWKSKRIIKGLKLKPAFESVDDNSNIIDFKR 789
++ KSK GL+ K AF + N +DF +
Sbjct: 165 RLGTRGKSKYCYSGLR-KKAFVHMPTLPN-LDFHK 197
>gi|121946796|sp|Q2KHR2|RFX7_HUMAN RecName: Full=DNA-binding protein RFX7; AltName: Full=Regulatory
factor X 7; AltName: Full=Regulatory factor X
domain-containing protein 2
gi|86577734|gb|AAI12937.1| Regulatory factor X, 7 [Homo sapiens]
Length = 1363
Score = 47.0 bits (110), Expect = 0.014, Method: Composition-based stats.
Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 7/95 (7%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
+WI + + + Y Y + N +S +K +K
Sbjct: 13 SWIRNTLEEHPETSLPKQEVYDEYKSYCD---NLGYHPLSAADFGKIMKN--VFPNMKAR 67
Query: 755 KIEKEWKSKRIIKGLKLKPAFESVDDNSNIIDFKR 789
++ KSK GL+ K AF + N +DF +
Sbjct: 68 RLGTRGKSKYCYSGLR-KKAFVHMPTLPN-LDFHK 100
>gi|74189197|dbj|BAC41187.2| unnamed protein product [Mus musculus]
Length = 309
Score = 47.0 bits (110), Expect = 0.014, Method: Composition-based stats.
Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 7/95 (7%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
+WI + + + Y Y + N +S +K +K
Sbjct: 110 SWIRNTLEEHPETSLPKQEVYDEYKSYCD---NLGYHPLSAADFGKIMKN--VFPNMKAR 164
Query: 755 KIEKEWKSKRIIKGLKLKPAFESVDDNSNIIDFKR 789
++ KSK GL+ K AF + N +DF +
Sbjct: 165 RLGTRGKSKYCYSGLR-KKAFVHMPTLPN-LDFHK 197
>gi|225405819|ref|ZP_03761008.1| hypothetical protein CLOSTASPAR_05040 [Clostridium asparagiforme
DSM 15981]
gi|225042659|gb|EEG52905.1| hypothetical protein CLOSTASPAR_05040 [Clostridium asparagiforme
DSM 15981]
Length = 302
Score = 47.0 bits (110), Expect = 0.014, Method: Composition-based stats.
Identities = 32/210 (15%), Positives = 65/210 (30%), Gaps = 29/210 (13%)
Query: 482 VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQN 541
+ V A++GG K G G GKST + ++ +++ +
Sbjct: 10 MRKSLCAAVARAVVGGVKYDYMPIFTGPQGIGKSTFLRILGG------AWFSDSLTTFEG 63
Query: 542 RPPEAGKANPSLIRLMGSRIVI-ISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600
+ L+ + I E + IKQ R YG
Sbjct: 64 K---------EAAELIQGTWINEIGELSAFTRQETQIIKQFLSKLEDIYRAAYGRRTERY 114
Query: 601 PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDA--SFAQKLETKYTLEAKKW 658
P F N F+++ RR+ + A + ++++ + W
Sbjct: 115 PRRCVFFGTSNDSEFLKDATGN--RRFWPVDVGVHPAEKSVWEDLPKEVDQIWAEAYLYW 172
Query: 659 FLKGVKAYISKGLDVDIPEVCLKAKEEERQ 688
L G + +P+ + +E+++
Sbjct: 173 TL---------GEKLFLPKELEELAQEQQE 193
>gi|169334191|ref|ZP_02861384.1| hypothetical protein ANASTE_00589 [Anaerofustis stercorihominis DSM
17244]
gi|169258908|gb|EDS72874.1| hypothetical protein ANASTE_00589 [Anaerofustis stercorihominis DSM
17244]
Length = 410
Score = 47.0 bits (110), Expect = 0.014, Method: Composition-based stats.
Identities = 48/364 (13%), Positives = 118/364 (32%), Gaps = 51/364 (14%)
Query: 63 QPLYAFDID--SKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120
L A D+D +D K ++ +D G + I L +G K T
Sbjct: 72 GKLIAIDLDHCIEDGKLSSLAED-ITSHFGNTYIEISPSGTGLRIILFVADGYVYDKDTY 130
Query: 121 STQ-GHLDIL---GCGQYFVAYN-------IHPKTKKEYTWTTPPHRFKVEDTPLLSEED 169
+ G +++ ++ I T W + + P +++ +
Sbjct: 131 HIKKGDIEVYVAGATNRFVTITGDVYLKNEIAENTDGL-QWLIDTYMKR--KVPTVNDLN 187
Query: 170 VEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEW 229
E F + V K ++ + N + N +I+ + S +
Sbjct: 188 FENRPSFLSD---ESVIAKATVSKQR----NKFQNLWNGDISDYPSQSEAD--------- 231
Query: 230 IPVVMAVHHETRGSSKGKE-IARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAK-KRSTF 287
+ +V + G+ + + + R + S +DE + + + ++ K S
Sbjct: 232 LGLVSILSFYCNGNKEQIDRLFRESALFRSKWDEMHGSKTYGEITIDKALSGMKNFYSPI 291
Query: 288 TSLFYHHG---------KLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDK 338
L P+ + ++D +F+ + + Y + K+W+ +
Sbjct: 292 VPAPASEDFDDEMNRLIALNPEDITKYPWTDIGAGMLFADFYENCLRYVPERKSWFYYEN 351
Query: 339 NNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFW--FNTDYRRQNV 396
IW + + M +++ + + + D +K + + + R N+
Sbjct: 352 G---IWKQDVGGL--KAMKLCMNLANLLHMYALKITDEHKRKSYMDYSKRWQSHGCRINI 406
Query: 397 EENS 400
+++
Sbjct: 407 LKDA 410
>gi|83310618|ref|YP_420882.1| hypothetical protein amb1519 [Magnetospirillum magneticum AMB-1]
gi|82945459|dbj|BAE50323.1| hypothetical protein [Magnetospirillum magneticum AMB-1]
Length = 512
Score = 47.0 bits (110), Expect = 0.014, Method: Composition-based stats.
Identities = 55/356 (15%), Positives = 110/356 (30%), Gaps = 39/356 (10%)
Query: 430 GEQDGILDLETGQKVKPTK--ELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFT 487
G DG +L G ++P E Y P + L V+G + + +
Sbjct: 122 GAPDGWYNLWRGFTIEPAPATEDYRHHCRQFP----TLTDHVLSNVAG--GDKALAKWIW 175
Query: 488 RCVGMALLGGN-KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEA 546
+ + + +RG GSGKS L + + G Y + + ++ N
Sbjct: 176 AWFAHMIQRPIERIGVALVLRGRQGSGKSALGDAVGMLLGPHYTLIDDPRHLVGNFN--- 232
Query: 547 GKANPSLIRLMGSRIVIISETN-ENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFT 605
L + E D+ A +++ + + +
Sbjct: 233 -------AHLASCLFLQADEAVWAGDKGAAGRLRSLITSSRTLQERKNIDA-EQVRNLVR 284
Query: 606 PFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKA 665
+ + V + RR+ VI +D ++ L ++ L+ +
Sbjct: 285 LLMTSEEDWVVPASKE--ERRFAVID-IGTGRMQDRAYFTALFSELKNGGLPHLLRFLMD 341
Query: 666 YISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE--------NLWEESHSLAKS 717
+ + + ++ E++ DT W +C G S L S
Sbjct: 342 FPLEEVSLNQLPRTEALFEQKAANFDTETEWWYNCLQQGAILSGHRKWAHEVPSAGLYAS 401
Query: 718 YSEYREQELNYDRKRISTRTVTLNLKQK-----GFIGGIKREKIEKEWKSKRIIKG 768
Y + E+ R+ S + + L+Q GF G + +++ I G
Sbjct: 402 YLSFAERTK--ARRPFSNARLGIKLRQLIPLEYGFKPGKIKVEVDDVLPDGSRIPG 455
>gi|162135108|ref|YP_001595849.1| hypothetical protein [Pseudomonas phage YuA]
gi|161513955|emb|CAO77781.1| hypothetical protein [Pseudomonas phage YuA]
Length = 803
Score = 46.6 bits (109), Expect = 0.015, Method: Composition-based stats.
Identities = 40/268 (14%), Positives = 95/268 (35%), Gaps = 30/268 (11%)
Query: 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSR 560
+ + +RG G+GKS ++ FG Y+ +++ ++ + L +
Sbjct: 489 EVAVVLRGRRGTGKSFFAKVLGAMFGRHYLQVSDSKHLVGSFN----------AHLRDTV 538
Query: 561 IVIISET-NENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVR-N 618
++ E D+ + + +K + + + + +P + N+ V
Sbjct: 539 LLFGDEAFFAGDKKHESVLKTLVTEEHLVIEGKGVDA-EAAPNYVHLVLASNEDWVVPAG 597
Query: 619 PDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEV 678
D+ RR+ V+ + +D ++ ++++ + L + Y +V
Sbjct: 598 LDE---RRFFVMEVGEG-HKQDHAYFKRIKDDLDNGGLEHLLHFLLTYDLSNYEVRQVPQ 653
Query: 679 CLKAKEEERQGTDTYQAWIDDCCDIGENLWEES--------HSLAKSY-SEYREQELNYD 729
++++ W+ + G L + SL Y ++ R+Q N+
Sbjct: 654 TRALQDQKIMSMSPETQWMYEKLWEGRLLKTDQDWRNKVVKDSLYDDYVNDLRDQGRNF- 712
Query: 730 RKRISTRTVTLNLKQKGFIGGIKREKIE 757
R+S L + F G + K E
Sbjct: 713 --RMSRTGFGKFLS-RAFPDGWPQSKQE 737
>gi|304382849|ref|ZP_07365332.1| hypothetical protein HMPREF0658_0786 [Prevotella marshii DSM 16973]
gi|304336034|gb|EFM02281.1| hypothetical protein HMPREF0658_0786 [Prevotella marshii DSM 16973]
Length = 269
Score = 46.6 bits (109), Expect = 0.015, Method: Composition-based stats.
Identities = 40/266 (15%), Positives = 91/266 (34%), Gaps = 31/266 (11%)
Query: 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMG 558
+ + + G G K+T ++L+ + + ++ L+G
Sbjct: 14 RNHTCLVLTGEQGKFKTTFLDLLC-----------PPALSDYQYTGKIYPQEKDVLSLIG 62
Query: 559 SRIVIISE--TNENDEINAAKIKQMTGGDCMTARLNYGNTYSESP--ASFTPFIVPNKHL 614
++I + ++ + ++K + + R+ Y E P ASF + N L
Sbjct: 63 QNLIINIDDQLKALNKRDENELKNLITCPQVKYRMPYEKHIVERPHLASFVASVNGNDFL 122
Query: 615 FVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD 674
RR+ +PF+ + D + ++ Y EAK G + + + D +
Sbjct: 123 TDPTGS----RRF--LPFEVLAIDIDRAKTIPMDAVYG-EAKALLKDGFRYWFN---DEE 172
Query: 675 IPEVCL--KAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKR 732
I E+ +A + + + + + SE Y R++
Sbjct: 173 IAELHRNSEAFQVYTAEMELLLR----HFTFPTEAEKATKRFYMTNSEIVGYLSVYTRQQ 228
Query: 733 ISTRTVTLNLKQKGFIGGIKREKIEK 758
+S + + L++ G+ +R
Sbjct: 229 LSPKRMGEALRKVGYARECRRVNGNP 254
>gi|281419623|ref|ZP_06250630.1| Bifunctional DNA primase/polymerase [Clostridium thermocellum JW20]
gi|281406730|gb|EFB37001.1| Bifunctional DNA primase/polymerase [Clostridium thermocellum JW20]
Length = 268
Score = 46.6 bits (109), Expect = 0.015, Method: Composition-based stats.
Identities = 30/185 (16%), Positives = 48/185 (25%), Gaps = 29/185 (15%)
Query: 4 MQWKEQAKQAIHNGFKLIPLR-----------------LGDKRPQRLGKWEEQLLSSEKI 46
+ + A + +IPL K P G + E+I
Sbjct: 3 VTMMDAALKYAEANIPVIPLHWICEGGLCSCKAGKNCDSKGKHPLYTGWYNNSTTDVEQI 62
Query: 47 DKL----PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKI 102
K P G G L D+D ++T + + T L T G
Sbjct: 63 KKWWTKTPNANIGIPTGAKSGWLV-LDVDDGGDETLSALEATHGKLPDTVTAVTGG---G 118
Query: 103 LIPFRMNKEGIKKKKTTESTQGHLDILGCGQ-YFVAYNIHPKTKKEYTWTT--PPHRFKV 159
+ + + D G VA +IH + Y W +
Sbjct: 119 GLHYIFKYPKGRSIPNKTKFAPGFDNHSTGGLIVVAPSIHVSDNQ-YQWLKGHSSFDKTL 177
Query: 160 EDTPL 164
+ P
Sbjct: 178 AEAPE 182
>gi|107027183|ref|YP_624694.1| hypothetical protein Bcen_4842 [Burkholderia cenocepacia AU 1054]
gi|105896557|gb|ABF79721.1| conserved hypothetical protein [Burkholderia cenocepacia AU 1054]
Length = 615
Score = 46.6 bits (109), Expect = 0.015, Method: Composition-based stats.
Identities = 11/65 (16%), Positives = 21/65 (32%), Gaps = 6/65 (9%)
Query: 207 NREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFN 266
+ L+ + + W+ + AV H G E+ WS+ D +
Sbjct: 9 ADRVRTALATIPAD----DYTTWVDMAFAVKHGL--GEAGFELWDAWSQTAPNCDARSAR 62
Query: 267 YKWDT 271
W +
Sbjct: 63 ATWRS 67
>gi|296214091|ref|XP_002807241.1| PREDICTED: LOW QUALITY PROTEIN: DNA-binding protein RFX7-like
[Callithrix jacchus]
Length = 1444
Score = 46.6 bits (109), Expect = 0.016, Method: Composition-based stats.
Identities = 19/95 (20%), Positives = 32/95 (33%), Gaps = 7/95 (7%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
+WI + + Y Y + N +S +K +K
Sbjct: 110 SWIRSTLEEHPETSLPKQEVYDEYKSYCD---NLGYHPLSAADFGKIMKN--VFPNMKAR 164
Query: 755 KIEKEWKSKRIIKGLKLKPAFESVDDNSNIIDFKR 789
++ KSK GL+ K AF + N +DF +
Sbjct: 165 RLGTRGKSKYCYSGLR-KKAFVHMPTLPN-LDFHK 197
>gi|290769632|gb|ADD61413.1| putative protein [uncultured organism]
Length = 415
Score = 46.6 bits (109), Expect = 0.016, Method: Composition-based stats.
Identities = 31/175 (17%), Positives = 58/175 (33%), Gaps = 25/175 (14%)
Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542
MDY L K + + +GKST +N +K F + V D
Sbjct: 124 MDYLQLLY---LKPTQKLPILLLVSEERNTGKSTFLNFLKALF-QENVTFNTNEDFRSQF 179
Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602
G ++++ E N ++ ++K ++ + Y
Sbjct: 180 N----------ADWAGKLMIVVDEVLLNRREDSERLKNLSTAHSYKMEAKGKDRYEV--Q 227
Query: 603 SFTPFIVP----NKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTL 653
F F++ N +++ + +W R I + D SF QKL+ +
Sbjct: 228 FFAKFVLCSNNENFPVYIEPEETRYWVRKI-----SRLGKDDTSFLQKLQDEIPA 277
>gi|313150074|ref|ZP_07812267.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
gi|313138842|gb|EFR56201.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12]
Length = 396
Score = 46.6 bits (109), Expect = 0.017, Method: Composition-based stats.
Identities = 33/190 (17%), Positives = 64/190 (33%), Gaps = 31/190 (16%)
Query: 472 LVSGYFESE-EV-MDYFTRCVGMALLGGNKAQRFIHIR---GVGGSGKSTLMNLIKYAFG 526
LV F + E+ MDY + Q+ + +GKST +N +K F
Sbjct: 94 LVRHIFGEQYELGMDYLQLLY------LHPVQKLPILLLVSEERNTGKSTFLNFLKALF- 146
Query: 527 NQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM--TGG 584
+ + + N G ++++ E N ++ ++K + T
Sbjct: 147 -------QNNVTFNTNEDFRSQFNSDWA---GKLLILVDEVLLNRREDSERLKNLSTTLS 196
Query: 585 DCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDD-AWWRRYIVIPFDKPIANRDASF 643
M A+ + + A F + + + +W R I + + D F
Sbjct: 197 YKMEAKGKDRDEIAFF-AKFVLCSNNEYLPVIIDAGETRYWVRKI-----DRLQSDDTDF 250
Query: 644 AQKLETKYTL 653
QKL+ +
Sbjct: 251 LQKLKAEIPA 260
>gi|260893044|ref|YP_003239141.1| Bifunctional DNA primase/polymerase [Ammonifex degensii KC4]
gi|260865185|gb|ACX52291.1| Bifunctional DNA primase/polymerase [Ammonifex degensii KC4]
Length = 283
Score = 46.6 bits (109), Expect = 0.017, Method: Composition-based stats.
Identities = 30/178 (16%), Positives = 55/178 (30%), Gaps = 31/178 (17%)
Query: 9 QAKQAIHNGFKLIPLRL---------------GDKRP----QRLGKWEEQLLSSEKIDKL 49
A++ G+ ++PL K P ++ + +
Sbjct: 11 YAERF---GWAVLPLHSIAGGRCTCGRVNCPSPGKHPLTQHGVKEASKDSETIAAWWRRW 67
Query: 50 PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTP--IVRIGQKPKILIPFR 107
P G G +D + ++ + + P + +I + FR
Sbjct: 68 PWANIGVATGSISGFFV---LDVDGPEGEDSLYELVKRHGELPETVEQITGSGGRHLLFR 124
Query: 108 MNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTW--TTPPHRFKVEDTP 163
M EG G LD+ G G Y VA + + Y W ++ P +V + P
Sbjct: 125 MP-EGRAIGNKVRLAPG-LDVRGEGGYVVAAPSLHASGRRYEWEFSSRPGEVEVAEAP 180
>gi|300116738|ref|YP_003773384.1| primase/DNA polymerase [Hyperthermophilic Archaeal Virus 2]
gi|299820253|gb|ADJ54264.1| primase/DNA polymerase [Hyperthermophilic Archaeal Virus 2]
Length = 909
Score = 46.6 bits (109), Expect = 0.018, Method: Composition-based stats.
Identities = 51/293 (17%), Positives = 92/293 (31%), Gaps = 63/293 (21%)
Query: 10 AKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYA-- 67
A + GF +IP+ G K Q +S ++++KL G G ++
Sbjct: 6 ALRLYDLGFNIIPVDKGKK--PLTSWSTRQRISRDELEKLLEKASGIGIAGGAVNPWSPV 63
Query: 68 -----FDIDSKD--EKTA--NTFKDTFEILHGTPIV-RIGQKPKILI----PFRMNKEGI 113
D+D+ D EK A ++ P R G K ++ FR + G
Sbjct: 64 AMLAIIDVDNPDVLEKHAELKRIVESTVSWKTGPRCPRCGNKHLDVLNPGHTFRCDSCGA 123
Query: 114 -----------------KKKKTTESTQG-----HLDILGCGQYFVAYNIHPKTKKEYTWT 151
+ +G ++IL + + HP + +Y W
Sbjct: 124 EFTIEEAKRGIGALVSLDVDTAEKYIRGTVRGRDVEILVNNYALIPPSTHP-SGVQYEWI 182
Query: 152 TPPHRFKVEDTPL--LSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNRE 209
P FK + + L E ++ L + + P V+ + + R+ + +
Sbjct: 183 R-PFDFKAPNLGIRALVESELASLLEEL-GVLKPHVEQPAEGGIGEKLPGSQLRELADSD 240
Query: 210 ITAFLSCFGEEFYNGSHD-EWI-----------------PVVMAVHHETRGSS 244
I A E + G W+ V+ +H ET
Sbjct: 241 IIAIKELLKEAYRPGVRQYVWLFLSGWAAKAGISPVSIAKVLKMLHDETGDED 293
Score = 45.9 bits (107), Expect = 0.030, Method: Composition-based stats.
Identities = 39/196 (19%), Positives = 69/196 (35%), Gaps = 26/196 (13%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAF-----GNQYVINAEASDIMQNRPPEAGKANPSLIRLMG 558
+++ G +GK+TL + G + A + + P
Sbjct: 575 LYLYGSSKTGKTTLAEIATVYLWRLDPGKHHKTGASMDTPARLGHVLSQSTFP------- 627
Query: 559 SRIVIISETNENDEINAAKIKQM-TGGDCMTARLNY-GNTYSESPASFTPFIVPNKHLFV 616
V ISE + ++ + + +TAR Y Y++ PA NK++
Sbjct: 628 ---VAISEPA-GALDKSDIVEIIKASVEGLTARGKYHRGAYTDIPALAPLVFTSNKYVP- 682
Query: 617 RNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKG---VKAYISKGLDV 673
DD RR+ V+ F A + E+K E KK G ++ G+
Sbjct: 683 --RDDTLLRRFKVLHFTYG-ERVPEELATEFESKVKPELKKLKAIGDYTASYFLKNGIGE 739
Query: 674 DIPEVCLKAKE-EERQ 688
D+ + ++A E R
Sbjct: 740 DLEKQGIEALEAAYRS 755
>gi|237642071|ref|YP_002887625.1| nonstructural protein NS-1 [Culex pipiens densovirus]
gi|229554367|gb|ACQ76570.1| nonstructural protein NS-1 [Culex pipiens densovirus]
Length = 548
Score = 46.6 bits (109), Expect = 0.018, Method: Composition-based stats.
Identities = 32/201 (15%), Positives = 63/201 (31%), Gaps = 19/201 (9%)
Query: 447 TKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHI 506
Y T ++FL + +++E + F + L Q +
Sbjct: 351 DPIFYAGMEYATQEESFAILEDFLKF--QFEDNDEKITQFLVDLIDVLDKRVPKQNAFAV 408
Query: 507 RGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKAN-PSLIRLMGSRIVIIS 565
SGK+ ++I + + +A + N + R+++ +
Sbjct: 409 ISPPSSGKNFFFDMIMAIC------------LNYGQLGQANRHNLFAFQEAPNKRLLLWN 456
Query: 566 ETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625
E N + IK M GGD T R+ Y + + N F+ + A+
Sbjct: 457 EPN-YESAMTDTIKMMMGGDPYTVRVKYQGDTH-VTRTPVLILTNNYVSFL--QESAFKD 512
Query: 626 RYIVIPFDKPIANRDASFAQK 646
R V + + +D
Sbjct: 513 RIKVYKWREAPFLKDVHVKPY 533
>gi|293371872|ref|ZP_06618276.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f]
gi|292633118|gb|EFF51695.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f]
Length = 415
Score = 46.6 bits (109), Expect = 0.019, Method: Composition-based stats.
Identities = 31/175 (17%), Positives = 58/175 (33%), Gaps = 25/175 (14%)
Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542
MDY L K + + +GKST +N +K F + V D
Sbjct: 124 MDYLQLLY---LKPTQKLPILLLVSEERNTGKSTFLNFLKALF-QENVTFNTNEDFRSQF 179
Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602
G ++++ E N ++ ++K ++ + Y
Sbjct: 180 N----------ADWAGKLMIVVDEVLLNRREDSERLKNLSTAHSYKMEAKGKDRYEV--Q 227
Query: 603 SFTPFIVP----NKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTL 653
F F++ N +++ + +W R I + D SF QKL+ +
Sbjct: 228 FFAKFVLCSNNENFPVYIEPEETRYWVRKI-----SRLGKDDTSFLQKLQDEIPA 277
>gi|241677072|ref|XP_002411545.1| hypothetical protein IscW_ISCW011327 [Ixodes scapularis]
gi|215504245|gb|EEC13739.1| hypothetical protein IscW_ISCW011327 [Ixodes scapularis]
Length = 457
Score = 46.3 bits (108), Expect = 0.019, Method: Composition-based stats.
Identities = 22/111 (19%), Positives = 39/111 (35%), Gaps = 4/111 (3%)
Query: 524 AFGNQYV-INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK--IKQ 580
FG + + S+ ++ + A R VI SE D + KQ
Sbjct: 1 MFGKDNLLVRHLLSNFFTSKSDQRMDATFR-YNAEEVRFVIESEMPILDMDEGGRRKFKQ 59
Query: 581 MTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIP 631
TGGD + R Y ++ + N ++ A +R +++P
Sbjct: 60 YTGGDTVANRQPYDRCNNDFILTSKFLTASNDLPYIPLHMSAEQKRIMIVP 110
>gi|167620889|ref|ZP_02389520.1| DNA primase [Burkholderia thailandensis Bt4]
Length = 205
Score = 46.3 bits (108), Expect = 0.019, Method: Composition-based stats.
Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 2/49 (4%)
Query: 224 GSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTF 272
D W MA+ E +G + W + +Y+ ++ W +F
Sbjct: 17 DDRDTWRQAGMALKAEF--GEEGFALWNEWGQGAQSYNAKDARDVWKSF 63
>gi|71658847|ref|YP_271915.1| non-structural protein 1 [Penaeus merguiensis densovirus]
gi|67973119|gb|AAY84084.1| non-structural protein 1 [Penaeus merguiensis densovirus]
Length = 579
Score = 46.3 bits (108), Expect = 0.019, Method: Composition-based stats.
Identities = 29/166 (17%), Positives = 54/166 (32%), Gaps = 26/166 (15%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVI 563
+ + G SGK+ L+ + + IM N ++ + S IV+
Sbjct: 395 MMLYGNSNSGKTQLIEALTGLI---------NTAIMTNVGDGGTFHFSNITEM--STIVV 443
Query: 564 ISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPN-KHL--FVRNPD 620
+ET + + K + GG+ +T + Y ++ P + N H + N D
Sbjct: 444 GNETKIRTQTIE-QWKGLCGGENITMPMKYKEH--KTHMFRKPVFLTNQHHPLVEISNYD 500
Query: 621 D--AWWRRYIVIP-------FDKPIANRDASFAQKLETKYTLEAKK 657
D A R + + I + K + T
Sbjct: 501 DRKAIENRCFMYKVELGSEAVNAHIKFPNRMIPIKKNPELTQFILA 546
>gi|186474874|ref|YP_001856344.1| ATPase central domain-containing protein [Burkholderia phymatum
STM815]
gi|184191333|gb|ACC69298.1| AAA ATPase central domain protein [Burkholderia phymatum STM815]
Length = 325
Score = 46.3 bits (108), Expect = 0.020, Method: Composition-based stats.
Identities = 37/214 (17%), Positives = 71/214 (33%), Gaps = 28/214 (13%)
Query: 461 VEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIR-GVGGSGKSTLMN 519
V+ DL+ E +D + V + L ++ + + G G GK+
Sbjct: 56 VKPNRMPSIDDLIGSLPNFTEPLDDIRKQVALCLETDDRLELMPILLLGDPGIGKTHFAK 115
Query: 520 LIKYAFGNQYVINAEASDI---------MQNRPPEAGKANPSLIRLMGSRIVII-SETNE 569
+ G Y A +S Q + + GK +L+ + VI E ++
Sbjct: 116 QLARMLGTAYHYVAMSSLTAGWILSGASSQWKNAKPGKVFDALVHGSYANPVIAVDEIDK 175
Query: 570 NDEINA----AKIKQMTGGDCMTARLNYGNTYSESP--ASFTPFIVP-NKHLFVRNPDDA 622
+ + + D + + + ++E P AS +I N + +
Sbjct: 176 ATGDSQYDPLGALYALLEHDTAQS---FIDEFAEIPINASHVIWIATANDERSIP---EP 229
Query: 623 WWRRYIVIPFDKPIANRD--ASFAQKLETKYTLE 654
R V F+ P +RD AQ + +
Sbjct: 230 IMNRMNV--FEIPPPDRDGSRRIAQSIYDEIRSA 261
>gi|113195484|ref|YP_717621.1| helicase/P143 [Clanis bilineata nucleopolyhedrosis virus]
gi|94959025|gb|ABF47425.1| helicase/P143 [Clanis bilineata nucleopolyhedrosis virus]
Length = 1241
Score = 46.3 bits (108), Expect = 0.021, Method: Composition-based stats.
Identities = 26/145 (17%), Positives = 54/145 (37%), Gaps = 12/145 (8%)
Query: 495 LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLI 554
+ + + +++ G GSGKS+ L++ + + + + + +AN +
Sbjct: 938 IPSDYEKCCVYLNGEPGSGKSSNFELMEQIV--VVHKHDAENYTLSRKETDEMEANKLIS 995
Query: 555 RLMGSRIVIISETNENDEINAAKIKQMTGGDCMTA-RLNYGNTYSESPASFTPFIVPNKH 613
+L +I+E E N + K A Y + ++ IV NK
Sbjct: 996 QLY-----VINEMKE---CNDSFFKSTADSTKSNAVCRKYQGSQKYE-GNYKLMIVNNKP 1046
Query: 614 LFVRNPDDAWWRRYIVIPFDKPIAN 638
L++ N D R+ ++ D
Sbjct: 1047 LYISNYDKGVRNRFAIVYTDHVFEE 1071
>gi|92113485|ref|YP_573413.1| phage-like protein [Chromohalobacter salexigens DSM 3043]
gi|91796575|gb|ABE58714.1| conserved hypothetical phage-related protein [Chromohalobacter
salexigens DSM 3043]
Length = 888
Score = 46.3 bits (108), Expect = 0.021, Method: Composition-based stats.
Identities = 45/239 (18%), Positives = 76/239 (31%), Gaps = 31/239 (12%)
Query: 444 VKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQR- 502
K K L + S + + G F ++ V+ G L Q
Sbjct: 492 RKHLKTLSQSVILHLNPDRDAYSTAWTRQLLGAFGAKGVV-----ATGYWLGSLLAEQIR 546
Query: 503 -------FIHIRGVGGSGKSTLMNLIKYAFG-NQYVINAEASDIMQNRPPEAGKANPSLI 554
F+ I G G+GKSTL+ + G Y + M R + +
Sbjct: 547 AAQGSFPFLEIVGEAGAGKSTLIEFLWKLVGRRDYEGFDPSKATMPARSRNFAQVANLPV 606
Query: 555 RLMGSRIVIISETNEND-----EINAAKIKQMTGGDCMTARLNY--GNTYSESPASFTPF 607
++I S+ ++ D + + ++K G + AR GN E P +
Sbjct: 607 ------VLIESDRDQGDGAKQKQFDWDELKTAFNGRSIRARGVKSSGNETYEPPFRGSIV 660
Query: 608 IVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD-ASFAQKLETKYTLEAKKWFLKGVKA 665
I N + +A R + F + R A+ LE ++ L K
Sbjct: 661 ISQNAPVQ---AGEAIQTRICHLHFTREGQTRQTKELAEALEKAELEHVSQFALDVAKR 716
>gi|85057871|ref|YP_456787.1| cell division protein ftsH-like protein [Aster yellows
witches'-broom phytoplasma AYWB]
gi|123725332|sp|Q2NIN5|FTSH_AYWBP RecName: Full=ATP-dependent zinc metalloprotease FtsH
gi|84789976|gb|ABC65708.1| cell division protein ftsH homolog [Aster yellows witches'-broom
phytoplasma AYWB]
Length = 676
Score = 46.3 bits (108), Expect = 0.021, Method: Composition-based stats.
Identities = 38/207 (18%), Positives = 62/207 (29%), Gaps = 27/207 (13%)
Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540
E++D+ A +G + + + + G G+GK+ L + G + A SD +
Sbjct: 186 ELIDFLKNPRKYAAMGA-RIPKGVLLYGPPGTGKTLLAKAVAGEAGVPF-FAASGSDFDE 243
Query: 541 NRPPEAGKANPSL---IRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
L +L IV I E + I + G T
Sbjct: 244 VYVGVGASRVRDLFKEAQLAAPCIVFIDEIEAVARKRGSNIGG-SNGSEQTLNQLLVEMD 302
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWR--RYIVIPFDKPI-------ANRDASFA---- 644
+ I V D A R R FD+ +R+A
Sbjct: 303 GFNQKMGVIVIAATNQPEV--LDSAILRPGR-----FDRHFNITLPNVKDREAILKLHAS 355
Query: 645 -QKLETKYTLEAKKWFLKGVKAYISKG 670
+KL + +LE G +G
Sbjct: 356 NKKLSEEISLEELAKQTPGFSGAQLEG 382
>gi|255012234|ref|ZP_05284360.1| hypothetical protein Bfra3_24042 [Bacteroides fragilis 3_1_12]
Length = 413
Score = 46.3 bits (108), Expect = 0.021, Method: Composition-based stats.
Identities = 33/190 (17%), Positives = 64/190 (33%), Gaps = 31/190 (16%)
Query: 472 LVSGYFESE-EV-MDYFTRCVGMALLGGNKAQRFIHIR---GVGGSGKSTLMNLIKYAFG 526
LV F + E+ MDY + Q+ + +GKST +N +K F
Sbjct: 111 LVRHIFGEQYELGMDYLQLLY------LHPVQKLPILLLVSEERNTGKSTFLNFLKALF- 163
Query: 527 NQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM--TGG 584
+ + + N G ++++ E N ++ ++K + T
Sbjct: 164 -------QNNVTFNTNEDFRSQFNSDWA---GKLLILVDEVLLNRREDSERLKNLSTTLS 213
Query: 585 DCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDD-AWWRRYIVIPFDKPIANRDASF 643
M A+ + + A F + + + +W R I + + D F
Sbjct: 214 YKMEAKGKDRDEIAFF-AKFVLCSNNEYLPVIIDAGETRYWVRKI-----DRLQSDDTDF 267
Query: 644 AQKLETKYTL 653
QKL+ +
Sbjct: 268 LQKLKAEIPA 277
>gi|123381289|ref|XP_001298554.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121879154|gb|EAX85624.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 211
Score = 46.3 bits (108), Expect = 0.021, Method: Composition-based stats.
Identities = 38/209 (18%), Positives = 67/209 (32%), Gaps = 19/209 (9%)
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGN 595
M N GK N S+ + +++ +E D +N+ +K + Y +
Sbjct: 1 MTNLENICGKFNSSIENMK---LIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKD 57
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
+ + N D RRY+V+ +D + L T E
Sbjct: 58 QRVCENVANFIMVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTPEF 113
Query: 656 KKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
+ IP + E + Y+ +ID+ + + SL
Sbjct: 114 YNHLFSYFMTLDISKFNPRQIPHTEERQTLLEANKS-VYELFIDETDFVSLDER----SL 168
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLK 743
SY +Y ++ Y S RT N+K
Sbjct: 169 YDSYKQYCQE---YGYMAASKRTFLANVK 194
>gi|260893832|ref|YP_003239929.1| Bifunctional DNA primase/polymerase [Ammonifex degensii KC4]
gi|260865973|gb|ACX53079.1| Bifunctional DNA primase/polymerase [Ammonifex degensii KC4]
Length = 283
Score = 46.3 bits (108), Expect = 0.022, Method: Composition-based stats.
Identities = 25/146 (17%), Positives = 45/146 (30%), Gaps = 9/146 (6%)
Query: 22 PLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTF 81
P + R ++ + + P G G +D + ++
Sbjct: 40 PGKHPLTRHGVKEASKDSEAIAAWWRRWPWANIGIATGKASGFFV---LDVDGPEGEDSL 96
Query: 82 KDTFEILHGTP--IVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYN 139
+ P + +I + FRM EG G LD+ G G Y VA
Sbjct: 97 YELVRRHGELPETVEQITGSGGRHLLFRMP-EGRAIGNKVRLAPG-LDVRGEGGYIVAAP 154
Query: 140 IHPKTKKEYTW--TTPPHRFKVEDTP 163
+ Y W ++ P ++ + P
Sbjct: 155 SIHAGGRRYEWEFSSRPGEVQIAEAP 180
>gi|8919749|emb|CAB96164.1| e1 [Cottontail rabbit papillomavirus]
Length = 602
Score = 46.3 bits (108), Expect = 0.022, Method: Composition-based stats.
Identities = 32/201 (15%), Positives = 66/201 (32%), Gaps = 38/201 (18%)
Query: 452 ITKSTGTPF-----VEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHI 506
+T S + + + + + + E + + + A L G + +
Sbjct: 374 MTMSAWINYRLDGMNDDGDWKVVVHFLR--HQRVEFIPFMVKL--KAFLRGTPKKNCMVF 429
Query: 507 RGVGGSGKSTL-MNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIIS 565
G SGKS M+LI+ G +++ L L +++ ++
Sbjct: 430 YGPPNSGKSYFCMSLIRLLAGRVLS-------------FANSRSHFWLQPLADAKLALVD 476
Query: 566 ETNEN-DEINAAKIKQMTGGDCMTARLNYGNTYSES-PASFTPFIVPNKHLFVRNPDDAW 623
+ + ++ G+ ++ L + P I N + V++ D
Sbjct: 477 DATSACWDFIDTYLRNALDGNPISVDLKHKAPIEIKCPP---LLITTN--VDVKSDDR-- 529
Query: 624 WR----RYIVIPF--DKPIAN 638
WR R V F + PI N
Sbjct: 530 WRYLFSRICVFNFLQELPIRN 550
>gi|13186224|ref|NP_077108.1| E1 [Cottontail rabbit papillomavirus]
gi|137640|sp|P03112|VE1_CRPVK RecName: Full=Replication protein E1; AltName: Full=ATP-dependent
helicase E1
Length = 602
Score = 46.3 bits (108), Expect = 0.022, Method: Composition-based stats.
Identities = 32/201 (15%), Positives = 66/201 (32%), Gaps = 38/201 (18%)
Query: 452 ITKSTGTPF-----VEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHI 506
+T S + + + + + + E + + + A L G + +
Sbjct: 374 MTMSAWINYRLDGMNDDGDWKVVVHFLR--HQRVEFIPFMVKL--KAFLRGTPKKNCMVF 429
Query: 507 RGVGGSGKSTL-MNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIIS 565
G SGKS M+LI+ G +++ L L +++ ++
Sbjct: 430 YGPPNSGKSYFCMSLIRLLAGRVLS-------------FANSRSHFWLQPLADAKLALVD 476
Query: 566 ETNEN-DEINAAKIKQMTGGDCMTARLNYGNTYSES-PASFTPFIVPNKHLFVRNPDDAW 623
+ + ++ G+ ++ L + P I N + V++ D
Sbjct: 477 DATSACWDFIDTYLRNALDGNPISVDLKHKAPIEIKCPP---LLITTN--VDVKSDDR-- 529
Query: 624 WR----RYIVIPF--DKPIAN 638
WR R V F + PI N
Sbjct: 530 WRYLFSRICVFNFLQELPIRN 550
>gi|39938616|ref|NP_950382.1| ATP-dependent Zn protease [Onion yellows phytoplasma OY-M]
gi|39721725|dbj|BAD04215.1| ATP-dependent Zn protease [Onion yellows phytoplasma OY-M]
Length = 674
Score = 46.3 bits (108), Expect = 0.023, Method: Composition-based stats.
Identities = 37/207 (17%), Positives = 61/207 (29%), Gaps = 27/207 (13%)
Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540
E++D+ A +G + + + + G G+GK+ L + G + A SD +
Sbjct: 186 ELIDFLKNPRKYAAMGA-RIPKGVLLYGPPGTGKTLLAKAVAGEAGVPF-FAASGSDFDE 243
Query: 541 NRPPEAGKANPSL---IRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597
L +L IV I E + I + G T
Sbjct: 244 VYVGVGASRVRDLFKEAQLAAPCIVFIDEIEAVARKRGSNIGG-SNGSEQTLNQLLVEMD 302
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWR--RYIVIPFDKPI-------ANRDASFA---- 644
+ I D A R R FD+ +R+A
Sbjct: 303 GFNQKMGVIVIAATNLPE--ALDSAILRPGR-----FDRHFNITLPNVKDREAILKLHAS 355
Query: 645 -QKLETKYTLEAKKWFLKGVKAYISKG 670
+KL + +LE G +G
Sbjct: 356 NKKLSEEISLEELAKQTPGFSGAQLEG 382
>gi|75909302|ref|YP_323598.1| virulence-associated E [Anabaena variabilis ATCC 29413]
gi|75703027|gb|ABA22703.1| Virulence-associated E [Anabaena variabilis ATCC 29413]
Length = 662
Score = 46.3 bits (108), Expect = 0.023, Method: Composition-based stats.
Identities = 35/211 (16%), Positives = 65/211 (30%), Gaps = 34/211 (16%)
Query: 482 VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQN 541
+ + VG A+ G KA + ++G G GK+T N +
Sbjct: 384 IRRWLIAAVGRAMTPGCKADCALVLQGKQGIGKTTFFN-----------------SLFGE 426
Query: 542 RPPEAGKANPSLIRLMGSRIVIISETNE----NDEINAAKIKQMTGGDCMTARLNYGNTY 597
G+ + +L+ E E + IK R Y
Sbjct: 427 FFQTLGEHKSDVDQLLSMARSWCIEWGEIENAFSRKAVSAIKSFMSTTHDVYRRPYAAEP 486
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKK 657
P F N+ F+ + RR+ V+ + I D + +++ K
Sbjct: 487 DNYPRHFIICGTTNQSEFLTDSTGN--RRFWVVNAENRI---DTAAVKEMRDDVWSAVLK 541
Query: 658 WFLKGVKAYISKGLDVDIPEVCLKA--KEEE 686
+L G +++++ EV A +
Sbjct: 542 LYLDGEPSFLNE------TEVVESAEDTSQY 566
>gi|296135617|ref|YP_003642859.1| Primase 2 [Thiomonas intermedia K12]
gi|295795739|gb|ADG30529.1| Primase 2 [Thiomonas intermedia K12]
Length = 751
Score = 46.3 bits (108), Expect = 0.023, Method: Composition-based stats.
Identities = 17/102 (16%), Positives = 26/102 (25%), Gaps = 8/102 (7%)
Query: 206 TNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYD-EEN 264
A L + ++W MA E WS G Y ++
Sbjct: 6 DTERARAALQAIPPDL---PREDWTRAGMAAKAA----GLALEDFTDWSANGGNYAGPKD 58
Query: 265 FNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASR 306
W +F + IG F+ + K R
Sbjct: 59 CASVWQSFKGDGIGPGTLFHLAFSHGWKDTRKQRQPSQATQR 100
>gi|187939544|gb|ACD38692.1| hypothetical phage protein [Pseudomonas aeruginosa]
Length = 894
Score = 46.3 bits (108), Expect = 0.023, Method: Composition-based stats.
Identities = 41/211 (19%), Positives = 76/211 (36%), Gaps = 20/211 (9%)
Query: 467 QEFLDLVSGYFESEEVMDYFTRCVGMALLGGNK--AQRFIHI--RGVGGSGKSTLMNLIK 522
E+LD + F ++ ++ G + Q F + G G+GKSTL+ +
Sbjct: 514 PEWLDWLWTCFGAKGLVA-LAFWFGSLFAEQIRAEFQSFPFLEATGEAGAGKSTLITFLW 572
Query: 523 YAFG--NQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEND---EINAAK 577
G ++ + R +N ++ L R S+ N + +
Sbjct: 573 KLLGRADEEGQDPSKMTKAGLRRWLTQLSNMPMVLLEADR----SDNNRGTAAKAFDWDE 628
Query: 578 IKQMTGGDC--MTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP 635
K + G +T + GN E P T I N + +A R + + F +P
Sbjct: 629 FKPLFNGRSLGVTGQKTAGNETYEPPFRGTLVISQNATVV---ASEAIMTRIVKLHFSRP 685
Query: 636 IANRDASFAQKLETKYT-LEAKKWFLKGVKA 665
R++ A + LE + L+ ++A
Sbjct: 686 EITRESQAAADNLNHLSVLEVSHFLLQAIRA 716
>gi|314935714|ref|ZP_07843066.1| prophage ps3 protein 11 [Staphylococcus hominis subsp. hominis C80]
gi|313656279|gb|EFS20019.1| prophage ps3 protein 11 [Staphylococcus hominis subsp. hominis C80]
Length = 290
Score = 45.9 bits (107), Expect = 0.025, Method: Composition-based stats.
Identities = 23/149 (15%), Positives = 49/149 (32%), Gaps = 15/149 (10%)
Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569
G SGK M + V ++ +A + G+ I +ET E
Sbjct: 27 GRSGKGLFMETFEKLL---NVNKVNFDSLLS----SGFEAANEWLNFYGADIAHANETGE 79
Query: 570 NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIV 629
++ ++++ G+ ++ R N + + N+ + + + R
Sbjct: 80 INKGMMRILRKIATGENISGRGIQRNNVKFK-NNAVLILDTNESV---DTGEITANRTR- 134
Query: 630 IPFDKPIANRDASFAQKLETKYTLEAKKW 658
IA +D + E +Y + W
Sbjct: 135 ---TVKIAFKDRPKNETDEERYKVFKPYW 160
>gi|171742604|ref|ZP_02918411.1| hypothetical protein BIFDEN_01717 [Bifidobacterium dentium ATCC
27678]
gi|171278218|gb|EDT45879.1| hypothetical protein BIFDEN_01717 [Bifidobacterium dentium ATCC
27678]
Length = 942
Score = 45.9 bits (107), Expect = 0.026, Method: Composition-based stats.
Identities = 27/155 (17%), Positives = 50/155 (32%), Gaps = 10/155 (6%)
Query: 478 ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
S + M C G ++ + + + G GG+GKS + + +G A
Sbjct: 274 GSADAMRNLMLCWGAPIMSSHPEK-LYWLSGQGGTGKSQMSAALVRLYG---GTTASVEL 329
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEIN--AAKIKQMTGGDCMTARLNYGN 595
+ P + A + L + + + E + A TG + R +
Sbjct: 330 LA---KPGSMSAENLMYNLQKANVGLFDEVGVKHFDDYWPAVKTLCTGLLPFSPRRRGED 386
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVI 630
++ TP N + A RR +I
Sbjct: 387 ASADLGCRVTPIFTANVLPPL-GQSSADQRRACII 420
>gi|149003119|ref|ZP_01828028.1| DNA primase [Streptococcus pneumoniae SP14-BS69]
gi|147758860|gb|EDK65856.1| DNA primase [Streptococcus pneumoniae SP14-BS69]
Length = 173
Score = 45.9 bits (107), Expect = 0.026, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 26/78 (33%), Gaps = 3/78 (3%)
Query: 622 AWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLD-VDIPEVCL 680
W+RR +IPF + K E +W L K D PE
Sbjct: 2 GWYRRLCIIPFRADFNGQKERHEIKDRFIKNKELLEWVL--FKVLNMPDFDSFIEPEAVQ 59
Query: 681 KAKEEERQGTDTYQAWID 698
K + + D + W++
Sbjct: 60 KMLSKYKNDNDYIKVWVE 77
>gi|332983388|ref|YP_004464829.1| bifunctional DNA primase/polymerase [Mahella australiensis 50-1
BON]
gi|332701066|gb|AEE98007.1| Bifunctional DNA primase/polymerase [Mahella australiensis 50-1
BON]
Length = 271
Score = 45.9 bits (107), Expect = 0.026, Method: Composition-based stats.
Identities = 27/176 (15%), Positives = 52/176 (29%), Gaps = 28/176 (15%)
Query: 9 QAKQAIHNGFKLIPL---------------RLGDKRP----QRLGKWEEQLLSSEKIDKL 49
AK+ G+ +IPL + K P + L+ + +K
Sbjct: 11 YAKRL---GWMIIPLNNIEDGRCSCGNPHCQSPGKHPLTQHGMKNATADILVIARWWEKW 67
Query: 50 PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMN 109
P G +C ++ D+D++ ++ P + F
Sbjct: 68 PNANIGLIC--RANGIFVLDVDAR-HGGIDSLYQLIAEYGELPYTVVCNSGGGGAHFYFK 124
Query: 110 KEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTW--TTPPHRFKVEDTP 163
+ + LDI G + + H + K Y W + P + + P
Sbjct: 125 YPVNIVITDKQGFKSGLDIRSNGYILLPPSDH-ISGKSYMWRKSCTPFSTPIAEAP 179
>gi|283456314|ref|YP_003360878.1| bifunctional DNA primase/polymerase [Bifidobacterium dentium Bd1]
gi|283102948|gb|ADB10054.1| bifunctional DNA primase/polymerase [Bifidobacterium dentium Bd1]
Length = 942
Score = 45.9 bits (107), Expect = 0.026, Method: Composition-based stats.
Identities = 27/155 (17%), Positives = 50/155 (32%), Gaps = 10/155 (6%)
Query: 478 ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
S + M C G ++ + + + G GG+GKS + + +G A
Sbjct: 274 GSADAMRNLMLCWGAPIMSSHPEK-LYWLSGQGGTGKSQMSAALVRLYG---GTTASVEL 329
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEIN--AAKIKQMTGGDCMTARLNYGN 595
+ P + A + L + + + E + A TG + R +
Sbjct: 330 LA---KPGSMSAENLMYNLQKANVGLFDEVGVKHFDDYWPAVKTLCTGLLPFSPRRRGED 386
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVI 630
++ TP N + A RR +I
Sbjct: 387 ASADLGCRVTPIFTANVLPPL-GQSSADQRRACII 420
>gi|83311028|ref|YP_421292.1| hypothetical protein amb1929 [Magnetospirillum magneticum AMB-1]
gi|82945869|dbj|BAE50733.1| hypothetical protein [Magnetospirillum magneticum AMB-1]
Length = 469
Score = 45.9 bits (107), Expect = 0.027, Method: Composition-based stats.
Identities = 37/237 (15%), Positives = 55/237 (23%), Gaps = 35/237 (14%)
Query: 8 EQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVC-----GVGE 62
+ A GFK+ PL+ K P G + + I + GV
Sbjct: 9 DHALALAAKGFKVFPLQPNGKLPIWEGWPDRATTDAATIRGWWSDPLTGGSKPYNVGVCT 68
Query: 63 QPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEG---------- 112
L D D+K K + + + GTP + P
Sbjct: 69 SGLLVTDPDAKGGKPGLVNWEINDAIFGTPDHPVTITPTGGQHHFFKLPAGINPETVGNI 128
Query: 113 IKKKKTTESTQGHLDILG-CGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVE 171
K +D G FV Y W S D+
Sbjct: 129 ADSAKRESPLGKGIDARSWHG--FVVGAGSVIDGVPYRWQ----------AEAASVADLP 176
Query: 172 YLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITA---FLSCFGEEFYNGS 225
+ + K + P T T + +L E G
Sbjct: 177 DAPDWIID----KCKRQVVERPDTAETPEGLTLDTPAALHRATWYLQHEAPEAVEGD 229
>gi|4574723|gb|AAD24183.1|AF131950_3 putative replication protein E1 [Human papillomavirus - cand85]
Length = 648
Score = 45.9 bits (107), Expect = 0.027, Method: Composition-based stats.
Identities = 25/180 (13%), Positives = 53/180 (29%), Gaps = 23/180 (12%)
Query: 461 VEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTL-MN 519
+G + + + F+ E + + L G + I I G +GKS M+
Sbjct: 430 DDGGDWKPIVQFLR--FQGIEFITFLRAF--KDFLKGTPKKNCIVIYGPANTGKSYFCMS 485
Query: 520 LIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN-DEINAAKI 578
LI++ G ++ L L ++I ++ + +
Sbjct: 486 LIQFLHGTVLS-------------FVNSNSHFWLEPLTDTKIAMVDDATPTCWSYFDNYM 532
Query: 579 KQMTGGDCMTARLNYGNTYSES-PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637
+ G+ ++ + + P I N + + R V F
Sbjct: 533 RNALDGNPISIDRKHKHLIQMKCPPM---LITSNTNPATDDRWPYLRSRVTVFTFPHTFP 589
>gi|84517218|ref|ZP_01004573.1| hypothetical protein SKA53_00225 [Loktanella vestfoldensis SKA53]
gi|84508893|gb|EAQ05355.1| hypothetical protein SKA53_00225 [Loktanella vestfoldensis SKA53]
Length = 260
Score = 45.9 bits (107), Expect = 0.027, Method: Composition-based stats.
Identities = 28/153 (18%), Positives = 51/153 (33%), Gaps = 11/153 (7%)
Query: 17 GFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAF---DIDSK 73
G+++ P K+P + I++L + + P+ D+D K
Sbjct: 18 GYRVFPSN-QQKKPCVKDPFGRATNDKAGIEELFGNFPNAMTAIPTGPINGVTVVDLDVK 76
Query: 74 DEKTANTFKDTFEILHGTPIVRIGQKPKILIP--FRMNKEGIKKKKTTESTQGHLDILGC 131
N + ++ P + + P I FR EG+ + G +DI G
Sbjct: 77 --GGVNGIETLRGLIDDLPPTMLVRTPSGGIHLYFRTGSEGL-PSSVGKLGPG-IDIRGS 132
Query: 132 GQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPL 164
G +++ K Y W F P+
Sbjct: 133 GANAISFG-STSQKGMYRWDHSVSGFTWRPAPM 164
>gi|292655942|ref|YP_003535839.1| hypothetical protein HVO_1802 [Haloferax volcanii DS2]
gi|291371079|gb|ADE03306.1| conserved hypothetical protein [Haloferax volcanii DS2]
Length = 390
Score = 45.9 bits (107), Expect = 0.027, Method: Composition-based stats.
Identities = 40/283 (14%), Positives = 76/283 (26%), Gaps = 47/283 (16%)
Query: 32 RLGKWEEQLL--------SSEKIDKLPACGFGFVCGVGEQPL-----YAFDIDSKDEKTA 78
G W + + L + F G + L Y D D++D
Sbjct: 98 GYGPWGSEPVVVSVAAPDDGRDYAALVSEATAFWEGNDSRYLEYEIDYEVDADARDPDLV 157
Query: 79 NTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAY 138
F D + G G P + +++++ +T +DI+
Sbjct: 158 VRFTDDIPVCSGLDDA-AGCAPYLTDGWQIDRPETVYVRTGYGDDSTVDIVAHELGHTLG 216
Query: 139 NIHPK--------------------TKKEYTWTTPPHRFKVEDT----PLLSEEDVEYLF 174
H T+K + W P ++DT P + E V +
Sbjct: 217 LAHGDEPADLMNATGILYTLPRTNATEKAFPWDDPNFTVHIDDTNASDPDAAREQVRHAL 276
Query: 175 KFFQ--EITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGS------- 225
+F+ +P + + ++ SC Y+
Sbjct: 277 DYFEGGAPGMPDNLTYTYVDDPADAEVRISFADSSPCAAGAASCAIAGGYDPDGDGALET 336
Query: 226 HDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYK 268
+ + V++ + E G G A + E F
Sbjct: 337 YGSYRVVLVDLDTEAVGWHVGYWTAHYLGAEADDDKPEPFRNA 379
>gi|291297141|ref|YP_003508539.1| Bifunctional DNA primase/polymerase [Meiothermus ruber DSM 1279]
gi|290472100|gb|ADD29519.1| Bifunctional DNA primase/polymerase [Meiothermus ruber DSM 1279]
Length = 1002
Score = 45.9 bits (107), Expect = 0.030, Method: Composition-based stats.
Identities = 28/152 (18%), Positives = 51/152 (33%), Gaps = 17/152 (11%)
Query: 8 EQAKQAIHNGFKLIPLRLGDKRPQRL---GKWEEQLLSSEKIDKL----PACGFGFVCGV 60
+ A + G+ ++PL G+KRP E + + P G G +
Sbjct: 6 QAALEYARLGYAVLPLLPGEKRPHSRLAPNGLTNATPDPEVLRRWWQAVPTAGVGIL--- 62
Query: 61 GEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEG--IKKKKT 118
+ + D D+ + + + L P R P+ + + I T
Sbjct: 63 PPEQVLVLDFDA--PEVWEQLRAEYPELATAPRQR---SPRGGVHVFLKLPKSLIGSLTT 117
Query: 119 TESTQGHLDILGCGQYFVAYNIHPKTKKEYTW 150
T LD+ G G+ ++A Y+W
Sbjct: 118 TARKMPGLDLRGLGKAYLAAAPTELPNGGYSW 149
>gi|149408297|ref|YP_001294576.1| hypothetical protein ORF068 [Pseudomonas phage M6]
Length = 803
Score = 45.9 bits (107), Expect = 0.030, Method: Composition-based stats.
Identities = 40/268 (14%), Positives = 95/268 (35%), Gaps = 30/268 (11%)
Query: 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSR 560
+ + +RG G+GKS ++ FG Y+ +++ ++ + L +
Sbjct: 489 EVAVVLRGRRGTGKSFFAKVLGAMFGRHYLQVSDSKHLVGSFN----------AHLRDTV 538
Query: 561 IVIISET-NENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVR-N 618
++ E D+ + + +K + + + + +P + N+ V
Sbjct: 539 LLFGDEAFFAGDKKHESVLKTLVTEEHLVIEGKGVDA-EAAPNYVHLVLASNEDWVVPAG 597
Query: 619 PDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEV 678
D+ RR+ V+ + +D ++ ++++ + L + Y +V
Sbjct: 598 LDE---RRFFVMEVGEG-HKQDHAYFKRIKDDLDNGGLEHLLHFLLTYDLSAFEVRQVPQ 653
Query: 679 CLKAKEEERQGTDTYQAWIDDCCDIGENLWEES--------HSLAKSY-SEYREQELNYD 729
++++ W+ + G L + SL Y ++ R+Q N+
Sbjct: 654 TRALQDQKIMSMSPETQWMYEKLWEGRLLKTDQDWRNKVVKDSLYDDYVNDLRDQGRNF- 712
Query: 730 RKRISTRTVTLNLKQKGFIGGIKREKIE 757
R+S L + F G + K E
Sbjct: 713 --RMSRTGFGKWLA-RAFPDGWPQSKQE 737
>gi|315503922|ref|YP_004082809.1| bifunctional DNA primase/polymerase [Micromonospora sp. L5]
gi|315410541|gb|ADU08658.1| Bifunctional DNA primase/polymerase [Micromonospora sp. L5]
Length = 299
Score = 45.9 bits (107), Expect = 0.030, Method: Composition-based stats.
Identities = 32/180 (17%), Positives = 50/180 (27%), Gaps = 35/180 (19%)
Query: 14 IHNGFKLIPLRLGDKRP-------------------QRLGKWEEQLLSSEKIDK-LPACG 53
G+++ PLR DKRP +G ++I + A
Sbjct: 12 AARGWRVFPLRPDDKRPAFPDHAADDCTGRDPRCRAGHVGWEARATTDPDRIRRAWSARP 71
Query: 54 FGFVCGVGEQPLYAFDIDSKDEKTANT----------FKDTFEILHGTPIVRIGQKPKIL 103
+G G L D+D+ A + T V G+ L
Sbjct: 72 YGIGLACGPSRLVVVDLDTPKTGGAGGRDGLTVLAELAAAHAATIDPTYTVTTGRGGTHL 131
Query: 104 IPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTP 163
+R G + T + +D G Y VA + YT + P
Sbjct: 132 Y-YRHPDTGPALRNTAGTLGPMVDTRAHGGYVVAPG-STVAGRPYTVD---LDTDLAPLP 186
>gi|17313257|ref|NP_490637.1| hypothetical protein phiCTXp40 [Pseudomonas phage phiCTX]
gi|4063811|dbj|BAA36265.1| unnamed protein product [Pseudomonas phage phiCTX]
Length = 895
Score = 45.9 bits (107), Expect = 0.031, Method: Composition-based stats.
Identities = 33/184 (17%), Positives = 63/184 (34%), Gaps = 12/184 (6%)
Query: 467 QEFLDLVSGYFESEEVMDYFTRCVGMALLGGNK--AQRFIHI--RGVGGSGKSTLMNLIK 522
E+LD + F ++ ++ G + Q F + G G+GKSTL+ +
Sbjct: 514 PEWLDWLWTCFGAKGLVA-LAFWFGSLFAEQIRAEFQSFPFLEATGEAGAGKSTLITFLW 572
Query: 523 YAFG--NQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQ 580
G ++ + R +N ++ L R + + K
Sbjct: 573 KLLGRADEEGQDPSKMTKAGLRRWLTQLSNMPMVMLEADRSDNSRAGGAAKSFDWDEFKP 632
Query: 581 MTGGDC--MTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN 638
+ G +T + GN E P T + N + +A R + + F +P
Sbjct: 633 LFNGRALGVTGQKTAGNETYEPPFRGTLVMSQNATVQ---ASEAIMTRIVKLHFIRPEIT 689
Query: 639 RDAS 642
R++
Sbjct: 690 RESQ 693
>gi|326680871|ref|XP_003201650.1| PREDICTED: DNA-binding protein RFX7-like [Danio rerio]
Length = 1431
Score = 45.5 bits (106), Expect = 0.033, Method: Composition-based stats.
Identities = 17/89 (19%), Positives = 29/89 (32%), Gaps = 6/89 (6%)
Query: 696 WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755
WI + + + Y Y + N +S +K +K +
Sbjct: 92 WIRNHLEEHPETSLPKQEVYDEYKSYCD---NLGYHPLSAADFGKIMKN--VFPNMKARR 146
Query: 756 IEKEWKSKRIIKGLKLKPAFESVDDNSNI 784
+ KSK GL+ K AF + N+
Sbjct: 147 LGMRGKSKYCYSGLR-KKAFVHMPSLPNL 174
>gi|254385241|ref|ZP_05000572.1| conserved hypothetical protein [Streptomyces sp. Mg1]
gi|194344117|gb|EDX25083.1| conserved hypothetical protein [Streptomyces sp. Mg1]
Length = 367
Score = 45.5 bits (106), Expect = 0.034, Method: Composition-based stats.
Identities = 33/189 (17%), Positives = 52/189 (27%), Gaps = 65/189 (34%)
Query: 10 AKQAIHNGFKLIPLRLGDKRP-------------------QRLGKWEE----QLLSSEKI 46
A+ NG+ + PL G K P G+W L E+I
Sbjct: 27 ARWCASNGWPVHPLAPGRKTPAANCRECSQPGHTRTGCLCPAAGRWCHGFHAATLDYERI 86
Query: 47 DKL----PACGFGFVCGVGEQPLYAFDIDSKDEK-----------------------TAN 79
D+ P+ G CG L DID+ + T
Sbjct: 87 DQWWGKTPSLGVAVACG--PAGLVVIDIDAHQSEPPHRDKVLPGIPIGEHIDLSGMTTGY 144
Query: 80 TFKDTFEILHGTP-------IVRIGQKPKILIP--FRMNKEGIKKKKTTESTQ---GHLD 127
L G P +R+ + P + +R + T + +D
Sbjct: 145 HSLAVLAALRGEPSPAEDTSTLRV-RTPSGGLHVWYRATDGRRWQCSTGSGKRALAWQVD 203
Query: 128 ILGCGQYFV 136
+ G Y +
Sbjct: 204 VRAHGGYII 212
>gi|123239278|ref|XP_001287574.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121855254|gb|EAX74644.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 194
Score = 45.5 bits (106), Expect = 0.035, Method: Composition-based stats.
Identities = 32/188 (17%), Positives = 61/188 (32%), Gaps = 16/188 (8%)
Query: 560 RIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV 616
++++ +E D +N+ +K + Y ++ + + N
Sbjct: 2 KLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDSRVCENVANFIMVSNNAVPMK 61
Query: 617 RNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-I 675
D RRY+V+ +D + L T E + I
Sbjct: 62 LESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTPEFYNHLFSYFMTLDISKFNPRQI 117
Query: 676 PEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIST 735
P + E + Y+ +ID+ + + SL SY +Y ++ Y S
Sbjct: 118 PHTEERQTLLEANKS-VYELFIDETDFVSLDER----SLYDSYKQYCQE---YGYMAASK 169
Query: 736 RTVTLNLK 743
RT N+K
Sbjct: 170 RTFLANVK 177
>gi|262382812|ref|ZP_06075949.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
gi|262295690|gb|EEY83621.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B]
Length = 407
Score = 45.5 bits (106), Expect = 0.035, Method: Composition-based stats.
Identities = 34/188 (18%), Positives = 64/188 (34%), Gaps = 27/188 (14%)
Query: 472 LVSGYFESE-EV-MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529
L+ F + E+ MDY L K + + +GKST +N +K F +
Sbjct: 103 LIEHIFSEQYELGMDYLQLLY---LKPTQKLPILLLVSEERNTGKSTFLNFLKALF-QEN 158
Query: 530 VINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTA 589
V D G ++++ E N ++ ++K ++
Sbjct: 159 VTFNTNEDFRSQFN----------ADWAGKLMIVVDEVLLNRREDSERLKNLSTAHSYKM 208
Query: 590 RLNYGNTYSESPASFTPFIVP----NKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQ 645
+ Y F F++ N +++ + +W R I + D SF Q
Sbjct: 209 EAKGKDRYEV--QFFAKFVLCSNNENFPVYIEPEETRYWVRKI-----SRLVTDDTSFLQ 261
Query: 646 KLETKYTL 653
KL+ +
Sbjct: 262 KLKDEIPA 269
>gi|163803932|ref|ZP_02197766.1| hypothetical protein 1103602000458_AND4_04253 [Vibrio sp. AND4]
gi|159172269|gb|EDP57163.1| hypothetical protein AND4_04253 [Vibrio sp. AND4]
Length = 80
Score = 45.5 bits (106), Expect = 0.036, Method: Composition-based stats.
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 209 EITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYK 268
E+ G + + +W + A++ E ++I WS+ GSTYD+ +FN
Sbjct: 8 ELHEAEEALGYISPDLPYIDWSKIGRALYSEY--GDAARDIFEDWSEAGSTYDKRSFNSW 65
Query: 269 WDTFD 273
W F
Sbjct: 66 WKNFR 70
>gi|330832275|ref|YP_004401100.1| hypothetical protein SSUST3_0448 [Streptococcus suis ST3]
gi|329306498|gb|AEB80914.1| hypothetical protein SSUST3_0448 [Streptococcus suis ST3]
Length = 457
Score = 45.5 bits (106), Expect = 0.037, Method: Composition-based stats.
Identities = 43/291 (14%), Positives = 91/291 (31%), Gaps = 50/291 (17%)
Query: 459 PFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRF---------IHIRGV 509
+ + + + + +E+ + Y + M +G + F + + G
Sbjct: 130 AYDSWDHKERLNQVFQTWLGAEDSI-YVQKIAEMFFVGAVS-KVFNPWVKFDYTLDLVGG 187
Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISE--- 566
G+GK+T + I + Y +A D M +M +++ +
Sbjct: 188 QGAGKTTFLQKIAV---DWYTDSA--KDFMDK----------DNYEIMLKSLIVNDDEMV 232
Query: 567 TNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRR 626
+ + +K +T R +YG + P +F NK ++ + RR
Sbjct: 233 ASRKTTFDE--LKAFVTKTDLTFRRSYGRRAEKFPKNFVIARTSNKVEYLGDKTG--ERR 288
Query: 627 YIVI------PFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCL 680
++ I F KP D Q EA + KG + + ++
Sbjct: 289 FLPILVDAAKQFVKPFDMTDNDVLQ-----LWGEAVAIYKKGFTLTFDEDFEDEL--AVY 341
Query: 681 KAKEEERQG-TDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDR 730
K + R + ++D + WE + + + R
Sbjct: 342 KERFTYRDEAENQIYDYLD---MLVPEEWESMSVVQQHQYTWAYFNNGVYR 389
>gi|209963401|ref|YP_002296316.1| virulence-associated protein E, putative [Rhodospirillum centenum
SW]
gi|209956867|gb|ACI97503.1| virulence-associated protein E, putative [Rhodospirillum centenum
SW]
Length = 842
Score = 45.5 bits (106), Expect = 0.037, Method: Composition-based stats.
Identities = 44/250 (17%), Positives = 82/250 (32%), Gaps = 30/250 (12%)
Query: 484 DYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP 543
+ V L G K + + G G+GKST + ++ D +
Sbjct: 560 RWLISAVARILRPGAKVDHMLILEGPQGTGKSTALKVLAG------------EDWFTDEL 607
Query: 544 PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPAS 603
E G + + ++ G I+ I+E + +IK R Y + P
Sbjct: 608 AEIGSRDCA-QQMRGVWIIEIAELDAIGRAEVERIKAFLTRTTDRYRPPYERYVIDVPRQ 666
Query: 604 FTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGV 663
+ + D+ RR+ + + D ++ + EA F G
Sbjct: 667 --CVFAGSVNPDTYLRDETGNRRFWPLRCGRI----DLDALRQDRDQLWAEAVARFRDGA 720
Query: 664 KAYISKGLDVDIPEVCLKAK--EEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEY 721
++ D P++ A+ +E R D + A ID Y ++
Sbjct: 721 IWWL------DDPDLIAAARIEQEARYQGDAWDARIDRWLTHERRRINRG---YAGYDDW 771
Query: 722 REQELNYDRK 731
R++E+ DR
Sbjct: 772 RDEEVERDRP 781
>gi|302873740|ref|YP_003842373.1| Bifunctional DNA primase/polymerase [Clostridium cellulovorans
743B]
gi|307690022|ref|ZP_07632468.1| Bifunctional DNA primase/polymerase [Clostridium cellulovorans
743B]
gi|302576597|gb|ADL50609.1| Bifunctional DNA primase/polymerase [Clostridium cellulovorans
743B]
Length = 893
Score = 45.5 bits (106), Expect = 0.038, Method: Composition-based stats.
Identities = 32/190 (16%), Positives = 58/190 (30%), Gaps = 29/190 (15%)
Query: 27 DKRPQRLGKWEEQLLSSEK-----IDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTF 81
K P W ++ +SE+ K P GF G + D+D
Sbjct: 42 GKHPI-YSNWGKKATTSEEEIIAEFKKYPKANIGFATG---DNYFVLDVDI--GHGGYES 95
Query: 82 KDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIH 141
+ L T VR G + + +G+ G +DI G VA
Sbjct: 96 LKEYGELKKTLSVRTGSG--GSHHYYLMPDGVTVPNRVGVLNG-VDIRSNGGLVVAPGSV 152
Query: 142 PKTKKEYTWTTPPHRFKVEDTPLLSEE------------DVEYLFKFFQEITVPLVKDKK 189
K+ K Y W ++D + + + V+ + + +E + V
Sbjct: 153 HKSGKHYEWLE---HCSIDDVEITTPDKWLIDLIFSKKSSVKEVPESIEEGSRNAVMASI 209
Query: 190 SIIPSKTWTN 199
+ + +
Sbjct: 210 AGSLRRKGLS 219
>gi|125975335|ref|YP_001039245.1| prophage Lp4 protein 7, DNA replication [Clostridium thermocellum
ATCC 27405]
gi|125715560|gb|ABN54052.1| prophage Lp4 protein 7, DNA replication [Clostridium thermocellum
ATCC 27405]
Length = 266
Score = 45.5 bits (106), Expect = 0.038, Method: Composition-based stats.
Identities = 33/185 (17%), Positives = 52/185 (28%), Gaps = 29/185 (15%)
Query: 4 MQWKEQAKQAIHNGFKLIPLR-----------------LGDKRPQRLGKWEEQLLSSEKI 46
M + A + +IPL K P G + E+I
Sbjct: 1 MTMMDAALKYAEANIPVIPLHWICEGGLCSCKAGKNCDSKGKHPLYTGWYNNSTTDVEQI 60
Query: 47 DKL----PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKI 102
K P G G L D+D ++T + + T L T G
Sbjct: 61 KKWWTKTPNANIGIPTGAKSGWLV-LDVDDGGDETLSALEATHGKLPDTVTAVTGG---G 116
Query: 103 LIPFRMN-KEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTT--PPHRFKV 159
+ + +G T+ G + G VA +IH + Y W +
Sbjct: 117 GLHYIFKYSQGRSIPNKTKFAPGFDNHSTGGLIVVAPSIHVSDNQ-YQWLKGHSSFDKTL 175
Query: 160 EDTPL 164
+ P
Sbjct: 176 AEAPE 180
>gi|329965441|ref|ZP_08302365.1| VirE protein [Bacteroides fluxus YIT 12057]
gi|328522233|gb|EGF49347.1| VirE protein [Bacteroides fluxus YIT 12057]
Length = 710
Score = 45.5 bits (106), Expect = 0.038, Method: Composition-based stats.
Identities = 29/144 (20%), Positives = 46/144 (31%), Gaps = 17/144 (11%)
Query: 476 YFESEEVMD--YFTRCVGM---ALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530
E E+ + VG+ AL Q I + G G GKS + I+
Sbjct: 432 VTEDRELWREGFLRWLVGLVDCALDDDKMNQLVIILYGGQGKGKS---SWIRRLL----- 483
Query: 531 INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA-AKIKQMTGGDCMTA 589
+N RL+ +R+VI E E + + +K++ D +T
Sbjct: 484 ---PPEWKEYFFNGVIDPSNKDEARLLATRLVINMEEFEGVKPGELSALKRIIAQDNVTQ 540
Query: 590 RLNYGNTYSESPASFTPFIVPNKH 613
R Y P + N
Sbjct: 541 RKVYDVEAFNLPRHCSFIGSTNNR 564
>gi|239928908|ref|ZP_04685861.1| hypothetical protein SghaA1_11855 [Streptomyces ghanaensis ATCC
14672]
gi|291437235|ref|ZP_06576625.1| hypothetical protein SSFG_02335 [Streptomyces ghanaensis ATCC
14672]
gi|291340130|gb|EFE67086.1| hypothetical protein SSFG_02335 [Streptomyces ghanaensis ATCC
14672]
Length = 296
Score = 45.5 bits (106), Expect = 0.038, Method: Composition-based stats.
Identities = 31/157 (19%), Positives = 42/157 (26%), Gaps = 26/157 (16%)
Query: 9 QAKQAIHNGFKLIPLRLGDKRPQRLG---------------KWEEQLLSSEKIDK--LPA 51
A A G+ + PLR G KRP G KWE++ +
Sbjct: 8 AALDAAARGWHVFPLRPGTKRPALHGEKTCTRTGPCARGHRKWEQRATVDPDRIRAAWSQ 67
Query: 52 CGFGFVCGVGEQPLYAFDIDSKD-------EKTANTFKDTFEILHGTPIV--RIGQKPKI 102
F G L D+D A TF E R
Sbjct: 68 APFNVGIATGPSGLLVVDLDVPKDKGSSDAPGGAATFAALCERAGHAVPTTYRTRTASGG 127
Query: 103 LIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYN 139
+ G++ T + +D G Y VA
Sbjct: 128 THLYFTAPNGVRLPNTAGTVADSVDTRAWGGYVVAAG 164
>gi|240171663|ref|ZP_04750322.1| hypothetical protein MkanA1_20283 [Mycobacterium kansasii ATCC
12478]
Length = 834
Score = 45.5 bits (106), Expect = 0.039, Method: Composition-based stats.
Identities = 32/201 (15%), Positives = 58/201 (28%), Gaps = 26/201 (12%)
Query: 17 GFKLIPLR----LGDKRPQRL--GKWEEQLLSSEK-IDKLPA---CGFGFVCGVGEQPLY 66
G+ ++P+R K P + +W + S + I A G CG
Sbjct: 89 GWYVLPVRRVAGKAGKHPGGIVGHEWHHKSSSDPQVIAAWYAATDHGIALHCG--RSGAV 146
Query: 67 AFDIDSKDEKTANTFKDTFEILHGTPIVRIGQ--KPKIL-IPFRMNKEGIKKKKTTESTQ 123
FD+D D D T + + P+ F M T
Sbjct: 147 VFDVDDPDA-----MPDVLARHLDTAPHQSSRPDTPRRGHYVFAMPPGQTLGNGTGRLGG 201
Query: 124 GHLDILGCGQYFV-AYNIHPKTKKEYTWT----TPPHRFKVEDTPLLSEEDVEYLFKFFQ 178
+I G + A + HP+ EY W P + + + + +
Sbjct: 202 AWGEIRGANGVIIAAPSWHPE-GGEYRWAHAGIVPVLPADIAELLPDAASAEDAVSDAVV 260
Query: 179 EITVPLVKDKKSIIPSKTWTN 199
+ + ++W +
Sbjct: 261 AAFLAEHRAASRPEVLRSWVS 281
>gi|148807425|gb|ABR13498.1| hypothetical protein [Pseudomonas aeruginosa]
Length = 906
Score = 45.5 bits (106), Expect = 0.039, Method: Composition-based stats.
Identities = 33/182 (18%), Positives = 62/182 (34%), Gaps = 12/182 (6%)
Query: 467 QEFLDLVSGYFESEEVMDYFTRCVGMALLGGNK--AQRFIHI--RGVGGSGKSTLMNLIK 522
E+LD + F ++ ++ G + Q F + G G+GKSTL+ +
Sbjct: 525 PEWLDWLWTCFGAKGLVA-LAFWFGSLFAEQIRAEFQSFPFLEATGEAGAGKSTLITFLW 583
Query: 523 YAFG--NQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQ 580
G ++ + R +N ++ L R + + K
Sbjct: 584 KLLGRADEEGQDPSKMTKAGLRRWLTQLSNMPMVMLEADRSDNSRAGGAAKSFDWDEFKP 643
Query: 581 MTGGDC--MTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN 638
+ G +T + GN E P T + N + +A R + + F +P
Sbjct: 644 LFNGRALGVTGQKTAGNETYEPPFRGTLVMSQNATVQ---ASEAIMTRIVKLHFIRPEIT 700
Query: 639 RD 640
R+
Sbjct: 701 RE 702
>gi|164520995|gb|ABY60414.1| non-structural protein 1 [Penaeus merguiensis densovirus]
Length = 578
Score = 45.5 bits (106), Expect = 0.040, Method: Composition-based stats.
Identities = 28/168 (16%), Positives = 53/168 (31%), Gaps = 26/168 (15%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVI 563
+ + G SGK+ L+ + + IM N ++ + S IV+
Sbjct: 394 MMLYGNSNSGKTQLIEALTGLV---------NTAIMTNVGDGGTFHFSNITEM--STIVV 442
Query: 564 ISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPN-KHLFVR----N 618
+ET + + K + GG+ +T + Y ++ P + N H V +
Sbjct: 443 GNETKIRTQ-TIEQWKGLCGGENVTMPMKYKEH--KTHMFRKPVFLTNQHHPLVDISHYD 499
Query: 619 PDDAWWRRYIVI-------PFDKPIANRDASFAQKLETKYTLEAKKWF 659
A R + P + I + K + T
Sbjct: 500 DRRAIENRSFMYKVELGKEPVNAHIKFPNRMIPIKKNPELTQFVLASM 547
>gi|148245137|ref|YP_001219830.1| hypothetical protein CKL_4029 [Clostridium kluyveri DSM 555]
gi|146337017|gb|ABQ23628.1| hypothetical protein CKL_4029 [Clostridium kluyveri DSM 555]
Length = 263
Score = 45.5 bits (106), Expect = 0.041, Method: Composition-based stats.
Identities = 16/106 (15%), Positives = 38/106 (35%), Gaps = 15/106 (14%)
Query: 667 ISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQEL 726
+ + +DIPE + + + ++D+ C+ + L ++Y ++ + E
Sbjct: 172 LMQNFGIDIPEEVFETTGIQC-DM-AVKEFVDNQCEK--TGKVKIAELHETYMKWCKTEG 227
Query: 727 NYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLK 772
K ++ ++ GF R G++LK
Sbjct: 228 ---VKPLTKVKFGKEVELLGFEKAAFGI--------GRCWTGIQLK 262
>gi|289450250|ref|YP_003475196.1| DNA mismatch repair protein MutS [Clostridiales genomosp. BVAB3
str. UPII9-5]
gi|289184797|gb|ADC91222.1| DNA mismatch repair protein MutS [Clostridiales genomosp. BVAB3
str. UPII9-5]
Length = 876
Score = 45.5 bits (106), Expect = 0.041, Method: Composition-based stats.
Identities = 58/394 (14%), Positives = 111/394 (28%), Gaps = 74/394 (18%)
Query: 303 LASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSM 362
L R D I F Y + + Y+ TL I + L S+
Sbjct: 456 LEQRERDRSGIRNLKIGYNRVFGYYIEISKSNLEKVPADYLRKQTLANGERYITDELKSL 515
Query: 363 KEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLL 422
+E V + + T+ R + TA +L + ++
Sbjct: 516 EEKVL-------GAQQKLLQLEYSLFTELREMAADFGHDLLETAANLAYLDSLAALAEAA 568
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEV 482
D + ++Y+ + ++F++ G F ++
Sbjct: 569 DKYNFV------------------RPDIYVDRKLHIIAGRHPVVEQFVE--KGRFVPNDL 608
Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMN-----LIKYAFGNQ--------- 528
+ + + + G +GKST M +I G+
Sbjct: 609 I-------------LPDDKSLLLLTGPNMAGKSTFMRQTALIVIMAQMGSFVPAAKAEIG 655
Query: 529 -----YVINAEASDIMQNRPP---EAGKANPSLIRLMGSRIVIISETNENDE------IN 574
Y + D+ + E + L + ++I+ E I
Sbjct: 656 IVDAIYTRIGASDDLTAGQSTFMVEMHEVATILAKATKRSLLIMDEIGRGTSTYDGLAIA 715
Query: 575 AAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK 634
+A I+ +TG D + AR + Y E + + V N A RR I F
Sbjct: 716 SAVIETLTGKDGIQARTLFSTHYHE------LVEMEDILPNVINYHVAVERRGEEIIFLH 769
Query: 635 PIANRDASFAQKLETKYTLEAKKWFLKGVKAYIS 668
I + + +E K ++ +
Sbjct: 770 QIERGGSDDSFGIEVARLAGVPKNVVERANELLK 803
>gi|167739962|ref|ZP_02412736.1| putative helicase [Burkholderia pseudomallei 14]
Length = 317
Score = 45.1 bits (105), Expect = 0.043, Method: Composition-based stats.
Identities = 14/74 (18%), Positives = 21/74 (28%), Gaps = 8/74 (10%)
Query: 205 YTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYD-EE 263
+ L C DEW+ + MA + E W G+ Y E
Sbjct: 3 DDPLRARSALFCLDA---GCERDEWVRIGMAYKASGGDT----ETWVEWCATGANYSGER 55
Query: 264 NFNYKWDTFDFEEI 277
+ W + D
Sbjct: 56 DARAVWKSIDVAGG 69
>gi|302317864|ref|YP_003799994.1| non-structural protein 1 [Fenneropenaeus chinensis hepatopancreatic
densovirus]
gi|301133810|gb|ADK63426.1| non-structural protein 1 [Fenneropenaeus chinensis hepatopancreatic
densovirus]
Length = 578
Score = 45.1 bits (105), Expect = 0.045, Method: Composition-based stats.
Identities = 28/168 (16%), Positives = 53/168 (31%), Gaps = 26/168 (15%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVI 563
+ + G SGK+ L+ + + IM N ++ + S IV+
Sbjct: 394 MMLYGNSNSGKTQLIEALTGLV---------NTAIMTNVGDGGTFHFSNITEM--STIVV 442
Query: 564 ISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPN-KHLFVR----N 618
+ET + + K + GG+ +T + Y ++ P + N H V +
Sbjct: 443 GNETKIRTQTIE-QWKGLCGGENVTMPMKYKEH--KTHMFRKPVFLTNQHHPLVDISHYD 499
Query: 619 PDDAWWRRYIVI-------PFDKPIANRDASFAQKLETKYTLEAKKWF 659
A R + P + I + K + T
Sbjct: 500 DRRAIENRSFMYKVELGSEPVNAHIKFPNRMIPIKKNPELTQFVLASM 547
>gi|32698615|ref|NP_872530.1| helicase [Adoxophyes orana granulovirus]
gi|32526770|gb|AAP85713.1| helicase [Adoxophyes orana granulovirus]
Length = 1138
Score = 45.1 bits (105), Expect = 0.045, Method: Composition-based stats.
Identities = 31/163 (19%), Positives = 54/163 (33%), Gaps = 24/163 (14%)
Query: 489 CVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGK 548
+ + + I I GKS+L L+ ++ + E K
Sbjct: 821 FCASLAIPVDNEKMCIVISSKPNCGKSSLWELLSNII------------LVHKQDKEVYK 868
Query: 549 ANP----SLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCM-TARLNYGNTYSESPAS 603
N ++L S++ +++E + + A +K + + +AR NYG S
Sbjct: 869 HNNNERDEKVKLYESQLYVMNEAQKFTK---AYLKSIVDNNRTDSARCNYG-VMETFKIS 924
Query: 604 FTPFIVPNKHLFV---RNPDDAWWRRYIVIPFDKPIANRDASF 643
F + N + D A R I FD N F
Sbjct: 925 FKSLVCNNDDDKIVILDGYDKACSNRIGQIYFDHEFDNDIKEF 967
>gi|219684051|ref|YP_002470433.1| hypothetical protein CKR_P23 [Clostridium kluyveri NBRC 12016]
gi|219570559|dbj|BAH08542.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 273
Score = 45.1 bits (105), Expect = 0.045, Method: Composition-based stats.
Identities = 16/106 (15%), Positives = 38/106 (35%), Gaps = 15/106 (14%)
Query: 667 ISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQEL 726
+ + +DIPE + + + ++D+ C+ + L ++Y ++ + E
Sbjct: 182 LMQNFGIDIPEEVFETTGIQC-DM-AVKEFVDNQCEK--TGKVKIAELHETYMKWCKTEG 237
Query: 727 NYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLK 772
K ++ ++ GF R G++LK
Sbjct: 238 ---VKPLTKVKFGKEVELLGFEKAAFGI--------GRCWTGIQLK 272
>gi|313158753|gb|EFR58140.1| VirE N-terminal domain protein [Alistipes sp. HGB5]
Length = 310
Score = 45.1 bits (105), Expect = 0.047, Method: Composition-based stats.
Identities = 37/254 (14%), Positives = 75/254 (29%), Gaps = 49/254 (19%)
Query: 52 CGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILH----------------GTPIVR 95
G + L DID KD + + L IV
Sbjct: 67 RGGAANTLLKPTGLICMDIDRKDNLQVEGYDRLKDQLGRLPYVAFCGRSVGGEGYYAIVP 126
Query: 96 IGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPH 155
I Q K+L+ FR + DI + FV+Y
Sbjct: 127 IAQPNKLLLHFRSLQTKF-SAMGITIDPSCCDI--SRKRFVSY----------------- 166
Query: 156 RFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLS 215
+ P +++E + ++ + + I + T ++ +E+ ++
Sbjct: 167 ----DPEPYINQEA-----EIYEGLGLADGAAVPDITGNATLPGTDSEDEPLKEVLKYIQ 217
Query: 216 CFGEEFYNGS--HDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFD 273
++ + + + W+ + A+H+ G+E+ R S Y + +
Sbjct: 218 IIEQKKVDITAGYANWLRIGYALHNAF--GDFGRELFHRVSSFHPRYSYVETDRLFSGLS 275
Query: 274 FEEIGDTAKKRSTF 287
+ RS F
Sbjct: 276 KGNCANQVTIRSFF 289
>gi|549225|sp|Q05112|VE1_HPV30 RecName: Full=Replication protein E1; AltName: Full=ATP-dependent
helicase E1
gi|396976|emb|CAA52545.1| early protein [Human papillomavirus type 30]
Length = 631
Score = 45.1 bits (105), Expect = 0.048, Method: Composition-based stats.
Identities = 26/191 (13%), Positives = 61/191 (31%), Gaps = 26/191 (13%)
Query: 451 YITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVG 510
+IT EG + + + ++ + + + L G + + G
Sbjct: 407 WITHICS-KVDEGGDWRPIVQFLR--YQGVDFISFL--SYFKLFLRGTPKHNCLVLYGPP 461
Query: 511 GSGKSTL-MNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569
+GKS M+LI++ G+ ++ L L +++ ++ + +
Sbjct: 462 NTGKSCFAMSLIQFFQGSVIS-------------YVNSHSHFWLQPLDNAKLGMLDDATD 508
Query: 570 N--DEINAAKIKQMTGGDCMTARLNYGNTYSES-PASFTPFIVPNKHLFVRNPDDAWWRR 626
I+ ++ + G+ ++ + P I N + R
Sbjct: 509 ACWRYIDE-YMRNLLDGNPVSLDRKHKQLVQIKCPP---VIITTNINPLHDAKLQYLHSR 564
Query: 627 YIVIPFDKPIA 637
V+PF P
Sbjct: 565 IHVVPFLNPFP 575
>gi|295398108|ref|ZP_06808157.1| DNA primase domain protein [Aerococcus viridans ATCC 11563]
gi|294973627|gb|EFG49405.1| DNA primase domain protein [Aerococcus viridans ATCC 11563]
Length = 440
Score = 45.1 bits (105), Expect = 0.048, Method: Composition-based stats.
Identities = 35/167 (20%), Positives = 56/167 (33%), Gaps = 20/167 (11%)
Query: 469 FLDLVSGYFESEEVMDYFTRCVGMAL----LGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524
F+D + G + E + R + + G K + + G G+GKSTL
Sbjct: 129 FIDYL-GATDDEYNREVAKRWLCGGIARIYYPGIKFEIVPILEGSQGAGKSTL---AGKL 184
Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGG 584
G +V + G+ L+G+ IV +SE + K
Sbjct: 185 AGKYFVDTLKGM----------GQHKDDNQLLIGAWIVELSELASLRKSEIENTKGFLSS 234
Query: 585 DCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIP 631
RL Y S P + T N ++ + RR+ IP
Sbjct: 235 SEDKVRLPYEKNVSTLPRTNTFIGTTNATEYLTDFTGN--RRFFPIP 279
>gi|284040171|ref|YP_003390101.1| ATPase P [Spirosoma linguale DSM 74]
gi|283819464|gb|ADB41302.1| P-loop ATPase and inactivated derivatives-like protein [Spirosoma
linguale DSM 74]
Length = 749
Score = 45.1 bits (105), Expect = 0.048, Method: Composition-based stats.
Identities = 18/110 (16%), Positives = 36/110 (32%), Gaps = 8/110 (7%)
Query: 188 KKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYN--GSHDEWIPVVMAVHHETRGSSK 245
KK K +T +I L + GS+++W + A+ +
Sbjct: 195 KKYPRKEKKEVVKLPYTHTETDIRYVLDQIHARALDLTGSYEDWFRIGWALISQY--GEV 252
Query: 246 GKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHG 295
+ I S+ S+YD + + K++ + T +Y
Sbjct: 253 ARPIFHEVSQYHSSYDSNDCDKKFNYL----VATRPHSIKIATFYYYCRQ 298
>gi|284006692|emb|CBA71952.1| conserved hypothetical protein [Arsenophonus nasoniae]
Length = 423
Score = 45.1 bits (105), Expect = 0.049, Method: Composition-based stats.
Identities = 53/358 (14%), Positives = 96/358 (26%), Gaps = 50/358 (13%)
Query: 431 EQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVM-DYFTRC 489
D + +L G VKP + + +E+ Y
Sbjct: 91 CPDTVYNLYMGLSVKPVEGDCSLYLNHIRHI--------------ICSGDEIAYQYVIAW 136
Query: 490 VGMALLGGNKAQ--RFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAG 547
+ L+ + I ++ V G+GK T + + G V A +
Sbjct: 137 MAH-LIQKPDEKPSVAIAMKSVRGAGKGTFVKPLLQILGQYGVQVNGAEHLTAKFN---- 191
Query: 548 KANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPF 607
L +V E + K+ + + + S
Sbjct: 192 ------AMLANKLLVFADEATVASAKDGEKLNGIISESTFNLERKGIDPEPMANFS-RLI 244
Query: 608 IVPNKHLFVRNPDDAWW-RRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
N ++ RRY+V+ D A +D S+ L + L ++ Y
Sbjct: 245 FASNSTQALKA---GIKERRYLVLEPDGSRA-QDKSYFDNLYQWVNDKGAAKLLYYLQHY 300
Query: 667 ISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENL----WEESHSLAKSYSEYR 722
G D KEE G A++ E L +Y +
Sbjct: 301 DISGFDRHRAPKTEALKEEILFGLTGLYAYLYAELSKDEPFDRKVRIPVTELIDNYLFWC 360
Query: 723 EQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDD 780
+ + + + V + + G K R G+ + SVD+
Sbjct: 361 KSNGEPETEAAARSRVGKTMIRMGL------------NKLGRRGCGIGIVYELPSVDE 406
>gi|170693950|ref|ZP_02885106.1| AAA ATPase central domain protein [Burkholderia graminis C4D1M]
gi|170141022|gb|EDT09194.1| AAA ATPase central domain protein [Burkholderia graminis C4D1M]
Length = 321
Score = 45.1 bits (105), Expect = 0.049, Method: Composition-based stats.
Identities = 46/277 (16%), Positives = 89/277 (32%), Gaps = 48/277 (17%)
Query: 421 LLDSSSRFLGEQDGILDLETGQKVKPTKELY--ITKSTGTPF-VEGEPSQEFLDLVSGYF 477
LD L DL G + Y + K+ F V+ DL+
Sbjct: 16 DLDQVETALN------DLSEG-ANDALRTTYEKMLKTGNLRFCVKPNRMPSIDDLIDALP 68
Query: 478 ESEEVMDYFTRCVGMALLGGNKAQRFIHIR-GVGGSGKSTLMNLIKYAFGNQYVINAEAS 536
+ +D + V + L ++ + + G G GK+ + G Y A +S
Sbjct: 69 NFADPLDDIRKQVALCLETEDRLELMPILLLGDPGIGKTHFAKQLARLLGTAYQYVAMSS 128
Query: 537 DI---------MQNRPPEAGKANPSLIRLMGSRIVI-ISETNENDEINA----AKIKQMT 582
Q + + GK +L+ + VI + E ++ + + +
Sbjct: 129 LTAGWILSGASSQWKNAKPGKVFDALVNGSYANPVITVDEIDKATGDSQYDPLGALYALL 188
Query: 583 GGDCMTARLNYGNTYSESP--ASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD 640
D + + + ++E P A +I R+ + R V ++ P +RD
Sbjct: 189 EHDTAQS---FIDEFAEIPINAGHVIWIATAN--DARSIPEPIMNRMNV--YEIPPPDRD 241
Query: 641 --ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDI 675
AQ + + ++G + GL
Sbjct: 242 GARRIAQSIYAE---------IRGAHNW---GLRFPE 266
>gi|260816690|ref|XP_002603221.1| hypothetical protein BRAFLDRAFT_226535 [Branchiostoma floridae]
gi|229288538|gb|EEN59232.1| hypothetical protein BRAFLDRAFT_226535 [Branchiostoma floridae]
Length = 197
Score = 45.1 bits (105), Expect = 0.050, Method: Composition-based stats.
Identities = 14/90 (15%), Positives = 27/90 (30%), Gaps = 5/90 (5%)
Query: 687 RQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746
R WI ++ + + Y Y + N + +S +K
Sbjct: 39 RVEQTNALHWIRSHLEVHPDTSLPKQDVFDEYKTYCD---NMKYRNLSPADFGKMMKMA- 94
Query: 747 FIGGIKREKIEKEWKSKRIIKGLKLKPAFE 776
+K ++ SK GL+ K +
Sbjct: 95 -FPNLKARRLGTRGNSKYCYGGLRKKSELQ 123
>gi|332141504|ref|YP_004427242.1| hypothetical protein MADE_1010530 [Alteromonas macleodii str. 'Deep
ecotype']
gi|327551526|gb|AEA98244.1| hypothetical protein MADE_1010530 [Alteromonas macleodii str. 'Deep
ecotype']
Length = 979
Score = 45.1 bits (105), Expect = 0.050, Method: Composition-based stats.
Identities = 27/157 (17%), Positives = 47/157 (29%), Gaps = 18/157 (11%)
Query: 468 EFLDLVSGYFESEEVMDYFTRCVGMALLG------GNKAQRFIHIRGVGGSGKSTLMNLI 521
++ ++ Y E + T V +A G G H G GKSTLMN+
Sbjct: 524 DWQREIASYCEGNPL---LTLAVSLAFTGPLVSLMGLSENVGFHFYGDSSLGKSTLMNVA 580
Query: 522 KYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM 581
+G + A L ++ + E NE + + I M
Sbjct: 581 CSVYGKPSE--------FKGSWRTTDNALEDTAALHSDMLLALDELNEANPLTIEGIIYM 632
Query: 582 TGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRN 618
G R + + + + N + +
Sbjct: 633 VGNGKGKNRS-GPDYAKKKTQRWNLAFLSNGEKTIDD 668
>gi|329768036|ref|ZP_08259547.1| hypothetical protein HMPREF0428_01244 [Gemella haemolysans M341]
gi|328838521|gb|EGF88129.1| hypothetical protein HMPREF0428_01244 [Gemella haemolysans M341]
Length = 731
Score = 45.1 bits (105), Expect = 0.053, Method: Composition-based stats.
Identities = 44/347 (12%), Positives = 108/347 (31%), Gaps = 54/347 (15%)
Query: 318 IYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVF-DLSEEPEDN 376
FLY D K NN D +MN + +++E F ++ + E
Sbjct: 292 YNFTDRFLYKFDKKQ------NNKSNEKKKGDFTLFDLMNTIENLREIKFNEVKDLIEIK 345
Query: 377 NKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGIL 436
+ + + R ++ + K +++ ++ +++ ++ D +
Sbjct: 346 REGKFETLNNKDINLLRLDLSKLKKVNFSSEDIK-TALYGVS----DKNKY--------- 391
Query: 437 DLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLG 496
+ I + E ++ F G ++ + + + +
Sbjct: 392 ---------HPIKQLI---EPVEWDGIERAETFFIDCLGVEDNAVNREVSRKWLLACITR 439
Query: 497 ----GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS 552
G K + + G G GKST ++ + + + +
Sbjct: 440 LYKKGCKFDEMLILFGGQGIGKST---TLERLALDTFYTKVTGKL-----------NDNT 485
Query: 553 LIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612
+++ S +V + E + + K T R Y ++ F N
Sbjct: 486 ILQTSQSWLVELDELSTLLRTPTQEFKSWLSSRKDTTRAPYEAQPTDFYRGFVVLGTTND 545
Query: 613 HLFVRNPDDAWWRRYIVIPFDK-PIANRDASFAQKLETKYTLEAKKW 658
+ +++ RR+ ++ ++ I + +K + E K W
Sbjct: 546 NKILKDHTGN--RRFWILECNEDKIKKSIFNVEEKEILQIWAEVKTW 590
>gi|327198747|emb|CCA61448.1| unnamed protein product [Diadromus pulchellus ascovirus 4a]
Length = 161
Score = 45.1 bits (105), Expect = 0.053, Method: Composition-based stats.
Identities = 24/133 (18%), Positives = 47/133 (35%), Gaps = 17/133 (12%)
Query: 626 RYIVIPFDKPIA-----------NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGL-DV 673
R +++PF RD + + K + + K F+ + G+ D+
Sbjct: 3 RLVIVPFRSKFVGGEADPDTYTFQRDCNISDKFKL-WRSALLKHFISHCR---KNGIADM 58
Query: 674 DIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRI 733
++P + K E + + W+ D E + + L + Y + E + K I
Sbjct: 59 EMPSSMVDWKNEILEENNVVAEWLWDAVRPQEGSFVQLAELRERYKKDHPHERAFKNKDI 118
Query: 734 STRTVTLNLKQKG 746
R + KG
Sbjct: 119 -ERMINSAFNAKG 130
>gi|289644930|ref|ZP_06476972.1| Bifunctional DNA primase/polymerase [Frankia symbiont of Datisca
glomerata]
gi|289505239|gb|EFD26296.1| Bifunctional DNA primase/polymerase [Frankia symbiont of Datisca
glomerata]
Length = 212
Score = 45.1 bits (105), Expect = 0.053, Method: Composition-based stats.
Identities = 21/118 (17%), Positives = 27/118 (22%), Gaps = 10/118 (8%)
Query: 37 EEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRI 96
+ + +PA G L DID T TP +
Sbjct: 63 TDPARIHAMLTTIPAGLLAVRTGAVSG-LVVVDID---PGHGGRLDRTLM----TPTATV 114
Query: 97 GQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYN-IHPKTKKEYTWTTP 153
G +DI G Y A HP T + Y W
Sbjct: 115 ATG-GGGWHLYYQHPGTPVLSRPLPGHVGIDIKADGGYVTAPPSTHPTTGRPYQWVGT 171
>gi|29566306|ref|NP_817873.1| gp22 [Mycobacterium phage Corndog]
gi|29425031|gb|AAN01954.1| gp22 [Mycobacterium phage Corndog]
Length = 786
Score = 44.7 bits (104), Expect = 0.054, Method: Composition-based stats.
Identities = 36/187 (19%), Positives = 69/187 (36%), Gaps = 21/187 (11%)
Query: 6 WKEQAKQAIHNGFK-LIPLRLGDKRPQRLG--KWEEQLLSSEKIDKLPACGF-GFVCGVG 61
+ + A+ G++ ++PL+ K P G ++ + S I + G +C
Sbjct: 9 YGDAAQVYWDKGWRGVLPLKRETKWPPPSGFTGYDGAVPSYPDILQWSELYPDGNLCLRL 68
Query: 62 EQPLYAFDIDSKDEKTANTFKDTFEILHGTPI------VRIGQKPKILIPFRMNKEGIKK 115
+ D+D+ KT E G R+ L FR+ G
Sbjct: 69 PDGVVGIDVDAYGAKTGAAALAEAERRWGPLPDGPQSTSRLDDPVSGLRLFRVP-PGTLL 127
Query: 116 KKT---TESTQGHLDILG-CGQYFVAYN-IHPKTKKEYTWTTPPHRF----KVEDTPLLS 166
+ E + G ++++ +Y V + IHP+ + Y W + +++D P L
Sbjct: 128 ETIIVFRELSIGDIEVIQPHHRYAVCWPSIHPE-GRAYWWRNSQGQTIGIPELDDIPELP 186
Query: 167 EEDVEYL 173
+E L
Sbjct: 187 PSWLEGL 193
>gi|67920909|ref|ZP_00514428.1| hypothetical protein CwatDRAFT_5379 [Crocosphaera watsonii WH 8501]
gi|67857026|gb|EAM52266.1| hypothetical protein CwatDRAFT_5379 [Crocosphaera watsonii WH 8501]
Length = 300
Score = 44.7 bits (104), Expect = 0.055, Method: Composition-based stats.
Identities = 23/128 (17%), Positives = 46/128 (35%), Gaps = 12/128 (9%)
Query: 428 FLGEQDGILDLETGQKVKPT-KELYITKSTGTPF---VEGEPSQEFLDLVSGYFESEE-V 482
+ +G+ D++ G+ + Y+ + EGE E L L+ +E +
Sbjct: 136 VIPFSNGVFDIKKGKFRVGAEPQDYLLSLGENFYYWDYEGEKPVEILHLIDMMSGGDEKL 195
Query: 483 MDYFTRCVGMALLGGN-----KAQRFIHIR--GVGGSGKSTLMNLIKYAFGNQYVINAEA 535
+ + ++G + + G SG+STL N++ GN+
Sbjct: 196 RELILAVCWLNIVGVQERRYDGFKNCFILWTSKDGYSGRSTLFNILDTCSGNRICHLERL 255
Query: 536 SDIMQNRP 543
D+ P
Sbjct: 256 EDLTDANP 263
>gi|307150955|ref|YP_003886339.1| virulence-associated E family protein [Cyanothece sp. PCC 7822]
gi|306981183|gb|ADN13064.1| virulence-associated E family protein [Cyanothece sp. PCC 7822]
Length = 496
Score = 44.7 bits (104), Expect = 0.056, Method: Composition-based stats.
Identities = 65/431 (15%), Positives = 141/431 (32%), Gaps = 81/431 (18%)
Query: 362 MKEDVFDLSEEPE--DNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITS 419
+ +DV +S+ P+ D + + R +N ++ ++ S+ + G +F I +
Sbjct: 98 LFKDVPRISKAPQLLDFLRLKFADRITWNVRTQKICLDGKEIETSSLRVFF-GDMFGIDA 156
Query: 420 DLLDSSSRFLGEQDGILDLETGQKVKPTK-ELYITKSTGTPFVEGEPSQEFLDLVSGYFE 478
L ++ + + Y+ K ++ +L S +
Sbjct: 157 SE---DLWKACL------LRIAEENEFDPVKDYLLKC-----QLNTQVRDIKNLASEFLG 202
Query: 479 SEEVM--DYFTRCVGMALLGGNK--------AQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528
E + +Y R L+G + + + G G GK++ G+
Sbjct: 203 CNEPLYNEYLYRW----LIGAVRRVFEPGSKFDNALVLYGNQGVGKTSFFE----ILGSG 254
Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA----AKIKQMTGG 584
+ N+ GK + ++ V+ E E D + A IK
Sbjct: 255 FFSNSMT-----------GKLDKDDYMILAQSWVL--EWGELDGFTSKTYHATIKHFLSK 301
Query: 585 DCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFA 644
+ R+ YG + P N F+ +P RR+ +IP R
Sbjct: 302 REDSYRVPYGKNLLKMPRRSVIVGTTNSDNFLSDPSGN--RRFWIIP------VRKQQID 353
Query: 645 QKLETKYTLEAKKWFLKGVKAYISKGLDVDIPE---VCLKAKEEERQGTDTYQAWIDDCC 701
+L + Y G+ ++P+ + + D ++ +I +C
Sbjct: 354 LELLKGSVKSIWSSAV---IDYQK-GISDNLPKEFWKLQEEDNNYYEYEDPWENYIIECT 409
Query: 702 DI-----GENLW-EESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755
GE+ S+ + + + + + ++ LK+ GF +E+
Sbjct: 410 KQTLQKEGEDFQGINSNEFFNFLNT---NGMTVSKDKKNEMRLSDILKKLGFS----KER 462
Query: 756 IEKEWKSKRII 766
+ K+ + R+
Sbjct: 463 VRKKGRQVRVY 473
>gi|282163697|ref|YP_003356082.1| putative AAA ATPase [Methanocella paludicola SANAE]
gi|282156011|dbj|BAI61099.1| putative AAA ATPase [Methanocella paludicola SANAE]
Length = 292
Score = 44.7 bits (104), Expect = 0.057, Method: Composition-based stats.
Identities = 27/225 (12%), Positives = 67/225 (29%), Gaps = 45/225 (20%)
Query: 478 ESEEVMDYFTRC-VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF-----GNQYVI 531
+ E ++ +G I G G+GK+T + ++ G+ Y
Sbjct: 21 QDEAIVRALMYINLGYP----------IMFYGPPGNGKTT---IAEHILNYISSGDNYYR 67
Query: 532 NAEASDIMQ-----NRPPEAGKANPSLIR------------LMGSRIVIISETNENDEIN 574
+ + P + NP L + + + ++I E N
Sbjct: 68 IEATEGMTEYHTIGGFHPLSMSGNPELSKKFVYKDGVITRAVKERKNLLIDEFNRAPTTA 127
Query: 575 AAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPN-KHLFVRNPDDAWWRRYIVIPF- 632
+ + + + + + P + + N A RR+I I F
Sbjct: 128 YSGLFMLLSAGILPVE--HSEEVLKKPDDWVLVVTANLGDEGTFKMSSALKRRFIPI-FI 184
Query: 633 ---DKPIANRDAS-FAQKLETKYTLEAKKWFLKGVKAYISKGLDV 673
++ + +A +++ + + + + + + L
Sbjct: 185 GYINRFTEEKVVRAYAPEMDQQIVNAVLDFAEETRRLWQEEKLLP 229
>gi|315640373|ref|ZP_07895488.1| prophage Lp4 protein 7 [Enterococcus italicus DSM 15952]
gi|315483878|gb|EFU74359.1| prophage Lp4 protein 7 [Enterococcus italicus DSM 15952]
Length = 265
Score = 44.7 bits (104), Expect = 0.058, Method: Composition-based stats.
Identities = 38/226 (16%), Positives = 63/226 (27%), Gaps = 31/226 (13%)
Query: 13 AIHNGFKLIPLRLGDKRP--------QRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQP 64
+ GFK++PL+ K P + E P G G
Sbjct: 7 YLQAGFKVLPLQSNKKIPFTTETFTNGFKSATNDIQALKEHWVNYPESNLGIRVGEDTG- 65
Query: 65 LYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQG 124
L DID + T ++ P P + + + +
Sbjct: 66 LIVLDIDVHEVDGYKTLSAIEKVHEPLPNTLEVATPTGGKHYYFKLPEGIQIERQINQFA 125
Query: 125 HLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPL 184
+DIL G Y VA K+Y S ++ +F ++
Sbjct: 126 GIDILTNG-YVVAPPSSID-GKKYEIVNG------------SLNEIAIFPTWFLKV---F 168
Query: 185 VKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWI 230
K + +P K + + AFL G ++WI
Sbjct: 169 DTKKMNELPVKPFFTVGKKYTG-----AFLDELVAGCAKGGRNDWI 209
>gi|284123522|ref|ZP_06386933.1| ATPase (AAA+ superfamily)-like protein [Candidatus Poribacteria sp.
WGA-A3]
gi|283829253|gb|EFC33661.1| ATPase (AAA+ superfamily)-like protein [Candidatus Poribacteria sp.
WGA-A3]
Length = 383
Score = 44.7 bits (104), Expect = 0.058, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 3/69 (4%)
Query: 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSR 560
++ + G G GKST + + AF N YVIN A DI Q G + L + G R
Sbjct: 11 EKSFFLLGPRGVGKSTYLRI---AFPNAYVINLLAEDIYQRLLANPGLLSAELRAVPGDR 67
Query: 561 IVIISETNE 569
V++ E
Sbjct: 68 WVVLDEIQR 76
>gi|160890228|ref|ZP_02071231.1| hypothetical protein BACUNI_02668 [Bacteroides uniformis ATCC 8492]
gi|317480211|ref|ZP_07939318.1| DNA primase [Bacteroides sp. 4_1_36]
gi|156859960|gb|EDO53391.1| hypothetical protein BACUNI_02668 [Bacteroides uniformis ATCC 8492]
gi|316903593|gb|EFV25440.1| DNA primase [Bacteroides sp. 4_1_36]
Length = 1017
Score = 44.7 bits (104), Expect = 0.058, Method: Composition-based stats.
Identities = 44/248 (17%), Positives = 79/248 (31%), Gaps = 33/248 (13%)
Query: 509 VGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN 568
G SGKS + L++ Y+ + R+V I +
Sbjct: 720 NGRSGKSLVGELMRQVVDTVYISGKRTDIFNDSFIWNDIDERT--------RLVFIDDVM 771
Query: 569 ENDEINAAKIKQMTGGDCMT----ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWW 624
N +TG + AR+ Y +++SP +I N +R ++
Sbjct: 772 LNFNF-EFLFPNLTGDWTVNKKGGARITY--PFAKSP---KVYIPTNH--AIRGTGSSYT 823
Query: 625 RRYIVIPF-----DKPIANRDASFAQKLETKYTLEAKKW--FLKGVKAYISKGLDVDIPE 677
R +I F DK D E +T W ++ Y+ G+ E
Sbjct: 824 DRQWLIAFSDFYNDKHKPMDDFGVLFFSEWDFTQWNLTWNMLANCIQLYLKFGVVQAPGE 883
Query: 678 VCLKAKEEERQGTDTYQAWIDDCCDIGENL-WEESHSLAKSYSEYREQELNYDRKRISTR 736
+ K + G T +W D+ E+ + ++ Y RK I++
Sbjct: 884 RLQQRKLRQEIGE-TIISWADEYFSSEEHCRRTPRKEIYDNFCNY----DPQQRKYITST 938
Query: 737 TVTLNLKQ 744
+K+
Sbjct: 939 AFKDKIKK 946
>gi|281419297|ref|ZP_06250313.1| Bifunctional DNA primase/polymerase [Clostridium thermocellum JW20]
gi|281407163|gb|EFB37425.1| Bifunctional DNA primase/polymerase [Clostridium thermocellum JW20]
Length = 268
Score = 44.7 bits (104), Expect = 0.059, Method: Composition-based stats.
Identities = 32/185 (17%), Positives = 53/185 (28%), Gaps = 29/185 (15%)
Query: 4 MQWKEQAKQAIHNGFKLIPLR-----------------LGDKRPQRLGKWEEQLLSSEKI 46
+ + A + +IPL K P G ++ E+I
Sbjct: 3 VTMMDAALKYAEANIPVIPLHWICEGGLCSCKAGKNCDSKGKHPLYTGWYKNSTTDVEQI 62
Query: 47 DKL----PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKI 102
K P G G L D+D ++T + + T L T G
Sbjct: 63 KKWWTKTPNANIGIPTGAKSGWLV-LDVDDGGDETLSALEATHGKLPDTVTAVTGG---G 118
Query: 103 LIPFRMN-KEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTT--PPHRFKV 159
+ + +G T+ G + G VA +IH + Y W +
Sbjct: 119 GLHYIFKYSQGRSIPNKTKFAPGFDNHSTGGLIVVAPSIHVSDNQ-YQWLKGHSSFDKTL 177
Query: 160 EDTPL 164
+ P
Sbjct: 178 AEAPE 182
>gi|261410419|gb|ACX80280.1| non-structural protein 1 [Penaeus monodon hepatopancreatic
parvovirus]
Length = 577
Score = 44.7 bits (104), Expect = 0.059, Method: Composition-based stats.
Identities = 25/131 (19%), Positives = 48/131 (36%), Gaps = 19/131 (14%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVI 563
+ + G SGK+ L+ + + +M N ++ + S IV+
Sbjct: 393 MMLYGNSNSGKTQLIEALTGLV---------NTAVMTNVGDGGTFHFSNITEM--STIVV 441
Query: 564 ISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPN-KHL--FVRNPD 620
+ET + + K + GG+ +T + Y ++ P + N H + N D
Sbjct: 442 GNETKIRTQ-TIEQWKGLCGGENVTMPMKYKEH--KTHMFRKPVFLTNQHHPLVEISNYD 498
Query: 621 D--AWWRRYIV 629
D A R +
Sbjct: 499 DRKAIENRCFM 509
>gi|284038164|ref|YP_003388094.1| ATPase P [Spirosoma linguale DSM 74]
gi|283817457|gb|ADB39295.1| P-loop ATPase and inactivated derivatives-like protein [Spirosoma
linguale DSM 74]
Length = 748
Score = 44.7 bits (104), Expect = 0.060, Method: Composition-based stats.
Identities = 17/110 (15%), Positives = 36/110 (32%), Gaps = 8/110 (7%)
Query: 188 KKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGS--HDEWIPVVMAVHHETRGSSK 245
KK K +T +I L + + + +++W + A+ +
Sbjct: 194 KKYPRKEKKEVVKLPYTHTESDIRYVLDQIHAKALDLTAAYEDWFRIGWALISQY--GDA 251
Query: 246 GKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHG 295
+ I S+ S+YD N + K++ + T +Y
Sbjct: 252 ARPIFHEVSQYHSSYDPNNCDKKFNYL----VATRPHSIKIATFYYYCRQ 297
>gi|189521400|ref|XP_688865.3| PREDICTED: DNA-binding protein RFX7-like [Danio rerio]
Length = 1466
Score = 44.7 bits (104), Expect = 0.060, Method: Composition-based stats.
Identities = 13/79 (16%), Positives = 25/79 (31%), Gaps = 5/79 (6%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
+WI + + + Y Y + + +S +K +K
Sbjct: 96 SWIRNHLEEHPETSLPKQEVYDEYKSYCD---SLGYHALSAADFGKIMKN--VFPNMKAR 150
Query: 755 KIEKEWKSKRIIKGLKLKP 773
++ KSK GL+ K
Sbjct: 151 RLGMRGKSKYCYSGLRKKT 169
>gi|292668068|gb|ADE40847.1| non-structural protein 1 [Penaeus monodon hepatopancreatic
parvovirus]
Length = 577
Score = 44.7 bits (104), Expect = 0.061, Method: Composition-based stats.
Identities = 25/131 (19%), Positives = 48/131 (36%), Gaps = 19/131 (14%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVI 563
+ + G SGK+ L+ + + +M N ++ + S IV+
Sbjct: 393 MMLYGNSNSGKTQLIEALTGLV---------NTAVMTNVGDGGTFHFSNITEM--STIVV 441
Query: 564 ISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPN-KHL--FVRNPD 620
+ET + + K + GG+ +T + Y ++ P + N H + N D
Sbjct: 442 GNETKIRTQTIE-QWKGLCGGENVTMPMKYKEH--KTHMFRKPVFLTNQHHPLVEISNYD 498
Query: 621 D--AWWRRYIV 629
D A R +
Sbjct: 499 DRKAIENRCFM 509
>gi|329936166|ref|ZP_08285959.1| hypothetical protein SGM_1451 [Streptomyces griseoaurantiacus M045]
gi|329304276|gb|EGG48156.1| hypothetical protein SGM_1451 [Streptomyces griseoaurantiacus M045]
Length = 300
Score = 44.7 bits (104), Expect = 0.061, Method: Composition-based stats.
Identities = 33/165 (20%), Positives = 47/165 (28%), Gaps = 36/165 (21%)
Query: 8 EQAKQAIHNGFKLIPLRLGDKRPQRLG---------------KWEEQLLSS-----EKID 47
A A G+ + PLR G KRP G KWE++ +
Sbjct: 6 TAALDAAARGWHVFPLRPGTKRPALHGETACPGTGPCERGHRKWEQRATTDPGRIRATWS 65
Query: 48 KLPACGFGFVCGVGEQPLYAFDIDSK--DEKTANTFKDTF-EILHGTPIVRIGQK-PKIL 103
+ P G G L D+D D+K + G R G P
Sbjct: 66 RAPY-NVGIATG--PSGLVVVDLDLPKNDDKGKGSSDAPCGAASFGALCERAGHAVPDTY 122
Query: 104 I---------PFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYN 139
+ GI+ + + +D G Y VA
Sbjct: 123 RTRTASGGTHLYFTAPPGIRLGNSAGTVAPLVDTRAWGGYVVAAG 167
>gi|212671461|ref|YP_002308470.1| non-structural protein 1 [Penaeus monodon hepatopancreatic
parvovirus]
gi|212285885|gb|ACJ23370.1| non-structural protein 1 [Penaeus monodon hepatopancreatic
parvovirus]
Length = 577
Score = 44.7 bits (104), Expect = 0.063, Method: Composition-based stats.
Identities = 25/131 (19%), Positives = 48/131 (36%), Gaps = 19/131 (14%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVI 563
+ + G SGK+ L+ + + +M N ++ + S IV+
Sbjct: 393 MMLYGNSNSGKTQLIEALTGLV---------NTAVMTNVGDGGTFHFSNITEM--STIVV 441
Query: 564 ISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPN-KHL--FVRNPD 620
+ET + + K + GG+ +T + Y ++ P + N H + N D
Sbjct: 442 GNETKIRTQTIE-QWKGLCGGENVTMPMKYKEH--KTHMFRKPVFLTNQHHPLVEISNYD 498
Query: 621 D--AWWRRYIV 629
D A R +
Sbjct: 499 DRKAIENRCFM 509
>gi|71667860|ref|XP_820875.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70886237|gb|EAN99024.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 721
Score = 44.7 bits (104), Expect = 0.063, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 4/66 (6%)
Query: 224 GSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGS-TYDEENFNYKWDTFDFEEIGDTAK 282
S+D W+ V +A+H+ E R+S + Y E+ KW F E D
Sbjct: 646 ESYDIWVRVGLALHN-FSNEDHVFEEWVRFSLKCPQKYSRESCRKKWQQF--ERNPDALN 702
Query: 283 KRSTFT 288
R F
Sbjct: 703 WRRGFN 708
>gi|322816464|gb|EFZ24760.1| hypothetical protein TCSYLVIO_9094 [Trypanosoma cruzi]
Length = 712
Score = 44.7 bits (104), Expect = 0.064, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 4/66 (6%)
Query: 224 GSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGS-TYDEENFNYKWDTFDFEEIGDTAK 282
S+D W+ V +A+H+ E R+S + Y E+ KW F E D
Sbjct: 637 ESYDIWVRVGLALHN-FSNEDHVFEEWVRFSLKCPQKYSRESCRKKWQQF--ERNPDALN 693
Query: 283 KRSTFT 288
R F
Sbjct: 694 WRRGFN 699
>gi|260429685|ref|ZP_05783661.1| conserved hypothetical protein [Citreicella sp. SE45]
gi|260419168|gb|EEX12422.1| conserved hypothetical protein [Citreicella sp. SE45]
Length = 517
Score = 44.7 bits (104), Expect = 0.065, Method: Composition-based stats.
Identities = 13/63 (20%), Positives = 18/63 (28%), Gaps = 5/63 (7%)
Query: 243 SSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGL 302
+G + WS Q + + W +F IG T L G L
Sbjct: 8 GEEGATLFAEWSGQAAKNNPAATAKAWASFRPARIGA-----GTIYHLAMEKGWRPDPDL 62
Query: 303 LAS 305
L
Sbjct: 63 LLD 65
>gi|71660435|ref|XP_821934.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70887325|gb|EAO00083.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 722
Score = 44.7 bits (104), Expect = 0.065, Method: Composition-based stats.
Identities = 18/66 (27%), Positives = 26/66 (39%), Gaps = 4/66 (6%)
Query: 224 GSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGS-TYDEENFNYKWDTFDFEEIGDTAK 282
S+D W+ V +A+H+ E R+S + Y E+ KW F E D
Sbjct: 647 ESYDIWVRVGLALHN-FSNEDHVFEEWVRFSLKCPQKYSRESCRKKWQQF--ERNPDALN 703
Query: 283 KRSTFT 288
R F
Sbjct: 704 WRRGFN 709
>gi|123153670|ref|XP_001277863.1| hypothetical protein [Trichomonas vaginalis G3]
gi|123156908|ref|XP_001278545.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121823099|gb|EAX64933.1| conserved hypothetical protein [Trichomonas vaginalis G3]
gi|121825656|gb|EAX65615.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 211
Score = 44.7 bits (104), Expect = 0.066, Method: Composition-based stats.
Identities = 37/209 (17%), Positives = 67/209 (32%), Gaps = 19/209 (9%)
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGN 595
M N GK N S+ + +++ +E D +N+ +K + Y +
Sbjct: 1 MTNLENICGKFNSSIENMK---LIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKD 57
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
+ + N D RRY+V+ +D + L T +
Sbjct: 58 QRVCENVANFIMVSNNAVPMKLESSD---RRYVVVR-TSEAHMQDTEYFDDLAETLTSDF 113
Query: 656 KKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
+ IP + E + Y+ +ID+ + + SL
Sbjct: 114 YNHLFSYFMTLDISKFNPRQIPHTEERQTLLEANKS-VYELFIDETDFVSLDER----SL 168
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLK 743
SY +Y ++ Y S RT N+K
Sbjct: 169 YDSYKQYCQE---YGYMAASKRTFLANVK 194
>gi|239905623|ref|YP_002952362.1| hypothetical protein DMR_09850 [Desulfovibrio magneticus RS-1]
gi|239795487|dbj|BAH74476.1| hypothetical protein [Desulfovibrio magneticus RS-1]
Length = 680
Score = 44.7 bits (104), Expect = 0.069, Method: Composition-based stats.
Identities = 23/135 (17%), Positives = 38/135 (28%), Gaps = 15/135 (11%)
Query: 24 RLGDKRPQR-LGKWEEQLLSSEKIDK--LPACGFGFVCGVGEQPLYAFDIDSKDEKTANT 80
+ K W+ D+ G CG L D +
Sbjct: 56 KAAKKYKGPVENGWQRWCREKRPFDQANFSTDRAGIACGPASGVL------VLDVDNHHL 109
Query: 81 FKDTFEILHGTPIVRIGQKPKIL-----IPFRMNKEGIKKKKTTESTQGHLDILGCGQYF 135
F+ + H + + K K ++ S +G DI G G
Sbjct: 110 FEAWIQENHPDEPLPVTLKVKTGGHGERFHLYFQYPLGDEQYFCRSVKGTFDIRGIGGQV 169
Query: 136 VAYN-IHPKTKKEYT 149
+ +HP+T+K Y
Sbjct: 170 LCPGSLHPETRKPYV 184
>gi|123235220|ref|XP_001286724.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121852801|gb|EAX73794.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 211
Score = 44.7 bits (104), Expect = 0.069, Method: Composition-based stats.
Identities = 37/209 (17%), Positives = 67/209 (32%), Gaps = 19/209 (9%)
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGN 595
M N GK N S+ + +++ +E D +N+ +K + Y +
Sbjct: 1 MTNLENICGKFNSSIENMK---LIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKD 57
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
+ + N D RRY+V+ +D + L T +
Sbjct: 58 QRVCENVANFIMVSNNTVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDF 113
Query: 656 KKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
+ IP + E + Y+ +ID+ + + SL
Sbjct: 114 YNHLFSYFMTLDISKFNPRQIPHTEERQTLLEANKS-VYEQFIDETDFVSLDER----SL 168
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLK 743
SY +Y ++ Y S RT N+K
Sbjct: 169 YDSYKQYCQE---YGYMTASKRTFLANVK 194
>gi|209402852|gb|ACI46050.1| E1 [Feline papillomavirus type 2]
Length = 602
Score = 44.7 bits (104), Expect = 0.070, Method: Composition-based stats.
Identities = 64/469 (13%), Positives = 127/469 (27%), Gaps = 74/469 (15%)
Query: 182 VPLVKDKKSIIPSKTWTNNNNRQYTNREIT---AFLSCFGEEFYNGS---------HDEW 229
P + S P + W + +N+ T F G F + + +W
Sbjct: 129 TPEQVETASGSPERNWGAEALLRSSNQRATLLGKFKDLVGVSFTELTRTFRSNKTCYTDW 188
Query: 230 IPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTS 289
+ + V+ + S + + Y + G F +
Sbjct: 189 V---VCVYGVSGPV----------SLTAPSLLTPHCEY----LNLTVHGGRGAILVVFLA 231
Query: 290 LFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKK-DKNNVYIWSLTL 348
F L D + + + K WYK N +
Sbjct: 232 RFKTSKSRETVCKLVKALMDVKDAQIMAQPPKVKS--VPAALYWYKCGIGNGGVVHGPHP 289
Query: 349 DKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQS 408
+ I M + +E F + + N +Y R E+++ +
Sbjct: 290 EWILQQTMISHKTGEEARFSFGDMVQWAYDNDFRDECQIAYEYARLATEDSNALAWLECN 349
Query: 409 LEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGE-PSQ 467
+A + D + G + + + +I K + +
Sbjct: 350 NQAKFVK-------DCARMV-----GYY--KRAEMQNMSISAWIHKQ--IKDRQCTTDWK 393
Query: 468 EFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTL-MNLIKYAFG 526
L+ + F+ EV+ + M LL G + + + G +GKS M+LI+ G
Sbjct: 394 VILNFLK--FQHVEVIIFLNAM--MHLLRGTPKKNCLVLYGPPNTGKSMFAMSLIQCLKG 449
Query: 527 NQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN--DEINAAKIKQMTGG 584
++ L L ++I ++ + D I+ + G
Sbjct: 450 RVLS-------------YVNSRSQFWLQPLADAKIALLDDATRPCWDYIDINLRNALDGN 496
Query: 585 DCMTARLNYGNTYSES-PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF 632
+ + P + N + W R V F
Sbjct: 497 -PICLDCKHRAPVQIKCPP---LIVTTNVDIQADARWRYLWSRVRVFKF 541
>gi|320103976|ref|YP_004179567.1| Bifunctional DNA primase/polymerase [Isosphaera pallida ATCC 43644]
gi|319751258|gb|ADV63018.1| Bifunctional DNA primase/polymerase [Isosphaera pallida ATCC 43644]
Length = 629
Score = 44.3 bits (103), Expect = 0.071, Method: Composition-based stats.
Identities = 26/146 (17%), Positives = 45/146 (30%), Gaps = 5/146 (3%)
Query: 8 EQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYA 67
A + G+++ P G+ P + + E+I++ + L
Sbjct: 8 TAALRYAELGYRVFPCAPGNSTPLTDHGFLDATTEVEQIERWWGQHPTANVAIATAGLLV 67
Query: 68 FDIDSKDEKTANT-FKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQG-H 125
D+D + AN KD + P+ K K + T S
Sbjct: 68 VDLDPAEGNAANPWLKDDPDKRLDLAAAPTAMTPRGGRHHVFRKPAGKGWRCTASRLAPK 127
Query: 126 LDILGCGQY-FVAYNIHPKTKKEYTW 150
+D G Y V + P Y+W
Sbjct: 128 VDTRTDGGYIIVPPSWRPD--GAYSW 151
>gi|209978605|gb|ACJ04680.1| non-structural protein 1 [Penaeus monodon hepatopancreatic
parvovirus]
Length = 577
Score = 44.3 bits (103), Expect = 0.072, Method: Composition-based stats.
Identities = 25/131 (19%), Positives = 48/131 (36%), Gaps = 19/131 (14%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVI 563
+ + G SGK+ L+ + + +M N ++ + S IV+
Sbjct: 393 MMLYGNSNSGKTQLIEALTGLV---------NTAVMTNVGDGGTFHFSNITEM--STIVV 441
Query: 564 ISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPN-KHL--FVRNPD 620
+ET + + K + GG+ +T + Y ++ P + N H + N D
Sbjct: 442 GNETKIRTQTIE-QWKGLCGGENVTMPMKYKEH--KTHMFRKPVFLTNQHHPLVEISNYD 498
Query: 621 D--AWWRRYIV 629
D A R +
Sbjct: 499 DRKAIENRCFM 509
>gi|90962626|ref|YP_536542.1| hypothetical protein LSL_1657 [Lactobacillus phage Sal3]
gi|90821820|gb|ABE00459.1| Hypothetical protein, phage associated [Lactobacillus phage Sal3]
Length = 256
Score = 44.3 bits (103), Expect = 0.072, Method: Composition-based stats.
Identities = 18/128 (14%), Positives = 45/128 (35%), Gaps = 6/128 (4%)
Query: 8 EQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPAC--GFGFVCGVGEQPL 65
+Q + + G + P+ K+P + + + I + + + L
Sbjct: 5 DQVIEMVQRGLYVYPIVPNGKQPIKDYSYLKATQDIALIKRWFMDEPNINIGLNLAKSNL 64
Query: 66 YAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIP--FRMNKEGIKKKKTTESTQ 123
DID+ + + + + P + + + +R + +GI + T+
Sbjct: 65 IIVDIDNHNNDLQAPLQSLSNLGYNLPSDYVERTKSGGLHFYYRCS-DGIPATRKTKFID 123
Query: 124 GHLDILGC 131
G +D+L
Sbjct: 124 G-VDLLSD 130
>gi|285017883|ref|YP_003375594.1| hypothetical protein XALc_1092 [Xanthomonas albilineans GPE PC73]
gi|283473101|emb|CBA15606.1| hypothetical protein XALc_1092 [Xanthomonas albilineans]
Length = 160
Score = 44.3 bits (103), Expect = 0.073, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549
+G AL AQ +H+ G G+GKSTL + A G + I + +++ P G+A
Sbjct: 16 LGQALAATRPAQAAVHLHGDLGAGKSTLARALLRALGVRGAIRSPTYTLLERYPLADGEA 75
Query: 550 -NPSLIRL 556
+ L R+
Sbjct: 76 WHLDLYRI 83
>gi|330815841|ref|YP_004359546.1| hypothetical protein bgla_1g09050 [Burkholderia gladioli BSR3]
gi|327368234|gb|AEA59590.1| hypothetical protein bgla_1g09050 [Burkholderia gladioli BSR3]
Length = 930
Score = 44.3 bits (103), Expect = 0.074, Method: Composition-based stats.
Identities = 13/61 (21%), Positives = 22/61 (36%), Gaps = 5/61 (8%)
Query: 210 ITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKW 269
+ LS + H +W+ V + +E +G I WS+ TY + W
Sbjct: 10 LLVALSHIPPDI---QHQDWMRVAAGLKYEL--GEEGFRIFDDWSRGAETYVAASAKSTW 64
Query: 270 D 270
Sbjct: 65 R 65
>gi|332976117|gb|EGK12985.1| N- superfamily bifunctional DNA primase/polymerase [Desmospora sp.
8437]
Length = 798
Score = 44.3 bits (103), Expect = 0.078, Method: Composition-based stats.
Identities = 36/191 (18%), Positives = 60/191 (31%), Gaps = 30/191 (15%)
Query: 9 QAKQAIHNGFKLIPLRLGDKR----------------PQRLGKWEEQLLSSEKIDKLPA- 51
+A + +G K+I + +R P E I K+
Sbjct: 14 EALRLASHGVKVIQIHAPTRRGCSCGRKKCGKSNGKHPLLESWAEHATADPAAIQKMWEK 73
Query: 52 ---CGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPI---VRIGQKPKILIP 105
G G L+A D+D + T + + P V G L
Sbjct: 74 NSWANVGVPMGKVNG-LFAIDVD--GPEGQETLQKWIQEHGELPATWQVLTGGGGMQLW- 129
Query: 106 FRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTW--TTPPHRFKVEDTP 163
+R+ K G++ + + ++DI G G VA ++ Y W T P K P
Sbjct: 130 YRVPK-GMEIPNSVKKIGINVDIRGTGGQSVAPGSLHQSGNRYRWAPTRGPEDLKPSAPP 188
Query: 164 LLSEEDVEYLF 174
E + +
Sbjct: 189 EWLVEKIREVI 199
>gi|328700677|ref|XP_003241346.1| PREDICTED: non-capsid protein NS-1-like [Acyrthosiphon pisum]
Length = 615
Score = 44.3 bits (103), Expect = 0.082, Method: Composition-based stats.
Identities = 27/110 (24%), Positives = 44/110 (40%), Gaps = 8/110 (7%)
Query: 526 GNQYVINAEASDIM--QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTG 583
G Y +A A+ + N S G R+VI +E N + + K+K++ G
Sbjct: 481 GKNYFFDAVAAFFLNYGMFGTANKTNNFSFSDGAGKRLVIWNEPN-YEVYHLEKMKELLG 539
Query: 584 GDCMTARLNYGNTYSESPASFTPFI-VPNKHLFVRNPDDAWWRRYIVIPF 632
GD + Y N P P I + N +L + D ++ R V +
Sbjct: 540 GDTTRVHVKYKND---VPLQGPPIILLTNHYLSI-INDPSFKDRLSVYTW 585
>gi|307728212|ref|YP_003905436.1| AAA ATPase central domain-containing protein [Burkholderia sp.
CCGE1003]
gi|307582747|gb|ADN56145.1| AAA ATPase central domain protein [Burkholderia sp. CCGE1003]
Length = 325
Score = 44.3 bits (103), Expect = 0.082, Method: Composition-based stats.
Identities = 52/289 (17%), Positives = 98/289 (33%), Gaps = 42/289 (14%)
Query: 421 LLDSSSRFLGEQDGILDLETG--QKVKPTKELYITKSTGTPF-VEGEPSQEFLDLVSGYF 477
LD L DL G + ++ T E + K+ F V+ DL+
Sbjct: 20 DLDQVETALN------DLGEGANEALRTTYEKML-KTGNLRFCVKPNRMPSIDDLIDALP 72
Query: 478 ESEEVMDYFTRCVGMALLGGNKAQRFIHIR-GVGGSGKSTLMNLIKYAFGNQYVINAEAS 536
+ +D + V + L ++ + + G G GK+ + G Y A +S
Sbjct: 73 NFADPLDDIRKQVALCLETEDRLELMPILLLGDPGIGKTHFAKQLARLLGTAYQYVAMSS 132
Query: 537 DI---------MQNRPPEAGKANPSLIRLMGSRIVI-ISETNENDEINA----AKIKQMT 582
Q + + GK +L+ + VI + E ++ + + +
Sbjct: 133 LTAGWILSGASSQWKNAKPGKVFDALVNGSYANPVITVDEIDKATGDSQYDPLGALYALL 192
Query: 583 GGDCMTARLNYGNTYSESP--ASFTPFIVP-NKHLFVRNPDDAWWRRYIVIPFDKPIANR 639
D TAR + + ++E P A +I N + + R V ++ P +R
Sbjct: 193 EHD--TARS-FIDEFAEIPINAGHVIWIATANDERAIP---EPILNRMNV--YEIPPPDR 244
Query: 640 D--ASFAQKLETKYTLEAKKWFL---KGVKAYISKGLDVDIPEVCLKAK 683
+ AQ + + A W L + + + L P +A
Sbjct: 245 EGARRIAQSIYAEI-RGAHNWGLRFPELLGDAALEALKNASPREMRRAI 292
>gi|55416830|gb|AAV50480.1| helicase III/ VV D5-type ATPase (N-term) [Acanthamoeba polyphaga
mimivirus]
Length = 582
Score = 44.3 bits (103), Expect = 0.082, Method: Composition-based stats.
Identities = 29/188 (15%), Positives = 55/188 (29%), Gaps = 27/188 (14%)
Query: 225 SHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGS-TYDEENFNYKWDTFDFEEIGDTAKK 283
+ W V + + + E +SK+ + +E W + + T
Sbjct: 378 DYHTWYQVGRCLSNI---DHRLLEDWITFSKKCPSKFKKEECERLWRNMNMKPSNYTMAT 434
Query: 284 RSTFTSL-----FYHHGKLIPKGLL-----------ASRFSDAYNKAMFSIYKKGHFLYT 327
F S ++ KL GL+ A + Y K Y
Sbjct: 435 LHYFASKDDPDKYFEMKKLKIDGLIKEGMEASHHTIAKLLIEKYKFIYKCASIKNGIWYE 494
Query: 328 ADTKAWYKKDKNNVYIWSLTLDKITASIM-NFLVSMKEDVFDLSEEPEDNNKNSKSPRFW 386
W + D + TL + + ++ N + + +F + + NK K
Sbjct: 495 FRNHRWIEIDS------AYTLRNLISEVLVNEYANRQRILFGEATRQDAENKKEKFNDAV 548
Query: 387 FNTDYRRQ 394
T +Q
Sbjct: 549 NITKVIKQ 556
>gi|313115411|ref|ZP_07800881.1| virulence-associated protein E [Faecalibacterium cf. prausnitzii
KLE1255]
gi|310622252|gb|EFQ05737.1| virulence-associated protein E [Faecalibacterium cf. prausnitzii
KLE1255]
Length = 445
Score = 44.3 bits (103), Expect = 0.084, Method: Composition-based stats.
Identities = 44/283 (15%), Positives = 78/283 (27%), Gaps = 35/283 (12%)
Query: 446 PTKELYITKSTGTPFVEGEPSQEFLDLVSGYFES----EEVMDYFTRCVGMALLGGNKAQ 501
Y+ + + E + L G E + + + A G K +
Sbjct: 108 HPIRDYL---SALVWDGTERIRFCLRHFLGADADDYTYEALKLFLLGAISRAFQPGCKFE 164
Query: 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRI 561
+ + G G+GKST L+ + +L G I
Sbjct: 165 IMLCLVGGQGAGKSTFFRLLA----------VRDEWFSDDLRKLDDD--NVYRKLQGHWI 212
Query: 562 VIISETNENDEINAAKIKQMTGGDCMTARLN--YGNTYSESP---ASFTPFIVPNKHLFV 616
+ +SE + A K + +R Y Y P F + L
Sbjct: 213 IEMSEM-----MATANAKSIEEIKSFLSRQKEVYKIPYETHPADRPRQCVFGGTSNALDF 267
Query: 617 RNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIP 676
D + RR+ IP + + ++ W + ++ Y S +
Sbjct: 268 LPLDRSGNRRF--IPVMVYPEQAEVHILEDEAASRAYISQMWA-EAMEIYRSGRYKLSFS 324
Query: 677 EVCLKAKEEERQG---TDTYQAWIDDCCDIGENLWEESHSLAK 716
+ +E ++ DT I D S L K
Sbjct: 325 PAMQRYLKEHQRDFMPEDTKAGMIQAYLDKYTGETVCSKQLYK 367
>gi|190572364|ref|YP_001970209.1| putative phage-like protein [Stenotrophomonas maltophilia K279a]
gi|190010286|emb|CAQ43894.1| putative phage-related protein [Stenotrophomonas maltophilia K279a]
Length = 898
Score = 44.3 bits (103), Expect = 0.086, Method: Composition-based stats.
Identities = 43/229 (18%), Positives = 73/229 (31%), Gaps = 26/229 (11%)
Query: 437 DL--ETGQKVKPTKELYI------TKST------GTPFVEGEPSQEFLDLVSGYFESEEV 482
DL G+ E Y K+T E+L + F + +
Sbjct: 478 DLAVRNGEVTLANAEDYFEFPKLRIKTTQRSIRMDIQRDHEVYRAEWLQWLWTCFGTNGM 537
Query: 483 MDYFTRCVGMALLGGNK--AQRFIHI--RGVGGSGKSTLMNLIKYAFG-NQYVINAEASD 537
+ T G + + F + G G+GK+TL+ + + Y A
Sbjct: 538 VA-LTFWFGSLFANQIRSAHKSFPFLEATGEAGAGKTTLLTFLWKLLARSDYEGFDPAKS 596
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR--LNYGN 595
R G+ + + L+ + + ++K GG + R N GN
Sbjct: 597 SKAGRARAMGQTSGMPVVLLEAD-RDAPDKAHAKSFEWDELKDYYGGGTLATRGVRNGGN 655
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFA 644
E P T I N + +A R + + F KP A ++ A
Sbjct: 656 ETYEPPFRGTIVISQN---AAVDASEAIMTRIVKLHFRKPNATTESRLA 701
>gi|284504072|ref|YP_003406787.1| highly derived D5-like helicase-primase [Marseillevirus]
gi|282935510|gb|ADB03825.1| highly derived D5-like helicase-primase [Marseillevirus]
Length = 806
Score = 44.3 bits (103), Expect = 0.087, Method: Composition-based stats.
Identities = 61/320 (19%), Positives = 118/320 (36%), Gaps = 44/320 (13%)
Query: 459 PFVEGEPSQEFLDLVSGYFE-----SEEVMDYFTRCVGMALLGGNKAQ---RFIHIRGVG 510
P EG ++ L+ FE S+E DY + ++ + + + +
Sbjct: 500 PVDEGVDREKIRPLLDHLFEIWADGSKENFDYIISWLSH-IIKNPREKTGVALVILSEAQ 558
Query: 511 GSGKSTLMN-LIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569
G+GK + + L+ FG + + + +R L +V++ E N+
Sbjct: 559 GAGKGIITDFLLDKVFGRKLGKCIGDIERVVHRFNSV---------LDKKLLVVLDEMNQ 609
Query: 570 ND----EINAAKIKQMTGGDCMTARLNYGNTYSESPASFT-PFIVPNKHLFVR-NPDDAW 623
D + IK + + T E SF + N V+ D
Sbjct: 610 VDAGAYHKSFDVIKHLITEKTVQIERKGVETTEEE--SFVNFILTTNNTFSVKVEQSD-- 665
Query: 624 WRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDV-DIPEVCLKA 682
RRY + A +D + ++L + E + F+K + + G+D+ +IPE LK
Sbjct: 666 -RRYAMFRCSDKRA-KDFDYFRELAGSLSDECARHFIKFLIDW--GGVDIKNIPETSLK- 720
Query: 683 KEEERQGT-DTYQAWIDDCC----DIGENLWEESHSLAKSYSEYREQELNYDRKRISTRT 737
+E R + + Q +++D D E+ W + + + + + + N K I
Sbjct: 721 -KECRNNSKNASQLFLEDFSTEEYDKDEDGWFSATEVYQDFVMWAQ---NNGYKNIPNAN 776
Query: 738 VTLNLKQKGFIGGIKREKIE 757
V K F +R+ +
Sbjct: 777 VFGRTAGKVFGKKRQRKNGK 796
>gi|228472174|ref|ZP_04056940.1| hypothetical protein CAPGI0001_0492 [Capnocytophaga gingivalis ATCC
33624]
gi|228276377|gb|EEK15101.1| hypothetical protein CAPGI0001_0492 [Capnocytophaga gingivalis ATCC
33624]
Length = 945
Score = 44.3 bits (103), Expect = 0.087, Method: Composition-based stats.
Identities = 42/286 (14%), Positives = 84/286 (29%), Gaps = 64/286 (22%)
Query: 489 CVGMALLGGNKAQRFIHIRGV------------GGSGKSTLMNLIKYAFGNQYVINAEAS 536
CVG L + + G GG+ KS L+N I+ ++Y +
Sbjct: 617 CVGYMLHQHKRESESFIVIGTDYKGGNSVKGSYGGTAKSFLVNGIRKMLKSKY---IDGK 673
Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNT 596
+ N+ P + R+V + + N N + ++TG A G
Sbjct: 674 TLGNNKFPYDKVTEKT-------RLVFLDDMNFNQDFR-DFYNKVTG--DFEANHKGGKI 723
Query: 597 YSESPASFTPFI--VPNKHLFVRNPDDAWWRRYIVIP----FDKPIANRDASFAQKLETK 650
Y P +P + N RR + + D F++K+
Sbjct: 724 Y-YIPFERSPKMAATTNYVPDFEESS--LVRRLLFYQNGDYYHAKTPKNDYLFSRKISDD 780
Query: 651 YTL--------EAKKW--------------------FLKGVKAYISKGLDVDIPEVCLKA 682
+ A++W + ++A ++ + I + CL
Sbjct: 781 FGGRDIMNSDYSAEEWNADYNFLFNCLQFYLSCDQPIMAPLEALQNRRALLSIGDNCLNF 840
Query: 683 KEEERQGTDTYQAWID--DCCDIGENLWEESHSLAKSYSEYREQEL 726
+ WI+ + ++ + Y + +E
Sbjct: 841 LNDYFADEAKLNHWINKPEFVREAIGELGNKYTPYQVYKKLQEYCN 886
>gi|16579844|gb|AAL26659.1| unknown [Staphylococcus aureus]
Length = 276
Score = 44.3 bits (103), Expect = 0.089, Method: Composition-based stats.
Identities = 15/79 (18%), Positives = 32/79 (40%), Gaps = 10/79 (12%)
Query: 448 KELYITKSTGTPFVEGEPSQEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHI 506
K IT+ T F + + ++ + + + + L K +R + +
Sbjct: 194 KSDVITEKTP---------PHFNRYMLEFANFDSDLQYFLFQHIAVLLTANTKYRRALLL 244
Query: 507 RGVGGSGKSTLMNLIKYAF 525
G +GKS ++NL++ F
Sbjct: 245 YGGSKNGKSVVINLVRSFF 263
>gi|322417789|ref|YP_004197012.1| Bifunctional DNA primase/polymerase [Geobacter sp. M18]
gi|320124176|gb|ADW11736.1| Bifunctional DNA primase/polymerase [Geobacter sp. M18]
Length = 643
Score = 43.9 bits (102), Expect = 0.093, Method: Composition-based stats.
Identities = 15/80 (18%), Positives = 32/80 (40%), Gaps = 16/80 (20%)
Query: 693 YQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIK 752
+ W+ + C +GE ++ +L + + K ++ + L++ GF
Sbjct: 580 LKEWLAERCAMGEGFSAQATALLDDFCAW-------SGKTVTPQLFGRLLRESGF----- 627
Query: 753 REKIEKEWKSKRIIKGLKLK 772
E++ S GL+LK
Sbjct: 628 ----ERKKSSVYWYLGLRLK 643
Score = 41.2 bits (95), Expect = 0.64, Method: Composition-based stats.
Identities = 33/212 (15%), Positives = 55/212 (25%), Gaps = 16/212 (7%)
Query: 7 KEQAKQAIHNGFKLIPLRLGDKRPQ-RLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPL 65
+E A G + PLR +P + E I GV
Sbjct: 409 REFALSYAAKGLPIFPLRPNTAKPLFPKRASGDATTDPETISWCWGKTSLANIGVPTGGA 468
Query: 66 YAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGH 125
+ D + E HGT Q P + + + G
Sbjct: 469 SGVAVLVADTQFGLPSLADLEGQHGTIQTPRAQDPSGRLLLFFDCPESGVASCADFLPG- 527
Query: 126 LDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLV 185
LD LG G + V +E W + K + + ++ V
Sbjct: 528 LDFLGDGSFAVLPPSRIG-GQECRWVDQAQKGK------------AKVPNWLLDLVV-HA 573
Query: 186 KDKKSIIPSKTWTNNNNRQYTNREITAFLSCF 217
+ ++ + + + TA L F
Sbjct: 574 RPWARLLKEWLAERCAMGEGFSAQATALLDDF 605
>gi|113970857|ref|YP_734650.1| ATPase central domain-containing protein [Shewanella sp. MR-4]
gi|113885541|gb|ABI39593.1| AAA ATPase, central domain protein [Shewanella sp. MR-4]
Length = 324
Score = 43.9 bits (102), Expect = 0.093, Method: Composition-based stats.
Identities = 36/235 (15%), Positives = 71/235 (30%), Gaps = 43/235 (18%)
Query: 410 EAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF 469
E + +D L+ L + +D T K+ ++ E P F
Sbjct: 33 ERQKRHHVIADRLEQELVKLSTSNSTVDTPT------AKDNRVSSLV----DEISPKLRF 82
Query: 470 LDL---------VSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNL 520
DL ++ E + +D +L N+ + + G G+GK++L
Sbjct: 83 EDLILPDSVKESLNELVEEQSRVDLLR---SYSLEPRNR----VLLVGPPGNGKTSLAEA 135
Query: 521 IKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSR-IVIISETN-----ENDEIN 574
+ + ++ I A + + R +++ E D
Sbjct: 136 LAESMMVPLLVVRYEGIIGSYLGETASRLKKVIDYAATRRCVLLFDEFETLGKERGDTHE 195
Query: 575 AAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIV 629
+IK++ M S + H + D A WRR+ +
Sbjct: 196 TGEIKRVVSSLLMQVDSL---------PSHVIVMAATNHSEL--LDRAVWRRFQL 239
>gi|167580988|ref|ZP_02373862.1| virulence-associated E family protein [Burkholderia thailandensis
TXDOH]
Length = 838
Score = 43.9 bits (102), Expect = 0.097, Method: Composition-based stats.
Identities = 24/129 (18%), Positives = 39/129 (30%), Gaps = 13/129 (10%)
Query: 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRI 561
+ G GG+GKS + + G A + + ++ L
Sbjct: 561 VVPVLIGKGGTGKSRFVQQLAEVLG---FPPPPAISFSDDIRMTMAASVSAIAEL----- 612
Query: 562 VIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDD 621
E + + + +K T R Y P F NKH N D+
Sbjct: 613 ---GEMSGMAKRDMDDVKMWTTECQDVYRGPYERRAESHPRRFVLIGTANKHEL--NRDE 667
Query: 622 AWWRRYIVI 630
RR++ I
Sbjct: 668 TGNRRFMPI 676
>gi|119484048|ref|XP_001261927.1| cell cycle checkpoint protein rad17 [Neosartorya fischeri NRRL 181]
gi|119410083|gb|EAW20030.1| cell cycle checkpoint protein rad17 [Neosartorya fischeri NRRL 181]
Length = 858
Score = 43.9 bits (102), Expect = 0.097, Method: Composition-based stats.
Identities = 30/247 (12%), Positives = 73/247 (29%), Gaps = 32/247 (12%)
Query: 321 KGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNS 380
F ++T+ W + DK+ + ED +D +E +
Sbjct: 111 HNFFPAASETQRWDTHKAESFRWTQPRTDKV-----DISDDTIEDGYDSYDELFSDYIAD 165
Query: 381 KSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLET 440
+ E +A++ + + S F+ ++ L
Sbjct: 166 RKVTPEKRMGAPLAAGERVDQAQAITHTFRSRS-FASNRKRF------------VV-LSA 211
Query: 441 GQKVKPTKELYITKSTGTPFVEGEPSQEFLD-----LVSGYFESEEVMDYFTRCVGMALL 495
+ + S G + + + ++ ++ + + AL
Sbjct: 212 SESKHHG-----SYSLGNNYDKDAEELPWAQKYSPVNLNELAVHKKKIADVQSWLSDAL- 265
Query: 496 GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFG-NQYVINAEASDIMQNRPPEAGKANPSLI 554
++ + +RG GSGK+T ++L+ G + + + + A
Sbjct: 266 -RAFEKKLLVLRGPAGSGKTTTLSLLSDKLGFDVLEWRNPSGSEFAAKGFTSTTAQFEEF 324
Query: 555 RLMGSRI 561
G+R+
Sbjct: 325 LTRGNRL 331
>gi|282929010|ref|ZP_06336596.1| hypothetical protein SAPG_02823 [Staphylococcus aureus A9765]
gi|282591865|gb|EFB96907.1| hypothetical protein SAPG_02823 [Staphylococcus aureus A9765]
Length = 531
Score = 43.9 bits (102), Expect = 0.10, Method: Composition-based stats.
Identities = 15/103 (14%), Positives = 39/103 (37%), Gaps = 2/103 (1%)
Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEV-M 483
++ ++ ++G++ T T ++++ T + + + + E +
Sbjct: 407 NNEYVAVKNGLVHYHTKIFRTFTPDIFVIDKLPTAYNPNAYDEFVDTTIQKVSCNHETTI 466
Query: 484 DYFTRCVGMALLGGNKAQRFIHIRGV-GGSGKSTLMNLIKYAF 525
L + I++ G +GKST+ ++IK F
Sbjct: 467 MNIYEMFAQVLYPKILIDKIIYLLGTVADNGKSTVQHMIKATF 509
>gi|30387319|ref|NP_848398.1| helicase [Choristoneura fumiferana MNPV]
gi|7108525|gb|AAF36456.1|AF127530_1 P143 [Choristoneura fumiferana MNPV]
gi|30270053|gb|AAP29869.1| helicase [Choristoneura fumiferana MNPV]
Length = 1228
Score = 43.9 bits (102), Expect = 0.11, Method: Composition-based stats.
Identities = 26/147 (17%), Positives = 59/147 (40%), Gaps = 10/147 (6%)
Query: 485 YFTRCVGMALLGGNKA-QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP 543
Y G +L ++ +++ GV SGKST L+ + + D +
Sbjct: 899 YMLMHFGGSLSAPTDYGRKAVYLPGVPLSGKSTFFALL------DFWVLMHKFDGETHTG 952
Query: 544 PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPAS 603
E+ + + + + S++ I+E + + + K+ ++ + A+
Sbjct: 953 DESKETSDKEVSKLNSQLYTINELKK---CSESFFKKHADSSKSDSKSRKYQGLLKYEAN 1009
Query: 604 FTPFIVPNKHLFVRNPDDAWWRRYIVI 630
+ IV N L+V + DD R++++
Sbjct: 1010 YKMLIVNNNPLYVDDFDDGVLNRFLIV 1036
>gi|298482000|ref|ZP_07000189.1| AAA ATPase [Bacteroides sp. D22]
gi|295087369|emb|CBK68892.1| ATPases of the AAA+ class [Bacteroides xylanisolvens XB1A]
gi|298271864|gb|EFI13436.1| AAA ATPase [Bacteroides sp. D22]
Length = 325
Score = 43.9 bits (102), Expect = 0.11, Method: Composition-based stats.
Identities = 44/214 (20%), Positives = 67/214 (31%), Gaps = 36/214 (16%)
Query: 444 VKPTKELYITKSTGTP--FVEGEPSQEFLDL--------VSGYFESEEVMDYFTRCVGMA 493
+ P KE T VE +PS+ +L + E R
Sbjct: 60 IPPNKENVTTSLNEIENYLVELKPSKRIEELILPIHIVKLCKELVEEHYRSDLLR--SYG 117
Query: 494 LLGGNKAQRFIHIRGVGGSGKSTLMNLI-KYAFGNQYVINAEASDIM-QNRPPEAGKANP 551
L N+ I + G G+GK++L +I YVI ++ +
Sbjct: 118 LEPRNR----ILLTGAPGTGKTSLAEVIATELMLPIYVIRYDSLVGSYLGETALRMRRLF 173
Query: 552 SLIRLMGSRIVIISET-----NENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
IR IV E +D +IK++ + S+
Sbjct: 174 DFIRSR-KCIVFFDEFDTIGKERSDMHETGEIKRVVSSLLLQIDAL---------PSYNI 223
Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD 640
I H + D A WRR+ I + PI RD
Sbjct: 224 IICATNHPEL--LDRAMWRRFQ-IKLEMPIPTRD 254
>gi|294673844|ref|YP_003574460.1| hypothetical protein PRU_1134 [Prevotella ruminicola 23]
gi|294472140|gb|ADE81529.1| conserved hypothetical protein [Prevotella ruminicola 23]
Length = 759
Score = 43.9 bits (102), Expect = 0.11, Method: Composition-based stats.
Identities = 68/481 (14%), Positives = 137/481 (28%), Gaps = 69/481 (14%)
Query: 292 YHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYK-------KDKNNVYIW 344
+ I + + + + + W N +W
Sbjct: 287 KERDRAISHCYKKEALHGTWRLPGMEKPRGNVLMTLPEIRKWLSERIVCCFNILTNALLW 346
Query: 345 SLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKS 404
D + +D S P ++K NT + ++ + +
Sbjct: 347 CSRDD------IAETDGDDDDDLISSLPPLTSDKWQPVDDVEINTRMYQIELDTGKRVEE 400
Query: 405 TAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGE 464
S F++ + + L E DG +D + I + TP + +
Sbjct: 401 KHLRAVYKSDFALKVHPIRQYMKLLPEWDG-ID-RVKELSDH-----IHAVSATPDMTDK 453
Query: 465 PSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524
+QE + + VG L + G G K+ ++
Sbjct: 454 EAQEAMHWA--------FHKWMVAAVGTWLDDRVMNHCIFTLVGPQGKYKTEFF---RHL 502
Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGG 584
Q S M+NR + + + + ++ + E + + AK+K +
Sbjct: 503 LPPQL-----QSYFMENRTNSVSQKDDRIA-MQEHCVIELEEVSAFEGTELAKLKALVTA 556
Query: 585 DCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVI-------PFDKPIA 637
D + R YG E P + N+ + + RR++ PF+ I
Sbjct: 557 DKIKERPVYGRAREEKPRLASLCASTNEQQILTDATGN--RRWLCFKLSEIDSPFEWTID 614
Query: 638 NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWI 697
A +L+ +Y +G K Y + + E R
Sbjct: 615 Y--AQLYAQLQKEY--------YEGFKYY----FSKADEKRVKQLNEPFR----VISP-- 654
Query: 698 DDCCDIGENLWEESHSLAKSY-SEYREQELNYDRKR--ISTRTVTLNLKQKGFIGGIKRE 754
++ + + + + S+ LNY R S R + + + G+ KR
Sbjct: 655 EEQMIVIRLRKPKKNEPYQLMSSQMINLFLNYGRHNNFFSNRKIGDIMLELGYESMHKRN 714
Query: 755 K 755
Sbjct: 715 G 715
>gi|154500932|ref|ZP_02038970.1| hypothetical protein BACCAP_04617 [Bacteroides capillosus ATCC
29799]
gi|150270262|gb|EDM97597.1| hypothetical protein BACCAP_04617 [Bacteroides capillosus ATCC
29799]
Length = 445
Score = 43.9 bits (102), Expect = 0.11, Method: Composition-based stats.
Identities = 43/283 (15%), Positives = 77/283 (27%), Gaps = 35/283 (12%)
Query: 446 PTKELYITKSTGTPFVEGEPSQEFLDLVSGYFES----EEVMDYFTRCVGMALLGGNKAQ 501
Y+ + + E + L G E + + + A G K +
Sbjct: 108 HPIRDYL---SALVWDGTERIRFCLRHFLGADADDYTYEALKLFLLGAISRAFQPGCKFE 164
Query: 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRI 561
+ + G G+GKST L+ + +L G +
Sbjct: 165 IMLCLVGGQGAGKSTFFRLLA----------VRDEWFSDDLRKLDDD--NVYRKLQGHWM 212
Query: 562 VIISETNENDEINAAKIKQMTGGDCMTARLN--YGNTYSESP---ASFTPFIVPNKHLFV 616
+ +SE + A K + +R Y Y P F + L
Sbjct: 213 IEMSEM-----MATANAKSIEEIKSFLSRQKEVYKIPYETHPADRPRQCVFGGTSNALDF 267
Query: 617 RNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIP 676
D + RR+ IP + + + W + ++ Y S +
Sbjct: 268 LPLDRSGNRRF--IPVMVYPEQAEVHILEDEAASRAYIGQMWA-EAMEIYRSGRFKLVFS 324
Query: 677 EVCLKAKEEERQG---TDTYQAWIDDCCDIGENLWEESHSLAK 716
+ +E ++ DT I D S L K
Sbjct: 325 PAMQRYLKEHQRDFMPEDTKAGMIQAYLDKYTGSMVCSKQLYK 367
>gi|84514752|ref|ZP_01002116.1| hypothetical protein SKA53_11039 [Loktanella vestfoldensis SKA53]
gi|84511803|gb|EAQ08256.1| hypothetical protein SKA53_11039 [Loktanella vestfoldensis SKA53]
Length = 619
Score = 43.9 bits (102), Expect = 0.11, Method: Composition-based stats.
Identities = 33/206 (16%), Positives = 64/206 (31%), Gaps = 22/206 (10%)
Query: 432 QDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVG 491
++G DL + +E + +P DL+ + +G
Sbjct: 184 RNGYCDLNVWVEPSYRQE------APVDRDDAKPLGSLQDLIDFAIATPLERQILLDWLG 237
Query: 492 MALLGGN-KAQRFIHIRGVG-GSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549
+L N K + I + G+GKSTL+ L + FG N + + R
Sbjct: 238 WSLKHENLKPRWAIFLYSETKGTGKSTLLELGQALFGEANTANENGIEGLTQRFSIDS-- 295
Query: 550 NPSLIRLMGSRIVIISETNENDEINAA-KIKQMTGGDCMTARLNYGNTYSESPASFTPFI 608
+ + + + E + +A K+K G+ + + +
Sbjct: 296 -------LSKKFIKVEEVKLSSHSDAGNKMKDYITGETAMLDVKNLSK-QTIRLKCAFML 347
Query: 609 VPNKHLFVRNPDDAWWRRYIVIPFDK 634
N + RRY +I +
Sbjct: 348 TTNHKP---TWLEGGERRYFLIDMNH 370
>gi|221055435|ref|XP_002258856.1| transporter [Plasmodium knowlesi strain H]
gi|193808926|emb|CAQ39629.1| transporter, putative [Plasmodium knowlesi strain H]
Length = 2518
Score = 43.9 bits (102), Expect = 0.11, Method: Composition-based stats.
Identities = 25/127 (19%), Positives = 41/127 (32%), Gaps = 32/127 (25%)
Query: 438 LETG---QKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMAL 494
L TG + + + V+ + + + V + L
Sbjct: 744 LRTGRATEFRRHRPAD---------------CYLVIKNVNKTYG----RKHVLKNVSLTL 784
Query: 495 LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF----GNQYVINAEASD--IMQNRPPEAGK 548
++ R + G GSGKSTL+N+I G + I + S I NR +
Sbjct: 785 ----RSNRIFVLLGENGSGKSTLINIITEMITEDQGEIHFIKRDRSSPGITTNRRNRSSS 840
Query: 549 ANPSLIR 555
L R
Sbjct: 841 PLEKLTR 847
>gi|288871209|ref|ZP_06116741.2| putative virulence-associated protein E [Clostridium hathewayi DSM
13479]
gi|288864378|gb|EFC96676.1| putative virulence-associated protein E [Clostridium hathewayi DSM
13479]
Length = 776
Score = 43.9 bits (102), Expect = 0.12, Method: Composition-based stats.
Identities = 39/208 (18%), Positives = 64/208 (30%), Gaps = 25/208 (12%)
Query: 462 EGEPSQEFLDLVSGYFESEE-------VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGK 514
+ + + L+S Y +E+ + V A+ GG K G G GK
Sbjct: 453 KWDGVKRVDTLLSEYLGAEDTPYTRAVMRKSLCAAVARAVEGGVKYDYMPIFTGPQGLGK 512
Query: 515 STLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEIN 574
S+ +N G S + GK LI+ G+ I + E
Sbjct: 513 SSFLN----ILGK--------SWFSDSLTSFEGKEAAELIQ--GTWINEVGELTAMTRQE 558
Query: 575 AAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK 634
+ +KQ R YG P F N F+++ RR+ +
Sbjct: 559 TSAVKQFLSKREDIYRAAYGRRTERYPRRCVFFGTSNDSEFLKDNTGN--RRFWPVDVGV 616
Query: 635 PIANRDA--SFAQKLETKYTLEAKKWFL 660
A R +++ + W L
Sbjct: 617 HPAKRSVWNDLPAEVDQIWAEAYMYWAL 644
>gi|119953769|ref|YP_950574.1| hypothetical protein [Streptococcus phage SMP]
gi|118430581|gb|ABK91905.1| unknown [Streptococcus phage SMP]
Length = 413
Score = 43.9 bits (102), Expect = 0.12, Method: Composition-based stats.
Identities = 42/291 (14%), Positives = 91/291 (31%), Gaps = 50/291 (17%)
Query: 459 PFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRF---------IHIRGV 509
+ + + + + +E+ + Y + M +G + F + + G
Sbjct: 86 AYDSWDHKERLNQVFQTWLGAEDSI-YVQKIAEMFFVGAVS-KVFNPWVKFDYTLDLVGG 143
Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISE--- 566
G+GK+T + I + Y +A D M +M +++ +
Sbjct: 144 QGAGKTTFLQKIAV---DWYTDSA--KDFMDK----------DNYEIMLKSLIVNDDEMV 188
Query: 567 TNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRR 626
+ + +K +T R +YG + P +F NK ++ + RR
Sbjct: 189 ASRKTTFDE--LKAFVTKTDLTFRRSYGRRAEKFPKNFVIARTSNKVEYLGDKTG--ERR 244
Query: 627 YIVI------PFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCL 680
++ + F KP D Q EA + KG + + ++
Sbjct: 245 FLPVLVDAAKQFVKPFDMTDNDVLQ-----LWGEAVAIYKKGFTLTFDEDFENEL--AVY 297
Query: 681 KAKEEERQG-TDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDR 730
K + R + ++D + WE + + + R
Sbjct: 298 KERFTYRDEAENQIYDYLD---MLVPEEWESMSVVQQHQYTWAYFNNGVYR 345
>gi|157786109|gb|ABV74214.1| helicase [Samia cynthia nucleopolyhedrovirus]
Length = 1212
Score = 43.9 bits (102), Expect = 0.12, Method: Composition-based stats.
Identities = 24/130 (18%), Positives = 50/130 (38%), Gaps = 12/130 (9%)
Query: 502 RFIHIRGVGGSGKSTLMNLIK-YAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSR 560
+ +++ GV SGKST L+ +++ + + E K N L
Sbjct: 901 KAVYLPGVPLSGKSTFFELLDFLVLMHKFDDETHTGESRETSDKEVSKLNSQLY------ 954
Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
I+E + + + K+ + + + A++ IV N L+V + D
Sbjct: 955 --TINELKK---CSESFFKKHADSNKCDTKSRKYQGLLKYEANYKMLIVNNNPLYVDDYD 1009
Query: 621 DAWWRRYIVI 630
D R++++
Sbjct: 1010 DGVQNRFLIV 1019
>gi|123155897|ref|XP_001278333.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121824857|gb|EAX65403.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 211
Score = 43.9 bits (102), Expect = 0.12, Method: Composition-based stats.
Identities = 37/209 (17%), Positives = 67/209 (32%), Gaps = 19/209 (9%)
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGN 595
M N GK N S+ + +++ +E D +N+ +K + Y +
Sbjct: 1 MTNLENICGKFNSSIENMK---LIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKD 57
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
+ + N D RRY+V+ +D + L T +
Sbjct: 58 QRVCENVANFIMVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDI 113
Query: 656 KKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
+ IP + E + Y+ +ID+ + + SL
Sbjct: 114 YNHLFSYFMTLDISKFNPRQIPHTEERQTLLEANKS-VYELFIDET----DFECLDERSL 168
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLK 743
SY +Y ++ Y S RT N+K
Sbjct: 169 YDSYKQYCQE---YGYMTASKRTFLANVK 194
>gi|297803328|ref|XP_002869548.1| hypothetical protein ARALYDRAFT_492017 [Arabidopsis lyrata subsp.
lyrata]
gi|297315384|gb|EFH45807.1| hypothetical protein ARALYDRAFT_492017 [Arabidopsis lyrata subsp.
lyrata]
Length = 398
Score = 43.9 bits (102), Expect = 0.12, Method: Composition-based stats.
Identities = 32/161 (19%), Positives = 54/161 (33%), Gaps = 17/161 (10%)
Query: 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSR 560
Q+ + + G G+GK+ L I G + IN S++M +A K ++ L
Sbjct: 119 QKGVLLYGPPGTGKTMLAKAIAKESGAVF-INVRVSNLMSKWFGDAQKLVSAVFSLAYKL 177
Query: 561 ---IVIISETNE--NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLF 615
I+ I E + A + +S P + +
Sbjct: 178 QPAIIFIDEVESFLGQRRSTDHEAMANMKTEFMALW---DGFSTDPHARVMVLAATNRP- 233
Query: 616 VRNPDDAWWRRYIVIP--FDKPIANRDASFAQKLETKYTLE 654
D+A RR P F+ I +R A+ L+ E
Sbjct: 234 -SELDEAILRRL---PQAFEIGIPDR-RERAEILKVTLKGE 269
>gi|242004405|ref|XP_002423081.1| rfx5, putative [Pediculus humanus corporis]
gi|212506012|gb|EEB10343.1| rfx5, putative [Pediculus humanus corporis]
Length = 962
Score = 43.9 bits (102), Expect = 0.12, Method: Composition-based stats.
Identities = 14/75 (18%), Positives = 27/75 (36%), Gaps = 5/75 (6%)
Query: 696 WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755
WI + + + Y +Y E N K +ST +KQ G++ +
Sbjct: 19 WIKTHLEEDSEISIPKQDVYDQYLKYCE---NVTMKPLSTADFGKVMKQ--VYPGVRPRR 73
Query: 756 IEKEWKSKRIIKGLK 770
+ S+ G++
Sbjct: 74 LGTRGNSRYCYSGMR 88
>gi|15234242|ref|NP_194498.1| MSP1 protein, putative / intramitochondrial sorting protein,
putative [Arabidopsis thaliana]
gi|4469019|emb|CAB38280.1| putative protein [Arabidopsis thaliana]
gi|7269622|emb|CAB81418.1| putative protein [Arabidopsis thaliana]
gi|20260328|gb|AAM13062.1| putative protein [Arabidopsis thaliana]
gi|21553404|gb|AAM62497.1| 26S proteasome regulatory particle chain RPT6-like protein
[Arabidopsis thaliana]
gi|23197836|gb|AAN15445.1| putative protein [Arabidopsis thaliana]
gi|110740771|dbj|BAE98483.1| hypothetical protein [Arabidopsis thaliana]
gi|332659980|gb|AEE85380.1| 26S proteasome regulatory particle chain RPT6-like protein
[Arabidopsis thaliana]
Length = 398
Score = 43.9 bits (102), Expect = 0.12, Method: Composition-based stats.
Identities = 32/161 (19%), Positives = 54/161 (33%), Gaps = 17/161 (10%)
Query: 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSR 560
Q+ + + G G+GK+ L I G + IN S++M +A K ++ L
Sbjct: 119 QKGVLLYGPPGTGKTMLAKAIAKESGAVF-INVRVSNLMSKWFGDAQKLVSAVFSLAYKL 177
Query: 561 ---IVIISETNE--NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLF 615
I+ I E + A + +S P + +
Sbjct: 178 QPAIIFIDEVESFLGQRRSTDHEAMANMKTEFMALW---DGFSTDPHARVMVLAATNRP- 233
Query: 616 VRNPDDAWWRRYIVIP--FDKPIANRDASFAQKLETKYTLE 654
D+A RR P F+ I +R A+ L+ E
Sbjct: 234 -SELDEAILRRL---PQAFEIGIPDR-RERAEILKVTLKGE 269
>gi|300941012|ref|ZP_07155533.1| nucleoside triphosphatase, D5 family [Escherichia coli MS 21-1]
gi|300454227|gb|EFK17720.1| nucleoside triphosphatase, D5 family [Escherichia coli MS 21-1]
Length = 177
Score = 43.6 bits (101), Expect = 0.12, Method: Composition-based stats.
Identities = 23/137 (16%), Positives = 45/137 (32%), Gaps = 17/137 (12%)
Query: 619 PDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIP 676
RR ++I F + IA RD K+ + + + K +++ L
Sbjct: 1 RGGGVSRRRVIIHFPEQIAPQERDPQLKDKITRELAVIVRHLMQKFSDPMLARSLLQSQ- 59
Query: 677 EVCLKAKEEERQGTDTYQAWID--DCCDIGENLWEESHS---------LAKSYSEYREQE 725
+ +A ++ D +I + ++ + S L +Y Y E
Sbjct: 60 QNSDEALNI-KRDADPTFDFIGYLETLPQTSGMYMGNASIIPRNYRKYLYHAYLAYMEAN 118
Query: 726 LNYDRKRISTRTVTLNL 742
R +S + L L
Sbjct: 119 G--YRNVLSLKMFGLGL 133
>gi|183596365|ref|ZP_02958393.1| hypothetical protein PROSTU_00111 [Providencia stuartii ATCC 25827]
gi|188023826|gb|EDU61866.1| hypothetical protein PROSTU_00111 [Providencia stuartii ATCC 25827]
Length = 59
Score = 43.6 bits (101), Expect = 0.12, Method: Composition-based stats.
Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 1/54 (1%)
Query: 584 GDCMTARLNYGNTYSESPASFTPFIVPNKHLFV-RNPDDAWWRRYIVIPFDKPI 636
GD + AR YG E + F+ I+ N + RR +IPF
Sbjct: 1 GDIIVARQVYGKHEVEFQSQFSLVILGNHKHVIYEYVSTVCGRRMCLIPFAANF 54
>gi|292397767|ref|YP_003517833.1| helicase [Lymantria xylina MNPV]
gi|291065484|gb|ADD73802.1| helicase [Lymantria xylina MNPV]
Length = 1213
Score = 43.6 bits (101), Expect = 0.12, Method: Composition-based stats.
Identities = 41/201 (20%), Positives = 72/201 (35%), Gaps = 25/201 (12%)
Query: 494 LLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL 553
+ G+ + +I G +GKS+ L++ F + S + + + +AN +
Sbjct: 907 AIPGDYEKLANYIIGEANAGKSSNNELMENIF--VVHKHDADSYTLSKKETDEMEANKLI 964
Query: 554 IRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTA-RLNYGNTYSESPASFTPFIVPNK 612
+L +I+E E N + K A Y ++ A++ IV NK
Sbjct: 965 SQLY-----VINEMKE---CNDSFFKNSADSTKSNAVCRKYQSSQKYE-ANYKLQIVNNK 1015
Query: 613 HLFVRNPDDAWWRRYIVI----------PFDKPIANRDASFAQKLETKYTLEA---KKWF 659
LF+ D A R+ V+ PF + + + LE Y + F
Sbjct: 1016 PLFIVGYDKAVRNRFAVVYIDHVYEENLPFSGSVYSHIKNKRYPLEKGYYEGLVTPVRLF 1075
Query: 660 LKGVKAYISKGLDVDIPEVCL 680
L + Y D +P L
Sbjct: 1076 LAHILMYRRNPKDGYVPYRML 1096
>gi|253578304|ref|ZP_04855576.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251850622|gb|EES78580.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 445
Score = 43.6 bits (101), Expect = 0.13, Method: Composition-based stats.
Identities = 43/284 (15%), Positives = 77/284 (27%), Gaps = 37/284 (13%)
Query: 446 PTKELYITKSTGTPFVEGEPSQEF--LDLVSGYFES---EEVMDYFTRCVGMALLGGNKA 500
Y++ +G F + + E + + + A G K
Sbjct: 108 HPIRDYLSSLV----WDGTERIRFCLRHFLGADTDDYTYEALKLFLLGAISRAFQPGCKF 163
Query: 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSR 560
+ + + G G+GKST L+ + +L G
Sbjct: 164 EIMLCLVGGQGAGKSTFFRLLA----------VRDEWFSDDLRKLDDD--NVYRKLQGHW 211
Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLN--YGNTYSESP---ASFTPFIVPNKHLF 615
I+ +SE + A K + +R Y Y P F + L
Sbjct: 212 IIEMSEM-----MATANAKSIEEIKSFLSRQKEVYKIPYETHPADRPRQCVFGGTSNALD 266
Query: 616 VRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDI 675
D + RR+ IP + + + W + ++ Y S +
Sbjct: 267 FLPLDRSGNRRF--IPVMVYPEQAEVHILEDEAASRAYIGQMWA-EAMEIYRSGRFKLAF 323
Query: 676 PEVCLKAKEEERQG---TDTYQAWIDDCCDIGENLWEESHSLAK 716
+ +E ++ DT I D S L K
Sbjct: 324 SPAMQRYLKEHQRDFMPEDTKAGMIQAYLDKYTGSMVCSKQLYK 367
>gi|123188240|ref|XP_001281798.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121837379|gb|EAX68868.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 211
Score = 43.6 bits (101), Expect = 0.13, Method: Composition-based stats.
Identities = 38/209 (18%), Positives = 67/209 (32%), Gaps = 19/209 (9%)
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDE---INAAKIKQMTGGDCMTARLNYGN 595
M N GK N S+ + +++ +E D +N+ +K + Y +
Sbjct: 1 MTNLENICGKFNSSIENMK---LIVCNELQSIDTTKILNSDALKSLITDKVGVVERKYKD 57
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
+ + N D RRY+V+ +D + L T E
Sbjct: 58 QRVCENVANFIMVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTPEF 113
Query: 656 KKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
+ IP + E + Y+ +ID+ + + SL
Sbjct: 114 YNHLFSYFMTLDISKFNPRQIPHTEERQTLLEANKS-VYELFIDET----DFECLDERSL 168
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLK 743
SY +Y ++ Y S RT N+K
Sbjct: 169 YDSYKQYCQE---YGYMTASKRTFLANVK 194
>gi|239942767|ref|ZP_04694704.1| hypothetical protein SrosN15_17369 [Streptomyces roseosporus NRRL
15998]
gi|239989226|ref|ZP_04709890.1| hypothetical protein SrosN1_18136 [Streptomyces roseosporus NRRL
11379]
gi|291446237|ref|ZP_06585627.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
15998]
gi|291349184|gb|EFE76088.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
15998]
Length = 303
Score = 43.6 bits (101), Expect = 0.13, Method: Composition-based stats.
Identities = 20/96 (20%), Positives = 26/96 (27%), Gaps = 9/96 (9%)
Query: 51 ACGFGFVCGVGEQPLYAFDIDS-----KDEKTANTFKDTFEILHGTPIVRIGQKPKILIP 105
A G+G CG L D+D D A + + L P P
Sbjct: 81 ATGYGIACGRAPHRLIGIDLDVDPAYGSDAAGALR-QLALQHLFTIPPTVTVLTPSGGRH 139
Query: 106 FRMNKEGIK--KKKTTESTQGHLDILGCGQYFVAYN 139
+ G +DI G G Y V
Sbjct: 140 LWLTGPADATVPNSAGRLAPG-IDIRGTGGYLVGPG 174
>gi|123314487|ref|XP_001291835.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121866468|gb|EAX78905.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 211
Score = 43.6 bits (101), Expect = 0.13, Method: Composition-based stats.
Identities = 37/210 (17%), Positives = 67/210 (31%), Gaps = 19/210 (9%)
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGN 595
M N GK N S+ + +++ +E D +N+ +K + Y +
Sbjct: 1 MTNLENICGKFNSSIENMK---LIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKD 57
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
+ + N D RRY+V+ +D + L T +
Sbjct: 58 QRVCENVANFIMVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDF 113
Query: 656 KKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
+ IP + E + Y+ +ID+ + + SL
Sbjct: 114 YNHLFSYFMTLDISKFNPRQIPHTEERQTLLEANKS-VYELFIDETDFVSLDER----SL 168
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLKQ 744
SY +Y ++ Y S RT N+K
Sbjct: 169 YDSYKQYCQE---YGYMTASKRTFLANVKN 195
>gi|15741130|gb|AAL06737.1|AF349909_3 putative replication protein E1 [Human papillomavirus type 86]
Length = 652
Score = 43.6 bits (101), Expect = 0.13, Method: Composition-based stats.
Identities = 22/158 (13%), Positives = 53/158 (33%), Gaps = 19/158 (12%)
Query: 477 FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEAS 536
F+ E + + + L G + + G +GKS + G + ++
Sbjct: 447 FQGIEFISFM-EALKQFLKG-TPKKSCLVFYGPSDTGKSLFCMSLLRYLGGAVISFVNST 504
Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK-IKQMTGGDCMTARLNYGN 595
+ L L+ ++I ++ + + + ++ + G+ M+ + N
Sbjct: 505 S------------HFWLSPLVDAKIGLLDDATQQCWVYIDTYLRTVLDGNTMSIDRKHKN 552
Query: 596 TYS-ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF 632
+ P I N ++ + R +V PF
Sbjct: 553 LQQLKCPP---LMITTNVNIAADDTFKYLRSRMVVFPF 587
>gi|323524488|ref|YP_004226641.1| AAA ATPase central domain-containing protein [Burkholderia sp.
CCGE1001]
gi|323381490|gb|ADX53581.1| AAA ATPase central domain protein [Burkholderia sp. CCGE1001]
Length = 321
Score = 43.6 bits (101), Expect = 0.13, Method: Composition-based stats.
Identities = 47/278 (16%), Positives = 89/278 (32%), Gaps = 50/278 (17%)
Query: 421 LLDSSSRFLGEQDGILDLETGQKVKPTKELY--ITKSTGTPF-VEGEPSQEFLDLVSGYF 477
LD L DL G + Y + K+ F V+ DL+
Sbjct: 16 DLDQVETALN------DLGEG-ANDALRTTYEKMLKTGNLRFCVKPNRMPSIDDLIGALP 68
Query: 478 ESEEVMDYFTRCVGMALLGGNKAQRFIHIR-GVGGSGKSTLMNLIKYAFGNQYVINAEAS 536
+ +D + V + L ++ + + G G GK+ + G Y A +S
Sbjct: 69 NFADPLDDIRKQVALCLETEDRLELMPILLLGDPGIGKTHFAKQLARLLGTAYQYVAMSS 128
Query: 537 DI---------MQNRPPEAGKANPSLIRLMGSRIVI-ISETNENDEINA----AKIKQMT 582
Q + + GK +L+ + VI + E ++ + + +
Sbjct: 129 LTAGWILSGASSQWKNAKPGKVFDALVNGSYANPVITVDEIDKATGDSQYDPLGALYALL 188
Query: 583 GGDCMTARLNYGNTYSESP--ASFTPFIVP-NKHLFVRNPDDAWWRRYIVIPFDKPIANR 639
D + + ++E P A +I N + + R V ++ P +R
Sbjct: 189 EHDTAQT---FIDEFAEIPINAGHVIWIATANDERSIP---EPILNRMNV--YEIPPPDR 240
Query: 640 D--ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDI 675
D AQ + T+ ++G + GL
Sbjct: 241 DGARRIAQSIYTE---------IRGAHTW---GLRFPE 266
>gi|166064279|gb|ABY79076.1| non-structural protein 1 [Penaeus monodon hepatopancreatic
parvovirus]
Length = 578
Score = 43.6 bits (101), Expect = 0.13, Method: Composition-based stats.
Identities = 24/128 (18%), Positives = 45/128 (35%), Gaps = 19/128 (14%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVI 563
+ + G SGK+ L+ + + IM N ++ + S IV+
Sbjct: 394 MMLYGNSNSGKTQLIEALTGLV---------NTAIMTNVGDGGTFHFSNITEM--STIVV 442
Query: 564 ISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPN-KHLFVR----N 618
+ET + + K + GG+ +T + Y ++ P + N H V +
Sbjct: 443 GNETKIRTQTIE-QWKGLCGGENVTMPMKYKEH--KTHMFRKPVFLTNQHHPLVDISHYD 499
Query: 619 PDDAWWRR 626
A R
Sbjct: 500 DRRAIENR 507
>gi|297583088|ref|YP_003698868.1| virulence-associated E family protein [Bacillus selenitireducens
MLS10]
gi|297141545|gb|ADH98302.1| virulence-associated E family protein [Bacillus selenitireducens
MLS10]
Length = 783
Score = 43.6 bits (101), Expect = 0.13, Method: Composition-based stats.
Identities = 35/194 (18%), Positives = 61/194 (31%), Gaps = 20/194 (10%)
Query: 496 GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIR 555
G K + G G GKST++ + + Y +D+ E +
Sbjct: 498 PGTKFDSVPVLDGDQGIGKSTIVKDL--VTPDFYSEALSLTDMDDKSGAE---------K 546
Query: 556 LMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPN---- 611
L G +V I E + + K+K R +YG P N
Sbjct: 547 LQGFWVVEIGELAGMKKADIEKVKAFLSTSDDKYRPSYGRVVESHPRQCIIIATVNGERG 606
Query: 612 KHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGL 671
+ RR+ +I + + F ++ ++ EAK + G K Y+ +
Sbjct: 607 YLRDITGN-----RRFWIIKLHQKKQKKSWHFTEEFRQQFWAEAKAIWEAGEKLYLEGDV 661
Query: 672 DVDIPEVCLKAKEE 685
+ A E
Sbjct: 662 LEAAEQAQKGALEA 675
>gi|291010736|gb|ADD71724.1| DNA helicase [Leuconostoc phage 1-A4]
Length = 450
Score = 43.6 bits (101), Expect = 0.14, Method: Composition-based stats.
Identities = 33/165 (20%), Positives = 59/165 (35%), Gaps = 23/165 (13%)
Query: 469 FLDLVSGYFESEEVMDYFTRCVGMALL-----GGNKAQRFIHIRGVGGSGKSTLMNLIKY 523
F+D + E E+ TR L+ K + + G G GK+T+ +
Sbjct: 170 FIDYLGA--EDNELTVKMTRAFFAGLVHKVKNPNVKFDLVLDLVGGQGIGKTTMFEKLG- 226
Query: 524 AFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTG 583
G+ Y + + LI + + IV E +D+ + + +K
Sbjct: 227 --GDYYTDSI--TSFTDKDS---------LIEMSKNLIVNDDEMAISDKTDFSTLKSFIT 273
Query: 584 GDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYI 628
M R+ Y T + P F N + ++R+ RR+I
Sbjct: 274 KRTMNIRVPYAETSKDYPKGFVLVRTTNNNEYLRDKTGN--RRFI 316
>gi|1742981|emb|CAA71181.1| helicase [Bombyx mori NPV]
Length = 1222
Score = 43.6 bits (101), Expect = 0.14, Method: Composition-based stats.
Identities = 24/154 (15%), Positives = 60/154 (38%), Gaps = 9/154 (5%)
Query: 485 YFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544
+ + ++ I++ G GSGKS+ L+ Y++ D +
Sbjct: 895 MLMHFAASLAIPVDYGKKAIYMPGEPGSGKSSFFELL------DYLVLMHKFDDDNHSGE 948
Query: 545 EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604
+ + + + S++ +I+E + + + K+ ++ + A++
Sbjct: 949 SNKETSDKEVSKLNSQLYVINELKQ---CSESYFKKHADTSKSDSKSRKYQGLLKYEANY 1005
Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN 638
IV NK L+V + DD R++++ + +
Sbjct: 1006 KMLIVNNKPLYVDDYDDGVQDRFLIVYTNHKFVD 1039
>gi|328793580|ref|XP_001120516.2| PREDICTED: hypothetical protein LOC724622 [Apis mellifera]
Length = 1149
Score = 43.6 bits (101), Expect = 0.14, Method: Composition-based stats.
Identities = 12/83 (14%), Positives = 29/83 (34%), Gaps = 5/83 (6%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
WI + ++ + Y+ Y + K +ST +KQ ++
Sbjct: 119 MWIKTHLEEDPDVSLPKQEVYDEYNMYCMRN---SMKPLSTADFGKVMKQ--VYPRVRPR 173
Query: 755 KIEKEWKSKRIIKGLKLKPAFES 777
++ S+ G++ + +S
Sbjct: 174 RLGTRGNSRYCYAGMRKRVKLDS 196
>gi|123447869|ref|XP_001312670.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121894525|gb|EAX99740.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 211
Score = 43.6 bits (101), Expect = 0.14, Method: Composition-based stats.
Identities = 36/210 (17%), Positives = 66/210 (31%), Gaps = 19/210 (9%)
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGN 595
M N GK N S+ + +++ +E D +N+ +K + Y +
Sbjct: 1 MTNLENICGKFNSSIENMK---LIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKD 57
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
+ + N D RRY+V+ +D + L T
Sbjct: 58 QRVCENVANFIMVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTPNF 113
Query: 656 KKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
+ IP + E + Y+ +I++ + + SL
Sbjct: 114 YNHLFSYFMTLDISKFNPRQIPHTEERQTLLEANKS-VYELFIEESDFVSLDER----SL 168
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLKQ 744
SY +Y ++ Y S RT N+K
Sbjct: 169 YDSYKQYCQE---YGYMTASKRTFLANVKN 195
>gi|297180892|gb|ADI17096.1| hypothetical protein [uncultured gamma proteobacterium
HF0070_03O15]
Length = 328
Score = 43.6 bits (101), Expect = 0.15, Method: Composition-based stats.
Identities = 40/243 (16%), Positives = 76/243 (31%), Gaps = 66/243 (27%)
Query: 208 REITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYD------ 261
R + A S G + N H W + +++E G +G E+ R WSK+ Y+
Sbjct: 2 RLLVAAWSVIGHKGPNQEH-YWWEIGAMINNELPGI-EGLELWREWSKKDPDYEHCWEDG 59
Query: 262 EENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKK 321
E+ +W + Y+ LI LA R
Sbjct: 60 EDPCAARWYATWRNDGAR------------YNMAHLID---LADRV-------------- 90
Query: 322 GHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPE-----DN 376
D + + LDK+ + + KE+V D + + DN
Sbjct: 91 ---------------DPDRKRFKQVGLDKLIEDVEAIPLRYKEEVLDGEDLIQRYMDIDN 135
Query: 377 NKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIF-------SITSDLLDSSS--R 427
+ +++P ++ + A + ++ +F + D LD +
Sbjct: 136 DPKNENPALHNQAVHKLAIEAKRGNAAEIERLVDTHEMFNRTKGQKPLAIDELDDTPFEY 195
Query: 428 FLG 430
+
Sbjct: 196 LIP 198
>gi|154333715|ref|XP_001563114.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904]
gi|134060124|emb|CAM37437.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 580
Score = 43.6 bits (101), Expect = 0.15, Method: Composition-based stats.
Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 3/63 (4%)
Query: 208 REITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGS-TYDEENFN 266
+ +TA L ++D W+ V +A+H+ E +S + Y E
Sbjct: 493 KSVTAKLRTLPPRAAE-TYDVWVRVGLALHN-FSNEDHVFEEWVLFSLKSPLKYSREVCR 550
Query: 267 YKW 269
KW
Sbjct: 551 KKW 553
>gi|123195938|ref|XP_001283419.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121842841|gb|EAX70489.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 194
Score = 43.6 bits (101), Expect = 0.15, Method: Composition-based stats.
Identities = 31/189 (16%), Positives = 60/189 (31%), Gaps = 16/189 (8%)
Query: 560 RIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV 616
++++ +E D +N+ +K + Y + + + N
Sbjct: 2 KLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMK 61
Query: 617 RNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-I 675
D RRY+V+ +D + L T + + I
Sbjct: 62 LESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQI 117
Query: 676 PEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIST 735
P + E + Y+ +ID+ + + SL SY +Y ++ Y S
Sbjct: 118 PHTEERQTLLEANKS-VYELFIDETNFVSLDER----SLYDSYKQYCQE---YGYMAASK 169
Query: 736 RTVTLNLKQ 744
RT N+K
Sbjct: 170 RTFLANVKN 178
>gi|284504212|ref|YP_003406927.1| helicase origin-binding-protein [Marseillevirus]
gi|282935650|gb|ADB03965.1| helicase origin-binding-protein [Marseillevirus]
Length = 1173
Score = 43.6 bits (101), Expect = 0.15, Method: Composition-based stats.
Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Query: 220 EFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDT 271
+ + +W V + T+ G E+ R +S + YDE F+ W +
Sbjct: 400 DERRKDYSKWCEVAFFIFGITKDLEVGAELLREFSMESDGYDERRFDE-WIS 450
>gi|167771755|ref|ZP_02443808.1| hypothetical protein ANACOL_03127 [Anaerotruncus colihominis DSM
17241]
gi|167666395|gb|EDS10525.1| hypothetical protein ANACOL_03127 [Anaerotruncus colihominis DSM
17241]
Length = 445
Score = 43.6 bits (101), Expect = 0.15, Method: Composition-based stats.
Identities = 41/280 (14%), Positives = 78/280 (27%), Gaps = 29/280 (10%)
Query: 446 PTKELYITKSTGTPFVEGEPSQEF--LDLVSGYFES---EEVMDYFTRCVGMALLGGNKA 500
Y++ +G F + + E + + + A G K
Sbjct: 108 HPIRDYLSSLV----WDGTERIRFCLRHFLGADADDYTYEALKLFLMGAISRAFQPGCKF 163
Query: 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSR 560
+ + + G G+GKST L+ + +L G
Sbjct: 164 EIMLCLVGGQGAGKSTFFRLLA----------VRDEWFSDDLRKLDDD--NVYRKLQGHW 211
Query: 561 IVIISETNENDE-INAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNP 619
I+ +SE + +IK ++ Y ++ P N F+
Sbjct: 212 IIEMSEMMATTNAKSIEEIKSFLSRQKEVYKIPYETHPADRPRQCVFGGTSNALDFLP-L 270
Query: 620 DDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVC 679
D + RR+ IP + + + W + ++ Y S +
Sbjct: 271 DRSGNRRF--IPVMVYPEQAEVHILEDEAASRAYIEQMWA-EAMEIYRSGRFKLAFSPAM 327
Query: 680 LKAKEEERQG---TDTYQAWIDDCCDIGENLWEESHSLAK 716
+ +E ++ DT I D S L K
Sbjct: 328 QRYLKEHQRDFMPEDTKAGMIQAYLDKYTGSMVCSKQLYK 367
>gi|223994709|ref|XP_002287038.1| 26S proteasome regulatory particle chain rpt6-like protein
[Thalassiosira pseudonana CCMP1335]
gi|220978353|gb|EED96679.1| 26S proteasome regulatory particle chain rpt6-like protein
[Thalassiosira pseudonana CCMP1335]
Length = 271
Score = 43.6 bits (101), Expect = 0.15, Method: Composition-based stats.
Identities = 45/225 (20%), Positives = 79/225 (35%), Gaps = 46/225 (20%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYV--INAEASDIMQNRPPEAGK---ANPSLIRLMG 558
I + G G+GK+ L I + +N + S IM E+ K A +L R +
Sbjct: 52 ILLYGPPGTGKTMLAKAIAK---ESHATFVNVQLSSIMNKWFGESNKLISATFNLARKLA 108
Query: 559 SRIVIISETN---------ENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609
+V I E + E +N+ K + +T D + + P+ +
Sbjct: 109 PSVVFIDEMDAFLSQRDGTEGSAVNSMKSEFLTLWDGLLSERK-----IVLPSPPIIVLG 163
Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISK 669
+ + D A RR + ++ +L+ FL+ K +++
Sbjct: 164 ATNRPY--DVDPAILRRL-----PRSFEISLPDYSSRLQ------LLNLFLE--KQRMTE 208
Query: 670 GLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
+ IP V KA E G+D + + C WE L
Sbjct: 209 EAKMFIPTVAQKA-EGY-SGSD-----LKELCRAA--AWEPVREL 244
>gi|123182765|ref|XP_001280745.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121833665|gb|EAX67815.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 211
Score = 43.6 bits (101), Expect = 0.15, Method: Composition-based stats.
Identities = 37/210 (17%), Positives = 66/210 (31%), Gaps = 19/210 (9%)
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGN 595
M N GK N S+ + +++ +E D +N+ +K + Y +
Sbjct: 1 MTNLENICGKFNSSIENMK---LIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKD 57
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
+ + N D RRY+V+ +D + L T
Sbjct: 58 QRVCENVANFIMVSNNAVPMKLESSD---RRYVVVR-TSEAHMQDTEYFDDLAETLTPNF 113
Query: 656 KKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
+ IP + E + Y+ +ID+ + + SL
Sbjct: 114 YNHLFSYFMTLDISKFNPRQIPHTEERQTLLEANKS-VYELFIDET----DFECLDERSL 168
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLKQ 744
SY +Y ++ Y S RT N+K
Sbjct: 169 YDSYKQYCQE---YGYMAASKRTFLANVKN 195
>gi|257879419|ref|ZP_05659072.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
gi|257813647|gb|EEV42405.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
Length = 445
Score = 43.6 bits (101), Expect = 0.16, Method: Composition-based stats.
Identities = 44/285 (15%), Positives = 79/285 (27%), Gaps = 38/285 (13%)
Query: 445 KPTKELYITKSTGTPFVEGEPSQEF--LDLVSGYFES---EEVMDYFTRCVGMALLGGNK 499
P ++ T +G F + + E + + + A G K
Sbjct: 108 HPIRDYLSTLV-----WDGTERIRFCLRHFLGADADDYTYEALKLFLLGAISRAFQPGCK 162
Query: 500 AQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGS 559
+ + + G G+GKST L+ + +L G
Sbjct: 163 FEIMLCLVGGQGAGKSTFFRLLA----------VRDEWFSDDLRKLDDD--NVYRKLQGH 210
Query: 560 RIVIISETNENDEINAAKIKQMTGGDCMTARLN--YGNTYSESP---ASFTPFIVPNKHL 614
I+ +SE + A K + +R Y Y P F + L
Sbjct: 211 WIIEMSEM-----MATANAKSIEEIKSFLSRQKEVYKIPYETHPADRPRQCVFGGTSNAL 265
Query: 615 FVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD 674
D + RR+ IP + ++ + W + ++ Y S +
Sbjct: 266 DFLPLDRSGNRRF--IPVMVYPEQAEVHILEEESASRAYIGQMWA-EAMEIYRSGRFKLA 322
Query: 675 IPEVCLKAKEEERQG---TDTYQAWIDDCCDIGENLWEESHSLAK 716
+ +E ++ DT I D S L K
Sbjct: 323 FSPAMQRYLKEHQRDFMPEDTKAGMIQAYLDKYTGSMVCSKQLYK 367
>gi|160945797|ref|ZP_02093023.1| hypothetical protein FAEPRAM212_03330 [Faecalibacterium prausnitzii
M21/2]
gi|158443528|gb|EDP20533.1| hypothetical protein FAEPRAM212_03330 [Faecalibacterium prausnitzii
M21/2]
Length = 445
Score = 43.6 bits (101), Expect = 0.16, Method: Composition-based stats.
Identities = 42/284 (14%), Positives = 77/284 (27%), Gaps = 37/284 (13%)
Query: 446 PTKELYITKSTGTPFVEGEPSQEF--LDLVSGYFES---EEVMDYFTRCVGMALLGGNKA 500
Y++ +G F + + E + + + A G K
Sbjct: 108 HPIRDYLSSLV----WDGTERIRFCLRHFLGADADDYTYEALKLFLMGAISRAFQPGCKF 163
Query: 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSR 560
+ + + G G+GKST L+ + +L G
Sbjct: 164 EIMLCLVGGQGAGKSTFFRLLA----------VRDEWFSDDLRKLDDD--NVYRKLQGHW 211
Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLN--YGNTYSESP---ASFTPFIVPNKHLF 615
++ +SE + A K + +R Y Y P F + L
Sbjct: 212 MIEMSEM-----MATANAKSIEEIKSFLSRQKEVYKIPYETHPADRPRQCVFGGTSNALD 266
Query: 616 VRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDI 675
D + RR+ IP + + + W + ++ Y S +
Sbjct: 267 FLPLDRSGNRRF--IPVMVYPEQAEVHILEDEAASRAYIEQMWA-EAMEIYRSGRFKLAF 323
Query: 676 PEVCLKAKEEERQG---TDTYQAWIDDCCDIGENLWEESHSLAK 716
+ +E ++ DT I D S L K
Sbjct: 324 SPTMQRYLKEHQRDFMPEDTKAGMIQAYLDKYTGSMVCSKQLYK 367
>gi|182636909|gb|ACB97669.1| non-structural protein 1 [Penaeus monodon hepatopancreatic
parvovirus]
Length = 578
Score = 43.2 bits (100), Expect = 0.16, Method: Composition-based stats.
Identities = 26/128 (20%), Positives = 48/128 (37%), Gaps = 20/128 (15%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVI 563
+ + G SGK+ L+ + + IM N ++ + S IV+
Sbjct: 394 MMLYGNSNSGKTQLIEALTGLV---------NTAIMTNVGDGGTFHFSNITEM--STIVV 442
Query: 564 ISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPN-KHLF--VRNPD 620
+ET + + K + GG+ +T + Y ++ P + N H + + D
Sbjct: 443 GNETKIRTQTIE-QWKGLCGGENVTMPMKYKEH--KTHMFRKPVFLTNQHHPLMDISHYD 499
Query: 621 DAWWRRYI 628
D RR I
Sbjct: 500 D---RRAI 504
>gi|321468365|gb|EFX79350.1| hypothetical protein DAPPUDRAFT_52572 [Daphnia pulex]
Length = 399
Score = 43.2 bits (100), Expect = 0.17, Method: Composition-based stats.
Identities = 31/151 (20%), Positives = 54/151 (35%), Gaps = 19/151 (12%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL---IRLMGSR 560
+ + G G+GK+ L + + + I S+++Q E + L R
Sbjct: 179 VLLYGPPGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPS 237
Query: 561 IVIISETNENDEINAAKIKQMTGGDC----MTARLNYGNTYSESPASFTPFIVPNKHLFV 616
I+ + E D I +++I+ +GGD L E+ + + N +
Sbjct: 238 IIFMDEI---DSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATN---RI 291
Query: 617 RNPDDAWWR--RY-IVIPFDKPIANRDASFA 644
D A R R I F P N +A
Sbjct: 292 DILDPALLRPGRIDRKIEF--PPPNEEARLD 320
>gi|256829092|ref|YP_003157820.1| AAA ATPase central domain-containing protein [Desulfomicrobium
baculatum DSM 4028]
gi|256578268|gb|ACU89404.1| AAA ATPase central domain protein [Desulfomicrobium baculatum DSM
4028]
Length = 731
Score = 43.2 bits (100), Expect = 0.17, Method: Composition-based stats.
Identities = 25/139 (17%), Positives = 46/139 (33%), Gaps = 14/139 (10%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVI 563
I + G G+GK+T + A G + N A + ++
Sbjct: 276 ILLYGAPGTGKTTFARSLAAAEGIP-AWSVSPPQGADNDRRAQLTAGARIASQHDKAFLL 334
Query: 564 ISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAW 623
+ E ++ + D NT+ E P +I N V + + A
Sbjct: 335 VDEAE--RILDCDMFSREKNVDKAWL-----NTFLEKPGQRVLWI-TNH---VHHLEGAV 383
Query: 624 WRRYIV-IPFDKPIANRDA 641
RR+ I F+ P+ ++
Sbjct: 384 RRRFHFSIHFE-PLGRKER 401
>gi|313159248|gb|EFR58617.1| VirE N-terminal domain protein [Alistipes sp. HGB5]
Length = 314
Score = 43.2 bits (100), Expect = 0.17, Method: Composition-based stats.
Identities = 14/100 (14%), Positives = 36/100 (36%), Gaps = 7/100 (7%)
Query: 182 VPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYN--GSHDEWIPVVMAVHHE 239
++K++ + +T + ++ + EE + + +W + A+ HE
Sbjct: 203 RGVLKERTARAKVRTAREKK---LLDEKVYKLIQKIREEKKDITDDYHDWYCIGCALAHE 259
Query: 240 TRGSSKGKEIARRWSKQGSTYDEENFNYKWDT-FDFEEIG 278
G +G + S Y + + ++ +IG
Sbjct: 260 Y-GKEEGLRLFHLVSMHSKKYYPTDCDEQFAKCLRSRKIG 298
>gi|332982883|ref|YP_004464324.1| ATP-dependent metalloprotease FtsH [Mahella australiensis 50-1 BON]
gi|332700561|gb|AEE97502.1| ATP-dependent metalloprotease FtsH [Mahella australiensis 50-1 BON]
Length = 595
Score = 43.2 bits (100), Expect = 0.17, Method: Composition-based stats.
Identities = 38/211 (18%), Positives = 69/211 (32%), Gaps = 26/211 (12%)
Query: 432 QDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVG 491
Q+G L T VKP E + F +QE + ++ E++D+
Sbjct: 133 QNG---LNTVSPVKPKDED----ISVVKFDSVAGNQEAKESLA------ELVDFIKEPEK 179
Query: 492 MALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKAN- 550
A G + R + + G G+GK+ L + G + + + + A +
Sbjct: 180 YAKYGA-RIPRGVILYGPPGTGKTLLARALAGEAGVPFYAVSGSDFVQMYVGVGAARIRS 238
Query: 551 -PSLIRLMGSRIVIISETNE-NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFI 608
R G ++ I E + + N ++ + T + +
Sbjct: 239 LFKKAREQGKCVIFIDEIDALGKKRNGGRMDGGSDERDQTLNALLAEMSGFNENQGIVIM 298
Query: 609 VPNKHLFVRNPDDAWWR--RYIVIPFDKPIA 637
L V D+A R R FD+ I
Sbjct: 299 AATNRLDV--LDEALLRPGR-----FDRQIE 322
>gi|123412608|ref|XP_001304101.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121885530|gb|EAX91171.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 194
Score = 43.2 bits (100), Expect = 0.17, Method: Composition-based stats.
Identities = 29/188 (15%), Positives = 58/188 (30%), Gaps = 16/188 (8%)
Query: 560 RIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV 616
++++ +E D +N+ +K + Y ++ + + N
Sbjct: 2 KLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDSRVYENVANFIMVSNNAVPMK 61
Query: 617 RNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-I 675
D RRY+V+ +D + L T E + I
Sbjct: 62 LESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTPEFYNHLFSYFMTLDISNFNPRQI 117
Query: 676 PEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIST 735
P + E + Y+ ++D+ + + Y EY++ Y S
Sbjct: 118 PHTEERQTLLEANKS-VYELFVDETDFVSLDER-------SLYDEYKQYCQEYGYMPASK 169
Query: 736 RTVTLNLK 743
RT N+K
Sbjct: 170 RTFLANVK 177
>gi|291335469|gb|ADD95081.1| hypothetical protein [uncultured phage MedDCM-OCT-S04-C348]
Length = 231
Score = 43.2 bits (100), Expect = 0.17, Method: Composition-based stats.
Identities = 37/177 (20%), Positives = 60/177 (33%), Gaps = 37/177 (20%)
Query: 22 PLRL--GDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYA-------FDIDS 72
PL +K P + G W+ + S + I + G G+ P+Y DID
Sbjct: 27 PLTPLGENKNPYKAG-WQNKPFSVKDIAREIEEGVCKAVGLLGGPVYNEPYGFVWVDID- 84
Query: 73 KDEKTANTFKDTFEILHGTPIVR---------IGQKPKILIPFRMN---KEGIKKKKTTE 120
T E L G P+ + G++ + +R+ + + K
Sbjct: 85 -----GITVYKKIEELAGEPVAKALPPTLTICSGREGRERKLYRVPKQLWDKFIRNKYCW 139
Query: 121 STQG---HLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLF 174
+G L++L V +HPKT YT F V + P D+
Sbjct: 140 HAEGNREKLEVLWKRHQGVLMGMHPKTDGYYTKENEDFTF-VSNIP-----DIPAWL 190
>gi|258544048|ref|ZP_05704282.1| conserved hypothetical protein [Cardiobacterium hominis ATCC 15826]
gi|258520676|gb|EEV89535.1| conserved hypothetical protein [Cardiobacterium hominis ATCC 15826]
Length = 892
Score = 43.2 bits (100), Expect = 0.17, Method: Composition-based stats.
Identities = 43/208 (20%), Positives = 70/208 (33%), Gaps = 30/208 (14%)
Query: 467 QEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQR--------FIHIRGVGGSGKSTLM 518
+E+ LV F + ++ G Q F+ I G GSGK++L+
Sbjct: 511 KEWAQLVWRAFGTNGMIAAVY-WFGSMF----AEQIRHVQSSFPFLEIIGEPGSGKTSLI 565
Query: 519 NLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEND-----EI 573
I FG + + N+ G + G+ V+ E + +
Sbjct: 566 EFIWKLFGREDYEGIDP-----NKNSLVGNQRSMMQ--YGNLPVVFIEADRAEGSHAKRF 618
Query: 574 NAAKIKQMTGGDCMTAR--LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIP 631
+ + K G R N G E P T I N+ + N DA R + +
Sbjct: 619 DWDETKGYYNGRGTRVRGQRNAGVETHEPPFRGTLVIAQNEPV---NASDAVLERIVQLR 675
Query: 632 FDKPIANRDASFAQKLETKYTLEAKKWF 659
F K N D+ A + + E +F
Sbjct: 676 FTKAGHNDDSKAATDEMQRMSAEQLSYF 703
>gi|123274452|ref|XP_001289880.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121861565|gb|EAX76950.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 211
Score = 43.2 bits (100), Expect = 0.17, Method: Composition-based stats.
Identities = 37/210 (17%), Positives = 67/210 (31%), Gaps = 19/210 (9%)
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGN 595
M N GK N S+ + +++ +E D +N+ +K + Y +
Sbjct: 1 MTNLENICGKFNSSIENMK---LIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKD 57
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
+ + N D RRY+V+ +D + L T +
Sbjct: 58 QRVCENVANFIMVSNNAVPMKLESSD---RRYVVVR-TSEAHMQDTEYFDDLAETLTSDF 113
Query: 656 KKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
+ IP + E + Y+ +ID+ + + SL
Sbjct: 114 YNHLFSYFMTLDISKFNPRQIPHTEERQTLLEANKS-VYELFIDET----DFECLDERSL 168
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLKQ 744
SY +Y ++ Y S RT N+K
Sbjct: 169 YDSYKQYCQE---YGYMAASKRTFLANVKN 195
>gi|326778039|ref|ZP_08237304.1| Bifunctional DNA primase/polymerase [Streptomyces cf. griseus
XylebKG-1]
gi|326658372|gb|EGE43218.1| Bifunctional DNA primase/polymerase [Streptomyces cf. griseus
XylebKG-1]
Length = 319
Score = 43.2 bits (100), Expect = 0.18, Method: Composition-based stats.
Identities = 23/120 (19%), Positives = 29/120 (24%), Gaps = 10/120 (8%)
Query: 51 ACGFGFVCGVGEQPLYAFDIDSKDE----KTANTFKDT-FEILHGTPIVRIGQKPKILIP 105
A G+G CG L D+D D A + + L P P
Sbjct: 83 ATGYGIACGRAPHRLIGVDLDI-DPSYGSDAAGALRQLGLQHLFTIPPTVTVLTPSGGRH 141
Query: 106 FRMNKEGIK--KKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTP 163
+ G +DI G G Y V T Y P
Sbjct: 142 LWLTGPADATVPNSAGRLAPG-IDIRGSGGYLVGPG-SVTTHGRYRLAPGTAHLTPAPCP 199
>gi|182437403|ref|YP_001825122.1| hypothetical protein SGR_3610 [Streptomyces griseus subsp. griseus
NBRC 13350]
gi|178465919|dbj|BAG20439.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus
NBRC 13350]
Length = 319
Score = 43.2 bits (100), Expect = 0.18, Method: Composition-based stats.
Identities = 23/120 (19%), Positives = 29/120 (24%), Gaps = 10/120 (8%)
Query: 51 ACGFGFVCGVGEQPLYAFDIDSKDE----KTANTFKDT-FEILHGTPIVRIGQKPKILIP 105
A G+G CG L D+D D A + + L P P
Sbjct: 83 ATGYGIACGRAPHRLIGVDLDI-DPSYGSDAAGALRQLGLQHLFTIPPTVTVLTPSGGRH 141
Query: 106 FRMNKEGIK--KKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTP 163
+ G +DI G G Y V T Y P
Sbjct: 142 LWLTGPADATVPNSAGRLAPG-IDIRGSGGYLVGPG-SVTTHGRYRLAPGTAHLTPAPCP 199
>gi|332881187|ref|ZP_08448843.1| conserved domain protein [Capnocytophaga sp. oral taxon 329 str.
F0087]
gi|332680861|gb|EGJ53802.1| conserved domain protein [Capnocytophaga sp. oral taxon 329 str.
F0087]
Length = 943
Score = 43.2 bits (100), Expect = 0.19, Method: Composition-based stats.
Identities = 33/182 (18%), Positives = 58/182 (31%), Gaps = 34/182 (18%)
Query: 489 CVGMALLGGNKAQRFIHIRGV------------GGSGKSTLMNLIKYAFGNQYVINAEAS 536
CVG L + + G GG+GKS L+N I+ ++Y +
Sbjct: 615 CVGYLLHQHKRESEAYIVMGTDYKGGNSARGSYGGTGKSFLVNGIRKLLKSKY---IDGK 671
Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNT 596
I N+ P + R+V + + N N + ++TG A G
Sbjct: 672 TIGANKFPYDKVTEKT-------RLVFLDDMNFNQDFR-DFYNKVTG--DFEANHKGGKI 721
Query: 597 YSESPASFTPFI--VPNKHLFVRNPDDAWWRRYIVIP----FDKPIANRDASFAQKLETK 650
+ P +P + N RR + + D F++K+
Sbjct: 722 F-YIPFERSPKMAATTNYVPDFEESS--LVRRLLFYQNSDYYHAKTPKNDYKFSRKISDD 778
Query: 651 YT 652
+
Sbjct: 779 FG 780
>gi|145486497|ref|XP_001429255.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124396346|emb|CAK61857.1| unnamed protein product [Paramecium tetraurelia]
Length = 393
Score = 43.2 bits (100), Expect = 0.19, Method: Composition-based stats.
Identities = 33/169 (19%), Positives = 58/169 (34%), Gaps = 21/169 (12%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL---IRLMGSR 560
+ + G G+GK+ L I + + I S+++Q E + L R
Sbjct: 173 VLLYGPPGTGKTLLARAIAH-HTDCTFIRVSGSELVQKYIGEGARMVRELFVMARQHSPC 231
Query: 561 IVIISETNENDEINAAKIKQMTGGDC----MTARLNYGNTYSESPASFTPFIVPNKHLFV 616
++ I E D I A+++ GGD L ES + + N +
Sbjct: 232 LIFIDEV---DSIGGARMEGERGGDSEVQRTMLELLNQLDGFESTQTIKIIMATN---RI 285
Query: 617 RNPDDAWWR--RYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGV 663
D A R R D+ + + +LE K ++G+
Sbjct: 286 DILDSALLRPGRI-----DRKVEFPNPGVDARLEILKIHSKKMNLMRGI 329
>gi|326336742|ref|ZP_08202910.1| ATP-dependent exoDNAse (exonuclease V), alpha subunit
[Capnocytophaga sp. oral taxon 338 str. F0234]
gi|325691212|gb|EGD33183.1| ATP-dependent exoDNAse (exonuclease V), alpha subunit
[Capnocytophaga sp. oral taxon 338 str. F0234]
Length = 467
Score = 43.2 bits (100), Expect = 0.19, Method: Composition-based stats.
Identities = 15/79 (18%), Positives = 31/79 (39%), Gaps = 18/79 (22%)
Query: 449 ELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRG 508
+++ T F + + L+ ++ + EE Q+ +RG
Sbjct: 5 DIHHLLLTHFSFSPTDSQESVLEELAYFLADEE------------------EQKLFLLRG 46
Query: 509 VGGSGKSTLMNLIKYAFGN 527
G+GK+TL+N + G+
Sbjct: 47 FAGTGKTTLINTLVKVLGS 65
>gi|290990159|ref|XP_002677704.1| predicted protein [Naegleria gruberi]
gi|284091313|gb|EFC44960.1| predicted protein [Naegleria gruberi]
Length = 846
Score = 43.2 bits (100), Expect = 0.19, Method: Composition-based stats.
Identities = 58/352 (16%), Positives = 113/352 (32%), Gaps = 62/352 (17%)
Query: 310 AYNKAMFSIYKKGHFL--YTADTKAWYK----------------KDKNNVYIWSLTLDKI 351
Y S+ + G Y+ + W K KDK + + + +
Sbjct: 427 EYEDLPTSVSEGGFIRVGYSTELDEWLKLSQHSETLIQDLQKEYKDKTGISTLKIKNNNV 486
Query: 352 TASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEA 411
F+ + E ++K + + F TD + E+ KA+ A +E
Sbjct: 487 MGY---FVEIPSSQRDRILPFKEFSHKQTMTNVVRFKTDKLEELQEKLGKAQQEAIDMEL 543
Query: 412 GSIFSITSDLLDSSSRFLGEQDGI--LDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF 469
F + LL + L I +DL + + + Y T+ TPF+E E ++
Sbjct: 544 KIFFQLQKKLLIIAKTLLSSAQSIASIDLYSSLALLARERSY-TRPNVTPFIESEELEKS 602
Query: 470 LD---LVSGYFESEEVMDYFTRCVGMAL-----LGGNKAQRFIHIRGVGGSGKSTLM--N 519
+++ +++Y + VG+ N R + + G +GKST + N
Sbjct: 603 KKKVPILNIQKGRHPIVEYAQQNVGLTFVSNDCTMFNNENRLMLLTGANMAGKSTYLRQN 662
Query: 520 LIKYAFGNQYV-INAEASDIMQ-----NRPPEAGKANPS--------------LIRLMGS 559
+ + A+ ++ M +R + L +
Sbjct: 663 ALIIILAQMGCFVPAQKAEFMVVDKIFSRVGASDNLANDQSTFMVEMVETANILNQATNK 722
Query: 560 RIVIISETN------ENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFT 605
VI+ E E I A I+ + + + R + + E
Sbjct: 723 SFVIMDELGRGTSVLEGLSIATAVIQHL--HNKIQCRALFATHFHELIEKAK 772
>gi|160914403|ref|ZP_02076618.1| hypothetical protein EUBDOL_00407 [Eubacterium dolichum DSM 3991]
gi|158433561|gb|EDP11850.1| hypothetical protein EUBDOL_00407 [Eubacterium dolichum DSM 3991]
Length = 464
Score = 43.2 bits (100), Expect = 0.19, Method: Composition-based stats.
Identities = 43/284 (15%), Positives = 77/284 (27%), Gaps = 37/284 (13%)
Query: 446 PTKELYITKSTGTPFVEGEPSQEF--LDLVSGYFES---EEVMDYFTRCVGMALLGGNKA 500
Y++ +G F + + E + + + A G K
Sbjct: 127 HPIRDYLSSLV----WDGTERIRFCLRHFLGADADDYTYEALKLFLLGAISRAFQPGCKF 182
Query: 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSR 560
+ + + G G+GKST L+ + +L G
Sbjct: 183 EIMLCLVGGQGAGKSTFFRLLA----------VRDEWFSDDLRKLDDD--NVYRKLQGHW 230
Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLN--YGNTYSESP---ASFTPFIVPNKHLF 615
I+ +SE + A K + +R Y Y P F + L
Sbjct: 231 IIEMSEM-----MATANAKSIEEIKSFLSRQKEVYKIPYETHPADRPRQCVFGGTSNALD 285
Query: 616 VRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDI 675
D + RR+ IP + + + W + ++ Y S +
Sbjct: 286 FLPLDRSGNRRF--IPVMVYPEQAEVHILEDEAASRAYIEQMWA-EAMEIYRSGRFKLAF 342
Query: 676 PEVCLKAKEEERQG---TDTYQAWIDDCCDIGENLWEESHSLAK 716
+ +E ++ DT I D S L K
Sbjct: 343 SPAMQRYLKEHQRDFMPEDTKAGMIQAYLDKYTGSMVCSKQLYK 386
>gi|92090662|gb|ABE73135.1| nonstructural protein 1 [Penaeus merguiensis densovirus]
Length = 578
Score = 43.2 bits (100), Expect = 0.19, Method: Composition-based stats.
Identities = 23/128 (17%), Positives = 46/128 (35%), Gaps = 19/128 (14%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVI 563
+ + G SGK+ L++ + + +M N ++ + S IV+
Sbjct: 394 MMLYGNSNSGKTQLIDALTGLV---------NTAVMTNVGDGGTFHFSNITEM--STIVV 442
Query: 564 ISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPN-KHLFVR----N 618
+ET + + K + GG+ +T + Y ++ P + N H V +
Sbjct: 443 GNETKIRTQ-TIEQWKGLCGGENVTMPMKYKEH--KTHMFRKPVFLTNQHHPLVDISHYD 499
Query: 619 PDDAWWRR 626
A R
Sbjct: 500 DRRAIENR 507
>gi|123497493|ref|XP_001327188.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121910114|gb|EAY14965.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 211
Score = 43.2 bits (100), Expect = 0.20, Method: Composition-based stats.
Identities = 37/209 (17%), Positives = 67/209 (32%), Gaps = 19/209 (9%)
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGN 595
M N GK N S+ + +++ +E D +N+ +K + Y +
Sbjct: 1 MTNLENICGKFNSSIENMK---LIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKD 57
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
+ + N D RRY+V+ +D + L T +
Sbjct: 58 QRVCENVANFIMVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDF 113
Query: 656 KKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
+ IP + E + Y+ +ID+ + + SL
Sbjct: 114 YNHLFSYFMTLDISKFNPRQIPHTEERQTLLEANKS-VYELFIDETDFVSLDER----SL 168
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLK 743
SY +Y ++ Y S RT N+K
Sbjct: 169 YDSYKQYCQE---YGYMTASKRTFLANVK 194
>gi|123186229|ref|XP_001281462.1| hypothetical protein [Trichomonas vaginalis G3]
gi|123195342|ref|XP_001283273.1| hypothetical protein [Trichomonas vaginalis G3]
gi|123298008|ref|XP_001290874.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121836268|gb|EAX68532.1| conserved hypothetical protein [Trichomonas vaginalis G3]
gi|121842391|gb|EAX70343.1| conserved hypothetical protein [Trichomonas vaginalis G3]
gi|121864106|gb|EAX77944.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 211
Score = 43.2 bits (100), Expect = 0.20, Method: Composition-based stats.
Identities = 37/209 (17%), Positives = 67/209 (32%), Gaps = 19/209 (9%)
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGN 595
M N GK N S+ + +++ +E D +N+ +K + Y +
Sbjct: 1 MTNLENICGKFNSSIENMK---LIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKD 57
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
+ + N D RRY+V+ +D + L T +
Sbjct: 58 QRVCENVANFIMVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDF 113
Query: 656 KKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
+ IP + E + Y+ +ID+ + + SL
Sbjct: 114 YNHLFSYFMTLDISKFNPRQIPHTEERQTLLEANKS-VYELFIDETDFVSLDER----SL 168
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLK 743
SY +Y ++ Y S RT N+K
Sbjct: 169 YDSYKQYCQE---YGYMTASKRTFLANVK 194
>gi|123183399|ref|XP_001280876.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121834168|gb|EAX67946.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 194
Score = 43.2 bits (100), Expect = 0.20, Method: Composition-based stats.
Identities = 32/188 (17%), Positives = 60/188 (31%), Gaps = 16/188 (8%)
Query: 560 RIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV 616
++++ +E D +N+ +K + Y + + I N
Sbjct: 2 KLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMISNNAVPMK 61
Query: 617 RNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-I 675
D RRY+V+ +D + L T + + I
Sbjct: 62 LESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQI 117
Query: 676 PEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIST 735
P + E + Y+ +ID+ + + SL SY +Y ++ Y S
Sbjct: 118 PHTEERQTLLEANKS-VYELFIDETDFVSLDER----SLYDSYKQYCQE---YGYMTASK 169
Query: 736 RTVTLNLK 743
RT N+K
Sbjct: 170 RTFLANVK 177
>gi|332703645|ref|ZP_08423733.1| prophage antirepressor [Desulfovibrio africanus str. Walvis Bay]
gi|332553794|gb|EGJ50838.1| prophage antirepressor [Desulfovibrio africanus str. Walvis Bay]
Length = 248
Score = 42.8 bits (99), Expect = 0.21, Method: Composition-based stats.
Identities = 12/77 (15%), Positives = 33/77 (42%), Gaps = 5/77 (6%)
Query: 696 WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755
+++ CC +G + E ++L +Y +S +L++ GG++ +
Sbjct: 166 FLERCCHLGPHFSESKNALYDAY---CLLCSTETETPLSRELFFRDLRRA--CGGLRDVR 220
Query: 756 IEKEWKSKRIIKGLKLK 772
+ + ++G+ L+
Sbjct: 221 PRVGRERPKRLRGVGLR 237
>gi|258545895|ref|ZP_05706129.1| conserved hypothetical protein [Cardiobacterium hominis ATCC 15826]
gi|258518911|gb|EEV87770.1| conserved hypothetical protein [Cardiobacterium hominis ATCC 15826]
Length = 895
Score = 42.8 bits (99), Expect = 0.21, Method: Composition-based stats.
Identities = 40/237 (16%), Positives = 72/237 (30%), Gaps = 29/237 (12%)
Query: 436 LDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALL 495
DL ++E + Q++ LV F ++ ++
Sbjct: 483 FDLPKKSIKSLSRE----RQMHIETTPRHYRQDWPQLVWRAFGTDGMIAAV-----YWFA 533
Query: 496 GGNKAQR--------FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAG 547
Q F+ + G GSGK+TL+ + G
Sbjct: 534 SLFAEQVRKCQSSFPFLEVIGEPGSGKTTLIEFLWRLLGQDREGIDPNKGTRAGLDRSLA 593
Query: 548 KANPSLIRLMGSRIVIIS--ETNENDEINAAKIKQMTGGDCMTARLNY--GNTYSESPAS 603
+ + M + + E + + + ++K G M R GN E P
Sbjct: 594 QHSN-----MPNVFIEADRAEDSHARKFDWDELKPFYNGRGMRVRGLKNSGNETYEPPFR 648
Query: 604 FTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFL 660
T I N + N DA R + + F K + D+ A + +E +F+
Sbjct: 649 GTLVIAQNDQV---NASDAVLERIVQLRFTKAGHSADSKAATDEMVRLGIEELSYFV 702
>gi|161019537|gb|ABX56103.1| E1 [Macaca fascicularis papillomavirus type 5]
Length = 628
Score = 42.8 bits (99), Expect = 0.21, Method: Composition-based stats.
Identities = 31/196 (15%), Positives = 68/196 (34%), Gaps = 28/196 (14%)
Query: 461 VEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTL-MN 519
+G ++ + + +++ E + + + L G + I + G +GKS M+
Sbjct: 413 DDGGDWRQIVQFLR--YQNVEFITFLSAL--KNFLKGIPKKNCIVLYGPPNTGKSYFGMS 468
Query: 520 LIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN-DEINAAKI 578
L+K+ G+ ++ L L +++ ++ + +
Sbjct: 469 LMKFLQGSIIS-------------YVNSSSHFWLQPLSDAKVAMLDDATPACWSYIDNYM 515
Query: 579 KQMTGGDCMTARLNYGNTYSES-PASFTPFIVPNKHLFVRNPDDAWW--RRYIVIPFDKP 635
+ G+ MT Y N P I N + D + R +V F +P
Sbjct: 516 RNALDGNPMTIDRKYKNLIQMKCPP---LLITSNTN--AGTDDRWLYLHSRLVVFTFKQP 570
Query: 636 IA-NRDASFAQKLETK 650
+R+ + +L K
Sbjct: 571 FPFDRNGNPVYELNDK 586
>gi|209883952|ref|YP_002287809.1| virulence-associated protein E [Oligotropha carboxidovorans OM5]
gi|209872148|gb|ACI91944.1| virulence-associated protein E [Oligotropha carboxidovorans OM5]
Length = 848
Score = 42.8 bits (99), Expect = 0.21, Method: Composition-based stats.
Identities = 41/261 (15%), Positives = 78/261 (29%), Gaps = 42/261 (16%)
Query: 473 VSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532
++ F + V + G KA + + G G+ KS+ + +
Sbjct: 561 LNRVFG----ARWMISAVARVMQPGVKADHMLILEGPQGTKKSSAIKTL----------- 605
Query: 533 AEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLN 592
A A K ++ G I+ I+E + ++IK R
Sbjct: 606 AGAGWFTDEIAEIGSKDAAQ--QMRGIWIIEIAELDAISRAEVSRIKAFLTRTTDRYRPP 663
Query: 593 YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYT 652
Y P + + D+ RR+ + N D + +
Sbjct: 664 YERYIVTIPRQ--CVFAGSVNPETYLRDETGNRRF----WPVRCGNIDLDALVRDRDQLW 717
Query: 653 LEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEE-----ERQGTDT-YQAWIDDCCDIGEN 706
EA + KG ++ + PE+ AK E D W+ + E
Sbjct: 718 AEAIALYRKGAIWWLDE------PELVASAKSEQDQRYYADAWDARIDRWL-----VYER 766
Query: 707 LWEESHSLAKSYSEYREQELN 727
S+ ++R++E+
Sbjct: 767 RHVNHG--YGSFDDWRDEEVE 785
>gi|262194251|ref|YP_003265460.1| hypothetical protein Hoch_0964 [Haliangium ochraceum DSM 14365]
gi|262077598|gb|ACY13567.1| hypothetical protein Hoch_0964 [Haliangium ochraceum DSM 14365]
Length = 904
Score = 42.8 bits (99), Expect = 0.21, Method: Composition-based stats.
Identities = 30/283 (10%), Positives = 82/283 (28%), Gaps = 32/283 (11%)
Query: 509 VGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN 568
GSGK L +LI + + + L G I+++
Sbjct: 597 NAGSGKGLLCHLISIV---TTGKGMDGCTLPGHEEEVRKSLTAELA--KGCPIIVLDNAQ 651
Query: 569 ENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYI 628
E +++A + + +R+ + P ++ +++ + + RR +
Sbjct: 652 ERTMLDSAALASVLTAPTWRSRILGKSEIVILP-NWALWMLTGNNPRISTE---LSRRCV 707
Query: 629 VIPFDKPIAN--RDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKA--KE 684
I D R + F + E + + + + V P + E
Sbjct: 708 RIRIDPKQEQAWRRSGFKHDPIIPWAYERRGELVHAALVLVQAWIAVGKPRGTERLGSFE 767
Query: 685 EERQGTDTYQA------WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738
++ + + + + ++ + E + ++
Sbjct: 768 HWAAVMSGILQVAGVPGFLGNLDAMYAEADSDGEHWKEFFTAWWEAFQDEGKRVSELNAF 827
Query: 739 TLNLKQKGFIGGIKREKIEK----------EWKSKRIIKGLKL 771
+++G + ++ + + R+ GL+L
Sbjct: 828 C---EERGLLDPMRGSGNTRAQETRLGRALQTARDRMYGGLRL 867
>gi|295091555|emb|CBK77662.1| Predicted P-loop ATPase and inactivated derivatives [Clostridium
cf. saccharolyticum K10]
Length = 445
Score = 42.8 bits (99), Expect = 0.21, Method: Composition-based stats.
Identities = 44/283 (15%), Positives = 77/283 (27%), Gaps = 35/283 (12%)
Query: 446 PTKELYITKSTGTPFVEGEPSQEFLDLVSGYFES----EEVMDYFTRCVGMALLGGNKAQ 501
Y+ + + E + L G E + + + A G K +
Sbjct: 108 HPIRDYL---SALVWDGTERIRFCLRHFLGADADDYTYEALKLFLLGAISRAFQPGCKFE 164
Query: 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRI 561
+ + G G+GKST L+ + +L G I
Sbjct: 165 IMLCLVGGQGAGKSTFFRLLA----------VRDEWFSDDLRKLDDD--NVYRKLQGHWI 212
Query: 562 VIISETNENDEINAAKIKQMTGGDCMTARLN--YGNTYSESP---ASFTPFIVPNKHLFV 616
+ +SE + A K + +R Y Y P F + L
Sbjct: 213 IEMSEM-----MATANAKSIEEIKSFLSRQKEVYKIPYETHPADRPRQCVFGGTSNALDF 267
Query: 617 RNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIP 676
D + RR+ IP + + + W + ++ Y S +
Sbjct: 268 LPLDRSGNRRF--IPVMVYPEQAEVHILEDEAASRAYIEQMWA-EAMEIYRSGRFKLAFS 324
Query: 677 EVCLKAKEEERQG---TDTYQAWIDDCCDIGENLWEESHSLAK 716
+ +E ++ DT I D S L K
Sbjct: 325 PAMQRYLKEHQRDFMPEDTKAGMIQAYLDKYTGSMVCSKQLYK 367
>gi|225377311|ref|ZP_03754532.1| hypothetical protein ROSEINA2194_02958 [Roseburia inulinivorans DSM
16841]
gi|225210842|gb|EEG93196.1| hypothetical protein ROSEINA2194_02958 [Roseburia inulinivorans DSM
16841]
Length = 442
Score = 42.8 bits (99), Expect = 0.21, Method: Composition-based stats.
Identities = 44/283 (15%), Positives = 77/283 (27%), Gaps = 35/283 (12%)
Query: 446 PTKELYITKSTGTPFVEGEPSQEFLDLVSGYFES----EEVMDYFTRCVGMALLGGNKAQ 501
Y+ + + E + L G E + + + A G K +
Sbjct: 105 HPIRDYL---SALVWDGTERIRFCLRHFLGADADDYTYEALKLFLLGAISRAFQPGCKFE 161
Query: 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRI 561
+ + G G+GKST L+ + +L G I
Sbjct: 162 IMLCLVGGQGAGKSTFFRLLA----------VRDEWFSDDLRKLDDD--NVYRKLQGHWI 209
Query: 562 VIISETNENDEINAAKIKQMTGGDCMTARLN--YGNTYSESP---ASFTPFIVPNKHLFV 616
+ +SE + A K + +R Y Y P F + L
Sbjct: 210 IEMSEM-----MATANAKSIEEIKSFLSRQKEVYKIPYETHPADRPRQCVFGGTSNALDF 264
Query: 617 RNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIP 676
D + RR+ IP + + + W + ++ Y S +
Sbjct: 265 LPLDRSGNRRF--IPVMVYPEQAEVHILEDEAASRAYIEQMWA-EAMEIYRSGRFKLAFS 321
Query: 677 EVCLKAKEEERQG---TDTYQAWIDDCCDIGENLWEESHSLAK 716
+ +E ++ DT I D S L K
Sbjct: 322 PAMQRYLKEHQRDFMPEDTKAGMIQAYLDKYTGSMVCSKQLYK 364
>gi|223985977|ref|ZP_03636009.1| hypothetical protein HOLDEFILI_03315 [Holdemania filiformis DSM
12042]
gi|323484962|ref|ZP_08090316.1| hypothetical protein HMPREF9474_02067 [Clostridium symbiosum
WAL-14163]
gi|223962033|gb|EEF66513.1| hypothetical protein HOLDEFILI_03315 [Holdemania filiformis DSM
12042]
gi|323401704|gb|EGA94048.1| hypothetical protein HMPREF9474_02067 [Clostridium symbiosum
WAL-14163]
Length = 445
Score = 42.8 bits (99), Expect = 0.21, Method: Composition-based stats.
Identities = 44/283 (15%), Positives = 77/283 (27%), Gaps = 35/283 (12%)
Query: 446 PTKELYITKSTGTPFVEGEPSQEFLDLVSGYFES----EEVMDYFTRCVGMALLGGNKAQ 501
Y+ + + E + L G E + + + A G K +
Sbjct: 108 HPIRDYL---SALVWDGTERIRFCLRHFLGADADDYTYEALKLFLLGAISRAFQPGCKFE 164
Query: 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRI 561
+ + G G+GKST L+ + +L G I
Sbjct: 165 IMLCLVGGQGAGKSTFFRLLA----------VRDEWFSDDLRKLDDD--NVYRKLQGHWI 212
Query: 562 VIISETNENDEINAAKIKQMTGGDCMTARLN--YGNTYSESP---ASFTPFIVPNKHLFV 616
+ +SE + A K + +R Y Y P F + L
Sbjct: 213 IEMSEM-----MATANAKSIEEIKSFLSRQKEVYKIPYETHPADRPRQCVFGGTSNALDF 267
Query: 617 RNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIP 676
D + RR+ IP + + + W + ++ Y S +
Sbjct: 268 LPLDRSGNRRF--IPVMVYPEQAEVHILEDEAASRAYIEQMWA-EAMEIYRSGRFKLAFS 324
Query: 677 EVCLKAKEEERQG---TDTYQAWIDDCCDIGENLWEESHSLAK 716
+ +E ++ DT I D S L K
Sbjct: 325 PAMQRYLKEHQRDFMPEDTKAGMIQAYLDKYTGSMVCSKQLYK 367
>gi|212286059|ref|YP_002308366.1| replication protein [Chelonia mydas papillomavirus 1]
gi|187941629|gb|ACD39807.1| replication protein [Chelonia mydas papillomavirus 1]
Length = 559
Score = 42.8 bits (99), Expect = 0.22, Method: Composition-based stats.
Identities = 37/222 (16%), Positives = 69/222 (31%), Gaps = 41/222 (18%)
Query: 439 ETGQKVKPT-KELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFT--RCVGMALL 495
+ G+ + EL + + + + + L ++ F++ + D+ R
Sbjct: 316 KKGEVQAMSLAELIVDRCEHHTDYDPDGWKNILLMLR--FQNIALADFLQALRNCLHC-- 371
Query: 496 GGNKAQRFIHIRGVGGSGKSTL-MNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS-- 552
+ I GV SGKS L M+LI+ ++ R A
Sbjct: 372 --VPKKCCIAFVGVPDSGKSMLCMSLIE---------------FLEGRVLSFSNARSHFW 414
Query: 553 LIRLMGSRIVIISETNEN-DEINAAKIKQMTGGDCMTARLNYGNTYSES-PASFTPFIVP 610
L L +I +I + + ++ G+ + Y P I
Sbjct: 415 LQPLGECKIALIDDATRPCWDYIETYLRNALDGNPVCIDAKYKAPVQIRCPP---ILITS 471
Query: 611 NKHLFVRNPDDA---------WWRRYIVIPFDKPIANRDASF 643
N + + + R V PFD+PI R+
Sbjct: 472 NVDIRQGDQINGVLQESTYKYLLNRICVFPFDRPIPIREGRL 513
>gi|215484236|ref|YP_002326463.1| Cell division protease ftsH-like protein [Acinetobacter baumannii
AB307-0294]
gi|213989091|gb|ACJ59390.1| Cell division protease ftsH-like protein [Acinetobacter baumannii
AB307-0294]
Length = 313
Score = 42.8 bits (99), Expect = 0.22, Method: Composition-based stats.
Identities = 43/246 (17%), Positives = 71/246 (28%), Gaps = 58/246 (23%)
Query: 437 DLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRC---VG-M 492
DL + + + I F + L L F E++ + R +G
Sbjct: 63 DLLGLKSHQHDLDGLI------EFSMPHIHRASLVLDENTFSRIELIIHEQRQRNELGKY 116
Query: 493 ALLGGNKAQRFIHIRGVGGSGKS-----------------TLMNLIKYAFGNQYVINAEA 535
L NK I G G+GK+ L +LI G+
Sbjct: 117 GLHPRNK----ILFVGAPGTGKTLTANILASELKLPLYKVVLESLISKFMGDTANKLRNI 172
Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM--TGGDCMTARLNY 593
D M G +GS+ + ++ E I + + + + D +
Sbjct: 173 FDFM---KDNIGIYLFDEFDAIGSQRNLTNDVGEVRRILNSFLILLEQSSTDSI------ 223
Query: 594 GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYI-VIPFDKPIANRDASFAQKLETKYT 652
N + D A RR+ +I FDKP F + + +
Sbjct: 224 ------------IIAATNHPELL---DAALNRRFDDIIKFDKPTKKEIQHFLESRISPFK 268
Query: 653 LEAKKW 658
E W
Sbjct: 269 AEKFNW 274
>gi|302552580|ref|ZP_07304922.1| conserved hypothetical protein [Streptomyces viridochromogenes DSM
40736]
gi|302470198|gb|EFL33291.1| conserved hypothetical protein [Streptomyces viridochromogenes DSM
40736]
Length = 202
Score = 42.8 bits (99), Expect = 0.22, Method: Composition-based stats.
Identities = 24/118 (20%), Positives = 37/118 (31%), Gaps = 10/118 (8%)
Query: 51 ACGFGFVCGVGEQPLYAFDIDSK---DEKTANTFKDTFEILHGTPIVRIGQKPKILIPFR 107
A G+G CG+ L D+D K D A + L P + P
Sbjct: 81 ATGYGIACGLPPHHLIGLDLDVKTGTDSSAALR-ELALRHLFTIPPTVVIVTPSGGRHLW 139
Query: 108 MNKEG--IKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTP 163
++ + G +DI G G Y V +T + + P + P
Sbjct: 140 LSGPSEVVVPNSAGRLAPG-IDIRGAGGYLVGPG--SRTGQG-VYAAAPGTAHLAPAP 193
>gi|123169758|ref|XP_001279483.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121829183|gb|EAX66553.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 194
Score = 42.8 bits (99), Expect = 0.22, Method: Composition-based stats.
Identities = 30/188 (15%), Positives = 59/188 (31%), Gaps = 16/188 (8%)
Query: 560 RIVIISETNE---NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV 616
++++ +E +N+ +K + Y + + + N
Sbjct: 2 KLIVCNELQSIDTQKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMK 61
Query: 617 RNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-I 675
D RRY+V+ +D + L T + + I
Sbjct: 62 LESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQI 117
Query: 676 PEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIST 735
P + E + Y+ +ID+ + + SL SY +Y ++ Y S
Sbjct: 118 PHTEERQTLLEANKS-VYELFIDETDFVSLDER----SLYDSYKQYCQE---YGYMAASK 169
Query: 736 RTVTLNLK 743
RT N+K
Sbjct: 170 RTFLANVK 177
>gi|257790509|ref|YP_003181115.1| AAA ATPase central domain-containing protein [Eggerthella lenta DSM
2243]
gi|257474406|gb|ACV54726.1| AAA ATPase central domain protein [Eggerthella lenta DSM 2243]
Length = 335
Score = 42.8 bits (99), Expect = 0.23, Method: Composition-based stats.
Identities = 29/180 (16%), Positives = 56/180 (31%), Gaps = 26/180 (14%)
Query: 467 QEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFG 526
EF+ + E++ R L +K I + G G+GK++L + +
Sbjct: 92 PEFVRRLCDDLVEEQLRADLLR--SYGLEPRHK----ILLVGAPGNGKTSLAEAVAESLM 145
Query: 527 NQYVINAEASDIMQNRPPEAGKANPSLIRLMGSR--IVIISETN-----ENDEINAAKIK 579
+ + ++ + E L +R ++ E D +IK
Sbjct: 146 VPF-LTIRYEQLIGSYLGETASRLGQLFDYARTRPCVLFFDEFETLGKERGDTHETGEIK 204
Query: 580 QMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR 639
++ + P+ N + D A WRR+ I + P R
Sbjct: 205 RVVSSLLLQIDSL--------PSYVVVIAATNHDDLL---DKAAWRRFQ-IRVELPPPTR 252
>gi|227431839|ref|ZP_03913863.1| virulence-associated E family protein [Leuconostoc mesenteroides
subsp. cremoris ATCC 19254]
gi|227352381|gb|EEJ42583.1| virulence-associated E family protein [Leuconostoc mesenteroides
subsp. cremoris ATCC 19254]
Length = 417
Score = 42.8 bits (99), Expect = 0.23, Method: Composition-based stats.
Identities = 45/283 (15%), Positives = 99/283 (34%), Gaps = 30/283 (10%)
Query: 485 YFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544
+F V A K + + G G+GK+TL+ + G+ YV
Sbjct: 158 FFIGAVAKAFNPFTKFDFSLDLVGDQGTGKTTLLKKLG---GDFYVDTI----------- 203
Query: 545 EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604
+ K ++ + IV E ++ +K+ + + R Y + + F
Sbjct: 204 QNFKDKDEYAKMQRALIVNDDEMQATNDSRFDVLKRFLSTETLEYRAPYAHKTVKHAKHF 263
Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVK 664
N+ ++++ RRY+ I ++ R + E +++ + V
Sbjct: 264 VIARTSNQVDYLKDKTGN--RRYLPI-----LSKRKNQVKHPYKDLTQAEVDQFWGEMVY 316
Query: 665 AYISKGLDVDIPEVCLKAKEEERQGT---DTYQAWIDDCCDIGENLWEESHSLAKSYSEY 721
Y G+ E ++ R+ D + I++ + + W S +A++
Sbjct: 317 KYKENGIKYPTLEQSES-LQQHREKFVYVDELENLINEFLEHTDLDWVTSSDIAEA---- 371
Query: 722 REQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKR 764
+ ++ R + ++ +T + K KR + WK
Sbjct: 372 QLNNIDLVRNQNISKQITNIMNNK-LEWDRKRLNSGRGWKRVT 413
>gi|222422955|dbj|BAH19462.1| AT1G64110 [Arabidopsis thaliana]
Length = 769
Score = 42.8 bits (99), Expect = 0.23, Method: Composition-based stats.
Identities = 30/178 (16%), Positives = 56/178 (31%), Gaps = 29/178 (16%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAG---KANPSLIRLMGSR 560
I + G G+GK+ L I G + IN S I E +A +L +
Sbjct: 558 ILLFGPPGTGKTMLAKAIAKEAGASF-INVSMSTITSKWFGEDEKNVRALFTLASKVSPT 616
Query: 561 IVIISETNE--NDEINAAKIKQMTGGDCMTARLN-YGNTYSESPASFTPFIVPNKHLFVR 617
I+ + E + + + M + + + P + F
Sbjct: 617 IIFVDEVDSMLGQRTRVGEHEAM---RKIKNEFMSHWDGLMTKPGERILVLAATNRPF-- 671
Query: 618 NPDDAWWRRYIVIPFDKPI-------ANRDASF-----AQKLETKYTLEAKKWFLKGV 663
+ D+A RR F++ I NR+ +K++ + +G
Sbjct: 672 DLDEAIIRR-----FERRIMVGLPAVENREKILRTLLAKEKVDENLDYKELAMMTEGY 724
>gi|123197575|ref|XP_001283827.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121844070|gb|EAX70897.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 194
Score = 42.8 bits (99), Expect = 0.23, Method: Composition-based stats.
Identities = 31/189 (16%), Positives = 60/189 (31%), Gaps = 16/189 (8%)
Query: 560 RIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV 616
++++ +E D +N+ +K + Y + + + N
Sbjct: 2 KLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMK 61
Query: 617 RNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-I 675
D RRY+V+ +D + L T + + I
Sbjct: 62 LESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQI 117
Query: 676 PEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIST 735
P + E + Y+ +ID+ + + SL SY +Y ++ Y S
Sbjct: 118 PHTEERQTLLEANKS-VYELFIDETDFVSLDER----SLYDSYKQYCQE---YGYMTASK 169
Query: 736 RTVTLNLKQ 744
RT N+K
Sbjct: 170 RTFLANVKN 178
>gi|17065032|gb|AAL32670.1| similar to homeobox protein [Arabidopsis thaliana]
Length = 752
Score = 42.8 bits (99), Expect = 0.23, Method: Composition-based stats.
Identities = 30/178 (16%), Positives = 56/178 (31%), Gaps = 29/178 (16%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAG---KANPSLIRLMGSR 560
I + G G+GK+ L I G + IN S I E +A +L +
Sbjct: 558 ILLFGPPGTGKTMLAKAIAKEAGASF-INVSMSTITSKWFGEDEKNVRALFTLASKVSPT 616
Query: 561 IVIISETNE--NDEINAAKIKQMTGGDCMTARLN-YGNTYSESPASFTPFIVPNKHLFVR 617
I+ + E + + + M + + + P + F
Sbjct: 617 IIFVDEVDSMLGQRTRVGEHEAM---RKIKNEFMSHWDGLMTKPGERILVLAATNRPF-- 671
Query: 618 NPDDAWWRRYIVIPFDKPI-------ANRDASF-----AQKLETKYTLEAKKWFLKGV 663
+ D+A RR F++ I NR+ +K++ + +G
Sbjct: 672 DLDEAIIRR-----FERRIMVGLPAVENREKILRTLLAKEKVDENLDYKELAMMTEGY 724
>gi|6692099|gb|AAF24564.1|AC007764_6 F22C12.12 [Arabidopsis thaliana]
Length = 825
Score = 42.8 bits (99), Expect = 0.23, Method: Composition-based stats.
Identities = 30/178 (16%), Positives = 56/178 (31%), Gaps = 29/178 (16%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAG---KANPSLIRLMGSR 560
I + G G+GK+ L I G + IN S I E +A +L +
Sbjct: 531 ILLFGPPGTGKTMLAKAIAKEAGASF-INVSMSTITSKWFGEDEKNVRALFTLASKVSPT 589
Query: 561 IVIISETNE--NDEINAAKIKQMTGGDCMTARLN-YGNTYSESPASFTPFIVPNKHLFVR 617
I+ + E + + + M + + + P + F
Sbjct: 590 IIFVDEVDSMLGQRTRVGEHEAM---RKIKNEFMSHWDGLMTKPGERILVLAATNRPF-- 644
Query: 618 NPDDAWWRRYIVIPFDKPI-------ANRDASF-----AQKLETKYTLEAKKWFLKGV 663
+ D+A RR F++ I NR+ +K++ + +G
Sbjct: 645 DLDEAIIRR-----FERRIMVGLPAVENREKILRTLLAKEKVDENLDYKELAMMTEGY 697
>gi|9630034|ref|NP_046252.1| helicase [Orgyia pseudotsugata MNPV]
gi|2493172|sp|Q83950|V143_NPVOP RecName: Full=ATP-dependent DNA helicase P143
gi|7436434|pir||T10365 helicase - Orgyia pseudotsugata nuclear polyhedrosis virus
gi|1209065|gb|AAB60602.1| DNA helicase [Orgyia pseudotsugata single capsid nuclopolyhedrovirus]
gi|1911342|gb|AAC59095.1| helicase [Orgyia pseudotsugata MNPV]
Length = 1223
Score = 42.8 bits (99), Expect = 0.23, Method: Composition-based stats.
Identities = 24/148 (16%), Positives = 55/148 (37%), Gaps = 13/148 (8%)
Query: 485 YFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLMNLIK-YAFGNQYVINAEASDIMQNR 542
Y +L + + ++ +++ GV SGKST L+ +++ + +
Sbjct: 895 YMLMHFAASLSVPTDYGRKAVYLPGVPLSGKSTFFELLDFLVLMHKFDDDTHTGASKETS 954
Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602
E N + I+E + + + K+ ++ + A
Sbjct: 955 DKEVSNLNSEVY--------TINELKK---CSESFFKKHADSSKSDSKSRKYQGLLKYEA 1003
Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIVI 630
++ IV N L+V + DD R++++
Sbjct: 1004 NYKMLIVNNNPLYVDDYDDGVQNRFLIV 1031
>gi|260424986|ref|ZP_05733891.2| putative virulence-associated protein E [Dialister invisus DSM
15470]
gi|260403825|gb|EEW97372.1| putative virulence-associated protein E [Dialister invisus DSM
15470]
Length = 794
Score = 42.8 bits (99), Expect = 0.23, Method: Composition-based stats.
Identities = 87/599 (14%), Positives = 163/599 (27%), Gaps = 98/599 (16%)
Query: 146 KEYTWT----TPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSII-----PSKT 196
+ W + F D P +S + + ++ + ++ K + +
Sbjct: 151 RLMYWPGCSKDSEYVFDYADAPFVSSDGILGQYEDWHDVRTWPQVPGKELKAKILLSKQA 210
Query: 197 WTNNNNRQYTNR----EIT-AFLSCFGEEFYNGSHDEWIP------VVMAV--------- 236
+ +I A + + H + + V AV
Sbjct: 211 DPTKKQGIVGSFCRTYDIRGAIQAYIPNAYTETDHTDRLTYTGGTTVAGAVLYDDDKFLY 270
Query: 237 -HHETRGSS----KGKEIAR--RWSKQGSTYDEENFNYKWDTFDFEEIGDTAKK--RSTF 287
HH T S ++ R ++S E + ++ + +
Sbjct: 271 SHHATDPCSGQLVNAFDLIRIHKFSGNDDNVKENTPISQIPSYRAMKKLAMQDSAVMTDL 330
Query: 288 TSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLT 347
H + SD + ++ Y +T K N + I +
Sbjct: 331 NMTAAVHASDVFSSNTGK--SDQKPAEGVNWMQEAKLAYDDNTGRPKKTMDNIIRILNHD 388
Query: 348 LDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQ 407
+ ++ + + L D + Y + K +
Sbjct: 389 PELAGKIAIDEFSTRGLALDSLPWNTCDLKRQWTDTDDAGIAWYLEDRYGITGRDKISGA 448
Query: 408 SLEAGSIFSITSDLLDSSSRFLGEQ-DGILDLETGQKVKPTKELYITKSTGTPFVEGEPS 466
+ + S D L DG L+T + +K TP+ G
Sbjct: 449 LM----LVSEQQRFNDVKDYLLSVSWDGAYRLDT-----AFHDYLGSK--DTPYTRGAAR 497
Query: 467 QEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFG 526
+ F V+ + G K G G GK+T + I G
Sbjct: 498 KSFTAAVARV-----------------MTPGCKYDYVPVFIGPQGIGKTTFLRTI----G 536
Query: 527 NQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDC 586
+ + E + G I I E + +IKQ
Sbjct: 537 KGWHSD-SLQSFHGKEAAEL---------IQGIWINEIGEMTGYSKSGDNEIKQFLSRCD 586
Query: 587 MTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQK 646
R YG P F N H F+++P + RR+ I D + S Q
Sbjct: 587 DVYRQPYGRHTGRYPRKGVFFGTCNDHDFLKDPTGS--RRFWPI--DVGVEPVTKSIWQD 642
Query: 647 LETKYTLEAKKWFLKGVKAY-ISKGLDVDIPEVCLKAKEEE-RQGTDT-----YQAWID 698
L + W + V + + + + P + AK+E+ R D+ Q ++D
Sbjct: 643 LPDEVDQL---WA-EAVMRWKQHEPIYFEDPAIEAMAKQEQDRHREDSAKDGLIQDFLD 697
>gi|284028383|ref|YP_003378314.1| Bifunctional DNA primase/polymerase [Kribbella flavida DSM 17836]
gi|283807676|gb|ADB29515.1| Bifunctional DNA primase/polymerase [Kribbella flavida DSM 17836]
Length = 290
Score = 42.8 bits (99), Expect = 0.23, Method: Composition-based stats.
Identities = 23/138 (16%), Positives = 43/138 (31%), Gaps = 26/138 (18%)
Query: 37 EEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRI 96
+ ++ + +P G L D+D A+ D+ L +V
Sbjct: 57 TDPERVAQIVAAVPDGQLAVRTGAVAG-LVVVDVD-----PAHGGNDSLAELVTHQLV-- 108
Query: 97 GQKPKILIP----------FRMNKEGIKKKKTTESTQGHLDILGCGQYFV-AYNIHPKTK 145
P+ L +R G + + +D+ G Y V ++H +T
Sbjct: 109 ---PRTLWVRTGSGGAHLYYRH--PGREIASRPMPGRAGIDVKADGGYVVLPPSMHHRTH 163
Query: 146 KEYTWTTPPHRFKVEDTP 163
Y W + P + P
Sbjct: 164 LPYQWGSGPAD--PTEMP 179
>gi|123205190|ref|XP_001284609.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121846485|gb|EAX71679.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 194
Score = 42.8 bits (99), Expect = 0.23, Method: Composition-based stats.
Identities = 31/189 (16%), Positives = 59/189 (31%), Gaps = 16/189 (8%)
Query: 560 RIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV 616
++++ +E D +N+ +K + Y + + + N
Sbjct: 2 KLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMK 61
Query: 617 RNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-I 675
D RRY+V+ +D + L T + I
Sbjct: 62 LESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTPNFYNHLFSYFMTLDISKFNPRQI 117
Query: 676 PEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIST 735
P + E + Y+ +ID+ + + SL SY +Y ++ Y S
Sbjct: 118 PYTEERQTLLEANKS-VYELFIDETDFVSLDER----SLYDSYKQYCQE---YGYMTASK 169
Query: 736 RTVTLNLKQ 744
RT N+K
Sbjct: 170 RTFLANVKN 178
>gi|303246065|ref|ZP_07332346.1| Bifunctional DNA primase/polymerase [Desulfovibrio fructosovorans
JJ]
gi|302492461|gb|EFL52332.1| Bifunctional DNA primase/polymerase [Desulfovibrio fructosovorans
JJ]
Length = 668
Score = 42.8 bits (99), Expect = 0.24, Method: Composition-based stats.
Identities = 24/122 (19%), Positives = 42/122 (34%), Gaps = 9/122 (7%)
Query: 32 RLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDT---FEIL 88
+W + ++ D G CG L +D + + + + E L
Sbjct: 69 GWNRWCHEKRPFDRTDFSTDRA-GVACGPASGVLV---LDVDNPRLFDAWMQEKHPDEPL 124
Query: 89 HGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYN-IHPKTKKE 147
T VR G + + ++ S +G DI G G + +HP+T+K
Sbjct: 125 PMTLKVRTGGHGER-FHYYFQYPSGDEQYFCRSVKGIFDIRGIGGQVLCPGSLHPETRKP 183
Query: 148 YT 149
Y
Sbjct: 184 YV 185
>gi|158635116|gb|ABW76420.1| helicase [Antheraea pernyi nucleopolyhedrovirus]
Length = 1212
Score = 42.8 bits (99), Expect = 0.24, Method: Composition-based stats.
Identities = 24/130 (18%), Positives = 49/130 (37%), Gaps = 12/130 (9%)
Query: 502 RFIHIRGVGGSGKSTLMNLIK-YAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSR 560
+ +++ GV SGKST L+ +++ + + E K N L
Sbjct: 901 KAVYLPGVPLSGKSTFFELLDFLVLMHKFDDETHTGESRETSDKEVSKLNSQLY------ 954
Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
I+E + + + K+ + + A++ IV N L+V + D
Sbjct: 955 --TINELKK---CSESFFKKHADSSKCDTKSRKYQGLLKYEANYKMLIVNNNPLYVDDYD 1009
Query: 621 DAWWRRYIVI 630
D R++++
Sbjct: 1010 DGVQNRFLIV 1019
>gi|146229724|gb|ABQ12289.1| helicase [Antheraea pernyi nucleopolyhedrovirus]
Length = 1212
Score = 42.8 bits (99), Expect = 0.24, Method: Composition-based stats.
Identities = 24/130 (18%), Positives = 49/130 (37%), Gaps = 12/130 (9%)
Query: 502 RFIHIRGVGGSGKSTLMNLIK-YAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSR 560
+ +++ GV SGKST L+ +++ + + E K N L
Sbjct: 901 KAVYLPGVPLSGKSTFFELLDFLVLMHKFDDETHTGESRETSDKEVSKLNSQLY------ 954
Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
I+E + + + K+ + + A++ IV N L+V + D
Sbjct: 955 --TINELKK---CSESFFKKHADSSKCDTKSRKYQGLLKYEANYKMLIVNNNPLYVDDYD 1009
Query: 621 DAWWRRYIVI 630
D R++++
Sbjct: 1010 DGVQNRFLIV 1019
>gi|96979825|ref|YP_611030.1| helicase [Antheraea pernyi nucleopolyhedrovirus]
gi|94983358|gb|ABF50298.1| helicase [Antheraea pernyi nucleopolyhedrovirus]
Length = 1212
Score = 42.8 bits (99), Expect = 0.24, Method: Composition-based stats.
Identities = 24/130 (18%), Positives = 49/130 (37%), Gaps = 12/130 (9%)
Query: 502 RFIHIRGVGGSGKSTLMNLIK-YAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSR 560
+ +++ GV SGKST L+ +++ + + E K N L
Sbjct: 901 KAVYLPGVPLSGKSTFFELLDFLVLMHKFDDETHTGESRETSDKEVSKLNSQLY------ 954
Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
I+E + + + K+ + + A++ IV N L+V + D
Sbjct: 955 --TINELKK---CSESFFKKHADSSKCDTKSRKYQGLLKYEANYKMLIVNNNPLYVDDYD 1009
Query: 621 DAWWRRYIVI 630
D R++++
Sbjct: 1010 DGVQNRFLIV 1019
>gi|45361563|ref|NP_989358.1| proteasome (prosome, macropain) 26S subunit, ATPase, 5 [Xenopus
(Silurana) tropicalis]
gi|39850038|gb|AAH64153.1| hypothetical protein MGC75584 [Xenopus (Silurana) tropicalis]
Length = 414
Score = 42.8 bits (99), Expect = 0.24, Method: Composition-based stats.
Identities = 53/345 (15%), Positives = 110/345 (31%), Gaps = 50/345 (14%)
Query: 334 YKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR 393
YK + + + + + + +S ED+ + + N + ++ R N R
Sbjct: 7 YKVAGDGMEQMEMDESRGGIGLRQYYLSKIEDLQLVVNDKSQNLRRLQAQRNELNAKVRL 66
Query: 394 QNVEE------NSKAKSTAQSLEAGSIF-SITSD-----LLDSSSRFLG--EQDGILDLE 439
E S ++++ + + + +D + + + + L
Sbjct: 67 LREELQLLQEQGSYVGEVVRAMDKKKVLVKVHPEGKFVVDIDKNID-INDVTPNCRVALR 125
Query: 440 ----TGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRC 489
T K+ P K + V + L E +EV++
Sbjct: 126 NDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEA 185
Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549
+G + + + G G+GK+ L + + + I S+++Q E +
Sbjct: 186 LG------IAQPKGVLLYGPPGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARM 238
Query: 550 NPSL---IRLMGSRIVIISETNENDEINAAKIKQMTGGDC----MTARLNYGNTYSESPA 602
L R I+ + E D I +++++ +GGD L E+
Sbjct: 239 VRELFVMAREHAPSIIFMDEI---DSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATK 295
Query: 603 SFTPFIVPNKHLFVRNPDDAWWR--RY-IVIPFDKPIANRDASFA 644
+ + N + D A R R I F P N +A
Sbjct: 296 NIKVIMATN---RIDILDSALLRPGRIDRKIEF--PPPNEEARLD 335
>gi|167770912|ref|ZP_02442965.1| hypothetical protein ANACOL_02265 [Anaerotruncus colihominis DSM
17241]
gi|167666952|gb|EDS11082.1| hypothetical protein ANACOL_02265 [Anaerotruncus colihominis DSM
17241]
Length = 445
Score = 42.8 bits (99), Expect = 0.24, Method: Composition-based stats.
Identities = 44/285 (15%), Positives = 78/285 (27%), Gaps = 38/285 (13%)
Query: 445 KPTKELYITKSTGTPFVEGEPSQEF--LDLVSGYFES---EEVMDYFTRCVGMALLGGNK 499
P ++ T +G F + + E + + + A G K
Sbjct: 108 HPIRDYLSTLV-----WDGTERIRFCLRHFLGADADDYTYEALKLFLLGAISRAFQPGCK 162
Query: 500 AQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGS 559
+ + + G G+GKST L+ + +L G
Sbjct: 163 FEIMLCLVGGQGAGKSTFFRLLA----------VRDEWFSDDLRKLDDD--NVYRKLQGH 210
Query: 560 RIVIISETNENDEINAAKIKQMTGGDCMTARLN--YGNTYSESP---ASFTPFIVPNKHL 614
I+ +SE + A K + +R Y Y P F + L
Sbjct: 211 WIIEMSEM-----MATANAKSIEEIKSFLSRQKEVYKIPYETHPADRPRQCVFGGTSNAL 265
Query: 615 FVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD 674
D + RR+ IP + + + W + ++ Y S +
Sbjct: 266 DFLPLDRSGNRRF--IPVMVYPEQAEVHILEDEAASRAYIEQMWA-EAMEIYRSGRFKLA 322
Query: 675 IPEVCLKAKEEERQG---TDTYQAWIDDCCDIGENLWEESHSLAK 716
+ +E ++ DT I D S L K
Sbjct: 323 FSPAMQRYLKEHQRDFMPEDTKAGMIQAYLDKYTGSMVCSKQLYK 367
>gi|256829955|ref|YP_003158683.1| AAA ATPase central domain-containing protein [Desulfomicrobium
baculatum DSM 4028]
gi|256579131|gb|ACU90267.1| AAA ATPase central domain protein [Desulfomicrobium baculatum DSM
4028]
Length = 360
Score = 42.8 bits (99), Expect = 0.24, Method: Composition-based stats.
Identities = 29/175 (16%), Positives = 54/175 (30%), Gaps = 21/175 (12%)
Query: 471 DLVSGYFESEEVMDYFTRCVGMALL--GGNKAQ-----RFIHIRGVGGSGKSTLMNLIKY 523
DL + +S+ R V + L+ G + I G G+GK+ + I
Sbjct: 93 DLWNTISDSQPPKQLIQRRVILPLIEEGLATKHGVVPPKAIVFFGPPGTGKTHFVKAIAG 152
Query: 524 AFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMG--SRIVIISETNE--NDEINAAKIK 579
Y+ + + + + G ++ I E E +I
Sbjct: 153 ILSWWYIEVMPSMLMANGVEKIGANLRHVMEEVRGLDRVVLFIDEFEELAGSRDMGDRID 212
Query: 580 QMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR--RY-IVIP 631
+ + + + N S+ N +R D A R R+ +IP
Sbjct: 213 KSITNEFLKQIPLFKNENSKI----LLVCATNY---IRQLDSAMLRPGRFDCIIP 260
>gi|75750414|ref|YP_319884.1| hypothetical protein ATV_gp53 [Acidianus two-tailed virus]
gi|123849327|sp|Q3V4U3|Y529_ATV RecName: Full=Uncharacterized protein ORF529
gi|74474797|emb|CAI59871.1| hypothetical protein [Acidianus two-tailed virus]
Length = 529
Score = 42.8 bits (99), Expect = 0.25, Method: Composition-based stats.
Identities = 35/161 (21%), Positives = 49/161 (30%), Gaps = 22/161 (13%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSR--- 560
I + G G GKS L LI G +I A DIM E+ + ++ RL
Sbjct: 112 ILLYGAPGMGKSELAKLISKWLG-IGMIQKRADDIMSKYLGESEQ---NMARLFKEEIPQ 167
Query: 561 ----IVIISETN------ENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVP 610
IV + E + A G + + E
Sbjct: 168 NLPTIVFMDEVDWLGVRRRFGSTTADTASTTVGQILTVFLQLFQDEVIEKRLPVLFIATT 227
Query: 611 NKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKY 651
N L + DDA+ RR+ PF + KY
Sbjct: 228 NARLE--DLDDAFKRRF---PFKIYFTPPSQEMIEYFTDKY 263
>gi|328726383|ref|XP_003248876.1| PREDICTED: hypothetical protein LOC100572784 [Acyrthosiphon pisum]
Length = 283
Score = 42.8 bits (99), Expect = 0.25, Method: Composition-based stats.
Identities = 26/104 (25%), Positives = 42/104 (40%), Gaps = 5/104 (4%)
Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
K N ++ SET+ N IN+ +K +T + ++ R ++ N + T
Sbjct: 5 NKRNARSAQIENKLASFSSETSSNCIINSQTLKLLTEPNIIS-RKSFSNDTGQKNY-LTQ 62
Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETK 650
FIV N + N D A + R V+ F D +KL
Sbjct: 63 FIVTNFKVEFDNDDPAAYHRLAVVEFKSHFTQPD---NEKLIIN 103
>gi|323138259|ref|ZP_08073331.1| hypothetical protein Met49242DRAFT_2719 [Methylocystis sp. ATCC
49242]
gi|322396511|gb|EFX99040.1| hypothetical protein Met49242DRAFT_2719 [Methylocystis sp. ATCC
49242]
Length = 818
Score = 42.8 bits (99), Expect = 0.25, Method: Composition-based stats.
Identities = 50/309 (16%), Positives = 96/309 (31%), Gaps = 51/309 (16%)
Query: 511 GSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN 570
GSGKST+ + ++ FG V ++ ++I+ + A+ ++L +
Sbjct: 522 GSGKSTVSDAMRVIFGKHAVSISDPAEIVGTHVDDIEFASF--VQLEEALFA-------G 572
Query: 571 DEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVI 630
D A KIK G + Y + N V DA RR+ +
Sbjct: 573 DPKTADKIKHSITGATLRINPKGRKAYQALNRLH-AILTTNHAWSVPAGRDA--RRWFIC 629
Query: 631 PF-DKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDV-DIPEVCLKAKEEERQ 688
D+ + D ++ K+ L ++ ++P A+++ R
Sbjct: 630 EVSDEKVG--DRAWFDKIYDDLQAGGYGQLLHYLQRKKLGSFHPRNMPRTFELAEQQIRS 687
Query: 689 GTDTYQAWI-----------------DDCCDIGENLWEESHSLAKSYS-EYREQELNYDR 730
+ + W+ + + + L +Y+ R Q D+
Sbjct: 688 AS-SIHQWLLSCAADGAIEAYERGVRKEHLQLELGADHATTKLYDAYAGAQRMQGGRVDQ 746
Query: 731 KRISTRTVTLNLKQ------------KGFIGGIKREKIEKEWKSK----RIIKGLKLKPA 774
K R + L + +GF E + S R+ G +
Sbjct: 747 KIHFARMLAKILGENARVRHAGDRNCRGFHIPQADELTQLVNLSLGICERVTDGARECNR 806
Query: 775 FESVDDNSN 783
VDD+
Sbjct: 807 RADVDDDDG 815
>gi|89055389|ref|YP_510840.1| hypothetical protein Jann_2898 [Jannaschia sp. CCS1]
gi|88864938|gb|ABD55815.1| hypothetical protein Jann_2898 [Jannaschia sp. CCS1]
Length = 825
Score = 42.8 bits (99), Expect = 0.25, Method: Composition-based stats.
Identities = 38/228 (16%), Positives = 61/228 (26%), Gaps = 31/228 (13%)
Query: 436 LDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALL 495
L+L G V+PT + D+++ E Y R + L
Sbjct: 484 LNLWQGFTVRPTPGDWSLMRAHI-----------RDVLAS--GDEASDSYIIRWMAWTLQ 530
Query: 496 -GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLI 554
A+ + RG G+GK + FG + + I
Sbjct: 531 NPDEPAEVALTFRGEPGTGKGVFGRTMAQLFGQHGLHTGGSEMITGRFNK---------- 580
Query: 555 RLMGSRIVIISETN-ENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKH 613
++ E + D AK+K + + + P I N
Sbjct: 581 HFRDCCLLFADEVVWDGDRKAEAKVKTFLTEPTLMIEGKGVDAVT-WPNMLHVIISSNSE 639
Query: 614 LFVRNPDDAWWRRYIVIPFDKPIANRDAS-FAQKLETKYTLEAKKWFL 660
V + RRY V FD R + L + L
Sbjct: 640 WVVPA--GPFERRYAV--FDVAATQRQKRGYFAPLFAELESGGLAAML 683
>gi|255537631|ref|XP_002509882.1| ATP binding protein, putative [Ricinus communis]
gi|223549781|gb|EEF51269.1| ATP binding protein, putative [Ricinus communis]
Length = 796
Score = 42.8 bits (99), Expect = 0.26, Method: Composition-based stats.
Identities = 30/167 (17%), Positives = 55/167 (32%), Gaps = 24/167 (14%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAG---KANPSLIRLMGSR 560
I + G G+GK+ + I G + IN S I E +A +L +
Sbjct: 520 ILLFGPPGTGKTMMAKAIAKEAGASF-INVSMSTITSKWFGEDEKNVRALFTLAAKVSPT 578
Query: 561 IVIISETNE--NDEINAAKIKQMTGGDCMTARLN-YGNTYSESPASFTPFIVPNKHLFVR 617
I+ + E + + + M + + + P+ + F
Sbjct: 579 IIFVDEVDSMLGQRTRVGEHEAM---RKIKNEFMTHWDGLLTKPSERILVLAATNRPF-- 633
Query: 618 NPDDAWWRRYIVIPFDKPI-------ANRDASFAQKLETKYTLEAKK 657
+ D+A RR F++ I NR+ F L + E +
Sbjct: 634 DLDEAIIRR-----FERRILVGLPSPENREKIFKTLLAKEKVEEGLQ 675
>gi|123447212|ref|XP_001312348.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121894192|gb|EAX99418.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 194
Score = 42.8 bits (99), Expect = 0.26, Method: Composition-based stats.
Identities = 31/188 (16%), Positives = 60/188 (31%), Gaps = 16/188 (8%)
Query: 560 RIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV 616
++++ +E D +N+ +K + Y + + + N
Sbjct: 2 KLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMK 61
Query: 617 RNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-I 675
D RRY+V+ +D + L T + + I
Sbjct: 62 LESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQI 117
Query: 676 PEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIST 735
P + E + Y+ +ID+ + + SL SY +Y ++ Y S
Sbjct: 118 PHTEERQTLLEANKS-VYELFIDETDFVSLDER----SLYDSYKQYCQE---YGYMAASK 169
Query: 736 RTVTLNLK 743
RT N+K
Sbjct: 170 RTFLANVK 177
>gi|9632973|ref|NP_050001.1| putative replication protein [Streptococcus phage Sfi21]
gi|5524054|gb|AAD44106.1|AF115103_36 orf271 gp [Streptococcus phage Sfi21]
gi|2352439|gb|AAC72437.1| orf271 [Streptococcus phage Sfi21]
Length = 271
Score = 42.8 bits (99), Expect = 0.26, Method: Composition-based stats.
Identities = 24/173 (13%), Positives = 53/173 (30%), Gaps = 5/173 (2%)
Query: 4 MQWKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQ 63
M+ + A G+ +IP+ K P + ++ ++ I ++ +
Sbjct: 1 MEMVDYAINYQRMGYSVIPISKNGKTPL-ISFADKPPMTENDIRRVWRDNPDANIALKTD 59
Query: 64 PLYAFDIDSK-DEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTEST 122
+ D+D D ++ E P P + K+
Sbjct: 60 TFFVIDVDMHGDVDGLTNLRNW-EHARLIPPTLQAITPSGGRHIYLKKDPNHPISQNIGM 118
Query: 123 QGHLDILGCGQYFVAYNIHPKTKKEYTWTT--PPHRFKVEDTPLLSEEDVEYL 173
+DI ++ +K Y W T P + + PL + ++ +
Sbjct: 119 IEGVDIKAHVNNYILVPPSNNSKGYYEWDTVHSPKDGSITEAPLALIKVLQKM 171
>gi|123231964|ref|XP_001286348.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121851706|gb|EAX73418.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 211
Score = 42.8 bits (99), Expect = 0.26, Method: Composition-based stats.
Identities = 36/210 (17%), Positives = 65/210 (30%), Gaps = 19/210 (9%)
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGN 595
M N GK N S+ + +++ +E D +N+ +K + Y +
Sbjct: 1 MTNLENICGKFNSSIENMK---LIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKD 57
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
+ + N D RRY+V+ +D + L T
Sbjct: 58 QRVCENVANFIMVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTPNF 113
Query: 656 KKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
+ IP + E + Y+ +ID+ + + SL
Sbjct: 114 YNHLFSYFMTLDISNFNPRQIPHTEERQTLLEANKS-VYELFIDE----NDFECLDERSL 168
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLKQ 744
Y +Y ++ Y S RT N+K
Sbjct: 169 YDEYKQYCQE---YGYMAASKRTFLANVKN 195
>gi|331645250|ref|ZP_08346361.1| conserved hypothetical protein [Escherichia coli M605]
gi|331046007|gb|EGI18126.1| conserved hypothetical protein [Escherichia coli M605]
Length = 897
Score = 42.8 bits (99), Expect = 0.27, Method: Composition-based stats.
Identities = 34/219 (15%), Positives = 71/219 (32%), Gaps = 24/219 (10%)
Query: 455 STGTPFVEGEP-SQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNK--AQRFIHI--RGV 509
+ + + + ++ +++ + F + ++ +G + + F + G
Sbjct: 499 TLQINYKKPDEFTESWVEDLWLAFGEKGIIT-LAFWLGSLFSEQIRDKEESFPFLEVTGE 557
Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569
G+GKSTL++ G + + + + L V++ E +
Sbjct: 558 PGTGKSTLIDFCWRLCGRDNYEGVDP---TKGSEAGWKRTFGQVAGLP----VVLIEADR 610
Query: 570 NDE------INAAKIKQMTGGDCMTARLNYGNTYSESPASFT--PFIVPNKHLFVRNPDD 621
D + +K + G + R N + F I N + N
Sbjct: 611 GDNAQKRGAFDFDNLKSLYNGGGIGVRGVKANNNNTYDPDFKGAIVIAQNARV---NASP 667
Query: 622 AWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFL 660
A R I I DK + D A + Y +E F+
Sbjct: 668 AIIERLIRIYTDKKRHSPDTRLAARRLELYPVEKVSGFI 706
>gi|123293984|ref|XP_001290660.1| hypothetical protein [Trichomonas vaginalis G3]
gi|123437598|ref|XP_001309593.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121863548|gb|EAX77730.1| conserved hypothetical protein [Trichomonas vaginalis G3]
gi|121891327|gb|EAX96663.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 194
Score = 42.8 bits (99), Expect = 0.27, Method: Composition-based stats.
Identities = 31/188 (16%), Positives = 60/188 (31%), Gaps = 16/188 (8%)
Query: 560 RIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV 616
++++ +E D +N+ +K + Y + + + N
Sbjct: 2 KLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNTVPMK 61
Query: 617 RNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-I 675
D RRY+V+ +D + L T + + I
Sbjct: 62 LESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQI 117
Query: 676 PEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIST 735
P + E + Y+ +ID+ + + SL SY +Y ++ Y S
Sbjct: 118 PHTEERQTLLEANKS-VYELFIDETDFVSLDER----SLYDSYKQYCQE---YGYMAASK 169
Query: 736 RTVTLNLK 743
RT N+K
Sbjct: 170 RTFLANVK 177
>gi|12958170|gb|AAK09273.1|AF293960_3 putative replication protein E1 [Human papillomavirus type 84]
Length = 650
Score = 42.8 bits (99), Expect = 0.27, Method: Composition-based stats.
Identities = 24/142 (16%), Positives = 46/142 (32%), Gaps = 19/142 (13%)
Query: 494 LLGGNKAQRFIHIRGVGGSGKSTL-MNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS 552
L G + + G +GKS M+LI Y G S +
Sbjct: 461 FLKGTPKKGCLVFYGPSDTGKSLFCMSLINYLGGTVISFVNSTS-------------HFW 507
Query: 553 LIRLMGSRIVIISETNENDEINAAK-IKQMTGGDCMTARLNYGNTYS-ESPASFTPFIVP 610
L L ++I ++ + I ++ + G+ ++ + N + P I
Sbjct: 508 LSPLADAKIGLLDDATYQCWIYMDTYLRSVLDGNVISVDRKHKNLVQLKCPP---LLITT 564
Query: 611 NKHLFVRNPDDAWWRRYIVIPF 632
N + + R ++ PF
Sbjct: 565 NINPETDDTFKYLRSRMVIFPF 586
>gi|290959118|ref|YP_003490300.1| hypothetical protein SCAB_47031 [Streptomyces scabiei 87.22]
gi|260648644|emb|CBG71756.1| conserved hypothetical protein [Streptomyces scabiei 87.22]
Length = 289
Score = 42.4 bits (98), Expect = 0.27, Method: Composition-based stats.
Identities = 26/129 (20%), Positives = 39/129 (30%), Gaps = 14/129 (10%)
Query: 51 ACGFGFVCGVGEQPLYAFDIDSK---DEKTANTFKDTFEILHGTPIVRIGQKPKILIP-F 106
A G+G CG+ L D+D+K D A + L P + P +
Sbjct: 81 ATGYGIACGLHPHHLIGVDLDTKSGTDSSAALR-ELALRHLFTIPETVVVLTPSGGRHIW 139
Query: 107 RMNKEGIKKKKTTESTQGHLDILGCGQYFVA---------YNIHPKTKKEYTWTTPPHRF 157
+ + +DI G G Y V Y P T PP
Sbjct: 140 LTGPPDVVVPNSASRLAPGIDIRGAGGYLVGPGSRTDHGVYGTAPGTSHLSPAPCPPALL 199
Query: 158 KVEDTPLLS 166
++ P +
Sbjct: 200 RLLSPPPRT 208
>gi|145532457|ref|XP_001451984.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124419661|emb|CAK84587.1| unnamed protein product [Paramecium tetraurelia]
Length = 393
Score = 42.4 bits (98), Expect = 0.27, Method: Composition-based stats.
Identities = 33/169 (19%), Positives = 58/169 (34%), Gaps = 21/169 (12%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL---IRLMGSR 560
+ + G G+GK+ L I + + I S+++Q E + L R
Sbjct: 173 VLLYGPPGTGKTLLARAIAH-HTDCTFIRVSGSELVQKYIGEGARMVRELFVMARQHSPC 231
Query: 561 IVIISETNENDEINAAKIKQMTGGDC----MTARLNYGNTYSESPASFTPFIVPNKHLFV 616
++ I E D I A+++ GGD L ES + + N +
Sbjct: 232 LIFIDEV---DSIGGARMEGERGGDSEVQRTMLELLNQLDGFESTQTIKIIMATN---RI 285
Query: 617 RNPDDAWWR--RYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGV 663
D A R R D+ + + +LE K ++G+
Sbjct: 286 DILDAALLRPGRI-----DRKVEFPNPGVDARLEILKIHSKKMNLMRGI 329
>gi|145531483|ref|XP_001451508.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124419163|emb|CAK84111.1| unnamed protein product [Paramecium tetraurelia]
Length = 393
Score = 42.4 bits (98), Expect = 0.27, Method: Composition-based stats.
Identities = 33/169 (19%), Positives = 58/169 (34%), Gaps = 21/169 (12%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL---IRLMGSR 560
+ + G G+GK+ L I + + I S+++Q E + L R
Sbjct: 173 VLLYGPPGTGKTLLARAIAH-HTDCTFIRVSGSELVQKYIGEGARMVRELFVMARQHSPC 231
Query: 561 IVIISETNENDEINAAKIKQMTGGDC----MTARLNYGNTYSESPASFTPFIVPNKHLFV 616
++ I E D I A+++ GGD L ES + + N +
Sbjct: 232 LIFIDEV---DSIGGARMEGERGGDSEVQRTMLELLNQLDGFESTQTIKIIMATN---RI 285
Query: 617 RNPDDAWWR--RYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGV 663
D A R R D+ + + +LE K ++G+
Sbjct: 286 DILDAALLRPGRI-----DRKVEFPNPGVDARLEILKIHSKKMNLMRGI 329
>gi|33589242|dbj|BAC81741.1| DNA helicase [Antheraea pernyi nucleopolyhedrovirus]
Length = 1212
Score = 42.4 bits (98), Expect = 0.27, Method: Composition-based stats.
Identities = 23/129 (17%), Positives = 52/129 (40%), Gaps = 10/129 (7%)
Query: 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRI 561
+ +++ GV SGKST L+ Y + + E+ + + + + S++
Sbjct: 901 KAVYLPGVPLSGKSTFFELL-------YFLVLMHKFDDETHTGESRETSDKEVSKLNSQL 953
Query: 562 VIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDD 621
I+E + + + K+ + + A++ IV N L+V + DD
Sbjct: 954 YTINELKK---CSESFFKKHADSSKCDTKSRKYQGLLKYEANYKMLIVNNNPLYVDDYDD 1010
Query: 622 AWWRRYIVI 630
R++++
Sbjct: 1011 GVQNRFLIV 1019
>gi|18407974|ref|NP_564824.1| AAA-type ATPase family protein [Arabidopsis thaliana]
gi|15810167|gb|AAL06985.1| At1g64110/F22C12_22 [Arabidopsis thaliana]
gi|30102500|gb|AAP21168.1| At1g64110/F22C12_22 [Arabidopsis thaliana]
gi|332196076|gb|AEE34197.1| P-loop containing nucleoside triphosphate hydrolase-like protein
[Arabidopsis thaliana]
Length = 824
Score = 42.4 bits (98), Expect = 0.27, Method: Composition-based stats.
Identities = 30/178 (16%), Positives = 56/178 (31%), Gaps = 29/178 (16%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAG---KANPSLIRLMGSR 560
I + G G+GK+ L I G + IN S I E +A +L +
Sbjct: 553 ILLFGPPGTGKTMLAKAIAKEAGASF-INVSMSTITSKWFGEDEKNVRALFTLASKVSPT 611
Query: 561 IVIISETNE--NDEINAAKIKQMTGGDCMTARLN-YGNTYSESPASFTPFIVPNKHLFVR 617
I+ + E + + + M + + + P + F
Sbjct: 612 IIFVDEVDSMLGQRTRVGEHEAM---RKIKNEFMSHWDGLMTKPGERILVLAATNRPF-- 666
Query: 618 NPDDAWWRRYIVIPFDKPI-------ANRDASF-----AQKLETKYTLEAKKWFLKGV 663
+ D+A RR F++ I NR+ +K++ + +G
Sbjct: 667 DLDEAIIRR-----FERRIMVGLPAVENREKILRTLLAKEKVDENLDYKELAMMTEGY 719
>gi|86355579|ref|YP_473247.1| Helicase/P143 [Hyphantria cunea nucleopolyhedrovirus]
gi|86198184|dbj|BAE72348.1| Helicase/P143 [Hyphantria cunea nucleopolyhedrovirus]
Length = 1230
Score = 42.4 bits (98), Expect = 0.27, Method: Composition-based stats.
Identities = 26/158 (16%), Positives = 58/158 (36%), Gaps = 13/158 (8%)
Query: 485 YFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLMNLIK-YAFGNQYVINAEASDIMQNR 542
+ +L + + ++ +++ GV SGKST L+ +++ + +
Sbjct: 902 FMLMHFAASLSVPTDYGRKAVYLPGVPLSGKSTFFELLDFLVLMHKFDDETHTGESKETS 961
Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602
E K N L I+E + + + K+ ++ + A
Sbjct: 962 DKEVSKLNSQLY--------TINELKK---CSESFFKKHADSSKSDSKSRKYQGLLKYEA 1010
Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD 640
++ IV N L+V + DD R++++ D +
Sbjct: 1011 NYKMLIVNNNPLYVDDYDDGVQNRFLIVYTDHKFVPHE 1048
>gi|237745755|ref|ZP_04576235.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
gi|229377106|gb|EEO27197.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS]
Length = 885
Score = 42.4 bits (98), Expect = 0.27, Method: Composition-based stats.
Identities = 40/186 (21%), Positives = 67/186 (36%), Gaps = 32/186 (17%)
Query: 467 QEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQR--------FIHIRGVGGSGKSTLM 518
+++LDL+ F ++ + T G Q F+ I G G+GKSTL+
Sbjct: 510 RDWLDLLWTAFGAKGLAA-LTFWFGSLF----AEQIRALHSSYPFLEIIGEAGAGKSTLI 564
Query: 519 NLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIIS---ETNEN----- 570
+ FG ++ A +A ++ G +V+I E E
Sbjct: 565 EFLWKLFGRGGY-----EGFDPSKSSLAARARN-FAQVSGLPVVLIESDRERAEGNNPHV 618
Query: 571 DEINAAKIKQMTGGDCMTARLN--YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYI 628
+ ++K G + AR GN E P + I N N +A R +
Sbjct: 619 RSFDWDELKTAYNGRSVRARGMATGGNETYEPPFRGSVVISQNN---AVNASEAILSRIV 675
Query: 629 VIPFDK 634
+ FD+
Sbjct: 676 HLNFDR 681
>gi|168229312|ref|YP_001686833.1| orf39 [Streptococcus phage 858]
gi|155241707|gb|ABT18027.1| orf39 [Streptococcus phage 858]
Length = 271
Score = 42.4 bits (98), Expect = 0.27, Method: Composition-based stats.
Identities = 31/211 (14%), Positives = 65/211 (30%), Gaps = 7/211 (3%)
Query: 8 EQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDK-LPACGFGFVCGVGEQPLY 66
E A GF +IP+ KR + K++++ S E++ + + +
Sbjct: 6 EYALHYQKLGFSVIPIDKTSKR--AVTKFKDKTFSEEEVKRLWHEHPNANIALR-TTDFF 62
Query: 67 AFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHL 126
DID + + + +E+ P + P + K + +
Sbjct: 63 VIDIDVSESEDGFQSLEDWELSKYIPKTLTAKTPSGGRHIFLKKPKGVNISQDIRVKPGI 122
Query: 127 DILGCGQYFVAYNIHPKTKKEYTW---TTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVP 183
DI ++ +K Y+W T E +L E F
Sbjct: 123 DIKANNNNYILVAPSNSSKGRYSWNKDTDTIAEAPKEIIDILKSEQKHEPLVFSTNYQRN 182
Query: 184 LVKDKKSIIPSKTWTNNNNRQYTNREITAFL 214
K + + + ++ N + +F+
Sbjct: 183 EFSSKTAKLFEQIVFGLGDKGGRNNALASFI 213
>gi|123163747|ref|XP_001279113.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121827803|gb|EAX66183.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 194
Score = 42.4 bits (98), Expect = 0.27, Method: Composition-based stats.
Identities = 31/188 (16%), Positives = 60/188 (31%), Gaps = 16/188 (8%)
Query: 560 RIVIISETNENDE---INAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV 616
++++ +E D +N+ +K + Y + + + N
Sbjct: 2 KLIVCNELQSIDTTKILNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMK 61
Query: 617 RNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-I 675
D RRY+V+ +D + L T + + I
Sbjct: 62 LESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQI 117
Query: 676 PEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIST 735
P + E + Y+ +ID+ + + SL SY +Y ++ Y S
Sbjct: 118 PHTEERQTLLEANKS-VYELFIDETDFVSLDER----SLYDSYKQYCQE---YGYMAASK 169
Query: 736 RTVTLNLK 743
RT N+K
Sbjct: 170 RTFLANVK 177
>gi|170751546|ref|YP_001757806.1| bifunctional DNA primase/polymerase [Methylobacterium radiotolerans
JCM 2831]
gi|170658068|gb|ACB27123.1| Bifunctional DNA primase/polymerase [Methylobacterium radiotolerans
JCM 2831]
Length = 289
Score = 42.4 bits (98), Expect = 0.28, Method: Composition-based stats.
Identities = 21/122 (17%), Positives = 33/122 (27%), Gaps = 15/122 (12%)
Query: 50 PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKIL----IP 105
P G G D+D + P+ + I
Sbjct: 75 PQANIGMATGT----TVVLDVD---PRHGGDASLEALEAEHGPLPETTRALTGGGGQHIL 127
Query: 106 FRMNKEGIKKKKTTE--STQGHLDILGCGQYFVAYNIHPKTKKEYTWTTP--PHRFKVED 161
FR + + + LDI G G Y VA + + + Y W+ P +
Sbjct: 128 FRAPADVEIRNSAGDQGGLAPGLDIRGAGGYIVAPSSRHASGRYYAWSVDHHPDDVPPAE 187
Query: 162 TP 163
P
Sbjct: 188 MP 189
>gi|90762220|gb|ABD97880.1| suppressor of K+ transport growth defect-like protein [Gossypium
hirsutum]
Length = 439
Score = 42.4 bits (98), Expect = 0.28, Method: Composition-based stats.
Identities = 26/160 (16%), Positives = 43/160 (26%), Gaps = 41/160 (25%)
Query: 494 LLGGNKAQRFIHIRGVGGSGK------------STLM-----NLIKYAFGNQYVINAEAS 536
G + + G G+GK ST +L+ G ++
Sbjct: 160 FTGKRRHGELFFLYGPPGTGKSYLAKAVATEADSTFFSVSSSDLVSKWMGE--SEKLVSN 217
Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNT 596
R + L G R +E+ + I + QM G + + +
Sbjct: 218 LFQMARDSAPSIIFNEIYSLCGQR-GEGNESEASRRIKTELLVQMHG-------VGHSD- 268
Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI 636
+ + D A RR FDK I
Sbjct: 269 ------QKVLMLAATNTPY--ALDHAIRRR-----FDKRI 295
>gi|326800965|ref|YP_004318784.1| ATPase AAA [Sphingobacterium sp. 21]
gi|326551729|gb|ADZ80114.1| AAA ATPase [Sphingobacterium sp. 21]
Length = 883
Score = 42.4 bits (98), Expect = 0.28, Method: Composition-based stats.
Identities = 27/101 (26%), Positives = 44/101 (43%), Gaps = 15/101 (14%)
Query: 493 ALLGGNKAQRFIHIR-----GVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAG 547
L K + F G GSGKST++NLI G + N+ G
Sbjct: 296 CLT-KLKEEIFFSPYFTCIIGGRGSGKSTIINLIAERLGEK------TEFFENNKILVDG 348
Query: 548 KANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588
K +++ V IS TNE + I+ K+++++ G+ +T
Sbjct: 349 K---DILKNNTEEYVTISGTNEIEFISQGKVEELSSGNKLT 386
>gi|157678966|dbj|BAF80482.1| E1 [Human papillomavirus type 57c]
Length = 643
Score = 42.4 bits (98), Expect = 0.28, Method: Composition-based stats.
Identities = 24/178 (13%), Positives = 51/178 (28%), Gaps = 21/178 (11%)
Query: 462 EGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLI 521
E + + + + E + + + L G + I G +GKS +
Sbjct: 429 EEGDWKPIVKFLR--HQGVEFVSFL--AAFKSFLKGVPKKNCIVFYGPADTGKSYFCMSL 484
Query: 522 KYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISE-TNENDEINAAKIKQ 580
G + A +S + L L S+I ++ + T + ++
Sbjct: 485 LQFLGGAVISYANSSS------------HFWLQPLADSKIGLLDDATAQCWTYIDTYLRN 532
Query: 581 MTGGDCMTARLNYGNTYSES-PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637
+ G+ + + P I N + + R + F P
Sbjct: 533 LLDGNPFSIDRKHKTLLQIKCPP---LMITTNINPLEEDRWKYLRSRVTLFKFTNPFP 587
>gi|137656|sp|P22153|VE1_HPV57 RecName: Full=Replication protein E1; AltName: Full=ATP-dependent
helicase E1
gi|60885|emb|CAA39432.1| unnamed protein product [Human papillomavirus type 57]
Length = 643
Score = 42.4 bits (98), Expect = 0.28, Method: Composition-based stats.
Identities = 24/178 (13%), Positives = 51/178 (28%), Gaps = 21/178 (11%)
Query: 462 EGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLI 521
E + + + + E + + + L G + I G +GKS +
Sbjct: 429 EEGDWKPIVKFLR--HQGVEFVSFL--AAFKSFLKGVPKKNCIVFYGPADTGKSYFCMSL 484
Query: 522 KYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISE-TNENDEINAAKIKQ 580
G + A +S + L L S+I ++ + T + ++
Sbjct: 485 LQFLGGAVISYANSSS------------HFWLQPLADSKIGLLDDATAQCWTYIDTYLRN 532
Query: 581 MTGGDCMTARLNYGNTYSES-PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637
+ G+ + + P I N + + R + F P
Sbjct: 533 LLDGNPFSIDRKHKTLLQIKCPP---LMITTNINPLEEDRWKYLRSRVTLFKFTNPFP 587
>gi|123381955|ref|XP_001298632.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121879256|gb|EAX85702.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 211
Score = 42.4 bits (98), Expect = 0.28, Method: Composition-based stats.
Identities = 35/209 (16%), Positives = 65/209 (31%), Gaps = 19/209 (9%)
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGN 595
M GK N S+ + +++ +E D +N+ +K + Y +
Sbjct: 1 MTKLENICGKFNSSIENMK---LIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKD 57
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
+ + N D RRY+V+ +D + L T +
Sbjct: 58 QRVCENVANFIMVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDF 113
Query: 656 KKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
+ IP + E + Y+ +ID+ + + SL
Sbjct: 114 YNHLFSYFMTLDISKFNPRQIPHTEERQTLLEANKS-VYELFIDETDFVSLDER----SL 168
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLK 743
Y +Y ++ Y S RT N+K
Sbjct: 169 YDEYKQYCQE---YGYMAASKRTFLANVK 194
>gi|260469733|ref|ZP_05813892.1| primase P4 [Mesorhizobium opportunistum WSM2075]
gi|259028465|gb|EEW29782.1| primase P4 [Mesorhizobium opportunistum WSM2075]
Length = 264
Score = 42.4 bits (98), Expect = 0.29, Method: Composition-based stats.
Identities = 13/110 (11%), Positives = 26/110 (23%), Gaps = 16/110 (14%)
Query: 371 EEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLG 430
E + K RR +K E + L++ +
Sbjct: 155 EMAVEAAKRVAEQLGARIGSRRRHAKSTAGSSKLNNLLAEGQPYMARKVGDLNTDRYSVN 214
Query: 431 EQDGILDLE----------------TGQKVKPTKELYITKSTGTPFVEGE 464
+ G +D T + + + +ITK +
Sbjct: 215 CRAGTIDFVQVEDQESDPEDPRFVWTARLREHRQGDFITKMVEAEWFSPP 264
>gi|30696968|ref|NP_849842.1| AAA-type ATPase family protein [Arabidopsis thaliana]
gi|332196075|gb|AEE34196.1| P-loop containing nucleoside triphosphate hydrolase-like protein
[Arabidopsis thaliana]
Length = 829
Score = 42.4 bits (98), Expect = 0.29, Method: Composition-based stats.
Identities = 30/178 (16%), Positives = 56/178 (31%), Gaps = 29/178 (16%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAG---KANPSLIRLMGSR 560
I + G G+GK+ L I G + IN S I E +A +L +
Sbjct: 558 ILLFGPPGTGKTMLAKAIAKEAGASF-INVSMSTITSKWFGEDEKNVRALFTLASKVSPT 616
Query: 561 IVIISETNE--NDEINAAKIKQMTGGDCMTARLN-YGNTYSESPASFTPFIVPNKHLFVR 617
I+ + E + + + M + + + P + F
Sbjct: 617 IIFVDEVDSMLGQRTRVGEHEAM---RKIKNEFMSHWDGLMTKPGERILVLAATNRPF-- 671
Query: 618 NPDDAWWRRYIVIPFDKPI-------ANRDASF-----AQKLETKYTLEAKKWFLKGV 663
+ D+A RR F++ I NR+ +K++ + +G
Sbjct: 672 DLDEAIIRR-----FERRIMVGLPAVENREKILRTLLAKEKVDENLDYKELAMMTEGY 724
>gi|153810251|ref|ZP_01962919.1| hypothetical protein RUMOBE_00632 [Ruminococcus obeum ATCC 29174]
gi|149833430|gb|EDM88511.1| hypothetical protein RUMOBE_00632 [Ruminococcus obeum ATCC 29174]
Length = 442
Score = 42.4 bits (98), Expect = 0.30, Method: Composition-based stats.
Identities = 43/284 (15%), Positives = 77/284 (27%), Gaps = 37/284 (13%)
Query: 446 PTKELYITKSTGTPFVEGEPSQEF--LDLVSGYFES---EEVMDYFTRCVGMALLGGNKA 500
Y++ +G F + + E + + + A G K
Sbjct: 105 HPIRDYLSSLV----WDGTERIRFCLRHFLGADADDYTYEALKLFLMGAISRAFQPGCKF 160
Query: 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSR 560
+ + + G G+GKST L+ + +L G
Sbjct: 161 EIMLCLVGGQGAGKSTFFRLLA----------VRDEWFSDDLRKLDDD--NVYRKLQGHW 208
Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLN--YGNTYSESP---ASFTPFIVPNKHLF 615
I+ +SE + A K + +R Y Y P F + L
Sbjct: 209 IIEMSEM-----MATANAKSIEEIKSFLSRQKEVYKIPYETHPADRPRQCVFGGTSNALD 263
Query: 616 VRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDI 675
D + RR+ IP + + + W + ++ Y S +
Sbjct: 264 FLPLDRSGNRRF--IPVMVYPEQAEVHILEDEAASRAYIEQMWA-EAMEIYRSGRFKLAF 320
Query: 676 PEVCLKAKEEERQG---TDTYQAWIDDCCDIGENLWEESHSLAK 716
+ +E ++ DT I D S L K
Sbjct: 321 SPTMQRYLKEHQRDFMPEDTKAGMIQAYLDKYTGSMVCSKQLYK 364
>gi|307197642|gb|EFN78821.1| Regulatory factor X domain-containing protein 2 [Harpegnathos
saltator]
Length = 1296
Score = 42.4 bits (98), Expect = 0.30, Method: Composition-based stats.
Identities = 11/76 (14%), Positives = 26/76 (34%), Gaps = 5/76 (6%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
WI + ++ + Y+ Y + K +ST +KQ ++
Sbjct: 195 MWIKTHLEEDPDVSLPKQEVYDEYNVYCIRN---SMKPLSTADFGKVMKQ--VYPRVRPR 249
Query: 755 KIEKEWKSKRIIKGLK 770
++ S+ G++
Sbjct: 250 RLGTRGNSRYCYAGMR 265
>gi|150391741|ref|YP_001321790.1| virulence-associated E family protein [Alkaliphilus metalliredigens
QYMF]
gi|149951603|gb|ABR50131.1| virulence-associated E family protein [Alkaliphilus metalliredigens
QYMF]
Length = 782
Score = 42.4 bits (98), Expect = 0.30, Method: Composition-based stats.
Identities = 42/241 (17%), Positives = 81/241 (33%), Gaps = 31/241 (12%)
Query: 460 FVEGEPSQEFLDLVSGYF------ESEEVMDYFTR-----CVGMALLGGNKAQRFIHIRG 508
+++ P+ + + V F + E + TR V + G K + G
Sbjct: 451 YLDSLPAWDGVKRVEDVFIKYLQADDTEYIRTVTRKTFAAAVARIYVPGIKFDCVPVLDG 510
Query: 509 VGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN 568
G GKST ++K +Y + M ++ +L G +V I E
Sbjct: 511 DQGIGKST---IVKDLVTAEYYSETLSLTDMDDKSGAE--------KLQGFWVVEIGELA 559
Query: 569 ENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPN----KHLFVRNPDDAWW 624
+ + K+K R +YG P N +
Sbjct: 560 GMKKADIEKVKAFLSTSDDKYRPSYGRVVESHPRQCIVIATVNGERGYLRDITGN----- 614
Query: 625 RRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKE 684
RR+ +I + + +F+++ ++ EAK+ + G K Y+ + + + A E
Sbjct: 615 RRFWIIKVHQKKQKKTWNFSEEYRQQFWAEAKEIWNSGEKLYLEGDILEEAEKAQKGAME 674
Query: 685 E 685
Sbjct: 675 A 675
>gi|186492938|ref|NP_001117544.1| AAA-type ATPase family protein [Arabidopsis thaliana]
gi|332196077|gb|AEE34198.1| P-loop containing nucleoside triphosphate hydrolase-like protein
[Arabidopsis thaliana]
Length = 827
Score = 42.4 bits (98), Expect = 0.31, Method: Composition-based stats.
Identities = 30/178 (16%), Positives = 56/178 (31%), Gaps = 29/178 (16%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAG---KANPSLIRLMGSR 560
I + G G+GK+ L I G + IN S I E +A +L +
Sbjct: 556 ILLFGPPGTGKTMLAKAIAKEAGASF-INVSMSTITSKWFGEDEKNVRALFTLASKVSPT 614
Query: 561 IVIISETNE--NDEINAAKIKQMTGGDCMTARLN-YGNTYSESPASFTPFIVPNKHLFVR 617
I+ + E + + + M + + + P + F
Sbjct: 615 IIFVDEVDSMLGQRTRVGEHEAM---RKIKNEFMSHWDGLMTKPGERILVLAATNRPF-- 669
Query: 618 NPDDAWWRRYIVIPFDKPI-------ANRDASF-----AQKLETKYTLEAKKWFLKGV 663
+ D+A RR F++ I NR+ +K++ + +G
Sbjct: 670 DLDEAIIRR-----FERRIMVGLPAVENREKILRTLLAKEKVDENLDYKELAMMTEGY 722
>gi|88603583|ref|YP_503761.1| AAA ATPase [Methanospirillum hungatei JF-1]
gi|88189045|gb|ABD42042.1| AAA ATPase, central region [Methanospirillum hungatei JF-1]
Length = 425
Score = 42.4 bits (98), Expect = 0.31, Method: Composition-based stats.
Identities = 39/197 (19%), Positives = 66/197 (33%), Gaps = 22/197 (11%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGK---ANPSLIRLMGSR 560
+ G G+GK++L + + ++ S + E K + RL+
Sbjct: 215 LLFIGPPGTGKTSLAFALTRVL-HMPILEVRLSMVTSQYLGETSKNIDRIFDVARLLSPC 273
Query: 561 IVIISETNENDEINAAKIKQMTGGD------CMTARLNYGNTYSESPASFTPFIVPNKHL 614
I+ I E + K G D + A L + S N
Sbjct: 274 ILFIDEFDF-------LAKSRVGDDHGAMKRAVNALLKNIDRISLIRNRVLLIGATNHP- 325
Query: 615 FVRNPDDAWWRRYI-VIPFDKP-IANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLD 672
+ D+A WRR+ VIPFD P + R+ + L T + + + L
Sbjct: 326 --QLLDEAAWRRFDEVIPFDLPDLPTRELILRRLLTESETHVDIAQVAEQTEGFSGADLK 383
Query: 673 VDIPEVCLKAKEEERQG 689
+ + E L A + R
Sbjct: 384 MLVREAILSALTDGRTE 400
>gi|23334599|ref|NP_694824.1| hypothetical protein [Junonia coenia densovirus]
gi|6136266|sp|Q90054|VNCS_JDNVP RecName: Full=Non-capsid protein NS-1; AltName: Full=NCVP1;
AltName: Full=Non-structural protein NS1
gi|257677|gb|AAB23699.1| orf2 [Junonia coenia densovirus]
Length = 545
Score = 42.4 bits (98), Expect = 0.31, Method: Composition-based stats.
Identities = 29/199 (14%), Positives = 63/199 (31%), Gaps = 21/199 (10%)
Query: 451 YITKSTGTPFVEGEPSQEFLDLVSGY--FESEEVMDYFTRCVGMALLGGNKAQRFIHIRG 508
Y + + E S + + + + E+++ F + L I
Sbjct: 348 YALFISSMKYDNLENSLNIIIELLKFQCNDDEDLIVEFLTNLVNVLDRRIPKLNAFLIIS 407
Query: 509 VGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKAN-PSLIRLMGSRIVIISET 567
+GK+ ++I + + +A + N + R+++ +E
Sbjct: 408 PPSAGKNFFFDMIFGLL------------LSYGQLGQANRHNLFAFQEAPNKRVLLWNEP 455
Query: 568 NENDEINAAKIKQMTGGDCMTARLN-YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRR 626
N + IK M GGD T R+ + + + + N F+ A+ R
Sbjct: 456 NYESSL-TDTIKMMFGGDPYTVRVKNRMDAHVKRTP--VIILTNNTVPFMYET--AFSDR 510
Query: 627 YIVIPFDKPIANRDASFAQ 645
I ++ +D
Sbjct: 511 IIQYKWNAAPFLKDYELKP 529
>gi|123329426|ref|XP_001293819.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121871081|gb|EAX80889.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 211
Score = 42.4 bits (98), Expect = 0.31, Method: Composition-based stats.
Identities = 36/209 (17%), Positives = 66/209 (31%), Gaps = 19/209 (9%)
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGN 595
M N GK N S+ + +++ +E D +N+ +K + Y +
Sbjct: 1 MTNLENICGKFNSSIENMK---LIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKD 57
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
+ + N D RRY+V+ +D + L T +
Sbjct: 58 QRVCENVANFIMVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDF 113
Query: 656 KKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
+ IP + E + Y+ +ID+ + + SL
Sbjct: 114 YNHLFSYFMTLDISKFNPRQIPHTEERQTLLEANKS-VYELFIDETDFVSLDEK----SL 168
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLK 743
Y +Y ++ Y S RT N+K
Sbjct: 169 YDEYKQYCQE---YGYMAASKRTFLANVK 194
>gi|327275516|ref|XP_003222519.1| PREDICTED: 26S protease regulatory subunit 8-like [Anolis
carolinensis]
Length = 414
Score = 42.4 bits (98), Expect = 0.32, Method: Composition-based stats.
Identities = 30/151 (19%), Positives = 54/151 (35%), Gaps = 19/151 (12%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL---IRLMGSR 560
+ + G G+GK+ L + + + I S+++Q E + L R
Sbjct: 194 VLLYGPPGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPS 252
Query: 561 IVIISETNENDEINAAKIKQMTGGDC----MTARLNYGNTYSESPASFTPFIVPNKHLFV 616
I+ + E D I +++++ +GGD L E+ + + N +
Sbjct: 253 IIFMDEI---DSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATN---RI 306
Query: 617 RNPDDAWWR--RY-IVIPFDKPIANRDASFA 644
D A R R I F P N +A
Sbjct: 307 DILDSALLRPGRIDRKIEF--PPPNEEARLD 335
>gi|317419381|emb|CBN81418.1| 26S protease regulatory subunit 8 [Dicentrarchus labrax]
Length = 398
Score = 42.4 bits (98), Expect = 0.32, Method: Composition-based stats.
Identities = 30/151 (19%), Positives = 54/151 (35%), Gaps = 19/151 (12%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL---IRLMGSR 560
+ + G G+GK+ L + + + I S+++Q E + L R
Sbjct: 178 VLLYGPPGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPS 236
Query: 561 IVIISETNENDEINAAKIKQMTGGDC----MTARLNYGNTYSESPASFTPFIVPNKHLFV 616
I+ + E D I +++++ +GGD L E+ + + N +
Sbjct: 237 IIFMDEI---DSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATN---RI 290
Query: 617 RNPDDAWWR--RY-IVIPFDKPIANRDASFA 644
D A R R I F P N +A
Sbjct: 291 DILDSALLRPGRIDRKIEF--PPPNEEARLD 319
>gi|317159335|ref|XP_001827724.2| cell cycle checkpoint protein rad17 [Aspergillus oryzae RIB40]
Length = 725
Score = 42.4 bits (98), Expect = 0.32, Method: Composition-based stats.
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 486 FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFG 526
+ A G + + +RG GSGK+T +N++ G
Sbjct: 115 VQSWLRNAFAG-TGEHKLLVLRGPAGSGKTTTINILSQTLG 154
>gi|297273395|ref|XP_002800612.1| PREDICTED: 26S protease regulatory subunit 8-like isoform 4 [Macaca
mulatta]
Length = 416
Score = 42.4 bits (98), Expect = 0.32, Method: Composition-based stats.
Identities = 30/151 (19%), Positives = 54/151 (35%), Gaps = 19/151 (12%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL---IRLMGSR 560
+ + G G+GK+ L + + + I S+++Q E + L R
Sbjct: 196 VLLYGPPGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPS 254
Query: 561 IVIISETNENDEINAAKIKQMTGGDC----MTARLNYGNTYSESPASFTPFIVPNKHLFV 616
I+ + E D I +++++ +GGD L E+ + + N +
Sbjct: 255 IIFMDEI---DSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATN---RI 308
Query: 617 RNPDDAWWR--RY-IVIPFDKPIANRDASFA 644
D A R R I F P N +A
Sbjct: 309 DILDSALLRPGRIDRKIEF--PPPNEEARLD 337
>gi|297273389|ref|XP_002800610.1| PREDICTED: 26S protease regulatory subunit 8-like isoform 2 [Macaca
mulatta]
Length = 422
Score = 42.4 bits (98), Expect = 0.32, Method: Composition-based stats.
Identities = 30/151 (19%), Positives = 54/151 (35%), Gaps = 19/151 (12%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL---IRLMGSR 560
+ + G G+GK+ L + + + I S+++Q E + L R
Sbjct: 202 VLLYGPPGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPS 260
Query: 561 IVIISETNENDEINAAKIKQMTGGDC----MTARLNYGNTYSESPASFTPFIVPNKHLFV 616
I+ + E D I +++++ +GGD L E+ + + N +
Sbjct: 261 IIFMDEI---DSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATN---RI 314
Query: 617 RNPDDAWWR--RY-IVIPFDKPIANRDASFA 644
D A R R I F P N +A
Sbjct: 315 DILDSALLRPGRIDRKIEF--PPPNEEARLD 343
>gi|281351659|gb|EFB27243.1| hypothetical protein PANDA_013936 [Ailuropoda melanoleuca]
Length = 357
Score = 42.4 bits (98), Expect = 0.32, Method: Composition-based stats.
Identities = 30/151 (19%), Positives = 54/151 (35%), Gaps = 19/151 (12%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL---IRLMGSR 560
+ + G G+GK+ L + + + I S+++Q E + L R
Sbjct: 137 VLLYGPPGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPS 195
Query: 561 IVIISETNENDEINAAKIKQMTGGDC----MTARLNYGNTYSESPASFTPFIVPNKHLFV 616
I+ + E D I +++++ +GGD L E+ + + N +
Sbjct: 196 IIFMDEI---DSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATN---RI 249
Query: 617 RNPDDAWWR--RY-IVIPFDKPIANRDASFA 644
D A R R I F P N +A
Sbjct: 250 DILDSALLRPGRIDRKIEF--PPPNEEARLD 278
>gi|229366526|gb|ACQ58243.1| 26S protease regulatory subunit 8 [Anoplopoma fimbria]
Length = 406
Score = 42.4 bits (98), Expect = 0.32, Method: Composition-based stats.
Identities = 30/151 (19%), Positives = 54/151 (35%), Gaps = 19/151 (12%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL---IRLMGSR 560
+ + G G+GK+ L + + + I S+++Q E + L R
Sbjct: 186 VLLYGPPGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPS 244
Query: 561 IVIISETNENDEINAAKIKQMTGGDC----MTARLNYGNTYSESPASFTPFIVPNKHLFV 616
I+ + E D I +++++ +GGD L E+ + + N +
Sbjct: 245 IIFMDEI---DSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATN---RI 298
Query: 617 RNPDDAWWR--RY-IVIPFDKPIANRDASFA 644
D A R R I F P N +A
Sbjct: 299 DILDSALLRPGRIDRKIEF--PPPNEEARLD 327
>gi|225707968|gb|ACO09830.1| 26S protease regulatory subunit 8 [Osmerus mordax]
Length = 406
Score = 42.4 bits (98), Expect = 0.32, Method: Composition-based stats.
Identities = 30/151 (19%), Positives = 54/151 (35%), Gaps = 19/151 (12%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL---IRLMGSR 560
+ + G G+GK+ L + + + I S+++Q E + L R
Sbjct: 186 VLLYGPPGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPS 244
Query: 561 IVIISETNENDEINAAKIKQMTGGDC----MTARLNYGNTYSESPASFTPFIVPNKHLFV 616
I+ + E D I +++++ +GGD L E+ + + N +
Sbjct: 245 IIFMDEI---DSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATN---RI 298
Query: 617 RNPDDAWWR--RY-IVIPFDKPIANRDASFA 644
D A R R I F P N +A
Sbjct: 299 DILDSALLRPGRIDRKIEF--PPPNEEARLD 327
>gi|238507547|ref|XP_002384975.1| cell cycle checkpoint protein Rad17, putative [Aspergillus flavus
NRRL3357]
gi|220689688|gb|EED46039.1| cell cycle checkpoint protein Rad17, putative [Aspergillus flavus
NRRL3357]
Length = 725
Score = 42.4 bits (98), Expect = 0.32, Method: Composition-based stats.
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 486 FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFG 526
+ A G + + +RG GSGK+T +N++ G
Sbjct: 115 VQSWLRNAFAG-TGEHKLLVLRGPAGSGKTTTINILSQTLG 154
>gi|197128441|gb|ACH44939.1| putative proteasome 26S subunit ATPase 5 variant 1 [Taeniopygia
guttata]
Length = 411
Score = 42.4 bits (98), Expect = 0.32, Method: Composition-based stats.
Identities = 30/151 (19%), Positives = 54/151 (35%), Gaps = 19/151 (12%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL---IRLMGSR 560
+ + G G+GK+ L + + + I S+++Q E + L R
Sbjct: 191 VLLYGPPGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPS 249
Query: 561 IVIISETNENDEINAAKIKQMTGGDC----MTARLNYGNTYSESPASFTPFIVPNKHLFV 616
I+ + E D I +++++ +GGD L E+ + + N +
Sbjct: 250 IIFMDEI---DSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATN---RI 303
Query: 617 RNPDDAWWR--RY-IVIPFDKPIANRDASFA 644
D A R R I F P N +A
Sbjct: 304 DILDSALLRPGRIDRKIEF--PPPNEEARLD 332
>gi|149054558|gb|EDM06375.1| peptidase (prosome, macropain) 26S subunit, ATPase 5, isoform CRA_d
[Rattus norvegicus]
Length = 320
Score = 42.4 bits (98), Expect = 0.32, Method: Composition-based stats.
Identities = 30/151 (19%), Positives = 54/151 (35%), Gaps = 19/151 (12%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL---IRLMGSR 560
+ + G G+GK+ L + + + I S+++Q E + L R
Sbjct: 100 VLLYGPPGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPS 158
Query: 561 IVIISETNENDEINAAKIKQMTGGDC----MTARLNYGNTYSESPASFTPFIVPNKHLFV 616
I+ + E D I +++++ +GGD L E+ + + N +
Sbjct: 159 IIFMDEI---DSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATN---RI 212
Query: 617 RNPDDAWWR--RY-IVIPFDKPIANRDASFA 644
D A R R I F P N +A
Sbjct: 213 DILDSALLRPGRIDRKIEF--PPPNEEARLD 241
>gi|149054556|gb|EDM06373.1| peptidase (prosome, macropain) 26S subunit, ATPase 5, isoform CRA_b
[Rattus norvegicus]
Length = 416
Score = 42.4 bits (98), Expect = 0.32, Method: Composition-based stats.
Identities = 30/151 (19%), Positives = 54/151 (35%), Gaps = 19/151 (12%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL---IRLMGSR 560
+ + G G+GK+ L + + + I S+++Q E + L R
Sbjct: 196 VLLYGPPGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPS 254
Query: 561 IVIISETNENDEINAAKIKQMTGGDC----MTARLNYGNTYSESPASFTPFIVPNKHLFV 616
I+ + E D I +++++ +GGD L E+ + + N +
Sbjct: 255 IIFMDEI---DSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATN---RI 308
Query: 617 RNPDDAWWR--RY-IVIPFDKPIANRDASFA 644
D A R R I F P N +A
Sbjct: 309 DILDSALLRPGRIDRKIEF--PPPNEEARLD 337
>gi|149054560|gb|EDM06377.1| peptidase (prosome, macropain) 26S subunit, ATPase 5, isoform CRA_f
[Rattus norvegicus]
Length = 240
Score = 42.4 bits (98), Expect = 0.32, Method: Composition-based stats.
Identities = 30/151 (19%), Positives = 54/151 (35%), Gaps = 19/151 (12%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL---IRLMGSR 560
+ + G G+GK+ L + + + I S+++Q E + L R
Sbjct: 20 VLLYGPPGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPS 78
Query: 561 IVIISETNENDEINAAKIKQMTGGDC----MTARLNYGNTYSESPASFTPFIVPNKHLFV 616
I+ + E D I +++++ +GGD L E+ + + N +
Sbjct: 79 IIFMDEI---DSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATN---RI 132
Query: 617 RNPDDAWWR--RY-IVIPFDKPIANRDASFA 644
D A R R I F P N +A
Sbjct: 133 DILDSALLRPGRIDRKIEF--PPPNEEARLD 161
>gi|149054559|gb|EDM06376.1| peptidase (prosome, macropain) 26S subunit, ATPase 5, isoform CRA_e
[Rattus norvegicus]
Length = 269
Score = 42.4 bits (98), Expect = 0.32, Method: Composition-based stats.
Identities = 30/151 (19%), Positives = 54/151 (35%), Gaps = 19/151 (12%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL---IRLMGSR 560
+ + G G+GK+ L + + + I S+++Q E + L R
Sbjct: 49 VLLYGPPGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPS 107
Query: 561 IVIISETNENDEINAAKIKQMTGGDC----MTARLNYGNTYSESPASFTPFIVPNKHLFV 616
I+ + E D I +++++ +GGD L E+ + + N +
Sbjct: 108 IIFMDEI---DSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATN---RI 161
Query: 617 RNPDDAWWR--RY-IVIPFDKPIANRDASFA 644
D A R R I F P N +A
Sbjct: 162 DILDSALLRPGRIDRKIEF--PPPNEEARLD 190
>gi|148702336|gb|EDL34283.1| protease (prosome, macropain) 26S subunit, ATPase 5, isoform CRA_b
[Mus musculus]
Length = 326
Score = 42.4 bits (98), Expect = 0.32, Method: Composition-based stats.
Identities = 30/151 (19%), Positives = 54/151 (35%), Gaps = 19/151 (12%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL---IRLMGSR 560
+ + G G+GK+ L + + + I S+++Q E + L R
Sbjct: 106 VLLYGPPGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPS 164
Query: 561 IVIISETNENDEINAAKIKQMTGGDC----MTARLNYGNTYSESPASFTPFIVPNKHLFV 616
I+ + E D I +++++ +GGD L E+ + + N +
Sbjct: 165 IIFMDEI---DSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATN---RI 218
Query: 617 RNPDDAWWR--RY-IVIPFDKPIANRDASFA 644
D A R R I F P N +A
Sbjct: 219 DILDSALLRPGRIDRKIEF--PPPNEEARLD 247
>gi|126308659|ref|XP_001376943.1| PREDICTED: similar to mSUG1 protein [Monodelphis domestica]
Length = 451
Score = 42.4 bits (98), Expect = 0.32, Method: Composition-based stats.
Identities = 30/151 (19%), Positives = 54/151 (35%), Gaps = 19/151 (12%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL---IRLMGSR 560
+ + G G+GK+ L + + + I S+++Q E + L R
Sbjct: 231 VLLYGPPGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPS 289
Query: 561 IVIISETNENDEINAAKIKQMTGGDC----MTARLNYGNTYSESPASFTPFIVPNKHLFV 616
I+ + E D I +++++ +GGD L E+ + + N +
Sbjct: 290 IIFMDEI---DSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATN---RI 343
Query: 617 RNPDDAWWR--RY-IVIPFDKPIANRDASFA 644
D A R R I F P N +A
Sbjct: 344 DILDSALLRPGRIDRKIEF--PPPNEEARLD 372
>gi|118102836|ref|XP_425834.2| PREDICTED: similar to mSUG1 protein [Gallus gallus]
Length = 406
Score = 42.4 bits (98), Expect = 0.32, Method: Composition-based stats.
Identities = 30/151 (19%), Positives = 54/151 (35%), Gaps = 19/151 (12%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL---IRLMGSR 560
+ + G G+GK+ L + + + I S+++Q E + L R
Sbjct: 186 VLLYGPPGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPS 244
Query: 561 IVIISETNENDEINAAKIKQMTGGDC----MTARLNYGNTYSESPASFTPFIVPNKHLFV 616
I+ + E D I +++++ +GGD L E+ + + N +
Sbjct: 245 IIFMDEI---DSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATN---RI 298
Query: 617 RNPDDAWWR--RY-IVIPFDKPIANRDASFA 644
D A R R I F P N +A
Sbjct: 299 DILDSALLRPGRIDRKIEF--PPPNEEARLD 327
>gi|114669864|ref|XP_001149426.1| PREDICTED: similar to mSUG1 protein isoform 3 [Pan troglodytes]
Length = 433
Score = 42.4 bits (98), Expect = 0.32, Method: Composition-based stats.
Identities = 30/151 (19%), Positives = 54/151 (35%), Gaps = 19/151 (12%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL---IRLMGSR 560
+ + G G+GK+ L + + + I S+++Q E + L R
Sbjct: 213 VLLYGPPGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPS 271
Query: 561 IVIISETNENDEINAAKIKQMTGGDC----MTARLNYGNTYSESPASFTPFIVPNKHLFV 616
I+ + E D I +++++ +GGD L E+ + + N +
Sbjct: 272 IIFMDEI---DSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATN---RI 325
Query: 617 RNPDDAWWR--RY-IVIPFDKPIANRDASFA 644
D A R R I F P N +A
Sbjct: 326 DILDSALLRPGRIDRKIEF--PPPNEEARLD 354
>gi|114669878|ref|XP_001149776.1| PREDICTED: similar to mSUG1 protein isoform 7 [Pan troglodytes]
gi|119614675|gb|EAW94269.1| proteasome (prosome, macropain) 26S subunit, ATPase, 5, isoform
CRA_a [Homo sapiens]
Length = 383
Score = 42.4 bits (98), Expect = 0.32, Method: Composition-based stats.
Identities = 30/151 (19%), Positives = 54/151 (35%), Gaps = 19/151 (12%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL---IRLMGSR 560
+ + G G+GK+ L + + + I S+++Q E + L R
Sbjct: 163 VLLYGPPGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPS 221
Query: 561 IVIISETNENDEINAAKIKQMTGGDC----MTARLNYGNTYSESPASFTPFIVPNKHLFV 616
I+ + E D I +++++ +GGD L E+ + + N +
Sbjct: 222 IIFMDEI---DSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATN---RI 275
Query: 617 RNPDDAWWR--RY-IVIPFDKPIANRDASFA 644
D A R R I F P N +A
Sbjct: 276 DILDSALLRPGRIDRKIEF--PPPNEEARLD 304
>gi|114669882|ref|XP_511591.2| PREDICTED: similar to mSUG1 protein isoform 12 [Pan troglodytes]
Length = 268
Score = 42.4 bits (98), Expect = 0.32, Method: Composition-based stats.
Identities = 30/151 (19%), Positives = 54/151 (35%), Gaps = 19/151 (12%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL---IRLMGSR 560
+ + G G+GK+ L + + + I S+++Q E + L R
Sbjct: 48 VLLYGPPGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPS 106
Query: 561 IVIISETNENDEINAAKIKQMTGGDC----MTARLNYGNTYSESPASFTPFIVPNKHLFV 616
I+ + E D I +++++ +GGD L E+ + + N +
Sbjct: 107 IIFMDEI---DSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATN---RI 160
Query: 617 RNPDDAWWR--RY-IVIPFDKPIANRDASFA 644
D A R R I F P N +A
Sbjct: 161 DILDSALLRPGRIDRKIEF--PPPNEEARLD 189
>gi|114669876|ref|XP_001149010.1| PREDICTED: similar to mSUG1 protein isoform 1 [Pan troglodytes]
Length = 425
Score = 42.4 bits (98), Expect = 0.32, Method: Composition-based stats.
Identities = 30/151 (19%), Positives = 54/151 (35%), Gaps = 19/151 (12%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL---IRLMGSR 560
+ + G G+GK+ L + + + I S+++Q E + L R
Sbjct: 205 VLLYGPPGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPS 263
Query: 561 IVIISETNENDEINAAKIKQMTGGDC----MTARLNYGNTYSESPASFTPFIVPNKHLFV 616
I+ + E D I +++++ +GGD L E+ + + N +
Sbjct: 264 IIFMDEI---DSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATN---RI 317
Query: 617 RNPDDAWWR--RY-IVIPFDKPIANRDASFA 644
D A R R I F P N +A
Sbjct: 318 DILDSALLRPGRIDRKIEF--PPPNEEARLD 346
>gi|114669870|ref|XP_001149504.1| PREDICTED: similar to mSUG1 protein isoform 4 [Pan troglodytes]
Length = 329
Score = 42.4 bits (98), Expect = 0.32, Method: Composition-based stats.
Identities = 30/151 (19%), Positives = 54/151 (35%), Gaps = 19/151 (12%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL---IRLMGSR 560
+ + G G+GK+ L + + + I S+++Q E + L R
Sbjct: 109 VLLYGPPGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPS 167
Query: 561 IVIISETNENDEINAAKIKQMTGGDC----MTARLNYGNTYSESPASFTPFIVPNKHLFV 616
I+ + E D I +++++ +GGD L E+ + + N +
Sbjct: 168 IIFMDEI---DSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATN---RI 221
Query: 617 RNPDDAWWR--RY-IVIPFDKPIANRDASFA 644
D A R R I F P N +A
Sbjct: 222 DILDSALLRPGRIDRKIEF--PPPNEEARLD 250
>gi|114669868|ref|XP_001149361.1| PREDICTED: similar to mSUG1 protein isoform 2 [Pan troglodytes]
Length = 387
Score = 42.4 bits (98), Expect = 0.32, Method: Composition-based stats.
Identities = 30/151 (19%), Positives = 54/151 (35%), Gaps = 19/151 (12%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL---IRLMGSR 560
+ + G G+GK+ L + + + I S+++Q E + L R
Sbjct: 167 VLLYGPPGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPS 225
Query: 561 IVIISETNENDEINAAKIKQMTGGDC----MTARLNYGNTYSESPASFTPFIVPNKHLFV 616
I+ + E D I +++++ +GGD L E+ + + N +
Sbjct: 226 IIFMDEI---DSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATN---RI 279
Query: 617 RNPDDAWWR--RY-IVIPFDKPIANRDASFA 644
D A R R I F P N +A
Sbjct: 280 DILDSALLRPGRIDRKIEF--PPPNEEARLD 308
>gi|62087652|dbj|BAD92273.1| proteasome 26S ATPase subunit 5 variant [Homo sapiens]
Length = 345
Score = 42.4 bits (98), Expect = 0.32, Method: Composition-based stats.
Identities = 30/151 (19%), Positives = 54/151 (35%), Gaps = 19/151 (12%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL---IRLMGSR 560
+ + G G+GK+ L + + + I S+++Q E + L R
Sbjct: 182 VLLYGPPGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPS 240
Query: 561 IVIISETNENDEINAAKIKQMTGGDC----MTARLNYGNTYSESPASFTPFIVPNKHLFV 616
I+ + E D I +++++ +GGD L E+ + + N +
Sbjct: 241 IIFMDEI---DSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATN---RI 294
Query: 617 RNPDDAWWR--RY-IVIPFDKPIANRDASFA 644
D A R R I F P N +A
Sbjct: 295 DILDSALLRPGRIDRKIEF--PPPNEEARLD 323
>gi|50604137|gb|AAH77223.1| Unknown (protein for MGC:79055) [Xenopus laevis]
Length = 414
Score = 42.4 bits (98), Expect = 0.32, Method: Composition-based stats.
Identities = 30/151 (19%), Positives = 54/151 (35%), Gaps = 19/151 (12%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL---IRLMGSR 560
+ + G G+GK+ L + + + I S+++Q E + L R
Sbjct: 194 VLLYGPPGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPS 252
Query: 561 IVIISETNENDEINAAKIKQMTGGDC----MTARLNYGNTYSESPASFTPFIVPNKHLFV 616
I+ + E D I +++++ +GGD L E+ + + N +
Sbjct: 253 IIFMDEI---DSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATN---RI 306
Query: 617 RNPDDAWWR--RY-IVIPFDKPIANRDASFA 644
D A R R I F P N +A
Sbjct: 307 DILDSALLRPGRIDRKIEF--PPPNEEARLD 335
>gi|148236805|ref|NP_001085482.1| proteasome (prosome, macropain) 26S subunit, ATPase, 5 [Xenopus
laevis]
gi|49255977|gb|AAH72829.1| MGC80185 protein [Xenopus laevis]
gi|116284353|gb|AAH45221.1| MGC80185 protein [Xenopus laevis]
Length = 415
Score = 42.4 bits (98), Expect = 0.32, Method: Composition-based stats.
Identities = 30/151 (19%), Positives = 54/151 (35%), Gaps = 19/151 (12%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL---IRLMGSR 560
+ + G G+GK+ L + + + I S+++Q E + L R
Sbjct: 195 VLLYGPPGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPS 253
Query: 561 IVIISETNENDEINAAKIKQMTGGDC----MTARLNYGNTYSESPASFTPFIVPNKHLFV 616
I+ + E D I +++++ +GGD L E+ + + N +
Sbjct: 254 IIFMDEI---DSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATN---RI 307
Query: 617 RNPDDAWWR--RY-IVIPFDKPIANRDASFA 644
D A R R I F P N +A
Sbjct: 308 DILDSALLRPGRIDRKIEF--PPPNEEARLD 336
>gi|13278504|gb|AAH04052.1| Psmc5 protein [Mus musculus]
Length = 306
Score = 42.4 bits (98), Expect = 0.32, Method: Composition-based stats.
Identities = 30/151 (19%), Positives = 54/151 (35%), Gaps = 19/151 (12%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL---IRLMGSR 560
+ + G G+GK+ L + + + I S+++Q E + L R
Sbjct: 86 VLLYGPPGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPS 144
Query: 561 IVIISETNENDEINAAKIKQMTGGDC----MTARLNYGNTYSESPASFTPFIVPNKHLFV 616
I+ + E D I +++++ +GGD L E+ + + N +
Sbjct: 145 IIFMDEI---DSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATN---RI 198
Query: 617 RNPDDAWWR--RY-IVIPFDKPIANRDASFA 644
D A R R I F P N +A
Sbjct: 199 DILDSALLRPGRIDRKIEF--PPPNEEARLD 227
>gi|326933955|ref|XP_003213063.1| PREDICTED: 26S protease regulatory subunit 8-like [Meleagris
gallopavo]
Length = 411
Score = 42.4 bits (98), Expect = 0.32, Method: Composition-based stats.
Identities = 30/151 (19%), Positives = 54/151 (35%), Gaps = 19/151 (12%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL---IRLMGSR 560
+ + G G+GK+ L + + + I S+++Q E + L R
Sbjct: 191 VLLYGPPGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPS 249
Query: 561 IVIISETNENDEINAAKIKQMTGGDC----MTARLNYGNTYSESPASFTPFIVPNKHLFV 616
I+ + E D I +++++ +GGD L E+ + + N +
Sbjct: 250 IIFMDEI---DSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATN---RI 303
Query: 617 RNPDDAWWR--RY-IVIPFDKPIANRDASFA 644
D A R R I F P N +A
Sbjct: 304 DILDSALLRPGRIDRKIEF--PPPNEEARLD 332
>gi|54696318|gb|AAV38531.1| proteasome (prosome, macropain) 26S subunit, ATPase, 5 [synthetic
construct]
Length = 407
Score = 42.4 bits (98), Expect = 0.32, Method: Composition-based stats.
Identities = 30/151 (19%), Positives = 54/151 (35%), Gaps = 19/151 (12%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL---IRLMGSR 560
+ + G G+GK+ L + + + I S+++Q E + L R
Sbjct: 186 VLLYGPPGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPS 244
Query: 561 IVIISETNENDEINAAKIKQMTGGDC----MTARLNYGNTYSESPASFTPFIVPNKHLFV 616
I+ + E D I +++++ +GGD L E+ + + N +
Sbjct: 245 IIFMDEI---DSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATN---RI 298
Query: 617 RNPDDAWWR--RY-IVIPFDKPIANRDASFA 644
D A R R I F P N +A
Sbjct: 299 DILDSALLRPGRIDRKIEF--PPPNEEARLD 327
>gi|2661071|gb|AAB88187.1| similar to 26S proteasome subunit p45 [Homo sapiens]
Length = 280
Score = 42.4 bits (98), Expect = 0.32, Method: Composition-based stats.
Identities = 30/151 (19%), Positives = 54/151 (35%), Gaps = 19/151 (12%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL---IRLMGSR 560
+ + G G+GK+ L + + + I S+++Q E + L R
Sbjct: 60 VLLYGPPGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPS 118
Query: 561 IVIISETNENDEINAAKIKQMTGGDC----MTARLNYGNTYSESPASFTPFIVPNKHLFV 616
I+ + E D I +++++ +GGD L E+ + + N +
Sbjct: 119 IIFMDEI---DSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATN---RI 172
Query: 617 RNPDDAWWR--RY-IVIPFDKPIANRDASFA 644
D A R R I F P N +A
Sbjct: 173 DILDSALLRPGRIDRKIEF--PPPNEEARLD 201
>gi|73965197|ref|XP_861297.1| PREDICTED: similar to for proteasomal ATPase (SUG1) isoform 3
[Canis familiaris]
gi|114669880|ref|XP_001149643.1| PREDICTED: similar to mSUG1 protein isoform 6 [Pan troglodytes]
Length = 327
Score = 42.4 bits (98), Expect = 0.32, Method: Composition-based stats.
Identities = 30/151 (19%), Positives = 54/151 (35%), Gaps = 19/151 (12%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL---IRLMGSR 560
+ + G G+GK+ L + + + I S+++Q E + L R
Sbjct: 107 VLLYGPPGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPS 165
Query: 561 IVIISETNENDEINAAKIKQMTGGDC----MTARLNYGNTYSESPASFTPFIVPNKHLFV 616
I+ + E D I +++++ +GGD L E+ + + N +
Sbjct: 166 IIFMDEI---DSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATN---RI 219
Query: 617 RNPDDAWWR--RY-IVIPFDKPIANRDASFA 644
D A R R I F P N +A
Sbjct: 220 DILDSALLRPGRIDRKIEF--PPPNEEARLD 248
>gi|51230594|ref|NP_001003740.1| 26S protease regulatory subunit 8 [Danio rerio]
gi|50603847|gb|AAH78375.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 5 [Danio
rerio]
gi|182891110|gb|AAI65834.1| Psmc5 protein [Danio rerio]
Length = 406
Score = 42.4 bits (98), Expect = 0.32, Method: Composition-based stats.
Identities = 30/151 (19%), Positives = 54/151 (35%), Gaps = 19/151 (12%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL---IRLMGSR 560
+ + G G+GK+ L + + + I S+++Q E + L R
Sbjct: 186 VLLYGPPGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPS 244
Query: 561 IVIISETNENDEINAAKIKQMTGGDC----MTARLNYGNTYSESPASFTPFIVPNKHLFV 616
I+ + E D I +++++ +GGD L E+ + + N +
Sbjct: 245 IIFMDEI---DSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATN---RI 298
Query: 617 RNPDDAWWR--RY-IVIPFDKPIANRDASFA 644
D A R R I F P N +A
Sbjct: 299 DILDSALLRPGRIDRKIEF--PPPNEEARLD 327
>gi|83776472|dbj|BAE66591.1| unnamed protein product [Aspergillus oryzae]
Length = 843
Score = 42.4 bits (98), Expect = 0.32, Method: Composition-based stats.
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 486 FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFG 526
+ A G + + +RG GSGK+T +N++ G
Sbjct: 233 VQSWLRNAFAG-TGEHKLLVLRGPAGSGKTTTINILSQTLG 272
>gi|47219715|emb|CAG12637.1| unnamed protein product [Tetraodon nigroviridis]
Length = 406
Score = 42.4 bits (98), Expect = 0.32, Method: Composition-based stats.
Identities = 30/151 (19%), Positives = 54/151 (35%), Gaps = 19/151 (12%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL---IRLMGSR 560
+ + G G+GK+ L + + + I S+++Q E + L R
Sbjct: 186 VLLYGPPGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPS 244
Query: 561 IVIISETNENDEINAAKIKQMTGGDC----MTARLNYGNTYSESPASFTPFIVPNKHLFV 616
I+ + E D I +++++ +GGD L E+ + + N +
Sbjct: 245 IIFMDEI---DSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATN---RI 298
Query: 617 RNPDDAWWR--RY-IVIPFDKPIANRDASFA 644
D A R R I F P N +A
Sbjct: 299 DILDSALLRPGRIDRKIEF--PPPNEEARLD 327
>gi|12846001|dbj|BAB26990.1| unnamed protein product [Mus musculus]
Length = 406
Score = 42.4 bits (98), Expect = 0.32, Method: Composition-based stats.
Identities = 30/151 (19%), Positives = 54/151 (35%), Gaps = 19/151 (12%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL---IRLMGSR 560
+ + G G+GK+ L + + + I S+++Q E + L R
Sbjct: 186 VLLYGPPGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPS 244
Query: 561 IVIISETNENDEINAAKIKQMTGGDC----MTARLNYGNTYSESPASFTPFIVPNKHLFV 616
I+ + E D I +++++ +GGD L E+ + + N +
Sbjct: 245 IIFMDEI---DSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATN---RI 298
Query: 617 RNPDDAWWR--RY-IVIPFDKPIANRDASFA 644
D A R R I F P N +A
Sbjct: 299 DILDSALLRPGRIDRKIEF--PPPNEEARLD 327
>gi|2564007|dbj|BAA22935.1| proteasome p45/SUG [Rattus norvegicus]
Length = 374
Score = 42.4 bits (98), Expect = 0.32, Method: Composition-based stats.
Identities = 30/151 (19%), Positives = 54/151 (35%), Gaps = 19/151 (12%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL---IRLMGSR 560
+ + G G+GK+ L + + + I S+++Q E + L R
Sbjct: 154 VLLYGPPGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPS 212
Query: 561 IVIISETNENDEINAAKIKQMTGGDC----MTARLNYGNTYSESPASFTPFIVPNKHLFV 616
I+ + E D I +++++ +GGD L E+ + + N +
Sbjct: 213 IIFMDEI---DSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATN---RI 266
Query: 617 RNPDDAWWR--RY-IVIPFDKPIANRDASFA 644
D A R R I F P N +A
Sbjct: 267 DILDSALLRPGRIDRKIEF--PPPNEEARLD 295
>gi|7110703|ref|NP_032976.1| 26S protease regulatory subunit 8 [Mus musculus]
gi|13592141|ref|NP_112411.1| 26S protease regulatory subunit 8 [Rattus norvegicus]
gi|24497435|ref|NP_002796.4| 26S protease regulatory subunit 8 isoform 1 [Homo sapiens]
gi|27806101|ref|NP_776866.1| 26S protease regulatory subunit 8 [Bos taurus]
gi|47522792|ref|NP_999148.1| 26S protease regulatory subunit 8 [Sus scrofa]
gi|73965193|ref|XP_537597.2| PREDICTED: similar to for proteasomal ATPase (SUG1) isoform 1
[Canis familiaris]
gi|114669860|ref|XP_001150043.1| PREDICTED: 26S protease regulatory subunit 8 isoform 10 [Pan
troglodytes]
gi|114669862|ref|XP_001150100.1| PREDICTED: similar to mSUG1 protein isoform 11 [Pan troglodytes]
gi|149723381|ref|XP_001500958.1| PREDICTED: proteasome (prosome, macropain) 26S subunit, ATPase, 5
[Equus caballus]
gi|291406361|ref|XP_002719523.1| PREDICTED: protease (prosome, macropain) 26S subunit, ATPase 5-like
[Oryctolagus cuniculus]
gi|296201787|ref|XP_002806873.1| PREDICTED: LOW QUALITY PROTEIN: 26S protease regulatory subunit
8-like [Callithrix jacchus]
gi|297273391|ref|XP_001108909.2| PREDICTED: 26S protease regulatory subunit 8-like isoform 1 [Macaca
mulatta]
gi|301778301|ref|XP_002924560.1| PREDICTED: 26S protease regulatory subunit 8-like [Ailuropoda
melanoleuca]
gi|332243114|ref|XP_003270727.1| PREDICTED: 26S protease regulatory subunit 8 [Nomascus leucogenys]
gi|49065781|sp|P62197|PRS8_PIG RecName: Full=26S protease regulatory subunit 8; AltName: Full=26S
proteasome AAA-ATPase subunit RPT6; AltName:
Full=Proteasome 26S subunit ATPase 5; AltName:
Full=Proteasome subunit p45; AltName: Full=Tat-binding
protein homolog 10; Short=TBP10; AltName: Full=p45/SUG
gi|49065782|sp|P62198|PRS8_RAT RecName: Full=26S protease regulatory subunit 8; AltName: Full=26S
proteasome AAA-ATPase subunit RPT6; AltName:
Full=Proteasome 26S subunit ATPase 5; AltName:
Full=Proteasome subunit p45; AltName: Full=Thyroid
hormone receptor-interacting protein 1; Short=TRIP1;
AltName: Full=p45/SUG
gi|49065819|sp|P62195|PRS8_HUMAN RecName: Full=26S protease regulatory subunit 8; AltName: Full=26S
proteasome AAA-ATPase subunit RPT6; AltName:
Full=Proteasome 26S subunit ATPase 5; AltName:
Full=Proteasome subunit p45; AltName: Full=Thyroid
hormone receptor-interacting protein 1; Short=TRIP1;
AltName: Full=p45/SUG
gi|49065820|sp|P62196|PRS8_MOUSE RecName: Full=26S protease regulatory subunit 8; AltName: Full=26S
proteasome AAA-ATPase subunit RPT6; AltName:
Full=Proteasome 26S subunit ATPase 5; AltName:
Full=Proteasome subunit p45; AltName: Full=p45/SUG;
Short=mSUG1
gi|68630545|sp|P62194|PRS8_BOVIN RecName: Full=26S protease regulatory subunit 8; AltName: Full=26S
proteasome AAA-ATPase subunit RPT6; AltName:
Full=Proteasome 26S subunit ATPase 5; AltName:
Full=Proteasome subunit p45; AltName: Full=p45/SUG
gi|1165125|emb|CAA90961.1| mSUG1 protein [Mus musculus]
gi|1262433|emb|CAA61863.1| 26S protease subunit [Sus scrofa]
gi|1395177|dbj|BAA11938.1| proteasomal ATPase (rat SUG1) [Rattus norvegicus]
gi|2564003|dbj|BAA22933.1| proteasome p45/SUG [Rattus norvegicus]
gi|3193258|gb|AAC19266.1| proteasome subunit SUG1 [Bos taurus]
gi|12804959|gb|AAH01932.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 5 [Homo
sapiens]
gi|32425744|gb|AAH02367.3| Proteasome (prosome, macropain) 26S subunit, ATPase, 5 [Homo
sapiens]
gi|37231718|gb|AAH58462.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 5 [Rattus
norvegicus]
gi|74183188|dbj|BAE22539.1| unnamed protein product [Mus musculus]
gi|74216976|dbj|BAE26599.1| unnamed protein product [Mus musculus]
gi|90075232|dbj|BAE87296.1| unnamed protein product [Macaca fascicularis]
gi|119614678|gb|EAW94272.1| proteasome (prosome, macropain) 26S subunit, ATPase, 5, isoform
CRA_c [Homo sapiens]
gi|123242266|emb|CAM23783.1| protease (prosome, macropain) 26S subunit, ATPase 5 [Mus musculus]
gi|123982762|gb|ABM83122.1| proteasome (prosome, macropain) 26S subunit, ATPase, 5 [synthetic
construct]
gi|123997431|gb|ABM86317.1| proteasome (prosome, macropain) 26S subunit, ATPase, 5 [synthetic
construct]
gi|148702335|gb|EDL34282.1| protease (prosome, macropain) 26S subunit, ATPase 5, isoform CRA_a
[Mus musculus]
gi|148877455|gb|AAI46196.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 5 [Bos taurus]
gi|158257188|dbj|BAF84567.1| unnamed protein product [Homo sapiens]
gi|208967154|dbj|BAG73591.1| proteasome (prosome, macropain) 26S subunit ATPase 5 [synthetic
construct]
gi|296476226|gb|DAA18341.1| 26S protease regulatory subunit 8 [Bos taurus]
Length = 406
Score = 42.4 bits (98), Expect = 0.32, Method: Composition-based stats.
Identities = 30/151 (19%), Positives = 54/151 (35%), Gaps = 19/151 (12%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL---IRLMGSR 560
+ + G G+GK+ L + + + I S+++Q E + L R
Sbjct: 186 VLLYGPPGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPS 244
Query: 561 IVIISETNENDEINAAKIKQMTGGDC----MTARLNYGNTYSESPASFTPFIVPNKHLFV 616
I+ + E D I +++++ +GGD L E+ + + N +
Sbjct: 245 IIFMDEI---DSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATN---RI 298
Query: 617 RNPDDAWWR--RY-IVIPFDKPIANRDASFA 644
D A R R I F P N +A
Sbjct: 299 DILDSALLRPGRIDRKIEF--PPPNEEARLD 327
>gi|312596881|ref|NP_001186092.1| 26S protease regulatory subunit 8 isoform 2 [Homo sapiens]
gi|114669874|ref|XP_001149920.1| PREDICTED: similar to mSUG1 protein isoform 9 [Pan troglodytes]
gi|297273393|ref|XP_002800611.1| PREDICTED: 26S protease regulatory subunit 8-like isoform 3 [Macaca
mulatta]
gi|332848822|ref|XP_001149845.2| PREDICTED: 26S protease regulatory subunit 8 isoform 8 [Pan
troglodytes]
gi|1262435|emb|CAA61864.1| put. 26S protease subunit [Sus scrofa]
gi|119614676|gb|EAW94270.1| proteasome (prosome, macropain) 26S subunit, ATPase, 5, isoform
CRA_b [Homo sapiens]
gi|119614677|gb|EAW94271.1| proteasome (prosome, macropain) 26S subunit, ATPase, 5, isoform
CRA_b [Homo sapiens]
gi|158254952|dbj|BAF83447.1| unnamed protein product [Homo sapiens]
Length = 398
Score = 42.4 bits (98), Expect = 0.32, Method: Composition-based stats.
Identities = 30/151 (19%), Positives = 54/151 (35%), Gaps = 19/151 (12%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL---IRLMGSR 560
+ + G G+GK+ L + + + I S+++Q E + L R
Sbjct: 178 VLLYGPPGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPS 236
Query: 561 IVIISETNENDEINAAKIKQMTGGDC----MTARLNYGNTYSESPASFTPFIVPNKHLFV 616
I+ + E D I +++++ +GGD L E+ + + N +
Sbjct: 237 IIFMDEI---DSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATN---RI 290
Query: 617 RNPDDAWWR--RY-IVIPFDKPIANRDASFA 644
D A R R I F P N +A
Sbjct: 291 DILDSALLRPGRIDRKIEF--PPPNEEARLD 319
>gi|976227|dbj|BAA07919.1| 26S proteasome subunit p45 [Homo sapiens]
gi|1096205|prf||2111282A 26S proteasome
Length = 406
Score = 42.4 bits (98), Expect = 0.32, Method: Composition-based stats.
Identities = 30/151 (19%), Positives = 54/151 (35%), Gaps = 19/151 (12%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL---IRLMGSR 560
+ + G G+GK+ L + + + I S+++Q E + L R
Sbjct: 186 VLLYGPPGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPS 244
Query: 561 IVIISETNENDEINAAKIKQMTGGDC----MTARLNYGNTYSESPASFTPFIVPNKHLFV 616
I+ + E D I +++++ +GGD L E+ + + N +
Sbjct: 245 IIFMDEI---DSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATN---RI 298
Query: 617 RNPDDAWWR--RY-IVIPFDKPIANRDASFA 644
D A R R I F P N +A
Sbjct: 299 DILDSALLRPGRIDRKIEF--PPPNEEARLD 327
>gi|322800911|gb|EFZ21743.1| hypothetical protein SINV_03788 [Solenopsis invicta]
Length = 1243
Score = 42.4 bits (98), Expect = 0.32, Method: Composition-based stats.
Identities = 11/76 (14%), Positives = 26/76 (34%), Gaps = 5/76 (6%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
WI + ++ + Y+ Y + K +ST +KQ ++
Sbjct: 190 MWIKTHLEEDPDVSLPKQEVYDEYNMYCTRN---SMKPLSTADFGKVMKQ--VYPRVRPR 244
Query: 755 KIEKEWKSKRIIKGLK 770
++ S+ G++
Sbjct: 245 RLGTRGNSRYCYAGMR 260
>gi|218282038|ref|ZP_03488343.1| hypothetical protein EUBIFOR_00914 [Eubacterium biforme DSM 3989]
gi|218216956|gb|EEC90494.1| hypothetical protein EUBIFOR_00914 [Eubacterium biforme DSM 3989]
Length = 500
Score = 42.4 bits (98), Expect = 0.32, Method: Composition-based stats.
Identities = 34/172 (19%), Positives = 54/172 (31%), Gaps = 30/172 (17%)
Query: 452 ITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGG 511
I+K G +E + F L Y + EE++ Y G + GN + G G
Sbjct: 277 ISKMNGKELIEDVNTVYFDHLSFRYIDQEELIHY----NG-SFEKGNIYRIL----GKNG 327
Query: 512 SGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEND 571
+GKST + +I FGN Y + I + + + + + E
Sbjct: 328 TGKSTFIQVILGVFGNDYGGRILVNSIDMKKI--------DMNYFIFKNVAVC--LQEPL 377
Query: 572 EINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAW 623
I + + D R F N + N DD
Sbjct: 378 IIEDTIERNLIPNDNYNGRYL-----EYLLKGF------NMVEIIDNMDDGI 418
>gi|123449730|ref|XP_001313581.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121895470|gb|EAY00652.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 194
Score = 42.4 bits (98), Expect = 0.32, Method: Composition-based stats.
Identities = 30/189 (15%), Positives = 59/189 (31%), Gaps = 16/189 (8%)
Query: 560 RIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV 616
++++ +E D +N+ +K + Y + + + N
Sbjct: 2 KLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNTVPMK 61
Query: 617 RNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-I 675
D RRY+V+ +D + L T + + I
Sbjct: 62 LESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQI 117
Query: 676 PEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIST 735
P + E + Y+ +ID+ + + SL Y +Y ++ Y S
Sbjct: 118 PHTEERQTLLEANKS-VYELFIDETDFVSLDER----SLYDEYKQYCQE---YGYMAASK 169
Query: 736 RTVTLNLKQ 744
RT N+K
Sbjct: 170 RTFLANVKN 178
>gi|225022941|ref|ZP_03712133.1| hypothetical protein CORMATOL_02987 [Corynebacterium matruchotii
ATCC 33806]
gi|224944164|gb|EEG25373.1| hypothetical protein CORMATOL_02987 [Corynebacterium matruchotii
ATCC 33806]
Length = 326
Score = 42.4 bits (98), Expect = 0.32, Method: Composition-based stats.
Identities = 38/215 (17%), Positives = 71/215 (33%), Gaps = 34/215 (15%)
Query: 450 LYITKSTG---TPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHI 506
+ K T +E P +V+ E ++ D + N+ + +
Sbjct: 75 DLVYKVTPERRLNDMELAPIPR--RVVTELIEEQQRGDLLR---SYGIEPRNR----LLL 125
Query: 507 RGVGGSGKSTLMNLIKY-AFGNQYVINAE--ASDIMQNRPPEAGKANPSLIRLMGSRIVI 563
G G+GK+T+ +I YVI E S + A +R ++
Sbjct: 126 SGPPGNGKTTIAEVIAAELMLPLYVIRYENIISSFLGETAARLDDA-FEFVRTR-RCVLF 183
Query: 564 ISET-----NENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRN 618
E +DE +IK++ + + FI H +
Sbjct: 184 FDELDTIAKERSDEHETGEIKRVVSTFLLQIDRL---------PAHVIFIGATNHSEL-- 232
Query: 619 PDDAWWRRYIV-IPFDKPIANRDASFAQKLETKYT 652
D A WRR+ + + P + F +KL +++
Sbjct: 233 LDRAAWRRFQIKVKLATPTRAQAVRFLEKLASRFG 267
>gi|123192730|ref|XP_001282658.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121840394|gb|EAX69728.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 211
Score = 42.4 bits (98), Expect = 0.32, Method: Composition-based stats.
Identities = 36/209 (17%), Positives = 66/209 (31%), Gaps = 19/209 (9%)
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGN 595
M N GK N S+ + +++ +E D +N+ +K + Y +
Sbjct: 1 MTNLENICGKFNSSIENMK---LIVCNELKSIDTTKVLNSDALKSLITDKVGVVERKYKD 57
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
+ + N D RRY+V+ +D + L T +
Sbjct: 58 QRVCENVANFIMVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDF 113
Query: 656 KKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
+ IP + E + Y+ +ID+ + + SL
Sbjct: 114 YNHLFSYFMTLDISKFNPRQIPHTEERQTLLEANKS-VYELFIDETDFVSLDER----SL 168
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLK 743
Y +Y ++ Y S RT N+K
Sbjct: 169 YDEYKQYCQE---YGYMAASKRTFLANVK 194
>gi|123145441|ref|XP_001277544.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121821678|gb|EAX64614.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 211
Score = 42.4 bits (98), Expect = 0.32, Method: Composition-based stats.
Identities = 37/209 (17%), Positives = 67/209 (32%), Gaps = 19/209 (9%)
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGN 595
M N GK N S+ + +++ +E D +N+ +K + Y +
Sbjct: 1 MTNIENICGKFNSSIENMK---LIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKD 57
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
+ + N D RRY+V+ +D + L T +
Sbjct: 58 QRVCENVANFIMVSNNVVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDF 113
Query: 656 KKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
+ IP + E + Y+ +ID+ + + SL
Sbjct: 114 YNHLFSYFMTLDISKFNPRQIPHTEERQTLLEANKS-VYELFIDETDFVSLDER----SL 168
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLK 743
SY +Y ++ Y S RT N+K
Sbjct: 169 YDSYKQYCQE---YGYMAASKRTFLANVK 194
>gi|261367914|ref|ZP_05980797.1| putative virulence-associated protein E [Subdoligranulum variabile
DSM 15176]
gi|282570727|gb|EFB76262.1| putative virulence-associated protein E [Subdoligranulum variabile
DSM 15176]
gi|295104410|emb|CBL01954.1| Predicted P-loop ATPase and inactivated derivatives
[Faecalibacterium prausnitzii SL3/3]
Length = 445
Score = 42.4 bits (98), Expect = 0.32, Method: Composition-based stats.
Identities = 45/263 (17%), Positives = 78/263 (29%), Gaps = 36/263 (13%)
Query: 470 LDLVSGYFESEEVMDYFTRCVGMALLG--------GNKAQRFIHIRGVGGSGKSTLMNLI 521
+ +F +V DY + + LLG G+K + + + G G+GKST L+
Sbjct: 125 IRFCLRHFLGADVDDYTYEALKLFLLGAITRAFKPGSKFEIMLCLVGGQGAGKSTFFRLL 184
Query: 522 KYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM 581
+ +L G I+ +SE + A K +
Sbjct: 185 A----------VRDEWFSDDLRKLDDD--NVYRKLQGHWIIEMSEM-----MATANAKSI 227
Query: 582 TGGDCMTARLN--YGNTYSESP---ASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI 636
+R Y Y P F + L D + RR+ IP
Sbjct: 228 EEIKSFLSRQKEVYKIPYETHPADRPRQCVFGGTSNALDFLPLDRSGNRRF--IPVMVYP 285
Query: 637 ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQG---TDTY 693
+ + ++ W + ++ Y S + + +E ++ DT
Sbjct: 286 EQAEVHILEDEAASRAYISQMWA-EAMEIYRSGRYKLSFSPAMQRYLKEHQRDFMPEDTK 344
Query: 694 QAWIDDCCDIGENLWEESHSLAK 716
I D S L K
Sbjct: 345 AGMIQAYLDKYTGETVCSKQLYK 367
>gi|195764992|gb|ACG50803.1| putative non-structural protein [Dysaphis plantaginea densovirus]
Length = 710
Score = 42.4 bits (98), Expect = 0.33, Method: Composition-based stats.
Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 10/100 (10%)
Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY-SESPASFTPFI 608
N S G R+V+ +E N + + KIK++ GGD + Y + P F+
Sbjct: 597 NFSWADGAGKRLVLWNEPN-YETFHVEKIKELLGGDTTRVHVKYKGDQPLQGPP---IFL 652
Query: 609 VPNKHLFVRNPDDAWWRRYIVIPFD-KPIANRDASFAQKL 647
+ N L + N D A+ R + + P + + +KL
Sbjct: 653 LTNNTLSICN-DPAFADRLVTYEWKSAPFLKQ---YNKKL 688
>gi|265763837|ref|ZP_06092405.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
gi|263256445|gb|EEZ27791.1| conserved hypothetical protein [Bacteroides sp. 2_1_16]
Length = 1017
Score = 42.4 bits (98), Expect = 0.33, Method: Composition-based stats.
Identities = 42/248 (16%), Positives = 80/248 (32%), Gaps = 36/248 (14%)
Query: 509 VGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN 568
G SGKS + L++ Y+ + + N L V I +
Sbjct: 722 NGRSGKSLVGELMRNIIPTAYIPGKRSDLFNDQFVWNDIQENTKL--------VFIDDVL 773
Query: 569 ENDEINAAKIKQMTGGDCMTARLNYGN----TYSESPASFTPFIVPNKHLFVRNPDDAWW 624
+N +TG + G ++ SP +I N +R ++
Sbjct: 774 QNFNF-EFLFPNITG--DWSVNYKGGRRITLPFARSP---KMYIATNH--AIRGSGSSYT 825
Query: 625 RRYIVIPF-------DKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPE 677
R ++ F KP+ + F + + + V+ Y++ G+ E
Sbjct: 826 DRQWLLAFSDFYNDTHKPVDDFGVLFFSEWDFEQWNLTWNLLANCVQLYLTYGVVQAPGE 885
Query: 678 VCLKAKEEERQGT-DTYQAWIDDCCDIGE--NLWEESHSLAKSYSEYREQELNYDRKRIS 734
+ + RQ +T +W D+ E N+ L ++ +Y Q+ RK +S
Sbjct: 886 RLEQ--RKLRQEMGETLISWADEYFSGEEHLNVRLPRKDLYDAFCQYDNQQ----RKFVS 939
Query: 735 TRTVTLNL 742
Sbjct: 940 PTAFKKKF 947
>gi|305682073|ref|ZP_07404877.1| ATPase, AAA family [Corynebacterium matruchotii ATCC 14266]
gi|305658546|gb|EFM48049.1| ATPase, AAA family [Corynebacterium matruchotii ATCC 14266]
Length = 320
Score = 42.4 bits (98), Expect = 0.33, Method: Composition-based stats.
Identities = 38/215 (17%), Positives = 71/215 (33%), Gaps = 34/215 (15%)
Query: 450 LYITKSTG---TPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHI 506
+ K T +E P +V+ E ++ D + N+ + +
Sbjct: 69 DLVYKVTPERRLNDMELAPIPR--RVVTELIEEQQRGDLLR---SYGIEPRNR----LLL 119
Query: 507 RGVGGSGKSTLMNLIKY-AFGNQYVINAE--ASDIMQNRPPEAGKANPSLIRLMGSRIVI 563
G G+GK+T+ +I YVI E S + A +R ++
Sbjct: 120 SGPPGNGKTTIAEVIAAELMLPLYVIRYENIISSFLGETAARLDDA-FEFVRTR-RCVLF 177
Query: 564 ISET-----NENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRN 618
E +DE +IK++ + + FI H +
Sbjct: 178 FDELDTIAKERSDEHETGEIKRVVSTFLLQIDRL---------PAHVIFIGATNHSEL-- 226
Query: 619 PDDAWWRRYIV-IPFDKPIANRDASFAQKLETKYT 652
D A WRR+ + + P + F +KL +++
Sbjct: 227 LDRAAWRRFQIKVKLATPTRAQAVRFLEKLASRFG 261
>gi|123153529|ref|XP_001277835.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121822810|gb|EAX64905.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 211
Score = 42.4 bits (98), Expect = 0.33, Method: Composition-based stats.
Identities = 37/209 (17%), Positives = 66/209 (31%), Gaps = 19/209 (9%)
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGN 595
M N GK N S+ + +++ +E D +N+ +K + Y +
Sbjct: 1 MTNLENICGKFNSSIENMK---LIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKD 57
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
+ + N D RRY+V+ +D + L T
Sbjct: 58 QRVCENVANFIMVSNNAVPMKLESSD---RRYVVVR-TSEAHMQDTEYFDDLAETLTPNF 113
Query: 656 KKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
+ IP + E + Y+ +ID+ + + SL
Sbjct: 114 YNHLFSYFMTLDISKFNPRQIPHTEERQTLLEANKS-VYELFIDET----DFECLDERSL 168
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLK 743
SY +Y ++ Y S RT N+K
Sbjct: 169 YDSYKQYCQE---YGYMTASKRTFLANVK 194
>gi|204324151|gb|ACI01073.1| putative non-structural protein [Dysaphis plantaginea densovirus]
Length = 710
Score = 42.4 bits (98), Expect = 0.33, Method: Composition-based stats.
Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 10/100 (10%)
Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY-SESPASFTPFI 608
N S G R+V+ +E N + + KIK++ GGD + Y + P F+
Sbjct: 597 NFSWADGAGKRLVLWNEPN-YETFHVEKIKELLGGDTTRVHVKYKGDQPLQGPP---IFL 652
Query: 609 VPNKHLFVRNPDDAWWRRYIVIPFD-KPIANRDASFAQKL 647
+ N L + N D A+ R + + P + + +KL
Sbjct: 653 LTNNTLSICN-DPAFADRLVTYEWKSAPFLKQ---YNKKL 688
>gi|60681803|ref|YP_211947.1| putative DNA primase [Bacteroides fragilis NCTC 9343]
gi|60493237|emb|CAH08019.1| putative DNA primase [Bacteroides fragilis NCTC 9343]
Length = 1017
Score = 42.4 bits (98), Expect = 0.33, Method: Composition-based stats.
Identities = 42/248 (16%), Positives = 80/248 (32%), Gaps = 36/248 (14%)
Query: 509 VGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN 568
G SGKS + L++ Y+ + + N L V I +
Sbjct: 722 NGRSGKSLVGELMRNIIPTAYIPGKRSDLFNDQFVWNDIQENTKL--------VFIDDVL 773
Query: 569 ENDEINAAKIKQMTGGDCMTARLNYGN----TYSESPASFTPFIVPNKHLFVRNPDDAWW 624
+N +TG + G ++ SP +I N +R ++
Sbjct: 774 QNFNF-EFLFPNITG--DWSVNYKGGRRITLPFARSP---KMYIATNH--AIRGSGSSYT 825
Query: 625 RRYIVIPF-------DKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPE 677
R ++ F KP+ + F + + + V+ Y++ G+ E
Sbjct: 826 DRQWLLAFSDFYNDTHKPVDDFGVLFFSEWDFEQWNLTWNLLANCVQLYLTYGVVQAPGE 885
Query: 678 VCLKAKEEERQGT-DTYQAWIDDCCDIGE--NLWEESHSLAKSYSEYREQELNYDRKRIS 734
+ + RQ +T +W D+ E N+ L ++ +Y Q+ RK +S
Sbjct: 886 RLEQ--RKLRQEMGETLISWADEYFSGEEHLNVRLPRKDLYDAFCQYDNQQ----RKFVS 939
Query: 735 TRTVTLNL 742
Sbjct: 940 PTAFKKKF 947
>gi|160944424|ref|ZP_02091652.1| hypothetical protein FAEPRAM212_01934 [Faecalibacterium prausnitzii
M21/2]
gi|158444206|gb|EDP21210.1| hypothetical protein FAEPRAM212_01934 [Faecalibacterium prausnitzii
M21/2]
Length = 445
Score = 42.4 bits (98), Expect = 0.33, Method: Composition-based stats.
Identities = 45/263 (17%), Positives = 78/263 (29%), Gaps = 36/263 (13%)
Query: 470 LDLVSGYFESEEVMDYFTRCVGMALLG--------GNKAQRFIHIRGVGGSGKSTLMNLI 521
+ +F +V DY + + LLG G+K + + + G G+GKST L+
Sbjct: 125 IRFCLRHFLGADVDDYTYEALKLFLLGAITRAFKPGSKFEIMLCLVGGQGAGKSTFFRLL 184
Query: 522 KYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM 581
+ +L G I+ +SE + A K +
Sbjct: 185 A----------VRDEWFSDDLRKLDDD--NVYRKLQGHWIIEMSEM-----MATANAKSI 227
Query: 582 TGGDCMTARLN--YGNTYSESP---ASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI 636
+R Y Y P F + L D + RR+ IP
Sbjct: 228 EEIKSFLSRQKEVYKIPYETHPADRPRQCVFGGTSNALDFLPLDRSGNRRF--IPVMVYP 285
Query: 637 ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQG---TDTY 693
+ + ++ W + ++ Y S + + +E ++ DT
Sbjct: 286 EQAEVHILEDEAASRAYISQMWA-EAMEIYRSGRYKLSFSPAMQRYLKEHQRDFMPEDTK 344
Query: 694 QAWIDDCCDIGENLWEESHSLAK 716
I D S L K
Sbjct: 345 AGMIQAYLDKYTGETVCSKQLYK 367
>gi|123490202|ref|XP_001325562.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121908463|gb|EAY13339.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 211
Score = 42.4 bits (98), Expect = 0.33, Method: Composition-based stats.
Identities = 36/209 (17%), Positives = 66/209 (31%), Gaps = 19/209 (9%)
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGN 595
M N GK N S+ + +++ +E D +N+ +K + Y +
Sbjct: 1 MTNLENICGKFNSSIENMK---LIVCNELQSIDTTKVLNSDALKSLLTDKVGVVERKYKD 57
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
+ + N D RRY+V+ +D + L T +
Sbjct: 58 QRVCENVANFIMVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDF 113
Query: 656 KKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
+ IP + E + Y+ +ID+ + + SL
Sbjct: 114 YNHLFSYFMTLDISKFNPRQIPHTEERQTLLEANKS-VYELFIDETDFVSLDEK----SL 168
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLK 743
Y +Y ++ Y S RT N+K
Sbjct: 169 YDEYKQYCQE---YGYMAASKRTFLANVK 194
>gi|123239780|ref|XP_001287681.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121855539|gb|EAX74751.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 211
Score = 42.4 bits (98), Expect = 0.33, Method: Composition-based stats.
Identities = 37/210 (17%), Positives = 66/210 (31%), Gaps = 19/210 (9%)
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGN 595
M N GK N S+ + +++ +E D +N+ +K + Y +
Sbjct: 1 MTNLENICGKFNSSIENMK---LIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKD 57
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
+ + N D RRY+V+ +D + L T
Sbjct: 58 QRVCENVANFIMVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTPNF 113
Query: 656 KKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
+ IP + E + Y+ +ID+ + + SL
Sbjct: 114 YNHLFSYFMTLDISKFNPRQIPHTEERQTLLEANKS-VYELFIDET----DFECLDERSL 168
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLKQ 744
SY +Y ++ Y S RT N+K
Sbjct: 169 YDSYKQYCQE---YGYMAASKRTFLANVKN 195
>gi|289656454|gb|ADD14047.1| E1 protein [Human papillomavirus type 114]
Length = 625
Score = 42.4 bits (98), Expect = 0.34, Method: Composition-based stats.
Identities = 19/160 (11%), Positives = 47/160 (29%), Gaps = 19/160 (11%)
Query: 478 ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
+ E + + L G + + G +GKS + G +
Sbjct: 423 QGIEFIRFMGAL--KQFLKGTPKKSCLVFYGPSDTGKSLFCMSLLNFLGGAVISFVN--- 477
Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK-IKQMTGGDCMTARLNYGNT 596
++ L L ++I ++ + + ++ + G+ ++ + N
Sbjct: 478 ---------SPSHFWLSPLADTKIGLLDDATYQCWVYIDTYLRSVLDGNTISIDRKHKNL 528
Query: 597 YS-ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP 635
+ P I N + + R ++ PF
Sbjct: 529 TQLKCPP---LLITTNVNPEADDTFKYLKSRMVMFPFPNK 565
>gi|260687142|ref|YP_003218276.1| hypothetical protein CDR20291_1786 [Clostridium difficile R20291]
gi|260213159|emb|CBE04604.1| putative uncharacterized protein [Clostridium difficile R20291]
Length = 442
Score = 42.4 bits (98), Expect = 0.34, Method: Composition-based stats.
Identities = 40/245 (16%), Positives = 69/245 (28%), Gaps = 28/245 (11%)
Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539
E + + + A G K + + + G G+GKST L+
Sbjct: 140 EALKLFLLGAISRAFQPGCKFEIMLCLVGGQGAGKSTFFRLLA----------VRDEWFS 189
Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLN--YGNTY 597
+ +L G I+ +SE + A K + +R Y Y
Sbjct: 190 DDLRKLDDD--NVYRKLQGHWIIEMSEM-----MATANAKSIEEIKSFLSRQKEVYKIPY 242
Query: 598 SESP---ASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLE 654
P F + L D + RR+ IP + +
Sbjct: 243 ETHPADRPRQCVFGGTSNALDFLPLDRSGNRRF--IPVMVYPEQAEVHILEDEAASRAYI 300
Query: 655 AKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQG---TDTYQAWIDDCCDIGENLWEES 711
+ W + ++ Y S + + +E ++ DT I D S
Sbjct: 301 EQMWA-EAMEIYRSGRFKLAFSPAMQRYLKEHQRDFMPEDTKAGMIQAYLDKYTGSMVCS 359
Query: 712 HSLAK 716
L K
Sbjct: 360 KQLYK 364
>gi|123222767|ref|XP_001285517.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121849261|gb|EAX72587.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 211
Score = 42.4 bits (98), Expect = 0.34, Method: Composition-based stats.
Identities = 37/209 (17%), Positives = 65/209 (31%), Gaps = 19/209 (9%)
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGN 595
M N GK N S+ + +++ +E D +N+ +K + Y +
Sbjct: 1 MTNLENICGKFNSSIENMK---LIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKD 57
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
+ + N D RRY+V+ +D + L T
Sbjct: 58 QRVCENVANFIMVSNNAVPMKLESSD---RRYVVVR-TSEAHMQDTEYFDDLAETLTPNF 113
Query: 656 KKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
+ IP + E + Y+ +ID+ + SL
Sbjct: 114 YNHLFSYFMTLDISKFNPRQIPHTEERQTLLEANKS-VYELFIDETNFECLDER----SL 168
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLK 743
SY +Y ++ Y S RT N+K
Sbjct: 169 YDSYKQYCQE---YGYMAASKRTFLANVK 194
>gi|123154829|ref|XP_001278101.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121824021|gb|EAX65171.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 211
Score = 42.4 bits (98), Expect = 0.34, Method: Composition-based stats.
Identities = 37/209 (17%), Positives = 67/209 (32%), Gaps = 19/209 (9%)
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGN 595
M N GK N S+ + +++ +E D +N+ +K + Y +
Sbjct: 1 MTNLENICGKFNSSIENMK---LIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKD 57
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
+ + N D RRY+V+ +D + L T +
Sbjct: 58 QRVCENVANFIMVSNNVVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDF 113
Query: 656 KKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
+ IP + E + Y+ +ID+ + + SL
Sbjct: 114 YNHLFSYFMTLDISKFNPRQIPHTEERQTLLEANKS-VYELFIDETDFVSLDER----SL 168
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLK 743
SY +Y ++ Y S RT N+K
Sbjct: 169 YDSYKQYCQE---YGYMAASKRTFLANVK 194
>gi|237643631|ref|YP_002884321.1| DNA helicase [Bombyx mandarina nucleopolyhedrovirus]
gi|229358177|gb|ACQ57272.1| DNA helicase [Bombyx mandarina nucleopolyhedrovirus]
Length = 1222
Score = 42.4 bits (98), Expect = 0.35, Method: Composition-based stats.
Identities = 24/154 (15%), Positives = 60/154 (38%), Gaps = 9/154 (5%)
Query: 485 YFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544
+ + ++ I++ G GSGKS+ L+ Y++ D +
Sbjct: 895 MLMHFAASLAIPVDYGKKAIYMPGEPGSGKSSFFELL------DYLVLMHKFDDDNHSGE 948
Query: 545 EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604
+ + + + S++ +I+E + + + K+ ++ + A++
Sbjct: 949 SNKETSDKEVSKLNSQLYVINELKQ---CSESYFKKHADSSKSDSKSRKYQGLLKYEANY 1005
Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN 638
IV NK L+V + DD R++++ + +
Sbjct: 1006 KMLIVNNKPLYVDDYDDGVQDRFLIVYTNHKFVD 1039
>gi|166033495|ref|ZP_02236324.1| hypothetical protein DORFOR_03221 [Dorea formicigenerans ATCC
27755]
gi|226325443|ref|ZP_03800961.1| hypothetical protein COPCOM_03248 [Coprococcus comes ATCC 27758]
gi|293115433|ref|ZP_06604508.1| putative virulence-associated protein E [Butyrivibrio crossotus DSM
2876]
gi|166026680|gb|EDR45437.1| hypothetical protein DORFOR_03221 [Dorea formicigenerans ATCC
27755]
gi|225206186|gb|EEG88540.1| hypothetical protein COPCOM_03248 [Coprococcus comes ATCC 27758]
gi|292810002|gb|EFF69207.1| putative virulence-associated protein E [Butyrivibrio crossotus DSM
2876]
Length = 442
Score = 42.4 bits (98), Expect = 0.35, Method: Composition-based stats.
Identities = 45/263 (17%), Positives = 78/263 (29%), Gaps = 36/263 (13%)
Query: 470 LDLVSGYFESEEVMDYFTRCVGMALLG--------GNKAQRFIHIRGVGGSGKSTLMNLI 521
+ +F +V DY + + LLG G+K + + + G G+GKST L+
Sbjct: 122 IRFCLRHFLGADVDDYTYEALKLFLLGAITRAFKPGSKFEIMLCLVGGQGAGKSTFFRLL 181
Query: 522 KYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM 581
+ +L G I+ +SE + A K +
Sbjct: 182 A----------VRDEWFSDDLRKLDDD--NVYRKLQGHWIIEMSEM-----MATANAKSI 224
Query: 582 TGGDCMTARLN--YGNTYSESP---ASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI 636
+R Y Y P F + L D + RR+ IP
Sbjct: 225 EEIKSFLSRQKEVYKIPYETHPADRPRQCVFGGTSNALDFLPLDRSGNRRF--IPVMVYP 282
Query: 637 ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQG---TDTY 693
+ + ++ W + ++ Y S + + +E ++ DT
Sbjct: 283 EQAEVHILEDEAASRAYISQMWA-EAMEIYRSGRYKLSFSPAMQRYLKEHQRDFMPEDTK 341
Query: 694 QAWIDDCCDIGENLWEESHSLAK 716
I D S L K
Sbjct: 342 AGMIQAYLDKYTGETVCSKQLYK 364
>gi|9630898|ref|NP_047495.1| DNA Helicase [Bombyx mori NPV]
gi|3745917|gb|AAC63764.1| DNA Helicase [Bombyx mori NPV]
Length = 1222
Score = 42.4 bits (98), Expect = 0.35, Method: Composition-based stats.
Identities = 24/154 (15%), Positives = 60/154 (38%), Gaps = 9/154 (5%)
Query: 485 YFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544
+ + ++ I++ G GSGKS+ L+ Y++ D +
Sbjct: 895 MLMHFAASLAIPVDYGKKAIYMPGEPGSGKSSFFELL------DYLVLMHKFDDDNHSGE 948
Query: 545 EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604
+ + + + S++ +I+E + + + K+ ++ + A++
Sbjct: 949 SNKETSDKEVSKLNSQLYVINELKQ---CSESYFKKHADSSKSDSKSRKYQGLLKYEANY 1005
Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN 638
IV NK L+V + DD R++++ + +
Sbjct: 1006 KMLIVNNKPLYVDDYDDGVQDRFLIVYTNHKFVD 1039
>gi|255092533|ref|ZP_05322011.1| virulence-associated E domain protein [Clostridium difficile CIP
107932]
gi|260683193|ref|YP_003214478.1| putative virulence-associated protein e [Clostridium difficile
CD196]
gi|260209356|emb|CBA62786.1| putative virulence-associated protein e [Clostridium difficile
CD196]
Length = 805
Score = 42.0 bits (97), Expect = 0.35, Method: Composition-based stats.
Identities = 63/437 (14%), Positives = 126/437 (28%), Gaps = 79/437 (18%)
Query: 283 KRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHF-LYTADTKAWYKKDKNNV 341
+ S F S K I + L + D + F D K YKK NN+
Sbjct: 338 RMSEFASSDTKVRKTIGRENL-DKAKDDFGDIDFED--DEWLTRLDYDNKGSYKKTTNNI 394
Query: 342 YIWSLTLDKITASIM-NFLVSMKEDVFDLSEEPED-----NNKNSKSPRFWFNTDYRRQN 395
++ + I N + + L +D N+ + R T Y +
Sbjct: 395 LMFIENDPYLKGKIAYNEFSNRAVVLGKLPWRKDDKLNDWNDSDDSGLRHHIETIYNISS 454
Query: 396 VEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKS 455
+ + + + ++ + Y+
Sbjct: 455 PSKVN------------------------DALIIAFENNTF---------HPIKDYL--- 478
Query: 456 TGTPFVEGEPSQEFLDLVSGYFESEE-------VMDYFTRCVGMALLGGNKAQRFIHIRG 508
++ + + L+ Y +E+ + V G K + + G
Sbjct: 479 ---NSLKWDGIKRVDTLLIDYLGAEDNHYTRTIIRKVLVAAVARVFNPGIKFDNMMVLSG 535
Query: 509 VGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN 568
G GKST IK G+ Y + + + +L G ++ + E
Sbjct: 536 PQGMGKSTF---IKKLGGDWYSDSLTTV-----------QGKEAYEQLQGVWLLEMGEMM 581
Query: 569 ENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYI 628
+ + +K R+ YG S N F+R+ RR+
Sbjct: 582 ATKKADIEAVKHFLSKSEDIYRVAYGKRTSRFLRQCVVIGTTNDKEFLRDKTGN--RRFW 639
Query: 629 VIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEER- 687
I D + + S + ++ KA ++ L + E +A+ ++R
Sbjct: 640 PI--DTGVKKVNKSIFNGQLDNERNQIWAEAVELCKA--NEQLYLSDEEK-KEAERQQRT 694
Query: 688 -QGTDTYQAWIDDCCDI 703
+ I++ +
Sbjct: 695 HSEENAKSGIIEEYLNK 711
>gi|154502941|ref|ZP_02040001.1| hypothetical protein RUMGNA_00762 [Ruminococcus gnavus ATCC 29149]
gi|260588277|ref|ZP_05854190.1| putative virulence-associated protein E [Blautia hansenii DSM
20583]
gi|153796480|gb|EDN78900.1| hypothetical protein RUMGNA_00762 [Ruminococcus gnavus ATCC 29149]
gi|260541415|gb|EEX21984.1| putative virulence-associated protein E [Blautia hansenii DSM
20583]
Length = 442
Score = 42.0 bits (97), Expect = 0.35, Method: Composition-based stats.
Identities = 40/245 (16%), Positives = 69/245 (28%), Gaps = 28/245 (11%)
Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539
E + + + A G K + + + G G+GKST L+
Sbjct: 140 EALKLFLLGAISRAFQPGCKFEIMLCLVGGQGAGKSTFFRLLA----------VRDEWFS 189
Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLN--YGNTY 597
+ +L G I+ +SE + A K + +R Y Y
Sbjct: 190 DDLRKLDDD--NVYRKLQGHWIIEMSEM-----MATANAKSIEEIKSFLSRQKEVYKIPY 242
Query: 598 SESP---ASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLE 654
P F + L D + RR+ IP + +
Sbjct: 243 ETHPADRPRQCVFGGTSNALDFLPLDRSGNRRF--IPVMVYPEQAEVHILEDEAASRAYI 300
Query: 655 AKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQG---TDTYQAWIDDCCDIGENLWEES 711
+ W + ++ Y S + + +E ++ DT I D S
Sbjct: 301 EQMWA-EAMEIYRSGRFKLAFSPAMQRYLKEHQRDFMPEDTKAGMIQAYLDKYTGSMVCS 359
Query: 712 HSLAK 716
L K
Sbjct: 360 KQLYK 364
>gi|123390781|ref|XP_001299948.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121880900|gb|EAX87018.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 194
Score = 42.0 bits (97), Expect = 0.35, Method: Composition-based stats.
Identities = 31/188 (16%), Positives = 60/188 (31%), Gaps = 16/188 (8%)
Query: 560 RIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV 616
++++ +E D +N+ +K + Y + + + N
Sbjct: 2 KLIVCNELQSIDTTKVLNSNALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMK 61
Query: 617 RNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-I 675
D RRY+V+ +D + L T + + I
Sbjct: 62 LESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQI 117
Query: 676 PEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIST 735
P + E + Y+ +ID+ + + SL SY +Y ++ Y S
Sbjct: 118 PHTEERQTLLEANKS-VYELFIDETDFVSLDER----SLYDSYKQYCQE---YGYMTASK 169
Query: 736 RTVTLNLK 743
RT N+K
Sbjct: 170 RTFLANVK 177
>gi|123268667|ref|XP_001289652.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121860998|gb|EAX76722.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 194
Score = 42.0 bits (97), Expect = 0.35, Method: Composition-based stats.
Identities = 31/188 (16%), Positives = 60/188 (31%), Gaps = 16/188 (8%)
Query: 560 RIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV 616
++++ +E D +N+ +K + Y + + + N
Sbjct: 2 KLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMK 61
Query: 617 RNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-I 675
D RRY+V+ +D + L T + + I
Sbjct: 62 LESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQI 117
Query: 676 PEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIST 735
P + E + Y+ +ID+ + + SL SY +Y ++ Y S
Sbjct: 118 PHTEERQTLLEANKS-VYELFIDETDFVSLDER----SLYDSYKQYCQE---YGYMTASK 169
Query: 736 RTVTLNLK 743
RT N+K
Sbjct: 170 RTFLANVK 177
>gi|123194435|ref|XP_001283062.1| hypothetical protein [Trichomonas vaginalis G3]
gi|123244923|ref|XP_001288680.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121841695|gb|EAX70132.1| conserved hypothetical protein [Trichomonas vaginalis G3]
gi|121858328|gb|EAX75750.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 194
Score = 42.0 bits (97), Expect = 0.35, Method: Composition-based stats.
Identities = 31/188 (16%), Positives = 60/188 (31%), Gaps = 16/188 (8%)
Query: 560 RIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV 616
++++ +E D +N+ +K + Y + + + N
Sbjct: 2 KLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMK 61
Query: 617 RNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-I 675
D RRY+V+ +D + L T + + I
Sbjct: 62 LESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQI 117
Query: 676 PEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIST 735
P + E + Y+ +ID+ + + SL SY +Y ++ Y S
Sbjct: 118 PHTEERQTLLEANKS-VYELFIDETDFVSLDER----SLYDSYKQYCQE---YGYMTASK 169
Query: 736 RTVTLNLK 743
RT N+K
Sbjct: 170 RTFLANVK 177
>gi|254975143|ref|ZP_05271615.1| virulence-associated E domain protein [Clostridium difficile
QCD-66c26]
gi|255314270|ref|ZP_05355853.1| virulence-associated E domain protein [Clostridium difficile
QCD-76w55]
gi|255516950|ref|ZP_05384626.1| virulence-associated E domain protein [Clostridium difficile
QCD-97b34]
gi|255650052|ref|ZP_05396954.1| virulence-associated E domain protein [Clostridium difficile
QCD-37x79]
gi|260686789|ref|YP_003217922.1| putative virulence-associated protein e [Clostridium difficile
R20291]
gi|306519587|ref|ZP_07405934.1| putative virulence-associated protein e; putative
virulence-associated protein e [Clostridium difficile
QCD-32g58]
gi|260212805|emb|CBE03973.1| putative virulence-associated protein e [Clostridium difficile
R20291]
Length = 805
Score = 42.0 bits (97), Expect = 0.35, Method: Composition-based stats.
Identities = 63/437 (14%), Positives = 126/437 (28%), Gaps = 79/437 (18%)
Query: 283 KRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHF-LYTADTKAWYKKDKNNV 341
+ S F S K I + L + D + F D K YKK NN+
Sbjct: 338 RMSEFASSDTKVRKTIGRENL-DKAKDDFGDIDFED--DEWLTRLDYDNKGSYKKTTNNI 394
Query: 342 YIWSLTLDKITASIM-NFLVSMKEDVFDLSEEPED-----NNKNSKSPRFWFNTDYRRQN 395
++ + I N + + L +D N+ + R T Y +
Sbjct: 395 LMFIENDPYLKGKIAYNEFSNRAVVLGKLPWRKDDKLNDWNDSDDSGLRHHIETIYNISS 454
Query: 396 VEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKS 455
+ + + + ++ + Y+
Sbjct: 455 PSKVN------------------------DALIIAFENNTF---------HPIKDYL--- 478
Query: 456 TGTPFVEGEPSQEFLDLVSGYFESEE-------VMDYFTRCVGMALLGGNKAQRFIHIRG 508
++ + + L+ Y +E+ + V G K + + G
Sbjct: 479 ---NSLKWDGIKRVDTLLIDYLGAEDNHYTRTIIRKVLVAAVARVFNPGIKFDNMMVLSG 535
Query: 509 VGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN 568
G GKST IK G+ Y + + + +L G ++ + E
Sbjct: 536 PQGMGKSTF---IKKLGGDWYSDSLTTV-----------QGKEAYEQLQGVWLLEMGEMM 581
Query: 569 ENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYI 628
+ + +K R+ YG S N F+R+ RR+
Sbjct: 582 ATKKADIEAVKHFLSKSEDIYRVAYGKRTSRFLRQCVVIGTTNDKEFLRDKTGN--RRFW 639
Query: 629 VIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEER- 687
I D + + S + ++ KA ++ L + E +A+ ++R
Sbjct: 640 PI--DTGVKKVNKSIFNGQLDNERNQIWAEAVELCKA--NEQLYLSDEEK-KEAERQQRT 694
Query: 688 -QGTDTYQAWIDDCCDI 703
+ I++ +
Sbjct: 695 HSEENAKSGIIEEYLNK 711
>gi|323693687|ref|ZP_08107886.1| virulence-associated E [Clostridium symbiosum WAL-14673]
gi|323502301|gb|EGB18164.1| virulence-associated E [Clostridium symbiosum WAL-14673]
Length = 445
Score = 42.0 bits (97), Expect = 0.36, Method: Composition-based stats.
Identities = 40/245 (16%), Positives = 69/245 (28%), Gaps = 28/245 (11%)
Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539
E + + + A G K + + + G G+GKST L+
Sbjct: 143 EALKLFLLGAISRAFQPGCKFEIMLCLVGGQGAGKSTFFRLLA----------VRDEWFS 192
Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLN--YGNTY 597
+ +L G I+ +SE + A K + +R Y Y
Sbjct: 193 DDLRKLDDD--NVYRKLQGHWIIEMSEM-----MATANAKSIEEIKSFLSRQKEVYKIPY 245
Query: 598 SESP---ASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLE 654
P F + L D + RR+ IP + +
Sbjct: 246 ETHPADRPRQCVFGGTSNALDFLPLDRSGNRRF--IPVMVYPEQAEVHILEDEAASRAYI 303
Query: 655 AKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQG---TDTYQAWIDDCCDIGENLWEES 711
+ W + ++ Y S + + +E ++ DT I D S
Sbjct: 304 EQMWA-EAMEIYRSGRFKLAFSPAMQRYLKEHQRDFMPEDTKAGMIQAYLDKYTGSMVCS 362
Query: 712 HSLAK 716
L K
Sbjct: 363 KQLYK 367
>gi|160942809|ref|ZP_02090049.1| hypothetical protein FAEPRAM212_00286 [Faecalibacterium prausnitzii
M21/2]
gi|158445861|gb|EDP22864.1| hypothetical protein FAEPRAM212_00286 [Faecalibacterium prausnitzii
M21/2]
Length = 442
Score = 42.0 bits (97), Expect = 0.36, Method: Composition-based stats.
Identities = 40/245 (16%), Positives = 69/245 (28%), Gaps = 28/245 (11%)
Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539
E + + + A G K + + + G G+GKST L+
Sbjct: 140 EALKLFLLGAISRAFQPGCKFEIMLCLVGGQGAGKSTFFRLLA----------VRDEWFS 189
Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLN--YGNTY 597
+ +L G I+ +SE + A K + +R Y Y
Sbjct: 190 DDLRKLDDD--NVYRKLQGHWIIEMSEM-----MATANAKSIEEIKSFLSRQKEVYKIPY 242
Query: 598 SESP---ASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLE 654
P F + L D + RR+ IP + +
Sbjct: 243 ETHPADRPRQCVFGGTSNALDFLPLDRSGNRRF--IPVMVYPEQAEVHILEDEAASRAYI 300
Query: 655 AKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQG---TDTYQAWIDDCCDIGENLWEES 711
+ W + ++ Y S + + +E ++ DT I D S
Sbjct: 301 EQMWA-EAMEIYRSGRFKLAFSPAMQRYLKEHQRDFMPEDTKAGMIQAYLDKYTGSMVCS 359
Query: 712 HSLAK 716
L K
Sbjct: 360 KQLYK 364
>gi|146162295|ref|XP_001009196.2| 26S proteasome subunit P45 family protein [Tetrahymena thermophila]
gi|146146457|gb|EAR88951.2| 26S proteasome subunit P45 family protein [Tetrahymena thermophila
SB210]
Length = 395
Score = 42.0 bits (97), Expect = 0.36, Method: Composition-based stats.
Identities = 35/169 (20%), Positives = 58/169 (34%), Gaps = 21/169 (12%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL---IRLMGSR 560
+ + G G+GK+ L I + + I S+++Q E + L R
Sbjct: 175 VLLYGPPGTGKTLLARAIAH-HTDCTFIRVSGSELVQKYIGEGARMVRELFVMARQHAPC 233
Query: 561 IVIISETNENDEINAAKIKQMTGGDC----MTARLNYGNTYSESPASFTPFIVPNKHLFV 616
++ I E D I A+I GGD L ES + + N +
Sbjct: 234 LIFIDEV---DSIGGARIDSDRGGDSEVQRTMLELLNQLDGFESTNNIKIIMATN---RI 287
Query: 617 RNPDDAWWR--RYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGV 663
D A R R D+ + + S +LE K ++G+
Sbjct: 288 DILDPALLRPGRI-----DRKVEFPNPSVEARLEILSIHSKKMNLMRGI 331
>gi|148238082|ref|NP_001081635.1| 26S protease regulatory subunit 8 [Xenopus laevis]
gi|3041724|sp|P46470|PRS8_XENLA RecName: Full=26S protease regulatory subunit 8; AltName: Full=26S
proteasome AAA-ATPase subunit RPT6; AltName:
Full=Proteasome 26S subunit ATPase 5; AltName: Full=SUG1
homolog; Short=xSUG1
gi|1877414|emb|CAA57512.1| XSUG1 [Xenopus laevis]
Length = 461
Score = 42.0 bits (97), Expect = 0.37, Method: Composition-based stats.
Identities = 28/152 (18%), Positives = 49/152 (32%), Gaps = 22/152 (14%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL---IRLMGSR 560
+ + G G+GK+ L + + + I S+++Q E + L R
Sbjct: 181 VLLYGPPGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPS 239
Query: 561 IVIISETNE-NDEINAAKIKQMTGGDC----MTARLNYGNTYSESPASFTPFIVPNKHLF 615
I+ + E + + +GGD L E+ + + N
Sbjct: 240 IIFMDEIDSIGSRLEGG-----SGGDSEVQRTMLELLNQLDGFEATKNIKVIMATN---R 291
Query: 616 VRNPDDAWWR--RY-IVIPFDKPIANRDASFA 644
+ D A R R I F P N +A
Sbjct: 292 IDILDSALLRPGRIDRKIEF--PPPNEEARLD 321
>gi|172054864|ref|YP_001806191.1| hypothetical protein cce_4777 [Cyanothece sp. ATCC 51142]
gi|171701145|gb|ACB54125.1| hypothetical protein cce_4777 [Cyanothece sp. ATCC 51142]
Length = 339
Score = 42.0 bits (97), Expect = 0.37, Method: Composition-based stats.
Identities = 13/113 (11%), Positives = 32/113 (28%), Gaps = 14/113 (12%)
Query: 679 CLKAKEEERQGTDTYQAWIDDCCDIGENLW---------EESHSLAK-----SYSEYREQ 724
++ + AW+++ + ES + + Y Y
Sbjct: 4 VDITTDKSMVENNPIAAWLNENIIYDPQSYTHVGKAIKSTESDEVYRGASKWLYPNYCAF 63
Query: 725 ELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFES 777
IS + L + ++ ++ I+GLK++ +
Sbjct: 64 CEGIKVNPISLNRFSTLLLDLCNHQLNLNDVVKDRNRNGVFIQGLKIRDHLDD 116
>gi|123455067|ref|XP_001315281.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121897953|gb|EAY03058.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 207
Score = 42.0 bits (97), Expect = 0.37, Method: Composition-based stats.
Identities = 37/209 (17%), Positives = 67/209 (32%), Gaps = 19/209 (9%)
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGN 595
M N GK N S+ + +++ +E D +N+ +K + Y +
Sbjct: 1 MTNLENICGKFNSSIENMK---LIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKD 57
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
+ + N D RRY+V+ +D + L T +
Sbjct: 58 QRVCENVANFIMVSNNAVPMKLESSD---RRYVVVR-TSEAHMQDTEYFDDLAETLTSDF 113
Query: 656 KKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
+ IP + E + Y+ +ID+ + + SL
Sbjct: 114 YNHLFSYFMTLDISKFNPRQIPHTEERQTLLEANKS-VYELFIDET----DFECLDERSL 168
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLK 743
SY +Y ++ Y S RT N+K
Sbjct: 169 YDSYKQYCQE---YGYMTASKRTFLANVK 194
>gi|123320987|ref|XP_001293288.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121869933|gb|EAX80358.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 211
Score = 42.0 bits (97), Expect = 0.37, Method: Composition-based stats.
Identities = 35/209 (16%), Positives = 66/209 (31%), Gaps = 19/209 (9%)
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGN 595
M N GK N S+ + +++ +E D +N+ +K + Y +
Sbjct: 1 MTNLENICGKFNSSIENMK---LIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKD 57
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
+ + N D RRY+V+ +D + L T +
Sbjct: 58 QRVCENVANFIMVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDF 113
Query: 656 KKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
+ IP + E + Y+ +I++ + + SL
Sbjct: 114 YNHLFSYFMTLDISKFNPRQIPHTEERQTLLEANKS-VYELFIEETDFVSLDEK----SL 168
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLK 743
Y +Y ++ Y S RT N+K
Sbjct: 169 YDEYKQYCQE---YGYMAASKRTFLANVK 194
>gi|123156424|ref|XP_001278436.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121825281|gb|EAX65506.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 211
Score = 42.0 bits (97), Expect = 0.37, Method: Composition-based stats.
Identities = 37/209 (17%), Positives = 67/209 (32%), Gaps = 19/209 (9%)
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGN 595
M N GK N S+ + +++ +E D +N+ +K + Y +
Sbjct: 1 MTNLENICGKFNSSIENMK---LIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKD 57
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
+ + N D RRY+V+ +D + L T +
Sbjct: 58 QRVCENVANFIMVSNNAVPMKLESSD---RRYVVVR-TSEAHMQDTEYFDDLAETLTSDF 113
Query: 656 KKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
+ IP + E + Y+ +ID+ + + SL
Sbjct: 114 YNHLFSYFMTLDISKFNPRQIPHTEERQTLLEANKS-VYELFIDET----DFECLDERSL 168
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLK 743
SY +Y ++ Y S RT N+K
Sbjct: 169 YDSYKQYCQE---YGYMTASKRTFLANVK 194
>gi|9632451|ref|NP_049423.1| hypothetical protein DT1p34 [Streptococcus phage DT1]
gi|4530171|gb|AAD21911.1| unknown [Streptococcus phage DT1]
Length = 271
Score = 42.0 bits (97), Expect = 0.37, Method: Composition-based stats.
Identities = 24/174 (13%), Positives = 54/174 (31%), Gaps = 7/174 (4%)
Query: 4 MQWKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQ 63
M+ + A G+ +IP+ K P + ++ ++ I ++ +
Sbjct: 1 MKMVDYAINYQRMGYSVIPISKNGKTPL-ISFADKPPMTENDIRRVWRDNPDANIALKTD 59
Query: 64 PLYAFDIDSK-DEKTANTFKDTFE-ILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTES 121
+ D+D D ++ L + I P + K+
Sbjct: 60 TFFVIDVDMHGDVDGLTNLRNWEHARLIPKTLQAI--TPSGGRHIYLKKDPNHPISQNIG 117
Query: 122 TQGHLDILGCGQYFVAYNIHPKTKKEYTWTT--PPHRFKVEDTPLLSEEDVEYL 173
+DI ++ +K Y W T P + + PL + ++ +
Sbjct: 118 MIEGVDIKAHVNNYILVPPSNNSKGYYEWDTVHSPKDGSITEAPLALIKVLQKM 171
>gi|123318166|ref|XP_001292865.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121868943|gb|EAX79935.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 211
Score = 42.0 bits (97), Expect = 0.38, Method: Composition-based stats.
Identities = 35/209 (16%), Positives = 66/209 (31%), Gaps = 19/209 (9%)
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGN 595
M N GK N S+ + +++ +E D +N+ +K + Y +
Sbjct: 1 MTNLENICGKFNSSIENMK---LIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKD 57
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
+ + N D RRY+V+ +D + L T +
Sbjct: 58 QRVCENVANFIMVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDF 113
Query: 656 KKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
+ IP + E + Y+ +I++ + + SL
Sbjct: 114 YNHLFSYFMTLDISKFNPRQIPHTEERQTLLEANKS-VYELFIEESDFVSLDER----SL 168
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLK 743
Y +Y ++ Y S RT N+K
Sbjct: 169 YDEYKQYCQE---YGYIAASKRTFLANVK 194
>gi|123234264|ref|XP_001286530.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121852200|gb|EAX73600.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 194
Score = 42.0 bits (97), Expect = 0.38, Method: Composition-based stats.
Identities = 31/189 (16%), Positives = 59/189 (31%), Gaps = 16/189 (8%)
Query: 560 RIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV 616
++++ +E D +N+ +K + Y + + + N
Sbjct: 2 KLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMK 61
Query: 617 RNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-I 675
D RRY+V+ +D + L T + I
Sbjct: 62 LESSD---RRYVVVR-TSEAHMQDTEYFDDLAETLTPNFYNHLFSYFMTLDISKFNPRQI 117
Query: 676 PEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIST 735
P + E + Y+ +ID+ + + SL SY +Y ++ Y S
Sbjct: 118 PHTEERQTLLEANKS-VYELFIDET----DFECLDERSLYDSYKQYCQE---YGYMTASK 169
Query: 736 RTVTLNLKQ 744
RT N+K
Sbjct: 170 RTFLANVKN 178
>gi|123187796|ref|XP_001281697.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121837036|gb|EAX68767.1| hypothetical protein TVAG_510970 [Trichomonas vaginalis G3]
Length = 194
Score = 42.0 bits (97), Expect = 0.38, Method: Composition-based stats.
Identities = 31/188 (16%), Positives = 60/188 (31%), Gaps = 16/188 (8%)
Query: 560 RIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV 616
++++ +E D +N+ +K + Y + + + N
Sbjct: 2 KLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNVVPMK 61
Query: 617 RNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-I 675
D RRY+V+ +D + L T + + I
Sbjct: 62 LESSD---RRYVVVR-TSEAHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQI 117
Query: 676 PEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIST 735
P + E + Y+ +ID+ + + SL SY +Y ++ Y S
Sbjct: 118 PHTEERQTLLEANKS-VYELFIDETDFVSLDER----SLYDSYKQYCQE---YGYMTASK 169
Query: 736 RTVTLNLK 743
RT N+K
Sbjct: 170 RTFLANVK 177
>gi|123178038|ref|XP_001280154.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121831544|gb|EAX67224.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 211
Score = 42.0 bits (97), Expect = 0.38, Method: Composition-based stats.
Identities = 37/210 (17%), Positives = 67/210 (31%), Gaps = 19/210 (9%)
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGN 595
M N GK N S+ + +++ +E D +N+ +K + Y +
Sbjct: 1 MTNLENICGKFNSSIENMK---LIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKD 57
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
+ + N D RRY+V+ +D + L T +
Sbjct: 58 QRVCENVANFIMVSNNAVPMKLESSD---RRYVVVR-TSESHMQDTEYFDDLAETLTSDF 113
Query: 656 KKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
+ IP + E + Y+ +ID+ + + SL
Sbjct: 114 YNHLFSYFMTLDISKFNPRQIPHTEERQTLLEANKS-VYELFIDET----DFECLDERSL 168
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLKQ 744
SY +Y ++ Y S RT N+K
Sbjct: 169 YDSYKQYCQE---YGYMTASKRTFLANVKN 195
>gi|260906035|ref|ZP_05914357.1| hypothetical protein BlinB_11946 [Brevibacterium linens BL2]
Length = 199
Score = 42.0 bits (97), Expect = 0.38, Method: Composition-based stats.
Identities = 19/89 (21%), Positives = 34/89 (38%), Gaps = 2/89 (2%)
Query: 487 TRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEA 546
R AL G +A + + G G+GK+T + A G I + + R +
Sbjct: 11 MRTFAEALAGHLRAGDLLILSGNLGAGKTTFTQSLGRALGVTGRITSP--TFVIAREHPS 68
Query: 547 GKANPSLIRLMGSRIVIISETNENDEINA 575
P+L+ + R+ E + D +
Sbjct: 69 SGDGPALVHVDAYRLSDAEELGDLDLDSE 97
>gi|9631064|ref|NP_047734.1| helicase [Lymantria dispar MNPV]
gi|3822332|gb|AAC70283.1| helicase [Lymantria dispar MNPV]
Length = 1218
Score = 42.0 bits (97), Expect = 0.38, Method: Composition-based stats.
Identities = 40/216 (18%), Positives = 73/216 (33%), Gaps = 36/216 (16%)
Query: 494 LLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL 553
+ G+ + +I G +GKS+ L++ F + S + + + +AN +
Sbjct: 912 AIPGDYEKLANYIIGEANAGKSSNNELMENIF--VVHKHDADSYTLSKKETDEMEANKLI 969
Query: 554 IRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTA-RLNYGNTYSESPASFTPFIVPNK 612
+L +I+E E + + K A Y ++ A++ IV NK
Sbjct: 970 SQLY-----VINEMKE---CSDSFFKNSADSTKSNAVCRKYQSSQKYE-ANYKLQIVNNK 1020
Query: 613 HLFVRNPDDAWWRRYIVI----------PFDKPIANRDASFAQKLETKYTLEA---KKWF 659
LF+ D A R+ ++ PF + + + LE Y + F
Sbjct: 1021 PLFIVGYDKAVRNRFAIVYIDHVYEENLPFSGSVYSHIKNKRYPLEKGYYEGLVTPVRLF 1080
Query: 660 LKGVKAYISKGLDVDIPEVCLKAKEEERQ--GTDTY 693
L + Y D +P R D
Sbjct: 1081 LAHILMYRRNPKDGYVP---------YRALVKNDPI 1107
>gi|229821005|ref|YP_002882531.1| Bifunctional DNA primase/polymerase [Beutenbergia cavernae DSM
12333]
gi|229566918|gb|ACQ80769.1| Bifunctional DNA primase/polymerase [Beutenbergia cavernae DSM
12333]
Length = 206
Score = 42.0 bits (97), Expect = 0.39, Method: Composition-based stats.
Identities = 22/118 (18%), Positives = 36/118 (30%), Gaps = 9/118 (7%)
Query: 38 EQLLSSEKIDKLPAC----GFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPI 93
+ L E I++ G G + DID + A + K
Sbjct: 90 DPLTYVEAIERAVGRTTVLNVGLATGRASGF-WVLDID-PAKGGAASIKALEAEHGALAP 147
Query: 94 VRIGQKPKILIP--FRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYT 149
R + + M +G + + +D+ G G Y VA TK Y+
Sbjct: 148 TRRVRTGSGGWHLYYAMPLDGSDVRNSQGLVAPGIDVRGTGGYVVAPP-SVSTKGAYS 204
>gi|163816298|ref|ZP_02207665.1| hypothetical protein COPEUT_02486 [Coprococcus eutactus ATCC 27759]
gi|158448493|gb|EDP25488.1| hypothetical protein COPEUT_02486 [Coprococcus eutactus ATCC 27759]
Length = 407
Score = 42.0 bits (97), Expect = 0.39, Method: Composition-based stats.
Identities = 44/256 (17%), Positives = 80/256 (31%), Gaps = 36/256 (14%)
Query: 477 FESEEVMDYFTRCVGMALLG--------GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528
F EV +Y + + ++G G K + + + G G+GKST + +
Sbjct: 96 FLGAEVSEYTYEVMKLFMIGTIARISCPGIKFEVMLCLVGGQGAGKSTFLRFLA------ 149
Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588
E + ++ G I+ E + K +
Sbjct: 150 ----MEDDWFTDDLKKMDDD--NVYRKIQGHLIIEFPEM-----VAILNAKNVEDTKSFM 198
Query: 589 ARLN--YGNTYSESPASFT---PFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASF 643
+R Y Y P F + L D + RR++ I + A
Sbjct: 199 SRQKDTYKTPYDRHPKDHKRQCVFAGSSNSLDFLPMDRSGNRRFLPILCNMEEAETHILD 258
Query: 644 AQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQ---GTDTYQAWIDDC 700
+K +Y + W + ++ Y S + +P+ K E ++ DT + I D
Sbjct: 259 DEKTSREYIDQM--WA-EAMEIYRSGKCQLRLPKEMEKELCEYQKQFMQEDTKKELILDY 315
Query: 701 CDIGENLWEESHSLAK 716
+ E S L
Sbjct: 316 LEHYEGSMVCSRQLYS 331
>gi|123206430|ref|XP_001284926.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121847406|gb|EAX71996.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 211
Score = 42.0 bits (97), Expect = 0.39, Method: Composition-based stats.
Identities = 37/210 (17%), Positives = 66/210 (31%), Gaps = 19/210 (9%)
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGN 595
M N GK N S+ + +++ +E D +N+ +K + Y +
Sbjct: 1 MTNLENICGKFNSSIENMK---LIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYRD 57
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
+ + N D RRY+V+ +D + L T +
Sbjct: 58 QRVCENVANFIMVSNNAVPMKLESSD---RRYVVVR-TSEAHMQDTEYFDDLAETLTSDF 113
Query: 656 KKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
+ IP + E + Y+ +ID+ + SL
Sbjct: 114 YNHLFSYFMTLDISKFNPRQIPHTEERQTLLEANKS-VYELFIDETNFECLDER----SL 168
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLKQ 744
SY +Y ++ Y S RT N+K
Sbjct: 169 YDSYKQYCQE---YGYMAASKRTFLANVKN 195
>gi|134097719|ref|YP_001103380.1| hypothetical protein SACE_1124 [Saccharopolyspora erythraea NRRL
2338]
gi|291006321|ref|ZP_06564294.1| hypothetical protein SeryN2_17535 [Saccharopolyspora erythraea NRRL
2338]
gi|133910342|emb|CAM00455.1| hypothetical protein SACE_1124 [Saccharopolyspora erythraea NRRL
2338]
Length = 314
Score = 42.0 bits (97), Expect = 0.39, Method: Composition-based stats.
Identities = 30/203 (14%), Positives = 50/203 (24%), Gaps = 46/203 (22%)
Query: 17 GFKLIPLRLGDKRPQRLG---------------KWEEQLLSSEKIDK--LPACGFGFVCG 59
G+ + PL+ G P G KWE++ K + +
Sbjct: 18 GWPVFPLKPGGSFPALHGVDDCPRTGVCADGHLKWEQRATIYAKRIRACWTHDAYNIGLA 77
Query: 60 VGEQPLYAFDIDSKDEKT------ANTFKDTFEILHGTPIVRIGQKP------------- 100
G L D D A ++ + GQ P
Sbjct: 78 TGPAGLLVVDFDVPKPGKPVPDRWAAQGVESGMDVFLLLCAEAGQAPPLETFTVATPSGG 137
Query: 101 KILIPFRMNKEGIKKKKTTEST-QGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPH---- 155
L G++ + + +D G G Y VA + P
Sbjct: 138 THLYFTVPADAGLRITQGERNGLGWGIDTRGHGGYVVAPGSIRRDGTYTITHDRPLMPLP 197
Query: 156 -----RFKVEDTPLLSEEDVEYL 173
R + ++ P V +
Sbjct: 198 GWLIERLRPQELPPQQPTPVATI 220
>gi|9634995|ref|NP_056711.1| gp271 [Streptococcus phage Sfi11]
gi|7523555|gb|AAF63058.1|AF158600_12 gp271 [Streptococcus phage Sfi11]
gi|7523585|gb|AAF63087.1|AF158601_15 gp271 [Streptococcus phage SFi18]
Length = 271
Score = 42.0 bits (97), Expect = 0.40, Method: Composition-based stats.
Identities = 24/173 (13%), Positives = 53/173 (30%), Gaps = 5/173 (2%)
Query: 4 MQWKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQ 63
M+ + A G+ +IP+ K P + ++ ++ I ++ +
Sbjct: 1 MEMVDYAINYQRMGYSVIPISKNSKTPL-ISFADKPPMTENDIRRVWRDNPDANIALRTD 59
Query: 64 PLYAFDIDSK-DEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTEST 122
+ D+D D ++ E P P + K+
Sbjct: 60 TFFVIDVDMHGDVDGLTNLRNW-EHARLIPPTLQAITPSGGRHIYLKKDPNHPISQNIGM 118
Query: 123 QGHLDILGCGQYFVAYNIHPKTKKEYTWTT--PPHRFKVEDTPLLSEEDVEYL 173
+DI ++ +K Y W T P + + PL + ++ +
Sbjct: 119 IEGVDIKAHVNNYILVPPSNNSKGYYEWDTVHSPKDGSITEAPLALIKVLQKM 171
>gi|302544509|ref|ZP_07296851.1| putative integral membrane protein [Streptomyces hygroscopicus ATCC
53653]
gi|302462127|gb|EFL25220.1| putative integral membrane protein [Streptomyces himastatinicus
ATCC 53653]
Length = 345
Score = 42.0 bits (97), Expect = 0.40, Method: Composition-based stats.
Identities = 16/90 (17%), Positives = 34/90 (37%), Gaps = 1/90 (1%)
Query: 97 GQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHR 156
G P + +R + + K T +TQ + G + A +HPKT + Y +
Sbjct: 116 GTWPH-VWIYRFPEPKVLKNTTVTATQFTVKYEGGARNAEAMMVHPKTGRVYIASKSDDD 174
Query: 157 FKVEDTPLLSEEDVEYLFKFFQEITVPLVK 186
+ + P +F+ ++ + +
Sbjct: 175 PGLYEAPATLSAQGTNVFRRVADLDMEVTD 204
>gi|326416946|gb|ADZ73316.1| putative E1 [Equine papillomavirus 2]
Length = 627
Score = 42.0 bits (97), Expect = 0.41, Method: Composition-based stats.
Identities = 23/171 (13%), Positives = 57/171 (33%), Gaps = 30/171 (17%)
Query: 494 LLGGNKAQRFIHIRGVGGSGKSTL-MNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS 552
+ G + + + G +GKS+ ++L+++ G K++
Sbjct: 441 FVKGVPKKNCMVLVGPPNTGKSSFAVSLLEFMNGKVL-------------FFPNSKSHFW 487
Query: 553 LIRLMGSRIVIISETNENDEIN--AAKIKQMTGGDCMTARLNYGNTYSES-PASFTPFIV 609
L+ L +R+ ++ + + ++ G+ ++ + P +
Sbjct: 488 LMPLADTRMALLDDAT-GPVWDFFDHYMRNAMDGNPISVDQKHKQPLQLRCPP---LLMT 543
Query: 610 PNKHLFVRNPDDAWW--RRYIVIPFDKPIANRDASFAQKLETKYTLEAKKW 658
N + + W+ R IV+ F P + + + L K W
Sbjct: 544 TN--VDISQESKYWYLHSRMIVLRFPNPFP-----LDENQQPVFELTVKNW 587
>gi|257438053|ref|ZP_05613808.1| virulence-associated E [Faecalibacterium prausnitzii A2-165]
gi|257199713|gb|EEU97997.1| virulence-associated E [Faecalibacterium prausnitzii A2-165]
gi|295108436|emb|CBL22389.1| Predicted P-loop ATPase and inactivated derivatives [Ruminococcus
obeum A2-162]
Length = 445
Score = 42.0 bits (97), Expect = 0.41, Method: Composition-based stats.
Identities = 40/245 (16%), Positives = 69/245 (28%), Gaps = 28/245 (11%)
Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539
E + + + A G K + + + G G+GKST L+
Sbjct: 143 EALKLFLLGAISRAFQPGCKFEIMLCLVGGQGAGKSTFFRLLA----------VRDEWFS 192
Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLN--YGNTY 597
+ +L G I+ +SE + A K + +R Y Y
Sbjct: 193 DDLRKLDDD--NVYRKLQGHWIIEMSEM-----MATANAKSIEEIKSFLSRQKEVYKIPY 245
Query: 598 SESP---ASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLE 654
P F + L D + RR+ IP + +
Sbjct: 246 ETHPADRPRQCVFGGTSNALDFLPLDRSGNRRF--IPVMVYPEQAEVHILEDEAASRAYI 303
Query: 655 AKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQG---TDTYQAWIDDCCDIGENLWEES 711
+ W + ++ Y S + + +E ++ DT I D S
Sbjct: 304 EQMWA-EAMEIYRSGRFKLAFSPAMQRYLKEHQRDFMPEDTKAGMIQAYLDKYTGSMVCS 362
Query: 712 HSLAK 716
L K
Sbjct: 363 KQLYK 367
>gi|160894278|ref|ZP_02075055.1| hypothetical protein CLOL250_01831 [Clostridium sp. L2-50]
gi|238925939|ref|YP_002939457.1| hypothetical protein EUBREC_3597 [Eubacterium rectale ATCC 33656]
gi|156863979|gb|EDO57410.1| hypothetical protein CLOL250_01831 [Clostridium sp. L2-50]
gi|238877616|gb|ACR77323.1| Hypothetical protein EUBREC_3597 [Eubacterium rectale ATCC 33656]
Length = 407
Score = 42.0 bits (97), Expect = 0.41, Method: Composition-based stats.
Identities = 44/256 (17%), Positives = 80/256 (31%), Gaps = 36/256 (14%)
Query: 477 FESEEVMDYFTRCVGMALLG--------GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528
F EV +Y + + ++G G K + + + G G+GKST + +
Sbjct: 96 FLGAEVSEYTYEVMKLFMIGTIARISCPGIKFEVMLCLVGGQGAGKSTFLRFLA------ 149
Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588
E + ++ G I+ E + K +
Sbjct: 150 ----MEDDWFTDDLKKMDDD--NVYRKIQGHLIIEFPEM-----VAILNAKNVEDTKSFM 198
Query: 589 ARLN--YGNTYSESPASFT---PFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASF 643
+R Y Y P F + L D + RR++ I + A
Sbjct: 199 SRQKDTYKTPYDRHPKDHKRQCVFAGSSNSLDFLPMDRSGNRRFLPILCNMEEAETHILD 258
Query: 644 AQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQ---GTDTYQAWIDDC 700
+K +Y + W + ++ Y S + +P+ K E ++ DT + I D
Sbjct: 259 DEKTSREYIDQM--WA-EAMEIYRSGKCQLRLPKEMEKELCEYQKQFMQEDTKKELILDY 315
Query: 701 CDIGENLWEESHSLAK 716
+ E S L
Sbjct: 316 LEHYEGSMVCSRQLYS 331
>gi|238923194|ref|YP_002936709.1| hypothetical protein EUBREC_0789 [Eubacterium rectale ATCC 33656]
gi|238925054|ref|YP_002938570.1| hypothetical protein EUBREC_2706 [Eubacterium rectale ATCC 33656]
gi|238874868|gb|ACR74575.1| Hypothetical protein EUBREC_0789 [Eubacterium rectale ATCC 33656]
gi|238876729|gb|ACR76436.1| Hypothetical protein EUBREC_2706 [Eubacterium rectale ATCC 33656]
Length = 442
Score = 42.0 bits (97), Expect = 0.42, Method: Composition-based stats.
Identities = 40/245 (16%), Positives = 69/245 (28%), Gaps = 28/245 (11%)
Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539
E + + + A G K + + + G G+GKST L+
Sbjct: 140 EALKLFLLGAISRAFQPGCKFEIMLCLVGGQGAGKSTFFRLLA----------VRDEWFS 189
Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLN--YGNTY 597
+ +L G I+ +SE + A K + +R Y Y
Sbjct: 190 DDLRKLDDD--NVYRKLQGHWIIEMSEM-----MATANAKSIEEIKSFLSRQKEVYKIPY 242
Query: 598 SESP---ASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLE 654
P F + L D + RR+ IP + +
Sbjct: 243 ETHPADRPRQCVFGGTSNALDFLPLDRSGNRRF--IPVMVYPEQAEVHILEDEAASRAYI 300
Query: 655 AKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQG---TDTYQAWIDDCCDIGENLWEES 711
+ W + ++ Y S + + +E ++ DT I D S
Sbjct: 301 EQMWA-EAMEIYRSGRFKLAFSPAMQRYLKEHQRDFMPEDTKAGMIQAYLDRYTGSMVCS 359
Query: 712 HSLAK 716
L K
Sbjct: 360 KQLYK 364
>gi|123205982|ref|XP_001284808.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121847076|gb|EAX71878.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 211
Score = 42.0 bits (97), Expect = 0.42, Method: Composition-based stats.
Identities = 36/209 (17%), Positives = 67/209 (32%), Gaps = 19/209 (9%)
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGN 595
M N GK N S+ + +++ +E D +N+ +K + Y +
Sbjct: 1 MTNLENICGKFNSSIENMK---LIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKD 57
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
+ + N D RRY+V+ +D + L T +
Sbjct: 58 QRVCENVANFIMVSNNTVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDF 113
Query: 656 KKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
+ IP + E + Y+ ++D+ + + SL
Sbjct: 114 YNHLFSYFMTLDISKFNPRQIPHTEERQTLLEANKS-VYELFVDETDFVSLDER----SL 168
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLK 743
SY +Y ++ Y S RT N+K
Sbjct: 169 YDSYKQYCQE---YGYMTASKRTFLANVK 194
>gi|332027618|gb|EGI67688.1| DNA-binding protein RFX7 [Acromyrmex echinatior]
Length = 1223
Score = 42.0 bits (97), Expect = 0.42, Method: Composition-based stats.
Identities = 11/76 (14%), Positives = 26/76 (34%), Gaps = 5/76 (6%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
WI + ++ + Y+ Y + K +ST +KQ ++
Sbjct: 180 MWIKTHLEEDPDVSLPKQEVYDEYNMYCIRN---SMKPLSTADFGKVMKQ--VYPRVRPR 234
Query: 755 KIEKEWKSKRIIKGLK 770
++ S+ G++
Sbjct: 235 RLGTRGNSRYCYAGMR 250
>gi|297836963|ref|XP_002886363.1| AAA-type ATPase family protein [Arabidopsis lyrata subsp. lyrata]
gi|297332204|gb|EFH62622.1| AAA-type ATPase family protein [Arabidopsis lyrata subsp. lyrata]
Length = 827
Score = 42.0 bits (97), Expect = 0.42, Method: Composition-based stats.
Identities = 30/178 (16%), Positives = 56/178 (31%), Gaps = 29/178 (16%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAG---KANPSLIRLMGSR 560
I + G G+GK+ L I G + IN S I E +A +L +
Sbjct: 556 ILLFGPPGTGKTMLAKAIAKEAGASF-INVSMSTITSKWFGEDEKNVRALFTLASKVSPT 614
Query: 561 IVIISETNE--NDEINAAKIKQMTGGDCMTARLN-YGNTYSESPASFTPFIVPNKHLFVR 617
I+ + E + + + M + + + P + F
Sbjct: 615 IIFVDEVDSMLGQRTRVGEHEAM---RKIKNEFMSHWDGLMTKPGERILVLAATNRPF-- 669
Query: 618 NPDDAWWRRYIVIPFDKPI-------ANRDASF-----AQKLETKYTLEAKKWFLKGV 663
+ D+A RR F++ I NR+ +K++ + +G
Sbjct: 670 DLDEAIIRR-----FERRIMVGLPAVENREKILRTLLAKEKVDENLDYKELAMMTEGY 722
>gi|90078576|dbj|BAE88968.1| unnamed protein product [Macaca fascicularis]
Length = 398
Score = 42.0 bits (97), Expect = 0.43, Method: Composition-based stats.
Identities = 30/150 (20%), Positives = 54/150 (36%), Gaps = 19/150 (12%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL---IRLMGSR 560
+ + G G+GK+ L + + + I S+++Q E + L R
Sbjct: 178 VLLYGPPGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPS 236
Query: 561 IVIISETNENDEINAAKIKQMTGGDC----MTARLNYGNTYSESPASFTPFIVPNKHLFV 616
I+ + E D I +++++ +GGD L E+ + + N +
Sbjct: 237 IIFMDEI---DSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATN---RI 290
Query: 617 RNPDDAWWR--RY-IVIPFDKPIANRDASF 643
D A R R I F P N +A
Sbjct: 291 DILDSALLRPGRIDRKIEF--PPPNEEARL 318
>gi|320009650|gb|ADW04500.1| Bifunctional DNA primase/polymerase [Streptomyces flavogriseus ATCC
33331]
Length = 338
Score = 42.0 bits (97), Expect = 0.43, Method: Composition-based stats.
Identities = 26/183 (14%), Positives = 46/183 (25%), Gaps = 13/183 (7%)
Query: 51 ACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDT----FEILHGTPIVRIGQKPKILIPF 106
A G+G CG L D+D ++ + L P P
Sbjct: 122 ATGYGIACGRQPHRLIGIDLDIDTTHGNDSVAALRQLALQHLFTIPPTVTVLTPSGGRHL 181
Query: 107 -RMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLL 165
G+ + +D+ G G Y V T Y P
Sbjct: 182 WLTGPPGVSVPNSAGRLAPGIDVRGAGGYLVGPG-SVTTHGRYRLAPGTAHLAPAPCPRP 240
Query: 166 SEEDVEYLFKFFQEITVPLVKDKKSIIPS-------KTWTNNNNRQYTNREITAFLSCFG 218
+ + + VP ++++ N + A+ FG
Sbjct: 241 LLRLLTPPPRPRRSSAVPASSERQARQGEGLVQFVRAAHEGQRNTRLFWAACRAYEHGFG 300
Query: 219 EEF 221
++
Sbjct: 301 DDL 303
>gi|167518113|ref|XP_001743397.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778496|gb|EDQ92111.1| predicted protein [Monosiga brevicollis MX1]
Length = 994
Score = 42.0 bits (97), Expect = 0.43, Method: Composition-based stats.
Identities = 17/84 (20%), Positives = 35/84 (41%), Gaps = 6/84 (7%)
Query: 691 DTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGG 750
D WI + ++ E SL ++Y ++ E ++ + ++Q+
Sbjct: 390 DIVA-WIHEHYELKEAACVLRSSLYENYVKFCELT---SQEPTNAANFGKIIRQQ--FPQ 443
Query: 751 IKREKIEKEWKSKRIIKGLKLKPA 774
+K ++ +SK GL+LKP
Sbjct: 444 LKTRRLGTRGQSKYHYYGLRLKPT 467
>gi|323180722|gb|EFZ66267.1| ATPase family associated with various cellular activities family
protein [Escherichia coli 1180]
gi|332342321|gb|AEE55655.1| conserved hypothetical protein [Escherichia coli UMNK88]
Length = 373
Score = 42.0 bits (97), Expect = 0.44, Method: Composition-based stats.
Identities = 33/229 (14%), Positives = 78/229 (34%), Gaps = 39/229 (17%)
Query: 505 HIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRL----MGSR 560
G G GK+ + + G + + + + +M + ++G N L G
Sbjct: 134 IFVGPPGVGKTLTASWLAQKLGVPFYV-LDLTAVMSSYLGKSG--NNLRAALDFAKKGPC 190
Query: 561 IVIISETN-----ENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLF 615
++++ E + +D+ + ++K++ E P+S N
Sbjct: 191 VLLLDEIDSIAKKRSDDSDVGELKRLVT--------VILQEVDEWPSSSLLLAATNFAEL 242
Query: 616 VRNPDDAWWRRY-IVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD 674
+ D A WRR+ +V+ F+KP + ++ +W + ++
Sbjct: 243 I---DPALWRRFDLVLNFEKPDSESIKEAIKRFSGPDYAIFARWIDLLAIMFKNESFSN- 298
Query: 675 IPEVCLKAKEEERQ--------GTDTYQAWIDDCCDIGENLWEESHSLA 715
++ + R+ + ++I D + E E +A
Sbjct: 299 ----IERSINKFRRSVALGISSDEELIGSFIKDG--LSELDRNERKEIA 341
>gi|300924604|ref|ZP_07140566.1| ATPase, AAA family [Escherichia coli MS 182-1]
gi|300419235|gb|EFK02546.1| ATPase, AAA family [Escherichia coli MS 182-1]
Length = 373
Score = 42.0 bits (97), Expect = 0.44, Method: Composition-based stats.
Identities = 33/229 (14%), Positives = 78/229 (34%), Gaps = 39/229 (17%)
Query: 505 HIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRL----MGSR 560
G G GK+ + + G + + + + +M + ++G N L G
Sbjct: 134 IFVGPPGVGKTLTASWLAQKLGVPFYV-LDLTAVMSSYLGKSG--NNLRAALDFAKKGPC 190
Query: 561 IVIISETN-----ENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLF 615
++++ E + +D+ + ++K++ E P+S N
Sbjct: 191 VLLLDEIDSIAKKRSDDSDVGELKRLVT--------VILQEVDEWPSSSLLLAATNFAEL 242
Query: 616 VRNPDDAWWRRY-IVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD 674
+ D A WRR+ +V+ F+KP + ++ +W + ++
Sbjct: 243 I---DPALWRRFDLVLNFEKPDSESIKEAIKRFSGPDYAIFARWIDLLAIMFKNESFSN- 298
Query: 675 IPEVCLKAKEEERQ--------GTDTYQAWIDDCCDIGENLWEESHSLA 715
++ + R+ + ++I D + E E +A
Sbjct: 299 ----IERSINKFRRSVALGISSDEELIGSFIKDG--LSELDRNERKEIA 341
>gi|293418007|ref|ZP_06660629.1| phage protein [Escherichia coli B185]
gi|291430725|gb|EFF03723.1| phage protein [Escherichia coli B185]
Length = 889
Score = 42.0 bits (97), Expect = 0.44, Method: Composition-based stats.
Identities = 34/219 (15%), Positives = 70/219 (31%), Gaps = 24/219 (10%)
Query: 455 STGTPFVEGEP-SQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNK--AQRFIHI--RGV 509
+ + + + + +++ + F + ++ +G + + F + G
Sbjct: 491 TLQINYKKPDEFTASWVEDLWLAFGEKGIIT-LAFWLGSLFSEQIRDKEESFPFLEVTGE 549
Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569
G+GKSTL++ G + + + + L V++ E +
Sbjct: 550 PGTGKSTLIDFCWRLCGRDNYEGVDP---TKGSEAGWKRTFGQVAGLP----VVLIEADR 602
Query: 570 NDE------INAAKIKQMTGGDCMTARLNYGNTYSESPASFT--PFIVPNKHLFVRNPDD 621
D + +K + G + R N + F I N + N
Sbjct: 603 GDNAQKRGAFDFDNLKSLYNGGGIGVRGVKANNNNTYDPDFKGAIVIAQNARV---NASP 659
Query: 622 AWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFL 660
A R I I DK + D A + Y +E F+
Sbjct: 660 AIIERLIRIYTDKKRHSPDTRLAARRLELYPVEKVSGFI 698
>gi|123345603|ref|XP_001294919.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121873338|gb|EAX81989.1| hypothetical protein TVAG_290840 [Trichomonas vaginalis G3]
Length = 211
Score = 42.0 bits (97), Expect = 0.44, Method: Composition-based stats.
Identities = 36/209 (17%), Positives = 65/209 (31%), Gaps = 19/209 (9%)
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGN 595
M N GK N S+ + +++ +E D +N+ +K + Y +
Sbjct: 1 MTNLENICGKFNSSIENMK---LIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKD 57
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
+ + N D RRY+V+ +D + L T
Sbjct: 58 QRVCENVANFIMVSNNAVPMKLESSD---RRYVVVR-TSEAHMQDTEYFDDLAETLTPNF 113
Query: 656 KKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
+ IP + E + Y+ +ID+ + + SL
Sbjct: 114 YNHLFSYFMTLDISKFNPRQIPHTEERQTLLEANKS-VYELFIDET----DFECLDERSL 168
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLK 743
Y +Y ++ Y S RT N+K
Sbjct: 169 YDEYKQYCQE---YGYMAASKRTFLANVK 194
>gi|23455860|ref|NP_695090.1| hypothetical protein O1205p12 [Streptococcus phage O1205]
gi|2444092|gb|AAC79528.1| ORF12 [Streptococcus phage O1205]
Length = 269
Score = 42.0 bits (97), Expect = 0.44, Method: Composition-based stats.
Identities = 23/169 (13%), Positives = 51/169 (30%), Gaps = 5/169 (2%)
Query: 8 EQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYA 67
+ A G+ +IP+ K P + ++ ++ I ++ + +
Sbjct: 3 DYAINYQRMGYSVIPISKNGKTPL-ISFADKPPMTENDIRRVWRDNPDANIALKTDTFFV 61
Query: 68 FDIDSK-DEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHL 126
D+D D ++ E P P + K+ +
Sbjct: 62 IDVDMHGDVDGLTNLRNW-EHARLIPPTLQAITPSGGRHIYLKKDPNHPISQNIGMIEGV 120
Query: 127 DILGCGQYFVAYNIHPKTKKEYTWTT--PPHRFKVEDTPLLSEEDVEYL 173
DI ++ +K Y W T P + + PL + ++ +
Sbjct: 121 DIKAHVNNYILVPPSNNSKGYYEWDTVHSPKDGSITEAPLALIKVLQKM 169
>gi|39938879|ref|NP_950645.1| ATP-dependent Zn protease [Onion yellows phytoplasma OY-M]
gi|39721988|dbj|BAD04478.1| ATP-dependent Zn protease [Onion yellows phytoplasma OY-M]
Length = 764
Score = 42.0 bits (97), Expect = 0.44, Method: Composition-based stats.
Identities = 48/302 (15%), Positives = 96/302 (31%), Gaps = 46/302 (15%)
Query: 338 KNNVYIWSLTLDKITAS--IMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQN 395
N L+K+ + ++++ +F L++ N K R+N
Sbjct: 140 NQNQKEKQEELEKLVKEKDQLQTQENLQQQIFQLNQALNYVEANQKRIEELKTQKEYRKN 199
Query: 396 VEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGIL---DLETGQKVKPTKELYI 452
E K L + + ++ + L+ + + TK+
Sbjct: 200 QTELKNFKDFQLFLTDQKL------AFEKQK-----KNLTIQFNHLKENKSLPHTKKQ-- 246
Query: 453 TKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFT-RCVGMALLGGNKAQRFIHIRGVGG 511
+ + +E DL++ + ++ ++++ R G + G G
Sbjct: 247 -VTFKDVYGMETEKEELEDLLTYFHTNQSLINFDQVRPKGY------------LLYGPPG 293
Query: 512 SGKSTLMNLIKYAFGNQYV--INAEASDIMQNRPPEAGKANPSL---IRLMGSRIVIISE 566
+GK T + IK G V IN S Q E K + I+ I E
Sbjct: 294 TGK-TFL--IKALCGEANVHFINLIPSKFRQKYIGEGEKEVDKVWQEAESHDKTIIFIDE 350
Query: 567 TNENDEINAAKIKQMTGG-DCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625
+ N + I +GG + + L+ + ++ S N + D A
Sbjct: 351 IEGLENRNDSNIS--SGGVNVINTLLDKLDGFNSSNKKIVLMGATNNLHKI---DMALRS 405
Query: 626 RY 627
R+
Sbjct: 406 RF 407
>gi|209877256|ref|XP_002140070.1| 26S protease regulatory subunit 8 [Cryptosporidium muris RN66]
gi|209555676|gb|EEA05721.1| 26S protease regulatory subunit 8, putative [Cryptosporidium muris
RN66]
Length = 396
Score = 42.0 bits (97), Expect = 0.45, Method: Composition-based stats.
Identities = 31/150 (20%), Positives = 53/150 (35%), Gaps = 18/150 (12%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL---IRLMGSR 560
+ + G G+GK+ L + + + I S+++Q E + L R
Sbjct: 177 VLLYGPPGTGKTLLARAVAH-HTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPS 235
Query: 561 IVIISETNENDEINAAKIKQMTGGDCMT---ARLNYGNTYSESPASFTPFIVPNKHLFVR 617
++ + E D I + + + TG + L ES + + N +
Sbjct: 236 LIFMDEI---DSIGSQRTEGETGDSEVQRTMLELLNQLDGFESTQNIKVIMATN---RID 289
Query: 618 NPDDAWWR--RY-IVIPFDKPIANRDASFA 644
DDA R R I F P N DA +
Sbjct: 290 ILDDALLRPGRIDRKIEFPNP--NEDARYE 317
>gi|273809763|ref|YP_003344883.1| hypothetical protein [Streptococcus phage ALQ13.2]
gi|224812515|gb|ACN64908.1| unknown [Streptococcus phage ALQ13.2]
Length = 271
Score = 42.0 bits (97), Expect = 0.45, Method: Composition-based stats.
Identities = 24/174 (13%), Positives = 54/174 (31%), Gaps = 7/174 (4%)
Query: 4 MQWKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQ 63
M+ + A G+ +IP+ K P + ++ ++ I ++ +
Sbjct: 1 MKMVDYAINYQRMGYSVIPISKNGKTPL-ISFADKPPMTENDIRRVWRDNPDANIALKTD 59
Query: 64 PLYAFDIDSK-DEKTANTFKDTFE-ILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTES 121
+ D+D D ++ L + I P + K+
Sbjct: 60 TFFVIDVDMHGDVDGLTNLRNWEHARLIPKTLQAI--TPSGGRHIYLKKDPNHPISQNIG 117
Query: 122 TQGHLDILGCGQYFVAYNIHPKTKKEYTWTT--PPHRFKVEDTPLLSEEDVEYL 173
+DI ++ +K Y W T P + + PL + ++ +
Sbjct: 118 MIEGVDIKAHVNNYILVPPSNNSKGYYEWDTVHSPKDGSITEAPLALIKVLQKM 171
>gi|242057957|ref|XP_002458124.1| hypothetical protein SORBIDRAFT_03g027270 [Sorghum bicolor]
gi|241930099|gb|EES03244.1| hypothetical protein SORBIDRAFT_03g027270 [Sorghum bicolor]
Length = 696
Score = 42.0 bits (97), Expect = 0.45, Method: Composition-based stats.
Identities = 29/130 (22%), Positives = 49/130 (37%), Gaps = 14/130 (10%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGS---R 560
I + G G+GK+ L I G + +N S IM EA K+ +L L
Sbjct: 400 ILLFGPPGTGKTMLAKAIANEVGASF-MNISMSTIMSKWFGEAEKSIQALFSLATKIAPS 458
Query: 561 IVIISETNE----NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV 616
I+ + E + + N ++ + + MT + + P+ + F
Sbjct: 459 IIFMDEVDSMLGTRERSNENEVSRRIKSEFMT----HWDGILSKPSEKILVLGATNRPF- 513
Query: 617 RNPDDAWWRR 626
+ DDA RR
Sbjct: 514 -DLDDAIIRR 522
>gi|156743183|ref|YP_001433312.1| ATPase central domain-containing protein [Roseiflexus castenholzii
DSM 13941]
gi|156234511|gb|ABU59294.1| AAA ATPase central domain protein [Roseiflexus castenholzii DSM
13941]
Length = 459
Score = 42.0 bits (97), Expect = 0.45, Method: Composition-based stats.
Identities = 33/241 (13%), Positives = 60/241 (24%), Gaps = 74/241 (30%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQ----YVINAEASDI-------MQNRPPEAGKANPS 552
+ + G G+GK+T+ I G Y + + I Q A
Sbjct: 180 LFLYGPPGNGKTTIAEGIANMLGGNVLIPYAVEVDGQIIKLFDPLNHQVVEQPAAAPTHE 239
Query: 553 LIRLMGSRIVIISETNENDEINAAKIKQMTGGDCM---------TARLNYGNTYS----- 598
R ++ S + + + + M GG+ + Y Y
Sbjct: 240 PAVSFEGRPIVDSPLPDRRWLVCKRPRVMVGGELILEQLELIFDPIAKVYEAPYQMKANG 299
Query: 599 -----------------------------------------ESPASFTPFIVPNKHLFVR 617
+ P N
Sbjct: 300 GLFLIDDFGRQKCRPQDLLNRWIVPLEKKVDFLALQTGKKIQVPFDVLIVFSTNLSPQ-D 358
Query: 618 NPDDAWWRRYI-VIPFDKPIANRDASFAQKLE----TKYTLEAKKWFLKGVKAYISKGLD 672
DDA+ RR I P + Q++ Y+ E ++ + ++ Y G D
Sbjct: 359 LVDDAFLRRIRHKIEVPNPTPEEFRAIFQRVAKAKNIPYSDEGLRYLI--LERYKRDGRD 416
Query: 673 V 673
+
Sbjct: 417 L 417
>gi|331694991|ref|YP_004331230.1| Bifunctional DNA primase/polymerase [Pseudonocardia dioxanivorans
CB1190]
gi|326949680|gb|AEA23377.1| Bifunctional DNA primase/polymerase [Pseudonocardia dioxanivorans
CB1190]
Length = 315
Score = 42.0 bits (97), Expect = 0.46, Method: Composition-based stats.
Identities = 44/244 (18%), Positives = 61/244 (25%), Gaps = 51/244 (20%)
Query: 17 GFKLIPLRLGDKRP------------------QRLGKWEEQLLSSEKIDKLPACGFGFVC 58
G+ + PL KRP LG + ++I A G F
Sbjct: 22 GWPVFPLHPATKRPALHGHAHCPRTGPCAGADGHLGWEQRATTDPDRIHTAWAAGRAFNI 81
Query: 59 GVGEQP--LYAFDIDSKDEKTANTFK------------DTFEILHGTPIVRIGQKPKILI 104
G+ P L D D+ D A + + P P
Sbjct: 82 GLATGPAGLVVIDCDT-DTDGAPRAQWAGAGGGLDVLHRLADQAGALPATFTVATPSGGT 140
Query: 105 PFRMNKEGIKKKK-TTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTP 163
F + + T +D G Y VA TTP + + D
Sbjct: 141 HFYYRAPACDELRNTAGLLGWKIDSRAHGGYVVAAGS----------TTPAGAYTITD-- 188
Query: 164 LLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYT--NREITAFLSCFGEEF 221
D L + P P +T T R R TA +
Sbjct: 189 ---ARDPVELPGWLFARLRPPPPPVIPTGPIRTGTGRRARYLDAALRAETARVHDAPASQ 245
Query: 222 YNGS 225
N S
Sbjct: 246 RNAS 249
>gi|139473201|ref|YP_001127916.1| ABC transporter ATP-binding protein [Streptococcus pyogenes str.
Manfredo]
gi|134271447|emb|CAM29667.1| ABC transporter ATP-binding protein [Streptococcus pyogenes str.
Manfredo]
Length = 464
Score = 41.6 bits (96), Expect = 0.46, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 503 FIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532
FI + G GSGKST + L+ + Y
Sbjct: 31 FIVLCGPSGSGKSTFLKLLNGIIPDYYAGK 60
>gi|123373458|ref|XP_001297621.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121877854|gb|EAX84691.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 211
Score = 41.6 bits (96), Expect = 0.46, Method: Composition-based stats.
Identities = 36/209 (17%), Positives = 67/209 (32%), Gaps = 19/209 (9%)
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGN 595
M N GK N S+ + +++ +E D +N+ +K + Y +
Sbjct: 1 MTNLENICGKFNSSIENMK---LIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKD 57
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
+ + N D RRY+V+ +D + L T +
Sbjct: 58 QRVCENVANFIMVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDF 113
Query: 656 KKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
+ IP + E + Y+ ++D+ + + SL
Sbjct: 114 YNHLFSYFMTLDISKFNPRQIPYTEERQTLLEANKS-VYELFVDETDFVSLDER----SL 168
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLK 743
SY +Y ++ Y S RT N+K
Sbjct: 169 YDSYKQYCQE---YGYMTASKRTFLANVK 194
>gi|123195131|ref|XP_001283229.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121842224|gb|EAX70299.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 211
Score = 41.6 bits (96), Expect = 0.46, Method: Composition-based stats.
Identities = 37/210 (17%), Positives = 66/210 (31%), Gaps = 19/210 (9%)
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGN 595
M N GK N S+ + +++ +E D +N+ +K + Y +
Sbjct: 1 MTNLENICGKFNSSIENMK---LIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKD 57
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
+ + N D RRY+V+ +D + L T
Sbjct: 58 QRVCENVANFIMVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTPNF 113
Query: 656 KKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
+ IP + E + Y+ +ID+ + + SL
Sbjct: 114 YNHLFSYFMTLDISKFNPRQIPHTEERQTLLEANKS-VYELFIDET----DFECLDERSL 168
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLKQ 744
SY +Y ++ Y S RT N+K
Sbjct: 169 YDSYKQYCQE---YGYMTASKRTFLANVKN 195
>gi|94989154|ref|YP_597255.1| cobalt transport ATP-binding protein [Streptococcus pyogenes
MGAS9429]
gi|94993045|ref|YP_601144.1| cobalt transport ATP-binding protein cbiO [Streptococcus pyogenes
MGAS2096]
gi|94542662|gb|ABF32711.1| cobalt transport ATP-binding protein [Streptococcus pyogenes
MGAS9429]
gi|94546553|gb|ABF36600.1| Cobalt transport ATP-binding protein cbiO [Streptococcus pyogenes
MGAS2096]
Length = 484
Score = 41.6 bits (96), Expect = 0.46, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 503 FIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532
FI + G GSGKST + L+ + Y
Sbjct: 51 FIVLCGPSGSGKSTFLKLLNGIIPDYYAGK 80
>gi|50914860|ref|YP_060832.1| cobalt transport ATP-binding protein [Streptococcus pyogenes
MGAS10394]
gi|50903934|gb|AAT87649.1| Cobalt transport ATP-binding protein [Streptococcus pyogenes
MGAS10394]
Length = 484
Score = 41.6 bits (96), Expect = 0.46, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 503 FIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532
FI + G GSGKST + L+ + Y
Sbjct: 51 FIVLCGPSGSGKSTFLKLLNGIIPDYYAGK 80
>gi|71911334|ref|YP_282884.1| cobalt ABC transporter ATP-binding protein [Streptococcus pyogenes
MGAS5005]
gi|71854116|gb|AAZ52139.1| cobalt transport ATP-binding protein cbiO [Streptococcus pyogenes
MGAS5005]
Length = 484
Score = 41.6 bits (96), Expect = 0.46, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 503 FIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532
FI + G GSGKST + L+ + Y
Sbjct: 51 FIVLCGPSGSGKSTFLKLLNGIIPDYYAGK 80
>gi|71904173|ref|YP_280976.1| cobalt transport ATP-binding protein cbiO [Streptococcus pyogenes
MGAS6180]
gi|71803268|gb|AAX72621.1| cobalt transport ATP-binding protein cbiO [Streptococcus pyogenes
MGAS6180]
Length = 484
Score = 41.6 bits (96), Expect = 0.46, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 503 FIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532
FI + G GSGKST + L+ + Y
Sbjct: 51 FIVLCGPSGSGKSTFLKLLNGIIPDYYAGK 80
>gi|15675626|ref|NP_269800.1| putative ABC transporter ATP-binding protein [Streptococcus
pyogenes M1 GAS]
gi|13622835|gb|AAK34521.1| putative ABC transporter (ATP-binding protein) [Streptococcus
pyogenes M1 GAS]
Length = 464
Score = 41.6 bits (96), Expect = 0.46, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 503 FIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532
FI + G GSGKST + L+ + Y
Sbjct: 31 FIVLCGPSGSGKSTFLKLLNGIIPDYYAGK 60
>gi|19746734|ref|NP_607870.1| ABC transporter ATP-binding protein [Streptococcus pyogenes
MGAS8232]
gi|19748962|gb|AAL98369.1| putative ABC transporter (ATP-binding protein) [Streptococcus
pyogenes MGAS8232]
Length = 481
Score = 41.6 bits (96), Expect = 0.46, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 503 FIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532
FI + G GSGKST + L+ + Y
Sbjct: 48 FIVLCGPSGSGKSTFLKLLNGIIPDYYAGK 77
>gi|21911089|ref|NP_665357.1| putative ABC transporter ATP-binding protein [Streptococcus
pyogenes MGAS315]
gi|28895226|ref|NP_801576.1| ABC transporter ATP-binding protein [Streptococcus pyogenes SSI-1]
gi|21905299|gb|AAM80160.1| putative ABC transporter (ATP-binding protein) [Streptococcus
pyogenes MGAS315]
gi|28810472|dbj|BAC63409.1| putative ABC transporter (ATP-binding protein) [Streptococcus
pyogenes SSI-1]
Length = 484
Score = 41.6 bits (96), Expect = 0.46, Method: Composition-based stats.
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 503 FIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532
FI + G GSGKST + L+ + Y
Sbjct: 51 FIVLCGPSGSGKSTFLKLLNGIIPDYYAGK 80
>gi|257052762|ref|YP_003130595.1| conjugation protein [Halorhabdus utahensis DSM 12940]
gi|256691525|gb|ACV11862.1| conjugation protein [Halorhabdus utahensis DSM 12940]
Length = 1342
Score = 41.6 bits (96), Expect = 0.46, Method: Composition-based stats.
Identities = 9/79 (11%), Positives = 23/79 (29%), Gaps = 6/79 (7%)
Query: 693 YQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIK 752
+ + + + ++ +Y E+ E + S L +
Sbjct: 1261 IGVFAAERLREDGDAIVMTAAVYDAYCEWAE---DRGLPVESKNWFARRLSN---HVSFE 1314
Query: 753 REKIEKEWKSKRIIKGLKL 771
R ++ + R G+ L
Sbjct: 1315 RTAENRDGTTVRCYAGIDL 1333
>gi|123307542|ref|XP_001291384.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121865349|gb|EAX78454.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 211
Score = 41.6 bits (96), Expect = 0.46, Method: Composition-based stats.
Identities = 37/209 (17%), Positives = 67/209 (32%), Gaps = 19/209 (9%)
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGN 595
M N GK N S+ + +++ +E D +N+ +K + Y +
Sbjct: 1 MTNLENICGKFNSSIENMK---LIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKD 57
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
+ + N D RRY+V+ +D + L T +
Sbjct: 58 QRVCENVANFIMVSNNVVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDF 113
Query: 656 KKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
+ IP + E + Y+ +ID+ + + SL
Sbjct: 114 YNHLFSYFMTLDISKFNPRQIPHTEERQTLLEANKS-VYELFIDETDFVSLDER----SL 168
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLK 743
SY +Y ++ Y S RT N+K
Sbjct: 169 YDSYKQYCQE---YGYMTASKRTFLANVK 194
>gi|71061112|dbj|BAE16265.1| E1 protein [Human papillomavirus type 27b]
Length = 643
Score = 41.6 bits (96), Expect = 0.47, Method: Composition-based stats.
Identities = 25/178 (14%), Positives = 54/178 (30%), Gaps = 21/178 (11%)
Query: 462 EGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLI 521
E + + + + E + + LL G + I G +GKS +
Sbjct: 429 EEGDWKPIVKFLR--HQGVEFVSFL--AAFKLLLKGVPKKNCIVFYGPADTGKSYFCMSL 484
Query: 522 KYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISE-TNENDEINAAKIKQ 580
G + A +S + L L S+I ++ + T + ++
Sbjct: 485 LQFLGGAVISYANSSS------------HFWLQPLSDSKIGLLDDATPQCWSYIDTYLRN 532
Query: 581 MTGGDCMTARLNYGNTYS-ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637
+ G+ ++ + + P I N + + R + F+ P
Sbjct: 533 LLDGNPVSIDRKHKTLLQLKCPP---LMITTNINPLEEDRWKYLRSRLTLFTFNNPFP 587
>gi|123395142|ref|XP_001300690.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121881768|gb|EAX87760.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 211
Score = 41.6 bits (96), Expect = 0.48, Method: Composition-based stats.
Identities = 36/209 (17%), Positives = 66/209 (31%), Gaps = 19/209 (9%)
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGN 595
M N GK N S+ + +++ +E D +N+ +K + Y +
Sbjct: 1 MTNLENICGKFNSSIENMK---LIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKD 57
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
+ + N D RRY+V+ +D + L T +
Sbjct: 58 QRVCENVANFIMVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDF 113
Query: 656 KKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
+ IP + E + Y+ +ID+ + + SL
Sbjct: 114 YNHLFSYFMTLDISKFNPRQIPHTEERQTLLETNKS-VYELFIDETDFVSLDEK----SL 168
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLK 743
Y +Y ++ Y S RT N+K
Sbjct: 169 YDEYKQYCQE---YGYMAASKRTFLANVK 194
>gi|123315939|ref|XP_001292239.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121867498|gb|EAX79309.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 211
Score = 41.6 bits (96), Expect = 0.48, Method: Composition-based stats.
Identities = 37/210 (17%), Positives = 65/210 (30%), Gaps = 19/210 (9%)
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGN 595
M N GK N S+ + +++ +E D +N+ +K + Y +
Sbjct: 1 MTNLENICGKFNSSIENMK---LIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYRD 57
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
+ + N D RRY+V+ +D + L T
Sbjct: 58 QRVCENVANFIMVSNNAVPMKLESSD---RRYVVVR-TSEAHMQDTEYFDDLAETLTPNF 113
Query: 656 KKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
+ IP + E + Y+ +ID+ + SL
Sbjct: 114 YNHLFSYFMTLDISKFNPRQIPHTEERQTLLEANKS-VYELFIDETNFECLDER----SL 168
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLKQ 744
SY +Y ++ Y S RT N+K
Sbjct: 169 YDSYKQYCQE---YGYMTASKRTFLANVKN 195
>gi|291453089|ref|ZP_06592479.1| hypothetical protein SSHG_03382 [Streptomyces albus J1074]
gi|291356038|gb|EFE82940.1| hypothetical protein SSHG_03382 [Streptomyces albus J1074]
Length = 288
Score = 41.6 bits (96), Expect = 0.48, Method: Composition-based stats.
Identities = 26/163 (15%), Positives = 40/163 (24%), Gaps = 25/163 (15%)
Query: 17 GFKLIPLRLGDKRPQ---------------RLGKWEEQLLSSEKIDK--LPACGFGFVCG 59
G+ + PLR G KRP WE + + + +
Sbjct: 7 GWPVFPLRPGGKRPALHPETRCPHAGACTNGHVTWERRATTDPDRIRAAWSTGDWNIGLA 66
Query: 60 VGEQPLYAFDID-----SKDEKTANTFKDTFEILHG-TPIVRIGQKPKILIPFRMNKEGI 113
G L D+D + A E P R + +
Sbjct: 67 TGPARLVVIDLDKPKDGTDAPDGAANLLALCEHAGQPVPTTRTVRTASGGTHLYFSAPDG 126
Query: 114 KKKKTTESTQGH-LDILGCGQYFVAYNIHPKTKKEYTWTTPPH 155
+ + T G +D G Y +A Y P
Sbjct: 127 TRLRNTAGALGPLIDTRAHGGYVLAPG-SVINGHAYRVEGPAL 168
>gi|123316920|ref|XP_001292494.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121868086|gb|EAX79564.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 211
Score = 41.6 bits (96), Expect = 0.48, Method: Composition-based stats.
Identities = 30/188 (15%), Positives = 59/188 (31%), Gaps = 16/188 (8%)
Query: 560 RIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV 616
++++ +E D +N+ +K + Y + + + N
Sbjct: 19 KLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMK 78
Query: 617 RNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-I 675
D RRY+V+ +D + L T + + I
Sbjct: 79 LESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQI 134
Query: 676 PEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIST 735
P + E + Y+ +ID+ + + SL Y +Y ++ Y S
Sbjct: 135 PHTEERQTLLEANKS-VYELFIDETDFVSLDER----SLYDEYKQYCQE---YGYMAASK 186
Query: 736 RTVTLNLK 743
RT N+K
Sbjct: 187 RTFLANVK 194
>gi|123277049|ref|XP_001289970.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121861801|gb|EAX77040.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 196
Score = 41.6 bits (96), Expect = 0.48, Method: Composition-based stats.
Identities = 30/188 (15%), Positives = 59/188 (31%), Gaps = 16/188 (8%)
Query: 560 RIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV 616
++++ +E D +N+ +K + Y + + + N
Sbjct: 2 KLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMK 61
Query: 617 RNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-I 675
D RRY+V+ +D + L T + + I
Sbjct: 62 LESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQI 117
Query: 676 PEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIST 735
P + E + Y+ +ID+ + + SL Y +Y ++ Y S
Sbjct: 118 PHTEERQTLLEANKS-VYELFIDETDFVSLDER----SLYDEYKQYCQE---YGYMAASK 169
Query: 736 RTVTLNLK 743
RT N+K
Sbjct: 170 RTFLANVK 177
>gi|123229211|ref|XP_001286063.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121850859|gb|EAX73133.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 194
Score = 41.6 bits (96), Expect = 0.48, Method: Composition-based stats.
Identities = 30/188 (15%), Positives = 59/188 (31%), Gaps = 16/188 (8%)
Query: 560 RIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV 616
++++ +E D +N+ +K + Y + + + N
Sbjct: 2 KLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMK 61
Query: 617 RNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-I 675
D RRY+V+ +D + L T + + I
Sbjct: 62 LESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQI 117
Query: 676 PEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIST 735
P + E + Y+ +ID+ + + SL Y +Y ++ Y S
Sbjct: 118 PHTEERQTLLEANKS-VYELFIDETDFVSLDER----SLYDEYKQYCQE---YGYMAASK 169
Query: 736 RTVTLNLK 743
RT N+K
Sbjct: 170 RTFLANVK 177
>gi|299738457|ref|XP_001838369.2| ATP-dependent DNA helicase PIF1 [Coprinopsis cinerea okayama7#130]
gi|298403315|gb|EAU83557.2| ATP-dependent DNA helicase PIF1 [Coprinopsis cinerea okayama7#130]
Length = 1697
Score = 41.6 bits (96), Expect = 0.48, Method: Composition-based stats.
Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 5/56 (8%)
Query: 496 GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANP 551
G N Q + + G GG+GKS L+ I + +A + A+P
Sbjct: 1166 GKNPDQLLMIVHGQGGTGKSLLIQSITQTL-----RDMDAEQFLGKAATSGIAASP 1216
>gi|295103652|emb|CBL01196.1| Predicted P-loop ATPase and inactivated derivatives
[Faecalibacterium prausnitzii SL3/3]
Length = 445
Score = 41.6 bits (96), Expect = 0.48, Method: Composition-based stats.
Identities = 43/283 (15%), Positives = 77/283 (27%), Gaps = 35/283 (12%)
Query: 446 PTKELYITKSTGTPFVEGEPSQEFLDLVSGYFES----EEVMDYFTRCVGMALLGGNKAQ 501
Y+ + + E + L G E + + + A G K +
Sbjct: 108 HPIRDYL---SALVWDGTERIRFCLRHFLGADADDYTYEALKLFLLGAISRAFQPGCKFE 164
Query: 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRI 561
+ + G G+GKST L+ + +L G I
Sbjct: 165 IMLCLVGGQGAGKSTFFRLLA----------VRDEWFSDDLRKLDDD--NVYRKLQGHWI 212
Query: 562 VIISETNENDEINAAKIKQMTGGDCMTARLN--YGNTYSESP---ASFTPFIVPNKHLFV 616
+ +SE + A K + +R Y Y P F + L
Sbjct: 213 IEMSEM-----MATANAKSIEEIKSFLSRQKEVYKIPYETHPADRPRQCVFGGTSNALDF 267
Query: 617 RNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIP 676
D + RR+ IP + + + W + ++ Y S +
Sbjct: 268 LPLDRSGNRRF--IPVMVYPEQAEVHILEDEAASRAYIEQMWA-EAMEIYRSGRFKLAFS 324
Query: 677 EVCLKAKEEERQG---TDTYQAWIDDCCDIGENLWEESHSLAK 716
+ +E ++ DT I + S L K
Sbjct: 325 PTMQRYLKEHQRDFMPEDTKAGMIQAYLEKYTGSMVCSKQLYK 367
>gi|169634211|ref|YP_001707947.1| putative primase [Acinetobacter baumannii SDF]
gi|169153003|emb|CAP02061.1| conserved hypothetical protein; putative primase [Acinetobacter
baumannii]
Length = 909
Score = 41.6 bits (96), Expect = 0.48, Method: Composition-based stats.
Identities = 37/180 (20%), Positives = 71/180 (39%), Gaps = 21/180 (11%)
Query: 499 KAQRFIHI--RGVGGSGKSTLMNLIKYAFG--NQYVINAEASDIMQNRPPEAGKANPSLI 554
K + F + G G+GKST++N + G + + + N+ E+G
Sbjct: 556 KHKSFPFLEIVGHAGTGKSTMLNFMWKLLGCEDNNG---DYEGLDPNKTSESGLIRTF-- 610
Query: 555 RLMGSRIVIISETNEN-------DEINAAKIKQMTGGDCMTARLNY--GNTYSESPASFT 605
R + + V++ E++ + + N +K + G + AR GN + P +
Sbjct: 611 RQVSNLPVLLIESDRSGENQPYTRQFNWDMLKTLYDGGSLGARGMKTGGNETYDPPFMGS 670
Query: 606 PFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKA 665
+ N + N +A R++ I F+K + A K KY +E +F+
Sbjct: 671 LIVSQNAEV---NGSEAIKGRFLHIGFEKKHLTAQSLAASKRLQKYKIEDVSYFILSCLE 727
>gi|123243573|ref|XP_001288478.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121857773|gb|EAX75548.1| hypothetical protein TVAG_338950 [Trichomonas vaginalis G3]
Length = 211
Score = 41.6 bits (96), Expect = 0.48, Method: Composition-based stats.
Identities = 36/209 (17%), Positives = 66/209 (31%), Gaps = 19/209 (9%)
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGN 595
M N GK N S+ + +++ +E D +N+ +K + Y +
Sbjct: 1 MTNLENICGKFNSSIENMK---LIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKD 57
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
+ + N D RRY+V+ +D + L T E
Sbjct: 58 QRVCENVANFIMVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDALSEYLTPEF 113
Query: 656 KKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
+ IP + E + Y+ +I++ + + SL
Sbjct: 114 YNHLFSYFMTLDISKFNPRQIPHTEERQTLLEANKS-VYELFIEE----SDFECLDEKSL 168
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLK 743
Y +Y ++ Y S RT N+K
Sbjct: 169 YDEYKQYCQE---YGYMPASKRTFLANVK 194
>gi|86739908|ref|YP_480308.1| hypothetical protein Francci3_1201 [Frankia sp. CcI3]
gi|86566770|gb|ABD10579.1| conserved hypothetical protein 2SC10A7.05c [Frankia sp. CcI3]
Length = 295
Score = 41.6 bits (96), Expect = 0.49, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 37/135 (27%), Gaps = 12/135 (8%)
Query: 37 EEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRI 96
++ + +P G L DID ++ T + TP +
Sbjct: 63 TDRNRIVAMLAAVPDGLLAIRTGTAAG-LAVIDIDPRNGG-------TLDRSLMTPTAAV 114
Query: 97 GQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYN-IHPKTKKEYTW--TTP 153
G + +DI G VA +HP T + Y W T P
Sbjct: 115 ATG-GGGWHLYYRHPGHPVLSRPLTGAPGIDIKADGGLVVAPPSLHPTTGRPYQWAGTRP 173
Query: 154 PHRFKVEDTPLLSEE 168
++ +
Sbjct: 174 VAEMPPALIAAVAAD 188
>gi|123185550|ref|XP_001281343.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121835838|gb|EAX68413.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 211
Score = 41.6 bits (96), Expect = 0.49, Method: Composition-based stats.
Identities = 37/209 (17%), Positives = 67/209 (32%), Gaps = 19/209 (9%)
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGN 595
M N GK N S+ + +++ +E D +N+ +K + Y +
Sbjct: 1 MTNLENICGKFNSSIENMK---LIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKD 57
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
+ + N D RRY+V+ +D + L T +
Sbjct: 58 QRVCENVANFIMVSNNSVPMKLESSD---RRYVVVR-TSEAHMQDTEYFDDLAETLTSDF 113
Query: 656 KKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
+ IP + E + Y+ +ID+ + + SL
Sbjct: 114 YNHLFSYFMTLDISKFNPRQIPHTEERQTLLEANKS-VYELFIDET----DFECLDERSL 168
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLK 743
SY +Y ++ Y S RT N+K
Sbjct: 169 YDSYKQYCQE---YGYMTASKRTFLANVK 194
>gi|239981226|ref|ZP_04703750.1| hypothetical protein SalbJ_17449 [Streptomyces albus J1074]
Length = 296
Score = 41.6 bits (96), Expect = 0.50, Method: Composition-based stats.
Identities = 26/163 (15%), Positives = 40/163 (24%), Gaps = 25/163 (15%)
Query: 17 GFKLIPLRLGDKRPQ---------------RLGKWEEQLLSSEKIDK--LPACGFGFVCG 59
G+ + PLR G KRP WE + + + +
Sbjct: 15 GWPVFPLRPGGKRPALHPETRCPHAGACTNGHVTWERRATTDPDRIRAAWSTGDWNIGLA 74
Query: 60 VGEQPLYAFDID-----SKDEKTANTFKDTFEILHG-TPIVRIGQKPKILIPFRMNKEGI 113
G L D+D + A E P R + +
Sbjct: 75 TGPARLVVIDLDKPKDGTDAPDGAANLLALCEHAGQPVPTTRTVRTASGGTHLYFSAPDG 134
Query: 114 KKKKTTESTQGH-LDILGCGQYFVAYNIHPKTKKEYTWTTPPH 155
+ + T G +D G Y +A Y P
Sbjct: 135 TRLRNTAGALGPLIDTRAHGGYVLAPG-SVINGHAYRVEGPAL 176
>gi|160934588|ref|ZP_02081974.1| hypothetical protein CLOLEP_03461 [Clostridium leptum DSM 753]
gi|156866041|gb|EDO59413.1| hypothetical protein CLOLEP_03461 [Clostridium leptum DSM 753]
Length = 445
Score = 41.6 bits (96), Expect = 0.50, Method: Composition-based stats.
Identities = 43/284 (15%), Positives = 77/284 (27%), Gaps = 37/284 (13%)
Query: 446 PTKELYITKSTGTPFVEGEPSQEF--LDLVSGYFES---EEVMDYFTRCVGMALLGGNKA 500
Y++ +G F + + E + + + A G K
Sbjct: 108 HPIRDYLSSLV----WDGTERIRFCLRHFLGADTDDYTYEALKLFLLGAISRAFQPGCKF 163
Query: 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSR 560
+ + + G G+GKST L+ + +L G
Sbjct: 164 EIMLCLVGGQGAGKSTFFRLLA----------VRDEWFSDDLRKLDDD--NVYRKLQGHW 211
Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLN--YGNTYSESP---ASFTPFIVPNKHLF 615
I+ +SE + A K + +R Y Y P F + L
Sbjct: 212 IIEMSEM-----MATANAKSIEEIKSFLSRQKEVYKIPYETHPADRPRQCVFGGTSNALD 266
Query: 616 VRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDI 675
D + RR+ IP + + + W + ++ Y S +
Sbjct: 267 FLPLDRSGNRRF--IPVMVYPEQAEVHILEDEAASRAYIEQMWA-EAMEIYRSGRFKLAF 323
Query: 676 PEVCLKAKEEERQG---TDTYQAWIDDCCDIGENLWEESHSLAK 716
+ +E ++ DT I D S L K
Sbjct: 324 SPTMQRYLKEHQRDFMPEDTKAGMIQAYLDKYTGNMVCSKQLYK 367
>gi|270009668|gb|EFA06116.1| hypothetical protein TcasGA2_TC008959 [Tribolium castaneum]
Length = 1009
Score = 41.6 bits (96), Expect = 0.50, Method: Composition-based stats.
Identities = 17/91 (18%), Positives = 31/91 (34%), Gaps = 9/91 (9%)
Query: 687 RQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746
R + +WI + L + + Y+ Y Q K +S +KQ
Sbjct: 106 RSEINRTISWIKTHLEEDAALSLPKQEVYEEYTVYCTQNQ---IKSLSQADFGKVMKQ-- 160
Query: 747 FIGGIKREKIEKEWKSKRIIKGLK----LKP 773
++ ++ S+ GL+ LKP
Sbjct: 161 VYPKVRARRLGTRGNSRYCYSGLRRCIKLKP 191
>gi|189239377|ref|XP_001812755.1| PREDICTED: similar to rfx5 [Tribolium castaneum]
Length = 1015
Score = 41.6 bits (96), Expect = 0.50, Method: Composition-based stats.
Identities = 17/91 (18%), Positives = 31/91 (34%), Gaps = 9/91 (9%)
Query: 687 RQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746
R + +WI + L + + Y+ Y Q K +S +KQ
Sbjct: 105 RSEINRTISWIKTHLEEDAALSLPKQEVYEEYTVYCTQNQ---IKSLSQADFGKVMKQ-- 159
Query: 747 FIGGIKREKIEKEWKSKRIIKGLK----LKP 773
++ ++ S+ GL+ LKP
Sbjct: 160 VYPKVRARRLGTRGNSRYCYSGLRRCIKLKP 190
>gi|123242313|ref|XP_001288212.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121857036|gb|EAX75282.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 210
Score = 41.6 bits (96), Expect = 0.50, Method: Composition-based stats.
Identities = 37/210 (17%), Positives = 65/210 (30%), Gaps = 19/210 (9%)
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGN 595
M N GK N S+ + +++ +E D +N+ +K + Y +
Sbjct: 1 MTNLENICGKFNSSIENMK---LIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKD 57
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
+ + N D RRY+V+ +D + L T
Sbjct: 58 QRVCENVANFVMVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTPNF 113
Query: 656 KKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
+ IP + E + Y+ +ID+ + SL
Sbjct: 114 YNHLFSYFMTLDISNFNPRQIPYTEERQTLLEANKS-VYELFIDETNFECLDER----SL 168
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLKQ 744
SY +Y ++ Y S RT N+K
Sbjct: 169 YDSYKQYCQE---YGYMAASKRTFLANVKN 195
>gi|323187922|gb|EFZ73217.1| zinc-binding domain of primase-helicase family protein [Escherichia
coli RN587/1]
Length = 770
Score = 41.6 bits (96), Expect = 0.50, Method: Composition-based stats.
Identities = 33/221 (14%), Positives = 71/221 (32%), Gaps = 34/221 (15%)
Query: 431 EQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF--ESEEVMDYFTR 488
D + +L TG G V G+ S +LD + +++ Y
Sbjct: 428 CPDDVYNLFTGW--------------GVVPVPGDVSP-YLDHLEKVVCSGNKQAFVYLVG 472
Query: 489 CVGMALLGGNKAQ--RFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEA 546
+ L+ + + ++ + G+GK T + + G QY + + + +
Sbjct: 473 WLAH-LVQKPDEKPSVAVVMKAIPGTGKGTTVKPVMQIMG-QYGVQVNGAGQITGKFN-- 528
Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606
+ +V E ++ A ++K + D + + P
Sbjct: 529 -------ATMANKLLVFADEVTVSNSREADRLKGIISEDTINLERKGIDP-EPMPNFSRL 580
Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKL 647
N +R RRY+V+ P ++ + +L
Sbjct: 581 IFASNSEQVLRASIR--ERRYLVLE-PSPEFAQEKHYFDRL 618
>gi|259417531|ref|ZP_05741450.1| peptide/opine/nickel uptake family ABC transporter,
permease/ATP-binding protein [Silicibacter sp.
TrichCH4B]
gi|259346437|gb|EEW58251.1| peptide/opine/nickel uptake family ABC transporter,
permease/ATP-binding protein [Silicibacter sp.
TrichCH4B]
Length = 627
Score = 41.6 bits (96), Expect = 0.51, Method: Composition-based stats.
Identities = 32/143 (22%), Positives = 50/143 (34%), Gaps = 13/143 (9%)
Query: 427 RFLGEQDGILD-----LETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEE 481
LG DG+ D L++G +P + ++ P EG+ +L + +
Sbjct: 260 NLLG--DGVRDALDPRLKSGALSRPMPTTMVRRTDPVPQPEGDGILSLCNLQTQFH---- 313
Query: 482 VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQN 541
V D + VG L + I G GSGKS I + + +
Sbjct: 314 VKDRIYKAVGGVDLSVRPGECLGII-GESGSGKSVTALSIMGLVASPPGV-ITGGAVHYK 371
Query: 542 RPPEAGKANPSLIRLMGSRIVII 564
G +L RL G R+ I
Sbjct: 372 GEDLIGAPYETLRRLRGDRVAYI 394
>gi|126649271|ref|XP_001388307.1| 26s protease regulatory subunit 8 [Cryptosporidium parvum Iowa II]
gi|32398680|emb|CAD98640.1| 26s protease regulatory subunit 8, probable [Cryptosporidium
parvum]
gi|126117401|gb|EAZ51501.1| 26s protease regulatory subunit 8, putative [Cryptosporidium parvum
Iowa II]
Length = 393
Score = 41.6 bits (96), Expect = 0.51, Method: Composition-based stats.
Identities = 30/168 (17%), Positives = 59/168 (35%), Gaps = 20/168 (11%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL---IRLMGSR 560
+ + G G+GK+ L + + + I S+++Q E + L R
Sbjct: 174 VLLYGPPGTGKTLLARAVAH-HTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPS 232
Query: 561 IVIISETNENDEINAAKIKQMTGGDCMT---ARLNYGNTYSESPASFTPFIVPNKHLFVR 617
++ + E D I + + + +G + L ES + + N +
Sbjct: 233 LIFMDEI---DSIGSQRTEGESGDSEVQRTMLELLNQLDGFESTQNIKIIMATN---RID 286
Query: 618 NPDDAWWR--RYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGV 663
DDA R R D+ I + + +LE K ++G+
Sbjct: 287 ILDDALLRPGRI-----DRKIEFPNPNEDARLEILKIHSRKMNLVRGI 329
>gi|225452592|ref|XP_002280981.1| PREDICTED: hypothetical protein isoform 1 [Vitis vinifera]
Length = 515
Score = 41.6 bits (96), Expect = 0.51, Method: Composition-based stats.
Identities = 30/175 (17%), Positives = 66/175 (37%), Gaps = 24/175 (13%)
Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFG-NQYVINAEASDI 538
++++ + A +G +R + G G+GKST+++ + G + Y D+
Sbjct: 262 DDLIAFSKAEEFYARIGR-AWKRGYLLYGPPGTGKSTMISAMANLLGYDVY-------DL 313
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMT--GGDCMTARLNYGNT 596
+ + LI + I++I + + + ++ A + K M G + A++
Sbjct: 314 ELTSVKDNTELRRLLIEISSRSIIVIEDIDCSLDVTAQRKKTMENDGEEEEKAKVQKHAK 373
Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWR-----RYIVIPFDKPIANRDASFAQK 646
P++ T + N D W R +V + D + +K
Sbjct: 374 EERKPSNVTLSGLLNFI-------DGLWSTCGGERVMVFT-TNHVEKLDPALIRK 420
>gi|291225648|ref|XP_002732818.1| PREDICTED: Pros45-like [Saccoglossus kowalevskii]
Length = 376
Score = 41.6 bits (96), Expect = 0.52, Method: Composition-based stats.
Identities = 31/151 (20%), Positives = 54/151 (35%), Gaps = 19/151 (12%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL---IRLMGSR 560
+ + G G+GK+ L + + + I S+++Q E + L R
Sbjct: 190 VLLYGPPGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPS 248
Query: 561 IVIISETNENDEINAAKIKQMTGGDC----MTARLNYGNTYSESPASFTPFIVPNKHLFV 616
I+ + E D I +++++ +GGD L ES + + N +
Sbjct: 249 IIFMDEI---DSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFESHKNIKVIMATN---RI 302
Query: 617 RNPDDAWWR--RY-IVIPFDKPIANRDASFA 644
D A R R I F P N +A
Sbjct: 303 DILDSALLRPGRIDRKIEF--PPPNEEARLD 331
>gi|123299070|ref|XP_001290938.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121864255|gb|EAX78008.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 211
Score = 41.6 bits (96), Expect = 0.52, Method: Composition-based stats.
Identities = 37/210 (17%), Positives = 67/210 (31%), Gaps = 19/210 (9%)
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGN 595
M N GK N S+ + +++ +E D +N+ +K + Y +
Sbjct: 1 MTNLENICGKFNSSIENMK---LIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKD 57
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
+ + N D RRY+V+ +D + L T +
Sbjct: 58 QRVCENVANFIMVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDF 113
Query: 656 KKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
+ IP + E + Y+ +ID+ + + SL
Sbjct: 114 YNHLFSYFMTLDISKFNPRQIPHTEERQTLLEANKS-VYELFIDET----DFECLDERSL 168
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLKQ 744
SY +Y ++ Y S RT N+K
Sbjct: 169 YDSYKQYCQE---YGYMTASKRTFLANVKN 195
>gi|123251347|ref|XP_001288952.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121859138|gb|EAX76022.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 211
Score = 41.6 bits (96), Expect = 0.52, Method: Composition-based stats.
Identities = 37/209 (17%), Positives = 66/209 (31%), Gaps = 19/209 (9%)
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGN 595
M N GK N S+ + +++ +E D +N+ +K + Y +
Sbjct: 1 MTNLENICGKFNSSIENMK---LIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKD 57
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
+ + N D RRY+V+ +D + L T +
Sbjct: 58 QRVCENVANFIMVSNNAVPMKLESSD---RRYVVVR-TSEAHMQDTEYFDDLAETLTSDF 113
Query: 656 KKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
+ IP + E + Y+ +ID+ + SL
Sbjct: 114 YNHLFSYFMTLDISKFNPRQIPHTEERQTLLEANKS-VYELFIDETNFECLDER----SL 168
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLK 743
SY +Y ++ Y S RT N+K
Sbjct: 169 YDSYKQYCQE---YGYMTASKRTFLANVK 194
>gi|123227269|ref|XP_001285968.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121850570|gb|EAX73038.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 194
Score = 41.6 bits (96), Expect = 0.52, Method: Composition-based stats.
Identities = 31/188 (16%), Positives = 60/188 (31%), Gaps = 16/188 (8%)
Query: 560 RIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV 616
++++ +E D +N+ +K + Y + + + N
Sbjct: 2 KLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFVMVSNNAVPMK 61
Query: 617 RNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-I 675
D RRY+V+ +D + L T + + I
Sbjct: 62 LESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQI 117
Query: 676 PEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIST 735
P + E + Y+ +ID+ + + SL SY +Y ++ Y S
Sbjct: 118 PHTEERQTLLEANKS-VYELFIDETDFVSLDER----SLYDSYKQYCQE---YGYMTASK 169
Query: 736 RTVTLNLK 743
RT N+K
Sbjct: 170 RTFLANVK 177
>gi|293982|gb|AAA67907.1| helicase [Autographa californica nucleopolyhedrovirus]
Length = 1221
Score = 41.6 bits (96), Expect = 0.52, Method: Composition-based stats.
Identities = 24/154 (15%), Positives = 59/154 (38%), Gaps = 9/154 (5%)
Query: 485 YFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544
+ + ++ I++ G GSGKS+ L+ Y++ D +
Sbjct: 894 MLMHFAASLAIPVDYGKKAIYMPGEPGSGKSSFFELL------DYLVLMHKFDDDNHSGE 947
Query: 545 EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604
+ + + + S++ I+E + + + K+ ++ + A++
Sbjct: 948 SNKETSDKEVSKLNSQLYTINELKQ---CSESYFKKHADSSKSDSKSRKYQGLLKYEANY 1004
Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN 638
IV NK L+V + DD R++++ + +
Sbjct: 1005 KMLIVNNKPLYVDDYDDGVQDRFLIVYTNHKFVD 1038
>gi|9627838|ref|NP_054125.1| helicase [Autographa californica nucleopolyhedrovirus]
gi|1174931|sp|P24307|V143_NPVAC RecName: Full=ATP-dependent DNA helicase P143
gi|559164|gb|AAA66725.1| helicase [Autographa californica nucleopolyhedrovirus]
Length = 1221
Score = 41.6 bits (96), Expect = 0.52, Method: Composition-based stats.
Identities = 24/154 (15%), Positives = 59/154 (38%), Gaps = 9/154 (5%)
Query: 485 YFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544
+ + ++ I++ G GSGKS+ L+ Y++ D +
Sbjct: 894 MLMHFAASLAIPVDYGKKAIYMPGEPGSGKSSFFELL------DYLVLMHKFDDDNHSGE 947
Query: 545 EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604
+ + + + S++ I+E + + + K+ ++ + A++
Sbjct: 948 SNKETSDKEVSKLNSQLYTINELKQ---CSESYFKKHADSSKSDSKSRKYQGLLKYEANY 1004
Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN 638
IV NK L+V + DD R++++ + +
Sbjct: 1005 KMLIVNNKPLYVDDYDDGVQDRFLIVYTNHKFVD 1038
>gi|256786521|ref|ZP_05524952.1| hypothetical protein SlivT_18689 [Streptomyces lividans TK24]
gi|289770413|ref|ZP_06529791.1| conserved hypothetical protein [Streptomyces lividans TK24]
gi|289700612|gb|EFD68041.1| conserved hypothetical protein [Streptomyces lividans TK24]
Length = 291
Score = 41.6 bits (96), Expect = 0.53, Method: Composition-based stats.
Identities = 27/113 (23%), Positives = 36/113 (31%), Gaps = 19/113 (16%)
Query: 51 ACGFGFVCGVGEQPLYAFDIDSK------DEKTANTFKDTFEILHGTPIVRIGQKPKILI 104
A G+G CG+ L D+D+K D TA + L P + P
Sbjct: 83 ATGYGIACGLPPHHLIGVDLDTKSAAAQTDSATALR-ELALRHLFTIPPTVVVLTPSGGR 141
Query: 105 PFRMNKE--GIKKKKTTESTQGHLDILGCGQYFV---------AYNIHPKTKK 146
+ + G +DI G G Y V AY I P T
Sbjct: 142 HLWLTGPPDHVVPNSAGRLAPG-IDIRGAGGYLVGPGSRTRHGAYTIAPGTSH 193
>gi|114680148|ref|YP_758561.1| DNA helicase [Plutella xylostella multiple nucleopolyhedrovirus]
gi|91982212|gb|ABE68480.1| DNA helicase [Plutella xylostella multiple nucleopolyhedrovirus]
Length = 1221
Score = 41.6 bits (96), Expect = 0.53, Method: Composition-based stats.
Identities = 24/154 (15%), Positives = 59/154 (38%), Gaps = 9/154 (5%)
Query: 485 YFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544
+ + ++ I++ G GSGKS+ L+ Y++ D +
Sbjct: 894 MLMHFAASLAIPVDYGKKAIYMPGEPGSGKSSFFELL------DYLVLMHKFDDDNHSGE 947
Query: 545 EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604
+ + + + S++ I+E + + + K+ ++ + A++
Sbjct: 948 SNKETSDKEVSKLNSQLYTINELKQ---CSESYFKKHADSSKSDSKSRKYQGLLKYEANY 1004
Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN 638
IV NK L+V + DD R++++ + +
Sbjct: 1005 KMLIVNNKPLYVDDYDDGVQDRFLIVYTNHKFVD 1038
>gi|197336401|ref|YP_002157278.1| AAA ATPase, central domain protein [Vibrio fischeri MJ11]
gi|197317891|gb|ACH67338.1| AAA ATPase, central domain protein [Vibrio fischeri MJ11]
Length = 324
Score = 41.6 bits (96), Expect = 0.53, Method: Composition-based stats.
Identities = 25/165 (15%), Positives = 51/165 (30%), Gaps = 24/165 (14%)
Query: 471 DLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530
D + E + +D +L N+ + + G G+GK++L + + +
Sbjct: 93 DSLHELVEEQSRVDLLR---SYSLEPRNR----VLLVGPPGNGKTSLAEALAESMMVPLL 145
Query: 531 INAEASDIMQNRPPEAGKANPSLIRLMGSR-IVIISETN-----ENDEINAAKIKQMTGG 584
+ I A + + R +++ E D +IK++
Sbjct: 146 VVRYEGIIGSYLGETASRLKKVIDYAATRRCVLLFDEFETLGKERGDTHETGEIKRVVSS 205
Query: 585 DCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIV 629
M S + H + D A WRR+ +
Sbjct: 206 LLMQIDSL---------PSHVIVMAATNHSEL--LDRAVWRRFQL 239
>gi|21222404|ref|NP_628183.1| hypothetical protein SCO4001 [Streptomyces coelicolor A3(2)]
gi|13122165|emb|CAC32341.1| hypothetical protein 2SC10A7.05c [Streptomyces coelicolor A3(2)]
Length = 291
Score = 41.6 bits (96), Expect = 0.53, Method: Composition-based stats.
Identities = 27/113 (23%), Positives = 36/113 (31%), Gaps = 19/113 (16%)
Query: 51 ACGFGFVCGVGEQPLYAFDIDSK------DEKTANTFKDTFEILHGTPIVRIGQKPKILI 104
A G+G CG+ L D+D+K D TA + L P + P
Sbjct: 83 ATGYGIACGLPPHHLIGVDLDTKSAAAQTDSATALR-ELALRHLFTIPPTVVVLTPSGGR 141
Query: 105 PFRMNKE--GIKKKKTTESTQGHLDILGCGQYFV---------AYNIHPKTKK 146
+ + G +DI G G Y V AY I P T
Sbjct: 142 HLWLTGPPDHVVPNSAGRLAPG-IDIRGAGGYLVGPGSRTRHGAYTIAPGTSH 193
>gi|99082524|ref|YP_614678.1| oligopeptide/dipeptide ABC transporter, ATP-binding protein-like
[Ruegeria sp. TM1040]
gi|99038804|gb|ABF65416.1| Oligopeptide/dipeptide ABC transporter ATP-binding protein-like
protein [Ruegeria sp. TM1040]
Length = 627
Score = 41.6 bits (96), Expect = 0.53, Method: Composition-based stats.
Identities = 31/143 (21%), Positives = 50/143 (34%), Gaps = 13/143 (9%)
Query: 427 RFLGEQDGILD-----LETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEE 481
LG DG+ D L++G +P + ++ P EG+ +L + +
Sbjct: 260 NLLG--DGVRDALDPRLKSGALSRPMPTTMVRRTDPVPQPEGDGILSLCNLQTQFH---- 313
Query: 482 VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQN 541
+ D + VG L + I G GSGKS I + + +
Sbjct: 314 IKDRIYKAVGGVDLSVRPGECLGII-GESGSGKSVTALSIMGLVASPPGV-ITGGAVHYK 371
Query: 542 RPPEAGKANPSLIRLMGSRIVII 564
G +L RL G R+ I
Sbjct: 372 GEDLIGAPYETLRRLRGDRVAYI 394
>gi|319778340|ref|YP_004129253.1| toprim domain protein [Taylorella equigenitalis MCE9]
gi|317108364|gb|ADU91110.1| toprim domain protein [Taylorella equigenitalis MCE9]
Length = 311
Score = 41.6 bits (96), Expect = 0.53, Method: Composition-based stats.
Identities = 19/77 (24%), Positives = 28/77 (36%), Gaps = 2/77 (2%)
Query: 233 VMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFY 292
A+ E S G EI WSK+ S Y+E++ W + I + +
Sbjct: 2 GGAIKSEYGDS--GFEIWNGWSKRASNYEEKSAKSTWRSLKEGRINIASLFYEARKHGYK 59
Query: 293 HHGKLIPKGLLASRFSD 309
K LA R +D
Sbjct: 60 DINKTYSSQELAKRQAD 76
>gi|241645478|ref|XP_002411084.1| 26S proteasome regulatory complex, ATPase RPT6, putative [Ixodes
scapularis]
gi|215503714|gb|EEC13208.1| 26S proteasome regulatory complex, ATPase RPT6, putative [Ixodes
scapularis]
Length = 348
Score = 41.6 bits (96), Expect = 0.53, Method: Composition-based stats.
Identities = 29/145 (20%), Positives = 50/145 (34%), Gaps = 17/145 (11%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL---IRLMGSR 560
+ + G G+GK+ L + + + I S+++Q E + L R
Sbjct: 185 VLLYGPPGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPS 243
Query: 561 IVIISETNENDEINAAKIKQMTGGDC----MTARLNYGNTYSESPASFTPFIVPNKHLFV 616
I+ + E D I +++I +GGD L E+ + + N +
Sbjct: 244 IIFMDEI---DSIGSSRIDAGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATN---RI 297
Query: 617 RNPDDAWWR--RY-IVIPFDKPIAN 638
D A R R I F P
Sbjct: 298 DILDPALLRPGRIDRKIEFPPPNEE 322
>gi|123184615|ref|XP_001281143.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121835117|gb|EAX68213.1| hypothetical protein TVAG_513440 [Trichomonas vaginalis G3]
Length = 194
Score = 41.6 bits (96), Expect = 0.53, Method: Composition-based stats.
Identities = 31/189 (16%), Positives = 58/189 (30%), Gaps = 16/189 (8%)
Query: 560 RIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV 616
++++ +E D +N+ +K + Y + + + N
Sbjct: 2 KLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMK 61
Query: 617 RNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-I 675
D RRY+V+ +D + L T + I
Sbjct: 62 LESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTPNFYNHLFSYFMTLDISNFNPRQI 117
Query: 676 PEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIST 735
P + E + Y+ +ID+ + SL SY +Y ++ Y S
Sbjct: 118 PHTEERQTLLEANKS-VYELFIDETNFECLDER----SLYDSYKQYCQE---YGYMAASK 169
Query: 736 RTVTLNLKQ 744
RT N+K
Sbjct: 170 RTFLANVKN 178
>gi|123272713|ref|XP_001289813.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121861384|gb|EAX76883.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 211
Score = 41.6 bits (96), Expect = 0.54, Method: Composition-based stats.
Identities = 37/210 (17%), Positives = 65/210 (30%), Gaps = 19/210 (9%)
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGN 595
M N GK N S+ + +++ +E D +N+ +K + Y +
Sbjct: 1 MTNLENICGKFNSSIENMK---LIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKD 57
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
+ + N D RRY+V+ +D + L T
Sbjct: 58 QRVCENVANFIMVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTPNF 113
Query: 656 KKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
+ IP + E + Y+ +ID+ + SL
Sbjct: 114 YNHLFSYFMTLDISKFNPRQIPYTEERQTLLEANKS-VYELFIDETNFECLDER----SL 168
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLKQ 744
SY +Y ++ Y S RT N+K
Sbjct: 169 YDSYKQYCQE---YGYMAASKRTFLANVKN 195
>gi|123189466|ref|XP_001282067.1| hypothetical protein [Trichomonas vaginalis G3]
gi|123202877|ref|XP_001284192.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121838338|gb|EAX69137.1| conserved hypothetical protein [Trichomonas vaginalis G3]
gi|121845178|gb|EAX71262.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 211
Score = 41.6 bits (96), Expect = 0.54, Method: Composition-based stats.
Identities = 37/210 (17%), Positives = 65/210 (30%), Gaps = 19/210 (9%)
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGN 595
M N GK N S+ + +++ +E D +N+ +K + Y +
Sbjct: 1 MTNLENICGKFNSSIENMK---LIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKD 57
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
+ + N D RRY+V+ +D + L T
Sbjct: 58 QRVCENVANFIMVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTPNF 113
Query: 656 KKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
+ IP + E + Y+ +ID+ + SL
Sbjct: 114 YNHLFSYFMTLDISKFNPRQIPYTEERQTLLEANKS-VYELFIDETNFECLDER----SL 168
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLKQ 744
SY +Y ++ Y S RT N+K
Sbjct: 169 YDSYKQYCQE---YGYMAASKRTFLANVKN 195
>gi|23577821|ref|NP_703085.1| DNA helicase [Rachiplusia ou MNPV]
gi|23476466|gb|AAN28013.1| DNA helicase [Rachiplusia ou MNPV]
Length = 1221
Score = 41.6 bits (96), Expect = 0.54, Method: Composition-based stats.
Identities = 24/154 (15%), Positives = 59/154 (38%), Gaps = 9/154 (5%)
Query: 485 YFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544
+ + ++ I++ G GSGKS+ L+ Y++ D +
Sbjct: 894 MLMHFAASLAIPVDYGKKAIYMPGEPGSGKSSFFELL------DYLVLMHKFDDDNHSGE 947
Query: 545 EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604
+ + + + S++ I+E + + + K+ ++ + A++
Sbjct: 948 SNKETSDKEVSKLNSQLYTINELKQ---CSESYFKKHADSSKSDSKSRKYQGLLKYEANY 1004
Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN 638
IV NK L+V + DD R++++ + +
Sbjct: 1005 KMLIVNNKPLYVDDYDDGVQDRFLIVYTNHKFVD 1038
>gi|224460778|ref|YP_002635571.1| putative E1 [Equine papillomavirus 2]
gi|187938330|gb|ACD38209.1| putative E1 [Equine papillomavirus 2]
Length = 444
Score = 41.6 bits (96), Expect = 0.54, Method: Composition-based stats.
Identities = 23/171 (13%), Positives = 57/171 (33%), Gaps = 30/171 (17%)
Query: 494 LLGGNKAQRFIHIRGVGGSGKSTL-MNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS 552
+ G + + + G +GKS+ ++L+++ G K++
Sbjct: 258 FVKGVPKKNCMVLVGPPNTGKSSFAVSLLEFMNGKVL-------------FFPNSKSHFW 304
Query: 553 LIRLMGSRIVIISETNENDEIN--AAKIKQMTGGDCMTARLNYGNTYSES-PASFTPFIV 609
L+ L +R+ ++ + + ++ G+ ++ + P +
Sbjct: 305 LMPLADTRMALLDDAT-GPVWDFFDHYMRNAMDGNPISVDQKHKQPLQLRCPP---LLMT 360
Query: 610 PNKHLFVRNPDDAWW--RRYIVIPFDKPIANRDASFAQKLETKYTLEAKKW 658
N + + W+ R IV+ F P + + + L K W
Sbjct: 361 TN--VDISQESKYWYLHSRMIVLRFPNPFP-----LDENQQPVFELTVKNW 404
>gi|167908939|ref|ZP_02496030.1| hypothetical protein Bpse112_00480 [Burkholderia pseudomallei 112]
Length = 232
Score = 41.6 bits (96), Expect = 0.54, Method: Composition-based stats.
Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 234 MAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTF 272
MA+ E +G + WS+ Y+ ++ W +F
Sbjct: 1 MALKAEF--GEEGFTLWNEWSQGAQNYNGKDARDVWKSF 37
>gi|123372760|ref|XP_001297536.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121877734|gb|EAX84606.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 194
Score = 41.6 bits (96), Expect = 0.54, Method: Composition-based stats.
Identities = 31/188 (16%), Positives = 60/188 (31%), Gaps = 16/188 (8%)
Query: 560 RIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV 616
++++ +E D +N+ +K + Y + + + N
Sbjct: 2 KLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNVVPMK 61
Query: 617 RNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-I 675
D RRY+V+ +D + L T + + I
Sbjct: 62 LESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQI 117
Query: 676 PEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIST 735
P + E + Y+ +ID+ + + SL SY +Y ++ Y S
Sbjct: 118 PHTEERQTLLEANKS-VYELFIDETNFVSLDER----SLYDSYKQYCQE---YGYMAASK 169
Query: 736 RTVTLNLK 743
RT N+K
Sbjct: 170 RTFLANVK 177
>gi|297200823|ref|ZP_06918220.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Streptomyces
sviceus ATCC 29083]
gi|297147743|gb|EFH28715.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Streptomyces
sviceus ATCC 29083]
Length = 264
Score = 41.6 bits (96), Expect = 0.55, Method: Composition-based stats.
Identities = 23/110 (20%), Positives = 31/110 (28%), Gaps = 7/110 (6%)
Query: 51 ACGFGFVCGVGEQPLYAFDIDSK---DEKTANTFKDTFEILHGTPIVRIGQKPKILIPFR 107
A G+G CG+ L D+D+K D A + L P + P
Sbjct: 82 ATGYGIACGLPPHHLIGVDLDTKSGTDSSAALR-ELALRHLFTIPDTVVVLTPSGGRHLW 140
Query: 108 MNKE--GIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPH 155
+ G +DI G G Y V T H
Sbjct: 141 LTGPPDAAVPNSAGRLAPG-IDIRGAGGYLVGPGSRTDHGTYTTAPGTAH 189
>gi|254555204|ref|YP_003061621.1| prophage Lp3 protein 7 [Lactobacillus plantarum JDM1]
gi|254044131|gb|ACT60924.1| prophage Lp3 protein 7 [Lactobacillus plantarum JDM1]
Length = 266
Score = 41.6 bits (96), Expect = 0.55, Method: Composition-based stats.
Identities = 29/165 (17%), Positives = 52/165 (31%), Gaps = 17/165 (10%)
Query: 8 EQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEK------IDKLPACGFGFVCGVG 61
++A + G+ + PL K+P + G Q +S++ K PA G +
Sbjct: 8 DKAIELAQQGYAVYPLIENTKKPPK-GVAGYQAATSDQNTIFAWFKKHPAYNLGLRLDL- 65
Query: 62 EQPLYAFDIDSKDEKTANTFKDTFEILHGTPI---VRIGQKPKILIPFRMNKEGIKKKKT 118
L DID D G + I + + + + G K +
Sbjct: 66 -SDLLVVDIDMHDPTKNGRASLAQLFKQGQTLPNDTYIERTANGGVHYFLKYAGAK-ARK 123
Query: 119 TESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTP 163
+ G +D+L I+ K Y ++ P
Sbjct: 124 IDVWPG-IDLLSDFTVIAPSEIN---GKPYQAIDGRTLADIKPAP 164
>gi|325525457|gb|EGD03275.1| inner membrane protein [Burkholderia sp. TJI49]
Length = 327
Score = 41.6 bits (96), Expect = 0.55, Method: Composition-based stats.
Identities = 9/39 (23%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 234 MAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTF 272
MA+ E +G + WS+ Y ++ W +F
Sbjct: 1 MALKAEF--GEEGFALWNEWSQGAQNYKGKDARDVWKSF 37
>gi|123297526|ref|XP_001290853.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121864049|gb|EAX77923.1| hypothetical protein TVAG_583510 [Trichomonas vaginalis G3]
Length = 211
Score = 41.6 bits (96), Expect = 0.55, Method: Composition-based stats.
Identities = 36/210 (17%), Positives = 64/210 (30%), Gaps = 19/210 (9%)
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGN 595
M N GK N S+ + +++ +E D +N+ +K + Y +
Sbjct: 1 MTNLENICGKFNSSIENMK---LIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKD 57
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
+ + N D RRY+V+ +D + L T
Sbjct: 58 QRVCENVANFIMVSNNAVPMKLESSD---RRYVVVR-TSEAHMQDTEYFDDLAETLTPNF 113
Query: 656 KKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
+ IP + E + Y+ +ID+ + SL
Sbjct: 114 YNHLFSYFMTLDISKFNPRQIPHTEERQTLLEANKS-VYELFIDETNFECLDER----SL 168
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLKQ 744
Y +Y ++ Y S RT N+K
Sbjct: 169 YDEYKQYCQE---YGYMTASKRTFLANVKN 195
>gi|123242589|ref|XP_001288281.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121857219|gb|EAX75351.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 211
Score = 41.6 bits (96), Expect = 0.55, Method: Composition-based stats.
Identities = 37/209 (17%), Positives = 66/209 (31%), Gaps = 19/209 (9%)
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGN 595
M N GK N S+ + +++ +E D +N+ +K + Y +
Sbjct: 1 MTNLENICGKFNSSIENMK---LIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKD 57
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
+ + N D RRY+V+ +D + L T +
Sbjct: 58 QRVCENVANFVMVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTPDF 113
Query: 656 KKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
+ IP + E + Y+ +ID+ + SL
Sbjct: 114 YNHLFSYFMTLDISKFNPRQIPHTEERQTLLEANKS-VYELFIDETNFECLDER----SL 168
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLK 743
SY +Y ++ Y S RT N+K
Sbjct: 169 YDSYKQYCQE---YGYMAASKRTFLANVK 194
>gi|157137247|ref|XP_001663955.1| rfx5 [Aedes aegypti]
gi|108869758|gb|EAT33983.1| rfx5 [Aedes aegypti]
Length = 415
Score = 41.6 bits (96), Expect = 0.55, Method: Composition-based stats.
Identities = 23/149 (15%), Positives = 47/149 (31%), Gaps = 15/149 (10%)
Query: 626 RYIVIPFDKPI----ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLK 681
R I F+ I + +K+ E +L+ + G P +
Sbjct: 171 RIQQI-FENAIGDTSKKQIVEILEKISILRPPERLLLYLR-----MPGGYPETDPLRQSQ 224
Query: 682 AKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLN 741
R + W+ + N+ + Y+ + E+ D K +ST
Sbjct: 225 NPLGTRSEINHTINWVRSHLEHDPNVSIPKQEVYDDYTAFCER---IDIKPLSTADFGKV 281
Query: 742 LKQKGFIGGIKREKIEKEWKSKRIIKGLK 770
+KQ GI+ ++ S+ ++
Sbjct: 282 MKQ--VFPGIRPRRLGTRGHSRYCYAAMR 308
>gi|78042824|ref|YP_360978.1| AAA family ATPase [Carboxydothermus hydrogenoformans Z-2901]
gi|77994939|gb|ABB13838.1| ATPase, AAA family [Carboxydothermus hydrogenoformans Z-2901]
Length = 411
Score = 41.6 bits (96), Expect = 0.55, Method: Composition-based stats.
Identities = 33/167 (19%), Positives = 53/167 (31%), Gaps = 14/167 (8%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFG-NQYVINAEASDIMQNRPPEAGKANPSL-IRLMGSRI 561
I + G G+GK+ + A+G +V+NA A A K L R
Sbjct: 196 IILYGPPGNGKTNFARTVAQAYGLPFFVVNASAIISSGQLVGAAEKTLLELFANAKALRP 255
Query: 562 VII--SETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNP 619
II E + + A+ + L + + + N +
Sbjct: 256 AIIFFDEIDAIAKKRRAETLNSASDILINILLTQMDGFEKV-DDVLLIAATN---RIDIL 311
Query: 620 DDAWWR--RY---IVIPFDKPIANRDASFAQKLETKYTLEAKKWFLK 661
D+A R R+ I+IP + R F L K L+
Sbjct: 312 DEAILRPGRFDQKILIP-NPDKEARKKYFDLFLGQKIEKGIDAELLE 357
>gi|190893408|ref|YP_001979950.1| hypothetical protein RHECIAT_CH0003834 [Rhizobium etli CIAT 652]
gi|190698687|gb|ACE92772.1| hypothetical protein RHECIAT_CH0003834 [Rhizobium etli CIAT 652]
Length = 811
Score = 41.6 bits (96), Expect = 0.56, Method: Composition-based stats.
Identities = 21/82 (25%), Positives = 30/82 (36%), Gaps = 7/82 (8%)
Query: 470 LDLVSGYFESEEVMDYFTRCVGMALLGGNKA----QRFIHIRGVGGSGKSTLMN-LIKYA 524
L E +F R + L + GV G+G+ +L N L+
Sbjct: 459 LRFFQHLLPDERERAWFLRWLAYKL--RRPEIPGPGVVMVAHGVHGTGRGSLTNALLPAL 516
Query: 525 FGNQYVINAEASDIMQNRPPEA 546
FG+QYV E SD+ A
Sbjct: 517 FGSQYVKKVELSDLTGRDGQGA 538
>gi|154318948|ref|XP_001558792.1| hypothetical protein BC1G_02863 [Botryotinia fuckeliana B05.10]
gi|150857993|gb|EDN33185.1| hypothetical protein BC1G_02863 [Botryotinia fuckeliana B05.10]
Length = 418
Score = 41.6 bits (96), Expect = 0.56, Method: Composition-based stats.
Identities = 41/212 (19%), Positives = 72/212 (33%), Gaps = 37/212 (17%)
Query: 441 GQKVKPTKELYIT----KSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLG 496
G+ +P KE I V E D + G +++++ V L
Sbjct: 80 GKPRRPRKEDLILDQYENQIAMEVVAPEDIPVGFDDIGGL---DDIIEELKESVIYPLTM 136
Query: 497 GNKAQRF---------IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAG 547
+ + + G G GK+ L + + G + IN S + + ++
Sbjct: 137 PHLYSHSSPLLSAPSGVLLYGPPGCGKTMLAKALAHESGACF-INLHISTLTEKWYGDSN 195
Query: 548 ---KANPSLIRLMGSRIVIISETN-------ENDEINAAKIKQ--MTGGDCMTARLNYGN 595
+A SL R + IV I E + + + +K MT D +T+ G
Sbjct: 196 KLVRAVFSLARKLQPSIVFIDEIDAVLGQRRSGEHEASGMVKAEFMTLWDGLTSSNKSG- 254
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627
PA N +++ D+A RR
Sbjct: 255 ----LPARIMILGATN---RIQDIDEAILRRM 279
>gi|123310861|ref|XP_001291636.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121865969|gb|EAX78706.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 194
Score = 41.6 bits (96), Expect = 0.56, Method: Composition-based stats.
Identities = 30/188 (15%), Positives = 59/188 (31%), Gaps = 16/188 (8%)
Query: 560 RIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV 616
++++ +E D +N+ +K + Y + + + N
Sbjct: 2 KLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMK 61
Query: 617 RNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-I 675
D RRY+V+ +D + L T + + I
Sbjct: 62 LESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQI 117
Query: 676 PEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIST 735
P + E + Y+ +ID+ + + SL Y +Y ++ Y S
Sbjct: 118 PHTEERQTLLEANKS-VYELFIDETDFVSLDEK----SLYDEYKQYCQE---YGYMAASK 169
Query: 736 RTVTLNLK 743
RT N+K
Sbjct: 170 RTFLANVK 177
>gi|123196200|ref|XP_001283482.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121843040|gb|EAX70552.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 194
Score = 41.6 bits (96), Expect = 0.56, Method: Composition-based stats.
Identities = 30/189 (15%), Positives = 59/189 (31%), Gaps = 16/189 (8%)
Query: 560 RIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV 616
++++ +E D +N+ +K + Y + + + N
Sbjct: 2 KLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVPNNAVPMK 61
Query: 617 RNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-I 675
D RRY+V+ +D + L T + I
Sbjct: 62 LESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTPNFYNHLFSYFMTLDISKFNPRQI 117
Query: 676 PEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIST 735
P + E + Y+ ++D+ + + SL SY +Y ++ Y S
Sbjct: 118 PYTEERQTLLEANKS-VYELFVDETDFVSLDER----SLYDSYKQYCQE---YGYMAASK 169
Query: 736 RTVTLNLKQ 744
RT N+K
Sbjct: 170 RTFLANVKN 178
>gi|194289025|ref|YP_002004932.1| DNA primase [Cupriavidus taiwanensis LMG 19424]
gi|193222860|emb|CAQ68863.1| putative DnaG-type primase; topoisomerase-primase (TOprIM)
nucleotidyl transferase/hydrolase domain; similar to
bacteriophage phiCTX_orf37 [Cupriavidus taiwanensis LMG
19424]
Length = 903
Score = 41.6 bits (96), Expect = 0.58, Method: Composition-based stats.
Identities = 38/200 (19%), Positives = 74/200 (37%), Gaps = 19/200 (9%)
Query: 467 QEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKA------QRFIHI--RGVGGSGKSTLM 518
++L+L+ F ++ ++ +G + + F + G G+GKSTL+
Sbjct: 511 HDWLELIWRAFGAKAIVA-LAFWLGSLFAEQIREGEGVKQKSFPFLEVVGEPGAGKSTLI 569
Query: 519 NLIKYAFG--NQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAA 576
+ G + + S + A +N ++ + G R + + +
Sbjct: 570 EFLWKLCGRRDYEGFDPSKSSLAARARNFAQVSNLPVVLIEGDRG---EDGAKVKGFDWN 626
Query: 577 KIKQMTGGDCMTAR--LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK 634
++K G AR N GN E P I N + N +A +R + + FD+
Sbjct: 627 ELKTAYNGRSTRARGVKNAGNETYEPPFRGAVVISQNAEV---NASEAVLQRIVHLYFDR 683
Query: 635 PIANRDASFAQKLETKYTLE 654
N D A + + +E
Sbjct: 684 AGQNPDTFAAARALEQMPVE 703
>gi|123315163|ref|XP_001292021.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121866944|gb|EAX79091.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 194
Score = 41.6 bits (96), Expect = 0.59, Method: Composition-based stats.
Identities = 34/189 (17%), Positives = 64/189 (33%), Gaps = 18/189 (9%)
Query: 560 RIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGN-TYSESPASFTPFIVPNKHLF 615
++++ +E D +N+ +K + Y + SE+ A+F + N
Sbjct: 2 KLIVCNELQSIDTTKVLNSNALKSLITDKVGVVERKYKDQRVSENVANF-IMVSNNAVPM 60
Query: 616 VRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD- 674
D RRY+V+ +D + L T + +
Sbjct: 61 KLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQ 116
Query: 675 IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIS 734
IP + E + Y+ +ID+ + + SL Y +Y ++ Y S
Sbjct: 117 IPHTEERQTLLEANKS-VYELFIDETDFVSLDER----SLYDEYKQYCQE---YGYMAAS 168
Query: 735 TRTVTLNLK 743
RT N+K
Sbjct: 169 KRTFLANVK 177
>gi|123197412|ref|XP_001283786.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121843948|gb|EAX70856.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 211
Score = 41.6 bits (96), Expect = 0.59, Method: Composition-based stats.
Identities = 37/209 (17%), Positives = 67/209 (32%), Gaps = 19/209 (9%)
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGN 595
M N GK N S+ + +++ +E D +N+ +K + Y +
Sbjct: 1 MTNLENICGKFNSSIENMK---LIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKD 57
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
+ + N D RRY+V+ +D + L T +
Sbjct: 58 QRVCENVANFIMVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDF 113
Query: 656 KKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
+ IP + E + Y+ +ID+ + + SL
Sbjct: 114 YNHLFSYFMTLDISKFNPRQIPHTEERQTLLEANKS-VYELFIDET----DFECLDERSL 168
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLK 743
SY +Y ++ Y S RT N+K
Sbjct: 169 YDSYKQYCQE---YGYMAASKRTFLANVK 194
>gi|2245467|gb|AAC48284.1| DUG [Drosophila melanogaster]
Length = 405
Score = 41.6 bits (96), Expect = 0.59, Method: Composition-based stats.
Identities = 53/319 (16%), Positives = 95/319 (29%), Gaps = 38/319 (11%)
Query: 348 LDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQ 407
+ KI + + ++ E N K + V E K +
Sbjct: 24 IQKIEELQLVVAEKHQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKK 83
Query: 408 SLEAGSIFSITSDLLDSSSRFLG--EQDGILDLE----TGQKVKPTKELYITKSTGTPFV 461
L + LD + + + + L T K+ P K + V
Sbjct: 84 VLVKVHPEGKSVVDLDKNID-INDVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKV 142
Query: 462 EGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGVGGSGKS 515
+ L E +EV++ +G + + + G G+GK+
Sbjct: 143 PDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALG------IAQPKGVLLYGPPGTGKT 196
Query: 516 TLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL---IRLMGSRIVIISETNENDE 572
L + + I S+++Q E + L R I+ + E D
Sbjct: 197 LLARAVAH-HTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEI---DS 252
Query: 573 INAAKIKQMTGGDC----MTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR--R 626
I +++I+ +GGD L E+ + + N + D A R R
Sbjct: 253 IGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATN---RIDILDPALLRPGR 309
Query: 627 Y-IVIPFDKPIANRDASFA 644
I F P N +A
Sbjct: 310 IDRKIEF--PPPNEEARLD 326
>gi|81428209|ref|YP_395209.1| hypothetical protein LSA0594 [Lactobacillus sakei subsp. sakei 23K]
gi|78609851|emb|CAI54898.1| Hypothetical prophage lsa1protein [Lactobacillus sakei subsp. sakei
23K]
Length = 266
Score = 41.6 bits (96), Expect = 0.59, Method: Composition-based stats.
Identities = 34/230 (14%), Positives = 64/230 (27%), Gaps = 15/230 (6%)
Query: 1 MPVMQWKEQAKQAIHNGFKLIPLRLGDKRP-QRLGKWEEQLLSSEKIDKLPACGFGFVCG 59
MPV+ A G ++ PL K P + +E + E++ G
Sbjct: 1 MPVLL--NDAMSYAKRGLQVFPLTPNSKIPLKGTQGSKEATSTPEQVKTWWTNNPDCNIG 58
Query: 60 VGEQPLYAFDID---SKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKK 116
V + DID D ++ + + + P + +
Sbjct: 59 VATRGFIVLDIDINHVDDADGYHSLEVLEDTYNKLPETLTVKTASGGRHLYFKLPEGVEL 118
Query: 117 KTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTP------LLSEEDV 170
+ +DI +V YT+ + + D P +L +
Sbjct: 119 PQKIAFLNGVDIKANPNNYVLLPPSRINGDAYTFEN---KRPMADLPEWLTGFILKRNKI 175
Query: 171 EYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEE 220
+ + F + I R T +IT L +G +
Sbjct: 176 KRTSRAFSANKRYRSHVTELIETLTLGFETGRRNDTAAKITGQLLAYGVD 225
>gi|159146228|gb|ABW90577.1| virulence-associated protein [Bacteriophage APSE-2]
Length = 385
Score = 41.2 bits (95), Expect = 0.60, Method: Composition-based stats.
Identities = 20/104 (19%), Positives = 34/104 (32%), Gaps = 10/104 (9%)
Query: 206 TNREITAFLSCFGEEFYNGSHDEWIPVV--MAVHHETRGSSKGKEIARRWSKQGSTYDEE 263
T ++ + L ++ W+ + +A +TR + K + WS + D E
Sbjct: 204 TFEDLRSALWYPKILNQAENYPSWVDMGNRLAWFKDTRFEDEAKTMWLDWSSAAAKGDIE 263
Query: 264 NFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRF 307
KW + G SL G + P A R
Sbjct: 264 AAEAKWAELRADRTG-----YQAIFSLAQKAGWVNPG---AERL 299
>gi|291543117|emb|CBL16227.1| Predicted P-loop ATPase and inactivated derivatives [Ruminococcus
bromii L2-63]
Length = 445
Score = 41.2 bits (95), Expect = 0.61, Method: Composition-based stats.
Identities = 40/245 (16%), Positives = 69/245 (28%), Gaps = 28/245 (11%)
Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539
E + + + A G K + + + G G+GKST L+
Sbjct: 143 EALKLFLLGAISRAFQPGCKFEIMLCLVGGQGAGKSTFFRLLA----------VRDEWFS 192
Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLN--YGNTY 597
+ +L G I+ +SE + A K + +R Y Y
Sbjct: 193 DDLRKLDDD--NVYRKLQGHWIIEMSEM-----MATANAKSIEEIKSFLSRQKEVYKIPY 245
Query: 598 SESP---ASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLE 654
P F + L D + RR+ IP + +
Sbjct: 246 ETHPADRPRQCVFGGTSNALDFLPLDRSGNRRF--IPVMVYPEQAEVHILEDEAASRAYI 303
Query: 655 AKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQG---TDTYQAWIDDCCDIGENLWEES 711
+ W + ++ Y S + + +E ++ DT I D S
Sbjct: 304 EQMWA-EAMEIYRSGRFKLAFSPDMQRYLKEHQRDFMPEDTKAGMIQAYLDKYTGETVCS 362
Query: 712 HSLAK 716
L K
Sbjct: 363 KQLYK 367
>gi|123225789|ref|XP_001285793.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121850041|gb|EAX72863.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 194
Score = 41.2 bits (95), Expect = 0.61, Method: Composition-based stats.
Identities = 31/188 (16%), Positives = 60/188 (31%), Gaps = 16/188 (8%)
Query: 560 RIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV 616
++++ +E D +N+ +K + Y + + + N
Sbjct: 2 KLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNVVPMK 61
Query: 617 RNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-I 675
D RRY+V+ +D + L T + + I
Sbjct: 62 LESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQI 117
Query: 676 PEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIST 735
P + E + Y+ +ID+ + + SL SY +Y ++ Y S
Sbjct: 118 PHTEERQTLLEANKS-VYELFIDETDFVSLDER----SLYDSYKQYCQE---YGYMAASK 169
Query: 736 RTVTLNLK 743
RT N+K
Sbjct: 170 RTFLANVK 177
>gi|41057570|ref|NP_958099.1| NS1 [Mythimna loreyi densovirus]
gi|39726203|gb|AAR30037.1| NS1 [Mythimna loreyi densovirus]
Length = 545
Score = 41.2 bits (95), Expect = 0.61, Method: Composition-based stats.
Identities = 30/196 (15%), Positives = 64/196 (32%), Gaps = 23/196 (11%)
Query: 455 STGTPFVEGEPSQEFLDLVSGY-FESEE--VMDYFTRCVGMALLGGNKAQRFIHIRGVGG 511
+ + E S +D + Y +E ++++ T V L +
Sbjct: 352 ISSMKYDNLEGSLNIIDELLKYQCNDDEGLIVEFLTNLV-NVLDRRVPKLNAFLVMSPPS 410
Query: 512 SGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKAN-PSLIRLMGSRIVIISETNEN 570
+GK+ ++I + + +A + N + R+++ +E N
Sbjct: 411 AGKNFFFDMIFGLL------------LSYGQLGQANRHNLFAFQEAPNKRVLLWNEPNYE 458
Query: 571 DEINAAKIKQMTGGDCMTARLN-YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIV 629
+ IK M GGD T R+ + + + + N F+ A+ R I
Sbjct: 459 SSL-TDTIKMMFGGDPYTVRVKNRMDAHVKRTP--VIILTNNTVPFMYET--AFADRIIQ 513
Query: 630 IPFDKPIANRDASFAQ 645
++ +D
Sbjct: 514 YKWNAAPFLKDYELKP 529
>gi|115712886|ref|XP_784151.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
gi|115942106|ref|XP_001184577.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus]
Length = 401
Score = 41.2 bits (95), Expect = 0.62, Method: Composition-based stats.
Identities = 31/151 (20%), Positives = 52/151 (34%), Gaps = 19/151 (12%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL---IRLMGSR 560
+ + G G+GK+ L + + I S+++Q E + L R
Sbjct: 181 VLLYGPPGTGKTLLARAVAH-HTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPS 239
Query: 561 IVIISETNENDEINAAKIKQMTGGDC----MTARLNYGNTYSESPASFTPFIVPNKHLFV 616
I+ + E D I + +I+ +GGD L E+ + + N +
Sbjct: 240 IIFMDEI---DSIGSTRIEGSSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATN---RI 293
Query: 617 RNPDDAWWR--RY-IVIPFDKPIANRDASFA 644
D A R R I F P N +A
Sbjct: 294 DILDSALLRPGRIDRKIEF--PPPNEEARLD 322
>gi|123350206|ref|XP_001295249.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121873925|gb|EAX82319.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 211
Score = 41.2 bits (95), Expect = 0.63, Method: Composition-based stats.
Identities = 36/209 (17%), Positives = 66/209 (31%), Gaps = 19/209 (9%)
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGN 595
M N GK N S+ + +++ +E D +N+ +K + Y +
Sbjct: 1 MTNLENICGKFNSSIENMK---LIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKD 57
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
+ + N D RRY+V+ +D + L T +
Sbjct: 58 QRVCENVANFIMVSNNVVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDF 113
Query: 656 KKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
+ IP + E + Y+ +ID+ + + SL
Sbjct: 114 YNHLFSYFMTLDISKFNPRQIPHTEERQTLLEANKS-VYELFIDETDFVSLDER----SL 168
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLK 743
Y +Y ++ Y S RT N+K
Sbjct: 169 YDEYKQYCQE---YGYMAASKRTFLANVK 194
>gi|213409103|ref|XP_002175322.1| mitochondrial outer membrane ATPase Msp1 [Schizosaccharomyces
japonicus yFS275]
gi|212003369|gb|EEB09029.1| mitochondrial outer membrane ATPase Msp1 [Schizosaccharomyces
japonicus yFS275]
Length = 350
Score = 41.2 bits (95), Expect = 0.63, Method: Composition-based stats.
Identities = 40/224 (17%), Positives = 70/224 (31%), Gaps = 44/224 (19%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSR--- 560
+ + G G GK+ L + G + IN + E+ K +L RL
Sbjct: 130 LLLYGPPGCGKTMLAKALAKQSGATF-INVNVGLLTDKWFGESNKLVEALFRLAHKLEPT 188
Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESP-----ASFTPFIVPNKHLF 615
++ I E + + ++Q D S S +
Sbjct: 189 VIFIDEID-------SFLRQRQSTDHEAMAQLKAEFMSLWDGLLTGQSRVVVLGATN--R 239
Query: 616 VRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLE-AKKWFLKGVKAYISKGLDVD 674
+++ D+A RR +F KL + FLKG+ + + D+
Sbjct: 240 IQDIDEAILRRM------------PKTFHIKLPDSRQRARLLQLFLKGIS--LDQNFDI- 284
Query: 675 IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSY 718
E +KA E ++I + C L L + Y
Sbjct: 285 --EAVVKATEG------LSGSYIKETCR--SALARVRRELFRQY 318
>gi|6677731|ref|NP_033082.1| DNA-binding protein RFX2 isoform 2 [Mus musculus]
gi|452420|emb|CAA53703.1| DNA binding protein RFX2 [Mus musculus]
gi|13435554|gb|AAH04654.1| Regulatory factor X, 2 (influences HLA class II expression) [Mus
musculus]
gi|148706259|gb|EDL38206.1| regulatory factor X, 2 (influences HLA class II expression),
isoform CRA_b [Mus musculus]
Length = 692
Score = 41.2 bits (95), Expect = 0.65, Method: Composition-based stats.
Identities = 19/133 (14%), Positives = 50/133 (37%), Gaps = 11/133 (8%)
Query: 659 FLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSY 718
+ G AY+ G +D L + + W+ D + E + SL Y
Sbjct: 139 IVSGAGAYLIHG-GMDGTRHSLAHTA---RSSPATLQWLLDNYETAEGVSLPRSSLYNHY 194
Query: 719 SEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPA--FE 776
+ ++ + + ++ + + + G++ ++ SK G++LKP
Sbjct: 195 LRHCQE---HKLEPVNAASFGKLI--RSVFMGLRTRRLGTRGNSKYHYYGIRLKPDSPLN 249
Query: 777 SVDDNSNIIDFKR 789
+ +++ + ++
Sbjct: 250 RLQEDTQYMAMRQ 262
>gi|159146232|gb|ABW90579.1| virulence-associated protein [Bacteriophage APSE-2]
Length = 385
Score = 41.2 bits (95), Expect = 0.66, Method: Composition-based stats.
Identities = 20/104 (19%), Positives = 34/104 (32%), Gaps = 10/104 (9%)
Query: 206 TNREITAFLSCFGEEFYNGSHDEWIPVV--MAVHHETRGSSKGKEIARRWSKQGSTYDEE 263
T ++ + L ++ W+ + +A +TR + K + WS + D E
Sbjct: 204 TFEDLRSALWYPKILNQAENYPSWVDMGNRLAWFKDTRFEDEAKTMWLDWSSAAAKGDIE 263
Query: 264 NFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRF 307
KW + G SL G + P A R
Sbjct: 264 AAEAKWAELRADRTG-----YQAIFSLAQKAGWVNPG---AERL 299
>gi|307546784|ref|YP_003899263.1| hypothetical protein HELO_4194 [Halomonas elongata DSM 2581]
gi|307218808|emb|CBV44078.1| hypothetical protein HELO_4194 [Halomonas elongata DSM 2581]
Length = 485
Score = 41.2 bits (95), Expect = 0.66, Method: Composition-based stats.
Identities = 38/288 (13%), Positives = 84/288 (29%), Gaps = 25/288 (8%)
Query: 464 EPSQEFLDLVSGYFE-SEEVMDYFTRCVGMALL-GGNKAQRFIHIRGVGGSGKSTLMN-L 520
+ L V +E + + + + L G K + + G G+GKS L +
Sbjct: 153 AGCERILGHVWRLCGYRQEEFFWLLKWMALPLQKPGTKMATAVLVHGSEGTGKSLLFEGI 212
Query: 521 IKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQ 580
+K +G +Y I + + + +L +V +E +K
Sbjct: 213 LKRIYG-EYGITIGQAQLESQFTGWQSRRLFALAE----EVVSRAEKAHYK----GVLKH 263
Query: 581 MTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD 640
+ G+ + SE F+ + + D RRY V+ +
Sbjct: 264 VVTGEELQINEKNMPLRSERNHVNFVFLSNSTVPLELDLGD---RRYFVLHVEDVPP--- 317
Query: 641 ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGT-DTYQAWIDD 699
+ + L + + F + + AK+ + + ++ +
Sbjct: 318 PEYFEALAEEIDQGGVECFYRYLLDLDLADYKPHTKPPLSDAKQRLIDSSLSPARFFVHE 377
Query: 700 CCDIG---ENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQ 744
L K++ + E + K R + +
Sbjct: 378 WRAGDLGLPYGVVAVADLWKAFLRWCENTNEFKTK---QRWFCDEVAR 422
>gi|154411914|ref|XP_001578991.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121913193|gb|EAY18005.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 194
Score = 41.2 bits (95), Expect = 0.66, Method: Composition-based stats.
Identities = 31/188 (16%), Positives = 60/188 (31%), Gaps = 16/188 (8%)
Query: 560 RIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV 616
++++ +E D +N+ +K + Y + + + N
Sbjct: 2 KLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMK 61
Query: 617 RNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-I 675
D RRY+V+ +D + L T + + I
Sbjct: 62 LESSD---RRYVVVR-TSEAHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQI 117
Query: 676 PEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIST 735
P + E + Y+ +ID+ + + SL SY +Y ++ Y S
Sbjct: 118 PHTEERQTLLEANKS-VYELFIDET----DFECLDERSLYDSYKQYCQE---YGYMTASK 169
Query: 736 RTVTLNLK 743
RT N+K
Sbjct: 170 RTFLANVK 177
>gi|291295369|ref|YP_003506767.1| SMC domain-containing protein [Meiothermus ruber DSM 1279]
gi|290470328|gb|ADD27747.1| SMC domain protein [Meiothermus ruber DSM 1279]
Length = 906
Score = 41.2 bits (95), Expect = 0.67, Method: Composition-based stats.
Identities = 37/161 (22%), Positives = 56/161 (34%), Gaps = 23/161 (14%)
Query: 503 FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGS--- 559
I G GSGKSTL++ I YA + +S + + P+A A L MG
Sbjct: 28 LFAITGPTGSGKSTLLDAITYAL-YKATPRIGSSGLKDLKHPQAESAKVELTFAMGEQVW 86
Query: 560 RIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNP 619
R+V + + N + PAS + K +
Sbjct: 87 RVVRVVGKESQSRL----------------EYLQQNQWKTHPASERVRELDAKLAEILGM 130
Query: 620 DDAWWRRYIVIP---FDKPIANRDASFAQKLETKYTLEAKK 657
D + R I++P FD + + L Y LE+ K
Sbjct: 131 DYETFTRAILLPQGQFDLFLRGSPKERRETLIKLYGLESLK 171
>gi|159146222|gb|ABW90574.1| virulence-associated protein [Bacteriophage APSE-2]
gi|159146224|gb|ABW90575.1| virulence-associated protein [Bacteriophage APSE-2]
gi|159146226|gb|ABW90576.1| virulence-associated protein [Bacteriophage APSE-2]
Length = 385
Score = 41.2 bits (95), Expect = 0.67, Method: Composition-based stats.
Identities = 20/104 (19%), Positives = 34/104 (32%), Gaps = 10/104 (9%)
Query: 206 TNREITAFLSCFGEEFYNGSHDEWIPVV--MAVHHETRGSSKGKEIARRWSKQGSTYDEE 263
T ++ + L ++ W+ + +A +TR + K + WS + D E
Sbjct: 204 TFEDLRSALWYPKILNQAENYPSWVDMGNRLAWFKDTRFEDEAKTMWLDWSSAAAKGDIE 263
Query: 264 NFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRF 307
KW + G SL G + P A R
Sbjct: 264 AAEAKWAELRADRTG-----YQAIFSLAQKAGWVNPG---AERL 299
>gi|323508048|emb|CBQ67919.1| probable MSP1-intra-mitochondrial sorting protein [Sporisorium
reilianum]
Length = 399
Score = 41.2 bits (95), Expect = 0.67, Method: Composition-based stats.
Identities = 28/127 (22%), Positives = 43/127 (33%), Gaps = 8/127 (6%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGK---ANPSLIRLMGSR 560
+ + G G+GK+ L + G + IN S + E+ K A SL R +
Sbjct: 124 VLLYGPPGTGKTMLAKALAKESGATF-INMHVSTLTNKWFGESNKLVAALFSLARKLQPS 182
Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620
I+ I E + A ++TG M A S + + D
Sbjct: 183 IIFIDEIDSFLRERATGDHEVTG--MMKAEFMTMWDGLTSSTDRIMVLGATNRPN--DID 238
Query: 621 DAWWRRY 627
A RR
Sbjct: 239 SAILRRL 245
>gi|332374604|gb|AEE62443.1| unknown [Dendroctonus ponderosae]
Length = 405
Score = 41.2 bits (95), Expect = 0.68, Method: Composition-based stats.
Identities = 31/151 (20%), Positives = 53/151 (35%), Gaps = 19/151 (12%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL---IRLMGSR 560
+ + G G+GK+ L + + I S+++Q E + L R
Sbjct: 185 VLLYGPPGTGKTLLARAVAH-HTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPS 243
Query: 561 IVIISETNENDEINAAKIKQMTGGDC----MTARLNYGNTYSESPASFTPFIVPNKHLFV 616
I+ + E D I +++I+ +GGD L E+ + + N +
Sbjct: 244 IIFMDEI---DSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATN---RI 297
Query: 617 RNPDDAWWR--RY-IVIPFDKPIANRDASFA 644
D A R R I F P N +A
Sbjct: 298 DILDPALLRPGRIDRKIEF--PPPNEEARLD 326
>gi|332030480|gb|EGI70168.1| 26S protease regulatory subunit 8 [Acromyrmex echinatior]
Length = 427
Score = 41.2 bits (95), Expect = 0.68, Method: Composition-based stats.
Identities = 31/151 (20%), Positives = 53/151 (35%), Gaps = 19/151 (12%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL---IRLMGSR 560
+ + G G+GK+ L + + I S+++Q E + L R
Sbjct: 207 VLLYGPPGTGKTLLARAVAH-HTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPS 265
Query: 561 IVIISETNENDEINAAKIKQMTGGDC----MTARLNYGNTYSESPASFTPFIVPNKHLFV 616
I+ + E D I +++I+ +GGD L E+ + + N +
Sbjct: 266 IIFMDEI---DSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATN---RI 319
Query: 617 RNPDDAWWR--RY-IVIPFDKPIANRDASFA 644
D A R R I F P N +A
Sbjct: 320 DILDPALLRPGRIDRKIEF--PPPNEEARLD 348
>gi|307212064|gb|EFN87947.1| 26S protease regulatory subunit 8 [Harpegnathos saltator]
Length = 405
Score = 41.2 bits (95), Expect = 0.68, Method: Composition-based stats.
Identities = 31/151 (20%), Positives = 53/151 (35%), Gaps = 19/151 (12%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL---IRLMGSR 560
+ + G G+GK+ L + + I S+++Q E + L R
Sbjct: 185 VLLYGPPGTGKTLLARAVAH-HTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPS 243
Query: 561 IVIISETNENDEINAAKIKQMTGGDC----MTARLNYGNTYSESPASFTPFIVPNKHLFV 616
I+ + E D I +++I+ +GGD L E+ + + N +
Sbjct: 244 IIFMDEI---DSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATN---RI 297
Query: 617 RNPDDAWWR--RY-IVIPFDKPIANRDASFA 644
D A R R I F P N +A
Sbjct: 298 DILDPALLRPGRIDRKIEF--PPPNEEARLD 326
>gi|307175717|gb|EFN65582.1| 26S protease regulatory subunit 8 [Camponotus floridanus]
Length = 694
Score = 41.2 bits (95), Expect = 0.68, Method: Composition-based stats.
Identities = 31/151 (20%), Positives = 53/151 (35%), Gaps = 19/151 (12%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL---IRLMGSR 560
+ + G G+GK+ L + + I S+++Q E + L R
Sbjct: 185 VLLYGPPGTGKTLLARAVAH-HTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPS 243
Query: 561 IVIISETNENDEINAAKIKQMTGGDC----MTARLNYGNTYSESPASFTPFIVPNKHLFV 616
I+ + E D I +++I+ +GGD L E+ + + N +
Sbjct: 244 IIFMDEI---DSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATN---RI 297
Query: 617 RNPDDAWWR--RY-IVIPFDKPIANRDASFA 644
D A R R I F P N +A
Sbjct: 298 DILDPALLRPGRIDRKIEF--PPPNEEARLD 326
>gi|289743503|gb|ADD20499.1| 26S proteasome regulatory complex ATPase RPT6 [Glossina morsitans
morsitans]
Length = 404
Score = 41.2 bits (95), Expect = 0.68, Method: Composition-based stats.
Identities = 31/151 (20%), Positives = 53/151 (35%), Gaps = 19/151 (12%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL---IRLMGSR 560
+ + G G+GK+ L + + I S+++Q E + L R
Sbjct: 184 VLLYGPPGTGKTLLARAVAH-HTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPS 242
Query: 561 IVIISETNENDEINAAKIKQMTGGDC----MTARLNYGNTYSESPASFTPFIVPNKHLFV 616
I+ + E D I +++I+ +GGD L E+ + + N +
Sbjct: 243 IIFMDEI---DSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATN---RI 296
Query: 617 RNPDDAWWR--RY-IVIPFDKPIANRDASFA 644
D A R R I F P N +A
Sbjct: 297 DILDPALLRPGRIDRKIEF--PPPNEEARLD 325
>gi|270013070|gb|EFA09518.1| hypothetical protein TcasGA2_TC011620 [Tribolium castaneum]
Length = 441
Score = 41.2 bits (95), Expect = 0.68, Method: Composition-based stats.
Identities = 31/151 (20%), Positives = 53/151 (35%), Gaps = 19/151 (12%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL---IRLMGSR 560
+ + G G+GK+ L + + I S+++Q E + L R
Sbjct: 221 VLLYGPPGTGKTLLARAVAH-HTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPS 279
Query: 561 IVIISETNENDEINAAKIKQMTGGDC----MTARLNYGNTYSESPASFTPFIVPNKHLFV 616
I+ + E D I +++I+ +GGD L E+ + + N +
Sbjct: 280 IIFMDEI---DSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATN---RI 333
Query: 617 RNPDDAWWR--RY-IVIPFDKPIANRDASFA 644
D A R R I F P N +A
Sbjct: 334 DILDPALLRPGRIDRKIEF--PPPNEEARLD 362
>gi|195438627|ref|XP_002067234.1| GK16292 [Drosophila willistoni]
gi|194163319|gb|EDW78220.1| GK16292 [Drosophila willistoni]
Length = 405
Score = 41.2 bits (95), Expect = 0.68, Method: Composition-based stats.
Identities = 31/151 (20%), Positives = 53/151 (35%), Gaps = 19/151 (12%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL---IRLMGSR 560
+ + G G+GK+ L + + I S+++Q E + L R
Sbjct: 185 VLLYGPPGTGKTLLARAVAH-HTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPS 243
Query: 561 IVIISETNENDEINAAKIKQMTGGDC----MTARLNYGNTYSESPASFTPFIVPNKHLFV 616
I+ + E D I +++I+ +GGD L E+ + + N +
Sbjct: 244 IIFMDEI---DSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATN---RI 297
Query: 617 RNPDDAWWR--RY-IVIPFDKPIANRDASFA 644
D A R R I F P N +A
Sbjct: 298 DILDPALLRPGRIDRKIEF--PPPNEEARLD 326
>gi|195393634|ref|XP_002055458.1| GJ19383 [Drosophila virilis]
gi|194149968|gb|EDW65659.1| GJ19383 [Drosophila virilis]
Length = 405
Score = 41.2 bits (95), Expect = 0.68, Method: Composition-based stats.
Identities = 31/151 (20%), Positives = 53/151 (35%), Gaps = 19/151 (12%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL---IRLMGSR 560
+ + G G+GK+ L + + I S+++Q E + L R
Sbjct: 185 VLLYGPPGTGKTLLARAVAH-HTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPS 243
Query: 561 IVIISETNENDEINAAKIKQMTGGDC----MTARLNYGNTYSESPASFTPFIVPNKHLFV 616
I+ + E D I +++I+ +GGD L E+ + + N +
Sbjct: 244 IIFMDEI---DSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATN---RI 297
Query: 617 RNPDDAWWR--RY-IVIPFDKPIANRDASFA 644
D A R R I F P N +A
Sbjct: 298 DILDPALLRPGRIDRKIEF--PPPNEEARLD 326
>gi|195164327|ref|XP_002023000.1| GL16409 [Drosophila persimilis]
gi|194105062|gb|EDW27105.1| GL16409 [Drosophila persimilis]
Length = 269
Score = 41.2 bits (95), Expect = 0.68, Method: Composition-based stats.
Identities = 31/151 (20%), Positives = 53/151 (35%), Gaps = 19/151 (12%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL---IRLMGSR 560
+ + G G+GK+ L + + I S+++Q E + L R
Sbjct: 49 VLLYGPPGTGKTLLARAVAH-HTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPS 107
Query: 561 IVIISETNENDEINAAKIKQMTGGDC----MTARLNYGNTYSESPASFTPFIVPNKHLFV 616
I+ + E D I +++I+ +GGD L E+ + + N +
Sbjct: 108 IIFMDEI---DSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATN---RI 161
Query: 617 RNPDDAWWR--RY-IVIPFDKPIANRDASFA 644
D A R R I F P N +A
Sbjct: 162 DILDPALLRPGRIDRKIEF--PPPNEEARLD 190
>gi|195134921|ref|XP_002011885.1| GI14329 [Drosophila mojavensis]
gi|193909139|gb|EDW08006.1| GI14329 [Drosophila mojavensis]
Length = 405
Score = 41.2 bits (95), Expect = 0.68, Method: Composition-based stats.
Identities = 31/151 (20%), Positives = 53/151 (35%), Gaps = 19/151 (12%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL---IRLMGSR 560
+ + G G+GK+ L + + I S+++Q E + L R
Sbjct: 185 VLLYGPPGTGKTLLARAVAH-HTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPS 243
Query: 561 IVIISETNENDEINAAKIKQMTGGDC----MTARLNYGNTYSESPASFTPFIVPNKHLFV 616
I+ + E D I +++I+ +GGD L E+ + + N +
Sbjct: 244 IIFMDEI---DSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATN---RI 297
Query: 617 RNPDDAWWR--RY-IVIPFDKPIANRDASFA 644
D A R R I F P N +A
Sbjct: 298 DILDPALLRPGRIDRKIEF--PPPNEEARLD 326
>gi|195044618|ref|XP_001991849.1| GH11847 [Drosophila grimshawi]
gi|193901607|gb|EDW00474.1| GH11847 [Drosophila grimshawi]
Length = 405
Score = 41.2 bits (95), Expect = 0.68, Method: Composition-based stats.
Identities = 31/151 (20%), Positives = 53/151 (35%), Gaps = 19/151 (12%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL---IRLMGSR 560
+ + G G+GK+ L + + I S+++Q E + L R
Sbjct: 185 VLLYGPPGTGKTLLARAVAH-HTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPS 243
Query: 561 IVIISETNENDEINAAKIKQMTGGDC----MTARLNYGNTYSESPASFTPFIVPNKHLFV 616
I+ + E D I +++I+ +GGD L E+ + + N +
Sbjct: 244 IIFMDEI---DSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATN---RI 297
Query: 617 RNPDDAWWR--RY-IVIPFDKPIANRDASFA 644
D A R R I F P N +A
Sbjct: 298 DILDPALLRPGRIDRKIEF--PPPNEEARLD 326
>gi|194897562|ref|XP_001978679.1| GG19719 [Drosophila erecta]
gi|195346140|ref|XP_002039625.1| GM23074 [Drosophila sechellia]
gi|195482260|ref|XP_002101976.1| GE17917 [Drosophila yakuba]
gi|195567993|ref|XP_002107540.1| GD17527 [Drosophila simulans]
gi|190650328|gb|EDV47606.1| GG19719 [Drosophila erecta]
gi|194134851|gb|EDW56367.1| GM23074 [Drosophila sechellia]
gi|194189500|gb|EDX03084.1| GE17917 [Drosophila yakuba]
gi|194204950|gb|EDX18526.1| GD17527 [Drosophila simulans]
Length = 405
Score = 41.2 bits (95), Expect = 0.68, Method: Composition-based stats.
Identities = 31/151 (20%), Positives = 53/151 (35%), Gaps = 19/151 (12%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL---IRLMGSR 560
+ + G G+GK+ L + + I S+++Q E + L R
Sbjct: 185 VLLYGPPGTGKTLLARAVAH-HTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPS 243
Query: 561 IVIISETNENDEINAAKIKQMTGGDC----MTARLNYGNTYSESPASFTPFIVPNKHLFV 616
I+ + E D I +++I+ +GGD L E+ + + N +
Sbjct: 244 IIFMDEI---DSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATN---RI 297
Query: 617 RNPDDAWWR--RY-IVIPFDKPIANRDASFA 644
D A R R I F P N +A
Sbjct: 298 DILDPALLRPGRIDRKIEF--PPPNEEARLD 326
>gi|194769924|ref|XP_001967051.1| GF21725 [Drosophila ananassae]
gi|190622846|gb|EDV38370.1| GF21725 [Drosophila ananassae]
Length = 405
Score = 41.2 bits (95), Expect = 0.68, Method: Composition-based stats.
Identities = 31/151 (20%), Positives = 53/151 (35%), Gaps = 19/151 (12%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL---IRLMGSR 560
+ + G G+GK+ L + + I S+++Q E + L R
Sbjct: 185 VLLYGPPGTGKTLLARAVAH-HTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPS 243
Query: 561 IVIISETNENDEINAAKIKQMTGGDC----MTARLNYGNTYSESPASFTPFIVPNKHLFV 616
I+ + E D I +++I+ +GGD L E+ + + N +
Sbjct: 244 IIFMDEI---DSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATN---RI 297
Query: 617 RNPDDAWWR--RY-IVIPFDKPIANRDASFA 644
D A R R I F P N +A
Sbjct: 298 DILDPALLRPGRIDRKIEF--PPPNEEARLD 326
>gi|170048670|ref|XP_001870728.1| 26S protease regulatory subunit 8 [Culex quinquefasciatus]
gi|167870706|gb|EDS34089.1| 26S protease regulatory subunit 8 [Culex quinquefasciatus]
Length = 402
Score = 41.2 bits (95), Expect = 0.68, Method: Composition-based stats.
Identities = 31/151 (20%), Positives = 53/151 (35%), Gaps = 19/151 (12%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL---IRLMGSR 560
+ + G G+GK+ L + + I S+++Q E + L R
Sbjct: 182 VLLYGPPGTGKTLLARAVAH-HTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPS 240
Query: 561 IVIISETNENDEINAAKIKQMTGGDC----MTARLNYGNTYSESPASFTPFIVPNKHLFV 616
I+ + E D I +++I+ +GGD L E+ + + N +
Sbjct: 241 IIFMDEI---DSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATN---RI 294
Query: 617 RNPDDAWWR--RY-IVIPFDKPIANRDASFA 644
D A R R I F P N +A
Sbjct: 295 DILDPALLRPGRIDRKIEF--PPPNEEARLD 323
>gi|148706258|gb|EDL38205.1| regulatory factor X, 2 (influences HLA class II expression),
isoform CRA_a [Mus musculus]
Length = 139
Score = 41.2 bits (95), Expect = 0.68, Method: Composition-based stats.
Identities = 13/97 (13%), Positives = 39/97 (40%), Gaps = 7/97 (7%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
W+ D + E + SL Y + ++ + + ++ + + + G++
Sbjct: 39 QWLLDNYETAEGVSLPRSSLYNHYLRHCQE---HKLEPVNAASFGKLI--RSVFMGLRTR 93
Query: 755 KIEKEWKSKRIIKGLKLKPA--FESVDDNSNIIDFKR 789
++ SK G++LKP + +++ + ++
Sbjct: 94 RLGTRGNSKYHYYGIRLKPDSPLNRLQEDTQYMAMRQ 130
>gi|157822591|ref|NP_001100347.1| DNA-binding protein RFX2 [Rattus norvegicus]
gi|254797631|sp|B2GV50|RFX2_RAT RecName: Full=DNA-binding protein RFX2; AltName: Full=Regulatory
factor X 2
gi|149028165|gb|EDL83603.1| similar to DNA-binding protein RFX2 [Rattus norvegicus]
gi|183986563|gb|AAI66527.1| Regulatory factor X, 2 (influences HLA class II expression) [Rattus
norvegicus]
Length = 692
Score = 41.2 bits (95), Expect = 0.68, Method: Composition-based stats.
Identities = 13/97 (13%), Positives = 39/97 (40%), Gaps = 7/97 (7%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
W+ D + E + SL Y + ++ + + ++ + + + G++
Sbjct: 171 QWLLDNYETAEGVSLPRSSLYNHYLRHCQE---HKLEPVNAASFGKLI--RSVFMGLRTR 225
Query: 755 KIEKEWKSKRIIKGLKLKPA--FESVDDNSNIIDFKR 789
++ SK G++LKP + +++ + ++
Sbjct: 226 RLGTRGNSKYHYYGIRLKPDSPLNRLQEDTQYMAMRQ 262
>gi|157106669|ref|XP_001649429.1| 26S protease regulatory subunit [Aedes aegypti]
gi|157136893|ref|XP_001663850.1| 26S protease regulatory subunit [Aedes aegypti]
gi|108868799|gb|EAT33024.1| 26S protease regulatory subunit [Aedes aegypti]
gi|108869833|gb|EAT34058.1| 26S protease regulatory subunit [Aedes aegypti]
Length = 403
Score = 41.2 bits (95), Expect = 0.68, Method: Composition-based stats.
Identities = 31/151 (20%), Positives = 53/151 (35%), Gaps = 19/151 (12%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL---IRLMGSR 560
+ + G G+GK+ L + + I S+++Q E + L R
Sbjct: 183 VLLYGPPGTGKTLLARAVAH-HTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPS 241
Query: 561 IVIISETNENDEINAAKIKQMTGGDC----MTARLNYGNTYSESPASFTPFIVPNKHLFV 616
I+ + E D I +++I+ +GGD L E+ + + N +
Sbjct: 242 IIFMDEI---DSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATN---RI 295
Query: 617 RNPDDAWWR--RY-IVIPFDKPIANRDASFA 644
D A R R I F P N +A
Sbjct: 296 DILDPALLRPGRIDRKIEF--PPPNEEARLD 324
>gi|91091360|ref|XP_972551.1| PREDICTED: similar to GA13327-PA [Tribolium castaneum]
Length = 404
Score = 41.2 bits (95), Expect = 0.68, Method: Composition-based stats.
Identities = 31/151 (20%), Positives = 53/151 (35%), Gaps = 19/151 (12%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL---IRLMGSR 560
+ + G G+GK+ L + + I S+++Q E + L R
Sbjct: 184 VLLYGPPGTGKTLLARAVAH-HTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPS 242
Query: 561 IVIISETNENDEINAAKIKQMTGGDC----MTARLNYGNTYSESPASFTPFIVPNKHLFV 616
I+ + E D I +++I+ +GGD L E+ + + N +
Sbjct: 243 IIFMDEI---DSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATN---RI 296
Query: 617 RNPDDAWWR--RY-IVIPFDKPIANRDASFA 644
D A R R I F P N +A
Sbjct: 297 DILDPALLRPGRIDRKIEF--PPPNEEARLD 325
>gi|226958468|ref|NP_082063.1| DNA-binding protein RFX2 isoform 1 [Mus musculus]
gi|254763326|sp|P48379|RFX2_MOUSE RecName: Full=DNA-binding protein RFX2; AltName: Full=Regulatory
factor X 2
gi|26336468|dbj|BAC31919.1| unnamed protein product [Mus musculus]
Length = 717
Score = 41.2 bits (95), Expect = 0.68, Method: Composition-based stats.
Identities = 13/97 (13%), Positives = 39/97 (40%), Gaps = 7/97 (7%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
W+ D + E + SL Y + ++ + + ++ + + + G++
Sbjct: 196 QWLLDNYETAEGVSLPRSSLYNHYLRHCQE---HKLEPVNAASFGKLI--RSVFMGLRTR 250
Query: 755 KIEKEWKSKRIIKGLKLKPA--FESVDDNSNIIDFKR 789
++ SK G++LKP + +++ + ++
Sbjct: 251 RLGTRGNSKYHYYGIRLKPDSPLNRLQEDTQYMAMRQ 287
>gi|66520165|ref|XP_623053.1| PREDICTED: 26S protease regulatory subunit 8 isoform 1 [Apis
mellifera]
Length = 405
Score = 41.2 bits (95), Expect = 0.68, Method: Composition-based stats.
Identities = 31/151 (20%), Positives = 53/151 (35%), Gaps = 19/151 (12%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL---IRLMGSR 560
+ + G G+GK+ L + + I S+++Q E + L R
Sbjct: 185 VLLYGPPGTGKTLLARAVAH-HTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPS 243
Query: 561 IVIISETNENDEINAAKIKQMTGGDC----MTARLNYGNTYSESPASFTPFIVPNKHLFV 616
I+ + E D I +++I+ +GGD L E+ + + N +
Sbjct: 244 IIFMDEI---DSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATN---RI 297
Query: 617 RNPDDAWWR--RY-IVIPFDKPIANRDASFA 644
D A R R I F P N +A
Sbjct: 298 DILDPALLRPGRIDRKIEF--PPPNEEARLD 326
>gi|19920408|ref|NP_608447.1| Pros45 [Drosophila melanogaster]
gi|14286160|sp|O18413|PRS8_DROME RecName: Full=26S protease regulatory subunit 8
gi|2815905|gb|AAC63219.1| Pros45 proteosome subunit homolog [Drosophila melanogaster]
gi|7295522|gb|AAF50835.1| Pros45 [Drosophila melanogaster]
gi|15291775|gb|AAK93156.1| LD26005p [Drosophila melanogaster]
gi|220945798|gb|ACL85442.1| Pros45-PA [synthetic construct]
gi|220955554|gb|ACL90320.1| Pros45-PA [synthetic construct]
Length = 405
Score = 41.2 bits (95), Expect = 0.68, Method: Composition-based stats.
Identities = 31/151 (20%), Positives = 53/151 (35%), Gaps = 19/151 (12%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL---IRLMGSR 560
+ + G G+GK+ L + + I S+++Q E + L R
Sbjct: 185 VLLYGPPGTGKTLLARAVAH-HTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPS 243
Query: 561 IVIISETNENDEINAAKIKQMTGGDC----MTARLNYGNTYSESPASFTPFIVPNKHLFV 616
I+ + E D I +++I+ +GGD L E+ + + N +
Sbjct: 244 IIFMDEI---DSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATN---RI 297
Query: 617 RNPDDAWWR--RY-IVIPFDKPIANRDASFA 644
D A R R I F P N +A
Sbjct: 298 DILDPALLRPGRIDRKIEF--PPPNEEARLD 326
>gi|1709799|sp|P54814|PRS8_MANSE RecName: Full=26S protease regulatory subunit 8; AltName:
Full=Protein 18-56
gi|1167963|gb|AAC46996.1| 18-56 protein [Manduca sexta]
Length = 402
Score = 41.2 bits (95), Expect = 0.68, Method: Composition-based stats.
Identities = 31/151 (20%), Positives = 53/151 (35%), Gaps = 19/151 (12%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL---IRLMGSR 560
+ + G G+GK+ L + + I S+++Q E + L R
Sbjct: 182 VLLYGPPGTGKTLLARAVAH-HTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPS 240
Query: 561 IVIISETNENDEINAAKIKQMTGGDC----MTARLNYGNTYSESPASFTPFIVPNKHLFV 616
I+ + E D I +++I+ +GGD L E+ + + N +
Sbjct: 241 IIFMDEI---DSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATN---RI 294
Query: 617 RNPDDAWWR--RY-IVIPFDKPIANRDASFA 644
D A R R I F P N +A
Sbjct: 295 DILDPALLRPGRIDRKIEF--PPPNEEARLD 323
>gi|58376339|ref|XP_308557.2| AGAP007243-PA [Anopheles gambiae str. PEST]
gi|55245639|gb|EAA04200.3| AGAP007243-PA [Anopheles gambiae str. PEST]
Length = 403
Score = 41.2 bits (95), Expect = 0.68, Method: Composition-based stats.
Identities = 31/151 (20%), Positives = 53/151 (35%), Gaps = 19/151 (12%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL---IRLMGSR 560
+ + G G+GK+ L + + I S+++Q E + L R
Sbjct: 183 VLLYGPPGTGKTLLARAVAH-HTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPS 241
Query: 561 IVIISETNENDEINAAKIKQMTGGDC----MTARLNYGNTYSESPASFTPFIVPNKHLFV 616
I+ + E D I +++I+ +GGD L E+ + + N +
Sbjct: 242 IIFMDEI---DSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATN---RI 295
Query: 617 RNPDDAWWR--RY-IVIPFDKPIANRDASFA 644
D A R R I F P N +A
Sbjct: 296 DILDPALLRPGRIDRKIEF--PPPNEEARLD 324
>gi|125983936|ref|XP_001355733.1| GA13327 [Drosophila pseudoobscura pseudoobscura]
gi|54644049|gb|EAL32792.1| GA13327 [Drosophila pseudoobscura pseudoobscura]
Length = 405
Score = 41.2 bits (95), Expect = 0.68, Method: Composition-based stats.
Identities = 31/151 (20%), Positives = 53/151 (35%), Gaps = 19/151 (12%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL---IRLMGSR 560
+ + G G+GK+ L + + I S+++Q E + L R
Sbjct: 185 VLLYGPPGTGKTLLARAVAH-HTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPS 243
Query: 561 IVIISETNENDEINAAKIKQMTGGDC----MTARLNYGNTYSESPASFTPFIVPNKHLFV 616
I+ + E D I +++I+ +GGD L E+ + + N +
Sbjct: 244 IIFMDEI---DSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATN---RI 297
Query: 617 RNPDDAWWR--RY-IVIPFDKPIANRDASFA 644
D A R R I F P N +A
Sbjct: 298 DILDPALLRPGRIDRKIEF--PPPNEEARLD 326
>gi|194246547|ref|YP_002004186.1| putative ATP-dependent Zn protease [Candidatus Phytoplasma mali]
gi|193806904|emb|CAP18333.1| putative ATP-dependent Zn protease [Candidatus Phytoplasma mali]
Length = 409
Score = 41.2 bits (95), Expect = 0.69, Method: Composition-based stats.
Identities = 40/225 (17%), Positives = 82/225 (36%), Gaps = 30/225 (13%)
Query: 470 LDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRF---IHIRGVGGSGKSTLMNLIKYAFG 526
L+ + G + +E + C+ ++ Q+ + GV G+GK+TL +
Sbjct: 134 LEELIGLKQEKEALSDLRTCMSYSIALKEFKQKLPNGVIFHGVPGTGKTTLERALAKTTN 193
Query: 527 NQYVINAEASDIMQNRPPEAGKANPSLIRL---MGSRIVIISETNENDEINAAKIKQMTG 583
Y + + ++ + E K +L + M I++ + EN + K + +
Sbjct: 194 FHY-MEIDGTNFQKYNTKEGIKMVNALFKKTSNMDRGIIVCIDECENTWGSLKKAENQST 252
Query: 584 GDCMTARLNYGNTYS----ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR 639
+ +T + N+++ ++ +I HL + DDA R FD I +
Sbjct: 253 KNIVT---KFKNSFTSIENQNHQKQVFWIGTTNHLE--DIDDAILSR-----FDYKIEVK 302
Query: 640 DASFAQK-------LETKYTLEAKKWFLKGVKAYISKGLDVDIPE 677
+ L K + +G Y+ L +I E
Sbjct: 303 PLDLEGRKKYFDHVLVKKLKND--NLISEGAIRYLIDQLAPEIEE 345
>gi|123373543|ref|XP_001297628.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121877866|gb|EAX84698.1| hypothetical protein TVAG_353010 [Trichomonas vaginalis G3]
Length = 211
Score = 41.2 bits (95), Expect = 0.69, Method: Composition-based stats.
Identities = 36/209 (17%), Positives = 66/209 (31%), Gaps = 19/209 (9%)
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGN 595
M N GK N S+ + +++ +E D +N+ +K + Y +
Sbjct: 1 MTNLENICGKFNSSIENMK---LIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKD 57
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
+ + N D RRY+V+ +D + L T +
Sbjct: 58 QRVCENVANFIMVSNNAVPMKLESSD---RRYVVVR-TSEAHMQDTEYFDDLAETLTSDF 113
Query: 656 KKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
+ IP + E + Y+ +ID+ + + SL
Sbjct: 114 YNHLFSYFMTLDISKFNPRQIPHTEERQTLLEANKS-VYELFIDET----DFECLDERSL 168
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLK 743
Y +Y ++ Y S RT N+K
Sbjct: 169 YDEYKQYCQE---YGYMTASKRTFLANVK 194
>gi|123136133|ref|XP_001277174.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121820281|gb|EAX64244.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 194
Score = 41.2 bits (95), Expect = 0.69, Method: Composition-based stats.
Identities = 31/188 (16%), Positives = 60/188 (31%), Gaps = 16/188 (8%)
Query: 560 RIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV 616
++++ +E D +N+ +K + Y + + + N
Sbjct: 2 KLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNTVPMK 61
Query: 617 RNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-I 675
D RRY+V+ +D + L T + + I
Sbjct: 62 LESSD---RRYVVVR-TSEAHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQI 117
Query: 676 PEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIST 735
P + E + Y+ +ID+ + + SL SY +Y ++ Y S
Sbjct: 118 PHTEERQTLLEANKS-VYELFIDET----DFECLDERSLYDSYKQYCQE---YGYMTASK 169
Query: 736 RTVTLNLK 743
RT N+K
Sbjct: 170 RTFLANVK 177
>gi|123184135|ref|XP_001281039.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121834741|gb|EAX68109.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 194
Score = 41.2 bits (95), Expect = 0.70, Method: Composition-based stats.
Identities = 31/188 (16%), Positives = 60/188 (31%), Gaps = 16/188 (8%)
Query: 560 RIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV 616
++++ +E D +N+ +K + Y + + + N
Sbjct: 2 KLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFVMVSNNAVPMK 61
Query: 617 RNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-I 675
D RRY+V+ +D + L T + + I
Sbjct: 62 LESSD---RRYVVVR-TSEAHMQDTEYFDALSETLTSDFYNHLFSYFMTLDISKFNPRQI 117
Query: 676 PEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIST 735
P + E + Y+ +ID+ + + SL SY +Y ++ Y S
Sbjct: 118 PHTEERQTLLEANKS-VYELFIDETDFVSLDER----SLYDSYKQYCQE---YGYMTASK 169
Query: 736 RTVTLNLK 743
RT N+K
Sbjct: 170 RTFLANVK 177
>gi|119964606|ref|YP_950802.1| DNA helicase [Maruca vitrata MNPV]
gi|119514449|gb|ABL76024.1| DNA helicase [Maruca vitrata MNPV]
Length = 1224
Score = 41.2 bits (95), Expect = 0.70, Method: Composition-based stats.
Identities = 23/155 (14%), Positives = 60/155 (38%), Gaps = 9/155 (5%)
Query: 484 DYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP 543
+ + + ++ +++ G GSGKS+ L+ Y++ D +
Sbjct: 891 NMLMHFAASLAIPVDYGKKAVYMPGAPGSGKSSFFELL------DYLVLMHKFDDDNHSG 944
Query: 544 PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPAS 603
+ + + + S++ I+E + + + K+ ++ + A+
Sbjct: 945 ESNKETSDKEVSKLNSQLYTINELKQ---CSESYFKKHADSSKSDSKSRKYQGLLKYEAN 1001
Query: 604 FTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN 638
+ IV NK L+V + DD R++++ + +
Sbjct: 1002 YKMLIVNNKPLYVDDYDDGVQDRFLIVYTNHKFVD 1036
>gi|256807727|gb|ACV30144.1| E1 [Human papillomavirus type 117]
Length = 679
Score = 41.2 bits (95), Expect = 0.71, Method: Composition-based stats.
Identities = 25/178 (14%), Positives = 51/178 (28%), Gaps = 24/178 (13%)
Query: 462 EGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLI 521
+ +P +FL + E + + C L G + + G +GKS +
Sbjct: 468 DWKPIVQFLRY-----QDVEFIPFL--CAFKTFLQGIPKKSCLVFYGPADTGKSYFCMSL 520
Query: 522 KYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN--DEINAAKIK 579
G + A +S + L L ++I ++ + + I+
Sbjct: 521 LRFLGGAVISYANSSS------------HFWLQPLAEAKIGLLDDATSQCWNYIDTYLRN 568
Query: 580 QMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637
+ G R + + P I N + + R + F
Sbjct: 569 ALDGNQVCIDRKHRALLQLKCPP---LLITTNVNPLTDDRWKFLRSRLQLFTFKNTFP 623
>gi|82702921|ref|YP_412487.1| ATP-dependent metalloprotease FtsH [Nitrosospira multiformis ATCC
25196]
gi|82410986|gb|ABB75095.1| membrane protease FtsH catalytic subunit [Nitrosospira multiformis
ATCC 25196]
Length = 635
Score = 41.2 bits (95), Expect = 0.71, Method: Composition-based stats.
Identities = 38/192 (19%), Positives = 61/192 (31%), Gaps = 28/192 (14%)
Query: 454 KSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSG 513
K T F + E + + EEV+++ G + LGG + I + G G+G
Sbjct: 161 KETKVTFADVAGVDEAKEEL------EEVINFLKDPAGYSRLGGRVPKG-ILLVGPPGTG 213
Query: 514 KSTLMNLIKYAFGNQYV--INAEASDIMQNRPPEAGKANPSL---IRLMGSRIVIISETN 568
K+ L + G V + S+ ++ L R M I+ I E +
Sbjct: 214 KTLL---ARAVAGEANVPFFSISGSEFVEMFVGVGAARVRDLFEQARQMAPAIIFIDELD 270
Query: 569 ENDEINAAKIKQMTGGD--CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR- 625
A + G D T P S + + D A R
Sbjct: 271 SLGRARGAY--GLGGHDEKEQTLNQLLAELDGFDPKSGVVLLAATNRPEI--LDPALLRA 326
Query: 626 -RYIVIPFDKPI 636
R FD+ +
Sbjct: 327 GR-----FDRQV 333
>gi|108796863|ref|YP_636459.1| hypothetical protein StpuCp096 [Staurastrum punctulatum]
gi|61393631|gb|AAX45772.1| hypothetical protein [Staurastrum punctulatum]
Length = 108
Score = 41.2 bits (95), Expect = 0.72, Method: Composition-based stats.
Identities = 7/41 (17%), Positives = 16/41 (39%)
Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ 467
R + ++G+ D +T + + + Y T T +
Sbjct: 48 RLINFKNGMFDTKTLRLMPHDSKFYFTHMTIGEDFSMTSTP 88
>gi|123249958|ref|XP_001288915.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121859005|gb|EAX75985.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 211
Score = 41.2 bits (95), Expect = 0.72, Method: Composition-based stats.
Identities = 37/209 (17%), Positives = 67/209 (32%), Gaps = 19/209 (9%)
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGN 595
M N GK N S+ + +++ +E D +N+ +K + Y +
Sbjct: 1 MTNLENICGKFNSSIENMK---LIVCNELQSIDTTKVLNSDALKSLITDKAGVVERKYKD 57
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
+ + N D RRY+V+ +D + L T +
Sbjct: 58 QRVCENVANFIMVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDALSECLTSDF 113
Query: 656 KKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
+ IP + E + Y+ +ID+ + + SL
Sbjct: 114 YNHLFSYFMTLDISKFNPRQIPHTKERQTLLEANKS-VYELFIDETDFVSLDER----SL 168
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLK 743
SY +Y ++ Y S RT N+K
Sbjct: 169 YDSYKQYCQE---YGYMAASKRTFLANVK 194
>gi|331661186|ref|ZP_08362118.1| conserved hypothetical protein [Escherichia coli TA206]
gi|331052228|gb|EGI24267.1| conserved hypothetical protein [Escherichia coli TA206]
Length = 889
Score = 41.2 bits (95), Expect = 0.73, Method: Composition-based stats.
Identities = 34/219 (15%), Positives = 70/219 (31%), Gaps = 24/219 (10%)
Query: 455 STGTPFVEGEP-SQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNK--AQRFIHI--RGV 509
+ + + + + +++ + F + ++ +G + + F + G
Sbjct: 491 TLQINYKKPDEFTTSWVEDLWLAFGEKGIIT-LAFWLGSLFSEQIRDKEESFPFLEVTGE 549
Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569
G+GKSTL++ G + + + + L V++ E +
Sbjct: 550 PGTGKSTLIDFCWRLCGRDNYEGVDP---TKGSEAGWKRTFGQVAGLP----VVLIEADR 602
Query: 570 NDE------INAAKIKQMTGGDCMTARLNYGNTYSESPASFT--PFIVPNKHLFVRNPDD 621
D + +K + G + R N + F I N + N
Sbjct: 603 GDNAQKRGAFDFDNLKSLYNGGGIGVRGVKANNNNTYDPDFKGAIVIAQNARV---NASP 659
Query: 622 AWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFL 660
A R I I DK + D A + Y +E F+
Sbjct: 660 AIIERLIRIYTDKKRHSPDTRLAARRLELYPVEKVSGFI 698
>gi|123338166|ref|XP_001294389.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121872288|gb|EAX81459.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 211
Score = 41.2 bits (95), Expect = 0.73, Method: Composition-based stats.
Identities = 37/210 (17%), Positives = 66/210 (31%), Gaps = 19/210 (9%)
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGN 595
M N GK N S+ + +++ +E D +N+ +K + Y +
Sbjct: 1 MTNLENICGKFNSSIENMK---LIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKD 57
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
+ + N D RRY+V+ +D + L T
Sbjct: 58 QRVCENVANFIMVSNNVVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTPNF 113
Query: 656 KKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
+ IP + E + Y+ +ID+ + + SL
Sbjct: 114 YNHLFSYFMTLDISKFNPRQIPHTEERQTLLEANKS-VYELFIDE----NDFECLDERSL 168
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLKQ 744
SY +Y ++ Y S RT N+K
Sbjct: 169 YDSYKQYCQE---YGYMTASKRTFLANVKN 195
>gi|123317250|ref|XP_001292596.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121868313|gb|EAX79666.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 211
Score = 41.2 bits (95), Expect = 0.73, Method: Composition-based stats.
Identities = 37/210 (17%), Positives = 66/210 (31%), Gaps = 19/210 (9%)
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGN 595
M N GK N S+ + +++ +E D +N+ +K + Y +
Sbjct: 1 MTNLENICGKFNSSIENMK---LIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKD 57
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
+ + N D RRY+V+ +D + L T +
Sbjct: 58 QRVCENVANFIMVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDF 113
Query: 656 KKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
+ IP + E + Y+ +ID+ + SL
Sbjct: 114 YNHLFSYFMTLDISKFNPRQIPHTEERQTLLEANKS-VYELFIDETNFECLDER----SL 168
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLKQ 744
SY +Y ++ Y S RT N+K
Sbjct: 169 YDSYKQYCQE---YGYMTASKRTFLANVKN 195
>gi|123231022|ref|XP_001286218.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121851323|gb|EAX73288.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 194
Score = 41.2 bits (95), Expect = 0.73, Method: Composition-based stats.
Identities = 31/189 (16%), Positives = 60/189 (31%), Gaps = 16/189 (8%)
Query: 560 RIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV 616
++++ +E D +N+ +K + Y + + + N
Sbjct: 2 KLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYRDQRVCENVANFVMVSNNAVPMK 61
Query: 617 RNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-I 675
D RRY+V+ +D + L T + + I
Sbjct: 62 LESSD---RRYVVVR-TSEAHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQI 117
Query: 676 PEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIST 735
P + E + Y+ +ID+ + + SL SY +Y ++ Y S
Sbjct: 118 PHTEERQTLLEANKS-VYELFIDET----DFECLDERSLYDSYKQYCQE---YGYMAASK 169
Query: 736 RTVTLNLKQ 744
RT N+K
Sbjct: 170 RTFLANVKN 178
>gi|239916596|ref|YP_002956154.1| hypothetical protein Mlut_00280 [Micrococcus luteus NCTC 2665]
gi|281414938|ref|ZP_06246680.1| hypothetical protein MlutN2_07018 [Micrococcus luteus NCTC 2665]
gi|239837803|gb|ACS29600.1| Hypothetical protein Mlut_00280 [Micrococcus luteus NCTC 2665]
Length = 314
Score = 41.2 bits (95), Expect = 0.73, Method: Composition-based stats.
Identities = 16/128 (12%), Positives = 37/128 (28%), Gaps = 6/128 (4%)
Query: 17 GFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKL----PACGFGFVCGVGEQPLYAFDIDS 72
G + P G KRP + + +++ P G + D+D
Sbjct: 32 GVPVFPCVPGGKRPLTEHGFHDATTDPGQVEAWWRTHPDANLAVPTGAASG-MVVVDVDV 90
Query: 73 KDE-KTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGC 131
F+ + + P + + +++ ++ + +D G
Sbjct: 91 HAPTDGYEAFERAHRAGLVSGWAFLVSTPSGGMHAYYPATPDRAQRSWQAARAGVDFRGG 150
Query: 132 GQYFVAYN 139
G Y +
Sbjct: 151 GGYILLPP 158
>gi|123277263|ref|XP_001289978.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121861821|gb|EAX77048.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 211
Score = 41.2 bits (95), Expect = 0.73, Method: Composition-based stats.
Identities = 36/209 (17%), Positives = 66/209 (31%), Gaps = 19/209 (9%)
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGN 595
M N GK N S+ + +++ +E D +N+ +K + Y +
Sbjct: 1 MTNLENICGKFNSSIENMK---LIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKD 57
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
+ + N D RRY+V+ +D + L T +
Sbjct: 58 QRVCENVANFIMVSNNVVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDF 113
Query: 656 KKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
+ IP + E + Y+ +ID+ + + SL
Sbjct: 114 YNHLFSYFMTLDISKFNPRQIPHTEERQTLLEANKS-VYELFIDETDFVSLDEK----SL 168
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLK 743
Y +Y ++ Y S RT N+K
Sbjct: 169 YDEYKQYCQE---YGYMAASKRTFLANVK 194
>gi|329946462|ref|ZP_08294005.1| AMP-binding enzyme [Actinomyces sp. oral taxon 170 str. F0386]
gi|328527284|gb|EGF54286.1| AMP-binding enzyme [Actinomyces sp. oral taxon 170 str. F0386]
Length = 1825
Score = 41.2 bits (95), Expect = 0.74, Method: Composition-based stats.
Identities = 20/134 (14%), Positives = 37/134 (27%), Gaps = 21/134 (15%)
Query: 441 GQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKA 500
G ++ + IT+ + + E F L E+ +Y R LL +
Sbjct: 1072 GVLLRDDRGFSITRESLDYYRVEERWNRFAQLEDEMRNGPELFEY-QRYAASTLLRQMRG 1130
Query: 501 QR----FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRL 556
+ G + + +G+ V A + ++
Sbjct: 1131 EVNPVDLFFPGGRTDN--------ARAIYGSNRVSTAMNEAVADAVAG--------IVES 1174
Query: 557 MGSRIVIISETNEN 570
G R V I E
Sbjct: 1175 RGGRTVRILEVGAG 1188
>gi|325578833|ref|ZP_08148880.1| serine/threonine protein phosphatase family protein [Haemophilus
parainfluenzae ATCC 33392]
gi|325159657|gb|EGC71789.1| serine/threonine protein phosphatase family protein [Haemophilus
parainfluenzae ATCC 33392]
Length = 685
Score = 41.2 bits (95), Expect = 0.75, Method: Composition-based stats.
Identities = 52/335 (15%), Positives = 101/335 (30%), Gaps = 51/335 (15%)
Query: 343 IWSLTLDKITASI-MNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSK 401
+W + + L +++++ + + +D +R
Sbjct: 84 LWKQAYENLATLAEFLQLNPVEQELLRFAMHLRSEGPMQDLFKCLPKSDLQRTAAIMADL 143
Query: 402 AK----STAQSLEAGSIFSITSDLLDSSSRFLGEQD----G-ILDLETGQKVKPTKELYI 452
K +L+ GS L+D + R G QD G LD + + +
Sbjct: 144 LKQPKNEILSALKKGSKLD-AYGLIDRNYRLDGVQDYLAWGETLDFDEFVTQPLNEYALL 202
Query: 453 TKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGS 512
T P V PS + D E ++ Y + + G N + I GV G+
Sbjct: 203 KSCTEIPQV---PSLQLDDFAHIAGMKEMMLTYLQQALKHHQKGVN-----LLIYGVPGT 254
Query: 513 GKSTLMNLIKYAFG--NQYVINAEASDIMQNRPPEAGKANPSLIRLMGS-RIVIISETNE 569
GK+ L+ A G + ++ + + + L G ++I E
Sbjct: 255 GKTEFAGLLAQALGISAYNITYMDSDGDIVKAEQRLNYSRLAQTLLNGKQALLIFDEIE- 313
Query: 570 NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV------RNPDDAW 623
D N + +++ + ++ + N + + D A+
Sbjct: 314 -DVFNGSLMER-------SVAQKNKAWTNQ-------LLENNNVPIIWLSNSVNSIDAAF 358
Query: 624 WRRYIVIPFDKPIANRDASFAQK--LETKYTLEAK 656
RR FD D K L ++
Sbjct: 359 LRR-----FDFVFEMPDLPLKNKSALISQLAGGKL 388
>gi|289167297|ref|YP_003445564.1| hypothetical protein smi_0424 [Streptococcus mitis B6]
gi|288906862|emb|CBJ21696.1| conserved hypothetical protein [Streptococcus mitis B6]
Length = 265
Score = 41.2 bits (95), Expect = 0.75, Method: Composition-based stats.
Identities = 26/211 (12%), Positives = 62/211 (29%), Gaps = 6/211 (2%)
Query: 8 EQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYA 67
+ A G+ +IP+ KR + K++++ S +I + +
Sbjct: 6 DYALHYQKLGYSVIPIDKKSKR--AITKFKDKTFSENEIRRFWHEQPDANIAWRTTDFFV 63
Query: 68 FDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLD 127
DID + +E+ P P + K + + +D
Sbjct: 64 IDIDVSVTENGYESLKEWELSQYIPKTLTATTPSGGKHIFLKKPKGIELSQDIRVKPGID 123
Query: 128 ILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLL----SEEDVEYLFKFFQEITVP 183
I +V K Y W + ++ + + + F + +
Sbjct: 124 IKANKNNYVLVAPSNNAKGSYKWDKSTEQMAEAPAEIISILQTSKQPKEPMSFTTDYSRG 183
Query: 184 LVKDKKSIIPSKTWTNNNNRQYTNREITAFL 214
K + + + ++ N + +F+
Sbjct: 184 EFSSKTAKLFEQVVFGLGDKGGRNNALASFI 214
>gi|209554157|ref|YP_002284525.1| ATP-dependent zinc metallopeptidase - cell division protein
[Ureaplasma urealyticum serovar 10 str. ATCC 33699]
gi|209541658|gb|ACI59887.1| ATP-dependent zinc metallopeptidase - cell division protein
[Ureaplasma urealyticum serovar 10 str. ATCC 33699]
Length = 715
Score = 41.2 bits (95), Expect = 0.75, Method: Composition-based stats.
Identities = 29/182 (15%), Positives = 51/182 (28%), Gaps = 24/182 (13%)
Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY-----VINAEA 535
E++D+ G + + + + G G+GK+ + K G +
Sbjct: 253 EIVDFLKEPKKYVAAGA-RIPKGVMLYGPPGTGKTL---IAKAVAGEANVPFFQTTGSSF 308
Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595
D + R I+ I E + + +T T
Sbjct: 309 EDTFVGVGARRVRELFEKARKSAPAIIFIDEIDSVAKKRG---NSLTAVQDQTINQLLSE 365
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWR--RYIVIPFDKPIANRDASFAQKLETKYTL 653
+S + L DDA R R FD+ I+ + LE + L
Sbjct: 366 LDGFDTSSGVIVMAATNRLDT--LDDAILRPGR-----FDRQIS---VNLPDILEREQIL 415
Query: 654 EA 655
Sbjct: 416 RI 417
>gi|225550494|ref|ZP_03771443.1| ATP-dependent metalloprotease FtsH [Ureaplasma urealyticum serovar
2 str. ATCC 27814]
gi|225379648|gb|EEH02010.1| ATP-dependent metalloprotease FtsH [Ureaplasma urealyticum serovar
2 str. ATCC 27814]
Length = 721
Score = 41.2 bits (95), Expect = 0.75, Method: Composition-based stats.
Identities = 29/182 (15%), Positives = 51/182 (28%), Gaps = 24/182 (13%)
Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY-----VINAEA 535
E++D+ G + + + + G G+GK+ + K G +
Sbjct: 253 EIVDFLKEPKKYVAAGA-RIPKGVMLYGPPGTGKTL---IAKAVAGEANVPFFQTTGSSF 308
Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595
D + R I+ I E + + +T T
Sbjct: 309 EDTFVGVGARRVRELFEKARKSAPAIIFIDEIDSVAKKRG---NSLTAVQDQTINQLLSE 365
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWR--RYIVIPFDKPIANRDASFAQKLETKYTL 653
+S + L DDA R R FD+ I+ + LE + L
Sbjct: 366 LDGFDTSSGVIVMAATNRLDT--LDDAILRPGR-----FDRQIS---VNLPDILEREQIL 415
Query: 654 EA 655
Sbjct: 416 RI 417
>gi|188024383|ref|ZP_02997049.1| ATP-dependent metalloprotease FtsH [Ureaplasma urealyticum serovar
7 str. ATCC 27819]
gi|188018651|gb|EDU56691.1| ATP-dependent metalloprotease FtsH [Ureaplasma urealyticum serovar
7 str. ATCC 27819]
Length = 721
Score = 41.2 bits (95), Expect = 0.75, Method: Composition-based stats.
Identities = 29/182 (15%), Positives = 51/182 (28%), Gaps = 24/182 (13%)
Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY-----VINAEA 535
E++D+ G + + + + G G+GK+ + K G +
Sbjct: 253 EIVDFLKEPKKYVAAGA-RIPKGVMLYGPPGTGKTL---IAKAVAGEANVPFFQTTGSSF 308
Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595
D + R I+ I E + + +T T
Sbjct: 309 EDTFVGVGARRVRELFEKARKSAPAIIFIDEIDSVAKKRG---NSLTAVQDQTINQLLSE 365
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWR--RYIVIPFDKPIANRDASFAQKLETKYTL 653
+S + L DDA R R FD+ I+ + LE + L
Sbjct: 366 LDGFDTSSGVIVMAATNRLDT--LDDAILRPGR-----FDRQIS---VNLPDILEREQIL 415
Query: 654 EA 655
Sbjct: 416 RI 417
>gi|185178797|ref|ZP_02964592.1| ATP-dependent metalloprotease FtsH [Ureaplasma urealyticum serovar
5 str. ATCC 27817]
gi|188518696|ref|ZP_03004123.1| ATP-dependent metalloprotease FtsH [Ureaplasma urealyticum serovar
11 str. ATCC 33695]
gi|225551274|ref|ZP_03772220.1| ATP-dependent metalloprotease FtsH [Ureaplasma urealyticum serovar
8 str. ATCC 27618]
gi|184209420|gb|EDU06463.1| ATP-dependent metalloprotease FtsH [Ureaplasma urealyticum serovar
5 str. ATCC 27817]
gi|188997682|gb|EDU66779.1| ATP-dependent metalloprotease FtsH [Ureaplasma urealyticum serovar
11 str. ATCC 33695]
gi|225379089|gb|EEH01454.1| ATP-dependent metalloprotease FtsH [Ureaplasma urealyticum serovar
8 str. ATCC 27618]
Length = 721
Score = 41.2 bits (95), Expect = 0.75, Method: Composition-based stats.
Identities = 29/182 (15%), Positives = 51/182 (28%), Gaps = 24/182 (13%)
Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY-----VINAEA 535
E++D+ G + + + + G G+GK+ + K G +
Sbjct: 253 EIVDFLKEPKKYVAAGA-RIPKGVMLYGPPGTGKTL---IAKAVAGEANVPFFQTTGSSF 308
Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595
D + R I+ I E + + +T T
Sbjct: 309 EDTFVGVGARRVRELFEKARKSAPAIIFIDEIDSVAKKRG---NSLTAVQDQTINQLLSE 365
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWR--RYIVIPFDKPIANRDASFAQKLETKYTL 653
+S + L DDA R R FD+ I+ + LE + L
Sbjct: 366 LDGFDTSSGVIVMAATNRLDT--LDDAILRPGR-----FDRQIS---VNLPDILEREQIL 415
Query: 654 EA 655
Sbjct: 416 RI 417
>gi|171920576|ref|ZP_02695391.2| ATP-dependent metalloprotease FtsH [Ureaplasma urealyticum serovar
13 str. ATCC 33698]
gi|188524128|ref|ZP_03004201.1| ATP-dependent metalloprotease FtsH [Ureaplasma urealyticum serovar
12 str. ATCC 33696]
gi|195867456|ref|ZP_03079460.1| putative Cell division protease FtsH homolog [Ureaplasma
urealyticum serovar 9 str. ATCC 33175]
gi|198273574|ref|ZP_03206110.1| putative Cell division protease FtsH homolog [Ureaplasma
urealyticum serovar 4 str. ATCC 27816]
gi|171903280|gb|EDT49569.1| ATP-dependent metalloprotease FtsH [Ureaplasma urealyticum serovar
13 str. ATCC 33698]
gi|195659945|gb|EDX53325.1| ATP-dependent metalloprotease FtsH [Ureaplasma urealyticum serovar
12 str. ATCC 33696]
gi|195660932|gb|EDX54185.1| putative Cell division protease FtsH homolog [Ureaplasma
urealyticum serovar 9 str. ATCC 33175]
gi|198250094|gb|EDY74874.1| putative Cell division protease FtsH homolog [Ureaplasma
urealyticum serovar 4 str. ATCC 27816]
Length = 721
Score = 41.2 bits (95), Expect = 0.75, Method: Composition-based stats.
Identities = 29/182 (15%), Positives = 51/182 (28%), Gaps = 24/182 (13%)
Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY-----VINAEA 535
E++D+ G + + + + G G+GK+ + K G +
Sbjct: 253 EIVDFLKEPKKYVAAGA-RIPKGVMLYGPPGTGKTL---IAKAVAGEANVPFFQTTGSSF 308
Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595
D + R I+ I E + + +T T
Sbjct: 309 EDTFVGVGARRVRELFEKARKSAPAIIFIDEIDSVAKKRG---NSLTAVQDQTINQLLSE 365
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWR--RYIVIPFDKPIANRDASFAQKLETKYTL 653
+S + L DDA R R FD+ I+ + LE + L
Sbjct: 366 LDGFDTSSGVIVMAATNRLDT--LDDAILRPGR-----FDRQIS---VNLPDILEREQIL 415
Query: 654 EA 655
Sbjct: 416 RI 417
>gi|171920308|ref|ZP_02691027.2| ATP-dependent metalloprotease FtsH [Ureaplasma parvum serovar 1
str. ATCC 27813]
gi|171902723|gb|EDT49012.1| ATP-dependent metalloprotease FtsH [Ureaplasma parvum serovar 1
str. ATCC 27813]
Length = 721
Score = 41.2 bits (95), Expect = 0.75, Method: Composition-based stats.
Identities = 29/182 (15%), Positives = 51/182 (28%), Gaps = 24/182 (13%)
Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY-----VINAEA 535
E++D+ G + + + + G G+GK+ + K G +
Sbjct: 253 EIVDFLKEPKKYVAAGA-RIPKGVMLYGPPGTGKTL---IAKAVAGEANVPFFQTTGSSF 308
Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595
D + R I+ I E + + +T T
Sbjct: 309 EDTFVGVGARRVRELFEKARKSAPAIIFIDEIDSVAKKRG---NSLTAVQDQTINQLLSE 365
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWR--RYIVIPFDKPIANRDASFAQKLETKYTL 653
+S + L DDA R R FD+ I+ + LE + L
Sbjct: 366 LDGFDTSSGVIVMAATNRLDT--LDDAILRPGR-----FDRQIS---VNLPDILEREQIL 415
Query: 654 EA 655
Sbjct: 416 RI 417
>gi|123202912|ref|XP_001284201.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121845204|gb|EAX71271.1| hypothetical protein TVAG_023620 [Trichomonas vaginalis G3]
Length = 211
Score = 41.2 bits (95), Expect = 0.75, Method: Composition-based stats.
Identities = 35/209 (16%), Positives = 66/209 (31%), Gaps = 19/209 (9%)
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGN 595
M N GK N S+ + +++ +E D +N+ +K + Y +
Sbjct: 1 MTNLENICGKFNSSIENMK---LIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKD 57
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
+ + N D RRY+V+ +D + L T +
Sbjct: 58 QRVCENVANFIMVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTKYFDDLAETLTSDF 113
Query: 656 KKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
+ IP + E + Y+ +I++ + + SL
Sbjct: 114 YNHLFSYFMTLDISKFNPRQIPHTEERQTLLEANKS-VYELFIEE----SDFECLDEKSL 168
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLK 743
Y +Y ++ Y S RT N+K
Sbjct: 169 YDEYKQYCQE---YGYMPASKRTFLANVK 194
>gi|15829244|ref|NP_326604.1| ABC transporter ATP-binding protein [Mycoplasma pulmonis UAB CTIP]
gi|14090188|emb|CAC13946.1| ABC TRANSPORTER ATP-BINDING PROTEIN [Mycoplasma pulmonis]
Length = 301
Score = 41.2 bits (95), Expect = 0.75, Method: Composition-based stats.
Identities = 22/106 (20%), Positives = 37/106 (34%), Gaps = 15/106 (14%)
Query: 503 FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIV 562
F+ + G GSGKSTL+NLI D++ N +N L + R+
Sbjct: 99 FVILYGKSGSGKSTLLNLISGL------DRPTKGDVVVNDVNLPYLSNNELTKF--RRLN 150
Query: 563 IISETNENDEINAAKIKQMTGGDCM-TARLNYGNTYSESPASFTPF 607
+ ++ +TG D + T + + F
Sbjct: 151 VSFIFQSY-----NLLENITGFDNVETGDYLQKDKSKKM-DIHKLF 190
>gi|13357662|ref|NP_077936.1| ATP-dependent zinc metallopeptidase - cell division protein
[Ureaplasma parvum serovar 3 str. ATCC 700970]
gi|170761853|ref|YP_001752188.1| ATP-dependent zinc metallopeptidase - cell division protein
[Ureaplasma parvum serovar 3 str. ATCC 27815]
gi|183508714|ref|ZP_02958198.1| ATP-dependent zinc metallopeptidase - cell division protein
[Ureaplasma parvum serovar 14 str. ATCC 33697]
gi|186701860|ref|ZP_02971520.1| ATP-dependent zinc metallopeptidase - cell division protein
[Ureaplasma parvum serovar 6 str. ATCC 27818]
gi|310946770|sp|B1AI94|FTSH_UREP2 RecName: Full=ATP-dependent zinc metalloprotease FtsH
gi|11356749|pir||D82934 ATP-dependent zinc metallopeptidase, cell division protein UU105
[imported] - Ureaplasma urealyticum
gi|6899060|gb|AAF30511.1|AE002110_9 ATP-dependent zinc metallopeptidase - cell division protein
[Ureaplasma parvum serovar 3 str. ATCC 700970]
gi|168827430|gb|ACA32692.1| ATP-dependent zinc metallopeptidase - cell division protein
[Ureaplasma parvum serovar 3 str. ATCC 27815]
gi|182675637|gb|EDT87542.1| ATP-dependent zinc metallopeptidase - cell division protein
[Ureaplasma parvum serovar 14 str. ATCC 33697]
gi|186701162|gb|EDU19444.1| ATP-dependent zinc metallopeptidase - cell division protein
[Ureaplasma parvum serovar 6 str. ATCC 27818]
Length = 721
Score = 41.2 bits (95), Expect = 0.75, Method: Composition-based stats.
Identities = 29/182 (15%), Positives = 51/182 (28%), Gaps = 24/182 (13%)
Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY-----VINAEA 535
E++D+ G + + + + G G+GK+ + K G +
Sbjct: 253 EIVDFLKEPKKYVAAGA-RIPKGVMLYGPPGTGKTL---IAKAVAGEANVPFFQTTGSSF 308
Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595
D + R I+ I E + + +T T
Sbjct: 309 EDTFVGVGARRVRELFEKARKSAPAIIFIDEIDSVAKKRG---NSLTAVQDQTINQLLSE 365
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWR--RYIVIPFDKPIANRDASFAQKLETKYTL 653
+S + L DDA R R FD+ I+ + LE + L
Sbjct: 366 LDGFDTSSGVIVMAATNRLDT--LDDAILRPGR-----FDRQIS---VNLPDILEREQIL 415
Query: 654 EA 655
Sbjct: 416 RI 417
>gi|156082435|ref|XP_001608702.1| ATPase, AAA family domain containing protein [Babesia bovis T2Bo]
gi|154795951|gb|EDO05134.1| ATPase, AAA family domain containing protein [Babesia bovis]
Length = 671
Score = 41.2 bits (95), Expect = 0.76, Method: Composition-based stats.
Identities = 31/150 (20%), Positives = 51/150 (34%), Gaps = 23/150 (15%)
Query: 495 LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAG---KANP 551
G +A + + + G G+GK+TL I G S I E+ KA
Sbjct: 419 TGLLRAPKGVLLFGPPGTGKTTLAKWIANVAGAT-CFEVSPSSITSKYHGESESIIKALF 477
Query: 552 SLIRLMGSRIVIISETNENDEINAAKIKQMTGGDC-MTARLNYG------NTYSESPASF 604
+ I+ E + A + + +G + ++ R+ +S
Sbjct: 478 KVAAFDQPSIIFFDEVD-------ALLGKRSGNEPDLSIRMKNQLLQMMDGLHSGDRNGV 530
Query: 605 TPFIVPNKHLFVRNPDDAWWRRY---IVIP 631
I V DDA RR+ I+IP
Sbjct: 531 VVVIAATNRPMV--LDDAALRRFSKRILIP 558
>gi|123472584|ref|XP_001319485.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121902269|gb|EAY07262.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 211
Score = 41.2 bits (95), Expect = 0.76, Method: Composition-based stats.
Identities = 37/209 (17%), Positives = 67/209 (32%), Gaps = 19/209 (9%)
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGN 595
M N GK N S+ + +++ +E D +N+ +K + Y +
Sbjct: 1 MTNIENICGKFNSSIENMK---LIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKD 57
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
+ + N D RRY+V+ +D + L T +
Sbjct: 58 QRVCENVANFIMVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDF 113
Query: 656 KKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
+ IP + E + Y+ +ID+ + + SL
Sbjct: 114 YNHLFSYFMTLDISKFNPRQIPHTEERQTLLEANKS-VYELFIDET----DFECLDERSL 168
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLK 743
SY +Y ++ Y S RT N+K
Sbjct: 169 YDSYKQYCQE---YGYMTASKRTFLANVK 194
>gi|123184152|ref|XP_001281041.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121834756|gb|EAX68111.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 202
Score = 41.2 bits (95), Expect = 0.76, Method: Composition-based stats.
Identities = 37/209 (17%), Positives = 67/209 (32%), Gaps = 19/209 (9%)
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGN 595
M N GK N S+ + +++ +E D +N+ +K + Y +
Sbjct: 1 MTNIENICGKFNSSIENMK---LIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKD 57
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
+ + N D RRY+V+ +D + L T +
Sbjct: 58 QRVCENVANFIMVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDF 113
Query: 656 KKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
+ IP + E + Y+ +ID+ + + SL
Sbjct: 114 YNHLFSYFMTLDISKFNPRQIPHTEERQTLLEANKS-VYELFIDET----DFECLDERSL 168
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLK 743
SY +Y ++ Y S RT N+K
Sbjct: 169 YDSYKQYCQE---YGYMTASKRTFLANVK 194
>gi|300022615|ref|YP_003755226.1| hypothetical protein Hden_1091 [Hyphomicrobium denitrificans ATCC
51888]
gi|299524436|gb|ADJ22905.1| hypothetical protein Hden_1091 [Hyphomicrobium denitrificans ATCC
51888]
Length = 442
Score = 41.2 bits (95), Expect = 0.77, Method: Composition-based stats.
Identities = 11/90 (12%), Positives = 30/90 (33%), Gaps = 11/90 (12%)
Query: 690 TDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIG 749
+ + + + ++ + + L + Y + + + ++ + + + G
Sbjct: 352 ENNTERFYKENVEVRDGSSVTATELYEDYCSWCDSKN---KEPAALPSFAREFAELG--- 405
Query: 750 GIKREKIEKEWKSKRIIKGLKLKPAFESVD 779
K EK R I G+ LK +
Sbjct: 406 ----VKKEKVAGRVRYI-GIALKSDMALEE 430
>gi|154301803|ref|XP_001551313.1| hypothetical protein BC1G_10053 [Botryotinia fuckeliana B05.10]
gi|150855715|gb|EDN30907.1| hypothetical protein BC1G_10053 [Botryotinia fuckeliana B05.10]
Length = 558
Score = 41.2 bits (95), Expect = 0.77, Method: Composition-based stats.
Identities = 37/227 (16%), Positives = 67/227 (29%), Gaps = 22/227 (9%)
Query: 350 KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSL 409
K T++ F+ + K F + +N EN AK
Sbjct: 45 KPTSTQKPFVSNFFSTPAVKKAALHTTPKIEPVSTPNFQQKVQNENTIENRTAKRQDDGS 104
Query: 410 EAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF 469
+GS+ D S + ++ +D P K+ + +
Sbjct: 105 ASGSLTVERKRSFDDSRTEIQMENETVD-------PPAKKNKTSAFQKVAPLAERMRPRS 157
Query: 470 LDLVSGYFESEEVMDYFTRCVG-MALLGGNKAQR---FIHIRGVGGSGKSTLMNLIKYAF 525
LD V G VG +L Q + + G G+GK+T+ +
Sbjct: 158 LDEVCG-----------QELVGPQGVLRSLIEQDRVPSMILWGGAGTGKTTIARCVATMV 206
Query: 526 GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDE 572
G+++V S + +A L I+ E + +
Sbjct: 207 GSRFVEINSTSSGVGEVKKIFTEARGELGLTGRKTIIFCDEIHRFSK 253
>gi|123239292|ref|XP_001287577.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121855262|gb|EAX74647.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 211
Score = 41.2 bits (95), Expect = 0.77, Method: Composition-based stats.
Identities = 37/209 (17%), Positives = 66/209 (31%), Gaps = 19/209 (9%)
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGN 595
M N GK N S+ + +++ +E D +N+ +K + Y +
Sbjct: 1 MTNLENICGKFNSSIENMK---LIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKD 57
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
+ + N D RRY+V+ +D + L T
Sbjct: 58 QRVCENVANFIMVSNNVVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTPNF 113
Query: 656 KKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
+ IP + E + Y+ +ID+ + + SL
Sbjct: 114 YNHLFSYFMTLDISNFNPRQIPHTEERQTLLEANKS-VYELFIDET----DFECLDERSL 168
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLK 743
SY +Y ++ Y S RT N+K
Sbjct: 169 YDSYKQYCQE---YGYMAASKRTFLANVK 194
>gi|302496375|ref|XP_003010189.1| hypothetical protein ARB_03541 [Arthroderma benhamiae CBS 112371]
gi|291173730|gb|EFE29549.1| hypothetical protein ARB_03541 [Arthroderma benhamiae CBS 112371]
Length = 426
Score = 41.2 bits (95), Expect = 0.78, Method: Composition-based stats.
Identities = 36/210 (17%), Positives = 74/210 (35%), Gaps = 30/210 (14%)
Query: 439 ETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLG-- 496
+ G++ + ++L +T+ T ++ ++ +E+++ V L
Sbjct: 86 KNGKRRQRKEKLVLTQYEQTIAMDVVAPEDIPVTFEDIGGLDEIIEELKESVIYPLTMPQ 145
Query: 497 --GNKAQRF-----IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAG-- 547
+ + + G G GK+ L + + G + IN S + + ++
Sbjct: 146 LYRTTSSLLSAPSGVLLYGPPGCGKTMLAKALAHESGACF-INLHISTLTEKWYGDSNKL 204
Query: 548 -KANPSLIRLMGSRIVIISETN-------ENDEINAAKIKQ--MTGGDCMTARLNYGNTY 597
A SL R + IV I E + + + +K MT D +T+ G
Sbjct: 205 VNAVFSLARKLEPSIVFIDEIDAVLGTRRSGEHEASGMVKAEFMTHWDGLTSANAMGQ-- 262
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRY 627
P N +++ D+A RR
Sbjct: 263 ---PQRVLILGATN---RIQDIDEAILRRM 286
>gi|229830047|ref|ZP_04456116.1| hypothetical protein GCWU000342_02153 [Shuttleworthia satelles DSM
14600]
gi|229791345|gb|EEP27459.1| hypothetical protein GCWU000342_02153 [Shuttleworthia satelles DSM
14600]
Length = 404
Score = 41.2 bits (95), Expect = 0.78, Method: Composition-based stats.
Identities = 17/100 (17%), Positives = 33/100 (33%), Gaps = 14/100 (14%)
Query: 484 DYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF-G----NQYVINAEASDI 538
Y R + + G+ SGKS +++LIK G + I+ +
Sbjct: 6 QYMQRI-----RPFIGNELIKILTGMRRSGKSVMLDLIKDELRGQGISDDNFISFNFESL 60
Query: 539 MQNRPPEA----GKANPSLIRLMGSRIVIISETNENDEIN 574
+ A G+ + + + G + E E +
Sbjct: 61 ANTKFCNARALYGELSRRIASISGKSYLFFDEIQEVTDWE 100
>gi|123319149|ref|XP_001293155.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121869632|gb|EAX80225.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 211
Score = 40.9 bits (94), Expect = 0.78, Method: Composition-based stats.
Identities = 37/210 (17%), Positives = 66/210 (31%), Gaps = 19/210 (9%)
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGN 595
M N GK N S+ + +++ +E D +N+ +K + Y +
Sbjct: 1 MTNLENICGKFNSSIENMK---LIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKD 57
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
+ + N D RRY+V+ +D + L T
Sbjct: 58 QRVCENVANFIMVSNNVVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTPNF 113
Query: 656 KKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
+ IP + E + Y+ +ID+ + + SL
Sbjct: 114 YNHLFSYFMTLDISKFNPRQIPHTEERQTLLEANKS-VYELFIDET----DFECLDERSL 168
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLKQ 744
SY +Y ++ Y S RT N+K
Sbjct: 169 YDSYKQYCQE---YGYMAASKRTFLANVKN 195
>gi|167039882|ref|YP_001662867.1| virulence-associated E family protein [Thermoanaerobacter sp. X514]
gi|307724794|ref|YP_003904545.1| virulence-associated E family protein [Thermoanaerobacter sp. X513]
gi|166854122|gb|ABY92531.1| virulence-associated E family protein [Thermoanaerobacter sp. X514]
gi|307581855|gb|ADN55254.1| virulence-associated E family protein [Thermoanaerobacter sp. X513]
Length = 781
Score = 40.9 bits (94), Expect = 0.79, Method: Composition-based stats.
Identities = 53/312 (16%), Positives = 102/312 (32%), Gaps = 34/312 (10%)
Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542
+ L G K + + G G GKSTL I G+ + + SD
Sbjct: 485 RKTLCAAISRVLTPGIKFDSMLVLNGPQGVGKSTL---IAKLGGDWFSDSLSLSDTKDKT 541
Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602
E +L G I+ I E + ++ R ++G +
Sbjct: 542 AAE---------KLQGYWILEIGELAGLKKAEVETLRSFLSRQNDIYRASFGKRATPHLR 592
Query: 603 SFTPFIVPN-KHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLK 661
F N + ++R+ RR+ + + Q + EA +
Sbjct: 593 QCVFFGTTNAEKGYLRDTTGN--RRFWPVKTPGNGTKKSWQLKQDEILQIWAEALTYVKA 650
Query: 662 GVKAYISKGLDVDIPEVCLKAKEEERQ--GTDTYQAWIDDCCDIGENLWEESHSLAKSYS 719
G K Y+ L+ AKEE+R+ +D + + + D+ ++ L +
Sbjct: 651 GEKLYLDASLE-------KLAKEEQREAMESDEREGLVREYLDMLLPEDWDTMDLYER-R 702
Query: 720 EYRE--QELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFES 777
Y + R + R N++ I E K+ + R + G ++ S
Sbjct: 703 AYINGTEFGESQRVGVWKRKSVSNME-------IWCECFGKDRANLRRVDGNEISAIMAS 755
Query: 778 VDDNSNIIDFKR 789
+ + ++ +R
Sbjct: 756 IGGWTGLVKKER 767
>gi|116696318|ref|YP_841894.1| putative helicase [Ralstonia eutropha H16]
gi|113530817|emb|CAJ97164.1| putative helicase [Ralstonia eutropha H16]
Length = 668
Score = 40.9 bits (94), Expect = 0.79, Method: Composition-based stats.
Identities = 17/74 (22%), Positives = 23/74 (31%), Gaps = 8/74 (10%)
Query: 201 NNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTY 260
N + LSC G EWI + MA WS+ Y
Sbjct: 2 ENGHFEQGRARDALSCLDAGCSRG---EWIRLGMAAKAAGLSFED----FHLWSQNAPNY 54
Query: 261 D-EENFNYKWDTFD 273
E + W++FD
Sbjct: 55 KGERDCLTAWNSFD 68
>gi|304386170|ref|ZP_07368503.1| ABC superfamily ATP binding cassette transporter, ABC protein
[Pediococcus acidilactici DSM 20284]
gi|304327527|gb|EFL94754.1| ABC superfamily ATP binding cassette transporter, ABC protein
[Pediococcus acidilactici DSM 20284]
Length = 475
Score = 40.9 bits (94), Expect = 0.80, Method: Composition-based stats.
Identities = 24/120 (20%), Positives = 37/120 (30%), Gaps = 10/120 (8%)
Query: 452 ITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGG 511
+T T P + + L L F E Y + V + Q I + G G
Sbjct: 237 LTTRTAFP-IPNANAAAILKL--QDFGIENGGRYLLQAVQTSF----PKQHLILLTGENG 289
Query: 512 SGKSTLMNLIKYAF---GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN 568
SGKSTL I G + N S + + ++ + E +
Sbjct: 290 SGKSTLFEAIARLHPYQGKLFYDNRPLSQFNARTWAKTATVVFQDSEMQFLKMTVTEEID 349
>gi|123337149|ref|XP_001294312.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121872111|gb|EAX81382.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 211
Score = 40.9 bits (94), Expect = 0.80, Method: Composition-based stats.
Identities = 37/209 (17%), Positives = 67/209 (32%), Gaps = 19/209 (9%)
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGN 595
M N GK N S+ + +++ +E D +N+ +K + Y +
Sbjct: 1 MTNLENICGKFNSSIENMK---LIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKD 57
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
+ + N D RRY+V+ +D + L T +
Sbjct: 58 QRVCENVANFIMVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDF 113
Query: 656 KKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
+ IP + E + Y+ +ID+ + + SL
Sbjct: 114 YNHLFSYFMTLDISKFNPRQIPHTEERQTLLEANKS-VYELFIDET----DFECLDERSL 168
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLK 743
SY +Y ++ Y S RT N+K
Sbjct: 169 YDSYKQYCQE---YGYMTASKRTFLANVK 194
>gi|123275204|ref|XP_001289903.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121861630|gb|EAX76973.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 213
Score = 40.9 bits (94), Expect = 0.80, Method: Composition-based stats.
Identities = 37/209 (17%), Positives = 67/209 (32%), Gaps = 19/209 (9%)
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGN 595
M N GK N S+ + +++ +E D +N+ +K + Y +
Sbjct: 1 MTNLENICGKFNSSIENMK---LIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKD 57
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
+ + N D RRY+V+ +D + L T +
Sbjct: 58 QRVCENVANFIMVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDF 113
Query: 656 KKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
+ IP + E + Y+ +ID+ + + SL
Sbjct: 114 YNHLFSYFMTLDISKFNPRQIPHTEERQTLLEANKS-VYELFIDET----DFECLDERSL 168
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLK 743
SY +Y ++ Y S RT N+K
Sbjct: 169 YDSYKQYCQE---YGYMTASKRTFLANVK 194
>gi|123225083|ref|XP_001285735.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121849888|gb|EAX72805.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 211
Score = 40.9 bits (94), Expect = 0.80, Method: Composition-based stats.
Identities = 37/209 (17%), Positives = 67/209 (32%), Gaps = 19/209 (9%)
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGN 595
M N GK N S+ + +++ +E D +N+ +K + Y +
Sbjct: 1 MTNLENICGKFNSSIENMK---LIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKD 57
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
+ + N D RRY+V+ +D + L T +
Sbjct: 58 QRVCENVANFIMVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDF 113
Query: 656 KKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
+ IP + E + Y+ +ID+ + + SL
Sbjct: 114 YNHLFSYFMTLDISKFNPRQIPHTEERQTLLEANKS-VYELFIDET----DFECLDERSL 168
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLK 743
SY +Y ++ Y S RT N+K
Sbjct: 169 YDSYKQYCQE---YGYMTASKRTFLANVK 194
>gi|123174757|ref|XP_001279883.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121830580|gb|EAX66953.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 210
Score = 40.9 bits (94), Expect = 0.80, Method: Composition-based stats.
Identities = 37/209 (17%), Positives = 67/209 (32%), Gaps = 19/209 (9%)
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGN 595
M N GK N S+ + +++ +E D +N+ +K + Y +
Sbjct: 1 MTNLENICGKFNSSIENMK---LIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKD 57
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
+ + N D RRY+V+ +D + L T +
Sbjct: 58 QRVCENVANFIMVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDF 113
Query: 656 KKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
+ IP + E + Y+ +ID+ + + SL
Sbjct: 114 YNHLFSYFMTLDISKFNPRQIPHTEERQTLLEANKS-VYELFIDET----DFECLDERSL 168
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLK 743
SY +Y ++ Y S RT N+K
Sbjct: 169 YDSYKQYCQE---YGYMTASKRTFLANVK 194
>gi|123169872|ref|XP_001279496.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121829217|gb|EAX66566.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 211
Score = 40.9 bits (94), Expect = 0.80, Method: Composition-based stats.
Identities = 37/209 (17%), Positives = 67/209 (32%), Gaps = 19/209 (9%)
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGN 595
M N GK N S+ + +++ +E D +N+ +K + Y +
Sbjct: 1 MTNLENICGKFNSSIENMK---LIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKD 57
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
+ + N D RRY+V+ +D + L T +
Sbjct: 58 QRVCENVANFIMVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDF 113
Query: 656 KKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
+ IP + E + Y+ +ID+ + + SL
Sbjct: 114 YNHLFSYFMTLDISKFNPRQIPHTEERQTLLEANKS-VYELFIDET----DFECLDERSL 168
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLK 743
SY +Y ++ Y S RT N+K
Sbjct: 169 YDSYKQYCQE---YGYMTASKRTFLANVK 194
>gi|123155901|ref|XP_001278334.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121824860|gb|EAX65404.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 201
Score = 40.9 bits (94), Expect = 0.80, Method: Composition-based stats.
Identities = 37/209 (17%), Positives = 67/209 (32%), Gaps = 19/209 (9%)
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGN 595
M N GK N S+ + +++ +E D +N+ +K + Y +
Sbjct: 1 MTNLENICGKFNSSIENMK---LIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKD 57
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
+ + N D RRY+V+ +D + L T +
Sbjct: 58 QRVCENVANFIMVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDF 113
Query: 656 KKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
+ IP + E + Y+ +ID+ + + SL
Sbjct: 114 YNHLFSYFMTLDISKFNPRQIPHTEERQTLLEANKS-VYELFIDET----DFECLDERSL 168
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLK 743
SY +Y ++ Y S RT N+K
Sbjct: 169 YDSYKQYCQE---YGYMTASKRTFLANVK 194
>gi|159036858|ref|YP_001536111.1| bifunctional DNA primase/polymerase [Salinispora arenicola CNS-205]
gi|157915693|gb|ABV97120.1| Bifunctional DNA primase/polymerase [Salinispora arenicola CNS-205]
Length = 290
Score = 40.9 bits (94), Expect = 0.81, Method: Composition-based stats.
Identities = 24/119 (20%), Positives = 38/119 (31%), Gaps = 8/119 (6%)
Query: 46 IDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIP 105
ID P G + D+D ++ + L I + +
Sbjct: 68 IDTAPRGQLALRTGRAS-DVVVLDVDPRNGGHRGLATLVADGLAPRTAYVITGSDGLHLF 126
Query: 106 FRMNKEGIKKKKTTESTQGHLDILGCGQYFV-AYNIHPKTKKEYTWTTPPHRFKVEDTP 163
+R G G +DI G Y V +IH +T + Y W R V++ P
Sbjct: 127 YRH--PGTPLAAKVPGVPG-VDIKTDGGYVVLPPSIHQRTGRPYRWAD---RGPVQEMP 179
>gi|123418305|ref|XP_001305293.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121886804|gb|EAX92363.1| hypothetical protein TVAG_215890 [Trichomonas vaginalis G3]
Length = 194
Score = 40.9 bits (94), Expect = 0.82, Method: Composition-based stats.
Identities = 30/189 (15%), Positives = 57/189 (30%), Gaps = 16/189 (8%)
Query: 560 RIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV 616
++++ +E D +N+ +K + Y + + + N
Sbjct: 2 KLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMK 61
Query: 617 RNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-I 675
D RRY+V+ +D + L T + I
Sbjct: 62 LESSD---RRYVVVR-TSEAHMQDTEYFDDLAETLTPNFYNHLFSYFMTLDISKFNPRQI 117
Query: 676 PEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIST 735
P + E + Y+ +ID+ + SL Y +Y ++ Y S
Sbjct: 118 PYTEERQTLLEANKS-VYELFIDETNFECLDER----SLYDEYKQYCQE---YGYMAASK 169
Query: 736 RTVTLNLKQ 744
RT N+K
Sbjct: 170 RTFLANVKN 178
>gi|123202727|ref|XP_001284149.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121845071|gb|EAX71219.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 194
Score = 40.9 bits (94), Expect = 0.82, Method: Composition-based stats.
Identities = 31/188 (16%), Positives = 60/188 (31%), Gaps = 16/188 (8%)
Query: 560 RIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV 616
++++ +E D +N+ +K + Y + + + N
Sbjct: 2 KLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNTVPMK 61
Query: 617 RNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-I 675
D RRY+V+ +D + L T + + I
Sbjct: 62 LESSD---RRYVVVR-TSDSHMQDTEYFDDLAESLTSDFYNHLFSYFMTLDISKFNPRQI 117
Query: 676 PEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIST 735
P + E + Y+ +ID+ + + SL SY +Y ++ Y S
Sbjct: 118 PHTEERQTLLEANKS-VYELFIDET----DFECLDERSLYDSYKQYCQE---YGYMAASK 169
Query: 736 RTVTLNLK 743
RT N+K
Sbjct: 170 RTFLANVK 177
>gi|326955330|gb|AEA29023.1| Bifunctional DNA primase/polymerase [Pseudonocardia dioxanivorans
CB1190]
Length = 296
Score = 40.9 bits (94), Expect = 0.83, Method: Composition-based stats.
Identities = 26/149 (17%), Positives = 45/149 (30%), Gaps = 28/149 (18%)
Query: 12 QAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEK-IDKLPAC---GFGFVCGVGEQPLYA 67
+A F + P+ K P + +W+++ + I+ G V G G L
Sbjct: 15 RAAAERFPIFPVAPFGKTPA-VRRWQDRATQDNRVIEAWYRQAPFNIGLVTGKG---LVV 70
Query: 68 FDIDSK---------------DEKTANTFKDTFEILHGTPIVRIGQKPKIL--IPFRMNK 110
D+D E A ++T E G + P + F ++
Sbjct: 71 VDLDVARGGDGRSGESGELSGREHLARIARETGEEYPGDTYTV--RTPSGGDHLYFAVSD 128
Query: 111 EGIKKKKTTESTQGHLDILGCGQYFVAYN 139
+ +D G Y VA
Sbjct: 129 REFLRNTGGRLG-ARIDTRANGGYIVAAG 156
>gi|123196889|ref|XP_001283654.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121843557|gb|EAX70724.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 211
Score = 40.9 bits (94), Expect = 0.83, Method: Composition-based stats.
Identities = 37/209 (17%), Positives = 67/209 (32%), Gaps = 19/209 (9%)
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGN 595
M N GK N S+ + +++ +E D +N+ +K + Y +
Sbjct: 1 MTNLENICGKFNSSIENMK---LIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKD 57
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
+ + N D RRY+V+ +D + L T +
Sbjct: 58 QRVCENVANFIMVSNNTVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDF 113
Query: 656 KKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
+ IP + E + Y+ +ID+ + + SL
Sbjct: 114 YNHLFSYFMTLDISKFNPRQIPHTEERQTLLEANKS-VYELFIDET----DFECLDERSL 168
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLK 743
SY +Y ++ Y S RT N+K
Sbjct: 169 YDSYKQYCQE---YGYMTASKRTFLANVK 194
>gi|328948998|ref|YP_004366335.1| hypothetical protein Tresu_2169 [Treponema succinifaciens DSM 2489]
gi|328449322|gb|AEB15038.1| hypothetical protein Tresu_2169 [Treponema succinifaciens DSM 2489]
Length = 583
Score = 40.9 bits (94), Expect = 0.84, Method: Composition-based stats.
Identities = 24/155 (15%), Positives = 49/155 (31%), Gaps = 22/155 (14%)
Query: 484 DYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP 543
Y + + + F + G+ +GK+TL+ I Y + I N
Sbjct: 101 RYIYEVIKNFIYNETHDKVF-ILYGLRRTGKTTLVRQIIYNMLESNFSKSVFIQINSNNT 159
Query: 544 PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPAS 603
+ ++ G + V I E D + + + + + +
Sbjct: 160 LSDVNKDLKVLEAKGYKYVFIDEVT-------------LMDDFIDGAALFSDVF--ATSG 204
Query: 604 FTPFIVPNKHL-FVRNPDDAWWRRYIV-----IPF 632
+ L F+ + D+ + R I+ IPF
Sbjct: 205 MKIVLSGTDSLGFIFSEDEQLYDRCILLHTTFIPF 239
>gi|302422698|ref|XP_003009179.1| RNase3 domain-containing protein [Verticillium albo-atrum VaMs.102]
gi|261352325|gb|EEY14753.1| RNase3 domain-containing protein [Verticillium albo-atrum VaMs.102]
Length = 1510
Score = 40.9 bits (94), Expect = 0.84, Method: Composition-based stats.
Identities = 28/207 (13%), Positives = 61/207 (29%), Gaps = 22/207 (10%)
Query: 514 KSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI 573
KS ++ + G Y+ A+ + A + + + + +
Sbjct: 1203 KSI-ADVCEAMIGASYLSYADEGNFDMAFKSPALLRSAFKHPSYPRQFESVPNYQRLEFL 1261
Query: 574 NAAKIKQMTGGDCMTARLNYGNTYSESPA---SFTPFIVPNKHLFVRNPDDAWWRRYIVI 630
A + D + + P +V N L + + ++RR V+
Sbjct: 1262 GDALL------DMVCVDFLFRKFPDADPQWLTEHKMAMVSNHFLGSLSVELGFYRR--VL 1313
Query: 631 PFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGT 690
F +AN+ + L + GV + L+V P L +
Sbjct: 1314 HFSGVMANQIKDYVDALTHARQEAEAAAQISGVIS-QDYWLNVQHPPKFL---------S 1363
Query: 691 DTYQAWIDDCCDIGENLWEESHSLAKS 717
D +A+I + + + +
Sbjct: 1364 DVVEAYIGAIFVDSGYNYSQVQAFFEK 1390
>gi|123446973|ref|XP_001312232.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121894072|gb|EAX99302.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 211
Score = 40.9 bits (94), Expect = 0.84, Method: Composition-based stats.
Identities = 35/209 (16%), Positives = 66/209 (31%), Gaps = 19/209 (9%)
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGN 595
M N GK N S+ + +++ +E D +N+ +K + Y +
Sbjct: 1 MTNLENICGKFNSSIENMK---LIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKD 57
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
+ + N D RRY+V+ +D + L T +
Sbjct: 58 QRVCENVANFIMVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDF 113
Query: 656 KKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
+ IP + E + Y+ ++D+ + + SL
Sbjct: 114 YNHLFSYFMTLDISKFNPRQIPHTEERQTLLEANKS-VYELFVDETDFVSLDEK----SL 168
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLK 743
Y +Y ++ Y S RT N+K
Sbjct: 169 YNEYKQYCQE---YGYMAASKRTFLANVK 194
>gi|9635136|ref|NP_057843.1| regulatory protein E1 [Rabbit oral papillomavirus]
gi|7677344|gb|AAF67124.1|AF227240_4 regulatory protein E1 [rabbit oral papillomavirus]
Length = 616
Score = 40.9 bits (94), Expect = 0.84, Method: Composition-based stats.
Identities = 25/177 (14%), Positives = 57/177 (32%), Gaps = 25/177 (14%)
Query: 465 PSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524
+E + + F+ E + + L G + I I G SGKS +
Sbjct: 405 DWKEIVRFLR--FQGIEYIPFMISM--KKFLKGTPKKNCIVIYGPPNSGKSYFCMSLLRL 460
Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN-DEINAAKIKQMTG 583
G + + A K++ L L ++I ++ + + + ++
Sbjct: 461 MGGKVISFAN------------SKSHFWLQPLADAKIGLLDDATKPCWDFIDTYLRNALD 508
Query: 584 GDCMTARLNYGNTYS-ESPASFTPFIVPNKHLFVRNPDDAWW--RRYIVIPFDKPIA 637
G+ ++ + + P + N + V D + R + + F +
Sbjct: 509 GNPISVDCKHRAPTELKCPP---LLVTTN--VDVMGDDRWMYLHSRIVFLRFMNKMP 560
>gi|21910495|ref|NP_664763.1| hypothetical protein SpyM3_0959 [Streptococcus pyogenes MGAS315]
gi|21910877|ref|NP_665145.1| hypothetical protein SpyM3_1341 [Streptococcus pyogenes MGAS315]
gi|28876243|ref|NP_795448.1| hypothetical protein SpyM3_0959 [Streptococcus pyogenes phage
315.2]
gi|28876423|ref|NP_795618.1| hypothetical protein SpyM3_1341 [Streptococcus pyogenes phage
315.5]
gi|21904694|gb|AAM79566.1| conserved hypothetical protein - phage-associated [Streptococcus
pyogenes MGAS315]
gi|21905083|gb|AAM79948.1| conserved hypothetical protein - phage-associated [Streptococcus
pyogenes MGAS315]
Length = 267
Score = 40.9 bits (94), Expect = 0.84, Method: Composition-based stats.
Identities = 28/197 (14%), Positives = 52/197 (26%), Gaps = 12/197 (6%)
Query: 8 EQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYA 67
+ A GF +IP+ K+P ++ + ++ + + +
Sbjct: 3 DYAIYYQQKGFSVIPISKDGKKPLVAFA-DKPAFTEHELRLIWKDNPDANIALKTDTFFV 61
Query: 68 FDIDSK-DEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHL 126
DID D ++ E P P + K +
Sbjct: 62 IDIDVHNDVDGLKNLREW-EHARLIPKTLQATTPSGGRHIYLKKPKGVSMAQNIGFIDGV 120
Query: 127 DILGCGQYFVAYNIHPKTKKEYTWTT--PPHRFKVEDTPLLSEEDVEYLFKFFQEITVPL 184
D+ +V K Y W P ++ + PL L +E+
Sbjct: 121 DLKAHVNNYVLVPPSNNAKGMYEWDMVHSPTSGEMTEAPL-------ELINVLRELKPAY 173
Query: 185 VKDKKSIIPSKTWTNNN 201
D S +N
Sbjct: 174 EYDASSFTSGDYQGSNK 190
>gi|326437514|gb|EGD83084.1| hypothetical protein PTSG_12063 [Salpingoeca sp. ATCC 50818]
Length = 942
Score = 40.9 bits (94), Expect = 0.85, Method: Composition-based stats.
Identities = 15/91 (16%), Positives = 33/91 (36%), Gaps = 6/91 (6%)
Query: 684 EEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLK 743
R DT W+ ++ E + K+Y + ++ + +
Sbjct: 287 RAVRIDEDTV-TWLRANFELKTGFTVERRLVYKAY---CRHMQSMMQEPCNAAGFGKVI- 341
Query: 744 QKGFIGGIKREKIEKEWKSKRIIKGLKLKPA 774
+G G+ ++ SK +GL++KP+
Sbjct: 342 -RGVFPGVTSRRLGSRGHSKYHYEGLRIKPS 371
>gi|302876869|ref|YP_003845502.1| ABC transporter related [Clostridium cellulovorans 743B]
gi|307687554|ref|ZP_07630000.1| ABC transporter related protein [Clostridium cellulovorans 743B]
gi|302579726|gb|ADL53738.1| ABC transporter related [Clostridium cellulovorans 743B]
Length = 645
Score = 40.9 bits (94), Expect = 0.85, Method: Composition-based stats.
Identities = 28/166 (16%), Positives = 57/166 (34%), Gaps = 39/166 (23%)
Query: 470 LDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529
L+ ++ FE ++V++ F LL ++ I I G G+GKSTL+N+I
Sbjct: 315 LEHINKSFEDKKVIEDF----SYILLRDDR----IGIVGANGNGKSTLINIISGKLQKDS 366
Query: 530 VINAEASDIMQNRPPEAGKANPSLIRLM-----GSRIVIISETNENDEINAAKIKQMTGG 584
+ + + +R++ G+ ++ ++ G
Sbjct: 367 GEVVIGDTVRIGVYSQENYSMNEELRVIEYIREGAELITTAD-----------------G 409
Query: 585 DCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVI 630
+ +TA S +TP + RR ++
Sbjct: 410 EKVTASQMLEKFLFPSHLQWTP---------ISKLSGGEKRRLYLL 446
>gi|123153555|ref|XP_001277841.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121822832|gb|EAX64911.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 194
Score = 40.9 bits (94), Expect = 0.85, Method: Composition-based stats.
Identities = 31/189 (16%), Positives = 58/189 (30%), Gaps = 16/189 (8%)
Query: 560 RIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV 616
++++ +E D +N+ +K + Y + + + N
Sbjct: 2 KLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMK 61
Query: 617 RNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-I 675
D RRY+V+ +D + L T + I
Sbjct: 62 LESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTPNFYNHLFSYFMTLDISKFNPRQI 117
Query: 676 PEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIST 735
P + E + Y+ +ID+ + SL SY +Y ++ Y S
Sbjct: 118 PHTEERQTLLEANKS-VYELFIDETNFECLDER----SLYDSYKQYCQE---YGYMAASK 169
Query: 736 RTVTLNLKQ 744
RT N+K
Sbjct: 170 RTFLANVKN 178
>gi|302666472|ref|XP_003024835.1| hypothetical protein TRV_01000 [Trichophyton verrucosum HKI 0517]
gi|291188908|gb|EFE44224.1| hypothetical protein TRV_01000 [Trichophyton verrucosum HKI 0517]
Length = 416
Score = 40.9 bits (94), Expect = 0.85, Method: Composition-based stats.
Identities = 36/210 (17%), Positives = 74/210 (35%), Gaps = 30/210 (14%)
Query: 439 ETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLG-- 496
+ G++ + ++L +T+ T ++ ++ +E+++ V L
Sbjct: 76 KNGKRRQRKEKLVLTQYEQTIAMDVVAPEDIPVTFEDIGGLDEIIEELKESVIYPLTMPQ 135
Query: 497 --GNKAQRF-----IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAG-- 547
+ + + G G GK+ L + + G + IN S + + ++
Sbjct: 136 LYRTTSSLLSAPSGVLLYGPPGCGKTMLAKALAHESGACF-INLHISTLTEKWYGDSNKL 194
Query: 548 -KANPSLIRLMGSRIVIISETN-------ENDEINAAKIKQ--MTGGDCMTARLNYGNTY 597
A SL R + IV I E + + + +K MT D +T+ G
Sbjct: 195 VNAVFSLARKLEPSIVFIDEIDAVLGTRRSGEHEASGMVKAEFMTHWDGLTSANAMGQ-- 252
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRY 627
P N +++ D+A RR
Sbjct: 253 ---PQRVLILGATN---RIQDIDEAILRRM 276
>gi|300709105|ref|XP_002996720.1| hypothetical protein NCER_100137 [Nosema ceranae BRL01]
gi|239606042|gb|EEQ83049.1| hypothetical protein NCER_100137 [Nosema ceranae BRL01]
Length = 586
Score = 40.9 bits (94), Expect = 0.85, Method: Composition-based stats.
Identities = 23/104 (22%), Positives = 42/104 (40%), Gaps = 17/104 (16%)
Query: 476 YFESEEV-MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534
F++ ++ ++ C+G+ L + I G GSGKST +N + +Y + +
Sbjct: 361 VFDNVDLYINNLKICIGINLTINKGDKIAIV--GKNGSGKSTFLNALLRM--REYEGSIQ 416
Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKI 578
DI ++ + + N IIS +N I I
Sbjct: 417 FDDIEMDKISKYSQRN------------IISYIPQNPGIKEGTI 448
>gi|242005917|ref|XP_002423806.1| 26S protease regulatory subunit, putative [Pediculus humanus
corporis]
gi|212507022|gb|EEB11068.1| 26S protease regulatory subunit, putative [Pediculus humanus
corporis]
Length = 414
Score = 40.9 bits (94), Expect = 0.85, Method: Composition-based stats.
Identities = 31/151 (20%), Positives = 52/151 (34%), Gaps = 19/151 (12%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL---IRLMGSR 560
+ + G G+GK+ L + + I S+++Q E + L R
Sbjct: 194 VLLYGPPGTGKTLLARAVAH-HTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPS 252
Query: 561 IVIISETNENDEINAAKIKQMTGGDC----MTARLNYGNTYSESPASFTPFIVPNKHLFV 616
I+ + E D I +++I+ GGD L E+ + + N +
Sbjct: 253 IIFMDEI---DSIGSSRIESANGGDSEVQRTMLELLNQLDGFEATKNIKVIMATN---RI 306
Query: 617 RNPDDAWWR--RY-IVIPFDKPIANRDASFA 644
D A R R I F P N +A
Sbjct: 307 DILDPALLRPGRIDRKIEF--PPPNEEARLD 335
>gi|197251558|ref|YP_002147594.1| putative phage-related protein [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
gi|197215261|gb|ACH52658.1| putative phage-related protein [Salmonella enterica subsp. enterica
serovar Agona str. SL483]
Length = 885
Score = 40.9 bits (94), Expect = 0.85, Method: Composition-based stats.
Identities = 37/228 (16%), Positives = 72/228 (31%), Gaps = 31/228 (13%)
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELY------------ITKSTGTPFVEGEPSQEFL 470
D S+ + + D G+ + E Y +T E + ++
Sbjct: 452 DYSAWLFN-RVAVCD---GRLYEMNDEDYFEINHASVKSLSLTPVLDLNPKLNEFTTGWI 507
Query: 471 DLVSGYFESEEVMDYFTRCVGMALLGGNKA--QRFIHI--RGVGGSGKSTLMNLIKYAFG 526
D + F + + +G + + F + G G+GKSTL+ + G
Sbjct: 508 DDIWTAFGEKGYVA-LAFWLGSLFAEQIRERDKSFPFLEIVGEPGTGKSTLIEFLWKLAG 566
Query: 527 N-QYVINAEASDIMQNRPPEAGKANPSLIRLM-GSRIVIISETNENDEINAAKIKQMTGG 584
+Y + R + + + L+ G R ++ + + ++K + G
Sbjct: 567 REEYEGFDPSKSTAAARGRNFAQVSNLPVVLIEGDR---TTDNAKQRAFDWDELKSLYNG 623
Query: 585 DCMTARLNYG--NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVI 630
A N E P + I N + A+ R I I
Sbjct: 624 RASRAVGIKSNNNETYEPPFRGSIVIAQNAD---TDGSKAFLERIIHI 668
>gi|332186903|ref|ZP_08388644.1| phage regulatory Rha family protein [Sphingomonas sp. S17]
gi|332012913|gb|EGI54977.1| phage regulatory Rha family protein [Sphingomonas sp. S17]
Length = 225
Score = 40.9 bits (94), Expect = 0.86, Method: Composition-based stats.
Identities = 17/117 (14%), Positives = 36/117 (30%), Gaps = 19/117 (16%)
Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAK 716
W + G+ + G + AW +D + + L +
Sbjct: 123 AWAVAGLPDVFAAG-------ALERVAGAAAFADPAVVAWSEDRLEHDPAARASTAMLFE 175
Query: 717 SYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773
Y + + +S L G I G + + I++ +G++L+P
Sbjct: 176 DYQYWAAMNGH---PAMSLAMFGRQLSAMG-IEGFRSDGIKR--------RGVRLRP 220
>gi|123212635|ref|XP_001285303.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121848541|gb|EAX72373.1| hypothetical protein TVAG_598520 [Trichomonas vaginalis G3]
Length = 211
Score = 40.9 bits (94), Expect = 0.86, Method: Composition-based stats.
Identities = 36/209 (17%), Positives = 64/209 (30%), Gaps = 19/209 (9%)
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGN 595
M N GK N S+ + +++ +E D +N+ +K + Y +
Sbjct: 1 MTNLENICGKFNSSIENMK---LIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKD 57
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
+ + N D RRY+V+ +D + L T
Sbjct: 58 QRVCENVANFIMVSNNAVPMKLESSD---RRYVVVR-TSEAHMQDTEYFDDLAETLTPNF 113
Query: 656 KKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
+ IP + E + Y+ +ID+ + SL
Sbjct: 114 YNHLFSYFMTLDISKFNPRQIPHTEERQTLLEANKS-VYELFIDETNFECLDER----SL 168
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLK 743
Y +Y ++ Y S RT N+K
Sbjct: 169 YDEYKQYCQE---YGYMTASKRTFLANVK 194
>gi|549224|sp|P36723|VE1_HPV27 RecName: Full=Replication protein E1; AltName: Full=ATP-dependent
helicase E1
gi|396967|emb|CAA52538.1| early protein [Human papillomavirus type 27]
Length = 643
Score = 40.9 bits (94), Expect = 0.87, Method: Composition-based stats.
Identities = 24/178 (13%), Positives = 53/178 (29%), Gaps = 21/178 (11%)
Query: 462 EGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLI 521
E + + + + E + + L G + I G +GKS +
Sbjct: 429 EEGDWKPIVKFLR--HQGVEFVSFL--AAFKLFLKGVPKKNCIVFYGPADTGKSYFCMSL 484
Query: 522 KYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISE-TNENDEINAAKIKQ 580
G + A +S + L L S+I ++ + T + ++
Sbjct: 485 LQFLGGAVISYANSSS------------HFWLQPLSDSKIGLLDDATPQCWSYIDTYLRN 532
Query: 581 MTGGDCMTARLNYGNTYS-ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637
+ G+ ++ + + P I N + + R + F+ P
Sbjct: 533 LLDGNPVSIDRKHKTLLQLKCPP---LMITTNINPLEEDRWKYLRSRLTLFTFNNPFP 587
>gi|312913684|dbj|BAJ37658.1| putative phage-related protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. T000240]
Length = 885
Score = 40.9 bits (94), Expect = 0.87, Method: Composition-based stats.
Identities = 37/228 (16%), Positives = 72/228 (31%), Gaps = 31/228 (13%)
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELY------------ITKSTGTPFVEGEPSQEFL 470
D S+ + + D G+ + E Y +T E + ++
Sbjct: 452 DYSAWLFN-RVAVCD---GRLYEMNDEDYFEINHASVKSLSLTPVLDLNPKLNEFTTGWI 507
Query: 471 DLVSGYFESEEVMDYFTRCVGMALLGGNKA--QRFIHI--RGVGGSGKSTLMNLIKYAFG 526
D + F + + +G + + F + G G+GKSTL+ + G
Sbjct: 508 DDIWTAFGEKGYVA-LAFWLGSLFAEQIRERDKSFPFLEIVGEPGTGKSTLIEFLWKLAG 566
Query: 527 N-QYVINAEASDIMQNRPPEAGKANPSLIRLM-GSRIVIISETNENDEINAAKIKQMTGG 584
+Y + R + + + L+ G R ++ + + ++K + G
Sbjct: 567 REEYEGFDPSKSTAAARGRNFAQVSNLPVVLIEGDR---TTDNAKQRAFDWDELKSLYNG 623
Query: 585 DCMTARLNYG--NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVI 630
A N E P + I N + A+ R I I
Sbjct: 624 RASRAVGIKSNNNETYEPPFRGSIVIAQNAD---TDGSKAFLERIIHI 668
>gi|123242108|ref|XP_001288163.1| hypothetical protein [Trichomonas vaginalis G3]
gi|123244167|ref|XP_001288618.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121856910|gb|EAX75233.1| hypothetical protein TVAG_443280 [Trichomonas vaginalis G3]
gi|121858142|gb|EAX75688.1| hypothetical protein TVAG_017120 [Trichomonas vaginalis G3]
Length = 196
Score = 40.9 bits (94), Expect = 0.88, Method: Composition-based stats.
Identities = 35/209 (16%), Positives = 66/209 (31%), Gaps = 19/209 (9%)
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGN 595
M N GK N S+ + +++ +E D +N+ +K + Y +
Sbjct: 1 MTNLENICGKFNSSIENMK---LIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKD 57
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
+ + N D RRY+V+ +D + L T +
Sbjct: 58 QRVCENVANFIMVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDF 113
Query: 656 KKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
+ IP + E + Y+ +I++ + + SL
Sbjct: 114 YNHLFSYFMTLDISKFNPRQIPHTEERQTLLEANKS-VYELFIEE----SDFECLDEKSL 168
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLK 743
Y +Y ++ Y S RT N+K
Sbjct: 169 YDEYKQYCQE---YGYMAASKRTFLANVK 194
>gi|123237165|ref|XP_001287104.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121853910|gb|EAX74174.1| hypothetical protein TVAG_257560 [Trichomonas vaginalis G3]
Length = 211
Score = 40.9 bits (94), Expect = 0.88, Method: Composition-based stats.
Identities = 35/210 (16%), Positives = 66/210 (31%), Gaps = 19/210 (9%)
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGN 595
M N GK N S+ + +++ +E D +N+ +K + Y +
Sbjct: 1 MTNLENICGKFNSSIENMK---LIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKD 57
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
+ + N D RRY+V+ +D + L T +
Sbjct: 58 QRVCENVANFIMVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDF 113
Query: 656 KKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
+ IP + E + Y+ +I++ + + SL
Sbjct: 114 YNHLFSYFMTLDISKFNPRQIPHTEERQTLLEANKS-VYELFIEE----SDFECLDERSL 168
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLKQ 744
Y +Y ++ Y S RT N+K
Sbjct: 169 YDEYKQYCQE---YGYMTASKRTFLANVKN 195
>gi|123205777|ref|XP_001284757.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121846924|gb|EAX71827.1| hypothetical protein TVAG_561730 [Trichomonas vaginalis G3]
Length = 211
Score = 40.9 bits (94), Expect = 0.88, Method: Composition-based stats.
Identities = 35/209 (16%), Positives = 66/209 (31%), Gaps = 19/209 (9%)
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGN 595
M N GK N S+ + +++ +E D +N+ +K + Y +
Sbjct: 1 MTNLENICGKFNSSIENMK---LIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKD 57
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
+ + N D RRY+V+ +D + L T +
Sbjct: 58 QRVCENVANFIMVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDF 113
Query: 656 KKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
+ IP + E + Y+ +I++ + + SL
Sbjct: 114 YNHLFSYFMTLDISKFNPRQIPHTEERQTLLEANKS-VYELFIEE----SDFECLDEKSL 168
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLK 743
Y +Y ++ Y S RT N+K
Sbjct: 169 YDEYKQYCQE---YGYMAASKRTFLANVK 194
>gi|123334569|ref|XP_001294121.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121871733|gb|EAX81191.1| hypothetical protein TVAG_338300 [Trichomonas vaginalis G3]
Length = 193
Score = 40.9 bits (94), Expect = 0.90, Method: Composition-based stats.
Identities = 31/189 (16%), Positives = 58/189 (30%), Gaps = 16/189 (8%)
Query: 560 RIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV 616
++++ +E D +N+ +K + Y + + + N
Sbjct: 2 KLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFVMVSNNAVPMK 61
Query: 617 RNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-I 675
D RRY+V+ +D + L T + I
Sbjct: 62 LESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTPNFYNHLFSYFMTLDISNFNPRQI 117
Query: 676 PEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIST 735
P + E + Y+ +ID+ + SL SY +Y ++ Y S
Sbjct: 118 PYTEERQTLLEANKS-VYELFIDETNFECLDER----SLYDSYKQYCQE---YGYMAASK 169
Query: 736 RTVTLNLKQ 744
RT N+K
Sbjct: 170 RTFLANVKN 178
>gi|123502810|ref|XP_001328377.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121911319|gb|EAY16154.1| hypothetical protein TVAG_465420 [Trichomonas vaginalis G3]
Length = 194
Score = 40.9 bits (94), Expect = 0.90, Method: Composition-based stats.
Identities = 30/189 (15%), Positives = 59/189 (31%), Gaps = 16/189 (8%)
Query: 560 RIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV 616
++++ +E D +N+ +K + Y + + + N
Sbjct: 2 KLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMK 61
Query: 617 RNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-I 675
D RRY+V+ +D + L T + + I
Sbjct: 62 LESSD---RRYVVVR-TSEAHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQI 117
Query: 676 PEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIST 735
P + E + Y+ +ID+ + + SL Y +Y ++ Y S
Sbjct: 118 PYTEERQTLLEANKS-VYELFIDET----DFECLDERSLYDEYKQYCQE---YGYMTASK 169
Query: 736 RTVTLNLKQ 744
RT N+K
Sbjct: 170 RTFLANVKN 178
>gi|123403492|ref|XP_001302246.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121883517|gb|EAX89316.1| hypothetical protein TVAG_017640 [Trichomonas vaginalis G3]
Length = 190
Score = 40.9 bits (94), Expect = 0.91, Method: Composition-based stats.
Identities = 30/188 (15%), Positives = 58/188 (30%), Gaps = 16/188 (8%)
Query: 560 RIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV 616
++++ +E D +N+ +K + Y + + + N
Sbjct: 2 KLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMK 61
Query: 617 RNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-I 675
D RRY+V+ +D + L T + I
Sbjct: 62 LESSD---RRYVVVR-TSEAHMQDTEYFDDLAETLTPNFYNHLFSYFMTLDISKFNPRQI 117
Query: 676 PEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIST 735
P + E + Y+ +ID+ + + SL Y +Y ++ Y S
Sbjct: 118 PYTEERQTLLEANKS-VYELFIDET----DFECLDERSLYDEYKQYCQE---YGYMAASK 169
Query: 736 RTVTLNLK 743
RT N+K
Sbjct: 170 RTFLANVK 177
>gi|28895435|ref|NP_801785.1| hypothetical protein SPs0523 [Streptococcus pyogenes SSI-1]
gi|28810681|dbj|BAC63618.1| hypothetical protein [Streptococcus pyogenes SSI-1]
Length = 270
Score = 40.9 bits (94), Expect = 0.92, Method: Composition-based stats.
Identities = 28/197 (14%), Positives = 52/197 (26%), Gaps = 12/197 (6%)
Query: 8 EQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYA 67
+ A GF +IP+ K+P ++ + ++ + + +
Sbjct: 6 DYAIYYQQKGFSVIPISKDGKKPLVAFA-DKPAFTEHELRLIWKDNPDANIALKTDTFFV 64
Query: 68 FDIDSK-DEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHL 126
DID D ++ E P P + K +
Sbjct: 65 IDIDVHNDVDGLKNLREW-EHARLIPKTLQATTPSGGRHIYLKKPKGVSMAQNIGFIDGV 123
Query: 127 DILGCGQYFVAYNIHPKTKKEYTWTT--PPHRFKVEDTPLLSEEDVEYLFKFFQEITVPL 184
D+ +V K Y W P ++ + PL L +E+
Sbjct: 124 DLKAHVNNYVLVPPSNNAKGMYEWDMVHSPTSGEMTEAPL-------ELINVLRELKPAY 176
Query: 185 VKDKKSIIPSKTWTNNN 201
D S +N
Sbjct: 177 EYDASSFTSGDYQGSNK 193
>gi|227872575|ref|ZP_03990911.1| virulence-associated protein E [Oribacterium sinus F0268]
gi|227841576|gb|EEJ51870.1| virulence-associated protein E [Oribacterium sinus F0268]
Length = 819
Score = 40.9 bits (94), Expect = 0.93, Method: Composition-based stats.
Identities = 30/155 (19%), Positives = 52/155 (33%), Gaps = 18/155 (11%)
Query: 503 FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIV 562
+ + G G GKST++ + + +GK I G IV
Sbjct: 536 MLILVGAQGIGKSTILKKLGK------------EWFTDSLVKFSGKEAEDTI--AGKWIV 581
Query: 563 IISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDA 622
+SE + + +IKQ R +Y E P F N+ F+++
Sbjct: 582 EVSELTALNRQESTEIKQFLSTRSSNYRESYARRSKEHPRKCVFFGTSNEDEFLKDTTGN 641
Query: 623 WWRRYIVIPFDKPIANRD--ASFAQKLETKYTLEA 655
RR+ +P D +D ++ + E
Sbjct: 642 --RRFYPLPVDADRIKKDIWKDLTEQEVDQIWAEV 674
>gi|226945766|ref|YP_002800839.1| DNA primase-like protein [Azotobacter vinelandii DJ]
gi|226720693|gb|ACO79864.1| DNA primase-like protein [Azotobacter vinelandii DJ]
Length = 857
Score = 40.9 bits (94), Expect = 0.93, Method: Composition-based stats.
Identities = 37/190 (19%), Positives = 65/190 (34%), Gaps = 25/190 (13%)
Query: 489 CVGMALLGGNKAQR----FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544
+G + Q F+ + G G+GKSTL+ + G Y R
Sbjct: 499 WLGSLFAEQIRTQHSSFPFLELTGKPGAGKSTLLRFLWKLLGRDYEGFDAQKSTKAGRQR 558
Query: 545 EAGKANPSLIRLMGSRIVIISETNENDE-------INAAKIKQMTGGDCMTARLNY--GN 595
G+ + ++ E++ N+ + ++K+ G + + GN
Sbjct: 559 HMGQVSNMP--------IVFKESDRNEPDKAHAKTFDWDELKEFFDGGTLGTKGVKTAGN 610
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA-NRDASFAQKLETKYTLE 654
E P T I N + N +A R I F + +A + A KL E
Sbjct: 611 ETYEPPFRGTIAISQNADV---NASEAILTRICKIWFPELVATDESREAADKLNLMRVGE 667
Query: 655 AKKWFLKGVK 664
+ LK ++
Sbjct: 668 LSHFMLKAMR 677
>gi|148656011|ref|YP_001276216.1| ATPase central domain-containing protein [Roseiflexus sp. RS-1]
gi|148568121|gb|ABQ90266.1| AAA ATPase, central domain protein [Roseiflexus sp. RS-1]
Length = 458
Score = 40.9 bits (94), Expect = 0.93, Method: Composition-based stats.
Identities = 18/95 (18%), Positives = 32/95 (33%), Gaps = 11/95 (11%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQ----YVINAEASDI-------MQNRPPEAGKANPS 552
+ + G G+GK+T+ I G Y + + I Q A A
Sbjct: 179 LFLYGPPGNGKTTIAEGIANMLGGHVLIPYAVEVDGQIIKVFDPLNHQLIEQPATAAARE 238
Query: 553 LIRLMGSRIVIISETNENDEINAAKIKQMTGGDCM 587
R V+ S + + + + M GG+ +
Sbjct: 239 PAVNFEGRPVVDSPLPDRRWLVCKRPRVMVGGELI 273
>gi|332851943|ref|XP_512310.3| PREDICTED: DNA-binding protein RFX2 isoform 2 [Pan troglodytes]
Length = 547
Score = 40.9 bits (94), Expect = 0.93, Method: Composition-based stats.
Identities = 13/97 (13%), Positives = 38/97 (39%), Gaps = 7/97 (7%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
W+ D + E + SL Y + ++ + ++ + + + G++
Sbjct: 25 QWLLDNYETAEGVSLPRSSLYNHYLRHCQE---HKLDPVNAASFGKLI--RSVFMGLRTR 79
Query: 755 KIEKEWKSKRIIKGLKLKPA--FESVDDNSNIIDFKR 789
++ SK G++LKP + +++ + ++
Sbjct: 80 RLGTRGNSKYHYYGIRLKPDSPLNRLQEDTQYMAMRQ 116
>gi|332265196|ref|XP_003281614.1| PREDICTED: DNA-binding protein RFX2-like [Nomascus leucogenys]
Length = 705
Score = 40.9 bits (94), Expect = 0.93, Method: Composition-based stats.
Identities = 13/97 (13%), Positives = 38/97 (39%), Gaps = 7/97 (7%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
W+ D + E + SL Y + ++ + ++ + + + G++
Sbjct: 227 QWLLDNYETAEGVSLPRSSLYNHYLRHCQE---HKLDPVNAASFGKLI--RSVFMGLRTR 281
Query: 755 KIEKEWKSKRIIKGLKLKPA--FESVDDNSNIIDFKR 789
++ SK G++LKP + +++ + ++
Sbjct: 282 RLGTRGNSKYHYYGIRLKPDSPLNRLQEDTQYMAMRQ 318
>gi|327133916|dbj|BAK08580.1| polyprotein [Human enterovirus 68]
Length = 2188
Score = 40.9 bits (94), Expect = 0.93, Method: Composition-based stats.
Identities = 28/152 (18%), Positives = 47/152 (30%), Gaps = 31/152 (20%)
Query: 500 AQRFIHIRGVGGSGKSTLMNLIKYAF-----GNQYVINAEASDIMQNRPPEAGKANPSLI 554
+ I G G+GKS NLI A G+ Y + + +
Sbjct: 1228 EPVCLIIHGSPGTGKSVASNLIARAITEKLGGDIYSLPPDPKYFDGYKQQT--------- 1278
Query: 555 RLMGSRIVIISETNEN-DEINAAKIKQMTGG-DCMTARLNYGNTYSESPASFTPFIVPN- 611
+V++ + +N D + + QM D + + + + F N
Sbjct: 1279 ------VVLMDDLMQNPDGNDISMFCQMVSTVDFIPPMASLEEKGTLYTSPF-LIATTNA 1331
Query: 612 ---KHLFVRNPDDAWWRRYIVIPFDKPIANRD 640
V + A RR+ FD I D
Sbjct: 1332 GSIHAPTVSD-SKALSRRFK---FDVDIEVTD 1359
>gi|327133914|dbj|BAK08579.1| polyprotein [Human enterovirus 68]
Length = 2188
Score = 40.9 bits (94), Expect = 0.93, Method: Composition-based stats.
Identities = 28/152 (18%), Positives = 47/152 (30%), Gaps = 31/152 (20%)
Query: 500 AQRFIHIRGVGGSGKSTLMNLIKYAF-----GNQYVINAEASDIMQNRPPEAGKANPSLI 554
+ I G G+GKS NLI A G+ Y + + +
Sbjct: 1228 EPVCLIIHGSPGTGKSVASNLIARAITEKLGGDIYSLPPDPKYFDGYKQQT--------- 1278
Query: 555 RLMGSRIVIISETNEN-DEINAAKIKQMTGG-DCMTARLNYGNTYSESPASFTPFIVPN- 611
+V++ + +N D + + QM D + + + + F N
Sbjct: 1279 ------VVLMDDLMQNPDGNDISMFCQMVSTVDFIPPMASLEEKGTLYTSPF-LIATTNA 1331
Query: 612 ---KHLFVRNPDDAWWRRYIVIPFDKPIANRD 640
V + A RR+ FD I D
Sbjct: 1332 GSIHAPTVSD-SKALSRRFK---FDVDIEVTD 1359
>gi|327133912|dbj|BAK08578.1| polyprotein [Human enterovirus 68]
Length = 2188
Score = 40.9 bits (94), Expect = 0.93, Method: Composition-based stats.
Identities = 28/152 (18%), Positives = 47/152 (30%), Gaps = 31/152 (20%)
Query: 500 AQRFIHIRGVGGSGKSTLMNLIKYAF-----GNQYVINAEASDIMQNRPPEAGKANPSLI 554
+ I G G+GKS NLI A G+ Y + + +
Sbjct: 1228 EPVCLIIHGSPGTGKSVASNLIARAITEKLGGDIYSLPPDPKYFDGYKQQT--------- 1278
Query: 555 RLMGSRIVIISETNEN-DEINAAKIKQMTGG-DCMTARLNYGNTYSESPASFTPFIVPN- 611
+V++ + +N D + + QM D + + + + F N
Sbjct: 1279 ------VVLMDDLMQNPDGNDISMFCQMVSTVDFIPPMASLEEKGTLYTSPF-LIATTNA 1331
Query: 612 ---KHLFVRNPDDAWWRRYIVIPFDKPIANRD 640
V + A RR+ FD I D
Sbjct: 1332 GSIHAPTVSD-SKALSRRFK---FDVDIEVTD 1359
>gi|327133910|dbj|BAK08577.1| polyprotein [Human enterovirus 68]
Length = 2188
Score = 40.9 bits (94), Expect = 0.93, Method: Composition-based stats.
Identities = 28/152 (18%), Positives = 47/152 (30%), Gaps = 31/152 (20%)
Query: 500 AQRFIHIRGVGGSGKSTLMNLIKYAF-----GNQYVINAEASDIMQNRPPEAGKANPSLI 554
+ I G G+GKS NLI A G+ Y + + +
Sbjct: 1228 EPVCLIIHGSPGTGKSVASNLIARAITEKLGGDIYSLPPDPKYFDGYKQQT--------- 1278
Query: 555 RLMGSRIVIISETNEN-DEINAAKIKQMTGG-DCMTARLNYGNTYSESPASFTPFIVPN- 611
+V++ + +N D + + QM D + + + + F N
Sbjct: 1279 ------VVLMDDLMQNPDGNDISMFCQMVSTVDFIPPMASLEEKGTLYTSPF-LIATTNA 1331
Query: 612 ---KHLFVRNPDDAWWRRYIVIPFDKPIANRD 640
V + A RR+ FD I D
Sbjct: 1332 GSIHAPTVSD-SKALSRRFK---FDVDIEVTD 1359
>gi|301791066|ref|XP_002930530.1| PREDICTED: DNA-binding protein RFX2-like [Ailuropoda melanoleuca]
Length = 665
Score = 40.9 bits (94), Expect = 0.93, Method: Composition-based stats.
Identities = 13/97 (13%), Positives = 38/97 (39%), Gaps = 7/97 (7%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
W+ D + E + SL Y + ++ + ++ + + + G++
Sbjct: 145 QWLLDNYETAEGVSLPRSSLYNHYLRHCQE---HKLDPVNAASFGKLI--RSVFMGLRTR 199
Query: 755 KIEKEWKSKRIIKGLKLKPA--FESVDDNSNIIDFKR 789
++ SK G++LKP + +++ + ++
Sbjct: 200 RLGTRGNSKYHYYGIRLKPDSPLNRLQEDTQYMAMRQ 236
>gi|297275891|ref|XP_001086864.2| PREDICTED: DNA-binding protein RFX2 isoform 3 [Macaca mulatta]
Length = 625
Score = 40.9 bits (94), Expect = 0.93, Method: Composition-based stats.
Identities = 13/97 (13%), Positives = 38/97 (39%), Gaps = 7/97 (7%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
W+ D + E + SL Y + ++ + ++ + + + G++
Sbjct: 103 QWLLDNYETAEGVSLPRSSLYNHYLRHCQE---HKLDPVNAASFGKLI--RSVFMGLRTR 157
Query: 755 KIEKEWKSKRIIKGLKLKPA--FESVDDNSNIIDFKR 789
++ SK G++LKP + +++ + ++
Sbjct: 158 RLGTRGNSKYHYYGIRLKPDSPLNRLQEDTQYMAMRQ 194
>gi|296232641|ref|XP_002761705.1| PREDICTED: DNA-binding protein RFX2-like [Callithrix jacchus]
Length = 481
Score = 40.9 bits (94), Expect = 0.93, Method: Composition-based stats.
Identities = 13/97 (13%), Positives = 38/97 (39%), Gaps = 7/97 (7%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
W+ D + E + SL Y + ++ + ++ + + + G++
Sbjct: 25 QWLLDNYETAEGVSLPRSSLYNHYLRHCQE---HKLDPVNAASFGKLI--RSVFMGLRTR 79
Query: 755 KIEKEWKSKRIIKGLKLKPA--FESVDDNSNIIDFKR 789
++ SK G++LKP + +++ + ++
Sbjct: 80 RLGTRGNSKYHYYGIRLKPDSPLNRLQEDTQYMAMRQ 116
>gi|291415560|ref|XP_002724020.1| PREDICTED: regulatory factor X2-like [Oryctolagus cuniculus]
Length = 647
Score = 40.9 bits (94), Expect = 0.93, Method: Composition-based stats.
Identities = 13/97 (13%), Positives = 38/97 (39%), Gaps = 7/97 (7%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
W+ D + E + SL Y + ++ + ++ + + + G++
Sbjct: 171 QWLLDNYETAEGVSLPRSSLYNHYLRHCQE---HKLDPVNAASFGKLI--RSVFMGLRTR 225
Query: 755 KIEKEWKSKRIIKGLKLKPA--FESVDDNSNIIDFKR 789
++ SK G++LKP + +++ + ++
Sbjct: 226 RLGTRGNSKYHYYGIRLKPDSPLNRLQEDTQYMAMRQ 262
>gi|281347533|gb|EFB23117.1| hypothetical protein PANDA_021003 [Ailuropoda melanoleuca]
Length = 662
Score = 40.9 bits (94), Expect = 0.93, Method: Composition-based stats.
Identities = 13/97 (13%), Positives = 38/97 (39%), Gaps = 7/97 (7%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
W+ D + E + SL Y + ++ + ++ + + + G++
Sbjct: 142 QWLLDNYETAEGVSLPRSSLYNHYLRHCQE---HKLDPVNAASFGKLI--RSVFMGLRTR 196
Query: 755 KIEKEWKSKRIIKGLKLKPA--FESVDDNSNIIDFKR 789
++ SK G++LKP + +++ + ++
Sbjct: 197 RLGTRGNSKYHYYGIRLKPDSPLNRLQEDTQYMAMRQ 233
>gi|261858644|dbj|BAI45844.1| regulatory factor X, 2 [synthetic construct]
Length = 698
Score = 40.9 bits (94), Expect = 0.93, Method: Composition-based stats.
Identities = 13/97 (13%), Positives = 38/97 (39%), Gaps = 7/97 (7%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
W+ D + E + SL Y + ++ + ++ + + + G++
Sbjct: 176 QWLLDNYETAEGVSLPRSSLYNHYLRHCQE---HKLDPVNAASFGKLI--RSVFMGLRTR 230
Query: 755 KIEKEWKSKRIIKGLKLKPA--FESVDDNSNIIDFKR 789
++ SK G++LKP + +++ + ++
Sbjct: 231 RLGTRGNSKYHYYGIRLKPDSPLNRLQEDTQYMAMRQ 267
>gi|193785851|dbj|BAG51286.1| unnamed protein product [Homo sapiens]
Length = 653
Score = 40.9 bits (94), Expect = 0.93, Method: Composition-based stats.
Identities = 13/97 (13%), Positives = 38/97 (39%), Gaps = 7/97 (7%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
W+ D + E + SL Y + ++ + ++ + + + G++
Sbjct: 131 QWLLDNYETAEGVSLPRSSLYNHYLRHCQE---HKLDPVNAASFGKLI--RSVFMGLRTR 185
Query: 755 KIEKEWKSKRIIKGLKLKPA--FESVDDNSNIIDFKR 789
++ SK G++LKP + +++ + ++
Sbjct: 186 RLGTRGNSKYHYYGIRLKPDSPLNRLQEDTQYMAMRQ 222
>gi|158255828|dbj|BAF83885.1| unnamed protein product [Homo sapiens]
Length = 698
Score = 40.9 bits (94), Expect = 0.93, Method: Composition-based stats.
Identities = 13/97 (13%), Positives = 38/97 (39%), Gaps = 7/97 (7%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
W+ D + E + SL Y + ++ + ++ + + + G++
Sbjct: 176 QWLLDNYETAEGVSLPRSSLYNHYLRHCQE---HKLDPVNAASFGKLI--RSVFMGLRTR 230
Query: 755 KIEKEWKSKRIIKGLKLKPA--FESVDDNSNIIDFKR 789
++ SK G++LKP + +++ + ++
Sbjct: 231 RLGTRGNSKYHYYGIRLKPDSPLNRLQEDTQYMAMRQ 267
>gi|156120991|ref|NP_001095642.1| DNA-binding protein RFX2 [Bos taurus]
gi|254797630|sp|A6QLW9|RFX2_BOVIN RecName: Full=DNA-binding protein RFX2; AltName: Full=Regulatory
factor X 2
gi|151553784|gb|AAI48114.1| RFX2 protein [Bos taurus]
gi|296485753|gb|DAA27868.1| regulatory factor X2 [Bos taurus]
Length = 707
Score = 40.9 bits (94), Expect = 0.93, Method: Composition-based stats.
Identities = 13/97 (13%), Positives = 38/97 (39%), Gaps = 7/97 (7%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
W+ D + E + SL Y + ++ + ++ + + + G++
Sbjct: 206 QWLLDNYETAEGVSLPRSSLYNHYLRHCQE---HKLDPVNAASFGKLI--RSVFMGLRTR 260
Query: 755 KIEKEWKSKRIIKGLKLKPA--FESVDDNSNIIDFKR 789
++ SK G++LKP + +++ + ++
Sbjct: 261 RLGTRGNSKYHYYGIRLKPDSPLNRLQEDTQYMAMRQ 297
>gi|149716393|ref|XP_001495252.1| PREDICTED: regulatory factor X, 2 (influences HLA class II
expression) isoform 2 [Equus caballus]
Length = 702
Score = 40.9 bits (94), Expect = 0.93, Method: Composition-based stats.
Identities = 13/97 (13%), Positives = 38/97 (39%), Gaps = 7/97 (7%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
W+ D + E + SL Y + ++ + ++ + + + G++
Sbjct: 181 QWLLDNYETAEGVSLPRSSLYNHYLRHCQE---HKLDPVNAASFGKLI--RSVFMGLRTR 235
Query: 755 KIEKEWKSKRIIKGLKLKPA--FESVDDNSNIIDFKR 789
++ SK G++LKP + +++ + ++
Sbjct: 236 RLGTRGNSKYHYYGIRLKPDSPLNRLQEDTQYMAMRQ 272
>gi|149716391|ref|XP_001495231.1| PREDICTED: regulatory factor X, 2 (influences HLA class II
expression) isoform 1 [Equus caballus]
Length = 727
Score = 40.9 bits (94), Expect = 0.93, Method: Composition-based stats.
Identities = 13/97 (13%), Positives = 38/97 (39%), Gaps = 7/97 (7%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
W+ D + E + SL Y + ++ + ++ + + + G++
Sbjct: 206 QWLLDNYETAEGVSLPRSSLYNHYLRHCQE---HKLDPVNAASFGKLI--RSVFMGLRTR 260
Query: 755 KIEKEWKSKRIIKGLKLKPA--FESVDDNSNIIDFKR 789
++ SK G++LKP + +++ + ++
Sbjct: 261 RLGTRGNSKYHYYGIRLKPDSPLNRLQEDTQYMAMRQ 297
>gi|149639208|ref|XP_001513118.1| PREDICTED: hypothetical protein [Ornithorhynchus anatinus]
Length = 644
Score = 40.9 bits (94), Expect = 0.93, Method: Composition-based stats.
Identities = 13/97 (13%), Positives = 38/97 (39%), Gaps = 7/97 (7%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
W+ D + E + SL Y + ++ + ++ + + + G++
Sbjct: 118 QWLLDNYETAEGVSLPRSSLYNHYLRHCQE---HKLDPVNAASFGKLI--RSVFMGLRTR 172
Query: 755 KIEKEWKSKRIIKGLKLKPA--FESVDDNSNIIDFKR 789
++ SK G++LKP + +++ + ++
Sbjct: 173 RLGTRGNSKYHYYGIRLKPDSPLNRLQEDTQYMAMRQ 209
>gi|119220356|gb|ABL61317.1| polyprotein [Human enterovirus 68]
Length = 2188
Score = 40.9 bits (94), Expect = 0.93, Method: Composition-based stats.
Identities = 28/152 (18%), Positives = 47/152 (30%), Gaps = 31/152 (20%)
Query: 500 AQRFIHIRGVGGSGKSTLMNLIKYAF-----GNQYVINAEASDIMQNRPPEAGKANPSLI 554
+ I G G+GKS NLI A G+ Y + + +
Sbjct: 1228 EPVCLIIHGSPGTGKSVASNLIARAITEKLGGDIYSLPPDPKYFDGYKQQT--------- 1278
Query: 555 RLMGSRIVIISETNEN-DEINAAKIKQMTGG-DCMTARLNYGNTYSESPASFTPFIVPN- 611
+V++ + +N D + + QM D + + + + F N
Sbjct: 1279 ------VVLMDDLMQNPDGNDISMFCQMVSTVDFIPPMASLEEKGTLYTSPF-LIATTNA 1331
Query: 612 ---KHLFVRNPDDAWWRRYIVIPFDKPIANRD 640
V + A RR+ FD I D
Sbjct: 1332 GSIHAPTVSD-SKALSRRFK---FDVDIEVTD 1359
>gi|90081822|dbj|BAE90192.1| unnamed protein product [Macaca fascicularis]
Length = 474
Score = 40.9 bits (94), Expect = 0.93, Method: Composition-based stats.
Identities = 13/97 (13%), Positives = 38/97 (39%), Gaps = 7/97 (7%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
W+ D + E + SL Y + ++ + ++ + + + G++
Sbjct: 103 QWLLDNYETAEGVSLPRSSLYNHYLRHCQE---HKLDPVNAASFGKLI--RSVFMGLRTR 157
Query: 755 KIEKEWKSKRIIKGLKLKPA--FESVDDNSNIIDFKR 789
++ SK G++LKP + +++ + ++
Sbjct: 158 RLGTRGNSKYHYYGIRLKPDSPLNRLQEDTQYMAMRQ 194
>gi|114674883|ref|XP_001148654.1| PREDICTED: regulatory factor X2 isoform 1 [Pan troglodytes]
Length = 690
Score = 40.9 bits (94), Expect = 0.93, Method: Composition-based stats.
Identities = 13/97 (13%), Positives = 38/97 (39%), Gaps = 7/97 (7%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
W+ D + E + SL Y + ++ + ++ + + + G++
Sbjct: 168 QWLLDNYETAEGVSLPRSSLYNHYLRHCQE---HKLDPVNAASFGKLI--RSVFMGLRTR 222
Query: 755 KIEKEWKSKRIIKGLKLKPA--FESVDDNSNIIDFKR 789
++ SK G++LKP + +++ + ++
Sbjct: 223 RLGTRGNSKYHYYGIRLKPDSPLNRLQEDTQYMAMRQ 259
>gi|75075531|sp|Q4R3Z4|RFX2_MACFA RecName: Full=DNA-binding protein RFX2; AltName: Full=Regulatory
factor X 2
gi|67971660|dbj|BAE02172.1| unnamed protein product [Macaca fascicularis]
Length = 723
Score = 40.9 bits (94), Expect = 0.93, Method: Composition-based stats.
Identities = 13/97 (13%), Positives = 38/97 (39%), Gaps = 7/97 (7%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
W+ D + E + SL Y + ++ + ++ + + + G++
Sbjct: 201 QWLLDNYETAEGVSLPRSSLYNHYLRHCQE---HKLDPVNAASFGKLI--RSVFMGLRTR 255
Query: 755 KIEKEWKSKRIIKGLKLKPA--FESVDDNSNIIDFKR 789
++ SK G++LKP + +++ + ++
Sbjct: 256 RLGTRGNSKYHYYGIRLKPDSPLNRLQEDTQYMAMRQ 292
>gi|41019062|gb|AAR98503.1| polyprotein [Human enterovirus 68]
Length = 2188
Score = 40.9 bits (94), Expect = 0.93, Method: Composition-based stats.
Identities = 28/152 (18%), Positives = 47/152 (30%), Gaps = 31/152 (20%)
Query: 500 AQRFIHIRGVGGSGKSTLMNLIKYAF-----GNQYVINAEASDIMQNRPPEAGKANPSLI 554
+ I G G+GKS NLI A G+ Y + + +
Sbjct: 1228 EPVCLIIHGSPGTGKSVASNLIARAITEKLGGDIYSLPPDPKYFDGYKQQT--------- 1278
Query: 555 RLMGSRIVIISETNEN-DEINAAKIKQMTGG-DCMTARLNYGNTYSESPASFTPFIVPN- 611
+V++ + +N D + + QM D + + + + F N
Sbjct: 1279 ------VVLMDDLMQNPDGNDISMFCQMVSTVDFIPPMASLEEKGTLYTSPF-LIATTNA 1331
Query: 612 ---KHLFVRNPDDAWWRRYIVIPFDKPIANRD 640
V + A RR+ FD I D
Sbjct: 1332 GSIHAPTVSD-SKALSRRFK---FDVDIEVTD 1359
>gi|19743881|ref|NP_000626.2| DNA-binding protein RFX2 isoform a [Homo sapiens]
gi|254763325|sp|P48378|RFX2_HUMAN RecName: Full=DNA-binding protein RFX2; AltName: Full=Regulatory
factor X 2
gi|119589518|gb|EAW69112.1| regulatory factor X, 2 (influences HLA class II expression),
isoform CRA_a [Homo sapiens]
Length = 723
Score = 40.9 bits (94), Expect = 0.93, Method: Composition-based stats.
Identities = 13/97 (13%), Positives = 38/97 (39%), Gaps = 7/97 (7%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
W+ D + E + SL Y + ++ + ++ + + + G++
Sbjct: 201 QWLLDNYETAEGVSLPRSSLYNHYLRHCQE---HKLDPVNAASFGKLI--RSVFMGLRTR 255
Query: 755 KIEKEWKSKRIIKGLKLKPA--FESVDDNSNIIDFKR 789
++ SK G++LKP + +++ + ++
Sbjct: 256 RLGTRGNSKYHYYGIRLKPDSPLNRLQEDTQYMAMRQ 292
>gi|20306878|gb|AAH28579.1| Regulatory factor X, 2 (influences HLA class II expression) [Homo
sapiens]
gi|123997273|gb|ABM86238.1| regulatory factor X, 2 (influences HLA class II expression)
[synthetic construct]
gi|157928823|gb|ABW03697.1| regulatory factor X, 2 (influences HLA class II expression)
[synthetic construct]
Length = 723
Score = 40.9 bits (94), Expect = 0.93, Method: Composition-based stats.
Identities = 13/97 (13%), Positives = 38/97 (39%), Gaps = 7/97 (7%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
W+ D + E + SL Y + ++ + ++ + + + G++
Sbjct: 201 QWLLDNYETAEGVSLPRSSLYNHYLRHCQE---HKLDPVNAASFGKLI--RSVFMGLRTR 255
Query: 755 KIEKEWKSKRIIKGLKLKPA--FESVDDNSNIIDFKR 789
++ SK G++LKP + +++ + ++
Sbjct: 256 RLGTRGNSKYHYYGIRLKPDSPLNRLQEDTQYMAMRQ 292
>gi|73987039|ref|XP_533937.2| PREDICTED: similar to regulatory factor X2 isoform a isoform 1
[Canis familiaris]
Length = 727
Score = 40.9 bits (94), Expect = 0.93, Method: Composition-based stats.
Identities = 13/97 (13%), Positives = 38/97 (39%), Gaps = 7/97 (7%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
W+ D + E + SL Y + ++ + ++ + + + G++
Sbjct: 206 QWLLDNYETAEGVSLPRSSLYNHYLRHCQE---HKLDPVNAASFGKLI--RSVFMGLRTR 260
Query: 755 KIEKEWKSKRIIKGLKLKPA--FESVDDNSNIIDFKR 789
++ SK G++LKP + +++ + ++
Sbjct: 261 RLGTRGNSKYHYYGIRLKPDSPLNRLQEDTQYMAMRQ 297
>gi|73987043|ref|XP_868414.1| PREDICTED: similar to regulatory factor X2 isoform b isoform 3
[Canis familiaris]
Length = 654
Score = 40.9 bits (94), Expect = 0.93, Method: Composition-based stats.
Identities = 13/97 (13%), Positives = 38/97 (39%), Gaps = 7/97 (7%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
W+ D + E + SL Y + ++ + ++ + + + G++
Sbjct: 131 QWLLDNYETAEGVSLPRSSLYNHYLRHCQE---HKLDPVNAASFGKLI--RSVFMGLRTR 185
Query: 755 KIEKEWKSKRIIKGLKLKPA--FESVDDNSNIIDFKR 789
++ SK G++LKP + +++ + ++
Sbjct: 186 RLGTRGNSKYHYYGIRLKPDSPLNRLQEDTQYMAMRQ 222
>gi|73987041|ref|XP_868411.1| PREDICTED: similar to regulatory factor X2 isoform b isoform 2
[Canis familiaris]
Length = 685
Score = 40.9 bits (94), Expect = 0.93, Method: Composition-based stats.
Identities = 13/97 (13%), Positives = 38/97 (39%), Gaps = 7/97 (7%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
W+ D + E + SL Y + ++ + ++ + + + G++
Sbjct: 131 QWLLDNYETAEGVSLPRSSLYNHYLRHCQE---HKLDPVNAASFGKLI--RSVFMGLRTR 185
Query: 755 KIEKEWKSKRIIKGLKLKPA--FESVDDNSNIIDFKR 789
++ SK G++LKP + +++ + ++
Sbjct: 186 RLGTRGNSKYHYYGIRLKPDSPLNRLQEDTQYMAMRQ 222
>gi|73987045|ref|XP_868416.1| PREDICTED: similar to regulatory factor X2 isoform b isoform 4
[Canis familiaris]
Length = 702
Score = 40.9 bits (94), Expect = 0.93, Method: Composition-based stats.
Identities = 13/97 (13%), Positives = 38/97 (39%), Gaps = 7/97 (7%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
W+ D + E + SL Y + ++ + ++ + + + G++
Sbjct: 181 QWLLDNYETAEGVSLPRSSLYNHYLRHCQE---HKLDPVNAASFGKLI--RSVFMGLRTR 235
Query: 755 KIEKEWKSKRIIKGLKLKPA--FESVDDNSNIIDFKR 789
++ SK G++LKP + +++ + ++
Sbjct: 236 RLGTRGNSKYHYYGIRLKPDSPLNRLQEDTQYMAMRQ 272
>gi|19743879|ref|NP_602309.1| DNA-binding protein RFX2 isoform b [Homo sapiens]
gi|119589522|gb|EAW69116.1| regulatory factor X, 2 (influences HLA class II expression),
isoform CRA_e [Homo sapiens]
Length = 698
Score = 40.9 bits (94), Expect = 0.93, Method: Composition-based stats.
Identities = 13/97 (13%), Positives = 38/97 (39%), Gaps = 7/97 (7%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
W+ D + E + SL Y + ++ + ++ + + + G++
Sbjct: 176 QWLLDNYETAEGVSLPRSSLYNHYLRHCQE---HKLDPVNAASFGKLI--RSVFMGLRTR 230
Query: 755 KIEKEWKSKRIIKGLKLKPA--FESVDDNSNIIDFKR 789
++ SK G++LKP + +++ + ++
Sbjct: 231 RLGTRGNSKYHYYGIRLKPDSPLNRLQEDTQYMAMRQ 267
>gi|197097300|ref|NP_001125003.1| DNA-binding protein RFX2 [Pongo abelii]
gi|75042371|sp|Q5RDR2|RFX2_PONAB RecName: Full=DNA-binding protein RFX2; AltName: Full=Regulatory
factor X 2
gi|55726664|emb|CAH90095.1| hypothetical protein [Pongo abelii]
Length = 704
Score = 40.9 bits (94), Expect = 0.93, Method: Composition-based stats.
Identities = 13/97 (13%), Positives = 38/97 (39%), Gaps = 7/97 (7%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
W+ D + E + SL Y + ++ + ++ + + + G++
Sbjct: 201 QWLLDNYETAEGVSLPRSSLYNHYLRHCQE---HKLDPVNAASFGKLI--RSVFMGLRTR 255
Query: 755 KIEKEWKSKRIIKGLKLKPA--FESVDDNSNIIDFKR 789
++ SK G++LKP + +++ + ++
Sbjct: 256 RLGTRGNSKYHYYGIRLKPDSPLNRLQEDTQYMAMRQ 292
>gi|452390|emb|CAA53705.1| DNA binding protein RFX2 [Homo sapiens]
Length = 723
Score = 40.9 bits (94), Expect = 0.93, Method: Composition-based stats.
Identities = 13/97 (13%), Positives = 38/97 (39%), Gaps = 7/97 (7%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
W+ D + E + SL Y + ++ + ++ + + + G++
Sbjct: 201 QWLLDNYETAEGVSLPRSSLYNHYLRHCQE---HKLDPVNAASFGKLI--RSVFMGLRTR 255
Query: 755 KIEKEWKSKRIIKGLKLKPA--FESVDDNSNIIDFKR 789
++ SK G++LKP + +++ + ++
Sbjct: 256 RLGTRGNSKYHYYGIRLKPDSPLNRLQEDTQYMAMRQ 292
>gi|239908321|ref|YP_002955062.1| hypothetical protein DMR_36850 [Desulfovibrio magneticus RS-1]
gi|239798187|dbj|BAH77176.1| hypothetical protein [Desulfovibrio magneticus RS-1]
Length = 540
Score = 40.9 bits (94), Expect = 0.94, Method: Composition-based stats.
Identities = 38/220 (17%), Positives = 69/220 (31%), Gaps = 26/220 (11%)
Query: 503 FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIV 562
+ + G+ GS KST LI+ + L
Sbjct: 245 ALFLVGMKGSSKSTTARLIRRLI-----DPVINEVLFPKNNERDMNLIFQQHPLP----- 294
Query: 563 IISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVP--NKHLFVRNPD 620
+ DE + G M R + N + PFI N + ++
Sbjct: 295 VFDNVQSYDERQCNFLCMAITGGGMEERKLHTNGETFYTHYKKPFISTSINVPIVAKDLV 354
Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCL 680
D R I++ +K I D +++ ++ + L G+ I + L + P + L
Sbjct: 355 D----RSIIVELEK-INPEDRKDEEEIFAEFANNHASY-LGGLLGVIVQALKIK-PSIAL 407
Query: 681 KAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSE 720
+AK + C GE++ S + Y+
Sbjct: 408 EAKPR-------MADFARMACAAGESMGVSSSDILHCYNR 440
>gi|124001159|ref|XP_001277000.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121918986|gb|EAY23752.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 211
Score = 40.9 bits (94), Expect = 0.94, Method: Composition-based stats.
Identities = 37/209 (17%), Positives = 66/209 (31%), Gaps = 19/209 (9%)
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGN 595
M N GK N S+ + +++ +E D +N+ +K + Y +
Sbjct: 1 MTNLENICGKFNSSIENMK---LIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKD 57
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
+ + N D RRY+V+ +D + L T +
Sbjct: 58 QRVCENVANFIMVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDF 113
Query: 656 KKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
+ IP + E + Y+ +ID+ + SL
Sbjct: 114 YNHLFSYFMTLDISKFNPRQIPYTEERQTLLEANKS-VYELFIDETNFECLDER----SL 168
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLK 743
SY +Y ++ Y S RT N+K
Sbjct: 169 YDSYKQYCQE---YGYMAASKRTFLANVK 194
>gi|123154220|ref|XP_001277976.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121823537|gb|EAX65046.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 211
Score = 40.9 bits (94), Expect = 0.95, Method: Composition-based stats.
Identities = 37/210 (17%), Positives = 65/210 (30%), Gaps = 19/210 (9%)
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGN 595
M N GK N S+ + +++ +E D +N+ +K + Y +
Sbjct: 1 MTNLENICGKFNSSIENMK---LIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKD 57
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
+ + N D RRY+V+ +D + L T
Sbjct: 58 QRVCENVANFVMVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTPNF 113
Query: 656 KKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
+ IP + E + Y+ +ID+ + SL
Sbjct: 114 YNHLFSYFMTLDISKFNPRQIPHTEERQTLLEANKS-VYELFIDETNFECLDER----SL 168
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLKQ 744
SY +Y ++ Y S RT N+K
Sbjct: 169 YDSYKQYCQE---YGYMTASKRTFLANVKN 195
>gi|123299004|ref|XP_001290934.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121864246|gb|EAX78004.1| hypothetical protein TVAG_285130 [Trichomonas vaginalis G3]
Length = 194
Score = 40.9 bits (94), Expect = 0.97, Method: Composition-based stats.
Identities = 31/189 (16%), Positives = 58/189 (30%), Gaps = 16/189 (8%)
Query: 560 RIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV 616
++++ +E D +N+ +K + Y + + + N
Sbjct: 2 KLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMK 61
Query: 617 RNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-I 675
D RRY+V+ +D + L T + I
Sbjct: 62 LESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTPNFYNHLFSYFMTLDISKFNPRQI 117
Query: 676 PEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIST 735
P + E + Y+ +ID+ + SL SY +Y ++ Y S
Sbjct: 118 PYTEERQTLLEANKS-VYELFIDETNFECLDER----SLYDSYKQYCQE---YGYMAASK 169
Query: 736 RTVTLNLKQ 744
RT N+K
Sbjct: 170 RTFLANVKN 178
>gi|224087527|ref|XP_002192213.1| PREDICTED: hypothetical protein [Taeniopygia guttata]
Length = 687
Score = 40.9 bits (94), Expect = 0.99, Method: Composition-based stats.
Identities = 13/97 (13%), Positives = 38/97 (39%), Gaps = 7/97 (7%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
W+ D + E + SL Y + ++ + ++ + + + G++
Sbjct: 183 QWLLDNYETAEGVSLPRSSLYNHYLRHCQE---HKLDPVNAASFGKLI--RSVFMGLRTR 237
Query: 755 KIEKEWKSKRIIKGLKLKPA--FESVDDNSNIIDFKR 789
++ SK G++LKP + +++ + ++
Sbjct: 238 RLGTRGNSKYHYYGIRLKPESPLNRLQEDTQYMAMRQ 274
>gi|123185719|ref|XP_001281374.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121835953|gb|EAX68444.1| hypothetical protein TVAG_546850 [Trichomonas vaginalis G3]
Length = 211
Score = 40.9 bits (94), Expect = 0.99, Method: Composition-based stats.
Identities = 36/210 (17%), Positives = 66/210 (31%), Gaps = 19/210 (9%)
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGN 595
M N GK N S+ + +++ +E D +N+ +K + Y +
Sbjct: 1 MTNLENICGKFNSSIENMK---LIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKD 57
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
+ + N D RRY+V+ +D + L T +
Sbjct: 58 QRVCENVANFIMVSNNTVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDF 113
Query: 656 KKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
+ IP + E + Y+ +ID+ + + SL
Sbjct: 114 YNHLFSYFMTLDISKFNPRQIPHTEERQTLLEANKS-VYELFIDET----DFECLDERSL 168
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLKQ 744
Y +Y ++ Y S RT N+K
Sbjct: 169 YDEYKQYCQE---YGYMTASKRTFLANVKN 195
>gi|118103131|ref|XP_418212.2| PREDICTED: hypothetical protein [Gallus gallus]
Length = 701
Score = 40.9 bits (94), Expect = 0.99, Method: Composition-based stats.
Identities = 13/97 (13%), Positives = 38/97 (39%), Gaps = 7/97 (7%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
W+ D + E + SL Y + ++ + ++ + + + G++
Sbjct: 182 QWLLDNYETAEGVSLPRSSLYNHYLRHCQE---HKLDPVNAASFGKLI--RSVFMGLRTR 236
Query: 755 KIEKEWKSKRIIKGLKLKPA--FESVDDNSNIIDFKR 789
++ SK G++LKP + +++ + ++
Sbjct: 237 RLGTRGNSKYHYYGIRLKPESPLNRLQEDTQYMAMRQ 273
>gi|123164790|ref|XP_001279177.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121828046|gb|EAX66247.1| hypothetical protein TVAG_585930 [Trichomonas vaginalis G3]
Length = 211
Score = 40.9 bits (94), Expect = 1.00, Method: Composition-based stats.
Identities = 36/210 (17%), Positives = 64/210 (30%), Gaps = 19/210 (9%)
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGN 595
M N GK N S+ + +++ +E D +N+ +K + Y +
Sbjct: 1 MTNLENICGKFNSSIENMK---LIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKD 57
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
+ + N D RRY+V+ +D + L T
Sbjct: 58 QRVCENVANFIMVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTPNF 113
Query: 656 KKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
+ IP + E + Y+ +ID+ + SL
Sbjct: 114 YNHLFSYFMTLDISKFNPRQIPYTEERQTLLEANKS-VYELFIDETNFECLDER----SL 168
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLKQ 744
Y +Y ++ Y S RT N+K
Sbjct: 169 YDEYKQYCQE---YGYMAASKRTFLANVKN 195
>gi|66391796|ref|YP_238520.1| replication protein [Streptococcus phage 2972]
gi|56718453|gb|AAW27959.1| replication protein [Streptococcus phage 2972]
Length = 271
Score = 40.9 bits (94), Expect = 1.00, Method: Composition-based stats.
Identities = 23/173 (13%), Positives = 52/173 (30%), Gaps = 5/173 (2%)
Query: 4 MQWKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQ 63
M+ + A G+ +IP+ K P + ++ ++ I ++ +
Sbjct: 1 MEMVDYAINYQRMGYSVIPISKNGKTPL-ISFADKPPMTENDIRRVWRDNPDANIALRTD 59
Query: 64 PLYAFDIDSK-DEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTEST 122
+ D+D D ++ E P P + K+
Sbjct: 60 TFFVIDVDMHGDVDGLTNLRNW-EHARLIPPTLQAITPSGGRHIYLKKDPNHPISQNIGM 118
Query: 123 QGHLDILGCGQYFVAYNIHPKTKKEYTWTT--PPHRFKVEDTPLLSEEDVEYL 173
+DI ++ +K Y W P + + PL + ++ +
Sbjct: 119 IEGVDIKAHVNNYILVPPSNNSKGYYEWDKVHSPKDGSITEAPLALIKVLQKM 171
>gi|126323268|ref|XP_001376399.1| PREDICTED: hypothetical protein [Monodelphis domestica]
Length = 703
Score = 40.9 bits (94), Expect = 1.0, Method: Composition-based stats.
Identities = 13/97 (13%), Positives = 38/97 (39%), Gaps = 7/97 (7%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
W+ D + E + SL Y + ++ + ++ + + + G++
Sbjct: 183 QWLLDNYETAEGVSLPRSSLYNHYLRHCQE---HKLDPVNAASFGKLI--RSVFVGLRTR 237
Query: 755 KIEKEWKSKRIIKGLKLKPA--FESVDDNSNIIDFKR 789
++ SK G++LKP + +++ + ++
Sbjct: 238 RLGTRGNSKYHYYGIRLKPDSPLNRLQEDTQYMAMRQ 274
>gi|326475753|gb|EGD99762.1| ATPase family AAA domain-containing protein [Trichophyton tonsurans
CBS 112818]
Length = 415
Score = 40.9 bits (94), Expect = 1.0, Method: Composition-based stats.
Identities = 36/210 (17%), Positives = 74/210 (35%), Gaps = 30/210 (14%)
Query: 439 ETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLG-- 496
+ G++ + ++L +T+ T ++ ++ +E+++ V L
Sbjct: 75 KNGKRRQRKEKLVLTQYEQTIAMDVVAPEDIPVSFDDIGGLDEIIEELKESVIYPLTMPQ 134
Query: 497 --GNKAQRF-----IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAG-- 547
+ + + G G GK+ L + + G + IN S + + ++
Sbjct: 135 LYRTTSSLLSAPSGVLLYGPPGCGKTMLAKALAHESGACF-INLHISTLTEKWYGDSNKL 193
Query: 548 -KANPSLIRLMGSRIVIISETN-------ENDEINAAKIKQ--MTGGDCMTARLNYGNTY 597
A SL R + IV I E + + + +K MT D +T+ G
Sbjct: 194 VNAVFSLARKLEPSIVFIDEIDAVLGTRRSGEHEASGMVKAEFMTHWDGLTSANAMGQ-- 251
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRY 627
P N +++ D+A RR
Sbjct: 252 ---PQRVLLLGATN---RIQDIDEAILRRM 275
>gi|302559769|ref|ZP_07312111.1| N- superfamily bifunctional DNA primase/polymerase [Streptomyces
griseoflavus Tu4000]
gi|302477387|gb|EFL40480.1| N- superfamily bifunctional DNA primase/polymerase [Streptomyces
griseoflavus Tu4000]
Length = 317
Score = 40.9 bits (94), Expect = 1.0, Method: Composition-based stats.
Identities = 21/102 (20%), Positives = 31/102 (30%), Gaps = 7/102 (6%)
Query: 51 ACGFGFVCGVGEQPLYAFDIDSK---DEKTANTFKDTFEILHGTPIVRIGQKPKILIPFR 107
A G+G CG+ L D+D+K D + A + L P + P
Sbjct: 110 ATGYGIACGLPPHHLIGVDLDTKTGTDARAALR-ELALRHLFTIPATVVVLTPSGGRHLW 168
Query: 108 MNKEG--IKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKE 147
+ + G +DI G G Y V
Sbjct: 169 LTGPPDVVVPNSAGRLAPG-IDIRGAGGYLVGPGSRTDHGAY 209
>gi|296119887|ref|ZP_06838441.1| putative ABC transport system [Corynebacterium ammoniagenes DSM
20306]
gi|295967041|gb|EFG80312.1| putative ABC transport system [Corynebacterium ammoniagenes DSM
20306]
Length = 630
Score = 40.9 bits (94), Expect = 1.0, Method: Composition-based stats.
Identities = 24/105 (22%), Positives = 36/105 (34%), Gaps = 12/105 (11%)
Query: 457 GTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKST 516
P EP EF D+ Y E + V+ + + + G G GKST
Sbjct: 354 PLPDDVSEPIFEFDDVTFAYEEDKPVIQSV------SFTAHRGEKVALV--GESGGGKST 405
Query: 517 LMNLIKYA----FGNQYVINAEASDIMQNRPPEAGKANPSLIRLM 557
L+NL+ G V+ A+D+ R + L
Sbjct: 406 LVNLMLGLYQPSHGTLNVLGHNANDLTTARLRASVGVVFQEAFLF 450
>gi|123410881|ref|XP_001303778.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121885182|gb|EAX90848.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 194
Score = 40.9 bits (94), Expect = 1.0, Method: Composition-based stats.
Identities = 31/188 (16%), Positives = 61/188 (32%), Gaps = 16/188 (8%)
Query: 560 RIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV 616
++++ +E D +N+ +K + Y ++ + + N
Sbjct: 2 KLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDSRVCENVANFIMVSNNVVPMK 61
Query: 617 RNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-I 675
D RRY+V+ +D + L T + + I
Sbjct: 62 LESSD---RRYVVVR-TSDSHMQDTEYFDALSETLTSDFYNHLFSYFMTLDISNFNPRQI 117
Query: 676 PEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIST 735
P + E + Y+ +ID+ + + SL SY +Y ++ Y S
Sbjct: 118 PHTEERQTLLEANKS-VYELFIDETDFVSLDER----SLYDSYKQYCQE---YGYMAASK 169
Query: 736 RTVTLNLK 743
RT N+K
Sbjct: 170 RTFLANVK 177
>gi|9632925|ref|NP_049954.1| putative replication protein [Streptococcus phage Sfi19]
gi|5524020|gb|AAD44073.1|AF115102_32 orf271 gp [Streptococcus phage Sfi19]
gi|455527|emb|CAA54617.1| unnamed protein product [Streptococcus phage SFi18]
gi|4049996|gb|AAC97923.1| gp271 [Streptococcus phage Sfi19]
Length = 271
Score = 40.9 bits (94), Expect = 1.0, Method: Composition-based stats.
Identities = 24/174 (13%), Positives = 54/174 (31%), Gaps = 7/174 (4%)
Query: 4 MQWKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQ 63
M+ + A G+ +IP+ K P + ++ ++ I ++ +
Sbjct: 1 MEMVDYAINYQRMGYSVIPISNNSKTPL-ISFADKPPMTENDIRRVWRDNPDANIALRTD 59
Query: 64 PLYAFDIDSK-DEKTANTFKDTFE-ILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTES 121
+ D+D D ++ L + I P + K+
Sbjct: 60 TFFVIDVDMHGDVDGLTNLRNWEHARLIPQTLQAI--TPSGGRHIYLKKDPNHPISQNIG 117
Query: 122 TQGHLDILGCGQYFVAYNIHPKTKKEYTWTT--PPHRFKVEDTPLLSEEDVEYL 173
+DI ++ +K Y W T P + + PL + ++ +
Sbjct: 118 MIEGVDIKAHVNNYILVPPSNNSKGYYEWDTVHSPKDGSITEAPLALIKVLQKM 171
>gi|123204151|ref|XP_001284443.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121845953|gb|EAX71513.1| hypothetical protein TVAG_488810 [Trichomonas vaginalis G3]
Length = 211
Score = 40.5 bits (93), Expect = 1.0, Method: Composition-based stats.
Identities = 36/209 (17%), Positives = 66/209 (31%), Gaps = 19/209 (9%)
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGN 595
M N GK N S+ + +++ +E D +N+ +K + Y +
Sbjct: 1 MTNIENICGKFNSSIENMK---LIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKD 57
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
+ + N D RRY+V+ +D + L T +
Sbjct: 58 QRVCENVANFIMVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDF 113
Query: 656 KKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
+ IP + E + Y+ +ID+ + + SL
Sbjct: 114 YNHLFSYFMTLDISKFNPRQIPHTEERQTLLEANKS-VYELFIDET----DFECLDERSL 168
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLK 743
Y +Y ++ Y S RT N+K
Sbjct: 169 YDEYKQYCQE---YGYMAASKRTFLANVK 194
>gi|78186987|ref|YP_375030.1| ATPase [Chlorobium luteolum DSM 273]
gi|78166889|gb|ABB23987.1| ATPase [Chlorobium luteolum DSM 273]
Length = 245
Score = 40.5 bits (93), Expect = 1.0, Method: Composition-based stats.
Identities = 25/109 (22%), Positives = 46/109 (42%), Gaps = 26/109 (23%)
Query: 503 FIHIRGVGGSGKSTLMNLI---------KYAFGNQYVINAEASDIMQNRPPEAG------ 547
+ + G GSGKSTL+N+I FG++ + A +++ + R G
Sbjct: 47 LVVLLGASGSGKSTLLNIIGGLDTPSSGTLLFGDRNLSTASEAELTEYRRHSIGFVFQFY 106
Query: 548 KANPSLIRLMGSRIVIISETNENDEINAAKI-----------KQMTGGD 585
PSL L ++V + D ++A ++ Q++GG+
Sbjct: 107 NLIPSLSALENVQLVTDIALDPMDAVDALRLVGLGERMQHFPAQLSGGE 155
>gi|19114566|ref|NP_593654.1| exocyst complex subunit Sec10 [Schizosaccharomyces pombe 972h-]
gi|21542227|sp|O13705|SEC10_SCHPO RecName: Full=Exocyst complex component sec10
gi|4867840|emb|CAB11769.2| exocyst complex subunit Sec10 [Schizosaccharomyces pombe]
Length = 811
Score = 40.5 bits (93), Expect = 1.0, Method: Composition-based stats.
Identities = 18/116 (15%), Positives = 44/116 (37%), Gaps = 13/116 (11%)
Query: 473 VSGYFESEEVM--DYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTL--MNLIKYAFGNQ 528
+ F + E++ +F R G ++ + + GKS L + ++ +
Sbjct: 308 IKRVFPNPELVLQTFFQRIFGQSIQNRL-EEVMEIAK-----GKSNLAYLRTLQTVVSSL 361
Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRL---MGSRIVIISETNENDEINAAKIKQM 581
+ A+ I++NR +P + L M +V E ++ + ++ +
Sbjct: 362 RKLVADLKTILENRGFSVSDNSPLSLALNQYMEDLLVPFIEVDDYLKREEHSLRSL 417
>gi|239930266|ref|ZP_04687219.1| hypothetical protein SghaA1_18699 [Streptomyces ghanaensis ATCC
14672]
gi|291438614|ref|ZP_06578004.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
gi|291341509|gb|EFE68465.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
Length = 288
Score = 40.5 bits (93), Expect = 1.0, Method: Composition-based stats.
Identities = 22/110 (20%), Positives = 33/110 (30%), Gaps = 7/110 (6%)
Query: 51 ACGFGFVCGVGEQPLYAFDIDSK---DEKTANTFKDTFEILHGTPIVRIGQKPKILIPFR 107
A G+G CG+ L D+D+K D A + T P + P
Sbjct: 81 ATGYGIACGLPPHHLIGIDLDTKGGTDPSAALR-ELTLRHSFTIPATVVVLTPSGGRHLW 139
Query: 108 MNKEG--IKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPH 155
++ + G +D+ G G Y V T H
Sbjct: 140 LSGPPDVVVPNSAGRLAPG-IDVRGAGGYLVGPGSRTDHGTYTTAPGTAH 188
>gi|224120532|ref|XP_002318353.1| predicted protein [Populus trichocarpa]
gi|222859026|gb|EEE96573.1| predicted protein [Populus trichocarpa]
Length = 746
Score = 40.5 bits (93), Expect = 1.0, Method: Composition-based stats.
Identities = 31/164 (18%), Positives = 56/164 (34%), Gaps = 21/164 (12%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAG---KANPSLIRLMGSR 560
I + G G+GK+ L I G + IN S I E +A +L +
Sbjct: 553 ILLFGPPGTGKTMLAKAIAKEAGASF-INVSMSTITSKWFGEDEKNVRALFTLAAKVSPT 611
Query: 561 IVIISETNE--NDEINAAKIKQMTGGDCMTARLN-YGNTYSESPASFTPFIVPNKHLFVR 617
I+ + E + + + M + + + P + F
Sbjct: 612 IIFVDEVDSMLGQRTRVGEHEAM---RKIKNEFMTHWDGLMTKPGERILVLAATNRPF-- 666
Query: 618 NPDDA----WWRRYIV-IPFDKPIANRDASFAQKLETKYTLEAK 656
+ D+A + RR +V +P I +R+ + L +K E
Sbjct: 667 DLDEAIIRRFERRIMVGLP---SIESRERIL-KTLLSKEKTEGL 706
>gi|326482686|gb|EGE06696.1| ATPase family AAA domain-containing protein 1-B [Trichophyton
equinum CBS 127.97]
Length = 415
Score = 40.5 bits (93), Expect = 1.0, Method: Composition-based stats.
Identities = 36/210 (17%), Positives = 74/210 (35%), Gaps = 30/210 (14%)
Query: 439 ETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLG-- 496
+ G++ + ++L +T+ T ++ ++ +E+++ V L
Sbjct: 75 KNGKRRQRKEKLVLTQYEQTIAMDVVAPEDIPVSFDDIGGLDEIIEELKESVIYPLTMPQ 134
Query: 497 --GNKAQRF-----IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAG-- 547
+ + + G G GK+ L + + G + IN S + + ++
Sbjct: 135 LYRTTSSLLSAPSGVLLYGPPGCGKTMLAKALAHESGACF-INLHISTLTEKWYGDSNKL 193
Query: 548 -KANPSLIRLMGSRIVIISETN-------ENDEINAAKIKQ--MTGGDCMTARLNYGNTY 597
A SL R + IV I E + + + +K MT D +T+ G
Sbjct: 194 VNAVFSLARKLEPSIVFIDEIDAVLGTRRSGEHEASGMVKAEFMTHWDGLTSANAMGQ-- 251
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRY 627
P N +++ D+A RR
Sbjct: 252 ---PQRVLLLGATN---RIQDIDEAILRRM 275
>gi|138374804|gb|ABO76819.1| putative replication protein E1 [Human papillomavirus type 56]
Length = 636
Score = 40.5 bits (93), Expect = 1.0, Method: Composition-based stats.
Identities = 24/179 (13%), Positives = 59/179 (32%), Gaps = 21/179 (11%)
Query: 461 VEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTL-MN 519
EG + + + ++ + + + + L G + + G +GKS M+
Sbjct: 421 DEGGDWKPIVQFLR--YQGVDFISFL-SYFKLFLQG-TPKHNCLVLCGPPNTGKSCFAMS 476
Query: 520 LIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN-DEINAAKI 578
LIK+ G+ +++ L L +++ ++ + E + +
Sbjct: 477 LIKFFQGSVIS-------------FVNSQSHFWLQPLDNAKLGLLDDATEICWKYIDDYL 523
Query: 579 KQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637
+ + G+ ++ + S I N + + R +V F P
Sbjct: 524 RNLVDGNPISLDRKHKQLVQIKCPS--LLITTNINPMLDAKLRYLHSRMLVFQFQNPFP 580
>gi|304406779|ref|ZP_07388434.1| virulence-associated E family protein [Paenibacillus
curdlanolyticus YK9]
gi|304344312|gb|EFM10151.1| virulence-associated E family protein [Paenibacillus
curdlanolyticus YK9]
Length = 807
Score = 40.5 bits (93), Expect = 1.1, Method: Composition-based stats.
Identities = 34/175 (19%), Positives = 57/175 (32%), Gaps = 22/175 (12%)
Query: 493 ALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS 552
A+ G K + + G G GKST + L+ + Y + + GK
Sbjct: 518 AMAPGCKYDQMPILAGPQGLGKSTFLRLLGR---SWYSDSLTTFE---------GKEASE 565
Query: 553 LIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612
LI+ G + + E N + IKQ R YG P + N
Sbjct: 566 LIQ--GIWLNEVGELNGFSKSETGAIKQFLSRTEDIYREPYGRRTKAYPRRGVFWGTTND 623
Query: 613 HLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYI 667
F+++ RR+ P D + S LE + + + + +
Sbjct: 624 SEFLKDATGN--RRFW--PVDVGVQQPTKSVFGLLEEE----VPQIYAEAYMYWQ 670
>gi|170040376|ref|XP_001847977.1| rfx5 [Culex quinquefasciatus]
gi|167863935|gb|EDS27318.1| rfx5 [Culex quinquefasciatus]
Length = 286
Score = 40.5 bits (93), Expect = 1.1, Method: Composition-based stats.
Identities = 14/84 (16%), Positives = 30/84 (35%), Gaps = 5/84 (5%)
Query: 687 RQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746
R + W+ + N+ + + Y + E+ D K +ST +KQ
Sbjct: 77 RSEINHTINWVRSHLEHDPNVSIPKQEVYEDYIAFCER---IDIKPLSTADFGKVMKQ-- 131
Query: 747 FIGGIKREKIEKEWKSKRIIKGLK 770
GI+ ++ S+ ++
Sbjct: 132 VFPGIRPRRLGTRGHSRYCYAAMR 155
>gi|198453554|ref|XP_001359237.2| GA21990 [Drosophila pseudoobscura pseudoobscura]
gi|198132408|gb|EAL28382.2| GA21990 [Drosophila pseudoobscura pseudoobscura]
Length = 1344
Score = 40.5 bits (93), Expect = 1.1, Method: Composition-based stats.
Identities = 12/84 (14%), Positives = 27/84 (32%), Gaps = 5/84 (5%)
Query: 687 RQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746
R + W+ + + + Y Y E+ K +ST +KQ
Sbjct: 299 RSEINHTINWVRSHLEHDAQVSIPKQDVYNDYIAYCER---LSIKPLSTADFGKVMKQ-- 353
Query: 747 FIGGIKREKIEKEWKSKRIIKGLK 770
G++ ++ S+ ++
Sbjct: 354 VFPGVRPRRLGTRGNSRYCYAAMR 377
>gi|195568743|ref|XP_002102373.1| GD19544 [Drosophila simulans]
gi|194198300|gb|EDX11876.1| GD19544 [Drosophila simulans]
Length = 1272
Score = 40.5 bits (93), Expect = 1.1, Method: Composition-based stats.
Identities = 12/84 (14%), Positives = 27/84 (32%), Gaps = 5/84 (5%)
Query: 687 RQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746
R + W+ + + + Y Y E+ K +ST +KQ
Sbjct: 304 RSEINHTINWVRSHLEHDAQVSIPKQDVYNDYIAYCER---LSIKPLSTADFGKVMKQ-- 358
Query: 747 FIGGIKREKIEKEWKSKRIIKGLK 770
G++ ++ S+ ++
Sbjct: 359 VFPGVRPRRLGTRGNSRYCYAAMR 382
>gi|195502302|ref|XP_002098163.1| GE24099 [Drosophila yakuba]
gi|194184264|gb|EDW97875.1| GE24099 [Drosophila yakuba]
Length = 1281
Score = 40.5 bits (93), Expect = 1.1, Method: Composition-based stats.
Identities = 12/84 (14%), Positives = 27/84 (32%), Gaps = 5/84 (5%)
Query: 687 RQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746
R + W+ + + + Y Y E+ K +ST +KQ
Sbjct: 305 RSEINHTINWVRSHLEHDAQVSIPKQDVYNDYIAYCER---LSIKPLSTADFGKVMKQ-- 359
Query: 747 FIGGIKREKIEKEWKSKRIIKGLK 770
G++ ++ S+ ++
Sbjct: 360 VFPGVRPRRLGTRGNSRYCYAAMR 383
>gi|195451141|ref|XP_002072785.1| GK13786 [Drosophila willistoni]
gi|194168870|gb|EDW83771.1| GK13786 [Drosophila willistoni]
Length = 1388
Score = 40.5 bits (93), Expect = 1.1, Method: Composition-based stats.
Identities = 12/84 (14%), Positives = 27/84 (32%), Gaps = 5/84 (5%)
Query: 687 RQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746
R + W+ + + + Y Y E+ K +ST +KQ
Sbjct: 318 RSEINHTINWVRSHLEHDAQVSIPKQDVYNDYIAYCER---LSIKPLSTADFGKVMKQ-- 372
Query: 747 FIGGIKREKIEKEWKSKRIIKGLK 770
G++ ++ S+ ++
Sbjct: 373 VFPGVRPRRLGTRGNSRYCYAAMR 396
>gi|195392154|ref|XP_002054724.1| GJ22650 [Drosophila virilis]
gi|194152810|gb|EDW68244.1| GJ22650 [Drosophila virilis]
Length = 1344
Score = 40.5 bits (93), Expect = 1.1, Method: Composition-based stats.
Identities = 12/84 (14%), Positives = 27/84 (32%), Gaps = 5/84 (5%)
Query: 687 RQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746
R + W+ + + + Y Y E+ K +ST +KQ
Sbjct: 311 RSEINHTINWVRSHLEHDAQVSIPKQDVYNDYIAYCER---LSIKPLSTADFGKVMKQ-- 365
Query: 747 FIGGIKREKIEKEWKSKRIIKGLK 770
G++ ++ S+ ++
Sbjct: 366 VFPGVRPRRLGTRGNSRYCYAAMR 389
>gi|195343983|ref|XP_002038570.1| GM10553 [Drosophila sechellia]
gi|194133591|gb|EDW55107.1| GM10553 [Drosophila sechellia]
Length = 1280
Score = 40.5 bits (93), Expect = 1.1, Method: Composition-based stats.
Identities = 12/84 (14%), Positives = 27/84 (32%), Gaps = 5/84 (5%)
Query: 687 RQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746
R + W+ + + + Y Y E+ K +ST +KQ
Sbjct: 304 RSEINHTINWVRSHLEHDAQVSIPKQDVYNDYIAYCER---LSIKPLSTADFGKVMKQ-- 358
Query: 747 FIGGIKREKIEKEWKSKRIIKGLK 770
G++ ++ S+ ++
Sbjct: 359 VFPGVRPRRLGTRGNSRYCYAAMR 382
>gi|195152157|ref|XP_002017003.1| GL22063 [Drosophila persimilis]
gi|194112060|gb|EDW34103.1| GL22063 [Drosophila persimilis]
Length = 1380
Score = 40.5 bits (93), Expect = 1.1, Method: Composition-based stats.
Identities = 12/84 (14%), Positives = 27/84 (32%), Gaps = 5/84 (5%)
Query: 687 RQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746
R + W+ + + + Y Y E+ K +ST +KQ
Sbjct: 299 RSEINHTINWVRSHLEHDAQVSIPKQDVYNDYIAYCER---LSIKPLSTADFGKVMKQ-- 353
Query: 747 FIGGIKREKIEKEWKSKRIIKGLK 770
G++ ++ S+ ++
Sbjct: 354 VFPGVRPRRLGTRGNSRYCYAAMR 377
>gi|195109963|ref|XP_001999551.1| GI24583 [Drosophila mojavensis]
gi|193916145|gb|EDW15012.1| GI24583 [Drosophila mojavensis]
Length = 1378
Score = 40.5 bits (93), Expect = 1.1, Method: Composition-based stats.
Identities = 12/84 (14%), Positives = 27/84 (32%), Gaps = 5/84 (5%)
Query: 687 RQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746
R + W+ + + + Y Y E+ K +ST +KQ
Sbjct: 310 RSEINHTINWVRSHLEHDAQVSIPKQDVYNDYIAYCER---LSIKPLSTADFGKVMKQ-- 364
Query: 747 FIGGIKREKIEKEWKSKRIIKGLK 770
G++ ++ S+ ++
Sbjct: 365 VFPGVRPRRLGTRGNSRYCYAAMR 388
>gi|194899061|ref|XP_001979081.1| GG10435 [Drosophila erecta]
gi|190650784|gb|EDV48039.1| GG10435 [Drosophila erecta]
Length = 1278
Score = 40.5 bits (93), Expect = 1.1, Method: Composition-based stats.
Identities = 12/84 (14%), Positives = 27/84 (32%), Gaps = 5/84 (5%)
Query: 687 RQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746
R + W+ + + + Y Y E+ K +ST +KQ
Sbjct: 302 RSEINHTINWVRSHLEHDAQVSIPKQDVYNDYIAYCER---LSIKPLSTADFGKVMKQ-- 356
Query: 747 FIGGIKREKIEKEWKSKRIIKGLK 770
G++ ++ S+ ++
Sbjct: 357 VFPGVRPRRLGTRGNSRYCYAAMR 380
>gi|123346584|ref|XP_001295005.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121873490|gb|EAX82075.1| hypothetical protein TVAG_092290 [Trichomonas vaginalis G3]
Length = 211
Score = 40.5 bits (93), Expect = 1.1, Method: Composition-based stats.
Identities = 36/209 (17%), Positives = 66/209 (31%), Gaps = 19/209 (9%)
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGN 595
M N GK N S+ + +++ +E D +N+ +K + Y +
Sbjct: 1 MTNLENICGKFNSSIENMK---LIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKD 57
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
+ + N D RRY+V+ +D + L T +
Sbjct: 58 QRVCENVANFIMVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDF 113
Query: 656 KKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
+ IP + E + Y+ +ID+ + + SL
Sbjct: 114 YNHLFSYFMTLDISKFNPRQIPHTEERQTLLEANKS-VYELFIDET----DFECLDERSL 168
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLK 743
Y +Y ++ Y S RT N+K
Sbjct: 169 YDEYKQYCQE---YGYMAASKRTFLANVK 194
>gi|24644617|ref|NP_649656.1| CG9727 [Drosophila melanogaster]
gi|10727126|gb|AAF54121.2| CG9727 [Drosophila melanogaster]
gi|51092155|gb|AAT94491.1| LD40317p [Drosophila melanogaster]
gi|220943436|gb|ACL84261.1| CG9727-PA [synthetic construct]
Length = 1280
Score = 40.5 bits (93), Expect = 1.1, Method: Composition-based stats.
Identities = 12/84 (14%), Positives = 27/84 (32%), Gaps = 5/84 (5%)
Query: 687 RQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746
R + W+ + + + Y Y E+ K +ST +KQ
Sbjct: 304 RSEINHTINWVRSHLEHDAQVSIPKQDVYNDYIAYCER---LSIKPLSTADFGKVMKQ-- 358
Query: 747 FIGGIKREKIEKEWKSKRIIKGLK 770
G++ ++ S+ ++
Sbjct: 359 VFPGVRPRRLGTRGNSRYCYAAMR 382
>gi|238023472|ref|YP_002907705.1| AAA ATPase, central domain protein [Burkholderia glumae BGR1]
gi|237880525|gb|ACR32854.1| AAA ATPase, central domain protein [Burkholderia glumae BGR1]
Length = 327
Score = 40.5 bits (93), Expect = 1.1, Method: Composition-based stats.
Identities = 34/207 (16%), Positives = 71/207 (34%), Gaps = 17/207 (8%)
Query: 455 STGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGK 514
T F E S E + ++ + D + G + ++ + G G+GK
Sbjct: 84 HTPARFAELVLSDEVQERLNRVLLEQRQKDRLAKY------GLHPRRKLLF-TGPPGTGK 136
Query: 515 STLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEIN 574
+ + S I + A K ++ +R V + DE +
Sbjct: 137 TMSTAALATELKLPLYTIVLDSLITRFMGETAAKLRLVFDQIKQTRAVYL-----FDEFD 191
Query: 575 AAKIKQMTGGDCMTARLNYGNT--YSESPASFTPFIVPNKHLFVRNPDDAWWRRYI-VIP 631
A ++ + D R + + E +S + + H + D A +RR+ +I
Sbjct: 192 AIGTQRGSQNDVGEIRRVLNSFLLFVEQDSSESLIVAATNHPEL--LDKALYRRFDDIIR 249
Query: 632 FDKPIANRDASFAQKLETKYTLEAKKW 658
F+KP + + + + + + W
Sbjct: 250 FEKPDQKQIKAIIENRLSMFEMSDLDW 276
>gi|326500946|dbj|BAJ95139.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326507238|dbj|BAJ95696.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 394
Score = 40.5 bits (93), Expect = 1.1, Method: Composition-based stats.
Identities = 30/145 (20%), Positives = 54/145 (37%), Gaps = 14/145 (9%)
Query: 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGK---ANPSLIRLM 557
Q+ + + G G+GK+ L I G + IN S++M +A K A SL +
Sbjct: 120 QKGVLLYGPPGTGKTMLAKAIAKESGAVF-INVRISNLMSKWFGDAQKLVSAVFSLANKL 178
Query: 558 GSRIVIISETNE--NDEINAAKIKQMTGGDCMTARLNYG-NTYSESPASFTPFIVPNKHL 614
I+ I E + N + +T M + ++ + +
Sbjct: 179 QPAIIFIDEVDSFLGQRRNTDH-EALT---NMKTEFMSLWDGFTTDQNARVMVLAATNRP 234
Query: 615 FVRNPDDAWWRRYIVIPFDKPIANR 639
D+A RR+ I F+ + +R
Sbjct: 235 --SELDEAILRRFTQI-FEIGVPSR 256
>gi|259507363|ref|ZP_05750263.1| AAA family ATPase [Corynebacterium efficiens YS-314]
gi|259165074|gb|EEW49628.1| AAA family ATPase [Corynebacterium efficiens YS-314]
Length = 449
Score = 40.5 bits (93), Expect = 1.1, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSR 560
+ + + G G+GK+T+ +LI A G+++V + S ++ +A LI G+R
Sbjct: 65 EASVILYGPPGTGKTTIASLISAATGDRFVALSALSSGVKEVREVINRARTDLI--HGAR 122
Query: 561 IVIISE 566
V+ +
Sbjct: 123 TVLFID 128
>gi|294678256|ref|YP_003578871.1| virulence-associated protein E [Rhodobacter capsulatus SB 1003]
gi|294477076|gb|ADE86464.1| virulence-associated protein E [Rhodobacter capsulatus SB 1003]
Length = 851
Score = 40.5 bits (93), Expect = 1.1, Method: Composition-based stats.
Identities = 45/249 (18%), Positives = 80/249 (32%), Gaps = 30/249 (12%)
Query: 485 YFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544
+ V G KA + + G G+ KST + ++ + P
Sbjct: 571 WLISAVARIFRPGVKADHMLILEGPQGARKSTAIKVLAG------------EAWFTDELP 618
Query: 545 EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604
E G + ++ + G IV I+E + ++IK R YG E P
Sbjct: 619 ELGSKDAAI-HMQGVWIVEIAELDAIGRAEVSRIKAFLTRTTDRFRPPYGRYTVEVPRQ- 676
Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVK 664
+ D+ RR+ + D + + + EA F +G
Sbjct: 677 -CVFAGTVNPDTYLRDETGNRRF----WPLRCGTIDIAALARDRDQLWAEAVHRFREGAI 731
Query: 665 AYISKGLDVDIPEVCLKA--KEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYR 722
+I D P + +A +E R D + A ID H+ Y +++
Sbjct: 732 WWI------DDPALLAEAATAQEARYQADAWDARIDRWLTHDTRSVNRGHA---GYEDWQ 782
Query: 723 EQELNYDRK 731
+E+
Sbjct: 783 NEEVERPEP 791
>gi|25028305|ref|NP_738359.1| recombination factor protein RarA [Corynebacterium efficiens
YS-314]
gi|23493589|dbj|BAC18559.1| conserved hypothetical protein [Corynebacterium efficiens YS-314]
Length = 452
Score = 40.5 bits (93), Expect = 1.1, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSR 560
+ + + G G+GK+T+ +LI A G+++V + S ++ +A LI G+R
Sbjct: 68 EASVILYGPPGTGKTTIASLISAATGDRFVALSALSSGVKEVREVINRARTDLI--HGAR 125
Query: 561 IVIISE 566
V+ +
Sbjct: 126 TVLFID 131
>gi|320591966|gb|EFX04405.1| glycoside hydrolase [Grosmannia clavigera kw1407]
Length = 779
Score = 40.5 bits (93), Expect = 1.1, Method: Composition-based stats.
Identities = 15/76 (19%), Positives = 29/76 (38%), Gaps = 6/76 (7%)
Query: 652 TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEE--RQGTDTYQAWIDDCCDIGENLWE 709
L+ W ++G+ + +G PE ++ +T Q + D N E
Sbjct: 246 GLDIPGWAIRGMM--LDEGRHYHPPEFIIELC-SYMSFFKQNTLQLHLSDNLYHNPNYTE 302
Query: 710 E-SHSLAKSYSEYREQ 724
E S+ L + + E+
Sbjct: 303 EQSNELYARFRLWSEE 318
>gi|123177581|ref|XP_001280125.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121831445|gb|EAX67195.1| hypothetical protein TVAG_590280 [Trichomonas vaginalis G3]
Length = 211
Score = 40.5 bits (93), Expect = 1.1, Method: Composition-based stats.
Identities = 36/210 (17%), Positives = 65/210 (30%), Gaps = 19/210 (9%)
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGN 595
M N GK N S+ + +++ +E D +N+ +K + Y +
Sbjct: 1 MTNLENICGKFNSSIENMK---LIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKD 57
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
+ + N D RRY+V+ +D + L T +
Sbjct: 58 QRVCENVANFIMVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDF 113
Query: 656 KKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
+ IP + E + Y+ +ID+ + SL
Sbjct: 114 YNHLFSYFMTLDISKFNPRQIPYTEERQTLLEANKS-VYELFIDETNFECLDER----SL 168
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLKQ 744
Y +Y ++ Y S RT N+K
Sbjct: 169 YDEYKQYCQE---YGYMAASKRTFLANVKN 195
>gi|9627260|ref|NP_041743.1| envelope protein [Human papillomavirus type 10]
gi|549216|sp|P36720|VE1_HPV10 RecName: Full=Replication protein E1; AltName: Full=ATP-dependent
helicase E1
gi|396904|emb|CAA52491.1| envelope protein [Human papillomavirus type 10]
Length = 681
Score = 40.5 bits (93), Expect = 1.1, Method: Composition-based stats.
Identities = 26/178 (14%), Positives = 51/178 (28%), Gaps = 24/178 (13%)
Query: 462 EGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLI 521
+ +P +FL + E + + C L G + + G +GKS +
Sbjct: 470 DWKPIVQFLRY-----QDVEFIPFL--CAFKTFLQGVPKKSCLVFYGPADTGKSYFCMSL 522
Query: 522 KYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN--DEINAAKIK 579
G + A +S + L L ++I ++ + + I+
Sbjct: 523 LRFLGGAVISYANSSS------------HFWLQPLSEAKIGLLDDATSQCWNYIDTYLRN 570
Query: 580 QMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637
+ G R + + P I N + R + F P
Sbjct: 571 ALDGNQICVDRKHRALLQLKCPP---LLITTNINPLTDERWKFLRSRLQLFTFKNPFP 625
>gi|260787763|ref|XP_002588921.1| hypothetical protein BRAFLDRAFT_125428 [Branchiostoma floridae]
gi|229274093|gb|EEN44932.1| hypothetical protein BRAFLDRAFT_125428 [Branchiostoma floridae]
Length = 405
Score = 40.5 bits (93), Expect = 1.1, Method: Composition-based stats.
Identities = 28/145 (19%), Positives = 52/145 (35%), Gaps = 17/145 (11%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL---IRLMGSR 560
+ + G G+GK+ L + + + I S+++Q E + L R
Sbjct: 185 VLLYGPPGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPS 243
Query: 561 IVIISETNENDEINAAKIKQMTGGDC----MTARLNYGNTYSESPASFTPFIVPNKHLFV 616
I+ + E D I +++++ +GGD L E+ + + N +
Sbjct: 244 IIFMDEI---DSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEAHQNIKVVMATN---RI 297
Query: 617 RNPDDAWWR--RY-IVIPFDKPIAN 638
D A R R I F P +
Sbjct: 298 DILDSALLRPGRIDRKIEFPAPNED 322
>gi|194744279|ref|XP_001954622.1| GF16654 [Drosophila ananassae]
gi|190627659|gb|EDV43183.1| GF16654 [Drosophila ananassae]
Length = 1327
Score = 40.5 bits (93), Expect = 1.1, Method: Composition-based stats.
Identities = 12/84 (14%), Positives = 27/84 (32%), Gaps = 5/84 (5%)
Query: 687 RQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746
R + W+ + + + Y Y E+ K +ST +KQ
Sbjct: 311 RSEINHTINWVRSHLEHDAKVSIPKQDVYNDYIAYCER---LSIKPLSTADFGKVMKQ-- 365
Query: 747 FIGGIKREKIEKEWKSKRIIKGLK 770
G++ ++ S+ ++
Sbjct: 366 VFPGVRPRRLGTRGNSRYCYAAMR 389
>gi|241239914|ref|XP_002401587.1| hypothetical protein IscW_ISCW003905 [Ixodes scapularis]
gi|215496210|gb|EEC05851.1| hypothetical protein IscW_ISCW003905 [Ixodes scapularis]
Length = 317
Score = 40.5 bits (93), Expect = 1.2, Method: Composition-based stats.
Identities = 19/95 (20%), Positives = 33/95 (34%), Gaps = 7/95 (7%)
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK--IKQMTGGDCMTARLNYGNT 596
M NR + N R + +E + + + + KQ TGGD + R Y
Sbjct: 1 MDNRMDATFREN-----AQEVRFAVENEISVLNMDDGGRRKFKQFTGGDRVANRQPYDKC 55
Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIP 631
S+ + N ++ A R ++ P
Sbjct: 56 NSDFHITAKFVTASNDLPYISKTMQAEQSRLMITP 90
>gi|323127970|gb|ADX25267.1| ABC-type cobalt transport system, ATPase component CbiO
[Streptococcus dysgalactiae subsp. equisimilis ATCC
12394]
Length = 484
Score = 40.5 bits (93), Expect = 1.2, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 503 FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
I + G GSGKST + L+ + Y + S
Sbjct: 51 LIVLCGPSGSGKSTFLKLLNGLIPDYYTGELQGSL 85
>gi|251783246|ref|YP_002997551.1| cobalt transport ATP-binding protein cbiO [Streptococcus
dysgalactiae subsp. equisimilis GGS_124]
gi|242391878|dbj|BAH82337.1| cobalt transport ATP-binding protein cbiO [Streptococcus
dysgalactiae subsp. equisimilis GGS_124]
Length = 491
Score = 40.5 bits (93), Expect = 1.2, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 503 FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
I + G GSGKST + L+ + Y + S
Sbjct: 58 LIVLCGPSGSGKSTFLKLLNGLIPDYYTGELQGSL 92
>gi|149054557|gb|EDM06374.1| peptidase (prosome, macropain) 26S subunit, ATPase 5, isoform CRA_c
[Rattus norvegicus]
Length = 289
Score = 40.5 bits (93), Expect = 1.2, Method: Composition-based stats.
Identities = 28/145 (19%), Positives = 51/145 (35%), Gaps = 17/145 (11%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL---IRLMGSR 560
+ + G G+GK+ L + + + I S+++Q E + L R
Sbjct: 100 VLLYGPPGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPS 158
Query: 561 IVIISETNENDEINAAKIKQMTGGDC----MTARLNYGNTYSESPASFTPFIVPNKHLFV 616
I+ + E D I +++++ +GGD L E+ + + N +
Sbjct: 159 IIFMDEI---DSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATN---RI 212
Query: 617 RNPDDAWWR--RY-IVIPFDKPIAN 638
D A R R I F P
Sbjct: 213 DILDSALLRPGRIDRKIEFPPPNEE 237
>gi|123297023|ref|XP_001290822.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121863971|gb|EAX77892.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 211
Score = 40.5 bits (93), Expect = 1.2, Method: Composition-based stats.
Identities = 35/210 (16%), Positives = 63/210 (30%), Gaps = 19/210 (9%)
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGN 595
M N GK N S+ + +++ +E D +N+ +K + Y +
Sbjct: 1 MTNLENICGKFNSSIENMK---LIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKD 57
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
+ + N D RRY+V+ +D + L T
Sbjct: 58 QRVCENVANFIMVSNNVVPMKLESSD---RRYVVVR-TSEAHMQDTEYFDDLAETLTPNF 113
Query: 656 KKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
+ IP + E + Y+ +ID+ + +
Sbjct: 114 YNHLFSYFMTLDISKFNPRQIPYTEERQTLLEANKS-VYELFIDETNFVSLDER------ 166
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLKQ 744
Y EY++ Y S RT N+K
Sbjct: 167 -SLYDEYKQYCQEYGYMAASKRTFLANVKN 195
>gi|123242990|ref|XP_001288362.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121857450|gb|EAX75432.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 211
Score = 40.5 bits (93), Expect = 1.3, Method: Composition-based stats.
Identities = 35/210 (16%), Positives = 64/210 (30%), Gaps = 19/210 (9%)
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGN 595
M N GK N S+ + +++ +E D +N+ +K + Y +
Sbjct: 1 MTNLENICGKFNSSIENMK---LIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKD 57
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
+ + N D RRY+V+ +D + L T +
Sbjct: 58 QRVCENVANFIMVSNNTVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDF 113
Query: 656 KKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
+ IP + E + Y+ +ID+ + +
Sbjct: 114 YNHLFSYFMTLDISKFNPRQIPHTEERQTLLEANKS-VYELFIDETDFVSLDER------ 166
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLKQ 744
Y EY++ Y S RT N+K
Sbjct: 167 -SLYDEYKQYCQEYGYMAASKRTFLANVKN 195
>gi|327349483|gb|EGE78340.1| cell cycle checkpoint protein rad17 [Ajellomyces dermatitidis ATCC
18188]
Length = 1002
Score = 40.5 bits (93), Expect = 1.3, Method: Composition-based stats.
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 473 VSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFG 526
+ ++ + R + GG QR + +RG GSGKST ++L+ A G
Sbjct: 325 LDELVVNKRKVSDVQRWLVDVF-GGKSKQRVLVLRGPAGSGKSTTISLLSKALG 377
>gi|123508218|ref|XP_001329584.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121912630|gb|EAY17449.1| hypothetical protein TVAG_493910 [Trichomonas vaginalis G3]
Length = 211
Score = 40.5 bits (93), Expect = 1.3, Method: Composition-based stats.
Identities = 36/210 (17%), Positives = 65/210 (30%), Gaps = 19/210 (9%)
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGN 595
M N GK N S+ + +++ +E D +N+ +K + Y +
Sbjct: 1 MTNIENICGKFNSSIENMK---LIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKD 57
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
+ + N D RRY+V+ +D + L T +
Sbjct: 58 QRVCENVANFIMVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDF 113
Query: 656 KKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
+ IP + E + Y+ +ID+ + SL
Sbjct: 114 YNHLFSYFMTLDISKFNPRQIPHTEERQTLLEANKS-VYELFIDETNFECLDER----SL 168
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLKQ 744
Y +Y ++ Y S RT N+K
Sbjct: 169 YDEYKQYCQE---YGYMTASKRTFLANVKN 195
>gi|85859561|ref|YP_461763.1| AAA family ATPase [Syntrophus aciditrophicus SB]
gi|85722652|gb|ABC77595.1| ATPases of the AAA family [Syntrophus aciditrophicus SB]
Length = 373
Score = 40.5 bits (93), Expect = 1.3, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 45/135 (33%), Gaps = 14/135 (10%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANP--SLIRLMGSRI 561
I G G+GK+ I YV A + ++ +R++ +
Sbjct: 146 ILFFGPPGTGKTHFARAIAGILSWWYVEIAPSMLMVDGMEKIGANLRSIMEKVRILDELV 205
Query: 562 VIISETNE--NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNP 619
+ I E E N +I + +T ++ + + +++
Sbjct: 206 LFIDEFEEIAASRDNGDRIDK-----SITNEFLKQLPLLKNQGNKILLVCATN--YIQQL 258
Query: 620 DDAWWR--RY-IVIP 631
D+A R R+ +IP
Sbjct: 259 DEAMLRPGRFDCIIP 273
>gi|332983343|ref|YP_004464784.1| virulence-associated E family protein [Mahella australiensis 50-1
BON]
gi|332701021|gb|AEE97962.1| virulence-associated E family protein [Mahella australiensis 50-1
BON]
Length = 795
Score = 40.5 bits (93), Expect = 1.3, Method: Composition-based stats.
Identities = 68/432 (15%), Positives = 122/432 (28%), Gaps = 85/432 (19%)
Query: 318 IYKKGHFLYTAD------TKAWYKKDKNNVYIWSLTLDKITA-----------SIMNFLV 360
+ G F Y+ K D ++ + DK T ++ +
Sbjct: 267 VIYDGKFAYSHHATDPACGKLLNSFDLVRIHRFRDLDDKTTEDTPPGKLPSFRAMTELAI 326
Query: 361 SMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIF----- 415
+ +EE + K+ + W +N + ++ +E
Sbjct: 327 KDERVKEQFAEERKAQAKSEFNNENWQKQLELEKNGAVKNTLRNLTLIIENDPALKGIVF 386
Query: 416 --------------SITSDLL--DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTP 459
D+ L +D G E+ +TK
Sbjct: 387 NQLSDSLEIKGEVPWQHPSRFWRDADDAQLIS---YIDSRYGTFSARNYEIAVTKVADD- 442
Query: 460 FVEGEPSQEFLDLVSGYFE----SEEVMDYF----------------TRCVGMALLGGNK 499
P +EF+D + + ++DY + L G K
Sbjct: 443 -RSYHPIREFIDTLPEWDGIPRVDTLLVDYLGAVDNAYVRSVTRKTLCAAIARVLTPGIK 501
Query: 500 AQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGS 559
+ + G G GKSTL I G + + SD E +L G
Sbjct: 502 FDSMLVLNGPQGGGKSTL---IAKLGGEWFSDSLSLSDTKDKTAAE---------KLQGY 549
Query: 560 RIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPN-KHLFVRN 618
I+ I E + ++ R ++G + F N + ++R+
Sbjct: 550 WILEIGELAGLKKAELETLRSFLSRQNDIYRASFGRRATPHMRQCVFFGTTNAEKGYLRD 609
Query: 619 PDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEV 678
RR+ + + AQ + EA + G K Y+ GL+
Sbjct: 610 TTGN--RRFWPVKTPGNGTKKSWQLAQSEVLQIWAEALAYVKAGEKLYLDPGLE------ 661
Query: 679 CLKAKEEERQGT 690
AKEE+R+
Sbjct: 662 -KLAKEEQREAM 672
>gi|300772203|ref|ZP_07082073.1| N- superfamily bifunctional DNA primase/polymerase
[Sphingobacterium spiritivorum ATCC 33861]
gi|300760506|gb|EFK57332.1| N- superfamily bifunctional DNA primase/polymerase
[Sphingobacterium spiritivorum ATCC 33861]
Length = 859
Score = 40.5 bits (93), Expect = 1.3, Method: Composition-based stats.
Identities = 23/125 (18%), Positives = 43/125 (34%), Gaps = 15/125 (12%)
Query: 509 VGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN 568
GGSGK+ L+ G + A S + + A + G+R+ + +
Sbjct: 580 GGGSGKNIFAGLLANVIG---MSTASGSMVKWDDKFYA-------VWKPGNRLYFVPDLP 629
Query: 569 ENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYI 628
+ I+ +K + Y S TP ++ N + + D RR
Sbjct: 630 K--VIDWTFLKNAIENPLI--NKKYDREIS-INMQETPKLLLNTNYSFADVDGGLKRRIR 684
Query: 629 VIPFD 633
++ F
Sbjct: 685 IVEFT 689
>gi|302544086|ref|ZP_07296428.1| N- superfamily bifunctional DNA primase/polymerase [Streptomyces
hygroscopicus ATCC 53653]
gi|302461704|gb|EFL24797.1| N- superfamily bifunctional DNA primase/polymerase [Streptomyces
himastatinicus ATCC 53653]
Length = 303
Score = 40.5 bits (93), Expect = 1.3, Method: Composition-based stats.
Identities = 28/185 (15%), Positives = 47/185 (25%), Gaps = 16/185 (8%)
Query: 51 ACGFGFVCGVGEQPLYAFDIDSKDEKTANT----FKDTFEILHGTPIVRIGQKPKILIPF 106
A G+G CG L D+D K E + + P P
Sbjct: 80 ATGYGIACGCAPHHLIGVDLDLKHEPRVDGAAALARLARRYAFAVPHTVTVLTPGGGRHL 139
Query: 107 -RMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEY------TW---TTPPHR 156
G+ + +DI G G Y V + W PP
Sbjct: 140 WLCGPPGLGVPNSAGRIAPGIDIRGTGGYLVGPGSATSRGRYRLAPGSPAWHPAPVPPEL 199
Query: 157 FKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSC 216
+ P+ + + + P ++ N + A+ +
Sbjct: 200 LSLVQPPVRTPPERATARP--SAVGAPGRDAALVRFVRESQEGRRNDRLFWAACRAYEAG 257
Query: 217 FGEEF 221
G+E
Sbjct: 258 AGDEL 262
>gi|242053661|ref|XP_002455976.1| hypothetical protein SORBIDRAFT_03g028368 [Sorghum bicolor]
gi|241927951|gb|EES01096.1| hypothetical protein SORBIDRAFT_03g028368 [Sorghum bicolor]
Length = 736
Score = 40.5 bits (93), Expect = 1.3, Method: Composition-based stats.
Identities = 30/140 (21%), Positives = 51/140 (36%), Gaps = 19/140 (13%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGK---ANPSLIRLMGSR 560
I + G G+GK+ L I G + +N S IM EA K A SL +
Sbjct: 477 ILLFGPPGTGKTMLAKAIANEAGASF-MNISMSTIMSKWCGEAEKSIQALFSLAAKIAPA 535
Query: 561 IVIISETNE----NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV 616
I+ + E + + N ++ + + M + + P+ + F
Sbjct: 536 IIFMDEVDSLLGTRERSNENEVSRRIKNEFM----MHWDGVLSKPSENILVLAATNRPF- 590
Query: 617 RNPDDAWWRRYIVIPFDKPI 636
+ D+A RR F+ I
Sbjct: 591 -DLDNAIIRR-----FEHRI 604
>gi|190151436|ref|YP_001974347.1| putative replication protein [Streptococcus phage PH15]
gi|190014430|emb|CAQ57816.1| hypothetical protein [Streptococcus phage PH15]
Length = 273
Score = 40.5 bits (93), Expect = 1.3, Method: Composition-based stats.
Identities = 33/160 (20%), Positives = 55/160 (34%), Gaps = 21/160 (13%)
Query: 1 MPVMQWKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEK----IDKLPACGFGF 56
MP M KE A Q GF +IP+ +K P + ++ +S+ + D P
Sbjct: 1 MPSM--KEYALQYQKLGFSVIPINPKNKMPL-IDFADKPPMSASEIENFWDGFPNANIAL 57
Query: 57 VCGVGEQPLYAFDIDSKDEKTANTFKDT-----FEILHGTPIVRIGQKPKILIPFRMNKE 111
+ DID +N F+ +++ T + K L F+ + E
Sbjct: 58 R----TTNFFVIDID--KHGKSNGFESLKNWEHLDLIEPTLQAKTASGGKHLFYFKRDDE 111
Query: 112 GIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWT 151
I + +DI +V K +Y W
Sbjct: 112 PITQMIG---FLAGVDIKAHENNYVLVAPSATDKGQYEWD 148
>gi|168822441|ref|ZP_02834441.1| putative phage-related protein [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
gi|205341122|gb|EDZ27886.1| putative phage-related protein [Salmonella enterica subsp. enterica
serovar Weltevreden str. HI_N05-537]
Length = 884
Score = 40.1 bits (92), Expect = 1.3, Method: Composition-based stats.
Identities = 38/228 (16%), Positives = 72/228 (31%), Gaps = 31/228 (13%)
Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELY------------ITKSTGTPFVEGEPSQEFL 470
D S+ + + D G+ + E Y +T S E + ++
Sbjct: 452 DYSAWLFN-RVAVCD---GRLYEMNDEDYFEINHASVKSLSLTPSLDLNPKLNEFTTGWI 507
Query: 471 DLVSGYFESEEVMDYFTRCVGMALLGGNKA--QRFIHI--RGVGGSGKSTLMNLIKYAFG 526
D + F + + +G + + F + G G+GKSTL+ + G
Sbjct: 508 DDIWTAFGEKGYVA-LAFWLGSLFAEQIRERDKSFPFLEIVGEPGTGKSTLIEFLWKLAG 566
Query: 527 N-QYVINAEASDIMQNRPPEAGKANPSLIRLM-GSRIVIISETNENDEINAAKIKQMTGG 584
+Y + R + + L+ G R ++ + + ++K + G
Sbjct: 567 REEYEGFDPSKSTAAARGRNFAQVGNLPVVLIEGDR---TTDNAKQRAFDWDELKSLYNG 623
Query: 585 DCMTARLNYG--NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVI 630
A N E P + I N + A+ R I I
Sbjct: 624 RASRAVGIKSNNNETYEPPFRGSIVIAQNAD---TDGSKAFLERIIHI 668
>gi|123359946|ref|XP_001295816.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121874988|gb|EAX82886.1| hypothetical protein TVAG_223110 [Trichomonas vaginalis G3]
Length = 211
Score = 40.1 bits (92), Expect = 1.3, Method: Composition-based stats.
Identities = 38/209 (18%), Positives = 67/209 (32%), Gaps = 19/209 (9%)
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGN 595
M N GK N S+ + +++ +E D +N+ +K + Y +
Sbjct: 1 MTNLENICGKFNSSIENMK---LIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKD 57
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
+ + N D RRY+V+ +D + L T +
Sbjct: 58 QIVCENVANFIMVSNNAVPMKFESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDF 113
Query: 656 KKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
+ IP + E + Y+ +I++ E L E+S
Sbjct: 114 YNHLFSYFMTLDISKFNPRQIPHTEERQTLLEANKS-VYELFIEESDF--ECLDEKS--- 167
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLK 743
Y EY++ Y S RT N+K
Sbjct: 168 --LYDEYKQYCQEYGYMPASKRTFLANVK 194
>gi|320167453|gb|EFW44352.1| conserved hypothetical protein [Capsaspora owczarzaki ATCC 30864]
Length = 848
Score = 40.1 bits (92), Expect = 1.3, Method: Composition-based stats.
Identities = 19/105 (18%), Positives = 37/105 (35%), Gaps = 16/105 (15%)
Query: 448 KELYITKSTGTPFVEGEPSQEFLDLVS--------GYFESEEVMDYFTRCVGMALLGGNK 499
+L IT + P + +L+S Y + G +
Sbjct: 197 PDLIITLQ-DVSYWIPTPRRSLKELMSRKKKPSSGQVVPERPKRIYLLNHI----TGTIR 251
Query: 500 AQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544
++ + G G+GKSTL+++I G + E + + +P
Sbjct: 252 PKQMTMLMGKSGAGKSTLLDVIA---GRKTFGTVEGTLLFNGQPR 293
>gi|217075901|gb|ACJ86310.1| unknown [Medicago truncatula]
Length = 284
Score = 40.1 bits (92), Expect = 1.3, Method: Composition-based stats.
Identities = 33/169 (19%), Positives = 58/169 (34%), Gaps = 26/169 (15%)
Query: 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGK---ANPSLIRLM 557
Q+ + + G G+GK+ L I G + IN S++M +A K A SL +
Sbjct: 119 QKGVLLYGPPGTGKTMLAKAIAKESGAVF-INVRISNLMSKWFGDAQKLVAAVFSLAHKL 177
Query: 558 GSRIVIISETNE--NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLF 615
I+ I E + ++ + A + ++ ++ +
Sbjct: 178 QPSIIFIDEVDSFLGQRRSSDHEAVLNMKTEFMALW---DGFATDQSARVMVLAATNRP- 233
Query: 616 VRNPDDAWWRRYIVIP--FDKPIANRDASFAQKLETKYTLEAKKWFLKG 662
D+A RR P F+ +R K + K LKG
Sbjct: 234 -SELDEAILRRL---PQAFEIGYPDR----------KERADILKVILKG 268
>gi|254380848|ref|ZP_04996214.1| AAA ATPase [Streptomyces sp. Mg1]
gi|194339759|gb|EDX20725.1| AAA ATPase [Streptomyces sp. Mg1]
Length = 422
Score = 40.1 bits (92), Expect = 1.3, Method: Composition-based stats.
Identities = 35/195 (17%), Positives = 52/195 (26%), Gaps = 21/195 (10%)
Query: 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS-LIRLMGSR 560
R + + G G+GKST + I G ++ A + + RL
Sbjct: 197 RAVMLFGPPGTGKSTFAHAIASRLGWPFLELFPARLAAEYGLASGLNRRFDEIARLDHV- 255
Query: 561 IVIISETNE--NDEINAAKIKQMTGGDCMTA--RLNYGNTYSESPASFTPFIVPNKHLFV 616
+V I E E A + + A R + N V
Sbjct: 256 LVFIDEVEEIAGTRSGADATAVGVVNELLKAVVRFRGQD-------GRLLVCATN---DV 305
Query: 617 RNPDDAWWRRYIVIPFD--KPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD 674
D A+ R FD PI D L Y A A S+G
Sbjct: 306 TTLDSAFLRHGR---FDYVLPIGPPDHRARTALWESYLARAGAEADSAALATASEGFTPA 362
Query: 675 IPEVCLKAKEEERQG 689
+ + +
Sbjct: 363 DIAHVARTVSQVQFE 377
>gi|294936311|ref|XP_002781709.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239892631|gb|EER13504.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 1648
Score = 40.1 bits (92), Expect = 1.4, Method: Composition-based stats.
Identities = 26/166 (15%), Positives = 45/166 (27%), Gaps = 45/166 (27%)
Query: 491 GMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF----GNQ--YVINAEASDIMQNRPP 544
G+ L + G G+GKST +N + G+ Y + R
Sbjct: 442 GLDLTMYRDE--LFVLLGHNGAGKSTTINALSGMIVPSSGDVSIYGHKVPIEMPLIRRSM 499
Query: 545 EAGKANPSL-------------IRLMG-----SRIVIISETNENDEINAAKIKQMTGGDC 586
+ L L G + +E + A++K ++GG
Sbjct: 500 GVCPQHDVLWDDLTVEEHFNLFANLRGLSRDEKALKFATEMELGHKF-GARVKTLSGG-- 556
Query: 587 MTARLNYGNTYSESPASFTPFIVPNKHLFV-----RNPDDAWWRRY 627
+ S V + L + D + RR
Sbjct: 557 -----------MKRKLSVGLAFVGDSKLVILDEPSSGMDPSARRRM 591
>gi|302540561|ref|ZP_07292903.1| putative ATPase family associated with various cellular activities
(AAA) [Streptomyces hygroscopicus ATCC 53653]
gi|302458179|gb|EFL21272.1| putative ATPase family associated with various cellular activities
(AAA) [Streptomyces himastatinicus ATCC 53653]
Length = 371
Score = 40.1 bits (92), Expect = 1.4, Method: Composition-based stats.
Identities = 20/144 (13%), Positives = 44/144 (30%), Gaps = 17/144 (11%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAE----------------ASDIMQNRPPEAG 547
+ + G G+GKS L L+ A + + + I + + E+
Sbjct: 81 LLLIGDPGTGKSWLAELLSAAISRNSTLVVQGTAGTTEDHIKYSWNVSMVIAKGQSRESM 140
Query: 548 KANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPF 607
+P + + G I E + + + ++ + + F+
Sbjct: 141 IPSPIMTAMEGGAIGRFEELTRSTSDVQDALISILSEKYISVPELDSDGIVFAKPGFSII 200
Query: 608 IVPNKHLF-VRNPDDAWWRRYIVI 630
N V + A RR+ +
Sbjct: 201 ATANSRDRGVNDLSSALKRRFNFV 224
>gi|296818593|ref|XP_002849633.1| ATPase family AAA domain-containing protein 1-B [Arthroderma otae
CBS 113480]
gi|238840086|gb|EEQ29748.1| ATPase family AAA domain-containing protein 1-B [Arthroderma otae
CBS 113480]
Length = 417
Score = 40.1 bits (92), Expect = 1.4, Method: Composition-based stats.
Identities = 37/210 (17%), Positives = 74/210 (35%), Gaps = 30/210 (14%)
Query: 439 ETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLG-- 496
+ GQ+ + ++L +T+ T ++ ++ E++++ V L
Sbjct: 76 KNGQRRQRKEKLVLTQYEQTIAMDVVAPEDIPVSFDDIGGLEDIIEELKESVIYPLTMPQ 135
Query: 497 --GNKAQRF-----IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAG-- 547
+ + + G G GK+ L + + G + IN S + + ++
Sbjct: 136 LYRTSSSLLSAPSGVLLYGPPGCGKTMLAKALAHESGACF-INLHISTLTEKWYGDSNKL 194
Query: 548 -KANPSLIRLMGSRIVIISETN-------ENDEINAAKIKQ--MTGGDCMTARLNYGNTY 597
A SL R + IV I E + + + +K MT D +T+ G
Sbjct: 195 VNAVFSLARKLEPSIVFIDEIDAVLGTRRSGEHEASGMVKAEFMTHWDGLTSANAMGQ-- 252
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRY 627
P N +++ D+A RR
Sbjct: 253 ---PQRVLLLGATN---RIQDIDEAILRRM 276
>gi|123229254|ref|XP_001286066.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121850866|gb|EAX73136.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 211
Score = 40.1 bits (92), Expect = 1.4, Method: Composition-based stats.
Identities = 37/209 (17%), Positives = 66/209 (31%), Gaps = 19/209 (9%)
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGN 595
M N GK N S+ + +++ +E D +N+ +K + Y +
Sbjct: 1 MTNLENICGKFNSSIENMK---LIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKD 57
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
+ + N D RRY+V+ +D + L T +
Sbjct: 58 QRVCENVANFVMVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDF 113
Query: 656 KKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
+ IP + E + Y+ +ID+ + SL
Sbjct: 114 YNHLFSYFMTLDISKFNPRQIPYTEERQTLLEANKS-VYELFIDETNFECLDER----SL 168
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLK 743
SY +Y ++ Y S RT N+K
Sbjct: 169 YDSYKQYCQE---YGYMAASKRTFLANVK 194
>gi|9630380|ref|NP_046813.1| nonstructural protein NS1 [Diatraea saccharalis densovirus]
gi|6136265|sp|O71153|VNCS_DSDNV RecName: Full=Non-capsid protein NS-1; AltName: Full=NCVP1;
AltName: Full=Non-structural protein NS1
gi|3170012|gb|AAC17999.1| nonstructural protein NS1 [Diatraea saccharalis densovirus]
Length = 545
Score = 40.1 bits (92), Expect = 1.4, Method: Composition-based stats.
Identities = 26/170 (15%), Positives = 54/170 (31%), Gaps = 19/170 (11%)
Query: 478 ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
+ E+++ F + L I GK+ ++I
Sbjct: 377 DDEDLIVEFLTNLVNVLDRRIPKLNAFLIISPPSGGKNFFFDMIFGLL------------ 424
Query: 538 IMQNRPPEAGKAN-PSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLN-YGN 595
+ + +A + N + R+++ +E N + IK M GGD T R+ +
Sbjct: 425 LSYGQLGQANRHNLFAFQEAPNKRVLLWNEPNYESSL-TDTIKMMFGGDPYTVRVKNRMD 483
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQ 645
+ + + N F+ A+ R I ++ +D
Sbjct: 484 AHVKRTP--VIILTNNTVPFMYEL--AFSDRIIQYKWNAAPFLKDYELKP 529
>gi|256078217|ref|XP_002575393.1| rfx5 [Schistosoma mansoni]
gi|238660631|emb|CAZ31626.1| rfx5, putative [Schistosoma mansoni]
Length = 1109
Score = 40.1 bits (92), Expect = 1.4, Method: Composition-based stats.
Identities = 12/79 (15%), Positives = 28/79 (35%), Gaps = 5/79 (6%)
Query: 696 WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755
WI + + + Y Y E + K ++T +K+ +K +
Sbjct: 118 WIMSHLEEDPSTCLRKDEVYDDYRAYCE---KHHMKTLNTADFGKVMKRA--FPNVKPRR 172
Query: 756 IEKEWKSKRIIKGLKLKPA 774
+ + +S+ G++ K
Sbjct: 173 LGQRGQSRYCYGGMRKKTE 191
>gi|94994241|ref|YP_602339.1| phage protein [Streptococcus phage 10750.2]
gi|94547749|gb|ABF37795.1| phage protein [Streptococcus phage 10750.2]
Length = 270
Score = 40.1 bits (92), Expect = 1.4, Method: Composition-based stats.
Identities = 28/197 (14%), Positives = 52/197 (26%), Gaps = 12/197 (6%)
Query: 8 EQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYA 67
+ A GF +IP+ K+P ++ + ++ + + +
Sbjct: 6 DYAIYYQQKGFSIIPISKDGKKPLVAFA-DKPAFTEHELRLIWKDNPDANIALKTDTFFV 64
Query: 68 FDIDSK-DEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHL 126
DID D ++ E P P + K +
Sbjct: 65 IDIDVHNDVDGLKNLREW-EHARLIPKTLQATTPSGGRHIYLKKPQGVSMAQNIGFIDGV 123
Query: 127 DILGCGQYFVAYNIHPKTKKEYTWTT--PPHRFKVEDTPLLSEEDVEYLFKFFQEITVPL 184
D+ +V K Y W P ++ + PL L +E+
Sbjct: 124 DLKAHVNNYVLVPPSNNAKGMYEWDMVHSPTSGEMTEAPL-------ELINVLRELRPAY 176
Query: 185 VKDKKSIIPSKTWTNNN 201
D S +N
Sbjct: 177 EYDASSFTSGDYQGSNK 193
>gi|159146230|gb|ABW90578.1| virulence-associated protein [Bacteriophage APSE-2]
Length = 378
Score = 40.1 bits (92), Expect = 1.4, Method: Composition-based stats.
Identities = 19/104 (18%), Positives = 33/104 (31%), Gaps = 10/104 (9%)
Query: 206 TNREITAFLSCFGEEFYNGSHDEWIPVV--MAVHHETRGSSKGKEIARRWSKQGSTYDEE 263
T ++ + L ++ W+ + +A +T + K + WS + D E
Sbjct: 198 TFEDLRSALWYPKILNQAENYPSWVDMGNRLAWFKDTHFEDEAKTMWLDWSSAAAKGDIE 257
Query: 264 NFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRF 307
KW + G SL G + P A R
Sbjct: 258 AAEAKWAELRADRTG-----YQAIFSLAQKAGWVNPG---AERL 293
>gi|123239629|ref|XP_001287655.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121855471|gb|EAX74725.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 211
Score = 40.1 bits (92), Expect = 1.5, Method: Composition-based stats.
Identities = 37/209 (17%), Positives = 67/209 (32%), Gaps = 19/209 (9%)
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGN 595
M N GK N S+ + +++ +E D +N+ +K + Y +
Sbjct: 1 MTNLENICGKFNSSIENMK---LIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKD 57
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
+ + N D RRY+V+ +D + L T +
Sbjct: 58 QRVCENVANFIMVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDALSECLTSDF 113
Query: 656 KKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
+ IP + E + Y+ +ID+ + + SL
Sbjct: 114 YNHLFSYFMTLDISKFNPRQIPHTEERQTLLEANKS-VYELFIDETDFVSLDER----SL 168
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLK 743
SY +Y ++ Y S RT N+K
Sbjct: 169 YDSYKQYCQE---YGYMSASKRTFLANVK 194
>gi|11418961|gb|AAC69557.2| ATP binding protein BviB [Butyrivibrio fibrisolvens]
Length = 280
Score = 40.1 bits (92), Expect = 1.5, Method: Composition-based stats.
Identities = 21/127 (16%), Positives = 38/127 (29%), Gaps = 9/127 (7%)
Query: 506 IRGVGGSGKSTLMNLIKYAFGNQYV-INAEASDIMQNRPPEAGKANPSLIRLMGSRIVII 564
+ G G+GKSTL+ LI G I I+ + + G+ + I
Sbjct: 35 LIGENGAGKSTLIKLILQLIGKDSGEILIFGDTIVSKQTKKEISVVFDTNNYNGN--LTI 92
Query: 565 SETNE------NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRN 618
+E N + + K + + A I + + +
Sbjct: 93 NELNIILNRIFGRKWDEKKYFNQVMANGLPREKKIDTFSLGMKAKLNIIIAFSHNPRILI 152
Query: 619 PDDAWWR 625
D+A
Sbjct: 153 LDEATSN 159
>gi|315039979|ref|XP_003169367.1| ATPase family AAA domain-containing protein 1-B [Arthroderma
gypseum CBS 118893]
gi|311346057|gb|EFR05260.1| ATPase family AAA domain-containing protein 1-B [Arthroderma
gypseum CBS 118893]
Length = 417
Score = 40.1 bits (92), Expect = 1.5, Method: Composition-based stats.
Identities = 37/210 (17%), Positives = 74/210 (35%), Gaps = 30/210 (14%)
Query: 439 ETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLG-- 496
+ GQ+ + ++L +T+ T ++ ++ E++++ V L
Sbjct: 76 KNGQRRQRKEKLVLTQYEQTIAMDVVAPEDIPVSFDDIGGLEDIIEELKESVIYPLTMPQ 135
Query: 497 --GNKAQRF-----IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAG-- 547
+ + + G G GK+ L + + G + IN S + + ++
Sbjct: 136 LYRTSSSLLSAPSGVLLYGPPGCGKTMLAKALAHESGACF-INLHISTLTEKWYGDSNKL 194
Query: 548 -KANPSLIRLMGSRIVIISETN-------ENDEINAAKIKQ--MTGGDCMTARLNYGNTY 597
A SL R + IV I E + + + +K MT D +T+ G
Sbjct: 195 VNAVFSLARKLEPSIVFIDEIDAVLGTRRSGEHEASGMVKAEFMTHWDGLTSANAMGQ-- 252
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRY 627
P N +++ D+A RR
Sbjct: 253 ---PQRVLLLGATN---RIQDIDEAILRRM 276
>gi|332654350|ref|ZP_08420094.1| virulence-associated E [Ruminococcaceae bacterium D16]
gi|332517436|gb|EGJ47041.1| virulence-associated E [Ruminococcaceae bacterium D16]
Length = 464
Score = 40.1 bits (92), Expect = 1.5, Method: Composition-based stats.
Identities = 40/245 (16%), Positives = 68/245 (27%), Gaps = 28/245 (11%)
Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539
E + + V G K + + + G G+GKST L+
Sbjct: 162 EALKLFLLGAVSRVFQPGCKFEIMLCLVGGQGAGKSTFFRLLA----------VRDEWFS 211
Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLN--YGNTY 597
+ +L G I+ +SE + A K + +R Y Y
Sbjct: 212 DDLRKLDDD--NVYRKLQGHWIIEMSEM-----MATANAKSIEEIKSFLSRQKEVYKIPY 264
Query: 598 SESP---ASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLE 654
P F + L D + RR+ IP + +
Sbjct: 265 ETHPADRPRQCVFGGTSNALDFLPLDRSGNRRF--IPVMVYPEQAEVHILEDEAASRAYI 322
Query: 655 AKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQG---TDTYQAWIDDCCDIGENLWEES 711
+ W + ++ Y S + + +E ++ DT I D S
Sbjct: 323 EQMWA-EAMEIYRSGRFKLAFSPTMQRYLKEHQRDFMPEDTKAGMIQAYLDKYTGSMVCS 381
Query: 712 HSLAK 716
L K
Sbjct: 382 KQLYK 386
>gi|210612448|ref|ZP_03289306.1| hypothetical protein CLONEX_01507 [Clostridium nexile DSM 1787]
gi|210151556|gb|EEA82563.1| hypothetical protein CLONEX_01507 [Clostridium nexile DSM 1787]
Length = 325
Score = 40.1 bits (92), Expect = 1.5, Method: Composition-based stats.
Identities = 39/245 (15%), Positives = 69/245 (28%), Gaps = 28/245 (11%)
Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539
E + + + A G K + + + G G+GKST L+
Sbjct: 23 EALKLFLLGAISRAFQPGCKFEIMLCLVGGQGAGKSTFFRLLA----------VRDEWFS 72
Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLN--YGNTY 597
+ +L G I+ +SE + A K + +R Y Y
Sbjct: 73 DDLRKLDDD--NVYRKLQGHWIIEMSEM-----MATANAKSIEEIKSFLSRQKEVYKIPY 125
Query: 598 SESP---ASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLE 654
P F + L D + RR+ IP + +
Sbjct: 126 ETHPADRPRQCVFGGTSNALDFLPLDRSGNRRF--IPVMVYPEQAEVHILEDEAASKAYI 183
Query: 655 AKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQG---TDTYQAWIDDCCDIGENLWEES 711
+ W + ++ Y + + + +E ++ DT I D S
Sbjct: 184 EQMWA-EAMEIYRNGRFKLAFSPTMQRYLKEHQRDFMPEDTKAGMIQAYLDKYTGSMVCS 242
Query: 712 HSLAK 716
L K
Sbjct: 243 KQLYK 247
>gi|123239155|ref|XP_001287546.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121855163|gb|EAX74616.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 194
Score = 40.1 bits (92), Expect = 1.5, Method: Composition-based stats.
Identities = 29/188 (15%), Positives = 59/188 (31%), Gaps = 16/188 (8%)
Query: 560 RIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV 616
++++ +E D +N+ +K + Y + + + N
Sbjct: 2 KLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMK 61
Query: 617 RNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-I 675
D RRY+V+ +D + L T + + I
Sbjct: 62 LESSD---RRYVVVR-TSDSHMQDTEYFDDLAEILTSDFYNHLFSYFMTLDISKFNPRQI 117
Query: 676 PEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIST 735
P + E + Y+ ++D+ + + SL Y +Y ++ Y S
Sbjct: 118 PHTEERQTLLEANKS-VYELFVDETDFVSLDEK----SLYDEYKQYCQE---YGYMAASK 169
Query: 736 RTVTLNLK 743
RT N+K
Sbjct: 170 RTFLANVK 177
>gi|270290648|ref|ZP_06196872.1| ABC transporter [Pediococcus acidilactici 7_4]
gi|270280708|gb|EFA26542.1| ABC transporter [Pediococcus acidilactici 7_4]
Length = 475
Score = 40.1 bits (92), Expect = 1.5, Method: Composition-based stats.
Identities = 17/88 (19%), Positives = 27/88 (30%), Gaps = 7/88 (7%)
Query: 484 DYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF---GNQYVINAEASDIMQ 540
Y + V + Q I + G GSGKSTL I G + N S
Sbjct: 266 RYLLQAVQTSF----PKQHLILLTGENGSGKSTLFEAIARLHPYQGKLFYENRPLSQFNA 321
Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETN 568
+ + ++ + E +
Sbjct: 322 RTWAKTATVVFQDSEMQFLKMTVTEEID 349
>gi|257066568|ref|YP_003152824.1| hypothetical protein Apre_1076 [Anaerococcus prevotii DSM 20548]
gi|256798448|gb|ACV29103.1| hypothetical protein Apre_1076 [Anaerococcus prevotii DSM 20548]
Length = 812
Score = 40.1 bits (92), Expect = 1.5, Method: Composition-based stats.
Identities = 17/75 (22%), Positives = 25/75 (33%), Gaps = 17/75 (22%)
Query: 467 QEFLDLVSGYFESEEVMDYFTRCVGMALLG----------GNKAQR-----FIHIRGVGG 511
F V Y ++ + A G +R F+ I G G
Sbjct: 379 HTFESFVHKY--DDKYGQRIMEAIFYAFTGPFLYEIKTLARTSEERNDIPQFLFIGGTAG 436
Query: 512 SGKSTLMNLIKYAFG 526
SGKS+L+ +I G
Sbjct: 437 SGKSSLIKMINKMLG 451
>gi|159146220|gb|ABW90573.1| virulence-associated protein [Bacteriophage APSE-2]
Length = 378
Score = 40.1 bits (92), Expect = 1.5, Method: Composition-based stats.
Identities = 19/104 (18%), Positives = 33/104 (31%), Gaps = 10/104 (9%)
Query: 206 TNREITAFLSCFGEEFYNGSHDEWIPVV--MAVHHETRGSSKGKEIARRWSKQGSTYDEE 263
T ++ + L ++ W+ + +A +T + K + WS + D E
Sbjct: 198 TFEDLRSALWYPKILNQAENYPSWVDMGNRLAWFKDTHFEDEAKTMWLDWSSAAAKGDIE 257
Query: 264 NFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRF 307
KW + G SL G + P A R
Sbjct: 258 AAEAKWAELRADRTG-----YQAIFSLAQKAGWVNPG---AERL 293
>gi|123159659|ref|XP_001278860.1| hypothetical protein [Trichomonas vaginalis G3]
gi|123253222|ref|XP_001289038.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121826812|gb|EAX65930.1| hypothetical protein TVAG_153960 [Trichomonas vaginalis G3]
gi|121859376|gb|EAX76108.1| hypothetical protein TVAG_324110 [Trichomonas vaginalis G3]
Length = 211
Score = 40.1 bits (92), Expect = 1.5, Method: Composition-based stats.
Identities = 36/210 (17%), Positives = 65/210 (30%), Gaps = 19/210 (9%)
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGN 595
M N GK N S+ + +++ +E D +N+ +K + Y +
Sbjct: 1 MTNLENICGKFNSSIENMK---LIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKD 57
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
+ + N D RRY+V+ +D + L T +
Sbjct: 58 QRVCENVANFIMVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDF 113
Query: 656 KKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
+ IP + E + Y+ +ID+ + SL
Sbjct: 114 YNHLFSYFMTLDISKFNPRQIPYTEERQTLLEANKS-VYELFIDETNFECLDER----SL 168
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLKQ 744
Y +Y ++ Y S RT N+K
Sbjct: 169 YDEYKQYCQE---YGYMTASKRTFLANVKN 195
>gi|300715799|ref|YP_003740602.1| ABC transporter ATP-binding protein [Erwinia billingiae Eb661]
gi|299061635|emb|CAX58750.1| ABC transporter, ATP-binding protein [Erwinia billingiae Eb661]
Length = 222
Score = 40.1 bits (92), Expect = 1.6, Method: Composition-based stats.
Identities = 15/56 (26%), Positives = 22/56 (39%), Gaps = 6/56 (10%)
Query: 474 SGYFESEEVMDYFTRCVGMALLGGNKAQR----FIHIRGVGGSGKSTLMNLIKYAF 525
+ + + Y G LL Q F+ + G GSGKSTL+ +I
Sbjct: 4 TSLLLDVQDVSYVQD--GTTLLAPVSLQLNQGEFVLLTGPSGSGKSTLLKIIASLL 57
>gi|124378240|ref|YP_001029431.1| GfV-D3-ORF1 [Glypta fumiferanae ichnovirus]
gi|124270647|dbj|BAF45568.1| GfV-D3-ORF1 [Glypta fumiferanae ichnovirus]
Length = 493
Score = 40.1 bits (92), Expect = 1.6, Method: Composition-based stats.
Identities = 23/108 (21%), Positives = 44/108 (40%), Gaps = 10/108 (9%)
Query: 193 PSKTWTNN---NNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHH-ETRGSSKGKE 248
PSK + N YT + + A + E ++ +D W V+ A++ +
Sbjct: 132 PSKKMKMDENIGNLSYTKQSLKALVMDL-ESRHSEKYDLWRNVLWALNTCGLENGYDTLD 190
Query: 249 IARRWSKQGSTYDE-ENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHG 295
IA +SK+ S Y + E+ +++ D G +++ S Y
Sbjct: 191 IANEFSKRSSKYKDFEDVKKTFESSD----GTISQQYLNEISKVYQED 234
>gi|167378436|ref|XP_001734800.1| 26S protease regulatory subunit [Entamoeba dispar SAW760]
gi|165903522|gb|EDR29030.1| 26S protease regulatory subunit, putative [Entamoeba dispar SAW760]
Length = 398
Score = 40.1 bits (92), Expect = 1.6, Method: Composition-based stats.
Identities = 28/146 (19%), Positives = 52/146 (35%), Gaps = 19/146 (13%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL---IRLMGSR 560
+ + G G+GK+ L + + + I ++++Q E + L R
Sbjct: 178 VLLYGPPGTGKTLLARAVAH-HTDCTFIRVSGTELVQKYIGEGSRMVRELFVMAREHAPS 236
Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYG-----NTYSESPASFTPFIVPNKHLF 615
I+ + E D I +++I+ +GGD R + + E + + N
Sbjct: 237 IIFMDEI---DSIGSSRIEGKSGGDSEVQRTMLELVNQLDGF-EPTKNIKVLMATN---R 289
Query: 616 VRNPDDAWWR--RY-IVIPFDKPIAN 638
+ D A R R I F P
Sbjct: 290 IDILDPALLRPGRIDRKIEFPNPKEE 315
>gi|167378685|ref|XP_001734886.1| 26S protease regulatory subunit [Entamoeba dispar SAW760]
gi|165903356|gb|EDR28931.1| 26S protease regulatory subunit, putative [Entamoeba dispar SAW760]
Length = 376
Score = 40.1 bits (92), Expect = 1.6, Method: Composition-based stats.
Identities = 28/146 (19%), Positives = 52/146 (35%), Gaps = 19/146 (13%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL---IRLMGSR 560
+ + G G+GK+ L + + + I ++++Q E + L R
Sbjct: 156 VLLYGPPGTGKTLLARAVAH-HTDCTFIRVSGTELVQKYIGEGSRMVRELFVMAREHAPS 214
Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYG-----NTYSESPASFTPFIVPNKHLF 615
I+ + E D I +++I+ +GGD R + + E + + N
Sbjct: 215 IIFMDEI---DSIGSSRIEGKSGGDSEVQRTMLELVNQLDGF-EPTKNIKVLMATN---R 267
Query: 616 VRNPDDAWWR--RY-IVIPFDKPIAN 638
+ D A R R I F P
Sbjct: 268 IDILDPALLRPGRIDRKIEFPNPKEE 293
>gi|67465840|ref|XP_649078.1| 26S protease regulatory subunit [Entamoeba histolytica HM-1:IMSS]
gi|56465447|gb|EAL43703.1| 26S protease regulatory subunit, putative [Entamoeba histolytica
HM-1:IMSS]
Length = 398
Score = 40.1 bits (92), Expect = 1.6, Method: Composition-based stats.
Identities = 28/146 (19%), Positives = 52/146 (35%), Gaps = 19/146 (13%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL---IRLMGSR 560
+ + G G+GK+ L + + + I ++++Q E + L R
Sbjct: 178 VLLYGPPGTGKTLLARAVAH-HTDCTFIRVSGTELVQKYIGEGSRMVRELFVMAREHAPS 236
Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYG-----NTYSESPASFTPFIVPNKHLF 615
I+ + E D I +++I+ +GGD R + + E + + N
Sbjct: 237 IIFMDEI---DSIGSSRIEGKSGGDSEVQRTMLELVNQLDGF-EPTKNIKVLMATN---R 289
Query: 616 VRNPDDAWWR--RY-IVIPFDKPIAN 638
+ D A R R I F P
Sbjct: 290 IDILDPALLRPGRIDRKIEFPNPKEE 315
>gi|123476492|ref|XP_001321418.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121904244|gb|EAY09195.1| hypothetical protein TVAG_308840 [Trichomonas vaginalis G3]
Length = 211
Score = 40.1 bits (92), Expect = 1.6, Method: Composition-based stats.
Identities = 36/209 (17%), Positives = 64/209 (30%), Gaps = 19/209 (9%)
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGN 595
M N GK N S+ + +++ +E D +N+ +K + Y +
Sbjct: 1 MTNLENICGKFNSSIENMK---LIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKD 57
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
+ + N D RRY+V+ +D + L T
Sbjct: 58 QRVCENVANFIMVSNNTVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTPNF 113
Query: 656 KKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
+ IP + E + Y+ +ID+ + SL
Sbjct: 114 YNHLFSYFMTLDISKFNPRQIPYTEERQTLLEANKS-VYELFIDETNFECLDER----SL 168
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLK 743
Y +Y ++ Y S RT N+K
Sbjct: 169 YDEYKQYCQE---YGYMAASKRTFLANVK 194
>gi|123194362|ref|XP_001283044.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121841640|gb|EAX70114.1| hypothetical protein TVAG_106280 [Trichomonas vaginalis G3]
Length = 211
Score = 40.1 bits (92), Expect = 1.6, Method: Composition-based stats.
Identities = 36/210 (17%), Positives = 65/210 (30%), Gaps = 19/210 (9%)
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGN 595
M N GK N S+ + +++ +E D +N+ +K + Y +
Sbjct: 1 MTNLENICGKFNSSIENMK---LIVCNELQSIDTTKGLNSDALKSLITDKVGVVERKYKD 57
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
+ + N D RRY+V+ +D + L T +
Sbjct: 58 QRVCENVANFIMVSNNTVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDF 113
Query: 656 KKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
+ IP + E + Y+ +ID+ + SL
Sbjct: 114 YNHLFSYFMTLDISKFNPRQIPYTEERQTLLEANKS-VYELFIDETNFECLDER----SL 168
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLKQ 744
Y +Y ++ Y S RT N+K
Sbjct: 169 YDEYKQYCQE---YGYMTASKRTFLANVKN 195
>gi|85716894|ref|ZP_01047859.1| ABC transporter-related protein [Nitrobacter sp. Nb-311A]
gi|85696274|gb|EAQ34167.1| ABC transporter-related protein [Nitrobacter sp. Nb-311A]
Length = 249
Score = 40.1 bits (92), Expect = 1.6, Method: Composition-based stats.
Identities = 30/136 (22%), Positives = 50/136 (36%), Gaps = 22/136 (16%)
Query: 470 LDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRF----IHIRGVGGSGKSTLMNLIKYAF 525
LD +S +F E R + F + + G GSGK+TL+N+I
Sbjct: 28 LDGISKHFGEGETRVDALR--------DVSLEVFPRQVVALLGPSGSGKTTLLNIIGCIL 79
Query: 526 -GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI-----NAAKIK 579
+ + + ++ + L RL +I I + + N A +
Sbjct: 80 DPSAGAMELDGELVLHEGQWQ----RSDLRRLRLEKIGFIFQFHNLLPFLDATDNVAVVL 135
Query: 580 QMTGGDCMTARLNYGN 595
Q+ G D TAR G+
Sbjct: 136 QLAGADSGTARRRAGD 151
>gi|297796103|ref|XP_002865936.1| ATP binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297311771|gb|EFH42195.1| ATP binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 830
Score = 40.1 bits (92), Expect = 1.6, Method: Composition-based stats.
Identities = 26/139 (18%), Positives = 46/139 (33%), Gaps = 17/139 (12%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAG---KANPSLIRLMGSR 560
I + G G+GK+ L I G + IN S I E +A +L +
Sbjct: 554 ILLFGPPGTGKTMLAKAIANEAGASF-INVSMSTITSKWFGEDEKNVRALFTLAAKVSPT 612
Query: 561 IVIISETNE--NDEINAAKIKQMTGGDCMTARLN-YGNTYSESPASFTPFIVPNKHLFVR 617
I+ + E + + + M + + + P + F
Sbjct: 613 IIFVDEVDSMLGQRTRVGEHEAM---RKIKNEFMTHWDGLMTKPGERILVLAATNRPF-- 667
Query: 618 NPDDAWWRRYIVIPFDKPI 636
+ D+A RR F++ I
Sbjct: 668 DLDEAIIRR-----FERRI 681
>gi|222423365|dbj|BAH19655.1| AT5G52882 [Arabidopsis thaliana]
Length = 829
Score = 40.1 bits (92), Expect = 1.6, Method: Composition-based stats.
Identities = 26/139 (18%), Positives = 46/139 (33%), Gaps = 17/139 (12%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAG---KANPSLIRLMGSR 560
I + G G+GK+ L I G + IN S I E +A +L +
Sbjct: 554 ILLFGPPGTGKTMLAKAIANEAGASF-INVSMSTITSKWFGEDEKNVRALFTLAAKVSPT 612
Query: 561 IVIISETNE--NDEINAAKIKQMTGGDCMTARLN-YGNTYSESPASFTPFIVPNKHLFVR 617
I+ + E + + + M + + + P + F
Sbjct: 613 IIFVDEVDSMLGQRTRVGEHEAM---RKIKNEFMTHWDGLMTKPGERILVLAATNRPF-- 667
Query: 618 NPDDAWWRRYIVIPFDKPI 636
+ D+A RR F++ I
Sbjct: 668 DLDEAIIRR-----FERRI 681
>gi|145334803|ref|NP_001078747.1| ATP binding / nucleoside-triphosphatase/ nucleotide binding
[Arabidopsis thaliana]
gi|332008889|gb|AED96272.1| putative ATP binding protein [Arabidopsis thaliana]
Length = 829
Score = 40.1 bits (92), Expect = 1.6, Method: Composition-based stats.
Identities = 26/139 (18%), Positives = 46/139 (33%), Gaps = 17/139 (12%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAG---KANPSLIRLMGSR 560
I + G G+GK+ L I G + IN S I E +A +L +
Sbjct: 554 ILLFGPPGTGKTMLAKAIANEAGASF-INVSMSTITSKWFGEDEKNVRALFTLAAKVSPT 612
Query: 561 IVIISETNE--NDEINAAKIKQMTGGDCMTARLN-YGNTYSESPASFTPFIVPNKHLFVR 617
I+ + E + + + M + + + P + F
Sbjct: 613 IIFVDEVDSMLGQRTRVGEHEAM---RKIKNEFMTHWDGLMTKPGERILVLAATNRPF-- 667
Query: 618 NPDDAWWRRYIVIPFDKPI 636
+ D+A RR F++ I
Sbjct: 668 DLDEAIIRR-----FERRI 681
>gi|110741581|dbj|BAE98739.1| hypothetical protein [Arabidopsis thaliana]
Length = 751
Score = 40.1 bits (92), Expect = 1.6, Method: Composition-based stats.
Identities = 26/139 (18%), Positives = 46/139 (33%), Gaps = 17/139 (12%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAG---KANPSLIRLMGSR 560
I + G G+GK+ L I G + IN S I E +A +L +
Sbjct: 554 ILLFGPPGTGKTMLAKAIANEAGASF-INVSMSTITSKWFGEDEKNVRALFTLAAKVSPT 612
Query: 561 IVIISETNE--NDEINAAKIKQMTGGDCMTARLN-YGNTYSESPASFTPFIVPNKHLFVR 617
I+ + E + + + M + + + P + F
Sbjct: 613 IIFVDEVDSMLGQRTRVGEHEAM---RKIKNEFMTHWDGLMTKPGERILVLAATNRPF-- 667
Query: 618 NPDDAWWRRYIVIPFDKPI 636
+ D+A RR F++ I
Sbjct: 668 DLDEAIIRR-----FERRI 681
>gi|257438317|ref|ZP_05614072.1| putative pyocin R2_PP, TraC domain protein [Faecalibacterium
prausnitzii A2-165]
gi|257199233|gb|EEU97517.1| putative pyocin R2_PP, TraC domain protein [Faecalibacterium
prausnitzii A2-165]
Length = 350
Score = 40.1 bits (92), Expect = 1.7, Method: Composition-based stats.
Identities = 40/245 (16%), Positives = 69/245 (28%), Gaps = 28/245 (11%)
Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539
E + + + A G K + + + G G+GKST L+
Sbjct: 48 EALKLFLLGAISRAFQPGCKFEIMLCLVGGQGAGKSTFFRLLA----------VRDEWFS 97
Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLN--YGNTY 597
+ +L G I+ +SE + A K + +R Y Y
Sbjct: 98 DDLRKLDDD--NVYRKLQGHWIIEMSEM-----MATANAKSIEEIKSFLSRQKEVYKIPY 150
Query: 598 SESP---ASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLE 654
P F + L D + RR+ IP + +
Sbjct: 151 ETHPADRPRQCVFGGTSNALDFLPLDRSGNRRF--IPVMVYPEQAEVHILEDEAASRAYI 208
Query: 655 AKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQG---TDTYQAWIDDCCDIGENLWEES 711
+ W + ++ Y S + + +E ++ DT I D S
Sbjct: 209 EQMWA-EAMEIYRSGRFKLAFSPDMQRYLKEHQRDFMPEDTKAGMIQAYLDRYTGSMVCS 267
Query: 712 HSLAK 716
L K
Sbjct: 268 KQLYK 272
>gi|255545124|ref|XP_002513623.1| ATP binding protein, putative [Ricinus communis]
gi|223547531|gb|EEF49026.1| ATP binding protein, putative [Ricinus communis]
Length = 835
Score = 40.1 bits (92), Expect = 1.7, Method: Composition-based stats.
Identities = 33/159 (20%), Positives = 55/159 (34%), Gaps = 22/159 (13%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGS---R 560
I + G G+GK+ L I G + IN S I E K +L L
Sbjct: 560 ILLFGPPGTGKTMLAKAIANEAGASF-INVSMSTITSKWFGEDEKNVRALFSLAAKVSPT 618
Query: 561 IVIISETN----ENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV 616
I+ + E + + I + + + MT + + P + F
Sbjct: 619 IIFVDEVDSMLGQRTRIGEHEAMRKIKNEFMT----HWDGLLTKPGERILVLAATNRPF- 673
Query: 617 RNPDDA----WWRRYIV-IPFDKPIANRDASFAQKLETK 650
+ D+A + RR +V +P I NR+ L +
Sbjct: 674 -DLDEAIIRRFERRIMVGLP---SIENREMILKTLLAKE 708
>gi|224125622|ref|XP_002329677.1| predicted protein [Populus trichocarpa]
gi|222870585|gb|EEF07716.1| predicted protein [Populus trichocarpa]
Length = 793
Score = 40.1 bits (92), Expect = 1.7, Method: Composition-based stats.
Identities = 26/139 (18%), Positives = 46/139 (33%), Gaps = 17/139 (12%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAG---KANPSLIRLMGSR 560
I + G G+GK+ L I G + IN S I E +A +L +
Sbjct: 518 ILLFGPPGTGKTMLAKAIAKEAGASF-INVSMSTITSKWFGEDEKNVRALFTLAAKVSPT 576
Query: 561 IVIISETNE--NDEINAAKIKQMTGGDCMTARLN-YGNTYSESPASFTPFIVPNKHLFVR 617
I+ + E + + + M + + + P + F
Sbjct: 577 IIFVDEVDSMLGQRTRVGEHEAM---RKIKNEFMTHWDGLLTKPGERILVLAATNRPF-- 631
Query: 618 NPDDAWWRRYIVIPFDKPI 636
+ D+A RR F++ I
Sbjct: 632 DLDEAIIRR-----FERRI 645
>gi|327298125|ref|XP_003233756.1| ATPase family AAA domain-containing protein [Trichophyton rubrum
CBS 118892]
gi|326463934|gb|EGD89387.1| ATPase family AAA domain-containing protein [Trichophyton rubrum
CBS 118892]
Length = 416
Score = 40.1 bits (92), Expect = 1.7, Method: Composition-based stats.
Identities = 36/210 (17%), Positives = 74/210 (35%), Gaps = 30/210 (14%)
Query: 439 ETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLG-- 496
+ G++ + ++L +T+ T ++ ++ +E+++ V L
Sbjct: 76 KNGKRRQRKEKLVLTQYEQTIAMDVVAPEDIPVSFDDIGGLDEIIEELKESVIYPLTMPQ 135
Query: 497 --GNKAQRF-----IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAG-- 547
+ + + G G GK+ L + + G + IN S + + ++
Sbjct: 136 LYRTTSSLLSAPSGVLLYGPPGCGKTMLAKALAHESGACF-INLHISTLTEKWYGDSNKL 194
Query: 548 -KANPSLIRLMGSRIVIISETN-------ENDEINAAKIKQ--MTGGDCMTARLNYGNTY 597
A SL R + IV I E + + + +K MT D +T+ G
Sbjct: 195 VNAVFSLARKLEPSIVFIDEIDAVLGTRRSGEHEASGMVKAEFMTHWDGLTSANAMGQ-- 252
Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRY 627
P N +++ D+A RR
Sbjct: 253 ---PQRVLILGATN---RIQDIDEAILRRM 276
>gi|123385921|ref|XP_001299188.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121879974|gb|EAX86258.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 194
Score = 40.1 bits (92), Expect = 1.7, Method: Composition-based stats.
Identities = 29/188 (15%), Positives = 61/188 (32%), Gaps = 16/188 (8%)
Query: 560 RIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV 616
++++ +E D +N+ +K + Y ++ + + N
Sbjct: 2 KLIVCNELQSIDTTKVLNSDALKSLIIDKVGVVERKYKDSRVCENVANFIMVSNNAVPMK 61
Query: 617 RNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-I 675
D RRY+V+ +D + L T + + + I
Sbjct: 62 LESSD---RRYVVVR-TSDSHMQDTEYFDALSECLTSDFYNYLFSYFMTLDISKFNPRQI 117
Query: 676 PEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIST 735
P + E + Y+ ++D+ + + SL Y +Y ++ Y S
Sbjct: 118 PHTEERQTLLEANKS-VYELFVDETDFVSLDER----SLYDEYKQYCQE---YGYMPASK 169
Query: 736 RTVTLNLK 743
RT N+K
Sbjct: 170 RTFLANVK 177
>gi|161019517|gb|ABX56085.1| E1 [Macaca fascicularis papillomavirus type 4]
Length = 635
Score = 40.1 bits (92), Expect = 1.7, Method: Composition-based stats.
Identities = 27/195 (13%), Positives = 65/195 (33%), Gaps = 26/195 (13%)
Query: 461 VEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNL 520
+G + + + ++ E + + + L G + I + G +GKS
Sbjct: 420 EDGGDWRPIVQFLR--YQGIEFITFLSAL--KCFLKGIPKKNCIVLYGPPNTGKSYF--- 472
Query: 521 IKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN-DEINAAKIK 579
G ++ + S I ++ L L +++ ++ + + ++
Sbjct: 473 -----GMSFMKFLQGSII----SYVNSNSHFWLQPLSDAKVAMLDDATPHCWTYIDNYMR 523
Query: 580 QMTGGDCMTARLNYGNTYSES-PASFTPFIVPNKHLFVRNPDDAWW--RRYIVIPFDKPI 636
G+ ++ + N P I N + D + R +V F +P
Sbjct: 524 NALDGNPISIDRKHKNLIQMKCPP---LLITSNTN--AGTDDRWLYLHSRLVVFTFQQPF 578
Query: 637 A-NRDASFAQKLETK 650
+R+ + +L K
Sbjct: 579 PLDRNGNPVYELNDK 593
>gi|123376374|ref|XP_001297952.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121878332|gb|EAX85022.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 211
Score = 40.1 bits (92), Expect = 1.7, Method: Composition-based stats.
Identities = 34/210 (16%), Positives = 64/210 (30%), Gaps = 19/210 (9%)
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGN 595
M N GK N S+ + +++ +E D +N+ +K + Y +
Sbjct: 1 MTNLENICGKFNSSIENMK---LIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKD 57
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
+ + N D RRY+V+ +D + L T +
Sbjct: 58 QRVCENVANFIMVSNNTVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDF 113
Query: 656 KKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
+ IP + E + Y+ +I++ + +
Sbjct: 114 YNHLFSYFMTLDISKFNPRQIPHTEERQTLLEANKS-VYELFIEETDFVSLDEK------ 166
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLKQ 744
Y EY++ Y S RT N+K
Sbjct: 167 -SLYDEYKQYCQEYGYMAASKRTFLANVKN 195
>gi|85057467|ref|YP_456383.1| ATP-dependent Zn protease [Aster yellows witches'-broom phytoplasma
AYWB]
gi|84789572|gb|ABC65304.1| ATP-dependent Zn protease [Aster yellows witches'-broom phytoplasma
AYWB]
Length = 702
Score = 40.1 bits (92), Expect = 1.7, Method: Composition-based stats.
Identities = 27/154 (17%), Positives = 49/154 (31%), Gaps = 14/154 (9%)
Query: 480 EEVMDYFTRCVGMALLGGNKAQRFI---HIRGVGGSGKSTLMNLIKYAFGNQYVINAEAS 536
E++++YF G ++ N + + G G+GKS L+ + G Y I E S
Sbjct: 283 EDLIEYFQDN-GSDMV--NFDKLIPRGYLLYGPPGTGKSFLIKALCNELGIHY-IELEPS 338
Query: 537 DIMQNRPPEAGKANPSL---IRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593
+ E + + I+ I E + T + + L
Sbjct: 339 RFDKTYVGEGNEELEKIWQEAESHEKTIIFIDEIS-GLANREDNQSNKTSINIVNNLLTK 397
Query: 594 GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627
+ + S N + D A R+
Sbjct: 398 LDGFKRSDKKIVLMGATNHLDKI---DSALRSRF 428
>gi|61651714|ref|NP_001013296.1| DNA-binding protein RFX2 [Danio rerio]
gi|82178869|sp|Q5EAP5|RFX2_DANRE RecName: Full=DNA-binding protein RFX2; AltName: Full=Regulatory
factor X 2
gi|59861814|gb|AAH90314.1| Regulatory factor X, 2 (influences HLA class II expression) [Danio
rerio]
Length = 734
Score = 40.1 bits (92), Expect = 1.7, Method: Composition-based stats.
Identities = 13/80 (16%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
W+ D + E + SL Y + +++ ++ + + + G++
Sbjct: 206 QWLLDNYETAEGVSLPRSSLYNHYLRHCQEQ---KLDPVNAASFGKLI--RSVFMGLRTR 260
Query: 755 KIEKEWKSKRIIKGLKLKPA 774
++ SK G++LKP
Sbjct: 261 RLGTRGNSKYHYYGIRLKPD 280
>gi|54290174|dbj|BAD61062.1| putative p60 katanin [Oryza sativa Japonica Group]
gi|222617709|gb|EEE53841.1| hypothetical protein OsJ_00317 [Oryza sativa Japonica Group]
Length = 478
Score = 39.7 bits (91), Expect = 1.7, Method: Composition-based stats.
Identities = 33/168 (19%), Positives = 51/168 (30%), Gaps = 38/168 (22%)
Query: 494 LLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGK--AN- 550
G + + G G+GKS L + + + +SD++ E+ K AN
Sbjct: 135 FTGKRSPWKAFLLYGPPGTGKSYLAEAVATEV-DSTFFSISSSDLVSKWMGESEKLVANL 193
Query: 551 PSLIR--------------LMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNT 596
+ R L G R +E + I + QM G D +
Sbjct: 194 FQMARENAPSIIFIDEIDSLCGQR-GECNENEASRRIKTELLVQMQGFDNSNDK------ 246
Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWRRY---IVIPFDKPIANRDA 641
+ V D A RR+ I IP A +D
Sbjct: 247 --------VLVLAATNMPHV--LDQAMRRRFDKCIYIPLPDLKARKDT 284
>gi|319896971|ref|YP_004135166.1| hypothetical protein HIBPF06680 [Haemophilus influenzae F3031]
gi|317432475|emb|CBY80832.1| conserved hypothetical protein [Haemophilus influenzae F3031]
Length = 730
Score = 39.7 bits (91), Expect = 1.8, Method: Composition-based stats.
Identities = 38/256 (14%), Positives = 80/256 (31%), Gaps = 45/256 (17%)
Query: 306 RFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKED 365
R D Y+ + I + + T+ + ++ LDK T +M+ + +
Sbjct: 138 RNGDTYHGEIKPICESIRDNHQPYTEKRKENGIEGLFRVVPKLDKDTGEMMDKCEWLADC 197
Query: 366 VFDLSEEPEDNN-------------------------KNSKSPRFWFNTDYRRQNVEENS 400
V + D++ + R N +
Sbjct: 198 VDVVGIGLSDSDYFSMLSFQAQGKSEPILIALPWADIGERAGWQLLKQNGLRITNSQRLK 257
Query: 401 -KAKSTAQSLEAGSIFSITSD---LLDSSSRFLGEQDGILDLETGQ-KVKPTKELYI--T 453
Q + I+ I ++ D ++ L +G+ KP + +Y
Sbjct: 258 PHLADFLQDTQNKPIYQIVNETGWQSDFNAYVLP---------SGEVLGKPERPIYFNSK 308
Query: 454 KSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMA--LLGGNKAQRF-IHIRGVG 510
+T + E+ + Y M ++ L+G A+ F +H+ G
Sbjct: 309 STTSAGYQAKGTLSEWQREIGQYLRGNHSM-MLGVACSLSAPLIGLIGAESFGVHLFGKS 367
Query: 511 GSGKSTLMNLIKYAFG 526
+GK+T+ N+ +G
Sbjct: 368 SAGKTTIANIASSIYG 383
>gi|312873799|ref|ZP_07733843.1| bifunctional DNA primase/polymerase, N-terminal domain protein
[Lactobacillus iners LEAF 2052A-d]
gi|311090680|gb|EFQ49080.1| bifunctional DNA primase/polymerase, N-terminal domain protein
[Lactobacillus iners LEAF 2052A-d]
Length = 264
Score = 39.7 bits (91), Expect = 1.8, Method: Composition-based stats.
Identities = 25/181 (13%), Positives = 48/181 (26%), Gaps = 24/181 (13%)
Query: 4 MQWKEQAKQAIHNGFKLIPLRLGDKRP-QRLGKWEEQLLSSEKID----KLPACGFGFVC 58
+ A GF +IP+ KRP + L+ E+I K P
Sbjct: 3 INLMNFAIAYAKKGFSVIPISPESKRPLIKFANL--PPLTVEEITALWCKYPTANIAL-- 58
Query: 59 GVGEQPLYAFDIDSKDEKTANTFKDT-FEILHGTPIVRIGQKPKILIPFRMNKEGIKKKK 117
DID + + K + + + F K K
Sbjct: 59 --KTDKFIVLDIDRHEIDGFESIKALHRPDWFLNTLSE--KTAHNGLHFFYRKPKNMKMT 114
Query: 118 TTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFF 177
+D+ +V Y W + P+ ++ + + ++
Sbjct: 115 QVIGILPGVDLKANKNNYVVVAPSVFGYGYYKW--------LNHLPM--KDVPKDMLEWI 164
Query: 178 Q 178
+
Sbjct: 165 K 165
>gi|227833218|ref|YP_002834925.1| recombination factor protein [Corynebacterium aurimucosum ATCC
700975]
gi|262184204|ref|ZP_06043625.1| recombination factor protein RarA [Corynebacterium aurimucosum ATCC
700975]
gi|227454234|gb|ACP32987.1| recombination factor protein [Corynebacterium aurimucosum ATCC
700975]
Length = 451
Score = 39.7 bits (91), Expect = 1.8, Method: Composition-based stats.
Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSR 560
+ + + G G+GK+TL +LI + G+ ++ + ++ A LI G R
Sbjct: 65 EASVILYGPPGTGKTTLASLIASSLGDNFIGLSALDSGVKQVREVITHARRELIE--GRR 122
Query: 561 IVIISE 566
V+ +
Sbjct: 123 TVLFID 128
>gi|183986731|ref|NP_001116955.1| DNA-binding protein RFX2 [Xenopus (Silurana) tropicalis]
gi|254797632|sp|B1WAV2|RFX2_XENTR RecName: Full=DNA-binding protein RFX2; AltName: Full=Regulatory
factor X 2
gi|171846772|gb|AAI61512.1| rfx2 protein [Xenopus (Silurana) tropicalis]
Length = 694
Score = 39.7 bits (91), Expect = 1.8, Method: Composition-based stats.
Identities = 13/80 (16%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
W+ D + E + SL Y + + ++ ++ + + + G++
Sbjct: 176 QWLLDNYETAEGVSLPRSSLYNHYLRHCQ---DHKLDPVNAASFGKLI--RSVFMGLRTR 230
Query: 755 KIEKEWKSKRIIKGLKLKPA 774
++ SK G++LKP
Sbjct: 231 RLGTRGNSKYHYYGIRLKPD 250
>gi|148222802|ref|NP_001090132.1| DNA-binding protein RFX2 [Xenopus laevis]
gi|123916375|sp|Q32NR3|RFX2_XENLA RecName: Full=DNA-binding protein RFX2; AltName: Full=Regulatory
factor X 2
gi|80479255|gb|AAI08518.1| MGC130921 protein [Xenopus laevis]
Length = 694
Score = 39.7 bits (91), Expect = 1.8, Method: Composition-based stats.
Identities = 13/80 (16%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
W+ D + E + SL Y + + ++ ++ + + + G++
Sbjct: 176 QWLLDNYETAEGVSLPRSSLYNHYLRHCQ---DHKLDPVNAASFGKLI--RSVFMGLRTR 230
Query: 755 KIEKEWKSKRIIKGLKLKPA 774
++ SK G++LKP
Sbjct: 231 RLGTRGNSKYHYYGIRLKPD 250
>gi|254555371|ref|YP_003061788.1| ABC transporter, ATP-binding protein [Lactobacillus plantarum JDM1]
gi|254044298|gb|ACT61091.1| ABC transporter, ATP-binding protein [Lactobacillus plantarum JDM1]
Length = 468
Score = 39.7 bits (91), Expect = 1.9, Method: Composition-based stats.
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 3/52 (5%)
Query: 501 QRFIHIRGVGGSGKSTLMNLIKYAF---GNQYVINAEASDIMQNRPPEAGKA 549
Q FI + G G+GKSTL+ LI + I + + + + +
Sbjct: 31 QSFILLTGPSGTGKSTLLKLIAGLLPLTPDYGTITFDGQSLTTSTANQRAQH 82
>gi|123241663|ref|XP_001288069.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121856640|gb|EAX75139.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 211
Score = 39.7 bits (91), Expect = 1.9, Method: Composition-based stats.
Identities = 35/210 (16%), Positives = 64/210 (30%), Gaps = 19/210 (9%)
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGN 595
M N GK N S+ + +++ +E D +N+ +K + Y +
Sbjct: 1 MTNLENICGKFNSSIENMK---LIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKD 57
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
+ + N D RRY+V+ +D + L T +
Sbjct: 58 QRVCENVANFIMVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDF 113
Query: 656 KKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
+ IP + E + Y+ +ID+ + +
Sbjct: 114 YNHLFSYFMTLDISKFNPRQIPYTEERQTLLEANKS-VYELFIDETDFVSLDER------ 166
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLKQ 744
Y EY++ Y S RT N+K
Sbjct: 167 -SLYDEYKQYCQEYGYMTASKRTFLANVKN 195
>gi|329723890|gb|EGG60417.1| Virulence-associated protein E [Staphylococcus epidermidis VCU144]
Length = 495
Score = 39.7 bits (91), Expect = 1.9, Method: Composition-based stats.
Identities = 35/162 (21%), Positives = 54/162 (33%), Gaps = 18/162 (11%)
Query: 496 GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIR 555
G K I + G G GKST + G+ Y N+ + K + S +
Sbjct: 176 PGIKYDSMIILYGGQGDGKST---TVSKLGGHWY-----------NQSLKTFKGDESYKK 221
Query: 556 LMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLF 615
+ GS + I E + IK R +YG P N + F
Sbjct: 222 IQGSWLCEIEELAAFQKSTIEDIKSFISAIVDIYRASYGKRIERHPRQCVFIGTTNNYEF 281
Query: 616 VRNPDDAWWRRYIVIPFDKPIANRDA--SFAQKLETKYTLEA 655
+++ RR+ I DK A + Q + + EA
Sbjct: 282 LKDQTGN--RRFFPITTDKNKATKSPFDDLTQDIVQQMFAEA 321
>gi|227113575|ref|ZP_03827231.1| ATPase central domain-containing protein [Pectobacterium
carotovorum subsp. brasiliensis PBR1692]
Length = 328
Score = 39.7 bits (91), Expect = 1.9, Method: Composition-based stats.
Identities = 28/158 (17%), Positives = 55/158 (34%), Gaps = 10/158 (6%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVI 563
+ G G+GK+ ++I + I + A K + +R V
Sbjct: 127 LLFTGPPGTGKTMSASVIATELKLPLYTVVLDNLITRYMGETAAKLRLIFDHIRQTRAVY 186
Query: 564 ISETNENDEINAAKIKQMTGGDCMTARLNYGNT--YSESPASFTPFIVPNKHLFVRNPDD 621
DE +A ++ D R + + E S + + H + D
Sbjct: 187 F-----FDEFDAIGTQRGAQNDVGEIRRVLNSFLLFVEQDDSESIVLAATNHPEL--LDR 239
Query: 622 AWWRRYI-VIPFDKPIANRDASFAQKLETKYTLEAKKW 658
A +RR+ +IPF +P + + ++ + L + W
Sbjct: 240 ALYRRFDDIIPFIRPEGDLIRNLIEQRLAVFDLCSLFW 277
>gi|138374781|gb|ABO76812.1| putative replication protein E1 [Human papillomavirus type 56]
Length = 636
Score = 39.7 bits (91), Expect = 1.9, Method: Composition-based stats.
Identities = 24/180 (13%), Positives = 59/180 (32%), Gaps = 23/180 (12%)
Query: 461 VEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTL-MN 519
EG + + + ++ + + + + L G + + G +GKS M+
Sbjct: 421 DEGGDWKPIVQFLR--YQGVDFISFL-SYFKLFLQG-TPKHNCLVLCGPPNTGKSCFAMS 476
Query: 520 LIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN-DEINAAKI 578
LIK+ G+ +++ L L +++ ++ + E + +
Sbjct: 477 LIKFFQGSVIS-------------FVNSQSHFWLQPLDNAKLGLLDDATEICWKYIDDYL 523
Query: 579 KQMTGGDCMTARLNYGNTYSES-PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637
+ + G+ ++ + P I N + + R +V F P
Sbjct: 524 RNLVDGNPISLDRKHKQLVQIKCPP---LLITTNINPMLDAKLRYLHSRMLVFQFQNPFP 580
>gi|138374749|gb|ABO76798.1| putative replication protein E1 [Human papillomavirus type 56]
Length = 636
Score = 39.7 bits (91), Expect = 1.9, Method: Composition-based stats.
Identities = 24/180 (13%), Positives = 59/180 (32%), Gaps = 23/180 (12%)
Query: 461 VEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTL-MN 519
EG + + + ++ + + + + L G + + G +GKS M+
Sbjct: 421 DEGGDWKPIVQFLR--YQGVDFISFL-SYFKLFLQG-TPKHNCLVLCGPPNTGKSCFAMS 476
Query: 520 LIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN-DEINAAKI 578
LIK+ G+ +++ L L +++ ++ + E + +
Sbjct: 477 LIKFFQGSVIS-------------FVNSQSHFWLQPLDNAKLGLLDDATEICWKYIDDYL 523
Query: 579 KQMTGGDCMTARLNYGNTYSES-PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637
+ + G+ ++ + P I N + + R +V F P
Sbjct: 524 RNLVDGNPISLDRKHKQLVQIKCPP---LLITTNINPMLDAKLRYLHSRMLVFQFQNPFP 580
>gi|138374734|gb|ABO76791.1| putative replication protein E1 [Human papillomavirus type 56]
Length = 636
Score = 39.7 bits (91), Expect = 1.9, Method: Composition-based stats.
Identities = 24/180 (13%), Positives = 59/180 (32%), Gaps = 23/180 (12%)
Query: 461 VEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTL-MN 519
EG + + + ++ + + + + L G + + G +GKS M+
Sbjct: 421 DEGGDWKPIVQFLR--YQGVDFISFL-SYFKLFLQG-TPKHNCLVLCGPPNTGKSCFAMS 476
Query: 520 LIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN-DEINAAKI 578
LIK+ G+ +++ L L +++ ++ + E + +
Sbjct: 477 LIKFFQGSVIS-------------FVNSQSHFWLQPLDNAKLGLLDDATEICWKYIDDYL 523
Query: 579 KQMTGGDCMTARLNYGNTYSES-PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637
+ + G+ ++ + P I N + + R +V F P
Sbjct: 524 RNLVDGNPISLDRKHKQLVQIKCPP---LLITTNINPMLDAKLRYLHSRMLVFQFQNPFP 580
>gi|138374763|gb|ABO76805.1| putative replication protein E1 [Human papillomavirus type 56]
Length = 636
Score = 39.7 bits (91), Expect = 1.9, Method: Composition-based stats.
Identities = 24/180 (13%), Positives = 59/180 (32%), Gaps = 23/180 (12%)
Query: 461 VEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTL-MN 519
EG + + + ++ + + + + L G + + G +GKS M+
Sbjct: 421 DEGGDWKPIVQFLR--YQGVDFISFL-SYFKLFLQG-TPKHNCLVLCGPPNTGKSCFAMS 476
Query: 520 LIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN-DEINAAKI 578
LIK+ G+ +++ L L +++ ++ + E + +
Sbjct: 477 LIKFFQGSVIS-------------FVNSQSHFWLQPLDNAKLGLLDDATEICWKYIDDYL 523
Query: 579 KQMTGGDCMTARLNYGNTYSES-PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637
+ + G+ ++ + P I N + + R +V F P
Sbjct: 524 RNLVDGNPISLDRKHKQLVQIKCPP---LLITTNINPMLDAKLRYLHSRMLVFQFQNPFP 580
>gi|138374826|gb|ABO76826.1| putative replication protein E1 [Human papillomavirus type 56]
Length = 636
Score = 39.7 bits (91), Expect = 1.9, Method: Composition-based stats.
Identities = 24/180 (13%), Positives = 59/180 (32%), Gaps = 23/180 (12%)
Query: 461 VEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTL-MN 519
EG + + + ++ + + + + L G + + G +GKS M+
Sbjct: 421 DEGGDWKPIVQFLR--YQGVDFISFL-SYFKLFLQG-TPKHNCLVLCGPPNTGKSCFAMS 476
Query: 520 LIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN-DEINAAKI 578
LIK+ G+ +++ L L +++ ++ + E + +
Sbjct: 477 LIKFFQGSVIS-------------FVNSQSHFWLQPLDNAKLGLLDDATEICWKYIDDYL 523
Query: 579 KQMTGGDCMTARLNYGNTYSES-PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637
+ + G+ ++ + P I N + + R +V F P
Sbjct: 524 RNLVDGNPISLDRKHKQLVQIKCPP---LLITTNINPMLDAKLRYLHSRMLVFQFQNPFP 580
>gi|47940067|gb|AAH71571.1| RFX2 protein [Homo sapiens]
Length = 723
Score = 39.7 bits (91), Expect = 2.0, Method: Composition-based stats.
Identities = 13/97 (13%), Positives = 38/97 (39%), Gaps = 7/97 (7%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
W+ D + E + SL Y + ++ + ++ + + + G++
Sbjct: 201 QWLLDNYETAEGVSLHRSSLYNHYLRHCQE---HKLDPVNAASFGKLI--RSVFMGLRTR 255
Query: 755 KIEKEWKSKRIIKGLKLKPA--FESVDDNSNIIDFKR 789
++ SK G++LKP + +++ + ++
Sbjct: 256 RLGTRGNSKYHYYGIRLKPDSPLNRLQEDTQYMAMRQ 292
>gi|123315456|ref|XP_001292104.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121867154|gb|EAX79174.1| hypothetical protein TVAG_544490 [Trichomonas vaginalis G3]
Length = 211
Score = 39.7 bits (91), Expect = 2.0, Method: Composition-based stats.
Identities = 36/210 (17%), Positives = 65/210 (30%), Gaps = 19/210 (9%)
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGN 595
M N GK N S+ + +++ +E D +N+ +K + Y +
Sbjct: 1 MTNLENICGKFNSSIENMK---LIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKD 57
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
+ + N D RRY+V+ +D + L T +
Sbjct: 58 QRVCENVANFIMVSNNSVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDF 113
Query: 656 KKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714
+ IP + E + Y+ +ID+ + SL
Sbjct: 114 YNHLFSYFMTLDISKFNPRQIPYTEERQTLLEANKS-VYELFIDETNFECLDER----SL 168
Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLKQ 744
Y +Y ++ Y S RT N+K
Sbjct: 169 YDEYKQYCQE---YGYMTASKRTFLANVKN 195
>gi|71897582|ref|ZP_00679827.1| Uncharacterised P-loop ATPase protein UPF0042 [Xylella fastidiosa
Ann-1]
gi|71732485|gb|EAO34538.1| Uncharacterised P-loop ATPase protein UPF0042 [Xylella fastidiosa
Ann-1]
Length = 290
Score = 39.7 bits (91), Expect = 2.0, Method: Composition-based stats.
Identities = 19/104 (18%), Positives = 36/104 (34%), Gaps = 9/104 (8%)
Query: 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVI-NAEASDIMQNRPPEAGKANPSLIRLM 557
I I G+ GSGKS + + + Y N + P + + L
Sbjct: 4 PEHSLIIISGLSGSGKSVALKTFEDL--DYYCSDNLPVELL-----PHFLRRRLRVAELS 56
Query: 558 GSRIVIISETNENDEINA-AKIKQMTGGDCMTARLNYGNTYSES 600
RI I + ++ + + + ARL + + +E+
Sbjct: 57 DQRIAIGIDIRSGSNLSELDQWRHTAKHYNIKARLLFFDASNET 100
>gi|225377945|ref|ZP_03755166.1| hypothetical protein ROSEINA2194_03605 [Roseburia inulinivorans DSM
16841]
gi|225210196|gb|EEG92550.1| hypothetical protein ROSEINA2194_03605 [Roseburia inulinivorans DSM
16841]
Length = 238
Score = 39.7 bits (91), Expect = 2.2, Method: Composition-based stats.
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 6/65 (9%)
Query: 462 EGEPSQEFLDL--VSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMN 519
E ++FL++ + F S E R GM+ F + G GSGKSTL+N
Sbjct: 1 MSEEEKKFLEIVDLKKGFGSGETRQEVLR--GMSF--SVAKGEFCVLLGPSGSGKSTLLN 56
Query: 520 LIKYA 524
+I
Sbjct: 57 IIGGI 61
>gi|118102235|ref|XP_423395.2| PREDICTED: similar to Selenium binding protein 1 [Gallus gallus]
Length = 935
Score = 39.7 bits (91), Expect = 2.2, Method: Composition-based stats.
Identities = 13/91 (14%), Positives = 31/91 (34%), Gaps = 9/91 (9%)
Query: 683 KEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNL 742
E + WI + + + + +Y +Y + N + +S +
Sbjct: 465 TAEYMHACN----WIRNHLEEHADTCLPKQDVYDAYRQYCD---NLCCRPLSAANFGKII 517
Query: 743 KQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773
++ IK ++ +SK G++ K
Sbjct: 518 RE--IFPNIKARRLGGRGQSKYCYSGIRRKT 546
>gi|283795219|ref|ZP_06344372.1| putative virulence-associated protein E [Clostridium sp. M62/1]
gi|291076864|gb|EFE14228.1| putative virulence-associated protein E [Clostridium sp. M62/1]
Length = 445
Score = 39.7 bits (91), Expect = 2.2, Method: Composition-based stats.
Identities = 44/263 (16%), Positives = 78/263 (29%), Gaps = 36/263 (13%)
Query: 470 LDLVSGYFESEEVMDYFTRCVGMALLG--------GNKAQRFIHIRGVGGSGKSTLMNLI 521
+ +F +V DY + + +LG G+K + + + G G+GKST L+
Sbjct: 125 IRFCLRHFLGADVDDYTYEALKLFMLGAITRAFKPGSKFEIMLCLVGGQGAGKSTFFRLL 184
Query: 522 KYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM 581
+ +L G I+ +SE + A K +
Sbjct: 185 A----------VRDEWFSDDLRKLDDD--NVYRKLQGHWIIEMSEM-----MATANAKSI 227
Query: 582 TGGDCMTARLN--YGNTYSESP---ASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI 636
+R Y Y P F + L D + RR+ IP
Sbjct: 228 EEIKSFLSRQKEVYKIPYETHPADRPRQCVFGGTSNALDFLPLDRSGNRRF--IPVMVYP 285
Query: 637 ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQG---TDTY 693
+ + ++ W + ++ Y S + + +E ++ DT
Sbjct: 286 EQAEVHILEDEAASRAYISQMWA-EAMEIYRSGMFKLSFSPAMQRYLKEHQRDFMPEDTK 344
Query: 694 QAWIDDCCDIGENLWEESHSLAK 716
I D S L K
Sbjct: 345 AGMIQAYLDKYTGETVCSKQLYK 367
>gi|291530654|emb|CBK96239.1| Predicted P-loop ATPase and inactivated derivatives [Eubacterium
siraeum 70/3]
Length = 442
Score = 39.7 bits (91), Expect = 2.2, Method: Composition-based stats.
Identities = 44/263 (16%), Positives = 78/263 (29%), Gaps = 36/263 (13%)
Query: 470 LDLVSGYFESEEVMDYFTRCVGMALLG--------GNKAQRFIHIRGVGGSGKSTLMNLI 521
+ +F +V DY + + +LG G+K + + + G G+GKST L+
Sbjct: 122 IRFCLRHFLGADVDDYTYEALKLFMLGAITRAFKPGSKFEIMLCLVGGQGAGKSTFFRLL 181
Query: 522 KYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM 581
+ +L G I+ +SE + A K +
Sbjct: 182 A----------VRDEWFSDDLRKLDDD--NVYRKLQGHWIIEMSEM-----MATANAKSI 224
Query: 582 TGGDCMTARLN--YGNTYSESP---ASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI 636
+R Y Y P F + L D + RR+ IP
Sbjct: 225 EEIKSFLSRQKEVYKIPYETHPADRPRQCVFGGTSNALDFLPLDRSGNRRF--IPVMVYP 282
Query: 637 ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQG---TDTY 693
+ + ++ W + ++ Y S + + +E ++ DT
Sbjct: 283 EQAEVHILEDEAASRAYISQMWA-EAMEIYRSGMFKLSFSPAMQRYLKEHQRDFMPEDTK 341
Query: 694 QAWIDDCCDIGENLWEESHSLAK 716
I D S L K
Sbjct: 342 AGMIQAYLDKYTGETVCSKQLYK 364
>gi|154417165|ref|XP_001581603.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121915832|gb|EAY20617.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 194
Score = 39.7 bits (91), Expect = 2.2, Method: Composition-based stats.
Identities = 29/189 (15%), Positives = 57/189 (30%), Gaps = 16/189 (8%)
Query: 560 RIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV 616
++++ +E D +N+ +K + Y + + + N
Sbjct: 2 KLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMK 61
Query: 617 RNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-I 675
D RRY+V+ +D + L T + + I
Sbjct: 62 LESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQI 117
Query: 676 PEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIST 735
P + E + Y+ +ID+ + + Y EY++ Y S
Sbjct: 118 PYTEERQTLLEANKS-VYELFIDETNFVSLDER-------SLYDEYKQYCQEYGYMAASK 169
Query: 736 RTVTLNLKQ 744
RT N+K
Sbjct: 170 RTFLANVKN 178
>gi|123351502|ref|XP_001295333.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121874076|gb|EAX82403.1| conserved hypothetical protein [Trichomonas vaginalis G3]
Length = 211
Score = 39.7 bits (91), Expect = 2.2, Method: Composition-based stats.
Identities = 34/212 (16%), Positives = 65/212 (30%), Gaps = 25/212 (11%)
Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNEND---EINAAKIKQMTGGDCMTARLNYGN 595
M N GK N S+ + +++ +E D +N+ +K + Y +
Sbjct: 1 MTNLENICGKFNSSIENMK---LIVCNEFQSIDTTKVLNSDALKSLITDKVGVVERKYKD 57
Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655
+ + + N D RRY+V+ +D + L T E
Sbjct: 58 SRVCENVANFIMVSNNAVPMKLESSD---RRYVVVR-KSDSHMQDTEYFDALSEYLTPEF 113
Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEER----QGTDTYQAWIDDCCDIGENLWEES 711
+ + + EE + Y+ ++D+ + +
Sbjct: 114 YNYLFSYFMTLDISKFNPRQ----ISHTEERQTLLEANKSVYELFVDETDFVSLDEK--- 166
Query: 712 HSLAKSYSEYREQELNYDRKRISTRTVTLNLK 743
Y EY++ Y S RT N+K
Sbjct: 167 ----SLYDEYKQYCQEYGYMAASKRTFLANVK 194
>gi|330832274|ref|YP_004401099.1| replication protein [Streptococcus suis ST3]
gi|329306497|gb|AEB80913.1| replication protein [Streptococcus suis ST3]
Length = 275
Score = 39.3 bits (90), Expect = 2.3, Method: Composition-based stats.
Identities = 25/153 (16%), Positives = 50/153 (32%), Gaps = 11/153 (7%)
Query: 4 MQWKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKID----KLPACGFGFVCG 59
M K+ A GF +IP+ +K+P ++ +++++I+ + P
Sbjct: 1 MGMKKAALAYQKKGFSVIPISPSNKQPMIKFA-DKPAMTAQEIEDFWSQYPDSNIA---- 55
Query: 60 VGEQPLYAFDIDSKDEKTANT-FKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKT 118
V + DID + + + TP ++ F + +
Sbjct: 56 VRTDKFFVIDIDLHGKHNGYESLANWEHLNLITPTLQAKTASGGKHIFYFKHPDVSMTQM 115
Query: 119 TESTQGHLDILGCGQYFVAYNIHPKTKKEYTWT 151
G +D+ +V K EY W
Sbjct: 116 IGFLPG-VDVKAHPNNYVLVAPSKTPKGEYAWD 147
>gi|227539429|ref|ZP_03969478.1| AAA family ATPase [Sphingobacterium spiritivorum ATCC 33300]
gi|227240742|gb|EEI90757.1| AAA family ATPase [Sphingobacterium spiritivorum ATCC 33300]
Length = 294
Score = 39.3 bits (90), Expect = 2.3, Method: Composition-based stats.
Identities = 28/164 (17%), Positives = 50/164 (30%), Gaps = 16/164 (9%)
Query: 503 FIHIRGVGGSGKSTLMNLIKYAFGNQ---------YVINAEASDIMQNRPPEAGKANPSL 553
I + G G+GK+ I + + A L
Sbjct: 70 LIILSGDAGTGKTISAEAIADRMLRELKKDGFFLKLSTRVRGEGLHGQMGNLVNDAFSEL 129
Query: 554 IRLMGSRIVIISETNENDEINAAK-IKQMTGGDCMTARLNYG--NTYSESPASFTPFIVP 610
G R + +E D I + + QM + + E F+
Sbjct: 130 KNQAGKRRIAFLLIDEADAIASTRSTMQMHQEEKAAVNTLIQKIDELRELNGRAILFMST 189
Query: 611 NKHLFVRNPDDAWWRR-YIVIPFDKPIANRDASFAQKLETKYTL 653
N+ F+ D+A RR I++ F++P + +K + L
Sbjct: 190 NRLHFL---DEAIIRRAAIILEFERPTFDERKQLFEKSIGEIGL 230
>gi|312376286|gb|EFR23420.1| hypothetical protein AND_12900 [Anopheles darlingi]
Length = 192
Score = 39.3 bits (90), Expect = 2.4, Method: Composition-based stats.
Identities = 20/143 (13%), Positives = 45/143 (31%), Gaps = 14/143 (9%)
Query: 632 FDKPIAN----RDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEER 687
F+K +++ + K+ E +L+ + G P + R
Sbjct: 30 FEKTVSDNTKKQIVEILDKISVLRPPERLLLYLR-----MPGGYPETDPLRQSQNPLGTR 84
Query: 688 QGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGF 747
+ W+ + N+ + Y Y + + K +ST +KQ
Sbjct: 85 LEINHTINWVRSHLEHDPNVSIPKQEVYDDYVAYCAR---INIKPLSTADFGKVMKQ--V 139
Query: 748 IGGIKREKIEKEWKSKRIIKGLK 770
GI+ ++ S+ ++
Sbjct: 140 FPGIRPRRLGTRGHSRYCYAAMR 162
>gi|116749688|ref|YP_846375.1| ATPase central domain-containing protein [Syntrophobacter
fumaroxidans MPOB]
gi|116698752|gb|ABK17940.1| AAA ATPase, central domain protein [Syntrophobacter fumaroxidans
MPOB]
Length = 360
Score = 39.3 bits (90), Expect = 2.4, Method: Composition-based stats.
Identities = 22/135 (16%), Positives = 44/135 (32%), Gaps = 14/135 (10%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANP--SLIRLMGSRI 561
I G G+GK+ + I Y+ A + + R + +
Sbjct: 133 IIFFGPPGTGKTHFVKAIAGVLSWWYIEIAPSMLMEDGTEKVGANLRRMMEKARQLEDAV 192
Query: 562 VIISETNE--NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNP 619
+ I E E A ++ + +T ++ A+ + F+++
Sbjct: 193 IFIDEFEELAGHRDRADRLDK-----SITNEFLKQVPLFKNEANKVLLVCATN--FIQHL 245
Query: 620 DDAWWR--RY-IVIP 631
D A R R+ +IP
Sbjct: 246 DPALLRPGRFDCIIP 260
>gi|221235009|ref|YP_002517445.1| ATP-dependent protease subunit [Caulobacter crescentus NA1000]
gi|220964181|gb|ACL95537.1| ATP-dependent protease subunit [Caulobacter crescentus NA1000]
Length = 279
Score = 39.3 bits (90), Expect = 2.4, Method: Composition-based stats.
Identities = 25/132 (18%), Positives = 41/132 (31%), Gaps = 22/132 (16%)
Query: 437 DLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDY---FTRCVGMA 493
D T + + FV LDL+ G + + R
Sbjct: 28 DFSTARLFRHEP-------ATAAFVPAPDYPLSLDLLVGI--DRQKARFVENLRRF---- 74
Query: 494 LLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKAN-PS 552
G + GV G+GKS++ A + Y + + I +R A
Sbjct: 75 AEGLPSNHVL--LWGVRGTGKSSVTKAAFMAMADTY---PDLTLIEVDRDEVAALPPLFD 129
Query: 553 LIRLMGSRIVII 564
L+R R V++
Sbjct: 130 LLRARAERFVVL 141
>gi|322412624|gb|EFY03532.1| Cobalt transport ATP-binding protein cbiO [Streptococcus
dysgalactiae subsp. dysgalactiae ATCC 27957]
Length = 484
Score = 39.3 bits (90), Expect = 2.4, Method: Composition-based stats.
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 503 FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537
I + G GSGKST + L+ + Y + S
Sbjct: 51 LIVLCGQSGSGKSTFLKLLNGLIPDYYTGALQGSL 85
>gi|209559896|ref|YP_002286368.1| ABC-type cobalt transport system, ATPase component CbiO
[Streptococcus pyogenes NZ131]
gi|209541097|gb|ACI61673.1| ABC-type cobalt transport system, ATPase component CbiO
[Streptococcus pyogenes NZ131]
Length = 484
Score = 39.3 bits (90), Expect = 2.4, Method: Composition-based stats.
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 503 FIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532
FI + G GSGKST + + + Y
Sbjct: 51 FIVLCGPSGSGKSTFLKFLNGIIPDYYAGK 80
>gi|94991098|ref|YP_599198.1| cobalt transport ATP-binding protein cbiO [Streptococcus pyogenes
MGAS10270]
gi|94544606|gb|ABF34654.1| Cobalt transport ATP-binding protein cbiO [Streptococcus pyogenes
MGAS10270]
Length = 484
Score = 39.3 bits (90), Expect = 2.4, Method: Composition-based stats.
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 503 FIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532
FI + G GSGKST + + + Y
Sbjct: 51 FIVLCGPSGSGKSTFLKFLNGIIPDYYAGK 80
>gi|56808186|ref|ZP_00365965.1| COG1122: ABC-type cobalt transport system, ATPase component
[Streptococcus pyogenes M49 591]
gi|306826758|ref|ZP_07460060.1| cobalt ATP binding cassette transporter, ABC protein cbiO
[Streptococcus pyogenes ATCC 10782]
gi|304431047|gb|EFM34054.1| cobalt ATP binding cassette transporter, ABC protein cbiO
[Streptococcus pyogenes ATCC 10782]
Length = 464
Score = 39.3 bits (90), Expect = 2.4, Method: Composition-based stats.
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 503 FIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532
FI + G GSGKST + + + Y
Sbjct: 31 FIVLCGPSGSGKSTFLKFLNGIIPDYYAGK 60
>gi|296101397|ref|YP_003611543.1| hypothetical protein ECL_01033 [Enterobacter cloacae subsp. cloacae
ATCC 13047]
gi|295055856|gb|ADF60594.1| hypothetical protein ECL_01033 [Enterobacter cloacae subsp. cloacae
ATCC 13047]
Length = 235
Score = 39.3 bits (90), Expect = 2.5, Method: Composition-based stats.
Identities = 15/62 (24%), Positives = 23/62 (37%), Gaps = 6/62 (9%)
Query: 503 FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIV 562
F+ + G GSGKSTL+N++ +M R L + G +
Sbjct: 42 FLALCGPSGSGKSTLLNILSGI------DKPGFGSVMFLRKLLNNLPEEQLAEIRGKHLG 95
Query: 563 II 564
I
Sbjct: 96 FI 97
>gi|321459205|gb|EFX70261.1| hypothetical protein DAPPUDRAFT_328248 [Daphnia pulex]
Length = 311
Score = 39.3 bits (90), Expect = 2.5, Method: Composition-based stats.
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 498 NKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538
N + + + G GG GKSTL ++I F N DI
Sbjct: 54 NVKHKILVLSGKGGVGKSTLTSMIARVFAQDLAKNVAVMDI 94
>gi|300781083|ref|ZP_07090937.1| AAA family ATPase [Corynebacterium genitalium ATCC 33030]
gi|300532790|gb|EFK53851.1| AAA family ATPase [Corynebacterium genitalium ATCC 33030]
Length = 448
Score = 39.3 bits (90), Expect = 2.5, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSR 560
+ + + G G+GK+T+ +LI A G +V + S ++ A +L R G R
Sbjct: 67 EASVILYGPPGTGKTTIASLIAAAMGQNFVGLSALSSGVKQVREVLDGARRNLAR--GQR 124
Query: 561 IVIISE 566
V+ +
Sbjct: 125 TVLFID 130
>gi|2352444|gb|AAC72442.1| orf109 [Streptococcus phage Sfi21]
Length = 109
Score = 39.3 bits (90), Expect = 2.5, Method: Composition-based stats.
Identities = 9/62 (14%), Positives = 21/62 (33%), Gaps = 3/62 (4%)
Query: 684 EEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLK 743
+E ++ +T ++++ + L Y + E N+ + S L
Sbjct: 2 QEFKEENNTVYKFLNEYLSDVVSTRIPVRFLWDVYRSWC-HEGNHTIPKKSN--FEKELA 58
Query: 744 QK 745
Q
Sbjct: 59 QN 60
>gi|308457820|ref|XP_003091273.1| hypothetical protein CRE_27914 [Caenorhabditis remanei]
gi|308257601|gb|EFP01554.1| hypothetical protein CRE_27914 [Caenorhabditis remanei]
Length = 2165
Score = 39.3 bits (90), Expect = 2.6, Method: Composition-based stats.
Identities = 19/118 (16%), Positives = 35/118 (29%), Gaps = 22/118 (18%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVI 563
+ G G+GKS L+N + ++ + + P A + L
Sbjct: 1896 FFVSGTAGTGKSFLINTLA----DELTLRFSNIEDSGTMPAVLLSAPTGIAALA------ 1945
Query: 564 ISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF---TPFIVPNKHLFVRN 618
IN I + G + + A + E P + N L + +
Sbjct: 1946 ---------INGNTIHSLLGIEVVQADHKSEEPFEELPPKKFDELKLLFSNVKLIIVD 1994
>gi|134085431|ref|NP_001076812.1| regulatory factor X, 5 (influences HLA class II expression)
[Xenopus (Silurana) tropicalis]
gi|134024343|gb|AAI35605.1| rfx5 protein [Xenopus (Silurana) tropicalis]
Length = 564
Score = 39.3 bits (90), Expect = 2.6, Method: Composition-based stats.
Identities = 13/78 (16%), Positives = 28/78 (35%), Gaps = 5/78 (6%)
Query: 696 WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755
WI + + + + +Y Y + N + +S +++ IK +
Sbjct: 88 WIRNHLEEHTDTCLPKQDVYDAYKRYCD---NLHGRPLSVANFGKIIRE--IFPNIKARR 142
Query: 756 IEKEWKSKRIIKGLKLKP 773
+ +SK GL+ K
Sbjct: 143 LGGRGQSKYCYSGLRRKS 160
>gi|194366529|ref|YP_002029139.1| hypothetical protein Smal_2756 [Stenotrophomonas maltophilia
R551-3]
gi|194349333|gb|ACF52456.1| protein of unknown function UPF0079 [Stenotrophomonas maltophilia
R551-3]
Length = 160
Score = 39.3 bits (90), Expect = 2.6, Method: Composition-based stats.
Identities = 18/73 (24%), Positives = 31/73 (42%), Gaps = 6/73 (8%)
Query: 482 VMDYFT------RCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535
++D+F +G L Q + +RG G+GKST + A G Q I +
Sbjct: 1 MIDFFLADSDATELLGQWLAATRPPQALVELRGDLGAGKSTTARALLRALGVQGAIRSPT 60
Query: 536 SDIMQNRPPEAGK 548
+++ P +G
Sbjct: 61 YTLVERYPLASGG 73
>gi|40675343|gb|AAH64876.1| rfx5 protein [Xenopus (Silurana) tropicalis]
Length = 557
Score = 39.3 bits (90), Expect = 2.6, Method: Composition-based stats.
Identities = 13/78 (16%), Positives = 28/78 (35%), Gaps = 5/78 (6%)
Query: 696 WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755
WI + + + + +Y Y + N + +S +++ IK +
Sbjct: 129 WIRNHLEEHTDTCLPKQDVYDAYKRYCD---NLHGRPLSVANFGKIIRE--IFPNIKARR 183
Query: 756 IEKEWKSKRIIKGLKLKP 773
+ +SK GL+ K
Sbjct: 184 LGGRGQSKYCYSGLRRKS 201
>gi|74205536|dbj|BAE21069.1| unnamed protein product [Mus musculus]
Length = 614
Score = 39.3 bits (90), Expect = 2.6, Method: Composition-based stats.
Identities = 12/83 (14%), Positives = 32/83 (38%), Gaps = 5/83 (6%)
Query: 692 TYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGI 751
T W+ D + E + +L Y + ++ + ++ + + + G+
Sbjct: 24 TLLQWLLDNYETAEGVSLPRSTLYNHYLRHCQE---HKLDPVNAASFGKLI--RSIFMGL 78
Query: 752 KREKIEKEWKSKRIIKGLKLKPA 774
+ ++ SK G+++KP
Sbjct: 79 RTRRLGTRGNSKYHYYGIRVKPD 101
>gi|146328978|ref|YP_001209187.1| virulence-associated protein VapE2 [Dichelobacter nodosus VCS1703A]
gi|146232448|gb|ABQ13426.1| virulence-associated protein VapE2 [Dichelobacter nodosus VCS1703A]
Length = 436
Score = 39.3 bits (90), Expect = 2.7, Method: Composition-based stats.
Identities = 59/311 (18%), Positives = 101/311 (32%), Gaps = 61/311 (19%)
Query: 485 YFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544
+F V A G + I ++G G GKS+ + ++ G+ Y + R
Sbjct: 154 FFRAAVTRAYRPGCQFDHVIILQGAQGIGKSSFLRILG---GDWYSSSI--------RKF 202
Query: 545 EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604
E +A + L G I I E + +IK + R YG SP
Sbjct: 203 EGKEA---IEALNGVLIGEIPELQGFSKAEVEEIKAFITRTEDSVRPAYGRWVEHSPRRT 259
Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVI------PFDKPIANRDASFAQKLETKYTLEAKKW 658
N ++R+ RR+ I F A RD FA+
Sbjct: 260 LFVGTTNDDDYLRDSTGN--RRFFPIICTKALDFKALEAARDQLFAE------------- 304
Query: 659 FLKGVKAYISKGLDVDIPEVCLKAKEEERQGT------DTYQAWID-------DCCDIGE 705
+ + + L + PE AK+ + + D W+D C+ GE
Sbjct: 305 AVALYHSMPNYPLTLHSPEARALAKQAQEEANYHDPWEDIILPWLDKEIRADHWECEAGE 364
Query: 706 --------NLWEESHSLAKSYSEYREQELNYDRKRIST---RTVTLNLKQKGFIGGIKRE 754
W +A + E L + ++++T + + +++ G+I G R
Sbjct: 365 YPPCDGHTAQWVMRDRVATL-EIWCE-CLKFPIEKMTTPNSKRIANIMRRSGWIRGNYRY 422
Query: 755 KIEKEWKSKRI 765
I
Sbjct: 423 GERYPASRGYI 433
>gi|330467546|ref|YP_004405289.1| ATPase [Verrucosispora maris AB-18-032]
gi|328810517|gb|AEB44689.1| ATPase [Verrucosispora maris AB-18-032]
Length = 370
Score = 39.3 bits (90), Expect = 2.7, Method: Composition-based stats.
Identities = 22/167 (13%), Positives = 49/167 (29%), Gaps = 17/167 (10%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAE----------------ASDIMQNRPPEAG 547
+ + G G+GKS L L+ A + + + I + + E+
Sbjct: 80 LLLIGDPGTGKSWLAELLSAAICRNSTLVVQGTAGTTEDHIKYSWNVSMVIAKGQSRESM 139
Query: 548 KANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPF 607
+P + + I E + + + ++ + + F+
Sbjct: 140 IPSPIMTAMEQGVIGRFEELTRSTSDVQDALISILSEKYVSIPELNDDNIVFAKPGFSII 199
Query: 608 IVPNKHLF-VRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTL 653
N V + A RR+ + R + + T+ L
Sbjct: 200 ATANSRDRGVNDLSSALKRRFNFVRIPVVTNKRSEAEIVRFRTEELL 246
>gi|327288722|ref|XP_003229075.1| PREDICTED: hypothetical protein LOC100556550 [Anolis carolinensis]
Length = 669
Score = 39.3 bits (90), Expect = 2.7, Method: Composition-based stats.
Identities = 12/78 (15%), Positives = 28/78 (35%), Gaps = 5/78 (6%)
Query: 696 WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755
WI + + + + +Y Y + N + +S +++ IK +
Sbjct: 98 WIQNHLEEYPDTCLPKQDVYDAYKRYCD---NLCCRSLSAANFGKIMRE--IFPNIKARR 152
Query: 756 IEKEWKSKRIIKGLKLKP 773
+ +SK G++ K
Sbjct: 153 LGGRGQSKYCYSGIRRKT 170
>gi|94994976|ref|YP_603074.1| cobalt ABC transporter ATP-binding protein [Streptococcus pyogenes
MGAS10750]
gi|94548484|gb|ABF38530.1| Cobalt transport ATP-binding protein cbiO [Streptococcus pyogenes
MGAS10750]
Length = 484
Score = 39.3 bits (90), Expect = 2.7, Method: Composition-based stats.
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 503 FIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532
FI + G GSGKST + + + Y
Sbjct: 51 FIVLCGSSGSGKSTFLKFLNGIIPDYYAGK 80
>gi|60417238|emb|CAH65781.1| putative replication protein [Sulfolobus neozealandicus]
Length = 1053
Score = 39.3 bits (90), Expect = 2.8, Method: Composition-based stats.
Identities = 28/165 (16%), Positives = 52/165 (31%), Gaps = 19/165 (11%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFG---NQYVINAEASDIMQN-----RPPEAGKANPSLIR 555
+ + G +GK+T+ ++ + +G + Y +E + Q R EAG + R
Sbjct: 691 LLLWGSSRTGKTTMGEIVLHLWGLIESDYENESEKDERFQGFGDKIRYVEAGSGANTEYR 750
Query: 556 LMGSRIVIISET----NENDEINAAKIKQMTGGD---CMTARLNYGNTYSESPASFTPFI 608
L G + + +K M PA +
Sbjct: 751 L-GEILRSSTLPFLVNEPGKMFEDTGVKDMIKHAVEKDEARARGERGRRRRIPAYAILIV 809
Query: 609 VPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTL 653
NK + DDA+ R++ I F + +K +
Sbjct: 810 TTNKEPPI--DDDAFMSRFLSIHF-SYAEKKSPEMQEKFRNEVMP 851
>gi|294670140|ref|ZP_06735065.1| P-loop hydrolase/phosphotransferase [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291308067|gb|EFE49310.1| P-loop hydrolase/phosphotransferase [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 161
Score = 39.3 bits (90), Expect = 2.8, Method: Composition-based stats.
Identities = 21/104 (20%), Positives = 36/104 (34%), Gaps = 14/104 (13%)
Query: 508 GVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP-PEAGKANPSLIRLMGSRIVIISE 566
G+G GK+T + A G + + + I+++ P P + L R S
Sbjct: 38 GLGA-GKTTFTRSLLRALGFEGAVKSPTYAIVESYPLPRFTLHHFDLYR--------FSA 88
Query: 567 TNENDEINAAKIKQMTGGDCM-TARLNYGNTYSESPASFTPFIV 609
E A + +TGG+ + PA T +
Sbjct: 89 PEE---WEDAGLDDLTGGNTVCLIEWPQKGGNFTPPADLTLTLT 129
>gi|16126236|ref|NP_420800.1| hypothetical protein CC_1993 [Caulobacter crescentus CB15]
gi|13423462|gb|AAK23968.1| conserved hypothetical protein [Caulobacter crescentus CB15]
Length = 289
Score = 39.3 bits (90), Expect = 2.8, Method: Composition-based stats.
Identities = 25/132 (18%), Positives = 41/132 (31%), Gaps = 22/132 (16%)
Query: 437 DLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDY---FTRCVGMA 493
D T + + FV LDL+ G + + R
Sbjct: 38 DFSTARLFRHEP-------ATAAFVPAPDYPLSLDLLVGI--DRQKARFVENLRRF---- 84
Query: 494 LLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKAN-PS 552
G + GV G+GKS++ A + Y + + I +R A
Sbjct: 85 AEGLPSNHVL--LWGVRGTGKSSVTKAAFMAMADTY---PDLTLIEVDRDEVAALPPLFD 139
Query: 553 LIRLMGSRIVII 564
L+R R V++
Sbjct: 140 LLRARAERFVVL 151
>gi|239918155|ref|YP_002957713.1| conserved hypothetical nucleotide-binding protein TIGR00150
[Micrococcus luteus NCTC 2665]
gi|281415658|ref|ZP_06247400.1| conserved hypothetical nucleotide-binding protein TIGR00150
[Micrococcus luteus NCTC 2665]
gi|239839362|gb|ACS31159.1| conserved hypothetical nucleotide-binding protein TIGR00150
[Micrococcus luteus NCTC 2665]
Length = 207
Score = 39.3 bits (90), Expect = 2.9, Method: Composition-based stats.
Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 3/97 (3%)
Query: 488 RCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAG 547
R G AL G +A + + G G+GK+T + FG + + + + P A
Sbjct: 31 RAFGRALAGVLRAGDVLILTGDLGAGKTTFTQGLASGFGVASGVVSPTFVLSRVHPAPAD 90
Query: 548 KA--NPSLIRLMGSRIVIISETNENDEINAAKIKQMT 582
P L+ + R+ E + D ++A+ + +T
Sbjct: 91 APAGTPDLVHVDAYRLRSAGELTDLD-LDASVDRSVT 126
>gi|303236078|ref|ZP_07322681.1| conserved hypothetical protein [Prevotella disiens FB035-09AN]
gi|302483951|gb|EFL46943.1| conserved hypothetical protein [Prevotella disiens FB035-09AN]
Length = 136
Score = 39.3 bits (90), Expect = 3.0, Method: Composition-based stats.
Identities = 13/66 (19%), Positives = 23/66 (34%), Gaps = 2/66 (3%)
Query: 494 LLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA--NP 551
+ G + G G+GK+T I G + VI + I+ G+ +
Sbjct: 18 FIAGIGDNKMFAFYGKMGAGKTTFTKAICEVLGVKDVITSPTFAIVNEYTDREGQPIYHF 77
Query: 552 SLIRLM 557
R+
Sbjct: 78 DFYRIK 83
>gi|91791270|ref|YP_552220.1| type II secretion system protein E [Polaromonas sp. JS666]
gi|91701151|gb|ABE47322.1| type II secretion system protein E [Polaromonas sp. JS666]
Length = 324
Score = 38.9 bits (89), Expect = 3.0, Method: Composition-based stats.
Identities = 12/46 (26%), Positives = 18/46 (39%)
Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528
T V L ++ I + G GSGK+TL N + +
Sbjct: 122 RGLLTEAVAAYLTNAVLEEKNIFLAGGTGSGKTTLANSLLAVIPDD 167
>gi|149022008|ref|ZP_01835970.1| phage protein [Streptococcus pneumoniae SP23-BS72]
gi|147929852|gb|EDK80841.1| phage protein [Streptococcus pneumoniae SP23-BS72]
Length = 273
Score = 38.9 bits (89), Expect = 3.1, Method: Composition-based stats.
Identities = 29/156 (18%), Positives = 47/156 (30%), Gaps = 13/156 (8%)
Query: 1 MPVMQWKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEK----IDKLPACGFGF 56
MP M KE A Q GF +IP+ +K P ++ ++ + D P
Sbjct: 1 MPSM--KEYALQYQKLGFSVIPINPKNKMPLIEFA-DKPAMTPSEIENFWDGYPNANIAL 57
Query: 57 VCGVGEQPLYAFDIDSK-DEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKK 115
+ DID + K + P ++ F +E
Sbjct: 58 ----KTTNFFVIDIDKHGKSNGFESLKKWKHLNLIEPTLQAKTASGGKHLFYFKREDEPI 113
Query: 116 KKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWT 151
+ G +DI +V K +Y W
Sbjct: 114 TQMIGFLPG-VDIKAHENNYVLVAPSATDKGQYEWD 148
>gi|195038619|ref|XP_001990754.1| GH18082 [Drosophila grimshawi]
gi|193894950|gb|EDV93816.1| GH18082 [Drosophila grimshawi]
Length = 1387
Score = 38.9 bits (89), Expect = 3.1, Method: Composition-based stats.
Identities = 12/84 (14%), Positives = 28/84 (33%), Gaps = 5/84 (5%)
Query: 687 RQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746
R + W+ + + + Y Y E+ + K +ST +KQ
Sbjct: 304 RSEINHTINWVRSHLEHDAQVSIPKQDVYNDYIVYCER---LNIKPLSTADFGKVMKQ-- 358
Query: 747 FIGGIKREKIEKEWKSKRIIKGLK 770
G++ ++ S+ ++
Sbjct: 359 VFPGVRPRRLGTRGNSRYCYAAMR 382
>gi|289705704|ref|ZP_06502088.1| hypothetical protein HMPREF0569_0280 [Micrococcus luteus SK58]
gi|289557544|gb|EFD50851.1| hypothetical protein HMPREF0569_0280 [Micrococcus luteus SK58]
Length = 208
Score = 38.9 bits (89), Expect = 3.1, Method: Composition-based stats.
Identities = 16/106 (15%), Positives = 39/106 (36%), Gaps = 1/106 (0%)
Query: 137 AYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKT 196
A +H T++ + R +E+ P + + +E + + + + + + T
Sbjct: 86 ASGVHATTRRVVSAGVLIQRADLEELPTHALDVLETVGRQAELLARGAAEIRDLDALEAT 145
Query: 197 WTNN-NNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETR 241
W + T R + +L+ G + ++ V A+H
Sbjct: 146 WMQLLRASRRTERIMVEWLADLGMDLLQRDYNRQREVAWALHAALE 191
>gi|288559629|ref|YP_003423115.1| cobyrinic acid a,c-diamide synthase CbiA2 [Methanobrevibacter
ruminantium M1]
gi|288542339|gb|ADC46223.1| cobyrinic acid a,c-diamide synthase CbiA2 [Methanobrevibacter
ruminantium M1]
Length = 266
Score = 38.9 bits (89), Expect = 3.2, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 31/67 (46%), Gaps = 3/67 (4%)
Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQY---VINAEASDIMQNRPPEAGKANPSLIRLMGSR 560
I I G GG GKST ++LI +I+ + ++ N+ A+ SL+ G R
Sbjct: 5 IFINGRGGCGKSTFISLIAKELSKNNKVLIIDMDEGNLGLNKMLNVDVADTSLMEYYGGR 64
Query: 561 IVIISET 567
I+ E
Sbjct: 65 DKIMGEI 71
>gi|126729753|ref|ZP_01745566.1| ABC transporter, ATP-binding protein [Sagittula stellata E-37]
gi|126709872|gb|EBA08925.1| ABC transporter, ATP-binding protein [Sagittula stellata E-37]
Length = 609
Score = 38.9 bits (89), Expect = 3.3, Method: Composition-based stats.
Identities = 33/200 (16%), Positives = 66/200 (33%), Gaps = 32/200 (16%)
Query: 506 IRGVGGSGKSTLMNLIKYAF----GNQYVINAEASDIMQNRPPEAGKAN---PSLIRLMG 558
+ G GSGKSTL+ ++ G++ V + M+ P +G + L
Sbjct: 36 LVGRNGSGKSTLLKVMAGTVEPDRGDRVVPVGTSVGYMEQEPDLSGFETLGDFAASTLQA 95
Query: 559 SRIVIISETNENDEINAAK-IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLF-- 615
S + + +E + + + + +GG+ R +E P N
Sbjct: 96 SEMYRVERASEGLKFDPDRPVATASGGER--RRAALAKLMAEEPELMLLDEPTNHLDIEA 153
Query: 616 ---VRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLD 672
+ + A R +++I + D F +L A W +G +G
Sbjct: 154 IQWLEDELKATRRAFVLI-------SHDRRFLTELTR-----ATLWIDRGAVRRQEQGF- 200
Query: 673 VDIPEVCLKAKEEERQGTDT 692
+++ + D
Sbjct: 201 ----AAFEAWRDKTWEEEDI 216
>gi|50285509|ref|XP_445183.1| hypothetical protein [Candida glabrata CBS 138]
gi|49524486|emb|CAG58083.1| unnamed protein product [Candida glabrata]
Length = 627
Score = 38.9 bits (89), Expect = 3.3, Method: Composition-based stats.
Identities = 24/115 (20%), Positives = 45/115 (39%), Gaps = 8/115 (6%)
Query: 677 EVCLKAKEEERQGTDTYQA--WIDDCC-DIGENLWEESHSLAKSYSEYREQELNYDRKRI 733
+ ++A E R+ A W+ C + N + + + YS Q +D K +
Sbjct: 137 KSVIQATEHSREREKQVFALIWLLQNCSNSDPNSFVPRGLIFEQYSIACRQ---FDLKPL 193
Query: 734 STRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDNSNIIDFK 788
S T+ + + +K ++ +SK GL+L +NII+ K
Sbjct: 194 SQATLGKLI--RTIFSNLKTRRLGMRGQSKYHYCGLRLLKIVTPAQQENNIIETK 246
>gi|298249962|ref|ZP_06973766.1| hypothetical protein Krac_2588 [Ktedonobacter racemifer DSM 44963]
gi|297547966|gb|EFH81833.1| hypothetical protein Krac_2588 [Ktedonobacter racemifer DSM 44963]
Length = 98
Score = 38.9 bits (89), Expect = 3.4, Method: Composition-based stats.
Identities = 13/84 (15%), Positives = 29/84 (34%), Gaps = 9/84 (10%)
Query: 691 DTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGG 750
+ + ++ +CC + E E L ++ Y ++ + + L Q+G+
Sbjct: 22 NVVEQFLQECCILEEQQSIEDAQLFANFRAYYKRVWQGEPHPALLGQFRVELTQRGYHSS 81
Query: 751 IKREKIEKEWKSKRIIKGLKLKPA 774
+ GL L+P
Sbjct: 82 SDKHPT---------WYGLTLRPK 96
>gi|328781962|ref|XP_391999.3| PREDICTED: NADPH oxidase 5 [Apis mellifera]
Length = 1084
Score = 38.9 bits (89), Expect = 3.5, Method: Composition-based stats.
Identities = 15/111 (13%), Positives = 35/111 (31%), Gaps = 9/111 (8%)
Query: 401 KAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPF 460
++ Q L+ ++ L D + + QD ++ G+ I + +
Sbjct: 38 NKEAFKQLLQDSTLMEKLFSLFDRNGDKILTQDEWIEFLKGRLKNEKSNDLIIQFENVAY 97
Query: 461 VEGEPSQEFLDLVSGYFESEEVMD-YFTRC----VGMALLGGNKAQRFIHI 506
+ + F ++E++D F R +G Q +
Sbjct: 98 SICCDNPVTFEKFQQIFSTKEIIDKLFRRIDEENLGYI----TSFQIMEFL 144
>gi|218289109|ref|ZP_03493345.1| AAA ATPase central domain protein [Alicyclobacillus acidocaldarius
LAA1]
gi|218240692|gb|EED07871.1| AAA ATPase central domain protein [Alicyclobacillus acidocaldarius
LAA1]
Length = 329
Score = 38.9 bits (89), Expect = 3.7, Method: Composition-based stats.
Identities = 19/110 (17%), Positives = 36/110 (32%), Gaps = 21/110 (19%)
Query: 434 GILDL-ETGQKVKPTKELYITKSTGT--------PFVEGEPSQEFLDLVSGYFESEEVMD 484
G++DL E G + + +G P ++ E L + EEV
Sbjct: 21 GVIDLYERGHI---DLNDALARISGVDDVSGSVAPPIDKRRIHELLRELDDLVGLEEVKR 77
Query: 485 YFTRCVGMALL-GGNKAQRF--------IHIRGVGGSGKSTLMNLIKYAF 525
+ + + R + G G+GK+T+ ++ F
Sbjct: 78 VVREIFALVYVQRLRREHRLKADPTVLHMIFYGNPGTGKTTVARILARMF 127
>gi|309776033|ref|ZP_07671025.1| ABC transporter, ATP-binding protein [Erysipelotrichaceae bacterium
3_1_53]
gi|308916315|gb|EFP62063.1| ABC transporter, ATP-binding protein [Erysipelotrichaceae bacterium
3_1_53]
Length = 237
Score = 38.9 bits (89), Expect = 3.9, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 2/57 (3%)
Query: 472 LVSGYFESEEVM-DYFTRCVG-MALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFG 526
+ F E + DY + ++ + G GSGKSTL+ I A+G
Sbjct: 5 FLRDIFIDWEKVTDYTQGIAALHSFDTLKFHKQITFLTGENGSGKSTLLEAIAVAYG 61
>gi|239916727|ref|YP_002956285.1| hypothetical protein Mlut_01660 [Micrococcus luteus NCTC 2665]
gi|281414816|ref|ZP_06246558.1| hypothetical protein MlutN2_06386 [Micrococcus luteus NCTC 2665]
gi|239837934|gb|ACS29731.1| hypothetical protein Mlut_01660 [Micrococcus luteus NCTC 2665]
Length = 208
Score = 38.6 bits (88), Expect = 3.9, Method: Composition-based stats.
Identities = 16/106 (15%), Positives = 39/106 (36%), Gaps = 1/106 (0%)
Query: 137 AYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKT 196
A +H T++ + R +E+ P + + +E + + + + + + T
Sbjct: 86 ASGVHAATRRVVSAGVLIQRADLEELPTHALDVLETVGRQAELLARSAAEMRDLDALEAT 145
Query: 197 WTNN-NNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETR 241
W + T R + +L+ G + ++ V A+H
Sbjct: 146 WMQLLRASRRTERIMVEWLADLGMDLLQRDYNRQREVAWALHAALE 191
>gi|241647636|ref|XP_002411177.1| rfx transcription factor, putative [Ixodes scapularis]
gi|215503807|gb|EEC13301.1| rfx transcription factor, putative [Ixodes scapularis]
Length = 487
Score = 38.6 bits (88), Expect = 4.0, Method: Composition-based stats.
Identities = 11/80 (13%), Positives = 30/80 (37%), Gaps = 5/80 (6%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
W+ D + E + +L Y + + + ++ + + + G++
Sbjct: 2 QWLIDNYETAEGVSLPRSTLYNHYLRHC---GEHKLEPVNAASFGKLI--RSVFLGLRTR 56
Query: 755 KIEKEWKSKRIIKGLKLKPA 774
++ SK G+++KP
Sbjct: 57 RLGTRGNSKYHYYGIRVKPN 76
>gi|326531442|dbj|BAJ97725.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 478
Score = 38.6 bits (88), Expect = 4.1, Method: Composition-based stats.
Identities = 22/144 (15%), Positives = 45/144 (31%), Gaps = 19/144 (13%)
Query: 494 LLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL 553
G + + + + G G+GK+ +EA+ + K
Sbjct: 232 FTGLRRPAKGLLLFGPPGNGKT--------MLAKAVASESEATFFNVSASSLTSKWVGEA 283
Query: 554 IRLMGSRIVIISETNEN----DEINAAKIKQMTGGDCMTARLNYGNTYSE-----SPASF 604
+L+ + ++ E + DEI++ ++ + + RL +P
Sbjct: 284 EKLVRTLFMVAVERQPSVIFMDEIDSVMSTRLASENDASRRLKSEFLIQFDGVTSNPDDL 343
Query: 605 TPFIVPNKHLFVRNPDDAWWRRYI 628
I DDA RR +
Sbjct: 344 VIVIGATNKPQ--ELDDAVLRRLV 365
>gi|225459417|ref|XP_002285821.1| PREDICTED: hypothetical protein [Vitis vinifera]
gi|302141895|emb|CBI19098.3| unnamed protein product [Vitis vinifera]
Length = 272
Score = 38.6 bits (88), Expect = 4.3, Method: Composition-based stats.
Identities = 41/264 (15%), Positives = 75/264 (28%), Gaps = 44/264 (16%)
Query: 194 SKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDE-WIPVVMAVHHETRGSSKGKEIARR 252
S+ + + + N + L C +++ + +E W V RR
Sbjct: 25 SQAAKSRISFRNPNSQSRVSLPCAFSPWFDSNRNEPWFRVSQ----------------RR 68
Query: 253 WSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLAS------R 306
+ S + +E Y+ D + + K + FYH +G LA R
Sbjct: 69 TLVRASKWTDEKSPYETLELDRDADEEKIKLAYRRLAKFYHPDVYDGRGTLAEGETAEAR 128
Query: 307 FSDAYNKAMFSIYKKGHFLYTAD--------TKAWYKKDKNNVYIWSLTLDKITASIMN- 357
F I K Y D ++AW + + D A+
Sbjct: 129 FIKIQAAYELLIDDKKRRQYDNDNRVNPMKASQAWMEWLMKKRKAFDQRGDMAIAAWAEQ 188
Query: 358 -------FLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNV-----EENSKAKST 405
+ D EE K K+ + +F+ +R + + K
Sbjct: 189 QQRELNLRARRLSRSKIDPEEERRILAKEKKASKEYFSNTLKRHTLILKKRDLMRKKAEE 248
Query: 406 AQSLEAGSIFSITSDLLDSSSRFL 429
+ + LD+ L
Sbjct: 249 EMKKSISQLLAAEGLELDTDDEAL 272
>gi|301767898|ref|XP_002919383.1| PREDICTED: DNA-binding protein RFX5-like [Ailuropoda melanoleuca]
gi|281352871|gb|EFB28455.1| hypothetical protein PANDA_007988 [Ailuropoda melanoleuca]
Length = 618
Score = 38.6 bits (88), Expect = 4.3, Method: Composition-based stats.
Identities = 14/81 (17%), Positives = 30/81 (37%), Gaps = 8/81 (9%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYRE--QELNYDRKRISTRTVTLNLKQKGFIGGIK 752
WI + + + S+ +Y +Y E + +ST +++ IK
Sbjct: 94 RWIRNHLEEHTDTCLPKQSVYDAYRKYCESLACC----RPLSTANFGKIIRE--IFPDIK 147
Query: 753 REKIEKEWKSKRIIKGLKLKP 773
++ +SK G++ K
Sbjct: 148 ARRLGGRGQSKYCYSGIRRKT 168
>gi|196475698|gb|ACG76407.1| regulatory factor X, 5, isoform 1 (predicted) [Otolemur garnettii]
Length = 610
Score = 38.6 bits (88), Expect = 4.3, Method: Composition-based stats.
Identities = 14/81 (17%), Positives = 30/81 (37%), Gaps = 8/81 (9%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYRE--QELNYDRKRISTRTVTLNLKQKGFIGGIK 752
WI + + + S+ +Y +Y E + +ST +++ IK
Sbjct: 94 RWIRNHLEEHTDTCLPKQSVYDAYRKYCESLACC----RPLSTANFGKIIRE--IFPDIK 147
Query: 753 REKIEKEWKSKRIIKGLKLKP 773
++ +SK G++ K
Sbjct: 148 ARRLGGRGQSKYCYSGIRRKT 168
>gi|183637590|gb|ACC64592.1| regulatory factor X, 5, isoform 2 (predicted) [Rhinolophus
ferrumequinum]
Length = 606
Score = 38.6 bits (88), Expect = 4.3, Method: Composition-based stats.
Identities = 14/81 (17%), Positives = 30/81 (37%), Gaps = 8/81 (9%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYRE--QELNYDRKRISTRTVTLNLKQKGFIGGIK 752
WI + + + S+ +Y +Y E + +ST +++ IK
Sbjct: 94 RWIRNHLEEHTDTCLPKQSVYDAYRKYCESLACC----RPLSTANFGKIIRE--IFPDIK 147
Query: 753 REKIEKEWKSKRIIKGLKLKP 773
++ +SK G++ K
Sbjct: 148 ARRLGGRGQSKYCYSGIRRKT 168
>gi|149751255|ref|XP_001492313.1| PREDICTED: similar to DNA-binding protein RFX5 (Regulatory factor X
5) [Equus caballus]
Length = 606
Score = 38.6 bits (88), Expect = 4.3, Method: Composition-based stats.
Identities = 14/81 (17%), Positives = 30/81 (37%), Gaps = 8/81 (9%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYRE--QELNYDRKRISTRTVTLNLKQKGFIGGIK 752
WI + + + S+ +Y +Y E + +ST +++ IK
Sbjct: 94 RWIRNHLEEHTDTCLPKQSVYDAYRKYCESLACC----RPLSTANFGKIIRE--IFPDIK 147
Query: 753 REKIEKEWKSKRIIKGLKLKP 773
++ +SK G++ K
Sbjct: 148 ARRLGGRGQSKYCYSGIRRKT 168
>gi|57098975|ref|XP_540315.1| PREDICTED: similar to DNA-binding protein RFX5 (Regulatory factor X
subunit 5) isoform 1 [Canis familiaris]
gi|73981414|ref|XP_850613.1| PREDICTED: similar to DNA-binding protein RFX5 (Regulatory factor X
subunit 5) isoform 2 [Canis familiaris]
gi|73981416|ref|XP_861896.1| PREDICTED: similar to DNA-binding protein RFX5 (Regulatory factor X
subunit 5) isoform 3 [Canis familiaris]
Length = 619
Score = 38.6 bits (88), Expect = 4.3, Method: Composition-based stats.
Identities = 14/81 (17%), Positives = 30/81 (37%), Gaps = 8/81 (9%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYRE--QELNYDRKRISTRTVTLNLKQKGFIGGIK 752
WI + + + S+ +Y +Y E + +ST +++ IK
Sbjct: 94 RWIRNHLEEHTDTCLPKQSVYDAYRKYCESLACC----RPLSTANFGKIIRE--IFPDIK 147
Query: 753 REKIEKEWKSKRIIKGLKLKP 773
++ +SK G++ K
Sbjct: 148 ARRLGGRGQSKYCYSGIRRKT 168
>gi|75075377|sp|Q4R3I8|RFX3_MACFA RecName: Full=Transcription factor RFX3; AltName: Full=Regulatory
factor X 3
gi|67971974|dbj|BAE02329.1| unnamed protein product [Macaca fascicularis]
Length = 749
Score = 38.6 bits (88), Expect = 4.4, Method: Composition-based stats.
Identities = 11/80 (13%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
W+ D + E + +L Y + ++ + ++ + + + G++
Sbjct: 185 QWLLDNYETAEGVSLPRSTLYDHYLRHCQE---HKLDPVNAASFGKLI--RSIFMGLRTR 239
Query: 755 KIEKEWKSKRIIKGLKLKPA 774
++ SK G+++KP
Sbjct: 240 RLGTRGNSKYHYYGIRVKPD 259
>gi|329664492|ref|NP_001192655.1| DNA-binding protein RFX5 [Bos taurus]
gi|297472710|ref|XP_002686088.1| PREDICTED: regulatory factor X, 5 (influences HLA class II
expression) [Bos taurus]
gi|296489603|gb|DAA31716.1| regulatory factor X, 5 (influences HLA class II expression) [Bos
taurus]
Length = 615
Score = 38.6 bits (88), Expect = 4.5, Method: Composition-based stats.
Identities = 14/81 (17%), Positives = 30/81 (37%), Gaps = 8/81 (9%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYRE--QELNYDRKRISTRTVTLNLKQKGFIGGIK 752
WI + + + S+ +Y +Y E + +ST +++ IK
Sbjct: 94 RWIRNHLEEHTDTCLPKQSVYDAYRKYCESLACC----RPLSTANFGKIIRE--IFPDIK 147
Query: 753 REKIEKEWKSKRIIKGLKLKP 773
++ +SK G++ K
Sbjct: 148 ARRLGGRGQSKYCYSGIRRKT 168
>gi|326426667|gb|EGD72237.1| hypothetical protein PTSG_00258 [Salpingoeca sp. ATCC 50818]
Length = 1207
Score = 38.6 bits (88), Expect = 4.6, Method: Composition-based stats.
Identities = 9/83 (10%), Positives = 32/83 (38%), Gaps = 5/83 (6%)
Query: 692 TYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGI 751
+ W+++ + E + + Y ++ ++ + ++Q+ +
Sbjct: 164 IIKQWLNEHYNPAEGVSVPRSLFYEHYCTLCKEA---SMSPLNAASFGKMIRQE--FPML 218
Query: 752 KREKIEKEWKSKRIIKGLKLKPA 774
+ ++ +SK GL ++P+
Sbjct: 219 RTRRLGTRGQSKYHYVGLGIRPS 241
>gi|150439358|emb|CAO72156.1| regulatory factor X, 5 (influences HLA class II expression) [Homo
sapiens]
Length = 230
Score = 38.6 bits (88), Expect = 4.6, Method: Composition-based stats.
Identities = 14/81 (17%), Positives = 30/81 (37%), Gaps = 8/81 (9%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYRE--QELNYDRKRISTRTVTLNLKQKGFIGGIK 752
WI + + + S+ +Y +Y E + +ST +++ IK
Sbjct: 94 RWIRNHLEEHTDTCLPKQSVYDAYRKYCESLACC----RPLSTANFGKIIRE--IFPDIK 147
Query: 753 REKIEKEWKSKRIIKGLKLKP 773
++ +SK G++ K
Sbjct: 148 ARRLGGRGQSKYCYSGIRRKT 168
>gi|296450779|ref|ZP_06892531.1| conserved hypothetical protein [Clostridium difficile NAP08]
gi|296260401|gb|EFH07244.1| conserved hypothetical protein [Clostridium difficile NAP08]
Length = 449
Score = 38.6 bits (88), Expect = 4.6, Method: Composition-based stats.
Identities = 46/270 (17%), Positives = 82/270 (30%), Gaps = 35/270 (12%)
Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539
E + + + G K + + + G G+GKST L+ A D
Sbjct: 142 EALKLFMLGAISRVFKPGCKFEVMLCLVGGQGAGKSTFFRLL-----------AVNDDWF 190
Query: 540 QNRPPEAGKANPSLIRLMGSRIVI-ISETNENDEINAAKIKQMTGGDCMTARLN--YGNT 596
+ + N + R M +I +SE I A K + +R Y
Sbjct: 191 SDDLKKLDDDN--VYRKMQGHWIIEMSEM-----IATANAKSIEEIKSFLSRQKETYKIP 243
Query: 597 YSESPASFT---PFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTL 653
Y PA F + L D RR+ +P + + T
Sbjct: 244 YETHPADRKRQCVFGGSSNTLDFLPLDRTGNRRF--LPVMVCPEQAEVHILEDEATSREY 301
Query: 654 EAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQG---TDTYQAWIDDCCDIGENLWEE 710
+ W + ++ Y S + + + + ++ DT I D +
Sbjct: 302 IIQMWA-EAMEIYRSGNFKLKLSRSTDEFLKAHQKEFMPEDTKAGQIIDYLERYSGNTVC 360
Query: 711 SHSLAK-----SYSEYREQELNYDRKRIST 735
S L + Y E ++ EL ++
Sbjct: 361 SKQLYREALGHDYDEPKQWELREINDIMNN 390
>gi|311254332|ref|XP_003125814.1| PREDICTED: DNA-binding protein RFX5-like [Sus scrofa]
Length = 619
Score = 38.6 bits (88), Expect = 4.6, Method: Composition-based stats.
Identities = 14/81 (17%), Positives = 30/81 (37%), Gaps = 8/81 (9%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYRE--QELNYDRKRISTRTVTLNLKQKGFIGGIK 752
WI + + + S+ +Y +Y E + +ST +++ IK
Sbjct: 94 RWIRNHLEEHTDTCLPKQSVYDAYRKYCESLACC----RPLSTANFGKIIRE--IFPDIK 147
Query: 753 REKIEKEWKSKRIIKGLKLKP 773
++ +SK G++ K
Sbjct: 148 ARRLGGRGQSKYCYSGIRRKT 168
>gi|125625002|ref|YP_001033485.1| galactokinase [Lactococcus lactis subsp. cremoris MG1363]
gi|11132466|sp|Q9S6S2|GAL1_LACLM RecName: Full=Galactokinase; AltName: Full=Galactose kinase
gi|4995690|emb|CAB44216.1| galactokinase [Lactococcus lactis]
gi|124493810|emb|CAL98802.1| GalK protein [Lactococcus lactis subsp. cremoris MG1363]
gi|300071800|gb|ADJ61200.1| galactokinase [Lactococcus lactis subsp. cremoris NZ9000]
Length = 399
Score = 38.6 bits (88), Expect = 4.7, Method: Composition-based stats.
Identities = 13/88 (14%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
Query: 344 WSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNK-NSKSPRFWFNTDYRRQNVEENSKA 402
+++ ++ +I+ ++K ++ + D N+ PR + Y + E
Sbjct: 185 FAIGFGEVKKAILLDCNTLKYEMVPVELRDYDIVIMNTNKPRALTESKYNERFAETREAL 244
Query: 403 KSTAQSLEAGSIFSITSDLLDSSSRFLG 430
K L+ S+ ++++ D+++ +G
Sbjct: 245 KRMQTKLDIQSLGELSNEEFDANTDLIG 272
>gi|116512906|ref|YP_811813.1| galactokinase [Lactococcus lactis subsp. cremoris SK11]
gi|116108560|gb|ABJ73700.1| galactokinase [Lactococcus lactis subsp. cremoris SK11]
Length = 399
Score = 38.6 bits (88), Expect = 4.7, Method: Composition-based stats.
Identities = 13/88 (14%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
Query: 344 WSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNK-NSKSPRFWFNTDYRRQNVEENSKA 402
+++ ++ +I+ ++K ++ + D N+ PR + Y + E
Sbjct: 185 FAIGFGEVKKAILLDCNTLKYEMVPVELRDYDIVIMNTNKPRALTESKYNERFAETREAL 244
Query: 403 KSTAQSLEAGSIFSITSDLLDSSSRFLG 430
K L+ S+ ++++ D+++ +G
Sbjct: 245 KRMQTKLDIQSLGELSNEEFDANTDLIG 272
>gi|154416313|ref|XP_001581179.1| ATPase, AAA family protein [Trichomonas vaginalis G3]
gi|121915404|gb|EAY20193.1| ATPase, AAA family protein [Trichomonas vaginalis G3]
Length = 432
Score = 38.6 bits (88), Expect = 4.7, Method: Composition-based stats.
Identities = 26/150 (17%), Positives = 44/150 (29%), Gaps = 22/150 (14%)
Query: 495 LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAG---KANP 551
G + + I + G G+GKS L + SD+ E+ +A
Sbjct: 158 TGDREPWKAILLYGPPGTGKSFLAKATASEANQSTFLTVSTSDLTSKWVGESEKLIRALF 217
Query: 552 SLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFT-----P 606
R I+ I E + + + T D +R +
Sbjct: 218 ETARKHTPAIIFIDEID-------SILSNRTENDSEASRRMKTEFLIQLDGVGKSMDGIL 270
Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPI 636
+ + + D A RR F+K I
Sbjct: 271 LLAATNIPW--DLDPAVRRR-----FEKRI 293
>gi|254439360|ref|ZP_05052854.1| hypothetical protein OA307_4230 [Octadecabacter antarcticus 307]
gi|198254806|gb|EDY79120.1| hypothetical protein OA307_4230 [Octadecabacter antarcticus 307]
Length = 623
Score = 38.6 bits (88), Expect = 4.8, Method: Composition-based stats.
Identities = 23/107 (21%), Positives = 39/107 (36%), Gaps = 14/107 (13%)
Query: 485 YFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544
+F +L G + +++ G GSGKS LM L+ G + R
Sbjct: 241 FFGWVAAASLGGFPAWRSHLYVYGSRGSGKSKLMELVAGLLGEFGGNVLNDATEAGIRQS 300
Query: 545 EAGKANPSLIRLMGSRIVIISETNENDEINA------AKIKQMTGGD 585
+A P LI E ++ + A ++M+GG+
Sbjct: 301 RNNQARPILIDEF--------EPDQGTRNGSKQDKMFALFRRMSGGE 339
>gi|189055332|dbj|BAG35216.1| unnamed protein product [Homo sapiens]
Length = 616
Score = 38.6 bits (88), Expect = 4.8, Method: Composition-based stats.
Identities = 14/81 (17%), Positives = 30/81 (37%), Gaps = 8/81 (9%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYRE--QELNYDRKRISTRTVTLNLKQKGFIGGIK 752
WI + + + S+ +Y +Y E + +ST +++ IK
Sbjct: 94 RWIRNHLEEHTDTCLPKQSVYDAYRKYCESLACC----RPLSTANFGKIIRE--IFPDIK 147
Query: 753 REKIEKEWKSKRIIKGLKLKP 773
++ +SK G++ K
Sbjct: 148 ARRLGGRGQSKYCYSGIRRKT 168
>gi|281182430|ref|NP_001162544.1| DNA-binding protein RFX5 [Papio anubis]
gi|163781020|gb|ABY40796.1| regulatory factor X, 5, isoform 2 (predicted) [Papio anubis]
Length = 621
Score = 38.6 bits (88), Expect = 4.8, Method: Composition-based stats.
Identities = 14/81 (17%), Positives = 30/81 (37%), Gaps = 8/81 (9%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYRE--QELNYDRKRISTRTVTLNLKQKGFIGGIK 752
WI + + + S+ +Y +Y E + +ST +++ IK
Sbjct: 94 RWIRNHLEEHTDTCLPKQSVYDAYRKYCESLACC----RPLSTANFGKIIRE--IFPDIK 147
Query: 753 REKIEKEWKSKRIIKGLKLKP 773
++ +SK G++ K
Sbjct: 148 ARRLGGRGQSKYCYSGIRRKT 168
>gi|150439360|emb|CAO72157.1| regulatory factor X, 5 (influences HLA class II expression) [Homo
sapiens]
Length = 184
Score = 38.6 bits (88), Expect = 4.8, Method: Composition-based stats.
Identities = 14/81 (17%), Positives = 30/81 (37%), Gaps = 8/81 (9%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYRE--QELNYDRKRISTRTVTLNLKQKGFIGGIK 752
WI + + + S+ +Y +Y E + +ST +++ IK
Sbjct: 94 RWIRNHLEEHTDTCLPKQSVYDAYRKYCESLACC----RPLSTANFGKIIRE--IFPDIK 147
Query: 753 REKIEKEWKSKRIIKGLKLKP 773
++ +SK G++ K
Sbjct: 148 ARRLGGRGQSKYCYSGIRRKT 168
>gi|62898784|dbj|BAD97246.1| regulatory factor X, 5 variant [Homo sapiens]
Length = 616
Score = 38.6 bits (88), Expect = 4.8, Method: Composition-based stats.
Identities = 14/81 (17%), Positives = 30/81 (37%), Gaps = 8/81 (9%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYRE--QELNYDRKRISTRTVTLNLKQKGFIGGIK 752
WI + + + S+ +Y +Y E + +ST +++ IK
Sbjct: 94 RWIRNHLEEHTDTCLPKQSVYDAYRKYCESLACC----RPLSTANFGKIIRE--IFPDIK 147
Query: 753 REKIEKEWKSKRIIKGLKLKP 773
++ +SK G++ K
Sbjct: 148 ARRLGGRGQSKYCYSGIRRKT 168
>gi|4557843|ref|NP_000440.1| DNA-binding protein RFX5 [Homo sapiens]
gi|71040090|ref|NP_001020774.1| DNA-binding protein RFX5 [Homo sapiens]
gi|1350587|sp|P48382|RFX5_HUMAN RecName: Full=DNA-binding protein RFX5; AltName: Full=Regulatory
factor X 5
gi|840789|emb|CAA59771.1| binding regulatory factor [Homo sapiens]
gi|17028337|gb|AAH17471.1| Regulatory factor X, 5 (influences HLA class II expression) [Homo
sapiens]
gi|55663923|emb|CAH70327.1| regulatory factor X, 5 (influences HLA class II expression) [Homo
sapiens]
gi|119573831|gb|EAW53446.1| regulatory factor X, 5 (influences HLA class II expression),
isoform CRA_a [Homo sapiens]
gi|119573832|gb|EAW53447.1| regulatory factor X, 5 (influences HLA class II expression),
isoform CRA_a [Homo sapiens]
gi|119573833|gb|EAW53448.1| regulatory factor X, 5 (influences HLA class II expression),
isoform CRA_a [Homo sapiens]
gi|123983134|gb|ABM83308.1| regulatory factor X, 5 (influences HLA class II expression)
[synthetic construct]
gi|123997837|gb|ABM86520.1| regulatory factor X, 5 (influences HLA class II expression)
[synthetic construct]
gi|208967272|dbj|BAG73650.1| regulatory factor X, 5 [synthetic construct]
Length = 616
Score = 38.6 bits (88), Expect = 4.8, Method: Composition-based stats.
Identities = 14/81 (17%), Positives = 30/81 (37%), Gaps = 8/81 (9%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYRE--QELNYDRKRISTRTVTLNLKQKGFIGGIK 752
WI + + + S+ +Y +Y E + +ST +++ IK
Sbjct: 94 RWIRNHLEEHTDTCLPKQSVYDAYRKYCESLACC----RPLSTANFGKIIRE--IFPDIK 147
Query: 753 REKIEKEWKSKRIIKGLKLKP 773
++ +SK G++ K
Sbjct: 148 ARRLGGRGQSKYCYSGIRRKT 168
>gi|297663656|ref|XP_002810286.1| PREDICTED: DNA-binding protein RFX5 isoform 1 [Pongo abelii]
gi|297663658|ref|XP_002810287.1| PREDICTED: DNA-binding protein RFX5 isoform 2 [Pongo abelii]
Length = 616
Score = 38.6 bits (88), Expect = 5.0, Method: Composition-based stats.
Identities = 14/81 (17%), Positives = 30/81 (37%), Gaps = 8/81 (9%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYRE--QELNYDRKRISTRTVTLNLKQKGFIGGIK 752
WI + + + S+ +Y +Y E + +ST +++ IK
Sbjct: 94 RWIRNHLEEHTDTCLPKQSVYDAYRKYCESLACC----RPLSTANFGKIIRE--IFPDIK 147
Query: 753 REKIEKEWKSKRIIKGLKLKP 773
++ +SK G++ K
Sbjct: 148 ARRLGGRGQSKYCYSGIRRKT 168
>gi|114559454|ref|XP_001171715.1| PREDICTED: regulatory factor X, 5 isoform 1 [Pan troglodytes]
gi|114559456|ref|XP_001171728.1| PREDICTED: regulatory factor X, 5 isoform 2 [Pan troglodytes]
gi|114559458|ref|XP_001171744.1| PREDICTED: regulatory factor X, 5 isoform 3 [Pan troglodytes]
gi|114559460|ref|XP_001171762.1| PREDICTED: regulatory factor X, 5 isoform 4 [Pan troglodytes]
gi|114559462|ref|XP_001171783.1| PREDICTED: regulatory factor X, 5 isoform 5 [Pan troglodytes]
gi|114559464|ref|XP_001171802.1| PREDICTED: regulatory factor X, 5 isoform 6 [Pan troglodytes]
gi|332810259|ref|XP_513794.2| PREDICTED: DNA-binding protein RFX5 isoform 7 [Pan troglodytes]
Length = 616
Score = 38.6 bits (88), Expect = 5.0, Method: Composition-based stats.
Identities = 14/81 (17%), Positives = 30/81 (37%), Gaps = 8/81 (9%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYRE--QELNYDRKRISTRTVTLNLKQKGFIGGIK 752
WI + + + S+ +Y +Y E + +ST +++ IK
Sbjct: 94 RWIRNHLEEHTDTCLPKQSVYDAYRKYCESLACC----RPLSTANFGKIIRE--IFPDIK 147
Query: 753 REKIEKEWKSKRIIKGLKLKP 773
++ +SK G++ K
Sbjct: 148 ARRLGGRGQSKYCYSGIRRKT 168
>gi|122889236|emb|CAM13081.1| regulatory factor X, 5 (influences HLA class II expression) [Homo
sapiens]
Length = 596
Score = 38.6 bits (88), Expect = 5.0, Method: Composition-based stats.
Identities = 14/81 (17%), Positives = 30/81 (37%), Gaps = 8/81 (9%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYRE--QELNYDRKRISTRTVTLNLKQKGFIGGIK 752
WI + + + S+ +Y +Y E + +ST +++ IK
Sbjct: 94 RWIRNHLEEHTDTCLPKQSVYDAYRKYCESLACC----RPLSTANFGKIIRE--IFPDIK 147
Query: 753 REKIEKEWKSKRIIKGLKLKP 773
++ +SK G++ K
Sbjct: 148 ARRLGGRGQSKYCYSGIRRKT 168
>gi|109016195|ref|XP_001106865.1| PREDICTED: DNA-binding protein RFX5 isoform 1 [Macaca mulatta]
gi|109016204|ref|XP_001107059.1| PREDICTED: DNA-binding protein RFX5 isoform 4 [Macaca mulatta]
Length = 620
Score = 38.6 bits (88), Expect = 5.0, Method: Composition-based stats.
Identities = 14/81 (17%), Positives = 30/81 (37%), Gaps = 8/81 (9%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYRE--QELNYDRKRISTRTVTLNLKQKGFIGGIK 752
WI + + + S+ +Y +Y E + +ST +++ IK
Sbjct: 94 RWIRNHLEEHTDTCLPKQSVYDAYRKYCESLACC----RPLSTANFGKIIRE--IFPDIK 147
Query: 753 REKIEKEWKSKRIIKGLKLKP 773
++ +SK G++ K
Sbjct: 148 ARRLGGRGQSKYCYSGIRRKT 168
>gi|121606209|ref|YP_983538.1| phage-like protein [Polaromonas naphthalenivorans CJ2]
gi|120595178|gb|ABM38617.1| conserved hypothetical phage-related protein [Polaromonas
naphthalenivorans CJ2]
Length = 962
Score = 38.6 bits (88), Expect = 5.0, Method: Composition-based stats.
Identities = 37/215 (17%), Positives = 67/215 (31%), Gaps = 24/215 (11%)
Query: 439 ETGQKVKPTKELYI--------TKSTGTPFVEGEPSQE-----FLDLVSGYFESEEVMDY 485
GQ + E Y T +Q+ ++ + F ++ ++
Sbjct: 529 RDGQIHEANAEDYFDIDKLAVKTLQKSIRLAVNTDAQDYDRTAWVQHLWNAFGAKGIVA- 587
Query: 486 FTRCVGMALLGGNKA--QRFIHI--RGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQN 541
T VG + Q F + G GSGK+TL+ + FG + +
Sbjct: 588 LTYWVGSLFAEQIREEHQSFPFLEIVGEPGSGKTTLIQFLWKLFGRDHEGLDPSKSTSAG 647
Query: 542 RPPEAGKANPSLIRLMGS-RIVIISETNENDEINAAKIKQMTGGDCM--TARLNYGNTYS 598
R + + I L+ S R + ++K G+ + T GN
Sbjct: 648 RMRTFTQVSNLPIVLIESDRETKTGHQAHVKSFDWDELKDAYNGNSIRTTGVKTGGNETY 707
Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFD 633
+ P + I N + A R + F+
Sbjct: 708 DPPFRASIVISQNNPVS---ASQAIMERICHMTFN 739
>gi|67967906|dbj|BAE00435.1| unnamed protein product [Macaca fascicularis]
Length = 620
Score = 38.6 bits (88), Expect = 5.0, Method: Composition-based stats.
Identities = 14/81 (17%), Positives = 30/81 (37%), Gaps = 8/81 (9%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYRE--QELNYDRKRISTRTVTLNLKQKGFIGGIK 752
WI + + + S+ +Y +Y E + +ST +++ IK
Sbjct: 94 RWIRNHLEEHTDTCLPKQSVYDAYRKYCESLACC----RPLSTANFGKIIRE--IFPDIK 147
Query: 753 REKIEKEWKSKRIIKGLKLKP 773
++ +SK G++ K
Sbjct: 148 ARRLGGRGQSKYCYSGIRRKT 168
>gi|55726074|emb|CAH89811.1| hypothetical protein [Pongo abelii]
Length = 597
Score = 38.2 bits (87), Expect = 5.1, Method: Composition-based stats.
Identities = 14/81 (17%), Positives = 30/81 (37%), Gaps = 8/81 (9%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYRE--QELNYDRKRISTRTVTLNLKQKGFIGGIK 752
WI + + + S+ +Y +Y E + +ST +++ IK
Sbjct: 94 RWIRNHLEEHTDTCLPKQSVYDAYRKYCESLACC----RPLSTANFGKIIRE--IFPDIK 147
Query: 753 REKIEKEWKSKRIIKGLKLKP 773
++ +SK G++ K
Sbjct: 148 ARRLGGRGQSKYCYSGIRRKT 168
>gi|33865636|ref|NP_897195.1| hypothetical protein SYNW1102 [Synechococcus sp. WH 8102]
gi|33632806|emb|CAE07617.1| conserved hypothetical protein [Synechococcus sp. WH 8102]
Length = 688
Score = 38.2 bits (87), Expect = 5.1, Method: Composition-based stats.
Identities = 33/177 (18%), Positives = 53/177 (29%), Gaps = 19/177 (10%)
Query: 4 MQWKEQAKQAIHNGFKLIPLRLGDKRPQ--------RLGKWEEQLLSSEKIDKLPAC--G 53
M W+E+ + GF L+P G+K L W + + + I +
Sbjct: 1 MSWREKLPEL--QGFALLPCGAGEKGKAPIDQVTGKHLNNWPDASFTPDDILAMNGKVKC 58
Query: 54 FGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEG- 112
G G L DID T G I R ++ + F++N +
Sbjct: 59 VGVRPGPDSDNLLFIDIDGASALTFCQEHRCDLKDAGWIIRRTTADDRLKVAFQINDQEL 118
Query: 113 ------IKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTP 163
I K + L++ V H + +Y W P P
Sbjct: 119 EEELSDIGKTVHSTGAGEQLELFWSTGQCVVLGDHKTSGGQYVWEGSPAEIDSPTEP 175
>gi|169410924|gb|ACA57934.1| regulatory factor X, 5, isoform 1 (predicted) [Callicebus moloch]
Length = 620
Score = 38.2 bits (87), Expect = 5.2, Method: Composition-based stats.
Identities = 14/81 (17%), Positives = 30/81 (37%), Gaps = 8/81 (9%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYRE--QELNYDRKRISTRTVTLNLKQKGFIGGIK 752
WI + + + S+ +Y +Y E + +ST +++ IK
Sbjct: 94 RWIRNHLEEHTDTCLPKQSVYDAYRKYCESLACC----RPLSTANFGKIIRE--IFPDIK 147
Query: 753 REKIEKEWKSKRIIKGLKLKP 773
++ +SK G++ K
Sbjct: 148 ARRLGGRGQSKYCYSGIRRKT 168
>gi|296228785|ref|XP_002759957.1| PREDICTED: DNA-binding protein RFX5 [Callithrix jacchus]
gi|166092114|gb|ABY82094.1| regulatory factor X, 5, isoform 1 (predicted) [Callithrix jacchus]
Length = 618
Score = 38.2 bits (87), Expect = 5.3, Method: Composition-based stats.
Identities = 14/81 (17%), Positives = 30/81 (37%), Gaps = 8/81 (9%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYRE--QELNYDRKRISTRTVTLNLKQKGFIGGIK 752
WI + + + S+ +Y +Y E + +ST +++ IK
Sbjct: 94 RWIRNHLEEHTDTCLPKQSVYDAYRKYCESLACC----RPLSTANFGKIIRE--IFPDIK 147
Query: 753 REKIEKEWKSKRIIKGLKLKP 773
++ +SK G++ K
Sbjct: 148 ARRLGGRGQSKYCYSGIRRKT 168
>gi|312210594|emb|CBX90680.1| similar to ATPase family AAA domain-containing protein 1
[Leptosphaeria maculans]
Length = 453
Score = 38.2 bits (87), Expect = 5.3, Method: Composition-based stats.
Identities = 47/300 (15%), Positives = 97/300 (32%), Gaps = 44/300 (14%)
Query: 355 IMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSI 414
N S+ + D+ R +E ++AK++A + + +I
Sbjct: 2 ASNKKSSLTGYLPDILMAAAAPLIAYFVIRNLLTRLDPEAQQKEEARAKASAATRKLDAI 61
Query: 415 FSITSD-----LLDSSSRFLGEQDGILDLETGQKVKPT-KELYITKSTGTPFVEGEPSQE 468
+ DS + D + +P ++L++T T +E +E
Sbjct: 62 LTSKKRRKSYGEYDSDA----------DTTDSRHRRPRIQDLHLTTYEQTIAMEVVAPEE 111
Query: 469 FLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRF---------IHIRGVGGSGKSTLMN 519
+ +++ V L + + + G G GK+ L
Sbjct: 112 IPVSFEDIGGLDSIIEELKESVIYPLTMPHLYSHSSSLLSAPSGVLLYGPPGCGKTMLAK 171
Query: 520 LIKYAFGNQYVINAEASDIMQNRPPEAG---KANPSLIRLMGSRIVIISETN-------E 569
+ + G + IN S + + ++ A SL R + IV I E +
Sbjct: 172 ALAHESGACF-INLHISTLTEKWYGDSNKLVNAVFSLARKLQPSIVFIDEIDAVLGQRRS 230
Query: 570 NDEINAAKIKQ--MTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627
+ + +K MT D + + + + +P N +++ D+A RR
Sbjct: 231 GEHEASGMVKAEFMTHWDGLASSTT---SGTSTPQRICILGATN---RIQDIDEAILRRM 284
>gi|332220264|ref|XP_003259277.1| PREDICTED: DNA-binding protein RFX5 isoform 1 [Nomascus leucogenys]
Length = 616
Score = 38.2 bits (87), Expect = 5.4, Method: Composition-based stats.
Identities = 14/81 (17%), Positives = 30/81 (37%), Gaps = 8/81 (9%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYRE--QELNYDRKRISTRTVTLNLKQKGFIGGIK 752
WI + + + S+ +Y +Y E + +ST +++ IK
Sbjct: 94 RWIRNHLEEHTDTCLPKQSVYDAYRKYCESLACC----RPLSTANFGKIIRE--IFPDIK 147
Query: 753 REKIEKEWKSKRIIKGLKLKP 773
++ +SK G++ K
Sbjct: 148 ARRLGGRGQSKYCYSGIRRKT 168
>gi|284005421|ref|NP_001164962.1| DNA-binding protein RFX5 [Oryctolagus cuniculus]
gi|217030856|gb|ACJ74018.1| regulatory factor X, 5, isoform 1 (predicted) [Oryctolagus
cuniculus]
Length = 615
Score = 38.2 bits (87), Expect = 5.4, Method: Composition-based stats.
Identities = 14/81 (17%), Positives = 30/81 (37%), Gaps = 8/81 (9%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYRE--QELNYDRKRISTRTVTLNLKQKGFIGGIK 752
WI + + + S+ +Y +Y E + +ST +++ IK
Sbjct: 94 RWIRNHLEEHTDTCLPKQSVYDAYRKYCESLACC----RPLSTANFGKIIRE--IFPDIK 147
Query: 753 REKIEKEWKSKRIIKGLKLKP 773
++ +SK G++ K
Sbjct: 148 ARRLGGRGQSKYCYSGIRRKT 168
>gi|159146234|gb|ABW90580.1| virulence-associated protein [Bacteriophage APSE-2]
Length = 378
Score = 38.2 bits (87), Expect = 5.5, Method: Composition-based stats.
Identities = 19/104 (18%), Positives = 33/104 (31%), Gaps = 10/104 (9%)
Query: 206 TNREITAFLSCFGEEFYNGSHDEWIPVV--MAVHHETRGSSKGKEIARRWSKQGSTYDEE 263
T ++ + L ++ W+ + +A +T + K + WS + D E
Sbjct: 198 TFEDLRSALWYPKILNQAENYPSWVDMGNRLAWVKDTHFEDEAKTMWLDWSSAAAKGDIE 257
Query: 264 NFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRF 307
KW + G SL G + P A R
Sbjct: 258 AAEAKWAELRADRTG-----YQAIFSLAQKAGWVNPG---AERL 293
>gi|226944813|ref|YP_002799886.1| ATP-binding protein of mannitol ABC transporter [Azotobacter
vinelandii DJ]
gi|226719740|gb|ACO78911.1| ATP-binding protein of mannitol ABC transporter [Azotobacter
vinelandii DJ]
Length = 369
Score = 38.2 bits (87), Expect = 5.6, Method: Composition-based stats.
Identities = 28/191 (14%), Positives = 53/191 (27%), Gaps = 27/191 (14%)
Query: 470 LDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529
+ + F+ E++ K F+ G G GKSTL+ LI
Sbjct: 6 IKNLKKGFDGTEIIKGIDL--------EIKDHEFVVFVGPSGCGKSTLLRLIAGL----- 52
Query: 530 VINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI----NAAKIKQMTGGD 585
++ G+ + + ++ + N + + G D
Sbjct: 53 ------EEVTSGHIHLDGQDITDVAPAKRNLAMVFQTYALYPHMSVSKNMSFALSLAGAD 106
Query: 586 CMTARLNYGNTYS----ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDA 641
E P + A R V FD+P++N DA
Sbjct: 107 KAEIERKVKEAARILELEHLLERKPKALSGGQRQRVAIGRAIVRHPKVFLFDEPLSNLDA 166
Query: 642 SFAQKLETKYT 652
+ ++ +
Sbjct: 167 ALRVQMRLELA 177
>gi|163760517|ref|ZP_02167598.1| Putative agmatine ureohydrolase [Hoeflea phototrophica DFL-43]
gi|162282132|gb|EDQ32422.1| Putative agmatine ureohydrolase [Hoeflea phototrophica DFL-43]
Length = 421
Score = 38.2 bits (87), Expect = 5.7, Method: Composition-based stats.
Identities = 18/106 (16%), Positives = 36/106 (33%), Gaps = 15/106 (14%)
Query: 557 MGSRIVIISETNENDEINAAKIKQMT---GGDCMTARLNYGNTYSESPASFTPFIVPNKH 613
G R + T N E+ +QMT GD T N T+ + + +
Sbjct: 134 QGVRKISALYTPYNYEMGIDLREQMTLCDVGDVFTIPANIEKTFDQVTRAVSHVASSGAL 193
Query: 614 LFVRNPDDAW------------WRRYIVIPFDKPIANRDASFAQKL 647
+ D + +R ++ FD+ I ++ +++
Sbjct: 194 PIIIGGDHSIGFPCVRGIAQCTSKRIGIVHFDRHIDIQEKDLDERM 239
>gi|327263459|ref|XP_003216537.1| PREDICTED: transcription factor RFX3-like [Anolis carolinensis]
Length = 749
Score = 38.2 bits (87), Expect = 5.8, Method: Composition-based stats.
Identities = 11/80 (13%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
W+ D + E + +L Y + ++ + ++ + + + G++
Sbjct: 185 QWLLDNYETAEGVSLPRSTLYNHYLRHCQE---HKLDPVNAASFGKLI--RSIFMGLRTR 239
Query: 755 KIEKEWKSKRIIKGLKLKPA 774
++ SK G+++KP
Sbjct: 240 RLGTRGNSKYHYYGIRVKPD 259
>gi|301767436|ref|XP_002919144.1| PREDICTED: transcription factor RFX3-like [Ailuropoda melanoleuca]
Length = 749
Score = 38.2 bits (87), Expect = 5.8, Method: Composition-based stats.
Identities = 11/80 (13%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
W+ D + E + +L Y + ++ + ++ + + + G++
Sbjct: 185 QWLLDNYETAEGVSLPRSTLYNHYLRHCQE---HKLDPVNAASFGKLI--RSIFMGLRTR 239
Query: 755 KIEKEWKSKRIIKGLKLKPA 774
++ SK G+++KP
Sbjct: 240 RLGTRGNSKYHYYGIRVKPD 259
>gi|301609336|ref|XP_002934229.1| PREDICTED: transcription factor RFX3 [Xenopus (Silurana)
tropicalis]
Length = 818
Score = 38.2 bits (87), Expect = 5.8, Method: Composition-based stats.
Identities = 11/80 (13%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
W+ D + E + +L Y + ++ + ++ + + + G++
Sbjct: 256 QWLLDNYETAEGVSLPRSTLYNHYLRHCQE---HKLDPVNAASFGKLI--RSIFMGLRTR 310
Query: 755 KIEKEWKSKRIIKGLKLKPA 774
++ SK G+++KP
Sbjct: 311 RLGTRGNSKYHYYGIRVKPD 330
>gi|297684493|ref|XP_002819877.1| PREDICTED: transcription factor RFX3-like isoform 1 [Pongo abelii]
gi|297684495|ref|XP_002819878.1| PREDICTED: transcription factor RFX3-like isoform 2 [Pongo abelii]
Length = 707
Score = 38.2 bits (87), Expect = 5.8, Method: Composition-based stats.
Identities = 11/80 (13%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
W+ D + E + +L Y + ++ + ++ + + + G++
Sbjct: 185 QWLLDNYETAEGVSLPRSTLYNHYLRHCQE---HKLDPVNAASFGKLI--RSIFMGLRTR 239
Query: 755 KIEKEWKSKRIIKGLKLKPA 774
++ SK G+++KP
Sbjct: 240 RLGTRGNSKYHYYGIRVKPD 259
>gi|297271002|ref|XP_001086729.2| PREDICTED: transcription factor RFX3 isoform 6 [Macaca mulatta]
Length = 782
Score = 38.2 bits (87), Expect = 5.8, Method: Composition-based stats.
Identities = 11/80 (13%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
W+ D + E + +L Y + ++ + ++ + + + G++
Sbjct: 218 QWLLDNYETAEGVSLPRSTLYNHYLRHCQE---HKLDPVNAASFGKLI--RSIFMGLRTR 272
Query: 755 KIEKEWKSKRIIKGLKLKPA 774
++ SK G+++KP
Sbjct: 273 RLGTRGNSKYHYYGIRVKPD 292
>gi|297477836|ref|XP_002689661.1| PREDICTED: regulatory factor X, 3 (influences HLA class II
expression) [Bos taurus]
gi|296484788|gb|DAA26903.1| regulatory factor X, 3 (influences HLA class II expression) [Bos
taurus]
Length = 749
Score = 38.2 bits (87), Expect = 5.8, Method: Composition-based stats.
Identities = 11/80 (13%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
W+ D + E + +L Y + ++ + ++ + + + G++
Sbjct: 185 QWLLDNYETAEGVSLPRSTLYNHYLRHCQE---HKLDPVNAASFGKLI--RSIFMGLRTR 239
Query: 755 KIEKEWKSKRIIKGLKLKPA 774
++ SK G+++KP
Sbjct: 240 RLGTRGNSKYHYYGIRVKPD 259
>gi|292630951|sp|Q0V9K5|RFX3_XENTR RecName: Full=Transcription factor RFX3; AltName: Full=Regulatory
factor X 3
Length = 749
Score = 38.2 bits (87), Expect = 5.8, Method: Composition-based stats.
Identities = 11/80 (13%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
W+ D + E + +L Y + ++ + ++ + + + G++
Sbjct: 185 QWLLDNYETAEGVSLPRSTLYNHYLRHCQE---HKLDPVNAASFGKLI--RSIFMGLRTR 239
Query: 755 KIEKEWKSKRIIKGLKLKPA 774
++ SK G+++KP
Sbjct: 240 RLGTRGNSKYHYYGIRVKPD 259
>gi|291383308|ref|XP_002708228.1| PREDICTED: regulatory factor X, 3 (influences HLA class II
expression) [Oryctolagus cuniculus]
Length = 749
Score = 38.2 bits (87), Expect = 5.8, Method: Composition-based stats.
Identities = 11/80 (13%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
W+ D + E + +L Y + ++ + ++ + + + G++
Sbjct: 185 QWLLDNYETAEGVSLPRSTLYNHYLRHCQE---HKLDPVNAASFGKLI--RSIFMGLRTR 239
Query: 755 KIEKEWKSKRIIKGLKLKPA 774
++ SK G+++KP
Sbjct: 240 RLGTRGNSKYHYYGIRVKPD 259
>gi|281349305|gb|EFB24889.1| hypothetical protein PANDA_007728 [Ailuropoda melanoleuca]
Length = 677
Score = 38.2 bits (87), Expect = 5.8, Method: Composition-based stats.
Identities = 11/80 (13%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
W+ D + E + +L Y + ++ + ++ + + + G++
Sbjct: 113 QWLLDNYETAEGVSLPRSTLYNHYLRHCQE---HKLDPVNAASFGKLI--RSIFMGLRTR 167
Query: 755 KIEKEWKSKRIIKGLKLKPA 774
++ SK G+++KP
Sbjct: 168 RLGTRGNSKYHYYGIRVKPD 187
>gi|224091292|ref|XP_002195859.1| PREDICTED: hypothetical protein [Taeniopygia guttata]
Length = 749
Score = 38.2 bits (87), Expect = 5.8, Method: Composition-based stats.
Identities = 11/80 (13%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
W+ D + E + +L Y + ++ + ++ + + + G++
Sbjct: 185 QWLLDNYETAEGVSLPRSTLYNHYLRHCQE---HKLDPVNAASFGKLI--RSIFMGLRTR 239
Query: 755 KIEKEWKSKRIIKGLKLKPA 774
++ SK G+++KP
Sbjct: 240 RLGTRGNSKYHYYGIRVKPD 259
>gi|311245820|ref|XP_003121969.1| PREDICTED: transcription factor RFX3-like [Sus scrofa]
Length = 740
Score = 38.2 bits (87), Expect = 5.8, Method: Composition-based stats.
Identities = 11/80 (13%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
W+ D + E + +L Y + ++ + ++ + + + G++
Sbjct: 176 QWLLDNYETAEGVSLPRSTLYNHYLRHCQE---HKLDPVNAASFGKLI--RSIFMGLRTR 230
Query: 755 KIEKEWKSKRIIKGLKLKPA 774
++ SK G+++KP
Sbjct: 231 RLGTRGNSKYHYYGIRVKPD 250
>gi|158260103|dbj|BAF82229.1| unnamed protein product [Homo sapiens]
Length = 749
Score = 38.2 bits (87), Expect = 5.8, Method: Composition-based stats.
Identities = 11/80 (13%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
W+ D + E + +L Y + ++ + ++ + + + G++
Sbjct: 185 QWLLDNYETAEGVSLPRSTLYNHYLRHCQE---HKLDPVNAASFGKLI--RSIFMGLRTR 239
Query: 755 KIEKEWKSKRIIKGLKLKPA 774
++ SK G+++KP
Sbjct: 240 RLGTRGNSKYHYYGIRVKPD 259
>gi|149736841|ref|XP_001491823.1| PREDICTED: regulatory factor X, 3 (influences HLA class II
expression) [Equus caballus]
Length = 749
Score = 38.2 bits (87), Expect = 5.8, Method: Composition-based stats.
Identities = 11/80 (13%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
W+ D + E + +L Y + ++ + ++ + + + G++
Sbjct: 185 QWLLDNYETAEGVSLPRSTLYNHYLRHCQE---HKLDPVNAASFGKLI--RSIFMGLRTR 239
Query: 755 KIEKEWKSKRIIKGLKLKPA 774
++ SK G+++KP
Sbjct: 240 RLGTRGNSKYHYYGIRVKPD 259
>gi|149412868|ref|XP_001506894.1| PREDICTED: similar to Regulatory factor X, 3 (influences HLA class
II expression) [Ornithorhynchus anatinus]
Length = 797
Score = 38.2 bits (87), Expect = 5.8, Method: Composition-based stats.
Identities = 11/80 (13%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
W+ D + E + +L Y + ++ + ++ + + + G++
Sbjct: 234 QWLLDNYETAEGVSLPRSTLYNHYLRHCQE---HKLDPVNAASFGKLI--RSIFMGLRTR 288
Query: 755 KIEKEWKSKRIIKGLKLKPA 774
++ SK G+++KP
Sbjct: 289 RLGTRGNSKYHYYGIRVKPD 308
>gi|126335607|ref|XP_001364935.1| PREDICTED: similar to Regulatory factor X, 3 (influences HLA class
II expression) [Monodelphis domestica]
Length = 749
Score = 38.2 bits (87), Expect = 5.8, Method: Composition-based stats.
Identities = 11/80 (13%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
W+ D + E + +L Y + ++ + ++ + + + G++
Sbjct: 185 QWLLDNYETAEGVSLPRSTLYNHYLRHCQE---HKLDPVNAASFGKLI--RSIFMGLRTR 239
Query: 755 KIEKEWKSKRIIKGLKLKPA 774
++ SK G+++KP
Sbjct: 240 RLGTRGNSKYHYYGIRVKPD 259
>gi|119900355|ref|XP_618263.3| PREDICTED: regulatory factor X3, partial [Bos taurus]
Length = 677
Score = 38.2 bits (87), Expect = 5.8, Method: Composition-based stats.
Identities = 11/80 (13%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
W+ D + E + +L Y + ++ + ++ + + + G++
Sbjct: 113 QWLLDNYETAEGVSLPRSTLYNHYLRHCQE---HKLDPVNAASFGKLI--RSIFMGLRTR 167
Query: 755 KIEKEWKSKRIIKGLKLKPA 774
++ SK G+++KP
Sbjct: 168 RLGTRGNSKYHYYGIRVKPD 187
>gi|119579198|gb|EAW58794.1| regulatory factor X, 3 (influences HLA class II expression),
isoform CRA_a [Homo sapiens]
Length = 540
Score = 38.2 bits (87), Expect = 5.8, Method: Composition-based stats.
Identities = 11/80 (13%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
W+ D + E + +L Y + ++ + ++ + + + G++
Sbjct: 185 QWLLDNYETAEGVSLPRSTLYNHYLRHCQE---HKLDPVNAASFGKLI--RSIFMGLRTR 239
Query: 755 KIEKEWKSKRIIKGLKLKPA 774
++ SK G+++KP
Sbjct: 240 RLGTRGNSKYHYYGIRVKPD 259
>gi|114623638|ref|XP_001135492.1| PREDICTED: regulatory factor X3 isoform 1 [Pan troglodytes]
Length = 416
Score = 38.2 bits (87), Expect = 5.8, Method: Composition-based stats.
Identities = 11/80 (13%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
W+ D + E + +L Y + ++ + ++ + + + G++
Sbjct: 185 QWLLDNYETAEGVSLPRSTLYNHYLRHCQE---HKLDPVNAASFGKLI--RSIFMGLRTR 239
Query: 755 KIEKEWKSKRIIKGLKLKPA 774
++ SK G+++KP
Sbjct: 240 RLGTRGNSKYHYYGIRVKPD 259
>gi|114623630|ref|XP_520464.2| PREDICTED: transcription factor RFX3 isoform 5 [Pan troglodytes]
Length = 739
Score = 38.2 bits (87), Expect = 5.8, Method: Composition-based stats.
Identities = 11/80 (13%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
W+ D + E + +L Y + ++ + ++ + + + G++
Sbjct: 185 QWLLDNYETAEGVSLPRSTLYNHYLRHCQE---HKLDPVNAASFGKLI--RSIFMGLRTR 239
Query: 755 KIEKEWKSKRIIKGLKLKPA 774
++ SK G+++KP
Sbjct: 240 RLGTRGNSKYHYYGIRVKPD 259
>gi|114623634|ref|XP_001136079.1| PREDICTED: regulatory factor X3 isoform 3 [Pan troglodytes]
Length = 724
Score = 38.2 bits (87), Expect = 5.8, Method: Composition-based stats.
Identities = 11/80 (13%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
W+ D + E + +L Y + ++ + ++ + + + G++
Sbjct: 160 QWLLDNYETAEGVSLPRSTLYNHYLRHCQE---HKLDPVNAASFGKLI--RSIFMGLRTR 214
Query: 755 KIEKEWKSKRIIKGLKLKPA 774
++ SK G+++KP
Sbjct: 215 RLGTRGNSKYHYYGIRVKPD 234
>gi|114623632|ref|XP_001136158.1| PREDICTED: regulatory factor X3 isoform 4 [Pan troglodytes]
Length = 749
Score = 38.2 bits (87), Expect = 5.8, Method: Composition-based stats.
Identities = 11/80 (13%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
W+ D + E + +L Y + ++ + ++ + + + G++
Sbjct: 185 QWLLDNYETAEGVSLPRSTLYNHYLRHCQE---HKLDPVNAASFGKLI--RSIFMGLRTR 239
Query: 755 KIEKEWKSKRIIKGLKLKPA 774
++ SK G+++KP
Sbjct: 240 RLGTRGNSKYHYYGIRVKPD 259
>gi|114623636|ref|XP_001135994.1| PREDICTED: regulatory factor X3 isoform 2 [Pan troglodytes]
Length = 697
Score = 38.2 bits (87), Expect = 5.8, Method: Composition-based stats.
Identities = 11/80 (13%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
W+ D + E + +L Y + ++ + ++ + + + G++
Sbjct: 185 QWLLDNYETAEGVSLPRSTLYNHYLRHCQE---HKLDPVNAASFGKLI--RSIFMGLRTR 239
Query: 755 KIEKEWKSKRIIKGLKLKPA 774
++ SK G+++KP
Sbjct: 240 RLGTRGNSKYHYYGIRVKPD 259
>gi|111305724|gb|AAI21501.1| rfx3 protein [Xenopus (Silurana) tropicalis]
Length = 783
Score = 38.2 bits (87), Expect = 5.8, Method: Composition-based stats.
Identities = 11/80 (13%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
W+ D + E + +L Y + ++ + ++ + + + G++
Sbjct: 219 QWLLDNYETAEGVSLPRSTLYNHYLRHCQE---HKLDPVNAASFGKLI--RSIFMGLRTR 273
Query: 755 KIEKEWKSKRIIKGLKLKPA 774
++ SK G+++KP
Sbjct: 274 RLGTRGNSKYHYYGIRVKPD 293
>gi|296189854|ref|XP_002806534.1| PREDICTED: LOW QUALITY PROTEIN: transcription factor RFX3-like
[Callithrix jacchus]
gi|332249547|ref|XP_003273919.1| PREDICTED: transcription factor RFX3-like isoform 1 [Nomascus
leucogenys]
gi|332249549|ref|XP_003273920.1| PREDICTED: transcription factor RFX3-like isoform 2 [Nomascus
leucogenys]
Length = 749
Score = 38.2 bits (87), Expect = 5.8, Method: Composition-based stats.
Identities = 11/80 (13%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
W+ D + E + +L Y + ++ + ++ + + + G++
Sbjct: 185 QWLLDNYETAEGVSLPRSTLYNHYLRHCQE---HKLDPVNAASFGKLI--RSIFMGLRTR 239
Query: 755 KIEKEWKSKRIIKGLKLKPA 774
++ SK G+++KP
Sbjct: 240 RLGTRGNSKYHYYGIRVKPD 259
>gi|45709612|gb|AAH67778.1| RFX3 protein [Homo sapiens]
Length = 413
Score = 38.2 bits (87), Expect = 5.8, Method: Composition-based stats.
Identities = 11/80 (13%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
W+ D + E + +L Y + ++ + ++ + + + G++
Sbjct: 185 QWLLDNYETAEGVSLPRSTLYNHYLRHCQE---HKLDPVNAASFGKLI--RSIFMGLRTR 239
Query: 755 KIEKEWKSKRIIKGLKLKPA 774
++ SK G+++KP
Sbjct: 240 RLGTRGNSKYHYYGIRVKPD 259
>gi|4506495|ref|NP_002910.1| transcription factor RFX3 isoform a [Homo sapiens]
gi|452404|emb|CAA53706.1| DNA binding protein RFX3 [Homo sapiens]
gi|55959572|emb|CAI13404.1| regulatory factor X, 3 (influences HLA class II expression) [Homo
sapiens]
gi|57162137|emb|CAI40200.1| regulatory factor X, 3 (influences HLA class II expression) [Homo
sapiens]
gi|57209027|emb|CAI41216.1| regulatory factor X, 3 (influences HLA class II expression) [Homo
sapiens]
gi|119579199|gb|EAW58795.1| regulatory factor X, 3 (influences HLA class II expression),
isoform CRA_b [Homo sapiens]
gi|119579203|gb|EAW58799.1| regulatory factor X, 3 (influences HLA class II expression),
isoform CRA_b [Homo sapiens]
Length = 707
Score = 38.2 bits (87), Expect = 5.8, Method: Composition-based stats.
Identities = 11/80 (13%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
W+ D + E + +L Y + ++ + ++ + + + G++
Sbjct: 185 QWLLDNYETAEGVSLPRSTLYNHYLRHCQE---HKLDPVNAASFGKLI--RSIFMGLRTR 239
Query: 755 KIEKEWKSKRIIKGLKLKPA 774
++ SK G+++KP
Sbjct: 240 RLGTRGNSKYHYYGIRVKPD 259
>gi|26325973|dbj|BAC26730.1| unnamed protein product [Mus musculus]
Length = 749
Score = 38.2 bits (87), Expect = 5.8, Method: Composition-based stats.
Identities = 11/80 (13%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
W+ D + E + +L Y + ++ + ++ + + + G++
Sbjct: 185 QWLLDNYETAEGVSLPRSTLYNHYLRHCQE---HKLDPVNAASFGKLI--RSIFMGLRTR 239
Query: 755 KIEKEWKSKRIIKGLKLKPA 774
++ SK G+++KP
Sbjct: 240 RLGTRGNSKYHYYGIRVKPD 259
>gi|452422|emb|CAA53704.1| DNA binding protein RFX3 [Mus musculus]
Length = 189
Score = 38.2 bits (87), Expect = 5.8, Method: Composition-based stats.
Identities = 11/80 (13%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
W+ D + E + +L Y + ++ + ++ + + + G++
Sbjct: 49 QWLLDNYETAEGVSLPRSTLYNHYLRHCQE---HKLDPVNAASFGKLI--RSIFMGLRTR 103
Query: 755 KIEKEWKSKRIIKGLKLKPA 774
++ SK G+++KP
Sbjct: 104 RLGTRGNSKYHYYGIRVKPD 123
>gi|149062647|gb|EDM13070.1| rCG47137 [Rattus norvegicus]
Length = 749
Score = 38.2 bits (87), Expect = 5.8, Method: Composition-based stats.
Identities = 11/80 (13%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
W+ D + E + +L Y + ++ + ++ + + + G++
Sbjct: 185 QWLLDNYETAEGVSLPRSTLYNHYLRHCQE---HKLDPVNAASFGKLI--RSIFMGLRTR 239
Query: 755 KIEKEWKSKRIIKGLKLKPA 774
++ SK G+++KP
Sbjct: 240 RLGTRGNSKYHYYGIRVKPD 259
>gi|73946688|ref|XP_533540.2| PREDICTED: similar to regulatory factor X3 isoform b isoform 1
[Canis familiaris]
Length = 749
Score = 38.2 bits (87), Expect = 5.8, Method: Composition-based stats.
Identities = 11/80 (13%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
W+ D + E + +L Y + ++ + ++ + + + G++
Sbjct: 185 QWLLDNYETAEGVSLPRSTLYNHYLRHCQE---HKLDPVNAASFGKLI--RSIFMGLRTR 239
Query: 755 KIEKEWKSKRIIKGLKLKPA 774
++ SK G+++KP
Sbjct: 240 RLGTRGNSKYHYYGIRVKPD 259
>gi|73946692|ref|XP_861070.1| PREDICTED: similar to regulatory factor X3 isoform b isoform 3
[Canis familiaris]
Length = 757
Score = 38.2 bits (87), Expect = 5.8, Method: Composition-based stats.
Identities = 11/80 (13%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
W+ D + E + +L Y + ++ + ++ + + + G++
Sbjct: 160 QWLLDNYETAEGVSLPRSTLYNHYLRHCQE---HKLDPVNAASFGKLI--RSIFMGLRTR 214
Query: 755 KIEKEWKSKRIIKGLKLKPA 774
++ SK G+++KP
Sbjct: 215 RLGTRGNSKYHYYGIRVKPD 234
>gi|73946694|ref|XP_861094.1| PREDICTED: similar to regulatory factor X3 isoform b isoform 4
[Canis familiaris]
Length = 724
Score = 38.2 bits (87), Expect = 5.8, Method: Composition-based stats.
Identities = 11/80 (13%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
W+ D + E + +L Y + ++ + ++ + + + G++
Sbjct: 160 QWLLDNYETAEGVSLPRSTLYNHYLRHCQE---HKLDPVNAASFGKLI--RSIFMGLRTR 214
Query: 755 KIEKEWKSKRIIKGLKLKPA 774
++ SK G+++KP
Sbjct: 215 RLGTRGNSKYHYYGIRVKPD 234
>gi|73946690|ref|XP_861042.1| PREDICTED: similar to regulatory factor X3 isoform b isoform 2
[Canis familiaris]
Length = 586
Score = 38.2 bits (87), Expect = 5.8, Method: Composition-based stats.
Identities = 11/80 (13%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
W+ D + E + +L Y + ++ + ++ + + + G++
Sbjct: 160 QWLLDNYETAEGVSLPRSTLYNHYLRHCQE---HKLDPVNAASFGKLI--RSIFMGLRTR 214
Query: 755 KIEKEWKSKRIIKGLKLKPA 774
++ SK G+++KP
Sbjct: 215 RLGTRGNSKYHYYGIRVKPD 234
>gi|34328189|ref|NP_035395.2| transcription factor RFX3 [Mus musculus]
gi|261878533|ref|NP_001159886.1| transcription factor RFX3 [Mus musculus]
gi|32172438|sp|P48381|RFX3_MOUSE RecName: Full=Transcription factor RFX3; AltName: Full=Regulatory
factor X 3
gi|17160843|gb|AAH17598.1| Regulatory factor X, 3 (influences HLA class II expression) [Mus
musculus]
gi|148709706|gb|EDL41652.1| regulatory factor X, 3 (influences HLA class II expression) [Mus
musculus]
Length = 749
Score = 38.2 bits (87), Expect = 5.8, Method: Composition-based stats.
Identities = 11/80 (13%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
W+ D + E + +L Y + ++ + ++ + + + G++
Sbjct: 185 QWLLDNYETAEGVSLPRSTLYNHYLRHCQE---HKLDPVNAASFGKLI--RSIFMGLRTR 239
Query: 755 KIEKEWKSKRIIKGLKLKPA 774
++ SK G+++KP
Sbjct: 240 RLGTRGNSKYHYYGIRVKPD 259
>gi|26334223|dbj|BAC30829.1| unnamed protein product [Mus musculus]
Length = 388
Score = 38.2 bits (87), Expect = 5.8, Method: Composition-based stats.
Identities = 11/80 (13%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
W+ D + E + +L Y + ++ + ++ + + + G++
Sbjct: 160 QWLLDNYETAEGVSLPRSTLYNHYLRHCQE---HKLDPVNAASFGKLI--RSIFMGLRTR 214
Query: 755 KIEKEWKSKRIIKGLKLKPA 774
++ SK G+++KP
Sbjct: 215 RLGTRGNSKYHYYGIRVKPD 234
>gi|19743884|ref|NP_602304.1| transcription factor RFX3 isoform b [Homo sapiens]
gi|32172437|sp|P48380|RFX3_HUMAN RecName: Full=Transcription factor RFX3; AltName: Full=Regulatory
factor X 3
gi|18380934|gb|AAH22191.1| Regulatory factor X, 3 (influences HLA class II expression) [Homo
sapiens]
gi|55959571|emb|CAI13403.1| regulatory factor X, 3 (influences HLA class II expression) [Homo
sapiens]
gi|57162136|emb|CAI40199.1| regulatory factor X, 3 (influences HLA class II expression) [Homo
sapiens]
gi|57209026|emb|CAI41215.1| regulatory factor X, 3 (influences HLA class II expression) [Homo
sapiens]
gi|119579200|gb|EAW58796.1| regulatory factor X, 3 (influences HLA class II expression),
isoform CRA_c [Homo sapiens]
gi|119579202|gb|EAW58798.1| regulatory factor X, 3 (influences HLA class II expression),
isoform CRA_c [Homo sapiens]
gi|261858730|dbj|BAI45887.1| regulatory factor X, 3 [synthetic construct]
Length = 749
Score = 38.2 bits (87), Expect = 5.8, Method: Composition-based stats.
Identities = 11/80 (13%), Positives = 31/80 (38%), Gaps = 5/80 (6%)
Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754
W+ D + E + +L Y + ++ + ++ + + + G++
Sbjct: 185 QWLLDNYETAEGVSLPRSTLYNHYLRHCQE---HKLDPVNAASFGKLI--RSIFMGLRTR 239
Query: 755 KIEKEWKSKRIIKGLKLKPA 774
++ SK G+++KP
Sbjct: 240 RLGTRGNSKYHYYGIRVKPD 259
>gi|312897719|ref|ZP_07757135.1| virulence-associated protein E [Megasphaera micronuciformis F0359]
gi|310621103|gb|EFQ04647.1| virulence-associated protein E [Megasphaera micronuciformis F0359]
Length = 826
Score = 38.2 bits (87), Expect = 5.9, Method: Composition-based stats.
Identities = 30/178 (16%), Positives = 53/178 (29%), Gaps = 18/178 (10%)
Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542
T V A G K + G G+GKSTL+ + Y S
Sbjct: 525 RKSLTAAVARAFEPGCKYDTMPILIGRQGAGKSTLIRTMGK---KWYADGL--STFEGKE 579
Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602
E + G I+ E KQ R YG E P
Sbjct: 580 AAE---------NIQGKWIIEAGEMAGYTRAEENASKQFLSRQVDVFRQAYGRRTQEYPR 630
Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD--ASFAQKLETKYTLEAKKW 658
F N++ F+++ RR+ + + ++ + +++ + ++
Sbjct: 631 RCVFFGSSNQYEFLKDITGN--RRFWPVDIEAQKPTKNVYVNLPGEVDQIWAEAVVRY 686
>gi|256824525|ref|YP_003148485.1| DNA primase/polymerase-like protein [Kytococcus sedentarius DSM
20547]
gi|256687918|gb|ACV05720.1| DNA primase/polymerase-like protein [Kytococcus sedentarius DSM
20547]
Length = 317
Score = 38.2 bits (87), Expect = 6.0, Method: Composition-based stats.
Identities = 26/203 (12%), Positives = 54/203 (26%), Gaps = 33/203 (16%)
Query: 10 AKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKL----PACGFGFVCGVGEQPL 65
A++ G + P G KRP + + E+I P G
Sbjct: 25 ARELAAVGVPVFPCLSGGKRPLTTHGFHDATTDLERITAWWREHPEANLAVPTGAASGV- 83
Query: 66 YAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQK-------------PKILIPFRMNKEG 112
+ R + P +
Sbjct: 84 -----------VVVDVDVHGPVDGYRAFERAHRAGLVSGWWQLLVATPSAGMHAYYPATP 132
Query: 113 IKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEY 172
+++++ ++ + +D G G Y V T + +R + ++ S D +
Sbjct: 133 DREQRSWQAARAGIDFRGDGGYIVVPPSTVSTGG----KSAGYRVRRTNSGASSVLDSDQ 188
Query: 173 LFKFFQEITVPLVKDKKSIIPSK 195
L +F P + + + S
Sbjct: 189 LREFLDPRPTPAGRSGRKVERSA 211
>gi|196012926|ref|XP_002116325.1| hypothetical protein TRIADDRAFT_60303 [Trichoplax adhaerens]
gi|190581280|gb|EDV21358.1| hypothetical protein TRIADDRAFT_60303 [Trichoplax adhaerens]
Length = 495
Score = 38.2 bits (87), Expect = 6.3, Method: Composition-based stats.
Identities = 14/113 (12%), Positives = 37/113 (32%), Gaps = 3/113 (2%)
Query: 306 RFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKED 365
D +A + H+ T +AW W ++K + + +
Sbjct: 241 HLFDKKREAFATKLATKHYRRTIAGRAWVAWHGVVEAKWRQRVEKSCQARAQEVCMALTE 300
Query: 366 VFDLSEEP---EDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIF 415
++ + + ++ R + + +++ A +LEA ++F
Sbjct: 301 EYEQKLAALSRKYEDSRAEIARMQKERQHYEETMKKAFMRGVCALNLEAMTMF 353
>gi|326407519|gb|ADZ64590.1| galactokinase [Lactococcus lactis subsp. lactis CV56]
Length = 399
Score = 38.2 bits (87), Expect = 6.3, Method: Composition-based stats.
Identities = 13/88 (14%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
Query: 344 WSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNK-NSKSPRFWFNTDYRRQNVEENSKA 402
+++ ++ +I+ ++K ++ + D N+ PR + Y + E
Sbjct: 185 FAIGFGEVKKAILLDCNTLKYEMVPVELRDYDIVIMNTNKPRALTESKYNERFAETREAL 244
Query: 403 KSTAQSLEAGSIFSITSDLLDSSSRFLG 430
K L+ S+ ++++ D+++ +G
Sbjct: 245 KRMQTRLDIQSLGELSNEEFDANTDLIG 272
>gi|15673965|ref|NP_268140.1| galactokinase [Lactococcus lactis subsp. lactis Il1403]
gi|281492586|ref|YP_003354566.1| galactokinase [Lactococcus lactis subsp. lactis KF147]
gi|12643843|sp|Q9R7D7|GAL1_LACLA RecName: Full=Galactokinase; AltName: Full=Galactose kinase
gi|12725027|gb|AAK06081.1|AE006428_5 galactokinase [Lactococcus lactis subsp. lactis Il1403]
gi|4206187|gb|AAD11510.1| galactokinase [Lactococcus lactis]
gi|281376250|gb|ADA65741.1| Galactokinase [Lactococcus lactis subsp. lactis KF147]
Length = 399
Score = 38.2 bits (87), Expect = 6.3, Method: Composition-based stats.
Identities = 13/88 (14%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
Query: 344 WSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNK-NSKSPRFWFNTDYRRQNVEENSKA 402
+++ ++ +I+ ++K ++ + D N+ PR + Y + E
Sbjct: 185 FAIGFGEVKKAILLDCNTLKYEMVPVELRDYDIVIMNTNKPRALTESKYNERFAETREAL 244
Query: 403 KSTAQSLEAGSIFSITSDLLDSSSRFLG 430
K L+ S+ ++++ D+++ +G
Sbjct: 245 KRMQTRLDIQSLGELSNEEFDANTDLIG 272
>gi|326933520|ref|XP_003212850.1| PREDICTED: DNA-binding protein RFX5-like [Meleagris gallopavo]
Length = 304
Score = 38.2 bits (87), Expect = 6.5, Method: Composition-based stats.
Identities = 13/91 (14%), Positives = 30/91 (32%), Gaps = 9/91 (9%)
Query: 683 KEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNL 742
E + WI + + + + +Y +Y + N +S +
Sbjct: 88 TAEYMHACN----WIRNHLEEHADTCLPKQDVYDAYRQYCD---NLCCHPLSAANFGKII 140
Query: 743 KQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773
++ IK ++ +SK G++ K
Sbjct: 141 RE--IFPNIKARRLGGRGQSKYCYGGIRRKT 169
>gi|222476075|ref|YP_002564596.1| hypothetical protein Hlac_3174 [Halorubrum lacusprofundi ATCC 49239]
gi|222454446|gb|ACM58710.1| hypothetical protein Hlac_3174 [Halorubrum lacusprofundi ATCC 49239]
Length = 1009
Score = 37.8 bits (86), Expect = 7.2, Method: Composition-based stats.
Identities = 13/84 (15%), Positives = 30/84 (35%), Gaps = 6/84 (7%)
Query: 691 DTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGG 750
D +A+ E +L ++YS + +Q +D + + L +
Sbjct: 926 DGIEAFAAMYIREAEGAQVPKETLFQAYSAWTDQ---HDIEGTNASWFGRKLAN---VVE 979
Query: 751 IKREKIEKEWKSKRIIKGLKLKPA 774
+ +++ + G+ L PA
Sbjct: 980 YENDRVRDGDDLVTVYTGVDLTPA 1003
>gi|224104059|ref|XP_002333987.1| predicted protein [Populus trichocarpa]
gi|222839463|gb|EEE77800.1| predicted protein [Populus trichocarpa]
Length = 494
Score = 37.8 bits (86), Expect = 7.8, Method: Composition-based stats.
Identities = 17/78 (21%), Positives = 33/78 (42%), Gaps = 9/78 (11%)
Query: 492 MALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFG-NQYVINAEASDIMQNRPPEAGKAN 550
A +G +R + G G+GKST+++ + G + Y D+ + +
Sbjct: 233 YAKIGK-AWKRGYLLYGPPGTGKSTMISAMANLLGYDIY-------DLELTTVKDNSELR 284
Query: 551 PSLIRLMGSRIVIISETN 568
LI G I++I + +
Sbjct: 285 KLLIETTGKSIIVIEDID 302
>gi|330467066|ref|YP_004404809.1| bifunctional DNA primase/polymerase [Verrucosispora maris
AB-18-032]
gi|328810037|gb|AEB44209.1| bifunctional DNA primase/polymerase [Verrucosispora maris
AB-18-032]
Length = 304
Score = 37.8 bits (86), Expect = 8.2, Method: Composition-based stats.
Identities = 33/171 (19%), Positives = 56/171 (32%), Gaps = 12/171 (7%)
Query: 50 PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFE--ILHGTPIVRIGQKPKILIPFR 107
P G + D+D ++ +L T V G L +R
Sbjct: 75 PTGQLALRTGAASG-VVVVDVD-PAHGGRDSMNALIADGLLPPTAYVVTGSGGLHLY-YR 131
Query: 108 M--NKEGIKKKKTTESTQGHLDILGCGQYFV-AYNIHPKTKKEYTWTTPPHRFKVEDTPL 164
+ K + +D+ G Y V ++HP+T + Y W P R E P
Sbjct: 132 HPGQPVPCSQGKPGQGLGPGIDVKADGGYVVLPPSVHPRTGRAYRW--APDRAMEEMPPR 189
Query: 165 LSE--EDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAF 213
S + ++ + P + S P+ +W R T+R+ A
Sbjct: 190 WSPPADRPRRHHRWPRPCRPPPARRGASPSPTGSWPRTCKRSPTHRKAPAA 240
>gi|325963608|ref|YP_004241514.1| DNA primase/polymerase-like protein [Arthrobacter
phenanthrenivorans Sphe3]
gi|323469695|gb|ADX73380.1| DNA primase/polymerase-like protein [Arthrobacter
phenanthrenivorans Sphe3]
Length = 310
Score = 37.4 bits (85), Expect = 9.2, Method: Composition-based stats.
Identities = 20/138 (14%), Positives = 39/138 (28%), Gaps = 10/138 (7%)
Query: 9 QAKQAIHNGFKLIPLRLGDKRP----QRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQP 64
A+ G + P + KRP L + + + P G G
Sbjct: 23 AARSLAAAGVPVFPCVVEGKRPLTRRGFLDASSDPEQVAAWWSRTPNANIGIPTGAPSGV 82
Query: 65 LYAFDIDSKDEKTANTFK---DTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTES 121
+ F+ D + +VR P +++++ ++
Sbjct: 83 VVVDVDVHGPHDGRAAFQRATDAGLVDGAGLLVR---TPTGGAHVYFPATPGREQRSWQA 139
Query: 122 TQGHLDILGCGQYFVAYN 139
+D G G Y +A
Sbjct: 140 ATAGVDFRGDGGYIIAPP 157
Database: nr
Posted date: May 22, 2011 12:22 AM
Number of letters in database: 999,999,966
Number of sequences in database: 2,987,313
Database: /data/usr2/db/fasta/nr.01
Posted date: May 22, 2011 12:30 AM
Number of letters in database: 999,999,796
Number of sequences in database: 2,903,041
Database: /data/usr2/db/fasta/nr.02
Posted date: May 22, 2011 12:36 AM
Number of letters in database: 999,999,281
Number of sequences in database: 2,904,016
Database: /data/usr2/db/fasta/nr.03
Posted date: May 22, 2011 12:41 AM
Number of letters in database: 999,999,960
Number of sequences in database: 2,935,328
Database: /data/usr2/db/fasta/nr.04
Posted date: May 22, 2011 12:46 AM
Number of letters in database: 842,794,627
Number of sequences in database: 2,394,679
Lambda K H
0.308 0.130 0.349
Lambda K H
0.267 0.0400 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,799,250,715
Number of Sequences: 14124377
Number of extensions: 570026916
Number of successful extensions: 1859990
Number of sequences better than 10.0: 2398
Number of HSP's better than 10.0 without gapping: 1217
Number of HSP's successfully gapped in prelim test: 1939
Number of HSP's that attempted gapping in prelim test: 1852175
Number of HSP's gapped (non-prelim): 3741
length of query: 789
length of database: 4,842,793,630
effective HSP length: 147
effective length of query: 642
effective length of database: 2,766,510,211
effective search space: 1776099555462
effective search space used: 1776099555462
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.2 bits)
S2: 85 (37.4 bits)