PSIBLAST alignment of GI: 254781225 and protein with PDB id: 1rni

>gi|42543570|pdb|1RNI|A Chain A, Bifunctional Dna PrimasePOLYMERASE DOMAIN OF ORF904 FROM The Archaeal Plasmid Prn1 Length = 216

 Score = 89.6 bits (220), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 36/207 (17%), Positives = 69/207 (33%), Gaps = 26/207 (12%)

Query: 8   EQAKQAIHNGFKLIPLRLGDKRP--QRLGKWEEQLLSSEKIDKLPA-----CGFGFVCGV 60
             AK  + +GF +IP+    K+P  +   K+  ++ S E+  +          +    G 
Sbjct: 6   RYAKWFLEHGFNIIPIDPESKKPVLKEWQKYSHEMPSDEEKQRFLKMIEEGYNYAIPGGQ 65

Query: 61  GEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIP--------FRMNKEG 112
             + L   D +SK++  A   +   E L    +        I I          ++N   
Sbjct: 66  --KGLVILDFESKEKLKAWIGESALEELCRKTLCTNTVHGGIHIYVLSNDIPPHKINPLF 123

Query: 113 IKKKKTTESTQGHLD-ILGCGQYFVAYNIH----PKTKKEYTWTTPPHRFKVEDTPLLSE 167
            +  K     Q +   +LG G      +      P  ++ YT     +     +   +S+
Sbjct: 124 EENGKGIIDLQSYNSYVLGLGSCVNHLHCTTDKCPWKEQNYTTCYTLY----NELKEISK 179

Query: 168 EDVEYLFKFFQEITVPLVKDKKSIIPS 194
            D++ L +F  E    L          
Sbjct: 180 VDLKSLLRFLAEKGKRLGITLSKTAKE 206