BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254781225|ref|YP_003065638.1| P4 family phage/plasmid primase [Candidatus Liberibacter asiaticus str. psy62] (789 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done >gi|254781225|ref|YP_003065638.1| P4 family phage/plasmid primase [Candidatus Liberibacter asiaticus str. psy62] gi|254040902|gb|ACT57698.1| P4 family phage/plasmid primase [Candidatus Liberibacter asiaticus str. psy62] Length = 789 Score = 746 bits (1926), Expect = 0.0, Method: Composition-based stats. Identities = 789/789 (100%), Positives = 789/789 (100%) Query: 1 MPVMQWKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGV 60 MPVMQWKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGV Sbjct: 1 MPVMQWKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGV 60 Query: 61 GEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120 GEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE Sbjct: 61 GEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120 Query: 121 STQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEI 180 STQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEI Sbjct: 121 STQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEI 180 Query: 181 TVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHET 240 TVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHET Sbjct: 181 TVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHET 240 Query: 241 RGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPK 300 RGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPK Sbjct: 241 RGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPK 300 Query: 301 GLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLV 360 GLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLV Sbjct: 301 GLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLV 360 Query: 361 SMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSD 420 SMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSD Sbjct: 361 SMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSD 420 Query: 421 LLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESE 480 LLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESE Sbjct: 421 LLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESE 480 Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ Sbjct: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540 Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES Sbjct: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600 Query: 601 PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFL 660 PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFL Sbjct: 601 PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFL 660 Query: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSE 720 KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSE Sbjct: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSE 720 Query: 721 YREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDD 780 YREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDD Sbjct: 721 YREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDD 780 Query: 781 NSNIIDFKR 789 NSNIIDFKR Sbjct: 781 NSNIIDFKR 789 >gi|317120690|gb|ADV02513.1| phage associated primase [Liberibacter phage SC1] gi|317120834|gb|ADV02655.1| phage associated primase [Candidatus Liberibacter asiaticus] Length = 790 Score = 729 bits (1882), Expect = 0.0, Method: Composition-based stats. Identities = 766/790 (96%), Positives = 774/790 (97%), Gaps = 1/790 (0%) Query: 1 MPVMQWKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGV 60 MP MQWKEQAKQAIHNGFKLIPLRL DKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGV Sbjct: 1 MPGMQWKEQAKQAIHNGFKLIPLRLRDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGV 60 Query: 61 GEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120 GEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE Sbjct: 61 GEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120 Query: 121 STQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEI 180 STQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEI Sbjct: 121 STQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEI 180 Query: 181 TVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHET 240 TVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHET Sbjct: 181 TVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHET 240 Query: 241 RGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPK 300 RGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPK Sbjct: 241 RGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPK 300 Query: 301 GLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLV 360 GLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLV Sbjct: 301 GLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLV 360 Query: 361 SMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSD 420 SMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSD Sbjct: 361 SMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSD 420 Query: 421 LLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESE 480 LLDSSSRFLGEQDGILDLETGQK+KPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESE Sbjct: 421 LLDSSSRFLGEQDGILDLETGQKIKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESE 480 Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ Sbjct: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540 Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600 NRPPEAGKANPSLIRLMG+R+VIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES Sbjct: 541 NRPPEAGKANPSLIRLMGARVVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600 Query: 601 PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFL 660 PASFTPFIV NKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFL Sbjct: 601 PASFTPFIVSNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFL 660 Query: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSE 720 KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSE Sbjct: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSE 720 Query: 721 YREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEK-EWKSKRIIKGLKLKPAFESVD 779 YREQELNYDRKRISTRTV LNLKQKGF G + EK + R+I+GLKLKPAFESVD Sbjct: 721 YREQELNYDRKRISTRTVALNLKQKGFKAGRQWEKPRPNRGRYLRVIEGLKLKPAFESVD 780 Query: 780 DNSNIIDFKR 789 DN+NIIDFKR Sbjct: 781 DNNNIIDFKR 790 >gi|317120732|gb|ADV02554.1| phage associated primase/P4 family phage/plasmid primase [Liberibacter phage SC2] gi|317120793|gb|ADV02614.1| phage associated primase [Candidatus Liberibacter asiaticus] Length = 790 Score = 672 bits (1734), Expect = 0.0, Method: Composition-based stats. Identities = 649/790 (82%), Positives = 700/790 (88%), Gaps = 1/790 (0%) Query: 1 MPVMQWKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGV 60 M MQWKEQAKQAIHNGFKLIPLR DKRP RLGKWEEQLLSSE+IDKLPACGFG VCGV Sbjct: 1 MSGMQWKEQAKQAIHNGFKLIPLRFRDKRPLRLGKWEEQLLSSEEIDKLPACGFGLVCGV 60 Query: 61 GEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120 GEQPLYAFDIDSKDEKT N FKDTFEILHGTPIVRIGQKPKILIPFRM+K+G+KKKKT E Sbjct: 61 GEQPLYAFDIDSKDEKTTNNFKDTFEILHGTPIVRIGQKPKILIPFRMDKDGVKKKKTPE 120 Query: 121 STQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEI 180 S QGHLDILG GQYFVAYNIHP TK+EYTWTTPPHRFK ED PLLS+EDVE K FQ+ Sbjct: 121 SPQGHLDILGYGQYFVAYNIHPITKEEYTWTTPPHRFKAEDLPLLSKEDVECFSKAFQDF 180 Query: 181 TVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHET 240 T PLVK KKSI P K NNNNR YTNREITAFLSCF E+FYNGSHD+WIPV+MAVHHET Sbjct: 181 TTPLVKAKKSIKPVKLGKNNNNRYYTNREITAFLSCFNEDFYNGSHDDWIPVIMAVHHET 240 Query: 241 RGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPK 300 RGS KG++IARRWSKQGSTYDE NFNYKWDTFD EE GD AKKRSTF SLFYHH KLIP Sbjct: 241 RGSDKGQDIARRWSKQGSTYDEANFNYKWDTFDCEENGDPAKKRSTFASLFYHHRKLIPD 300 Query: 301 GLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLV 360 GLL RFSDAYNKA+FS++K GHFLY +D K+WYK+D+ N YIW +T DKI IM+FLV Sbjct: 301 GLLEDRFSDAYNKALFSVFKLGHFLYASDIKSWYKRDETNRYIWRITDDKIAGYIMDFLV 360 Query: 361 SMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSD 420 + K D FDL EE + + K+PR + Y ++N + S +KSTA +LE+ S F ITSD Sbjct: 361 AQKNDSFDLCEELVNEDDTKKNPRALYFKVYDKRNACQYSTSKSTANALESKSHFHITSD 420 Query: 421 LLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESE 480 D++ R++GE+DG+LDLETGQ++ PT+ELYITKSTGTPFVEGEPSQEFLDLVSGYFESE Sbjct: 421 RFDANLRYIGEKDGVLDLETGQRITPTEELYITKSTGTPFVEGEPSQEFLDLVSGYFESE 480 Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540 EVM++FTRCVGMALLGGN+AQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ Sbjct: 481 EVMNFFTRCVGMALLGGNEAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540 Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600 NRPPEAGKANPSLIRLMG+R+VIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES Sbjct: 541 NRPPEAGKANPSLIRLMGARVVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600 Query: 601 PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFL 660 PASFTPFIV NKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFL Sbjct: 601 PASFTPFIVSNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFL 660 Query: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSE 720 KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSE Sbjct: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSE 720 Query: 721 YREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEK-EWKSKRIIKGLKLKPAFESVD 779 YREQELNYDRKRISTRTV LNLKQKGF G + EK + R+I+GLKLKPAFESVD Sbjct: 721 YREQELNYDRKRISTRTVALNLKQKGFKAGRQWEKPRPNRGRYLRVIEGLKLKPAFESVD 780 Query: 780 DNSNIIDFKR 789 DN+NIIDFKR Sbjct: 781 DNNNIIDFKR 790 >gi|41179390|ref|NP_958698.1| Bbp29 [Bordetella phage BPP-1] gi|45569522|ref|NP_996591.1| primase [Bordetella phage BMP-1] gi|45580773|ref|NP_996639.1| primase [Bordetella phage BIP-1] gi|40950129|gb|AAR97695.1| Bbp29 [Bordetella phage BPP-1] Length = 854 Score = 585 bits (1507), Expect = e-164, Method: Composition-based stats. Identities = 191/850 (22%), Positives = 329/850 (38%), Gaps = 126/850 (14%) Query: 4 MQWKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQ 63 ++ + + NG+ +IP++ G KRP L W+ L + + + P G G +CG G Q Sbjct: 3 SDFQTHGRALLGNGYLIIPIKPGHKRPA-LDNWQTARLGAADLTRYPEHGVGVLCGQGAQ 61 Query: 64 PLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE--- 120 P+ A D+D+ D + A F + G R+G PKIL+ +R EG K Sbjct: 62 PVVAIDVDTTDAELAARFVAWCQEHLGATCERVGNAPKILLAYRAESEGWGKATGAWFED 121 Query: 121 --STQGHLDILGCGQYFVAYNIHPKTKKEYTWT---TPPHRFKVEDTPLLSEEDVEYLFK 175 + L++LG GQ FVAY++HP T + Y WT + D P+++E VE + Sbjct: 122 LAGDRHRLEVLGKGQQFVAYHVHPDTGRPYEWTDFFGGLDAMRASDLPVITEAQVEEALQ 181 Query: 176 FFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFY----------NGS 225 F+ + + + S+T + + + A+ G + N Sbjct: 182 VFEAMAEECGLARVTGSKSRTGLTSAPE---DDPLMAYEPPVGIDLAEARRLVAYVDNED 238 Query: 226 HDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEEN-FNYKWDTFDFEEIGD----- 279 +D W+ V M++HHE GS + + WS S Y +WD+F Sbjct: 239 YDTWLKVGMSLHHEFDGSGEALALWDEWSATASNYASSEDVARRWDSFGKSGRNPTTARW 298 Query: 280 -------------TAKKRSTF---TSLFYHHGKLIP-----------------------K 300 A+KR+ +L I Sbjct: 299 LLKIGNQGKRDAVRAEKRTALDDAKALILACADSIDLVNDVARRAGEAAGTDLALRAELA 358 Query: 301 GLLASRFSD----------------------AYNKAMFSIY-----------KKGHFLYT 327 GL+ +RF + +NK + +Y Sbjct: 359 GLIRARFKELTDTTLPVADVRAAMAGGRKVVPFNKQRRQMTEFGNAERMLDHYGDGLMYV 418 Query: 328 ADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWF 387 + W+ W+ + A + KE + L +E + +++ F+ Sbjct: 419 PEIDGWF--------TWTGIYWRRAAGV-ELEHLAKETIRALPDEAKAIESDAERAEFFK 469 Query: 388 -NTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP 446 +R + N S AQS + + + LD + LG +G++DL TG+ + P Sbjct: 470 FCAVSQRAVMVRN--MVSLAQS-DPRVVVGVAD--LDKAPHLLGVGNGVVDLTTGKLLPP 524 Query: 447 TKELYITKSTGTPFVEGEPSQEFLDLVSGY-FESEEVMDYFTRCVGMALLGGNKAQRFIH 505 + +T T T + F V+ F +++ +F R +G +L+ Sbjct: 525 DQAYRVTTITATEYDAAATCPLFEQTVADVFFGDADMIGFFQRLIGYSLMAQPTEDVLAI 584 Query: 506 IRGVGGSGKSTLMNLIKYAFGNQYV-INAEASDIMQNRPPEAGKANPSLIRLMGSRIVII 564 G G +GKST++ I+ G +A+ AG A ++RL G+R V + Sbjct: 585 PYGSGSNGKSTVLGAIRDVLGEHAKMASADTFLSSGAAGATAGSAREDVLRLRGARFVYV 644 Query: 565 SETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWW 624 SE +E E+ IK MTGG+ + AR Y T E ++ F+ N V+ D A W Sbjct: 645 SEPDEGSELREGLIKSMTGGEPLPARGLYSKTTVEVAPTWVAFMPTNHRPIVKGDDHAIW 704 Query: 625 RRYIVIPFDKPIANRDASFAQKLETKYTL-----EAKKWFLKGVKAYISKGLDVDIPEVC 679 RR + +PF + ++D + + + L W ++G AY +GL P Sbjct: 705 RRLLPVPFTRNF-DQDLTLTKDPDRAEKLAAEAAGILAWCVRGALAYQRQGLRP--PGAV 761 Query: 680 LKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVT 739 +A+++ + D W+D+CC++G E + L S+ + + R S +++ Sbjct: 762 RQARDDYKSDMDLLAEWLDECCEVGPAYVESNARLWASWEAFAKARGEL-RFIASAKSLG 820 Query: 740 LNLKQKGFIG 749 L KGF Sbjct: 821 RRLDSKGFSS 830 >gi|315121955|ref|YP_004062444.1| P4 family phage/plasmid primase [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495357|gb|ADR51956.1| P4 family phage/plasmid primase [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 686 Score = 539 bits (1389), Expect = e-151, Method: Composition-based stats. Identities = 511/686 (74%), Positives = 591/686 (86%), Gaps = 4/686 (0%) Query: 108 MNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSE 167 M K GIKKK+T +S QGHLDILG GQYFVAYNIHPKTK+EYTWTTPP FK E+ PLLSE Sbjct: 1 MAKAGIKKKQTPKSQQGHLDILGGGQYFVAYNIHPKTKEEYTWTTPPDAFKAEELPLLSE 60 Query: 168 EDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHD 227 EDVE+LF+FF+E T P+VK KK I K NR+YTNREITAFLSCFGEEF NG+HD Sbjct: 61 EDVEHLFEFFKESTTPVVKAKKEIKSPKEGNTKGNRRYTNREITAFLSCFGEEFTNGTHD 120 Query: 228 EWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTF 287 EWIPVVMA+HHET+GS +GKE+ARRWSK+GS+YDEENFNYKW TFD EE GD+ KKRSTF Sbjct: 121 EWIPVVMAIHHETQGSHEGKELARRWSKRGSSYDEENFNYKWSTFDCEEEGDSEKKRSTF 180 Query: 288 TSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLT 347 S+FYHH KLIP G+L RFSDAYNKAMFS++K G+FLY +DTKAWYKKDK N YIW +T Sbjct: 181 ASIFYHHRKLIPDGILEERFSDAYNKAMFSVFKSGYFLYASDTKAWYKKDKTNRYIWRIT 240 Query: 348 LDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQ 407 DKI IM FL+SMK+D FDL EE E+ + K+PR + Y ++N E S++KSTA Sbjct: 241 DDKIAGYIMEFLISMKKDAFDLCEEIENKDGTKKNPRALYLKAYAKRNACEQSRSKSTAN 300 Query: 408 SLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ 467 ++EA S F I+S++ D++ R++GE+DGILD+ETGQ++ P +ELYITKSTGTPFVEG+PS Sbjct: 301 AIEAKSPFHISSEIFDANLRYIGERDGILDMETGQQITPKEELYITKSTGTPFVEGKPSA 360 Query: 468 EFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 EF++LVS YFES+EVM++FTRCVGMALLGGN+AQRFIHIRGVGGSGKSTLMNLIK+AFGN Sbjct: 361 EFMNLVSNYFESKEVMNFFTRCVGMALLGGNEAQRFIHIRGVGGSGKSTLMNLIKFAFGN 420 Query: 528 QYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCM 587 QYVINAEASD+MQNRPPEAGKANPSLIRLMGSR+VIISETNENDE+NAAKIKQMTGGDCM Sbjct: 421 QYVINAEASDVMQNRPPEAGKANPSLIRLMGSRVVIISETNENDELNAAKIKQMTGGDCM 480 Query: 588 TARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKL 647 TARLNYGNTYSE+ ASFTPFIV NKHLFVRNPDDAWWRRYIVIPFDKPIANRDA+FAQKL Sbjct: 481 TARLNYGNTYSEARASFTPFIVSNKHLFVRNPDDAWWRRYIVIPFDKPIANRDATFAQKL 540 Query: 648 ETKYTLEAKKWFLKGVKAYISKG--LDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE 705 ET+Y LEAKKWF++G+KAYI G LDV +PEVC+ AKEEER+GTDTYQAWIDDCCD+G Sbjct: 541 ETEYALEAKKWFMEGIKAYIRNGRNLDVYVPEVCINAKEEERRGTDTYQAWIDDCCDVGS 600 Query: 706 NLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEK-EWKSKR 764 +LWEES LAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGG + +K K Sbjct: 601 DLWEESRILAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGREWDKSSSDRGKYLS 660 Query: 765 IIKGLKLKPAFESVDDN-SNIIDFKR 789 +IKGLKLKPAFE +++ +N++DFK+ Sbjct: 661 LIKGLKLKPAFEDIENEPNNVLDFKK 686 >gi|291541585|emb|CBL14695.1| phage/plasmid primase, P4 family, C-terminal domain [Ruminococcus bromii L2-63] Length = 774 Score = 465 bits (1197), Expect = e-128, Method: Composition-based stats. Identities = 136/783 (17%), Positives = 260/783 (33%), Gaps = 58/783 (7%) Query: 6 WKEQAKQAIHNGFKLIPLRLGDKR---PQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGE 62 W+ H+G P+ P W + + + K G Sbjct: 29 WQSYPDPKSHSGISKKPINPRTGGFAMPNNSDTWSDFETAVRESAKYS----GIGFMFSN 84 Query: 63 QPLYAFDIDSK--------DEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIK 114 P + D+D + N + L + +I EG Sbjct: 85 SPFFGVDLDDMPNDIQDYQNGGADNIISEFVNTLQSYTEFSQSKTGVHIICKGTLPEG-- 142 Query: 115 KKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLF 174 ++ ++ G ++ G++FV + + Y + L + + Sbjct: 143 -RRKAKNDSGGFEMYENGRFFVVTGDY-CSAYAYINDCTESIKPLHSKYLGKATEPQPKL 200 Query: 175 KFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVM 234 + + + ++ +K + + + S F N W Sbjct: 201 RNIEVNLNTVDDIVRAACNAKNGSLFKALYSGDFSAYSSQSEADMAFCNM-LAFWCGCDT 259 Query: 235 -AVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLF-Y 292 + R S ++ R + G+TY + + + + Sbjct: 260 DKMDSIFRQSGLMRDKWDR-KQSGTTYGIITLQKAV-SGCTQTYNPKQHNDYSISIGEGK 317 Query: 293 HHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWS-LTLDKI 351 + + + A F D N F + Y K WY + + + + ++ Sbjct: 318 AVQAVNEEKMRAYTFDDMGNADRFVDLFGDNVRYCYTEKKWYYYNSMKWCVDNIGVVLRM 377 Query: 352 TASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEA 411 + + + L + ++ N S F + R N + A E Sbjct: 378 ADKSVEAMKAEAR----LYLQADEENGGDMSKAFEKHMKASRSNKSKK------AMLNEV 427 Query: 412 GSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLD 471 + +D L GI++L+ G+ E Y TK T + +L Sbjct: 428 EHHIPVLPAQMDKYRMALNTPSGIINLKNGEVRAHNPEYYFTKITSVDCSQTAECPRWLA 487 Query: 472 LVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530 + F +E++ Y + VG +L G Q + G G +GKST +++I+ FG+ Sbjct: 488 FLDDIFAGDKELIRYIQKAVGYSLTGSTAEQCAFFLYGTGRNGKSTFIDVIRDVFGDYAA 547 Query: 531 INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR 590 + ++ R ++ N + RL G+R+V E NE IN +KQ+TG D +TAR Sbjct: 548 NIQPETIMV--RNSQSSAINSDIARLKGARLVTSVEPNEGVRINEGLLKQLTGDDTVTAR 605 Query: 591 LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLE 648 Y + E F ++ N +R D WRR +IPF+ I D + KL Sbjct: 606 KLYSEEF-EFKPEFKLWMATNHKPIIRGTDTGIWRRIHMIPFNVQIPEDKVDKNLTHKL- 663 Query: 649 TKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLW 708 KW + G + +GL +P L++ E ++ D A+I+D C + Sbjct: 664 KAEMTAIFKWCIDGCILWQREGLK--MPSAVLQSVREYKREMDVISAFIEDRCVL--EGS 719 Query: 709 EESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKG 768 ++ +L +Y+ + Y +S + L ++ + K+ G Sbjct: 720 VQASTLYAAYTSWAGDNNEY---CMSNTKFSTELAKR---------FEKVRGKNYNFFNG 767 Query: 769 LKL 771 + L Sbjct: 768 ISL 770 >gi|148252805|ref|YP_001237390.1| putative phage / plasmid primase P4 [Bradyrhizobium sp. BTAi1] gi|146404978|gb|ABQ33484.1| putative Phage / plasmid primase P4 [Bradyrhizobium sp. BTAi1] Length = 749 Score = 448 bits (1152), Expect = e-123, Method: Composition-based stats. Identities = 141/783 (18%), Positives = 246/783 (31%), Gaps = 62/783 (7%) Query: 8 EQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKL----PACGFGFVCGVGEQ 63 + Q ++PL KRP + +++ + P +G G G Sbjct: 10 DLVHQFAERDLPVLPLLAEQKRPAIKRGVHGATTNKKELKRYFRNNPQANYGVSTG-GTS 68 Query: 64 PLYAFDIDSKDEKTANTFKDTFEILHGTP-IVRIGQKPKILIPFRMNKEGIKKKKTTEST 122 ++ DID + K ++ P V + FR N I+ Sbjct: 69 NIFVLDIDGRAGK--HSLSKLISEHGKLPRTVTVLTGSGEHRYFRGNGTPIRNSSGR--L 124 Query: 123 QGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITV 182 LDI G G Y V + K Y++ V + + Sbjct: 125 GEGLDIRGDGGYVVGPGSIHPSGKVYSFKEGRALDDVA-IAKAPPWLLSLISSDRPHQAT 183 Query: 183 PLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHD-EWIPVVMAV-HHET 240 + + + + LS N + + + + Sbjct: 184 RMQLEVPTNNSRRL---AAYLVAAQDRELERLSRAPNHRRNHCLNRSAFKLGQLLPYRIL 240 Query: 241 RGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPK 300 ++++ + +E + + + Sbjct: 241 DEGGCTRKLSE--VARSIGLEESEIIPTIRSGLSAGSRNPRPLHFLKCQIDNPAVAKNES 298 Query: 301 -------GLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITA 353 L R +D N F+ LYT ++ K Sbjct: 299 QTPELTIELAKLRENDTDNAQRFASRWADRILYTP---------GKGWLVFDGKRWKP-D 348 Query: 354 SIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGS 413 S++ + K ++ E + + D + A+SL Sbjct: 349 SLLECMEFAKITARMIACEAQHLPDDQAKATRRKFADSSLSK-GSLERMIDLAKSL---- 403 Query: 414 IFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLV 473 + LD++ L G +DL TG +TK +F + Sbjct: 404 -VMVDDSRLDANPWLLNTTTGTIDLRTGDCDDHDPRDLLTKMIPVAADPTAKCPQFRKFL 462 Query: 474 SGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRG-VGGSGKSTLMNLIKYAFGNQYVI 531 + +M Y +C G L G + Q F G G +GKSTL+NL++ G+ Sbjct: 463 NRITGGDRALMRYLKKCAGYTLTGSTQEQVFFFCYGKSGSNGKSTLINLLRDMLGDYSRH 522 Query: 532 NAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARL 591 + + + L RL G R+V E N + ++ AK+K MTGG+ +TAR Sbjct: 523 TPTETLLTKQY---DNNIPADLARLAGVRMVTAIEANFDRHLDEAKLKSMTGGEPITARF 579 Query: 592 NYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLET 649 Y E +F ++V N VR D A+WRR VIPFD I +D KL Sbjct: 580 M-RQDYFEFTPAFKLWLVANDMPRVRGTDTAFWRRVRVIPFDVQIPESEKDPELPAKL-R 637 Query: 650 KYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWE 709 W ++G KA+ ++GL P+ A + D + ++ +C + Sbjct: 638 DEFPGVLAWAVRGCKAWQAEGL--AEPQTVKLASGRWLEAADHLKRFVAECLIVDPENRL 695 Query: 710 ESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGL 769 S SL YS + + + ++ + + +L++ KE K GL Sbjct: 696 PSSSLLNRYSNWCSKNGE---QPLTVQKLNASLREA-------HNFTHKESKHGSEWVGL 745 Query: 770 KLK 772 KL+ Sbjct: 746 KLR 748 >gi|281419521|ref|ZP_06250534.1| phage/plasmid primase, P4 family [Clostridium thermocellum JW20] gi|281406812|gb|EFB37077.1| phage/plasmid primase, P4 family [Clostridium thermocellum JW20] Length = 719 Score = 442 bits (1137), Expect = e-122, Method: Composition-based stats. Identities = 145/794 (18%), Positives = 257/794 (32%), Gaps = 112/794 (14%) Query: 8 EQAKQAIHNGFKLIPL-----------------RLGDKRPQRLGKWEEQLLSSEKIDKL- 49 + A + +IPL K P G ++ E+I K Sbjct: 7 DAALKYAEANIPVIPLHWICEDGSCSCKVGSNCDSKGKHPLYTGWYKNSTADVEQIRKWW 66 Query: 50 ---PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPF 106 P G G L D+D ++T + + T L T G + F Sbjct: 67 TKTPYANIGIPTGEKSGWLV-LDVDDGGDETISALEATHGKLPDTVTAVTGSGGR-HYIF 124 Query: 107 RMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLS 166 + + + LD G V + Y W F Sbjct: 125 KYPEG--RSIPNKTKFAPGLDTRSTGGLIVVAPSIHVSGNRYEWIKDHSPFD-RTLAEAP 181 Query: 167 EEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSH 226 E ++ + + +T S E GS Sbjct: 182 EWLLKLMERVEVLLTPFEG-----------------------------SSIAAEIKEGSR 212 Query: 227 DEWIPV---VMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKK 283 + + M V T S +A ++ DE + + KK Sbjct: 213 NSTLTSLAGTMRVRGMTEESIYAALLAENNARCNPPLDEAEVKKIAHSVSRYQPNPPMKK 272 Query: 284 RSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYI 343 +D+ N Y K W + Sbjct: 273 H--------------------YHRTDSGNAERLRDRFGSIIRYCPAFKYW--------LV 304 Query: 344 WSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAK 403 + + + + D+ E + + + +N Sbjct: 305 YDGCCWRKETG--ELMQFAIKTARDMLAEASRIEDEAMRKELVRHAM-QSENAGRLKAMI 361 Query: 404 STAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEG 463 A +LE I D LD+ L ++G+++L+TG+ + +E Y++K + Sbjct: 362 DVASNLEGLVIMP---DELDADIWKLNCKNGVVNLKTGELLPHKREYYMSKICPVEYKPS 418 Query: 464 EPSQEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIK 522 + ++D ++ S+E++ Y + VG +L G Q + G G +GKST +N I Sbjct: 419 SKAPRWMDFLNTITGGSKELVRYLQKAVGSSLSGDISEQALFVLYGTGANGKSTFLNTIS 478 Query: 523 YAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMT 582 G+ + + + + RL G+R+V E NE ++ A IK T Sbjct: 479 ELLGDYARNTPSETFMAKRIEAIGN----DIARLQGARLVTAIEINEGQRLSEALIKSFT 534 Query: 583 GGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RD 640 GGD +TAR YG Y + FTPF+V N +R+ + WRR +IPF I +D Sbjct: 535 GGDRITARFLYGE-YFDFQPQFTPFLVVNHRPVIRDTSHSIWRRIKLIPFTVTIPEDKKD 593 Query: 641 ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDC 700 KL + W ++G + +GL ++P+ +A E R+ DT+ ++I++C Sbjct: 594 KQLPAKL-REELPGILSWAVEGCLLWQKEGL--EMPDEVKEATEGYREEMDTFSSFIEEC 650 Query: 701 CDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEW 760 C + E + S+ +Y + + +Y + + + ++GF Sbjct: 651 CIVEEGRKVSNRSIRYAYETWCRENGDY---PLGQKLFNAKMTERGFA------VKRSGA 701 Query: 761 KSKRIIKGLKLKPA 774 R G+ L Sbjct: 702 NGSRDWHGIGLADE 715 >gi|227528969|ref|ZP_03959018.1| phage primase [Lactobacillus vaginalis ATCC 49540] gi|227351106|gb|EEJ41397.1| phage primase [Lactobacillus vaginalis ATCC 49540] Length = 803 Score = 442 bits (1136), Expect = e-121, Method: Composition-based stats. Identities = 145/805 (18%), Positives = 273/805 (33%), Gaps = 97/805 (12%) Query: 5 QWKEQAKQAIH--NGFKLIPLRLG---DKRPQRLGKWEEQLLSSEKIDKLP-ACGFGFVC 58 QW + + N + IPL D + W + + + IDK P A G F Sbjct: 45 QWGNYHRIWVEKRNKYTKIPLNPWNGEDGKSNDSSTWSDFDTALQAIDKYPQADGLAFYF 104 Query: 59 GVGEQPLYAFDIDSKDEKTAN---------TFKDTFEILHGTPIVRIGQKPKILIPFRMN 109 DID ++ + + L + I + + Sbjct: 105 A---NGYVGLDIDHIADELDKVREGDSDPENYVNKAHQLTKGSYMEISMSGEGIHCI--- 158 Query: 110 KEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEED 169 K +G+ ++ G++F + P + D Sbjct: 159 --FKGKIPGNRRRKGNYEMYQSGRFFALTG-----------------NTLNSQPTIKSLD 199 Query: 170 VEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREI----TAFLSCFGEEFYNGS 225 E + K + T DK P + N + I + + F G Sbjct: 200 HEEMAKLY---THYFGNDKVMPFPQNSPQITTNDLSLDEVISRAERSSSGKRFKMFMEGG 256 Query: 226 HDEWI----PVVMAVHH-----ETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTF---- 272 +++ MA + R ++ I R+ S +D + + Sbjct: 257 WEDFYPSHSEADMAFANDLAFWTGRDFNQMDTIFRQSSLMRPKFDSKRGKTTYGIALLNK 316 Query: 273 ---DFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTAD 329 + ++ + K L + + K + D N F +F Y+ Sbjct: 317 AINETSDVFNPHGKPEFNYDLSFLNNDDSKKKHPQRSWDDMGNAQRFMDMYGDNFKYSYI 376 Query: 330 TKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNT 389 K +Y + + + + + + ++ E + K + Sbjct: 377 DKCFYYYNN--------SYWEPDQTGI-VEKCADNVISNMKNEKIHVAPDVKDEDAKKDW 427 Query: 390 DYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKE 449 + + N K+ + L + D L + G +DL +G ++ Sbjct: 428 EKFLKKSRSNRSKKNMLEEL--KHHIPVLHSQFDKEIMLLNTKSGYVDLNSGVLHDHDRD 485 Query: 450 LYITKSTGTPFVEGEPSQEFLDLVSGYFES-EEVMDYFTRCVGMALLGGNKAQRFIHIRG 508 ++ T + + E+ + F + EE++ Y + VG + G K Q + G Sbjct: 486 KMFSQQTAAEYTDNIDCPEWDKFLHQVFNNNEELIHYIQKAVGYSATGSVKEQVMFILYG 545 Query: 509 VGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN 568 G +GKS +N I G +S +++N AN + RL G+R+VI SE N Sbjct: 546 NGRNGKSVFINTIADILGTYAETMNVSSIMVKNN----NGANSDIARLEGARLVISSEAN 601 Query: 569 ENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYI 628 E ++ +KQ+TGGD + AR YGN + E F ++ N +R D+ WRR + Sbjct: 602 EGSRLDEGLLKQLTGGDKIVARHLYGNEF-EFNPEFKLWMATNHKPLIRGTDEGIWRRIM 660 Query: 629 VIPFDKPIANR--DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEE 686 +IPF I D KL+ W ++G + ++GL+ PE+ KA +E Sbjct: 661 LIPFTVQIPKDKVDKDLKYKLQR-EGTGILNWIVQGAMMWQAEGLNP--PEIVTKASQEY 717 Query: 687 RQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746 + D ++ + C+ G + + L Y E+ + Y + ++ Sbjct: 718 KDEMDVVSYFVSEKCETGSDYKVPAGELFNVYREWANESGEYS------------MPKQK 765 Query: 747 FIGGIKREKIEKEWKSKRIIKGLKL 771 F +K++ K + R GL++ Sbjct: 766 FGREMKKKFEYKRTMNGRYYLGLRI 790 >gi|125974487|ref|YP_001038397.1| P4 family phage/plasmid primase [Clostridium thermocellum ATCC 27405] gi|125714712|gb|ABN53204.1| phage / plasmid primase, P4 family [Clostridium thermocellum ATCC 27405] Length = 717 Score = 442 bits (1135), Expect = e-121, Method: Composition-based stats. Identities = 151/791 (19%), Positives = 261/791 (32%), Gaps = 106/791 (13%) Query: 8 EQAKQAIHNGFKLIPL-----------------RLGDKRPQRLGKWEEQLLSSEKIDKL- 49 + A + +IPL K P G ++ E+I K Sbjct: 5 DAALKYAEANIPVIPLHWICEDGSCSCKVGSNCDSKGKHPLYTGWYKNSTADIEQIKKWW 64 Query: 50 ---PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPF 106 P G G L D+D +T + + T L T G + F Sbjct: 65 TKTPNANIGIPTGEKSGWLV-LDVDDGGNETLSALEATHGKLPDTVTAVTGSGGR-HYVF 122 Query: 107 RMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLS 166 + + + LD G VA + Y W F Sbjct: 123 KYPQG--RSIPNKTKFVPGLDTRSTGGLIVAAPSIHVSGNRYEWIKDHSPFD-----RTP 175 Query: 167 EEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSH 226 E E+L K + V L + S I ++ + N + S G G Sbjct: 176 AEAPEWLLKLMEREEVLLTPFEGSSITAEIMEGSRN--------STLTSLAGTMRARGMT 227 Query: 227 DEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRST 286 +E I + + R + DE + + KK Sbjct: 228 EEGIYAALLAENNARCNPPL--------------DEAEVRNIVHSVSRYQPNPPMKKH-- 271 Query: 287 FTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSL 346 +D+ N Y K W ++ Sbjct: 272 ------------------YHRTDSGNAERLRDRFGSIIRYCPAFKYW--------LVYDG 305 Query: 347 TLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTA 406 + + + D+ E + + + +N A Sbjct: 306 CCWRKETG--ELMQFAIKTARDMLAEASQIEDEATRKELV-HHAMQSENAGRLKAMIDVA 362 Query: 407 QSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPS 466 +LE I D LDS L ++G++DL+TG+ + +E Y++K + + Sbjct: 363 SNLEG---LIIMPDELDSDIWKLNCKNGVVDLKTGELLPHKREYYMSKICPVEYSPESKA 419 Query: 467 QEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF 525 +++ ++ S E++ Y + VG +L G Q + G G +GKST +N I Sbjct: 420 PRWIEFLNTITGGSNELVRYLQKAVGSSLSGDISEQALFVLYGTGANGKSTFLNTISDLL 479 Query: 526 GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGD 585 G+ + + + + RL G+R+V E NE ++ A IK TGGD Sbjct: 480 GDYARNTPSETFMAKRIEAIGN----DIARLQGARLVTAIEINEGQRLSEALIKSFTGGD 535 Query: 586 CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDASF 643 +TAR YG Y + FTPF+V N +R+ + WRR +IPF I +D Sbjct: 536 RITARFLYGE-YFDFQPQFTPFLVVNHRPVIRDTSHSIWRRIKLIPFTVTIPEDKKDKQL 594 Query: 644 AQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDI 703 KL + W ++G + +GL ++P+ +A E R+ DT+ ++I++CC + Sbjct: 595 PAKL-REELPGILSWAVEGCLLWQKEGL--EMPDEVKEATEGYREEMDTFSSFIEECCIV 651 Query: 704 GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSK 763 E + S+ +Y + + +Y + + + ++GF Sbjct: 652 EEGRKVSNRSIRYAYETWCRENGDY---PLGQKLFNAKMTERGFA------VKRSGANGS 702 Query: 764 RIIKGLKLKPA 774 R G+ L Sbjct: 703 RDWHGIGLADE 713 >gi|331701892|ref|YP_004398851.1| phage/plasmid primase, P4 family [Lactobacillus buchneri NRRL B-30929] gi|329129235|gb|AEB73788.1| phage/plasmid primase, P4 family [Lactobacillus buchneri NRRL B-30929] Length = 767 Score = 441 bits (1134), Expect = e-121, Method: Composition-based stats. Identities = 139/788 (17%), Positives = 273/788 (34%), Gaps = 82/788 (10%) Query: 15 HNGFKLIP---LRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDID 71 N + IP L G R W + + + + G F DID Sbjct: 27 RNKYTKIPHNALDGGAGRTNDPSTWTDYQTALKALQTYKMDGLAFYFA---NGYVGLDID 83 Query: 72 SKDEKTANTFKDTFEILHGTPIVRIGQKPKILIP--FRMNKEGIKKKKTTESTQGHLDIL 129 ++ ++ ++ + + + ++ K +G++++ Sbjct: 84 HIGDELEKYAAQDYQQNEVQDVLTMTKSYVEISLSGKGIHAIFKGKIPGDRRRKGNVEMY 143 Query: 130 GCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKK 189 G++F KT Y+ + + E ++ ++K + Sbjct: 144 ESGRFFALTG---KTIGPYS----------DRINTPNSEVMKLIYK------HYFGESNV 184 Query: 190 SIIPSKTWTNNNNRQYTNREITAFLSCFGEEF-------YNGSHDEWIPVVMAVHH---- 238 +P++ N+ A LS G+ F + G + +A + Sbjct: 185 VKLPNQAPIRPNDLSVDEIIKRAELSRTGKRFKMFMHGGWEGFYTSHSEADLAFSNDLAF 244 Query: 239 -ETRGSSKGKEIARRWSKQGSTYDEENFNYKW------DTFDFEEIGDTAKKRSTFTSLF 291 R +K EI R+ S YDE++ + + + ++ Sbjct: 245 WTGRDFNKMDEIFRKSSLMRPKYDEKHGKTTYGVSLLNKSINETRETFNPQQHPLHKYNL 304 Query: 292 YHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKI 351 K L + D N F Y+ K+WY + + ++ Sbjct: 305 KFLQSKPKKKLPPRSWDDTGNADRFIDVFGNLVKYSYVDKSWYFY--------NGSYWEM 356 Query: 352 TASI--MNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSL 409 F+ +++ + K+ W + ++ S Sbjct: 357 DDQGKAAQFVDMTVDNMKNEKLHVAAGVDPEKAKVAWEKFLKKSRSHAAKQAMIS----- 411 Query: 410 EAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF 469 E + D L +G +DL +G + + T + + E+ Sbjct: 412 EVQHRVPVLHGQFDQDKTLLNTVNGYIDLTSGILKDHDIKKMFSHQTSVEYTDKIDCPEW 471 Query: 470 LDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 + ++ F +E++ Y + VG + G K Q + G G +GKS ++ I G Sbjct: 472 DEFLNQIFAGDQELIHYIQKAVGYSATGSIKEQVMFILYGNGRNGKSIFIDTISDILGTY 531 Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588 S +++ AN + RL +R+V SE NE ++ +KQ+TGGD +T Sbjct: 532 AKSMQADSIMVRQNK---SGANSDIARLESARLVTSSEPNEGVRLDEGLVKQLTGGDKVT 588 Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQK 646 AR YG + E F ++ N +R DD WRR ++IPF I + D + K Sbjct: 589 ARYLYGKEF-EFKPQFKLWLATNHKPIIRGTDDGIWRRLMLIPFKVKIPDGQVDKNLKDK 647 Query: 647 LETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGEN 706 L+ ++ W ++G + +GL+ P +A + R+ D ++DDCC++ ++ Sbjct: 648 LKR-ESVGILNWIVEGCLLWQREGLNP--PISVTRASRQYREEMDVISLFVDDCCEVSDS 704 Query: 707 LWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRII 766 + L K Y + + Y +S + + +KQK K+ + R Sbjct: 705 YRAPAGELFKKYQSWAKDNSEYS---MSKQKFSREMKQK---------FEFKKTMTGRFY 752 Query: 767 KGLKLKPA 774 +G+K+K Sbjct: 753 EGIKIKTD 760 >gi|125975329|ref|YP_001039239.1| P4 family phage/plasmid primase [Clostridium thermocellum ATCC 27405] gi|125715554|gb|ABN54046.1| phage / plasmid primase, P4 family [Clostridium thermocellum ATCC 27405] Length = 717 Score = 440 bits (1130), Expect = e-121, Method: Composition-based stats. Identities = 145/791 (18%), Positives = 258/791 (32%), Gaps = 106/791 (13%) Query: 8 EQAKQAIHNGFKLIPL-----------------RLGDKRPQRLGKWEEQLLSSEKIDKL- 49 + A + +IPL K P G ++ E+I K Sbjct: 5 DAALKYAEANIPVIPLHWICEDGSCSCKAGSDCDSKGKHPLYTGWYKNSTTDVEQIKKWW 64 Query: 50 ---PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPF 106 P G G L D+D ++T + + T L T G + F Sbjct: 65 TKTPNANIGIPTGEKSDWLV-LDVDDGGDETLSALEATHGKLPDTVTAVTGSGGR-HYVF 122 Query: 107 RMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLS 166 K + LD+ G + Y W F+ P + Sbjct: 123 IYPKG--RSIPNKTKFAPGLDMRSTGGLIAVAPSIHISGNRYEWLEGHSPFE--RIPAEA 178 Query: 167 EEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSH 226 + L + + + P + N+ S G G Sbjct: 179 PAWLLKLMERVEVLLTPFEGSSIIAEIKEGNRNST-----------LTSLAGTMRARGMT 227 Query: 227 DEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRST 286 +E I + + R + DE + + KK Sbjct: 228 EESIYAALLAENNARCNPPL--------------DEAEVRKIAHSVSRYQPNPPMKKH-- 271 Query: 287 FTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSL 346 +D+ N Y K W ++ Sbjct: 272 ------------------YHRTDSGNAERLRDRFGEIIRYCPAFKYW--------LVYDG 305 Query: 347 TLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTA 406 + + + D+ E + + + +N A Sbjct: 306 CCWRKETG--ELMQFAIKTARDMLAEASRIEDEAARKELVRHAM-QSENAGRLKAMIDVA 362 Query: 407 QSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPS 466 +LE I D +DS L ++G++DL+TG+ + +E Y++K + + Sbjct: 363 SNLEGMVIMP---DEIDSDIWKLNCRNGVVDLKTGELLPHKREYYMSKICPVEYKPSSKA 419 Query: 467 QEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF 525 ++++ ++ S+E++ Y + VG +L G Q + G G +GKST +N I Sbjct: 420 PKWMEFLNTITGGSKELVRYLQKAVGSSLSGDISEQALFVLYGTGANGKSTFLNTISDLL 479 Query: 526 GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGD 585 G+ + + + + RL G+R+V E NE ++ A IK TGGD Sbjct: 480 GDYARNTPSETFMAKRIEAIGN----DIARLQGARLVTAIEINEGQRLSEALIKSFTGGD 535 Query: 586 CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDASF 643 +TAR YG Y + FTPF+V N +R+ + WRR +IPF I +D Sbjct: 536 RITARFLYGE-YFDFQPQFTPFLVVNHRPVIRDTSHSIWRRIKLIPFTVTIPEDKKDKQL 594 Query: 644 AQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDI 703 KL + W ++G + +GL ++P+ KA E R+ DT+ ++I++CC + Sbjct: 595 PAKL-REELPGILSWAVEGCLLWQKEGL--NMPDEVKKATEGYREEMDTFSSFIEECCIV 651 Query: 704 GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSK 763 E + S+ +Y + + +Y + + + ++GF Sbjct: 652 EEGRKVSNRSIRYAYETWCRENGDY---PLGQKLFNAKMTERGFA------VKRSGANGS 702 Query: 764 RIIKGLKLKPA 774 R G+ L Sbjct: 703 RDWHGIGLADE 713 >gi|281419011|ref|ZP_06250029.1| phage/plasmid primase, P4 family [Clostridium thermocellum JW20] gi|281407468|gb|EFB37728.1| phage/plasmid primase, P4 family [Clostridium thermocellum JW20] Length = 719 Score = 437 bits (1123), Expect = e-120, Method: Composition-based stats. Identities = 150/791 (18%), Positives = 260/791 (32%), Gaps = 106/791 (13%) Query: 8 EQAKQAIHNGFKLIPL-----------------RLGDKRPQRLGKWEEQLLSSEKIDKL- 49 + A + +IPL K P G ++ E+I K Sbjct: 7 DAALKYAEANIPVIPLHWICEDGSCSCKVGSNCDSKGKHPLYTGWYKNSTADIEQIKKWW 66 Query: 50 ---PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPF 106 P G G L D+D +T + + T L T G + F Sbjct: 67 TKTPNANIGIPTGEKSGWLV-LDVDDGGNETLSALEATHGKLPDTVTAVTGSGGR-HYVF 124 Query: 107 RMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLS 166 + + + LD G VA + Y W F Sbjct: 125 KYPQG--RSIPNKTKFVPGLDTRSTGGLIVAAPSIHVSGNRYEWIKAHSPFD-----RTP 177 Query: 167 EEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSH 226 E E+L K + V L + S I ++ + N + S G G Sbjct: 178 AEAPEWLLKLMEREEVLLTPFEGSSITAEIMEGSRN--------STLTSLAGTMRARGMT 229 Query: 227 DEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRST 286 +E I + + R + DE + + KK Sbjct: 230 EEGIYAALLAENNARCNPPL--------------DEAEVRNIVHSVSRYQPNPPMKKH-- 273 Query: 287 FTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSL 346 +D+ N Y K W ++ Sbjct: 274 ------------------YHRTDSGNAERLRDRFGSIIRYCPAFKYW--------LVYDG 307 Query: 347 TLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTA 406 + + + D+ E + + + +N A Sbjct: 308 CCWRKETG--ELMQFAIKTARDMLAEASQIEDEATRKELV-HHAMQSENAGRLKAMIDVA 364 Query: 407 QSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPS 466 +LE I D LDS L ++G++DL+TG+ + +E Y++K + + Sbjct: 365 SNLEG---LIIMPDELDSDIWKLNCKNGVVDLKTGELLPHKREYYMSKICPVEYSPESKA 421 Query: 467 QEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF 525 +++ ++ S E++ Y + VG +L G Q + G G +GKST +N I Sbjct: 422 PRWIEFLNTITGGSNELVRYLQKAVGSSLSGDISEQALFVLYGTGANGKSTFLNTISDLL 481 Query: 526 GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGD 585 G+ + + + + RL G+R+V E NE ++ A IK TGGD Sbjct: 482 GDYARNTPSETFMAKRIEAIGN----DIARLQGARLVTAIEINEGQRLSEALIKSFTGGD 537 Query: 586 CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDASF 643 +TAR YG Y + FTPF+V N +R+ + WR +IPF I +D Sbjct: 538 RITARFLYGE-YFDFQPQFTPFLVVNHRPVIRDTSHSIWRHIKLIPFTVTIPEDKKDKQL 596 Query: 644 AQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDI 703 KL + W ++G + +GL ++P+ +A E R+ DT+ ++I++CC + Sbjct: 597 PAKL-REELPGILSWAVEGCFLWQKEGL--EMPDEVKEATEGYREEMDTFSSFIEECCIV 653 Query: 704 GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSK 763 E + S+ +Y + + +Y + + + ++GF Sbjct: 654 EEGRKVSNRSIRYAYETWCRENGDY---PLGQKLFNAKMTERGFA------VKRSGANGS 704 Query: 764 RIIKGLKLKPA 774 R G+ L Sbjct: 705 RDWHGIGLADE 715 >gi|227522313|ref|ZP_03952362.1| primase [Lactobacillus hilgardii ATCC 8290] gi|227090520|gb|EEI25832.1| primase [Lactobacillus hilgardii ATCC 8290] Length = 767 Score = 435 bits (1119), Expect = e-119, Method: Composition-based stats. Identities = 137/788 (17%), Positives = 274/788 (34%), Gaps = 82/788 (10%) Query: 15 HNGFKLIP---LRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDID 71 N + IP L G + W + + + + G F DID Sbjct: 27 RNKYTKIPHNALDGGAGKTNDPSSWTDYQTALKALKTYQMDGLAFYFA---NGYVGLDID 83 Query: 72 SKDEKTANTFKDTFEILHGTPIVRIGQKPKILIP--FRMNKEGIKKKKTTESTQGHLDIL 129 ++ ++ ++ + + + ++ K +G++++ Sbjct: 84 HIGDELERYAAQDYQQNEVQDVLTMTKSYVEISLSGTGIHAIFKGKIPGDRRRKGNVEMY 143 Query: 130 GCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKK 189 G++F +T Y+ + + E ++ ++K ++ Sbjct: 144 ESGRFFALTG---RTVGPYS----------DRINTPNSEVMKLIYK------HYFGENNV 184 Query: 190 SIIPSKTWTNNNNRQYTNREITAFLSCFGEEF-------YNGSHDEWIPVVMAVHH---- 238 +P++ N+ A LS G+ F ++G + +A + Sbjct: 185 VKLPNQAPIRPNDLSVDEIIKRAELSRTGKRFKMFMEGGWDGFYTSQSEADLAFSNDLAF 244 Query: 239 -ETRGSSKGKEIARRWSKQGSTYDEENFNYKW------DTFDFEEIGDTAKKRSTFTSLF 291 R +K +I R+ S YDE++ + + + ++ Sbjct: 245 WTGRDFNKMDQIFRKSSLMRPKYDEKHGKTTYGVSLLNKSINETRETFNPQQHPLHKYNL 304 Query: 292 YHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKI 351 K L + D N F Y+ K+WY + + ++ Sbjct: 305 KFLQSKPKKKLPPRSWDDTGNADRFIDVFGNLVKYSYIDKSWYFY--------NGSYWEM 356 Query: 352 TASI--MNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSL 409 F+ +++ + K+ W + ++ S Sbjct: 357 DDQGKAAQFVDMTVDNMKNEKLHVAAGVDPEKAKVAWEKFLKKSRSHAAKQAMIS----- 411 Query: 410 EAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF 469 E + D L +G +DL +G + + T + + E+ Sbjct: 412 EVQHRVPVLHGQFDQDKTLLNTVNGYIDLTSGILKDHDIKKMFSHQTSVEYTDKIDCPEW 471 Query: 470 LDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 + ++ F +E++ Y + VG + G K Q + G G +GKS ++ I G Sbjct: 472 DEFLNQIFAGDQELIHYIQKAVGYSATGSIKEQVMFILYGNGRNGKSIFIDTISDILGTY 531 Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588 S +++ AN + RL +R+V SE NE ++ +KQ+TGGD +T Sbjct: 532 AKSMQADSIMVRQNK---SGANSDIARLESARLVTSSEPNEGVRLDEGLVKQLTGGDKVT 588 Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQK 646 AR YG + E F ++ N +R DD WRR ++IPF I + D + K Sbjct: 589 ARYLYGKEF-EFKPQFKLWLATNHKPIIRGTDDGIWRRLMLIPFKVKIPDGQVDKNLKDK 647 Query: 647 LETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGEN 706 L+ ++ W ++G + +GL+ P +A + R+ D ++DDCC++ +N Sbjct: 648 LKR-ESVGILNWIVEGSLLWQREGLNP--PISVTRASRQYREEMDVISLFVDDCCEVSDN 704 Query: 707 LWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRII 766 + L K Y + + Y + ++ F IK++ K+ R Sbjct: 705 YRSPAGELFKKYQSWAKDNSEYS------------MSKQKFSREIKQKFEFKKTMKGRFY 752 Query: 767 KGLKLKPA 774 +GLK+K Sbjct: 753 EGLKIKTD 760 >gi|292491152|ref|YP_003526591.1| phage/plasmid primase, P4 family [Nitrosococcus halophilus Nc4] gi|291579747|gb|ADE14204.1| phage/plasmid primase, P4 family [Nitrosococcus halophilus Nc4] Length = 715 Score = 435 bits (1119), Expect = e-119, Method: Composition-based stats. Identities = 146/778 (18%), Positives = 257/778 (33%), Gaps = 99/778 (12%) Query: 8 EQAKQAIHNGFKLIPLRLGDKRPQRLGKWE-----EQLLSSEKIDKLPACGFGFVCGVGE 62 A G++L+P+ K P W + + + + P G G Sbjct: 6 SHAITYAQQGYRLLPVTPNGKVPLLKE-WTKKATRDPAILEDYWRRWPKANIGLATGEDS 64 Query: 63 QPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRI---GQKPKILIPFRMNKEGIKKKKTT 119 + D+D K + E +G + F+ + + Sbjct: 65 -GCFVLDVDVKKGAPGEQSLEELESEYGVLPETLKAKTPSGGFHYFFQHPGGRLGNRA-- 121 Query: 120 ESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQE 179 + + LDI G G Y + + K Y W + +E L + Sbjct: 122 -NFRPGLDIRGDGGYVLVAPSVVE-GKAYNWLNEGTP-----PAEAPDWLLE-LLHEGPK 173 Query: 180 ITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHE 239 TVP + ++ N++ +Y A L G + + A Sbjct: 174 PTVPGGAAQALKGVAEGQRNDSVFRY-----AASLLHRGLRYEEAQ----TLIGKA---- 220 Query: 240 TRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIP 299 + + L +G+ P Sbjct: 221 ----------------------------------AGKCNPPLPEDEALRCLDSAYGRYSP 246 Query: 300 KGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFL 359 ++ N Y ++ +W+ T +I+ Sbjct: 247 T--PQRPLTELGNAERLVDRFGEVVRYLPA--------YHHWLLWNGTHWQISEKG-EIE 295 Query: 360 VSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITS 419 + V + E D ++ + S S A +LE ++ Sbjct: 296 QLVHAVVRGIKVEA-DAETDTTRKENLIKHGRNSERKTAISNMLSLAATLEG---IALAP 351 Query: 420 DLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE- 478 LD+ G ++G++DL TGQ P Y+TK F G + V Sbjct: 352 HQLDADPYAFGVENGVVDLRTGQLRPPNTVDYLTKFGHVGFQPGAQCPRWEHFVLEVMGG 411 Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538 ++++ + R VG L+GGN Q + G G +GKSTL+ +I+ G+ A Sbjct: 412 DKDLVSFLQRAVGATLVGGNSDQVIFILHGGGANGKSTLLRIIQTLMGSYARAAGNA-LF 470 Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598 NR G ++RL +R+V+ SE E + +N +K+MTG D +T R+ YG Sbjct: 471 TVNRFQNQGGPREDIVRLKDARMVLTSELGEGEILNEDLVKRMTGDDTLTGRVPYGKASI 530 Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEAK 656 E FTP++ N +R D A WRR +IPF++ +D + L + Sbjct: 531 EFRPQFTPWMATNHKPIIRGDDHAIWRRVKLIPFEQTFAGKKQDKGLSHAL-LQELPGIL 589 Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAK 716 W ++G A+ GL P+V +A E R D W+++ C G ++ L + Sbjct: 590 NWAIQGCLAWQKGGLTP--PQVVEEATREYRSEMDLLGEWLEERCVQGAEHKAKNADLYQ 647 Query: 717 SYSEY--REQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLK 772 Y ++ + + + + R L KGF + + R +G+ K Sbjct: 648 DYLDWSEAQYGIRGKKHCLDPRVFGRKLAAKGFT--------RIKIQGGRGFQGIACK 697 >gi|281419305|ref|ZP_06250320.1| phage/plasmid primase, P4 family [Clostridium thermocellum JW20] gi|281406925|gb|EFB37188.1| phage/plasmid primase, P4 family [Clostridium thermocellum JW20] Length = 719 Score = 434 bits (1115), Expect = e-119, Method: Composition-based stats. Identities = 145/796 (18%), Positives = 257/796 (32%), Gaps = 106/796 (13%) Query: 3 VMQWKEQAKQAIHNGFKLIPL-----------------RLGDKRPQRLGKWEEQLLSSEK 45 M + A + ++PL K P G ++ E+ Sbjct: 2 KMTMMDAAIKYAEANIPVMPLHWICEDGSCSCKAGSDCDSKGKHPLYTGWYKNSTADMEQ 61 Query: 46 IDKL----PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPK 101 I K P G G L D+D ++T + + T L + + Sbjct: 62 IRKWWTKTPNANIGIPTGEKSGWLV-LDVDDGGDETISALEATHGKL-PDTVTAVTGSGG 119 Query: 102 ILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVED 161 F+ K + LD G V + +Y W F Sbjct: 120 WHYVFKYPKG--RSIPNKTKFASGLDTRSTGGLIVVAPSIHVSGNQYQWLEGHSPFD-RT 176 Query: 162 TPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEF 221 ++ L + + + P + N+ S G Sbjct: 177 PAEAPAWLLK-LMERVEVLLTPFEGSSIIAEIKEGSRNST-----------LTSLAGSMR 224 Query: 222 YNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTA 281 G +E I + ++ R + DE + + Sbjct: 225 ARGMTEESIYAALLAENKARCNPPL--------------DEAEVKKIAHSVSRYQPNPPM 270 Query: 282 KKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNV 341 KK +D+ N Y K W Sbjct: 271 KKH--------------------YHRTDSGNAERLRDRFGSIIRYCPAFKYW-------- 302 Query: 342 YIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSK 401 ++ + + + D+ E + + + +N Sbjct: 303 LVYDGCCWRKETG--ELMQFAIKTARDMLAEASRIEDEAARKELVRHAM-QSENAGRLKA 359 Query: 402 AKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFV 461 A +LE I D LDS L ++G++DL+TG+ + +E Y++K + Sbjct: 360 MIDVASNLEGMVIMP---DELDSDIWKLNCKNGVVDLKTGELLPHKREYYMSKICPVEYK 416 Query: 462 EGEPSQEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNL 520 + ++D ++ S E++ Y + VG +L G Q + G G +GKST +N Sbjct: 417 PSSKAPRWMDFLNTITGGSNELVRYLQKAVGSSLSGDISEQALFVLYGTGANGKSTFLNT 476 Query: 521 IKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQ 580 I G+ + + + + RL G+R+V E NE ++ A IK Sbjct: 477 ISELLGDYTRNTPSETFMAKRIEAIGN----DIARLQGARLVTAIEINEGQRLSEALIKS 532 Query: 581 MTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN-- 638 TGGD +TAR YG Y + FTPF+V N +R+ + WRR +IPF I Sbjct: 533 FTGGDRITARFLYGE-YFDFQPQFTPFLVVNHRPVIRDTSHSIWRRIKLIPFTVTIPEDK 591 Query: 639 RDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID 698 +D KL + W ++G + +GL ++P+ KA E R+ DT+ ++I+ Sbjct: 592 KDKQLPAKL-REELPGILSWAVEGCLLWQKEGL--NMPDEVKKATEGYREEMDTFSSFIE 648 Query: 699 DCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEK 758 +CC + E + S+ +Y + + +Y + + + ++GF Sbjct: 649 ECCIVEEGRKVSNRSIRYAYETWCRENGDY---PLGQKLFNAKMTERGFA------VKRS 699 Query: 759 EWKSKRIIKGLKLKPA 774 R G+ L Sbjct: 700 GANGSRDWHGIGLADE 715 >gi|125975346|ref|YP_001039256.1| P4 family phage/plasmid primase [Clostridium thermocellum ATCC 27405] gi|125715571|gb|ABN54063.1| phage / plasmid primase, P4 family [Clostridium thermocellum ATCC 27405] Length = 717 Score = 433 bits (1112), Expect = e-119, Method: Composition-based stats. Identities = 142/791 (17%), Positives = 257/791 (32%), Gaps = 106/791 (13%) Query: 8 EQAKQAIHNGFKLIPL-----------------RLGDKRPQRLGKWEEQLLSSEKIDKL- 49 + A + ++PL K P G ++ E+I K Sbjct: 5 DAAIKYAEANIPVMPLHWICEDGSCSCKAGSDCDSKGKHPLYTGWYKNSTADMEQIRKWW 64 Query: 50 ---PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPF 106 P G G L D+D ++T + + T+ L + + F Sbjct: 65 TKTPNANIGIPTGEKSDWLV-LDVDDGGDETISALEATYGKL-PDTVTAVTGSGGWHYVF 122 Query: 107 RMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLS 166 + K + LD G V + +Y W F Sbjct: 123 KYPKG--RSIPNKTKFASGLDTRSTGGLIVVAPSIHVSGNQYQWLEGHSPFD-RTPAEAP 179 Query: 167 EEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSH 226 ++ L + + + P + N+ S G G Sbjct: 180 AWLLK-LMERVEVLLTPFEGSSIIAEIKEGSRNST-----------LTSLAGSMRARGMT 227 Query: 227 DEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRST 286 +E I + ++ R + DE + + KK Sbjct: 228 EESIYAALLAENKARCNPPL--------------DEAEVKKIAHSVSRYQPNPPMKKH-- 271 Query: 287 FTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSL 346 +D+ N Y K W ++ Sbjct: 272 ------------------YHRTDSGNAERLRDRFGSIIRYCPAFKYW--------LVYDG 305 Query: 347 TLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTA 406 + + + D+ E + + + +N A Sbjct: 306 CCWRKETG--ELMQFAIKTARDMLAEASRIEDEAARKELVRHAM-QSENAGRLKAMIDVA 362 Query: 407 QSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPS 466 +LE I D LDS L ++G++DL+TG+ + +E Y++K + + Sbjct: 363 SNLEGMVIMP---DELDSDIWKLNCKNGVVDLKTGELLSHKREYYMSKICPVEYKPSSKA 419 Query: 467 QEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF 525 ++D ++ S E++ Y + VG +L G Q + G G +GKST +N + Sbjct: 420 PRWMDFLNTITGGSNELVRYLQKAVGSSLSGDISEQALFVLYGTGANGKSTFLNTVSDLL 479 Query: 526 GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGD 585 G+ + + + + RL G+R+V E NE ++ A IK TGGD Sbjct: 480 GDYARNTPSETFMAKRIEAIGN----DIARLQGARLVTAIEINEGQRLSEALIKSFTGGD 535 Query: 586 CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDASF 643 +TAR YG Y + FTPF+V N +R+ + WRR +IPF I +D Sbjct: 536 RITARFLYGE-YFDFQPQFTPFLVVNHRPVIRDTSHSIWRRIKLIPFTVTIPEDKKDKQL 594 Query: 644 AQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDI 703 KL + W ++G + +GL ++P+ +A + RQ DT+ ++I++CC + Sbjct: 595 PAKL-REELPGILSWAVEGCLIWQKEGL--NMPDEVKEATDGYRQEMDTFSSFIEECCIV 651 Query: 704 GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSK 763 E + S+ +Y + + +Y + + + ++GF Sbjct: 652 EEGRKVSNRSIRYAYETWCRENGDY---PLGQKLFNAKMTERGFA------VKRSGANGS 702 Query: 764 RIIKGLKLKPA 774 R G+ L Sbjct: 703 RDWHGIGLAEE 713 >gi|56963140|ref|YP_174867.1| hypothetical protein ABC1368 [Bacillus clausii KSM-K16] gi|56909379|dbj|BAD63906.1| phage-related protein [Bacillus clausii KSM-K16] Length = 791 Score = 431 bits (1108), Expect = e-118, Method: Composition-based stats. Identities = 132/809 (16%), Positives = 270/809 (33%), Gaps = 67/809 (8%) Query: 5 QWKEQAKQAIHNGFKLIPLRLGDK--RPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGE 62 QW K+ +P + + + W + + +K G GF+ + Sbjct: 17 QWIVWRKETRKGKTTKVPYKADGRHAKANDKQHWTTFENAVKAYEKGEFDGIGFMF-SSD 75 Query: 63 QPLYAFDIDS--KDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120 P D+D +D ++ + + L + + I + + Sbjct: 76 DPFIGIDLDHCIEDGAYSDDARKIVDQLDSYTEL-SPSGDGLHIIVKGKIPLRGPGTGKK 134 Query: 121 STQGHLDILGCGQYFVAYN-IHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQE 179 + + +++ G+YF + T + + + + +E K Sbjct: 135 NVERGIEVYRHGRYFTFTGNVVHSTG---------VQERSDALKDFWQAYMEEKPKKVST 185 Query: 180 ITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHD--------EWIP 231 + P + + S + + +I A + S D W Sbjct: 186 PSPPQQRTRTSDLSERELWEKMFNSKKGADIKALFDGHLINDDHSSSDLALCNHLAFWTD 245 Query: 232 VVMA-VHHETRGSSKGKEIARRW-SKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTS 289 A + R S ++ R + GSTY + + I D ++ Sbjct: 246 ADEAKMDRMFRESGLMRDKWDRQANSDGSTYGQITIRNA-ASQCPSTISDFVPQQREPYQ 304 Query: 290 LFYHHGKLIPKGLLAS--RFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLT 347 +F+ R S+ N Y + + IW Sbjct: 305 VFFPQAGDDEFKSSKPFFRLSELGNAERIVYEHGKDIKYCPERE---------WLIWDGK 355 Query: 348 LDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQ 407 I S + + +E +++ D+ ++ + + S Sbjct: 356 RW-IEDSKKEIESITARTLRAIYKEANQASQDDDKQMAKKLYDWAQKCERRSVRVNSI-- 412 Query: 408 SLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ 467 L+ + S+T++ LD ++G++DL+TG+ + ++ TK + + + Sbjct: 413 -LDMRPMVSVTNEELDKHPYLFNCKNGVIDLKTGELLSHDRKYLFTKISDVEYDKSAKCP 471 Query: 468 EFLDLVSGYFESE------EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLI 521 ++ + F+ + E++ + + +G L G Q+ + G G +GKST +N I Sbjct: 472 NWIKFLESIFQDDQGNVDYELIRFMQKAIGYTLTGDISEQQMFFLFGTGRNGKSTFINTI 531 Query: 522 KYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM 581 + G + I R N + RL +R V E+ E +++ + +KQ+ Sbjct: 532 QRILGAYGKQTNSDTFI---RKKNDSGINNDIARLDKARFVSAVESEEGQQLSESLVKQI 588 Query: 582 TGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR-- 639 TGG+ MTAR + E F F N +R D+ WRR IPF I Sbjct: 589 TGGERMTARFM-RQEFFEFTPEFKVFFTTNHPPVIRGSDEGIWRRICQIPFKVTIPKSQV 647 Query: 640 DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD 699 D QKLE W ++G + +GL + P+ +A + R+ D ++++ Sbjct: 648 DRRLPQKLE-AEMPGILAWAVEGCLLWQKEGL--EHPKSIKQATQAYREDMDILGPFLEE 704 Query: 700 CCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKE 759 C + E E+ + Y ++ + ++ + R L+ +GF + Sbjct: 705 KCIVSEIAEIEAKEIYNEYKDFCFKNGEFE---LKNRAFYRLLESRGFKKKKGAKNK--- 758 Query: 760 WKSKRIIKGLKLKPAFESVDDNSNIIDFK 788 G+ L + + +F Sbjct: 759 ----TFFVGVSLLKKNPDLRVIERVTEFD 783 >gi|313903458|ref|ZP_07836849.1| phage/plasmid primase, P4 family [Thermaerobacter subterraneus DSM 13965] gi|313466279|gb|EFR61802.1| phage/plasmid primase, P4 family [Thermaerobacter subterraneus DSM 13965] Length = 849 Score = 430 bits (1106), Expect = e-118, Method: Composition-based stats. Identities = 144/773 (18%), Positives = 253/773 (32%), Gaps = 82/773 (10%) Query: 9 QAKQAIHNGFKLIPL-----------------RLGD--KRPQRLGK---WEEQLLSSEKI 46 +A + + G+ ++PL K P + ++ + Sbjct: 10 EAVRYLKRGWTIVPLCWPTDGGCGAGHPTCSADPRHIGKAPIKGSTLFRPGQEAEAERFW 69 Query: 47 DKLPACGFGFVCGVGEQPLYAFDIDSKDEKT--ANTFKDTFEILHGTPIVRIGQKPKILI 104 + P G E L DID D D +E V G+ I Sbjct: 70 SEYPKANIGIRL--EESGLIVVDIDDPDAVPPEDRQRFDLYED-----YVSTGR--GKHI 120 Query: 105 PFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPL 164 FR N I K + +I G Y VA ++ KEY W+ P Sbjct: 121 YFRRNDLPIPKAAIDLRKERGWEIRLRG-YVVAPPSRHRSGKEYRWSRGIEVVH----PE 175 Query: 165 LSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNG 224 + + E + ++ + D + + RE+ F + G Sbjct: 176 VPDWIAEIIRAASEQKVQDVNIDWDHLPD--VDISRIPLSIETRELIRFGAPKGAR---- 229 Query: 225 SHDEWIPVVMAVHHETRGS-------SKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEI 277 S W + + + + I+ + ++ + Y+ E Sbjct: 230 SEAIWRVIGDLIRAGCDDATVAAVLMNPEHLISEKIREKAPEQQHKYVEYQIAKMRSEFR 289 Query: 278 GDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKD 337 +K + F+D N + Y + + W D Sbjct: 290 SPASKG----AEWTNMDQSVASAQPAMEHFTDLGNAKRLVRRHGKNLRYCPELEKWLVYD 345 Query: 338 KNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVE 397 + + KE V + +E K + N E Sbjct: 346 GRRWVV---------DKTGEVMRRAKETVQSMYQEAAQIADEDKRKKLVQWAL----NSE 392 Query: 398 ENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTG 457 SK K + + + LD L +G +DL +G+ ++ ITK Sbjct: 393 SASKLKHMVELAQTEPGIPVKPSQLDRDPWLLNCLNGTIDLRSGELRPHRRDDLITKLVP 452 Query: 458 TPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKST 516 + + + + ++ ++++ R VG L G Q + G G +GKST Sbjct: 453 VEYDPDAKAPLWEKFLHRIMNGNQRLIEFLQRAVGYTLTGDTSEQVLFLLYGTGANGKST 512 Query: 517 LMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAA 576 + +++ FG+ ++ + ++ + L RL+G R V +E E + Sbjct: 513 FLEVLRSLFGDYGQQAEFSTFLARD----TERVRNDLARLVGKRFVSAAEAEEGRRWSEV 568 Query: 577 KIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI 636 IKQ+TGGD +TAR Y Y E + ++ N VR D A WRR +IPF I Sbjct: 569 VIKQLTGGDTITARFLYRE-YFEFRPAMKLWLAANHKPRVRGTDYAIWRRLRLIPFTVTI 627 Query: 637 A--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQ 694 RD + KL W ++G ++ +GLD P ++A + R+ D Sbjct: 628 PEGERDRDLSSKLCQ-ELQGILAWAVQGCLKWLDRGLD--APPEVMEATNQYREEQDVIA 684 Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGF 747 +I+ C N + L K+Y ++ E + +S L +KGF Sbjct: 685 QFIEAACVPHPNTRVNATDLYKAYLKWCEDVGE---RPVSLTEFGERLNEKGF 734 >gi|52081928|ref|YP_080719.1| phage-like protein [Bacillus licheniformis ATCC 14580] gi|52787314|ref|YP_093143.1| hypothetical protein BLi03629 [Bacillus licheniformis ATCC 14580] gi|52005139|gb|AAU25081.1| hypothetical phagelike protein [Bacillus licheniformis ATCC 14580] gi|52349816|gb|AAU42450.1| putative protein [Bacillus licheniformis ATCC 14580] Length = 805 Score = 427 bits (1097), Expect = e-117, Method: Composition-based stats. Identities = 140/805 (17%), Positives = 275/805 (34%), Gaps = 88/805 (10%) Query: 5 QWKEQAKQAIHNGFKLIP--LRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGE 62 QW + +P + + W + + G GF+ + Sbjct: 16 QWILWRSEERDGKKTKVPYQIDGSMAQSSNKRTWSTFPTVLKFYNDRDYDGIGFMF-SKD 74 Query: 63 QPLYAFDIDS--KDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120 P DID +D + ++ + + K + I + + Sbjct: 75 DPFIGIDIDHCVEDGVLSPFAEEIVQAISSYTEYSPSGKG-VHIITKGKIPLRGPGTGRK 133 Query: 121 STQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEI 180 + + L++ G+YF + + ++E E K+ ++ Sbjct: 134 NPELGLEVYRHGRYFTFTG---------------NSLGIGAVEERTDELKELFEKYLKDK 178 Query: 181 TVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSH--DEWIPVVMAVHH 238 K S+ +N +N++ R + ++ +NG D+ MA+ + Sbjct: 179 KEESKPSKLPAASSRDMSNLSNKEIWERMFNSKNGKSIQDLFNGHLINDDHSATDMALCN 238 Query: 239 ---------------ETRGSSKGKEIARRW-SKQGSTYDEENFNYKWDTFDFEEIGDTAK 282 R S +E R S G+TY E + + Sbjct: 239 HLAFWTDKDPAKMDSMFRESGLFREKWDRQHSSDGATYGEMTIAAAVYSTHTTISDLLEE 298 Query: 283 KRSTFTSLFYHH--------GKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWY 334 ++ ++ H + I A ++ N Y + Y Sbjct: 299 QQEQPYEIYISHPENSQVEDTEEIIDTPPAFHLTELGNAERIVYYHGKNIRYC------- 351 Query: 335 KKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQ 394 ++ + IW+ + S + + L E + + + D+ ++ Sbjct: 352 --NELDWLIWNGKRWEE-DSKRKIEAITAKTLRALYGEAKATEDKFRKKQL---NDWAKK 405 Query: 395 NVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITK 454 N + + L+ + S+ LDS +G++DL+TG+ + ++L TK Sbjct: 406 CERRNIRMNTI---LDVRPMVSVRKQELDSHKYLFNCDNGVIDLKTGELLPHDRDLLFTK 462 Query: 455 STGTPFVEGEPSQEFLDLVSGYFESE------EVMDYFTRCVGMALLGGNKAQRFIHIRG 508 + + + + F + E++D+ + +G +L G Q + G Sbjct: 463 ISPISYQTDADCPNWKTFLESIFIDDQGTPNYEIIDFMQKAIGYSLTGDTTEQVMFFLFG 522 Query: 509 VGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN 568 G +GKST +N +++ FG+ + I + N + RL G+R V E+ Sbjct: 523 NGRNGKSTFINTVQHLFGDYGRQTNSDTFIKKK---NDSAINNDIARLDGARFVSAVESE 579 Query: 569 ENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYI 628 E +++ + +KQ+TGG+ M+AR Y E F F N V+ D+ WRR Sbjct: 580 EGQQLSESLVKQITGGEKMSARFL-RQEYFEFTPEFKVFFTTNHKPIVKGSDEGIWRRIR 638 Query: 629 VIPFDKPIANR--DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEE 686 +IPF I D QKL +W ++G + +GL PE KA + Sbjct: 639 LIPFTVTIPKEKVDKKLPQKL-AAEMPGILRWAVEGCLKWQKEGLG--EPEAIKKATDGY 695 Query: 687 RQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746 R+ D ++++ C E+ L K Y ++ + + + R L+ +G Sbjct: 696 REDMDILGPFMEERCIQHPKAKVEAKELYKDYKDWCFENDEIE---LKNRAFYRQLEIRG 752 Query: 747 FIGGIKREKIEKEWKSKRIIKGLKL 771 F K + +K G+ L Sbjct: 753 F-------KKYRGNYNKNYFDGIGL 770 >gi|295002752|gb|ADF59173.1| gp60 [Bacillus phage phi105] Length = 806 Score = 422 bits (1085), Expect = e-115, Method: Composition-based stats. Identities = 135/822 (16%), Positives = 273/822 (33%), Gaps = 88/822 (10%) Query: 5 QWKEQAKQAIHNGFKLIP--LRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGE 62 QW + + +P + + W + ++ G GF+ + Sbjct: 16 QWILWRSEERNGKKTKVPYQIDGSLAQSSNKRTWSTFATIMKFFNEQEYDGIGFMF-SKD 74 Query: 63 QPLYAFDIDS--KDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120 P DID D + ++ + + + + I + + Sbjct: 75 DPFIGIDIDHCVNDGVLSPFAQEIIQTISSYTEYSPSGEG-VHIIAKGKLPLRGPGTGRK 133 Query: 121 STQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEI 180 + L++ G+YF + +++ +F + Sbjct: 134 NIDKGLEVYRHGRYFTFTGSSLDVGPVHE----------------RSAEIKTIFDKYLTE 177 Query: 181 TVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSH--DEWIPVVMAVHH 238 P +N +N++ R + ++ +NG D+ MA+ + Sbjct: 178 KDEARPVSTRSQPESDMSNLSNKEIWERMFNSKNGKSIQDLFNGQLVNDDHSSTDMALCN 237 Query: 239 ---------------ETRGSSKGKEIARRW-SKQGSTYDEENFNYKWDTFDFEEIGDTAK 282 R S+ +E R S G+TY E + + Sbjct: 238 HLAFWTDKDASKMDSMFRESNLFREKWDRQHSADGATYGEMTIAAAIYSTGPTISDLMEQ 297 Query: 283 KRSTFTSLF-------YHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYK 335 + + F + I ++ N Y + Y Sbjct: 298 QEKPYEVYFSQPPTAQVEDTEEIIDTPPTFHLTELGNAERIVYYHGKNIRYC-------- 349 Query: 336 KDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQN 395 ++ IW+ + + S + + + E + + + D+ ++ Sbjct: 350 -NELEWLIWNGKMWQE-DSKRKIEAITAQTLRAIYGEAQATEDGYRKKQL---NDWAKKC 404 Query: 396 VEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKS 455 N + + L+A + S+ LDS ++G++DL+TG + ++L TK Sbjct: 405 ERRNIRMNTI---LDARPMVSVRKQELDSHKYLFNCENGVIDLKTGDLLPHDRDLLFTKI 461 Query: 456 TGTPFVEGEPSQEFLDLVSGYFESE------EVMDYFTRCVGMALLGGNKAQRFIHIRGV 509 + + + + + F E E++++ + +G +L G Q + G Sbjct: 462 SPVAYEKDADCPNWKAFMESIFIDEEGNPNYEIIEFLQKAIGYSLTGETTEQVMFFLFGN 521 Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569 G +GKST +N ++ G+ + I + N + RL G+R V E+ E Sbjct: 522 GRNGKSTFINTVQQLLGDYGRQTNSDTFIKKK---NDSSINNDIARLDGARFVSAVESEE 578 Query: 570 NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIV 629 +++ + +KQ+TGG+ M+AR Y E F F N V+ D+ WRR + Sbjct: 579 GQQLSESLVKQITGGEKMSARFL-RQEYFEFTPEFKVFFTTNHKPIVKGSDEGIWRRIRL 637 Query: 630 IPFDKPIANR--DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEER 687 +PF I D QKL +W ++G + +GL PE KA E R Sbjct: 638 VPFTVTIPKEKVDKQLPQKL-AAEMPGILRWAVEGCLMWQKEGL--TEPEDIRKATEGYR 694 Query: 688 QGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGF 747 + D ++++ C + E+ L K Y ++ + + + R L+ +GF Sbjct: 695 EDMDILGPYMEERCILHPTTKVEAKELYKDYKDWCFENDEIE---LKNRAFYRQLEIRGF 751 Query: 748 IGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDNSNIIDFKR 789 K + +K G+ L + N+ + Sbjct: 752 -------KKYRGNYNKNYFDGIGLIKENRDLYKQLNLFKHDQ 786 >gi|9633023|ref|NP_050131.1| putative DNA-polymerase or DNA-primase [Lactobacillus phage phiadh] gi|5730280|emb|CAB52501.1| putative DNA-polymerase or DNA-primase [Lactobacillus phage phiadh] Length = 771 Score = 421 bits (1083), Expect = e-115, Method: Composition-based stats. Identities = 139/790 (17%), Positives = 283/790 (35%), Gaps = 78/790 (9%) Query: 7 KEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDK-LPACGFGFVCGVGEQPL 65 K + ++ + P + W + + +DK A G F Sbjct: 25 KYVPARKKNSKIPINPYDGSAGKSNDPSTWSDFNTALRALDKIERADGLAFYFA---NGY 81 Query: 66 YAFDIDSKDEKTAN-------TFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKT 118 D+D+ + T +TF L + + Q K + K Sbjct: 82 VGLDVDNIGNDLQDFLVGAPETLVETFRKLTKKTYMEVSQSGKGIH-----AVFKGKIPG 136 Query: 119 TESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQ 178 +G+ ++ G++F + L D+++L++F Sbjct: 137 KHRRKGNYEMYEAGRFFALTG---------------NTIGSSQIQSLDNSDMKHLYEFLF 181 Query: 179 EITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIP----VVM 234 + P + + + NR +++ + F +G +++ + Sbjct: 182 GKDKVIDISNYQDKPINDLSIS---EIINRMLSSSRGQRDKLFMSGGWEKFYTSQSEADL 238 Query: 235 AVHH-----ETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTS 289 A + + K I R S + +DE+ + + + + Sbjct: 239 AFANDLAFWTGKNFQKMDTIFRNSSLMRAKWDEKRGATTYGIATLNKANNDTVNTFSTKD 298 Query: 290 -----LFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIW 344 ++ + + K + D F +Y+ + WY + + Sbjct: 299 DEALNVYGFNQESSQKETPPRSWDDMGMAQRFLDMFPHSIIYSMVDETWYVYNGSYWKQD 358 Query: 345 S-LTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAK 403 + ++K ++N L + K + + +E + W + R ++ Sbjct: 359 NQGLIEKAADKVINNLKNEKHVIPEDVDE-------DDYKKAWKKFEKRERSRSSKVNMV 411 Query: 404 STAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEG 463 + E + + + D L G +DL G T+ TG F E Sbjct: 412 N-----EIKHLVPVLHNQWDQEHMLLNTPSGYIDLTNGTLHNHKYNKMFTQETGVDFSEN 466 Query: 464 EPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIK 522 ++ ++ F +E++ + + +G +L G N Q+ + G G +GKS L+N++K Sbjct: 467 VDCPLWIKFLNQTFQNDQELIHFVQKIIGYSLTGSNAEQKMFILYGNGRNGKSVLLNIVK 526 Query: 523 YAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMT 582 Y FG+ A+ IMQ R + A + RL G+R+V+ SE NE D ++ + +KQMT Sbjct: 527 YIFGSYAKT-MNATTIMQKRIGSSQGATSDIARLEGARLVVSSEANEGDRLDESLVKQMT 585 Query: 583 GGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDAS 642 GGD + AR YG + E F F+ N + D+ WRR ++IPF + + Sbjct: 586 GGDTLVARYQYGKDF-EFDPVFKLFMATNHKPKIYGTDEGIWRRLVIIPFTHTVKKENVD 644 Query: 643 FA-QKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCC 701 + ++ KW ++G + S+GL+ P+V A E R+ D +A+ID+CC Sbjct: 645 KKLEDKLKAESMGILKWAIEGAMMWQSEGLNP--PDVIQNAGNEYRKEMDVIEAFIDECC 702 Query: 702 DIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWK 761 ++ + + +Y + + N++ ++ + ++ K Sbjct: 703 VTNDSYKVKLPTYLDAYKNWANETNNWE--GMNNTKFGKEITKR---------FERKRLN 751 Query: 762 SKRIIKGLKL 771 + G+ L Sbjct: 752 TGNYYLGIDL 761 >gi|22855035|ref|NP_690795.1| hypothetical protein phi105_42 [Bacillus phage phi105] gi|4126648|dbj|BAA36668.1| unnamed protein product [Bacteriophage phi-105] Length = 806 Score = 421 bits (1082), Expect = e-115, Method: Composition-based stats. Identities = 135/822 (16%), Positives = 273/822 (33%), Gaps = 88/822 (10%) Query: 5 QWKEQAKQAIHNGFKLIP--LRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGE 62 QW + + +P + + W + ++ G GF+ + Sbjct: 16 QWILWRSEERNGKKTKVPYQIDGSLAQSSNKRTWSTFATIMKFFNEQEYDGIGFMF-SKD 74 Query: 63 QPLYAFDIDS--KDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120 P DID D + ++ + + + + I + + Sbjct: 75 DPFIGIDIDHCVNDGVLSPFAQEIIQTISSYTEYSPSGEG-VHIIAKGKLPLRGPGTGRK 133 Query: 121 STQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEI 180 + L++ G+YF + +++ +F + Sbjct: 134 NIDKGLEVYRHGRYFTFTGSSLDVGPVHE----------------RSAEIKTIFDKYLTE 177 Query: 181 TVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSH--DEWIPVVMAVHH 238 P +N +N++ R + ++ +NG D+ MA+ + Sbjct: 178 KDEARPVSTRSQPESDMSNLSNKEIWERMFNSKNGKSIQDLFNGQLVNDDHSSTDMALCN 237 Query: 239 ---------------ETRGSSKGKEIARRW-SKQGSTYDEENFNYKWDTFDFEEIGDTAK 282 R S+ +E R S G+TY E + + Sbjct: 238 HLAFWTDKDASKMDSMFRESNLFREKWDRQHSADGATYGEMTIAAAIYSTGPTISDLMEQ 297 Query: 283 KRSTFTSLF-------YHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYK 335 + + F + I ++ N Y + Y Sbjct: 298 QEKPYEVYFSQPPTAQVEDTEEIIDTPPTFHLTELGNAERIVYYHGKNIRYC-------- 349 Query: 336 KDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQN 395 ++ IW+ + + S + + + E + + + D+ ++ Sbjct: 350 -NELEWLIWNGKMWQE-DSKRKIEAITAQTLRAIYGEAQATEDGYREKQL---NDWAKKC 404 Query: 396 VEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKS 455 N + + L+A + S+ LDS ++G++DL+TG + ++L TK Sbjct: 405 ERRNIRMNTI---LDARPMVSVRKQELDSHKYLFNCENGVIDLKTGDLLPHDRDLLFTKI 461 Query: 456 TGTPFVEGEPSQEFLDLVSGYFESE------EVMDYFTRCVGMALLGGNKAQRFIHIRGV 509 + + + + + F E E++++ + +G +L G Q + G Sbjct: 462 SPVAYEKDADCPNWKAFMESIFIDEEGNPNYEIIEFLQKAIGYSLTGETTEQVMFFLFGN 521 Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569 G +GKST +N ++ G+ + I + N + RL G+R V E+ E Sbjct: 522 GRNGKSTFINTVQQLLGDYGRQTNSDTFIKKK---NDSSINNDIARLDGARFVSAVESEE 578 Query: 570 NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIV 629 +++ + +KQ+TGG+ M+AR Y E F F N V+ D+ WRR + Sbjct: 579 GQQLSESLVKQITGGEKMSARFL-RQEYFEFTPEFKVFFTTNHKPIVKGSDEGIWRRIRL 637 Query: 630 IPFDKPIANR--DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEER 687 +PF I D QKL +W ++G + +GL PE KA E R Sbjct: 638 VPFTVTIPKEKVDKQLPQKL-AAEMPGILRWAVEGCLMWQKEGL--TEPEDIRKATEGYR 694 Query: 688 QGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGF 747 + D ++++ C + E+ L K Y ++ + + + R L+ +GF Sbjct: 695 EDMDILGPYMEERCILHPTTKVEAKELYKDYKDWCFENDEIE---LKNRAFYRQLEIRGF 751 Query: 748 IGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDNSNIIDFKR 789 K + +K G+ L + N+ + Sbjct: 752 -------KKYRGNYNKNYFDGIGLIKENRDLYKQLNLFKHDQ 786 >gi|291484307|dbj|BAI85382.1| hypothetical protein BSNT_02817 [Bacillus subtilis subsp. natto BEST195] Length = 805 Score = 420 bits (1080), Expect = e-115, Method: Composition-based stats. Identities = 131/797 (16%), Positives = 265/797 (33%), Gaps = 72/797 (9%) Query: 5 QWKEQAKQAIHNGFKLIP--LRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGE 62 QW + + +P + + W + ++ G GF+ + Sbjct: 16 QWILWRSEERNGKKTKVPYQIDGSMAQSSNKRTWSTFATIMKFFNEQEYDGIGFMF-SKD 74 Query: 63 QPLYAFDIDS--KDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120 P DID D + ++ + + + + I + + Sbjct: 75 DPFIGIDIDHCVNDGVLSPFAQEIIQTISSYTEYSPSGEG-VHIIAKGKLPLRGPGTGRK 133 Query: 121 STQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEI 180 + L++ G+YF P + + E+ + ++ + + Sbjct: 134 NIDKGLEVYRHGRYFTFTGNSLDVG--------PVQERSEEIKTIFDKYLTEKEEAKPVS 185 Query: 181 TVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHD--------EWIPV 232 T S + +K + I + + S D W Sbjct: 186 TRTQSASDISNLSNKEIWERMFNSKNGKSIQELFNGQLINGDHSSTDMALCNHLAFWTDK 245 Query: 233 VMA-VHHETRGSSKGKEIARRW-SKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSL 290 + + R S +E + S G+TY E + ++ + Sbjct: 246 DASKMDSMFRESGLFREKWDQQHSADGATYGEMTIAAAIYSTGPTISDLMEQQEQPYEVY 305 Query: 291 FYHHGKL-------IPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYI 343 F I ++ N Y + Y ++ + I Sbjct: 306 FSQPQASHVADTEEIIDTPPVFHLTELGNAERLVYYHGKNIRYC---------NELDWLI 356 Query: 344 WSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAK 403 W+ + + S + + + E + + + D+ ++ N + Sbjct: 357 WNGKMWEE-DSKRQIEALTAQTLRAIYGEAKATEDGYRKKQL---NDWAKKCERRNIRMN 412 Query: 404 STAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEG 463 + L+ + ++ LDS ++G++DL+TG+ + ++ TK + + + Sbjct: 413 TI---LDTRPMVAVRKQDLDSHKYLFNCENGVIDLKTGELLPHDRDFLFTKISSVAYQKD 469 Query: 464 EPSQEFLDLVSGYFESE------EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTL 517 + + F E E++++ + +G +L G Q + G G +GKST Sbjct: 470 ADCPNWKAFLESIFIDEQGQPNYEIINFMQKAIGYSLTGDTTEQVMFFLFGNGRNGKSTF 529 Query: 518 MNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK 577 +N ++ G+ + I + N + RL G+R V E+ E +++ + Sbjct: 530 INTVQQLLGDYGRQTNSDTFIKKK---NDSSINNDIARLDGARFVSAVESEEGQQLSESL 586 Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637 +KQ+TGG+ M+AR Y E F F N V+ D+ WRR ++PF I Sbjct: 587 VKQITGGEKMSARFL-RQEYFEFTPEFKVFFTTNHKPIVKGSDEGIWRRIRLVPFTVTIP 645 Query: 638 NR--DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQA 695 D QKL +W ++G + +GL PEV KA E R+ D Sbjct: 646 KEKVDKKLPQKL-AAEMPGILRWAVEGCLKWQKEGLK--EPEVIRKATEGYREDMDILGP 702 Query: 696 WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755 ++ + C + + E+ L K Y + + + + R ++ +GF K Sbjct: 703 YMSERCVVHPSAKIEAKELYKDYKNWCYENDEIE---LKNRAFYRQIEIRGF-------K 752 Query: 756 IEKEWKSKRIIKGLKLK 772 E K+K G+ L Sbjct: 753 KENGAKNKVFFYGIGLN 769 >gi|262047920|ref|ZP_06020865.1| phage primase [Lactobacillus crispatus MV-3A-US] gi|260571773|gb|EEX28349.1| phage primase [Lactobacillus crispatus MV-3A-US] Length = 776 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 146/786 (18%), Positives = 270/786 (34%), Gaps = 77/786 (9%) Query: 15 HNGFKLIPLRL---GDKRPQRLGKWEEQLLSSEKIDKLP-ACGFGFVCGVGEQPLYAFDI 70 + IP G + W + + + K P A G F D+ Sbjct: 31 REKYTKIPKNPYNFGAGKSNDQRTWSDFETALRALKKYPQADGLAFYFA---NGFVGLDV 87 Query: 71 DSKDEKTAN---------TFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTES 121 D D A+ + F+ L + I Q K L K Sbjct: 88 DHIDSDLADYEEGDTDPNNLVNHFKSLTHNSYMEISQSGKGLHVI-----FKGKIPGKYR 142 Query: 122 TQGHLDILGCGQYFVAYNIHPKT-----------KKEYTWTTPPHRFKVEDTPLLSEEDV 170 G+ ++ G++F Y + + P + + D Sbjct: 143 RHGNYEMYESGRFFALTGNTIGKPVIKSLDESEMTTLYEFCFGKDKVTPLH-PEIDDND- 200 Query: 171 EYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWI 230 E + EI + KS + Q+ N + A ++ + + D Sbjct: 201 ETIDLSVTEIIKRAEESPKSGKRFTLFMQGGWEQFYNTQSEADMAFANDLAFWCGRDI-- 258 Query: 231 PVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSL 290 + R SS ++ R +TY + + + + + + + + Sbjct: 259 ---HKMDQIFRNSSLIRDKWDR-QDGATTYGQRTLQKAIN--ETPNVYNPSSENTGNYIF 312 Query: 291 FYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDK 350 ++ K PK + Y K Y YI++ + Sbjct: 313 SFNEKKQKPKHYTQDDMG--MAQRFIDKYGKNFL---------YSYVDKEWYIYNGSYWS 361 Query: 351 ITASIMNFLVSMKEDVFDLSEEPEDNNKNS-KSPRFWFNTDYRRQNVEENSKAKSTAQSL 409 + + DL+++ + + + + ++ + E S + Sbjct: 362 PDTKGY-IETAADHVIKDLAKDGPVIDPSLPEKDQDRIIKNWNKFVNHERSHKAKVDLTK 420 Query: 410 EAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF 469 E +T + + L G +DL G+ T TG+ + + S + Sbjct: 421 ELQHRLPVTHSMWNQEDMLLNTPSGYVDLTNGKLHPHDISKMFTAETGSEYSDTIDSPNW 480 Query: 470 LDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 + F EEV+ Y + +G + G K Q G G +GKS L++ I+ G Sbjct: 481 RKFLKQIFQNDEEVIHYVQKAIGYSFTGSTKEQVMFIPYGNGRNGKSVLLDTIQDVAGGY 540 Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588 +S + + + AN + RL GSR+VI SE NE ++ +KQ+TGGD + Sbjct: 541 AKTMNVSSIMTK---YNSNGANSDIARLEGSRMVISSEANEGQRLDEGLVKQLTGGDRIV 597 Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQK 646 AR YG + E S+ ++ N +R D+ WRR I+IPF+ + D + K Sbjct: 598 ARQQYGKEF-EYQPSYKIWMATNHKPLIRGTDEGIWRRLILIPFEYQVPKDKIDRNLKYK 656 Query: 647 LETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGEN 706 LE ++ W ++G + +GL IPE A ++ R+ D +++DCC+IG Sbjct: 657 LE-SESMGILNWIVEGAIMWQVEGLQ--IPERIKNASQKYREEMDVLSGFVNDCCEIGPG 713 Query: 707 LWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRII 766 +S L SY + E Y ++ + +K +K+ + Sbjct: 714 FTAKSGELYDSYKNWAEDANEYK---MTLTRFGKEMTKK---------FHKKKSMGVMVY 761 Query: 767 KGLKLK 772 +G+++K Sbjct: 762 EGIRIK 767 >gi|153955845|ref|YP_001396610.1| hypothetical protein CKL_3236 [Clostridium kluyveri DSM 555] gi|219856206|ref|YP_002473328.1| hypothetical protein CKR_2863 [Clostridium kluyveri NBRC 12016] gi|146348703|gb|EDK35239.1| Phage-related protein [Clostridium kluyveri DSM 555] gi|219569930|dbj|BAH07914.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 769 Score = 418 bits (1074), Expect = e-114, Method: Composition-based stats. Identities = 124/796 (15%), Positives = 249/796 (31%), Gaps = 72/796 (9%) Query: 6 WKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPL 65 WK + + P+ +P + G +++ + I G GF+ G + Sbjct: 14 WKYEERSGRKTKVPYNPVTRKRAKPNQRGTFKDFSSAVAAISDY--DGIGFLVG---NDI 68 Query: 66 YAFDIDS---KDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKK-KKTTES 121 D+D K + E G + + I F+ K K + Sbjct: 69 CVIDLDDCFDSSGKLKPIAQSVVEAFSGCYMEHSPSGKGLHIFFKATGYDFDKTKYYINN 128 Query: 122 TQGHLDIL---GCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQ 178 + +++ ++ D P S E L K+ Sbjct: 129 RKLGVEVYVAGATNRFVTVTGNVYANG---------------DIPEKSNELQMILDKYML 173 Query: 179 EITV---PLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMA 235 T + + +S + K+ + A + + S + M Sbjct: 174 RPTPVKQLVDIESQSYLSDKSVIEKAFKSVNGERFKALWQGDTSGYASASEADLALCGML 233 Query: 236 ----------VHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFD--FEEIGDTAKK 283 + R S ++ R + GSTY + ++ G + Sbjct: 234 AFWCGRDIGQMDRLFRKSGLMRDKWNR-PQSGSTYGMITIQKAIASVTEVYKPGGKRSSA 292 Query: 284 RSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYI 343 F Y L + ++D +F+ Y K Y + K W+ + Sbjct: 293 TEDFLQGEYSLANLKTENNERYPWTDIGASRLFADYYKSFARYVPERKMWFCYENG---- 348 Query: 344 WSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAK 403 + + + K L + + + + K Sbjct: 349 ----IWTPDIGNLKVMEMCKSLANQLLTYALTIQDEHQRKAYIDYCRKWQSRRYRETVLK 404 Query: 404 STAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEG 463 +A S++ I+ D + L +G L L + E +TK +G + Sbjct: 405 ------DAQSVYPISMAEFDQDPQVLNCANGTLFLTSMDFHPHNSEDRLTKISGVKYDPE 458 Query: 464 EPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRG-VGGSGKSTLMNLI 521 S+ + + EE + + G ++ G + + + G +GK TL I Sbjct: 459 AKSERWDRFIYEIMSGDEEKAKFLQKAFGYSISGDTRYECLFVLYGATTRNGKGTLCESI 518 Query: 522 KYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM 581 G+ + I + + + + RL G R V ISE + +NAA++K M Sbjct: 519 LKVLGSYGCTARPET-ISLKKNNNSSSPSEDIARLAGVRFVNISEPSRGLVLNAAQVKSM 577 Query: 582 TGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANR 639 TGGD + AR + N++ + F +I N + + R ++IPF++ + + Sbjct: 578 TGGDTINARFLHENSF-DFSPKFKLYINTNYLPVITDMTLFSSGRVVIIPFERHFDESEQ 636 Query: 640 DASFAQKLETKY-TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID 698 D + ++ W ++G + +GL +P+ A E ++ +D + + Sbjct: 637 DKNLKREFAKPKNQSAILNWLIEGYQLLKKEGL--TLPDSVKTATEAYKRDSDKIALFFE 694 Query: 699 DCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEK 758 D + N + + Y + Y R L I ++R++ Sbjct: 695 DALEESPNSEVRTSEVYARYQRWCSANGCYSENA---RNFKQALTA---IARVERKRPRS 748 Query: 759 EWKSKRIIKGLKLKPA 774 ++ G KL Sbjct: 749 GGGMTTMLIGYKLTEE 764 >gi|229008912|ref|ZP_04166266.1| hypothetical protein bmyco0002_56420 [Bacillus mycoides Rock1-4] gi|228752349|gb|EEM02023.1| hypothetical protein bmyco0002_56420 [Bacillus mycoides Rock1-4] Length = 796 Score = 418 bits (1073), Expect = e-114, Method: Composition-based stats. Identities = 152/822 (18%), Positives = 285/822 (34%), Gaps = 93/822 (11%) Query: 6 WKEQAKQAIHNGFKLIP--LRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQ 63 W + + +P + + W + ++ G GF+ + Sbjct: 18 WILWRSEVRNGKKTKVPYQINGEMAQSNNKRSWSTFPTIIKFYEQGGYDGIGFMF-SKDD 76 Query: 64 PLYAFDIDS--KDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTES 121 P DID ++ + +D E ++ I I + ++ Sbjct: 77 PFVGIDIDHCMQEGALTSLAEDIIETVNSYTEY-SPSGDGIHIIAKGKLPLKGPGTGRKN 135 Query: 122 TQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEIT 181 T+ L++ G+YF + VED +EE K+ +E Sbjct: 136 TEIGLEVYRHGRYFTFTG------------DCLDQVPVED---RTEELKVLFDKYLKEKP 180 Query: 182 VPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFY-----NGSHDE-------- 228 P K + + T+ +N + R + ++ + NG H Sbjct: 181 KPERKQSNTSFEREDITSLSNAELWERMFDSKSGGAIKDLFQGILINGDHSSTDMALCNH 240 Query: 229 ---WIPVVMA-VHHETRGSSKGKEIARR-WSKQGSTYDEENFNYKWDTFDFEEIGDTAKK 283 W A + R SS +E + S G TY + + + + Sbjct: 241 LAFWTDKDAAKMDSMFRESSLLREKWDKPHSSDGRTYGQMTIDTAILSTPSTIEDYEPPE 300 Query: 284 RSTFTSLFY------HHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKD 337 + + I + ++ N + Y + Y + Sbjct: 301 EKKYEIYISDDSSVIEDTEEIIDEVPKFHLTELGNAERIAYYHGENIRYC---------N 351 Query: 338 KNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKN--SKSPRFWFNTDYRRQN 395 + IW+ S + + L E + +K W RR Sbjct: 352 ELEWLIWNGKHWHE-DSKRQIEAITAKTLRALYGEAKATEDKYQAKLLHDWAKKCERRS- 409 Query: 396 VEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKS 455 L+ + S+ LDS S +G++DL+TG+ + ++L +TK Sbjct: 410 -------IRINSILDVRPMVSVKKKELDSHSFLFNCDNGVIDLKTGELLPHDRDLLLTKL 462 Query: 456 TGTPFVEGEPSQEFLDLVSGYFE------SEEVMDYFTRCVGMALLGGNKAQRFIHIRGV 509 + + + + + F+ E++ Y + +G +L G K Q + G Sbjct: 463 SPIKYDKNAECPNWKAFLKSIFKTPAGEADHELIHYLQKAIGYSLTGVTKEQVMFFLFGN 522 Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569 G +GKST +N+I+ G+ + + + N + RL G+R V E+ E Sbjct: 523 GRNGKSTFINIIQDLLGDYGRQTNSDTFL---KKRNDSGINNDVARLDGARFVSAVESEE 579 Query: 570 NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIV 629 +++ A +KQ+TGG+ M+AR Y E F F N V+ D+ WRR ++ Sbjct: 580 GQQLSEALVKQITGGEKMSARFL-RQEYFEFTPEFKVFFTTNHKPIVKGSDEGIWRRIML 638 Query: 630 IPFDKPIANRDASFA-QKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQ 688 IPF I + + K +W ++G + ++GL PE A E R+ Sbjct: 639 IPFTVTIKKENIDYDLPDKLAKEMPGILRWAVEGCMKWQAEGLR--APEAVKAATAEYRE 696 Query: 689 GTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFI 748 D +ID+ C + ++ E+ SL ++Y+++ Q + + R L+ +GF Sbjct: 697 DMDILAPFIDENCTVNSSVRIEAKSLYENYTKWCYQNNELE---LKNRAFYRQLEVRGF- 752 Query: 749 GGIKREKIEKEWKSKRIIKGLKLK-----PAFESVDDNSNII 785 K EK +K I G+ L F + D++ N + Sbjct: 753 ------KKEKGTGNKNFILGITLNKLAGSNLFSTKDEDKNNV 788 >gi|184154942|ref|YP_001843282.1| phage primase [Lactobacillus fermentum IFO 3956] gi|183226286|dbj|BAG26802.1| phage primase [Lactobacillus fermentum IFO 3956] gi|299782971|gb|ADJ40969.1| Phage primase [Lactobacillus fermentum CECT 5716] Length = 769 Score = 416 bits (1070), Expect = e-114, Method: Composition-based stats. Identities = 148/800 (18%), Positives = 261/800 (32%), Gaps = 91/800 (11%) Query: 6 WKEQAKQAIHNGFKLIPLRLGDKRP---QRLGKWEEQLLSSEKIDKLP-ACGFGFVCGVG 61 WKE+ + IP+ P W + + +D+ P A G F Sbjct: 22 WKEE-----RGKYTKIPVNPWTGGPGKSNDSSTWADFDTAMRALDQYPDADGLAFYFA-- 74 Query: 62 EQPLYAFDIDSKDEKTA---------NTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEG 112 DID E + L + + + + Sbjct: 75 -NGYVGLDIDHIAEDLERVQCGDTDPDNLVTKAHELTHGSYMEVSMSGEGIHCI-----F 128 Query: 113 IKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEY 172 K +G+ ++ G++F + L + + Sbjct: 129 KGKIPGDRRRKGNYEMYQSGRFFALTG--------------NTLNATPEIKSLDDTAMRR 174 Query: 173 LFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWI-- 230 L+ + KK P+ T + + NR + F G + + Sbjct: 175 LYDHYLHSDKVAEFPKKQ--PAITENTLSIDEIINRAERSTNGARFRAFMKGGWEPFYPS 232 Query: 231 --PVVMAVHHE-----TRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKK 283 MA ++ R I R+ S YDE++ + + + Sbjct: 233 QSEADMAFANDLAFWCGRDFKAMDSIFRQSSLYRKKYDEKHGKTTYGIALLNKAINETSN 292 Query: 284 ------RSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKD 337 K K + D N F +F Y+ K WY Sbjct: 293 VFHPHQPLNVNYDMSFLNKDRDKPKTPRTWDDMGNALRFIDMYGDNFKYSYIDKMWYLY- 351 Query: 338 KNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVE 397 + + +I S M + ++ E + + Sbjct: 352 -------NGSYWQIDQSGM-VEKCADSVIKNMDNEKLNIWPGMDESDATEKWVKFKAKCR 403 Query: 398 ENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTG 457 N KS E + D+ L + G +DL +G + ++ + T Sbjct: 404 SNRSKKSMLD--EVKHHVPVLHSEFDNDLMLLNTESGYVDLNSGLLKEHDRDKMFSHQTA 461 Query: 458 TPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKST 516 + + + E+ + F EEV+ Y + VG + G K Q + + G G +GKS Sbjct: 462 AEYTDTIDAPEWDKFLHQIFNNDEEVIHYIQKAVGYSATGSIKEQVMLLLYGNGRNGKSV 521 Query: 517 LMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAA 576 +N I G+ S ++++ + N + RL G+R+VI SE NE ++ Sbjct: 522 FINTIADILGSYAETMNVESIMVKH----SSGVNSDIARLEGARLVISSEANEGSRLDEG 577 Query: 577 KIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI 636 +KQMTGGD M AR Y + + E F ++ N +R DD WRR ++IPF I Sbjct: 578 LVKQMTGGDKMVARHLYASEF-EFTPQFKLWMATNHKPIIRGTDDGIWRRIMLIPFLVQI 636 Query: 637 ANR--DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQ 694 D KL+ W ++G + ++GL+ PE+ KA +E RQ D + Sbjct: 637 PKDKVDKELKYKLQR-EASGILNWIVQGAMMWQAEGLEP--PEIIKKASDEYRQEMDAIE 693 Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754 +I + C+ G+ + L Y + ++ + ++ F +K + Sbjct: 694 FFISEKCERGDGYMAPAGELYDVYKRWSDESGEH------------QFNKQKFGSEMKAK 741 Query: 755 KIEKEWKSKRIIKGLKLKPA 774 K K R +GLK+ Sbjct: 742 FNYKHTKHGRYYEGLKIITD 761 >gi|196037390|ref|ZP_03104701.1| gp60 [Bacillus cereus NVH0597-99] gi|196031632|gb|EDX70228.1| gp60 [Bacillus cereus NVH0597-99] Length = 795 Score = 416 bits (1069), Expect = e-114, Method: Composition-based stats. Identities = 145/805 (18%), Positives = 273/805 (33%), Gaps = 90/805 (11%) Query: 6 WKEQAKQAIHNGFKLIP--LRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQ 63 W + + +P + + W + ++ G GF+ + Sbjct: 18 WILWRSEVRNGKKTKVPYQINGEMAQSNNKRSWSTFPTIMKFYEQGDYDGIGFMF-SKDD 76 Query: 64 PLYAFDIDS--KDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTES 121 P DID ++ + +D E ++ I I + ++ Sbjct: 77 PFIGIDIDHCIQEGALTSLAEDVIETVNSYTEY-SPSGDGIHIIAKGKLPLKGPGTGRKN 135 Query: 122 TQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEIT 181 L++ G+YF + VED ++++ LF+ + + Sbjct: 136 VDLGLEVYRHGRYFTFTG------------DCLDQVPVED----RTDELKVLFEKYLKEK 179 Query: 182 VPLVKDKKSIIPSKTWTNNNNRQY------TNREITAFLSCFGEEFYNGSHDE------- 228 K + + + + + ++ + F NG H Sbjct: 180 PKPEKKQSTTSFEREDITSLSNAELWERMFDSKSGASIKDLFQGMLINGDHSSTDMALCN 239 Query: 229 ----WIPVVMA-VHHETRGSSKGKEIARR-WSKQGSTYDEENFNYKWDTFDFEEIGDTAK 282 W A + R SS +E + S G TY + + + Sbjct: 240 HLAFWTDKDAAKMDSMFRESSLLREKWDKPHSSDGRTYGQMTIDTAILSTPSTIADYEPP 299 Query: 283 KRSTFTSLFYHHG----KLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDK 338 + + + + I ++ N + Y + Y ++ Sbjct: 300 EEKKYEVYISDNSIEDTEEIIDEAPKFHLTELGNAERIAYYHGENVRYC---------NE 350 Query: 339 NNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKN--SKSPRFWFNTDYRRQNV 396 IW+ S + + + E + SK W RR Sbjct: 351 LEWLIWNGKHWHE-DSKRQIEAITAKTLRAIYGEAKATEDKYQSKLLHDWAKKCERRS-- 407 Query: 397 EENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKST 456 L+ + S+ LD+ + +G++DL+TG+ + ++L +TK + Sbjct: 408 ------IRINSILDVRPMVSVKKKELDAHNFLFNCDNGVIDLKTGELLPHDRDLLLTKLS 461 Query: 457 GTPFVEGEPSQEFLDLVSGYF------ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVG 510 + + + + F E+++Y + +G +L G K Q + G G Sbjct: 462 PIKYDKNADCPNWKAFMESIFKTPAGEPDPELINYLQKAIGYSLTGVTKEQVMFFLFGNG 521 Query: 511 GSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN 570 +GKST +N+I+ G+ + + + N + RL G+R V E+ E Sbjct: 522 RNGKSTFINIIQDLLGDYGRQTNSDTFL---KKRNDSGINNDVARLDGARFVSAVESEEG 578 Query: 571 DEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVI 630 +++ A +KQ+TGG+ M+AR Y E F F N V+ D+ WRR ++I Sbjct: 579 QQLSEALVKQITGGEKMSARFL-RQEYFEFTPEFKVFFTTNHKPIVKGSDEGIWRRIMLI 637 Query: 631 PFDKPIANR--DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQ 688 PF I D KL K +W ++G + ++GL PE A E R+ Sbjct: 638 PFTVTIPKDKIDYDLPDKL-AKEMPGVLRWAVEGCMKWQAEGLR--APEAVKAATAEYRE 694 Query: 689 GTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFI 748 D +ID+ C + E+ L ++Y+++ Q D + R L+ +GF Sbjct: 695 DMDILAPFIDENCTVHPTERIEAKLLYENYTKWCYQNNELD---LKNRAFYRQLEIRGF- 750 Query: 749 GGIKREKIEKEWKSKRIIKGLKLKP 773 K EK K+K I G+ L Sbjct: 751 ------KKEKGSKNKTFIMGMTLNS 769 >gi|227534633|ref|ZP_03964682.1| primase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227187734|gb|EEI67801.1| primase [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 765 Score = 413 bits (1060), Expect = e-113, Method: Composition-based stats. Identities = 134/786 (17%), Positives = 269/786 (34%), Gaps = 80/786 (10%) Query: 15 HNGFKLIPLRL--GDKRPQ-RLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDID 71 N + IP G K +W + + G GF D+D Sbjct: 26 KNKYTKIPYSALTGTKTSSTDSKQWVTFEEAITALQAYDLDGLGFFFA---NGYVGIDVD 82 Query: 72 SKDEKTANTFK---------DTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTEST 122 + + + + +I + T Sbjct: 83 HIGDDLERLEEGQTDDNVAWEFMNTFKSYTERSMSGTGIHIIV-------KGEIPGTRRR 135 Query: 123 QGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITV 182 + ++++ G++F ++ P + + K+ + TV Sbjct: 136 KANVEMYQSGRFFAMTG---DEIGKFHSINSPAEEEFKRI----------YTKYLEPKTV 182 Query: 183 PLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHH---- 238 + + +++P+ + + + + + + +A + Sbjct: 183 IDLPSRYNLVPNNLSEDEIIIKMLRSKSGDRIKKLLNGGWEPLYPSQSEADLAFANDLAF 242 Query: 239 -ETRGSSKGKEIARRWSKQGSTYDEENFNYKW------DTFDFEEIGDTAKKRSTFTSLF 291 R ++ I R S +DE++ + + K L Sbjct: 243 WTGRDFTRMDSIFRHSSLMRPKWDEKHGKTTYGVSTLNRAINDVSDTYQPKHEKPKYKLG 302 Query: 292 YHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKI 351 + PK + D N F Y+ KAWY I++ + ++ Sbjct: 303 FITDTGKPKAFPPRSWDDTGNADRFVDRYGDVARYSYIDKAWY--------IYNGSFWEL 354 Query: 352 TASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEA 411 + + E V DL +E + + + N ++ E Sbjct: 355 DKRGL-LRTMIDEVVADLKKEKPKTPPDVDPEKAEKEWAKFCKTSRGNRAKRAL--EDEI 411 Query: 412 GSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLD 471 +T+D D+ + +G +DL G + + +K + + + E+ Sbjct: 412 QHRLPVTTDEFDADQTLMNVDNGYIDLSDGTLHEHDIKKMFSKKSNVEYSDTVECPEWQA 471 Query: 472 LVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530 ++ F E++DY + VG +L G + Q + G G +GKS M+ +K+ G+ Sbjct: 472 FLNQTFNGDNELIDYIQKAVGYSLTGSVEEQVMFILYGSGRNGKSVFMDTLKHIAGSYSR 531 Query: 531 INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR 590 S ++Q +G AN + RL G+R+V SE NE ++ IK++TGG+ +TAR Sbjct: 532 TMQAKSIMVQQ---SSGGANSDIARLKGARLVSASEPNEGVRLDEGLIKELTGGESVTAR 588 Query: 591 LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLE 648 YG+ + E F ++ N +R DD WRR ++IPF + D KLE Sbjct: 589 FLYGSEF-EFKPEFKLWLSTNHKPIIRGTDDGIWRRLMLIPFTHQVPVDQVDKRLTYKLE 647 Query: 649 TKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLW 708 ++ W + G + +GL+ P+ A E R D + +I+DCC+ G Sbjct: 648 R-ESIGILNWAVDGALKWQREGLEP--PQSVKDASNEYRTEMDVLELFINDCCEKGPGYQ 704 Query: 709 EESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKG 768 + L ++Y ++ ++ Y + + ++ +K +K + G Sbjct: 705 AAAGQLYQTYVDWCDKSGEYK---MRKQKFGAEMQ----------KKFDKHKRGSFFYLG 751 Query: 769 LKLKPA 774 +++K Sbjct: 752 IRIKSD 757 >gi|229016445|ref|ZP_04173387.1| hypothetical protein bcere0030_10200 [Bacillus cereus AH1273] gi|228744853|gb|EEL94913.1| hypothetical protein bcere0030_10200 [Bacillus cereus AH1273] Length = 795 Score = 411 bits (1056), Expect = e-112, Method: Composition-based stats. Identities = 154/828 (18%), Positives = 281/828 (33%), Gaps = 97/828 (11%) Query: 6 WKEQAKQAIHNGFKLIP--LRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQ 63 W + + +P + + W + ++ G GF+ + Sbjct: 18 WILWRSEVRNGKKTKVPYQINGEMAQSNNKRSWSTFPTIIKFYEQGDYDGIGFMF-SKDD 76 Query: 64 PLYAFDIDS--KDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTES 121 P DID ++ + +D E ++ I I + ++ Sbjct: 77 PFIGIDIDHCIQEGALTSIAEDVIETVNSYTEY-SPSGDGIHIIAKGKLPLKGPGTGRKN 135 Query: 122 TQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEIT 181 L++ G+YF + VED ++++ LF+ + + Sbjct: 136 VDIGLEVYRHGRYFTFTG------------DCLDQVPVED----RTDELKVLFEKYLKEK 179 Query: 182 VPLVKDKKSIIPSKTWTNNNNRQY------TNREITAFLSCFGEEFYNGSHDE------- 228 K + + + + + ++ A F NG H Sbjct: 180 PKPEKKQSTTSFEREDITSLSNAELWERMFDSKSGAAIKDLFQGMLINGDHSSTDMALCN 239 Query: 229 ----WIPVVMA-VHHETRGSSKGKEIARR-WSKQGSTYDEENFNYKWDTFDFEEIGDTAK 282 W A + R SS +E + S G TY E + + Sbjct: 240 HLAFWTDKDSAKMDSMFRESSLLREKWDKPHSSDGRTYGEMTIDTAILSTPSTIADYEPP 299 Query: 283 KRSTFTSLFYHHG----KLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDK 338 + + + + I ++ N + Y + Y ++ Sbjct: 300 EEKKYEVYISDNSIEDTEEIIDEAPKFHLTELGNAERIAYYHGDNVRYC---------NE 350 Query: 339 NNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKN--SKSPRFWFNTDYRRQNV 396 IW+ S + + + E + SK W RR Sbjct: 351 LEWLIWNGKHWHE-DSKRQIEAITAKTLRAIYGEAKATEDKYQSKLLHDWAKKCERRS-- 407 Query: 397 EENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKST 456 L+ + S+ LDS S +G++DL+TG+ + ++L +TK + Sbjct: 408 ------IRINSILDVKPMVSVRKKELDSHSFLFNCDNGVIDLKTGELLPHDRDLLLTKLS 461 Query: 457 GTPFVEGEPSQEFLDLVSGYF------ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVG 510 + + + + F E+++Y + +G +L G K Q + G G Sbjct: 462 PIKYDKNAECPNWKSFMESIFKTPAGEPDHELINYLQKAIGYSLTGVTKEQVMFFLFGNG 521 Query: 511 GSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN 570 +GKST +N+I+ G+ + + + N + RL G+R V E+ E Sbjct: 522 RNGKSTFINIIQDLLGDYGRQTNSDTFL---KKRNDSGINNDVARLDGARFVSAVESEEG 578 Query: 571 DEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVI 630 +++ A +KQ+TGG+ M+AR Y E F F N V+ D+ WRR ++I Sbjct: 579 QQLSEALVKQITGGEKMSARFL-RQEYFEFTPEFKVFFTTNHKPIVKGSDEGIWRRIMLI 637 Query: 631 PFDKPIANR--DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQ 688 PF I D KL K +W ++G + ++GL PE A E R+ Sbjct: 638 PFTVTIPKDKIDYDLPDKL-AKEMPGVLRWAVEGCMKWQTEGLR--APEAVKAATAEYRE 694 Query: 689 GTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFI 748 D +ID+ C + E+ L ++Y+++ Q D + R L+ +GF Sbjct: 695 DMDILGPFIDENCAVYSTARVEAKLLYENYTKWCYQNNEMD---LKNRAFYRQLEIRGF- 750 Query: 749 GGIKREKIEKEWKSKRIIKGLKLKP-------AFESVDDNSNIIDFKR 789 K EK K+K I G+ L + E ++ NI KR Sbjct: 751 ------KKEKGSKNKTFIHGMTLNEFAGASLFSGEEKEEKDNITPIKR 792 >gi|22296557|ref|NP_680517.1| putative primase [Lactobacillus phage A2] gi|6599326|emb|CAB63672.1| putative primase [Lactobacillus phage A2] Length = 770 Score = 408 bits (1048), Expect = e-111, Method: Composition-based stats. Identities = 141/786 (17%), Positives = 260/786 (33%), Gaps = 76/786 (9%) Query: 15 HNGFKLIP---LRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDID 71 + + IP + W + + + + G GF D+D Sbjct: 26 KHKYTKIPWSAVTGKRASSTNPDDWTTFDNALQYLKQSDFAGLGFFF---VDGYVGIDVD 82 Query: 72 SKDEKTANTFKDTFEILHG--------TPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQ 123 + + I I R K + + Sbjct: 83 HIGPDLDRLENGDKQDNMAFEFLDAMKSYAETSLSGEGIHIIIR------GKLPGSRHRK 136 Query: 124 GHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITV- 182 ++++ G++F Y+ P ++ E L + Sbjct: 137 KNVEMYESGRFFAMTGNKI---GPYSGINKPDPPALKKLYEKYIEPKSVLKMPMRTDDRF 193 Query: 183 -----------PLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIP 231 + + K+ + ++ + A L+ + + D Sbjct: 194 AVNNLSEDEIIAKMLNSKTGDRIRLLLVGGWEKFYTSQSEADLALANDLAFWTGRDF--- 250 Query: 232 VVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLF 291 + RGSS + +TY N + + + + + L Sbjct: 251 --SKMDSIFRGSSLMRPKWDE-KHGKTTYGVATLNKAINETSNVYHPERERMKYDLSGLM 307 Query: 292 YHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKI 351 K K + D N F + Y+ KAWY +++ + ++ Sbjct: 308 GESKKPKKKLPPR-SWDDTGNAQRFVDHFGDAARYSYVDKAWY--------VYNGSYWEL 358 Query: 352 TASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEA 411 + V D+ E + NS K+ + L Sbjct: 359 DKQG-KLGSMVDIVVDDMKREKIVIADGMDPEEAKKKWSKFLKQSRSNSAKKAMTEQL-- 415 Query: 412 GSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLD 471 ++ + D L +G +DL G+ + +K TG + + S E+ Sbjct: 416 RHRLAVMPEEFDRDKILLNTINGYVDLSDGELHDHDVKKMFSKETGVEYTDTVDSPEWRQ 475 Query: 472 LVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530 + F+ EE++DY + +G +L G + Q + G G +GKS M+ +K+ G+ Sbjct: 476 FLDQIFDHDEELIDYLQKAIGYSLTGSTEEQVMFILYGNGRNGKSVFMDTLKHVAGSYAK 535 Query: 531 INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR 590 + S +++ AN + RL G+R+V SE NE ++ +K++TGGD +TAR Sbjct: 536 SMSAKSIMIKQ---SDSAANSDIARLKGARLVTASEPNEGVRLDEGLVKELTGGDMVTAR 592 Query: 591 LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLE 648 YG+ + E F ++ N +R DD WRR ++IPF+ I D A KLE Sbjct: 593 FLYGSEF-EYKPEFKLWLATNHKPIIRGTDDGIWRRLMLIPFNVQIPENKVDKRLAYKLE 651 Query: 649 TKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLW 708 ++ W + G + +GL P A + R DT + ++ DCCD+ + Sbjct: 652 R-ESVGILNWAVDGALKWQREGLK--APASVQAASKSYRAEMDTLELFVRDCCDLRPDYQ 708 Query: 709 EESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKG 768 + L K+Y + E Y + + +KQK + S G Sbjct: 709 APAGELFKAYQSWAESNGEYK---MRKQKFGAEMKQK----------FMSKKNSGIFYVG 755 Query: 769 LKLKPA 774 LK+K Sbjct: 756 LKIKSD 761 >gi|312984184|ref|ZP_07791530.1| putative nucleoside triphosphatase, D5 family [Lactobacillus crispatus CTV-05] gi|310894403|gb|EFQ43479.1| putative nucleoside triphosphatase, D5 family [Lactobacillus crispatus CTV-05] Length = 774 Score = 408 bits (1047), Expect = e-111, Method: Composition-based stats. Identities = 146/786 (18%), Positives = 265/786 (33%), Gaps = 78/786 (9%) Query: 15 HNGFKLIPLRL---GDKRPQRLGKWEEQLLSSEKIDKLP-ACGFGFVCGVGEQPLYAFDI 70 + IP G + W + + + K P A G F D+ Sbjct: 31 REKYTKIPKNPYNFGAGKSNDQRTWSDFDTALRALHKYPQADGLAFYFA---NGFVGLDV 87 Query: 71 DSKDEKTAN---------TFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTES 121 D D + + F+ L I Q K L K Sbjct: 88 DHIDSDLEDYQEGDTDPNNLVNHFKSLTHNSYTEISQSGKGLHVI-----FKGKIPGKHR 142 Query: 122 TQGHLDILGCGQYFVAYN-----------IHPKTKKEYTWTTPPHRFKVEDTPLLSEEDV 170 G+ ++ G++F P K Y + + P +++ Sbjct: 143 RHGNYEMYESGRFFALTGNTIGKPIIKSLDKPAMTKLYEFCFGKDKVTPLH-PENTDD-- 199 Query: 171 EYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWI 230 E + EI S + Q+ N + A ++ + + D Sbjct: 200 EAIDLPISEIIKRAEDSPSSGKRFTMFMQGGWEQFYNSQSEADMAFANDLAFWCGRDI-- 257 Query: 231 PVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSL 290 + R SS ++ R +TY + + ++ T + Sbjct: 258 ---HKMDQIFRSSSLIRDKWDR-QDGATTYGQRTLQKAINE-TPNVYTPNSEN--TGNYI 310 Query: 291 FYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDK 350 F + K + D F +FLY+ K WY I++ + Sbjct: 311 FSFNEKK--QKPKHYTQDDMGMAQRFIDRYGKNFLYSYIDKEWY--------IYNGSYWS 360 Query: 351 ITASIMNFLVSMKEDVFDLSEEPEDNNKNS-KSPRFWFNTDYRRQNVEENSKAKSTAQSL 409 + + +L+++ + + + + + + E S Sbjct: 361 PDIKGY-IETASDHVIKNLAKDRPAIDPSLPEKDQKKIINSWNKFVNHERSHKAKVDLIK 419 Query: 410 EAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF 469 E +T + D L G +DL G+ + T TG + + + Sbjct: 420 ELQHRLPVTHSMWDQEDMLLNTPSGYVDLTNGKLHPHDIKKMFTAETGAEYSDTIDCPNW 479 Query: 470 LDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 + F EEV+ Y + +G + G K Q G G +GKS +++ ++ G Sbjct: 480 CKFLKQIFQNDEEVIHYVQKAIGYSFTGSTKEQVMFIPYGNGRNGKSVMLDTVQDIAGGY 539 Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588 +S + + AN + RL GSR+VI SE NE ++ +KQ+TGGD + Sbjct: 540 AKTMNVSSIMTK---YNNNGANSDIARLEGSRMVISSEANEGQRLDEGLVKQLTGGDRIV 596 Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQK 646 AR YG + E S+ ++ N +R D+ WRR I+IPFD + D + K Sbjct: 597 ARQMYGKEF-EYQPSYKIWMATNHKPLIRGTDEGIWRRLILIPFDYQVLKDKIDRNLKYK 655 Query: 647 LETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGEN 706 LET ++ W ++G + +GL + PE KA ++ R+ D ++ DCC++G Sbjct: 656 LET-ESMGILNWIVEGAIMWQVEGL--EAPEQIKKASQKYREEMDVLSGFVADCCELGLG 712 Query: 707 LWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRII 766 +S L SY + Y ++ + +K K ++ Sbjct: 713 FTAKSGELYDSYKNWAADANEYK---MTLTRFGKEMTKK---------FHRKVKDGYKVY 760 Query: 767 KGLKLK 772 +G+++K Sbjct: 761 EGIRIK 766 >gi|107022006|ref|YP_620333.1| Phage-plasmid primase P4-like [Burkholderia cenocepacia AU 1054] gi|116688950|ref|YP_834573.1| P4 family phage/plasmid primase [Burkholderia cenocepacia HI2424] gi|105892195|gb|ABF75360.1| Phage-plasmid primase P4-like protein [Burkholderia cenocepacia AU 1054] gi|116647039|gb|ABK07680.1| phage/plasmid primase, P4 family [Burkholderia cenocepacia HI2424] Length = 746 Score = 406 bits (1044), Expect = e-111, Method: Composition-based stats. Identities = 140/786 (17%), Positives = 255/786 (32%), Gaps = 95/786 (12%) Query: 12 QAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKL----PACGFGFVCGVGEQPLYA 67 GF P+ +KRP +++ L E+ P+ + G L Sbjct: 11 DLATKGFACFPIVPNEKRPLTPNGFKDASLDPEQHRAWAEQFPSSNIAYATGAPSGRLIV 70 Query: 68 FDIDSKDEKTANTFKDTFEILHGTPIVR---IGQKPKILIPFRMNKEGIKKKKTTESTQG 124 D+D K+ K+ + HG I I + F + K + + Sbjct: 71 IDVDVKNNKSGAKSLVALQKKHGPLPATRTVITPSGGIHLLFTYPEGM--KIQCKVGFRD 128 Query: 125 HLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPL 184 +DI G Y A + Y W +E K Sbjct: 129 GIDIRADGGYCGAPPSTIE-GNPYEWVDETVPIAP-----APAWLLEEFAKQ-------- 174 Query: 185 VKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSS 244 ++ KT + + + AF NG D Sbjct: 175 GTTRRKRKSRKTAIVPAGNRNQSVMLHAF------SLLNGGLDY---------------- 212 Query: 245 KGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLA 304 R ++ Y+ N + ++ + H Sbjct: 213 ------ERLEEELLEYNAACCNPPLSESEVSQV--------AVNVIRSHQENSGSN---- 254 Query: 305 SRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKE 364 +D N S Y TK W KK ++ V + ++ L+ ++ Sbjct: 255 QHTTDLGNARRMSDLFGDELRYVPQTKQWLKKRESGV-------WQRVDE-LHVLLLARQ 306 Query: 365 DVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDS 424 + + EE + + + + + E N+ K + + ++++ LD Sbjct: 307 LLPLIYEELSRLSPGN-RVEMFEHA----KYTESNTGLKYAVELFRSEPGIAVSAGDLDQ 361 Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE-SEEVM 483 L ++G++DL TG + +L+IT + + + + + E++ Sbjct: 362 GEWMLPVRNGLIDLRTGSFMPMDPKLHITYTAAVDYDPDATCPLWEAFLLEIMNRNVELV 421 Query: 484 DYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP 543 +Y R +G L G G +GKST +N+++ FG+ + +N Sbjct: 422 EYVRRAIGYTLTTLTSEHALFFAFGSGANGKSTFLNVLRALFGDLGAQANGDMLLDKNGG 481 Query: 544 PEAGKANP--SLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESP 601 + RL G R+V +SE E + +K TGG+ +TARL YGN + E Sbjct: 482 AAMSSNAASSEVARLAGKRLVAMSEVEEGRHFSEKTVKWYTGGEDITARLLYGNAF-EFK 540 Query: 602 ASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWF 659 F ++ N ++ D WRR +IPF I RD +KL W Sbjct: 541 PRFKLWLAGNYKPTIKGNDHGIWRRMKLIPFTVTIPPEKRDPDLERKL-RDELPGILNWA 599 Query: 660 LKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYS 719 L G K + G ++ P+ E R D ++W+ + + K + Sbjct: 600 LVGCKQWRENGNKLNEPKAITNEVSEYRGEMDVVESWLSEFTRNDPDGEIHFGDTYKFFK 659 Query: 720 EYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVD 779 + E + N+ S + + L KG+ + K R+ KGL+L + + Sbjct: 660 AWSESQYNFSY---SGKRFGMILADKGY---------KPASKPHRVYKGLRLIVDLQFNE 707 Query: 780 DNSNII 785 + + Sbjct: 708 NTKAYV 713 >gi|262047907|ref|ZP_06020853.1| phage primase [Lactobacillus crispatus MV-3A-US] gi|260571785|gb|EEX28360.1| phage primase [Lactobacillus crispatus MV-3A-US] Length = 773 Score = 404 bits (1037), Expect = e-110, Method: Composition-based stats. Identities = 138/791 (17%), Positives = 269/791 (34%), Gaps = 85/791 (10%) Query: 15 HNGFKLIPLRL---GDKRPQRLGKWEEQLLSSEKIDK-LPACGFGFVCGVGEQPLYAFDI 70 N IP+ + W + + + +D+ A G F DI Sbjct: 30 RNKNTKIPIDPYNGRAGKSNDPSTWSDFNTALKALDEIERADGLAFYF---TNGYVGLDI 86 Query: 71 DSKDEKTAN---------TFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTES 121 D + A+ + F ++ + + Q + + Sbjct: 87 DHISDDLADWHQGDSSVSNLINKFRLMTDETYMEVSQSGTGIHCI-----FKGEIPGNRR 141 Query: 122 TQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEIT 181 +G+ ++ G++F + + LS+E ++ L+ F Sbjct: 142 RKGNYEMYQQGRFFALTG---------------NSIGIPKIVTLSKEKMQALYNFLFGAD 186 Query: 182 VPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGS----HDEWIPVVMAVH 237 + + + + + R + F G ++ MA Sbjct: 187 KSVPDKIEEPEITALDLSIPD--IIQRAEKSKTGTRFTMFMKGGWEQFYNSHSEADMAFA 244 Query: 238 H-----ETRGSSKGKEIARRWSKQGSTYDEENFNYKW------DTFDFEEIGDTAKKRST 286 + R K I R S YDE+ + ++ Sbjct: 245 NDLAFWTGRDFHKMDTIFRNSSLMRDKYDEKRGATTYGISLLNKAISEAVNIYNPEQDGK 304 Query: 287 FTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSL 346 L + + K +A + D + F Y A K WY + + + + Sbjct: 305 EPDLVF-NWNKPKKRAVARSWDDTGRGLRLNDQFGDVFRYMAADKTWYFYNGSYWELDNG 363 Query: 347 TLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTA 406 ++ A + L+ + F + + + + + +F + Sbjct: 364 RHIELAAEKVVNLIKTENPDFSFATQQDKDKAMKEWNKFIKESRS---------HMAKIH 414 Query: 407 QSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPS 466 E +I + D + L + G +DL G+ + ++ T + + + Sbjct: 415 MIEEFKKYVTIDHGVFDHDNMLLNTESGYVDLTNGELKDHDIKKMFSEQTASEYSDNIDC 474 Query: 467 QEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF 525 + D + F E+++ Y + VG ++ G Q F + G G +GKS +N I+ Sbjct: 475 PMWKDFLEQIFNHDEKLIHYIQKAVGYSITGSTAEQVFFLLLGTGRNGKSVFINTIRNIL 534 Query: 526 GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGD 585 G+ + S I+ N +G AN + RL +R+V SE NE ++ + +KQ+TGGD Sbjct: 535 GSYAKQMSVESIIVHN---SSGSANSDIARLENTRLVTSSEANEGSRLDESLVKQLTGGD 591 Query: 586 CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASF 643 + AR YG + E F ++ N F+R D+ WRR V+PF+ I D + Sbjct: 592 RILARFLYGQEF-EYDPKFKIWMATNHLPFIRGTDEGIWRRIKVVPFNVQIPANKVDKNL 650 Query: 644 AQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDI 703 KL W ++G + +GL PEV A ++ R+ D +A++D+CC Sbjct: 651 ENKL-KAEWTGILNWIVQGAIMWQVEGLK--DPEVVQDASKQYRENMDPLEAFLDECCKA 707 Query: 704 GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSK 763 G N L +Y ++ + +S + +K + + ++ Sbjct: 708 GSNYTIMGRPLYNAYRDWARESNE---HLMSMTKFGREMAKK---------LPKTKERNG 755 Query: 764 RIIKGLKLKPA 774 G++LK Sbjct: 756 TRYVGIQLKKE 766 >gi|229008352|ref|ZP_04165829.1| hypothetical protein bmyco0002_51610 [Bacillus mycoides Rock1-4] gi|228752920|gb|EEM02472.1| hypothetical protein bmyco0002_51610 [Bacillus mycoides Rock1-4] Length = 784 Score = 398 bits (1023), Expect = e-108, Method: Composition-based stats. Identities = 156/815 (19%), Positives = 287/815 (35%), Gaps = 94/815 (11%) Query: 5 QWKEQAKQAIHNGFKLIP--LRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGE 62 QW + +N +P + + W + + + G GFV + Sbjct: 20 QWILWRFETRNNKPTKVPCQVDGEMAQANNRSTWSTFATAVKFYLEGDYDGIGFVF-SRQ 78 Query: 63 QPLYAFDID--SKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120 DID DEKT + + L K I I + N + Sbjct: 79 DNYIGIDIDKCVVDEKTNAFATEIIDTLDSYTEFSPSGKG-IHIIIKGNLPQSVLGTGRK 137 Query: 121 STQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEI 180 +T+ L+I G++F +R D ++E E K+F + Sbjct: 138 NTKHGLEIYSYGRFFTFTG---------------NRENSNDVYERTDELAEVFEKYFDDS 182 Query: 181 TVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSH--DEWIPVVMAVHH 238 + K +N R + YNGS ++ +A+ + Sbjct: 183 D--IQGRVNLAEFEKDEIKISNDALWERMFRSKNGDEIRSLYNGSLINNDHSASDLALCN 240 Query: 239 ---------------ETRGSSKGKEIAR--RWSKQGSTYDEENFNYKWDTFDFEEIGDTA 281 +S ++ + TY E + + + Sbjct: 241 HLAFWTGKSATRMDSMFCETSLMRDKWDVIHFRDTNETYGERTIATAISSTSTTILDN-- 298 Query: 282 KKRSTFTSLFYHHGKLI----PKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKD 337 K++ S +H+G K R ++ N + Y +D Sbjct: 299 KQQFEEFSFDFHNGDAKEVVEDKPKKKFRLTELGNAERIAYEYGHVIKYVSDIG------ 352 Query: 338 KNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVE 397 +IW K + + + L + +S W RR Sbjct: 353 ---WFIWDGKRWK-LDTKKEIERITAKVLRSLYK------SEDESEMKWARMCERR---- 398 Query: 398 ENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTG 457 N + S + + + D ++GI+DL+TG+ + +EL +TK T Sbjct: 399 -NIRMNSIK---DLMPLVPGEREDFDRHKYLFNVENGIVDLKTGKLQQHDRELGLTKITN 454 Query: 458 TPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKST 516 F E E+L+ + F +E+++Y R +G +L G Q + + G G +GKST Sbjct: 455 IAFDENTKCPEWLNFLDQIFQGDQELVEYMQRLIGYSLTGEITEQIMVFLIGGGSNGKST 514 Query: 517 LMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAA 576 +N IK G + I + AN + RL+GSR V E+ E ++++ A Sbjct: 515 FINTIKDLMGEYGKQAKSDTFIKKKET----GANNDIARLVGSRFVSAIESEEGEQLSEA 570 Query: 577 KIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI 636 +KQ+TGG+ + AR Y E F F N ++ D+ WRR ++PF+ + Sbjct: 571 FVKQITGGEPVLARFL-RQEYFEFIPEFKVFFTTNHKPVIKGVDEGIWRRIRLVPFNLQL 629 Query: 637 A--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQ 694 RD +KL W ++G + GL + P + +KA + ++ D Sbjct: 630 PKEKRDKKLPEKLSL-EMPGILNWAIEGCLKWQQSGL--NDPAIVMKATGDYKEEMDILG 686 Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754 ++ +CC E++ E+ L + Y+ + + ++ R L+ +G Sbjct: 687 PFMFECCFKREDVQIEAKELYEVYANWCFRNGE---HQLKNRAFYRILESQGL------- 736 Query: 755 KIEKEWKSKRIIKGLKLKPAFESVDDNSNIIDFKR 789 K E+ ++K IKG+ L ++ +++F + Sbjct: 737 KRERGNRNKYFIKGVTL-IERKNTFTQQKLLNFDK 770 >gi|189426164|ref|YP_001953341.1| P4 family phage/plasmid primase [Geobacter lovleyi SZ] gi|189422423|gb|ACD96821.1| phage/plasmid primase, P4 family [Geobacter lovleyi SZ] Length = 695 Score = 398 bits (1023), Expect = e-108, Method: Composition-based stats. Identities = 134/722 (18%), Positives = 246/722 (34%), Gaps = 52/722 (7%) Query: 66 YAFDIDS---------KDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKK 116 + DID + A L V G ++ + Sbjct: 4 FWLDIDCGPGKPFPDQQAGGRALLEFAKATKLPSPTGVSSGNGLYAYWVLDTAISAVEWR 63 Query: 117 KTTESTQ---GHLDILGC-GQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEY 172 T + D + A ++ P K ++ E Sbjct: 64 TTAALLKKACQAYDFEADPSRTSDAASVLRPVG--VHNRKAPETPKPVKVGIIRERISPE 121 Query: 173 LFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPV 232 F+ E + + + + T +I S +EWI V Sbjct: 122 EFRLLIEKALLAKGEPLPAVKLDQVAADEFSIKTPADIANLKSALPA-ISPDGREEWICV 180 Query: 233 VMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFY 292 M +HHE GS +G + WS+ + + +E KW F GD + T ++++ Sbjct: 181 GMGLHHEFAGSEEGLALWEEWSRGSTKFKDEECPEKWAGF-----GDRVDQPVTAGTIYH 235 Query: 293 HHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKIT 352 L A R S+ + + + + + ++ Sbjct: 236 MAKAAGW--LPAERVSEEAALKLLTDMRVSSYFAAKFKDRLRFNPSLDWLVFDGQRWNSN 293 Query: 353 ASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAG 412 + +KE + ++ + +++ + + + + S AQ + Sbjct: 294 TPGGAY-PFLKELIAEIRAKASQIENDAERMSMLKESV-KLEAHNRQAMVISAAQKI--- 348 Query: 413 SIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDL 472 FS++S LD L +G LDL TG + + +IT+ + + F Sbjct: 349 PDFSVSSCQLDRDPMLLNVLNGTLDLRTGSLKQHSPADFITRLVPIEYNHTATAPVFEAF 408 Query: 473 VSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVI 531 +S + + + R G L G Q + + G G +GKST +N++K G+ Sbjct: 409 LSKIMAGNTALTAFIKRWAGYCLTGDTSEQVLLFLYGTGRNGKSTFVNILKKLLGDFAAT 468 Query: 532 NAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARL 591 A + + + +L + G+R+V ++E N+ D +N A +K +TGGD + R Sbjct: 469 GAGDLILHKGNGDLS--TLSALAAMRGARLVNLNELNDGDRLNEAAVKNLTGGDLLACRF 526 Query: 592 NYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLET 649 + + E +F + N +R D WRR ++ F I++ D QKLE Sbjct: 527 LHKE-FFEYKPAFKLLLFGNHKPSIRGTDHGIWRRLHLLKFGVTISDAECDPHLEQKLE- 584 Query: 650 KYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWE 709 K W ++G + + L P +A E R D + W+DDCC + Sbjct: 585 KELPGILAWAVQGCLEWQREKLSP--PAEVKEAVAEYRNSEDALKGWLDDCCQLAPQFRT 642 Query: 710 ESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGL 769 + L S+ +Y + +S R + L GF G + + +GL Sbjct: 643 PAGLLLNSFIQYSNWKG------LSARRFSSMLTVAGFTKGR---------SNGVVWEGL 687 Query: 770 KL 771 L Sbjct: 688 AL 689 >gi|284801589|ref|YP_003413454.1| hypothetical protein LM5578_1342 [Listeria monocytogenes 08-5578] gi|284994731|ref|YP_003416499.1| hypothetical protein LM5923_1295 [Listeria monocytogenes 08-5923] gi|284057151|gb|ADB68092.1| hypothetical protein LM5578_1342 [Listeria monocytogenes 08-5578] gi|284060198|gb|ADB71137.1| hypothetical protein LM5923_1295 [Listeria monocytogenes 08-5923] Length = 762 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 130/779 (16%), Positives = 263/779 (33%), Gaps = 82/779 (10%) Query: 20 LIPLRLGDKR---PQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEK 76 IP+ D W + + + ++K G GF ++P + DID ++ Sbjct: 31 KIPMNANDGSYGNSVDDRTWADFETALDSLEKYKFDGLGFYF---KKPYFGVDIDDIKDE 87 Query: 77 TANTF--------KDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDI 128 + + + L + +I +G++++ Sbjct: 88 IEDYLYGNTENIAGEFIQTLSSYTEYSVSGTGIHII-------AKGSFPEGGRRKGNIEM 140 Query: 129 LGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDK 188 G++FV Y +V + + + + Sbjct: 141 YPDGRFFVMTGQVIDN---YR--------QVNEATSAIQYLHTKYIGTNE-VRQINNLQS 188 Query: 189 KSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHH-----ETRGS 243 +P R + ++G + +A + + Sbjct: 189 TVDLPVSDIIQRAERSKQGAQFKTLYDGL----WDGLYPSQSEADLAFANMLAFWTGCNA 244 Query: 244 SKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKK----RSTFTSLFYHHGKLIP 299 K EI R + +D++ + + + S Sbjct: 245 EKMDEIFRSSGLYRTKWDQKRGAQLYGEMVINKAITNTSEIYQPGSELEGYSISIKNQNN 304 Query: 300 KGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFL 359 D N F ++ K +Y D +I Sbjct: 305 TARKVYGLDDTGNAERFRDKFHDIVRFSYINKGFYYYDSKVW---------KYDNIGAVK 355 Query: 360 VSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITS 419 + + + D+ E + S + + + ++ + + EA + + Sbjct: 356 TLVDDVIKDMKSEFAYMDNESDAEKAFMKHLKATRSNKGKTNMLK-----EAQHLMPVLP 410 Query: 420 DLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-E 478 + D FL Q+G ++L+ G+ + ++ TK + + + + + ++ F Sbjct: 411 EEFDRYKYFLNTQNGYINLQNGELINHDRQKMFTKISNIEYTDKIDAPLWQAFLNDIFAG 470 Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538 +E+++Y + VG +L G Q + G G +GKS +++I FG+ + + Sbjct: 471 DKELINYIQKAVGYSLSGSTSEQVMFILFGNGRNGKSVFLDIINDIFGSYATNIQPQTIM 530 Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598 ++ ++ AN + RL G+R V +E NE ++ +KQ+TGGD +TAR Y + + Sbjct: 531 VKQ---QSSNANSDIARLHGARFVTTTEPNEGVRLDEGLVKQLTGGDKVTARHLYKDEF- 586 Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAK 656 E F ++ N +R DD WRR ++PF I + D KL Sbjct: 587 EFTPEFKIWMATNHKPIIRGRDDGIWRRLHLVPFTVKIPDEKVDKQLKYKL-RSELTGIL 645 Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAK 716 W ++G + +GL +P+ A E + D A+I+DCC+ GEN + +L + Sbjct: 646 NWAVEGFLKWQKEGLG--MPKAVENASSEYKSEMDVITAFIEDCCETGENKQINAKTLYE 703 Query: 717 SYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAF 775 +Y E+ Y +S+ + G+K EK K + K + L + Sbjct: 704 TYREWARDNGQY---LMSSTKFGKEM-------GLKFEK--KRSNGQTAYKCITLNKEY 750 >gi|163816182|ref|ZP_02207550.1| hypothetical protein COPEUT_02366 [Coprococcus eutactus ATCC 27759] gi|158448602|gb|EDP25597.1| hypothetical protein COPEUT_02366 [Coprococcus eutactus ATCC 27759] Length = 769 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 118/786 (15%), Positives = 248/786 (31%), Gaps = 61/786 (7%) Query: 6 WKEQAKQAIHNG-FKLIPLRLGDKR--PQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGE 62 WK + + NG +P ++ KR + + L+ +D G G Sbjct: 18 WKYEKR----NGRMTKVPYQINSKRASSADKKTFSDFRLAVSAMDGYDGIGMGAF----- 68 Query: 63 QPLYAFDIDSK--DEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120 DID K +D E ++ + ++ + + Sbjct: 69 DDFCMVDIDHCVFGGKLTQMAEDIVEKMNSYTEISPSGMGVRIVCKASSLSYDTDRYYIN 128 Query: 121 STQGHLDILGCG--QYFVAYNIHPKTKKEYTWTTPPHRFKVED-----TPLLSEEDVEYL 173 + + L+I G + F + + + +E P ++ Sbjct: 129 NQKLGLEIYAAGVTRKFCTLTGNVIRNRGIEERSAELGTILETYMFRPIPEKKNRMLDIP 188 Query: 174 FKFFQEITV--PLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIP 231 + + +V ++ W ++ + L+ + G ++ Sbjct: 189 GSYLSDDSVIRLASDSRQGEKFKALWNGEIPDGKSHSDADMSLASILAFWCGGDTEQ--- 245 Query: 232 VVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKW-DTFDFEEIGDTAKKRSTFTSL 290 + R S + R + GSTY DF S F + Sbjct: 246 ----MDRLFRKSGLMRTKWDRV-QSGSTYGALTLEKAVAQAMDFYRPYARTSAESDFDDM 300 Query: 291 FYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDK 350 +L ++D + +F+ K Y K WY ++ T Sbjct: 301 LQKLIELNVSDNSRYPWNDNGSGRLFADVYKDIARYVPKRKKWY--------VYDGTRWI 352 Query: 351 ITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLE 410 + + K L + + + + N+ + Sbjct: 353 SDIGGLKTMELAKSLADSLVRYALTITDERRRKDYLEYSAKWQSRNYRNTYI------SD 406 Query: 411 AGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFL 470 A S++ I D + +L Q+G LDL+TG+ T + +TK G + + F Sbjct: 407 AQSVYPIAMSEFDRNIYYLNCQNGTLDLQTGEFHPHTPQDKLTKIAGAAYDPKTKNPRFT 466 Query: 471 DLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRG-VGGSGKSTLMNLIKYAFGNQ 528 VS + + + +G L G + + G +GK TLM + G+ Sbjct: 467 RFVSEVMSGDMDKAKFMQKSLGYGLTGDTRYECMFFYYGATTRNGKGTLMESTLHVMGDY 526 Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588 + + I + + RL G R ISE +N A+IK MTG D + Sbjct: 527 GLTVRPET-IAAKPSANSQNPTEDIARLAGVRFANISEPRRGLVLNEAQIKSMTGNDTLN 585 Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQK 646 AR + N++ + F ++ N + + R ++IPFD+ ++ + + Sbjct: 586 ARFLHENSF-DFKPQFKLYVNTNYLPAITDMTLFSSGRIVIIPFDRHFEEWEQEQNLKAE 644 Query: 647 LETKY-TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE 705 W ++G +G P+ A + +D + ++++ + + Sbjct: 645 FSKPEAASAILNWLIEGYTLLQKEG--FSQPKSVKDATMSYQHDSDKIELFVEEFLEQEK 702 Query: 706 NLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRI 765 + + ++ ++Y + + +R L+ G + R + + + Sbjct: 703 DAECRTSAVYQAYRNWCNDNGYFAEN---SRNFNQALRTIG---SVVRRRPRDGGEKTTL 756 Query: 766 IKGLKL 771 + G +L Sbjct: 757 LTGYRL 762 >gi|167920131|ref|ZP_02507222.1| phage/plasmid primase, P4 family protein [Burkholderia pseudomallei BCC215] Length = 761 Score = 396 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 131/787 (16%), Positives = 255/787 (32%), Gaps = 95/787 (12%) Query: 12 QAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKL----PACGFGFVCGVGEQPLYA 67 + G +P+RL DK P +++ +K P + G + Sbjct: 16 DLVAEGLAPLPIRLNDKVPATQHGFKDANQDPDKHRAWANECPDYNVAYATGPASGYVLV 75 Query: 68 FDIDSKDEKTA--NTFKDTFEILHGTPIVR--IGQKPKILIPFRMNKEGIKKKKTTESTQ 123 D+D K+ + + P R + +R + K + + Sbjct: 76 VDVDVKNGDATGLKSISRLEKEHGPLPPTRKVFTPSGGYHLIYRYPENL--KVPSRINFL 133 Query: 124 GHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVP 183 +D+ G Y +A + Y + D P+L T Sbjct: 134 PRVDVKAEGGYCLAPPSII-NDEPYFY----------DEPVLPISRAPAWLLELLCSTQG 182 Query: 184 LVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGS 243 K+ SK+ T N + E ++ + Sbjct: 183 TKPRKRKSAKSKSATIGNRNESVAFE-----------------------GFSLLNAGLNP 219 Query: 244 SKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLL 303 ++ Y+ N + + +I Sbjct: 220 -------DLLEEELLEYNATNCDPPLSESEVSQIAANV------------ASSHQKNNDS 260 Query: 304 ASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMK 363 SR +D N S Y ++ K W +K + + + L+ + Sbjct: 261 VSRATDLGNAKRMSELYSDTLRYVSEMKRWLEKSPSG-------AWRFIDE-LRVLLLAR 312 Query: 364 EDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLD 423 E + + +E N ++ + E N K + + ++++ LD Sbjct: 313 EIIPMIHDEIRRLNPGNRRELM-----DHAKYSESNKALKDAVELFRSEPGIAVSASNLD 367 Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEV 482 ++G++DL+TG+ + L+IT++ G F + + + E+ Sbjct: 368 EGEWMFPAKNGLVDLQTGKFMPMDPALHITQTAGVNFDPDATCPRWEAFLLEIMNGNVEL 427 Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542 ++Y R +G L G G +GKST +NL++ FG+ + +N Sbjct: 428 VEYLRRAIGYTLTCQTSEHALFFAFGSGANGKSTFLNLLRALFGDLGAQANGDMLLDKNG 487 Query: 543 PP--EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600 + ++ + RL+G R+V +SE E + +K TGG+ + AR+ Y N +S Sbjct: 488 GQAMSSNASSSEVARLVGKRLVAMSEVEEGRHFSEKTVKWYTGGEDIVARMLYQNAFS-F 546 Query: 601 PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKW 658 F ++ N ++ D WRR +IPF I RD +KL W Sbjct: 547 TPRFKLWLAGNYKPTIKGNDHGIWRRMKLIPFTVTIPPEKRDPDLERKL-RDELPGILNW 605 Query: 659 FLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSY 718 L G + + G + P + E R D ++W+ + + K + Sbjct: 606 ALVGCQQWRDNGYKLKEPAIITNEVSEYRGEMDVVESWLSEFTRDDPDGEIHFGDAYKFF 665 Query: 719 SEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESV 778 + E E N+ S + + + L+ KG+ + R+ +GL L + Sbjct: 666 KAWSEAEYNFSY---SRKRLGMILQDKGYKPVARPH---------RVYQGLTLLVDLQFN 713 Query: 779 DDNSNII 785 ++ + Sbjct: 714 ENTGAYV 720 >gi|296394743|ref|YP_003659627.1| phage/plasmid primase [Segniliparus rotundus DSM 44985] gi|296181890|gb|ADG98796.1| phage/plasmid primase, P4 family [Segniliparus rotundus DSM 44985] Length = 761 Score = 394 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 125/815 (15%), Positives = 247/815 (30%), Gaps = 90/815 (11%) Query: 1 MPVMQWKEQAKQAIHNGFK-LIPLRLGDKRPQRLG---------KWEEQLLSSEKIDKLP 50 M + E A + G++ ++PL G K P G W + + SE+ Sbjct: 1 MAASVYAEHAPRYWAAGWRGVLPLPPGAKTPPPTGFTGHDGPAPSWADVVAWSEERA--- 57 Query: 51 ACGFGFVCGVGEQPLYAFDIDSKDEK-TANTFKDTFEILHGTPIV--RIGQKPK--ILIP 105 + DID K +T + P ++ + Sbjct: 58 GSNLALRL---PDGVVGIDIDHYAGKRGGDTLAEAVRRWGPLPPTVMSTSREDGVSGIRL 114 Query: 106 FRMNKEG--IKKKKTTESTQGHLDILG-CGQYFVAYNIHPKTKKEYTW-----TTPPHRF 157 +R+ + E G ++++ +Y VA + Y W P Sbjct: 115 YRLPSPAALTTQIGFPELGLGGIEVVQRHHRYLVAPPSIHPEGRAYRWLDSQAMGPAELP 174 Query: 158 KVEDTPLLSEED-----VEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITA 212 + PLL E + R+ ++ + Sbjct: 175 EPGSLPLLPERWRDALAAAPAPIAAPAPIAASDPAAALASLRGGAMSETVRERLDKHVAT 234 Query: 213 FLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGK-EIARRWSKQGSTYDEENFNYKWDT 271 ++ + + ++ G + E+ R + + + D Sbjct: 235 VRDPGAGSRHDAALKGALALLRLGEQGHPGVREALDELGRAFVAATTADGSRTPHQAVDE 294 Query: 272 FDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTK 331 F + + +A R +D N + Y Sbjct: 295 FLR-----MVENPRGHRLI----AATPTPDPVAPRLTDEANADLLVAEHGHGLRYDPARG 345 Query: 332 AWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDY 391 AW W + + + L E+ ++ ++ + Sbjct: 346 AW--------LEWDQSRWAYRPDDAACFQAAVKTAKSLPEQTKEEREHKRR--------- 388 Query: 392 RRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELY 451 ++ ++ + + LD+ L G++DL TG + E Sbjct: 389 ----SLNLRGLEAMVKTARRDPRIRVDPERLDADPMLLNTPGGVVDLATGALREHDPEAL 444 Query: 452 ITKSTGTPFVEGEPSQEFLDLVS-GYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVG 510 TK G + + F ++ + E++ Y R G+A +G + G G Sbjct: 445 CTKLAGCAPDFAQRTPIFDAFLAVSLADDAELIGYLRRLAGLAAIGLPS-PILPFLHGAG 503 Query: 511 GSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN 570 +GKS N++ G+ + + + RL G R+V+ SE + Sbjct: 504 ANGKSVFANILLRVLGDYATTAPPDFLLASR----GDRHEAEIARLKGMRLVVCSEVERD 559 Query: 571 DEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVI 630 + A+IK +TGGD +TAR YG + S +++ N VR ++WRR +I Sbjct: 560 SRFDEARIKLLTGGDRLTARFLYGQHF-TFAPSHCVWLMGNHQPEVRAGGVSFWRRMRMI 618 Query: 631 PFDKPIANRD--ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQ 688 PF + + + + + + W ++G GL PE A + + Sbjct: 619 PFTVVVPEAERVDALDELIAQEEGPGVLAWIVRGALEARRDGL--ADPEKVRAATRDYAE 676 Query: 689 GTDTYQAWIDDCCDIGENL--WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746 D ++ + C IG E+ + ++YS + + + ++ L + G Sbjct: 677 EEDALGRFLAERCRIGGGDMVKIEAGRVYRAYSAWCRRSGESE---MNQNVFGRELTRHG 733 Query: 747 FIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDN 781 I + K L L P E+ + Sbjct: 734 ---------IGRTRSGKWFYTNLHLLPDDEADERE 759 >gi|313123979|ref|YP_004034238.1| DNA-polymerase or DNA-primase [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312280542|gb|ADQ61261.1| Putative DNA-polymerase or DNA-primase [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 784 Score = 392 bits (1006), Expect = e-106, Method: Composition-based stats. Identities = 139/785 (17%), Positives = 250/785 (31%), Gaps = 72/785 (9%) Query: 15 HNGFKLIPLRLGDK---RPQRLGKWEEQLLSSEKIDKLP-ACGFGFVCGVGEQPLYAFDI 70 N IP+ + W + + E ++K A G F G DI Sbjct: 29 RNKNTKIPIDAMTGNNAKTNDPSTWCDFKTAKEGLEKNSRASGLAFFFG---DGYVGLDI 85 Query: 71 DS-------KDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQ 123 D K+ A D F L I Q + L K + Sbjct: 86 DHIANDIELKELGNAENEVDEFINLTDHTYGEISQSGEGLHFI-----FKGKIPGKRRRK 140 Query: 124 GHLDILGCGQYFVAYN--------IHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFK 175 + ++ G++F + + T T + + L + + + + Sbjct: 141 SNYEMYQDGRFFALTGNMITSNTISELSSDQMTTLYTRLFGKEDKVIDLHPQVETQAIDL 200 Query: 176 FFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMA 235 +I + D + + + + A L+ + + D Sbjct: 201 PVPDIIRKM-LDSSKGQRDRLFMQGGWEKIYASQSEADLAFANDLAFWTGKDP-----EK 254 Query: 236 VHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDF------EEIGDTAKKRSTFTS 289 + R S+ ++ TY E N + G F Sbjct: 255 MDTIFRNSALMRDKWDE-KHGAVTYGEMTINKAIAGTTSVYHPTSDVAGPFVDNVFKFNV 313 Query: 290 LFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLD 349 + + D F F Y K WY DK+NV Sbjct: 314 PPESAERAKNAEHPHRSYDDMGMAQRFQDRWPDTFRYLVADKEWYYYDKDNV-------W 366 Query: 350 KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSL 409 K N + + +L +EP + ++++ + ++ + + Sbjct: 367 KKDDRK-NVEKACDVVINELKDEPLYVPEGVSEEDAAKAFTKFKKHMRSRAAKEAMIKEI 425 Query: 410 EAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGE--PSQ 467 + +++ D L ++G +DL G ++ F Sbjct: 426 --MHLLAVSHGEFDQDPMLLNVKNGYVDLTDGTLHDADWTKMFSRQASVEFSPNAEYDHP 483 Query: 468 EFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFG 526 + + F +E ++Y + +G +L G Q G G +GKS ++ +I G Sbjct: 484 MWDKFLYQTFGGDQEAIEYIQKAIGYSLTGLTSEQVLFFCYGKGRNGKSLMLKVISDILG 543 Query: 527 NQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDC 586 + + + I++ AN + RL G+R V+ SE NE +N KQ+TGGD Sbjct: 544 SYSQTMSADTLIVKG---STNGANSDIARLEGARFVVSSELNEGSRLNEGLTKQITGGDR 600 Query: 587 MTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFA-Q 645 + AR YG + E ++ N +R D+ WRR I++PFD IA D Sbjct: 601 VVARHLYGKEF-EFDPCCKIWMATNHEPIIRGTDEGIWRRIIILPFDHIIAKEDVDPKLY 659 Query: 646 KLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE 705 + W ++G Y +GLDV PE A E+ R D QA+++D E Sbjct: 660 DKLMSEAVGILNWAVEGAIKYQLEGLDV--PESIKSAVEDYRGQMDEVQAFLEDETVPCE 717 Query: 706 NLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRI 765 S L + ++ + Y K F +K + +K + + Sbjct: 718 GAQVSSKVLYSKFQDWARRNGEYV------------FSHKAFSQKMKDKCKKKHTRVGTV 765 Query: 766 IKGLK 770 G++ Sbjct: 766 YLGIR 770 >gi|254933547|ref|ZP_05266906.1| primase [Listeria monocytogenes HPB2262] gi|293585111|gb|EFF97143.1| primase [Listeria monocytogenes HPB2262] Length = 757 Score = 392 bits (1006), Expect = e-106, Method: Composition-based stats. Identities = 120/750 (16%), Positives = 254/750 (33%), Gaps = 83/750 (11%) Query: 20 LIPLRLGDKR---PQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEK 76 IP+ + W + + ++K G GF + P + DID ++ Sbjct: 31 KIPMNANNGSYGNSVDERTWADFETALASLEKFQFDGLGFYF---KAPYFGVDIDGIQDE 87 Query: 77 TANTF--------KDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDI 128 + + + L + +I +G++++ Sbjct: 88 IQDYLYGNTDNIAGEFIQTLASYTEYSVSGAGIHII-------AKGDFPEGGRRKGNIEM 140 Query: 129 LGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDK 188 G++FV Y +V + + T + ++ Sbjct: 141 YPDGRFFVMTGQVIDN---YR--------QVNEATSAIQYLH----------TKYIGTNE 179 Query: 189 KSIIPSKTWTNNNNRQYTNREITAFLSC-----FGEEFYNGSHDEWIPVVMAVHH----- 238 + T + + ++G + +A + Sbjct: 180 VRQTNNLHSTVDLPVSDIIHRAEQSKQGSQFKTLFDGLWDGLYPSQSEADLAFANMLAFW 239 Query: 239 ETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKK----RSTFTSLFYHH 294 S K EI R +D++ + + + S Sbjct: 240 TGCNSEKMDEIFRSSGLYRQKWDQKRGAQLYGEMVINKAITNTSEIYQPGSDLEGYSISI 299 Query: 295 GKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITAS 354 K + D N F ++ K +Y D + Sbjct: 300 KKQNNTARIVYGLDDTGNAERFRDKFHDIVRFSYINKGFYYYDSKVW---------KYDN 350 Query: 355 IMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSI 414 + + + + D+ E + S + + + ++ + + EA + Sbjct: 351 VGAVKTLVDDVIKDMKSEFAYMDNESDAEKAFMKHLKATRSNKGKTNMLK-----EAQHL 405 Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVS 474 + + D FL Q+G ++L+ G+ + ++ TK + + + + + + ++ Sbjct: 406 MPVLPEEFDRYKYFLNTQNGYINLQNGELINHDRQKMFTKISNIEYTDKIDAPLWQEFLN 465 Query: 475 GYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533 F +E+++Y + VG +L G Q + G G +GKS +++I FG+ Sbjct: 466 DIFAGDKELINYIQKSVGYSLSGSTSEQVMFILFGNGRNGKSVFLDIINDIFGSYATNIQ 525 Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593 + +++ ++ AN + RL G+R V +E NE ++ +KQ+TGGD +TAR Y Sbjct: 526 PQTIMVKQ---QSSNANSDIARLHGARFVTTTEPNEGVRLDEGLVKQLTGGDKVTARHLY 582 Query: 594 GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKY 651 + + E F ++ N +R DD WRR ++PF I + D KL + Sbjct: 583 KDEF-EFTPEFKIWMATNHKPIIRGRDDGIWRRLHLVPFTVKIPDTKVDKQLKYKL-RRE 640 Query: 652 TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEES 711 W ++G + +GL +P+ A E + D A+I+DCCD+ E + Sbjct: 641 LTGILNWAVEGFLKWQREGLG--MPKAVENASSEYKSEMDVITAFIEDCCDVREGEKVNA 698 Query: 712 HSLAKSYSEYREQELNYDRKRISTRTVTLN 741 + ++Y ++ ++ Y +S+ Sbjct: 699 KKMYETYRDWAKENGQY---LMSSTKFGKE 725 >gi|313114054|ref|ZP_07799607.1| nucleoside triphosphatase, D5 family [Faecalibacterium cf. prausnitzii KLE1255] gi|310623624|gb|EFQ07026.1| nucleoside triphosphatase, D5 family [Faecalibacterium cf. prausnitzii KLE1255] Length = 799 Score = 391 bits (1005), Expect = e-106, Method: Composition-based stats. Identities = 127/753 (16%), Positives = 245/753 (32%), Gaps = 53/753 (7%) Query: 19 KLIPLRLGDK---RPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDS-KD 74 P+ +P W + + + G G + G L DID +D Sbjct: 21 AKTPINPATGQNAKPNDPATWGTLEAAQAAVSRFGLRGVGVLLG---DGLCGIDIDHCRD 77 Query: 75 EKTANTFKDTFEILHG--TPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCG 132 T EI+ G T + + F K +S+ G L++ G Sbjct: 78 PDTGVLSDMAREIIDGMQTYAEESPSGTGVHLLFTGQKPA---GACRKSSIG-LEMYDGG 133 Query: 133 QYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSII 192 +YF T + V +Q++ + ++ Sbjct: 134 RYFTVTGKALNDLAIEERTAQCAAVHAKYLAKPEAPWVPAPAGVWQKVDRSDEELLRTAC 193 Query: 193 PSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMA-VHHETRGSSKGKEIAR 251 ++ + + + + W + + H R S + Sbjct: 194 AARDGERFAALYAGDWQAYYNSHSEADLSFCNLLAFWFGADVERMDHVFRTSGLMRPKWD 253 Query: 252 RWSKQGSTYDE-------ENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPK---- 300 + TY + + + A + +L +G P Sbjct: 254 E-RRGAKTYGRWTLERAVSDCQEVYTPSPEPDKTPFADQDEALRALNVKYGTQSPAAAPA 312 Query: 301 -GLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFL 359 G+ D N F Y K W +W K + + Sbjct: 313 PGVKTYSLDDTGNARRFRDRYADRVRYNPTDKCW--------MVWDGARWKRDD--LATI 362 Query: 360 VSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITS 419 + +++ D ++ ++ + + ++ AQ L + Sbjct: 363 KGLADEMLDQMDKACFGIRDINTAGALRRHVQKSRSSRSKEAFLKEAQHL---PGIPMLP 419 Query: 420 DLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-E 478 + D + L ++GIL+L + V + YIT+ + + + + Sbjct: 420 EQFDRNKGLLNLRNGILNLARRELVPHDRARYITRMAQVDYDPAAQAPVWEAFIQSVTGG 479 Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538 ++ +Y VG L G + Q + G G +GKST + + G+ +NA+A I Sbjct: 480 DAQLAEYLQVMVGYCLCGSTREQCMFFLYGDGANGKSTFLETLAKMLGDY-CMNAQADTI 538 Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598 R +G A + RL G+R V + E ++ ++ +KQMTGG+ +TAR YG + Sbjct: 539 ASTRSRSSGAARSDVARLKGARFVTLEEGDQGATLDEGLVKQMTGGNTITARFQYGKEF- 597 Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDASFAQKLETKYTLEAK 656 E F N + D WRR ++PF + I +D QKLE Sbjct: 598 EFRPEFKLVEATNHLPKIHGTDVGIWRRIRLVPFTQSIPEEKQDILLPQKLE-AELPGIL 656 Query: 657 KWFLKGVKAYISK---GLD--VDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEES 711 W L G++ +++ G + A +Q D A++ DC + E ++ Sbjct: 657 NWALDGLQKWLANSQGGRRHGLPACAAVDSAVSAYKQDQDRIAAFLADCTEPAEGSTVQA 716 Query: 712 HSLAKSYSEYREQELNYDRKRISTRTVTLNLKQ 744 L ++Y + + + R++ + + +K+ Sbjct: 717 SVLFRTYLNWCSENNE--KWRMANKQFGMEVKK 747 >gi|224501854|ref|ZP_03670161.1| hypothetical protein LmonFR_04967 [Listeria monocytogenes FSL R2-561] Length = 757 Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats. Identities = 125/765 (16%), Positives = 261/765 (34%), Gaps = 79/765 (10%) Query: 34 GKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTF--------KDTF 85 W + + + ++K G GF ++P + DID ++ + + Sbjct: 48 RTWADFETALDSLEKYQFDGLGFYF---KKPYFGVDIDDIKDEIEDYLYGNTENIAGEFI 104 Query: 86 EILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTK 145 + L + +I +G++++ G++FV Sbjct: 105 QTLSSYTEYSVSGTGIHII-------AKGSFPEGGRRKGNIEMYPDGRFFVMTGQVIDN- 156 Query: 146 KEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQY 205 Y +V + + + + +P R Sbjct: 157 --YR--------QVNEATTAIQYLHTKYIGTNE-VRQINNLQSTVDLPVSDIIQRAERSK 205 Query: 206 TNREITAFLSCFGEEFYNGSHDEWIPVVMAVHH-----ETRGSSKGKEIARRWSKQGSTY 260 + ++G + +A + + K EI R + + Sbjct: 206 QGAQFKTLYDGL----WDGLYPSQSEADLAFANMLAFWTGCNAEKMDEIFRSSGLYRTKW 261 Query: 261 DEENFNYKWDTFDFEEIGDTAKK----RSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMF 316 D++ + + + S D N F Sbjct: 262 DQKRGAQLYGEMVINKAITNTSEIYQPGSELEGYSISIKNQNNTARKVYGLDDTGNAERF 321 Query: 317 SIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDN 376 ++ K +Y D +I + + + D+ E Sbjct: 322 RDKFHDIVRFSYINKGFYYYDSKVW---------KYDNIGAVKTLVDDVIKDMKSEFAYM 372 Query: 377 NKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGIL 436 + S + + + ++ + + EA + + D D FL Q+G + Sbjct: 373 DNESDAEKAFMKHLKATRSNKGKTNMLK-----EAQHLMPVLPDEFDRYKYFLNTQNGYI 427 Query: 437 DLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALL 495 +L+ G+ + ++ TK + + + + + + F +E++DY + VG +L Sbjct: 428 NLQNGELINHDRQKMFTKISNIEYTDKIDAPLWQAFLKDIFAGDKELIDYIQKAVGYSLS 487 Query: 496 GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIR 555 G Q + G G +GKS +++I FG+ + +++ ++ AN + R Sbjct: 488 GSTSEQVMFILFGNGRNGKSVFLDIINDIFGSYATNIQPQTIMVKQ---QSSNANSDIAR 544 Query: 556 LMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLF 615 L G+R V +E NE ++ +KQ+TGGD +TAR Y + + E F ++ N Sbjct: 545 LHGARFVTTTEPNEGVRLDEGLVKQLTGGDKVTARHLYKDEF-EFTPEFKIWMATNHKPI 603 Query: 616 VRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDV 673 +R DD WRR ++PF I + D KL W ++G + +GL Sbjct: 604 IRGRDDGIWRRLHLVPFTVKIPDEKVDKQLKYKL-RSELTGILNWAVEGFLKWQKEGL-- 660 Query: 674 DIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRI 733 +P+ A E + D A+I+DCCD+ E + + ++Y E+ ++ Y + Sbjct: 661 GMPKAVENASSEYKSEMDVITAFIEDCCDVREGEKVNAKKMYETYHEWAKENGQY---LM 717 Query: 734 STRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESV 778 S+ I + +K+ K+ + +G+ L + ++ Sbjct: 718 SSTKFGKE---------IGMKFTKKKTKTANVYEGITLNDDYYNL 753 >gi|16801649|ref|NP_471917.1| hypothetical protein lin2587 [Listeria innocua Clip11262] gi|16415124|emb|CAC97814.1| lin2587 [Listeria innocua Clip11262] Length = 757 Score = 391 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 125/782 (15%), Positives = 266/782 (34%), Gaps = 82/782 (10%) Query: 20 LIPLRLGDKR---PQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEK 76 IP+ + W + + + ++K G GF ++P + DID ++ Sbjct: 31 KIPMNANNGSYGNSVDERTWADFETALDSLEKYRFDGLGFYF---KKPYFGVDIDDIKDE 87 Query: 77 TANTF--------KDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDI 128 + + + L + +I +G++++ Sbjct: 88 IEDYLYGNTENIAGEFIQTLSSYTEYSVSGTGIHII-------AKGSFPEGGRRKGNIEM 140 Query: 129 LGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDK 188 G++FV Y +V + + + + Sbjct: 141 YPDGRFFVMTGQVIDN---YR--------QVNEATSAIQYLHTKYIGTNE-VRQINNLQS 188 Query: 189 KSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHH-----ETRGS 243 +P R + ++G + +A + + Sbjct: 189 TVDLPVSDIIQRAERSKQGAQFKTLYDGL----WDGLYPSQSEADLAFANMLAFWTGCNA 244 Query: 244 SKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKK----RSTFTSLFYHHGKLIP 299 K EI R + +D++ + + + S Sbjct: 245 EKMDEIFRSSGLYRTKWDQKRGAQLYGEMVINKAITNTSEIYQPGSELEGYSISIKNQNN 304 Query: 300 KGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFL 359 D N F ++ K +Y D +I Sbjct: 305 TARKVYGLDDTGNAERFRDKFHDIVRFSYINKGFYYYDSKVW---------KYDNIGAVK 355 Query: 360 VSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITS 419 + + + D+ E + S + + + ++ + + EA + + Sbjct: 356 TLVDDVIKDMKSEFAYMDNESDAEKAFMKHLKATRSNKGKTNMLK-----EAQHLMPVLP 410 Query: 420 DLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-E 478 + D FL Q+G ++L+ G+ + ++ TK + + + + + ++ F Sbjct: 411 EEFDRYKYFLNTQNGYINLQNGELINHDRQKMFTKISNIEYTDKIDAPLWQAFLNDIFAG 470 Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538 +E+++Y + VG +L G Q + G G +GKS +++I FG+ + + Sbjct: 471 DKELINYMQKAVGYSLSGSTSEQVMFILFGNGRNGKSVFLDIINDIFGSYATNIQPQTIM 530 Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598 ++ ++ AN + RL G+R V +E NE ++ +KQ+TGGD +TAR Y + + Sbjct: 531 VKQ---QSSNANSDIARLHGARFVTTTEPNEGVRLDEGLVKQLTGGDKVTARHLYKDEF- 586 Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAK 656 E F ++ N +R DD WRR ++PF I + D KL Sbjct: 587 EFTPEFKIWMATNHKPIIRGRDDGIWRRLHLVPFTVKIPDEKVDKQLKYKL-RSELTGIL 645 Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAK 716 W ++G + +GL +P+ A E + D A+I+DCCD+ E + + + Sbjct: 646 NWAVEGFLKWQKEGL--GMPKAVENASSEYKSEMDVITAFIEDCCDVREGEKVNAKKMYE 703 Query: 717 SYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFE 776 +Y E+ ++ Y +S+ I + +K+ K+ + +G+ L + Sbjct: 704 TYHEWAKENGQY---LMSSTKFGKE---------IGMKFTKKKTKTANVYEGITLNDDYY 751 Query: 777 SV 778 ++ Sbjct: 752 NL 753 >gi|331087335|ref|ZP_08336403.1| hypothetical protein HMPREF0987_02706 [Lachnospiraceae bacterium 9_1_43BFAA] gi|330408361|gb|EGG87836.1| hypothetical protein HMPREF0987_02706 [Lachnospiraceae bacterium 9_1_43BFAA] Length = 769 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 117/789 (14%), Positives = 250/789 (31%), Gaps = 67/789 (8%) Query: 6 WKEQAKQAIHNG-FKLIPLRLGDKR--PQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGE 62 WK + + NG +P ++ K+ + + ++ + G G Sbjct: 18 WKYEER----NGRITKVPYQINGKKASSADKNTFSDFRMAVNAMADYDGIGMGAF----- 68 Query: 63 QPLYAFDIDSK--DEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120 DID K + E + + ++ + K + Sbjct: 69 DDFCMVDIDHCVCGGKLTRMAEVIIEKMDSYTEISPSGTGVRIVCKASSLFYDKGRYYIN 128 Query: 121 STQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFK----------VEDTPLLSEEDV 170 +++ L+I G V T R + P + + Sbjct: 129 NSKIGLEIYAAG---VTKKFCTLTGNAIRNCGVEERSDQLGIILETYMLRSIPKEKDREQ 185 Query: 171 EYLFKFFQEITV--PLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDE 228 + + + +V ++ W ++ + L+ + G ++ Sbjct: 186 DIPGSYLSDGSVVRLASDSRQGRKFKSLWNGEIPEGKSHSDADMSLASILAFWCGGDVEQ 245 Query: 229 WIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKW-DTFDFEEIGDTAKKRSTF 287 + R S + R + GSTY +F T S F Sbjct: 246 -------MDRLFRKSGLMRSKWDRV-QSGSTYGALTLEKAVVQAVEFYRPYATTSAESDF 297 Query: 288 TSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLT 347 + + ++D + +F+ K Y + K WY ++ T Sbjct: 298 DDMLQKLVEWNVSDNRRYPWNDNGSGRLFADVYKDIARYVPERKKWY--------VYDGT 349 Query: 348 LDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQ 407 + + K L + + + + N+ Sbjct: 350 RWIPDIGGLKTMELAKSLADTLVRYALTIADERRRKDYLEYSAKWQSRNYRNTYI----- 404 Query: 408 SLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ 467 +A S++ I D + +L Q+G LDL+TG+ T + +TK G + S Sbjct: 405 -SDAQSVYPIAMSEFDRNIYYLNCQNGTLDLQTGEFHPHTPQDKLTKIAGAAYDPNAKSP 463 Query: 468 EFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRG-VGGSGKSTLMNLIKYAF 525 F+ +S +E + + +G L G + + G +GK TLM + Sbjct: 464 RFIRFISEVMSGDKEKARFMQKSLGYGLTGDTRYECMFFYYGATTRNGKGTLMESTLHVM 523 Query: 526 GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGD 585 G+ + + I + + RL G R ISE +N A+IK MTG D Sbjct: 524 GDYGLTVRPET-IAAKPSANSQNPTEDIARLAGIRFANISEPRRGLVLNEAQIKSMTGND 582 Query: 586 CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASF 643 + AR + N++ + F ++ N + + R ++IPFD+ ++ + Sbjct: 583 TLNARFLHENSF-DFKPQFKLYVNTNYLPAITDMTLFSSGRIVIIPFDRHFEEWEQEQNL 641 Query: 644 AQKLETKY-TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCD 702 + W ++G +G + P A + +D Q ++++ + Sbjct: 642 KAEFSKPEIASAILNWLIEGYTLLQEEG--FNQPTAVKDAIMSYQHDSDKMQLFVEEFLE 699 Query: 703 IGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKS 762 ++ + ++ ++Y + + +R L+ G + R++ + + Sbjct: 700 KEKDAECRTSAVYQAYRNWCNNNGYFAEN---SRNFNQALRTIGM---VVRKRPKDGGEK 753 Query: 763 KRIIKGLKL 771 ++ G +L Sbjct: 754 TTLLTGYRL 762 >gi|295402704|ref|ZP_06812647.1| phage/plasmid primase, P4 family [Geobacillus thermoglucosidasius C56-YS93] gi|294975276|gb|EFG50911.1| phage/plasmid primase, P4 family [Geobacillus thermoglucosidasius C56-YS93] Length = 832 Score = 390 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 120/642 (18%), Positives = 228/642 (35%), Gaps = 64/642 (9%) Query: 159 VEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREIT--AFLSC 216 ++ P +E L +E+ L + S + + F+ Sbjct: 203 LKINPECRYSLLE-LRDAIEEMEKSLSPEDTSWEQRDYGETHLPDAQVEPILKGCRFIQD 261 Query: 217 FGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKW------- 269 + + + +++EW MA ++I WSK Y E + K Sbjct: 262 YLQHKESTTYNEW----MAALSIGAYCENYEQICHDWSKGHPDYSEAETDRKIVEIRSKM 317 Query: 270 ---------DTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYK 320 D F K ++ SL + +D N Sbjct: 318 KPRTCRSIHDEFGTCNGCPYFGKINSPISLGMKKEHRTGTKKPSFMRTDLGNAERLVYRH 377 Query: 321 KGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNS 380 + Y +W+ IW K I E + ++ +E ++ ++S Sbjct: 378 GDNIRYCNVFGSWF--------IWDGQRWKEDK-INQIQELAAETIRNIYKEAQE-ERDS 427 Query: 381 KSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLET 440 + R ++ + S A+S + + LD +GI+DL T Sbjct: 428 DIRKTLTEHALRSESRGKIEAMISLAKSKVP-----VMPEELDQDIWLFNCANGIIDLRT 482 Query: 441 GQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESE------EVMDYFTRCVGMAL 494 G+ + ++ +TK + + ++ + E E++++ + VG +L Sbjct: 483 GELLPHDRKKLMTKISPVIYDPKAECPTWIKFLEDIMSDEKGNPKYELIEFLQKAVGYSL 542 Query: 495 LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLI 554 G Q + G G +GKST +N I+ G+ + ++ + + N + Sbjct: 543 TGDTSEQVLFFLYGTGRNGKSTFVNTIREILGDYGKQTNADTFTVKR----SDRVNNDIA 598 Query: 555 RLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHL 614 L G+R V +E+ E + + +KQ+TGG+ + AR Y + E F F N Sbjct: 599 ALKGARFVSATESEEGARLAESLVKQLTGGEAIQARFLYQENF-EYIPQFKIFFTTNHKP 657 Query: 615 FVRNPDDAWWRRYIVIPFDKPIAN--RDASFAQKLETKYTLEAKKWFLKGVKAYISKGLD 672 ++ D+ WRR +IPF I +D +KL +W ++G + +GL Sbjct: 658 VIKGSDEGIWRRIRLIPFTVTIPEEKKDTRLPEKL-KAEMPGILRWAVEGCLKWQREGLG 716 Query: 673 VDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKR 732 P+ +A E + D+ A+I DCC + E L +Y ++ ++ Y+ Sbjct: 717 --NPDEIKQATEGYKAEMDSLGAFIADCCVVNELAKCWGSDLYTAYQKWCDENGEYE--- 771 Query: 733 ISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPA 774 I R L+++GF K ++ G+ LK Sbjct: 772 IGKRKFNKRLEERGF-------KKKRGTGGAIEFLGIGLKTE 806 >gi|300766173|ref|ZP_07076138.1| phage/plasmid primase P4 [Listeria monocytogenes FSL N1-017] gi|300513131|gb|EFK40213.1| phage/plasmid primase P4 [Listeria monocytogenes FSL N1-017] Length = 757 Score = 389 bits (998), Expect = e-105, Method: Composition-based stats. Identities = 137/779 (17%), Positives = 264/779 (33%), Gaps = 82/779 (10%) Query: 20 LIPLRLGDKR---PQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKD-- 74 IP+ D W + + + + K G GF + P + DID Sbjct: 31 KIPMNANDGSYGNSVDERTWADFETALDSLTKYKFDGLGFYF---KAPYFGVDIDDIQDD 87 Query: 75 ------EKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDI 128 T N + + L + +I +G++++ Sbjct: 88 IQDYLYGNTENIAAEFIQTLSSYTEYSVSGNGIHII-------AKGNFPEGGRRKGNIEM 140 Query: 129 LGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDK 188 G++FV + KV + + +EI Sbjct: 141 YPDGRFFVMTGQVIN-----------NYSKVNEATSAIQYLHTKYIGA-KEIRQANHLQS 188 Query: 189 KSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHH-----ETRGS 243 +P+ + + + ++G + +A + Sbjct: 189 TVDLPANEIIQRATQSKQGSQFKT----LFDGLWDGLYPSQSEADLAFANMLAFWTGCDP 244 Query: 244 SKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKK----RSTFTSLFYHHGKLIP 299 K EI R + +D++ + + + S Sbjct: 245 EKMDEIFRSSGLYRTKWDQKRGAQLYGEMVINKAIANTSEVYQPGSDLEGYSITVKNQNR 304 Query: 300 KGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFL 359 D N F Y+ K +Y D +I Sbjct: 305 TARKVYGLDDTGNAERFRDKFHDIVRYSYINKGFYYYDSKVW---------KYDNIGAVK 355 Query: 360 VSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITS 419 + + + D+ E S + + + ++ + + EA + + Sbjct: 356 TLVDDVIKDMKSEFAYMESESDAEKAFMKHLKATRSNKGKTNMLK-----EAQHLMPVLP 410 Query: 420 DLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-E 478 + D FL Q+G ++L++G+ + ++ TK + + + + + + ++ F Sbjct: 411 EEFDRYKYFLNTQNGYINLQSGELLDHDRQKMFTKISNIEYTDKIDAPLWENFLNDIFAG 470 Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538 +E++ Y + VG +L G Q + G G +GKS +++I FG+ + + Sbjct: 471 DQELIHYIQKAVGYSLSGSTSEQVMFILFGNGRNGKSVFLDIINDIFGSYATNIQPQTIM 530 Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598 ++ ++ AN + RL G+R V +E NE ++ +KQ+TGGD +TAR Y + + Sbjct: 531 VKQ---QSSNANSDIARLHGARFVTTTEPNEGVRLDEGLVKQLTGGDKVTARHLYKDEF- 586 Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAK 656 E F ++ N +R DD WRR ++PF I + D KL Sbjct: 587 EFTPEFKIWMATNHKPIIRGRDDGIWRRLHLVPFTVKIPDEKVDKQLKYKL-RSELTGIL 645 Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAK 716 W ++G + +GL +P+ A E + D A+I+DCCD+GE + L + Sbjct: 646 NWAVEGFLKWQREGLG--MPKSVENASSEYKSEMDVITAFIEDCCDVGEKQEVDVKVLYE 703 Query: 717 SYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAF 775 +Y E+ + Y +S L G+K EK K+ S+R G+ L + Sbjct: 704 TYREWAKDNGQY---LMSNTKFGKEL-------GLKFEK--KKTNSRRKYIGVALNKEY 750 >gi|295399290|ref|ZP_06809272.1| phage/plasmid primase, P4 family [Geobacillus thermoglucosidasius C56-YS93] gi|294978756|gb|EFG54352.1| phage/plasmid primase, P4 family [Geobacillus thermoglucosidasius C56-YS93] Length = 765 Score = 387 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 126/761 (16%), Positives = 243/761 (31%), Gaps = 96/761 (12%) Query: 28 KRPQRLGKWEEQL---LSSEKIDKL--PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFK 82 KRP + W++ L+ +I G V DID ++ + FK Sbjct: 47 KRP-CMKGWQDLNRPGLTEREIRSWLRQKGWTGLVI---PDGYDCVDIDDRE-EGELIFK 101 Query: 83 DTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHL-DILGCGQ-YFVAYNI 140 G I FR + T G + D G+ V + Sbjct: 102 ALLRE--GYQFHAIQTVRGFQFFFRSTGAIKGQDATVLMAGGFVGDYRLSGRGQIVLPSE 159 Query: 141 HPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNN 200 + T W ++ P+ E ++ + K + ++P+ + ++ Sbjct: 160 N--TGGR-EWVH-IADKELSPMPIFFER-LKKIDKTQRPFSIPMHEGGRNNALYAHCCRL 214 Query: 201 NNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTY 260 YT +++ S F+ D+ R +S Sbjct: 215 VEFGYTPEQVSEIASFLNRYFFLPPLDQ----------------------REFSAIL--- 249 Query: 261 DEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYK 320 + + + + + + ++ N Sbjct: 250 -----------YSALKHEPSGTNYHSPPPMPFPA--RKEGEPRKFNLTEMGNAERLVARN 296 Query: 321 KGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNS 380 + Y + + W IW + ++ E N Sbjct: 297 GENLRYCVEFEEW--------LIWDGKTW-VEDKKKQIERIAIRTFREMYAEAAHEENND 347 Query: 381 KSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLET 440 ++ + A ++ I+ + L+ L +G++DL T Sbjct: 348 ARNELLRWAKASEKSSVFLNSI------ARAEAMLPISQEELNKDKFLLNCANGVVDLRT 401 Query: 441 GQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESE-----EVMDYFTRCVGMALL 495 G+ + +E +TK+T + ++ + F E++ + + +G AL Sbjct: 402 GELLPHAREYMMTKNTHVSYDPNAKCPTWMAFLESIFRDGDNVKYEIISFLQKAIGYALT 461 Query: 496 GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIR 555 G Q + G G +GKST +N IK G+ + + N + R Sbjct: 462 GDISEQVVFFLWGTGRNGKSTFINTIKALLGDYAKQTNSNTFTAK---MNDSGINNDIAR 518 Query: 556 LMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLF 615 L GSR V E+ + ++ + IKQ+TGG+ +TAR + E F F N Sbjct: 519 LHGSRFVSAMESEDGQRLSESLIKQLTGGEPITARFL-RKEFFEFVPEFKIFFTTNHKPI 577 Query: 616 VRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDV 673 ++ D+ WRR ++PF I D +KL +W ++G + +GL Sbjct: 578 IKGDDEGIWRRIRLVPFTYTIPKEQVDKHLPEKL-MNELPGILRWAVEGCLKWQKEGL-- 634 Query: 674 DIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRI 733 P+ A +E ++ D +++DCC I + + + L K Y ++ E+ + Sbjct: 635 GEPDEIKNATDEYKEEMDLLSNFLNDCCVIHPDAKVQLNELYKEYIDWCEENSEI---PM 691 Query: 734 STRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPA 774 + + L +GF K +K G+ L Sbjct: 692 KKQKFSARLVLRGFEK-------RKSTGNKTFFFGIGLSTE 725 >gi|217964665|ref|YP_002350343.1| phage/plasmid primase, P4 family [Listeria monocytogenes HCC23] gi|217333935|gb|ACK39729.1| phage/plasmid primase, P4 family [Listeria monocytogenes HCC23] gi|307570771|emb|CAR83950.1| bacteriophage primase [Listeria monocytogenes L99] Length = 762 Score = 384 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 134/779 (17%), Positives = 262/779 (33%), Gaps = 82/779 (10%) Query: 20 LIPLRLGDKR---PQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKD-- 74 IP+ D W + + ++K G GF + P + DID Sbjct: 31 KIPMNANDGSYGNSADERTWADFETALTSLNKYQFDGLGFYF---KAPYFGVDIDDIQDD 87 Query: 75 ------EKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDI 128 T N + + L + +I +G++++ Sbjct: 88 IQDYLYGNTENLAAEFIQTLSSYTEYSVSGTGIHII-------AKGNFPEGGRRKGNIEM 140 Query: 129 LGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDK 188 G++FV Y +V + + +EI Sbjct: 141 YPDGRFFVMTGQVINN---YR--------QVNEATSAIQYLHSKYIGS-KEIRQANHLQS 188 Query: 189 KSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHH-----ETRGS 243 +P+ + + ++G + +A + Sbjct: 189 TVDLPTNEIIQRAVQSKQGSQFKTLYDGL----WDGLYPSQSEADLAFANMLAFWTGCDP 244 Query: 244 SKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKK----RSTFTSLFYHHGKLIP 299 K EI R + +D++ + + + S Sbjct: 245 EKMDEIFRSSGLYRTKWDQKRGAQLYGEMVLNKAIANTSEVYQPGSDLEGYSITVKNQNR 304 Query: 300 KGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFL 359 D N F ++ K +Y D +I Sbjct: 305 TVRKVYGLDDTGNAERFRDKFHDIVRFSYINKGFYYYDSKVW---------KYDNIGAVK 355 Query: 360 VSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITS 419 + + + D+ E S + + + ++ + + EA + + Sbjct: 356 TLVDDVIKDMKSEFAYMESESDAEKAFMKHLKATRSNKGKTNMLK-----EAQHLMPVLP 410 Query: 420 DLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-E 478 + D FL Q+G ++L++G+ + ++ TK + + + + + + ++ F Sbjct: 411 EEFDRYKYFLNTQNGYINLQSGELLDHDRQKMFTKISNIEYTDKIDAPLWENFLNDIFAG 470 Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538 +E++ Y + VG +L G Q + G G +GKS +++I FG+ + + Sbjct: 471 DQELIHYIQKAVGYSLSGSTSEQVMFILFGNGRNGKSVFLDIINDIFGSYATNIQPQTIM 530 Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598 ++ ++ AN + RL G+R V +E NE ++ +KQ+TGGD +TAR Y + + Sbjct: 531 VKQ---QSSNANSDIARLHGARFVTTTEPNEGVRLDEGLVKQLTGGDKVTARHLYKDEF- 586 Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAK 656 E F ++ N +R DD WRR ++PF I + D KL Sbjct: 587 EFTPEFKIWMATNHKPIIRGRDDGIWRRLHLVPFTVKIPDEKVDKQLKYKL-RSELTGIL 645 Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAK 716 W ++G + +GL +P+ KA E + D A+I+DCC+ GEN + +L + Sbjct: 646 NWAVEGFLKWQREGLG--MPKAVEKASSEYKSEMDVITAFIEDCCETGENKQINAKTLYE 703 Query: 717 SYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAF 775 +Y E+ Y +S+ + G+K EK K + K + L + Sbjct: 704 TYREWARDNGQY---LMSSTKFGKEM-------GLKFEK--KRSNGQTAYKCITLNKEY 750 >gi|331091162|ref|ZP_08340004.1| hypothetical protein HMPREF9477_00647 [Lachnospiraceae bacterium 2_1_46FAA] gi|330405384|gb|EGG84920.1| hypothetical protein HMPREF9477_00647 [Lachnospiraceae bacterium 2_1_46FAA] Length = 769 Score = 382 bits (980), Expect = e-103, Method: Composition-based stats. Identities = 115/786 (14%), Positives = 253/786 (32%), Gaps = 61/786 (7%) Query: 6 WKEQAKQAIHNG-FKLIPLRLGDKR--PQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGE 62 WK + + NG +P ++ K+ + + ++ +D G G Sbjct: 18 WKYEER----NGRITKVPYQINGKKASSADKNTFSDFRMAVNAMDDYDGIGMGAF----- 68 Query: 63 QPLYAFDIDSK--DEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120 DID K ++ E + + ++ + K + Sbjct: 69 DDFCMVDIDHCVCGGKLTRMAENIIEKMDSYTEISPSGTGVRIVCKASSLFYDKGRYYIN 128 Query: 121 STQGHLDILG---CGQYFVAYNIHPKTKKEYTWTTPPHRF----KVEDTPLLSEEDVEYL 173 +++ L+I ++ + + + P + + + Sbjct: 129 NSKIGLEIYVSDVTKKFCTLTGNAIRNCGVEERSGQLGIILETYMLRPIPKEKDREQDIP 188 Query: 174 FKFFQEITV--PLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIP 231 + + +V ++ W ++ + L+ + G ++ Sbjct: 189 GSYLSDDSVVRLASDSRQGRKFKSLWNGEIPEGKSHSDADMSLASILAFWCGGDLEQ--- 245 Query: 232 VVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKW-DTFDFEEIGDTAKKRSTFTSL 290 + R S + R + GSTY +F T S F + Sbjct: 246 ----MDRLFRKSGLMRSKWDRV-QSGSTYGALTLEKAVAQAVEFYRPYATTSAESDFDDM 300 Query: 291 FYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDK 350 + ++D + +F+ K Y + K WY ++ T Sbjct: 301 LQKLVEWNVSDNRRYPWNDNGSGRLFADVYKDIARYVPERKKWY--------VYDGTRWI 352 Query: 351 ITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLE 410 + + K L + + + + N+ + Sbjct: 353 PDIGGLKTMELAKSLADTLVRYALTIADERRRKDYLEYSAKWQSRNYRNTYI------SD 406 Query: 411 AGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFL 470 A S++ I D + +L Q+G LDL+TG+ T + +TK G + S F+ Sbjct: 407 AQSVYPIAMSEFDRNIYYLNCQNGTLDLQTGEFHLHTPQDKLTKIAGAAYDPNAKSPRFI 466 Query: 471 DLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRG-VGGSGKSTLMNLIKYAFGNQ 528 +S +E + + + +G L G + + G +GK TLM + G+ Sbjct: 467 RFISEVMSGDKEKVRFMQKSLGYGLTGDTRYECMFFYYGATTRNGKGTLMESTLHVMGDY 526 Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588 + + I + + RL G R ISE +N A+IK MTG D + Sbjct: 527 GLTVRPET-IAAKPSVNSQNPTEDIARLAGIRFANISEPRRGLVLNEAQIKSMTGNDTLN 585 Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQK 646 AR + N++ + F ++ N + + R ++IPFD+ ++ + + Sbjct: 586 ARFLHENSF-DFKPQFKLYVNTNYLPAITDMTLFSSGRIVIIPFDRRFEEWEQEQNLKAE 644 Query: 647 LETKY-TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE 705 W ++G +G D P A + +D Q ++++ + + Sbjct: 645 FSKPEIASAILNWLIEGYTLLQEEG--FDQPTAVKDAILSYQHDSDKMQLFVEEFLEKEK 702 Query: 706 NLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRI 765 + + ++ ++Y + + +R L+ G + R++ + + + Sbjct: 703 DAECRTSAVYQAYRNWCNNNGYFAEN---SRNFNQALRTIGM---VVRKRPKDGGEKTTL 756 Query: 766 IKGLKL 771 + G +L Sbjct: 757 LTGYRL 762 >gi|223044345|ref|ZP_03614380.1| primase [Staphylococcus capitis SK14] gi|222442313|gb|EEE48423.1| primase [Staphylococcus capitis SK14] Length = 768 Score = 382 bits (980), Expect = e-103, Method: Composition-based stats. Identities = 146/775 (18%), Positives = 264/775 (34%), Gaps = 76/775 (9%) Query: 1 MPVMQWKEQAKQAIHNGF-KLIPLRLGDK---RPQRLGKWEEQLLSSEKIDKLPACGFGF 56 M W + NG P+ + W + + E G GF Sbjct: 10 MERDTWVCWKIEETANGRKTKRPINPNTGSYAKSNDSSTWSDYETAVEMSKNF--DGIGF 67 Query: 57 VCGVGEQPLYAFDIDSKDEKTANTFKDT-FEILHGTPIVR------IGQKPKILIPFRMN 109 + G ++ DID +++ + + + G I I K + Sbjct: 68 MLG---DGIFGIDIDGVEKEIQEYLANEDVDNIVGEFIETMESYAEISPSGKGIHILVK- 123 Query: 110 KEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEED 169 + +G++++ ++ KE + + Sbjct: 124 ----GELPKGGRRRGNVEMYEELRFLTFTGFRIGRFKEIAVDEMGKINYLHN-------- 171 Query: 170 VEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGS---- 225 + I P + K+ T + + + + + + G Sbjct: 172 --------KYIAQPESETKQINTTKGTGNDLSAEELIDIAKKSKNGLRFTTLFEGDWTQF 223 Query: 226 HDEWIPVVMAVHH-----ETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDT 280 +D MA + R +SK +I R+ + +DE + D+ Sbjct: 224 YDSQSEADMAFANDLAFWTARDASKMDDIFRKSNLYRDKWDEMRGKDTYGNITINNAIDS 283 Query: 281 AKKR-------STFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAW 333 + F K + D N Y +K W Sbjct: 284 CTNEFIPEKTENDFQIFIMDDAVKPVKKDKRYSYDDTGNAERLKDRFGSFIRYNYTSKNW 343 Query: 334 YKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR 393 D I K + + + L E + + R Sbjct: 344 MFYDSKRWRIDDAGKMK---------GLVDKVIAGLKNEKISGSYDGYDTEEIKKFRTRH 394 Query: 394 QNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYIT 453 N K E + I + + DS Q+G +DL TGQ ++ K + T Sbjct: 395 WKDSRNHNKKENMLK-ECQHLLPIHNHVFDSDFTLFNTQNGYIDLNTGQLLEHDKNKFFT 453 Query: 454 KSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGS 512 K + + + ++ D ++ F ++E++ + RCVG +L G Q + G G + Sbjct: 454 KISKCEYTDNADCPKWEDFLNDIFLGNQELIKFIQRCVGYSLSGYTSEQVLFVLLGNGRN 513 Query: 513 GKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDE 572 GKS ++++ FGN + + N+ A+P + +L G+R V +E NE D Sbjct: 514 GKSVFLDIMNEVFGNYATNIRPQAIMANNQK---SDASPEIAKLDGARFVTTTEPNEGDR 570 Query: 573 INAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF 632 + IKQ+TGGD +TAR Y N + E ++ N +VR D+ WRR+++IPF Sbjct: 571 FDEGLIKQLTGGDKVTARKLYENEF-EFVPQLKLWMATNHKPYVRGTDEGIWRRFVIIPF 629 Query: 633 DKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGT 690 DK I D KL K KW ++G + GL P+ ++E R Sbjct: 630 DKQIPLKEVDRDLTNKL-KKELPAIMKWCVEGYLEWQKIGL--SEPQSVKAQRDEYRTEM 686 Query: 691 DTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK 745 D+ + ++ D C++GE + + L K+Y + Y R+S+R +++K Sbjct: 687 DSTELFLRDVCEMGETKFIRTSHLYKAYDIWARDNHQY---RMSSRKFRNEMEKK 738 >gi|291536672|emb|CBL09784.1| phage/plasmid primase, P4 family, C-terminal domain [Roseburia intestinalis M50/1] Length = 769 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 115/786 (14%), Positives = 242/786 (30%), Gaps = 61/786 (7%) Query: 6 WKEQAKQAIHNG-FKLIPLRLGDKR--PQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGE 62 WK + + NG +P + ++ + + L+ +D G G Sbjct: 18 WKYEER----NGRMTKVPYQTNGRKASSADKNTFSDFRLAVSAMDGYDGIGMGAF----- 68 Query: 63 QPLYAFDIDSK--DEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120 DID K +D E + ++ + + Sbjct: 69 DDFCMVDIDHCVFGGKMTQMAEDIVERMDSYTEFSPSGTGVRIVCKASSLSYDTGRYYIN 128 Query: 121 STQGHLDILGCG---QYFVAYNIHPKT----KKEYTWTTPPHRFKVEDTPLLSEEDVEYL 173 + + L+I G ++ + ++ + + + + Sbjct: 129 NQKLGLEIYAAGVTKKFCTLTGNVIRNRGVEERSTEIGEILEIYMLRPISKKKNDVQDIP 188 Query: 174 FKFFQEITV--PLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIP 231 + + +V ++ W ++ + L+ + G Sbjct: 189 GSYLSDDSVVRLASDSRQGEKFKALWNGEIPEGKSHSDADMSLASILAFWCGGD------ 242 Query: 232 VVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKW-DTFDFEEIGDTAKKRSTFTSL 290 + R S + R + GSTY DF S F + Sbjct: 243 -TGQMDRLFRKSGLMRSKWDRV-QSGSTYGALTMEKAVAQALDFYRPYARTSAESDFDDM 300 Query: 291 FYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDK 350 +L ++D + +F+ K Y + K WY ++ T Sbjct: 301 LQKLIELNVSDNSRYPWNDNGSGRLFADVYKDIARYVPERKKWY--------VYDGTRWI 352 Query: 351 ITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLE 410 + + K L + + + N+ + Sbjct: 353 PDIGGLKTMELAKSLADSLVRYALTITDERIRKDYLEYSAKWQSRNYRNTYI------SD 406 Query: 411 AGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFL 470 A S++ I D + +L Q+G LDL+TG+ T + +TK G + + F Sbjct: 407 AQSVYPIAMSEFDCNVYYLNCQNGTLDLQTGEFHPHTPQDKLTKIAGAAYDPNAKNPRFT 466 Query: 471 DLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRG-VGGSGKSTLMNLIKYAFGNQ 528 VS E + + +G L G + + G +GK TLM + G+ Sbjct: 467 RFVSEVMSGDTEKARFMQKSLGYGLTGDTRYECMFFYYGATTRNGKGTLMESTLHVMGDY 526 Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588 + + I + + RL G R ISE +N A+IK MTG D + Sbjct: 527 GLTVRPET-IAAKPSANSQNPTEDIARLAGVRFANISEPRRGLVLNEAQIKSMTGNDTLN 585 Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQK 646 AR + N++ + F ++ N + + R ++IPFD+ ++ + + Sbjct: 586 ARFLHENSF-DFKPQFKLYVNTNYLPAITDMTLFSSGRVVIIPFDRHFEEWEQEQNLKAE 644 Query: 647 LETKY-TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE 705 W ++G +G P+ A + +D + ++++ + + Sbjct: 645 FSRPEAASAILNWLIEGYTILKEEG--FAQPKAVKDATMSYQHDSDKMELFVEEFLEQEK 702 Query: 706 NLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRI 765 + + ++ ++Y + + +R L+ G I R + + + Sbjct: 703 DAECRTSAVYQAYRNWCNDNGYFAEN---SRNFNQALRTIG---TIVRRRPRDGGEKTTL 756 Query: 766 IKGLKL 771 + G +L Sbjct: 757 LTGYRL 762 >gi|327439461|dbj|BAK15826.1| predicted ATPase [Solibacillus silvestris StLB046] Length = 796 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 150/833 (18%), Positives = 280/833 (33%), Gaps = 110/833 (13%) Query: 6 WKEQAKQAIHNG-FKLIPLRLG------DKRPQRLGKWEEQLLSSEKIDKLPACGFGFVC 58 W + NG F IP + + R W +++ A G GFV Sbjct: 21 WILWKAEKKENGKFTKIPYQADPLAQGAEARANDPRTWSTFATAAKIYTNSNADGIGFVF 80 Query: 59 GVGEQPLYAFDIDS-----------KDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFR 107 DID ++ ++ K+ E+L + + I + Sbjct: 81 -SRRDSFVGIDIDHCVTYAADDENRENPIISDFAKEVIEMLDSYTEFSVSGTG-VHIIVK 138 Query: 108 MNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSE 167 + ++++ L+I +YF I R + ++ Sbjct: 139 GSLPQSVCGTGRKNSKLGLEIYQHTRYFTMTGI---------------RENSNEIIERTD 183 Query: 168 EDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSH- 226 E VE+L K+F + + K K +N Q R + +NG+ Sbjct: 184 ELVEFLDKYFDDSD-LQGRLVKLQDYEKDEVKLSNEQLWERMFRSKAGDEIRSMFNGNLI 242 Query: 227 -DEWIPVVMAVHH---------------ETRGSSKGKEIARR--WSKQGSTYDEENFNYK 268 ++ +A+ + R ++ + R + G TY E Sbjct: 243 NNDRSSTDIALCNHLAFWTGKSATRMDVMMRETALMRPKWDRITYGDTGETYGERTIAKA 302 Query: 269 WDTFDFEEIGDTAKKRSTFTSLFYHHGKLIP----KGLLASRFSDAYNKAMFSIYKKGHF 324 + + + + + K R ++ N + Sbjct: 303 ITSTTTTVLDHKHEIEYAEFDVSSTVEAVDDGEEVKPKKKFRLNELGNAERIAYEYGHVI 362 Query: 325 LYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPR 384 + ++ +W K + ++ + E E ++ + Sbjct: 363 RFVSEIG---------WMLWDGKRWKYDNK-----LQIERIANKVLRELEKSDDEME--- 405 Query: 385 FWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKV 444 + R + N + S + + + D +GILDL TG+ Sbjct: 406 ----VRWARSCGKRNIRMNSIK---DLMPLVPAEREEFDKHKFLFNCSNGILDLRTGKLQ 458 Query: 445 KPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRF 503 + ++L ++K F + +L+ + F EE++DY R +G ++ G Q Sbjct: 459 QHDRDLRLSKLANVEFDDNAKCPTWLNFLQQIFKGDEELIDYMQRLIGYSMTGDISEQGM 518 Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVI 563 + G G +GKST +N+IK G+ + + I + AN + RL+GSR V Sbjct: 519 YFLVGGGSNGKSTFINIIKAMMGDYGLQTKSDTFIKKKN----DGANNDIARLVGSRFVS 574 Query: 564 ISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAW 623 E+ E +++ + +K +TGG+ + AR + E F F N + D+ Sbjct: 575 AVESEEGEKLQESLVKTITGGEPILARFL-RQEFFEFTPEFKVFFTTNHKPIIGGVDEGI 633 Query: 624 WRRYIVIPF--DKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLK 681 WRR +IPF + RD +KL W ++G + GL P+V + Sbjct: 634 WRRVKIIPFTLNLAPHQRDKKLEEKLTL-EMSGILNWAIEGCLKWQQSGLK--EPKVVVD 690 Query: 682 AKEEERQGTDTYQAWIDDCCDIGE---NLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738 A ++ D ++++ C + N E+ L YS + + IS R+ Sbjct: 691 ATGNYKEEMDILGPFLEERCYMNPKDTNTKIEAKELYNIYSNWCYAAGE---RSISNRSF 747 Query: 739 TLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL---KPAFESVDDNSNIIDFK 788 L+ KGF K +K + G+ + KP E V +N FK Sbjct: 748 YRMLETKGFGK-------SKGAGNKMYLVGITISERKPVTEPVIENEKTGGFK 793 >gi|197303471|ref|ZP_03168510.1| hypothetical protein RUMLAC_02193 [Ruminococcus lactaris ATCC 29176] gi|197297469|gb|EDY32030.1| hypothetical protein RUMLAC_02193 [Ruminococcus lactaris ATCC 29176] Length = 769 Score = 381 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 113/786 (14%), Positives = 242/786 (30%), Gaps = 61/786 (7%) Query: 6 WKEQAKQAIHNG-FKLIPLRLGDKR--PQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGE 62 WK + + NG +P + ++ + + L+ +D G G Sbjct: 18 WKYEER----NGRMTKVPYQTNGRKASSADKNTFSDFRLAVSAMDGYDGIGMGAF----- 68 Query: 63 QPLYAFDIDSK--DEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120 DID K +D E + ++ + + Sbjct: 69 DDFCMVDIDHCVFGGKMTQMAEDIVERMDSYTEFSPSGTGVRIVCKASSLSYDTGRYYIN 128 Query: 121 STQGHLDILGCG---QYFVAYNIHPKT----KKEYTWTTPPHRFKVEDTPLLSEEDVEYL 173 + + L+I G ++ + ++ + + + + Sbjct: 129 NQKLGLEIYAAGVTKKFCTLTGNVIRNRGVEERSTEIGEILEIYMLRPISKKKNDVQDIP 188 Query: 174 FKFFQEITV--PLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIP 231 + + +V ++ W ++ + L+ + G Sbjct: 189 GSYLSDDSVVRLASDSRQGEKFKALWNGEIPEGKSHSDADMSLASILAFWCGGD------ 242 Query: 232 VVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKW-DTFDFEEIGDTAKKRSTFTSL 290 + R S + R + GSTY DF S F + Sbjct: 243 -TGQMDRLFRKSGLMRSKWDRV-QSGSTYGALTMEKAVAQALDFYRPYARTSAESDFDDM 300 Query: 291 FYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDK 350 +L ++D + +F+ K Y + K WY ++ T Sbjct: 301 LQKLIELNVSDNSRYPWNDNGSGRLFADVYKDIARYVPERKKWY--------VYDGTRWI 352 Query: 351 ITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLE 410 + + K L + + + N+ + Sbjct: 353 PDIGGLKTMELAKSLADSLVRYALTITDERIRKDYLEYSAKWQSRNYRNTYI------SD 406 Query: 411 AGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFL 470 A S++ I D + +L Q+G LDL+TG+ T + +TK G + + F Sbjct: 407 AQSVYPIAMSEFDRNVYYLNCQNGTLDLQTGEFHPHTPQDKLTKIAGAAYDPNAKNPRFT 466 Query: 471 DLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRG-VGGSGKSTLMNLIKYAFGNQ 528 VS E + + +G L G + + G +GK TLM + G+ Sbjct: 467 RFVSEVMSGDTEKARFMQKSLGYGLTGDTRYECMFFYYGATTRNGKGTLMESTLHVMGDY 526 Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588 + + I + + RL G R ISE +N A+IK MTG D + Sbjct: 527 GLTVRPET-IAAKPSANSQNPTEDIARLAGVRFANISEPRRGLVLNEAQIKSMTGNDTLN 585 Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQK 646 AR + N++ + F ++ N + + R ++I FD+ ++ + + Sbjct: 586 ARFLHENSF-DFKPQFKLYVNANYLPAITDMTLFSSGRIVIILFDRHFEEWEQEQNLKAE 644 Query: 647 LETKY-TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE 705 W ++G +G P+ A + +D + ++++ + + Sbjct: 645 FSRPEAASAILNWLIEGYTLLQEEG--FAQPKAVKDATMSYQHDSDKMELFVEEFLEQEK 702 Query: 706 NLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRI 765 + + ++ ++Y + + +R L+ G + R++ + + Sbjct: 703 DAECRTSAVYQAYRNWCNDNGYFAEN---SRNFNQALRTIG---TVVRKRPRNGGEKTTL 756 Query: 766 IKGLKL 771 + G +L Sbjct: 757 LTGYRL 762 >gi|254560380|ref|YP_003067475.1| P4 family phage/plasmid primase [Methylobacterium extorquens DM4] gi|254267658|emb|CAX23504.1| putative P4 family phage/plasmid primase [Methylobacterium extorquens DM4] Length = 743 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 136/776 (17%), Positives = 245/776 (31%), Gaps = 83/776 (10%) Query: 12 QAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKID---KLPAC-GFGFVCGVGEQPLYA 67 I G+ + L+ K P +L W L E I+ P G G + Sbjct: 35 TYIECGYDITVLKPRTKEP-KLKNWTGITLEIEDIEAHGTFPEHYNIGIKLGSASDGIVD 93 Query: 68 FDIDSKDEKTANTFKDTFEILHGTPIVRIGQK--PKILIPFRM-NKEGIKKKKTTESTQG 124 D+D + L T G+ P +R+ + K K S + Sbjct: 94 VDLDC------DAAVSLGAKLLNTETRVFGRDDNPASHYMYRVFDPHSTVKFKHPISRKM 147 Query: 125 HLDILGCGQYFVAYNIH--PKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITV 182 +++ G G V T + + P ++ L + + F + Sbjct: 148 IVELRGNGSQTVLPGSIYKDGTDIRFEDYSLPEPLNIDWETLKRQCGLIAAGTVFSQF-- 205 Query: 183 PLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRG 242 ++ + ++ ++Q + T + + + I + A + + Sbjct: 206 -WIEGSRHLLALALGGWAAHKQIDQKTFTQLIEAVAVYASDDDVADRIDCIRASYAKFEA 264 Query: 243 SSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGL 302 K D + + ++ + + Sbjct: 265 GG----------KTAWKDDLNECIADGRIMNAVADWLMVGREPEQEAVLKQSKRPLSATS 314 Query: 303 LASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSM 362 D F Y ++ D + +Y + + + L + Sbjct: 315 DLQSGKD------FCAYVGDSLIFCDDQEQFYHRQNDVYEPVT-------------LAHV 355 Query: 363 KEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLL 422 KE V D + + N + R + ++S + + Sbjct: 356 KETVMDYVGSLDVDRTNFEEMRKLKAAQSVGRINAIVDVSRSILRISSSK---------F 406 Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEE 481 D+ G ++G+LDL TG+ V+ + +T+ GT + FL + F +E Sbjct: 407 DTDPFLAGCKNGVLDLRTGELVE--PDCIVTRRLGTNYDSDAWCHLFLTFMHQVFEGDQE 464 Query: 482 VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQN 541 + + R VG L G Q + G G +GKST + +I+ G S + Sbjct: 465 KIAFVRRAVGYTLTGSTAGQCMFLVIGTGANGKSTFLKVIQALMGEYGGSIPSHSMMASK 524 Query: 542 RPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESP 601 + L G R V SE ++ AK+K MTGGD + R YG Y + Sbjct: 525 FG---NDKTDDIASLDGRRFVSASEGEMGQKLAVAKVKLMTGGDTIACRPLYGK-YFDMK 580 Query: 602 ASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDASFAQKLETKYTLEAKKWF 659 F + N + D+A WRR VI F RD +L+ W Sbjct: 581 PEFKIWFGTNDLPVIAGGDEAIWRRLYVIDFPVSFTEAQRDGGLFDRLKL-ELPGILNWA 639 Query: 660 LKGVKAYISKGLD---VDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAK 716 L+GV+ G+ ++ P R +DT ++I+ CD E + L + Sbjct: 640 LQGVREL--GGMKSNFLNPPASVRNETNRYRSDSDTVASFIEAGCDRVEGAVVMMNVLHE 697 Query: 717 SYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLK 772 +Y+ + + +S+ L + GF K K G+KLK Sbjct: 698 TYTRWCN---TSGVEPLSSGLFGKELNRLGFQV--------KRKKEGNGRLGIKLK 742 >gi|281419026|ref|ZP_06250043.1| phage/plasmid primase, P4 family [Clostridium thermocellum JW20] gi|281407175|gb|EFB37436.1| phage/plasmid primase, P4 family [Clostridium thermocellum JW20] Length = 749 Score = 379 bits (973), Expect = e-103, Method: Composition-based stats. Identities = 131/793 (16%), Positives = 250/793 (31%), Gaps = 71/793 (8%) Query: 5 QWKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQP 64 QW N P+ + R W + + G GF Sbjct: 16 QWVCH-----RNKIPFNPITGAPAKAGRPDTWARFEDVVKACENGSYEGIGFEF--NNNG 68 Query: 65 LYAFDIDSKDEKTANTFKDTFEI--LHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTEST 122 + D+D + + EI + G+ K L F Sbjct: 69 IVGIDLDKVIAEDGTVSTEAAEIVAMLGSYTEYSP-SGKGLHIFVK-----GDIPVDGRK 122 Query: 123 QGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITV 182 +G +++ +YF T Y P + +E+ + K+F + Sbjct: 123 KGFIEMYKAKRYFT------MTGNVYGALNPIN--------ERTEQVKQIFNKYFSDSKS 168 Query: 183 PLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNG-----SHDEWIPVVMAVH 237 + T N + + F + + E+ + S + + ++ Sbjct: 169 KNFVVNIVNNNAATEPNKDYLSIGLAKDAVFKALWNGEYQSEKCTSESEADLALMGKLLY 228 Query: 238 HETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKL 297 + E + D+ + + ++ + Sbjct: 229 WCSGNIDAAIEAFIKSPYVAGKDDKHTTKLGRSDYLQRTAVKAMQGLTSTAAGDDEQY-- 286 Query: 298 IPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMN 357 D N ++ +WY W + + Sbjct: 287 --CKQQEFTLDDMGNARRLVAMCGNSIRFSYIKNSWY--------CWDGKVWLEDETGA- 335 Query: 358 FLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSI 417 V + E + K + + R K+ + + + Sbjct: 336 INRLADNTVEAMYTEAIKLTEQDKRDKLLKHAAKTRSIAGR----KAMIEGAKHLEGIPV 391 Query: 418 TSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF 477 D L Q+G+LDL++ + + IT+ + + +LD + Sbjct: 392 IPADFDKDVWLLNLQNGVLDLKSDKLYPHNPDYMITQISNASYNPSAKCPRWLDYLDKVT 451 Query: 478 -ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEAS 536 + ++M Y + VG +L G + + G G +GK T + + G+ S Sbjct: 452 DGNADLMKYMQKAVGYSLTGITGEECLFILYGTGRNGKGTFAETLIHLLGSYAKTAQVDS 511 Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNT 596 +++N ANP + RL G+R+V +E +N +N + IKQ+TGGD +TAR YG Sbjct: 512 LMLKN--VSGSGANPDIARLKGARVVNAAEPQKNSRLNESLIKQLTGGDMVTARFLYGKE 569 Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLE 654 + E F +I N + D+ W R ++PF RD L K Sbjct: 570 F-EYRPEFKLWINTNYKPQISGNDEGIWSRVKLLPFTVYFPPEKRDPHLKDFLREKEIDG 628 Query: 655 AKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714 W L+G+K + +GL ++PE A + R D Q ++DDC N + L Sbjct: 629 ILNWALEGLKLWQKEGL--EMPETMKLATTDYRCEMDIMQKFLDDCTKPKNNSSVGALDL 686 Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPA 774 K Y+ + + Y +S ++ R ++ ++ + ++L Sbjct: 687 YKVYTHWCSENGEY---VLSNTKFGRDM---------NRYLNKRNCRTGVVYLNIELTKP 734 Query: 775 FESVDDNSNIIDF 787 +E+ + IDF Sbjct: 735 YENAKQDFEEIDF 747 >gi|212638627|ref|YP_002315147.1| phage associated DNA primase [Anoxybacillus flavithermus WK1] gi|212560107|gb|ACJ33162.1| Phage associated DNA primase [Anoxybacillus flavithermus WK1] Length = 765 Score = 379 bits (973), Expect = e-102, Method: Composition-based stats. Identities = 122/758 (16%), Positives = 242/758 (31%), Gaps = 96/758 (12%) Query: 28 KRPQRLGKWEEQLL---SSEKIDKL--PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFK 82 KRP + W++ + +I G V DID + + F Sbjct: 47 KRP-CMKGWQDLNRPGMTEGEIRSWLRQKGWTGLVI---PDGYDVIDID-EQTEGELIFN 101 Query: 83 DTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHL-DILGCGQ-YFVAYNI 140 + +R + FR + + T G + D G+ V + Sbjct: 102 ALLREEYKFHAIRTIR--GFQFFFRSTGKIKGQDATVLMAGGFVGDYRLSGRGQVVLPSE 159 Query: 141 HPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNN 200 + T W ++ P + E ++ + K + +P+ + ++ Sbjct: 160 N--TGGR-EWVHIADG-ELSPMP-IYFERLKKIDKAQRPFPIPMHEGGRNNAMYAHCCRL 214 Query: 201 NNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTY 260 YT ++ S F+ Sbjct: 215 VEFGYTQEQVHEIASFLNRYFFL----------------------------------PPL 240 Query: 261 DEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYK 320 D+ F ++ + + S+ + + K + ++ N Sbjct: 241 DQREFANTINS--ALKHEPSGTNYSSPSPMISPERKEGEQK--KFNLTEMGNAERLVARN 296 Query: 321 KGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNS 380 + Y + + W IW + ++ E N Sbjct: 297 GQNLRYCVEFEEW--------LIWDGKTW-VEDKKKKIERIAIRTFREMYAEAAKEENND 347 Query: 381 KSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLET 440 ++ + A ++ I+ + L+ L +G++DL T Sbjct: 348 ARNELLKWAKASEKSSVFLNSI------ARAEAMLPISQEELNKDKFLLNCANGVVDLRT 401 Query: 441 GQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFES-----EEVMDYFTRCVGMALL 495 G+ + +E +TK+T P+ ++ + F ++++++ + +G L Sbjct: 402 GELLPHAREYMMTKNTHIPYDPNAKCPTWIAFLESIFRDGGDVKQDIINFLQKAIGYTLT 461 Query: 496 GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIR 555 G Q + G G +GKST +N +K G+ + + N + R Sbjct: 462 GDISEQVVFFLWGTGRNGKSTFINTVKALLGDYAKQTNSNTFTAK---MNDSGINNDIAR 518 Query: 556 LMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLF 615 L GSR V E+ + ++ + IKQ+TGG+ +TAR + E F F N Sbjct: 519 LHGSRFVSAVESEDGQRLSESLIKQLTGGEPITARFL-RKEFFEFVPEFKIFFTTNHKPI 577 Query: 616 VRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDV 673 ++ D+ WRR ++PF I D +KL +W ++G + +GL Sbjct: 578 IKGDDEGIWRRIRLVPFTYTIPKEQVDKHLPEKL-MNELPGILRWAVEGCLKWQKEGL-- 634 Query: 674 DIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRI 733 P+ A E + D +++DCC I + + L K Y ++ E+ + Sbjct: 635 GEPDEIKNATSEYKDEMDLLSNFLNDCCVIHPGAKVQLNELYKEYIDWCEENSEIA---M 691 Query: 734 STRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771 + + L +GF K +K G+ L Sbjct: 692 KKQKFSARLVLRGFEK-------RKSTGNKTFFFGIGL 722 >gi|17488555|ref|NP_511033.1| primase [Listeria phage 2389] gi|17402460|emb|CAC85608.1| primase [Listeria phage PSA] gi|332311652|gb|EGJ24747.1| Primase [Listeria monocytogenes str. Scott A] Length = 757 Score = 378 bits (971), Expect = e-102, Method: Composition-based stats. Identities = 127/782 (16%), Positives = 261/782 (33%), Gaps = 82/782 (10%) Query: 20 LIPLRLGDKR---PQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKD-- 74 IP+ W + + ++K G GF + P + DID Sbjct: 31 KIPMNANTGAYGNSVDERTWADFETALASLEKYQFDGLGFYF---KAPYFGVDIDDIKDD 87 Query: 75 ------EKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDI 128 T N + + L + +I +G++++ Sbjct: 88 IQDYLYGNTENIAGEFIQTLSSYTEYSVSGTGIHII-------AKGNFPEGGRRKGNIEM 140 Query: 129 LGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDK 188 G++FV Y +V + + + Sbjct: 141 YPDGRFFVMTGQVIDN---YR--------QVNEATAAIQYLHTKYIGTNEVK-QTNNLQS 188 Query: 189 KSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHH-----ETRGS 243 +P R + + ++G + +A + + Sbjct: 189 TVDLPVNDIIQRAERSKQGAQFKT----LFDGLWDGLYPSQSEADLAFANMLAFWTGCSA 244 Query: 244 SKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKK----RSTFTSLFYHHGKLIP 299 K EI R + +D++ + + + S Sbjct: 245 EKMDEIFRSSGLYRTKWDQKRGAQLYGEMVINKAITNTSEIYQPGSDLEGYSISIKNQNN 304 Query: 300 KGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFL 359 D N F ++ K +Y D +I Sbjct: 305 TARKVYGLDDTGNAERFRDKFHDIVRFSYINKGFYYYDSKVW---------KYDNIGAVK 355 Query: 360 VSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITS 419 + + + D+ E + S + + + ++ + + EA + + Sbjct: 356 TLVDDVIKDMKSEFAYMDNESDAEKAFMKHLKATRSNKGKTNMLK-----EAQHLMPVLP 410 Query: 420 DLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-E 478 + D FL Q+G ++L+ G+ + ++ TK + + + + + + + F Sbjct: 411 EEFDRYKYFLNTQNGYINLQNGELINHDRQKMFTKISNIEYTDKIDAPLWQEFLKDIFAG 470 Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538 +E+++Y + VG +L G Q + G G +GKS +++I FG+ + + Sbjct: 471 DKELINYIQKAVGYSLSGSTSEQVMFILFGNGRNGKSVFLDIINDIFGSYATNIQPQTIM 530 Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598 ++ ++ AN + RL G+R V +E NE ++ +KQ+TGGD +TAR Y + Sbjct: 531 VKQ---QSSNANSDIARLHGARFVTTTEPNEGVRLDEGLVKQLTGGDKVTARHLYKAEF- 586 Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAK 656 E F ++ N +R DD WRR ++PF I + D KL + Sbjct: 587 EFTPEFKIWMATNHKPIIRGRDDGIWRRLHLVPFTVKIPDEKVDKQLKYKL-RRELTGIL 645 Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAK 716 W ++G + +GL +P A E + D A+I+DCCD+ E + + + Sbjct: 646 NWAVEGFLKWQREGLG--MPGAVENASSEYKSEMDVITAFIEDCCDVREGEKVNAKKMYE 703 Query: 717 SYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFE 776 +Y E+ ++ Y +S+ I + +K+ K+ + +G+ L + Sbjct: 704 TYHEWAKENGQY---LMSSTKFGKE---------IGMKFTKKKTKTANVYEGITLNDDYY 751 Query: 777 SV 778 ++ Sbjct: 752 NL 753 >gi|157325276|ref|YP_001468699.1| gp60 [Listeria phage B025] gi|66733282|gb|AAY53099.1| gp60 [Listeria phage B025] Length = 757 Score = 378 bits (971), Expect = e-102, Method: Composition-based stats. Identities = 128/782 (16%), Positives = 263/782 (33%), Gaps = 82/782 (10%) Query: 20 LIPLRLGDKR---PQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKD-- 74 IP+ D W + + ++K G GF + P + DID Sbjct: 31 KIPMNANDGSYGNSVDERTWADFETALTSLNKYQFDGLGFYF---KAPYFGVDIDDIQDD 87 Query: 75 ------EKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDI 128 T N + + L + +I +G++++ Sbjct: 88 IQDYLYGNTENLAAEFIQTLSSYTEYSVSGTGIHII-------AKGNFPEGGRRKGNIEM 140 Query: 129 LGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDK 188 G++FV Y +V + + + + Sbjct: 141 YPDGRFFVMTGQVIDN---YR--------QVNEATSAIQYLHTKYIGTNE-VRQINNLQS 188 Query: 189 KSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHH-----ETRGS 243 +P R + ++G + +A + + Sbjct: 189 TVDLPVSDIIQRAERSKQGAQFKTLYDGL----WDGLYPSQSEADLAFANMLAFWTGCNA 244 Query: 244 SKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKK----RSTFTSLFYHHGKLIP 299 K EI R + +D++ + + + S Sbjct: 245 EKMDEIFRSSGLYRTKWDQKRGAQLYGEMVINKAITNTSEIYQPGSELEGYSISIKNQNN 304 Query: 300 KGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFL 359 D N F ++ K +Y D +I Sbjct: 305 TARKVYGLDDTGNAERFRDKFHDIVRFSYINKGFYYYDSKVW---------KYDNIGAVK 355 Query: 360 VSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITS 419 + + + D+ E + S + + + ++ + + EA + + Sbjct: 356 TLVDDVIKDMKSEFAYMDNESDAEKAFMKHLKATRSNKGKTNMLK-----EAQHLMPVLP 410 Query: 420 DLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-E 478 + D FL Q+G ++L+ G+ + ++ TK + + + + + ++ F Sbjct: 411 EEFDRYKYFLNTQNGYINLQNGELINHDRQKMFTKISNIEYTDKIDAPLWQAFLNDIFAG 470 Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538 +E+++Y + VG +L G Q + G G +GKS +++I FG+ + + Sbjct: 471 DKELINYMQKAVGYSLSGSTSEQVMFILFGNGRNGKSVFLDIINDIFGSYATNIQPQTIM 530 Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598 ++ ++ AN + RL G+R V +E NE ++ +KQ+TGGD +TAR Y + + Sbjct: 531 VKQ---QSSNANSDIARLHGARFVTTTEPNEGVRLDEGLVKQLTGGDKVTARHLYKDEF- 586 Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAK 656 E F ++ N +R DD WRR ++PF I + D KL Sbjct: 587 EFTPEFKIWMATNHKPIIRGRDDGIWRRLHLVPFTVKIPDEKVDKQLKYKL-RSELTGIL 645 Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAK 716 W ++G + +GL +P+ A E + D A+I+DCCD+ E + + + Sbjct: 646 NWAVEGFLKWQREGLG--MPKAVENASSEYKSEMDVITAFIEDCCDVREGEKVNAKKMYE 703 Query: 717 SYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFE 776 +Y E+ ++ Y +S+ I + +K+ K+ + +G+ L + Sbjct: 704 TYHEWAKENGQY---LMSSTKFGKE---------IGMKFTKKKTKTANVYEGITLNDDYY 751 Query: 777 SV 778 ++ Sbjct: 752 NL 753 >gi|300814293|ref|ZP_07094565.1| nucleoside triphosphatase, D5 family [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511560|gb|EFK38788.1| nucleoside triphosphatase, D5 family [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 767 Score = 374 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 118/791 (14%), Positives = 255/791 (32%), Gaps = 64/791 (8%) Query: 6 WKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPL 65 WK + + P G + +SEK+ G G + L Sbjct: 19 WKYETRNNRETKIPFNPTTNGYASVNDPKTFTSFDKASEKLSSY--DGLGIRV---DGKL 73 Query: 66 YAFDID--SKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTT-EST 122 A D+D + + K+ + K L F I + Sbjct: 74 VAIDVDDCVINGDLNDFAKEIV-SHFPQSYIEFSPSGKGLRIFTFLPNSITYNNDIYKMK 132 Query: 123 QGHLDILGCG---QYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQE 179 +++ G ++ T Y ++ + P +E K ++ Sbjct: 133 TKEVEVYVSGFTNRFVTV------TGHVYQ------EGEIVEEPEGLLWLLEKYLKREKQ 180 Query: 180 ITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVH-- 237 K + + +N + + + + + D + ++A + Sbjct: 181 SNTTKKIFKSYLSDEEVIEKASNAKNNEKFLNLWAGNIKAYPSSSEADLALTSILAFYAG 240 Query: 238 -------HETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTF-DFEEIGDTAKKRSTFTS 289 R S ++ ++ G TY + + + F Sbjct: 241 GDVDQIDRLFRQSELFRDKWDE-NRGGKTYGGITIEKAISSLKEVYKPILKIDPSIEFDL 299 Query: 290 LFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLD 349 ++ ++D +F+ + K Y + KAWY ++ + + Sbjct: 300 SIEKLKEMGLPLSSKYSWTDIGAGKIFADFYKDSLRYVPERKAWYFYEEGIWIADTGS-- 357 Query: 350 KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSL 409 + + L D K + ++ + S + Sbjct: 358 ------LKAMKLCMNLANLLHILALDIEDEHKRKAYVKFSNRWQAR----GYRVSVLKDA 407 Query: 410 EAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF 469 E +++ D L +G L+L T + + Y++K + ++ + Sbjct: 408 EVHHPLNVSD--FDKDPYLLNCTNGTLNLRTMEFYEHRSSDYLSKMADVIYDPNSLNERW 465 Query: 470 LDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRG-VGGSGKSTLMNLIKYAFGN 527 + +E + + +G L G + + + G +GK TL I G Sbjct: 466 NRYIDEIMSGDKEKAKFLQKILGYGLTGDTRHECMAILYGMTTRNGKGTLCESILKVLGT 525 Query: 528 QYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCM 587 + + ++N+ +G + + RL G R V I E + +N A++K +TG D + Sbjct: 526 YACASRPETLALKNKVNSSG-PSEEIARLAGVRFVNIPEPGKGLPLNVAQVKSLTGNDTI 584 Query: 588 TARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDASFAQ 645 AR + N++ + F +I N V + R ++IPFDK +D + Sbjct: 585 NARFLHENSF-DFKPQFKIYINTNYLPIVNDVTVFTSGRMLIIPFDKHFTEEEQDKTLKT 643 Query: 646 KLETKY-TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIG 704 + + W ++G K +GL IP+ A + ++ +D +++DC + G Sbjct: 644 EFAKEEVKSAILNWLIEGYKLLQKEGL--TIPDSVKDATLKYQKESDKIAIFMEDCLEEG 701 Query: 705 ENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKR 764 ++ + + + Y + + S +T +L+ K IKR++ + Sbjct: 702 KDYEVRTSEVYERYRSWSLENG---YYLESMKTFKQSLESK---ATIKRKRPKDGKHKTT 755 Query: 765 IIKGLKLKPAF 775 ++ G +L F Sbjct: 756 VLIGYRLISEF 766 >gi|21223967|ref|NP_629746.1| ATP binding protein [Streptomyces coelicolor A3(2)] gi|3192005|emb|CAA19404.1| putative ATP binding protein [Streptomyces coelicolor A3(2)] Length = 756 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 141/787 (17%), Positives = 269/787 (34%), Gaps = 77/787 (9%) Query: 8 EQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDK-LPA------CGFGFVCGV 60 ++A GF + P+ K P+ G + + + E++++ + Sbjct: 26 DRAAYFARLGFGVFPMPTNKKMPRAKGWPDLAMTTVEEVEEMWRSFTPSGWQNIALTL-- 83 Query: 61 GEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIV--RIGQKPKILIPFRMNKEGIKKKKT 118 D+D K+ TA+ K T E + +R + + K Sbjct: 84 --DGWTVVDVDPKNGGTASLEKLTAEYELPVTRTHHTASGPDSLHFIYRADPDRPIKSGP 141 Query: 119 TESTQGHLDIL-GCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFF 177 S +DI G G VA + Y + +L + Sbjct: 142 LSSRYPGIDIKTGRGSLIVAPGSVI-NGRRYEVVSAAE----------PAVAPSWLSEIR 190 Query: 178 QEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIP--VVMA 235 + P+V +S PS+ + ++R T E+ A L NG W+ Sbjct: 191 GDAQYPVVPSARSRTPSRA-SAGHSRAATLAELRA-LPPDDPGRGNG----WLTQVAGHL 244 Query: 236 VHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTF---DFEEIGDTAKKRSTFTSLFY 292 + T S E+ S+ +D++ F D+ + + A S+ + Sbjct: 245 ARNHTDHDSYLHELRAIDSESEVPHDKDRFMKTADSIWEREQAKERPKAAAPDKPKSILW 304 Query: 293 HHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKIT 352 HH +D N + W W Sbjct: 305 HHEH-----------TDLGNGRRLRDLHGEDMRHAP---GW------GWLTWDGRRWARG 344 Query: 353 AS-IMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEA 411 F+ S+ + + + E E+ ++ R++ + + Sbjct: 345 DGQARRFMHSVADAISEAIESMEEKQRSDDLMRWFGRSCS-------GPGISAALNEASV 397 Query: 412 GSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLD 471 D+ L +G++DL TG+ + ++ +T+ T + ++D Sbjct: 398 MLPIETEISDFDADPHKLLVGNGVVDLRTGELLPVDRKYLLTRGTTVEYDPNADCPMWMD 457 Query: 472 LVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530 + F E+++Y R GM L+G N Q + G G SGK+TL ++ G+ Sbjct: 458 FLGWAFQGDIEMIEYIQRMFGMCLIGNNAHQVAFFLYGPGRSGKTTLTRVLSRLLGDYAT 517 Query: 531 INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR 590 + + N L RL G+R+V+ SET + IN A+ K+ TG D +TA Sbjct: 518 SADLSV-----FNESSSGHNEPLARLAGARLVVFSETRQGQRINEAQFKKFTGEDTLTAS 572 Query: 591 LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDASFAQKLE 648 ++ E +FTP + N + D RR VIP I++ ++ +++ Sbjct: 573 YKNK-SWFEFLPAFTPVMFGNAQPSI-AFDSGVERRMKVIPMRAQISDGQKNPKLVEQMM 630 Query: 649 TKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLW 708 W ++G + ++ D P+ +A +E ++ D +I++C E Sbjct: 631 LNEGPAIMAWAVEGARLTAAESFVPDPPQ-VAQAVKEYKRENDHIGDFIEECLVFDEGAT 689 Query: 709 EESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWK--SKRII 766 S + YS++ E K+ R L + I+ + +K + R + Sbjct: 690 VASDVVWGRYSKWIEAGGVDFVKKADDRAGKSLLVRMLKTWSIENGTPIESFKSSNTRKL 749 Query: 767 KGLKLKP 773 +G+ L Sbjct: 750 RGVALND 756 >gi|114566987|ref|YP_754141.1| hypothetical protein Swol_1465 [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114337922|gb|ABI68770.1| conserved hypothetical protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 770 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 109/802 (13%), Positives = 249/802 (31%), Gaps = 82/802 (10%) Query: 6 WKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGF-VCGVGEQP 64 W+ + + +P G KR + + G G VCG Sbjct: 21 WRYELRDGSQ---TKVPYMSGTKRKANVDDPTTFVAFDTAASATGYDGIGIRVCGR---- 73 Query: 65 LYAFDIDSKDEKTANTFKDTFEIL---HGTPIVRIGQKPKILIPFRMNKEGIKKKK-TTE 120 + D+D E+ + + + I + + F + + + T Sbjct: 74 IVGIDLDHCMEEG--KLLPWAQEIVDRFNVTYIEISPSGEGIRIFALLPDSFEYDTQTYY 131 Query: 121 STQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEI 180 +G++++ G T + T T + D +E L + Q Sbjct: 132 IKKGNIEVYIPGH----------TNRFLTVTG--NTINGADVAETAEALTWLLDTYMQRP 179 Query: 181 TVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGS---HDEWIPVVMAVH 237 T P + + + + ++ +NG + A+ Sbjct: 180 TPPTPAVAAPGESYLS-----DDEVIVKAASSKNGEKFTRLWNGDITGYKSQSEADAALV 234 Query: 238 HE-----TRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLF- 291 + ++ + R+ +D D++ I + + + Sbjct: 235 SILAFWCSGDKAQMDRLFRQSCLMREKWDS---LRGVDSYGNTVINKMVSRMTDYYKPII 291 Query: 292 ----------YHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNV 341 +L P ++D +F+ + + Y + K W+ Sbjct: 292 PRSAAEDFGVEWLKELDPMDSSKYPWNDIGAGHIFADFFQDRLRYVPERKMWFHYANGV- 350 Query: 342 YIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSK 401 + + + + + + K + + + + Sbjct: 351 -------WQPDTGNLCAMKYCMDLANLMYTFALEIKDEDKRKSYMKYASRWQSHSNRVNI 403 Query: 402 AKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFV 461 K +A I+ D+ ++G L ++TG+ + +TK + + Sbjct: 404 LK------DAQVHHPISYGSFDADIYIFNCKNGTLHIDTGEFTEHRSTDLLTKKSPVVYD 457 Query: 462 EGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRG-VGGSGKSTLMN 519 S F + + + + +G L G + + + G +GK TL Sbjct: 458 PMAYSGRFASYIDEIMSGDADRAKFLQKILGYGLTGDTRHECMTILYGVTTRNGKGTLCE 517 Query: 520 LIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIK 579 + G+ + + I + + + RL G R V I E + ++AAK+K Sbjct: 518 SVLKVLGDYGCASRPET-IAMKSYTNGSQPSEDVARLAGVRFVNIPEPGKGMVLDAAKVK 576 Query: 580 QMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN- 638 MTG D + AR + N++ + F ++ N + + R I+IPFD+ Sbjct: 577 AMTGNDTLNARYLHENSF-DFQPQFKIYVNANFLPVINDMTLFSSDRIIIIPFDRHFDEH 635 Query: 639 -RDASFAQKLETKY-TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAW 696 RD + ++ + W L+G + ++GL + P+ A E + +D + Sbjct: 636 SRDTTLKRRFAEEDVQSAILNWLLEGYRLLQTEGLFL--PKSVKDATERYQHDSDKMALF 693 Query: 697 IDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKI 756 +D + + + Y E+ ++ Y + L+ + R++ Sbjct: 694 FEDSLVADDTAEVMTARVYARYKEWCQENGTY---PEGMKNFKQGLQA---FAEVVRKRP 747 Query: 757 EKEWKSKRIIKGLKLKPAFESV 778 ++ + ++ G +L + Sbjct: 748 KRGGEKTTLLIGYRLITDIPPL 769 >gi|295108406|emb|CBL22359.1| phage/plasmid primase, P4 family, C-terminal domain [Ruminococcus obeum A2-162] Length = 769 Score = 372 bits (954), Expect = e-100, Method: Composition-based stats. Identities = 115/786 (14%), Positives = 241/786 (30%), Gaps = 61/786 (7%) Query: 6 WKEQAKQAIHNG-FKLIPLRLGDKR--PQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGE 62 WK + + NG +P ++ KR + L+ +D+ G G Sbjct: 18 WKYEKR----NGCMTKVPYQINGKRASSADKKTFSNFRLAVSAMDEYDGIGMGAF----- 68 Query: 63 QPLYAFDIDS--KDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120 DID K +D E + + ++ + Sbjct: 69 DDFCMVDIDHCVSGGKLTQMAEDIVEKMDSYTEISPSGMGVRIVCKASYLSYDTDRYYIN 128 Query: 121 STQGHLDILGCG--QYFVAYNIHPKTKKEYTWTTPPHRFKVED-----TPLLSEEDVEYL 173 + + L+I G + F + + + +E P + Sbjct: 129 NQKLGLEIYAAGVTRKFCTLTGNVIRNRGIEERSAELGTILETYMLRPIPEKKNRTQDIP 188 Query: 174 FKFFQEITV--PLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIP 231 + + +V ++ W ++ + L+ + G Sbjct: 189 GSYLSDDSVIRLASDSRQGEKFKALWNGEIPDGKSHSDADMSLASILAFWCGGD------ 242 Query: 232 VVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKW-DTFDFEEIGDTAKKRSTFTSL 290 + R S + R + GSTY DF F + Sbjct: 243 -TGQMDRLFRKSGLMRSKWDRV-QSGSTYGALTMEKAVAQALDFYRPYARTSAERDFDDM 300 Query: 291 FYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDK 350 +L ++D + +F+ K Y + K WY ++ T Sbjct: 301 LQKLIELNVSDNSRYPWNDNGSGRLFADAYKDIARYVPERKKWY--------VYDGTRWI 352 Query: 351 ITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLE 410 + + K L + + + + N+ + Sbjct: 353 PDIGGLKTMELAKSLADSLVRYALTITDERRRKDYLEYSAKWQSRNYRNTYI------SD 406 Query: 411 AGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFL 470 A S++ I D + +L Q+G LDL+TG+ T + +TK G + + Sbjct: 407 AQSVYPIAMSEFDRNVYYLNCQNGTLDLQTGEFHPHTPQDKLTKIAGAAYDPNAKNPRST 466 Query: 471 DLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRG-VGGSGKSTLMNLIKYAFGNQ 528 V+ + + + +G L G + + G +GK TLM + G+ Sbjct: 467 RFVAEVMSGDADKARFMQKSLGYGLTGDTRYECMFFYYGATTRNGKGTLMESTLHVMGDY 526 Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588 + + I + + RL G R ISE +N A+IK MTG D + Sbjct: 527 GLTVRPET-IAAKPSANSQNPTEDIARLAGVRFANISEPRRGLVLNEAQIKSMTGNDTLN 585 Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQK 646 AR + N++ + F ++ N + + R ++IPFD+ ++ + + Sbjct: 586 ARFLHENSF-DFKPQFKLYVNTNYLPAITDMTLFSSGRIVIIPFDRHFEEWEQEQNLKAE 644 Query: 647 LETKY-TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE 705 W ++G +G P+ A + +D + ++++ + Sbjct: 645 FSRPEAASAILNWLIEGYTILKEEG--FAQPKAVKDATMSYQHDSDKMELFVEEFLEEEN 702 Query: 706 NLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRI 765 + + ++ ++Y + + +R L+ G + R + + + Sbjct: 703 DAECRTSAVYQAYRNWCNDNGYFAEN---SRNFNQALRAIG---TVVRRRPRDGGEKTTL 756 Query: 766 IKGLKL 771 + G +L Sbjct: 757 LTGYRL 762 >gi|228963014|ref|ZP_04124222.1| hypothetical protein bthur0005_62410 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228796668|gb|EEM44069.1| hypothetical protein bthur0005_62410 [Bacillus thuringiensis serovar pakistani str. T13001] Length = 791 Score = 370 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 133/798 (16%), Positives = 256/798 (32%), Gaps = 89/798 (11%) Query: 5 QWKEQAKQAIHNGFKLIPLRLGDK--RPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGE 62 QW K+ + IP + + + W + + + G GFV + Sbjct: 20 QWVLWRKEERNGKPTKIPYQANGEMAQANNRRTWSTFATAVKFYLEGDYDGIGFVF-SRQ 78 Query: 63 QPLYAFDIDSKD--EKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120 DID KT + + L +K I I + + + Sbjct: 79 DNYIGIDIDKCAVAGKTNTFATEIIDTLDSYTEFSPSEKG-IHIIIKGSLPQSVLGTGRK 137 Query: 121 STQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEI 180 +T+ L+I G++F +R D ++E E +F + Sbjct: 138 NTKHGLEIYSYGRFFTFTG---------------NRENSNDVYDRTDELAEIFEIYFDDS 182 Query: 181 TVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSH--DEWIPVVMAVHH 238 K +N R + +NG+ D+ +++ + Sbjct: 183 D--RQGRVNLAEFEKDEIKVSNDALWERMFRSKNGDEIRSLFNGNLVNDDHSASDLSLMN 240 Query: 239 ---------------ETRGSSKGKEIAR--RWSKQGSTYDEENFNYKWDTFDFEEIGDTA 281 R S ++ +S TY E + + Sbjct: 241 HLAFWTGKSATRMDSMFRESGLMRDKWDVIHFSDTNETYGERTIATAISSTSSTIL---- 296 Query: 282 KKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNV 341 + F + + A + + M + + T + + Sbjct: 297 DYKQQFEEFSFDFRDVGDNEDEARPVNRKF---MLTEMGNAERIATEYGHVIRFVNGSGW 353 Query: 342 YIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSK 401 Y W K S ++ K + L + + W +R Sbjct: 354 YTWDGKHWKEDRSRAVERITSK-TLRKLLK------SEDEREVKWGRQCEKRA------- 399 Query: 402 AKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFV 461 + + + D+ L ++G++DL+TG+ ++ +TK F Sbjct: 400 -IRMNSIKDMIPLVPAQREDFDTHQYLLNVENGVIDLKTGKLSPHDRDFMLTKMVNIEFK 458 Query: 462 EGEPSQEFLDLVSGYFESEE------VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKS 515 +GE + + F+ E ++++ + +G +L Q + G G +GKS Sbjct: 459 QGEDCPNWKLFLDSIFKDVEGNTDYELIEFIQKSIGYSLTSDISEQVMFFLYGSGRNGKS 518 Query: 516 TLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA 575 T +N IK GN + I + N + RL G+R V E+ E +++ Sbjct: 519 TFINTIKSLLGNYAKQTNSDTFIKKK---HDSGVNNDIARLAGARFVSAVESEEGQQLSE 575 Query: 576 AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP 635 A +KQ+TGG+ ++AR + E +F F N ++ D+ WRR +IPF Sbjct: 576 ALVKQITGGEPISARFL-RQEFFEFTPAFKVFFTTNHKPIIKGMDEGIWRRVRMIPFIVT 634 Query: 636 IANR--DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTY 693 I D +KL W ++G + + + P+ A ++ D Sbjct: 635 IPKDKVDRKLPEKLSM-EMSGILNWAIEGCLKWQRE--SLGEPKAIQDATNHYKEEMDIL 691 Query: 694 QAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKR 753 + ++ D C + E+ L YS + +E + RT L+ K Sbjct: 692 EPFLLDKCFLHPQAKMEAKELYSEYSRWCNEEGEII---LRNRTFYRLLEN-------KN 741 Query: 754 EKIEKEWKSKRIIKGLKL 771 ++ K+K + G+ L Sbjct: 742 IVKKRGAKNKVFLYGVGL 759 >gi|147919628|ref|YP_686631.1| phage-like protein [uncultured methanogenic archaeon RC-I] gi|110622027|emb|CAJ37305.1| hypothetical phage-like protein [uncultured methanogenic archaeon RC-I] Length = 867 Score = 366 bits (939), Expect = 8e-99, Method: Composition-based stats. Identities = 139/820 (16%), Positives = 256/820 (31%), Gaps = 82/820 (10%) Query: 14 IHNGFKLIPLRLGDKRPQRLGKWEEQLLSS--EKIDKLPACGFGFVCGVGEQPLYAFDID 71 +H G +IPL G K P W S +K P G + G +D D Sbjct: 68 VHRGASVIPLIPGKKIPYCTWDWSVSEGSGVFYLWEKFPYALIGVMTGK--SGYIVWDFD 125 Query: 72 SKDE--KTANTFKDTFEILHGTPIVRIGQKPKILIPF---------------RMNKEGIK 114 K +T N + L + I + + + F + +G K Sbjct: 126 KKHGGLETYNLMCQLYPELKESYIEET-RSGGLHVYFTCGDLTVKKGVDIFMKKLADGKK 184 Query: 115 KKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTT----PPHRFKVEDTPLLSEEDV 170 K + +DI G VA K EY P + D L+ + Sbjct: 185 VPKWADKNWPGVDICANGSIAVAAPSV-DVKGEYKVLNNKPIQPISQGLIDLLRLTGRVM 243 Query: 171 EYLFKFFQEITVPLVKDKKSIIPSKTWTNNNN---RQYTNREITAFLSCFGEEFYNGSHD 227 + E K + IP++ + + + + F + Sbjct: 244 DAEAFEKAEADPAYSKVEAQPIPNRYYKEQFAPICIKGIVDSLKEGKADNDSMFALACY- 302 Query: 228 EWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEI---------- 277 + + + +E S +D + + + Sbjct: 303 ---LMGLNLENEAILSVY---------SVSPKFDRGLTEHYLNYYRRMGYKCQTCVTMQA 350 Query: 278 -----GDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKA 332 G + + Y + + + + M + Y T+ Sbjct: 351 NGLCTGGAGCNKVKSPAWNYRNTYYVENWPYDNAKDEKGVADMLADLYGDDIRYVRGTEK 410 Query: 333 WYKKDKNNVYIW-SLTLDKIT-----ASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFW 386 WY + N +M+ L+ + ++E + + Sbjct: 411 WYTWNGENWPEDVDEAHLSRMITCMADLVMDRLLFLSSLTKTITEGEARKAHKAHIENLY 470 Query: 387 FNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP 446 R S K + ++E+ + S+ D LD + +G +L+T + + Sbjct: 471 RQFHKMRTVGNIKSMIKMASMTIESIILDSV--DELDKDKHLINLLNGAFNLDTSEFIPH 528 Query: 447 ---TKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQR 502 TK +T + F + +++ DY R +G AL G ++ Sbjct: 529 GERTKPYLMTLRANVAYNPEAKRPRFDKFIDEITCGDKDLADYLQRSLGYALSGYTGEEK 588 Query: 503 FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIV 562 F G G +GKS L I Y G+ + IM P + S RL G R + Sbjct: 589 FFAWFGNGRNGKSKLAEAILYLMGDYASSANATAFIM---PKNGNIRSFSFARLRGKRFI 645 Query: 563 IISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDA 622 SE EN N +IK+ D +TA +G + + F + N + D + Sbjct: 646 RCSEVPENSVWNDVRIKEFLS-DTITAEEKFGAEF-DYKPQGKLFFLCNHLPAMP-KDRS 702 Query: 623 WWRRYIVIPFDKPIANRDASFAQKLETK-YTLEAKKWFLKGVKAYISKGLDVDIPEVCLK 681 ++ V+PFD + + K W ++G + + + L I + + Sbjct: 703 TETKFFVVPFDLQLEPHQVDMGIEEALKAEAEGILLWMIEGYQKWKANDLR-RISQAVKE 761 Query: 682 AKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLN 741 A + + D + A++ D C I + ++ L ++ ++E S Sbjct: 762 ASDRYWRDADWFAAFLSDMCVIDPSAEVDAGELYTTFKSWQE---RVGAPIQSATAFGKR 818 Query: 742 LKQKGFI-GGIKREKIEKEWKSKRIIKGLKLKPAFESVDD 780 L GF KR + ++ + GLKLK A + +D Sbjct: 819 LTSSGFKSRESKRTDRDGRKRTVNLRIGLKLKIAIATCED 858 >gi|148555111|ref|YP_001262693.1| P4 family phage/plasmid primase [Sphingomonas wittichii RW1] gi|148500301|gb|ABQ68555.1| phage/plasmid primase, P4 family [Sphingomonas wittichii RW1] Length = 955 Score = 364 bits (934), Expect = 3e-98, Method: Composition-based stats. Identities = 151/886 (17%), Positives = 259/886 (29%), Gaps = 160/886 (18%) Query: 6 WKEQAKQAIHNGFKLIPLRLGDKRP-------------QRLGKWEEQLLSSEKID----K 48 + + A G+ + P +KRP G ++ E I K Sbjct: 31 FLDAALGYAARGWPVFPCNPKNKRPLLGKDRDAQGNAIPGTGGLKKASTDPETIRGWWRK 90 Query: 49 LPACGFGFVCGVGEQPLYAFDID------------SKDEKTANTFKDTFE---------- 86 P G + GV L+ D D D T + T E Sbjct: 91 WPKAMIGLLTGV--NGLFVVDFDPGIETDPKTGEPIMDPVTGEPIEYTLEGLKAVLCFQI 148 Query: 87 --ILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKT 144 L + VR K + + FR EG + + +D+ G G Y +A T Sbjct: 149 GGPLPASLAVRTAGKGGVHVYFRQPDEG-ADIRNRNNLPHRIDVRGTGGYVIAPPSVMDT 207 Query: 145 KKEYTWTTPPHRFKVEDTPLLSEEDVEYL----FKFFQEITVPLVKDKKSIIPSKTWTNN 200 +EY W + + P + + P + T + Sbjct: 208 GREYRWLHGDADVEPVEAPAALVDILRKPKGSAPSENVGANAPASSRPTVAVDRPTSEAD 267 Query: 201 NNRQYTNREITAFLS---CFGEEFYNGSHDEWIP-VVMAVHHETRGSSKGKEI------- 249 Q R A L NG+ + + +A+ H + +E+ Sbjct: 268 AEEQALRRYGLAALDREVEKARTAPNGTRNNTLNACGLALGHLVGAGALSRELAISALVD 327 Query: 250 ----ARRWSKQGST------------------------------------------YDEE 263 R K T Sbjct: 328 VARAWRDIDKSTDTITRAVDDGAADPRELAHVRADARDRFRRFAGRRRDNPSAASGLRAA 387 Query: 264 NFNYKWDTFDFEEIGDTA---KKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYK 320 + + GD A R + S + + L +D N + Sbjct: 388 EIEQSFQSGSEANDGDAAGVETGRRSTASQRARAARELHGKLARYNRTDLGNAERWRDRF 447 Query: 321 KGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIM-----NFLVSMKEDVFDLSEEPED 375 F Y+ + W K+ ++ L S+ + V + E Sbjct: 448 GDDFRYSPALG---------WFAWDRKRWKLLSAEANKVPGEVLASVFKMVRAIRREAWV 498 Query: 376 NNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEA------------------GSIFSI 417 + R +E KAK + +L A +I Sbjct: 499 VRASGVPDLEKNPGGLDRTVFDEKGKAKRLSAALFAWADTSEGNARLTCVAKLAMPFITI 558 Query: 418 TSDLLDSSSRFLGEQDGILDLE-----------TGQKVKPTKELYITKSTGTPFVEGEPS 466 D D Q+G L + + + +TK + F S Sbjct: 559 EPDAFDRDLYAFNVQNGTLRFRRERRPDGSWRVMMKLMDHDRRDLLTKISPVTFDPEAKS 618 Query: 467 QEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFG 526 + L+ + Y + G++L G Q+ G GG+GK T++N + G Sbjct: 619 PVYDGLLEWAQPDPAMRRYLHQWGGLSLTGETGEQKLHFWHGGGGNGKGTVLNAWCHVAG 678 Query: 527 NQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDC 586 + + + + + Q KA P L +L G R++ +SE E ++ A IK +TG D Sbjct: 679 DYFASVSIETFLDQGPKKSGDKATPDLAKLPGVRLLRVSEPEERAQLAEALIKLVTGQDP 738 Query: 587 MTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFA 644 ++ R + + E F I+ N L +R D WRR +IP+D I A++D + Sbjct: 739 LSVRHLHK-GFFEFLPHFKLTIMGNHWLGIRGTDKGIWRRVKLIPWDASIDDADKDETLP 797 Query: 645 QKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIG 704 +L +KG+ ++ GL P +A R+ +D ++ C Sbjct: 798 DQL-KAEASGILNHMIKGLLDWMRNGL--IEPRSVTQATAAYREASDPLGRFLALCVRPA 854 Query: 705 ENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGG 750 + +S L Y + +T L KG+ Sbjct: 855 QGKRVQSSRLHAVYEAWCAAASE---PTWKNKTFAQALLDKGYKKK 897 >gi|227431773|ref|ZP_03913800.1| DNA-polymerase or DNA-primase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352456|gb|EEJ42655.1| DNA-polymerase or DNA-primase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 791 Score = 363 bits (931), Expect = 7e-98, Method: Composition-based stats. Identities = 138/796 (17%), Positives = 260/796 (32%), Gaps = 80/796 (10%) Query: 15 HNGFKLIPLRL---GDKRPQRLGKWEEQLLSSEKIDKLP-ACGFGFVCGVGEQPLYAFDI 70 N + +P+ G + W + +S ++ A G F + DI Sbjct: 27 KNKYTKVPIDPYSGGAGKSNDSSTWSDFATASNAMEHFANADGLAFYFA---NGYFGIDI 83 Query: 71 DSKDEKTANTFKDTFEILHGTPIVRIGQK-------PKILIPFRMNKEGIKKKKTTESTQ 123 D + + V Q + + + Sbjct: 84 DHIKSDVDGFIEGDRDNNIVDEFVSSTQSYTERSMSGEGIHIIAK-----GNLPEGQRRH 138 Query: 124 GHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVP 183 + ++ G++F T T KV D + F +I V Sbjct: 139 NNFEMYDNGRFFALTGD--------TITKSESIMKVPD--EVIGRLHRKYFMKASKINVD 188 Query: 184 LVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHH----- 238 L + + + T + + + + + +A+ + Sbjct: 189 LG-VVDNTVTERIDTPALLEMMYSSSAGVRIKHLIDGGWENDYASQSEADLALANYLSFW 247 Query: 239 ETRGSSKGKEIARRWSKQGSTYDEENFNYKW----------------DTFDFEEIGDTAK 282 R ++ EI R Y+E+ + + + + D Sbjct: 248 TGRDFAQMDEIFRDSVLFRDKYNEKRGQTTYGIALLTKAISEQTEVYHGKNLKPLIDLDD 307 Query: 283 KRSTFTSLFYHHGKLIPKGLLAS-RFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNV 341 + T + + D F Y +FLY T+ D Sbjct: 308 LPTFLTGNAEIVAEKDDSPKQKFFSYDDTGLAERFQYYYGDNFLYDTITRKSMYYDGQVW 367 Query: 342 YIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSK 401 + L + T + + + + E D+NK + F R + +EN+ Sbjct: 368 QEDNYRLLEKTMNKTVDRIKEEPEFTIAPENMGDSNKTPDELKAAFKKKSRSHSAKENAI 427 Query: 402 AKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFV 461 E ++ ++T+D D L G+L+L +G + E TK T + Sbjct: 428 K-------ELRNLITVTTDDFDKELSVLNTPSGVLELTSGAVKNSSHEDRFTKITNAEYN 480 Query: 462 EGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNL 520 + + + +L + F +EE++++ R +G A G + + G G +GKS MN Sbjct: 481 DKKAPERWLAFLEQTFKGNEELIEFTQRALGYAATGTMDEEVMFILHGNGKNGKSVFMNT 540 Query: 521 IKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQ 580 I Y G+ + N + + +R +G + + R+ G+R++++SE E + IK+ Sbjct: 541 IDYVLGDYSI-NVDPETVFASRSRNSGGPSGDIARMKGARLMVLSEPEEGKPLAEGLIKK 599 Query: 581 MTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR- 639 +T D +TAR + N E + T F++ N + DD WRR I IPF + Sbjct: 600 ITSKDTITARKLHSNE-IEFRPTGTIFMMTNHKPIINGTDDGIWRRLIFIPFRNQVKTEN 658 Query: 640 -DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID 698 D KL W +G + GL+ P V L E R D Q++I+ Sbjct: 659 MDKKLEDKL-RTEADAILAWIQEGTMKWQRDGLNP--PPVVLNETNEYRDEMDDVQSFIE 715 Query: 699 DCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEK 758 + D + E +A + ++ ++ + + L K +K Sbjct: 716 EYFDYSTDERTEFKEIATRFDTWKRLHG----VDMTNKKLGRELGTK---------FEKK 762 Query: 759 EWKSKRIIKGLKLKPA 774 K G+ LK Sbjct: 763 RSHGKVYYYGISLKAE 778 >gi|237653460|ref|YP_002889774.1| P4 family phage/plasmid primase [Thauera sp. MZ1T] gi|237624707|gb|ACR01397.1| phage/plasmid primase, P4 family [Thauera sp. MZ1T] Length = 782 Score = 363 bits (931), Expect = 7e-98, Method: Composition-based stats. Identities = 113/573 (19%), Positives = 218/573 (38%), Gaps = 38/573 (6%) Query: 195 KTWTNNNNRQYTNREITAFLSCFGEEFYNGS-HDEWIPVVMAVHHETRGSSKGKEIARRW 253 ++ + + + + G D ++ V+ ++ E+AR W Sbjct: 220 RSALPEPETRENVERLRSAAAAIPSSKAKGCTRDIYLTVLWGFAATGWNCAE--ELAREW 277 Query: 254 SKQGS-TYDEENFNYKWDTFDFEEIG--------DTAKKRSTFTSLFYHHGKLIPKGLLA 304 +DE++F W ++D + A++ + P +A Sbjct: 278 CMTSPEDFDEDDFGKDWRSYDAQRTERIGMGSVFKLAEQNGWVDPRHVVNSTKQPTPDIA 337 Query: 305 SRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKE 364 +D N F Y + + W +W + + K Sbjct: 338 QTLNDTSNAERFVRACGERLRYVVELRIW--------LVWHEGHWRYDRKG-QIVELAKR 388 Query: 365 DVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDS 424 + + + + + + Q + AQ+ +++ LD+ Sbjct: 389 VATRMFSDAGELATAADRNALFKWANASLQ-LPRLEAMVKLAQA-----PLAVSVSELDA 442 Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVM 483 LG ++G+++L TG + E ITK +V G + ++ G + ++ Sbjct: 443 DPWLLGVKNGVVELRTGTFRQSRPEDLITKIANVEYVAGATCPTWEAMLDGCMGGNRQLA 502 Query: 484 DYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP 543 D+ R G L G Q F GVG +GKST++N ++ G + + + Q R Sbjct: 503 DFIQRAAGYTLTGSTSEQVFFFAYGVGANGKSTVINALREIMGGHGLQSQPEVIMAQ-RN 561 Query: 544 PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPAS 603 P L RL G R+V + ET + ++ +++KQM+GGD MTAR+ +G + + Sbjct: 562 TNPSGPTPELARLAGVRMVAMVETEDGQRLHESRVKQMSGGDAMTARVLHGEPF-DFVPK 620 Query: 604 FTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLK 661 F ++ N +R D WRR ++IPF I RD A+KL W ++ Sbjct: 621 FKLWLAGNHRPVIRGDDHGIWRRIVLIPFLVTIPPEKRDRMLAEKL-RDEYPGVLNWLIR 679 Query: 662 GVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEY 721 G + GLD+ P ++ ++ + D W+D+ C +G + + S + YS + Sbjct: 680 GCLEWQRVGLDL--PSDVVREVDQYKSDMDLIAQWLDEQCSVGPAMRCRARSAYQDYSTW 737 Query: 722 REQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754 + + + I+ L ++GF +R+ Sbjct: 738 AKDGGH---QVITEVRFAQKLDERGFTKRKERQ 767 >gi|304440020|ref|ZP_07399913.1| phage/plasmid primase [Peptoniphilus duerdenii ATCC BAA-1640] gi|304371512|gb|EFM25125.1| phage/plasmid primase [Peptoniphilus duerdenii ATCC BAA-1640] Length = 767 Score = 362 bits (928), Expect = 2e-97, Method: Composition-based stats. Identities = 117/791 (14%), Positives = 254/791 (32%), Gaps = 64/791 (8%) Query: 6 WKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPL 65 WK + + P G + +SEK+ G G + L Sbjct: 19 WKYETRNNRETKIPFNPTTNGYASVNDPKTFTSFDKASEKLSSY--DGLGIRV---DGKL 73 Query: 66 YAFDID--SKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTT-EST 122 A D+D + + K+ + K L F I + Sbjct: 74 VAIDVDDCVINGVLNDLAKEIV-NHFPQSYIEFSPSGKGLRIFTFLPNSITYNNDIYKMK 132 Query: 123 QGHLDILGCG---QYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQE 179 ++ G ++ T Y ++ + P +E K ++ Sbjct: 133 TKEVEAYIAGFTNRFVTV------TGHVYQ------EGEIVEEPEGLLWLLEKYLKREKQ 180 Query: 180 ITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVH-- 237 K + + +N + + + + + D + ++A + Sbjct: 181 SKSNKQNFKSYLTDEEVIEKASNAKNKEKFLNLWAGNIKAYPSSSEADLALTSILAFYAG 240 Query: 238 -------HETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTF-DFEEIGDTAKKRSTFTS 289 R S ++ ++ G TY E + + + F Sbjct: 241 GNTDQIDRLFRQSELFRDKWDE-NRGGKTYGEITIEKAISSVKEVYKPISRIDPSIEFNL 299 Query: 290 LFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLD 349 ++ ++D +F+ + K Y + KAW+ + + + Sbjct: 300 SIEKLKEMGLPLSSKYSWTDIGAGKIFADFYKDSLRYVRERKAWHFYEDGIWIADTGS-- 357 Query: 350 KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSL 409 + + + L D K + ++ + S + Sbjct: 358 ------LKAMKLCMKLANLLHILALDIEDEHKRKAYVKFSNRWQAR----GYRVSVLKDA 407 Query: 410 EAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF 469 E +++ D L +G L+L T + Y++K + ++ + Sbjct: 408 EVHHPLNVSD--FDKDPYLLNCTNGTLNLRTMEFYAHRSSDYLSKMADVIYDSKSLNERW 465 Query: 470 LDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRG-VGGSGKSTLMNLIKYAFGN 527 + +E + + +G L G + + + G +GK TL I G Sbjct: 466 NIYIDEIMSGDKEKAKFLQKILGYGLTGDTRHECMAILYGMTTRNGKGTLCESILKVLGT 525 Query: 528 QYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCM 587 + + ++N+ +G + + RL G R V I E + +N A++K +TG D + Sbjct: 526 YACASRPETLALKNKVNSSG-PSEEIARLAGVRFVNIPEPGKGLPLNVAQVKSLTGNDTI 584 Query: 588 TARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDASFAQ 645 AR + N++ + F +I N V + R ++IPFD+ +D + Sbjct: 585 NARFLHENSF-DFKPQFKIYINTNYLPIVNDVTVFTSGRMLIIPFDRHFTEEEQDKTLKT 643 Query: 646 KLETKY-TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIG 704 + + W ++G K +GL IP+ A + ++ +D +++DC + G Sbjct: 644 EFAKEEVKSAILNWLIEGYKLLQKEGL--TIPDSVKDATLKYQKESDKIAIFMEDCLEEG 701 Query: 705 ENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKR 764 ++ + + + Y + + S +T +L+ K IKR++ + Sbjct: 702 KDYEVRTSEVYERYRSWSLENG---YYLESMKTFKQSLESK---ATIKRKRPKDGKHKTT 755 Query: 765 IIKGLKLKPAF 775 ++ G +L F Sbjct: 756 VLIGYRLISEF 766 >gi|258516810|ref|YP_003193032.1| P4 family phage/plasmid primase [Desulfotomaculum acetoxidans DSM 771] gi|257780515|gb|ACV64409.1| phage/plasmid primase, P4 family [Desulfotomaculum acetoxidans DSM 771] Length = 798 Score = 361 bits (925), Expect = 4e-97, Method: Composition-based stats. Identities = 95/475 (20%), Positives = 170/475 (35%), Gaps = 30/475 (6%) Query: 306 RFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKED 365 +D N Y W IW+ +I + + K Sbjct: 303 NLTDLGNTRRLVTQHGQTIRYCH---IW-----KKWLIWNGKFWEIDNTGAVVRL-AKNT 353 Query: 366 VFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSS 425 V + E + + S+ K+ E+ I+ D LD++ Sbjct: 354 VMSIYAEASKESDEGLRKALVDHARKSEAA----SRIKAMITLAESEEGIPISPDQLDNN 409 Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFES-EEVMD 484 L +G +DL+TG+ + ++ YITK + + ++ E + ++ Sbjct: 410 RWLLNCLNGTVDLKTGKLLPHRRDDYITKIAPVEYRPDVECPIWHTFLNEIMEDNQNLVS 469 Query: 485 YFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544 + R GM L G + G G +GKSTL+N++ + + + ++ Sbjct: 470 FLQRAAGMCLTGDVSEHVLFVLHGNGRNGKSTLLNIMLDIMNDYSIQAPPDLLMAKHNE- 528 Query: 545 EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604 + L L G R+V+ E++E + + IKQ+TGGD + AR + E S Sbjct: 529 ---RHPTELADLFGKRLVVSIESDEGRRMAESLIKQLTGGDKIKARRM-REDFWEFWPSH 584 Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVK 664 ++ N VR D A W R +IPF+ A R+ KW ++G Sbjct: 585 KLWLATNHKPQVRGTDTAIWSRLKLIPFNVSFAGRENKQLPAKLLTEKPGIFKWLVEGCL 644 Query: 665 AYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQ 724 A+ +GL V P+ A E R DT ++ + C + + + ++Y + E Sbjct: 645 AWQREGLGV--PDEVQAATEIYRTEQDTLGNFLTEHCITNPLVRVPASDIYRAYKAWCEN 702 Query: 725 ELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVD 779 Y +S + L ++GF K + G+ L + Sbjct: 703 NNEY---VLSQKIFGTRLSERGFN------KSRGTKTGGYVWYGIGLLNDLNDTE 748 >gi|283783337|ref|YP_003374091.1| nucleoside triphosphatase, D5 family [Gardnerella vaginalis 409-05] gi|283441568|gb|ADB14034.1| nucleoside triphosphatase, D5 family [Gardnerella vaginalis 409-05] Length = 774 Score = 357 bits (916), Expect = 4e-96, Method: Composition-based stats. Identities = 126/800 (15%), Positives = 244/800 (30%), Gaps = 67/800 (8%) Query: 6 WKEQAKQAIHNG-FKLIPLRLGDKRPQRLGKWEEQLLSSEKID-KLPACGFGFVCGVGEQ 63 WK + ++ NG P + + + + K G G Sbjct: 19 WKYEQQE---NGRLTKPPYNPITGKKAATDNLSDFTSLDDAMKVKDQYDGIGI---KLVD 72 Query: 64 PLYAFDIDSK--DEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTES 121 L D+D + + K+ I K I N KK + Sbjct: 73 NLLGIDLDHCIDNGIIKDWAKEIIAHFKHAYIEYSPSKHGFHILLLFNGAYDKKSYYIKH 132 Query: 122 TQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEIT 181 G +++ T + T T ++ + E + L + + Sbjct: 133 --GDIEVY----------SALATNRYLTVTGDVYQE--GELLEDDEAIMWLLDTYMKRNI 178 Query: 182 VPLVKDK----KSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVH 237 K+ +S + + + TA + + S + V + Sbjct: 179 NTHEKENNACTRSYLSDTSVIEKAGNAINGAKFTALWHGDISAYPSHSEADAALVSILAF 238 Query: 238 HETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEE----------IGDTAKKRSTF 287 + + + R+ + +DE + ++ A F Sbjct: 239 YCGGNKEQIDRLFRKSALFRPKWDEHRGADTYGNTTIQKAVSKCHTFYEPFHNASAEEDF 298 Query: 288 TSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLT 347 L +L P + R D N +F+ + Y + K W+ I+ Sbjct: 299 DDLLSKLQELKPDENIRYRNGDLGNGRLFADIFQNILHYVPERKMWF--------IFDGV 350 Query: 348 LDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQ 407 + + K+ L + K Sbjct: 351 RWTCDIGTLKTMELCKDLALSLIRYAGVIKDERTRSMLVEYWNKWSSRRNREIYIK---- 406 Query: 408 SLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ 467 EA S++ I+ + D + Q+G LDL+ G K ITK + + S+ Sbjct: 407 --EAQSVYPISMEAFDKNIYLFNCQNGTLDLQHGVFRKHLATDLITKVSPVFYDPKARSE 464 Query: 468 EFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGV-GGSGKSTLMNLIKYAF 525 F V E Y + +G AL G + + + G +GK TLM + Sbjct: 465 RFRQFVDEIMSGDCEKALYLQKSLGYALSGDTRYECMFFLFGESTRNGKGTLMESVLSVM 524 Query: 526 GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGD 585 G+ A I + P + + + RL G R ISE + +N+A++K MTG D Sbjct: 525 GDYGKA-VRAETIALKKNPNSSQPTEDVARLAGVRFANISEPSRGLFLNSAQVKYMTGSD 583 Query: 586 CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASF 643 + AR + N++ + F ++ N + + R +IPF++ +D + Sbjct: 584 TLNARFLHENSF-DFKPQFKLYVNTNYLPVISDMTVFSSDRMQIIPFNRHFEAWEQDKTL 642 Query: 644 AQKLETKY-TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCD 702 + K W L+G +G P L A +D + +D Sbjct: 643 KAEFSKKEVQSAILNWLLEGFTHLRDEGFKP--PNSVLDAIFSYAHDSDKMAQFAEDVLV 700 Query: 703 IGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKS 762 ++ + + Y ++ + +R L++ + R++ + + Sbjct: 701 KDQSSEIRTAVVYDHYKKWCIDNGCFSEN---SRNFNQELRK---FAEVVRKRPKTGGEK 754 Query: 763 KRIIKGLKLKPAFESVDDNS 782 ++KG +LK F + Sbjct: 755 TTLLKGYRLKSEFSDFLSGN 774 >gi|88602291|ref|YP_502469.1| Phage/plasmid primase P4-like protein [Methanospirillum hungatei JF-1] gi|88187753|gb|ABD40750.1| Phage/plasmid primase P4-like protein [Methanospirillum hungatei JF-1] Length = 723 Score = 356 bits (914), Expect = 7e-96, Method: Composition-based stats. Identities = 122/781 (15%), Positives = 233/781 (29%), Gaps = 103/781 (13%) Query: 13 AIHNGFKLIPLRLGDKRPQRLGKWEE---QLLSSEKIDKLPAC--GFGFVCGVGEQPLYA 67 A+ + ++IP++ G K+P KW+ L I +G + + L Sbjct: 23 ALGDNIRVIPVKPGIKKPIG-DKWQNENNHPLDYRGIHYWFKNGNNYGII---PQGDLVI 78 Query: 68 FDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKK----------K 117 D D + + + + + VR I F + G KK Sbjct: 79 LDADEPE-----KLGEVIDYIGDSLTVRTP-SGGYHIYFYCAELGTKKIILYEFEENHDG 132 Query: 118 TTESTQGHLDIL--GCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFK 175 + +I GC + V Y ++ D D + + + Sbjct: 133 KRKKGLHLAEIYMAGCRGFVVGAGSRTDKG-VYRVVNASAPRRLPDPG-----DFKRIIR 186 Query: 176 FFQEITVPLVKDKKSIIPSKTWT--NNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVV 233 F++ K + N Y + E L Sbjct: 187 PFRDDIKYDDGSHKQNQKERDSIPKLYKNEVYQDGERNNALISLAGRLVGTG-------- 238 Query: 234 MAVHHETRGSSKGKEIARRWSKQG-STYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFY 292 T S + ++ + + T DE + + E Sbjct: 239 -----ITDESELFRMLSDANNNRCIPTLDEADVQRIARSALRYEPNQRRP---------- 283 Query: 293 HHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKIT 352 +D N F + AW +IW L + Sbjct: 284 --------------LTDLGNGERFFDMHGETTKFIP---AW-----QKWFIWDGHLWRED 321 Query: 353 ASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAG 412 + V L E ++ + + + S A Sbjct: 322 R-KQEIRKLANKTVRSLYVEASKIEEDDLRKKLVSWARASESASKIQALLTSAAA----- 375 Query: 413 SIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDL 472 + + + D+ ++G +L + + + +TK + + Sbjct: 376 -LVADVPESFDNKPDLFNLKNGTYNLHSHEFRDHLQADMLTKCGNFSYEPNASCPVWEKH 434 Query: 473 VSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVI 531 + F + ++ F G + L GN + F+ G G +GK ++L+K+ G+ Sbjct: 435 IQTIFLNDQSLIGSFQELCGYSFLSGNPDEIFVICHGSGRNGKGKTLDLLKHLHGDYAKT 494 Query: 532 NAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARL 591 + + + +P L RL SR+VI SET ++ + IK+++G D ++AR Sbjct: 495 ADFKTFLTPSYTNSGSNPSPDLARLYRSRLVIASETGNGSVLDESIIKRLSGNDTISARF 554 Query: 592 NYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQ-KLETK 650 E F F+ N + D A R ++PF+ +D Sbjct: 555 L-RQEIFEYTPEFVIFLQMNPIPRFNDWDKAIENRLWLVPFNHYFEPKDRDPDILDKFKA 613 Query: 651 YTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEE 710 + W ++G+K Y + G + A E R+ D+ +I+DCC + + Sbjct: 614 ESAGIFCWCMEGLKRYQALG-RLTRAAAIETACESVRKENDSISCFIEDCCTL--SGKIS 670 Query: 711 SHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLK 770 L Y+ + D R T L +K K + R ++G+ Sbjct: 671 RKDLYNHYAVWC---GGVDMCPEVPRKFTSALLKK------HGVKDGVKSNGVRYLQGIS 721 Query: 771 L 771 + Sbjct: 722 I 722 >gi|291336267|gb|ADD95832.1| predicted ATPase [uncultured organism MedDCM-OCT-S09-C213] Length = 890 Score = 356 bits (914), Expect = 7e-96, Method: Composition-based stats. Identities = 114/644 (17%), Positives = 231/644 (35%), Gaps = 54/644 (8%) Query: 175 KFFQEITVPLVKDKKSIIPSKTWTNNNNRQY-TNREITAFLSCFGEEFYNGSHDEWIPVV 233 K + ++ + I P +T + + N ++ L+ +EWI V Sbjct: 255 KRLKPSLPAPMEVNRRIKPKRTREERQDLDFHNNIDMVKRLTAMLSRKRAEDRNEWIRVG 314 Query: 234 MAVHHETRGSSKGKEIARRWSKQGS-TYDEENFNYKWD-------TFDFEEIGDTAKKRS 285 +++ G + ++I +S+Q +DE +W+ + + + Sbjct: 315 WILYNIGNGCDEARDIWLDFSRQCDDKFDETECITQWNRMVKKDYSIGSLRHFASVDNPT 374 Query: 286 TFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNV-YIW 344 + L + K + L +D +A++ +Y + K WY+ + I Sbjct: 375 AYDKLRDENVKKYIQQSLGGSHND-IARALYELYGTEFICASIRHKLWYQYQNHRWREIE 433 Query: 345 SLTLDK--ITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKA 402 K I+ SI+ S+ +D FD +D + + +++ Sbjct: 434 EGIYLKKRISTSILQKYSSLSKDYFDKLANAQDQGEQAMYKERIKQLMKLVNSLKSAPFK 493 Query: 403 KSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVE 462 + + + L+ + +G Q+G+ D + + + YI+ + Sbjct: 494 NNVMRECMEVFYDGSFTKKLNKNPYLVGFQNGVYDTRIHAFREGSPDDYISLQMAIEYKR 553 Query: 463 GE----PSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLM 518 Q+ D +S F + V DYF +GGN+++ G G + KS Sbjct: 554 FNETALEVQQVNDFLSKVFPDKSVRDYFLDTSSDVFVGGNQSKIVQVWSGEGDNAKSVTQ 613 Query: 519 NLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRL-MGSRIVIISETNENDEINAAK 577 L + G+ V S I+ R ++ A P L+R G R ++ E ++ D IN Sbjct: 614 TLFEKMLGDYSV-KLPTSLIIGKR-TQSSAACPELVRAGNGVRFAVLQEPDQKDVINIGI 671 Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637 +K+++G D AR + E F ++ N+ + D A W R ++PF+ Sbjct: 672 LKELSGNDTFFARGLFKEG-GEITPMFKLILICNEPPQLPYGDKAVWNRIRLLPFEATFC 730 Query: 638 N----------------RDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLK 681 + +D FA K+ +EA + L + + + +D P Sbjct: 731 DDAPDTFEEQLLQKRFPKDRQFADKI--PGMIEAFAYMLLEHRKIVKQRID---PPKVKM 785 Query: 682 AKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLN 741 A E R+ D Y+ +I++C L ++ E+ ++ L + + +T Sbjct: 786 ATEGYRKKNDIYRQFIEECIIDDAKAKISLLELYTAFKEWFKESLPNHQIPVKNDVLTY- 844 Query: 742 LKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDNSNII 785 K E G +++ + VD + I+ Sbjct: 845 -----------FTKSWGEPGRGVRWMGKRMRKLQDDVDSGNAIV 877 >gi|239638085|ref|ZP_04679044.1| phage primase [Staphylococcus warneri L37603] gi|239596368|gb|EEQ78906.1| phage primase [Staphylococcus warneri L37603] Length = 769 Score = 355 bits (910), Expect = 2e-95, Method: Composition-based stats. Identities = 138/798 (17%), Positives = 259/798 (32%), Gaps = 89/798 (11%) Query: 6 WKEQAKQAIHNGFKLIPLRLGDK---RPQRLGKWEEQLLSSEKIDKLPACGFGFVC---- 58 W + + IP + W + G GF Sbjct: 19 WCVWKFEKRNGKRTKIPFNAETGEFAKSNDKSTWSSYETAVNA---EGVDGIGFFFEPPY 75 Query: 59 -GVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKK 117 G+ + K + F + + I + K Sbjct: 76 LGIDIDDIDDDLHRFKQGDKLDNIVSEFNEAFKSYTEVSPSGNGLHIIVK------GKIP 129 Query: 118 TTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFF 177 + +G++++ G++F KT +Y D +SE+ + +++ + Sbjct: 130 GSRRRKGNIEMYDSGRFFTMTG---KTIGKYK-----------DVTEVSEQVFKTIYEKY 175 Query: 178 QEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHD----EWIPVV 233 VK + + N + N + + ++ G+++ Sbjct: 176 LPDN--TVKYPTTNNYQQNIHNLSEIDVINEIYKSKQAKLFDDLMKGNYEPYYTSHSEAD 233 Query: 234 MAVHHE---------------TRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFD--FEE 276 MA+ + R S+ ++ ++ STY E+ + + + Sbjct: 234 MALANILAFWCARDYSQMDSIFRQSNLYRDKWDE-KRKNSTYGEQTLFKAINEANNIYTP 292 Query: 277 IGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKK 336 T + + K + D N F + Y+ +Y Sbjct: 293 KQQTEDNPLRYALSKLFDKQEETKEFPIRSYDDTGNADRFIDRYGNLYKYSYIANKFYIY 352 Query: 337 DKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNV 396 D I SI + M E + D D+ ++ F+ + + Sbjct: 353 DGMKWKIDD------KGSIRKLIDEMIESIKDEKIIHGDDVTEEEAREFFQKYYKKTRGT 406 Query: 397 EENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKST 456 + + T D D + +G +DL + + K ++ T Sbjct: 407 QAKKNIMNELMHRRPA-----TPDDFDRDDMLINVANGYIDLTSRELYKHDINKMFSQIT 461 Query: 457 GTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKS 515 T + E +LD ++ F +EV+ Y + +G +L G + Q + G G +GKS Sbjct: 462 NTDYTEKMQPAVWLDFLNDIFAGDQEVIRYIQKALGYSLTGSTREQIMFILFGKGRNGKS 521 Query: 516 TLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA 575 + +I G+ S +++ N + RL +R V SE NE + Sbjct: 522 IFVEVISEILGDYSNNMQAKSLMVKKN----DNVNTDIARLSKARFVTSSEPNEGFRFDE 577 Query: 576 AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP 635 IKQ+TGGD +TAR Y + E F ++ N +R DD WRR ++IPFD Sbjct: 578 GLIKQLTGGDKVTARFLYAEEF-EYTPKFKIWVSTNHKPIIRGTDDGIWRRLVLIPFDVQ 636 Query: 636 IANR--DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTY 693 I D KL W +G ++ +GL +PE +A + R D Sbjct: 637 IPEEKVDKDLKYKLLR-EAPAILNWMAEGAYMWMQEGL--AMPEKLKEASKAYRNEMDVI 693 Query: 694 QAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKR 753 + +I+D C + ++H L + Y ++ Y +S + +K+K Sbjct: 694 EQFIEDECKRVDGGKVKAHELYELYKKWANDNGAYK---MSNKDFGQKMKEK-------- 742 Query: 754 EKIEKEWKSKRIIKGLKL 771 K S GL++ Sbjct: 743 -FEYKRITSGMFYFGLEI 759 >gi|283853499|ref|ZP_06370741.1| phage/plasmid primase, P4 family [Desulfovibrio sp. FW1012B] gi|283571124|gb|EFC19142.1| phage/plasmid primase, P4 family [Desulfovibrio sp. FW1012B] Length = 830 Score = 353 bits (906), Expect = 6e-95, Method: Composition-based stats. Identities = 123/787 (15%), Positives = 241/787 (30%), Gaps = 98/787 (12%) Query: 39 QLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDT------FEILHGTP 92 Q E + +CG +ID ++ ++ IL G P Sbjct: 69 QKTKPEPGKRGTGANTAAICG------VWIEIDCQEGVHKEKTENLPTKEQALGILKGLP 122 Query: 93 IVRI---GQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAY-----NIHPKT 144 ++ + ++ + T + Q D++ Q VA+ T Sbjct: 123 VIPTVIMDSGGGYHAHWWLDAPLV--FTTDDERQHGQDLVRRFQQAVAHVFHQQGFKVDT 180 Query: 145 KKEY-----------TWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIP 193 + + P V+ V+YL T P+ + Sbjct: 181 TSDLARVLRPPHTFNHKSGQPVMVTVDHYDASLRYRVDYLDACCPPATPPIPTSVLPMPT 240 Query: 194 SKTWTNNNNRQYTNREITAFLSCFGEE-FYNGSHDE--------WIPVVMAVHHETRGSS 244 + + + ++ + D+ W + V G Sbjct: 241 TPSAGPSGGQELVQYPPVELQPIIDGCAWLRHCRDDAATLPEPEWFAALSIVVRCVNGEQ 300 Query: 245 KGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHG--------- 295 + + S Y + K A + + + Y Sbjct: 301 QAHAL----SSSYPGYSAVETDGKIRHAQAGGPRTCANIQGSLNAAAYCATCPHLSNGSS 356 Query: 296 -------KLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTL 348 K +DA N +F+ Y + W+ D Sbjct: 357 PITLGFLKTSIAQGAGFNMTDAGNMDIFAKANAADTRYVWVWQLWFLFDDVRWQE----- 411 Query: 349 DKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQS 408 + + + DL+++ + + +T + Sbjct: 412 ----DKVGSIYQKAIATLRDLADQAKQLLPPKTAGYIIEHTLSSESRASLG----NMLAL 463 Query: 409 LEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE 468 ++ + ++ D+ L +G +DL+ +E +TK G + Sbjct: 464 AKSHPALAAVPEMFDADPWLLNLPNGTMDLKQQTFRSHAREDMLTKVAGVAYDPTSTCPL 523 Query: 469 FLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 +L + ++ ++ + R G L+G Q I + G G +GKS + ++++ G Sbjct: 524 WLAFLVTIMAGNQALIGFLQRFAGYTLVGEVSEQSLILLYGTGANGKSVFLEILRFVLGE 583 Query: 528 QYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCM 587 + + + RL+G+R V E+ + A IKQ+TGG+ + Sbjct: 584 YAMQADFTTFTATK----GQNVRNDIARLVGARFVTAVESEYGTPLAEAVIKQVTGGEPI 639 Query: 588 TARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQ 645 AR + + + FT ++ N ++ D WRR ++PF I +D+ Sbjct: 640 VARFLFKE-FFQFYPQFTLWLASNHKPIIKGGDHGIWRRIKLVPFAVTIPPEQQDSDLPS 698 Query: 646 KLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE 705 KL W L+G + + +GL+ P + A E R D ++D+ C +G Sbjct: 699 KL-KAEAPGILNWMLEGSREWQRQGLNP--PAEVMAAVSEYRGEMDLLAEFLDEKCVLGL 755 Query: 706 NLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRI 765 ++ L K+Y E+ E E + + + L Q+GF K I Sbjct: 756 GEKVKAKDLYKAYREFCEAEGEF---VLGKKRFADLLLQRGF---------RKAKIGDMI 803 Query: 766 IKGLKLK 772 GL LK Sbjct: 804 WSGLGLK 810 >gi|120599012|ref|YP_963586.1| P4 family phage/plasmid primase [Shewanella sp. W3-18-1] gi|120559105|gb|ABM25032.1| phage / plasmid primase, P4 family [Shewanella sp. W3-18-1] Length = 906 Score = 353 bits (904), Expect = 9e-95, Method: Composition-based stats. Identities = 108/484 (22%), Positives = 195/484 (40%), Gaps = 25/484 (5%) Query: 300 KGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFL 359 +D N + G +Y + Y D+ + I + Sbjct: 422 DAFDEDTLNDVGNADRLAEVADGKLVYVPELNCLYMFDEQCWRPIGDKELALARCIGEGI 481 Query: 360 VSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITS 419 ++ + + +D K ++ + N K + + S I++ Sbjct: 482 IAQANRMLEDPATLKDKTKRQQADKLLAFGRQSL-----NRKKLADMLEIFKSSNL-ISA 535 Query: 420 DLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-E 478 D+ +G +G+LDL TG+ + KE+YI++ + + +L + Sbjct: 536 KAFDADKMLMGINNGVLDLATGKLLAANKEMYISRYSDINYKPDVTCPRWLQFIDEITCG 595 Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538 E + R VG L G Q + G G +GKST MN+I+ G+ Y + + Sbjct: 596 DVEYAKFLQRMVGYILTGRTDEQVLFFLYGHGCNGKSTFMNIIQRLMGSYYHQISSDVLL 655 Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598 N NPSL +L GSR+V+ +E E ++ +K MTG D + AR Y Sbjct: 656 QSNN--SGKGPNPSLAKLNGSRLVVANELPEGSRMDENLVKSMTGSDVIVARQLYAKVEL 713 Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAK 656 E F +V N +R+ WRR I++PF+ + + D KL Sbjct: 714 EYIPMFKLIMVGNHKPVIRDTSLGMWRRMILLPFNASFSQQQMDPQLMDKLY-AELSGIL 772 Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAK 716 W L+GV+ ++ G+ IP E R +D ++++C + G+ + + L Sbjct: 773 NWALEGVQMWLKDGIKASIPNSIKSGIAEYRHESDLLAMFLEECTNKGD--FVYTDELYD 830 Query: 717 SYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFE 776 ++ ++ E++ ++ ++ +T L +KGF G SK +IKG+KLK AF+ Sbjct: 831 AFRKWAERDGDWK---MTRNIMTKRLVEKGFEKG--------RHNSKAMIKGIKLKSAFD 879 Query: 777 SVDD 780 + + Sbjct: 880 DIPE 883 >gi|314933979|ref|ZP_07841344.1| putative nucleoside triphosphatase, D5 family [Staphylococcus caprae C87] gi|313654129|gb|EFS17886.1| putative nucleoside triphosphatase, D5 family [Staphylococcus caprae C87] Length = 769 Score = 352 bits (902), Expect = 2e-94, Method: Composition-based stats. Identities = 133/785 (16%), Positives = 254/785 (32%), Gaps = 89/785 (11%) Query: 19 KLIPLRLGDK---RPQRLGKWEEQLLSSEKIDKLPACGFGFVC-----GVGEQPLYAFDI 70 IP + W + G GF G+ + Sbjct: 32 TKIPFNAATGEFAKSNDKSTWSSYETAVNA---EGVDGIGFFFEPPYLGIDIDDIDDDLH 88 Query: 71 DSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILG 130 K + F + + I + K + +G++++ Sbjct: 89 RFKQGDKLDNIVSEFNEAFKSYTEVSPSGNGLHIIVK------GKIPGSRRRKGNIEMYD 142 Query: 131 CGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEIT--VPLVKDK 188 G++F + K +D +SE+ + +++ + + Sbjct: 143 SGRFFTMTG--------------KNIGKYKDVTEVSEQVFKTIYEKYLPDNTVKYPTTNN 188 Query: 189 KSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHE--------- 239 + + N + + Y + MA+ + Sbjct: 189 YQENIHNLSEIDVINEIYNSKQAKLFDDLMKGNYEPYYTSHSEADMALANILAFWCAKDY 248 Query: 240 ------TRGSSKGKEIARRWSKQGSTYDEENFNYKWDT----FDFEEIGDTAKKRSTFTS 289 R S+ ++ ++ STY E+ + + ++ D R + Sbjct: 249 SQMDSIFRQSNLYRDKWDE-KRKNSTYGEQTLFKAINEANNIYTPKQQTDDNPLRYALSK 307 Query: 290 LFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLD 349 LF + + K + D N F + Y+ +Y D + Sbjct: 308 LFDNQEET--KEYPIRSYDDTGNADRFIDRYGNLYKYSYIANKFYIYDGMKWKVDD---- 361 Query: 350 KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSL 409 SI + M E + + ++ ++ F+ + + + + Sbjct: 362 --KGSIRKLIDEMIESIKNEKVLHSEDVTEEEAREFFQKYYKKTRGTQAKKNIMNELMHR 419 Query: 410 EAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF 469 T D D L +G +DL + + K ++ T T + E + Sbjct: 420 RPA-----TPDEFDKDDMLLNVANGYIDLTSRELYKHDINKMFSQITNTDYTEKMQPAVW 474 Query: 470 LDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 LD ++ F + V+ Y + +G +L G + Q + G G +GKS + +I G+ Sbjct: 475 LDFLNDIFAGDKAVIRYIQKALGYSLTGSTREQIMFILFGKGRNGKSIFVEVISEILGDY 534 Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588 S +++ N + RL +R V SE NE + IKQ+TGGD T Sbjct: 535 SNNMQAKSLMVKKN----DNVNTDIARLSKARFVTSSEPNEGFRFDEGLIKQLTGGDKAT 590 Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQK 646 AR Y + E F ++ N +R DD WRR ++IPFD I D K Sbjct: 591 ARFLYAEEF-EYTPKFKIWVSTNHKPIIRGTDDGIWRRLVLIPFDVQIPEEKVDKDLKYK 649 Query: 647 LETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGEN 706 L W +G ++ +GL +PE +A + R D + +I+D C ++ Sbjct: 650 LLR-EAPAILNWMAEGAYMWMQEGL--AMPEKLKEASKAYRNEMDVIEQFIEDECKRVDD 706 Query: 707 LWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRII 766 ++H L + Y ++ + NY +S + +K+K K S Sbjct: 707 GKVKAHELYELYKKWADDNGNYK---MSNKDFGKKMKEK---------FEYKRITSGMFY 754 Query: 767 KGLKL 771 GL++ Sbjct: 755 FGLEI 759 >gi|160898867|ref|YP_001564449.1| P4 family phage/plasmid primase [Delftia acidovorans SPH-1] gi|160364451|gb|ABX36064.1| phage/plasmid primase, P4 family [Delftia acidovorans SPH-1] Length = 857 Score = 350 bits (898), Expect = 5e-94, Method: Composition-based stats. Identities = 150/850 (17%), Positives = 266/850 (31%), Gaps = 121/850 (14%) Query: 12 QAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDID 71 NG P + L + + + + G GF + + A D D Sbjct: 36 PFYANGA---PRNGEQGTAEDLAQLTTFDAAVHAVRERGYTGLGFA-PIANGGIVALDFD 91 Query: 72 SKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGH------ 125 T ++ T + + K G Sbjct: 92 GCVSGGQITDARIEALISDTYAEFSPSGTGLRAFYLGAMASRKDNAHKSKRVGGQAGAAR 151 Query: 126 ------LDILGCGQYFVAYN-IHPKTK--------------------KEYTWTTPPHRFK 158 ++ G + P T+ + + T P Sbjct: 152 LDGLFDIEFFGHNGFVTVTGKATPDTQLWGLQDTVAPLSQGVQQLYAQRFGDTGPLPAVG 211 Query: 159 VEDT----------PLLSEEDVEYLFKFFQEITVPLVKDKKSIIP---------SKTWTN 199 P ++ ++ + + + + S+ + Sbjct: 212 AVALAGEANLAALGPEKLGWTMDQAREYLFDCKASVSRAEWLNALMALHHEFDGSEDALD 271 Query: 200 NNNRQYTNREITAFLSCFGEEFYNGSHD------------EWIPVVMAVHHETRGSSKGK 247 + + A + + D W MA ++ R Sbjct: 272 LADEWSATGDSYAGRKDVEGRWDSFGRDRGGAPITGRWLLSWRRDQMAASNDERMRGALA 331 Query: 248 EIAR-----------------RWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSL 290 E+ R S+ + + A ++ F L Sbjct: 332 EMQRLLKEAPDMLTLQTRVMPDVSRLLLEFPILEIEAYSLVAGRAKEFGLAINKTEFKKL 391 Query: 291 FYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDK 350 + P + ++ N ++ DT WY +W+ + Sbjct: 392 IK--VERPPAAAAVAPLTEFGNTERMLARYGDSLMFCPDTATWY--------VWTGVYWR 441 Query: 351 ITASIMNFLVSM-KEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSL 409 + KE + DL E + + F F + +R + + + Sbjct: 442 TAMGGNTEVAHYAKETIKDLPSEAASHADPGEF--FAFCSLSQRAAM-----VAAMVKLA 494 Query: 410 EAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF 469 E+ + S LD LG ++G++DL TG + + EL IT S G + G F Sbjct: 495 ESDPRVCVPSSELDKHRHLLGVKNGVVDLRTGVLMPASPELRITLSAGCEYNPGAKCPLF 554 Query: 470 LDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 + F + E+++Y R G AL G + G G +GKST+ N ++ FG Sbjct: 555 EQTLRDVFFDDLEMVEYVARTFGYALQGQPREDMMFIAFGNGANGKSTIFNAVRKVFGGY 614 Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588 AS I AG L+RL G+R V ++E +E E+ +K MTGGD +T Sbjct: 615 ARSADAASFISDAMGGNAGGPREDLLRLRGARFVYVNEPDEGGELREGAVKAMTGGDAIT 674 Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN-----RDASF 643 AR E ++T ++ N ++ D+ WRR ++PF++ N +D Sbjct: 675 ARGIQAKHSIEIEPTWTVYMPTNHKPIIKGTDNGIWRRMGLLPFERDFRNDPHIVKDDQR 734 Query: 644 AQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDI 703 +KLE ++ Y GL+ P L A + R+ D WI++CC+I Sbjct: 735 REKLE-AELPGILALIVRAGMRYRQSGLNP--PAKVLAASADYRKDMDLLGEWIEECCEI 791 Query: 704 GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSK 763 ENL + L +S+ Y + R S++ + L R +K K Sbjct: 792 DENLHTKVSDLWESWETYARRRG-LVRFISSSKALGRRLDS--------RFPSDKGSKGV 842 Query: 764 RIIKGLKLKP 773 RI +G+ L+ Sbjct: 843 RIRRGIGLRD 852 >gi|169347120|ref|ZP_02866062.1| D5 N like family [Clostridium perfringens C str. JGS1495] gi|169296803|gb|EDS78932.1| D5 N like family [Clostridium perfringens C str. JGS1495] Length = 756 Score = 350 bits (898), Expect = 5e-94, Method: Composition-based stats. Identities = 124/777 (15%), Positives = 242/777 (31%), Gaps = 65/777 (8%) Query: 19 KLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPA--CGFGFVCGVGEQPLYAFDID--SKD 74 + +P K+ + + LS E + G G ++ L A DID D Sbjct: 24 RKVPYNPITKKAVSVKNPSDF-LSYEIVLPFRKNYDGLGVRV---DKNLVAIDIDNCVVD 79 Query: 75 EKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQG-HLDILGCG- 132 K +D + K L F + + + T +G ++++ G Sbjct: 80 GKLTTLGQDIV-NHFPNSYIEYSPSGKGLRLFCLMNDSFQYDTTQYKMKGKNVEVYVGGY 138 Query: 133 --QYFVAY------NIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPL 184 ++ TW H + + T + + + Sbjct: 139 TNRFVTVTENIYQEGDINVCTDALTWLLTTHLKREKRTSKTIQAQS---YLSDASVIQKA 195 Query: 185 VKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSS 244 K + W+ + + ++ E L + G ++ + R SS Sbjct: 196 SSAKNADKFKSLWSGDISNCSSHSEADLALCSILAFYCGGDKNQ-------IDRLFRNSS 248 Query: 245 KGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLA 304 +E TY ++ F L Sbjct: 249 LFREKWDEI-HGNDTYGNLTIEKAVNSLTSV---YKPINLDEFNDELTRLKHDFNFPLGN 304 Query: 305 -SRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMK 363 ++D +F+ + + Y + K+W+ + + + + S+ Sbjct: 305 MYAWNDIGAGKLFADFYQEILRYVPERKSWFIYQDG--------IWQKDTGNIVAMKSVM 356 Query: 364 EDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLD 423 E + D K F + + + S K +A I D Sbjct: 357 ELANLIYLCAIDITDEDKRKTFQRFSSKWQSHSYRVSILK------DAQVYHPIKVSDFD 410 Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEV 482 L +G L+ + +TK + S F + E Sbjct: 411 KDIYMLNCLNGTYHLKNKCFYPHQSKDLLTKKANVSYEPQAKSHRFNSFIDEIMTGDNEK 470 Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRG-VGGSGKSTLMNLIKYAFGNQYVINAEASDIMQN 541 + + +G L G + + + G +GK TL I G + ++ Sbjct: 471 SSFLQKILGYGLSGDTRHECLFILYGVTTRNGKGTLCETILNLLGTYACTARSETIALK- 529 Query: 542 RPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESP 601 + + + RL G R V ISE + +N A++K MTG D + AR + N++ + Sbjct: 530 -QNNSQGPSEDVARLAGVRFVNISEPQKGLVLNVAQVKSMTGNDTLNARFLHENSF-DFK 587 Query: 602 ASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDASFAQKLE-TKYTLEAKKW 658 F +I N V + R +IPFDK RD + Q+ W Sbjct: 588 PQFKLYINTNYLPSVTDLTIFKSDRIWIIPFDKHFNEEMRDITLKQQFTSEPVKSAILNW 647 Query: 659 FLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSY 718 ++G A +GL +P+V +A + D + +I+DC ++G E++ + Y Sbjct: 648 LIQGYDALQREGL--SVPKVVKEATHQYEHDNDKIKLFIEDCLELG-GFEEKTSDIYYRY 704 Query: 719 SEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAF 775 ++ + + S + +L + I R++ + ++ G +L F Sbjct: 705 KQWCLENGQFAE---SMKNFKQSLSSQ---FSIVRKRPKGGGNKTTLLVGARLVSDF 755 >gi|120601927|ref|YP_966327.1| hypothetical protein Dvul_0879 [Desulfovibrio vulgaris DP4] gi|120562156|gb|ABM27900.1| plasmid/phage primase, P4 family [Desulfovibrio vulgaris DP4] Length = 738 Score = 350 bits (898), Expect = 5e-94, Method: Composition-based stats. Identities = 113/475 (23%), Positives = 186/475 (39%), Gaps = 43/475 (9%) Query: 304 ASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMK 363 A ++ F+ K Y +T AWY IW T ++ + + F Sbjct: 300 AYPATEDSIALAFANRYKDDLRYCHETGAWY--------IWRGTHWEMERTRLAF----- 346 Query: 364 EDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLD 423 + V +L E ++ K + + + S + ++ F++TS + D Sbjct: 347 DMVRNLCRETAAALESKKLA----------STLSKAATVGSVERLAQSDRHFAVTSGIWD 396 Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSG-YFESEEV 482 + LG DG++DL +G + +E +ITK+T + + + + Sbjct: 397 ADHYLLGTPDGVVDLRSGVLLPARREDFITKTTTVAPAASSEAPLWSRFLHEATQGDVAL 456 Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542 + + G AL G I G GG+GKS +N I G A + + Sbjct: 457 QRFMRQIAGYALTGDISEHALFFIYGPGGNGKSVFLNTINNILGAYTATAAMDTFVASK- 515 Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602 + L L G+R+V +SET E ++IKQ+TGGD +TAR + Sbjct: 516 ---GDRHPTDLAMLRGARLVSVSETEEGRAWAESRIKQLTGGDQVTARFM-RQDFFTFTP 571 Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKG 662 F IV N ++N DDA RR+ +IPF A D +KL +W ++G Sbjct: 572 QFKLLIVGNHKPVLKNVDDAARRRFNIIPFVHKPATPDKQLEEKL-RAEYPAILRWMIEG 630 Query: 663 VKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYR 722 + GL PE +A D + WI++CC++G E + +L S+ Y Sbjct: 631 CLDWQENGL--VRPESVREATASYFDEQDLFGQWIEECCEVGAMYSETTTALFDSWKSYA 688 Query: 723 EQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFES 777 E+ S + + NL ++GF G S R G+K K + Sbjct: 689 ERNGE---HPGSAKAFSANLCKRGFTSG--------RTMSSRYFSGIKKKKEQDW 732 >gi|302344019|ref|YP_003808548.1| phage/plasmid primase, P4 family [Desulfarculus baarsii DSM 2075] gi|301640632|gb|ADK85954.1| phage/plasmid primase, P4 family [Desulfarculus baarsii DSM 2075] Length = 749 Score = 349 bits (896), Expect = 8e-94, Method: Composition-based stats. Identities = 117/585 (20%), Positives = 216/585 (36%), Gaps = 51/585 (8%) Query: 210 ITAFLSCFGEEFYNGSHDEWIP---VVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFN 266 + A + G + ++ + VV+ ++T G + + +A+ ++ Sbjct: 200 LAAACNPMGAGKWREEYNPYFQGKQVVILPDNDTPGRNHARSVAKALLFVATSVKIVELP 259 Query: 267 YKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGL---------LASRFSDAYNKAMFS 317 D + R L L P ++ +F+ Sbjct: 260 GLPPKGDIVDWKKAGHGRDELLGLVEAVEALDPAHPDDSNDACPATPYPATEDAIALLFA 319 Query: 318 IYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNN 377 K Y +T AW+ +W+ + ++ + + F ++ + + Sbjct: 320 REHKDDLRYCHETGAWF--------VWTGSHWRVEKTRLAF-AWARKLCRKAAAGMDS-- 368 Query: 378 KNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILD 437 + AQ+ A F++TS++ D+ LG DG++D Sbjct: 369 ---------KKVAATLSKAATAGAVERFAQTDRA---FAVTSEIWDADLHLLGTPDGVVD 416 Query: 438 LETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSG-YFESEEVMDYFTRCVGMALLG 496 L TG +E Y+TK + + + + + + G AL G Sbjct: 417 LRTGTLRPARREDYLTKLAAVAPARSSDAPLWRRFLDEATQGDAMLQRFMQQVAGYALTG 476 Query: 497 GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRL 556 I G GG+GKS +N + G+ A + + + L L Sbjct: 477 DISEHALFFIYGPGGNGKSVFLNTLTNILGDYAATAAMDTFTA----SQGDRHPTDLAML 532 Query: 557 MGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV 616 G+R+V +SET E ++IKQ+TGGD ++AR + F IV N + Sbjct: 533 RGARLVSVSETEEGRPWAESRIKQLTGGDKISARFM-RQDFFTYTPQFKLLIVGNHKPVL 591 Query: 617 RNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIP 676 RN D+A RR+ +IPF A+ D KL +W ++G + GL P Sbjct: 592 RNVDEAARRRFNIIPFVHKPASPDKRLEDKL-RAEYPAILRWMIEGCLDWRENGLL--RP 648 Query: 677 EVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTR 736 E +A D + WI++CC++G+ WE + L +S+ Y ++ ST+ Sbjct: 649 ESVKEATAAYFDEQDLFGQWIEECCEVGKASWETTARLFESWKNYADRNGE---HAGSTK 705 Query: 737 TVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDN 781 + NL ++ FI ++ ++RI +G+ +K + D Sbjct: 706 AFSANLAKREFI----ADRRTVFGSTQRIFRGIAVKVEHDGRLDG 746 >gi|217973530|ref|YP_002358281.1| P4 family phage/plasmid primase [Shewanella baltica OS223] gi|217498665|gb|ACK46858.1| phage/plasmid primase, P4 family [Shewanella baltica OS223] Length = 900 Score = 348 bits (891), Expect = 3e-93, Method: Composition-based stats. Identities = 105/487 (21%), Positives = 193/487 (39%), Gaps = 25/487 (5%) Query: 297 LIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIM 356 I +D N F++ +Y + Y D + ++ + Sbjct: 422 SILTEFNEDTLNDVGNADRFNVLFDERVVYVPELNTTYFYDGRKWAPSNGRELELARRVG 481 Query: 357 NFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFS 416 +++ + E NK+ + K + ++G+ Sbjct: 482 EQIITQA----NWMVEESVKNKDKSMHEEAGQLLKFGRQTLNRKKMADMLEVFKSGN--Q 535 Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY 476 I++ DS +G +G+LDL G+ + K +YI++ + + +L + Sbjct: 536 ISASRFDSDPMKMGISNGVLDLTKGKLLAAKKRMYISRYSDITYDSSATCPRWLQFIDEI 595 Query: 477 F-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535 +E + R VG L G Q + G G +GKST MN+I+ G+ Y + Sbjct: 596 TCGDKEYAKFLQRIVGYILTGRTDEQVLFFLHGHGCNGKSTFMNVIQRLMGSYYHQISSD 655 Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595 + N + NPSL +L GSR+V+ +E E ++ +K MTG D + AR Y Sbjct: 656 VLLQTNN--SSKGPNPSLAKLTGSRLVVANELPEGSRMDENLVKSMTGNDVIVARQLYAK 713 Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTL 653 E F +V N +R+ WRR I++PF+ + D KL Sbjct: 714 VELEYTPMFKLIMVGNHKPVIRDTSPGMWRRMIMLPFNASFSQEQMDPLLMDKLY-AELS 772 Query: 654 EAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHS 713 W L+GV+ ++ G+ IP E R +D ++++C G+ + + Sbjct: 773 GILNWALEGVQMWLKDGIKASIPNSIKSEIAEYRHESDLLAIFLEECTCKGD--FTYTDM 830 Query: 714 LAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773 L ++ ++ E++ ++ ++ +T L +KGF G SK +IKG+ LK Sbjct: 831 LYDAFRKWAERDGDWK---MTRNIMTKRLVEKGFEKG--------RHNSKAMIKGINLKS 879 Query: 774 AFESVDD 780 F+ + + Sbjct: 880 VFDDISE 886 >gi|302343981|ref|YP_003808510.1| phage/plasmid primase, P4 family [Desulfarculus baarsii DSM 2075] gi|301640594|gb|ADK85916.1| phage/plasmid primase, P4 family [Desulfarculus baarsii DSM 2075] Length = 744 Score = 346 bits (887), Expect = 9e-93, Method: Composition-based stats. Identities = 122/581 (20%), Positives = 218/581 (37%), Gaps = 46/581 (7%) Query: 209 EITAFLSCFGEEFYNGSHDEWIP---VVMAVHHETRGSSKGKEIARRWSKQGSTYDEENF 265 E+ A + G + ++ + VV+ ++T G + + +A+ + Sbjct: 199 ELAATCNPMGAGKWREEYNPYFQGKQVVILPDNDTPGRNHARRVAKALLSVAVSVKIVEL 258 Query: 266 NYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASR----FSDAYNKAMFSIYKK 321 D + R L L P S ++ +F+ K Sbjct: 259 PGLPPKGDIVDWKKAGHSREELLRLVEAAATLDPAKPDDSNDACPATEDAIALLFAREHK 318 Query: 322 GHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSK 381 Y +T AW+ +W+ + ++ + + F ++ + ++ Sbjct: 319 DDLRYCHETGAWF--------VWTGSHWRVEKTRLAF-AWARQLCRKAAAGMDN------ 363 Query: 382 SPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETG 441 + AQ+ A F++TS++ D+ LG DG++DL TG Sbjct: 364 -----KKVAAALSKAATAGAVERFAQTDRA---FAVTSEIWDADLHLLGTPDGVVDLRTG 415 Query: 442 QKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSG-YFESEEVMDYFTRCVGMALLGGNKA 500 +E YITK + +L + + + + G AL G Sbjct: 416 TLRPARREDYITKLAAVAPARSSDAPLWLRFLDEATQGDAMLQRFMRQVAGYALTGDISE 475 Query: 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSR 560 I G GG+GKS +N + G+ A + + + L L G+R Sbjct: 476 HALFFIYGPGGNGKSVFLNTLTNILGDYAATAAMDTFTA----SQGDRHPTDLAMLRGAR 531 Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620 +V +SET E ++IKQ+TGGD ++AR + F IV N +RN D Sbjct: 532 LVSVSETEEGRPWAESRIKQLTGGDKISARFM-RQDFFTYTPQFKLLIVGNHKPVLRNVD 590 Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCL 680 +A RR+ +IPF A+ D KL +W ++G + GL PE Sbjct: 591 EAARRRFNIIPFVHKPASPDKRLEDKL-RSEYPAILRWMIEGCLDWRENGLL--RPESVK 647 Query: 681 KAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTL 740 +A D + WI++CC+IG WE + L +S+ Y ++ ST+ + Sbjct: 648 EATAAYFDEQDLFGQWIEECCEIGRASWETTARLFESWKNYADRNGE---HAGSTKAFSA 704 Query: 741 NLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDN 781 NL ++ FI ++ ++RI +G+ +K + D Sbjct: 705 NLAKREFI----ADRRTVFGSTQRIFRGIAVKVEHDGRLDG 741 >gi|255020312|ref|ZP_05292380.1| hypothetical protein ACA_2130 [Acidithiobacillus caldus ATCC 51756] gi|254970232|gb|EET27726.1| hypothetical protein ACA_2130 [Acidithiobacillus caldus ATCC 51756] Length = 766 Score = 343 bits (879), Expect = 8e-92, Method: Composition-based stats. Identities = 117/723 (16%), Positives = 218/723 (30%), Gaps = 73/723 (10%) Query: 70 IDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDIL 129 D + F + +G+ + L R E + + + + Sbjct: 86 FDLIAAHHGLDAQTDFARVLEVAGQLVGRAAR-LPSKRKKAEPPTDELGPATAKWDY-LD 143 Query: 130 GCGQYFVAYNIHPKTKKEYTWT---------TPPHRFKVEDTPLLSEEDVEYLFK--FFQ 178 G+ + + + PP + + P + D L + Sbjct: 144 ADGRLIAVVYRYDPPGRRKEFRPWDVKRRRMAPPDPRPLYNQPGIKAADQVILVEGEKCS 203 Query: 179 EITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEW-----IPVV 233 + + + + + + L + + E + Sbjct: 204 QALIDAGFCATTAMHGANAPVDKTDWSPLAG-KSVLIWPDRDKPGFGYAEAASQAVLMAG 262 Query: 234 MAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYH 293 A E +D F + + A + +T + Sbjct: 263 AASCAILLPPDDKPEGWDAADAVAEGFDVAGFVVNGPRMTIQPEQEDAPEHTTDAAH--- 319 Query: 294 HGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITA 353 G + S+ F+ + + Y A AW +W + Sbjct: 320 -------GGASVLGSEDALALSFTRRYQRDWRYVA---AW-----GKWLMWDGQRWR--- 361 Query: 354 SIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGS 413 ++ + + + N++ + + A++ Sbjct: 362 --AEETLAATDLIRHVCRHAAVRADNARLA-------TKLAASSTVGGVERLARTDR--- 409 Query: 414 IFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLV 473 + T D D+ L Q G++DL TG+ + +TK V G ++ + Sbjct: 410 RHAATPDEWDADPWLLNTQGGVVDLRTGRMRPHDRADRMTKIAPATLVPGSACPTWIRFL 469 Query: 474 SGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532 E+ Y R VG L G + G G +GKS +N + G+ Sbjct: 470 EQVTGGDAELQAYLQRMVGYCLTGSTAEHALFFLYGTGANGKSVFVNTLATILGDYAANA 529 Query: 533 AEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLN 592 + + + L L G+R+V +ET + N AKIK++TGGD +TAR Sbjct: 530 PMDTFME----ARGDRHPTDLAGLRGARLVTATETEQGRRWNEAKIKEITGGDRITARFM 585 Query: 593 YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETK 650 + F I N +RN D+A RR +IPF I RD + QKL Sbjct: 586 -RQDFFTYVPQFKLVIAGNHKPAIRNVDEAMRRRLHLIPFTVTIPPERRDKTLQQKL-LA 643 Query: 651 YTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEE 710 W ++G A+ +GL P+ L A +E + D W+++ C N Sbjct: 644 ERDGILAWAVQGCLAWQREGLRP--PQSVLDATDEYFEAEDALGRWLEERCVRDPNAKSL 701 Query: 711 SHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLK 770 L + ++ E + S + + L +G + R +G+ Sbjct: 702 VAELFSDWKQWAEAAGEF---VGSQKRFSDLLLTRGLEK-------WRNGMGLRGFRGVG 751 Query: 771 LKP 773 LK Sbjct: 752 LKE 754 >gi|239906140|ref|YP_002952879.1| hypothetical protein DMR_15020 [Desulfovibrio magneticus RS-1] gi|239796004|dbj|BAH74993.1| hypothetical protein [Desulfovibrio magneticus RS-1] Length = 482 Score = 342 bits (876), Expect = 2e-91, Method: Composition-based stats. Identities = 103/484 (21%), Positives = 176/484 (36%), Gaps = 28/484 (5%) Query: 290 LFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLD 349 L + + D N M + + Y D ++W D ++ +TL Sbjct: 19 LAKMNDASTGQEKTIYSLDDIGNAVMLASIFQNRIRYCEDLRSWLVWDGKHLAKNDVTLW 78 Query: 350 KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSL 409 + I+ + ++L ++ + + ++ ++ Sbjct: 79 RHARLIVRIRFHQAKSKYNLVTTNGIVVSKEDVLKWAIKSASK-------ARMQAMLDVA 131 Query: 410 EAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF 469 + LD Q+G +DL TG+ K +T + + P E+ Sbjct: 132 SILPQMATKLKELDKDEYLFNCQNGTIDLRTGELRKHNLSDMLTHISDVSYRPDAPCPEW 191 Query: 470 LDLVSGY-FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 L V + + +Y +G L G Q + G G +GKST +N G Sbjct: 192 LKFVEDITLGNWHLQEYLQEVLGYCLCGSVSEQIMFVLVGKGANGKSTFLNAFINVLGTY 251 Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588 + + E+ L RL+G+R V E N +++ A +K ++GGD + Sbjct: 252 AKTTPAHTFV----KSESRALRNDLARLVGARFVSAVEINSGKKLDEALVKGLSGGDRVA 307 Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQK 646 AR G + E F+ N V DD +RR VIPFD A D K Sbjct: 308 ARFI-GKEFFEYTPQAKFFLAVNVFPEVSGADDGIYRRLRVIPFDAAFAPHQMDKDKPAK 366 Query: 647 LETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGEN 706 L K W ++G K + + + PEV +A R+ D +++IDD C + Sbjct: 367 L-KKEAEGILAWAVEGFKRWYERK-SLLEPEVVTEASMAFREQMDAVRSFIDDYCILDPG 424 Query: 707 LWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRII 766 + SL +Y E+ +Q + +S + ++ QKGF G + R Sbjct: 425 ASVQVGSLYDAYIEWAKQN---ALEPMSKKQFGTHVGQKGFTQG--------KSGKTRSW 473 Query: 767 KGLK 770 KGLK Sbjct: 474 KGLK 477 >gi|296447833|ref|ZP_06889745.1| phage/plasmid primase, P4 family [Methylosinus trichosporium OB3b] gi|296254633|gb|EFH01748.1| phage/plasmid primase, P4 family [Methylosinus trichosporium OB3b] Length = 892 Score = 338 bits (865), Expect = 3e-90, Method: Composition-based stats. Identities = 125/588 (21%), Positives = 217/588 (36%), Gaps = 62/588 (10%) Query: 225 SHDEWIPVVMAVHHETRGSSKGKEIARRWSK--QGSTYDEENFNYKWDTFDFEEIGDTAK 282 WI + A++ E GS++G+E+ W+ + E W F + G + Sbjct: 318 ERKPWIKIGAALYVEFGGSAEGEELFEDWTALREEGNVKPEKDAASWRNFRGDRPGGSTG 377 Query: 283 KRSTFTSLFYHHGKLIPK-GLLASRFSDAYNKAMFSIYKKGHF----------------- 324 K T L Y G G L +SD + +++ F Sbjct: 378 K--TIRDLAYKAGWSPDAAGFLDYEWSDGWTDKPDIVFEDERFKAALAVIPSCRALADEG 435 Query: 325 ----------------------LYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSM 362 LY T A +D+ S + + +L + Sbjct: 436 DEGDAVAPNAVAELGFSGAGGDLYNGSTFANLYRDRLLFIHESGDVLRFDCEG-GWLAAA 494 Query: 363 KEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLL 422 ++ K+ + + + + A+S E G S+ Sbjct: 495 PGTAERAAKAVAGILKDQATEAAHYQHLKKLCDARAQHAMIEMARS-EPGMTRSLAD--F 551 Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEV 482 D + LG +G+LDL +G+ + + ++ ++K F F+ + +E+ Sbjct: 552 DDNPMMLGVANGVLDLRSGRLLPMSPDVLVSKRCNVAFDPDAECPSFIRFLVEVQPDDEI 611 Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542 R VG L G Q F G G +GKS + L+ + G+ + + R Sbjct: 612 RACVKRFVGYCLTGDVSEQVFAFFHGGGNNGKSAFIELLAWLLGDYALKIPTEMLMQHQR 671 Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602 P+ +P ++ L G R++ +ET E + A++K +TGGD +T R + Sbjct: 672 NPQ--GPSPDIVALKGRRLIYANETEEGRRLADARVKDLTGGDTLTGRAPHAMAAICFRP 729 Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFL 660 S IV N + + WRR ++P+ K + RD QKL W L Sbjct: 730 SHKLVIVGNHKPAISDTSSGMWRRVALVPWTKTVPPEKRDRHLVQKLMR-EGSGVLNWAL 788 Query: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSE 720 G++ + GL IP+ A R+ D W+DD C+ G L+E+ SY E Sbjct: 789 DGLRDWREHGLM--IPDAIKDATASYREDEDILGDWLDDECESGRGLFEKKIHAYASYRE 846 Query: 721 YREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEK----EWKSKR 764 + E N + ++ +T T L ++GF G R + +W+S+R Sbjct: 847 WAESNGN---RPLANKTFTRRLTERGFPLGRDRRTFQGFALTDWRSRR 891 >gi|325110202|ref|YP_004271270.1| phage/plasmid primase, P4 family [Planctomyces brasiliensis DSM 5305] gi|324970470|gb|ADY61248.1| phage/plasmid primase, P4 family [Planctomyces brasiliensis DSM 5305] Length = 707 Score = 336 bits (862), Expect = 7e-90, Method: Composition-based stats. Identities = 109/641 (17%), Positives = 205/641 (31%), Gaps = 58/641 (9%) Query: 141 HPKTKKEYTWTTP---PHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTW 197 + T +++ P ++ ++ + S+ D E ++ L + Sbjct: 113 YHHTGEQWEKKQGNRKPEIYRADE--VASQPDAEVWLCEGEKDADTLSGLGLVATSLPST 170 Query: 198 TNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQG 257 E C + + A+ + R+ + Sbjct: 171 GTFKREYKPFFEGRKVFICEDHD--KAGRNHGEKCGKALQGVAKSVE-----VIRFPELP 223 Query: 258 STYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFS 317 D +F T + +++ L F+D N +F Sbjct: 224 EKGDVTDFIEAGGTVEQLRQRAQPWEQAQEPELPTFA----DSQGGPDHFTDCRNAEVFI 279 Query: 318 IYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNN 377 + Y K+W IW+ + + + ++ + V++ E + Sbjct: 280 QQHGENLRYCFPWKSW--------LIWNGQRWEPDRT--SQILRRAKSVYEFWMEQIADM 329 Query: 378 KNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILD 437 + + K A + +T+D L+ +G LD Sbjct: 330 HPDDAKDAIKHAQKSASTRGMEQFLKQAAA------MVPVTTDDLNRDPWLFNCPNGTLD 383 Query: 438 LETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESE-EVMDYFTRCVGMALLG 496 L TG+ + +T T + PS + + F +V+ + R G AL+G Sbjct: 384 LRTGELRPHNRADLLTVICPTAYNPDAPSFTWDGFLESTFADHGDVIPFLQRLFGAALVG 443 Query: 497 GNKAQRFIHIRGVGGSGKSTLMNLIKYAFG-NQYVINAEASDIMQNRPPEAGKANPSLIR 555 + G G +GKSTL+N I G + + ++ + Sbjct: 444 IVRDHILPVFWGSGANGKSTLLNAIMAILGGDYALQAVPEMLCDSDQ----DRHPTERAD 499 Query: 556 LMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLF 615 L G R V ET + + +K +TGGD + AR Y + + E S + N Sbjct: 500 LYGKRFVAAVETEAGRRLKESFVKALTGGDRIRARHLYQD-FFEFDPSHLIVLCSNHKPK 558 Query: 616 VRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDV 673 V D WRR ++PF + D +KL+ W ++G + ++GL Sbjct: 559 VIGDDYGIWRRLRLVPFTATFKGSDADPQLPEKLQ-AEAEGVLAWMVRGCLDWQAQGL-- 615 Query: 674 DIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRI 733 + PE L+A E + +D +ID CC + + ++ E+ + Sbjct: 616 NEPETVLQATSEYKNESDVIGGFIDACCYTNDRMQVSFSQFYTAFEEWCNESGE------ 669 Query: 734 STRTVTLNLKQKGFIGGIKREKIEKEWK-SKRIIKGLKLKP 773 NL + G E+ E+ R +GL LK Sbjct: 670 -------NLPSRTRTGRTLNERFEQVPNVRGRWYRGLGLKE 703 >gi|27383368|ref|NP_774897.1| hypothetical protein bll8257 [Bradyrhizobium japonicum USDA 110] gi|27356543|dbj|BAC53522.1| bll8257 [Bradyrhizobium japonicum USDA 110] Length = 475 Score = 336 bits (860), Expect = 1e-89, Method: Composition-based stats. Identities = 92/480 (19%), Positives = 166/480 (34%), Gaps = 40/480 (8%) Query: 293 HHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKIT 352 P + ++ +F+ + + T AW++ W + + Sbjct: 23 AANDNKPASNPGTSVTEDSVAYIFASTYRDTLRFCHSTGAWFE--------WDGSYWRRN 74 Query: 353 ASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAG 412 + V ++ + S A Sbjct: 75 EVGL-----AAHHVRVMARDMSQGLSPKALATIRKR-----------SFASGVEGFARND 118 Query: 413 SIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDL 472 F++T + D LG DG +DL TG+ ITK T T +L Sbjct: 119 PTFAVTIEAWDRDPFLLGTPDGTVDLRTGKMRAADPADGITKLTSTAPSAQADCPLWLRF 178 Query: 473 VSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVI 531 + E++ + + G L G + + + G GG+GKS +N Y + Sbjct: 179 LQDATGGDGEMIRFLQQWCGYCLTGDTREHALVFVHGDGGNGKSVFLNTTSYILHDYATT 238 Query: 532 NAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARL 591 + + + + + L L G+R+V SET E ++IKQMTGGD ++AR Sbjct: 239 ASMDTFVASR----SDRHPTDLAMLRGARLVSASETEEGRAWAESRIKQMTGGDAISARF 294 Query: 592 NYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKY 651 + F F+V N + + D A RR+ ++PF + D KL Sbjct: 295 M-RQDFFTFQPQFKLFVVGNHQPALHSVDAAARRRFNIVPFTRKPTKPDRELEAKL-RGE 352 Query: 652 TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEES 711 +W + G + + GL P ++A E DT+ W+ D C + + S Sbjct: 353 APAILRWMVDGCRDWQRNGL--VRPASIVEATETYFAEQDTFGQWLKDACRVEPDNRSIS 410 Query: 712 HSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771 +A + + + + S + +L + GF G + + ++ GL+L Sbjct: 411 DFVADLFKSWTDYAEASGERPGSQKGFVQSLTKSGFKKG-------QRVRGGQLYIGLQL 463 >gi|23015921|ref|ZP_00055685.1| COG3378: Predicted ATPase [Magnetospirillum magnetotacticum MS-1] Length = 796 Score = 334 bits (857), Expect = 3e-89, Method: Composition-based stats. Identities = 111/741 (14%), Positives = 225/741 (30%), Gaps = 87/741 (11%) Query: 65 LYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKP------KILIPF--RMNKEGIKKK 116 + D+D D D G + + + L + Sbjct: 115 VVLVDLDHGDIAAKR---DHLIRHIGPATMEVASGGVTPEGQRKLHLYWRLTEPAEGDDI 171 Query: 117 KTTESTQGHL--------DILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEE 168 T + + Q + E Sbjct: 172 TTVCRVRHIIATKVGGDPSFRSAHQPIRVAGTIHAKNGCRRLVEILSTGPI-------ER 224 Query: 169 DVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDE 228 D+ L + + + + + + + ++ + G D Sbjct: 225 DLGELVEAVLAMPPLDGE----GSSWLDFNDAGTARGSVTDLFSQQIREGGMDGTTRFDA 280 Query: 229 WIPV-VMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWD----TFDFEEIGDTAKK 283 V + G + Y+E + W + E + + ++ Sbjct: 281 LSRVMGYWIRRCREGHITPADAWDEIVA----YNEARIDPPWPVDRLQREAERLWERDQR 336 Query: 284 R-STFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVY 342 + + F++ A F+ + + A W + Sbjct: 337 HGAAHDGADPADADEDDEDAEPVAFTEDALAAAFTQAHAEDWRFVA---GWGQ-----WL 388 Query: 343 IWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKA 402 +W+ + ++++ + + + + + R + S Sbjct: 389 LWTGCRWERESTLLAY-----DMARLICRDAASA----------ARSAKLRSKLSSASTV 433 Query: 403 KSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVE 462 + + A + T+++ D L G++DL +GQ + L +TK T Sbjct: 434 AAVERLARADRSHAATTEVWDRDPWLLNTPGGVVDLHSGQIQPHNRALAMTKITMA--TP 491 Query: 463 GEPSQEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLI 521 + V+ +++ DY R G L G + G G +GKS N + Sbjct: 492 QGDCPIWRQFVATVTGGDKDLQDYLQRVAGYCLTGVTSEHALFFLYGTGANGKSVFANTL 551 Query: 522 KYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM 581 G+ + A + + + + L G+RIV ET + +K+K + Sbjct: 552 TAILGDYATVAAMDMFMA----TTSERHPTDMAGLRGARIVTSIETEQGRRWAESKLKAL 607 Query: 582 TGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NR 639 TGGD +TAR + E F + N +RN D+A RR ++PF I R Sbjct: 608 TGGDKITARFM-RQDFFEFIPQFKLLVAGNHKPAIRNVDEAMRRRLHMVPFTITIPPAKR 666 Query: 640 DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD 699 D + +L W ++G A+ GL P + A +E + D + W+D+ Sbjct: 667 DKQLSDRL-LAERDGILAWAVEGCLAWQRTGLRP--PAAVMAATDEYFESEDAFGRWLDE 723 Query: 700 CCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKE 759 C+ G + E + +L + + E + S + NL +G + Sbjct: 724 RCERGNSFSETTSALFGDWKNWTEANGEFT---GSIKRFAENLVNRGLE--------QWR 772 Query: 760 WKSKRIIKGLKLKPAFESVDD 780 K+ R +G++L ++ D Sbjct: 773 SKTARHFRGVRLCEGADASDG 793 >gi|220920024|ref|YP_002495326.1| phage/plasmid primase, P4 family [Methylobacterium nodulans ORS 2060] gi|219952854|gb|ACL63243.1| phage/plasmid primase, P4 family [Methylobacterium nodulans ORS 2060] Length = 482 Score = 334 bits (856), Expect = 4e-89, Method: Composition-based stats. Identities = 102/466 (21%), Positives = 170/466 (36%), Gaps = 41/466 (8%) Query: 308 SDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVF 367 ++ F+ Y DT +WY+ W+ + M F +E V Sbjct: 47 TEDSAACEFAEIHGERLRYCHDTGSWYE--------WTGVAWRQNRVGMAF-QWARELVR 97 Query: 368 DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSR 427 L S R+ + VE+ + T F++T++ D+ Sbjct: 98 QL------IANESPKARYLASKTSFAAGVEKFCRHDRT---------FAVTAETWDADRW 142 Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE-SEEVMDYF 486 LG G +DL TG+ + + ITK T +L ++ E + + Sbjct: 143 LLGTPGGTVDLRTGRLREADQGERITKLTAVAPARLPDCPLWLAFLTQATGGDEGLTRFL 202 Query: 487 TRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEA 546 + G AL G + + G GG+GKS +N++ A + Sbjct: 203 RQWCGYALTGTVSEHALVFVYGPGGNGKSVFLNVLTGILAEYAKTAAMDTFTASK----G 258 Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 + + L G+R+V SET E AKIKQ+TGGD +TAR + +F Sbjct: 259 DRHPTDMAMLRGARLVTASETEEGRPWAEAKIKQLTGGDPVTARFM-RQDFFTFTPTFKL 317 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 IV N +RN DDA RR+ ++PF + D KL +W ++G + Sbjct: 318 TIVGNHQPLLRNVDDAARRRFNIVPFTRKPERPDPHLEAKL-RAEWPAILRWMIEGCLDW 376 Query: 667 ISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQEL 726 GL P +A E D WI D C + + +A Y+ + E Sbjct: 377 QQNGL--VRPASVTEATEAYFAEQDLLGQWIADECVVRQGDPHCWDRIADLYASWCEYAR 434 Query: 727 NYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLK 772 + + + +++KGF +K + G+++K Sbjct: 435 AAGDEPGTVKAFGPAMRRKGF--------QDKRTNQAKGFAGIRVK 472 >gi|154247365|ref|YP_001418323.1| P4 family phage/plasmid primase [Xanthobacter autotrophicus Py2] gi|154161450|gb|ABS68666.1| phage/plasmid primase, P4 family [Xanthobacter autotrophicus Py2] Length = 462 Score = 333 bits (854), Expect = 6e-89, Method: Composition-based stats. Identities = 105/475 (22%), Positives = 176/475 (37%), Gaps = 47/475 (9%) Query: 307 FSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDV 366 ++ A F+ + DT AW++ W+ + + + F Sbjct: 25 LTEDNAAARFTELFADKLRFCHDTGAWFE--------WTGAAWQRNRTGLAF-----NWA 71 Query: 367 FDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSS 426 +L+ + ++ + R + S A + F++T D D Sbjct: 72 RNLARDLAESEPD-----------KVRYVTGKTSFATGVEKFARTDPAFAVTMDAWDRDP 120 Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE-SEEVMDY 485 LG G +DL TG ITK G + +L + E + + Sbjct: 121 FMLGTPGGTVDLRTGILRPADPADGITKLAGCTPAAEAMCRRWLQFLEEATGGDAEAIRF 180 Query: 486 FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545 + G +L G + I + G GG+GKS +N++ + A + + Sbjct: 181 MQQWCGYSLTGDTREHALIFVYGPGGNGKSVFLNVLTAIMADYATTAAMDTFTASHN--- 237 Query: 546 AGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFT 605 K L L G+R+V SET E ++IKQMTGGD +TAR + +F Sbjct: 238 -DKHPTDLAMLRGARLVTASETEEGRAWAESRIKQMTGGDTITARFM-RQDFFSFRPNFK 295 Query: 606 PFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKA 665 IV N +RN DDA RR+ ++PF + A D KL + +W ++G Sbjct: 296 LTIVGNHKPALRNVDDAARRRFNIVPFTRKPATPDPELEAKL-KEEWPGILRWMIEGCLD 354 Query: 666 YISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIG---ENLWEESHSLAKSYSEYR 722 + GL P +A + D WI++ C + ++W+ L +S++EY Sbjct: 355 WQKNGL--VRPASVTEATQTYFSDQDLLGQWIEEMCRVERERPDMWDRRADLFESWTEYA 412 Query: 723 EQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFES 777 S ++ + +KGF S R KG++L P S Sbjct: 413 R---GAGEDAGSAKSFYEAMLRKGFEP--------IRKHSGRGFKGIQLLPKAHS 456 >gi|320013130|gb|ADW07978.1| phage/plasmid primase, P4 family [Streptomyces flavogriseus ATCC 33331] Length = 509 Score = 332 bits (851), Expect = 1e-88, Method: Composition-based stats. Identities = 88/489 (17%), Positives = 178/489 (36%), Gaps = 35/489 (7%) Query: 295 GKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITAS 354 G+ GLL +D N +F + + Y W T +I Sbjct: 44 GEATQHGLLPDTLTDRGNAKLFVKLYANDYRHVP---------GMGWYRWDTTRWQIDED 94 Query: 355 IMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYR-RQNVEENSKAKSTAQSLEAGS 413 V+ + E + + + R+ + + ++ Sbjct: 95 DT--------VVWAAGDLAESIASSDPRGLYTTQALQQHRRRALSTTGMNAMLTQAKSAP 146 Query: 414 IFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLV 473 + + LD+ + L DGI+DL TG P + + P+ + + Sbjct: 147 GMVLNAARLDADAYALCTPDGIVDLRTGLLKTPDPNKDFHSRSTSVGPRPSPTPRWNRFL 206 Query: 474 SGYFESE----EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529 + F + E++++ +G ++ G Q + G G +GKS L++++ G+ Sbjct: 207 TDTFGDDAEGTEMIEFLQLLLGYSVTGDVGGQVLPFLFGSGKNGKSVLLDVLMKLLGDYA 266 Query: 530 VINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTA 589 + + L L G R+++ SE D+ + A++K +TGGD + A Sbjct: 267 DAAPPGFLMAR----PYEGHPTDLAELHGRRVIVCSEVKHGDKFDEARVKLLTGGDRIKA 322 Query: 590 RLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDASFAQKL 647 R + + +++ N V A+WRR +IPF + +++ + + A L Sbjct: 323 RRM-RQDFFSFQPTHKLWLLGNHRPEVGTGGFAFWRRMRLIPFTRVVSDDRKIDNLADIL 381 Query: 648 ETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENL 707 T+ W + G + Y++ D+ PE A + D + ++CC +G L Sbjct: 382 VTEEGPGILGWLIDGARRYLAGDKDLTGPERVRIATTAYAETEDHTGRFFEECCTLGPEL 441 Query: 708 WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIK 767 E L +Y + ++E +++R ++ G+ K ++ Sbjct: 442 RAEQTGLYTAYRTWCQEEGA---PAMTSRAFAARAREL---AGLASPKEMILSNQRKYYP 495 Query: 768 GLKLKPAFE 776 G+ L P E Sbjct: 496 GIGLLPEQE 504 >gi|118579792|ref|YP_901042.1| P4 family phage/plasmid primase [Pelobacter propionicus DSM 2379] gi|118502502|gb|ABK98984.1| phage/plasmid primase, P4 family [Pelobacter propionicus DSM 2379] Length = 524 Score = 332 bits (850), Expect = 2e-88, Method: Composition-based stats. Identities = 98/478 (20%), Positives = 184/478 (38%), Gaps = 38/478 (7%) Query: 297 LIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIM 356 +P +F+D F+ + Y W + + A Sbjct: 63 ALPVSNAGDQFTDLRLSERFAAMFRDQLRY------WSE--SGKWLAFDGRRWTTDAPGG 114 Query: 357 NFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFS 416 F ++E + +L + N+ +E + + + ++ + S Sbjct: 115 GF-PFIRELLKNLYRKALYNSDFLVRTEELKALLK----LEAHPRQATLLEACKQRPELS 169 Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY 476 + S LD L +G +DLE+G + ++T+ + +FL + Sbjct: 170 VASAELDRHPMLLTVLNGTIDLESGALLPHDPANFLTRLVFIEYDPTAECPKFLAFLDRI 229 Query: 477 F-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535 F +E++ Y R G L G Q + G+G +GKS L N+ + G+ Sbjct: 230 FASDKEIISYIQRFAGYCLTGLTGEQVLLFFYGLGANGKSVLANVFRALCGDYASTAGAE 289 Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595 ++++R L L GSR+V++SE ++ + + A+IKQ+TG D ++ R YG Sbjct: 290 LLMVRDRR----SPTNDLAGLRGSRLVVVSEFDDGERLAEAQIKQLTGEDAISCRFLYGE 345 Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTL 653 + F P ++ N +R D WRR+ ++ F+ I RD +KL + Sbjct: 346 -FFSYVPQFKPLLIGNHRPKIRGTDHGIWRRFHLVSFNVVIPPEERDPHLQKKL-LQELP 403 Query: 654 EAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHS 713 W ++G + +GL+ PE A E RQ D + WI + C + + + Sbjct: 404 GILAWAVRGCLDWQRQGLNP--PESVKAAVTEYRQAEDVFGQWIAEYCHRDVGMTAPAAA 461 Query: 714 LAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771 L +S++E+ + ++T L GF +++ +GL L Sbjct: 462 LLRSFAEF------SGWRNVTTTKFGRMLTDAGFS--------KEKSHGTIRWRGLGL 505 >gi|325526291|gb|EGD03902.1| P4 family phage/plasmid primase [Burkholderia sp. TJI49] Length = 548 Score = 331 bits (849), Expect = 2e-88, Method: Composition-based stats. Identities = 99/540 (18%), Positives = 189/540 (35%), Gaps = 32/540 (5%) Query: 251 RRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDA 310 +S + + + ++ + + +D Sbjct: 3 YAFSLLNGGLNPDRLEEELFEYNADCCKPPLPESEVARVAINVIKSHQENVGHIMHTTDL 62 Query: 311 YNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLS 370 N S + Y +TK W +K + + ++ L ++ + + Sbjct: 63 GNAERMSELYRETLRYVCETKQWLEKQ-------DSGVWQRVDE-LHVLSLARKLIALIY 114 Query: 371 EEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLG 430 EE + ++ + Q E N+ K+ + ++++ LD L Sbjct: 115 EEMFLLSPGNR-----QSMAMHAQYTESNTGLKNAVDLFRSEPGIALSAKDLDCGDWLLP 169 Query: 431 EQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRC 489 ++G++DL++G +L+IT + + + + +++Y R Sbjct: 170 VRNGLIDLQSGTFTPMRPDLHITYTAAVDYDPNATCPIWEGFLLQIMNGDVALVEYLRRA 229 Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR--PPEAG 547 +G L G G +GKST +N+++ FG+ + +N Sbjct: 230 IGYTLTTMTSEHALFFAYGSGANGKSTFLNVLRALFGDLGAQANGDMLLEKNGAGGMSQN 289 Query: 548 KANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPF 607 A+ + RLMG R+V +SE + + +K TGG+ +TAR+ Y N + E F + Sbjct: 290 AASSEVARLMGKRLVAMSEVEDGRHFSEKTVKWYTGGEVITARMLYQNAF-EFKPRFKLW 348 Query: 608 IVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKA 665 + N V+ D WRR +IPF I RD +KL + W L G + Sbjct: 349 LAGNYKPTVKGSDHGIWRRMKLIPFTVTIPPEERDPDLERKLC-EELPGILNWALAGCRQ 407 Query: 666 YISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQE 725 + G ++ P V E R D +W+ + K + + E + Sbjct: 408 WRENGYKLNEPNVIASEVAEYRSEMDVVHSWLSEFTRDDPEGEIHFGDTYKFFKSWSESQ 467 Query: 726 LNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDNSNII 785 N+ S + LK KG+ K R+ KGL+L E ++ + Sbjct: 468 YNFSY---SGNKLGRILKDKGYAAASKPH---------RVYKGLRLIVDLEFNENTGAYV 515 >gi|241894876|ref|ZP_04782172.1| primase [Weissella paramesenteroides ATCC 33313] gi|241871884|gb|EER75635.1| primase [Weissella paramesenteroides ATCC 33313] Length = 796 Score = 331 bits (849), Expect = 2e-88, Method: Composition-based stats. Identities = 141/784 (17%), Positives = 276/784 (35%), Gaps = 54/784 (6%) Query: 18 FKLIPLRLGDKR---PQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKD 74 + IP+ R W + ++ A G F + P + D+D Sbjct: 30 YTKIPVSAMTGRHASSTDERTWTTFDEALANMEIFDADGLAFFL---KPPFFGIDMDHYQ 86 Query: 75 EKTANTFKDTFEILHGTPIVRIG------QKPKILIPFRMNKEGIKKKKTTESTQGHLDI 128 ++ + G I +G Q + + K + + +++ Sbjct: 87 DEIDLYEQGYNTTQLGMAIEAMGSYTELSQSHEGIHIIAKGTLPGDKSRQNQDGDKVVEM 146 Query: 129 LGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEED---VEYLFKFFQEITVPLV 185 G++F + K+ L+ E+ +E + ++T V Sbjct: 147 YSTGRFFALTGMSIMGHKDTINAPGQEMIDHVYNTLIRPEERPRLEDVVIEHNDLTKEEV 206 Query: 186 KDKKSIIPSKTWTNNNNRQYTNRE----ITAFLSCFGEEFYNGSHDEWIPVVMAVHHETR 241 +K E A L+ + D ++ + R Sbjct: 207 IEKALASNGGANFKKLYDGNWQDEYGSASEADLAFVNLLAFWTGRDRYL-----MDEIFR 261 Query: 242 GSSKGKEIARRWSKQGSTYDEENFNYKW----DTFDFEEIGDTAKKRSTFTSLFYHHGKL 297 S ++ STY E N +T+ + + + Y H Sbjct: 262 DSGLMRDKWDE-KHGKSTYGEGTINRAITDVTETYRPKTEAFSVVIGNGDEEKVYPHHDY 320 Query: 298 IPKGLLASRFSDAYNKAMFSIYKKGHFLY-TADTKAWYKKDKNNVYIWSLTLDKITASIM 356 +G+ + +K + +K + D W + + V+ + L I Sbjct: 321 TDQGMAERFYERWGDKVLHVDSEKSETTFMVFDGTVWKRDVERVVHKLFIKLSDIILETE 380 Query: 357 NFLVSMKEDVFDLSEEPE---DNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGS 413 ++ + V + ++ + SK + N ++ K ++A+ L A S Sbjct: 381 EPIMPPEPTVENYPDQKDLELAEKNYSKDKKSAINAFHKFAKSVRTDKGLNSAKKLLA-S 439 Query: 414 IFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLV 473 + ++ ++ D + DG+ DL TG++ + Y TKST + +EF + Sbjct: 440 MVNVDINIFDKEVGVINTPDGVYDLATGERSDNDPKRYFTKSTLIAPDKNLEPKEFKTFL 499 Query: 474 SGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532 + +++DY + VG ++ G + Q ++ + G G +GK LM+ IK A G+ Sbjct: 500 NQVMLGDADMVDYLMKFVGYSMFGNGEEQEYVLLYGNGRNGKGVLMSAIKNALGDYVTAV 559 Query: 533 AEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLN 592 + + + + N L RL G+R+V +SE +N +++AA IK++TGG A Sbjct: 560 NPDTFMDDGKKSTSN--NDELARLRGARLVSVSEIAQNKKLDAAIIKKLTGGGTFVANEK 617 Query: 593 YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETK 650 Y Y E ++ PF N + + + WRR VIPF+ I D + KLET Sbjct: 618 YNRPY-EFQSAGVPFFDTNYLPQINDTSEGIWRRTNVIPFNLTIKEEDVDVNLGHKLET- 675 Query: 651 YTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEE 710 + +K + ++GL +P +A E+ +D +I + E + E Sbjct: 676 EAGAILWYLIKAATKWRNEGLGP-VPYAVKQANEKYHSSSDPIGEFIKETFIENEAGFVE 734 Query: 711 SHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLK 770 + ++ ++ +E D +K + + K R KG+ Sbjct: 735 GPDVTNAWGQFVGEE--PDDYP----------TRKMLGSELAKRFKTKRTARGRGYKGIM 782 Query: 771 LKPA 774 LK Sbjct: 783 LKEG 786 >gi|48697236|ref|YP_024966.1| putative primase/helicase protein [Burkholderia phage BcepC6B] gi|47779042|gb|AAT38405.1| putative primase/helicase protein [Burkholderia phage BcepC6B] Length = 888 Score = 331 bits (848), Expect = 3e-88, Method: Composition-based stats. Identities = 157/844 (18%), Positives = 277/844 (32%), Gaps = 135/844 (15%) Query: 38 EQLLSSEKIDK----LPACGFG-FVCGVGEQPLYAFDIDSKDEKT--------ANTFKDT 84 + L++E++ PA G G + D+DS +T A Sbjct: 68 NRPLTAERLAHHVNGGPAYGAAQIEPGASTTRIACLDLDSHKGETPWPDMQDVAVRIMAR 127 Query: 85 FEILHGTPIVRIGQKPKILIPFRMNKEGIK-----------------KKKTTESTQGHLD 127 E PI L + + E + T G ++ Sbjct: 128 LEAAGLRPIPFRSSGGAGLHIYVLWDEPQDAYSVRCALRAALAACELRDGTKGIAAGQVE 187 Query: 128 IL---------GCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQ 178 + G G FV P K P F+++D P ++++ Sbjct: 188 VFPKQNSVPSDGFGNMFVL----PLAGKS----VPLDSFELDDMPKTFAAEMDW----PS 235 Query: 179 EITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHH 238 VPLV ++ ++P + + G + ++ W VV +HH Sbjct: 236 SAAVPLVAREEIVMPGTADV--PVELELIKSALDMIPNAGVD--ELDYEAWRDVVFGIHH 291 Query: 239 ETRGSSKGKEIARRWSKQGSTYDEENF-NYKWDTFDFEEI--GDTAKKRSTFTSLFYHHG 295 RGS G +A +S + S Y+ W R+ H Sbjct: 292 AARGSDDGLALAHEFSARSSKYNPRFLDERVWPHIGKTGTDERAPITGRTILHLARAHGW 351 Query: 296 KLIPKGLL------------ASRFSDAYNKAM--FSIYKKGHFLYTADT----------- 330 + + A R ++ + + ++ Sbjct: 352 QEPIEDDFEVAARVEAIAVGAPRAAEPAVEVRGGDAPLDDDEVIFVQSDPPAKPPRASKK 411 Query: 331 ----------------------KAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKE---- 364 + + +Y+ L + + E Sbjct: 412 KRDGDDEPPKGYRARTEFGNAERMLDRFGAGLMYVPELEAWYVWTGVYWRRAVQVELENM 471 Query: 365 ---DVFDLSEEPEDNNKNSKSPRFWF-NTDYRRQNVEENSKAKSTAQSLEAGSIFSITSD 420 + L +E E+ + F+ ++ + N A S + + +T Sbjct: 472 AKDTIRALVDEAEELQTAEERIEFFKFCAACQKAAMVSN--MIRLAAS-DPRVVVPVTE- 527 Query: 421 LLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ES 479 LD + LG +G +DL TG + P KE IT T + + F V F + Sbjct: 528 -LDKHTHLLGVGNGAVDLRTGALLPPGKEHRITVVTPVEYDPRAAGKLFEQTVRDVFSDD 586 Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI- 538 E +++F R VG ALLG + I G G +GKST++ I+ A G + + + Sbjct: 587 AEQVEFFQRLVGYALLGTPREDLLIIPHGTGSNGKSTVLGKIREALGAHAKSASAETFLS 646 Query: 539 -MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597 AG A L+RL G+R V + E +E E+ IK MTGGD + AR + T Sbjct: 647 ASGGPGAAAGAAREDLLRLRGARFVYVGEPDEGSELREGLIKAMTGGDPIPARGLWSKTT 706 Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLET-----KYT 652 E ++ F+ N V+ D A WRR +++PF++ ++D + + Sbjct: 707 IEVVPTWVAFMPTNHKPIVKGDDHAIWRRLMLVPFERNF-DKDPTIKKDPARAERLAAEL 765 Query: 653 LEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESH 712 W ++G AY GL A++ + D WID+ C +G + + Sbjct: 766 PGVLAWCVRGALAYQQHGLRPT--SSVAAARDAYKADMDLLADWIDERCRVGRDAASTNE 823 Query: 713 SLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLK 772 L +S+ + EQ R ++R + + +GF + R G+ + Sbjct: 824 DLWRSWRAFAEQRGEL-RFIANSRALARRIAARGFS-----QIKNTYGIRGRGFAGICVN 877 Query: 773 PAFE 776 + Sbjct: 878 DEVD 881 >gi|163854284|ref|YP_001642327.1| P4 family phage/plasmid primase [Methylobacterium extorquens PA1] gi|163665889|gb|ABY33256.1| phage/plasmid primase, P4 family [Methylobacterium extorquens PA1] Length = 697 Score = 330 bits (846), Expect = 5e-88, Method: Composition-based stats. Identities = 134/763 (17%), Positives = 247/763 (32%), Gaps = 82/763 (10%) Query: 24 RLGDKRPQRLGKWEEQLLSSEKID---KLPAC-GFGFVCGVGEQPLYAFDIDSKDEKTAN 79 + K P +L W L E I+ P G G + D+D + Sbjct: 2 KPRTKEP-KLKNWTGITLEIEDIEAHGTFPEHFNIGIKLGSKSNGIVDVDLDC------D 54 Query: 80 TFKDTFEILHGTPIVRIGQKP--KILIPFRMNKEGIKKK-KTTESTQGHLDILGCGQYFV 136 L T G+ +R++ + K S + +++ G V Sbjct: 55 AAVSLGARLLNTETRVFGRDDNRASHYLYRVHDPRSTLRFKHPVSGEVLVELRGNNSQTV 114 Query: 137 AYNIHPKTKK--EYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPS 194 + + + P F+ + L + L ++ + + + Sbjct: 115 LPGSIYEDGSIIRFEDYSLPEPFETDWATLERQCG---LISAGTVLSEFWKEGSRHALAL 171 Query: 195 KTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWS 254 +++ T + E + + + V +S K + Sbjct: 172 ALGGWAAHKRIDQGAFTRLIEAVAEYMNDDDVADRVECVR--DSYIDLASGNKVAWKGDL 229 Query: 255 KQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKA 314 Q Y KW + + A ++S L + SD + Sbjct: 230 DQLIDYRIMLAISKWLMVSAKLELNPATQQS---------------KKLPTVTSDLQSGQ 274 Query: 315 MFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPE 374 F + + ++ D + +Y++ + S L S+K V D + + Sbjct: 275 DFCDHIGDNLIFCDDEERFYQRLNDVYEPAS-------------LASVKGTVMDYVKSFD 321 Query: 375 DNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDG 434 + N + + + + + S I+S ++ +G ++G Sbjct: 322 ADVTNYEEAKKLKSAQSMSRINAIVDVS---------RSSLRISSSQFNTDPFLVGCRNG 372 Query: 435 ILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE-SEEVMDYFTRCVGMA 493 +LDL G+ VK +T+ GT + F++ + F+ E +D+ R VG Sbjct: 373 VLDLRAGKLVK--PSCIVTRRLGTNYDSQARCPSFVEFLQQVFDADREKIDFIRRAVGYT 430 Query: 494 LLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL 553 L G Q G G +GKST + +I+ G+ S + + Sbjct: 431 LTGSTAGQCIFVAIGSGANGKSTFLKIIQELMGDYGTSIPSNSLMASKFG---NDKTDDI 487 Query: 554 IRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKH 613 L G R V SE ++ AK+K MTGGD ++ R YG Y F + N Sbjct: 488 ASLNGRRFVSASEGEIGQKLAVAKVKLMTGGDIISCRPLYGQ-YFNMKPEFKIWFGTNDL 546 Query: 614 LFVRNPDDAWWRRYIVIPFDKPIAN--RDASFAQKLETKYTLEAKKWFLKGVKAY--ISK 669 ++ D+A WRR +I F RD +L+ W L+GV+ + Sbjct: 547 PVIQGGDEAIWRRIHLIDFPVSFKEGQRDGGLFDRLKL-ELPGILSWALQGVQELGEMRN 605 Query: 670 GLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYD 729 G ++ P R +DT +++D CD E + L ++Y + Sbjct: 606 GF-LNPPASVRNETTRYRSDSDTVASFVDVACDKVEGAIVMMNVLHEAYVRWCNVSG--- 661 Query: 730 RKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLK 772 + + + L + F K K G+KLK Sbjct: 662 LEALPSGLFGKELSRLDFPI--------KRRKEGNGRLGIKLK 696 >gi|21234191|ref|NP_639791.1| putative DNA primase/helicase [Streptomyces coelicolor A3(2)] gi|13620678|emb|CAC36717.1| putative DNA primase/helicase [Streptomyces coelicolor A3(2)] Length = 506 Score = 330 bits (845), Expect = 6e-88, Method: Composition-based stats. Identities = 95/486 (19%), Positives = 177/486 (36%), Gaps = 35/486 (7%) Query: 295 GKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITAS 354 G+ GLL +D N +F F + + Y W T +I Sbjct: 41 GEASANGLLPDTLTDRGNAKLFVKLYANDFRHVPNIG---------WYRWDTTRWQIDED 91 Query: 355 IMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYR-RQNVEENSKAKSTAQSLEAGS 413 ++ + E + F ++ R S + + Sbjct: 92 DT--------VLWAAGDLAETIATHDPRGLFTTTALHKHRTRAMSTSGMNAMLTQARSAP 143 Query: 414 IFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLV 473 + +D LD+ L G++DL TG P + T + P +L + Sbjct: 144 GMVLKADRLDADPYALCTPRGVVDLRTGLLRAPDPNKDFHSRSTTVGPQQMPVPRWLRFL 203 Query: 474 SGYFE-SEE---VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529 + F E ++DY +G ++ G AQ + G G +GKS L++++ G+ Sbjct: 204 TDTFGADAEGQQMIDYLHLLLGYSITGDVGAQILPFLWGTGKNGKSVLLDVMMKLLGDYA 263 Query: 530 VINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTA 589 + + L L G R+ + SE D+ + A++K +TGGD + A Sbjct: 264 DAAPPGFLMAKPFE----GHPTDLAELHGRRVYVCSEIKPGDKFDEARVKLLTGGDRIKA 319 Query: 590 RLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDASFAQKL 647 R + +S + +++ N V A+WRR +IPF++ + + + + A L Sbjct: 320 RRMRQDPFS-FEPTHKLWLLGNHKPEVGTGGFAFWRRMRLIPFERVVPDDRKIDNLADLL 378 Query: 648 ETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENL 707 + W + G + Y+ D+ PE A + D + ++CC +G L Sbjct: 379 VMEEGPGILAWLIDGARRYLGGDRDLTGPERVRIATTAYAETEDHTGRFYEECCRLGPEL 438 Query: 708 WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIK 767 E +L +Y+ + E + IS+R ++ G+ K K ++ Sbjct: 439 RAEQTALYAAYTAWCHNEGA---QIISSRAFASRTREL---VGLASPKEMKVSNQRKYYP 492 Query: 768 GLKLKP 773 G+ L Sbjct: 493 GIGLLT 498 >gi|83648331|ref|YP_436766.1| hypothetical protein HCH_05685 [Hahella chejuensis KCTC 2396] gi|83636374|gb|ABC32341.1| predicted ATPase [Hahella chejuensis KCTC 2396] Length = 758 Score = 328 bits (841), Expect = 2e-87, Method: Composition-based stats. Identities = 100/548 (18%), Positives = 176/548 (32%), Gaps = 60/548 (10%) Query: 230 IPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTS 289 + S E +D F E D + + Sbjct: 260 LRAGGLSVAILTPSEDKPEGWDSADALEEGFDAVGFISAGPRMPIEPSCDEEDSETLLSD 319 Query: 290 LFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLD 349 + + ++ F+ + Y + W +WS Sbjct: 320 VDWA--------------TEDGLAMAFTRRYGEDWRYCS---LW-----GKWLVWSGMRW 357 Query: 350 KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSL 409 ++ ++ V + + K + + + + Sbjct: 358 NSD-----QMLFVQHLVRGVCRAASQKADSDKRKG----------RLASAATIAAVEKIA 402 Query: 410 EAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF 469 + + T + D+ L G+++L TGQ +E +TKST + Sbjct: 403 RSDPAHASTPEEWDADIWALNTPGGVVELRTGQIRAHRREDRMTKSTSA--TPKGDCPTW 460 Query: 470 LDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 ++ E+ +Y R VG L G A + G G +GKS +N++ G+ Sbjct: 461 RTFLADVTGQDAELQEYLQRVVGYCLSGATSAHALFFLYGTGANGKSVFVNVVGAILGDY 520 Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588 + + + L L G+R V ET + N +K+K +TGGD ++ Sbjct: 521 AANAPMDTFME----ARGDRHPTDLAGLRGARFVSAIETEQGRRWNESKVKAITGGDKIS 576 Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQK 646 AR + E F I N +RN D+A RR +IPF + RD K Sbjct: 577 ARFM-RQDFFEYAPQFKLLIAGNHKPAIRNVDEAMKRRLHLIPFTVTVPPEKRDGGLTDK 635 Query: 647 LETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGEN 706 L W ++G ++ GL P+ A EE + D WI++ C+ Sbjct: 636 L-LAERGGILAWAVEGCLEWLRDGLKP--PDCVRAATEEYFEAEDALGQWIEERCERIGQ 692 Query: 707 LWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRII 766 S L + E+ E+ Y S + + L + F+ + R Sbjct: 693 AKTASSELYADWREWAERAGEY---VGSIKRFSETLITRDFM-------QSRLHGGTRGF 742 Query: 767 KGLKLKPA 774 KGL+L+P Sbjct: 743 KGLRLRPK 750 >gi|30795066|ref|NP_851516.1| putative DNA primase/helicase [Streptomyces rochei] gi|30698439|dbj|BAC76552.1| putative DNA primase/helicase [Streptomyces rochei] Length = 485 Score = 327 bits (839), Expect = 3e-87, Method: Composition-based stats. Identities = 100/486 (20%), Positives = 181/486 (37%), Gaps = 39/486 (8%) Query: 299 PKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNF 358 P GLL +D N +F+ F + + Y W K T Sbjct: 16 PTGLLPDELTDRGNAKLFARLYSDRFRHV---------EGLGWYSWDQYRWKRTGGEKGA 66 Query: 359 LVSMKEDVFDLSE-EPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSI 417 + + + + +P N + R+ + + K+ Q +A S+ Sbjct: 67 MWAAGDMAEQMPRTDPHGTFSNRELAAH-------RRRTQSTAGVKALLQQAQAAPGLSL 119 Query: 418 TSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF 477 D +D L G++DL TG+ KP + T E P + + F Sbjct: 120 DPDSMDGDIYALCTPGGVVDLRTGELRKPDPLADMHSRATTVGPEDMPLPRWHSFLRDTF 179 Query: 478 ESE----EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533 + E + + +G ++ G AQ + G G +GKS L+ ++ G+ Sbjct: 180 GDDAKGRETIAFLHLLLGYSVTGDVGAQILPFLYGSGANGKSVLLEVMMQILGDYANAAP 239 Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593 + + + E + L L G RIV+ SE ND+ N A++K +TGGD +TAR Sbjct: 240 PGFLMEKGKFTE---HSTELTELHGRRIVVCSELKPNDKFNEARVKLLTGGDTITARRM- 295 Query: 594 GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDASFAQKLETKY 651 + + +++ N V A+WRR +IPF++ + + + + AQ+L Sbjct: 296 RQDFFTFRPTHKLWLLGNHRPEVGTGGYAFWRRMRIIPFERKVPDELKIDNLAQELVRDE 355 Query: 652 TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIG------E 705 W ++G + Y++ + P A E + D +I + C G Sbjct: 356 GPGILHWLIQGAQHYLATRDPLHGPASVRLATEAYEKTEDHIGRFIAERCTKGEGGQPNP 415 Query: 706 NLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRI 765 L E L SY + +E + ++R ++Q G+ + +++ Sbjct: 416 ELRVEQKLLYASYGRWCSEEG---IRPATSRAFASRIRQ---ELGLASPAEMIKNNDRKL 469 Query: 766 IKGLKL 771 GL L Sbjct: 470 YPGLAL 475 >gi|297564960|ref|YP_003683932.1| phage/plasmid primase, P4 family [Meiothermus silvanus DSM 9946] gi|296849409|gb|ADH62424.1| phage/plasmid primase, P4 family [Meiothermus silvanus DSM 9946] Length = 882 Score = 326 bits (834), Expect = 1e-86, Method: Composition-based stats. Identities = 83/450 (18%), Positives = 174/450 (38%), Gaps = 29/450 (6%) Query: 335 KKDKNNVYIWSLTLDKITASI-MNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR 393 + +W+ T + + ++ + + + + V + + ++ + F + Sbjct: 459 HVEGQGWLVWAGTHWERSDAVALEIMQRLPQLVLQEALQA-GEAGETEKSQKLFKWAQKS 517 Query: 394 QNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYIT 453 + + A + LD+ + L ++G+L+LE+ K + T Sbjct: 518 DRLSTVRNSVVM-----ASWALRVREWELDARTDELPLENGVLNLESLTLGPHRKLAWHT 572 Query: 454 KSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSG 513 P+ + + E + Y + VG +LLG N+ G G +G Sbjct: 573 HVLPHPYDPYAECPRWERFLEEVLPDENLRRYVQKAVGYSLLGDNREHVIFLCYGSGANG 632 Query: 514 KSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI 573 KS + ++ + FG + +N + + + + G R+V++ E + Sbjct: 633 KSVFLEVLSWLFGPYAHRADPELLLQRN----SDRHPTEIAAMRGKRLVVMQEVDPEGIW 688 Query: 574 NAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFD 633 +A +K M+G + +TAR N ++ +I N R+ +A+WRR +IPF+ Sbjct: 689 RSALLKSMSGDNTLTARKIRENP-ITFTVTWKVWIAANHLPRSRDHSEAFWRRIKLIPFN 747 Query: 634 KPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTD 691 I RD + KL + ++ W ++G++ Y +GL PE +A R+ D Sbjct: 748 VTIPPERRDRTLPWKL-REESVGLLAWAVQGLRMYYQEGLQ--EPEAIAQANRAYRERED 804 Query: 692 TYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGI 751 ++ + C +G S +L +Y E+ +E + +S + L+Q+G Sbjct: 805 QVGRFLKERCQLG-GGRTASSALYAAYQEWALEEGE---RMLSQKAFVAELEQRGLE--- 857 Query: 752 KREKIEKEWKSKRIIKGLKLKPAFESVDDN 781 K G++L +S + Sbjct: 858 -----RKRLAEGIFFLGMELPTERKSSTSD 882 >gi|17547948|ref|NP_521350.1| hypothetical protein RSc3229 [Ralstonia solanacearum GMI1000] gi|17430254|emb|CAD17017.1| putative bacteriophage-related protein [Ralstonia solanacearum GMI1000] Length = 759 Score = 325 bits (833), Expect = 2e-86, Method: Composition-based stats. Identities = 90/469 (19%), Positives = 164/469 (34%), Gaps = 45/469 (9%) Query: 308 SDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVF 367 ++ F+ + Y A AW +W + + ++ + + Sbjct: 321 TEDALALAFTRRYHRDWRYVA---AW-----GRWLVWDGHRWRTEDT-----LAATDLIR 367 Query: 368 DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSR 427 ++ + +N + + + + A + T+ D+ Sbjct: 368 NVCRHAALHAENPRLA----------AKLATSGTIAGVERLARADRRHAATTSEWDADPW 417 Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE-SEEVMDYF 486 L G++DL TG++ ++ +TK T + ++ E+ Y Sbjct: 418 LLNTPGGVVDLRTGRQRPHDRDDRMTKITTA--TPVGDCPTWRQFLAEVTGGDVELQAYL 475 Query: 487 TRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEA 546 R G AL G + + G G +GKS +N + G+ A + + A Sbjct: 476 QRMAGYALTGSTQEHALFFLYGTGANGKSVFVNTLATILGDYAANAAMDTFMETR----A 531 Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 + + L G+R V ET + +K+K +TGGD ++AR + E F Sbjct: 532 DRHPTDMAGLRGARFVAAIETEQGRRWAESKVKNLTGGDKISARFM-RQDFFEFFPQFKL 590 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVK 664 F+ N +RN D+A RR +IPF + RD QKL W ++G Sbjct: 591 FVAGNHKPAIRNIDEAMKRRLHLIPFTVTVPPERRDKHLQQKL-LAERDGILAWAVQGCL 649 Query: 665 AYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQ 724 + G +D P+ L A EE + D W+D+ C N + L + ++ E Sbjct: 650 DWQRLG-RLDPPQQVLDATEEYFEAEDALGRWLDERCVREANAKSLTAELFNDWKQWAEA 708 Query: 725 ELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773 + S + L +G + R +G+ LK Sbjct: 709 AGEFA---GSQKRFADLLLTRGVEK-------WRNTAGLRGFRGVGLKH 747 >gi|258543726|ref|YP_003189159.1| hypothetical protein APA01_26880 [Acetobacter pasteurianus IFO 3283-01] gi|256634804|dbj|BAI00780.1| phage/plasmid primase P4 [Acetobacter pasteurianus IFO 3283-01] gi|256637860|dbj|BAI03829.1| phage/plasmid primase P4 [Acetobacter pasteurianus IFO 3283-03] gi|256640914|dbj|BAI06876.1| phage/plasmid primase P4 [Acetobacter pasteurianus IFO 3283-07] gi|256643969|dbj|BAI09924.1| phage/plasmid primase P4 [Acetobacter pasteurianus IFO 3283-22] gi|256647024|dbj|BAI12972.1| phage/plasmid primase P4 [Acetobacter pasteurianus IFO 3283-26] gi|256650077|dbj|BAI16018.1| phage/plasmid primase P4 [Acetobacter pasteurianus IFO 3283-32] gi|256653067|dbj|BAI19001.1| phage/plasmid primase P4 [Acetobacter pasteurianus IFO 3283-01-42C] gi|256656121|dbj|BAI22048.1| phage/plasmid primase P4 [Acetobacter pasteurianus IFO 3283-12] Length = 466 Score = 325 bits (832), Expect = 2e-86, Method: Composition-based stats. Identities = 92/479 (19%), Positives = 166/479 (34%), Gaps = 44/479 (9%) Query: 307 FSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDV 366 A YK Y W+ W+ T + F Sbjct: 31 TEHGMAAAFTERYKDE-LRYDHKAGCWFL--------WTGTHWQEDCKHRAFSY-----A 76 Query: 367 FDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSS 426 L E + + + S + ++ + D Sbjct: 77 RMLVAEANQLCEQKEQA-----------ITGKASFCGGVERFARTDPAHAVVPEDWDKDP 125 Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDY 485 L G +DL TG IT+ + P ++ ++ E++ + Sbjct: 126 YLLATPGGTVDLRTGALRPACPADMITRVAAVAPSD-MPYPQWERFLNEATNGDTELIVF 184 Query: 486 FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545 R G L G + + G GG+GKS +N + G+ + A + + Sbjct: 185 LKRWCGYCLTGDTREHALLFGYGPGGNGKSVFLNTLSRIMGDYATVAAMDTFTASH---- 240 Query: 546 AGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFT 605 + + L L G+R+V SET E ++IKQMTGGD +TAR + + F Sbjct: 241 GDRHSTDLAMLRGARLVTASETEEGRAWAESRIKQMTGGDPITARFMRQDNF-TFQPQFK 299 Query: 606 PFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKA 665 IV N ++N D+A RR+ ++PF N D KL+ W ++G Sbjct: 300 LTIVGNHKPVLKNVDEAARRRFNIVPFIHKPKNPDKDLESKLQ-GEWPGIMYWMIQGCLE 358 Query: 666 YISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQE 725 + +G+ P V +A E + DT+ W+ + C + +L + + L K + E+ Sbjct: 359 WQREGM--PRPAVVKEATAEYFEAQDTFGQWLAERCILDPSLETKPNMLLKDFQEWCRNN 416 Query: 726 LNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDNSNI 784 + + N + +G + + + + K + ++G+ L+P N Sbjct: 417 GEPE---------SDNKRMRGMLEKTEGVRYHRHKKLGQSVRGIGLRPHLHEAQRWENY 466 >gi|294633256|ref|ZP_06711815.1| DNA primase/helicase [Streptomyces sp. e14] gi|292831037|gb|EFF89387.1| DNA primase/helicase [Streptomyces sp. e14] Length = 502 Score = 325 bits (832), Expect = 2e-86, Method: Composition-based stats. Identities = 84/485 (17%), Positives = 171/485 (35%), Gaps = 36/485 (7%) Query: 298 IPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMN 357 +P L +D N +F + F + + ++W K Sbjct: 39 MPTAPLPPSLTDRGNARLFVRLHRDQFRHV---------EGLGWFVWDGYRWKRGGGEKA 89 Query: 358 FLVSMKEDVFDLSE-EPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFS 416 L + E D+ + +P + ++ + K+ +A S Sbjct: 90 ALWAAGEMAEDMPDSDPRGVFSEREIAHH-------KRRTLSTAGMKALLTQAKASPDLS 142 Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY 476 + D LD L G++DL G K + + + + ++ Sbjct: 143 VDPDDLDGDPYALCTPAGVVDLHNGHIRKADPTRDFHSRATSVAPQRMETPRWHRFLADT 202 Query: 477 FESE----EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532 F + E++D+ +G ++ G AQ + G G +GKS L++ + G+ Sbjct: 203 FGDDAEGREMIDFLHLMLGYSITGDVGAQVLPFLHGEGKNGKSVLLDTMIQILGDYADAA 262 Query: 533 AEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLN 592 + + + + L L G R+V+ SE ND+ + A+++ +TGGD + AR Sbjct: 263 PPGFLMDRGAF---SEHSTELTELHGRRLVVCSELKPNDKFDEARVRLLTGGDKIKARRM 319 Query: 593 YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETK 650 Y + +++ N V A+WRR ++PF + + R + A +L Sbjct: 320 -RQDYFSFTPTHHLWLLGNHRPEVSTGGFAFWRRIRLLPFTRTVPAERRIDNLAFELVRD 378 Query: 651 YTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIG----EN 706 +W ++G + Y++ ++ P+ A D ++ +CC + Sbjct: 379 EGPGILQWLIEGAQRYLATRDPLEGPDRVRIATSAYASTEDHIGRFLAECCTRDGENARD 438 Query: 707 LWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRII 766 L E L YS + + + R ++Q G+ + ++ Sbjct: 439 LRVEQGLLYTEYSSWCHA--GEGIRPATPRAFANRVRQ---EVGVASPADMIKSNGRKYY 493 Query: 767 KGLKL 771 G+ L Sbjct: 494 PGIAL 498 >gi|222112386|ref|YP_002554650.1| hypothetical protein Dtpsy_3221 [Acidovorax ebreus TPSY] gi|221731830|gb|ACM34650.1| phage/plasmid primase, P4 family [Acidovorax ebreus TPSY] Length = 760 Score = 324 bits (829), Expect = 4e-86, Method: Composition-based stats. Identities = 117/710 (16%), Positives = 216/710 (30%), Gaps = 81/710 (11%) Query: 80 TFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYN 139 DT L G + ++ K K+ + + + G Sbjct: 102 RVLDTATELVGRAPATLARRGK--------KDAPVDDLGPATAKWDY-LDAQGHLIAVVY 152 Query: 140 IH--PKTKKEYT-W------TTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKS 190 + P KK++ W PP + + P ++ L + ++ L++ Sbjct: 153 RYDPPGQKKQFRPWDAKRRKMAPPDPRPLYNQPGMTSAAQVVLVEG-EKCAQALIEAGIV 211 Query: 191 IIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIA 250 + N + + A + + A+ + G+ + Sbjct: 212 ATTAMHGANAPVDKTDWSPLLAKAVLIWPDRDKPGWEYATQAAQAI--LSAGAKSCHVL- 268 Query: 251 RRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASR---- 306 Y E WD D G T H + S Sbjct: 269 ---------YPPEEAAEGWDVADAIAEGFDVATFLTHGPRLQMHDVADDVDPVVSSDESV 319 Query: 307 -FSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKED 365 ++ F+ + Y A W +W + + ++ + Sbjct: 320 WGTEDALALSFTRRYHRDWRYVA---GW-----GKWLVWDGQRWRTEDT-----LAATDL 366 Query: 366 VFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSS 425 + + + N + S + A + T+D D+ Sbjct: 367 IRSVCRQTAVRADN----------PKVAAKLASASTVGGVERLARADRRHAATTDEWDAD 416 Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE-SEEVMD 484 L G++DL+TG+ + +TK T + + +E+ Sbjct: 417 PWLLNTPGGVVDLKTGRMRPHERADRMTKITTA--TPSGDCPTWKQFIDEVTGGDKELQS 474 Query: 485 YFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544 Y R VG AL G + + G G +GKS +N + G+ + + Sbjct: 475 YLQRMVGYALTGSTQEHALFFLYGTGANGKSVFVNTLATILGDYATNAPMDTFMETR--- 531 Query: 545 EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604 + + L G+R V ET + +K+K +TGGD ++AR + E F Sbjct: 532 -TDRHPTDMAGLRGARFVAAIETEQGKRWAESKLKNLTGGDKISARFM-RQDFFEFFPQF 589 Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKG 662 F+ N +RN D+A RR +IPF + RD + QKL W ++G Sbjct: 590 KLFVAGNHRPAIRNIDEAMKRRLHLIPFTITVPPERRDKNLQQKL-LAERDGILAWAVQG 648 Query: 663 VKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYR 722 + G + P+ + A EE + D W+D+ C N + L + + Sbjct: 649 CLDWQRHG-RLSPPQRVVDATEEYFEAEDALGRWLDERCVREANAKSLTAELFNDWKPWA 707 Query: 723 EQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLK 772 E + S + L +G + R +G+ LK Sbjct: 708 EAAGEFT---GSQKRFADLLLNRGLDK-------WRNGMGLRGFQGIGLK 747 >gi|327134279|dbj|BAC76547.2| putative DNA primase/helicase [Streptomyces rochei] Length = 500 Score = 323 bits (827), Expect = 8e-86, Method: Composition-based stats. Identities = 92/491 (18%), Positives = 176/491 (35%), Gaps = 35/491 (7%) Query: 294 HGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITA 353 G+ GLL SD N +F + + + + W T ++ Sbjct: 37 AGEATADGLLPDTLSDRGNAKLFVSFYADDYRHVP---------GLGWFRWDGTRWQVDE 87 Query: 354 SIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYR-RQNVEENSKAKSTAQSLEAG 412 ++ + E R R+ S + ++ Sbjct: 88 DDT--------VLWAAGDLAELLASTDPRGVHSAAALQRHRRRALSTSGMNAMLTQAKSA 139 Query: 413 SIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDL 472 + + LLD+ L GI+DL TGQ + + E P+ ++ Sbjct: 140 PGMVLNAALLDADPYALCTPAGIVDLRTGQTRTSHPDRDFHSCSTAVAPEAVPTPRWVRF 199 Query: 473 VSGYFES----EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 ++ F +E++ + +G ++ G AQ + G G +GKS L++++ G+ Sbjct: 200 LTDTFGEGAEGQEMIGFLQLLLGYSITGDVGAQVMPFLFGSGKNGKSVLLDVLMKLLGDY 259 Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588 + + L L G R+V+ SE D + A++K +TGGD + Sbjct: 260 ADAAPPGFLMAR----PYEGHPTDLAELHGRRVVVCSEVKPGDRFDEARVKLLTGGDRIK 315 Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDA--SFAQK 646 AR + + +++ N V A+WRR +IPF++ + + + A Sbjct: 316 ARRM-RQDFFSFRPTHKLWLLGNHRPEVGTGGFAFWRRLRLIPFERVVPDDRKVDNLADI 374 Query: 647 LETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGEN 706 L T+ W + G + Y+S D+ PE A + D ++ + C I Sbjct: 375 LVTEEGPGILNWLIVGARRYLSGEKDLTGPERVRIATTAYAETEDHTGRFLGESCTIEPG 434 Query: 707 LWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRII 766 L E L +Y + + E + +S+R +++ G+ K ++ Sbjct: 435 LRAEQTQLYAAYRAWCQNE---EAPAVSSRAFAARVREL---VGLASPKEMILSNQRKYY 488 Query: 767 KGLKLKPAFES 777 G+ L A E+ Sbjct: 489 PGIGLVAAEET 499 >gi|30795061|ref|NP_851511.1| putative DNA primase/helicase [Streptomyces rochei] Length = 471 Score = 323 bits (827), Expect = 8e-86, Method: Composition-based stats. Identities = 92/491 (18%), Positives = 176/491 (35%), Gaps = 35/491 (7%) Query: 294 HGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITA 353 G+ GLL SD N +F + + + + W T ++ Sbjct: 8 AGEATADGLLPDTLSDRGNAKLFVSFYADDYRHVP---------GLGWFRWDGTRWQVDE 58 Query: 354 SIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYR-RQNVEENSKAKSTAQSLEAG 412 ++ + E R R+ S + ++ Sbjct: 59 DDT--------VLWAAGDLAELLASTDPRGVHSAAALQRHRRRALSTSGMNAMLTQAKSA 110 Query: 413 SIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDL 472 + + LLD+ L GI+DL TGQ + + E P+ ++ Sbjct: 111 PGMVLNAALLDADPYALCTPAGIVDLRTGQTRTSHPDRDFHSCSTAVAPEAVPTPRWVRF 170 Query: 473 VSGYFES----EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 ++ F +E++ + +G ++ G AQ + G G +GKS L++++ G+ Sbjct: 171 LTDTFGEGAEGQEMIGFLQLLLGYSITGDVGAQVMPFLFGSGKNGKSVLLDVLMKLLGDY 230 Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588 + + L L G R+V+ SE D + A++K +TGGD + Sbjct: 231 ADAAPPGFLMAR----PYEGHPTDLAELHGRRVVVCSEVKPGDRFDEARVKLLTGGDRIK 286 Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDA--SFAQK 646 AR + + +++ N V A+WRR +IPF++ + + + A Sbjct: 287 ARRM-RQDFFSFRPTHKLWLLGNHRPEVGTGGFAFWRRLRLIPFERVVPDDRKVDNLADI 345 Query: 647 LETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGEN 706 L T+ W + G + Y+S D+ PE A + D ++ + C I Sbjct: 346 LVTEEGPGILNWLIVGARRYLSGEKDLTGPERVRIATTAYAETEDHTGRFLGESCTIEPG 405 Query: 707 LWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRII 766 L E L +Y + + E + +S+R +++ G+ K ++ Sbjct: 406 LRAEQTQLYAAYRAWCQNE---EAPAVSSRAFAARVREL---VGLASPKEMILSNQRKYY 459 Query: 767 KGLKLKPAFES 777 G+ L A E+ Sbjct: 460 PGIGLVAAEET 470 >gi|300689921|ref|YP_003750916.1| DNA primase, phage/plasmid [Ralstonia solanacearum PSI07] gi|299076981|emb|CBJ49594.1| putative DNA primase, phage/plasmid [Ralstonia solanacearum PSI07] Length = 759 Score = 322 bits (826), Expect = 9e-86, Method: Composition-based stats. Identities = 90/469 (19%), Positives = 163/469 (34%), Gaps = 45/469 (9%) Query: 308 SDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVF 367 ++ F+ + Y A AW +W + + ++ + + Sbjct: 321 TEDALALAFTRRYHRDWRYVA---AW-----GRWLVWDGHRWRTEDT-----LAATDLIR 367 Query: 368 DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSR 427 ++ + +N K + + + A + T+ D+ Sbjct: 368 NVCRHAALHAENPKLA----------AKLATSGTIAGVERLARADRRHAATTSEWDADPW 417 Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE-SEEVMDYF 486 L ++DL TG++ ++ +TK T G + ++ E+ Y Sbjct: 418 LLNTPGSVVDLRTGRQRPHDRDDRMTKITTA--TPGGDCPTWRQFLAEVTGGDAELQAYL 475 Query: 487 TRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEA 546 R G AL G + + G G +GKS +N + G+ A + + Sbjct: 476 QRMAGYALTGSTQEHALFFLYGTGANGKSVFVNTLATILGDYAANAAMDTFMETR----T 531 Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 + + L G+R V ET + +K+K +TGGD ++AR + E F Sbjct: 532 DRHPTDMAGLRGARFVAAIETEQGRRWAESKVKNLTGGDKISARFM-RQDFFEFFPQFKL 590 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVK 664 F+ N +RN D+A RR +IPF + RD QKL W ++G Sbjct: 591 FVAGNHKPAIRNIDEAMKRRLHLIPFTVTVPPERRDKHLQQKL-LAERDGILAWAVQGCL 649 Query: 665 AYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQ 724 + G +D P+ L A EE + D W+D+ C N + L + ++ E Sbjct: 650 DWQRLG-RLDPPQQVLDATEEYFEAEDALGRWLDERCVREANAKSLTAELFNDWKQWAEA 708 Query: 725 ELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773 + S + L +G + R +G+ LK Sbjct: 709 AGEFA---GSQKRFADLLLTRGVEK-------WRNTAGLRGFRGVGLKH 747 >gi|254384016|ref|ZP_04999362.1| conserved hypothetical protein [Streptomyces sp. Mg1] gi|194342907|gb|EDX23873.1| conserved hypothetical protein [Streptomyces sp. Mg1] Length = 495 Score = 322 bits (826), Expect = 1e-85, Method: Composition-based stats. Identities = 93/479 (19%), Positives = 177/479 (36%), Gaps = 38/479 (7%) Query: 306 RFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKED 365 +D N +F+ F + + Y+W K T K Sbjct: 25 NLTDRGNAKLFAHLHHDRFRHV---------EGLGWYVWDEYRWKRTGGE-------KAA 68 Query: 366 VFDLSEEPEDNNKNSKSPRFWFNTDYR-RQNVEENSKAKSTAQSLEAGSIFSITSDLLDS 424 ++ + ED + F + R+ S K+ +A ++ D LD Sbjct: 69 IWAAGDMAEDLPAHDPRGVFTDRELAQHRKRTMSTSGVKAMLTQAKASPELALDPDTLDG 128 Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFES----E 480 L G++DL TG KP + E P+ F + F + Sbjct: 129 DKYALCTPAGVVDLRTGDLHKPDPTRDLHSRATHLAPEAMPTPRFHCFLKQTFGDDDKGK 188 Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540 E++ + +G ++ G Q + GVG +GKS L++++ G+ + + + Sbjct: 189 EMIHFLHLLLGYSITGDVGGQVLPFLYGVGANGKSALLDVVIKILGDYADVAPPGFLMER 248 Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600 + + + L L G R+ + SE +D+ + A++K +TGGD + AR + Sbjct: 249 GKF---NEHSTELTELHGRRLFVCSELKPHDKFDEARVKLLTGGDRLKARRM-RQDFFSF 304 Query: 601 PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDA--SFAQKLETKYTLEAKKW 658 + +++ N V A+WRR +IPF+K + + + A+ L + W Sbjct: 305 EPTHKLWLLGNHRPEVGTGGHAFWRRIRLIPFEKVVPDHRKIDNLAETLVQEEGPGILHW 364 Query: 659 FLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE------NLWEESH 712 ++G KAY++ + P V A + D ++ +CC G +L E Sbjct: 365 MIQGAKAYLASKPPLTGPSVVRTATQAYATTEDHIGRFLAECCTTGAELPDPRDLKVEQG 424 Query: 713 SLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771 +L ++YS + + +TR ++ G+ ++ GL L Sbjct: 425 ALYRAYSAWCLD--GEGLRPATTRAFATRIRA---EVGVASPNEMLRSNGQKFYPGLAL 478 >gi|225018075|ref|ZP_03707267.1| hypothetical protein CLOSTMETH_02012 [Clostridium methylpentosum DSM 5476] gi|224949072|gb|EEG30281.1| hypothetical protein CLOSTMETH_02012 [Clostridium methylpentosum DSM 5476] Length = 775 Score = 322 bits (826), Expect = 1e-85, Method: Composition-based stats. Identities = 122/785 (15%), Positives = 242/785 (30%), Gaps = 47/785 (5%) Query: 5 QWKEQAKQAIHNGFKLIPLRLGDK---RPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVG 61 Q K + + G P+ + + W + + K G GF Sbjct: 12 QLKALPQWVVRRG--KCPINPATGQGAKAGQPDTWTTFERAVQASRKY--DGIGFEF--H 65 Query: 62 EQPLYAFDIDS----KDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKK 117 + DID + + ++ + + Sbjct: 66 NNGIVGIDIDHCIDEETGEIDPAALAIIRTMNSYTEKSPSGTGLHIYVYGDIPS-----S 120 Query: 118 TTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFK-F 176 ++ + ++++ +YF P K L + + L + Sbjct: 121 GRKNPKRNIEMYKEKRYFTVTGEVF--GDCTKVARRPDEVKALYNELFPKPNKPALLRGR 178 Query: 177 FQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAV 236 T D+ + + + T E + ++ + Y + D A+ Sbjct: 179 MSPQTSVSSLDRGLQHDRELQRLWSGERNTGDESSNDMALMNKLAYWCNRD-----AAAM 233 Query: 237 HHETRGSSKGKEIARRWSKQGSTYD------EENFNYKWDTFDFEEIGDTAKKRSTFTSL 290 R S ++ + + D E T + K Sbjct: 234 VQAFRESPYTQQKDEKHLAKLERDDYLPRTAERAIADCQRTAADDRDEYRRNKVERAKQA 293 Query: 291 FYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDK 350 + + L +D MF+ +G LY + K+++ + Sbjct: 294 SQPASPITAESLKKYALNDKGAAQMFADTYRGRTLYLPEYKSYWTYKNGVWIQ-DKQDLQ 352 Query: 351 ITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLE 410 + + + + + P + + P YR+ + S + Sbjct: 353 TRQLVKRWTDYVLSVIPEKQLSPIQYDPTTGKPPEDEWEVYRKHYGKYCSLRSRDNLIKD 412 Query: 411 AGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFL 470 A + S D + ++G L+LE + + ++K + FL Sbjct: 413 ARDELAGYSTDFDRNPALFNCKNGTLNLENLKLLPHNPADMLSKQANVNYDPAASCPRFL 472 Query: 471 DLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRG-VGGSGKSTLMNLIKYAFGNQ 528 + +EE + F + +G AL G + F G +GK TL + + FG+ Sbjct: 473 QFIEEITEGNEERANMFQKALGYALQGDANEECFFLALGKKTRNGKGTLFDSVMNVFGSY 532 Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588 + + I + + +A P L RL+G+RIVI +E ++ IN A +KQ+TG D +T Sbjct: 533 -GAQMDFNTIARGGVKDGSRATPDLARLIGTRIVISNEPDKGVAINEALLKQLTGNDDIT 591 Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDASFAQK 646 R YG+ + +F F+ N V + R ++PF + RD S Sbjct: 592 CRPLYGD-TIQFKPAFKLFVTANSKPSVSDDSLFASDRIKMLPFTQHFKEDQRDTSLKAL 650 Query: 647 LETKY-TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE 705 ++ W L+G + Y +GL E R+ D ++DD D Sbjct: 651 FRSEEAKSSILNWLLEGYRKYKEEGLRDT--AEMKALAAEYRKENDYVGMFLDDRFDRDA 708 Query: 706 NLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEW--KSK 763 + +L Y+ + + K + R L + ++ + + Sbjct: 709 PRYTTVKALRADYATWCDFVGA---KPMGLRLFKEELPKHDLPLRTVHKQFCVCGAIRPE 765 Query: 764 RIIKG 768 R G Sbjct: 766 RDYTG 770 >gi|254385240|ref|ZP_05000571.1| conserved hypothetical protein [Streptomyces sp. Mg1] gi|194344116|gb|EDX25082.1| conserved hypothetical protein [Streptomyces sp. Mg1] Length = 464 Score = 321 bits (823), Expect = 2e-85, Method: Composition-based stats. Identities = 89/479 (18%), Positives = 173/479 (36%), Gaps = 35/479 (7%) Query: 300 KGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFL 359 GL+ SD N +F G + + Y W T ++ Sbjct: 7 AGLIPDTLSDRGNAKLFVRLYAGDYRHVP---------GLGWYRWDTTRWQVDEDDT--- 54 Query: 360 VSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYR-RQNVEENSKAKSTAQSLEAGSIFSIT 418 V+ + E + R+ S + +A + Sbjct: 55 -----VVWAAGDLAEAIATTDPRGIHSNQALQKHRRRALSTSGMNAMLTQAKAAPGMVLR 109 Query: 419 SDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE 478 ++LLD+ L GI+DL TG P + + + + +P+ + ++ F Sbjct: 110 AELLDADPYALCTPAGIVDLHTGLIRTPEPDKDFHSRSTSTAPKSQPTPRWNRFLADTFG 169 Query: 479 SE----EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534 + E+ D+ +G ++ G AQ + G G +GKS L++++ G+ Sbjct: 170 DDAEGREMTDFLHLMLGYSITGDVGAQVMPFLFGSGKNGKSVLLDVLMKLLGDYADAAPP 229 Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594 + + L L G R+++ SE D+ + A++K +TGGD + AR Sbjct: 230 GFLMARTFE----GHPTELAELHGRRVIVCSEVKPGDKFDEARVKLLTGGDRIKARRM-R 284 Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDASFAQKLETKYT 652 + + +++ N V A+WRR ++PF+K +++ + + A L T+ Sbjct: 285 QDFFSFAPTHKLWLIGNHRPEVGTGGFAFWRRMRLVPFEKVVSDDRKIDNLADILVTEEG 344 Query: 653 LEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESH 712 W + G + Y++ D+ P A + D + ++CC + E Sbjct: 345 PGILAWLIDGARRYLAGEKDLTGPAPVRIATTAYAETEDHTGRFFEECCTFDPDHRAEQA 404 Query: 713 SLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771 L Y + + E +S+R ++ G+ K SK+ G+ L Sbjct: 405 RLYSVYRTWCQNEGA---PTVSSRAFASRAREL---VGLASPKEMILSNSKKYYPGIGL 457 >gi|284504180|ref|YP_003406895.1| D5 family helicase-primase [Marseillevirus] gi|282935618|gb|ADB03933.1| D5 family helicase-primase [Marseillevirus] Length = 903 Score = 321 bits (823), Expect = 3e-85, Method: Composition-based stats. Identities = 118/655 (18%), Positives = 227/655 (34%), Gaps = 60/655 (9%) Query: 177 FQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFL-SCFGEEFYNGSHDEWIPVVMA 235 + I K + P++ + E+ + ++D+W+ V Sbjct: 265 VRGIIPSEKKMTRRKRPARLTKTVDQIMADIAEVRNSRVLDMLDSSRAENYDDWMNVGWT 324 Query: 236 VHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIG-------DTAKKRSTFT 288 + + G + E+ +S + S +DE+ Y WDT + + + Sbjct: 325 LFNIGNGLPEALELWIDFSSRASNFDEKKCEYLWDTMEMKGKSIGSLYQMAKNDNPEKYN 384 Query: 289 SLFYH-HGKLIPKGLLASRFSDA-YNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSL 346 + + + A++ + A + Y + WY+ + + Sbjct: 385 DWKKEKSSEAMKGAMTAAKPTHANIASLIHIKYSDRFVCADSKANVWYEFRGHRWHKMDD 444 Query: 347 TLDK---ITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAK 403 + I+ + + ++ + +D N + + + K Sbjct: 445 ANELMRIISFELPEEFRVEINRLSAITGQSQDPNSQLTIKKCVDIQSKLQMDGFSQGVMK 504 Query: 404 STAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPF--- 460 + S LD + LG +DG+ DL+ G + + YI+ STG + Sbjct: 505 MCKRLFLNEHFLS----KLDENRDLLGMEDGVCDLKLGIFRDGSPDDYISMSTGISYKAL 560 Query: 461 -VEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMN 519 E E + + F + + R V + GGN+ +R G G +GKS + Sbjct: 561 SEEDRSVIECREFLKKLFPNPRIRKCALRMVSSCMQGGNRNKRIYICTGKGNNGKSVFFS 620 Query: 520 LIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIK 579 L++Y FG + + R A P L R G+R +I E ++N++ N +K Sbjct: 621 LLEYIFGQYLIKFPREMCLAG-RAGNPSSARPELARAPGTRYGVIQEVHKNEKFNPGILK 679 Query: 580 QMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI-AN 638 +++G D R + + FT F++ NK V D A W R +IPF+ + Sbjct: 680 ELSGNDSFFVRNLFEKG-RDIKPMFTIFMMANKPPGVPGSDQATWNRIRLIPFEATFLSE 738 Query: 639 RDASFAQKLET-------------KYT-LE---AKKW-FLKGVKAYISKGLDVDIPEVCL 680 +D ++ + E + A W ++ + Y +GL PE Sbjct: 739 QDENWIEDPELRREAKMFKADEHFEEKIPGLAHALLWLCVEDFRKYKEEGL--CEPEEVE 796 Query: 681 KAKEEERQGTDTYQAWIDDCCDIGENLWE-------ESHSLAKSYSEYREQELNYDRKRI 733 A + R DT + +I DC + E L Y E+ ++ R Sbjct: 797 AATAKMRARNDTIRKYIRDCLIVDREKKEDDEKTFLTVSELFNHYKEWHDENFPSYAVRK 856 Query: 734 STRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDNSNIIDFK 788 + + K F +K + I + +GL K E+++D+ D Sbjct: 857 TMTILKFR---KQFARAVKIQPINGKK-----FEGLSFK-EQENLEDDEGKGDED 902 >gi|190573868|ref|YP_001971713.1| hypothetical protein Smlt1886 [Stenotrophomonas maltophilia K279a] gi|190011790|emb|CAQ45410.1| putative phage-related protein [Stenotrophomonas maltophilia K279a] Length = 766 Score = 321 bits (823), Expect = 3e-85, Method: Composition-based stats. Identities = 102/534 (19%), Positives = 178/534 (33%), Gaps = 54/534 (10%) Query: 260 YDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASR-----FSDAYNKA 314 Y E+ WD D G + H +A ++ Sbjct: 275 YPPEDAPEGWDAADAIAEGFDVATFLSHGPRLQMHDLADTDEPVAGSDESVWGTEDALAL 334 Query: 315 MFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPE 374 F+ + Y A AW +W + + ++ + + + + Sbjct: 335 AFTRRYHRDWRYVA---AW-----GRWLVWDGQRWRTEDT-----LAATDLIRSVCRQTA 381 Query: 375 DNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDG 434 N + + + A + T+D D+ L G Sbjct: 382 VRADN----------PKVAAKLASSGTVSGVERLARADRRHAATTDEWDADPWLLNTPGG 431 Query: 435 ILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE-SEEVMDYFTRCVGMA 493 ++DL+TG++ + +TK T +L + + + Y R VG A Sbjct: 432 VVDLKTGRQRPHERADRMTKVTTA--TPSGECPTWLQFIDEVTGGDQALQAYLQRMVGYA 489 Query: 494 LLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL 553 L G + + G G +GKS +N + G+ + + + + Sbjct: 490 LTGATQEHALFFLYGTGANGKSVFVNTLATILGDYATNAPMDTFMETR----TDRHPTDM 545 Query: 554 IRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKH 613 L G+R V ET + +K+K +TGGD ++AR + E F F+ N Sbjct: 546 AGLRGARFVAAIETEQGRRWAESKVKNLTGGDKISARFM-RQDFFEFFPQFKLFVAGNHK 604 Query: 614 LFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGL 671 +RN D+A RR +IPF + RD QKL W ++G + G Sbjct: 605 PAIRNIDEAMKRRLHLIPFTITVPPERRDKHLQQKL-LAERDGILAWAVQGCLDWQRHG- 662 Query: 672 DVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRK 731 +D P+ ++A EE + D W+D+ C N + L + ++ E + Sbjct: 663 RLDPPQRVVEATEEYFEAEDALGRWLDERCVREANAKSLTAELFNDWKQWAEAAGEFT-- 720 Query: 732 RISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLK----PAFESVDDN 781 S + L +G + R +GL LK PA+ DN Sbjct: 721 -GSQKRFADLLLTRGLDK-------WRNGMGLRGFQGLGLKYPPAPAYTPYADN 766 >gi|57233571|ref|YP_180824.1| phage/plasmid DNA primase, putative [Dehalococcoides ethenogenes 195] gi|57224019|gb|AAW39076.1| phage/plasmid DNA primase, putative [Dehalococcoides ethenogenes 195] Length = 757 Score = 321 bits (822), Expect = 3e-85, Method: Composition-based stats. Identities = 111/581 (19%), Positives = 205/581 (35%), Gaps = 55/581 (9%) Query: 233 VMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFY 292 + + + +K +E W + + +++ + S Sbjct: 204 GRVIKKYGDSDAAFQCFLEEAAKCSPPLEEAELMTIWHS--AQRFFSKVQQQDGYVSPEV 261 Query: 293 HHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWS-----LT 347 ++ P + FSD + + Y G Y+ T + + + + Sbjct: 262 YND---PTSYMPGDFSDVGQAEVLAKYFSGELRYSPATH-FIRYTSHYWQESEPGAQAVA 317 Query: 348 LDKITASIMNFLVSMKEDVFDLSEE-PEDNNKNSKSPR---------------FWFNTDY 391 + + ++ + L+E +D +N+ + F Y Sbjct: 318 HELTRRQLEEATKDLQSAMRLLTENGAQDILENASKAKAESLMNETQLEAYRAFLSAKAY 377 Query: 392 RRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQK--VKPTKE 449 + + TA E+ + I+ LD+ L DL G + + + Sbjct: 378 QSFAIRRRDSKNITATLKESRPMLEISPRDLDADCFLLCTPAATYDLRKGMTGAREHSPD 437 Query: 450 LYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRG 508 +ITK T Q + + + F ++E++DY G+A +G + I G Sbjct: 438 DFITKMTSVSPSSKGE-QIWQNSLGLIFCGNQELIDYVQMICGLAAIGKVYVEALIIAYG 496 Query: 509 VGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN 568 G +GKST N I G + + + R P + + G R++I +E Sbjct: 497 GGRNGKSTFWNAISRVLGLYSGNISADTLTVGCRR----NIKPEMAEVKGKRLLIAAEIQ 552 Query: 569 ENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYI 628 E +N + +KQ+ D + A Y + +S T + N V DD WRR + Sbjct: 553 EGARLNDSTVKQLCSTDDVFAEKKYKDPFS-FTPCHTLVLYTNHLPKVSASDDGIWRRLV 611 Query: 629 VIPFDKPIANRD--ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEE 686 VIPFD I ++ + L W ++G K I+ + +P +A E Sbjct: 612 VIPFDAKIEGSSDIKNYGEYLYQNAGESILAWVIEGAKKVIALDYKIPVPVCVQQAITEY 671 Query: 687 RQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746 R D + ++++ C++ + E S SL ++Y Y Y R ST L+ G Sbjct: 672 RSQNDWFGHFLEEKCELDASYRESSSSLYRAYRNYCVDTNEYIR---STTDFYSALEAAG 728 Query: 747 FIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDNSNIIDF 787 + K+KR GL+LK D+ + DF Sbjct: 729 YG--------RINVKNKRFFAGLRLKI------DDGDFEDF 755 >gi|256617080|ref|ZP_05473926.1| phage DNA polymerase [Enterococcus faecalis ATCC 4200] gi|257088357|ref|ZP_05582718.1| phage DNA polymerase [Enterococcus faecalis D6] gi|256596607|gb|EEU15783.1| phage DNA polymerase [Enterococcus faecalis ATCC 4200] gi|256996387|gb|EEU83689.1| phage DNA polymerase [Enterococcus faecalis D6] Length = 748 Score = 320 bits (820), Expect = 5e-85, Method: Composition-based stats. Identities = 121/666 (18%), Positives = 228/666 (34%), Gaps = 68/666 (10%) Query: 147 EYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYT 206 + P +D + ++ + F +F + + + S+ +++ T Sbjct: 111 RFHVYFPIETVADKDEYVNLKQQINEAFPYFDDNAMDAARLLFGTSNSEVEIYEGSKRVT 170 Query: 207 N---REITAFLSCFGEEFYNGSHDEWIP-VVMAVHHETRGSSKGKEIARRWSKQG-STYD 261 + ++ A E GS + + + + + + +++ Sbjct: 171 DVLSEDLFADWESRLSEIGEGSRNSTMSHIAGKLIKRYGAKEETYHLFLEQAEKCNPPLP 230 Query: 262 EENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKK 321 +E W++ G K++ + ++ L + +SD + + + Sbjct: 231 DEELKSIWNS--AVRFGKKVKQQEGYIPPEQYNK---DTELEPTDYSDVGQATVLAREYE 285 Query: 322 GHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSM--------------KEDVF 367 Y+ T +++ + + +A + K+ Sbjct: 286 CKLRYSPSTD---------YIVYNGSYWEESAPKSQAVAQALTERQLEEAETAIAKQTQE 336 Query: 368 DLSEEPEDN--------------NKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLE-AG 412 + + + S + + ++ + K + +L+ A Sbjct: 337 MVKNGAFAILASVGPKKAVPMFNKEQAHSYELFESAQAYKKYAVKRRDDKYLSSALKVAR 396 Query: 413 SIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDL 472 + I +LD + L DL TG E YITK T Q + D Sbjct: 397 PMLEIEQRILDVNEFLLNTPSATYDLRTGYTQDHKAEDYITKQTECDPSSNNE-QLWFDA 455 Query: 473 VSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVI 531 ++ F +E++DY VG+A +G + I G G +GKST N+I GN Sbjct: 456 LNTIFVGDQELIDYVQMIVGLAAIGKVYVEALIISYGEGRNGKSTFWNVISRVLGNYSGS 515 Query: 532 NAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARL 591 + Q R P L G R++I +E E +N + IKQ+ D + A Sbjct: 516 ISADILTSQIRR----NVKPELAEAKGKRLLIAAELEEGMRLNTSNIKQLCSTDEIAAEK 571 Query: 592 NYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD--ASFAQKLET 649 Y + + + T + N V D WRR IVIPF I ++A L Sbjct: 572 KYKDPF-RYVPTHTLVLYTNHLPKVGAIDKGTWRRLIVIPFLATIEGNKDVKNYADYLFE 630 Query: 650 KYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWE 709 KW L+G K I+ + +P V +A EE + D ++++CC+ E Sbjct: 631 NAGGAVLKWILEGAKRVIAADYKLPVPRVVNEAIEEYKAANDWLGHFLEECCETDSEYVE 690 Query: 710 ESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGL 769 +S + Y + + Y R S+ ++ GF K R IKGL Sbjct: 691 KSGEVYSEYRAFCMRTGEYTR---SSADFYAAIENAGFA--------RHRNKKGRYIKGL 739 Query: 770 KLKPAF 775 ++K F Sbjct: 740 RVKSEF 745 >gi|302035479|ref|YP_003795801.1| putative DNA primase' [Candidatus Nitrospira defluvii] gi|300603543|emb|CBK39873.1| putative DNA primase, P4 family (phage related) [Candidatus Nitrospira defluvii] Length = 763 Score = 320 bits (819), Expect = 7e-85, Method: Composition-based stats. Identities = 99/570 (17%), Positives = 179/570 (31%), Gaps = 71/570 (12%) Query: 219 EEFYNGSHDEWIPVVMAVHHETRGSSKGK-------EIARRWSKQGSTYDEENFNYKWDT 271 + D A+ + + E +D F + Sbjct: 240 PDRDAPGWDYADRASQAILNAGATTVAILMPPDDKPEGWDAADAIPEDFDVGGFLAVGER 299 Query: 272 FDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTK 331 + + + ++ F+ + Y A Sbjct: 300 MPVMRSVEETPSPDLLNGIDW--------------TTEDGLSTAFTRRYGEDWRYCA--- 342 Query: 332 AWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDY 391 W +W+ ++ + + +T Sbjct: 343 LW-----GKWLVWTGVRWNPD-----QVLYVSHLARGICRNAS----------LKADTPR 382 Query: 392 RRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELY 451 + + ++ S + + + T++ D+ L G++DL TG+ ++ Sbjct: 383 LKGKLASSATISSVEKIARSDPKHASTAEEWDADVWALNTPGGVVDLRTGRMRPHRRDDR 442 Query: 452 ITKSTGTPF--VEGEPSQEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRG 508 +TK T + ++ ++M Y VG L G + G Sbjct: 443 MTKVTTATPQGNPDSACPTWRGFLTDVTGGDADLMAYLQLMVGYCLTGVTSEHALFFLYG 502 Query: 509 VGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN 568 G +GKS +N++ G+ + + + L L G+R V ET Sbjct: 503 TGANGKSVFVNVLTTILGDYAANAPMDTFME----ARTDRHPTDLAGLRGARFVSSIETE 558 Query: 569 ENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYI 628 + N +K+K +TGGD ++AR + E F I N +RN D+A RR Sbjct: 559 QGRRWNESKVKAITGGDKVSARFM-RQDFFEYLPQFKLVIAGNHKPSIRNVDEAMKRRLH 617 Query: 629 VIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEE 686 +IPF I RD +KL K W ++G + +GL P + A EE Sbjct: 618 LIPFTVTIPPERRDGRLTEKL-LKERDGILAWAVEGCSRWQRQGLKP--PASVVSATEEY 674 Query: 687 RQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNY--DRKRISTRTVTLNLKQ 744 + D WI++ C + ++ E L + E+ E+ Y KR S T ++ Sbjct: 675 FEAEDALGQWIEERCLLAKSHREGVSELFADWREWAERAGEYVGSVKRFSELMATRKFEK 734 Query: 745 KGFIGGIKREKIEKEWKSKRIIKGLKLKPA 774 GG R I G+ L+P Sbjct: 735 CRLTGG------------ARAIAGIALRPK 752 >gi|309781007|ref|ZP_07675746.1| prophage LambdaMc01, DNA primase, P4 family [Ralstonia sp. 5_7_47FAA] gi|330824596|ref|YP_004387899.1| phage/plasmid primase, P4 family [Alicycliphilus denitrificans K601] gi|308920310|gb|EFP65968.1| prophage LambdaMc01, DNA primase, P4 family [Ralstonia sp. 5_7_47FAA] gi|329309968|gb|AEB84383.1| phage/plasmid primase, P4 family [Alicycliphilus denitrificans K601] Length = 766 Score = 319 bits (818), Expect = 8e-85, Method: Composition-based stats. Identities = 99/534 (18%), Positives = 173/534 (32%), Gaps = 54/534 (10%) Query: 260 YDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASR-----FSDAYNKA 314 Y E WD D G T H + S ++ Sbjct: 275 YPPEEAAEGWDVADAIAEGFDVATFLTHGPRLQMHDVADDVDPVVSSDESVWGTEDALAL 334 Query: 315 MFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPE 374 F+ + Y A W +W + + ++ + + + + Sbjct: 335 SFTRRYHRDWRYVA---GW-----GKWLVWDGQRWRTEDT-----LAATDLIRSVCRQTA 381 Query: 375 DNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDG 434 N + + A + T+D D+ L G Sbjct: 382 VRADN----------PKVAAKLASAGTVGGVERLARADRRHAATTDEWDADPWLLNTPGG 431 Query: 435 ILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE-SEEVMDYFTRCVGMA 493 ++DL+TG+ + +TK T + + +E+ Y R VG A Sbjct: 432 VVDLKTGRMRTHERADRMTKITTA--TPSGDCPTWRQFIDEVTGGDQELQSYLQRMVGYA 489 Query: 494 LLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL 553 L G + + G G +GKS +N + + + + + + Sbjct: 490 LTGSTQEHALFFLYGTGANGKSVFVNTLATILRDYATNAPMDTFMETR----TDRHPTDM 545 Query: 554 IRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKH 613 L G+R V ET + +K+K +TGGD ++AR + E F F+ N Sbjct: 546 AGLRGARFVAAIETEQGKRWAESKLKNLTGGDKISARFM-RQDFFEFFPQFKLFVAGNHK 604 Query: 614 LFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGL 671 +RN D+A RR +IPF + RD + QKL W ++G + G Sbjct: 605 PAIRNIDEAMKRRLHLIPFTITVPPERRDKNLQQKL-LAERDGILAWAVQGCLDWQRHG- 662 Query: 672 DVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRK 731 + P+ + A EE + D W+D+ C N + L + ++ E + Sbjct: 663 RLSPPQRVVDATEEYFEAEDALGRWLDERCVREPNAKSLTAELFNDWKQWAEASGEF--- 719 Query: 732 RISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLK----PAFESVDDN 781 + R + L +G + R +G+ LK PA+ DN Sbjct: 720 VGAQRRFSDLLITRGLDK-------WRNGMGVRGFQGIGLKHPPTPAYTPYADN 766 >gi|294817426|ref|ZP_06776068.1| Putative DNA primase/helicase [Streptomyces clavuligerus ATCC 27064] gi|294322241|gb|EFG04376.1| Putative DNA primase/helicase [Streptomyces clavuligerus ATCC 27064] Length = 532 Score = 319 bits (818), Expect = 9e-85, Method: Composition-based stats. Identities = 92/482 (19%), Positives = 176/482 (36%), Gaps = 37/482 (7%) Query: 301 GLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLV 360 G+L SD N +F F + Y W+ + Sbjct: 75 GVLPDSLSDRGNAKLFVSLYGRDFRHVP---------GLGWYRWNKYRWDLDED------ 119 Query: 361 SMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNV-EENSKAKSTAQSLEAGSIFSITS 419 ++ E E + RF + R + + K+ +A ++ Sbjct: 120 --DGVMWAAGEMAEMLAETDIRGRFTDSALRRHRRRALSTAGIKAMLAQAKAAPGMVLSP 177 Query: 420 DLLDSSSRFLGEQDGILDLETGQKVKPTKELYIT-KSTGTPFVEGEPSQEFLDLVSGYFE 478 +LD+ L +G++DL TG P E + +ST + ++ F Sbjct: 178 SMLDADPYALCTPEGVIDLTTGAVTPPDPEKHYHSRSTSVAARPRAT-PRWKRFLADCFG 236 Query: 479 S----EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534 EE++D+ +G ++ G AQ + G G +GKS L++++ G+ Sbjct: 237 DDAEGEEMIDFLHELLGYSITGDVGAQVLPFLYGQGKNGKSVLLDVMVKLLGDYADAAPP 296 Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594 + + L L G RI++ SE D + A++K +TGGD + AR Sbjct: 297 GFLMARPFE----GHPTDLAELHGRRIIVCSELKPGDRFDEARVKLLTGGDRIKARRM-R 351 Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDA--SFAQKLETKYT 652 + + +++ N V A+WRR ++PF++ + + + A L T+ Sbjct: 352 QDFFSFGPTHKLWLLGNHRPEVGTGGYAFWRRMKLLPFERVVDDDRKVDNLADVLVTEEG 411 Query: 653 LEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESH 712 W ++G + Y++ D+ PE A + D ++ +CC +G ++ E Sbjct: 412 PGILNWLVEGSRRYLTGPRDLTGPERVRTATTAYAETEDHTGRFLSECCTVGPSMRAEQT 471 Query: 713 SLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLK 772 L SY ++ + E ++R ++ GI K ++ G+ L Sbjct: 472 LLYASYRDWCQLEGA---NPATSRAFAARVRD---TVGISSPKEMILSNQRKFYPGIGLN 525 Query: 773 PA 774 Sbjct: 526 AE 527 >gi|17545558|ref|NP_518960.1| hypothetical protein RSc0839 [Ralstonia solanacearum GMI1000] gi|17427851|emb|CAD14541.1| probable bacteriophage-related protein [Ralstonia solanacearum GMI1000] Length = 765 Score = 319 bits (818), Expect = 1e-84, Method: Composition-based stats. Identities = 126/722 (17%), Positives = 231/722 (31%), Gaps = 75/722 (10%) Query: 64 PLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQ 123 D+ ++ + D L T VR R KE E+ + Sbjct: 95 GTLGVDVQTEFPRVLARAADLLG-LASTQPVR-----------RKRKEPPTDDLGPETAK 142 Query: 124 GHLDILGCGQY--FVAYNIHPKTKKEYT-W------TTPPHRFKVEDTPLLSEEDVEYLF 174 + G+ V P KE+ W PP + + P L+ L Sbjct: 143 WDY-LDAAGRLIGVVYRYDPPGRGKEFRPWDAKRRKMAPPDPRPLYNQPGLASATQVVLV 201 Query: 175 KFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVM 234 + + + I + T + N + + + + W Sbjct: 202 EGEKCAQALIDA----GIVATTAMHGANAPVEKTDWSPLAGKAVLIWPDRDKPGWEYADR 257 Query: 235 AVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHH 294 A + + I + +D + + FD + + Sbjct: 258 ASQAILQAGALLVAILLPPDDKPEGWDAADAIEE--GFDVAGYLAAGARVPVVPEVDDSV 315 Query: 295 GKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITAS 354 + +G+ ++ F+ + Y + W +W+ Sbjct: 316 SADVLEGV--DWETEDGLATAFTRRYGDDWRYCS---LW-----GKWLVWTGVRWNPDQL 365 Query: 355 IMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSI 414 + ++ + + ++ F T ++ + +S S + + Sbjct: 366 L--YITHLSRGI-------------CRAASFKAETPRQKAKLASSSTIASVEKIARSDPK 410 Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVS 474 + T+D D+ L G++DL TGQ +E +TK T + +S Sbjct: 411 HAATADEWDADVWALNTPGGVVDLRTGQLRAHRREDRMTKVTTA--TPKGDCPTWRQFLS 468 Query: 475 GYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533 E+ Y R G AL G + + G G +GKS +N + G+ V A Sbjct: 469 EVTGGDVELQAYLQRMAGYALTGSTQEHALFFLYGTGANGKSVFVNTLATILGDYAVNAA 528 Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593 + + A + + L G+R V ET + +K+K +TGGD ++AR Sbjct: 529 MDTFMETR----ADRHPTDMAGLRGARFVAAIETEQGRRWAESKVKNLTGGDKISARFM- 583 Query: 594 GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKY 651 + E F F+ N +RN D+A RR +IPF + RD + QKL Sbjct: 584 RQDFFEFFPQFKLFVAGNHKPAIRNIDEAMKRRLHLIPFTVTVPPARRDKTLQQKL-LAE 642 Query: 652 TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEES 711 W ++G + G +D P+ L A EE + D W+D+ C N + Sbjct: 643 RDGILAWAVQGCLDWQRLG-RLDPPQQVLDATEEYFEAEDALGRWLDERCVREINAKTLT 701 Query: 712 HSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771 L + ++ + + S R + L +G + R +G+ L Sbjct: 702 AELFNDWKQWADSAGEF---VGSQRRFSDLLITRGVEK-------WRNTAGLRGFRGVSL 751 Query: 772 KP 773 K Sbjct: 752 KH 753 >gi|326446240|ref|ZP_08220974.1| putative DNA primase/helicase [Streptomyces clavuligerus ATCC 27064] Length = 507 Score = 319 bits (816), Expect = 1e-84, Method: Composition-based stats. Identities = 92/482 (19%), Positives = 176/482 (36%), Gaps = 37/482 (7%) Query: 301 GLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLV 360 G+L SD N +F F + Y W+ + Sbjct: 50 GVLPDSLSDRGNAKLFVSLYGRDFRHVP---------GLGWYRWNKYRWDLDED------ 94 Query: 361 SMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNV-EENSKAKSTAQSLEAGSIFSITS 419 ++ E E + RF + R + + K+ +A ++ Sbjct: 95 --DGVMWAAGEMAEMLAETDIRGRFTDSALRRHRRRALSTAGIKAMLAQAKAAPGMVLSP 152 Query: 420 DLLDSSSRFLGEQDGILDLETGQKVKPTKELYIT-KSTGTPFVEGEPSQEFLDLVSGYFE 478 +LD+ L +G++DL TG P E + +ST + ++ F Sbjct: 153 SMLDADPYALCTPEGVIDLTTGAVTPPDPEKHYHSRSTSVAARPRAT-PRWKRFLADCFG 211 Query: 479 S----EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534 EE++D+ +G ++ G AQ + G G +GKS L++++ G+ Sbjct: 212 DDAEGEEMIDFLHELLGYSITGDVGAQVLPFLYGQGKNGKSVLLDVMVKLLGDYADAAPP 271 Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594 + + L L G RI++ SE D + A++K +TGGD + AR Sbjct: 272 GFLMARPFE----GHPTDLAELHGRRIIVCSELKPGDRFDEARVKLLTGGDRIKARRM-R 326 Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDA--SFAQKLETKYT 652 + + +++ N V A+WRR ++PF++ + + + A L T+ Sbjct: 327 QDFFSFGPTHKLWLLGNHRPEVGTGGYAFWRRMKLLPFERVVDDDRKVDNLADVLVTEEG 386 Query: 653 LEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESH 712 W ++G + Y++ D+ PE A + D ++ +CC +G ++ E Sbjct: 387 PGILNWLVEGSRRYLTGPRDLTGPERVRTATTAYAETEDHTGRFLSECCTVGPSMRAEQT 446 Query: 713 SLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLK 772 L SY ++ + E ++R ++ GI K ++ G+ L Sbjct: 447 LLYASYRDWCQLEGA---NPATSRAFAARVRD---TVGISSPKEMILSNQRKFYPGIGLN 500 Query: 773 PA 774 Sbjct: 501 AE 502 >gi|134297351|ref|YP_001121086.1| hypothetical protein Bcep1808_3261 [Burkholderia vietnamiensis G4] gi|134140508|gb|ABO56251.1| phage/plasmid primase, P4 family [Burkholderia vietnamiensis G4] Length = 775 Score = 319 bits (816), Expect = 2e-84, Method: Composition-based stats. Identities = 84/443 (18%), Positives = 156/443 (35%), Gaps = 37/443 (8%) Query: 334 YKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR 393 Y W+ + ++ + + E ++ Sbjct: 355 YVALWGKWVFWTGKRWQ-----TEETLAAHHLMRQICREAA----------LKADSHRVA 399 Query: 394 QNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYIT 453 + + + + + T+D D+ L G+++L+ G + +T Sbjct: 400 AKLASSGTVAGLERLARSDRRHAATADEWDADPWLLNTPGGVVNLKNGVLRSHDRLDRLT 459 Query: 454 KSTGTPFVEGEPSQEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGS 512 K T + + + + Y R G AL G + + G G + Sbjct: 460 KITTA--TPAGDCPTWRQFIHEVTGGDQALQAYLARMAGYALTGSTREHALFFLYGTGAN 517 Query: 513 GKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDE 572 GKS +N + G+ + + + + L G+R V ET + Sbjct: 518 GKSVFVNTLATILGDYATNAPMDTFMETR----TDRHPTDMASLRGARFVAAIETEQGRR 573 Query: 573 INAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF 632 +K+K +TGGD ++AR + E F + N +RN D+A RR +IPF Sbjct: 574 WAESKVKSLTGGDKISARFM-RQDFFEFMPQFKLIVAGNHKPAIRNIDEAMKRRLHLIPF 632 Query: 633 DKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGT 690 + RD QKL W ++G + +G +D P+ L A +E + Sbjct: 633 TITVPPERRDKHLQQKL-LAERDGILAWAVQGCLEWQRQG-RLDPPQQVLDATDEYFEEE 690 Query: 691 DTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGG 750 D ++D+ C E ++ + + E E+ Y ++R +T L +GF Sbjct: 691 DAIGEFLDEDCQQSPVAREAISAIYQRWRERAERRGEY---VGTSRWLTQQLINRGF--- 744 Query: 751 IKREKIEKEWKSKRIIKGLKLKP 773 R ++ K+ + GL LKP Sbjct: 745 -ARTRLHGGAKA---LSGLSLKP 763 >gi|239904738|ref|YP_002951476.1| hypothetical protein DMR_00990 [Desulfovibrio magneticus RS-1] gi|239794601|dbj|BAH73590.1| hypothetical protein [Desulfovibrio magneticus RS-1] Length = 606 Score = 318 bits (815), Expect = 2e-84, Method: Composition-based stats. Identities = 103/479 (21%), Positives = 184/479 (38%), Gaps = 27/479 (5%) Query: 300 KGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAW--YKKDKNNVYIWSLTLDKITASIMN 357 + + A +D N F F+Y ++ W + DK L + +M Sbjct: 121 RPIFAYPLTDLGNAQKFYRVYNKFFMYDHESAQWVGWDNDKKRWLTGRLARQLMMRFVMK 180 Query: 358 FLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSI 417 + + L N + + +NS+ K+ + + + Sbjct: 181 LVDELYRQAKSLRPLRTRNGEEVTPEE----ALAWAKATSQNSRKKAVLEMVRDLPKVRV 236 Query: 418 TSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY- 476 LDS LG +G+LDL TG ++ EL IT+ + + F + Sbjct: 237 AKAELDSDPYLLGVANGVLDLRTGTLIENRPELRITRYASAAYRPDAEAPIFQGFMRQIC 296 Query: 477 FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEAS 536 ++++D+ G AL G K F + G G +GKSTL+ + Y G + + Sbjct: 297 LGRQDLVDFLQEVFGYALSGLIKEHAFFILVGTGANGKSTLVEIFLYLLGEYGIGMPGHA 356 Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNT 596 + N + + R G R+ I+E N+ + + +K+ GD MTAR G Sbjct: 357 FLKSN----SRAIRNDIARWPGIRLGTIAEANDGMSFDESLLKRSVAGDVMTARFI-GKE 411 Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI-ANRDASFAQKLETKYTLEA 655 Y + F+ N + D+ +RR +VIPFD A D +KL Sbjct: 412 YFDFHPVAKFFLSVNTLPKITGADNGIYRRLVVIPFDGDFQATMDRDLPEKL-KAEIDGI 470 Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLA 715 W ++G + ++G + P+ ++A + R DT Q+++D+CC + N+ L Sbjct: 471 LAWAVQGFLRWQARG-HLVKPDCVVEACKAYRAEMDTVQSFLDECCILDPNVSTPLGVLY 529 Query: 716 KSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPA 774 ++Y + + + + QKGF ++ W+ KG+ LK A Sbjct: 530 EAYKNWAK---GAVVDPANLHLFGTLMGQKGF-----KKVKSGTWR----WKGVALKAA 576 >gi|299067595|emb|CBJ38799.1| putative DNA primase, phage/plasmid [Ralstonia solanacearum CMR15] Length = 765 Score = 318 bits (814), Expect = 3e-84, Method: Composition-based stats. Identities = 97/469 (20%), Positives = 166/469 (35%), Gaps = 45/469 (9%) Query: 308 SDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVF 367 ++ F+ + Y + W +W+ + V Sbjct: 327 TEDGLATAFTRRYGDDWRYCS---LW-----GKWLVWTGVRWNPDQLLY---------VT 369 Query: 368 DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSR 427 LS ++ F +T ++ + +S S + + + T+D D+ Sbjct: 370 HLSRGIC------RAASFKADTPRQKAKLASSSTIASVEKISRSDPKHAATADEWDADVW 423 Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE-SEEVMDYF 486 L G++DL TGQ +E +TK T G + ++ E+ Y Sbjct: 424 ALNTPGGVVDLRTGQLRAHRREDRMTKITTA--TPGGDCPTWRQFLAEVTGGDAELQAYL 481 Query: 487 TRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEA 546 R G AL G + + G G +GKS +N + G+ V A + + A Sbjct: 482 QRMAGYALTGSTQEHALFFLYGTGANGKSVFVNTLATILGDYAVNAAMDTFMETR----A 537 Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 + + L G+R V ET + +K+K +TGGD ++AR + E F Sbjct: 538 DRHPTDMAGLRGARFVAAIETEQGRRWAESKVKNLTGGDKISARFM-RQDFFEFFPQFKL 596 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVK 664 F+ N +RN D+A RR +IPF + RD QKL W ++G Sbjct: 597 FVAGNHKPAIRNIDEAMKRRLHLIPFTITVPPERRDKHLQQKL-LAERGGILAWAVQGCL 655 Query: 665 AYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQ 724 + G + P+ L A EE + D W+D+ C N + L + ++ E Sbjct: 656 DWQRLG-RLQPPQQVLDATEEYFEAEDALGRWLDERCVREANAKTLTAELFNDWKQWAEA 714 Query: 725 ELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773 + S + L +G + R +G+ LK Sbjct: 715 AGEFA---GSQKRFADLLLIRGVEK-------WRNTAGLRGFRGVGLKH 753 >gi|302538856|ref|ZP_07291198.1| conserved hypothetical protein [Streptomyces sp. C] gi|302447751|gb|EFL19567.1| conserved hypothetical protein [Streptomyces sp. C] Length = 548 Score = 317 bits (812), Expect = 4e-84, Method: Composition-based stats. Identities = 93/479 (19%), Positives = 179/479 (37%), Gaps = 38/479 (7%) Query: 306 RFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKED 365 +D N +F+ F + + Y+W K T K Sbjct: 89 NLTDRGNAKLFAHLHNHRFRHV---------EGLGWYVWDEYRWKRTGGE-------KAA 132 Query: 366 VFDLSEEPEDNNKNSKSPRFWFNTDYR-RQNVEENSKAKSTAQSLEAGSIFSITSDLLDS 424 ++ + E+ + F + R+ S K+ +A ++ D LD Sbjct: 133 IWAAGDMAEEMPLHDPRGHFTDRELAQHRKRAMSTSGVKAMLSQAKASPELALDPDTLDG 192 Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFES----E 480 L G++DL TG+ KP + E P+ F ++ F + Sbjct: 193 DKYALCTPAGVVDLRTGELRKPDPLRDLHSRATYLAPEASPTPRFARFLTETFGDDDKGK 252 Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540 E++ + +G ++ G Q + G+G +GKS LM+++ G+ + + + Sbjct: 253 EMITFVHLLLGYSITGDVGGQVLPFLYGIGANGKSALMDIVIKILGDYADVAPPGFLMER 312 Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600 + + + L L G R+ + SE +D+ + A++K +TGGD + AR Y Sbjct: 313 GKF---NEHSTELTELHGRRLFVCSELKPHDKFDEARVKLLTGGDRLKARRM-RQDYFSF 368 Query: 601 PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDA--SFAQKLETKYTLEAKKW 658 + +++ N V A+WRR +IPFDK + + + A++L W Sbjct: 369 EPTHKLWLLGNHRPEVGTGGHAFWRRIRLIPFDKVVPDHRKIDNLAEELVNHEGPGILHW 428 Query: 659 FLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE------NLWEESH 712 ++G AY+ + P V A + D ++ +CC G+ + E Sbjct: 429 MIQGAMAYLRTKPSLTGPTVVRTATQAYATTEDHIGRFLAECCTSGDGGEEPRDFKVEQG 488 Query: 713 SLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771 +L ++YS + ++ + +TR ++ GI ++ GL L Sbjct: 489 ALYRAYSTWCQE--GEGLRPATTRAFATRIRA---EVGISSPGEMLRSNGQKFYPGLAL 542 >gi|152981706|ref|YP_001354386.1| hypothetical protein mma_2696 [Janthinobacterium sp. Marseille] gi|151281783|gb|ABR90193.1| bacteriophage-related protein [Janthinobacterium sp. Marseille] Length = 758 Score = 317 bits (812), Expect = 5e-84, Method: Composition-based stats. Identities = 90/472 (19%), Positives = 168/472 (35%), Gaps = 50/472 (10%) Query: 308 SDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVF 367 ++ F+ + Y A W +W+ + ++ + Sbjct: 321 TEDGLSTAFTRRYGQDWRYCA---LW-----GKWLVWTGVRWN-----ADQMLYVSHLAR 367 Query: 368 DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSR 427 + + + ++ + +S + + + + +++ D+ + Sbjct: 368 GICRNASLKAE----------SPRQKAKLASSSTISAVEKIARSDPKHASSAEEWDADTW 417 Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE-SEEVMDYF 486 L G++DL TG+ + ++ +TK + + ++ +++ Y Sbjct: 418 ALNTPGGVVDLRTGRMREHRRDDRMTKVSTA--TPKGDCPTWHGFLADVTGGDADLIAYL 475 Query: 487 TRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEA 546 VG L G + G G +GKS +N+I G+ + + Sbjct: 476 QLMVGYCLTGITSEHALFFLYGTGANGKSVFVNVITTILGDYAANAPMDTFMD----ARN 531 Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 + L L G+R V ET + N +K+K +TGGD ++AR + E F Sbjct: 532 DRHPTDLAGLRGARFVSSIETEQGRRWNESKVKAITGGDKVSARFM-RQDFFEYVPQFKL 590 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVK 664 I N +RN D+A RR +IPF I RD KL K W ++G Sbjct: 591 VIAGNHKPSIRNVDEAMKRRLHLIPFTVTIPPEKRDGRLTDKL-LKERDGILAWAVEGCS 649 Query: 665 AYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQ 724 + +GL P + A EE + D WI++ C + + E L + E+ E+ Sbjct: 650 RWQQQGLKP--PASVVSATEEYFEAEDALGQWIEERCLLAKTSREGVSDLFSDWREWAER 707 Query: 725 ELNY--DRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPA 774 + KR S T ++ GG+ R + GL L+P Sbjct: 708 AGEFVGSVKRFSELMATRKFEKCRLTGGV------------RGLTGLSLRPK 747 >gi|48697531|ref|YP_024889.1| gp49 [Burkholderia phage BcepB1A] gi|47717501|gb|AAT37747.1| gp49 [Burkholderia phage BcepB1A] Length = 919 Score = 317 bits (811), Expect = 6e-84, Method: Composition-based stats. Identities = 102/504 (20%), Positives = 195/504 (38%), Gaps = 33/504 (6%) Query: 288 TSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLT 347 ++ ++ N + +Y ++ + WY+ W Sbjct: 439 RAMLSAASSQPLTPGAHRECTEFGNVSRLMDKYGDTLMYVSEIEQWYQ--------WDGM 490 Query: 348 LDKITASIMNFLVSMK-EDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTA 406 A+ L + + ++ +++E D R ++ ++ + K+ Sbjct: 491 RW--NAATPEQLQFLATQTIYSIAQEARDEENEEVRVRL----AQWARDSQKTAMVKNIV 544 Query: 407 QSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPS 466 A + LD+ R++G + I+DL+TG + P + IT+ T + + Sbjct: 545 IGARAEPRVFARAANLDADVRYIGAPNCIIDLQTGAALAPDRNARITQYTAVQYNPAADA 604 Query: 467 QEFLDLVSG-YFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF 525 F + +F++ E++ +F R +G ALLG K + G G +GKST+MN I+ Sbjct: 605 PCFKQTIREAFFDNIELIVFFKRLMGYALLGNPKQSWLVIPYGHGANGKSTIMNAIQRVL 664 Query: 526 GNQYVINAEASDIMQNRPPEA--GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTG 583 G+ + + + G L+RL +R+++ISE EN + A +K +TG Sbjct: 665 GDYCRTASSDTFTSSEASRSSSAGGPREDLVRLRSTRMLLISEVEENSHLREAIVKSLTG 724 Query: 584 GDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASF 643 D + AR E F P + N ++ D+ WRR ++IPF++ D + Sbjct: 725 DDTIVARGVQAKASVEYKPRFVPIMSTNHKPVIKGSDNGIWRRIMMIPFERNFRE-DPNI 783 Query: 644 AQKLETKYTL-----EAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID 698 + ++ + +W ++G Y G V +P + +A +E R+ D WI+ Sbjct: 784 PEDVDRPEKIAAESEGVLRWLVEGAVEYQQFG--VTVPHIIREATDEYRKDMDLLSGWIE 841 Query: 699 DCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLK-QKGFIGGIKREKIE 757 + + + L S+ Y R + + L +KGF Sbjct: 842 SRLEFDPDAFVTPQDLFTSWQSYATPIGLM-RFVSTPVALGRKLAGRKGFKRAQ-----N 895 Query: 758 KEWKSKRIIKGLKLKPAFESVDDN 781 R G++LK A E V + Sbjct: 896 IGGMRGRCFVGVRLKTAAEVVFNG 919 >gi|273810442|ref|YP_003344913.1| P4 family phage/plasmid primase [Xylella phage Xfas53] gi|257097817|gb|ACV41123.1| P4 family phage/plasmid primase [Xylella phage Xfas53] Length = 845 Score = 316 bits (810), Expect = 7e-84, Method: Composition-based stats. Identities = 102/496 (20%), Positives = 179/496 (36%), Gaps = 51/496 (10%) Query: 308 SDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITA-SIMNFLVSMKEDV 366 +DA N + + N +W+ + + + + Sbjct: 370 TDAANAGRIAKRHGKQLM----------WTGNRWLVWNDRYWESDPVGAHALMADLPALI 419 Query: 367 FDLSEE----PEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLL 422 +E+ D E A T + L + + L Sbjct: 420 RAEAEQWRLKATDTEDGKAKNEKIAAALDAWSKKSEMGSAIETLERLLKKR-LRVPQEQL 478 Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF----- 477 D++ L +G +DL TG E YIT+ F + EF+ ++ Sbjct: 479 DTNPWLLNCANGTVDLRTGTLKAHRPEDYITRVVPINFDPKATAPEFITTLARITCEYGE 538 Query: 478 ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537 S+ + + R G G + Q+F + G G +GKSTL++LI G + A Sbjct: 539 SSKPLCAFLQRWFGYCATGEVREQKFAVLYGDGNNGKSTLLDLITGILGRYSGVAAPG-L 597 Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597 + P+ A + L G R+V E+ E + + +KQ TGGD + AR YG + Sbjct: 598 LTGKNGPQHPNA---IADLAGRRMVTTHESGEGEVLREDFVKQATGGDTLKARYLYGE-F 653 Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN------------RDASFAQ 645 E + ++ N ++ D WRR ++IPF RD A+ Sbjct: 654 FEFKPTHKLQLLTNHKPVIKGQDSGIWRRIMLIPFKAKFDAAEGEEIGNGKYLRDMRIAE 713 Query: 646 KLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE 705 KL T W + G + GL P++ L A E+ ++ D +ID+ C++G Sbjct: 714 KLAT-EREGVLAWIVAGAVEWYKNGLRP--PDIVLAASEDYKEEQDRVGQFIDEECELGA 770 Query: 706 NLWEESHS-----LAKSYSEYREQELNYDRKRISTRTVTLNLKQK--GFIGGIKREKIEK 758 + E+ + L +Y+++ + +S LK++ GF +E Sbjct: 771 DKEEKLSTPMGGGLYPAYTQWCKASG---VCALSKTRFLDGLKRRVPGFKKKYVDRIVEG 827 Query: 759 EWKSKRIIKGLKLKPA 774 + +I G+ L A Sbjct: 828 KRHKFTVIIGVALVNA 843 >gi|71900480|ref|ZP_00682610.1| Phage/plasmid primase P4, C-terminal [Xylella fastidiosa Ann-1] gi|71729720|gb|EAO31821.1| Phage/plasmid primase P4, C-terminal [Xylella fastidiosa Ann-1] Length = 845 Score = 315 bits (807), Expect = 2e-83, Method: Composition-based stats. Identities = 101/496 (20%), Positives = 176/496 (35%), Gaps = 51/496 (10%) Query: 308 SDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITA-SIMNFLVSMKEDV 366 +DA N + + N +W+ + + + + Sbjct: 370 TDAANAGRIAKRHGKQLM----------WTGNRWLVWNDRYWESDPVGAHALMADLPALI 419 Query: 367 FDLSEE----PEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLL 422 +E+ D E A T + L + + L Sbjct: 420 RAEAEQWRLKATDTEDGKAKNEKIAAALDAWSKKSEMGSAIETLERLLKKR-LRVPQEQL 478 Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF----- 477 D++ L +G +DL TG E YIT+ F + EF+ ++ Sbjct: 479 DTNPWLLNCANGTVDLRTGTLKAHRPEDYITRVVPINFDPKATAPEFITTLARITCEYGE 538 Query: 478 ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537 S+ + + R G G + Q+F + G G +GKSTL++LI G + A Sbjct: 539 SSKPLCAFLQRWFGYCATGEVREQKFAVLYGDGNNGKSTLLDLITGILGRYSGVAAPG-L 597 Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597 + P+ A + L G R+V E+ E + + +KQ TGGD + AR YG + Sbjct: 598 LTGKNGPQHPNA---IADLAGRRMVTTHESGEGEVLREDFVKQATGGDTLKARYLYGE-F 653 Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA------------NRDASFAQ 645 E + ++ N ++ D WRR ++IPF RD A+ Sbjct: 654 FEFKPTHKLQLLTNHKPVIKGQDSGIWRRIMLIPFKAKFDAAEGEEIGNGKYPRDMRIAE 713 Query: 646 KLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE 705 KL W + G + GL P++ L A E+ ++ D +ID+ C+ G Sbjct: 714 KL-AAEREGVLAWIVAGAVEWYKNGLRP--PDIVLAASEDYKEEQDRVGQFIDEECETGV 770 Query: 706 NLWEESHS-----LAKSYSEYREQELNYDRKRISTRTVTLNLKQK--GFIGGIKREKIEK 758 E+ + L +Y+++ + +S LK++ GF +E Sbjct: 771 EKEEKLSTPMGGGLYPAYTQWCKASG---VCALSKVRFLDGLKRRVPGFKKKYVDRIVEG 827 Query: 759 EWKSKRIIKGLKLKPA 774 + +I G+ L A Sbjct: 828 KRHKFTVIIGVSLVNA 843 >gi|227498327|ref|ZP_03928477.1| prophage protein [Acidaminococcus sp. D21] gi|226903789|gb|EEH89707.1| prophage protein [Acidaminococcus sp. D21] Length = 747 Score = 315 bits (806), Expect = 2e-83, Method: Composition-based stats. Identities = 118/677 (17%), Positives = 220/677 (32%), Gaps = 62/677 (9%) Query: 136 VAYNIHPKTKKEYTWTTPPHRFKVE---DTPLLSEEDVEYLFKFFQEITVPLVKDKKSII 192 VA I P R + + P +++E K P + Sbjct: 88 VAMAIVPSRNHMKPKDGKCARPRFHVYFEIPEITDEPCYTELKRAVYHAYPFFDEAALDA 147 Query: 193 PSKTW------TNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIP--VVMAVHHETRGSS 244 + N + T ++ G + + + Sbjct: 148 ARFIYGCPAEKVLWQNGKMTIDQVLKAREAGIHSIPQGQRNNTMSRFAGRVIKRYGATER 207 Query: 245 KGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKG-LL 303 K + N W + G+ ++ + S ++ +G L Sbjct: 208 AYSIFLEEAEKCDPPLADAELNKIWQS--AVRFGEKIARQDGYISPDQYNNDFARQGSLK 265 Query: 304 ASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYI--------WSLTLDKITASI 355 +SD + YT +T + + + L+ A Sbjct: 266 PEDYSDIGQAKVLKREYGDELRYTENTD-FLRYNGIYWAESHQEAIGAAEEFLELQLADA 324 Query: 356 MNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENS--------------- 400 + + + ++ + ++ E +K + ++ + Sbjct: 325 RDQMEAGRKALQEMGVAAELIDKGGRMLEKVIEGSQQKAFQSYQAALAYYAFVMKRRDMR 384 Query: 401 KAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQ--KVKPTKELYITKSTGT 458 S Q+L+ + I LD+ L DL G + E YITK T Sbjct: 385 YIISALQALKPMLLIPI--QALDADEFLLNTPSFTYDLRQGMAGRRNHRPEDYITKCTAV 442 Query: 459 PFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTL 517 E + + + +F +E++DY G+ +G + + G G +GKST Sbjct: 443 DPGEEGET-VWQQALDEFFTGDQELIDYAQEICGLMAIGKVYVEALVIAYGDGRNGKSTY 501 Query: 518 MNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK 577 N I G+ + + + P + L G R+VI +E E ++ + Sbjct: 502 WNSIARVLGSYCGGISADALTANCKR----NIKPEMAELKGKRMVIAAEMEEGVRLSTSV 557 Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637 +KQ+ D + Y + + T + N V D+ WRR IVIPF Sbjct: 558 LKQLCSTDEVGGEKKYKTPF-TFVPTHTLVLYTNHLPRVGASDEGTWRRLIVIPFKAQFE 616 Query: 638 N--RDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQA 695 ++A L +W ++G + I+ + +P+ A +E R D + Sbjct: 617 GHGEIKNYADYLVEAAGPAILRWIIEGAEKVIASEYHLTMPKCVRDAIQEYRGQNDWLRH 676 Query: 696 WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755 +++DCCD+ + E+S +L +Y Y +Q Y R ST L++ GF Sbjct: 677 FLEDCCDVDPSCQEKSGALYTAYRLYCQQMNEYTR---STTDFYGALEKAGF-------- 725 Query: 756 IEKEWKSKRIIKGLKLK 772 ++ K+ I GLKLK Sbjct: 726 DRRKRKAGYFIYGLKLK 742 >gi|24575081|gb|AAL06652.1| putative primase [Streptomyces globisporus] Length = 509 Score = 314 bits (805), Expect = 3e-83, Method: Composition-based stats. Identities = 86/488 (17%), Positives = 172/488 (35%), Gaps = 35/488 (7%) Query: 294 HGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITA 353 G + + +D N +F + F + + Y W K Sbjct: 43 AATAWEAGEIPASLTDRGNAKLFVRLYRDQFRHV---------EGLGWYSWDGYRWKRAG 93 Query: 354 SIMNFLVSMKEDVFDLS-EEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAG 412 L + E ++ +P + + + ++ + K+ +A Sbjct: 94 GEKAALWAAGEMAEEMPGSDPRGLFTDREL-------HHHKRRTLSTTGMKALLTQAKAS 146 Query: 413 SIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDL 472 S+ D LD L DG++DL G+ KP + + P+ + Sbjct: 147 PDLSLDPDTLDGDPYALCTPDGVVDLRNGRMRKPDPTRDFHSRATSASPQDIPTPRWHRF 206 Query: 473 VSGYFESE----EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 + F S+ E++D+ +G ++ G AQ + G G +GKS L++++ G+ Sbjct: 207 LEDTFGSDAEGREMIDFLHLLLGYSITGDVGAQVLPFLHGQGKNGKSVLLDVMIQILGDY 266 Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588 + + + + L L G R+++ SE ND + A+++ +TGGD + Sbjct: 267 ADAAPPGFLMDRG---AYSEHSTELTELHGRRLIVCSELKPNDRFDEARVRLLTGGDKIK 323 Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDA--SFAQK 646 AR Y + +++ N V A+WRR ++PF++ + + + A + Sbjct: 324 ARRM-RQDYFSFTPTHKLWLLGNHRPEVSTGGFAFWRRIRLLPFERIVPDERKIDNLAVE 382 Query: 647 LETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE- 705 L W +G + Y++ + P+ A D ++ +CC Sbjct: 383 LVQDEGPGILHWLTEGARRYLATRDTLAGPDRVRIATSAYANTEDHIGRFLAECCLHDPE 442 Query: 706 --NLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSK 763 L E L SYS + + + R ++Q G+ + + Sbjct: 443 NSELRVEQGLLYTSYSTWCAHS--EGIRPGTARAFATRVRQ---EVGLASPADMIKSNGR 497 Query: 764 RIIKGLKL 771 + L L Sbjct: 498 KFYPNLAL 505 >gi|51870034|ref|YP_073585.1| predicted ATPase [Lymphocystis disease virus - isolate China] gi|51858242|gb|AAU10926.1| predicted ATPase [Lymphocystis disease virus - isolate China] Length = 865 Score = 314 bits (805), Expect = 3e-83, Method: Composition-based stats. Identities = 112/650 (17%), Positives = 201/650 (30%), Gaps = 80/650 (12%) Query: 162 TPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEF 221 ++ ++ YL F + K + T +L E Sbjct: 218 LTIMPQDKEPYLISFKNVKPKLIDKILSRKA------EAILNEETRPSKLKYLINLLPEE 271 Query: 222 YNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTA 281 D W+ V T GS +G ++ +SK+ Y+E+ W Sbjct: 272 CADDRDVWLETGFCVWQITDGSIEGYDVWTSFSKKSEKYNEDECFDLW-------YRQMR 324 Query: 282 KKRSTFTSLFYHHGKLIPKGLLAS-------------RFSDAY-NKAMFSIYKKGHFLYT 327 T SL++ K +G S K + + + Sbjct: 325 PNDFTIASLYWLIKKYNSEGFADYVRLYECPPSKYYTDGSHVGVAKIVHHHFGSEFKCVS 384 Query: 328 ADTKAWYKKDKNNVYIWS---LTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKS-- 382 WY+ D I+ S L ++ + + + + + K Sbjct: 385 IKNHVWYRYDGVTWAECHVGVDLRRLISDSKAPILQTLDRQIKIVDDCLKGEETDEKYYQ 444 Query: 383 -------------PRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFL 429 + ++++ S + E + + +DS + Sbjct: 445 WQEELAQLTLEELEKLMDRLFKIKKSLRMTQFKNSVMRECEELFYDPLFAQKIDSDPYLI 504 Query: 430 GEQDGILDLETGQKVKPTKELYITKSTGTPFVEG---------------EPSQEFLDLVS 474 ++G+ D + E Y K ++ +E L Sbjct: 505 AFKNGVFDFKQKTFRAGRPEDYCCKKLNVNYINYGFSGPLSCDPADFNGPELKETLIFFQ 564 Query: 475 GYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534 F E+ +F R + A +GGN + + G G +GK+ LI+ FG V + Sbjct: 565 QVFPDVELRTFFIRQLASAFIGGNLEKICLFWTGSGNNGKTITQTLIEKMFGVFAVKLST 624 Query: 535 ASDIMQNRPPEAGKANPSLIRL-MGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593 + + G+ANP L R G R V++ E + ++ INA +K +TG D AR Y Sbjct: 625 SVLTGKK--LSTGQANPELARTGGGVRWVVMEEPDNDERINAGILKNLTGNDTFWARDLY 682 Query: 594 --GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN------------R 639 G E F ++ N ++ D A W R VIPF+ + Sbjct: 683 CAGKDTKEIIPMFKLHVICNNLPEIKYADQAVWNRVRVIPFESVFKPVEECPETYEERLK 742 Query: 640 DASFAQKLETKYTLEAKKWFLKGVKAYI---SKGLDVDIPEVCLKAKEEERQGTDTYQAW 696 +F ++ L L Y L+ + P LKA +E R D Y+ + Sbjct: 743 AKTFLVDVKFNEKLCKMTEPLAYYLIYYWLNMDRLNYNAPNKVLKATKEYRNENDLYKQF 802 Query: 697 IDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746 +D+ L Y E+ + Y + + ++ G Sbjct: 803 VDNNLITESGTILSDRLLYIKYKEWLNETHPYYIVPSRNKAIKKFVEVLG 852 >gi|85716953|ref|ZP_01047917.1| hypothetical protein NB311A_09386 [Nitrobacter sp. Nb-311A] gi|85696232|gb|EAQ34126.1| hypothetical protein NB311A_09386 [Nitrobacter sp. Nb-311A] Length = 460 Score = 314 bits (805), Expect = 3e-83, Method: Composition-based stats. Identities = 99/478 (20%), Positives = 182/478 (38%), Gaps = 48/478 (10%) Query: 308 SDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVF 367 ++ F Y + +W+ +W+ + + F + Sbjct: 24 TEDSAALRFVEQHGADLRYCHSSGSWF--------VWNGLRWQRDLTGAVF-EKARLLAR 74 Query: 368 DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSR 427 L E+ R+ + + S A + + ++++D D Sbjct: 75 ALGED---------------QDARGRKTIGKTSFAGGIERFARNDRVTAVSADYWDRDLW 119 Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE-SEEVMDYF 486 LG G +DL TG P + ITKST +E +L ++ + + ++ + Sbjct: 120 LLGTPGGTVDLRTGVLRNPIRSDGITKSTFCAPLEDG-CPRWLRFLAETTDKDQGLVRFL 178 Query: 487 TRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEA 546 + G L G + + G GG+GKS +N++ +A + + Sbjct: 179 QQWCGYCLTGVTNQHALVFVYGPGGNGKSVFLNVVTAIMAEYATTSAMDTFTA----SQN 234 Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 + + L L G+R+V SET E A+IK +TGGD +TAR + + F Sbjct: 235 DRHSTELAMLNGARLVTASETEEGRAWAEARIKALTGGDKITARFMRQDNF-TFTPQFKL 293 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 +V N + N DDA RR+ ++PF D +KL +W + G + Sbjct: 294 IVVGNHKPVLHNVDDAARRRFNIVPFMLKPEQPDHELERKL-MAEAGGILRWMIDGCLDW 352 Query: 667 ISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGEN-----LWEESHSLAKSYSEY 721 GL PE A E D + W++DCC++ + +W+ S L +S+SEY Sbjct: 353 QRAGL--IRPESVKAATEAYFSDQDLFGQWLEDCCEVRIDRGPHFIWDRSADLFESWSEY 410 Query: 722 REQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVD 779 + + S ++ ++++GF E + R + ++L+ A + D Sbjct: 411 SHKAGE---EPGSKKSFGQLMQRRGF------EPYRQPGPGTRGFRFVRLRLAMKEND 459 >gi|293401137|ref|ZP_06645281.1| putative phage/plasmid DNA primase [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291305263|gb|EFE46508.1| putative phage/plasmid DNA primase [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 757 Score = 314 bits (804), Expect = 4e-83, Method: Composition-based stats. Identities = 110/641 (17%), Positives = 215/641 (33%), Gaps = 53/641 (8%) Query: 166 SEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGS 225 ++ F F + + + + + + + + G S Sbjct: 141 TQALDAARFFFGTAAADVALYPGRMNLTEFLDEDLFDEDMEDGQYDGSIIPEGSRNATMS 200 Query: 226 HDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRS 285 + G + +K D + W + + ++ Sbjct: 201 RF----AGRVIKKYGDGDKAYQAFLEEVAKCVPPLDNSELSTIWHS--AQRFFARVAQQD 254 Query: 286 TFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVY--- 342 + + ++ P +SD + + Y Y+ T + + + Sbjct: 255 GYVAPEVYND---PSCYKPEDYSDVGQAEVLAKYFSNELRYSPATH-FIRYSDHYWQESE 310 Query: 343 -----IWSLTLDKITASIMNFLVSMKEDVFD-------------LSEEPEDNNKNSKSPR 384 + + N L+ + + + +E+ + + Sbjct: 311 PGAQAVAHELTRRQMKEANNDLMEALDKMKNCGAQNILDSTSKSKAEQLMNEEQLQVYQE 370 Query: 385 FWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQK- 443 F Y ++ T+ E+ + I+ LD+ L + DL G Sbjct: 371 FLAAKAYLNFAIKRRDSKNVTSTLKESHPMLEISPRDLDADCFALCTPEATYDLRKGIAG 430 Query: 444 -VKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQ 501 + + E +ITK T + +LD ++ F+ ++E++DY G+A +G + Sbjct: 431 AREHSAEDFITKITSVSPSQKG-MPIWLDSLNLIFQHNQELIDYVQMICGLAAIGKVYVE 489 Query: 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRI 561 I G G +GKST N I G + + + R P + + G R+ Sbjct: 490 ALIIAYGDGRNGKSTFWNAISRVLGLYSGNISADTLTVGCRR----NIKPEMAEVKGKRL 545 Query: 562 VIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDD 621 +I +E E +N + +KQ+ D + A Y + +S T + N V DD Sbjct: 546 LIAAEMQEGARLNDSTVKQLCSTDDVFAEKKYKDPFS-FKPCHTLVLYTNHLPRVSASDD 604 Query: 622 AWWRRYIVIPFDKPIANRD--ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVC 679 WRR IVIPF+ I ++++ L W ++G K I + +P Sbjct: 605 GIWRRLIVIPFNAKITGSSDIKNYSEYLYDNAGEAILAWVIEGAKKVIELDYQIPVPACV 664 Query: 680 LKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVT 739 +A E R D + +++D CD+G E S +L ++Y Y Y R ST Sbjct: 665 QEAINEYRSQNDWFSHFLEDKCDVGIEYKESSSALYQAYRNYCMDTNEYVR---STADFY 721 Query: 740 LNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDD 780 L+ G+ KR KGL+++ + ++ Sbjct: 722 FALENAGYE--------RITQNRKRYFKGLRIRTEDDFEEE 754 >gi|304360923|ref|YP_003857043.1| gp71 [Mycobacterium phage CrimD] gi|302858672|gb|ADL71417.1| gp71 [Mycobacterium phage CrimD] Length = 872 Score = 314 bits (804), Expect = 4e-83, Method: Composition-based stats. Identities = 107/633 (16%), Positives = 207/633 (32%), Gaps = 54/633 (8%) Query: 150 WTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNRE 209 W P + ++ + + K + R + E Sbjct: 278 WREEPITERHPWLVKVTVRLMAAVRNKCLTADEYAEARKMIVDKFMAECAATGRDVPSFE 337 Query: 210 ITAFLSCFGEEFY-NGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYK 268 I S + +H R + E+A + + Sbjct: 338 IPNAFSWAEHHVATKTDAELATEFGSHLHLWQRAEPRQIELA----------PMPGLDDR 387 Query: 269 WDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTA 328 T G +++ + + + + P A +D N + Y Sbjct: 388 QQTAGIGVEGVSSEG--SLAPVVDINARRNPVAP-AVTLTDTGNADLLVEAWGAKLRYCP 444 Query: 329 DTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFN 388 DT W W T E + + E + SP+ Sbjct: 445 DTGKW--------LSWKGTRW-------EHGTDQGEAIVAARQVVEAIKLDDDSPKDVIQ 489 Query: 389 TDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTK 448 R + + + A+ + LD+ L G++DL TG + + Sbjct: 490 HRMRSLSRKGLENMVALAKCS---PDMRVRLADLDAEPYELNTPSGVVDLRTGHLLPHSP 546 Query: 449 ELYITKSTGTPFVEGEPSQEFLDLVSGYFESE-EVMDYFTRCVGMALLGGNKAQRFIHIR 507 + + TK TG + + + ++G F + E++ Y R G+A +G + Sbjct: 547 DGWHTKITGAGYNPAAVAPAWQKFLAGTFGDDVELIGYVQRLAGLAAIGKVTHHVLPFLF 606 Query: 508 GVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISET 567 G G +GKS LM+++ G+ + + + + RL G+R+V+ SE Sbjct: 607 GGGSNGKSVLMDVLANVLGDYAITAPANFLLAGR-----DRHETEIARLHGARMVVCSEI 661 Query: 568 NENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627 N + + AK+K +TGGD ++ R Y + S T F++ N V ++WRR Sbjct: 662 NAESKFDEAKVKVLTGGDILSGRYM-RQDYFDFTPSHTLFLMGNHQPQVSAGGTSFWRRL 720 Query: 628 IVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEE 685 ++PF + R+ + A +L W + G + + GL P L A +E Sbjct: 721 RLLPFLHTVPPEQRNPNLAAELIRDEGAAILAWVVAGARQIAADGLR--EPGSVLAATKE 778 Query: 686 ERQGTDTYQAWIDDCCDIGENLW--EESHSLAKSYSEYREQELNYDRKRISTRTVTLNLK 743 + D +I +CC++ + + K+Y + +S + L Sbjct: 779 YSEQEDALGRFISECCELTPGASGGAKPALVLKAYQRWAMSNGEDA--MVSQIKLGRELS 836 Query: 744 QKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFE 776 + +R+ GL L+ +++ Sbjct: 837 AR-------FGVRSVATHGQRVYAGLALQASWD 862 >gi|300933382|ref|ZP_07148638.1| phage-associated protein [Corynebacterium resistens DSM 45100] Length = 755 Score = 314 bits (804), Expect = 4e-83, Method: Composition-based stats. Identities = 109/658 (16%), Positives = 216/658 (32%), Gaps = 65/658 (9%) Query: 163 PLLSEEDVEYLFKFFQEITVPLVK-DKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEF 221 P+ D E +++ D +I + +N + E + + + Sbjct: 117 PITPVADAEAYAGLKKQLASRFEFFDPNAIDAGRFIYGHNGPGISVVEGERTIDAWLADA 176 Query: 222 YNGS-HDEWIPVVMAVHHETRG----------------SSKGKEIARRWSKQG-STYDEE 263 + +W A+ +R S + +++ R + + E Sbjct: 177 VDEDVFAQWDDATQAIEEGSRNATLSRFAGRLLIRLGTSDEARDLFDRKAARCNPPLPEA 236 Query: 264 NFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGH 323 W + T + + + + + + +SD + Sbjct: 237 EVESIWRS--ATRFAKTVENQPGY-VPPEDFEASLDS-VRPADYSDVGQAHALAKAYPDT 292 Query: 324 FLYT-------ADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDN 376 Y+ WY+ + ++ A L K+ + Sbjct: 293 LRYSEATDWLVYYDGVWYESAPAAQAVAQELTERQLAEAHKLLEDAKDQLAATGAAVLLA 352 Query: 377 NKNSKSPRFWFNTDYRRQN-------------VEENSKAKSTAQSLEAGSIFSITSDLLD 423 + + + FN R+ ++ T EA + T + LD Sbjct: 353 SMSKAKAQAMFNAAQRKAFAAFEDAKTYAAYALKRRESRGITNCLKEARPMLLTTPEQLD 412 Query: 424 SSSRFLGEQDGILDLETG--QKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESE 480 + L G DL G + +TK T + + + + + +F Sbjct: 413 ADPYLLNTPSGTYDLRHGAASRRDHDPADLVTKQTSLDPG-TDGAHLWQEALEVFFQGDA 471 Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540 E++ Y R VG+A +G + + G G +GKST N I G + + Sbjct: 472 ELISYVQRIVGLAAIGQVFVEALVIAYGDGRNGKSTFWNTIARVLGTYAGNMSADVLTIG 531 Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600 P L G R++I +E+ E ++ + +KQ+ D + A Y ++ Sbjct: 532 GMR----NVKPELAEAKGKRLIISAESEEGVRMSTSVVKQLASTDQIYAEKKYKAPFA-F 586 Query: 601 PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDASFAQKLETKYTLEAKKW 658 S T + N V D WRR IVIPF+ I ++A L T+ W Sbjct: 587 TPSHTLILYTNHLPRVGAMDAGIWRRLIVIPFEAKIEGTSDIKNYADYLYTQAGGAILAW 646 Query: 659 FLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSY 718 ++G + ++ + P ++A R+ + + ++D CD+ L E + L ++Y Sbjct: 647 IMEGARLIHAENYHLKAPARVVEASAAYREENNWFAQFLDANCDLDPGLSERAGDLYQAY 706 Query: 719 SEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFE 776 + + R + ++ GF + K+ KS + GL+LK F+ Sbjct: 707 RAWAMSTSGWARPMV---DFNATVEHHGF--------VRKKMKSGIRVFGLQLKNEFD 753 >gi|304407256|ref|ZP_07388909.1| phage/plasmid primase, P4 family [Paenibacillus curdlanolyticus YK9] gi|304343697|gb|EFM09538.1| phage/plasmid primase, P4 family [Paenibacillus curdlanolyticus YK9] Length = 808 Score = 314 bits (804), Expect = 4e-83, Method: Composition-based stats. Identities = 107/815 (13%), Positives = 232/815 (28%), Gaps = 99/815 (12%) Query: 11 KQAIHNGFKLIPLRLGD---------------KRPQRLGKWEE-QLLSSEKI----DKLP 50 + I + +IPL D + L +W+ + I K P Sbjct: 12 QDYISRSWPIIPLCPPDHQHVSDKHKDQCRSPGKRPLLREWQHISVPDWASINHWFKKYP 71 Query: 51 ACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHG---TPIVRIGQKPKILIPFR 107 G V G + A D+D + + + + G V + +R Sbjct: 72 TANIGLVLGSPS-GIVAIDVDG------DKGTELLQQMSGGDLPDTVSFSTPNGLRYLYR 124 Query: 108 MNKEGIKKKKTTESTQ-GHLD--ILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPL 164 KK H + ++G G V + K Y W P ++ + P Sbjct: 125 APAGITLKKHKRSDPSLPHNECALMGEGNLTVLPPSIHHSGKTYEWIKHPKDVEIAEAPS 184 Query: 165 LSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNG 224 + + + ++ ++ G Sbjct: 185 WMVSLMTPSLSAAHSMQNRTSLVLPKASVDPDLLLADFAAKCSQFSADWIQQQGSGIAED 244 Query: 225 SHDEWIPV-------VMAV-------HHETRGSSKGKEIARRWSKQGSTYDEENFNYKWD 270 + +WI A+ H ++ + + SK + + + Sbjct: 245 AWFDWIRTLTNAGAPDAALAFSQASPKHNQASETRIHNLVQEGSKSMTRCSTFGCSEQQI 304 Query: 271 TFDFEEIGDTAKKRST------FTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHF 324 + F +I + R L P + D + Sbjct: 305 SQCFHKINRDEQGRVKNSPGGLVRGLLNPTEARKPNLQTIGFYIDPKKGTPKGLNSNAFV 364 Query: 325 LYTADTKAWYKK-DKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSP 383 Y + K Y ++ + K ++E + + + S+ Sbjct: 365 RYVVKDRLTIKFCAPERFYSFAKGIWKYMDEN-ELARLLREILHEFVPDFWTTRLESEYL 423 Query: 384 RFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQK 443 R + +D+ +L ++G+L+L T + Sbjct: 424 AAIAREAPR--------------------------VEKMDAERNYLNLENGMLNLSTLEL 457 Query: 444 VKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQR 502 E T + EFL+ +S F EE++D G L +A + Sbjct: 458 EPHRPEALSTVRVPIWYDMNAECPEFLEFLSVIFDGDEELIDLVAEIFGYCLTTETRAHK 517 Query: 503 FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIV 562 G G +GKS L+ ++K G + + ++ + S L+ + Sbjct: 518 AFIFYGKGSNGKSVLIEMLKCLIGKANISSLTLGELDK---------PFSRYGLVDKLLN 568 Query: 563 IISETN-ENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDD 621 + +E + ++ K + G+ + + +S N + ++ Sbjct: 569 VATENEVSSSALDTTYFKAIVSGEEIQVEKKHEQGFS-YAPYCKLVFALNNLPYSKDKSF 627 Query: 622 AWWRRYIVIPFDKPIANRDAS-FAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCL 680 + RR I++PF+K A F Q K + LKG+ + Sbjct: 628 GFRRRLIIVPFNKTFEEGKADVFLQDKLKKELPGILNFALKGLVRLRKNRYKFSSSKAVD 687 Query: 681 KAKEEERQGTDTYQAWIDDCCD-IGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVT 739 +A + + Q ++ + + + + ++ ++ ++ + + S ++ Sbjct: 688 EALQAYTDTLNPVQRFVREKLSAADSSCRIRYNKIMSAFDDWADKNGHQNNY--SQAKLS 745 Query: 740 LNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPA 774 +K GI E + R ++G+ L Sbjct: 746 DLIKDCLKAQGITFETFKSGG--LRGLQGISLVSD 778 >gi|269974625|gb|ACZ55146.1| putative DNA primase/helicase [Streptomyces sp. 36R-2-1B] Length = 511 Score = 314 bits (803), Expect = 5e-83, Method: Composition-based stats. Identities = 94/525 (17%), Positives = 184/525 (35%), Gaps = 36/525 (6%) Query: 258 STYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFS 317 +D + E +++ S P GLL SD N +F Sbjct: 8 PRFDPHTAAQQMLDLQAAEPPALLPAQASPASQNQSAAGRPPAGLLPPHLSDRGNARLFV 67 Query: 318 IYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNN 377 + F + + + W K T K ++ E ED + Sbjct: 68 QLYRDQFRHV---------EGLGWFTWDGYRWKRTGGE-------KAVLWAAGEMAEDLS 111 Query: 378 KNSKSPRFWFNTD-YRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGIL 436 ++ F ++ + K+ +A S+ D LD L G++ Sbjct: 112 ESDPRRVFSDRELTAHKRKTLSTTGQKALLTQAKASPDLSVDPDTLDGDPYALCTPSGVV 171 Query: 437 DLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESE----EVMDYFTRCVGM 492 DL TGQ KP + + + + ++ F ++ E++D+ +G Sbjct: 172 DLHTGQLRKPDPSRDFHSRATSVAPQHMETPRWHRFLADTFGNDAEGREMIDFLHLLLGY 231 Query: 493 ALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS 552 ++ G AQ + G G +GKS L++ + G+ + + + + Sbjct: 232 SITGDVGAQVLPFLHGEGKNGKSVLLDTMIQILGDYADAAPPGFLMDRGAF---SEHSTE 288 Query: 553 LIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612 L L G R+V+ SE ND+ + A+++ +TGGD + AR Y + +++ N Sbjct: 289 LTELHGRRLVVCSELKPNDKFDEARVRLLTGGDKIKARRM-RQDYFSFHPTHHLWLLGNH 347 Query: 613 HLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKG 670 V A+WRR ++PF + + R + A +L +W ++G + Y+S Sbjct: 348 RPEVSTGGFAFWRRIRLVPFTRTVPAERRIDNLAFELVRDEGPGILQWLIEGARHYLSTR 407 Query: 671 LDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIG----ENLWEESHSLAKSYSEYREQEL 726 ++ P+ A D ++ + C +L E L Y+ + Sbjct: 408 DPLEGPDRVRLATSAYATTEDHIGRFLTERCVRDSDSPADLRVEQGLLYAEYTSWC--NA 465 Query: 727 NYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771 + + R ++Q +G + ++ G+ L Sbjct: 466 GEGVRAATARVFATRVRQDLNLGSPA---DMIKSNGRKYYPGIAL 507 >gi|24575142|gb|AAL06713.1| putative primase/helicase-like protein [Streptomyces globisporus] Length = 511 Score = 314 bits (803), Expect = 5e-83, Method: Composition-based stats. Identities = 82/487 (16%), Positives = 168/487 (34%), Gaps = 35/487 (7%) Query: 301 GLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLV 360 GLL +D N +F + + Y W T + Sbjct: 53 GLLPDSLTDRGNAKLFVRLYAQDYRHV---------TGLGWYRWDGTRWQSDEDDT---- 99 Query: 361 SMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYR-RQNVEENSKAKSTAQSLEAGSIFSITS 419 ++ E E + + R+ S + + +++ Sbjct: 100 ----VLWVAGEMAESIAATDPRGVYSDAALRKHRRRALSTSGINALLSQARSAPGMVLSA 155 Query: 420 DLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFES 479 LD+ L G++DL +G+ + + + P+ + ++ F Sbjct: 156 GALDADPYMLCTPAGVVDLRSGKLRAADPDRDFHSRSTSIGPRQMPTPRWDLFLTDTFGD 215 Query: 480 E----EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535 + E++ + +G +L G AQ + G G +GKS L++++ G+ Sbjct: 216 DARGREMIRFLHLLLGYSLTGDVGAQVMPFLFGSGKNGKSVLLDVLIKLLGDYADAAPPG 275 Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595 + + L L G R+++ SE D + +++K +TGGD + AR Sbjct: 276 FLMARPFE----GHPTDLAELHGRRVIVCSEVKPGDRFDESRVKLLTGGDRIKARRM-RQ 330 Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDA--SFAQKLETKYTL 653 + + +++ N V A+WRR +IPFD+ ++++ + A L T+ Sbjct: 331 DFFSFAPTHKLWLLGNHRPEVGTGGYAFWRRMRLIPFDRVVSDQQKIDNLADILVTEEGP 390 Query: 654 EAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHS 713 W + G Y++ D+ PE A + D ++ + C + E Sbjct: 391 GILNWLITGAHHYLNSPRDLTGPETVRIATTAYAETEDHTGRFLTERCTFQPHHRVEQAR 450 Query: 714 LAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773 L +Y+ + E S+R +++ G+ K ++ G+ L Sbjct: 451 LYHAYTAWSRHEG---INPASSRAFAARIREA---VGLASPKEMLLSNQRKYYPGIGLLA 504 Query: 774 AFESVDD 780 E + Sbjct: 505 VAEEEAE 511 >gi|304360825|ref|YP_003856946.1| gp68 [Mycobacterium phage Angelica] gi|302858409|gb|ADL71157.1| gp68 [Mycobacterium phage Angelica] Length = 872 Score = 314 bits (803), Expect = 5e-83, Method: Composition-based stats. Identities = 107/633 (16%), Positives = 206/633 (32%), Gaps = 54/633 (8%) Query: 150 WTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNRE 209 W P + ++ + + K + R + E Sbjct: 278 WREEPITERHPWLVKVTVRLMAAVRNKCLTADEYAEARKMIVDKFMAECAATGRDVPSFE 337 Query: 210 ITAFLSCFGEEFY-NGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYK 268 I S + +H R + E+A + + Sbjct: 338 IPNAFSWAEHHVATKTDAELATEFGSHLHLWQRAEPRQIELA----------PMPGVDDR 387 Query: 269 WDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTA 328 T G +++ + + + + P A +D N + Y Sbjct: 388 QQTAGIGAEGVSSEG--SLAPVVDINARRNPVAP-AVTLTDTGNADLLVEAWGARLRYCP 444 Query: 329 DTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFN 388 DT W W T E + + E + SP+ Sbjct: 445 DTGKW--------LSWKGTRW-------EHGTDQGEAIVAARQVVEAIKLDDDSPKDVIQ 489 Query: 389 TDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTK 448 R + + + A+ + LD+ L G++DL TG + + Sbjct: 490 HRMRSLSRKGLENMVALAKCS---PDMRVRLADLDAEPYELNTPSGVVDLRTGHLLPHSP 546 Query: 449 ELYITKSTGTPFVEGEPSQEFLDLVSGYFESE-EVMDYFTRCVGMALLGGNKAQRFIHIR 507 + + TK TG + + + ++G F + E++ Y R G+A +G + Sbjct: 547 DGWHTKITGAGYNPAAVAPAWQKFLAGTFGDDVELIGYVQRLAGLAAIGKVTHHVLPFLF 606 Query: 508 GVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISET 567 G G +GKS LM+++ G+ + + + + RL G+R+V+ SE Sbjct: 607 GGGSNGKSVLMDVLANVLGDYAITAPANFLLAGR-----DRHETEIARLHGARMVVCSEI 661 Query: 568 NENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627 N + + AK+K +TGGD ++ R Y + S T F++ N V ++WRR Sbjct: 662 NAESKFDEAKVKVLTGGDILSGRYM-RQDYFDFTPSHTLFLMGNHQPQVSAGGTSFWRRL 720 Query: 628 IVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEE 685 ++PF + R+ + A +L W + G + + GL P L A +E Sbjct: 721 RLLPFLHTVPPEQRNPNLAAELIRDEGAAILAWVVAGARQIAADGLR--EPGSVLAATKE 778 Query: 686 ERQGTDTYQAWIDDCCDIGENLW--EESHSLAKSYSEYREQELNYDRKRISTRTVTLNLK 743 + D +I +CC++ + + K+Y + +S + L Sbjct: 779 YSEQEDALGRFISECCELTPGASGGAKPALVLKAYQRWAMSNGEDA--MVSQIKLGRELS 836 Query: 744 QKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFE 776 + R+ GL L+ +++ Sbjct: 837 AR-------FGVRSVAINGARVYAGLALQASWD 862 >gi|85715547|ref|ZP_01046528.1| hypothetical protein NB311A_17619 [Nitrobacter sp. Nb-311A] gi|85697742|gb|EAQ35618.1| hypothetical protein NB311A_17619 [Nitrobacter sp. Nb-311A] Length = 462 Score = 313 bits (802), Expect = 6e-83, Method: Composition-based stats. Identities = 103/481 (21%), Positives = 183/481 (38%), Gaps = 48/481 (9%) Query: 299 PKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNF 358 + L ++ F G Y T AW++ W+ K + F Sbjct: 17 IEPLANDIVTEDSAAMEFVDEHCGDLRYCHTTGAWFR--------WNGVFWKRDDTGCAF 68 Query: 359 LVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSIT 418 +E L+E+ + + S + N R V+ ++T Sbjct: 69 -QWARELARKLAEDQDKRGRYLTSKVSFANAVERFAQVD---------------PKVAVT 112 Query: 419 SDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF- 477 + D LG G +DL+TG +P ++ ITK+T ++ + + ++ Sbjct: 113 ASYWDRDPWKLGTPGGTVDLQTGILHEPRQDEGITKATSVAPLD-QDCPLWKRFLNEATR 171 Query: 478 ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537 +++ + + G L G + + G GG+GKS +N++ + A + Sbjct: 172 GDVDLIRFLRQWCGYCLTGITREHALAFVHGSGGNGKSVFINIVTSIMNDYATTAAMETF 231 Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597 + L L G+RIV SET E A+IKQMTGGD +TAR + Sbjct: 232 SAGKYA----QHPTDLAMLRGARIVTASETEEGRAWAEARIKQMTGGDPITARFM-RQDF 286 Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKK 657 F I+ N + + DDA RR+ +IP D +KL + Sbjct: 287 FTFKPQFKLTIIGNHQPVLHSVDDAARRRFNIIPVIHSPETPDRDLERKLMI-EAPAILQ 345 Query: 658 WFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDI----GEN-LWEESH 712 W ++G + GL PE A D W++DCC++ G N +W+ S Sbjct: 346 WMIEGCLDWQRNGL--CRPESVNAATAAYFSDQDLMGQWLEDCCEVKKDRGPNGIWDRSS 403 Query: 713 SLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLK 772 L +S++EY + + + S ++ +++++GF E R + ++L+ Sbjct: 404 DLFESWAEYAHKAGD---EPGSKKSFGQSMQRRGF------EPYRIPNVGTRAFRFVRLR 454 Query: 773 P 773 Sbjct: 455 T 455 >gi|291556511|emb|CBL33628.1| phage/plasmid primase, P4 family, C-terminal domain [Eubacterium siraeum V10Sc8a] Length = 752 Score = 313 bits (802), Expect = 6e-83, Method: Composition-based stats. Identities = 107/576 (18%), Positives = 193/576 (33%), Gaps = 63/576 (10%) Query: 233 VMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFY 292 + K A + ++ + W + + + + + Sbjct: 205 GRILKRFGNTDEAHKHFAEVAACCQPPLEQSELDSIWRS--AQRFYEKISAQEGYIPPEQ 262 Query: 293 HHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKIT 352 ++ L L + +SD M + +G Y+ T +++ + + Sbjct: 263 YNQNL---QLKPTDYSDVGQATMLAREYEGKLRYSPSTD---------FLVYNGRFWEES 310 Query: 353 ASIM-------------NFLVSMKEDVFDL----------------SEEPEDNNKNSKSP 383 +K+ V ++ + + + Sbjct: 311 KPKAQAVAQELTTRQLEEAETEIKKAVDEMMKNGAWELLASMGPKKAAMAFSSEQARSFQ 370 Query: 384 RFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETG-- 441 ++ T YR ++ A E + I LD+ L DL G Sbjct: 371 KYENATTYRNFAIKRRDSKNIFAALKETRPMVEIDQRQLDADEFLLNTPSATYDLRIGIA 430 Query: 442 QKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQ 501 + T YITK T + L++ + E++ Y G++ +G + Sbjct: 431 SAHEHTPADYITKQTSVDPADKGTEIWQDALITFFCGDNELISYVQEVAGLSAIGKVCVE 490 Query: 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRI 561 I G G +GKST N + G + + + + P L G R+ Sbjct: 491 ALIIAYGEGRNGKSTFWNTLARVLGTYSGNLSADTLTVGCKR----NVKPELAEAKGKRL 546 Query: 562 VIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDD 621 +I +E E ++ A +KQ++ D + A Y + +S S T + N V D Sbjct: 547 IIAAELEEGMRLSTANVKQLSSTDEIYAEKKYKDPFS-FVPSHTLVLYTNHLPKVGALDA 605 Query: 622 AWWRRYIVIPFDKPIANRD--ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVC 679 WRR IVIPF+ I ++A L K KW + G K I + + P V Sbjct: 606 GTWRRLIVIPFNARIEGSSDIKNYADYLYAKAGGAILKWIMAGAKRVIERDYHIVKPAVV 665 Query: 680 LKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVT 739 +A + R+ D + D+CC I + +S +Y Y Q +Y R ST Sbjct: 666 EEATRKYRENNDWLSQFFDECCVIDPDGKTKSGEFYTAYRSYCMQVGDYIR---STTDFY 722 Query: 740 LNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAF 775 L+ GF + ++ + +I GL+LK F Sbjct: 723 AALEAAGF--------VRRKTSAGIMISGLQLKSDF 750 >gi|313898154|ref|ZP_07831693.1| phage/plasmid primase, P4 family, C-terminal domain protein [Clostridium sp. HGF2] gi|312957182|gb|EFR38811.1| phage/plasmid primase, P4 family, C-terminal domain protein [Clostridium sp. HGF2] Length = 757 Score = 313 bits (802), Expect = 6e-83, Method: Composition-based stats. Identities = 107/568 (18%), Positives = 201/568 (35%), Gaps = 49/568 (8%) Query: 233 VMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFY 292 + + +K + W + + ++ + + Sbjct: 204 GRVIKKYGDCDKAYQTFIEESTKCTPPLEASELATIWHS--AQRFYARLSQQDGYIAPEV 261 Query: 293 HHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVY--------IW 344 ++ P +SD + + Y G Y+ T + + + + Sbjct: 262 YND---PSCYKPGDYSDVGQAEVLAKYFSGELRYSPATH-FIRYSDHYWQESEPGAQAVA 317 Query: 345 SLTLDKITASIMNFLVSMKEDVFD-------------LSEEPEDNNKNSKSPRFWFNTDY 391 + N ++ + + + +E+ + ++ F Y Sbjct: 318 HELTRRQLKEADNDMLDALDKLKNSGAQSLLDSMSKSKAEQLMNEDQMEAYQEFISAKAY 377 Query: 392 RRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQK--VKPTKE 449 ++ ++ T+ E+ + I+ LD+ L + DL G + E Sbjct: 378 QQFAIKRRDSKNITSTLKESRPMLEISPRDLDADCFALCTPEATYDLRKGMAGAREHRPE 437 Query: 450 LYITKSTGTPFVEGEPSQEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRG 508 +ITK T Q +LD + F+ ++E++DY G+A +G + I G Sbjct: 438 DFITKITSVSPNYKGQ-QIWLDCLDLIFQSNQELIDYVQMICGLAAIGKVYVEALIIAYG 496 Query: 509 VGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN 568 G +GKST N I G + + + R P + + G R++I +E Sbjct: 497 DGRNGKSTFWNAISRVLGLYSGNISADTLTVGCRR----NIKPEMAEVKGKRLLIAAEMQ 552 Query: 569 ENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYI 628 E +N + +KQ+ D + A Y + +S T + N V DD WRR I Sbjct: 553 EGARLNDSTVKQLCSTDDVFAEKKYKDPFS-FKPCHTLVLYTNHLPRVSASDDGIWRRLI 611 Query: 629 VIPFDKPIANRD--ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEE 686 VIPF+ I + ++++ L W ++G K I + +PE A +E Sbjct: 612 VIPFNAKITGSNDIKNYSEYLYDNAGGSILAWVIEGAKKVIESDYQIPVPECVQNAIDEY 671 Query: 687 RQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746 R D + ++ D C++ ++ E S SL ++Y Y Y R ST L++ G Sbjct: 672 RSQNDWFGHFLSDKCEVDQSYKESSSSLYQAYRNYSLDCNEYVR---STADFYFALEKAG 728 Query: 747 FIGGIKREKIEKEWKSKRIIKGLKLKPA 774 F KR KGL+L+ Sbjct: 729 FE--------RVTMSRKRYFKGLRLRED 748 >gi|315656932|ref|ZP_07909819.1| P4 family prophage LambdaSa04 [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492887|gb|EFU82491.1| P4 family prophage LambdaSa04 [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 753 Score = 313 bits (801), Expect = 8e-83, Method: Composition-based stats. Identities = 120/630 (19%), Positives = 223/630 (35%), Gaps = 58/630 (9%) Query: 175 KFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVM 234 +F + P V ++ W +N + Q A GE N + + V+ Sbjct: 151 RFIYGTSNPQVTVREGDQLLDAWLDNADEQDVFAAFDASTLVIGEGSRNATLSRFAGRVL 210 Query: 235 AVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDF--EEIGDTAKK--RSTFTSL 290 + +T + R+ + +E W++ ++ + +L Sbjct: 211 IRYGDTDQARDLFN--RKANLCEPPLNEGELQTIWNSACRFASKVAADPGYLPPEAYEAL 268 Query: 291 FYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWS----- 345 GL FSD + Y+ TK W D Sbjct: 269 ---------AGLRPDDFSDVGQADTLAGEYANKIRYSLATK-WLVYDHGVWDENDLSAQG 318 Query: 346 ----------LTLDKITASIMNFLVSMKEDVFDLSEEPEDNNK------NSKSPRFWFNT 389 D++ AS + + D+ S + + + R W Sbjct: 319 VVQELTSRQLEEADRLIASTWETMTATGADLVMASASSKARGIAKLTPVQATAFRAWDEA 378 Query: 390 DYRRQNVEENSKAKSTAQSL-EAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTK 448 + V +++ +L EAG I + LD L G DL G + Sbjct: 379 KNYHKFVLSRRLSRNITATLKEAGPILQVRIRDLDVDPYQLNTPAGTWDLRDGTSHEHNP 438 Query: 449 ELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIR 507 +TK T + +Q + D + +F E++ Y R VG+A +G + + Sbjct: 439 ADLLTKQTAVSPSDEG-AQIWADALDVFFQGDPELISYVQRIVGLAAIGQVFVEALVIAY 497 Query: 508 GVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISET 567 G G +GKST N I G + + + R P L G R++I +ET Sbjct: 498 GDGRNGKSTFWNTIARVLGTYSGTISADALTVGVRR----NVKPELAEARGKRLLIAAET 553 Query: 568 NENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627 E ++ + +KQ+ D ++A + + ++ S T + N V D WRR Sbjct: 554 EEGMRLSTSNVKQLASTDQISAEKKFKDPFA-FTPSHTLVLYTNHLPRVGAMDAGIWRRL 612 Query: 628 IVIPFDKPIA-NRD-ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEE 685 IVIPF+ I + D ++A L W ++G + ++G + P ++A + Sbjct: 613 IVIPFNATIEGDTDVKNYADHLFENAGGAILTWIMEGARLIHAEGYKLKAPPQVVQASQA 672 Query: 686 ERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK 745 ++ D + +++D CD+ + L E + L ++Y + + + R + ++Q Sbjct: 673 YKEDNDWFSQFLEDSCDVEDGLSERAGDLYQTYRAWAQNTSGWARPMV---DFNAAVEQA 729 Query: 746 GFIGGIKREKIEKEWKSKRIIKGLKLKPAF 775 GF + K+ K + GL + F Sbjct: 730 GF--------VRKKTKHGMYVYGLAIASEF 751 >gi|182681722|ref|YP_001829882.1| P4 family phage/plasmid primase [Xylella fastidiosa M23] gi|182631832|gb|ACB92608.1| phage/plasmid primase, P4 family [Xylella fastidiosa M23] Length = 843 Score = 313 bits (801), Expect = 8e-83, Method: Composition-based stats. Identities = 90/510 (17%), Positives = 182/510 (35%), Gaps = 50/510 (9%) Query: 294 HGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITA 353 + +D N + + + +A+ ++W T Sbjct: 353 AVERHDVPEALYLTTDTANAVRIAKHYGKRLMVSAE----------RWFVWEGTHWAHGM 402 Query: 354 SIMNFLV-SMKEDVFDLSEEPEDNNKNSKSPRFW-FNTDYRRQNVEENSKAKSTAQSLEA 411 L + + + E+ +++ + + + S+ +ST ++ A Sbjct: 403 DAARLLALKLSKIIRGEVEQWRTKRADTEKEKSKNAKIAAALEAWGKKSEMRSTVEAAMA 462 Query: 412 --GSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF 469 S+ + ++ LD+ L +G +DL TG E YIT+ + + F Sbjct: 463 LAKSMLVVKAERLDTDPWLLNCANGTVDLRTGTLKAHRPEDYITRVVPVNYTPDAAAPVF 522 Query: 470 LDLVSGYFESE-----EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524 ++ E + D+ R G G + + + G+G +GKSTL++LI Sbjct: 523 KKTLARITCEEGQAQQPLSDFLQRWFGYCATGSVREHKMAVMYGMGRNGKSTLLDLISGI 582 Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGG 584 G+ + A + + + L G R++ ++ET+E + +KQ TGG Sbjct: 583 LGSYAGVAAPGLLMDGG----HDRHPTEIADLAGRRMMTVNETSEGGILREGFVKQATGG 638 Query: 585 DCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA------- 637 D + AR + + E + ++ N ++ D W R ++IPF Sbjct: 639 DSLKARHMRSD-FFEFQPTHKLQLLTNHKPVIKGQDVGIWSRLMLIPFKARFGTAEEIEA 697 Query: 638 -----NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDT 692 D +KL W + G + GL+ PE+ A ++ + D Sbjct: 698 GAAQYPIDHKITEKL-AAEREGVLAWLVAGAVEWCKNGLNP--PEIVRDASKDYQTEQDR 754 Query: 693 YQAWIDDCCDIGENLWEESHS-----LAKSYSEYREQELNYDRKRISTRTVTLNLKQKGF 747 +I++ C +G E+ + L +Y+++ + Y +S L++ Sbjct: 755 IAQFIEEECVLGMEHEEKLTAPMGGGLYPAYTQWCKDSGVY---PLSKTRFLGELERCVP 811 Query: 748 IGGIKREKIEKEWKSKRI---IKGLKLKPA 774 K E +R+ I+G+ L A Sbjct: 812 KFRKKHIYETPEGGKRRMFLAIQGIALADA 841 >gi|28199007|ref|NP_779321.1| hypothetical protein PD1115 [Xylella fastidiosa Temecula1] gi|28057105|gb|AAO28970.1| phage-related protein [Xylella fastidiosa Temecula1] Length = 819 Score = 313 bits (801), Expect = 8e-83, Method: Composition-based stats. Identities = 90/510 (17%), Positives = 182/510 (35%), Gaps = 50/510 (9%) Query: 294 HGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITA 353 + +D N + + + +A+ ++W T Sbjct: 329 AVERHDVPEALYLTTDTANAVRIAKHYGKRLMVSAE----------RWFVWEGTHWAHGM 378 Query: 354 SIMNFLV-SMKEDVFDLSEEPEDNNKNSKSPRFW-FNTDYRRQNVEENSKAKSTAQSLEA 411 L + + + E+ +++ + + + S+ +ST ++ A Sbjct: 379 DAARLLALKLSKIIRGEVEQWRTKRADTEKEKSKNAKIAAALEAWGKKSEMRSTVEAAMA 438 Query: 412 --GSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF 469 S+ + ++ LD+ L +G +DL TG E YIT+ + + F Sbjct: 439 LAKSMLVVKAERLDTDPWLLNCANGTVDLRTGTLKAHRPEDYITRVVPVNYTPDAAAPVF 498 Query: 470 LDLVSGYFESE-----EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524 ++ E + D+ R G G + + + G+G +GKSTL++LI Sbjct: 499 KKTLARITCEEGQAQQPLSDFLQRWFGYCATGSVREHKMAVMYGMGRNGKSTLLDLISGI 558 Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGG 584 G+ + A + + + L G R++ ++ET+E + +KQ TGG Sbjct: 559 LGSYAGVAAPGLLMDGG----HDRHPTEIADLAGRRMMTVNETSEGGILREGFVKQATGG 614 Query: 585 DCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA------- 637 D + AR + + E + ++ N ++ D W R ++IPF Sbjct: 615 DSLKARHMRSD-FFEFQPTHKLQLLTNHKPVIKGQDVGIWSRLMLIPFKARFGTAEEIEA 673 Query: 638 -----NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDT 692 D +KL W + G + GL+ PE+ A ++ + D Sbjct: 674 GAAQYPIDHKITEKL-AAEREGVLAWLVAGAVEWCKNGLNP--PEIVRDASKDYQTEQDR 730 Query: 693 YQAWIDDCCDIGENLWEESHS-----LAKSYSEYREQELNYDRKRISTRTVTLNLKQKGF 747 +I++ C +G E+ + L +Y+++ + Y +S L++ Sbjct: 731 IAQFIEEECVLGMEHEEKLTAPMGGGLYPAYTQWCKDSGVY---PLSKTRFLGELERCVP 787 Query: 748 IGGIKREKIEKEWKSKRI---IKGLKLKPA 774 K E +R+ I+G+ L A Sbjct: 788 KFRKKHIYETPEGGKRRMFLAIQGIALADA 817 >gi|71902152|ref|ZP_00684176.1| Phage/plasmid primase P4, C-terminal [Xylella fastidiosa Ann-1] gi|71728086|gb|EAO30289.1| Phage/plasmid primase P4, C-terminal [Xylella fastidiosa Ann-1] Length = 848 Score = 312 bits (800), Expect = 1e-82, Method: Composition-based stats. Identities = 100/497 (20%), Positives = 180/497 (36%), Gaps = 52/497 (10%) Query: 308 SDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITA-SIMNFLVSMKEDV 366 +DA N + + N +W+ + + + + Sbjct: 370 TDAANAGRIAKRHGKQLM----------WTGNRWLVWNDRYWESDPVGAHALMADLPALI 419 Query: 367 FDLSEE----PEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLL 422 +E+ D E A T + L + + L Sbjct: 420 RAEAEQWRLKATDTEDGKAKNEKIAAALDAWSKKSEMGSAIETLERLLKKR-LRVPQEQL 478 Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESE-- 480 D++ L +G +DL TG E YIT+ F + EF+ ++ E Sbjct: 479 DTNPWLLNCANGTVDLRTGTLKAHRPEDYITRVVPLNFDPKATAPEFITTLARITCEEGQ 538 Query: 481 ---EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537 + + R G G + Q+F + G G +GKSTL++LI G + A Sbjct: 539 AGKPLCAFLQRWFGYCATGEVREQKFAVLYGDGNNGKSTLLDLITGILGRYSGVAAPG-L 597 Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597 + P+ A + L G R+V E+ E + + +KQ TGGD + AR YG + Sbjct: 598 LTGKNGPQHPNA---IADLAGRRMVTTHESGEGEVLREDFVKQATGGDTLKARYLYGE-F 653 Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA------------NRDASFAQ 645 E + ++ N ++ D WRR ++IPF RD A+ Sbjct: 654 FEFKPTHKLQLLTNHKPAIKGQDSGIWRRIMLIPFKAKFDAAEGEEIGNGKYPRDMRIAE 713 Query: 646 KLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE 705 KL W + G + GL P++ L A E+ ++ D +ID+ C++G Sbjct: 714 KL-AAEREGVLAWIVAGAVEWYKNGLRP--PDIVLAASEDYKEEQDRVGQFIDEECELGV 770 Query: 706 NLWEESHS-----LAKSYSEYREQELNYDRKRISTRTVTLNLKQK--GFIGGIKREKIEK 758 E+ + L +Y+++ + +S L+++ GF + +E + Sbjct: 771 EKEEKLSTPMGGGLYPAYTQWCKASG---VCALSKVRFLGGLERRVPGFKKKVTKETVGA 827 Query: 759 EWKSK-RIIKGLKLKPA 774 + + +I+G+ L A Sbjct: 828 GKRREFVVIQGVALVDA 844 >gi|323693308|ref|ZP_08107526.1| phage DNA polymerase [Clostridium symbiosum WAL-14673] gi|323502791|gb|EGB18635.1| phage DNA polymerase [Clostridium symbiosum WAL-14673] Length = 757 Score = 312 bits (799), Expect = 1e-82, Method: Composition-based stats. Identities = 108/568 (19%), Positives = 197/568 (34%), Gaps = 49/568 (8%) Query: 233 VMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFY 292 + + +K D W + + ++ + + Sbjct: 204 GRVIKKYGDSDKAYQAFIDESAKCVPPLDASELATIWHS--AQRFYARLSQQDGYIAPEV 261 Query: 293 HHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVY--------IW 344 ++ P FSD + + Y G Y+ T + + + + Sbjct: 262 YND---PSCYKPGDFSDVGQAEVLAKYFSGELRYSPATH-FIRYSDHYWQESEPGAQAVA 317 Query: 345 SLTLDKITASIMNFLVSMKEDVFD-----LSEEPEDNNKNS--------KSPRFWFNTDY 391 + N ++ + + + L + + Y Sbjct: 318 HELTRRQLKEASNDMLEALDKLKNSGAQSLLDSMSKSKAEQVMNENQLQAYQELLAAKAY 377 Query: 392 RRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQK--VKPTKE 449 ++ V+ T+ E+ + I+ LD+ + + DL G + E Sbjct: 378 QQFAVKRRDSKNITSTLKESRPMLEISPRDLDADCFAMCTPEATYDLRKGMAGAREHLPE 437 Query: 450 LYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRG 508 +ITK T Q +LD + F ++E++DY G+A +G + I G Sbjct: 438 DFITKITSVSPNYKGQ-QIWLDCLDLIFQGNQELIDYVQMICGLAAIGKVYVEALIIAYG 496 Query: 509 VGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN 568 G +GKST N I G + + + R P + + G R++I +E Sbjct: 497 DGRNGKSTFWNAISRVLGLYSGNISADTLTVGCRR----NIKPEMAEVKGKRLLIAAEMQ 552 Query: 569 ENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYI 628 E +N + +KQ+ D + A Y + +S T + N V DD WRR I Sbjct: 553 EGARLNDSTVKQLCSTDDVFAEKKYKDPFS-FKPCHTLVLYTNHLPRVSASDDGIWRRLI 611 Query: 629 VIPFDKPIANRD--ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEE 686 VIPF+ I + ++++ L W ++G K I + +P++ KA +E Sbjct: 612 VIPFNAKITDSSDIKNYSEYLYDNAGGSILAWVIEGAKKVIESDYQIPVPDLVQKAIDEY 671 Query: 687 RQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746 R D + ++ D C++ + E S SL ++Y Y Y R ST L++ G Sbjct: 672 RSQNDWFGHFLADKCEVDPSYKESSSSLYQAYRNYSLDCNEYVR---STADFYFALEKAG 728 Query: 747 FIGGIKREKIEKEWKSKRIIKGLKLKPA 774 F KR KGL+L+ Sbjct: 729 FE--------RITVSRKRYFKGLRLRDD 748 >gi|268610656|ref|ZP_06144383.1| Phage DNA polymerase [Ruminococcus flavefaciens FD-1] Length = 740 Score = 311 bits (797), Expect = 3e-82, Method: Composition-based stats. Identities = 135/689 (19%), Positives = 226/689 (32%), Gaps = 73/689 (10%) Query: 127 DILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVK 186 ++LG + V Y+ H K P +P + + + Sbjct: 83 EMLGDVAFAVTYSRHHNLAKGTVTARPRFHVFFPTSPCKDAVFHKAIKARIYKELSFFDG 142 Query: 187 DKKSIIPSKTWTNNN---NRQYTNREITAFLSCFGEEFYNGSHDEWI-PVVMAVHHETRG 242 + +N + + E L G + + + + Sbjct: 143 NALDASRFLFGSNGDVVWHEGSLTIEDWLQLMKSNRSIPEGQRNSTMSRIAGRLVKRFGV 202 Query: 243 SSKGKEIARRWSKQG-STYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKG 301 + + + + D++ W + + G + + + + Sbjct: 203 TEEAHAKFLEKAAECDPPLDDDELESIWQS--ACKFGTKVTSQEGY----VPPEEYGEEP 256 Query: 302 LLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKIT--------- 352 ++ FSD +T T ++ T + + Sbjct: 257 MIPDDFSDVGEARTLVNCYGDELAFTIATN---------YLRYNGTYWEESEQAAVMAMI 307 Query: 353 -------ASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPR------------FWFNTDYRR 393 A + + E + + +D K K D R Sbjct: 308 EHTDVQLAEADKQISAALEALEKVGISKQDAEKGGKKFESDLGLGEMKLYSRMKRYDVFR 367 Query: 394 QNVEENSKAKSTAQSLEA-GSIFSITSDLLDSSSRFLGEQDGILDLETG--QKVKPTKEL 450 + V + +S +L+A + + LD + L G DL G Sbjct: 368 KFVMKYRNIRSLNNALDAAKPLVLHNPEQLDGNPMLLNTPGGTYDLAKGLDGWKATDPAD 427 Query: 451 YITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGV 509 ITK T GE Q + D + +F + ++DY G+ L+G + I G Sbjct: 428 LITKVTTVVPN-GEGQQLWADALQVFFCGDQSLIDYVQMICGLCLIGKVYTEAMIIAYGD 486 Query: 510 GGSGKSTLMNLIKYAFGNQYV-INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN 568 G +GKST N+I G+ I+A+A + R P + L G R++I +E Sbjct: 487 GRNGKSTFWNVIYKVLGSYSGNISADALTVNCKR-----NVKPEMAELKGKRLIIAAELQ 541 Query: 569 ENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYI 628 E +N + +KQ+ D + A + +S S T + N V DD WRR I Sbjct: 542 EGMRLNTSVVKQLCSTDPIFAEKKFKAPFS-FEPSHTLVLYTNHLPKVAASDDGTWRRLI 600 Query: 629 VIPFDKPIAN--RDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEE 686 VIPF I ++ Q L W ++G ++ VD P+ L A Sbjct: 601 VIPFHAKIEGSADIKNYTQYLIDNAGGSVLSWLIEGAMKVVAADFKVDRPQCVLDAIGAY 660 Query: 687 RQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746 R G D A+I+DCC+ + E+S L K Y EY + Y R ST L+Q G Sbjct: 661 RDGNDWLGAFINDCCETDASYQEKSGDLYKRYREYCSESGEYVR---STTDFYTALEQAG 717 Query: 747 FIGGIKREKIEKEWKSKRIIKGLKLKPAF 775 F K+ S + I GL LK F Sbjct: 718 FK--------RKKMNSGKYIVGLCLKFDF 738 >gi|285019151|ref|YP_003376862.1| bacteriophage related protein [Xanthomonas albilineans GPE PC73] gi|283474369|emb|CBA16870.1| putative bacteriophage related protein [Xanthomonas albilineans] Length = 754 Score = 311 bits (796), Expect = 3e-82, Method: Composition-based stats. Identities = 94/493 (19%), Positives = 167/493 (33%), Gaps = 46/493 (9%) Query: 284 RSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYI 343 R ++ ++ + DA A Y + Y A W + Sbjct: 293 RLQMHAIDDDAAPVVSNDESVAGTEDALALAFTRRYHRDW-RYVA---TW-----GRWLV 343 Query: 344 WSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAK 403 W + + ++ + + + + N+K + Sbjct: 344 WDGQRWRTEDT-----LAATDLIRSVCRHAAVHADNAKIA----------TKLASAGTVS 388 Query: 404 STAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEG 463 + A + T+ D+ L G++DL TG++ + ITK T Sbjct: 389 GVERLARADRRHAATTAEWDADPWLLNTPGGVVDLRTGRRRTHERADRITKITTA--TPS 446 Query: 464 EPSQEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIK 522 + + ++ + E+ Y R VG AL G + + G G +GKS +N + Sbjct: 447 DGCPIWQRFLAEITDQDNELQAYLQRMVGYALTGSTQEHALFFLYGTGANGKSVFVNTLV 506 Query: 523 YAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMT 582 FG+ + + A + + L GSR V ET + +K+K +T Sbjct: 507 TIFGDYAANAPMDTFMETR----ADRHPTDMAGLRGSRFVAAIETEQGRRWAESKLKNLT 562 Query: 583 GGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRD 640 GGD ++AR + E F F+ N +RN D+A RR +IPF + RD Sbjct: 563 GGDKISARFM-RQDFFEFFPQFKLFVAGNHRPAIRNIDEAMKRRLHLIPFTITVPPERRD 621 Query: 641 ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDC 700 +KL W ++G + G + P+ L+A EE + D WI + Sbjct: 622 KHLQEKL-LNERDGILAWAVQGCLYWQRLG-RLAPPQQVLQATEEYFEAEDALGRWIGER 679 Query: 701 CDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEW 760 C N + L + + + + S + L +G + Sbjct: 680 CVRHVNAKSLTAELFNDWKLWADDAGEFI---GSQKRFADLLLTRGLEK-------WRNS 729 Query: 761 KSKRIIKGLKLKP 773 R +G+ LK Sbjct: 730 TGLRGFRGVGLKH 742 >gi|71275566|ref|ZP_00651851.1| Phage/plasmid primase P4, C-terminal [Xylella fastidiosa Dixon] gi|71163457|gb|EAO13174.1| Phage/plasmid primase P4, C-terminal [Xylella fastidiosa Dixon] Length = 843 Score = 311 bits (795), Expect = 4e-82, Method: Composition-based stats. Identities = 91/510 (17%), Positives = 183/510 (35%), Gaps = 50/510 (9%) Query: 294 HGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITA 353 + +D N + + + +AD ++W T Sbjct: 353 AVERHDVPEALYLTTDTANAVRIAKHYGKRLMVSAD----------RWFVWEGTHWAHGM 402 Query: 354 SIMNFLV-SMKEDVFDLSEEPEDNNKNSKSPRFW-FNTDYRRQNVEENSKAKSTAQSLEA 411 L + + + E+ +++ + + + S+ +ST ++ A Sbjct: 403 DAARLLALKLSKIIRGEVEQWRTKRADTEKEKSKNAKIAAALEAWGKKSEMRSTVEAAMA 462 Query: 412 --GSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF 469 S+ + ++ LD+ L +G +DL TG E YIT+ F + EF Sbjct: 463 LAKSMLVVKAERLDTDPWLLNCANGTVDLRTGTLKAHRPEDYITRVVPINFDPKATAPEF 522 Query: 470 LDLVSGYFES-----EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524 + ++ + + + R G G + + + G+G +GKSTL++LI Sbjct: 523 ITTLARITCEYGESFKPLCAFLQRWFGYCATGSVREHKMAVMYGMGRNGKSTLLDLISGI 582 Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGG 584 G+ + A + + + L G R++ ++ET+E + +KQ TGG Sbjct: 583 LGSYAGVAAPGLLMDGG----HDRHPTEIADLAGRRMMTVNETSEGGILREGFVKQATGG 638 Query: 585 DCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA------- 637 D + AR + + E + ++ N ++ D W R ++IPF Sbjct: 639 DSLKARHMRSD-FFEFRPTHKLQLLTNHKPVIKGQDVGIWSRLMLIPFKARFGTAEEIEA 697 Query: 638 -----NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDT 692 D +KL W + G + GL+ PE+ A ++ + D Sbjct: 698 GIAQYPIDHKITEKL-AAEREGVLAWVVAGAVEWCKNGLNP--PEIVRNASKDYQTEQDR 754 Query: 693 YQAWIDDCCDIGENLWEESHS-----LAKSYSEYREQELNYDRKRISTRTVTLNLKQKGF 747 +I++ C +G E+ + L +Y+++ + Y +S L++ Sbjct: 755 IAQFIEEECVLGMEHEEKLTAPMGGGLYPAYTQWCKDSGVY---PLSKVRFLGELERCVP 811 Query: 748 IGGIKREKIEKEWKSKR---IIKGLKLKPA 774 K K +R +I+G+ L A Sbjct: 812 DFRKKVTKETVGTGKRRDLVVIQGVGLVDA 841 >gi|61741085|gb|AAX54510.1| ATPase [Lymphocystis disease virus 1] Length = 865 Score = 310 bits (794), Expect = 5e-82, Method: Composition-based stats. Identities = 110/595 (18%), Positives = 191/595 (32%), Gaps = 74/595 (12%) Query: 199 NNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGS 258 + T +L D W+ + + T GS KG I +SK+ Sbjct: 249 EAILNEETRPSKLQYLIDLLPLECADDRDIWLEIGFCMWQITEGSPKGYTIWTSFSKKSE 308 Query: 259 TYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASR----------FS 308 Y+E+ W T SL++ K +G ++ Sbjct: 309 KYNEDECFDLW-------YRQMRSNNFTMASLYWLIKKYNSEGFADYVQLYECPPSKYYT 361 Query: 309 DA----YNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWS---LTLDKITASIMNFLVS 361 D K + + + WY+ D I+ S L + Sbjct: 362 DGSHVGIAKIVHHHFGSEFKCVSIKNHIWYRYDGVAWLECHVGVDLRRLISDSKAPVLQT 421 Query: 362 MKEDVFDLSEEPEDNNKNSKS---------------PRFWFNTDYRRQNVEENSKAKSTA 406 + + +S+ E + K + ++++ S Sbjct: 422 LDRQIKTVSDLLEGEETDEKYYQWQEELAQLTLEELEKLMDRLLKIKKSLRMTQFKNSVM 481 Query: 407 QSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGE-- 464 + E + + +DS+ + ++GI D + E Y K +++ Sbjct: 482 RECEELFFDPLFAQKIDSNPYLIAFKNGIFDFKQKTFRTGRPEDYCCKKLTINYIDYNFG 541 Query: 465 -------------PSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGG 511 +E L F E+ +F R + A +G N + + G G Sbjct: 542 GPLSCEPVNFNGSELKEILIFFQQVFPDVEIRTFFIRQLASAFVGANSEKICLFWTGSGN 601 Query: 512 SGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRL-MGSRIVIISETNEN 570 +GK+ LI+ F V S + + G+ANP L R G R ++ E + + Sbjct: 602 NGKTVTQTLIEKMFSIFAV-KLNTSVLTGKK-LSLGQANPELSRTGGGVRWAVMEEPDND 659 Query: 571 DEINAAKIKQMTGGDCMTARLNY--GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYI 628 + INA +K +TG D AR Y G E F I+ N ++ D A W R Sbjct: 660 ERINAGILKNLTGNDTFWARDLYCAGKDTKEITPMFKLHIICNNLPEIKYADQAVWNRVR 719 Query: 629 VIPFDKPIAN------------RDASFAQKLETKYTLEAKKWFLKGVKAYI---SKGLDV 673 V+PF+ R +F ++ L L Y L+ Sbjct: 720 VVPFESVFKPWEECPETYNERLRLKTFPVDVKFNEKLCKMTEPLAYYLIYYWLNMDRLNY 779 Query: 674 DIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNY 728 + P+ LKA ++ R D Y+ +ID+ +N L Y E+ + Y Sbjct: 780 NPPDKVLKATKDYRNENDLYKQFIDNNLTEEKNTILSDRLLYIKYKEWLNETHPY 834 >gi|298346382|ref|YP_003719069.1| phage-associated protein [Mobiluncus curtisii ATCC 43063] gi|298236443|gb|ADI67575.1| phage-associated protein [Mobiluncus curtisii ATCC 43063] Length = 747 Score = 310 bits (794), Expect = 5e-82, Method: Composition-based stats. Identities = 113/570 (19%), Positives = 192/570 (33%), Gaps = 66/570 (11%) Query: 240 TRGSSKGKEIARRWSKQG-STYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLI 298 S + +E+ + + Q + W + + G + + Sbjct: 208 FGNSDEARELFEQKATQCVPPLPPSELDAIWHS--ALKFGAKVVATPGYIPPERYAE--- 262 Query: 299 PKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNF 358 +GL + F+D + + ++ T +++ + + T Sbjct: 263 IQGLRPTDFTDVGQANVLADEYAQKLAFSEATD---------WLVYNGSFWEETRPGSRA 313 Query: 359 LVSMKEDVFDLSEEPEDNNKNSK-----------------SPRFWFNTDYR--------- 392 + L + + K + + F Sbjct: 314 IAQEL-TTRQLEQAAQLLEKAREACDSTGVTQLLSAMSLTKAKNLFTNVQWTAYEQLTGA 372 Query: 393 ----RQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTK 448 + ++ TA EA + +T LD+ L G +DL TGQ + Sbjct: 373 QTYEKYVLKRRDSKAITASLKEAAPMLQVTQADLDADPFALNTPGGTIDLTTGQMYEHDY 432 Query: 449 ELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIR 507 +ITK T T +L + +F +E++DY R VG+ +G + I Sbjct: 433 GDFITKQTTTDPATKG-MDTWLAALEVFFQGDQELIDYVQRIVGLTAIGKVYVEALIIAY 491 Query: 508 GVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISET 567 G G +GKST N I G + + + + P L G R++I +ET Sbjct: 492 GDGRNGKSTFWNTIARVLGTYAGNISADALTVGVKR----NVKPELAEAKGKRLLIAAET 547 Query: 568 NENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627 E ++ + KQM D + A Y ++ S T + N V D WRR Sbjct: 548 EEGMRLSTSIAKQMASTDLLYAEKKYKAPFA-FAPSHTLVLYTNHLPRVGAMDVGIWRRL 606 Query: 628 IVIPFDKPIANRD--ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEE 685 IVIPF+ I ++A+ L +W + G + I + P +A E Sbjct: 607 IVIPFEAKIEGSSDIKNYAEHLYQNAAGAVLQWIVDGARKVIDDDFVLKPPPKVRRALEA 666 Query: 686 ERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK 745 R D ++DD C+I + + S L Y Y Y R ST L+Q Sbjct: 667 YRFENDWMTHFLDDNCEIDPSFTQPSGELYSVYRAYALSVGEYAR---STSDFYSALEQL 723 Query: 746 GFIGGIKREKIEKEWKSKRIIKGLKLKPAF 775 GF + K+ R + GL+LK F Sbjct: 724 GF--------RRRRTKNARYVDGLRLKSEF 745 >gi|300909462|ref|ZP_07126923.1| P4 family prophage LambdaSa04 [Lactobacillus reuteri SD2112] gi|300893327|gb|EFK86686.1| P4 family prophage LambdaSa04 [Lactobacillus reuteri SD2112] Length = 751 Score = 310 bits (794), Expect = 5e-82, Method: Composition-based stats. Identities = 110/570 (19%), Positives = 196/570 (34%), Gaps = 46/570 (8%) Query: 233 VMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFY 292 + + +K ++ W + + G + + + Sbjct: 200 GRIIMRLGNTDEARQAFQEEAAKCDPPLSKQELKNIWHS--ATKFGQRMASQEGY--IPP 255 Query: 293 HHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYT-------ADTKAWYKKDKNNVYIWS 345 L + +SD +F K YT D K W + + + Sbjct: 256 EKYNQPNDDLQPADYSDTGESYVFVNNCKERVCYTNQSGFMWFDGKVWQESEPLALGEVQ 315 Query: 346 LTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKST 405 DK A + + + + FN + + + Sbjct: 316 RFTDKQLADAQLRVTNSYKKIQQNGVTSALQAMGKTKASRTFNDEQQAAFKNYENAKAYE 375 Query: 406 AQSLEAGSIFSITS-------------DLLDSSSRFLGEQDGILDLETGQK--VKPTKEL 450 A L+ S I + D+ L +G +L+ G + + Sbjct: 376 AFILKERSTRGINGILTNSRPKLVKEINDFDADPFLLNTPNGAFNLKKGMHGQQEIQADE 435 Query: 451 YITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGV 509 ITKST + + + + ++ +F + +++Y VG+ +G + I G Sbjct: 436 LITKSTSCVPG-NQGASLWQEALTTFFCGDQALINYVQEIVGLVAIGQVYLEALIIAYGS 494 Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569 G +GKST N I G + + R P + + G R++I +E E Sbjct: 495 GRNGKSTFWNTIANVLGTYTGHLSADALTTGVRR----NVKPEMAEVKGKRLIISAELEE 550 Query: 570 NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIV 629 +N + +KQ+ D + A Y +S S T + N V D+ WRR IV Sbjct: 551 GKRLNTSIVKQLCSTDEIYAEKKYMKPFS-FTPSHTIVLYTNYLPHVGGNDEGIWRRLIV 609 Query: 630 IPFDKPIANRD--ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEER 687 IPF IA R+ ++AQ+L K +W ++G + I + + P KA Sbjct: 610 IPFKAKIAKRNDIKNYAQRLTEKAGPAVLQWIIEGAQRTIQQNYRLTTPAAVEKAVNAYH 669 Query: 688 QGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGF 747 D ++++ C++ + ++S L + Y EY + Y R ST LK GF Sbjct: 670 ADNDWLGHFLNENCELDPSYEQKSGDLYQKYREYCQGIGEYIR---STTDFYTALKNAGF 726 Query: 748 IGGIKREKIEKEWKSKRIIKGLKLKPAFES 777 K+ + R IKGL+LK + Sbjct: 727 QRQHKQ--------NGRFIKGLRLKVEADE 748 >gi|13358409|ref|NP_078717.1| D5 family NTPase involved in DNA replication [Lymphocystis disease virus 1] Length = 874 Score = 310 bits (794), Expect = 5e-82, Method: Composition-based stats. Identities = 114/655 (17%), Positives = 215/655 (32%), Gaps = 77/655 (11%) Query: 154 PHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAF 213 P F D P + + +E + K K + K + N E + Sbjct: 210 PSCFGSTDDPRILACFYLTIMPQDKEPYLVTFKTVKLSLVDKIISKKANLLIEPLEKQSK 269 Query: 214 LSCFGEEFYNG---SHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWD 270 L + N W+ + + T GS++G ++ +SK+ ++++ W Sbjct: 270 LQKLIDLLPNECSNDRIIWLEIGFCLWQITDGSNEGFQLWLSFSKRSEKFNQDECFDIW- 328 Query: 271 TFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASR----------FSDA----YNKAMF 316 T SL++ K P G + ++D K + Sbjct: 329 ------FKQMKPNSFTIASLYWFIKKYNPIGFIDYIRLYKCSPAKYYTDGSHVGIAKIIH 382 Query: 317 SIYKKGHFLYTADTKAWYKKDKNNVYIWSL---TLDKITASIMNFLVSMKEDVFDLSEEP 373 +K + W+K D + I+ + + + + +S Sbjct: 383 HHFKMEFKCSSIKNHTWFKYDDVVWAECHVGVNLRRIISDAKGPIFRVLNQQIIVISNLI 442 Query: 374 EDNNKNSKS---------------PRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSIT 418 + + + F ++++ S + E + Sbjct: 443 NNEELDDEYYIWQSKLIHLSTEELINFRTQLCKIKKSLRMTQFKNSVMRECEELFFDPLF 502 Query: 419 SDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVE--------GEPSQEFL 470 + +DS+ + Q+G+ D + + + Y +K +V+ P Sbjct: 503 NQKIDSNPYLMAFQNGVFDFKQKLFRQGRPDDYCSKKLTINYVDYGISQLLSCNPEDFIN 562 Query: 471 D-------LVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKY 523 + F E+ +F R + A +GGN + + G G +GK+ L++ Sbjct: 563 QGLKETLIFLEQVFPDIELRVFFIRQLASAFIGGNSEKICLFWTGSGNNGKTITQTLMEQ 622 Query: 524 AFGNQYVINAEASDIMQNRPPEAGKANPSLIRL-MGSRIVIISETNENDEINAAKIKQMT 582 FG V S I + P G+ANP L+R G R ++ E + ++ INA +K +T Sbjct: 623 MFGPFAV-KLNTSVITGKKLPT-GQANPELVRTGGGVRWAVMEEPDSDERINAGILKSLT 680 Query: 583 GGDCMTARLNY--GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI---- 636 G D AR Y G E F ++ N ++ D A W R VIPF+ Sbjct: 681 GNDTFWARDLYCTGKDTKEIIPMFKLHVICNNLPEIKYADQAVWNRVRVIPFESVFKLAE 740 Query: 637 --AN------RDASFAQKLETKYTLEAKKWFLKGVKAYI---SKGLDVDIPEVCLKAKEE 685 + F L+ L L Y L+ + P L A +E Sbjct: 741 ECPDTYKERLNQKIFPVDLKFSEKLSKLIEPLAYYLIYYWLNMDRLNYNPPTKVLNATKE 800 Query: 686 ERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTL 740 + D Y+ +ID+ +N+ L Y ++ + Y + + + Sbjct: 801 YQNDNDIYKQFIDNNLIKQDNIILTERLLYIRYKDWLAETHPYYVVQSRNKAIKR 855 >gi|332523756|ref|ZP_08400008.1| phage/plasmid primase, P4 family, C-terminal domain protein [Streptococcus porcinus str. Jelinkova 176] gi|332315020|gb|EGJ28005.1| phage/plasmid primase, P4 family, C-terminal domain protein [Streptococcus porcinus str. Jelinkova 176] Length = 761 Score = 310 bits (794), Expect = 5e-82, Method: Composition-based stats. Identities = 134/716 (18%), Positives = 239/716 (33%), Gaps = 93/716 (12%) Query: 127 DILGCGQYFVAYNIHPKTKKE-------YTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQE 179 +I + + + K Y + + + +E++ +KFF + Sbjct: 83 EIFADYNFALVTSRSHMQAKAGKAPRPKYHIYFQINEVTDKAIYVALKEELCNQYKFFDD 142 Query: 180 ITVPLVK----DKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYN--------GSHD 227 + + ++ + + F +FY GS + Sbjct: 143 HAKDAARFFFGNPQAEVVWHDSWLTIDEDLFQAVSIEDEEDFDADFYTPPNGPIQQGSRN 202 Query: 228 EWIPVVMA-VHHETRGSSKGKEIARRWSKQG-STYDEENFNYKWDTFDFEEIGDTAKKRS 285 + V A + + + ++ +++ D+ + W + + K S Sbjct: 203 STMSVFAAKILKRLGVTQEARDGFDEQAQKCVPPLDKAELDTIWGS--AVRFYNRTIKTS 260 Query: 286 TFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWS 345 + + L +SD + + YT T Y + Sbjct: 261 ---KGYVAPDAFNRETLKPDDYSDVGEAGVLAREYANRLAYTNATDYLY---------YD 308 Query: 346 LTLDKITASIM---------NFLVSMKEDVFDLSEEPEDNNKNSKSPR------------ 384 T + + L + ++ + + + + + Sbjct: 309 GTHWRENKQLALGAVVHFTDEQLAEANALLESADKQLQSSGIDELTIKAGGKRLENAVET 368 Query: 385 ---------FWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGI 435 + ++ + ++ A A + S+ LDS L + Sbjct: 369 PLQLKYLKAYLAAKEFHKFVMKHRDYKNLMAVYNTAKPMLSVELSELDSDDLLLNTPEAT 428 Query: 436 LDLETGQ--KVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGM 492 DL G + + E YITK T + + + ++ +F +E++DY +GM Sbjct: 429 YDLRKGINGQQEHNPEDYITKITAVSPSDQG-MGLWQETLATFFCNDQELIDYVQEIIGM 487 Query: 493 ALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS 552 A +G + I G G +GKST N I G+ + + M N+ +P Sbjct: 488 AAIGKVYQEHMIIAYGGGANGKSTFWNTIARVLGSYSGKLSADALTMSNKR----NVSPE 543 Query: 553 LIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612 L L G R+VI SE E +N A +KQ+T D + A Y + + S T + N Sbjct: 544 LAELKGKRLVIASEMAEGMRLNTAVVKQITSTDEIQAEKKYKDPFH-FVPSHTLVLYTNH 602 Query: 613 HLFVRNPDDAWWRRYIVIPFDKPIANRD--ASFAQKLETKYTLEAKKWFLKGVKAYISKG 670 V DD WRR +VIPF+ I R +FA L W ++G + I Sbjct: 603 LPKVGANDDGTWRRLVVIPFNAKITGRSDIKNFADYLYDNAAPAIMSWIIEGAEKAIKAN 662 Query: 671 LDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDR 730 +P + + R+ D ++ DCC +G+ L E+S L Y Y + + Y R Sbjct: 663 FKTKVPTAVSASVKAYREANDWLGHFLSDCCQVGDQLTEKSGELYSQYRAYCAKNMEYTR 722 Query: 731 KRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDNSNIID 786 ST L Q GF K +I GLKL VDD + ID Sbjct: 723 ---STTDFYSALDQAGFK--------RKRTSKGNLILGLKL------VDDGYDFID 761 >gi|325662086|ref|ZP_08150705.1| hypothetical protein HMPREF0490_01443 [Lachnospiraceae bacterium 4_1_37FAA] gi|325471749|gb|EGC74968.1| hypothetical protein HMPREF0490_01443 [Lachnospiraceae bacterium 4_1_37FAA] Length = 766 Score = 310 bits (793), Expect = 8e-82, Method: Composition-based stats. Identities = 103/612 (16%), Positives = 204/612 (33%), Gaps = 49/612 (8%) Query: 193 PSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARR 252 + E A E N + + + + ++ Sbjct: 173 SDGDLVTGAPEEDEEFEAPAHSGPILEGSRNKTLSHY--AGRILKKYGLSDDRSFQVFME 230 Query: 253 WSKQG-STYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAY 311 + + ++ W++ + ++ + G+ +SD Sbjct: 231 YVNKCDPPLPKDEVATIWNS-ATHFYTTKVMTSDGYVPPEEYNDEFGSAGMKPEDYSDIG 289 Query: 312 NKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWS----LTLDKITASIMNFLVSMKEDVF 367 M + +T T + + D + ++ + E Sbjct: 290 EAKMLTREYGNELKFTTATD-YLRYDGDCWREDKQLAVGATEEFLDLQLADAQDAVESAV 348 Query: 368 DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLE----------------- 410 + + +++ + + AQ+ Sbjct: 349 NALIAAGVDEVTARAGGKALEKACDTPKLMKLYFMLLGAQTYLKFVQKRRDYKYIVSTLN 408 Query: 411 -AGSIFSITSDLLDSSSRFLGEQDGILDLETGQK--VKPTKELYITKSTGTPFVEGEPSQ 467 A + +I LD + + +++E G + E ITK T E + Sbjct: 409 AAKPMLAINVSELDKNPFLINTPQSTINMEKGMVGAREHNPEDLITKITACSPSEVGKT- 467 Query: 468 EFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFG 526 + D ++ +F +E+++Y + VG+A +G + I G G +GKST N I G Sbjct: 468 IWEDALNTFFVGDQELIEYVQQTVGVAAVGKVFQEHMIIAYGGGANGKSTFWNTIFRVLG 527 Query: 527 NQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDC 586 N + + + + P + L G R++I SE E +N A +KQ+ D Sbjct: 528 NYAGKISAEALTVNCKR----NVKPEMAELKGKRLIIASEMEEGMRLNTATVKQLCSTDE 583 Query: 587 MTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDASFA 644 + A Y + +S S T + N V DD WRR +VIPF+ I ++A Sbjct: 584 IQAEKKYKDPFS-FVPSHTLVLYTNHLPKVGANDDGIWRRLVVIPFNAKITGASDIKNYA 642 Query: 645 QKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIG 704 L W ++G + I+ P+V A E R+ D +I++CCD+ Sbjct: 643 DYLYDNAGGYIMSWIIEGARKAIATDFKTKQPKVVEDAIESYREDNDWLGQFIEECCDVD 702 Query: 705 ENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKR 764 + +S L ++Y + Y R ST ++++ GF +++ Sbjct: 703 KTFTAKSGELYQAYRAHCTLNGEYIR---STSDFYSSMEKAGFN--------KRKTNKGI 751 Query: 765 IIKGLKLKPAFE 776 ++ G+ LK + Sbjct: 752 LVMGIGLKDGQD 763 >gi|315654960|ref|ZP_07907865.1| P4 family prophage LambdaSa04 [Mobiluncus curtisii ATCC 51333] gi|315490921|gb|EFU80541.1| P4 family prophage LambdaSa04 [Mobiluncus curtisii ATCC 51333] Length = 747 Score = 309 bits (792), Expect = 8e-82, Method: Composition-based stats. Identities = 127/746 (17%), Positives = 231/746 (30%), Gaps = 97/746 (13%) Query: 66 YAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGH 125 D+D+ +P+ + + LI + + + Sbjct: 61 VVMDVDN--------------DHSNSPVDWVTPESLALIF---PGVALATATSRNHLKPK 103 Query: 126 LDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLV 185 + ++ + I P T + + K+ + + + +F V Sbjct: 104 GEKTARPRFHAYFPIKPVTDAAF---YTGIKKKLASYTGIFDRNALDAARFIYGNPAAEV 160 Query: 186 KDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHE--TRGS 243 + + + + A L E G+ + A + Sbjct: 161 TWVDGALSITDF--------LDADAFAALEMATGEIREGARN-ATMSGFAGRVIVRFGNT 211 Query: 244 SKGKEIARRWSKQG-STYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGL 302 + ++ ++ + W + + G + + +GL Sbjct: 212 EQARQFFEMKAQTCVPPLPDGELEAIWHS--ALKFGAKVAATPGYIPPERYAE---IQGL 266 Query: 303 LASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSM 362 + F+D + + ++ T +++ + + T + Sbjct: 267 RPADFTDVGQATVLADEYAQKLAFSEATD---------WLVYNGSFWEETRPGSRAIAQE 317 Query: 363 KEDVFDLSEEPEDNNKNSK------------------------------SPRFWFNTDYR 392 L + + K + + Y Sbjct: 318 L-TTRQLEQAADLLEKAREACDSTGVTQLLSAMSLTKAKNLFTKVQWNAYEQLTDAQAYE 376 Query: 393 RQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYI 452 + ++ TA EA + +T LD+ L G +DL TGQ + +I Sbjct: 377 KYVLKRRDSKAITASLKEAAPMLQVTQADLDAGPFALNAPGGTIDLTTGQIHEHDYGDFI 436 Query: 453 TKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGG 511 TK T T +L + +F +E++DY R VG+ +G + I G G Sbjct: 437 TKQTTTDPATKG-MDTWLAALEVFFQGDQELIDYVQRIVGLTAIGKVYVEALIIAYGDGR 495 Query: 512 SGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEND 571 +GKST N I G + + + + P L G R++I +ET E Sbjct: 496 NGKSTFWNTIARVLGTYAGNISADALTVGVKR----NVKPELAEAKGKRLLIAAETEEGM 551 Query: 572 EINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIP 631 ++ + KQM D + A Y ++ S T + N V D WRR IVIP Sbjct: 552 RLSTSIAKQMASTDLLYAEKKYKAPFA-FAPSHTLVLYTNHLPRVGAMDVGIWRRLIVIP 610 Query: 632 FDKPIANRD--ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQG 689 F+ I ++A+ L +W + G + I P +A E R Sbjct: 611 FEAKIEGSSDIKNYAEHLYQNAAGAVLQWIVDGARKVIDDDFVFKPPPKVRRALEAYRFE 670 Query: 690 TDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIG 749 D ++DD C+I + + S L Y Y Y R ST L+Q GF Sbjct: 671 NDWMTHFLDDNCEIDPSFTQPSGELYSVYRAYALSVGEYAR---STSDFYSALEQLGF-- 725 Query: 750 GIKREKIEKEWKSKRIIKGLKLKPAF 775 + KS R + GL+LK F Sbjct: 726 ------RRRRTKSARYVDGLRLKSEF 745 >gi|326791702|ref|YP_004309523.1| phage/plasmid primase, P4 family [Clostridium lentocellum DSM 5427] gi|326542466|gb|ADZ84325.1| phage/plasmid primase, P4 family [Clostridium lentocellum DSM 5427] Length = 730 Score = 309 bits (792), Expect = 9e-82, Method: Composition-based stats. Identities = 98/470 (20%), Positives = 172/470 (36%), Gaps = 20/470 (4%) Query: 293 HHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKIT 352 K I + R D N +I K + D WY + + +I Sbjct: 264 EEQKRISEPYKNYRLDDTDNAHTMAIMYKDRLCFAYDMNKWYLYNGIKWEEDRVDGVRIL 323 Query: 353 ASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAG 412 A M + M D + + + + + F + +N S E Sbjct: 324 AGKM--IERMGHDFALILSKM---PEGREKKKQTFLYNMHLKNCRSYRGKSSILN--ETK 376 Query: 413 SIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDL 472 + I S + + +G D+ Q + Y+++ T +VE + + Sbjct: 377 HLLPIVSTHFNQPRHLINMPNGTYDINDKQLKEHRATDYLSQVTNVAYVENIAAPNWEKF 436 Query: 473 VSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVI 531 + F E+M Y + +G +L G Q G G +GK +++ Y + Sbjct: 437 IKQIFLGDRELMRYVQKAIGYSLTGFTHEQCMFIGYGDGANGKGVFKDILSYILNDYVKC 496 Query: 532 NAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARL 591 +A I Q R + +A+P +I LM +R+V+ E+N+ N IKQ+TG D +TAR Sbjct: 497 -PQAETISQIR--QGSEASPDIINLMDARLVVCVESNKGVRFNEGLIKQLTGEDKVTARR 553 Query: 592 NYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDASFAQKLET 649 Y S F ++ N V D WRR VIPF + +D +KL Sbjct: 554 LYCEPTS-FLPQFKLWLFTNHMPEVVGTDKGIWRRLKVIPFKLDLPEEKKDKHLKEKL-M 611 Query: 650 KYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWE 709 K W ++G+ Y+ +GL P + E ++ +DT ++ +C E Sbjct: 612 KEVGGILWWCIQGIHLYLEEGLK--EPPAVINLVHEFKEESDTLGLFLKECTIHKEGSKV 669 Query: 710 ESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKE 759 ++ L Y E+ L++K++ R ++ Sbjct: 670 QAKDLYTKYVEWCRANNEVPDN---KTRFGLDMKKRIPKESDGRNVYYRD 716 >gi|225573260|ref|ZP_03782015.1| hypothetical protein RUMHYD_01451 [Blautia hydrogenotrophica DSM 10507] gi|225039392|gb|EEG49638.1| hypothetical protein RUMHYD_01451 [Blautia hydrogenotrophica DSM 10507] Length = 740 Score = 309 bits (792), Expect = 1e-81, Method: Composition-based stats. Identities = 128/673 (19%), Positives = 226/673 (33%), Gaps = 52/673 (7%) Query: 136 VAYNIHPKTK----KEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSI 191 VA+ I P K+ P P+ E L + Q+ Sbjct: 87 VAFAIVPSRNNGKPKDGKTARPRFHVYFPHDPITDSETCAALKRAIQQKFPFFDSHALDA 146 Query: 192 IPSKTWTNNNNRQYTNREIT--AFLSCFGEEFYNGSHDEWIP--VVMAVHHETRGSSKGK 247 + EIT + + G + + V + Sbjct: 147 ARFIFGNPTEEILWHEGEITIDCIVKPQEKSIPQGQRNSTLSHFAGRVVKRYGATEKAHQ 206 Query: 248 EIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRF 307 K +E W + + + + S ++ + + L + + Sbjct: 207 IFMEEADKCNPPLPDEELASIWQS--ACRFAGKVQSQEGYVSPEDYNDEFCRESLKPADY 264 Query: 308 SDAYNKAMFSIYKKGHFLYTADTK-------AWYKKDKNNVYIWSLTLDKITASIMNFLV 360 SD + + YTA T W + + V LD A + + Sbjct: 265 SDIGQAKVLAKEYGMELRYTAATDYIRFCGACWVESKQQAVGAAEEFLDLQLADAKDDVR 324 Query: 361 SMKEDVFDLSEEPEDNNKNSKSPR-------------FWFNTDYRRQNVEENSKAKSTAQ 407 ++ + D+ +D K+ + Y+ ++ + Sbjct: 325 WTRQALLDVGVAEDDIMAGGKALEKKISGGQTNVYLAYLSALAYQAFVMKRRDMKYVVSA 384 Query: 408 SLEAGSIFSITSDLLDSSSRFLGEQDGILDLETG--QKVKPTKELYITKSTGTPFVEGEP 465 A + I+ LD L DG L G + + E YITK T + Sbjct: 385 LQAAKPMLEISVSDLDRDGFLLNTPDGTYYLPDGLEGRRDHSPEDYITKITAAGPGDQGK 444 Query: 466 SQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524 +LD + F + + ++DY + VGMA +G + I G G +GKST N + Sbjct: 445 -DLWLDALDTIFCQDQALIDYVQQIVGMAAVGRVYLESLIIAYGEGRNGKSTFWNAVARV 503 Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGG 584 G + + + + P L + G R++I +E E +N + +KQM Sbjct: 504 LGTYSGNMSADTLTVGCKR----NVKPELAEVKGKRLIIAAELEEGMRLNTSVVKQMCST 559 Query: 585 DCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDAS 642 D + A Y + +S S T + N V D WRR IVIPF+ I + Sbjct: 560 DEIFAEKKYKDPFS-FTPSHTLVLYTNHLPRVGANDPGTWRRLIVIPFNAKIEGSGDIKN 618 Query: 643 FAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCD 702 +A L ++ W ++G K IS+ + P A + R+ D ++ +CC+ Sbjct: 619 YADYLVSEAAPSIMTWIIEGAKKAISRNFHIPAPACVEDAIKSYREDNDWLGHFLGECCE 678 Query: 703 IGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKS 762 + + E+S L + Y Y + Y R ST L+ GF+ ++ K+ Sbjct: 679 VDKVYREKSGELYQEYRSYCMRTGEYAR---STADFYNALELAGFM--------RQKTKT 727 Query: 763 KRIIKGLKLKPAF 775 I+GL++ F Sbjct: 728 GNFIRGLRIIEDF 740 >gi|227530259|ref|ZP_03960308.1| phage DNA polymerase [Lactobacillus vaginalis ATCC 49540] gi|227349813|gb|EEJ40104.1| phage DNA polymerase [Lactobacillus vaginalis ATCC 49540] Length = 749 Score = 309 bits (791), Expect = 1e-81, Method: Composition-based stats. Identities = 111/570 (19%), Positives = 199/570 (34%), Gaps = 46/570 (8%) Query: 233 VMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFY 292 + + + +K ++ W++ + G + + + Sbjct: 200 GRIIMRLGNTAEARQAFQEEAAKCDPPLSKQELKTIWNS--AIKFGQRMANQKDY--IPP 255 Query: 293 HHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYT-------ADTKAWYKKDKNNVYIWS 345 L + +SD +F K YT D K W + + + Sbjct: 256 EKYNQPNDDLQPADYSDTGESYVFVNNCKERVCYTNQSGFMWFDDKVWQESEPLALGEVQ 315 Query: 346 LTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKST 405 DK A + + + + FN + + + Sbjct: 316 RFTDKQLADAQLRVTQSYQAIQNNGVAKALQTMGKTKASRTFNDEQQAAFKNYENAKAYE 375 Query: 406 AQSLEAGSIFSITS-------------DLLDSSSRFLGEQDGILDLETGQK--VKPTKEL 450 A L+ S I + D+ L +G +L+ G + + Sbjct: 376 AFILKERSTRGINGILTNSRPKLVKEINDFDADPFLLNTPNGPFNLKKGMHGQQEIQADE 435 Query: 451 YITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGV 509 ITKST + + + + ++ +F + +++Y VG+ +G + I G Sbjct: 436 LITKSTSCVPG-NQGASLWQEALTTFFCGDQALINYVQEIVGLVAIGQVYLEALIIAYGS 494 Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569 G +GKST N I G + + R P + + G R++I +E E Sbjct: 495 GRNGKSTFWNTIANVLGTYTGHLSADALTTGVRR----NVKPEMAEVKGKRLIISAELEE 550 Query: 570 NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIV 629 +N + +KQ+ D + A Y +S S T + N V D+ WRR IV Sbjct: 551 GKRLNTSIVKQLCSTDEIYAEKKYMKPFS-FTPSHTIVVYTNYLPHVGGNDEGIWRRLIV 609 Query: 630 IPFDKPIANRD--ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEER 687 IPF+ IA R+ ++AQ L K +W ++G + I + + P KA Sbjct: 610 IPFNAKIAKRNDIKNYAQYLTEKAGPAVLQWIIEGAQRTIQQNYQLTTPAAVTKAVRAYH 669 Query: 688 QGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGF 747 D ++++ C++ + ++S L + Y EY + Y R ST + LK GF Sbjct: 670 ADNDWLGHFLNENCELDPSYEQKSGDLYQKYREYCQGIGEYTR---STTDFYMALKNAGF 726 Query: 748 IGGIKREKIEKEWKSKRIIKGLKLKPAFES 777 K+ S R IKGL+LK + Sbjct: 727 QRQHKQ--------SGRFIKGLRLKVDADE 748 >gi|6960323|gb|AAF12794.2|AF195093_1 putative DNA-primase/helicase [Streptomyces coelicolor A3(2)] Length = 426 Score = 309 bits (790), Expect = 2e-81, Method: Composition-based stats. Identities = 85/434 (19%), Positives = 162/434 (37%), Gaps = 26/434 (5%) Query: 347 TLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYR-RQNVEENSKAKST 405 T +I ++ + E + F ++ R S + Sbjct: 4 TRWQIDEDDT--------VLWAAGDLAETIATHDPRGLFTTTALHKHRTRAMSTSGMNAM 55 Query: 406 AQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP 465 + + +D LD+ L G++DL TG P + T + P Sbjct: 56 LTQARSAPGMVLKADRLDADPYALCTPRGVVDLRTGLLRAPDPNKDFHSRSTTVGPQQMP 115 Query: 466 SQEFLDLVSGYFE-SEE---VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLI 521 +L ++ F E ++DY +G ++ G AQ + G G +GKS L++++ Sbjct: 116 VPRWLRFLTDTFGADAEGQQMIDYLHLLLGYSITGDVGAQILPFLWGTGKNGKSVLLDVM 175 Query: 522 KYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM 581 G+ + + L L G R+ + SE D+ + A++K + Sbjct: 176 MKLLGDYADAAPPGFLMAKPFE----GHPTDLAELHGRRVYVCSEIKPGDKFDEARVKLL 231 Query: 582 TGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--R 639 TGGD + AR + +S + +++ N V A+WRR +IPF++ + + + Sbjct: 232 TGGDRIKARRMRQDPFS-FEPTHKLWLLGNHKPEVGTGGFAFWRRMRLIPFERVVPDDRK 290 Query: 640 DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD 699 + A L + W + G + Y+ D+ PE A + D + ++ Sbjct: 291 IDNLADLLVMEEGPGILAWLIDGARRYLGGDRDLTGPERVRIATTAYAETEDHTGRFYEE 350 Query: 700 CCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKE 759 CC +G L E +L +Y+ + E + IS+R ++ G+ K K Sbjct: 351 CCRLGPELRAEQTALYAAYTAWCHNEGA---QIISSRAFASRTREL---VGLASPKEMKV 404 Query: 760 WKSKRIIKGLKLKP 773 ++ G+ L Sbjct: 405 SNQRKYYPGIGLLT 418 >gi|326790511|ref|YP_004308332.1| phage/plasmid primase, P4 family [Clostridium lentocellum DSM 5427] gi|326541275|gb|ADZ83134.1| phage/plasmid primase, P4 family [Clostridium lentocellum DSM 5427] Length = 729 Score = 309 bits (790), Expect = 2e-81, Method: Composition-based stats. Identities = 92/478 (19%), Positives = 172/478 (35%), Gaps = 28/478 (5%) Query: 277 IGDTAKKRSTFTSLFY----HHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKA 332 + + + L KL+ + R D N + + + D Sbjct: 244 TDYLEEGHTKYELLQLVEQVEKQKLLSEPYKNYRLDDTDNAQTMADMFRSKLCFAYDVNK 303 Query: 333 WYKKDKNNVYIW--SLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTD 390 WY + + M D + E+ + K + N Sbjct: 304 WYLYNGVKWEEDRVDGVRL----LANEMIDRMSNDFALILGNMEEGKERKKQAVLYQNHL 359 Query: 391 YRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKEL 450 ++ + + E + I S +S + G + + + Sbjct: 360 KSCRSHRGKTSILN-----ETKHLLPIVSTTFNSRRDVINTPTGTYLIHDKEVRPHCYKD 414 Query: 451 YITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGV 509 Y++++T VE + + ++ F +E++ Y + +G +L G + Q G Sbjct: 415 YLSQATQVSVVEDAKAPTWERFINEIFLGDQELIRYVQKAIGYSLTGFTREQCMFIGYGD 474 Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569 G +GK +++ Y F + +A I Q R + +A+P +I LM +R+V+ E+N+ Sbjct: 475 GANGKGVFKDILSYIFDDYVKC-PQAETISQIR--QGSEASPDIINLMDARLVVCVESNK 531 Query: 570 NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIV 629 N IKQ+TG D +TAR Y S F ++ N V D WRR V Sbjct: 532 GVRFNEGLIKQLTGEDKVTARRLYCEPMS-FMPQFKLWLFTNHMPEVVGTDKGIWRRLKV 590 Query: 630 IPFDKPIAN--RDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEER 687 IPF + +D KL K W ++G+ Y+ +GL PE ++ E + Sbjct: 591 IPFKLDLPEHKKDRQLKDKL-MKEVEGILWWCIEGIHLYLEEGLK--EPEAIIELVHEFK 647 Query: 688 QGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK 745 + +DT ++ +C ++ L Y E+ L++K++ Sbjct: 648 EESDTLGLFLRECTINKVGSKVQAKDLYTRYVEWCRANNEVPDN---KTRFGLDMKKR 702 >gi|29366784|ref|NP_813724.1| gp9a [Streptomyces phage phiBT1] gi|29243104|emb|CAD80132.1| gp9a [Streptomyces phage phiBT1] Length = 808 Score = 309 bits (790), Expect = 2e-81, Method: Composition-based stats. Identities = 83/471 (17%), Positives = 158/471 (33%), Gaps = 45/471 (9%) Query: 308 SDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVF 367 SDA N + G Y ++W +A+ + + Sbjct: 366 SDAMNAHALVAWTDGRIKYAP---------GLGYFVWDGVTWVKSATRVRQEIHAMGAAL 416 Query: 368 DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSR 427 L+ + ++ + L + + + D+ Sbjct: 417 VLAG-----------------CLPESRGFTMTTRIDALMTELRSVPSVHVDAGEFDAKPH 459 Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFES-EEVMDYF 486 L ++G++DL TG K +T S + + + + + F E+ +Y Sbjct: 460 LLSFRNGVVDLRTGNIRAHDKNDMLTVSMPSDYDPTAKAPRWEQFLREIFPDHPELAEYM 519 Query: 487 TRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEA 546 R G + G Q F + G G +GKS F A+ + Sbjct: 520 QRLTGYGITGNTSEQCFAVLWGKGSNGKSVYTETCTDLFAPITKTTPFATFEDKGNG--- 576 Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 G L L +R+V+ SE ++ A +K++TG D +TAR + F Sbjct: 577 GGIPNDLAALRDARLVMASEGESGKPMSEAVLKRVTGKDKVTARFL-RQEFFTFTPKFLI 635 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEAKKWFLKGVK 664 + N ++ D+ WRR +IPF + RD +KL W ++G Sbjct: 636 LLATNHKPKFKSQDEGLWRRVKLIPFTRYFAPEERDYDLDRKL-RAEAAGIIAWAVRGAV 694 Query: 665 AYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWE-ESHSLAKSYSEYRE 723 + + GL PE KA E R +D + + ++ +Y+++ E Sbjct: 695 DWYANGLR--DPECISKATREYRATSDALAGFFPGVLEAADDTHVLPGADAYTAYTDWCE 752 Query: 724 QELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPA 774 E ++ S + +++ R ++K+ + G+K+ A Sbjct: 753 AEGLQRKEVWSRKAFYGAMEE--------RNVMKKKTNKGIALVGVKVADA 795 >gi|300933480|ref|ZP_07148736.1| phage-associated protein [Corynebacterium resistens DSM 45100] Length = 754 Score = 308 bits (788), Expect = 3e-81, Method: Composition-based stats. Identities = 104/674 (15%), Positives = 214/674 (31%), Gaps = 73/674 (10%) Query: 147 EYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYT 206 + P + D ++ + F+FF + + +++ T Sbjct: 111 RFHVYFPINPVADADAYAGLKKQLAARFEFFDPNAIDAG---------RFIYGHDDPSVT 161 Query: 207 NREITAFLSCFGEEFYNGS-HDEWIPVVMAVHHETRGS----------------SKGKEI 249 E + + + + +W ++ +R + + +++ Sbjct: 162 VVEGERTIDAWLADAVDEDVFAQWDDATQSIEEGSRNATLSRFAGRLLIRLGTTDEARDL 221 Query: 250 ARRWSKQG-STYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFS 308 R + + E W + T + + + + + + +S Sbjct: 222 FDRKAARCNPPLPEAEVEAIWRS--ATRFAKTVENQPGY-VPPEDFEASLDS-VRPADYS 277 Query: 309 DAYNKAMFSIYKKGHFLYT-------ADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVS 361 D + Y+ WY+ + ++ A L Sbjct: 278 DVGQAHALAKAYPDSLRYSEATDWLVYYDGVWYESAPAAQAVAQELTERQLAEAHELLED 337 Query: 362 MKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSL------------ 409 K+ + + + + FN ++ A +L Sbjct: 338 AKDQLAATGAAMLLASMSKAKAQAMFNAAQQKAFAAFEDAKTYAAYALKRRESRGITNCL 397 Query: 410 -EAGSIFSITSDLLDSSSRFLGEQDGILDLETG--QKVKPTKELYITKSTGTPFVEGEPS 466 EA + T + LD+ L G DL G + +TK T + + Sbjct: 398 KEARPMLLTTPEQLDADPYLLNTPSGTYDLRHGAASRRDHDPADLVTKQTSLDPG-TDGA 456 Query: 467 QEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF 525 + + + +F E++ Y R VG+A +G + + G +GKST N I Sbjct: 457 HLWQEALEVFFQGDAELIAYVQRIVGLAAIGQVFVEALVIAYEDGRNGKSTFWNTIARVL 516 Query: 526 GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGD 585 G + + P L G R++I +E+ E ++ + +KQ+ D Sbjct: 517 GTYAGNMSADVLTIGGMR----NVKPELAEAKGKRLIISAESEEGVRMSTSVVKQLASTD 572 Query: 586 CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDASF 643 + A Y ++ S T + N V D WRR IVIPF+ I ++ Sbjct: 573 QIYAEKKYKAPFA-FTPSHTLILYTNHLPRVGAMDAGIWRRLIVIPFEAKIEGASDIKNY 631 Query: 644 AQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDI 703 A L T+ W ++G + ++ + P ++A R+ + + ++D CD+ Sbjct: 632 ADYLYTQAGGAILAWIMEGARLIHAEDYHLKAPARVVEASAAYREENNWFAQFLDANCDL 691 Query: 704 GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSK 763 L E + L ++Y + + R + ++ GF K Sbjct: 692 DPGLSERAGDLYQAYRAWAMSTSGWARPMV---DFNATVEHHGFT--------RKRTMHG 740 Query: 764 RIIKGLKLKPAFES 777 + GL LK F++ Sbjct: 741 MFVHGLALKNEFDN 754 >gi|307580158|gb|ADN64127.1| P4 family phage/plasmid primase [Xylella fastidiosa subsp. fastidiosa GB514] Length = 842 Score = 307 bits (787), Expect = 3e-81, Method: Composition-based stats. Identities = 90/509 (17%), Positives = 182/509 (35%), Gaps = 49/509 (9%) Query: 294 HGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITA 353 + +D N + + + +A+ ++W T Sbjct: 353 AVERHDVPEALYLTTDTANAVRIAKHYGKRLMVSAE----------RWFVWEGTHWAHGM 402 Query: 354 SIMNFLV-SMKEDVFDLSEEPEDNNKNSKSPRFW-FNTDYRRQNVEENSKAKSTAQSLEA 411 L + + + E+ +++ + + + S+ +ST ++ A Sbjct: 403 DAARLLALKLSKIIRGEVEQWRTKRADTEKEKSKNAKIAAALEAWGKKSEMRSTVEAAMA 462 Query: 412 --GSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF 469 S+ + ++ LD+ L +G +DL TG E YIT+ + + F Sbjct: 463 LAKSMLVVKAERLDTDPWLLNCANGTVDLRTGTLKAHRPEDYITRVVPVNYTPDAAAPVF 522 Query: 470 LDLVSGYFESE-----EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524 ++ E + D+ R G G + + + G+G +GKSTL++LI Sbjct: 523 KKTLARITCEEGQAQQPLSDFLQRWFGYCATGSVREHKLAVMYGMGRNGKSTLLDLISGI 582 Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGG 584 G+ + A + + + L G R++ ++ET+E + +KQ TGG Sbjct: 583 LGSYAGVAAPGLLMDGG----HDRHPTEIADLAGRRMMTVNETSEGGILREGFVKQATGG 638 Query: 585 DCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA------- 637 D + AR + + E + ++ N ++ D W R ++IPF Sbjct: 639 DSLKARHMRSD-FFEFQPTHKLQLLTNHKPVIKGQDVGIWSRLMLIPFKARFGTAEEIEA 697 Query: 638 -----NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDT 692 D +KL W + G + GL+ P + A ++ + D Sbjct: 698 GVAQYPIDHKITEKL-AAEREGVLAWVIAGAVEWYRDGLNP--PGIVRDASKDYQTEQDR 754 Query: 693 YQAWIDDCCDIGENLWEESHS-----LAKSYSEYREQELNYDRKRISTRTVTLNLKQKGF 747 +I + C +G E+ + L +Y+++ + Y +S L++ Sbjct: 755 IAQFIAEECILGMEHEEKLTAPMGGGLYPAYTQWCKDSGVYA---LSKTRFLGELERCVP 811 Query: 748 IGGIKREKIEKEWKSK--RIIKGLKLKPA 774 KRE + K + +I+G+ L A Sbjct: 812 KFRNKRETRTLDGKRRELVVIQGIGLVDA 840 >gi|319757798|gb|ADV69740.1| Phage DNA polymerase [Streptococcus suis JS14] Length = 761 Score = 307 bits (787), Expect = 3e-81, Method: Composition-based stats. Identities = 119/579 (20%), Positives = 202/579 (34%), Gaps = 73/579 (12%) Query: 244 SKGKEIARRWSKQG-STYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGL 302 + ++ +++ D+ + W + + K S + + L Sbjct: 220 QEARDGFDEQAQKCVPPLDKAELDTIWGS--AVRFYNRTIKTS---KSYVTPDAFNRETL 274 Query: 303 LASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIM------ 356 +SD + + YT T Y + T + + Sbjct: 275 KPDDYSDVGEAGVLAREYANKLAYTNATDYLY---------YDGTHWRENKQLALGAVVH 325 Query: 357 ---NFLVSMKEDVFDLSEEPEDNNKNSKSPR---------------------FWFNTDYR 392 L + ++ + + + + + + ++ Sbjct: 326 FTDEQLAEANALLESADKQLQSSGIDELTIKAGGKRLENAVETPLQLKYLKAYLAAKEFH 385 Query: 393 RQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQ--KVKPTKEL 450 + ++ A A + S+ LDS L + DL G + + E Sbjct: 386 KFVMKHRDYKNLMAVYNTAKPMLSVELSELDSDDLLLNTPEATYDLRKGINGQQEHNPED 445 Query: 451 YITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGV 509 YITK T + + + ++ +F +E++DY +GMA +G + I G Sbjct: 446 YITKITAVSPSDQG-MGLWQETLATFFCNDQELIDYVQEIIGMAAIGKVYQEHMIIAYGG 504 Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569 G +GKST N I G+ + + M N+ +P L L G R+VI SE E Sbjct: 505 GANGKSTFWNTIARVLGSYSGKLSADALTMSNKR----NVSPELAELKGKRLVIASEMAE 560 Query: 570 NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIV 629 +N A +KQ+T D + A Y + + S T + N V DD WRR +V Sbjct: 561 GMRLNTAVVKQITSTDEIQAEKKYKDPFH-FVPSHTLVLYTNHLPKVGANDDGTWRRLVV 619 Query: 630 IPFDKPIANRD--ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEER 687 IPF+ I R +FA L W ++G + I +P + + R Sbjct: 620 IPFNAKITGRSDIKNFADHLYDNAAPAILSWIIEGAEKAIKANFKTKVPTAVSSSVKAYR 679 Query: 688 QGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGF 747 + D ++ DCC +G+ L E+S L Y Y + + Y R ST L Q GF Sbjct: 680 EANDWLGHFLSDCCQVGDQLTEKSGELYSQYRAYCAKNMEYTR---STTDFYSALDQAGF 736 Query: 748 IGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDNSNIID 786 K +I GLKL VDD + +D Sbjct: 737 K--------RKRTSKGNLILGLKL------VDDGYDFLD 761 >gi|300909417|ref|ZP_07126878.1| P4 family prophage LambdaSa04 [Lactobacillus reuteri SD2112] gi|300893282|gb|EFK86641.1| P4 family prophage LambdaSa04 [Lactobacillus reuteri SD2112] Length = 751 Score = 307 bits (786), Expect = 4e-81, Method: Composition-based stats. Identities = 118/667 (17%), Positives = 211/667 (31%), Gaps = 51/667 (7%) Query: 141 HPKTKKE-YTWTTPP-HRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWT 198 H KT + + P + L E EY F W Sbjct: 103 HHKTPRPKFHVYFPITEITDAKTYAELKHEIQEYFPYFDDNALDAARFVFGVPSTKAIWH 162 Query: 199 NNNNRQYTNREITAFLSCFGEEFYNGSHDEWIP---VVMAVHHETRGSSKGKEIARRWSK 255 + + + + + + + +K Sbjct: 163 EGSQAVDKFMMAQRYFAQQNIGSIHEGKRNATLSHFAGRIIMRLGNTAEARQAFQEEAAK 222 Query: 256 QGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAM 315 ++ W + + G + + + L + +SD + Sbjct: 223 CDPPLSKQELKNIWHS--ATKFGQRMANQKDY--IPPEKYNQPNDDLQPADYSDTGESYV 278 Query: 316 FSIYKKGHFLYT-------ADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFD 368 F K YT D K W + + + DK + + + + Sbjct: 279 FVNNCKERVCYTNQSGFMWFDGKVWQESEPLALGEVQRFTDKQLTDAQLRVTNSYKKIQQ 338 Query: 369 LSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITS--------- 419 FN + + + A L+ S I Sbjct: 339 NGVTSALQAMGKTKASRTFNDEQQAAFKNYENAKAYEAFILKERSTRGINGILTNSRPKL 398 Query: 420 ----DLLDSSSRFLGEQDGILDLETGQK--VKPTKELYITKSTGTPFVEGEPSQEFLDLV 473 + D+ L +G +L+ G + + ITKST + + + + + Sbjct: 399 VKEINDFDADPFLLNTPNGPFNLKKGMHGQQEIQADELITKSTSCIPG-NQGASLWQEAL 457 Query: 474 SGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532 + +F + +++Y VG+ +G + I G G +GKST N I G Sbjct: 458 TTFFCGDQALINYVQEIVGLVAIGQVYLEALIIAYGSGRNGKSTFWNTIANVLGTYTGHL 517 Query: 533 AEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLN 592 + + R P + + G R++I +E E +N + +KQ+ D + A Sbjct: 518 SADALTTGVRR----NVKPEMAEVKGKRLIISAELEEGKRLNTSIVKQLCSTDEIYAEKK 573 Query: 593 YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD--ASFAQKLETK 650 Y +S S T + N V D+ WRR IVIPF IA R+ ++AQ L K Sbjct: 574 YMKPFS-FTPSHTIVLYTNYLPHVGGNDEGIWRRLIVIPFKATIAKRNDIKNYAQYLTEK 632 Query: 651 YTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEE 710 +W ++G + I + + P KA D ++++ C++ ++ Sbjct: 633 AGPAVLQWIIEGAQRTIQQNYRLTTPAAVEKAVNAYHADNDWLGHFLNEKCELNPEYEQK 692 Query: 711 SHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLK 770 S L + Y EY + Y R ST LK GF K+ + R I+GL+ Sbjct: 693 SGDLYQKYREYCQGIGEYIR---STTDFYTALKNAGFQRQHKQ--------NGRFIEGLR 741 Query: 771 LKPAFES 777 LK + Sbjct: 742 LKVDADE 748 >gi|50843066|ref|YP_056293.1| phage-associated protein [Propionibacterium acnes KPA171202] gi|50840668|gb|AAT83335.1| phage-associated protein [Propionibacterium acnes KPA171202] gi|315106937|gb|EFT78913.1| phage/plasmid primase, P4 family protein [Propionibacterium acnes HL030PA1] Length = 752 Score = 307 bits (786), Expect = 5e-81, Method: Composition-based stats. Identities = 125/774 (16%), Positives = 237/774 (30%), Gaps = 82/774 (10%) Query: 38 EQLLSSEKIDKLPACGFGFVCGVG-------EQPLYAFDID--SKDEKTANTFKDTFEIL 88 S E++ G DID D D L Sbjct: 27 TDQTSLEQVA-WLDHVAATYTGDRRSSASFISSDCVVMDIDNDHTDNPDEWITPDDLAEL 85 Query: 89 HGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEY 148 M + + + ++ V + I P T + Sbjct: 86 -------------------MAGVEFMTATSRNHQKPKRTLSARPRFHVYFPISPVTDAD- 125 Query: 149 TWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNR 208 R + ++ +F T P W + + Sbjct: 126 -TYAGLKRRLAGRFGFFDPQALDA-GRFIYGTTNPETTIHNGTKLLDAWLDEADEIDVFA 183 Query: 209 EITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYK 268 A GE N + + V+ + +T + + R+ S + Sbjct: 184 AFDASTQVIGEGSRNATLSRFAGRVLIRYGQTAQARDLFD--RKASLCEPPLSDHELESI 241 Query: 269 WDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHF---- 324 W + + + + S + L F+D +M + Sbjct: 242 WQS--ACRFAAKVEAQPGYLSPEAYAEL---TSLRPEDFTDVGQASMLTAEYSSRLAFTE 296 Query: 325 ---LYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEP-------- 373 + W + I D+ A + L ++++ Sbjct: 297 ATDWLVYEGGVWSESAPAAQGIAQELTDRQLAEAGHLLEKARDELMVTGANAVLAAASSK 356 Query: 374 -----EDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSL-EAGSIFSITSDLLDSSSR 427 + + R + + V + ++++ L EA + T LD+ Sbjct: 357 AKALGGFTSPQRAAYRAFEDAKAYEAFVLKRRESRAITSCLREAHPMLLTTPARLDADPY 416 Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE-SEEVMDYF 486 L G D+ G + ITK T + ++ + ++ +F+ E++ Y Sbjct: 417 LLNTPGGTWDVRDGTRRDHNPLDLITKQTALDPTDTG-AEIWNRALNVFFQSDRELIGYV 475 Query: 487 TRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV-INAEASDIMQNRPPE 545 R VG+A +G + + G G +GKST N I G ++A+ I NR Sbjct: 476 QRIVGLAAIGTVMVEALVIAYGDGRNGKSTFWNTIARVLGTYAGNMSADVLTIGGNR--- 532 Query: 546 AGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFT 605 P L G R++I +E+ E ++ + +KQ+ D + A Y ++ S T Sbjct: 533 --NVKPELAEAKGKRLIIAAESEEGVRLSTSTVKQLASTDQIYAEKKYKAPFA-FTPSHT 589 Query: 606 PFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD--ASFAQKLETKYTLEAKKWFLKGV 663 + N V D WRR IVIPF+ I + ++A L W ++G Sbjct: 590 LILYTNHLPRVGAMDAGIWRRLIVIPFNAVIESSSDVKNYADHLYETAGGAVLAWIMEGS 649 Query: 664 KAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYRE 723 + ++ + P + A R+ + + ++D C++ +L E + L + Y + + Sbjct: 650 RLIHAEDYQLTPPAQVVAASSAYREENNWFAQFLDARCEVDPSLSERAGDLYQEYRAWAQ 709 Query: 724 QELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFES 777 + R L+Q GF ++ K + GL L F S Sbjct: 710 STSGWARPM---ADFNATLEQSGFE--------RRKSKHGMYVYGLALTSEFNS 752 >gi|298103519|ref|YP_003714761.1| gp11 [Streptomyces phage phiSASD1] gi|293338460|gb|ADE43478.1| gp11 [Streptomyces phage phiSASD1] Length = 834 Score = 307 bits (786), Expect = 5e-81, Method: Composition-based stats. Identities = 113/670 (16%), Positives = 205/670 (30%), Gaps = 63/670 (9%) Query: 128 ILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKV-----------EDTPLLSEEDVEYLFKF 176 + G Y V P T P + + S E V L Sbjct: 206 MRW-GAYGVLLAASP-TDTFIVTEGPGDGLTAVATGYNALIIRGASLVNSPELVAELAAG 263 Query: 177 FQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAV 236 + V L D + T + F +W Sbjct: 264 LKGKRVVLAGDNDTAGNGFTQRLAEGLAAHDVTA----QPLEIPFTGDDLTDWRA----- 314 Query: 237 HHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGK 296 A + D+ + D D + D + + Sbjct: 315 -RNVADFPASLTAAVNDALTAPGPDQPSVLPNVDEEDVDPTRDQVDRITDLYY------- 366 Query: 297 LIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIM 356 L SD + S + +G Y + WS + + + S + Sbjct: 367 ---DTLRQYGASDVQAAYLLSAFAEGQIKYAP---------GLGFFTWSGRVWERSDSKV 414 Query: 357 NFLVS-MKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIF 415 +V + + ++ D + + K L + Sbjct: 415 RNMVHFIGRSLNAAAKRKTDEKAPDQKEDPGEGLRKAAKGFTTRRKIDDCLAELASIPSV 474 Query: 416 SITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSG 475 ++ DS L ++G +DL TG+ + KE +T G + ++ + Sbjct: 475 HVSPTDFDSQPELLSFKNGTVDLRTGKIREHRKEDLLTYCLGLNYRPEASCPRWVSFLEE 534 Query: 476 YFES-EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534 F + E+ YF R VG G Q F + G G +GKS + + F + E Sbjct: 535 VFPNMPEMPSYFQRLVGYGTTGCTAEQCFAVLWGQGANGKSVATDTLTSIFRD----ITE 590 Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594 + +G + L GSR V+ SE ++ A +K++TG D ++AR Sbjct: 591 TTPFSTFEEKSSGGIPNDIAALRGSRFVMASEGESGKPMSEAVLKRVTGKDEISARFL-R 649 Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYT 652 + +F + N R D+ WRR +IPF + RD + +KL Sbjct: 650 QEFFTFKPTFLLMLATNFKPKFRGQDEGLWRRVKLIPFTRFFAPEERDHTLDRKL-LAEA 708 Query: 653 LEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWE-ES 711 W +KG + GL P+ + A ++ R+ +D + + + E + Sbjct: 709 EGIAAWAVKGAMEWFQYGLQ--DPQHIIDATKDYRRTSDALAGFFPGVLEFSDGANELTA 766 Query: 712 HSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771 ++Y+ + E E R+R + RT + + R+ K + G+++ Sbjct: 767 GQAYQAYTHWCEAEGLPARERWTRRTFLDAMAE--------RKVQRKNTAKGVALVGVRI 818 Query: 772 KPAFESVDDN 781 D Sbjct: 819 AADHADAPDG 828 >gi|15837307|ref|NP_297995.1| hypothetical protein XF0705 [Xylella fastidiosa 9a5c] gi|9105589|gb|AAF83515.1|AE003913_11 phage-related protein [Xylella fastidiosa 9a5c] Length = 845 Score = 307 bits (785), Expect = 5e-81, Method: Composition-based stats. Identities = 93/517 (17%), Positives = 186/517 (35%), Gaps = 52/517 (10%) Query: 288 TSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLT 347 + + +D N + + + +A+ ++W T Sbjct: 349 DAPATLAVERHDVPEALYLTTDKANAVRIAKHYGKRIMVSAE----------RWFVWEGT 398 Query: 348 LDKITASIMNFLV-SMKEDVFDLSEEPEDNNKNSKSPRFW-FNTDYRRQNVEENSKAKST 405 L + + + E+ +++ + + + S+ +ST Sbjct: 399 HWAHDTDAARLLTLKLSKIIRGEVEQWRTKRADTEKEKSKNAKIAAALEAWGKKSEMRST 458 Query: 406 AQSLEA--GSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEG 463 ++ A S+ + ++ LD+ L +G +DL TG E Y+T+ + Sbjct: 459 VEAAMALAKSMLVVKAERLDTDPWLLNCANGTVDLRTGTLKAHRPEDYMTRVVPVNYTPD 518 Query: 464 EPSQEFLDLVSGYFESE-----EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLM 518 + F ++ E + D+ R G G + + + G+G +GKSTL+ Sbjct: 519 AAAPVFRKTLARITCEEGQAQQPLSDFLQRWFGYCATGSVREHKLAVMYGMGRNGKSTLL 578 Query: 519 NLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKI 578 +LI G + A + + + L+G R+V ++ET+E + + Sbjct: 579 DLISGVLGRYAGVAAPGLLMD----AGHDRHPTEIADLVGRRMVTVNETSEGGILREGFV 634 Query: 579 KQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA- 637 KQ TGGD + AR + + + P + ++ N ++ D W R ++IPF+ Sbjct: 635 KQATGGDMLKARYMRAD-FFDFPPTHKLQLLTNHKPVIKGQDVGIWSRLMLIPFEARFGT 693 Query: 638 -----------NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEE 686 D +KL W + G + +GL P + A ++ Sbjct: 694 AEEVKAGVAQYPIDHKITEKL-AAEREGVLAWLVAGAVEWYREGLTP--PAIVRDASKDY 750 Query: 687 RQGTDTYQAWIDDCCDIGENLWEESHS-----LAKSYSEYREQELNYDRKRISTRTVTLN 741 + D +I D C +G E+ + L +Y+++ + Y +S Sbjct: 751 QTEQDRIAQFIKDECVLGMEHEEKLTAPMGGGLYPAYTQWCKDSGVYA---LSKTRFLDE 807 Query: 742 LKQKGFIGGIKREKIEK--EWKSKRI--IKGLKLKPA 774 LK + KR+ E K +R+ I+G+ L A Sbjct: 808 LK-RCVPKFRKRDAQETVAGGKRRRVLSIQGIALTDA 843 >gi|260579061|ref|ZP_05846960.1| P4 family prophage LambdaSa04, DNA primase [Corynebacterium jeikeium ATCC 43734] gi|258602812|gb|EEW16090.1| P4 family prophage LambdaSa04, DNA primase [Corynebacterium jeikeium ATCC 43734] Length = 754 Score = 307 bits (785), Expect = 5e-81, Method: Composition-based stats. Identities = 104/674 (15%), Positives = 214/674 (31%), Gaps = 73/674 (10%) Query: 147 EYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYT 206 + P + D ++ + F+FF + + +++ T Sbjct: 111 RFHVYFPINPVADADAYAGLKKQLAARFEFFDPNAIDAG---------RFIYGHDDPSVT 161 Query: 207 NREITAFLSCFGEEFYNGS-HDEWIPVVMAVHHETRGS----------------SKGKEI 249 E + + + + +W ++ +R + + +++ Sbjct: 162 VVEGERTIDAWLADAVDEDVFAQWDDATQSIEEGSRNATLSRFAGRLLIRLGTTDEARDL 221 Query: 250 ARRWSKQG-STYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFS 308 R + + E W + T + + + + + + +S Sbjct: 222 FDRKAARCNPPLPEAEVEAIWRS--ATRFAKTVENQPGY-VPPEDFEASLDS-VRPADYS 277 Query: 309 DAYNKAMFSIYKKGHFLYT-------ADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVS 361 D + + WY+ + ++ A L Sbjct: 278 DVGQAHALAKAYPDSLRSSEATDWLVYYDGVWYESAPAAQAVAQELTERQLAEAHELLED 337 Query: 362 MKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSL------------ 409 K+ + + + + FN ++ A +L Sbjct: 338 AKDQLAATGAAMLLASMSKAKAQAMFNAAQQKAFAAFEDAKTYAAYALKRRESRGITNCL 397 Query: 410 -EAGSIFSITSDLLDSSSRFLGEQDGILDLETG--QKVKPTKELYITKSTGTPFVEGEPS 466 EA + T + LD+ L G DL G + +TK T + + Sbjct: 398 KEARPMLLTTPEQLDADPYLLNTPSGTYDLRHGAASRRDHDPADLVTKQTSLDPG-TDGA 456 Query: 467 QEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF 525 + + + +F E++ Y R VG+A +G + + G G +GKST N I Sbjct: 457 HLWQEALEVFFQGDAELIAYVQRIVGLAAIGQVFVEALVIAYGDGRNGKSTFWNTIARVL 516 Query: 526 GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGD 585 G + + P L G R++I +E+ E ++ + +KQ+ D Sbjct: 517 GTYAGNMSADVLTIGGMR----NVKPELAEAKGKRLIISAESEEGVRMSTSVVKQLASTD 572 Query: 586 CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDASF 643 + A Y ++ S T + N V D WRR IVIPF+ I ++ Sbjct: 573 QIYAEKKYKAPFA-FTPSHTLTLYTNHLPRVGAMDAGIWRRLIVIPFEAKIEGASDIKNY 631 Query: 644 AQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDI 703 A L T+ W ++G + ++ + P ++A R+ + + ++D CD+ Sbjct: 632 ADYLYTQAGGAILAWIMEGARLIHAEDYHLKAPARVVEASAAYREENNWFAQFLDANCDL 691 Query: 704 GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSK 763 L E + L ++Y + + R + ++ GF K Sbjct: 692 DPGLSERAGDLYQAYRAWAMSTSGWARPMV---DFNATVEHHGFT--------RKRTMHG 740 Query: 764 RIIKGLKLKPAFES 777 + GL LK F++ Sbjct: 741 MFVHGLALKNEFDN 754 >gi|15839095|ref|NP_299783.1| hypothetical protein XF2505 [Xylella fastidiosa 9a5c] gi|9107708|gb|AAF85303.1|AE004058_4 phage-related protein [Xylella fastidiosa 9a5c] Length = 819 Score = 306 bits (784), Expect = 7e-81, Method: Composition-based stats. Identities = 88/513 (17%), Positives = 179/513 (34%), Gaps = 50/513 (9%) Query: 288 TSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLT 347 + + +D N + + + + D ++W T Sbjct: 323 DAPATLAVERHDVPEALYLTTDMANAVRIAKHYGKRLMVSGD----------RWFVWEGT 372 Query: 348 LDKITASIMNFLV-SMKEDVFDLSEEPEDNNKNSKSPRFW-FNTDYRRQNVEENSKAKST 405 L + + + E+ +++ + + + S+ +ST Sbjct: 373 HWAHDTDAARLLALKLSKIIRGEVEQWRTKRADTEKEKSKNAKIAAALEAWGKRSEMRST 432 Query: 406 AQSLEA--GSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEG 463 +++ A + ++ LD+ L +G +DL TG E Y+T+ + Sbjct: 433 VEAMMALAKCMIAVKPKQLDTDPWLLNCANGTVDLRTGTLKAHRPEDYMTRVVPVNYTPD 492 Query: 464 EPSQEFLDLVSGYFESE-----EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLM 518 + F + E + D+ R G G + + + G+G +GKSTL+ Sbjct: 493 AAAPVFRKTLERITCEEGQAQQPLSDFLQRWFGYCATGSVREHKLAVMYGMGRNGKSTLL 552 Query: 519 NLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKI 578 +LI G + A + + + L+G R+V ++ET+E + + Sbjct: 553 DLISGILGRYAGVAAPGLLMD----AGHDRHPTEIADLVGRRMVTVNETSEGGLLREGFV 608 Query: 579 KQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA- 637 KQ TGGD + AR + + + + ++ N ++ D W R ++IPF Sbjct: 609 KQATGGDMLKARYMRAD-FFDFQPTHKLQLLTNHKPVIKGQDVGIWSRLMLIPFKARFGT 667 Query: 638 -----------NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEE 686 D +KL W + G + +GL+ PE+ A ++ Sbjct: 668 AEEVEAGIAQYPIDHKITEKL-AAEREGVLAWLVAGAVEWYREGLNP--PEIVRDASKDY 724 Query: 687 RQGTDTYQAWIDDCCDIGENLWEESHS-----LAKSYSEYREQELNYDRKRISTRTVTLN 741 + D +I D C +G E+ + L +Y+++ + Y +S Sbjct: 725 QTEQDRVTQFISDECVLGMEHEEKLTAPMGGGLYPAYTQWCKDSGVYA---LSKVRFLGE 781 Query: 742 LKQKGFIGGIKREKIEKEWKSKR---IIKGLKL 771 L++ K E +R +I+G+ L Sbjct: 782 LERCVPKFRKKHVYETPEGGKRRMFLVIQGIAL 814 >gi|227875063|ref|ZP_03993208.1| phage-associated protein [Mobiluncus mulieris ATCC 35243] gi|304390306|ref|ZP_07372259.1| P4 family prophage LambdaSa04 [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|306817350|ref|ZP_07451095.1| P4 family prophage LambdaSa04 protein [Mobiluncus mulieris ATCC 35239] gi|227844341|gb|EEJ54505.1| phage-associated protein [Mobiluncus mulieris ATCC 35243] gi|304326062|gb|EFL93307.1| P4 family prophage LambdaSa04 [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304649791|gb|EFM47071.1| P4 family prophage LambdaSa04 protein [Mobiluncus mulieris ATCC 35239] Length = 753 Score = 306 bits (784), Expect = 9e-81, Method: Composition-based stats. Identities = 130/747 (17%), Positives = 249/747 (33%), Gaps = 82/747 (10%) Query: 62 EQPLYAFDID--SKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTT 119 DID + T + L + + + + K K Sbjct: 58 SSDCVVMDIDNDHTETHTDWITPEKLGELMSG-VEFMTATSRNHM----------KAKGV 106 Query: 120 ESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQE 179 S + ++ V + IH T + + ++ + + +F Sbjct: 107 LSARP--------RFHVYFPIHTITNAD---EYAGLKHRLASRFGFFDRNALDAGRFIYG 155 Query: 180 ITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHE 239 + +V + W + + A GE N + + V+ + + Sbjct: 156 ASNAVVTAHEGDQLLDAWLDAADEIDVFAAFDASTLVIGEGSRNATLSRFAGRVLIRYGQ 215 Query: 240 TRGSSKGKEIARRWSKQGSTYDEENFNYKWDT---FDFEEIGDTA-KKRSTFTSLFYHHG 295 T + + R+ + +E W++ F + D + + +L Sbjct: 216 TDQARDLFD--RKANLCEPPLNEGELQTIWNSACRFASKVASDPSYLPPEAYEAL----- 268 Query: 296 KLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWS----LTLDKI 351 GL FSD + Y+ TK W D + ++ Sbjct: 269 ----AGLRPDDFSDVGQADTLAGEYANKIRYSLATK-WLVYDHGVWDENDLSAQGVVQEL 323 Query: 352 TASIMNFLVSMKEDVFD-----------------LSEEPEDNNKNSKSPRFWFNTDYRRQ 394 T+ + + + + N + + W + + Sbjct: 324 TSRQLEEAQHLIATTWQDMVSTGADVVMASASSKARGLAKLNPAQVAAFKAWDESKSYHK 383 Query: 395 NVEENSKAKSTAQSL-EAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYIT 453 V +++ +L EAG I + LD L G DL + +T Sbjct: 384 FVLSRRLSRNITATLKEAGPILQVRVRDLDVDPYQLNTPAGTWDLRDSSSHEHNPADLLT 443 Query: 454 KSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGS 512 K T + +Q + D + +F E++ Y R VG+A +G + + G G + Sbjct: 444 KQTAVGPSDEG-AQIWADALDVFFQGDVELIGYVQRIVGLAAIGQVFVEALVIAYGDGRN 502 Query: 513 GKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDE 572 GKST N I G + + + R P L G R++I +ET E Sbjct: 503 GKSTFWNTIARVLGTYSGTISADALTVGVRR----NVKPELAEARGKRLLIAAETEEGMR 558 Query: 573 INAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF 632 ++ + +KQ+ D ++A + + ++ S T + N V D WRR IVIPF Sbjct: 559 LSTSNVKQLASTDQISAEKKFKDPFA-FTPSHTLVLYTNHLPRVGAMDAGIWRRLIVIPF 617 Query: 633 DKPIA-NRD-ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGT 690 + I + D ++A L W ++G + S+G + P ++A + ++ Sbjct: 618 NATIEGDTDVKNYADHLYEHAGGAILSWIMEGARLIHSEGYKLTPPPQVVQASQAYKEDN 677 Query: 691 DTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGG 750 D + +++D CD+ + L E + L ++Y + + + R + +Q GF Sbjct: 678 DWFSQFLEDSCDVEDGLSERAGDLYQTYRAWAQNTSGWARPMV---DFNAACEQAGFE-- 732 Query: 751 IKREKIEKEWKSKRIIKGLKLKPAFES 777 K+ KS + GL L F S Sbjct: 733 ------RKKTKSGIRVYGLALTSEFNS 753 >gi|197303501|ref|ZP_03168540.1| hypothetical protein RUMLAC_02223 [Ruminococcus lactaris ATCC 29176] gi|197297499|gb|EDY32060.1| hypothetical protein RUMLAC_02223 [Ruminococcus lactaris ATCC 29176] Length = 738 Score = 306 bits (783), Expect = 9e-81, Method: Composition-based stats. Identities = 134/749 (17%), Positives = 240/749 (32%), Gaps = 77/749 (10%) Query: 63 QPLYAFDID--SKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120 + DID DE E L P V P ++KEG + Sbjct: 33 SDVIVMDIDNDHTDEPMEWITPKNLEELF--PNVEYLLAPSRHHL--LDKEGKSARPRYH 88 Query: 121 STQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEI 180 +I G+Y + ++ + + + + + Sbjct: 89 MYFPISEITDAGRYANLKKAIQS------VYSFFDGNALDAARFIFGAECDEVIYHDGWM 142 Query: 181 TVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIP--VVMAVHH 238 TV D + + + + GS + + + Sbjct: 143 TVDEEVD------------IFDIEEEDFDSEMSGGKSTGPILEGSRNNTMSRFAGRILKK 190 Query: 239 ETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLI 298 + K + W++ + + + + ++ Sbjct: 191 YGDTEKAHEAFLEHARKCDPPLPDSELKSIWNS-AVKFYRKSIVTQDGYVPPEEYNADFE 249 Query: 299 PKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNF 358 L +SD + YT+ T + + D ++ F Sbjct: 250 GATLKPEDYSDIGQAKILVREYGEELKYTSATD-FLRFDGECWREDKQLA---IGAVEEF 305 Query: 359 LVSMKEDVFDLSEEPEDNNKNSKSPRFWFNT------------------------DYRRQ 394 L +D D E +++ P+ Y + Sbjct: 306 LDLQLQDAMDEVARVEKALEDAGVPKASIQAGPKELLKEVDGQLLPLVYMLMGAQTYLKF 365 Query: 395 NVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETG--QKVKPTKELYI 452 + + + A + +I+ LD + DL G + I Sbjct: 366 VQKRRDYKYIVSAANTAKPMIAISVSDLDKDENLINTPYATFDLRKGLAGEQPHDPGDLI 425 Query: 453 TKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGG 511 TK T E Q +LD + +F + ++++DY VGMA +G + I G G Sbjct: 426 TKITACSPGEEGK-QIWLDALKLFFCKDQKLIDYVQETVGMAAIGKVYQEHMIIAYGGGA 484 Query: 512 SGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEND 571 +GKST N I GN + + M + P + L G R++I SE E Sbjct: 485 NGKSTFWNTIFRVLGNYAGKLSAEALTMNCKR----NVKPEMAELKGKRLIISSEMEEGM 540 Query: 572 EINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIP 631 +N A +KQ+ D + A Y + +S S T + N V DD WRR IVIP Sbjct: 541 RLNTAVVKQLCSTDEIQAEKKYKDPFS-FVPSHTLVLYTNHLPKVGANDDGIWRRLIVIP 599 Query: 632 FDKPIANRD--ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQG 689 F+ I + ++A L W ++G K I K D+P+V A + R+ Sbjct: 600 FNAKITGKSDIKNYADYLFEHAGPAIMSWIIEGAKKAIDKEFHTDLPDVVEAAIKAYRED 659 Query: 690 TDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIG 749 D ++++CC++ + E+S L ++Y + Q Y R ST ++ + G+ Sbjct: 660 NDWLGQFLEECCEMDPSYKEKSGELYQAYRAHCMQNGEYIR---STTDFYSSMDKAGYNR 716 Query: 750 GIKREKIEKEWKSKRIIKGLKLKPAFESV 778 K ++ + GLKLK + + Sbjct: 717 IRKNTGVQ--------VVGLKLKEGQDFL 737 >gi|308370271|ref|ZP_07420875.2| phage/plasmid primase, P4 family, C- domain protein [Mycobacterium tuberculosis SUMu002] gi|308378333|ref|ZP_07482245.2| phage/plasmid primase, P4 family, C- domain protein [Mycobacterium tuberculosis SUMu009] gi|308324799|gb|EFP13650.1| phage/plasmid primase, P4 family, C- domain protein [Mycobacterium tuberculosis SUMu002] gi|308352847|gb|EFP41698.1| phage/plasmid primase, P4 family, C- domain protein [Mycobacterium tuberculosis SUMu009] Length = 501 Score = 306 bits (783), Expect = 1e-80, Method: Composition-based stats. Identities = 98/432 (22%), Positives = 158/432 (36%), Gaps = 28/432 (6%) Query: 340 NVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEEN 399 + W + E LS+ D + + E Sbjct: 89 GWHSWDGRRWAADDRGEAKRAVLAELRQALSDSLNDKELRADVRKC-----------ESA 137 Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTP 459 S A F+ T LDS L +G LDL T + ITK Sbjct: 138 SGVAGVLDLAAALVPFAATVADLDSDPHLLNVANGTLDLHTLKLRPHAPADRITKICRGA 197 Query: 460 FVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMN 519 + S + ++ E V + R G+ LLG + + GVG +GKS Sbjct: 198 YQSDTESPLWQAFLTRVLPDEGVRGFVQRLAGVGLLGTVREHVLAILIGVGANGKSVFDK 257 Query: 520 LIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIK 579 I+YA G+ + + G+ + L G R V +SE+ ++ + + IK Sbjct: 258 AIRYALGDYACTAEPDLFMHRENAHPTGE-----MDLRGVRWVAVSESEKDRRLAESTIK 312 Query: 580 QMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA-- 637 ++TGGD + AR + E S TP ++ N V D A WRR V+PF+ I Sbjct: 313 RLTGGDTIRARKM-RQDFVEFTPSHTPLLITNHLPRVPGDDTAIWRRIRVVPFEVVIPAD 371 Query: 638 NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWI 697 +D +L+ W + G Y GL P+ L A R+ +DT + +I Sbjct: 372 EQDRELDARLQL-EADSILSWAVAGWSDYQRIGL--SQPDAVLAATSNYREDSDTIKRFI 428 Query: 698 -DDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKI 756 D+C L + L +++ +R QE IS + +L G+ K Sbjct: 429 DDECVTSSPVLKATTTHLFEAWQRWRVQEG---VPEISRKAFGQSLDTHGYPVTDKAR-- 483 Query: 757 EKEWKSKRIIKG 768 + W++ ++G Sbjct: 484 DGRWRAGIAVRG 495 >gi|304389860|ref|ZP_07371819.1| P4 family prophage LambdaSa04 [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304327036|gb|EFL94275.1| P4 family prophage LambdaSa04 [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 747 Score = 306 bits (783), Expect = 1e-80, Method: Composition-based stats. Identities = 114/630 (18%), Positives = 210/630 (33%), Gaps = 63/630 (10%) Query: 175 KFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVM 234 +F P V + W + + Q GE N + + V+ Sbjct: 151 RFIYGTPNPQVTVHEGDQLLDAWLDAADEQDVFAAFDQSTLVIGEGSRNATLSRFAGRVL 210 Query: 235 AVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDF--EEIGDTAKK--RSTFTSL 290 + +T + + R+ S + W++ ++ + L Sbjct: 211 IRYGQTDQARDLFD--RKASLCEPPLSDSELATIWNSACRFATKVAANPDYLPPEAYAQL 268 Query: 291 FYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIW------ 344 L F+D + + Y+ T AW + Sbjct: 269 ---------TSLKPEDFTDVGQAMVLASEYANRICYSPAT-AWMVYEDGVWEENEPKVQH 318 Query: 345 -------------SLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDY 391 L+ I+ V+ ++ N Sbjct: 319 VVQELTTRQLEQVDAELEAISQRASELGVTAMLMAMTKTKALGMFNPKQAQAYRELTAAQ 378 Query: 392 RRQNVEENSKAKSTAQSLE--AGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKE 449 Q ++ T Q++ A + I ++LD+ + L G DL G + Sbjct: 379 EWQKFIYKCRSDRTIQAVMRQARPLTLINPEILDADAYLLNTPTGTWDLRDGSRRDHDPA 438 Query: 450 LYITKSTGTPFVEGEPSQEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRG 508 +TK T T + +Q + D + F +E++ Y R G+A +G + I G Sbjct: 439 DMLTKQTATDPSDIG-AQVWRDSLELTFGGDQELIAYVQRVCGLAAIGKVLIEALIIAYG 497 Query: 509 VGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN 568 G +GKST N I G+ + I + A + R++I E + Sbjct: 498 DGNNGKSTFWNTIARVLGSYSETISAEVLIAGKK----NNAKHEMAETRARRLLIAGEND 553 Query: 569 ENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYI 628 E ++ + D + A Y + +S S T + N V D WRR + Sbjct: 554 EGVRLSTS------STDKIAAEKKYKDPFS-FTPSHTLVLYTNHLPKVGATDTGIWRRLV 606 Query: 629 VIPFDKPI-ANRD-ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEE 686 VIPF + I + D ++A L + W ++G + ++ + P ++A E+ Sbjct: 607 VIPFTQTIQPSVDVKNYADHLFEQAGGAVLAWIMEGARLIHAENYRLVPPACVVEASEKY 666 Query: 687 RQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746 R D + ++D+CC++ L E+S +L SY + Y R ST +++ G Sbjct: 667 RAANDWFAHFLDECCELDPGLEEKSGALYSSYRAWALSRSEYVR---STSDFYAAVEKNG 723 Query: 747 FIGGIKREKIEKEWKSKRIIKGLKLKPAFE 776 F + ++I+GL+L FE Sbjct: 724 FTS--------RRNNRGKLIRGLRLLDEFE 745 >gi|53803176|ref|YP_115052.1| hypothetical protein MCA2648 [Methylococcus capsulatus str. Bath] gi|53756937|gb|AAU91228.1| prophage LambdaMc01, DNA primase, P4 family [Methylococcus capsulatus str. Bath] Length = 755 Score = 306 bits (782), Expect = 1e-80, Method: Composition-based stats. Identities = 93/478 (19%), Positives = 161/478 (33%), Gaps = 46/478 (9%) Query: 299 PKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNF 358 P + +D F+ + Y A AW +W + +++ Sbjct: 309 PTQEPSVWATDDALALAFTSRYAEDWRYCA---AW-----GKWLVWDGRRWQADETLLVH 360 Query: 359 LVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSIT 418 + + E + + + + A++ + T Sbjct: 361 -----HLIRAICREAALKADSHRLA-------AKLAASSTVGGVERLARTDR---RHAST 405 Query: 419 SDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE 478 S+ D+ L GI+DL+TG+ + +TK + + Sbjct: 406 SEEWDADLFALNTPSGIVDLKTGRIKPHDRRERMTKLATA--TPHGDCARWRAFLEDITG 463 Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537 + Y R VG L G A + G G +GKS +N + G+ + Sbjct: 464 GDTALQAYLQRMVGYCLTGATSAHALFFLYGTGANGKSVFVNTLATILGDYATSAPMDTF 523 Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597 + + L L G+R V ET + N +K+K +TGGD ++AR + Sbjct: 524 ME----ARGDRHPTDLAGLRGARFVSSIETEQGRRWNESKVKAITGGDKVSARFM-RQDF 578 Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655 E F I N +RN D+A RR +IPF I RD +KL Sbjct: 579 FEYLPQFKLVIAGNHKPAIRNVDEAMKRRLHLIPFTVTIPPEKRDGQLTEKL-LAERDGI 637 Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLA 715 W ++G A+ GL+ P + A EE D ++D+ E + Sbjct: 638 LAWAVEGCLAWQRDGLNP--PASVVSATEEYFDEEDAIGDFLDEEAQRFEQARVAVADVF 695 Query: 716 KSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773 + + E+ + Y ++R + L +GF + + + GL LKP Sbjct: 696 QRWQEWATRRGEY---VGTSRWLAQQLANRGFGRA-------RLHGGVKGLAGLSLKP 743 >gi|207725439|ref|YP_002255835.1| bacteriophage-related protein [Ralstonia solanacearum MolK2] gi|206590675|emb|CAQ37637.1| bacteriophage-related protein [Ralstonia solanacearum MolK2] Length = 769 Score = 306 bits (782), Expect = 1e-80, Method: Composition-based stats. Identities = 92/471 (19%), Positives = 166/471 (35%), Gaps = 45/471 (9%) Query: 308 SDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVF 367 ++ F+ + Y + W +W+ + ++ + + Sbjct: 327 TEDGLATAFTRRYGDDWRYCS---LW-----GKWLVWTGVRWNHDQLL--YVTHLSRGI- 375 Query: 368 DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSR 427 ++ T ++ + +S + + + + T+D D+ Sbjct: 376 ------------CRAASLKAQTPRQKAKLAGSSTIAAVEKIARSDPKHAATADEWDADVW 423 Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPFV--EGEPSQEFLDLVSGYFE-SEEVMD 484 L G++DL TG +E +TK T GE +L + + ++ Sbjct: 424 ALNTPGGVVDLRTGNLRAHRREDRMTKVTTATPRGRNGEGCPSWLAFIGDITGGNTDLAA 483 Query: 485 YFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544 Y R G AL G + + G G +GKS +N + G+ V A + + Sbjct: 484 YLQRMAGYALTGSTQEHALFFLYGTGANGKSVFVNTLATILGDYAVNAAMDTFMETR--- 540 Query: 545 EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604 A + + L G+R V ET + +K+K +TGGD ++AR + E F Sbjct: 541 -ADRHPTDMAGLRGARFVAAIETEQGRRWAESKVKNLTGGDKISARFM-RQDFFEFFPQF 598 Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKG 662 F+ N +RN D+A RR +IPF + RD QKL W ++G Sbjct: 599 KLFVAGNHKPAIRNIDEAMKRRLHLIPFTITVPPERRDKHLQQKL-LAERDGILAWAVQG 657 Query: 663 VKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYR 722 + G + P+ L A EE + D W+D+ C N + L + ++ Sbjct: 658 CLDWQRLG-RLQPPQQVLDATEEYFEAEDALGRWLDERCVREANAKTLTAELFNDWKQWA 716 Query: 723 EQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773 E + S + L +G + R +G+ LK Sbjct: 717 EAAGEFA---GSQKRFADLLLIRGVEK-------WRNTAGLRGFRGVGLKH 757 >gi|170739471|ref|YP_001768126.1| hypothetical protein M446_1166 [Methylobacterium sp. 4-46] gi|168193745|gb|ACA15692.1| phage/plasmid primase, P4 family [Methylobacterium sp. 4-46] Length = 467 Score = 306 bits (782), Expect = 1e-80, Method: Composition-based stats. Identities = 97/473 (20%), Positives = 169/473 (35%), Gaps = 49/473 (10%) Query: 308 SDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVF 367 ++ F+ +G Y D+K W W+ T+ + T + +E Sbjct: 31 TEDGVALEFAKQFEGFLRYNVDSKTW--------LHWTGTIWE-TDKVKRAFQYARELAR 81 Query: 368 DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSR 427 +++E + R + + A + + + D Sbjct: 82 RVAQEAPG---------------HLRVTHSKVAFAANVETFAKTDPRLVTVYEDWDLDPY 126 Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYF 486 LG G +DL TG+ + IT++T + +FL + F E + + Sbjct: 127 LLGTPGGTIDLRTGELRPALQSDMITRTTAVAPADTAECPQFLQFLDETFGGDTETVRFL 186 Query: 487 TRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEA 546 + G L G QRF+ G GG+GK L+ + + A + Sbjct: 187 QQWCGYCLTGDTTEQRFVFGEGKGGNGKGVLIGTALGILKDYATVVAMEALTAAK----H 242 Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 + + L G R+V SET E A+IK +TGGD + AR + + E F Sbjct: 243 DRHPTEIAALRGKRLVTASETEGGREWAEARIKALTGGDRIKARFMRQDEF-EFLPQFKL 301 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVK 664 F++ N +RN D A RR IV+PF+ + RD +KLE +W + G Sbjct: 302 FVMGNNRPSLRNVDQAMRRRLIVVPFNNDVPKEKRDPDLPKKLE-AEWPGILRWMIDGCL 360 Query: 665 AYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGEN---LWEESHSLAKSYSEY 721 + + + P+ EE G D ++ + CD+ L S L ++ Y Sbjct: 361 DWQAN--RLISPKAVEDNTEEYFSGQDLLGQFLAEKCDLDPGNDRLTVGSTELYNAWKSY 418 Query: 722 REQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPA 774 + + + + +GF + + R G++LKP Sbjct: 419 ALVNGEEAE---AQKVFSPKIAGRGFP--------QIRGATGRGFSGIRLKPC 460 >gi|71897551|ref|ZP_00679796.1| Phage/plasmid primase P4, C-terminal [Xylella fastidiosa Ann-1] gi|71732454|gb|EAO34507.1| Phage/plasmid primase P4, C-terminal [Xylella fastidiosa Ann-1] Length = 843 Score = 306 bits (782), Expect = 1e-80, Method: Composition-based stats. Identities = 92/511 (18%), Positives = 181/511 (35%), Gaps = 52/511 (10%) Query: 294 HGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITA 353 + +D N + + + +A+ ++W T Sbjct: 353 AVERHDVPEALYLTTDTANAVRIAKHYGKRLMVSAE----------RWFVWEGTHWAHGM 402 Query: 354 SIMNFLV-SMKEDVFDLSEEPEDNNKNSKSPRFW-FNTDYRRQNVEENSKAKSTAQSLEA 411 L + + + E+ +++ + + + S+ +ST ++ A Sbjct: 403 DAARLLALKLSKIIRGEVEQWRTKRADTEKEKSKNAKIAAALEAWGKKSEMRSTVEAAMA 462 Query: 412 --GSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF 469 S+ + ++ LD+ L +G +DL TG E YIT+ + + F Sbjct: 463 LAKSMLVVKAERLDTDPWLLNCTNGTVDLRTGTLKAHRPEDYITRVVPVNYTPDAAAPVF 522 Query: 470 LDLVSGYFESE-----EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524 ++ E + D+ R G G + + + G+G +GKSTL++LI Sbjct: 523 KKTLARITCEEGQAQQPLSDFLQRWFGYCATGSVREHKLAVMYGMGRNGKSTLLDLISGI 582 Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGG 584 G+ + A + + + L G R++ ++ET+E + +KQ TGG Sbjct: 583 LGSYAGVAAPGLLMDGG----HDRHPTEIADLAGRRMMTVNETSEGGILREGFVKQATGG 638 Query: 585 DCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA------- 637 D + AR + + E + ++ N ++ D W R ++IPF+ Sbjct: 639 DSLKARHMRSD-FFEFQPTHKLQLLTNHKPVIKGQDVGIWSRLMLIPFEARFGTAEEVEA 697 Query: 638 -----NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDT 692 D +KL W + G + GL+ P + A ++ + D Sbjct: 698 GVAQYPIDHKITEKL-AAEREGVLAWVIAGAVEWYRDGLNP--PGIVRDASKDYQTEQDR 754 Query: 693 YQAWIDDCCDIGENLWEESHS-----LAKSYSEYREQELNYDRKRISTRTVTLNLKQKGF 747 +I D C +G E + L +Y+++ + Y +S L ++ Sbjct: 755 VTQFIKDECVLGMEHEEPLTAPMGGGLYPAYTQWCKDSGVYA---LSKTRFLGEL-ERCV 810 Query: 748 IGGIKREKIEKEWKSKRI----IKGLKLKPA 774 KR+ E KR I+G+ L A Sbjct: 811 PKFRKRDVKETVGTGKRRRVLSIQGIGLVDA 841 >gi|300764697|ref|ZP_07074688.1| hypothetical protein LMHG_11071 [Listeria monocytogenes FSL N1-017] gi|300514583|gb|EFK41639.1| hypothetical protein LMHG_11071 [Listeria monocytogenes FSL N1-017] Length = 747 Score = 306 bits (782), Expect = 2e-80, Method: Composition-based stats. Identities = 128/666 (19%), Positives = 227/666 (34%), Gaps = 68/666 (10%) Query: 147 EYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYT 206 + P +D + ++ ++ F +F + + S+ ++ T Sbjct: 111 RFHVYFPIPATTDKDEYVELKKQIQSEFPYFDNNAMDAARLLFGTPNSEVEIYEGSKLIT 170 Query: 207 N---REITAFLSCFGEEFYNGSHDEWIP-VVMAVHHETRGSSKGKEIARRWSKQG-STYD 261 + ++ A E GS + + + + + SK+ Sbjct: 171 DFLEDDLFADWDNAQSEISEGSRNSSMSHIAGKLIKRYGATEDTYHKYLEQSKKCNPPLP 230 Query: 262 EENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKK 321 EE W++ G K++ + ++ L L + +SD + + + Sbjct: 231 EEELKAIWNS--AVNFGKKVKQQEGYIPPEQYNSDL---SLEPTDYSDLGQATVLAREYE 285 Query: 322 GHFLYTADTKAWYKKDKNNVYIWSLTLDKITA-----------------SIMNFLVSMKE 364 Y+ T +++ + + + S KE Sbjct: 286 CKLHYSPSTG---------YLVYNGSYWEESKPKAQGVIHALTERQLEESETEIEKRTKE 336 Query: 365 DVFDLSEEPEDNNKNSKSPRFWFNTDY------------RRQNVEENSKAKSTAQSLEAG 412 V + + + K+ + ++ V+ ++ EA Sbjct: 337 MVSNGAFGVLASVGPKKAVTMFNTAQRHSFDLYQHAQEYKKFAVKRRDSKYLSSALTEAK 396 Query: 413 SIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDL 472 + I LLD + L DL TG+ E YITK T + Q +LD Sbjct: 397 PMLEIEQRLLDVNEFLLNTPTATFDLRTGKSQDHNSEDYITKQTECAPSD-ANQQIWLDA 455 Query: 473 VSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVI 531 ++ F +E++DY VG+A +G + I G G +GKST N+I GN Sbjct: 456 LNTIFVGDQELIDYVQMIVGLAAIGKVYVEALIISYGEGRNGKSTFWNVISRVLGNYSGS 515 Query: 532 NAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARL 591 + Q R P L G R++I +E E +N + IKQ+ D + A Sbjct: 516 ISADILTSQIRR----NVKPELAEAKGKRLLIAAELEEGMRLNTSNIKQLCSTDEIAAEK 571 Query: 592 NYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD--ASFAQKLET 649 Y + + + + T + N V D WRR IVIPF I ++A L Sbjct: 572 KYKDPF-KYVPTHTLVLYTNHLPKVGAIDKGTWRRLIVIPFLATIDGNKDIKNYADYLFE 630 Query: 650 KYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWE 709 +W L G K I+ + +P+V A E + D ++D+CC+ + E Sbjct: 631 NAGGAILQWILDGAKKVIAADFHLTVPQVVANAISEYKTANDWLGHFLDECCETAVDFEE 690 Query: 710 ESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGL 769 +S L Y + + Y R S+ L+ GF + I GL Sbjct: 691 KSGELYAEYRAFCTRTGEYIR---SSADFYTALEAGGFK--------RRRTNKGNKIVGL 739 Query: 770 KLKPAF 775 +LK F Sbjct: 740 QLKSEF 745 >gi|311977583|ref|YP_003986703.1| putative helicase [Acanthamoeba polyphaga mimivirus] gi|160369783|sp|Q5UQ22|YL207_MIMIV RecName: Full=Putative helicase L207/L206 gi|308204253|gb|ADO18054.1| putative helicase [Acanthamoeba polyphaga mimivirus] Length = 960 Score = 305 bits (781), Expect = 2e-80, Method: Composition-based stats. Identities = 104/603 (17%), Positives = 192/603 (31%), Gaps = 52/603 (8%) Query: 163 PLLSEEDVEYLFKFFQEITVPLVKDKKSIIPS---KTWTNNNNRQYTNREITAFLSCFGE 219 PL + ++ + + T K + + + + L Sbjct: 315 PLAIDAKLKKIKEKINNNTNNTNTHKNTAELGDHHFNFIKAVSEETLVE--AKNLVKLFS 372 Query: 220 EFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGS-TYDEENFNYKWDTFDFEEIG 278 + W V + + + E +SK+ + +E W + + Sbjct: 373 VQRATDYHTWYQVGRCLSNI---DHRLLEDWITFSKKCPSKFKKEECERLWRNMNMKPSN 429 Query: 279 ---------DTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTAD 329 + + + + K + + K + YK + + Sbjct: 430 YTMATLHYFASKDDPDKYFEMKKLKIDGLIKEGMEASH-HTIAKLLIEKYKFIYKCASIK 488 Query: 330 TKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEP--EDNNKNSKSPRFWF 387 WY+ + + L E +D + Sbjct: 489 NGIWYEFRNHRWIEIDSAYTLRNLISEVLVNEYANRQRILFGEATRQDAENKKEKFNDAV 548 Query: 388 NTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPT 447 N + + N+ + + LD ++ +G ++G+ DLE G Sbjct: 549 NITKVIKQLNNNTFKNGVIKECADIAYDPNFLRNLDENNYLIGFENGVFDLEAGIFRDGC 608 Query: 448 KELYITKSTGTPFVEGEPSQE----FLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRF 503 + I+ T ++E + E + + + +Y + L G N + F Sbjct: 609 PDDCISLCTNYKYIEIDEDDETFKNINGFLKKIQPDKSMREYILTLLSTCLSGTNSEESF 668 Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVI 563 + G G +GKS LM L+KY G+ Y + + + R + A+P L G R Sbjct: 669 YVLTGSGANGKSKLMELLKYTLGDLYK-PMDIRLLTEKRSSSS-SASPELADKKGIRACP 726 Query: 564 ISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAW 623 E +DEIN +K TGGD +TAR Y F PF++ N+ +++ DD Sbjct: 727 FDEPKASDEINTGFMKIFTGGDTITARALYKEP-IYFKPQFKPFLLCNELPTIKSDDDGT 785 Query: 624 WRRYIVIPFDKPIANR-------------------DASFAQKLETKYTLEAKKWFLKGVK 664 WRR VIPF D S ++KL + LK + Sbjct: 786 WRRLKVIPFLSKFIKHSEATKKMKKEGLPKNHFWADTSLSEKLP-DWKQGFMCLLLKYFR 844 Query: 665 AYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLW--EESHSLAKSYSEYR 722 Y GL P++ + E R+ D +Q +I D +N L ++ E+ Sbjct: 845 KYRKHGL--IHPKLVTQHTVEYRKKCDVFQDFIGDYLVRVDNTKKGISVMDLYQNMREWY 902 Query: 723 EQE 725 + Sbjct: 903 KSN 905 >gi|284048433|ref|YP_003398772.1| phage/plasmid primase, P4 family [Acidaminococcus fermentans DSM 20731] gi|283952654|gb|ADB47457.1| phage/plasmid primase, P4 family [Acidaminococcus fermentans DSM 20731] Length = 372 Score = 305 bits (780), Expect = 2e-80, Method: Composition-based stats. Identities = 98/375 (26%), Positives = 156/375 (41%), Gaps = 24/375 (6%) Query: 411 AGSIFSITSDLLDSSSRFLGEQDGILDLETGQK--VKPTKELYITKSTGTPFVEGEPSQE 468 A + ++ LD L + DL G + + ITK T + + Sbjct: 16 AKPMLALDVSELDYDPELLNTPEATYDLTQGTRGSHPHDPDDLITKITACSPGDKG-MEL 74 Query: 469 FLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 + + + +F E++ Y + VGMA +G A++ I G G +GKST N I G Sbjct: 75 WQESLDLFFCHDRELIQYVQQIVGMAAVGRVYAEQMIIAYGGGANGKSTFWNTIARVLGT 134 Query: 528 QY-VINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDC 586 I+A+A + R P + L G R++I SE E +N +KQ+ D Sbjct: 135 YSGKISADALTMSCKR-----NVKPEMAELKGKRLIIASELEEGQRLNTGMVKQICSIDP 189 Query: 587 MTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD--ASFA 644 + A Y + + S T + N V DD WRR IVIPF+ I + +++ Sbjct: 190 IEAEKKYKDPFH-FVPSHTLVLYTNYLPKVTANDDGTWRRLIVIPFNAKITGKSDIKNYS 248 Query: 645 QKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIG 704 L KW ++G + I KG ++ P+ A E+ R+ D +++D C+I Sbjct: 249 DYLFEHAGPAILKWVIEGAETAIRKGFKIEEPKAVRNAVEKYREDNDWLGQFLEDHCEID 308 Query: 705 ENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKR 764 + E S L + Y Q Y R ST NL++ GF R+ Sbjct: 309 PSFTERSGKLYQHYRVICLQSGEYIR---STTDFYGNLEKAGFFRHRTRD--------GS 357 Query: 765 IIKGLKLKPAFESVD 779 ++GLKLK + +D Sbjct: 358 FVRGLKLKEGQDFLD 372 >gi|312115495|ref|YP_004013091.1| phage/plasmid primase, P4 family [Rhodomicrobium vannielii ATCC 17100] gi|311220624|gb|ADP71992.1| phage/plasmid primase, P4 family [Rhodomicrobium vannielii ATCC 17100] Length = 726 Score = 305 bits (780), Expect = 2e-80, Method: Composition-based stats. Identities = 130/791 (16%), Positives = 245/791 (30%), Gaps = 127/791 (16%) Query: 7 KEQAKQAIHNGFKLIPLRLGDK---RPQRLGKWEEQLLSSEKIDKLP----------ACG 53 + + +G + +P R W Q + + + G Sbjct: 27 RRWVAWRLEDG-RKVPKDARTGGNARSNDSSSWATQREARAWWSRNRTVEALIGDPRSGG 85 Query: 54 FGFVCGVGEQP-LYAFDIDSK--DEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNK 110 G + G L+ D+D ++ A D + + + L F + Sbjct: 86 IGVMLGDLGDGHLWCIDLDGCLGNDGAAPHAADVVKRFGSY--CEVSPSGRGLKLFFLIS 143 Query: 111 EGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDV 170 + T G+ F H + K + L E D Sbjct: 144 D--TDVAALGVTA--------GKAFAGPGAHSEMKLMVRGWSTLTEKAYSR-GALREIDA 192 Query: 171 EYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYN--GSHDE 228 + F K K + + + + ++ L EEF + H + Sbjct: 193 GAVRWFIDVAGPAYQKQMKGGGERPRDESGSGQLFRLAKLAHDLEWLKEEFEDVIADHPD 252 Query: 229 WIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFT 288 A H + + + R W ++ + Sbjct: 253 ------AAAHVAKEGQRALD--RAWDNAAKPFEPTH------------------------ 280 Query: 289 SLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTL 348 + F F+ G L+ W++ D Sbjct: 281 ------------EDEPAGFDQDSVIRAFTKAYAGELLFDHHAGKWFRFDG---------Y 319 Query: 349 DKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQS 408 + + + + + + ++ ++ + Sbjct: 320 WRREETKLAL--------------------HYAREQSLKIASSEAKTLKTVPTWEAIERG 359 Query: 409 LEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGE---- 464 + F++TSD+ + + LG +G +DL TG+ E I++ T + + Sbjct: 360 ARSVREFAVTSDVWNRDTMLLGTPNGTVDLRTGELRDARPEDRISRVTAVAPIPHDEFRA 419 Query: 465 --PSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLI 521 +L + + + + G +L G + Q+ + + G GGSGK T +N + Sbjct: 420 KRDCPRWLAFLDEALAGDAGAIRFLQQWCGYSLTGETREQKLVFVYGPGGSGKGTAINTV 479 Query: 522 KYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM 581 G+ V + + L RL G+R+ SET + +IK + Sbjct: 480 GDILGDYAVNVGMETLTASKYE----RHTTELARLRGARMARASETEKGKAWAENRIKNL 535 Query: 582 TGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDA 641 TG D +TAR + + E F I N +R+ D A RR++++PFD P + Sbjct: 536 TGQDTITARFMRQDDF-EFAPEFKLTIFGNNRPSLRDVDAAIKRRFLILPFDHPPRRPNT 594 Query: 642 SFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCC 701 A L+ W + G + GL +P V A +E DT+ W+ D C Sbjct: 595 KLADALKR-EWPGILAWLIDGCLDWQESGL--IVPPVMDAATKEYFAAEDTFAQWLADRC 651 Query: 702 DIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWK 761 D+G + S +L S+S Y + T L Q+GF ++ + Sbjct: 652 DVGPEFVDTSDNLWDSWSRYA--YGLGEEPGTKKGTFAETLSQRGFF-----KRDQIGRD 704 Query: 762 SKRIIKGLKLK 772 KR +GL+++ Sbjct: 705 RKRGYRGLRVR 715 >gi|327409707|ref|YP_004347127.1| putative primase [Lausannevirus] gi|326784881|gb|AEA07015.1| putative primase [Lausannevirus] Length = 902 Score = 304 bits (779), Expect = 3e-80, Method: Composition-based stats. Identities = 113/647 (17%), Positives = 230/647 (35%), Gaps = 57/647 (8%) Query: 178 QEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAF-LSCFGEEFYNGSHDEWIPVVMAV 236 + I K K P++ + +T + + ++D+W+ V + Sbjct: 266 RGIIPSEKKMAKKKRPTRLVKTMEQIMEDIKMVTDSGILGMLNDSRAENYDDWMNVGWTL 325 Query: 237 HHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIG-------DTAKKRSTFTS 289 + G + ++ +S + S +DE+ Y W+ + + G + Sbjct: 326 FNIGNGLPEALDLWIDFSSRASNFDEKKCEYVWEQMEMKGKGIGSLLQMAKNDNPEKYAE 385 Query: 290 LF-YHHGKLIPKGLLASRFSDA-YNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLT 347 + + + + A K + + Y A + WY+ + Sbjct: 386 WKTLKCKDDLDAAIKCPKPTHANIAKLIHTKYSDRFICADAKSNIWYEFRSHRWNKLDDA 445 Query: 348 LDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQ 407 + + + ++ LS + + + ++ +S A + Sbjct: 446 NELMRIISFELPDIFRLEIARLSA-ISSQGTDPNAQLTMKRCLDMQAKLQMDSFATGVMR 504 Query: 408 SLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ 467 + + + LD + +G +DG++DL+ G + + YI+ STG + E + Sbjct: 505 MCKRLFLNEKFLEKLDENRDIIGMEDGVVDLKLGIFRDGSPDDYISMSTGISYREFSETD 564 Query: 468 ----EFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKY 523 E + + F + ++ R V + GGN+ +R G G +GK+ NL++Y Sbjct: 565 RAVVECREFLRKLFPNPKIRKCAIRMVSSCMQGGNRNKRIYVCTGKGHNGKTVFFNLLEY 624 Query: 524 AFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTG 583 FG + ++ R A A P L R G+R +I E ++ +++N +K+++G Sbjct: 625 IFGQYLIKFPREMCLVG-RTASASSARPELARAPGARFAVIQEVHKGEKLNPGILKELSG 683 Query: 584 GDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI-ANRDAS 642 D R Y + FT F++ NK V D A W R I F+ + +D Sbjct: 684 NDSFFVRSLYEKG-RDVKPQFTIFMMCNKPPSVPGSDQATWNRLRAILFESTFLSEQDDL 742 Query: 643 FAQKLET-----------------KYTLEAKKW-FLKGVKAYISKGLDVDIPEVCLKAKE 684 + E A W ++ +AY +GL PE Sbjct: 743 WIDDPEERKRLHMFKADPHFEEKIPELAHALFWICMQDFRAYKEEGL--CEPEEVTMTTN 800 Query: 685 EERQGTDTYQAWIDDCCDI-------GENLWEES---HSLAKSYSEYREQELNYDRKRIS 734 + R D + +I DC + GE+ L +Y E+ ++ S Sbjct: 801 KMRARNDPIRRYIRDCVEKIDKEELDGEDEEIPYVTVSELFNNYKEWYDENF----PSYS 856 Query: 735 TRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDN 781 + VT+ +K +K + + + + +L+ + D+N Sbjct: 857 AKKVTILKFRKQISRALKVQPVGGKK-----FEYYRLREQEDLEDEN 898 >gi|260161779|emb|CAZ39323.1| phage DNA polymerase [Streptococcus suis] gi|313575361|emb|CBR26890.1| hypothetical protein [Streptococcus phage phi-SsUD.1] Length = 761 Score = 304 bits (779), Expect = 3e-80, Method: Composition-based stats. Identities = 118/579 (20%), Positives = 203/579 (35%), Gaps = 73/579 (12%) Query: 244 SKGKEIARRWSKQG-STYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGL 302 + ++ +++ D+ + W + T K + + + + L Sbjct: 220 QEARDGFDEQAQKCVPPLDKIELDTIWGS-AVRFYNRTIKTSKGYVAPDVFNRE----TL 274 Query: 303 LASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIM------ 356 +SD + + YT T Y + T + + Sbjct: 275 KPDDYSDVGEAGVLAREYGNRLAYTNATDYLY---------YDGTHWRENKQLALGAVVH 325 Query: 357 ---NFLVSMKEDVFDLSEEPEDNNKNSKSPR---------------------FWFNTDYR 392 L + ++ + + + + + + ++ Sbjct: 326 FTDEQLAEANALLESADKQLQSSGIDELTIKAGGKRLENAVETPLQLKYLKAYLAAKEFH 385 Query: 393 RQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQ--KVKPTKEL 450 + ++ A A + S+ LDS L + DL G + + E Sbjct: 386 KFVMKHRDYKNLMAVYNTAKPMLSVELSELDSDDLLLNTPEATYDLRKGINGQQEHNPED 445 Query: 451 YITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGV 509 YITK T + + + ++ +F +E++DY +GMA +G + I G Sbjct: 446 YITKITAVSPSDQG-MGLWQETLATFFCNDQELIDYVQEIIGMAAIGKVYQEHMIIAYGG 504 Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569 G +GKST N I G+ + + M N+ +P L L G R+VI SE E Sbjct: 505 GANGKSTFWNTIARVLGSYSGKLSADALTMSNKR----NVSPELAELKGKRLVIASEMAE 560 Query: 570 NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIV 629 +N A +KQ+T D + A Y + + S T + N V DD WRR +V Sbjct: 561 GMRLNTAVVKQITSTDEIQAEKKYKDPFH-FVPSHTLVLYTNHLPKVGANDDGTWRRLVV 619 Query: 630 IPFDKPIANRD--ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEER 687 IPF+ I R +FA L W ++G + I +P + + R Sbjct: 620 IPFNAKIIGRSDIKNFADYLYDNAAPAIMSWIIEGAEKAIKANFKTKVPTAVSASVKAYR 679 Query: 688 QGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGF 747 + D ++ DCC +G+ L E+S L Y Y + + Y R ST L+Q GF Sbjct: 680 EANDWLGHFLSDCCQVGDQLTEKSGELYSQYRAYCTKNMEYTR---STTDFYSALEQAGF 736 Query: 748 IGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDNSNIID 786 K I GLKL V+D + +D Sbjct: 737 K--------RKRTSKGNFILGLKL------VEDGYDFLD 761 >gi|327309735|ref|YP_004336634.1| P4 family phage/plasmid primase [Pseudonocardia dioxanivorans CB1190] gi|326955377|gb|AEA29069.1| phage/plasmid primase, P4 family [Pseudonocardia dioxanivorans CB1190] Length = 868 Score = 304 bits (778), Expect = 4e-80, Method: Composition-based stats. Identities = 98/487 (20%), Positives = 180/487 (36%), Gaps = 37/487 (7%) Query: 306 RFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNF------- 358 F+D N + Y+W Sbjct: 16 TFNDMGNARRLVELCGDDVR----------HFRGTWYVWDGKRFARDQDYRVQEQAKRVP 65 Query: 359 LVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENS-KAKSTAQSLEAGSIFSI 417 L K+ +S E ++ K+ + + N + S + ++ Sbjct: 66 LEMRKQAYRAISASKELSHDERKAAETSARELLKFADASGNRLRLASMIELARTEPEITV 125 Query: 418 TS-DLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY 476 T D DS Q+G +DL TG+ + ++ IT+ + + S+ F ++ Sbjct: 126 TDADAFDSDPWAFNVQNGTIDLRTGELREHSRGDMITRISPATYDPDARSELFDKFLARI 185 Query: 477 FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEAS 536 CVG L G + G G +GK+ L++ + + G+ Y Sbjct: 186 QPDPVERRALQLCVGYTLTGFTGEAKLFTANGGGRNGKNVLLDTVAHLLGDYYRKAPAGF 245 Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNT 596 R + A+P + + G+R+V+ SET D + +++K++TG +TAR YG+ Sbjct: 246 LTA--RKEDGTSASPDMADMRGARMVMASETERGDRLAESRVKELTGDRTITARFLYGD- 302 Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKL------E 648 + +F +++ N VR D+ W R +IPF + I RD KL + Sbjct: 303 FFSFRPTFKIWLLTNYRPSVRGTDEGIWSRLALIPFREYITPEERDPHLTDKLIGLFNGD 362 Query: 649 TKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLW 708 W ++G +A+ S + +P+ A E+ R D A++ D C Sbjct: 363 PSDLSGVLTWAVEGARAWASNK-TLALPDTWRAAAEDYRVEQDLMGAFLSDHCIFRPGEI 421 Query: 709 EESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKG 768 S L Y + Q + R S R ++ LKQ+ +K + + ++ + + G Sbjct: 422 TTSGDLYAHYVWWCRQAGEHAR---SQRAFSIELKQR--PEYMKNKVLARKSDGRVVFDG 476 Query: 769 LK-LKPA 774 ++ LKP Sbjct: 477 MRGLKPN 483 >gi|50914497|ref|YP_060469.1| Phage DNA polymerase [Streptococcus pyogenes MGAS10394] gi|40218553|gb|AAR83207.1| hypothetical phage protein [Streptococcus pyogenes] gi|50261598|gb|AAT72366.1| ATPase [Streptococcus pyogenes] gi|50903571|gb|AAT87286.1| Phage DNA polymerase [Streptococcus pyogenes MGAS10394] Length = 761 Score = 304 bits (777), Expect = 5e-80, Method: Composition-based stats. Identities = 123/571 (21%), Positives = 202/571 (35%), Gaps = 57/571 (9%) Query: 244 SKGKEIARRWSKQG-STYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGL 302 + ++ +++ D+ + W + + K S + + L Sbjct: 220 QEARDGFDEQAQKCVPPLDKAELDTIWGS--AVRFYNRTIKTS---KSYVAPDAFNRETL 274 Query: 303 LASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTL--------DKITAS 354 +SD + + YT T Y D + D+ A Sbjct: 275 KPDDYSDVGEAGVLAREYANKLAYTNATDYLY-YDGTHWRENKQLALGAVVHFTDEQLAE 333 Query: 355 IMNFLVSMKEDVFDLSEEPEDNNKNSKSPR--------------FWFNTDYRRQNVEENS 400 + L S + + + K + ++ + ++ Sbjct: 334 AIALLESADKQLQSSGIDELTIKAGGKRLENAVETPLQLKYLKAYLAAKEFHKFVMKHRD 393 Query: 401 KAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQ--KVKPTKELYITKSTGT 458 A A I S+ LDS L + DL G + + E YITK T Sbjct: 394 YKNLMAVYNTAKPILSVELSELDSDDLLLNTPEATYDLRKGINGQQEHNPEDYITKITAV 453 Query: 459 PFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTL 517 + + + ++ +F +E++DY +GMA +G + I G G +GKST Sbjct: 454 SPSDQG-MGLWQETLATFFCNDQELIDYVQEIIGMAAIGKVYQEHMIIAYGGGANGKSTF 512 Query: 518 MNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK 577 N I G+ + + M N+ +P L L G R+VI SE E +N A Sbjct: 513 WNTIARVLGSYSGKLSADALTMSNKR----NVSPELAELKGKRLVIASEMAEGMRLNTAV 568 Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637 +KQ+T D + A Y + + S T + N V DD WRR +VIPF+ I Sbjct: 569 VKQITSTDEIQAEKKYKDPFH-FVPSHTLVLYTNHLPKVGANDDGTWRRLVVIPFNAKIT 627 Query: 638 NRD--ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQA 695 R +FA L W ++G + I ++P + + R+ D Sbjct: 628 GRSDIKNFADHLYDNAAPAIMSWIIEGAEKAIKANFKTNVPTAVSSSVKAYREANDWLGH 687 Query: 696 WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755 ++ DCC +G+ L E+S L Y Y + + Y R ST L+Q GF Sbjct: 688 FLGDCCQVGDQLSEKSGELYSQYRAYCAKNMEYTR---STTDFYSALEQAGFK------- 737 Query: 756 IEKEWKSKRIIKGLKLKPAFESVDDNSNIID 786 K I GLKL V+D + +D Sbjct: 738 -RKRTSKGNHILGLKL------VEDGYDFLD 761 >gi|313813468|gb|EFS51182.1| phage/plasmid primase, P4 family protein [Propionibacterium acnes HL025PA1] Length = 752 Score = 304 bits (777), Expect = 5e-80, Method: Composition-based stats. Identities = 124/774 (16%), Positives = 237/774 (30%), Gaps = 82/774 (10%) Query: 38 EQLLSSEKIDKLPACGFGFVCGVG-------EQPLYAFDID--SKDEKTANTFKDTFEIL 88 S E++ G DID D D L Sbjct: 27 TDQTSLEQVA-WLDHVAATYTGDRRSSASFISSDCVVMDIDNDHTDNPDEWITPDDLAEL 85 Query: 89 HGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEY 148 M + + + ++ V + I P T + Sbjct: 86 -------------------MAGVEFMTATSRNHQKPKRTLSARPRFHVYFPISPVTDAD- 125 Query: 149 TWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNR 208 R + ++ +F T P W + + Sbjct: 126 -TYAGLKRRLAGRFGFFDPQALDA-GRFIYGTTNPETTIHNGTKLLDAWLDEADEIDVFA 183 Query: 209 EITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYK 268 A GE N + + V+ + +T + + R+ S + Sbjct: 184 AFDASTQVIGEGSRNATLSRFAGRVLIRYGQTAQARDLFD--RKASLCEPPLSDHELESI 241 Query: 269 WDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHF---- 324 W + + + + S + L F+D +M + Sbjct: 242 WQS--ACRFAAKVEAQPGYLSPEAYAEL---TSLRPEDFTDVGQASMLTAEYSSRLAFTE 296 Query: 325 ---LYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEP-------- 373 + W + I D+ A + L ++++ Sbjct: 297 ATDWLVYEGGVWSESAPAAQGIAQELTDRQLAEAGHLLEKARDELMVTGANAVLAAASSK 356 Query: 374 -----EDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSL-EAGSIFSITSDLLDSSSR 427 + + R + + V + ++++ L EA + T LD+ Sbjct: 357 AKALGGFTSPQRAAYRAFEDAKAYEAFVLKRRESRAITSCLREAHPMLLTTPARLDADPY 416 Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE-SEEVMDYF 486 L G D+ G + ITK T + ++ + ++ +F+ E++ Y Sbjct: 417 LLNTPGGTWDVRDGTRRDHNPLDLITKQTALDPTDTG-AEIWNRALNVFFQSDRELIGYV 475 Query: 487 TRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV-INAEASDIMQNRPPE 545 R VG+A +G + + G G +GKST N I G ++A+ I NR Sbjct: 476 QRIVGLAAIGTVMVEALVIAYGDGRNGKSTFWNTIARVLGTYAGNMSADVLTIGGNR--- 532 Query: 546 AGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFT 605 P L G +++I +E+ E ++ + +KQ+ D + A Y ++ S T Sbjct: 533 --NVKPELAEAKGKQLIIAAESEEGVRLSTSTVKQLAFTDQIYAEKKYKAPFA-FTPSHT 589 Query: 606 PFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD--ASFAQKLETKYTLEAKKWFLKGV 663 + N V D WRR IVIPF+ I + ++A L W ++G Sbjct: 590 LILYTNHLPRVGAMDAGIWRRLIVIPFNAVIESSSDVKNYADHLYETAGGAVLAWIMEGS 649 Query: 664 KAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYRE 723 + ++ + P + A R+ + + ++D C++ +L E + L + Y + + Sbjct: 650 RLIHAEDYQLAPPAQVVAASSAYREENNWFAQFLDARCEVDPSLSERAGDLYQEYRAWAQ 709 Query: 724 QELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFES 777 + R L+Q GF ++ K + GL L F S Sbjct: 710 STSGWARPM---ADFNATLEQSGFE--------RRKSKHGMYVYGLALTSEFNS 752 >gi|168214579|ref|ZP_02640204.1| primase [Clostridium perfringens CPE str. F4969] gi|170713981|gb|EDT26163.1| primase [Clostridium perfringens CPE str. F4969] Length = 754 Score = 304 bits (777), Expect = 6e-80, Method: Composition-based stats. Identities = 87/492 (17%), Positives = 175/492 (35%), Gaps = 30/492 (6%) Query: 287 FTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSL 346 T + + +SD N + + WY +W+ Sbjct: 284 LTKRTDEFVQYKDNIIYDFNWSDVGNAERLISIYGKDIKFNVNQGKWY--------VWNG 335 Query: 347 TLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTA 406 ++ S + + ++ + N + + V N Sbjct: 336 VNWELDNS-FKVENLYRRVLRKFQKDIVNINIQGDEQATSKQKEKAKAFVLRNETDGKIK 394 Query: 407 QSL-EAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFV-EGE 464 L +A + + D + ++L + K + IT+ + F E + Sbjct: 395 GVLNQAKTFQGVNFIESDKDDYLFNTPEATINLRNLNQKKHDRRDLITQCSNYSFNREND 454 Query: 465 PSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKY 523 ++ ++ F +E+++Y + VG +L G Q + G G +GKST + ++ Sbjct: 455 KCPNWIAFLNRIFCGDQELINYVQKAVGYSLTGDMSEQCLFMLWGGGANGKSTFVKALED 514 Query: 524 AFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTG 583 G + + +N A L RL R+VI SE E N +K ++ Sbjct: 515 IMGTYAATIKGETLMEKN---GQDGARGDLARLTNKRVVIASELQEGQVFNEPLLKVLSA 571 Query: 584 GDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDA 641 G+ + R Y + F +I+ NK V+ D WRR+ +IPF +D Sbjct: 572 GETLPVRFMYQEEFM-LKPKFKLWIMTNKKPKVKGNDHGIWRRWRMIPFKYKFTEKEKDP 630 Query: 642 SFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCC 701 +F ++ W + G + + +G + P+ ++A E+ + D +I+DCC Sbjct: 631 NFYEEKLKPELEGILLWAITGYQMWKEQG--FEAPKEVMEAVEDYKMDMDQVARFIEDCC 688 Query: 702 DIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWK 761 I ++ ++ Y + E +++ + +LK+KGF I K Sbjct: 689 FIRDDAECTGSAMYDEYLNWCINEGEN--YKMTNHKLAQDLKEKGF--------INKRRT 738 Query: 762 SKRIIKGLKLKP 773 + + G+ + Sbjct: 739 AGKYWIGIGIDS 750 >gi|15843066|ref|NP_338103.1| bacteriophage protein [Mycobacterium tuberculosis CDC1551] gi|308376126|ref|ZP_07446144.2| phage/plasmid primase, P4 family, C- domain protein [Mycobacterium tuberculosis SUMu007] gi|308380119|ref|ZP_07669121.1| phage/plasmid primase, P4 family, C- domain protein [Mycobacterium tuberculosis SUMu011] gi|308400808|ref|ZP_07493275.2| phage/plasmid primase, P4 family, C- domain protein [Mycobacterium tuberculosis SUMu012] gi|13883410|gb|AAK47917.1| bacteriophage protein [Mycobacterium tuberculosis CDC1551] gi|308344231|gb|EFP33082.1| phage/plasmid primase, P4 family, C- domain protein [Mycobacterium tuberculosis SUMu007] gi|308362562|gb|EFP51413.1| phage/plasmid primase, P4 family, C- domain protein [Mycobacterium tuberculosis SUMu011] gi|308366214|gb|EFP55065.1| phage/plasmid primase, P4 family, C- domain protein [Mycobacterium tuberculosis SUMu012] Length = 472 Score = 303 bits (776), Expect = 7e-80, Method: Composition-based stats. Identities = 98/432 (22%), Positives = 158/432 (36%), Gaps = 28/432 (6%) Query: 340 NVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEEN 399 + W + E LS+ D + + E Sbjct: 60 GWHSWDGRRWAADDRGEAKRAVLAELRQALSDSLNDKELRADVRKC-----------ESA 108 Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTP 459 S A F+ T LDS L +G LDL T + ITK Sbjct: 109 SGVAGVLDLAAALVPFAATVADLDSDPHLLNVANGTLDLHTLKLRPHAPADRITKICRGA 168 Query: 460 FVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMN 519 + S + ++ E V + R G+ LLG + + GVG +GKS Sbjct: 169 YQSDTESPLWQAFLTRVLPDEGVRGFVQRLAGVGLLGTVREHVLAILIGVGANGKSVFDK 228 Query: 520 LIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIK 579 I+YA G+ + + G+ + L G R V +SE+ ++ + + IK Sbjct: 229 AIRYALGDYACTAEPDLFMHRENAHPTGE-----MDLRGVRWVAVSESEKDRRLAESTIK 283 Query: 580 QMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA-- 637 ++TGGD + AR + E S TP ++ N V D A WRR V+PF+ I Sbjct: 284 RLTGGDTIRARKM-RQDFVEFTPSHTPLLITNHLPRVPGDDTAIWRRIRVVPFEVVIPAD 342 Query: 638 NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWI 697 +D +L+ W + G Y GL P+ L A R+ +DT + +I Sbjct: 343 EQDRELDARLQL-EADSILSWAVAGWSDYQRIGL--SQPDAVLAATSNYREDSDTIKRFI 399 Query: 698 -DDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKI 756 D+C L + L +++ +R QE IS + +L G+ K Sbjct: 400 DDECVTSSPVLKATTTHLFEAWQRWRVQEG---VPEISRKAFGQSLDTHGYPVTDKAR-- 454 Query: 757 EKEWKSKRIIKG 768 + W++ ++G Sbjct: 455 DGRWRAGIAVRG 466 >gi|15608720|ref|NP_216098.1| phiRv1 phage protein [Mycobacterium tuberculosis H37Rv] gi|148661377|ref|YP_001282900.1| putative phiRv1 phage protein [Mycobacterium tuberculosis H37Ra] gi|167966959|ref|ZP_02549236.1| bacteriophage protein [Mycobacterium tuberculosis H37Ra] gi|215428058|ref|ZP_03425977.1| bacteriophage protein [Mycobacterium tuberculosis T92] gi|215430474|ref|ZP_03428393.1| bacteriophage protein [Mycobacterium tuberculosis EAS054] gi|260186531|ref|ZP_05764005.1| bacteriophage protein [Mycobacterium tuberculosis CPHL_A] gi|260200642|ref|ZP_05768133.1| bacteriophage protein [Mycobacterium tuberculosis T46] gi|289443035|ref|ZP_06432779.1| phi phage protein [Mycobacterium tuberculosis T46] gi|289447191|ref|ZP_06436935.1| phiRv1 phage protein [Mycobacterium tuberculosis CPHL_A] gi|289751280|ref|ZP_06510658.1| phiRv1 phage protein [Mycobacterium tuberculosis T92] gi|289753669|ref|ZP_06513047.1| phiRv1 phage protein [Mycobacterium tuberculosis EAS054] gi|306775768|ref|ZP_07414105.1| phage/plasmid primase, P4 family, C- domain protein [Mycobacterium tuberculosis SUMu001] gi|306805291|ref|ZP_07441959.1| phage/plasmid primase, P4 family, C- domain protein [Mycobacterium tuberculosis SUMu008] gi|306971876|ref|ZP_07484537.1| phage/plasmid primase, P4 family, C- domain protein [Mycobacterium tuberculosis SUMu010] gi|2117255|emb|CAB09087.1| Probable phiRv1 phage protein [Mycobacterium tuberculosis H37Rv] gi|148505529|gb|ABQ73338.1| putative phiRv1 phage protein [Mycobacterium tuberculosis H37Ra] gi|289415954|gb|EFD13194.1| phi phage protein [Mycobacterium tuberculosis T46] gi|289420149|gb|EFD17350.1| phiRv1 phage protein [Mycobacterium tuberculosis CPHL_A] gi|289691867|gb|EFD59296.1| phiRv1 phage protein [Mycobacterium tuberculosis T92] gi|289694256|gb|EFD61685.1| phiRv1 phage protein [Mycobacterium tuberculosis EAS054] gi|308215857|gb|EFO75256.1| phage/plasmid primase, P4 family, C- domain protein [Mycobacterium tuberculosis SUMu001] gi|308348162|gb|EFP37013.1| phage/plasmid primase, P4 family, C- domain protein [Mycobacterium tuberculosis SUMu008] gi|308358730|gb|EFP47581.1| phage/plasmid primase, P4 family, C- domain protein [Mycobacterium tuberculosis SUMu010] gi|323717855|gb|EGB27045.1| phiRv1 phage protein [Mycobacterium tuberculosis CDC1551A] Length = 471 Score = 303 bits (776), Expect = 7e-80, Method: Composition-based stats. Identities = 98/432 (22%), Positives = 158/432 (36%), Gaps = 28/432 (6%) Query: 340 NVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEEN 399 + W + E LS+ D + + E Sbjct: 59 GWHSWDGRRWAADDRGEAKRAVLAELRQALSDSLNDKELRADVRKC-----------ESA 107 Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTP 459 S A F+ T LDS L +G LDL T + ITK Sbjct: 108 SGVAGVLDLAAALVPFAATVADLDSDPHLLNVANGTLDLHTLKLRPHAPADRITKICRGA 167 Query: 460 FVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMN 519 + S + ++ E V + R G+ LLG + + GVG +GKS Sbjct: 168 YQSDTESPLWQAFLTRVLPDEGVRGFVQRLAGVGLLGTVREHVLAILIGVGANGKSVFDK 227 Query: 520 LIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIK 579 I+YA G+ + + G+ + L G R V +SE+ ++ + + IK Sbjct: 228 AIRYALGDYACTAEPDLFMHRENAHPTGE-----MDLRGVRWVAVSESEKDRRLAESTIK 282 Query: 580 QMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA-- 637 ++TGGD + AR + E S TP ++ N V D A WRR V+PF+ I Sbjct: 283 RLTGGDTIRARKM-RQDFVEFTPSHTPLLITNHLPRVPGDDTAIWRRIRVVPFEVVIPAD 341 Query: 638 NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWI 697 +D +L+ W + G Y GL P+ L A R+ +DT + +I Sbjct: 342 EQDRELDARLQL-EADSILSWAVAGWSDYQRIGL--SQPDAVLAATSNYREDSDTIKRFI 398 Query: 698 -DDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKI 756 D+C L + L +++ +R QE IS + +L G+ K Sbjct: 399 DDECVTSSPVLKATTTHLFEAWQRWRVQEG---VPEISRKAFGQSLDTHGYPVTDKAR-- 453 Query: 757 EKEWKSKRIIKG 768 + W++ ++G Sbjct: 454 DGRWRAGIAVRG 465 >gi|76786816|ref|YP_329358.1| prophage LambdaSa04, DNA primase [Streptococcus agalactiae A909] gi|76561873|gb|ABA44457.1| prophage LambdaSa04, DNA primase, P4 family [Streptococcus agalactiae A909] Length = 761 Score = 303 bits (775), Expect = 8e-80, Method: Composition-based stats. Identities = 119/573 (20%), Positives = 192/573 (33%), Gaps = 67/573 (11%) Query: 244 SKGKEIARRWSKQG-STYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGL 302 + ++ + + D+ + W + T K + S L Sbjct: 220 QEARDGFDEQALKCDPPLDKTELDTIWGS-AVRFYNRTIKGSEGYVSP----EAFNRGEL 274 Query: 303 LASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITA-----SIMN 357 +SD + + YT T ++ K +++ Sbjct: 275 KPDDYSDIGEAGVLAREYGEKLAYTNATD---------YLTFTGQYWKEDKQLAIGAVLE 325 Query: 358 FLVSMKEDVFDLSE------------EPEDNNKNSKSPRFWFNTDYRRQ----------- 394 F+ ED D E E + ++ Sbjct: 326 FMDLQLEDASDKYEKVIKDLVNTGVSENLVREGGKALAKVIETPTQQKLYTTYLAARTYY 385 Query: 395 --NVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETG--QKVKPTKEL 450 ++ TA A + +I LD L + DL G + + Sbjct: 386 QFVMKRRDYRYITATHNTAKPMLAIDLSELDKDDMVLNTPEATYDLRIGLSGSHEHDPKD 445 Query: 451 YITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGV 509 YITK T + + + ++ +F +E++DY +GMA +G + I G Sbjct: 446 YITKMTTVSPGDQG-MGLWQETLATFFCNDQELIDYVQEIIGMAAIGKVYQEHMIIAYGG 504 Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569 G +GKST N I G+ + + M N+ +P L L G R+VI SE E Sbjct: 505 GANGKSTFWNTIARVLGSYSGKLSADALTMSNKR----NVSPELAELKGKRLVIASEMAE 560 Query: 570 NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIV 629 +N A +KQ+T D + A Y + + S T + N V DD WRR +V Sbjct: 561 GMRLNTAVVKQITSTDEIQAEKKYKDPFH-FVPSHTLVLYTNHLPKVGANDDGTWRRLVV 619 Query: 630 IPFDKPIANRD--ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEER 687 IPF+ I R +FA L W ++G + I +P + + R Sbjct: 620 IPFNAKITGRSDIKNFADYLYDHAAPAIMSWIIEGAEKAIKANFKTKVPAAVANSVKVYR 679 Query: 688 QGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGF 747 + D ++ +CC++G+ L E+S L Y Y Q + Y R T L Q GF Sbjct: 680 EANDWLGHFLSECCEVGDKLSEKSGELYSRYRAYCVQNMEYTRN---TTDFYAALAQAGF 736 Query: 748 IGGIKREKIEKEWKSKRIIKGLKLKPAFESVDD 780 K I GLKL + D Sbjct: 737 E--------RKRTNKGNFIMGLKLADDGDDFLD 761 >gi|167006280|ref|YP_001661503.1| hypothetical protein pSHK1.14 [Streptomyces sp. HK1] gi|115394141|gb|ABI97026.1| unknown [Streptomyces sp. HK1] gi|166162362|gb|ABY83483.1| hypothetical protein pSHK1.14 [Streptomyces sp. HK1] Length = 517 Score = 303 bits (775), Expect = 8e-80, Method: Composition-based stats. Identities = 93/492 (18%), Positives = 175/492 (35%), Gaps = 37/492 (7%) Query: 294 HGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITA 353 G+ LL +D N +F+ F + + Y W K Sbjct: 39 QGQATAPALLPPMLTDRGNAKLFAQLYSDQFRHV---------EGLGWYCWDQYRWKRVG 89 Query: 354 SIMNFLVSMKEDVFDL-SEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAG 412 L + + + + +P + + R+ S K+ +A Sbjct: 90 GEKAALWAAGDMAEQMSATDPRGVFSEREIAQH-------RRRSMSTSGMKALLHQAKAA 142 Query: 413 SIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDL 472 S+ D+LD + L G++DL G+ KP + + P+ + Sbjct: 143 PALSLDPDVLDGDAYSLCTPAGVVDLRNGRLHKPDPLRDLHSRATNVAPQAMPTPRWHAF 202 Query: 473 VSGYFESE----EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 + F + E+ D+ +G ++ G AQ + G G +GKS L++++ G+ Sbjct: 203 LDDTFGDDAKGREMTDFLHLLLGYSITGDVGAQVLPFLWGKGANGKSVLLDVMIQVMGDY 262 Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588 + + E + L L G RI + SE ND+ + A++K +TGGD + Sbjct: 263 ADAAPPGFLMDKGNFAE---HSTELTELHGRRIFVCSELKPNDKFDEARVKLLTGGDKIK 319 Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQK 646 AR Y + +++ N V A+WRR +IPF++ + + + A + Sbjct: 320 ARRM-RQDYFSFTPTHKLWLLGNHQPEVGTGGHAFWRRIRLIPFERVVVADRKIDNLAGE 378 Query: 647 LETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDI-GE 705 L + W ++G Y++ + P A D ++++CC G Sbjct: 379 LVQEEGPGILHWLIEGAIRYLTSRDPLAGPSSVRLATAAYETTEDHIGRFLNECCVRQGP 438 Query: 706 ---NLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKS 762 +L E L +Y+ + E + R ++Q G+ + Sbjct: 439 DTGDLRVEQGLLYGTYTGWCSSEGIRAD---TARAFASRIRQ---EIGLASPAEMLKSSG 492 Query: 763 KRIIKGLKLKPA 774 K+ L L P Sbjct: 493 KKYYPSLALLPD 504 >gi|31792768|ref|NP_855261.1| phiRv1 phage protein [Mycobacterium bovis AF2122/97] gi|31618358|emb|CAD96276.1| Probable phiRv1 phage protein [Mycobacterium bovis AF2122/97] Length = 471 Score = 303 bits (775), Expect = 9e-80, Method: Composition-based stats. Identities = 98/432 (22%), Positives = 158/432 (36%), Gaps = 28/432 (6%) Query: 340 NVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEEN 399 + W + E LS+ D + + E Sbjct: 59 GWHSWDGRRWAADDRGEAKRAVLAELRQALSDSLNDKELRADVRKC-----------ESA 107 Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTP 459 S A F+ T LDS L +G LDL T + ITK Sbjct: 108 SGVAGVLDLAAALVPFAATLADLDSDPHLLNVANGTLDLHTLKLRPHAPADRITKICRGA 167 Query: 460 FVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMN 519 + S + ++ E V + R G+ LLG + + GVG +GKS Sbjct: 168 YQSDTESPLWQAFLTRVLPDEGVRGFVQRLAGVGLLGTVREHVLAILIGVGANGKSVFDK 227 Query: 520 LIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIK 579 I+YA G+ + + G+ + L G R V +SE+ ++ + + IK Sbjct: 228 AIRYALGDYACTAEPDLFMHRENAHPTGE-----MDLRGVRWVAVSESEKDRRLAESTIK 282 Query: 580 QMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA-- 637 ++TGGD + AR + E S TP ++ N V D A WRR V+PF+ I Sbjct: 283 RLTGGDTIRARKM-RQDFVEFTPSHTPLLITNHLPRVPGDDTAIWRRIRVVPFEVVIPAD 341 Query: 638 NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWI 697 +D +L+ W + G Y GL P+ L A R+ +DT + +I Sbjct: 342 EQDRELDARLQL-EADSILSWAVAGWSDYQRIGL--SQPDAVLAATSNYREDSDTIKRFI 398 Query: 698 -DDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKI 756 D+C L + L +++ +R QE IS + +L G+ K Sbjct: 399 DDECVTSSPVLKATTTHLFEAWQRWRVQEG---VPEISRKAFGQSLDTHGYPVTDKAR-- 453 Query: 757 EKEWKSKRIIKG 768 + W++ ++G Sbjct: 454 DGRWRAGIAVRG 465 >gi|170730309|ref|YP_001775742.1| hypothetical protein Xfasm12_1160 [Xylella fastidiosa M12] gi|167965102|gb|ACA12112.1| phage-related protein [Xylella fastidiosa M12] Length = 842 Score = 303 bits (775), Expect = 1e-79, Method: Composition-based stats. Identities = 91/509 (17%), Positives = 181/509 (35%), Gaps = 49/509 (9%) Query: 294 HGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITA 353 + +D N + + + +A+ ++W T Sbjct: 353 AVERHDVPEALYLTTDTANAVRIAKHYGKRLMVSAE----------RWFVWEGTHWAHGM 402 Query: 354 SIMNFLV-SMKEDVFDLSEEPEDNNKNSKSPRFW-FNTDYRRQNVEENSKAKSTAQSLEA 411 L + + + E+ +++ + + + S+ +ST ++ A Sbjct: 403 DAARLLALKLSKIIRGEVEQWRTKRADTEKEKSKNAKIAAALEAWGKKSEMRSTVEAAMA 462 Query: 412 --GSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF 469 S+ + ++ LD+ L +G +DL TG E YIT+ F + EF Sbjct: 463 LAKSMLVVKAERLDTDPWLLNCANGTVDLRTGTLKAHRPEDYITRVVPINFDPKATAPEF 522 Query: 470 LDLVSGYFESE-----EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524 + ++ E + D+ R G G + + + G+G +GKSTL++LI Sbjct: 523 ITTLARITCEEGQAQQPLSDFLQRWFGYCATGSVREHKLAVMYGMGRNGKSTLLDLISGI 582 Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGG 584 G+ + A + + + L G R++ ++ET+E + +KQ TGG Sbjct: 583 LGSYAGVAAPGLLMDGG----HDRHPTEIADLAGRRMMTVNETSEGGILREGFVKQATGG 638 Query: 585 DCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA------- 637 D + AR + + E + ++ N ++ D W R ++I F Sbjct: 639 DSLKARHMRSD-FFEFQPTHKLQLLTNHKPVIKGQDVGIWSRLMLISFKARFGTAEEIEA 697 Query: 638 -----NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDT 692 D +KL W + G + GL+ P + A ++ + D Sbjct: 698 GAAQYPIDHKITEKL-AAEREGVLAWIVAGAVEWCKNGLNP--PGIVRDASKDYQTEQDR 754 Query: 693 YQAWIDDCCDIGENLWEESHS-----LAKSYSEYREQELNYDRKRISTRTVTLNLKQKGF 747 +I D C +G E + L +Y+++ + Y +S L++ Sbjct: 755 VTQFIKDECVLGMEHEEPLTAPMGGGLYPAYTQWCKDSGVY---PLSKTRFLGELERCVP 811 Query: 748 IGGIKREKIEKEWKSK--RIIKGLKLKPA 774 KR + K + +I+G+ L A Sbjct: 812 KFRNKRGTRTVDGKRRELVVIQGIGLVDA 840 >gi|196885459|gb|ACG80592.1| primase/helicase [Acanthamoeba castellanii mamavirus] Length = 960 Score = 302 bits (774), Expect = 1e-79, Method: Composition-based stats. Identities = 102/603 (16%), Positives = 190/603 (31%), Gaps = 52/603 (8%) Query: 163 PLLSEEDVEYLFKFFQEITVPLVKDKKSIIPS---KTWTNNNNRQYTNREITAFLSCFGE 219 PL + ++ + + T K + + + + L Sbjct: 315 PLAIDAKLKKIKEKINNNTNNTNTHKNTAELGDHHFNFIKAVSEETLVE--AKNLVKLFS 372 Query: 220 EFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGS-TYDEENFNYKWDTFDFEEIG 278 + W V + + + E +SK+ + +E W + + Sbjct: 373 VQRATDYHTWYQVGRCLSNI---DHRLLEDWITFSKKCPSKFKKEECERLWRNMNMKPSN 429 Query: 279 ---------DTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTAD 329 + + + + K + + K + YK + + Sbjct: 430 YTMATLHYFASKDDPDKYFEMKKLKIDGLIKEGMEASH-HTIAKLLIEKYKFIYKCASIK 488 Query: 330 TKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEP--EDNNKNSKSPRFWF 387 WY+ + + L E +D + Sbjct: 489 NGIWYEFRNHRWIEIDSAYTLRNLISEVLVNEYANRQRILFGEATRQDAENKKEKFNDAV 548 Query: 388 NTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPT 447 N + + N+ + + LD ++ +G ++G+ DLE G Sbjct: 549 NITKVIKQLNNNTFKNGVIKECADIAYDPNFLRNLDENNYLIGFENGVFDLEAGIFRDGC 608 Query: 448 KELYITKSTGTPFVEGEPSQE----FLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRF 503 + I+ T ++E + E + + + +Y + L G + F Sbjct: 609 PDDCISLCTNYKYIEIDEDDETFKNINGFLKKIQPDKSMREYILTLLSTCLSGTISEESF 668 Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVI 563 + G G +GKS LM L+KY G+ Y + + + R + A+P L G R Sbjct: 669 YVLTGSGANGKSKLMELLKYTLGDLYK-PMDIRLLTEKRSSSS-SASPELADKKGIRACP 726 Query: 564 ISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAW 623 E +DEIN +K TGGD + AR Y F PF++ N+ +++ DD Sbjct: 727 FDEPKASDEINTGFMKIFTGGDTIAARALYKEP-IYFKPQFKPFLLCNELPTIKSDDDGT 785 Query: 624 WRRYIVIPFDKPIANR-------------------DASFAQKLETKYTLEAKKWFLKGVK 664 WRR VIPF D S ++KL + LK + Sbjct: 786 WRRLKVIPFLSKFIKHSEATKKMKKEGLPKNHFWADTSLSEKLP-DWKQGFMCLLLKYFR 844 Query: 665 AYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLW--EESHSLAKSYSEYR 722 Y GL P++ + E R+ D +Q +I D +N L ++ E+ Sbjct: 845 KYRKHGL--IHPKLVTQHTVEYRKKCDVFQDFIGDYLVRVDNTKKGISVMDLYQNMREWY 902 Query: 723 EQE 725 + Sbjct: 903 KSN 905 >gi|40807289|ref|NP_047955.2| gp9a [Streptomyces phage phiC31] gi|40313246|emb|CAA07134.2| gp9a [Streptomyces phage phiC31] Length = 805 Score = 302 bits (773), Expect = 1e-79, Method: Composition-based stats. Identities = 87/471 (18%), Positives = 165/471 (35%), Gaps = 45/471 (9%) Query: 308 SDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVF 367 SDA N + G Y + ++W +A+ + + Sbjct: 363 SDAMNAHALVAWTDGRIKYAS---------GLGYFVWDGVTWVKSATRVRQEIHAMGAAL 413 Query: 368 DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSR 427 L+ + ++ + L + + ++ D+++ Sbjct: 414 VLAG-----------------CLPESRGFTMTTRIDALMTELRSVPSVHVEAEEFDANAH 456 Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE-SEEVMDYF 486 L +G++DL TG+ K +T S + + + + F + +++ Y Sbjct: 457 LLSFANGVVDLRTGKLRAHDKGDMLTVSLPIEYDPNAQAPRWEQFLQEIFPNNADLVGYM 516 Query: 487 TRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEA 546 R VG + G Q F + G G +GKS + FG A+ + Sbjct: 517 RRLVGYGITGNTSEQCFAVLWGKGANGKSVFTETLTDVFGRITKTTPFATFEDKGNG--- 573 Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 G L L GSR+V+ SE ++ A +K++TG D +TAR + +F Sbjct: 574 GGIPNDLAALRGSRLVMASEGESGKPMSEAVLKRVTGKDKVTARFL-RQEFFTFAPTFLI 632 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEAKKWFLKGVK 664 + N ++ D+ WRR +IPF + RD +KL + W ++G Sbjct: 633 MLATNHKPKFKSQDEGLWRRVKLIPFVRYFAPEERDYDLDRKL-RAESAGIVAWAVRGAV 691 Query: 665 AYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCD-IGENLWEESHSLAKSYSEYRE 723 + + GL PE A E R +D + D ++ SY ++ E Sbjct: 692 EWYANGLG--DPESISTATREYRATSDALAGFFPGVLDAADDSAIVSGADAYNSYRDWCE 749 Query: 724 QELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPA 774 E + S + ++++G +K+ + + G+K A Sbjct: 750 AEGLKSTEVWSRKAFYGAMEERGIG--------KKKTNTGIALVGVKFADA 792 >gi|302876789|ref|YP_003845422.1| phage/plasmid primase, P4 family [Clostridium cellulovorans 743B] gi|307687470|ref|ZP_07629916.1| phage/plasmid primase, P4 family protein [Clostridium cellulovorans 743B] gi|302579646|gb|ADL53658.1| phage/plasmid primase, P4 family [Clostridium cellulovorans 743B] Length = 755 Score = 302 bits (773), Expect = 1e-79, Method: Composition-based stats. Identities = 106/565 (18%), Positives = 185/565 (32%), Gaps = 51/565 (9%) Query: 237 HHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDT-FDFEEIGDTAKKRSTFTSLFYHHG 295 + T + + K +E W + F + G Sbjct: 207 YGATDKAHEIFLEEAE--KCDPPLSDEELKTIWYSAVKFAKKIQGQDGYVPPDDYNDDFG 264 Query: 296 KLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIW----------- 344 L +SD + +TA T + + D Sbjct: 265 GGEGDSLKPDDYSDVGQARVLCREYGDELKFTAATD-FIRFDGEVWVEDKQMAVGACVEF 323 Query: 345 --------SLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNV 396 + L+++ +++ + E + ++ + + Sbjct: 324 LDLQLADANDELERVRKQLID--AGIAESTVKAGSKAVAKEVEGDQLGLFYALLAAEKYM 381 Query: 397 ----EENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQ--KVKPTKEL 450 + T+ A S+ +I LD + L +LE G Sbjct: 382 AFTMKRRDYKYITSALNVAKSMVTIKVSDLDKNPVLLNTPFATYNLEKGMAGVQPHDPFD 441 Query: 451 YITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGV 509 ITK T + +L+ + +F +E+++Y +G+A +G + I G Sbjct: 442 LITKITEVSPGDEG-MDIWLEALETFFCGDQELIEYVQMVIGLAAIGKVYEEFIIIAYGD 500 Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569 G +GKST N I G + M N+ A P + L G R++I SE E Sbjct: 501 GANGKSTFWNTIARVLGTYSGKISSDILTMGNKV----NAQPEMAELKGKRLIIASEMQE 556 Query: 570 NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIV 629 +N A +KQ+ D + A Y + + + + N V DD WRR V Sbjct: 557 GVRLNTAMVKQLCSTDEIQACKKYKDPFH-FMPAHQVVLYTNHLPRVGANDDGIWRRLKV 615 Query: 630 IPFDKPIANRD--ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEER 687 IPF+ I ++A L KW ++G + V P+V A E R Sbjct: 616 IPFNAKIKGNSDIKNYADYLFENAGPAIMKWIIEGAEKVSKANHKVADPKVVRDAVEAYR 675 Query: 688 QGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGF 747 + D +I +CC++ ++ E+S + Y Y Q Y R ST + + GF Sbjct: 676 EDNDWLGHFIAECCEVDDSFEEKSGEFYQQYRAYCIQNGEYIR---STTDFYSAIDKAGF 732 Query: 748 IGGIKREKIEKEWKSKRIIKGLKLK 772 + ++ G+KLK Sbjct: 733 --------YRHKTNKGVMVHGVKLK 749 >gi|256847830|ref|ZP_05553275.1| phage DNA polymerase [Lactobacillus coleohominis 101-4-CHN] gi|256715519|gb|EEU30495.1| phage DNA polymerase [Lactobacillus coleohominis 101-4-CHN] Length = 751 Score = 302 bits (772), Expect = 2e-79, Method: Composition-based stats. Identities = 118/667 (17%), Positives = 211/667 (31%), Gaps = 51/667 (7%) Query: 141 HPKTKKE-YTWTTPP-HRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWT 198 H KT + + P + L E EY F W Sbjct: 103 HHKTPRPKFHVYFPITEITDAKTYAELKHEIQEYFPYFDDNALDAARFVFGVPSTKAIWH 162 Query: 199 NNNNRQYTNREITAFLSCFGEEFYNGSHDEWIP---VVMAVHHETRGSSKGKEIARRWSK 255 + + + + + + + +K Sbjct: 163 EGSQAVDKFMMAQRYFAQQNIGSIHEGKRNATLSHFAGRIIMRLGNTAEARQAFQEEAAK 222 Query: 256 QGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAM 315 ++ W + + G + + + L +SD + Sbjct: 223 CDPPLSKQELKNIWHS--ATKFGQRMASQKGY--IPPEEYNQPNDDLQPDDYSDTGESYV 278 Query: 316 FSIYKKGHFLYT-------ADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFD 368 F K YT D K W + + + DK + + + + Sbjct: 279 FVNNCKERVCYTNQSGFMWFDGKVWQESEPLALGEVQRFTDKQLTDAQLRVTNSYKKIQQ 338 Query: 369 LSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITS--------- 419 FN + + + A L+ S I Sbjct: 339 NGVTSALQAMGKTKASRTFNDEQLAAFKDYENAKAYEAFILKERSTRGINGILTNSRPKL 398 Query: 420 ----DLLDSSSRFLGEQDGILDLETGQK--VKPTKELYITKSTGTPFVEGEPSQEFLDLV 473 + D+ L +G +L+ G + + ITKST + + + + + Sbjct: 399 VKEINDFDADPFLLNTPNGPFNLKKGMHGQQEIQADELITKSTSCVPG-NQGASLWQEAL 457 Query: 474 SGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532 + +F + +++Y VG+ +G + I G G +GKST N I G Sbjct: 458 TTFFCGDQALINYVQEIVGLVAIGQVYLEALIIAYGSGRNGKSTFWNTIANVLGTYTGHL 517 Query: 533 AEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLN 592 + + R P + + G R++I +E E +N + +KQ+ D + A Sbjct: 518 SADALTTGVRR----NVKPEMAEVKGKRLIISAELEEGKRLNTSIVKQLCSTDEIYAEKK 573 Query: 593 YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD--ASFAQKLETK 650 Y +S S T + N V D+ WRR IVIPF IA R+ ++AQ L + Sbjct: 574 YMKPFS-FTPSHTIVLYTNYLPHVGGNDEGIWRRLIVIPFKATIAKRNDIKNYAQYLTEQ 632 Query: 651 YTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEE 710 +W ++G + I + + P KA D ++++ C++ + ++ Sbjct: 633 AGPAVLQWIIEGAQRIIQQNYQLTTPVAVTKAVRSYHANNDWLGHFLNENCELDPSYEQK 692 Query: 711 SHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLK 770 S L + Y EY + Y R ST LK GF K+ + R IKGL+ Sbjct: 693 SGDLYQKYREYCQSIGEYIR---STSDFYTALKNAGFQRQHKQ--------NGRFIKGLR 741 Query: 771 LKPAFES 777 LK + Sbjct: 742 LKVKADE 748 >gi|158318012|ref|YP_001510520.1| P4 family phage/plasmid primase [Frankia sp. EAN1pec] gi|158113417|gb|ABW15614.1| phage/plasmid primase, P4 family [Frankia sp. EAN1pec] Length = 725 Score = 302 bits (772), Expect = 2e-79, Method: Composition-based stats. Identities = 92/483 (19%), Positives = 178/483 (36%), Gaps = 44/483 (9%) Query: 308 SDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVF 367 +D N +D +W++ W+ + + + K Sbjct: 277 TDDANALRLVAEYGNTIRRVSDMGSWWR--------WTGKRWERDHDDAHVREAAKILAR 328 Query: 368 DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSR 427 L E + K ++ ++ + ++ ++ + LD+ Sbjct: 329 KLPAETLEQRKY-------------KRASLSSTGLSGATRVAQSDPRVTVLARDLDAHPH 375 Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYF 486 L Q G++DL TG L +T+ T + + ++ F E++ Y Sbjct: 376 LLNTQSGVVDLVTGAVKPHDPWLMLTRITPLDVDTEATHPMWSEFLAETFGGDTELVAYV 435 Query: 487 TRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF-----GNQYVINAEASDIMQN 541 G+ALLG + + G G +GK ++ +++ G V + + N Sbjct: 436 QSLCGLALLGDVREHVLPLMYGAGANGKGVILLVLQGLLGIADTGGYSVSAPDGFLMAGN 495 Query: 542 RPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESP 601 + RL G+R+V+ SE + AK+K++TGGD +T R G+ + + Sbjct: 496 ----GTAHPTEIARLRGARLVVCSEQTSGRRFDEAKVKRLTGGDLLTGRFMRGD-FFDFE 550 Query: 602 ASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWF 659 S + N V ++WRR +IPFD + RD KL + W Sbjct: 551 PSHLTVVATNHLPEVIEGGPSFWRRARLIPFDHVVPPERRDTELHTKLLSAEGPAILGWM 610 Query: 660 LKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYS 719 ++G I GL P L A ++ R D+ +++ D C + + W Y Sbjct: 611 VRGAMIVIGSGL--VDPPRVLAATDDYRISEDSLASFVRDDCIVNPHAWCTVPDFRTRYE 668 Query: 720 EYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVD 779 + + +S + VT L + ++ +++ + S+RI +G+ L A D Sbjct: 669 AHCAE---MGVDPLSAKAVTTRLTR---EFPVQSDRLSR--PSRRIYRGIGLVDADAESD 720 Query: 780 DNS 782 + + Sbjct: 721 EET 723 >gi|77412077|ref|ZP_00788403.1| bacteriophage protein, putative [Streptococcus agalactiae CJB111] gi|77161882|gb|EAO72867.1| bacteriophage protein, putative [Streptococcus agalactiae CJB111] Length = 759 Score = 301 bits (771), Expect = 2e-79, Method: Composition-based stats. Identities = 113/566 (19%), Positives = 200/566 (35%), Gaps = 57/566 (10%) Query: 245 KGKEIARRWSKQG-STYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLL 303 + ++ + + ++ + W + T K + S + + Sbjct: 220 EARDGFDEQALKCVPPLEKAELDTIWGS-AVRFYNKTIKNSKDYKSP----EEFQRGEMQ 274 Query: 304 ASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMK 363 +SD + + +T +T + D + + I FL Sbjct: 275 PDDYSDIGEAGLLAREFGDKIAFTRETD-YLAYDGKHWVEDEQLAMRQ---IHQFLDMQL 330 Query: 364 EDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQ-------------------------NVEE 398 E K S P ++ ++ Sbjct: 331 EVAVTKLNNATQKLKQSGIPEMLIQQGGKKLENAIETPIQLVAYQDYKKAFEFYKFVMKY 390 Query: 399 NSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETG--QKVKPTKELYITKST 456 +A + A + ++ LD + L + +DL G + Y+TK T Sbjct: 391 RDYRNLSAIAKMAKHMVRMSVSDLDKNELLLNTPEATIDLSQGLSGIREHDSADYLTKMT 450 Query: 457 GTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKS 515 + + + ++ +F + ++++Y VGMA +G + I G G +GKS Sbjct: 451 NASPSDKGD-GLWQETLATFFCDDTDLINYVQEIVGMAAIGKVYQEHMIIAYGSGANGKS 509 Query: 516 TLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA 575 T N I GN + + M R +P + L G R++I SE +E +N Sbjct: 510 TFWNTIARVLGNYSGKLSAEALTMSVRR----NVSPEMAELKGKRLIIASEMSEGMRLNT 565 Query: 576 AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP 635 A +KQ+ D + A Y + S T + N V DD WRR IVIPF+ Sbjct: 566 AMVKQLCSTDEILAEKKYKAPFH-FVPSHTLVLYTNHLPKVGANDDGIWRRLIVIPFNAK 624 Query: 636 IANRD--ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTY 693 I R +FA L + W ++G + I + +P+V + R+ D Sbjct: 625 ITGRSDIKNFADYLYNEAAPAIMSWIIEGAEKAIKANFKLILPQVVADSVSAYREANDWM 684 Query: 694 QAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKR 753 ++ DCC+IG++L E+S L +Y + + Y R ST L GF Sbjct: 685 GQFLGDCCEIGDHLTEKSGELYSAYRAHCARINEYTR---STTDFYTALANAGFT----- 736 Query: 754 EKIEKEWKSKRIIKGLKLKPAFESVD 779 +K ++KGL+LK + +D Sbjct: 737 ---KKRTNKGVMVKGLQLKLEDDFLD 759 >gi|259502601|ref|ZP_05745503.1| P4 family prophage LambdaSa04 [Lactobacillus antri DSM 16041] gi|259169416|gb|EEW53911.1| P4 family prophage LambdaSa04 [Lactobacillus antri DSM 16041] Length = 751 Score = 301 bits (770), Expect = 3e-79, Method: Composition-based stats. Identities = 110/570 (19%), Positives = 192/570 (33%), Gaps = 46/570 (8%) Query: 233 VMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFY 292 + + + +K ++ W + + G + + + Sbjct: 200 GRIIMRLGNTAEAQQAFQEEAAKCDPPLSKQELKNIWHS--ATKFGQRMASQKGY--IPP 255 Query: 293 HHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYT-------ADTKAWYKKDKNNVYIWS 345 L +SD +F K YT D K W + + + Sbjct: 256 EEYNQPNDDLQPDDYSDTGESYVFVNNCKERVCYTNQSGFMWFDGKVWQESEPLALGEVQ 315 Query: 346 LTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKST 405 DK + + + + FN + + + Sbjct: 316 RFTDKQLTDAQLRVTNSYKKIQQNGVTSALQAMGKTKASRTFNDEQLAAFKDYENAKAYE 375 Query: 406 AQSLEAGSIFSITS-------------DLLDSSSRFLGEQDGILDLETGQK--VKPTKEL 450 A L+ S I + D++ L G +L G + + Sbjct: 376 AFILKERSTRGINGILTNSRPKLVKEINEFDANPFLLNTPTGPFNLRKGMHGQQEIQADE 435 Query: 451 YITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGV 509 ITKST S + + ++ +F + +++Y VG+ +G + I G Sbjct: 436 LITKSTSCVPGSQGAS-LWQEALTTFFCGDQALINYVQEIVGLVAIGQVYLEALIIAYGS 494 Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569 G +GKST N I G + + R P + + G R++I +E E Sbjct: 495 GRNGKSTFWNTIANVLGTYTGHLSADALTTGVRR----NVKPEMAEVKGKRLIISAELEE 550 Query: 570 NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIV 629 +N + +KQ+ D + A Y +S S T + N V D+ WRR IV Sbjct: 551 GKRLNTSIVKQLCSTDEIYAEKKYMKPFS-FTPSHTIVLYTNYLPHVGGNDEGIWRRLIV 609 Query: 630 IPFDKPIANRD--ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEER 687 IPF IA R+ ++AQ L K +W ++G + I + + P KA Sbjct: 610 IPFKATIAKRNDIKNYAQYLTEKAGPAVLQWIIEGAQRTIQQNYQLTTPAAVTKAVRAYH 669 Query: 688 QGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGF 747 D ++++ C++ + ++S L + Y EY + Y R ST LK GF Sbjct: 670 ADNDWLGHFLNENCELNPSYEQKSGDLYQKYREYCQGIGEYIR---STTDFYTALKNAGF 726 Query: 748 IGGIKREKIEKEWKSKRIIKGLKLKPAFES 777 K+ + R IKGL+LK + Sbjct: 727 QRQHKQ--------NGRFIKGLRLKVDDDE 748 >gi|71276703|ref|ZP_00652972.1| Phage/plasmid primase P4, C-terminal [Xylella fastidiosa Dixon] gi|71901935|ref|ZP_00683989.1| Phage/plasmid primase P4, C-terminal [Xylella fastidiosa Ann-1] gi|71162495|gb|EAO12228.1| Phage/plasmid primase P4, C-terminal [Xylella fastidiosa Dixon] gi|71728295|gb|EAO30472.1| Phage/plasmid primase P4, C-terminal [Xylella fastidiosa Ann-1] Length = 843 Score = 301 bits (770), Expect = 3e-79, Method: Composition-based stats. Identities = 91/510 (17%), Positives = 183/510 (35%), Gaps = 50/510 (9%) Query: 294 HGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITA 353 + +D N + + + +AD ++W T Sbjct: 353 AVERHDVPEALYLTTDTANAVRIAKHYGKRLMVSAD----------RWFVWEGTHWAHGT 402 Query: 354 SIMNFLV-SMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYR-RQNVEENSKAKSTAQSLEA 411 L + + + E+ +++ + + + S+ +ST ++ A Sbjct: 403 DAARLLALKLSKIIRGEVEQWRTKRADTEKEKSKNAKIAVALEAWGKKSEMRSTVEAAMA 462 Query: 412 --GSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF 469 S+ + ++ LD+ L +G +DL TG E YIT+ + + F Sbjct: 463 LAKSMLVVKAERLDTDPWLLNCANGTVDLRTGTLKAHRPEDYITRVVLVNYTPDAAAPVF 522 Query: 470 LDLVSGYFESE-----EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524 ++ E + D+ R G G + + + G+G +GKSTL++LI Sbjct: 523 KKTLARITCEEGQAQQPLSDFLQRWFGYCATGSVREHKLAVMYGMGRNGKSTLLDLISGI 582 Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGG 584 G+ + A + + + L G R++ ++ET+E + +KQ TGG Sbjct: 583 LGSYAGVAAPGLLMDGG----HDRHPTEIADLAGRRMMTVNETSEGGILREGFVKQATGG 638 Query: 585 DCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA------- 637 D + AR + + E + ++ N ++ D W R ++IPF Sbjct: 639 DSLKARHMRSD-FFEFRPTHKLQLLTNHKPVIKGQDVGIWSRLMLIPFKARFGTAEEIEA 697 Query: 638 -----NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDT 692 D +KL W + G + GL+ E+ A ++ + D Sbjct: 698 GAAQYPIDHKITEKL-AAEREGVLAWIVAGAVEWCKNGLNPT--EIVRDASKDYQTEQDR 754 Query: 693 YQAWIDDCCDIGENLWEESHS-----LAKSYSEYREQELNYDRKRISTRTVTLNLKQK-- 745 +I D C +G E+ + L +Y+++ ++ Y +S L++ Sbjct: 755 VTQFIKDECVLGMEHEEKISTPMGGGLYPAYTQWCKESGVYA---LSKTRFLGELERCVP 811 Query: 746 GFIGGIKREKIEKEWKSKR-IIKGLKLKPA 774 F E +E + + +I+G+ L A Sbjct: 812 KFGKREALETVEVGKRRRVLLIQGIGLVDA 841 >gi|325478724|gb|EGC81835.1| phage/plasmid primase, P4 family, C-terminal domain protein [Anaerococcus prevotii ACS-065-V-Col13] Length = 742 Score = 301 bits (770), Expect = 3e-79, Method: Composition-based stats. Identities = 116/570 (20%), Positives = 208/570 (36%), Gaps = 63/570 (11%) Query: 237 HHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGK 296 + T + + + ++ S ++ W + F Sbjct: 204 YGNTNEARELFD--KKASLCSPPLPDDELEQIWRS------------ACKFYKKVAASED 249 Query: 297 LIP-------KGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWS---- 345 +P L S FSD +F + ++ T + + + Sbjct: 250 YVPPEEYTEGINLRPSEFSDIGQAEVFVREYQDRIRFSPST-GFLVYNDSYWEESELKAQ 308 Query: 346 ----LTLDKITASIMNFLVSMKEDVFD-------------LSEEPEDNNKNSKSPRFWFN 388 + K I N L+ M ED+ + E D ++ S + Sbjct: 309 GYSQDLVLKQIEEIDNELLKMDEDIKKSGIRDIMSSMSEKKAMEVFDKSQKSIYYKLTSL 368 Query: 389 TDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTK 448 Y++ V+ A E+ + I LD+ L +DL+TG+ Sbjct: 369 EAYKKYAVKRGDTRAIHATLKESKPMLEIDQRELDTDEFLLNTPSFTVDLKTGECRDHKA 428 Query: 449 ELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIR 507 E YITK T + +LD + +F + E+++Y + G++L+G + I Sbjct: 429 EDYITKETSVDPSDEN-MDIWLDALETFFVKDSELIEYVQKVAGISLIGKVYIEALIIAY 487 Query: 508 GVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISET 567 G G +GKST N I + + ++ A P L G R++I +E Sbjct: 488 GDGRNGKSTFWNTISRVLNLYSGSISADILTVNSKR----NAKPELAETRGKRLLIAAEL 543 Query: 568 NENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627 E +N + +KQ+ D + A Y + + + S T + N V D+ WRR Sbjct: 544 QEGLRLNTSNVKQLCSTDEIVAEKKYRDPF-KFIPSHTLVLYTNHLPKVGALDEGTWRRL 602 Query: 628 IVIPFDKPIANRD--ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEE 685 IVIPF+ I ++ L K KW ++G K I + +P+ A E Sbjct: 603 IVIPFEAKIEGSSDIKNYTDYLVDKAGGAVLKWLIEGAKKAIDEDFKFSLPKKVADAINE 662 Query: 686 ERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK 745 ++ + ++ ++++CC+I + E+S + + Y Y + +Y R ST L Sbjct: 663 YKESNNWFKHFLNECCEIDSSYEEKSGEVYQEYRAYCLRTGDYVR---STTDFYSALSSN 719 Query: 746 GFIGGIKREKIEKEWKSKRIIKGLKLKPAF 775 GF+ ++ +I GLKLK F Sbjct: 720 GFM--------RRKTNQGIVINGLKLKSDF 741 >gi|238854132|ref|ZP_04644479.1| phage DNA polymerase, ATPase domain [Lactobacillus gasseri 202-4] gi|238833208|gb|EEQ25498.1| phage DNA polymerase, ATPase domain [Lactobacillus gasseri 202-4] Length = 782 Score = 301 bits (769), Expect = 4e-79, Method: Composition-based stats. Identities = 110/569 (19%), Positives = 192/569 (33%), Gaps = 47/569 (8%) Query: 233 VMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFY 292 + + +K E+ W + + G + + + Sbjct: 233 GRIIMRLGNTPEARQAFQDEAAKCEPPLGEQELRTIWHS--AIKFGHRMASKKGY--IPP 288 Query: 293 HHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYT-------ADTKAWYKKDKNNVYIWS 345 L +SD +F K YT D K W + + + Sbjct: 289 EEYNQPNDDLHPYDYSDTGESYVFVNNCKDRVCYTNQSGFMWFDGKIWQESEPLALGEVQ 348 Query: 346 LTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKST 405 DK A + + + FN D + E + Sbjct: 349 RFTDKQLADAQLRVTKAYQVIQQNGVTSALQTMGKTKASRTFNDDQQATFKEYQNAKAYE 408 Query: 406 AQSLEAGSIFSITS-------------DLLDSSSRFLGEQDGILDLETGQK--VKPTKEL 450 A L+ S I + D++ L DG +L+ G + Sbjct: 409 AFILKERSTRGINGILTNARPKLVKEINEFDANPFLLNTPDGPYNLKQGIHGQQEIQASD 468 Query: 451 YITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGV 509 ITKST S + + ++ +F +++Y VG+ +G + I G Sbjct: 469 LITKSTSCVPGSQGNS-IWQEALNTFFCNDLALINYVQEIVGLVAIGQVYLEALIIAYGS 527 Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569 G +GKST N I G+ + + R P + + G R++I +E E Sbjct: 528 GRNGKSTFWNTIANVLGSYTGHLSADALTTGVRR----NVKPEMAEVKGKRLIISAELEE 583 Query: 570 NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIV 629 +N + +KQ+ D + A Y +S S T + N V D+ WRR IV Sbjct: 584 GKRLNTSIVKQLCSTDEIYAEKKYMKPFS-FTPSHTIVLYTNYLPHVGGNDEGIWRRLIV 642 Query: 630 IPFDKPIANRD--ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEER 687 IPF IA + ++AQ L + +W ++G + I + + P KA ++ Sbjct: 643 IPFKATIAKHNDIKNYAQYLTEQAGPAVLQWIIEGAQRIIQQNYQLTTPAAVTKAVKDYH 702 Query: 688 QGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGF 747 D ++++ C++ + ++S L + Y EY + Y R ST LK GF Sbjct: 703 ADNDWLGHFLNENCELDSSYQQKSGDLYQKYREYCQGIGEYTR---STTDFYTALKNAGF 759 Query: 748 IGGIKREKIEKEWKSKRIIKGLKLK-PAF 775 + + ++GL+LK F Sbjct: 760 --------QRQRKNTGSYVRGLRLKASEF 780 >gi|146277397|ref|YP_001167556.1| hypothetical protein Rsph17025_1354 [Rhodobacter sphaeroides ATCC 17025] gi|145555638|gb|ABP70251.1| phage/plasmid primase, P4 family [Rhodobacter sphaeroides ATCC 17025] Length = 470 Score = 301 bits (769), Expect = 4e-79, Method: Composition-based stats. Identities = 89/472 (18%), Positives = 167/472 (35%), Gaps = 35/472 (7%) Query: 302 LLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVS 361 L ++ MF+ + + W + K Sbjct: 31 LPDDVLTEDAVALMFTAQYGQRARFDHEMGRWVMWEP------DALFWKQDR-------- 76 Query: 362 MKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDL 421 + ++ N + V S A + ++T ++ Sbjct: 77 --------VQLAAHWCRDLARDASMGNAPKVLERVRRKSFLGGVEAMCRADPVHAVTHEV 128 Query: 422 LDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESE 480 D LG +DL TG+ P E IT+ + + E + Sbjct: 129 WDPDPMLLGCPGVTVDLRTGKMRAPIPEDMITRQAAVAPDPDADCPNWKSFIRSVTREDD 188 Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540 ++ + +G +L G K + + I G GG+GKS L++ + G+ + + + Sbjct: 189 DLERFLQAFLGYSLTGSIKEHQMLFIHGNGGNGKSLLLSTVMGIMGDYAQMASMDTFASS 248 Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600 + + L + G+R+V +SE ++ N ++ QMTGGD + AR + + E Sbjct: 249 RYE----RHSTDLAAMRGARVVGVSEVSQGVGWNQQRLAQMTGGDRVRARFMRQDEF-EY 303 Query: 601 PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFL 660 F +V N + + ++A RR ++PF D A KLE +W + Sbjct: 304 HPQFKLIVVGNHKPELSHVNEAMRRRMNIVPFTWKPEVPDQELALKLE-PEWPAILQWLI 362 Query: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSE 720 +G + GL P+V + EE + DT+ W+++CC + L Y Sbjct: 363 RGCLEWQEHGLR--KPQVICRETEEYFEEQDTFAQWLEECCIVDRRDKNCWDVLVDLYHS 420 Query: 721 YREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLK 772 ++ + +T L + GF K + KS R+ G++L+ Sbjct: 421 WKTFAEARLEPAGTAKTFGERLGECGFETAFK----KIAGKSARVRLGVQLR 468 >gi|116630098|ref|YP_815270.1| phage DNA polymerase [Lactobacillus gasseri ATCC 33323] gi|116095680|gb|ABJ60832.1| Phage DNA polymerase, ATPase domain [Lactobacillus gasseri ATCC 33323] Length = 788 Score = 301 bits (769), Expect = 4e-79, Method: Composition-based stats. Identities = 110/569 (19%), Positives = 192/569 (33%), Gaps = 47/569 (8%) Query: 233 VMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFY 292 + + +K E+ W + + G + + + Sbjct: 239 GRIIMRLGNTPEARQAFQDEAAKCEPPLGEQELRTIWHS--AIKFGHRMASKKGY--IPP 294 Query: 293 HHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYT-------ADTKAWYKKDKNNVYIWS 345 L +SD +F K YT D K W + + + Sbjct: 295 EEYNQPNDDLHPYDYSDTGESYVFVNNCKDRVCYTNQSGFMWFDGKIWQESEPLALGEVQ 354 Query: 346 LTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKST 405 DK A + + + FN D + E + Sbjct: 355 RFTDKQLADAQLRVTKAYQVIQQNGVTSALQTMGKTKASRTFNDDQQATFKEYQNAKAYE 414 Query: 406 AQSLEAGSIFSITS-------------DLLDSSSRFLGEQDGILDLETGQK--VKPTKEL 450 A L+ S I + D++ L DG +L+ G + Sbjct: 415 AFILKERSTRGINGILTNARPKLVKEINEFDANPFLLNTPDGPYNLKQGIHGQQEIQASD 474 Query: 451 YITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGV 509 ITKST S + + ++ +F +++Y VG+ +G + I G Sbjct: 475 LITKSTSCVPGSQGNS-IWQEALNTFFCNDLALINYVQEIVGLVAIGQVYLEALIIAYGS 533 Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569 G +GKST N I G+ + + R P + + G R++I +E E Sbjct: 534 GRNGKSTFWNTIANVLGSYTGHLSADALTTGVRR----NVKPEMAEVKGKRLIISAELEE 589 Query: 570 NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIV 629 +N + +KQ+ D + A Y +S S T + N V D+ WRR IV Sbjct: 590 GKRLNTSIVKQLCSTDEIYAEKKYMKPFS-FTPSHTIVLYTNYLPHVGGNDEGIWRRLIV 648 Query: 630 IPFDKPIANRD--ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEER 687 IPF IA + ++AQ L + +W ++G + I + + P KA ++ Sbjct: 649 IPFKATIAKHNDIKNYAQYLTEQAGPAVLQWIIEGAQRIIQQNYQLTTPAAVTKAVKDYH 708 Query: 688 QGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGF 747 D ++++ C++ + ++S L + Y EY + Y R ST LK GF Sbjct: 709 ADNDWLGHFLNENCELDSSYQQKSGDLYQKYREYCQGIGEYTR---STTDFYTALKNAGF 765 Query: 748 IGGIKREKIEKEWKSKRIIKGLKLK-PAF 775 + + ++GL+LK F Sbjct: 766 --------QRQRKNTGSYVRGLRLKASEF 786 >gi|322511112|gb|ADX06425.1| putative VV D5 family helicase [Organic Lake phycodnavirus 2] Length = 824 Score = 300 bits (768), Expect = 6e-79, Method: Composition-based stats. Identities = 107/582 (18%), Positives = 214/582 (36%), Gaps = 46/582 (7%) Query: 200 NNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGST 259 + +Y + + GS+++WI V MA+ + S K + S Q + Sbjct: 234 SIEEEYIKDTHNYTMILDESYYGEGSYNKWIKVGMALKNT---SEKLFISWLKISSQSPS 290 Query: 260 YDEE---NFNYKWDTFDFEE-------IGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSD 309 +D +KW+ FD + + + L + Sbjct: 291 FDWGNVSELFHKWNHFDERDLSYRSIIYWAKESSMEKYNEVRNKSLDKYIHNSLMNVTHW 350 Query: 310 AYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDL 369 + IYK+ + WY ++N F + + Sbjct: 351 DLANTLNQIYKENYKCVNIKHSVWYSFEENRWIENDSGTSLRNLLSTKFYNIYFK--YVQ 408 Query: 370 SEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFL 429 E N + +S N + ++ +S+ + + + LD++ + Sbjct: 409 KRLKEGNKDSEESKNIAGNFSKLAKCLKTSSEKNNVMKESCELFYDKEFYNKLDTNPYLV 468 Query: 430 GEQDGILDLETGQKVKPTKELYITKSTGTPFVE--------GEPSQEFLDLVSGYFESEE 481 G ++G++D++ + K ++ YI K+T ++ E E + F ++ Sbjct: 469 GCKNGVVDIKQKEFRKGSQNDYIHKTTNIDYMPLQHYQEVSPEIIDELNTFMYQLFPEQD 528 Query: 482 VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQN 541 + +Y + L+G N Q F GVG +GKS L++L+ G+ ++ I Q Sbjct: 529 LREYMWEHLASTLIGTNNNQTFNIYLGVGANGKSILVDLMSKILGDY-KGTVPSTLITQK 587 Query: 542 RPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESP 601 R G + + +L+G R ++ E ++ D IN +K++TGGD + R + ++ Sbjct: 588 R-TSIGSTSSEVYQLIGRRYAVMQELSKGDTINEGIMKEITGGDPIQCRALFKDS-VTFI 645 Query: 602 ASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF----------DKPIANRDASFAQKLETKY 651 F + N V++ DD WRR V F D+ +D + K++ Sbjct: 646 PQFKLVVCTNVLFDVKSNDDGTWRRIRVCEFKSKFTDHPYEDRAFPEKDYPYQFKIDKNL 705 Query: 652 TLEAKKWF-----LKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGEN 706 + K W + KA+ ++G +D P L+ E R+G D + N Sbjct: 706 NQKFKYWAPVFFSMLVEKAFQTQGKVIDRP-CVLEPTENYRKGQDVILEFCHSQIVEEPN 764 Query: 707 L---WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK 745 + + ++++ + E IS+R + L++K Sbjct: 765 DALGSLKIGMVNTIFNDWFKNEYGKTSH-ISSRELREYLEKK 805 >gi|304439202|ref|ZP_07399120.1| P4 family prophage LambdaSa04 [Peptoniphilus duerdenii ATCC BAA-1640] gi|304372334|gb|EFM25922.1| P4 family prophage LambdaSa04 [Peptoniphilus duerdenii ATCC BAA-1640] Length = 742 Score = 300 bits (768), Expect = 6e-79, Method: Composition-based stats. Identities = 115/570 (20%), Positives = 214/570 (37%), Gaps = 63/570 (11%) Query: 237 HHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGK 296 + +T + + + ++ S ++E W + F Sbjct: 204 YGKTDEARELFD--KKASLCSPPLEDEELEQIWKS------------ACKFYKKVAASED 249 Query: 297 LIP-------KGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWS---- 345 +P L S FSD +F + ++ T + + + Sbjct: 250 YVPPEEYTEGINLRPSEFSDIGQAEVFVREYQDRIRFSPST-GFLVYNDSYWEESELKAQ 308 Query: 346 --------LTLDKITASIMNFLVSMK-----EDVFDLSEEPE----DNNKNSKSPRFWFN 388 L++I + +K E + +SE+ ++N+ S + Sbjct: 309 GCSQELVLKQLEEIDNGFVKMEEDIKKSGVRETISSMSEKKALASFNDNQKSLYYKLISL 368 Query: 389 TDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTK 448 Y++ V+ A E+ + I LD+ L +DL+TG+ Sbjct: 369 EAYKKYAVKRGDTRAIHATLKESKPMLEIDQRELDTDEFLLNTPSYTVDLKTGECRDHKA 428 Query: 449 ELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIR 507 E Y+TK T + ++D ++ +F + E+++Y + G++L+G + I Sbjct: 429 EDYLTKETSVDPSDEN-IDIWIDALNTFFVKDSELIEYVQKVAGISLIGKVYIEALIIAY 487 Query: 508 GVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISET 567 G G +GKST N I + + ++ A P L G R++I +E Sbjct: 488 GDGRNGKSTFWNTISRVLNLYSGSISADILTVNSKR----NAKPELAETRGKRLLIAAEL 543 Query: 568 NENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627 E +N + +KQ+ D + A Y + + + S T + N V D+ WRR Sbjct: 544 QEGLRLNTSNVKQLCSTDEIVAEKKYRDPF-KFIPSHTLVLYTNHLPKVGALDEGTWRRL 602 Query: 628 IVIPFDKPIANRD--ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEE 685 IVIPF+ I ++ L K KW ++G K I + +P+ A E Sbjct: 603 IVIPFEAKIEGSSDIKNYTDYLVDKAGGAVLKWLIEGAKKAIDEDFKFSLPKKVADAINE 662 Query: 686 ERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK 745 ++ + ++ ++++CC+I + E+S + + Y Y + +Y R ST L Sbjct: 663 YKESNNWFKHFLNECCEIDSSYEEKSGEVYQEYRAYCLRIGDYVR---STTDFYSALSSN 719 Query: 746 GFIGGIKREKIEKEWKSKRIIKGLKLKPAF 775 GF R+ I+ I+GLKLK F Sbjct: 720 GFNRVKLRDGIK--------IQGLKLKSDF 741 >gi|322510700|gb|ADX06014.1| putative VV D5 family helicase [Organic Lake phycodnavirus 1] Length = 891 Score = 300 bits (768), Expect = 6e-79, Method: Composition-based stats. Identities = 104/592 (17%), Positives = 215/592 (36%), Gaps = 53/592 (8%) Query: 193 PSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARR 252 + Q+ L + GS+++W+ V MA+ + S K + Sbjct: 295 KQFIDNILIDEQHIKDTHHYCLLLDDSFYGEGSYNKWVKVGMALKNT---SPKLFITWVK 351 Query: 253 WSKQGSTYDEE---NFNYKWDTFDFEE--------IGDTAKKRSTFTSLFYHHGKLIPKG 301 S + + ++ + + KW +F ++ + +F + Sbjct: 352 LSSKSAIFEWDSISDMYNKWSSFKQDDSLTHRSIIYWCKESNNDGYLEVFNQSIQKYIHY 411 Query: 302 LLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVS 361 ++ +YK+ + + WY+ D N + T Sbjct: 412 SFHHNTDYDIANVLYQLYKESFVCVSIKSNIWYEFDDNRWIENDSGISLRTKLSSEIYNL 471 Query: 362 MKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDL 421 V L + +DN + ++ + + ++ + + + + S + Sbjct: 472 FFRFVKTLERQTDDNEEKKENSSKFSKI---SKTLKTTNDKNNIMKESKEIFYDSAFYKM 528 Query: 422 LDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE--------FLDLV 473 LDS +G ++G++D++ K YI +T + E +E + + Sbjct: 529 LDSKPYLIGCRNGVVDVQNRLFRKGIHSDYIHNTTNNDYYPLEYYKEKSPDVIAEIDEFM 588 Query: 474 SGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533 F E+ +Y + A++G N+ Q F GVG +GKS L+ L+ G+ Sbjct: 589 YQLFPETELREYMWEHLASAIIGTNQNQTFNIYLGVGANGKSKLVELMGKVLGDY-KGTV 647 Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593 ++ I Q R G + + +L+G R ++ E ++ D IN +K++TGGD + R + Sbjct: 648 PSTLITQKR-TSIGNTSSEVHQLIGKRYAVMQELSKGDTINEGIMKEITGGDPIQCRALF 706 Query: 594 GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDAS----------F 643 ++ F + N V++ DD WRR V F + + Sbjct: 707 KDS-VTFIPQFKLVVCTNTLFDVKSNDDGTWRRIRVCEFKSKFTENPYNDKLFPKEYYPY 765 Query: 644 AQKLETKYTLEAKKWF-----LKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAW-- 696 K++TK + + W + A+ ++G D P L+ + R G D + Sbjct: 766 QFKIDTKLDEKFEYWVPVFFSMLVQVAFETQGKVKDRP-CVLEPTNKYRDGQDILLDFCQ 824 Query: 697 ---IDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK 745 +++ CD G NL + + ++ E IS + + +++K Sbjct: 825 SNIVEEPCDSG-NLKI--GIVNDVFKQWMINEYG-KNATISNKELREYMEKK 872 >gi|317501095|ref|ZP_07959301.1| prophage protein [Lachnospiraceae bacterium 8_1_57FAA] gi|316897482|gb|EFV19547.1| prophage protein [Lachnospiraceae bacterium 8_1_57FAA] Length = 757 Score = 299 bits (766), Expect = 9e-79, Method: Composition-based stats. Identities = 108/540 (20%), Positives = 192/540 (35%), Gaps = 49/540 (9%) Query: 258 STYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFS 317 D N W + + + ++ P+ FSD + S Sbjct: 229 PPLDNSELNTIWHSAQRFYSKISHEDGYVPPEVYNDENSYKPE-----DFSDVGQAEVLS 283 Query: 318 IYKKGHFLYTADTKAWYKKDKNNVY--------IWSLTLDKITASIMNFLVSMKEDVFD- 368 Y Y+ T + + + + + A ++ + + + Sbjct: 284 KYFANELRYSPATH-FIRYSDHYWQETEPGAQAVAHELTRRQLAEANRNMMEALQKLKNC 342 Query: 369 ------------LSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFS 416 +E+ + + F Y+ V T+ E + Sbjct: 343 GAQEILDNTSKAKAEQLMSDEQMEAYQEFLAAKAYQSFAVRRRDSKNITSTLKETHPMLE 402 Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQK--VKPTKELYITKSTGTPFVEGEPSQEFLDLVS 474 I+ LD+ L + DL G + + + +ITK T +Q + D + Sbjct: 403 ISPRDLDADCFLLCTPEATYDLRKGMAGAREHSADDFITKITSVSPGSKG-AQLWQDNLD 461 Query: 475 GYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533 F+ ++++DY G+A +G + I G G +GKST N I G + Sbjct: 462 LIFQKDQQLIDYVQMICGLAAIGKVFVEALIIAYGDGRNGKSTFWNAISRVLGLYSGNIS 521 Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593 + + R P + + G R++I +E E +N + +KQ+ D + A Y Sbjct: 522 ADTLTVGCRR----NIKPEMAEVKGKRLLIAAEMQEGARLNDSTVKQLCSTDDVFAEKKY 577 Query: 594 GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD--ASFAQKLETKY 651 + +S T + N V DD WRR IVIPF+ I + ++ + L Sbjct: 578 KDPFS-FKPCHTLVLYTNHLPRVSASDDGIWRRLIVIPFNAKIEGKADIKNYGEYLYENA 636 Query: 652 TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEES 711 W ++G K I+ + +P+ KA +E R D + ++D+ CD+ E+ E S Sbjct: 637 GESILAWIIEGAKKVIALDYQIPVPDCVTKAIDEYRSQNDWFGHFLDEKCDVDESFKESS 696 Query: 712 HSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771 +L ++Y Y Y R ST L++ GF KR KGLK+ Sbjct: 697 SALYQAYRNYSLDCNEYVR---STADFYFALEKAGFERLTL--------NRKRYFKGLKI 745 >gi|114765603|ref|ZP_01444704.1| hypothetical protein 1100011001288_R2601_22901 [Pelagibaca bermudensis HTCC2601] gi|114542052|gb|EAU45085.1| hypothetical protein R2601_22901 [Roseovarius sp. HTCC2601] Length = 605 Score = 299 bits (766), Expect = 1e-78, Method: Composition-based stats. Identities = 101/538 (18%), Positives = 186/538 (34%), Gaps = 71/538 (13%) Query: 298 IPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTL------DKI 351 + D N Y L+ WY+ N L KI Sbjct: 56 LEAEAAHFPLHDHGNGQRLLHYYGEDVLFVPRL-GWYRWQGNRWLADEDELTVRRDAQKI 114 Query: 352 TASIMNFLV--------------------SMKEDVFDLSEEPEDNNKNSKSP-------- 383 +A I+ + ++E + +++ + Sbjct: 115 SARILAEIEYLTLEPWEEERVQLARDTAGQLRELERRKPADLSQEDRDRRRALLQYSNQA 174 Query: 384 ------RFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGIL- 436 + ++ + +K T LEA + L++ + ++G L Sbjct: 175 SEILDRQAARKKAHKAHARASGNSSKITNMLLEAKPEVACLIGDLNADPLAVNVKNGTLK 234 Query: 437 ---DLETGQKV-------------KPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESE 480 DL+ K +E I+K + + + S Sbjct: 235 FRLDLDPHDAEWGDVGPSWKVTLEKHRREDRISKLIPVEYDPDAKCPHWQAFLDRVQPSR 294 Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540 ++ + R VG L G Q+ + G G +GKST ++ + F + + Sbjct: 295 DMQVFLQRYVGYCLTGKTTEQKLVFNYGGGRNGKSTFVDTLAKIFADY-GTTVPIETLTG 353 Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600 + A P L+RL G+R V SE + + A IK +TGG+ + R + E Sbjct: 354 AEQRKGSDATPDLVRLPGARFVRASEPEQGTRMKEAMIKALTGGEAIMIRRM-MQEFVEV 412 Query: 601 PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAKKW 658 F I N +R DD WRR +++P+ + I D + KL W Sbjct: 413 TPEFKLMISGNHKPEIRGSDDGIWRRVLLVPWLEQIPEEEVDPTLPDKLW-AEAPGILAW 471 Query: 659 FLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIG--ENLWEESHSLAK 716 ++G A+ GL IP+ +A +E RQ +D + ++ C+I + +E+S L Sbjct: 472 AVQGYLAWAEGGL--SIPDAVRQATDEYRQESDKLRMFLQSECEITGLPDHFEKSSELRD 529 Query: 717 SYSEYREQELNYDRKRISTRTVTLNLKQK-GFIGGIKREKIEKEWKSKRIIKGLKLKP 773 +++ + L+ +RT+ LK + G + G E+ +S G+++K Sbjct: 530 AFNGW---LLDLGDAAWGSRTIARALKDRAGVVKGPNGEQFRPVKRSDTGYSGIRIKE 584 >gi|91787211|ref|YP_548163.1| Phage/plasmid primase P4-like protein [Polaromonas sp. JS666] gi|91696436|gb|ABE43265.1| Phage/plasmid primase P4-like protein [Polaromonas sp. JS666] Length = 771 Score = 299 bits (764), Expect = 1e-78, Method: Composition-based stats. Identities = 103/788 (13%), Positives = 226/788 (28%), Gaps = 83/788 (10%) Query: 12 QAIHNGFKLIPLRLGDKRPQRLGKW---EEQLLSSEKIDKLPA--CGFGFVCGVGEQPLY 66 + GF L+P+ G K P R W E + +SE+ C G P Sbjct: 27 AYLAAGFALVPIPHGLKGP-RAAGWNLRENAITTSEQAQAQLNGSCNIGLAHAYSNPPTC 85 Query: 67 AFDIDSKDEKTANTFKD--TFEILHGTPI---VRIGQKPKILIPFRMNKE------GIKK 115 A DID+ + + L P + G+ + + +R+ + + Sbjct: 86 ALDIDNMSLARPWFAERGIDLDALLNAPGAVRIHSGRPGRAKLLYRLPQPLPSCTLPWGE 145 Query: 116 KKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRF-KVEDTPLLSEEDVEYLF 174 + Q + + HP T + Y W + D PL + Sbjct: 146 LRCASGNGTTW------QDVLPPSTHPDTGRPYAWIGDIANIQPIPDAPLSAWRQQLAAK 199 Query: 175 KFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVM 234 + VP + L E + Sbjct: 200 GRKEPHAVPCAQR------------------------DDLPPRFAELLHADPKLRTRWDG 235 Query: 235 AVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHH 294 S G +++ +++ F + + +T Sbjct: 236 ETGGLNDASRSGLDMSLASLMVMRGFNDHEIATALRAFAHGKAAQDGRGDHDYTGPLL-- 293 Query: 295 GKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITAS 354 L A R A + D A + + Y W + A Sbjct: 294 -----AKLRAQRTLSRSEPAWTAHRLVAEKFTAEDGAALLLHWRGDFYGWRAGAWRSMAP 348 Query: 355 IMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSI 414 ++ ++ + KN P F N + A Sbjct: 349 -----ADLEAVIYAYLGGAQYLGKNGAEP-FGPNRARVGDVMAALRATAHLASHHAPPCW 402 Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE-FLDLV 473 + D+ L +GI+ L + +L+ T + +L + Sbjct: 403 LNEREGDPDA-RDLLVMANGIMHLPSRTLRPHDAQLFTTTGLPFAYDANAEPPMAWLRFL 461 Query: 474 SGYFESE-EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532 + + E + G L + Q+ + + G +GK T + +++ G + Sbjct: 462 RELWPDDAESRETLQEFFGYLLTADSSRQKILMVVGPKRAGKGTAIKVMRALLGEANCVG 521 Query: 533 AEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEIN----AAKIKQMTGGDCMT 588 ++ + N L L+ R+ +IS+ + ++ A ++ ++G D +T Sbjct: 522 PTL---------DSLRTNFGLQPLIEKRLAVISDARLSGRVDQQALAERLLAVSGEDTLT 572 Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLE 648 + + ++ ++ N+ + + A R+IV+ + + Sbjct: 573 VDRKHISAWTG-RLGVRFVLLTNELPRIADSSGALASRFIVLRLTRSWLGSEDLGLADRL 631 Query: 649 TKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLW 708 + W L G++ +G P + E A++ + C + Sbjct: 632 LRELPAILNWSLNGLERLCQRG-QFRQPAAASELVRELEDLGSPVGAFLRESCVVTPGAE 690 Query: 709 EESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKG 768 E L +++ + + + T +L+ + ++ E + +R +G Sbjct: 691 VERGRLFQAWRLWCQAHG--WEHHGTEATFGRDLRAA--LPDLQTHHPRVEGRQRRFYRG 746 Query: 769 LKLKPAFE 776 + L +++ Sbjct: 747 VGLADSWQ 754 >gi|167746058|ref|ZP_02418185.1| hypothetical protein ANACAC_00753 [Anaerostipes caccae DSM 14662] gi|167654573|gb|EDR98702.1| hypothetical protein ANACAC_00753 [Anaerostipes caccae DSM 14662] Length = 747 Score = 298 bits (763), Expect = 2e-78, Method: Composition-based stats. Identities = 112/599 (18%), Positives = 204/599 (34%), Gaps = 49/599 (8%) Query: 203 RQYTNREITAFLSCFGEEFYNGSHDEWIP--VVMAVHHETRGSSKGKEIARRWSKQG-ST 259 ++ + A + GS + + + + K +I ++ Sbjct: 169 EEFLDELDFAEYDKATQGITEGSRNSTMSHIAGRLIKRYGN-TEKAHDIYLEKAQLCNPP 227 Query: 260 YDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIY 319 ++ W + + G + + + S + L +SD + S Sbjct: 228 LEDSELALIWSS--AVKFGKKVQSQVGYVSPEEFNKGF---SLKPDDYSDIGQAKVLSRE 282 Query: 320 KKGHFLY-------TADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDL--- 369 G ++ D W + + V LD+ + + K+ + D Sbjct: 283 YAGELVFTDSTDYMRYDGTHWAESKQMAVGACEEFLDEQLKEAIAAVEKAKKMLLDAGID 342 Query: 370 ----------SEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITS 419 E+ D F + Y ++ T+ A + Sbjct: 343 KDTVMAGGKALEKAIDEGSEKAFKEFVIASKYYAFVMKRRDMKFVTSALQAAKPMLLKKI 402 Query: 420 DLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE- 478 DS L D DL+ G + ITK T E + D + +F Sbjct: 403 ADFDSQEFLLNAPDATYDLQDGSSKEHAAADLITKMTAVSPS-TEGMDLWKDALDSFFCC 461 Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538 +E++DY + VG++ +G + + G G +GKST N I G + + Sbjct: 462 DKELIDYVQQIVGLSAIGKVYVEALVIAYGEGSNGKSTFWNTIARVLGTYSGTISADALT 521 Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598 + + P + L G R+VI +E E +N + +KQ+ D +TA Y + + Sbjct: 522 VGCKR----NVKPEMAELKGKRLVIAAELEEGMRLNTSIVKQLCSTDEVTAEKKYKDPF- 576 Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDASFAQKLETKYTLEAK 656 + + T + N V DD WRR IVIPF+ I ++A L Sbjct: 577 KYVPTHTLVLYTNHLPRVGANDDGIWRRLIVIPFNAKITGSSDRKNYADYLYENAGGAVL 636 Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAK 716 W + G I + P+V A + R+ D + ++++CC++ ++S + Sbjct: 637 TWIIDGAAKAIKNKYKLKTPKVVEDAINKYRENNDWFSTFVEECCEVDATYTQKSGEFYQ 696 Query: 717 SYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAF 775 Y Y + Y R ST L+ GF K+ K + G++LK F Sbjct: 697 EYRSYCARTGEYTR---STTDFYTALENAGFN--------RKKTKGCNYVLGIRLKSDF 744 >gi|297587097|ref|ZP_06945742.1| P4 family prophage LambdaSa04 [Finegoldia magna ATCC 53516] gi|297575078|gb|EFH93797.1| P4 family prophage LambdaSa04 [Finegoldia magna ATCC 53516] Length = 733 Score = 298 bits (763), Expect = 2e-78, Method: Composition-based stats. Identities = 96/553 (17%), Positives = 189/553 (34%), Gaps = 34/553 (6%) Query: 237 HHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGK 296 + T + + + ++ S ++ W + + + ++ + Sbjct: 204 YGNTDEARELFD--KKASLCSPPLPDDELEQIWRS--ACKFYKKVAASEDYVPPEEYNER 259 Query: 297 LIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWS----LTLDKIT 352 + +D +F+ + K +YT W + Sbjct: 260 YEEYKP--EKLTDIAMAEIFTKHNKDKAIYTISQ-GWLYWTGKKWEDSELKVMSLYMETA 316 Query: 353 ASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQ----S 408 ++ ++ + + E + + + + + K + Sbjct: 317 KKVLENASIEFKETYQELADAEMMGSKEEKAQAKLKINSAKAYLNFAKKMNDHGKVSGIL 376 Query: 409 LEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE 468 A S+ + ++ LD+ + L G++DL+T + + Y K T + Sbjct: 377 KLAKSLLEVKNEKLDADAFILNTPVGVIDLKTSEIKEHDPSYYCAKITALAPSKDN-MDM 435 Query: 469 FLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 ++ + +E +++ G L+G + + G GG+GKST+ N + G+ Sbjct: 436 WIATLRDVTGGDDEFINFLKFHAGSTLIGHVYEEALLIAYGDGGNGKSTVFNSEAHVLGD 495 Query: 528 QYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCM 587 S + + L L G R ++ SET E ++++ +KQ+ D + Sbjct: 496 YAGKIPAESLTTRAK-----NVKVDLAELCGKRFILASETEEGQRLSSSMLKQIASVDDI 550 Query: 588 TARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKL 647 +A Y +S + + + N V + D WRR +V PF I N + KL Sbjct: 551 SAERKYYAPFS-FTPTHSTILYTNHLPKVGSNDRGTWRRIVVAPFSVAIKNPKTDYIDKL 609 Query: 648 ETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENL 707 K +W ++G K YI G V AK+ ++ D +I D C G N Sbjct: 610 LEKAGEAILQWMIEGAKEYIDAGFKYPKCNVVDDAKKSYKEENDWINHFISDKCIKGTNY 669 Query: 708 WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIK 767 E S L + Y E+ Y R R + L +G+ +K Sbjct: 670 KEMSARLYQVYREWAGSNGEYIRN---NRDFSRALIAEGYE--------KKRTNRGIEWG 718 Query: 768 GLKLKPAFESVDD 780 G+ + ES DD Sbjct: 719 GITINDLMESEDD 731 >gi|297242715|ref|ZP_06926653.1| phage/plasmid DNA primase [Gardnerella vaginalis AMD] gi|296888926|gb|EFH27660.1| phage/plasmid DNA primase [Gardnerella vaginalis AMD] Length = 737 Score = 298 bits (762), Expect = 3e-78, Method: Composition-based stats. Identities = 106/588 (18%), Positives = 200/588 (34%), Gaps = 34/588 (5%) Query: 204 QYTNREITAFLSCFGEEFYNGSHDEWIP--VVMAVHHETRGSSKGKEIARRWSKQGSTYD 261 + + E + EE +G + + + ++ + Sbjct: 171 DFLSEEDFSEFDAGTEEIPSGQRNSRLSHIAGKLIKRYGATDETHEKFLSEAERCNPPLP 230 Query: 262 EENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKK 321 + + W + ++ G + + + + +D +F+ + K Sbjct: 231 DAELSKIW--YSAKKFGLKVASQEGYIPPSEYGKSY--EEYKPDDLTDIAMAEVFAKHNK 286 Query: 322 GHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMK----EDVFDLSEEPEDNN 377 +YT W L + K+ I ++ + ++ + E + Sbjct: 287 NKAVYTMSA-GWLYWTGKKWEASELKVMKLYMLIAKKVLKNAGIEFKTAYEEFVQAESSG 345 Query: 378 KNSKSPRFWFNTDYRRQNVEENSKAKSTAQ----SLEAGSIFSITSDLLDSSSRFLGEQD 433 ++ + + +Q + K ++ A S+ + ++ LD + L Sbjct: 346 DKEQADKAKSEVNQAKQYLSFAKKMNDHSKVSGILKLAKSMLEVANEGLDRDAFILNTPC 405 Query: 434 GILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGM 492 GI+DL+TG+ Y TK T + + +E + G Sbjct: 406 GIVDLKTGELKAHDPCSYCTKMTAVCPSREN-MGLWQTTLDMVTAGDKEFQTFLQSHAGS 464 Query: 493 ALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS 552 L+G + + + G GG+GKST+ N + G+ S + + Sbjct: 465 TLIGQVFEESLLLVYGSGGNGKSTVFNAEAHVLGDYAGKIPAESLTTRAK-----NVKVD 519 Query: 553 LIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612 L L G R ++ SET E ++ + +KQ+ D ++A Y + S + + N Sbjct: 520 LAELCGKRFILASETEEGQRLSISMLKQIASVDDISAERKYYAPF-TFTPSHSTILYTNH 578 Query: 613 HLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLD 672 V + D WRR V PF K I N + +L K +W ++G K YI Sbjct: 579 LPKVGSNDKGTWRRIFVAPFTKEIKNPKTDYVDELLQKAGGAILQWMIEGAKLYIQNSYK 638 Query: 673 VDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKR 732 +V +AK+ R D +I D C G N E S SL SY ++ Y R Sbjct: 639 FPTCKVVEQAKDAYRAENDWIGHFITDYCIKGVNETEMSRSLYLSYRQWANLNGEYVRN- 697 Query: 733 ISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDD 780 R + L G+ +K GL + P ++ +D Sbjct: 698 --DRDFSKALLLAGYS--------KKRTGKGYQWCGLSINPNLQAQED 735 >gi|301057712|ref|ZP_07198785.1| phage/plasmid primase, P4 family, C-terminal domain protein [delta proteobacterium NaphS2] gi|300448173|gb|EFK11865.1| phage/plasmid primase, P4 family, C-terminal domain protein [delta proteobacterium NaphS2] Length = 489 Score = 298 bits (762), Expect = 3e-78, Method: Composition-based stats. Identities = 89/480 (18%), Positives = 176/480 (36%), Gaps = 32/480 (6%) Query: 309 DAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIW-SLTLDKITASIMNFLVSMKEDVF 367 + + +F + + FL+ + W + + + K I + + D+ Sbjct: 22 ELGDGILFGLLHENRFLFNETSGEWLVYSGHKWELDLTGEAQKAVEYIAVWYSNRASDLA 81 Query: 368 DLSEEPEDNNKNSKSPRFWF-----NTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLL 422 + E + +K + N ++ + +A ++ D L Sbjct: 82 ARIDRGEKDGDKTKIEQLKAEQRLCNKKAKKLRTQRGRQACLHLAHTNYERPLQVSGDAL 141 Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVE-GEPSQEFLDLVSGYFESEE 481 D L DG++DLETG+ + IT + T + + F ++ + E Sbjct: 142 DLHPMRLACTDGVIDLETGELRPGRPQDLITLGSPTNWHGLHASAPNFERTINEIVDDPE 201 Query: 482 VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQN 541 V ++ R G G + + G G +GK+ L+ + + G + Q Sbjct: 202 VSEFLQRFFGYCCTGLVTESALVVLEGQGRNGKTLLVETLAHVLGPLAGSIPSEMLLDQG 261 Query: 542 RPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESP 601 R A PSL+ L G R SE EN +++++K ++G D + R + + Sbjct: 262 RFTNADSPTPSLMSLRGLRCAFASEVEENRRFSSSRVKWLSGSDSLVGRFPHDRRPTRFR 321 Query: 602 ASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR----------DASFAQKLETKY 651 + ++ N+ D A+W R ++PF + D S A+KL + Sbjct: 322 PTHKLILLINERPNAPMNDYAFWERLHMVPFPFSFVDHEPKAANERRADKSLAEKL-KEE 380 Query: 652 TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEES 711 W ++G + +GL PE K EE ++ D + ++D+ C + E S Sbjct: 381 APGILAWLVRGCLKWQKQGLSP--PEKIRKNTEEYKRSEDLLETFLDEHCILDPKEEEAS 438 Query: 712 HSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771 L ++ + + RK +S + + +K E++ + GL+L Sbjct: 439 ADLYDAFKSWWSEN--VSRKTLSQKKFGRLMGRK----------FERKKTNTIKYVGLRL 486 >gi|320013062|gb|ADW07911.1| phage/plasmid primase, P4 family [Streptomyces flavogriseus ATCC 33331] Length = 515 Score = 297 bits (759), Expect = 6e-78, Method: Composition-based stats. Identities = 96/543 (17%), Positives = 187/543 (34%), Gaps = 45/543 (8%) Query: 252 RWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAY 311 S + S +D + F+ ++ LL +D Sbjct: 1 MSSAESSRFDAAAAAQQMLDFEAAAPAWVPPQQ------VQAPAMTDTPVLLPPMLTDRG 54 Query: 312 NKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDL-S 370 N +F+ F + + Y W K L + + + Sbjct: 55 NAKLFAQLYSDQFRHV---------EGLGWYCWDQFRWKRVGGEKAALWAAGDMAEQMSP 105 Query: 371 EEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLG 430 +P + + + R+ S K+ +A + S+ D+LD + L Sbjct: 106 TDPRGVFSDREIAQH-------RRRTMSTSGMKALLHQAKAAPVLSLDPDVLDGDAYSLC 158 Query: 431 EQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE----SEEVMDYF 486 G++DL G+ KP + + P+ + + F +E++D+ Sbjct: 159 TPAGVVDLRNGRLHKPNPLRDLHSRATNVAPQATPTPRWHAFLDDTFGADTKGQEMIDFL 218 Query: 487 TRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEA 546 +G ++ G AQ + G G +GKS L++++ G+ + + E Sbjct: 219 HLLLGYSITGDVGAQVLPFLWGKGANGKSVLLDVMIQVMGDYADAAPPGFLMDKGNFAE- 277 Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 + L L G RI + SE ND+ + A++K +TGGD + AR Y + Sbjct: 278 --HSTELTELHGRRIFVCSELKPNDKFDEARVKLLTGGDKIKARRM-RQDYFSFTPTHKL 334 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVK 664 +++ N V A+WRR +IPF++ +A + + A +L + W ++G Sbjct: 335 WLLGNHQPEVGTGGHAFWRRIRLIPFERVVAADRKIDNLAGELVEEEGPGILHWLIQGAM 394 Query: 665 AYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCC-----DIGENLWEESHSLAKSYS 719 Y++ + P A D ++ + C + G +L E L +Y+ Sbjct: 395 RYLTSRDPLTGPSSVRLATAAYETTEDHIGRFLSEACARQGPETG-DLRVEQGLLYATYT 453 Query: 720 EYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVD 779 + E + R ++Q G+ + K+ + L P Sbjct: 454 AWCSSEGIRAD---TARAFAGRIRQ---EVGLASPAEMLKSSGKKYYPAMALLPDDLVRP 507 Query: 780 DNS 782 D + Sbjct: 508 DGT 510 >gi|332186933|ref|ZP_08388674.1| phage/plasmid primase, P4 family, C-terminal domain protein [Sphingomonas sp. S17] gi|332012943|gb|EGI55007.1| phage/plasmid primase, P4 family, C-terminal domain protein [Sphingomonas sp. S17] Length = 947 Score = 296 bits (758), Expect = 7e-78, Method: Composition-based stats. Identities = 92/505 (18%), Positives = 175/505 (34%), Gaps = 76/505 (15%) Query: 306 RFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFL-----V 360 +D N F F + ++ ++W ++ + + + + Sbjct: 415 SLTDLGNAERFRARHGWRFRFC---------NELGWFVWDGRRWELLSEEKDKVPGKVSL 465 Query: 361 SMKEDVFDLSEEPE------------DNNKNSKSPRFWFNTDYRR--------------- 393 ++ + V + E + + + + + R Sbjct: 466 AVFDTVRAIRNEADLVEASGRREDAPKDATDEEKAARLDHVVGWRGSGDNKLPIYYSETI 525 Query: 394 ----QNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKV----- 444 ++ E S+ A +A +I +D +D+ + +G L L K Sbjct: 526 RAHAKSSEGVSRLACIANIAKAFGEIAIKADAMDADRMAINVMNGTLRLTQEGKRWMARD 585 Query: 445 -----------------KPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFT 487 I+K F F +S + + + Sbjct: 586 GELKLISQSKEWGLVLTDHQPTDLISKIANVSFKPEASCPVFDGFLSTVQPDQAMRRFLG 645 Query: 488 RCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAG 547 + G++L G Q+ G G +GKST+++ G+ A + + Q R + G Sbjct: 646 QWHGLSLTGDISEQKLAFYHGKGRNGKSTMVDACSEVAGDYGGSVAIETFLDQGRGRKGG 705 Query: 548 KANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPF 607 +A P L RL G R + SE + ++ A IK +TGG+ + AR + SF Sbjct: 706 EATPDLARLPGIRFLRTSEPEKGAKLAEALIKLITGGELIDARHLNK-GFFSFLPSFKVT 764 Query: 608 IVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAKKWFLKGVKA 665 I N + DD WRR +++P+D IA D +KL K W LKG+ Sbjct: 765 ISGNHKPKITGHDDGIWRRVMLVPWDVQIAKEDIDRHLPEKL-RKEKSGILNWMLKGLID 823 Query: 666 YISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQE 725 + GL PE L A + R+ +D ++D+C E +S L ++ + + Sbjct: 824 WRMNGL--VEPESVLAATAKYREQSDQLGRFLDECTKPVEGARSKSSVLFALFTAWAKAT 881 Query: 726 LNYDRKRISTRTVTLNLKQKGFIGG 750 + + + + ++ +GF Sbjct: 882 GAGEWQP---QGFSKAMEDRGFEKK 903 Score = 96.1 bits (237), Expect = 2e-17, Method: Composition-based stats. Identities = 40/277 (14%), Positives = 69/277 (24%), Gaps = 51/277 (18%) Query: 8 EQAKQAIHNGFKLIPLRLGDKRPQ-------------RLGKWEEQLLSSEKI----DKLP 50 E A G+ + P KRP G + ++I K P Sbjct: 12 EAALDYARRGWPVFPCDPRTKRPYLAMDRDEEGKPIKGTGGVTKATTDEDQIRAWWRKWP 71 Query: 51 ACGFGFVCGVGEQPLYAFDI-----DSKDEK--------------TANTFKDTFE-ILHG 90 G G L D D D K + + E + Sbjct: 72 RAMIGVAVGRA--GLIVIDFDPGVYDVIDRKTKEITGQEEWTLEQLKDALAERMEGEMLP 129 Query: 91 TPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIH-----PKTK 145 + + + F+M + T S H+D+ G G Y +A H Sbjct: 130 ETLTSVTRSGGEHQWFKMPAG--EPIGNTGSLPNHIDVRGLGGYVIAPPSHFEGNDDDAP 187 Query: 146 KEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQY 205 +Y W ++ + P + TV + + + R+Y Sbjct: 188 GDYRWLIDGDASRIAECPEALVAIMRA---PPPRNTVDHARPAAGAARFVVDLDASTRRY 244 Query: 206 TNREITAFLSCFGEEFYNGSHDEWIPVV--MAVHHET 240 + + L G A ++ Sbjct: 245 AMHALDSELQELSSTPKAGGRHGGRNQGAYWAAYNLG 281 >gi|315497369|ref|YP_004086173.1| phage/plasmid primase, p4 family [Asticcacaulis excentricus CB 48] gi|315415381|gb|ADU12022.1| phage/plasmid primase, P4 family [Asticcacaulis excentricus CB 48] Length = 521 Score = 296 bits (758), Expect = 8e-78, Method: Composition-based stats. Identities = 106/495 (21%), Positives = 176/495 (35%), Gaps = 32/495 (6%) Query: 300 KGLLASRFSDAYNKAMFSIYKKGHF---LYTADTKAWYKKD--KNNVYIWSLTLDKITAS 354 K L A +D N GH D K + ++ IT Sbjct: 15 KELAAYDLNDFGNALRLIRIMGGHIDKDTVKPDIKRCRLLNLVGQGWIAFNGKHWDITFG 74 Query: 355 IMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSI 414 V +PE R + + + + +A Sbjct: 75 D-QLARQSAHMVSQRMRDPEVMTAIMDKHGRAPADIQRYLDSLGQAGSTAAMLK-QAEPY 132 Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQK------VKPTKELYITKSTGTPFVEGEPSQE 468 SI + D + ++G + L +K IT+ T + + + Sbjct: 133 LSIEIEEFDRAPMAFNVRNGTVWLRQTEKGLKADLRPHDPGDRITRIANTEYDPKAKAPQ 192 Query: 469 FLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 F LV+ + EV + R G A G Q F ++G G GKST+MN ++ G Sbjct: 193 FEQLVATSLRNPEVRAFMQRACGYAFTGEIFEQGFFILQGKGADGKSTIMNALRDMAGGY 252 Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMG-SRIVIISETNENDEINAAKIKQMTGGDCM 587 + + P L+RL G +R+V+++E ++N IK TGGD Sbjct: 253 GASAKVETFLDTG-QASPNGPQPELVRLAGETRLVLLAEPPRGAKLNEGLIKGWTGGDPY 311 Query: 588 TARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDASFAQ 645 +AR G + E +++ N V+ DD WRR VI F+ + RD + Sbjct: 312 SARQIQGKNF-EFVPKGRLWMMCNALPVVKGDDDGIWRRMNVIMFEHQVPEDQRDKRLPE 370 Query: 646 KLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE 705 KL W + GV ++ +GL PE E R+ + + W+D+ C GE Sbjct: 371 KL-KAEFPGILNWIIAGVGDWLEQGLKP--PEKVRAVLENYRKTSSPFGDWLDESCVYGE 427 Query: 706 ---NLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKS 762 + + L SY + E+ + + +S R L Q+ + G + +K K Sbjct: 428 AAGDAVTGATVLYNSYKAWAEENGH--DRPMSVRAFGDALMQRQILLGPRLSDGKKTRKP 485 Query: 763 KRIIKGLKLKPAFES 777 ++LK E+ Sbjct: 486 ------IRLKTLAET 494 >gi|169334190|ref|ZP_02861383.1| hypothetical protein ANASTE_00588 [Anaerofustis stercorihominis DSM 17244] gi|169258907|gb|EDS72873.1| hypothetical protein ANASTE_00588 [Anaerofustis stercorihominis DSM 17244] Length = 359 Score = 295 bits (755), Expect = 2e-77, Method: Composition-based stats. Identities = 73/368 (19%), Positives = 147/368 (39%), Gaps = 16/368 (4%) Query: 413 SIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDL 472 I+ DS ++G L ++T + ++ +TK + + S + Sbjct: 1 MYHPISVSEFDSDPYIFNCKNGTLRVDTFECLEHKSSDKLTKISNVIYDPNAKSHRWDKF 60 Query: 473 VSGY-FESEEVMDYFTRCVGMALLGGNKAQRFIHIRG-VGGSGKSTLMNLIKYAFGNQYV 530 +S F +E + + +G L G + + + G +GK TL + G+ Sbjct: 61 ISEIMFGDKEKAKFLQKLLGYGLTGDTRHECMTILYGASTRNGKGTLCESVLKVLGSYGC 120 Query: 531 INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR 590 + Q + + + RL G R V ISE + +NAA++K MTG D + AR Sbjct: 121 TARPETL-AQKNNANSSQPTEDIARLAGVRFVNISEPGKGLVLNAAQVKSMTGNDTINAR 179 Query: 591 LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLE 648 + N++ + F +I N V + R I++PF++ + +D S Q+ Sbjct: 180 FLHENSF-DFQPLFKLYINTNYLPAVNDMTIFTSGRVIIVPFERHFDESEQDKSLKQEFS 238 Query: 649 TKY-TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENL 707 W L+G +GL + P A + +D +++DC + G + Sbjct: 239 RPEVQSAILNWLLEGYALLRKEGLVL--PHSVKDATARYQHDSDKMVLFMEDCMEQG-DF 295 Query: 708 WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIK 767 E + S+ + Y ++ + +Y S + +L+ + + R++ + + ++ Sbjct: 296 EERTSSVYRCYKDWCAENGHYAE---SMKNFKQSLEA---VANVVRKRPKGGGEKTTMVI 349 Query: 768 GLKLKPAF 775 G +L F Sbjct: 350 GYRLLSDF 357 >gi|228969624|ref|ZP_04130417.1| hypothetical protein bthur0004_62880 [Bacillus thuringiensis serovar sotto str. T04001] gi|228790090|gb|EEM37879.1| hypothetical protein bthur0004_62880 [Bacillus thuringiensis serovar sotto str. T04001] Length = 345 Score = 294 bits (753), Expect = 3e-77, Method: Composition-based stats. Identities = 85/329 (25%), Positives = 148/329 (44%), Gaps = 21/329 (6%) Query: 446 PTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFI 504 +EL +TK T F E E+L+ + F +E+ +Y R +G +L G Q + Sbjct: 4 HDRELGLTKITNISFDENAKCPEWLNFLDQIFQGDKELTEYMQRLIGYSLTGEITEQIMV 63 Query: 505 HIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVII 564 + G G +GKST +N IK G + I + AN + RL+G+R V Sbjct: 64 FLIGGGSNGKSTFINTIKDLMGEYGKQAKSDTFIKKKET----GANNDIARLVGARFVSA 119 Query: 565 SETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWW 624 E+ E ++++ A +KQ+TGG+ + AR Y E F F N ++ D+ W Sbjct: 120 IESEEGEQLSEAFVKQITGGEPVLARFL-RQEYFEFIPEFKVFFTTNHKPVIKGVDEGIW 178 Query: 625 RRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKA 682 RR ++PF+ + RD +K+ W ++G + GL + P + +KA Sbjct: 179 RRIRLVPFNLQLPKEKRDKKLPEKISL-EMPGILNWAIEGCLKWQKSGL--NDPAIVMKA 235 Query: 683 KEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNL 742 + ++ D ++ +CC E++ E+ L + Y+ + + ++ R L Sbjct: 236 TGDYKEEMDILGPFMFECCFKREDVQIEAKELYEVYANWCFKNGE---HQLKNRAFYRIL 292 Query: 743 KQKGFIGGIKREKIEKEWKSKRIIKGLKL 771 + +GF K E+ K+K IKG+ L Sbjct: 293 ESQGF-------KRERGSKNKYYIKGVTL 314 >gi|315122922|ref|YP_004063411.1| P4 family phage/plasmid primase [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496324|gb|ADR52923.1| P4 family phage/plasmid primase [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 333 Score = 294 bits (752), Expect = 4e-77, Method: Composition-based stats. Identities = 268/329 (81%), Positives = 296/329 (89%), Gaps = 4/329 (1%) Query: 465 PSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524 PS EF++LVS YFESEEVM++FTRCVGMALLGGN+AQRFIHIRGVGGSGKSTLMNLIK+A Sbjct: 5 PSAEFMNLVSNYFESEEVMNFFTRCVGMALLGGNEAQRFIHIRGVGGSGKSTLMNLIKFA 64 Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGG 584 FGNQYVINAEASD+MQNRPPEAGKANPSLIRLMGSR+VIISETNENDE+NAAKIKQMTGG Sbjct: 65 FGNQYVINAEASDVMQNRPPEAGKANPSLIRLMGSRVVIISETNENDELNAAKIKQMTGG 124 Query: 585 DCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFA 644 DCMTARLNYGNTYSE+ ASFTPFIV NKHLFVRNPDDAWWRRYIVIPFDKPIANRDA+FA Sbjct: 125 DCMTARLNYGNTYSEARASFTPFIVSNKHLFVRNPDDAWWRRYIVIPFDKPIANRDATFA 184 Query: 645 QKLETKYTLEAKKWFLKGVKAYISKG--LDVDIPEVCLKAKEEERQGTDTYQAWIDDCCD 702 QKLET+Y LEAKKWFL+G+KAYI G LDV +PEVC+ AKEEER+GTDTYQAWIDDCC+ Sbjct: 185 QKLETEYALEAKKWFLEGIKAYIRNGRNLDVYVPEVCINAKEEERRGTDTYQAWIDDCCE 244 Query: 703 IGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEK-EWK 761 +GE EES LA+SYSEYREQELNYDRKRISTRTVTLNLKQKGF EK + Sbjct: 245 VGEGFLEESSILARSYSEYREQELNYDRKRISTRTVTLNLKQKGFKDDRDWEKPRPDRGR 304 Query: 762 SKRIIKGLKLKPAFESVDDN-SNIIDFKR 789 RII+GLKLKPAFE +++ +N+IDFK+ Sbjct: 305 YLRIIRGLKLKPAFEDIENEPNNVIDFKK 333 >gi|119383734|ref|YP_914790.1| P4 family phage/plasmid primase [Paracoccus denitrificans PD1222] gi|119373501|gb|ABL69094.1| phage/plasmid primase, P4 family [Paracoccus denitrificans PD1222] Length = 612 Score = 293 bits (750), Expect = 8e-77, Method: Composition-based stats. Identities = 91/550 (16%), Positives = 180/550 (32%), Gaps = 82/550 (14%) Query: 294 HGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITA 353 +D N ++ + + +Y + ++W+ + Sbjct: 50 QADDPFSDCAQYPLNDHGNGQRYARHYRDELIYVP---------RYGWHVWTGQRWQKDE 100 Query: 354 SIMNFLVSM--------------------------------------------KEDVFDL 369 + E+ Sbjct: 101 DGIEVRRRAQMLGELISREIPHLRLEDWQMQILEDGVQLRRRERELGRIVSAGGEEAEAA 160 Query: 370 SEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKS------TAQSLEAGSIFSITSDLLD 423 +E + + S A EAG +++ + L+ Sbjct: 161 QQELDSMAPKLARLSGVEKVLLSVRKDHHGWAKTSGNTTRIDASIKEAGVGLAVSFERLN 220 Query: 424 SSSRFLGEQDGILDLE--------------TGQKVKPTKELYITKSTGTPFVEGEPSQEF 469 ++ + ++G++ Q V ++ ITK + F Sbjct: 221 AAPLDVCCENGVMRFSVIPGDPESGMSPMADMQFVPHARDQLITKMMPVRYDPEAKRPIF 280 Query: 470 LDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529 ++ EV + R + Q+ + G+G +GKS L++LI FG+ Sbjct: 281 DRFITRILPDPEVRRFVQRWFALNTTALTGEQKLVFFYGLGANGKSVLVDLIARMFGDYA 340 Query: 530 VINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTA 589 A + + + A P L+ LM +R+V SE E +++ IKQ+TGG+ + Sbjct: 341 -ATARIETLTGSTKKDGSAATPDLVPLMLARMVRTSEPEEGEKLREGLIKQLTGGEPINV 399 Query: 590 RLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKL 647 R N+G E F I N VR DD WRR +++PFD I RD KL Sbjct: 400 RPNFGEQ-IEVTPKFKITIQGNYRPEVRGRDDGIWRRLLIVPFDVTIPPKERDPDLGAKL 458 Query: 648 ETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIG--E 705 + W ++G+ Y+ GL P L A E R+ +D +++ CCD+ Sbjct: 459 W-EERSGILNWLIEGLIDYLEGGLQ--EPPAVLSATNEYREESDPLGFFLESCCDVSGQP 515 Query: 706 NLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRI 765 E L +++ +++++ + + + + ++ ++ E++ Sbjct: 516 EDSETVKDLVQAFQFWQDEQGGAVWQPGTVQRQLKDKMRRWVSPSTGKKFAERKSNGIMR 575 Query: 766 IKGLKLKPAF 775 G++ F Sbjct: 576 YDGIRFSIEF 585 >gi|255522605|ref|ZP_05389842.1| hypothetical protein LmonocFSL_15586 [Listeria monocytogenes FSL J1-175] Length = 540 Score = 292 bits (748), Expect = 1e-76, Method: Composition-based stats. Identities = 92/571 (16%), Positives = 189/571 (33%), Gaps = 52/571 (9%) Query: 106 FRMNKEGI-----KKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVE 160 + ++ GI +G++++ G++FV Y +V Sbjct: 5 YSVSGTGIHIIARGNFPDGGRRKGNIEMYPDGRFFVMTGQVIDN---YR--------QVN 53 Query: 161 DTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEE 220 + + + + +P R + Sbjct: 54 EATSAIQYLHTKYIGTNE-VRQINNLQSTVDLPVSDIIQRAERSKQGAQFKTLYDGL--- 109 Query: 221 FYNGSHDEWIPVVMAVHH-----ETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFE 275 ++G + +A + + K E+ R + +D++ + Sbjct: 110 -WDGLYPSQSEADLAFANMLAFWTGCNAEKMDEVFRSSGLYRTKWDQKRGAQLYGEMVIN 168 Query: 276 EIGDTAKK----RSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTK 331 + + S A D N F ++ K Sbjct: 169 KAITNTSEIYQPGSELEGYSISIKNQNNTARKAYGLDDTGNAERFRDKFHDIVRFSYINK 228 Query: 332 AWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDY 391 +Y D +I E + D+ E S + + + Sbjct: 229 GFYFYDSKVW---------KYDNIGAVKTLADEVIKDMKSEFAYMENESDAEKAFMKHLK 279 Query: 392 RRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELY 451 ++ + + EA + + + D FL Q+G ++L+ G+ + ++ Sbjct: 280 ATRSNKGKTNMLK-----EAQHLMPVLPEEFDRHKYFLNTQNGYINLQNGELINHDRQKM 334 Query: 452 ITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVG 510 TK + + + + + + ++ F +E+++Y + VG +L G Q + G G Sbjct: 335 FTKISNIEYTDKIDAPLWQEFLNDIFEGDKELINYIQKAVGYSLSGSTAEQVMFILFGNG 394 Query: 511 GSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN 570 +GKS +++I FG+ + +++ ++ AN + RL G+R V +E NE Sbjct: 395 RNGKSVFLDIINDIFGSYATNIQPQTIMVKQ---QSSNANSDIARLHGARFVTTTEPNEG 451 Query: 571 DEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVI 630 ++ +KQ+TGGD +TAR Y + + E F ++ N +R DD WRR ++ Sbjct: 452 VRLDEGLVKQLTGGDKVTARHLYKDEF-EFTPEFKIWMATNHKPIIRGRDDGIWRRLHLV 510 Query: 631 PFDKPIANR--DASFAQKLETKYTLEAKKWF 659 PF I + D KL W Sbjct: 511 PFTVKIPDEKVDKQLKYKL-RSELTGILNWA 540 >gi|317125794|ref|YP_004099906.1| phage/plasmid primase, P4 family [Intrasporangium calvum DSM 43043] gi|315589882|gb|ADU49179.1| phage/plasmid primase, P4 family [Intrasporangium calvum DSM 43043] Length = 463 Score = 292 bits (746), Expect = 2e-76, Method: Composition-based stats. Identities = 92/461 (19%), Positives = 162/461 (35%), Gaps = 39/461 (8%) Query: 313 KAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEE 372 + LY + + ++ L+E Sbjct: 31 AYRLARRYVDRLLYVH---------GLGWHHFDGKRWAEDDQGHARRAVLEVLRESLAES 81 Query: 373 PEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQ 432 D E + A F+ T +D+ L Sbjct: 82 VGDKQLRMDV-----------TRCESAAGVSGVLDIAAALVEFAATVRDVDADPWLLNCA 130 Query: 433 DGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGM 492 +G LDL T +TK T + S E+ ++ ++ Y R +G Sbjct: 131 NGTLDLRTRALRPHDPSDRLTKVTTGAYDPEADSSEWHAFLASVLPDQDERAYLQRVIGQ 190 Query: 493 ALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS 552 ++ G + F + GVG +GK T I +A G+ I +++ R G P Sbjct: 191 SVYGRVREHLFPVLIGVGANGKGTTYGAISHAMGDYASIINPELLMVRERGGVGG---PE 247 Query: 553 LIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612 ++ LMG+R+VI SET + +++ +K++TGGD +TAR Y S V N Sbjct: 248 MMTLMGARLVIGSETEDGRKLDETLMKRLTGGDELTARRLYREP-VSWRPSHQLIYVTNH 306 Query: 613 HLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKG 670 V+ D A WRR V+PFD + RD ++L + W + G Y G Sbjct: 307 LPKVKGNDPATWRRIRVVPFDVVVPVMQRDPELPERLAL-HADAILTWVIAGHFDYEDNG 365 Query: 671 LDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDR 730 + P ++A + +D +I + C+ G+ + + L ++ + E + Sbjct: 366 -GMREPASVVRATGAFQADSDAVARFIAEECETGDYVHVRTRDLYGAWRRWAVSEGADE- 423 Query: 731 KRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771 +S R L + G+ + ++ + GL L Sbjct: 424 --MSERAFAKELDRLGYEA--------RRTRNGAVRAGLTL 454 >gi|85709926|ref|ZP_01040991.1| primase, putative [Erythrobacter sp. NAP1] gi|85688636|gb|EAQ28640.1| primase, putative [Erythrobacter sp. NAP1] Length = 774 Score = 291 bits (743), Expect = 5e-76, Method: Composition-based stats. Identities = 129/800 (16%), Positives = 243/800 (30%), Gaps = 97/800 (12%) Query: 15 HNGFKLIPLRLGDKRPQRL--------------GKWEEQLLSS-EKIDKLP--ACGFGFV 57 G++LIPL DKR W + + + I +L G Sbjct: 16 EAGYQLIPLHRWDKRRMDDRTGKVRELGKAPIDKNWTTRAHDNCDAIARLQRGGGNVGVR 75 Query: 58 CGVGEQPLYAFDIDSKDEKTANTFKDTFE-------ILHGTPIVRIGQKPKILIPFRMNK 110 D D +++ + D E G P VR G ++ Sbjct: 76 L---RDTDLVIDWDPRNDSGQWSMGDYVEFILRNGLDPTGWPTVRTGSGGLHHYLTKLAD 132 Query: 111 EGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPP-HRFKVEDTPLLSEED 169 I ++ ++ G+ VA T + Y W P F D P Sbjct: 133 LRIVERP---EGYPSIEFKTVGRQVVAPGSIHPTGELYRWEGEPVGMFGAPDAP------ 183 Query: 170 VEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEW 229 + L + + + P + + Y+ E+ + L E + H +W Sbjct: 184 -DRLLESARRHSKPSTVPSRCGV------------YSPEELASMLDALDPEDFEE-HADW 229 Query: 230 IPVVMAVHHETRGSSKGKEIARRWSKQGSTYDE--ENFNYKWDTFDFEEIGDTAKKRSTF 287 + ++MA HH T G G+E WS Y + E +WD+ + G R+ Sbjct: 230 LEIMMACHHATAGD--GREEFIEWSTSDPAYADHAEEIASRWDSLSIDRSGG-ITYRTLH 286 Query: 288 TSLFYHH-GKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSL 346 +L G +IP+ A F D + + W K + Sbjct: 287 KALIEAGRGDVIPRPDPADDFDDELPATAS----------VSSERRWPTKVVYEEKHGAK 336 Query: 347 TLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSK-SPRFWFNTDYRRQNVEENSKA--- 402 A L+ V+DL + + +VE +K Sbjct: 337 NARHFLARRPGRLICSDGKVYDLRDGIWQTRSEAMLRAEIRKTDPTDNLDVEHVNKMVRG 396 Query: 403 KSTAQSLEAGSIFSITSDLLDSSSRFLG-EQDGILDLETGQKVKPTKELYITKSTGTPFV 461 S ++ EA + +D+ + ++G+LD+ + + T F Sbjct: 397 ISDLRATEARPFDWLEESPIDAGPGDIALFRNGLLDVRSRTLHPLDGSYFATGLPEHGFD 456 Query: 462 EGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLI 521 ++ + +G + +A + +++ GV GKST + Sbjct: 457 ADASCPSWMRWLDESLA-PSFHPTLQEWMGYLMTADTRAHKIMNLIGVKRGGKSTAAQVC 515 Query: 522 KYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISET----NENDEINAAK 577 K G Q+V ++ I + L + R++++ + + I + Sbjct: 516 KDLVGRQHVHSSTLEGIAGDFG---------LEPCVDKRLLVVPDAHDVNSAKRAIALER 566 Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637 IK TGGD + + ++ +V NK + A R I+I F+ Sbjct: 567 IKMFTGGDEVDVNRKNI-SVIQATLPTRLMVVANKLPKFIDESGALAARAIIIKFETSFQ 625 Query: 638 NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEV--CLKAKEEERQGTDTYQA 695 R+ W L+G+ S GL I E A E Sbjct: 626 GREDHELAAKLRAEMSGIANWALEGLDRLRSNGLAFTIGEAGRLEAATSEL--SQSPALR 683 Query: 696 WIDDCCDI--GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVT----LNLKQKGFIG 749 + + I + + ++Y ++ E + + + L + + Sbjct: 684 FARERLSITCDQRDAVPMREVYRAYQDWALTEGLSRGETRNQTDLASDLNAALPELKYKQ 743 Query: 750 GIKREKIEKEWKSKRIIKGL 769 + + + K + G+ Sbjct: 744 RRMKSRAGRRAKQTYCLTGV 763 >gi|206599794|ref|YP_002241983.1| gp90 [Mycobacterium phage Gumball] gi|206283008|gb|ACI06462.1| gp88 [Mycobacterium phage Gumball] Length = 977 Score = 291 bits (743), Expect = 5e-76, Method: Composition-based stats. Identities = 143/987 (14%), Positives = 265/987 (26%), Gaps = 227/987 (22%) Query: 6 WKEQAKQAIHNGFK-LIPLRLGDKR--PQRLGKWEEQLLSSEKIDKLPA------CGFGF 56 ++ + G+ +PL K+ P S + I Sbjct: 13 FRRAVEAYRERGWAGTLPLPPRSKKKPPTGYTGHTAPYPSDDDIASWLRMPKYAQGNICL 72 Query: 57 VCGVGEQP--------LYAFDIDSKD-----EKTANTFKDTFEILHGTP--IVRIGQKP- 100 G E L D+D + ++ L P + Sbjct: 73 HLGPVETRGPDGERLELIGIDVDDYEEGGKVKEGGKQLAALEAELGPLPKTYTSSSRTGV 132 Query: 101 KILIPFRMNKEGIKKKKTTESTQGHLDIL-GCGQYFVAYNI-HPKT-----------KKE 147 + F + + H+DI+ +Y + + HP + Sbjct: 133 SGIRFFLVPAQH----AWMGKAAPHIDIVCKTYRYAIVFPSWHPGEVDEETGKVITEGGQ 188 Query: 148 YTWTTP--------PHRFKVEDTPLLSEEDVE---------------------------Y 172 Y W P V D PLL + VE + Sbjct: 189 YKWRDPQGQLLDGLEDIPDVNDLPLLPDAWVERLSRGGMKLSDEDAEIDMDLNVDEMFRW 248 Query: 173 LFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPV 232 K K W + + H W Sbjct: 249 AVGTLPGSDEDAQPCSKMKAAVKYWQGQIEEDASTHDKITGSHWNLACLATEGHTGWRQA 308 Query: 233 VMA---------VHHETRGSSKGKEIARRWSKQ--------------------GSTYDEE 263 + A + + + SK + Y+ Sbjct: 309 MAAVDASVAEDTIKNRGKREISELRSEIMRSKVNALRKLKAQIDKGRRNVLTVCTCYEPS 368 Query: 264 NFNYKWDTFDF--------------EEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSD 309 + D F E + + R + P+ SD Sbjct: 369 --ADELDAFTASLNSAKAAASEPTEEREVASGEGRDGY--WRDGMPNGTPQDPGDYEQSD 424 Query: 310 AYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDL 369 N + K + Y W + + ++ + E + Sbjct: 425 QGNGDHWIDLHKDNAFYVPALGQWIMWTGKSWIVGDGCAERSYRRVKARQKRYAEQLMRR 484 Query: 370 SEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFL 429 + E + + + +R A I L+++ + Sbjct: 485 AAELKAAQDPTANAAVAMAKSWRSWATRSGDVGPIERALKAASMELGIEEGELNANPALI 544 Query: 430 GEQDGILDL--------------------------------------------------- 438 ++G+L+L Sbjct: 545 CCENGVLELDLSPLDSLADDSQSAGRNGDRGRRNGRNGTANVASLAEDDEEFDLDYEAVA 604 Query: 439 --ETGQKVKPTKELYITKSTGTPFVEGEP-------------SQEFLDLVSGYFESEEVM 483 + + +E +T STGT ++ + + + V Y EEV Sbjct: 605 PNSHVRLREIRREDLLTLSTGTNYLPWQELVAGEFGKQEALYASTWARAVEMYLPDEEVR 664 Query: 484 DYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP 543 + + +G +LLG N+ + + + G GSGKST +N A G + + +R Sbjct: 665 LFLQKLLGYSLLGDNRERIVVFLHGPTGSGKSTFLNATLNALGEYADV-VDLGIFKGDR- 722 Query: 544 PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPAS 603 + NP+L + RIV SE ++ + ++A K++TGGD +TA L Y N + + Sbjct: 723 ----QTNPALAYALPKRIVTCSEASQRNVLHADMFKRITGGDPLTAELKYSNESVKRKPA 778 Query: 604 FTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETK-YTLEAKKWFLKG 662 F P+I N + D A R +V+ F++ I +D L + W ++G Sbjct: 779 FVPWIATNTPPSIPGADAAVVDRTVVVGFNEQIRKQDVGMNAMLSSPRAKTAVLAWAVEG 838 Query: 663 VKAYISKGLDV-DIPEVCLKAKEEERQGTDTYQAWIDDC-------------------CD 702 Y +GL D P E ++ +C CD Sbjct: 839 WGMYRREGLRRADFPAAVKGESIEFTNQFSDVSEFLSECVEEAPMSLRRKAERRAWRVCD 898 Query: 703 IGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKS 762 E + Y + ++ DR + + LK G+ + E ++K+ + Sbjct: 899 WPEEWHITVSEVYDVYVTWCQENRVADRNIMKKNGFSRQLKDYGY----RAEVVKKDGFT 954 Query: 763 KRIIKGLKLKPAFESVDDNSNIIDFKR 789 R G KL N+ ++ ++ Sbjct: 955 SRTYAGFKLNS------PNARVLKLQK 975 >gi|170751547|ref|YP_001757807.1| P4 family phage/plasmid primase [Methylobacterium radiotolerans JCM 2831] gi|170658069|gb|ACB27124.1| phage/plasmid primase, P4 family [Methylobacterium radiotolerans JCM 2831] Length = 472 Score = 290 bits (741), Expect = 7e-76, Method: Composition-based stats. Identities = 91/468 (19%), Positives = 177/468 (37%), Gaps = 35/468 (7%) Query: 307 FSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDV 366 ++ + F+ + G L+ DT W + W+ + + F + Sbjct: 31 LTEDWAARTFAERRVGDLLFCHDTGKW--------HTWTGAAWRPNRCGLAF-----QWA 77 Query: 367 FDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSS 426 +L+ E +N + + + A + + +F++T + D+ Sbjct: 78 RELAREMCENEEPKTRF-----------IASKTAFAAGVERFSRSDPVFAVTIEGWDADP 126 Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDY 485 LG G +DL TG+ + + ITK T E +L + + + Sbjct: 127 WLLGTPGGTVDLRTGKLREADRADRITKLTAVAPAETPECPTWLKFLDDVTQGDAGYIRF 186 Query: 486 FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545 + G L G Q G GG+GK L++++ + V A + Sbjct: 187 LQQWAGYCLTGDTSEQALCFAYGGGGNGKGVLIHVLAGILADYAVNAAMETFTAAK---- 242 Query: 546 AGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFT 605 + + L G+R+V SET + + A+IKQ+TGGD M AR + + E Sbjct: 243 HDRHPTEIAALRGARLVTASETEQGRQWAEARIKQLTGGDTMRARYMRQDEF-EFTPVLK 301 Query: 606 PFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKA 665 I+ N + + DDA RR+ ++PF A D +KL K + +W ++G Sbjct: 302 LLIIGNNKPGLSSVDDAARRRFNLLPFLFKPAVPDPQLEEKL-RKEWPQILRWMIEGCLD 360 Query: 666 YISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQE 725 + + + PEV A +E + DT+ W+D C + + + + ++ + + Sbjct: 361 WQAH--RLVRPEVVKDATDEYFEQQDTFGQWLDARCIVDKGNPYRKATTQELFASWADFA 418 Query: 726 LNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773 + + + L + GF + R +G++++P Sbjct: 419 RGSNELVGTMHSFGDRLDKLGFKKN--KNVPTGVNGRARGYEGIEVRP 464 >gi|18496953|ref|NP_569803.1| hypothetical protein TM4_gp70 [Mycobacterium phage TM4] gi|4336104|gb|AAD17635.1| gp70 [Mycobacterium phage TM4] Length = 867 Score = 289 bits (740), Expect = 9e-76, Method: Composition-based stats. Identities = 82/474 (17%), Positives = 170/474 (35%), Gaps = 35/474 (7%) Query: 273 DFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKA 332 + +++ + ++I + +D N + + + Sbjct: 375 RPVTLAPMQPEQTAGNTATVQLSEIIRESTANVTPTDTGNADLLVRACSDRLRWCPE--- 431 Query: 333 WYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYR 392 +W T + + +++ E V + E D R Sbjct: 432 -----SGKWLVWKGTRWQPSPDGGEAIMAAIEVVQSIKVEDGDKAGGQHKMRSLQRRS-- 484 Query: 393 RQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYI 452 + + ++ LD+ L G+++L+TG+ E + Sbjct: 485 ---------LDNMVALAKCRPGMRVSLADLDADPYALNTPSGVVNLKTGELTPHRPEGWH 535 Query: 453 TKSTGTPFVEGEPSQEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGG 511 T+ TG + + + + F + +++Y R G A +G + G G Sbjct: 536 TRVTGAGYERDGAAPRWWAFLHRTFGGDKSMVEYVQRLAGYAAIGEVTHHVLPFLFGAGS 595 Query: 512 SGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEND 571 +GKS LM+++ G+ + + + + RL G+R+V+ SE N + Sbjct: 596 NGKSVLMDVLSAVLGDYAITAPGNFLLAGR-----ERHETEIARLHGARLVVCSEVNADS 650 Query: 572 EINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIP 631 + + AK+K +TGGD ++ R + + S T F++ N V+ +++RR+ +IP Sbjct: 651 KFDEAKVKLLTGGDVLSGRFM-RQDFFDFVPSHTLFLMGNHQPDVKAGGTSFFRRFRLIP 709 Query: 632 FDKPIANRDA--SFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQG 689 F+ + R+ A +L + W G + + G+ P L A + + Sbjct: 710 FEHIVPERERVEGLAHQLVAEEGDAILAWIADGARQVLDGGMR--EPASVLAATAQYQDD 767 Query: 690 TDT-YQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNL 742 T T ++D+CC IGE E ++ + Y + + T L Sbjct: 768 TRTGVARFLDECCTIGEG-EAEVGAVHQCYIAWAIAHGE---PLVDTAKFGREL 817 >gi|212702855|ref|ZP_03310983.1| hypothetical protein DESPIG_00887 [Desulfovibrio piger ATCC 29098] gi|212673717|gb|EEB34200.1| hypothetical protein DESPIG_00887 [Desulfovibrio piger ATCC 29098] Length = 542 Score = 289 bits (740), Expect = 1e-75, Method: Composition-based stats. Identities = 81/506 (16%), Positives = 174/506 (34%), Gaps = 42/506 (8%) Query: 308 SDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVF 367 ++ + +FS KG Y W ++ + + + + + Sbjct: 49 NELGDGLLFSYLFKGRHAYVGQADEWIWWSGHHWSVDLIEKGHRARADVEHVAQAYYTTG 108 Query: 368 D----LSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLE-----AGSIFSIT 418 L+++ E + + R + + + LE S +I Sbjct: 109 AHFDRLAKDAERDGDKESAGRLKAKAEKMKARAARLRTETGRKRCLEFAKTNLESPLAIA 168 Query: 419 SDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPF-VEGEPSQEFLDLVSGYF 477 D +D L +G++DL TG+ + ++ KS+ + P + V+ Sbjct: 169 GDEIDRDPWSLPMANGVVDLRTGEIRPGRPDDWLVKSSPVEWQGIDAPCPHWEHFVTEIM 228 Query: 478 ES-EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA--- 533 E+ + R G + G + F+ + G G +GK + +I+ G Q A Sbjct: 229 GDDPEMAAFLQRVFGYGVTGLAREHIFLVLLGRGRNGKGIMTEVIQTVLGGQNATTALAG 288 Query: 534 ---EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR 590 + Q + A +P ++ L G RI SET+E + A++K +GG+ +T R Sbjct: 289 PVQSEMLLDQGKNRSAAGPSPDIMSLRGLRIAFASETDEGQRFSPARVKWFSGGETLTGR 348 Query: 591 LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFA------ 644 + + ++ N D A+W R +++ F +R Sbjct: 349 YPHDKRNVSFAPTHLLALLTNHKPHAPASDFAFWERLLLVDFPLSFVDRKPQNENERPMD 408 Query: 645 ---QKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCC 701 + + W ++G + G+ P +A E R+ D ++D+CC Sbjct: 409 KGLKDRLLQELPGIAAWLVRGCLEWQRVGIAP--PAKVREATSEYRRDEDLLADFVDECC 466 Query: 702 DI----GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIE 757 D+ + ++ L ++ + ++ + +K IS + + ++ Sbjct: 467 DLQQEGQPEIRSKASDLYDAFCAWFKRNV-SAKKTISQKAFGKMMLER---------FQR 516 Query: 758 KEWKSKRIIKGLKLKPAFESVDDNSN 783 + G+ + P + D Sbjct: 517 ERKGGTYYYFGVSVSPHAQLELDQEE 542 >gi|218529937|ref|YP_002420753.1| hypothetical protein Mchl_1974 [Methylobacterium chloromethanicum CM4] gi|218522240|gb|ACK82825.1| phage/plasmid primase, P4 family [Methylobacterium chloromethanicum CM4] Length = 485 Score = 289 bits (739), Expect = 1e-75, Method: Composition-based stats. Identities = 101/523 (19%), Positives = 187/523 (35%), Gaps = 45/523 (8%) Query: 266 NYKWDTFDFE--EIGDTAKKRSTFTSLFY-HHGKLIPKGLLASRFSDAYNKAMFSIYKKG 322 + +FD E ++G ++ R + + + + F+ G Sbjct: 1 MRDFPSFDAELDDLGPESENRWSRDGNDEPEPKRKLKLDHNGEPLNQDSAAQAFAQRYAG 60 Query: 323 HFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKS 382 LY D+ WY+ W+ K + F +E + +L E D + S Sbjct: 61 RLLYCHDSAKWYE--------WTGVAWKPNRCGIAF-HWSRELIRELFAEKSDRTRYIAS 111 Query: 383 PRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQ 442 + + + ++T + D+ LG G +DL TG+ Sbjct: 112 KVEFAGGIEKYCRHD---------------PALAVTIEGWDADPWLLGTPGGTVDLRTGE 156 Query: 443 KVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQ 501 K +E +TK T E +L + + + + G L G Q Sbjct: 157 LRKAHREERVTKLTAVAPAEASGCPTWLRFLDDVTQGDAGYIRFLQQWAGYCLTGDTSEQ 216 Query: 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRI 561 G GG+GK L++++ + V A + + + L G+R+ Sbjct: 217 VLCFAFGGGGNGKGVLIHVLAGILKDYAVNAAMETFTASK----HDRHPTEIAALRGARL 272 Query: 562 VIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDD 621 V SET + + A+IKQ+TGGD M AR + + E I+ N + N DD Sbjct: 273 VTASETEQGRQWAEARIKQLTGGDTMRARYMRQDEF-EFTPVLKLLIIGNNKPGLSNVDD 331 Query: 622 AWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLK 681 A RR+ ++PF A D +KL +W ++G + + + P+V Sbjct: 332 AARRRFNLLPFLFKPAVPDPRLEEKL-RAEWPAILRWMIEGCLDWQAN--RLVRPDVVKV 388 Query: 682 AKEEERQGTDTYQAWIDDCCDIG---ENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738 +E DT+ W+++ C + + L S++E+ + + Sbjct: 389 VTDEYFSAQDTFSLWLEERCVVDRANPYRKATTQDLFASWTEFARLNNE---PPGTLTSF 445 Query: 739 TLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDN 781 +++ GF + R +G++++P F S D Sbjct: 446 GERMEKLGFKKNKHVPTV--VGSRARGFEGIEVRP-FPSRDAG 485 >gi|291563668|emb|CBL42484.1| phage/plasmid primase, P4 family, C-terminal domain [butyrate-producing bacterium SS3/4] Length = 496 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 85/500 (17%), Positives = 175/500 (35%), Gaps = 36/500 (7%) Query: 285 STFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIW 344 S + +H + + +S+ +F + Y + K+WY + Sbjct: 20 SKMYLIKQYHPEKADETSSGFEWSEMGMANLFGLLYSHEARYCPEHKSWYTYHEG----- 74 Query: 345 SLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKS 404 + + +K+ V + + + + + + K Sbjct: 75 ---AWRKDEGAILVSEKIKDFVRLMILYCGEIEDDDTRKSYTGFVNKMGDRRMRDRILKD 131 Query: 405 TAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFV--E 462 A I++ D+ + +G DL + + + ++T T + Sbjct: 132 AAGE------LRISAVRFDADPYLINCLNGTYDLRDFSFREHSWDDFLTMQTAFSHTISK 185 Query: 463 GEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVG-GSGKSTLMNL 520 + + + E+ D+ R +G ++LG + + + G +GKSTL+N Sbjct: 186 TVKCKRWEKFIKEVTQNDEDKADFLQRALGYSMLGMSNEECMFILHGKTTRNGKSTLLNT 245 Query: 521 IKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQ 580 I+ G+ + +R +A A+P+L L G R V +SE+NE +++ KIKQ Sbjct: 246 IETMLGDYAKVAPVGMICRGDRQKDAEAASPTLAGLKGKRFVTMSESNEYGKLDEEKIKQ 305 Query: 581 MTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--AN 638 +TGG+ ++AR Y + FT ++ N V + R V+ F++ Sbjct: 306 LTGGEEISARALY-QSAITFKPQFTLWLSCNDLPMVTDKSLFASERIKVVEFNRHFSPEE 364 Query: 639 RDASFAQKL-ETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWI 697 +D +L E W ++G Y +GL + + + D ++ Sbjct: 365 QDTHLKDELCEQSSMSGIFMWLVRGYIHYKERGL--AMSGSLKSVVTKYERDNDLVLQFL 422 Query: 698 DDCCDIGENLWEES----HSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKR 753 ++ C+ + L ++ + + E Y +S R +++ K Sbjct: 423 ENRCERVPEESSPTVIKAKDLYNAFKIWAKSEGAYI---LSARKFNSEMERHPEWFDRKS 479 Query: 754 EKIEKEWKSKRIIKGLKLKP 773 GLKLK Sbjct: 480 TSSGYAT-----YCGLKLKE 494 >gi|319647188|ref|ZP_08001410.1| hypothetical protein HMPREF1012_02449 [Bacillus sp. BT1B_CT2] gi|317390535|gb|EFV71340.1| hypothetical protein HMPREF1012_02449 [Bacillus sp. BT1B_CT2] Length = 642 Score = 288 bits (737), Expect = 2e-75, Method: Composition-based stats. Identities = 104/649 (16%), Positives = 214/649 (32%), Gaps = 73/649 (11%) Query: 5 QWKEQAKQAIHNGFKLIP--LRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGE 62 QW + +P + + W + + G GF+ + Sbjct: 31 QWILWRSEERDGKKTKVPYQIDGSMAQSSNKRTWSTFPTVLKFYNDRDYDGIGFMF-SKD 89 Query: 63 QPLYAFDIDS--KDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120 P DID +D + ++ + + K + I + + Sbjct: 90 DPFIGIDIDHCVEDGVLSPFAEEIVQAISSYTEYSPSGKG-VHIITKGKIPLRGPGTGRK 148 Query: 121 STQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEI 180 + + L++ G+YF + + ++E E K+ ++ Sbjct: 149 NPELGLEVYRHGRYFTFTG---------------NSLGIGAVEERTDELKELFEKYLKDK 193 Query: 181 TVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSH--DEWIPVVMAVHH 238 S+ +N +N++ R + ++ +NG D+ MA+ + Sbjct: 194 KEESKPSNPPAASSRDMSNLSNKEIWERMFNSKNGKSIQDLFNGHLINDDHSATDMALCN 253 Query: 239 ---------------ETRGSSKGKEIARRW-SKQGSTYDEENFNYKWDTFDFEEIGDTAK 282 R S +E R S G+TY E + + Sbjct: 254 HLAFWTDKDPAKMDSMFRESGLYREKWDRQHSSDGATYGEMTIAAAIYSTHTTISDLLEE 313 Query: 283 KRSTFTSLFYHH--------GKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWY 334 ++ ++ H K I ++ N Y + Y Sbjct: 314 QQEQPYEVYISHPNNSQVEDTKEIIDTPPVFHLTELGNAERVVYYHGKNIRYC------- 366 Query: 335 KKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQ 394 ++ + IW+ + S + + L E + + + D+ ++ Sbjct: 367 --NELDWLIWNGKRWEE-DSKRKIEAITAKTLRALYGEAKATEDKFRKKQL---NDWAKK 420 Query: 395 NVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITK 454 N + + L+ + S+ LDS +G++DL+TG+ + ++L TK Sbjct: 421 CERRNIRMNTI---LDVRPMVSVRKQELDSHKYLFNCDNGVIDLKTGELLPHDRDLLFTK 477 Query: 455 STGTPFVEGEPSQEFLDLVSGYFESE------EVMDYFTRCVGMALLGGNKAQRFIHIRG 508 + + + + F + E++D+ + +G +L G Q + G Sbjct: 478 ISPISYQPDADCPNWKTFLESIFIDDQGTPNYEIIDFMQKAIGYSLTGDTTEQVMFFLFG 537 Query: 509 VGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN 568 G +GKST +N +++ FG+ + I + N + RL G+R V E+ Sbjct: 538 NGRNGKSTFINTVQHLFGDYGRQTNSDTFIKKK---NDSAINNDIARLDGARFVSAVESE 594 Query: 569 ENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVR 617 E +++ + +KQ+TGG+ M+AR Y E F F N V+ Sbjct: 595 EGQQLSESLVKQITGGEKMSARFL-RQEYFEFTPEFKVFFTTNHKPIVK 642 >gi|159039260|ref|YP_001538513.1| P4 family phage/plasmid primase [Salinispora arenicola CNS-205] gi|159039311|ref|YP_001538564.1| P4 family phage/plasmid primase [Salinispora arenicola CNS-205] gi|157918095|gb|ABV99522.1| phage/plasmid primase, P4 family [Salinispora arenicola CNS-205] gi|157918146|gb|ABV99573.1| phage/plasmid primase, P4 family [Salinispora arenicola CNS-205] Length = 874 Score = 288 bits (736), Expect = 3e-75, Method: Composition-based stats. Identities = 92/491 (18%), Positives = 173/491 (35%), Gaps = 45/491 (9%) Query: 301 GLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLV 360 ++A Y W D + L+ Sbjct: 419 NPEQFGPTEAGMARALVANHGEVLRYCPQRARWLMWDGHRWT------WDDAEQHRELLL 472 Query: 361 SMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSD 420 ++ + + + + W R + + AQ D Sbjct: 473 ALADRIPN--------------DKEWATFRKRAMSAAGVTGIARLAQH---NPHVVAHFD 515 Query: 421 LLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFES- 479 LD+++ L GI+DL TG T+ST P + + ++ F Sbjct: 516 DLDANAWELNTPAGIVDLRTGTVRAAEPAALHTRSTAVPVDLTADPGRWNEFLADTFGDN 575 Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539 +E++ Y R VG +++G G GG+GK + + G+ + Sbjct: 576 DELITYLRRLVGYSVVGHVGPHVLPFCHGSGGNGKGVFLEALAGVLGDYATTAPVGFLMA 635 Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599 Q + RL GSR+VI SE NE+D + AK+K +TGGD +TAR + + Sbjct: 636 Q----SHPGHETEIARLAGSRMVICSEVNEDDRFDEAKVKMLTGGDSLTARFMRQDHF-T 690 Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD--ASFAQKLETKYTLEAKK 657 + +++ N VR+ ++WRR +IPF+ + L + Sbjct: 691 FTPTHQLWLMGNHQPAVRSGGRSFWRRLRLIPFNHEVPEEKIVDDLQGILVRDHGPALLA 750 Query: 658 WFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDI--GENLWEESHSLA 715 W G Y + GL P+ A E D+ ++ +CC + GE++ ++ + Sbjct: 751 WITAGTTQYHASGLQ--EPDSVKAATAEYAHDQDSVAKFVQECCHLGGGEHVTIKTAKVR 808 Query: 716 KSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAF 775 ++Y ++ E +S + + L+++ + + + R+ L L Sbjct: 809 EAYEQFCYAEGET---PVSAKALGTALEKR-------FKVLRLRTPAARLYGNLSLLIDE 858 Query: 776 ESVDDNSNIID 786 ++ D S+ D Sbjct: 859 DASSDASSTRD 869 >gi|301058441|ref|ZP_07199462.1| phage/plasmid primase, P4 family, C-terminal domain protein [delta proteobacterium NaphS2] gi|300447497|gb|EFK11241.1| phage/plasmid primase, P4 family, C-terminal domain protein [delta proteobacterium NaphS2] Length = 512 Score = 287 bits (734), Expect = 4e-75, Method: Composition-based stats. Identities = 93/481 (19%), Positives = 181/481 (37%), Gaps = 33/481 (6%) Query: 309 DAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFD 368 + +F+ +G F++ D+ W+ ++ I + + + Sbjct: 44 EVGAGIIFARLHEGKFIFNKDSLEWWVWAGHHWVIDKMNNALKDVEKVALWYIGQAIALS 103 Query: 369 LSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEA------GSIFSITSDLL 422 E + N + + + ++ Q ++S+ Sbjct: 104 KQIEKAGSQNNKATIEKLQRDQRLCNKMVARLRTETGRQICLKTAHSNHVLSLEVSSEQF 163 Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVE-GEPSQEFLDLVSGYF-ESE 480 D ++G++DL+TG+ YITK++ + P+ E+ ++ Sbjct: 164 DQDPWLFACKNGVIDLQTGEIRPGRPHDYITKASPVGWEGIEAPAPEWERVLLEIHNGDI 223 Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540 E++ Y R G A++G G G +GK+T I G+ + Q Sbjct: 224 EIVRYMQRLYGSAIVGKTSEAVVPVQCGGGRNGKTTENETIAAVVGDMAGPIPSQMLLDQ 283 Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600 R + +P L+ L G RI SE E +AA++K ++G D +TAR + ++ Sbjct: 284 GRYQNSAAPSPDLMDLKGLRIAFASEIEEGRRFSAARVKWLSGSDTITARAPHDRRSTKF 343 Query: 601 PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR----------DASFAQKLETK 650 + T F++ N D A+W R +IP++ +R D +KL T Sbjct: 344 RPTHTLFLMTNSKPGAPANDFAFWSRVNLIPYEISFVDRQPKTPNERRIDKHIPEKL-TS 402 Query: 651 YTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEE 710 W ++G + GL PE L A E+ R+ D Q +ID+ C + + E Sbjct: 403 EYPGILTWLVRGCLQWQKMGLCP--PEKVLAATEQYRRDEDFLQDFIDEYCFVDPSETES 460 Query: 711 SHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLK 770 + L ++ Y N +K S ++ + G + +++++ +GL+ Sbjct: 461 AADLYDAFKGY--WTSNVSKKPPSRKSFGQMI-------GSQFKRVKRSTIR---YEGLR 508 Query: 771 L 771 L Sbjct: 509 L 509 >gi|303245321|ref|ZP_07331605.1| phage/plasmid primase, P4 family [Desulfovibrio fructosovorans JJ] gi|302493170|gb|EFL53032.1| phage/plasmid primase, P4 family [Desulfovibrio fructosovorans JJ] Length = 545 Score = 287 bits (733), Expect = 6e-75, Method: Composition-based stats. Identities = 89/499 (17%), Positives = 182/499 (36%), Gaps = 48/499 (9%) Query: 311 YNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDK-----ITASIMNFLVSMKED 365 + +++ KG L + K+ + W+ K +++ +V+ E Sbjct: 52 GDGILYAAVHKGTLLCAPELKSQ-------WFEWTGAYWKQVTVYRAEALVEAVVAQYEQ 104 Query: 366 VFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEEN--------SKAKSTAQSLEAGSIFSI 417 +E K ++ + + +N + + +L + Sbjct: 105 TRLETELKISEVKQARDDEAEKRLQRLSKRLRKNVDDLREGSGVSAALRFALSNDDPLLV 164 Query: 418 TSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPF-VEGEPSQEFLDLVSGY 476 + D+ LG +G++DL TG+ K + ++ G + P + V Sbjct: 165 RMEEFDADPYLLGVANGVVDLHTGEFRKARPGDRVRRTCGVEWQGIDAPVPLWPSFVQEI 224 Query: 477 FES-EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535 EV + R G A+ G + F+ + G G +GK+ ++ + G+ Sbjct: 225 VGDDPEVAAFLQRVFGYAITGLSCEPLFVVLAGDGRNGKTVMVETLGKVLGDYMAPIPAE 284 Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595 + Q + +A K P+++ L G RI +E++EN + A++K ++G D +T R + Sbjct: 285 LLLDQGQARDADKPTPTIMSLNGLRIAYATESDENRRFSIARVKWLSGDDRLTGRYMWDR 344 Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN---------RDASFAQK 646 S + T F++ N + A+W R ++ F + RD + ++ Sbjct: 345 DPSSFYPTHTLFLLTNHKPHAGAHEYAFWDRLRLVNFPYRYVDKPTREHERQRDRTIPER 404 Query: 647 LETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDC-CDIGE 705 LE K W ++G + G+ P L A EE ++ D Q ++D+C Sbjct: 405 LE-KELPGILAWLVRGCLLWQRDGIAP--PASVLAATEEYQREEDHVQDFVDECLLTTDP 461 Query: 706 NLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKR- 764 + ++ Y+ + + + S L +K I K+ K Sbjct: 462 TDRVSATAIYDLYTRWYFKNR--GKYVPSMNAFGKQLGRK----------IHKDRKGGTV 509 Query: 765 IIKGLKLKPAFESVDDNSN 783 G++L P E + Sbjct: 510 YYYGVQLNPVAEDAYPDKR 528 >gi|227830424|ref|YP_002832204.1| P4 family phage/plasmid primase [Sulfolobus islandicus L.S.2.15] gi|227456872|gb|ACP35559.1| phage/plasmid primase, P4 family [Sulfolobus islandicus L.S.2.15] Length = 885 Score = 286 bits (730), Expect = 1e-74, Method: Composition-based stats. Identities = 119/864 (13%), Positives = 249/864 (28%), Gaps = 143/864 (16%) Query: 1 MPVMQWKEQAKQAIHNGFKLIPLRLGDKRP--QRLGKWEEQLLSSEKIDKL-----PACG 53 M +QW AK I +GF + P+ K+P + K+ L+ E+ + Sbjct: 1 MDKLQW---AKWFIDHGFAIFPIDAETKKPVIKEWQKYSTTPLTDEEKKQYLEMIEKGYN 57 Query: 54 FGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGI 113 + G Q L D + K+ A +D L + + + L + E Sbjct: 58 YAVPGGQ--QNLVILDFEDKELLKAWISEDELNKLCKSTLC-VDTPHGGLHVYVTADEIP 114 Query: 114 KKKKTT---ESTQGHLDILGCGQYFVAYNI---H--------PKTKKEYTWTTPPHRFKV 159 K + +G D+ Y VA H P ++Y P+ Sbjct: 115 DHKFNPMFEKDGKGVADLQSFNSYVVAPGSCINHKFCTSDKCPWKGQDYVTCYIPNNNI- 173 Query: 160 EDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGE 219 +++ED++ L KF + + + S + + + T +I + Sbjct: 174 ----NINKEDLKELLKFLADKGKKIGIELSSSARAWLYEKEKEEESTPEDIKKLQEEMAK 229 Query: 220 -EFYNGSHDEWIPVVMA--VHHETRGSSKGKEIARR---WSKQGSTYDEENFNY---KWD 270 + Y G + I + + S K K+I + + Y + + W Sbjct: 230 YDRYKGKTIDAIRSDVCKKLKENVEPSKKTKQIFKTVYGVVCEKKNYSDLGLDRSRGDWH 289 Query: 271 TFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYK---------- 320 + T + A ++ + + +K Sbjct: 290 VITIL-LSLGVTNVETLKRFL-----PNDSKVFAPKWGKYFAHTLKKAWKFAKHALEFQV 343 Query: 321 ------------------KGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSM 362 L K + + +N I + + Sbjct: 344 QINGKKETEAKKIAKTIITDAILERFKIKTFRQVTGHNQAIIGVFTWDKKKGVYVPF--- 400 Query: 363 KEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLL 422 +++ + + + +R + + K + Sbjct: 401 DKEIRKAIRRTAELLEIRSRDKKTLARLSKRDVDDIFDEIKDLTLTPLPKEPLR------ 454 Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGE-PSQEFLDL--------- 472 + +G L+ + + K ++ E +E Sbjct: 455 ------IAFTNGTLEWTDTGLMWHDAKERSPKIYAFYYLPWEVKIEEIEKFQGKEITVQD 508 Query: 473 ---------------VSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTL 517 + + + V +G L K ++ + G G +GKST Sbjct: 509 IEQLARGLCPKSLEAFKSWVDDKWV--TLFEIIGYTLYPEIKFRKAFMLVGEGKNGKSTF 566 Query: 518 MNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK 577 +NL+K G + + + + L ++E+ + + + Sbjct: 567 INLVKKILGEYAISISPRELFD-------SQNRFIVSNLYHKLANAVAESKDYSIDDMDR 619 Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRN-PDDAWWRRYIVIPFDKPI 636 K++TGGD TA + + + + N ++R+ D A+W R+I+I F Sbjct: 620 FKRLTGGDWFTADVKFKDP-ITFKNIAKLIVASNNMPYIRDTNDKAFWHRWIIIEFPHQF 678 Query: 637 ANRDASFAQKLETKYTLEAKK-WFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQA 695 + D F + L + K D + E + + TD+ A Sbjct: 679 PDDDTWFDKTFTEDEINGIVTVSLLAFARTVQRKHFDFEQTE--REVMDIWLSRTDSVYA 736 Query: 696 WIDDCCDIG--------ENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGF 747 +I + G +LW + L + Y +Y + K + + +++ Sbjct: 737 FISEYTKRGIITLDPKNADLWVKRVELYRLYKDYCIDQG---FKGVGGKAFARRVRE--- 790 Query: 748 IGGIKREKIEKEWKSKRIIKGLKL 771 GI + K R G+ + Sbjct: 791 YFGIMTVLKNVDGKRVRAFVGITI 814 >gi|217978348|ref|YP_002362495.1| P4 family phage/plasmid primase [Methylocella silvestris BL2] gi|217503724|gb|ACK51133.1| phage/plasmid primase, P4 family [Methylocella silvestris BL2] Length = 554 Score = 286 bits (730), Expect = 1e-74, Method: Composition-based stats. Identities = 80/474 (16%), Positives = 152/474 (32%), Gaps = 37/474 (7%) Query: 295 GKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITAS 354 I L +D N F+ K + Y D W + Sbjct: 53 ADSINLHLAHFPLTDLGNAERFAARHKDNLRYCPDIG---------WLHWDGRRWAREGA 103 Query: 355 IMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDY------RRQNVEENSKAKSTAQS 408 + V + +E ++ F + S+A + S Sbjct: 104 EEVVKRAEHVTVRAIQDEAVALRESGHDAVFIDAKGKETLLSDKIAVWGRTSEAANRMAS 163 Query: 409 L--EAGSIFSITSDLLDSSSRFLGEQDGILDLETGQ------KVKPTKELYITKSTGTPF 460 + A S+ SI LD+ + +G L + + YITK + + Sbjct: 164 ISKRADSMLSIQVGDLDADKMKISVANGTLHIAKRDDGPYVVLKRHDPADYITKISPVGY 223 Query: 461 VEGEPSQEFLDLVSGYFESE-----EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKS 515 + + + +V + + G++L G Q+ G G +GKS Sbjct: 224 DAEAVCPRYDRFLDEVQPPDAAGGRDVQIFLNQWAGLSLTGDTSEQKITFHYGKGRNGKS 283 Query: 516 TLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA 575 + I + G+ S + R G+A P L L G R++ SE + ++ Sbjct: 284 VWVKTISFVAGDYADSIPIESFLDSGRARAGGQATPDLAGLPGVRMLTTSEPKKGATLDE 343 Query: 576 AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP 635 IK +GGD + AR + + N + D+ W R +++P+ Sbjct: 344 GLIKLFSGGDVIKARHLNK-GFFAFTPQAKLTMQGNYRPRITGADEGIWNRLVLVPWGVY 402 Query: 636 IA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTY 693 RD +KL L G+ A++ GL IP A + R +D Sbjct: 403 FPADKRDPRLEEKL-RGEASGVLNRLLDGLCAWLDGGLR--IPSSVAAATADYRSDSDPL 459 Query: 694 QAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGF 747 +++ C ++ + ++ + + S + + +K++G Sbjct: 460 GRFLEACTRQAIGKRVQATDMHALFAAWAKSNGEA---VWSAKGLGAAMKERGL 510 >gi|157310960|ref|YP_001468956.1| putative DNA primase [Corynebacterium phage P1201] gi|95832108|gb|ABF57508.1| putative DNA primase [Corynebacterium phage P1201] Length = 881 Score = 285 bits (729), Expect = 2e-74, Method: Composition-based stats. Identities = 145/871 (16%), Positives = 271/871 (31%), Gaps = 128/871 (14%) Query: 8 EQAKQAIHNGFK-LIPLRLGDKRPQRLG-----KWEEQLLSSEKIDKLPACGFGFVCG-- 59 E A++ I G+ PL G K P G + E D + G Sbjct: 30 EVAEEYIRKGWTAPFPLPEGQKSPPIPGVTGGVPYITPERIEELWDGVEGANLGLRLQSD 89 Query: 60 -VGEQPLYAFDIDSKDEKTANTFKDTFEILHGT--------PIVRIGQKPKILIPFRMNK 110 G Q + + DID K + E G+ R + P I FR+ Sbjct: 90 VEGSQEIISIDIDHYGTKRGDDHLRELESQLGSLNRDSVWRSTRRGIRNPSGQIFFRVPP 149 Query: 111 E-GIKKKKTTESTQGHLDILGCG-QYFVAYNIHPKTKKEYTWTTPPH-----RFKVEDTP 163 + K ++DI+ G +Y V + +Y W +P V+D P Sbjct: 150 GLKWESKACI-----NVDIVQMGHRYSVVWPSVSG-DSQYKWISPEGVFADSPPYVKDLP 203 Query: 164 LLSEEDVEYLFKFFQEITVPLVKDKKS----------------IIPSKTWTNNNNRQYTN 207 + E V +L + + + + W + + ++ Sbjct: 204 EMPEAWVTHLTNGVKRGAFTAKSSRSTFTGSGGDKYRAAIDWLRLNLPGWVSKVSEDGSS 263 Query: 208 REITAFLS--------CFGEEFYNGSHDEWIPVVMAVHHETRG---------------SS 244 + + F ++ N HD +V AVH R S Sbjct: 264 DKSSMSNPLAKVSSGEKFLDDIQNNGHD---TMVSAVHSAIRLGVEGHAGVKVALGTISD 320 Query: 245 KGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTF-------------TSLF 291 + E ++ + E F + T + Sbjct: 321 RFYEAVIEGQRRSRSSAEAEFERAVVGEVERVREEIEAGDLTIFQESADFAVGNLSDLIV 380 Query: 292 YHHGKLIPKGLLASRF---SDAYNKAMFSIYKKGHFLYTADTKA------WYKKDKNNVY 342 + P+G+ +D N +++ Y L + + W K + Sbjct: 381 SAESERKPQGITRLSSYGDNDFDNARIYASYWGTDVLVDPNAETSKRFARWSSKMGRFTF 440 Query: 343 IWSL-----------TLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDY 391 K A V E+ + E+ + +S + + Sbjct: 441 SSRGEMYNTVAIGLAQRLKYEAEQRELEVMALEEKAAKGQITEEESDMIESLQAMADNLN 500 Query: 392 RRQNVEEN-SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDG-ILDL--ETGQKVKPT 447 RR + N L + +++ DS +LG G LDL ET + Sbjct: 501 RRSSRLLNTPAMNHVLDQLSSIDEIKVSALDFDSIGEYLGVAGGKTLDLSEETFRVRDSE 560 Query: 448 KELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIR 507 K +T ST F + + + + + + + +G +L+ GN + + + Sbjct: 561 KSDMLTMSTRAIFQKNATHPNWEKFLERFLPDPTLRRFVQKVMGYSLVDGNPEKVMVFLF 620 Query: 508 GVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISET 567 G +GK+T++ I A G+ + G N ++ + R+V +SE Sbjct: 621 GPNHTGKTTILEAIGSALGDYASPINAVKLL----GRNTGGPNSEVLANVNRRMVFMSEI 676 Query: 568 NENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627 + E++A +KQ+TG D R + SFTP++ N ++ D+A R Sbjct: 677 GTDYELSANSLKQVTGNDSQQLRGVHSAEVIAKTPSFTPYVATNSIPGIQGGDEALSNRL 736 Query: 628 IVIPFDK----PIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDI-PEVCLKA 682 ++IPF+K + ++ F+ + W L+G + Y +GL D PE+ Sbjct: 737 LIIPFNKSNKFSVKKEESIFSPMVY----PAIFWWLLEGFQMYKEEGLSRDEWPEIIRDT 792 Query: 683 KEEERQGTDTYQAWIDDCC--DIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTL 740 ++ + + + ++ + E S Sbjct: 793 SQKFSGEISPVHEFASRHLAKVSDKKTIALREEVDMAWKTFAVDEGIPIHN-FSLNEFHK 851 Query: 741 NLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771 LK GF R + + +G++L Sbjct: 852 TLKSLGFTSA--RTTVNGTPNRH-VYRGVQL 879 >gi|169825390|ref|YP_001691283.1| hypothetical protein M446_7040 [Methylobacterium sp. 4-46] gi|168199312|gb|ACA21258.1| hypothetical protein M446_7040 [Methylobacterium sp. 4-46] Length = 450 Score = 283 bits (724), Expect = 7e-74, Method: Composition-based stats. Identities = 81/437 (18%), Positives = 147/437 (33%), Gaps = 33/437 (7%) Query: 334 YKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR 393 Y + + W+ T + F V + + ++ Sbjct: 39 YDHGQALWFEWAGTCWVPDTTGGVFDRC--HTVVQ--------------EQMRLLSPKKQ 82 Query: 394 QNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYIT 453 + + F S+ D LG G++DL TG+ + IT Sbjct: 83 VRLGTAKFVSGVEKLCRHARTFVAQSEDWDGDPMVLGTPGGVVDLTTGKMRRAEPGDRIT 142 Query: 454 KSTGTPFVEGEPSQEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGS 512 K T + FL ++ +M + + G +L G + + G GG+ Sbjct: 143 KQTAVAPADTADCPRFLRFLNEATGSDLGLMRFLQQWAGYSLTGRTTEHAVVFVFGGGGN 202 Query: 513 GKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDE 572 GKS + ++ A + + + + L L G+R V SET E Sbjct: 203 GKSVYLKVLATALASYAATATMDAFVASK----HAQHTTDLAMLKGARFVSASETQEGRA 258 Query: 573 INAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF 632 + A++K TGGD +TAR + + + IV N +R D+A RR ++PF Sbjct: 259 WDEARLKSFTGGDAITARFMHRDNM-TFVPTCKITIVGNHKPKIRTVDEAMRRRLNIVPF 317 Query: 633 DKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDT 692 + A D +KL +W + G + GL P+ L A +E D Sbjct: 318 IRKPAEPDPDLERKL-LAELPGILRWPIDGCLDWQEHGL--IRPDAVLAATDEYLADEDL 374 Query: 693 YQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIK 752 + W++D C + + Y+ + + + + + L + G Sbjct: 375 FGQWVEDRCKVDPGNRQMRTPNQDLYASWCDFAERVGARHGTLHELGEKLSKLGLA---- 430 Query: 753 REKIEKEWKSKRIIKGL 769 + R +G+ Sbjct: 431 ----RYKSGGVRGFEGI 443 >gi|148257830|ref|YP_001242415.1| putative phage / plasmid primase P4 [Bradyrhizobium sp. BTAi1] gi|146410003|gb|ABQ38509.1| putative Phage / plasmid primase P4 [Bradyrhizobium sp. BTAi1] Length = 624 Score = 283 bits (724), Expect = 8e-74, Method: Composition-based stats. Identities = 85/555 (15%), Positives = 162/555 (29%), Gaps = 92/555 (16%) Query: 271 TFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADT 330 F+ D A + + I +D N + ++ D Sbjct: 45 NFEGAGEEDVAPADDERPADADTLPREIIVACSHEPQNDTGNGKRLLQWFGADLVHVRDM 104 Query: 331 KAWYKKDKNNVYIWSLTLDKITASI----------MNFLVSMKEDVFDLSEEPEDNNK-- 378 + W T + I +V + + E + + Sbjct: 105 G---------WHAWVGTHWEREGGIEAATRCAQKVAERIVLEADVMAATPNEQKAIDAAS 155 Query: 379 ---------------NSKSPRFWF-------------------NTDYRRQNVEENSKAKS 404 ++ + W R+ + + AK Sbjct: 156 QARDAAGAIEAAKGAEARKDQRWQMLMRVVAAGEAAQTALASRQVARRKYAISSGNAAKV 215 Query: 405 TAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQK--------------------V 444 +A +I D LD+ ++G L + Sbjct: 216 RNMLDQAMPHHTIEIDKLDADKLAFNVRNGTLCFVADEMPDPDASDHSNQVLKRWRVEFR 275 Query: 445 KPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFI 504 + + Y+TK + F + + S ++ + R G AL G Q I Sbjct: 276 EHNRADYMTKVAPVDYDPKAKCPTFDASLRRFQPSADIRRFLQRYHGYALTGLTGEQCLI 335 Query: 505 HIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVII 564 G G + KST + L+ G S I + +A+P RL G R++ Sbjct: 336 FNYGGGSNWKSTFVELMCRISGPYAQTIPFES-ISGDVQKSGSQASPEFARLPGCRLLRA 394 Query: 565 SETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWW 624 E + N + IK +TGG+ M R N+ + + E F + N + D W Sbjct: 395 GEPDPNVQFKEGLIKSLTGGEPMLTRANFKD-FFEFRPDFKIVLSGNHKPKISGVDHGIW 453 Query: 625 RRYIVIPFDKPIANRDASFAQK---LETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLK 681 RR ++P+ IA+ + W + G Y++ GL P + Sbjct: 454 RRINLVPWGITIADHEKRPMPDVLAELMAEASGILNWLVAGTLNYLNGGLKP--PPEVVA 511 Query: 682 AKEEERQGTDTYQAWIDDCCDI-------GENLWEESHSLAKSYSEYREQELNYDRKRIS 734 A R+ D A++ C + + + + ++ + ++K Sbjct: 512 ATAAYRERMDPVGAFVGQCVTVLPPPAAHAGAAFVPARQMYGAFVAWCSVN---EQKPWG 568 Query: 735 TRTVTLNLKQKGFIG 749 + +++KGF Sbjct: 569 EKAFAGVMEEKGFER 583 >gi|310831484|ref|YP_003970127.1| putative VV D5-type primase/helicase [Cafeteria roenbergensis virus BV-PW1] gi|309386668|gb|ADO67528.1| putative VV D5-type primase/helicase [Cafeteria roenbergensis virus BV-PW1] Length = 877 Score = 283 bits (724), Expect = 8e-74, Method: Composition-based stats. Identities = 101/614 (16%), Positives = 209/614 (34%), Gaps = 57/614 (9%) Query: 207 NREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGS-TYDEENF 265 + EI L ++++WI V +++ R +SK + + Sbjct: 288 DTEIAQHLIKMLSVDRASNYEDWIRVGYCLYNIDR---TLLNEWINFSKLCPSKFKKGEC 344 Query: 266 NYKWDTFDFEEI---------GDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMF 316 W + + + F +H L + A++ Sbjct: 345 ENLWKKMKSGQNMYTIRSLHRWAKEDNYLDYNT-FKNHEYNNLFKLSLTGDHQNIANAIY 403 Query: 317 SIYKKGHFLYTADTKAWYKKD--KNNVYIWSLTL---DKITASIMNFLVSMKEDVFDLSE 371 S Y+ + K WY+ + ++ +IT +N +++ ++ + Sbjct: 404 SKYQTEFVCSSIKNKVWYQYNYSQHKWEKIENGYALTSRITNEFVNEYLNLSSQLYQKAT 463 Query: 372 EPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGE 431 E E + K + + S + SL ++ LD +G Sbjct: 464 EAEPSQKMD-ILKEVEKIQGLVNRLNNESFLSTLMTSLSRRFYLPKFAEDLDEKYDLIGF 522 Query: 432 QDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE----FLDLVSGYFESEEVMDYFT 487 +G+ DL+ G E Y+T +TG + + + E + L E +Y Sbjct: 523 NNGVFDLKKGIFRNGHPEDYLTMTTGLDYQQLDTDSEEYIACMKLFEDIHPDVETREYVY 582 Query: 488 RCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAG 547 + G +K + G G +GKS L+KY G+ +++ + + + R + Sbjct: 583 TLFSTFISGHHKEETLHLFNGCGSNGKSVTFELLKYCLGDY-IMSVPVTLLTRKR-AGSE 640 Query: 548 KANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPF 607 A P L +L G R+ ++ E E ++++ +K++TG D +TAR + + Sbjct: 641 NATPMLAQLKGKRLGVLQEPEEGEKLHVGLMKELTGNDEITARPMFESP-ITFKPQIKFA 699 Query: 608 IVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR-----------DASFAQKLETKYTLEAK 656 I N V D WRR VI ++ D + +KLE + Sbjct: 700 IPCNNLPEVPARDKGTWRRLRVIDHLMEFVDKPNQKYPNQKQIDRTLKEKLE-GMAGQFM 758 Query: 657 KWFLKGVKA-YISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIG--ENLWEESHS 713 + + Y+ KG+ V P + Q + + + + ++ + + Sbjct: 759 SFLIDRYINVYVKKGMKV--PNSVTFSTNVYNQDNNCIKQFCESKFEVTGKKTDTISQKT 816 Query: 714 LAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773 + + + +Y ++E +++ I R L K K + G+ Sbjct: 817 IWEEFKQYFKEEQEGNKRPI-QREFYSYL--------DKTYGQAISGKGGKKYCGI---- 863 Query: 774 AFESVDDNSNIIDF 787 F D+ + +D Sbjct: 864 IFSGDDEENEDVDL 877 >gi|15920509|ref|NP_376178.1| hypothetical protein ST0314 [Sulfolobus tokodaii str. 7] gi|15621292|dbj|BAB65287.1| 862aa long hypothetical protein [Sulfolobus tokodaii str. 7] Length = 862 Score = 283 bits (724), Expect = 8e-74, Method: Composition-based stats. Identities = 121/834 (14%), Positives = 243/834 (29%), Gaps = 95/834 (11%) Query: 1 MPVMQWKEQAKQAIHNGFKLIPLRLGDKRPQ-RLGKWEEQLLSSEKIDKLPA-----CGF 54 M ++W AK I +GF +IPL DKRP +++++ + E+ K + Sbjct: 1 MDRVEW---AKWFIQHGFVVIPLNKDDKRPAIEWKEYQDRKPTDEEYQKFLKMIEEGHNY 57 Query: 55 GFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIK 114 + G L D + K+ A +D L + + + + E Sbjct: 58 AVLGG--HNNLVILDFEDKELLKAWIGEDELTKLCKNTLC-VNTVHGGIHIYVTADEIPP 114 Query: 115 KK---KTTESTQGHLDILGCGQYFVAYNI---H--------PKTKKEYTWTTPPHRFKVE 160 +K + +G D+ Y V H P ++YT Sbjct: 115 QKFNPAFIKDGKGIADLQSFRSYVVGPESCVNHKTCSTDKCPWKGQDYTTCYTSINNN-- 172 Query: 161 DTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEE 220 + + D++ + F E + + PS+ + E+ A + E Sbjct: 173 ---EIRKADLKGILNFLIEKGKKIGIE-----PSRGVIEWLGDRK--EELKAEDKHYEEF 222 Query: 221 FYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDT 280 V ++ G K + + +G TY + + F + Sbjct: 223 IAELKKKNKFKSVEEAKNKICGKLKHSSLEYKVICEGKTYADVGIDRSRGDFRVIKTSLY 282 Query: 281 AKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNN 340 R L K + + + + A + K K Sbjct: 283 HGLRDPDLILQVLPEDSKAKNNEKWDSRKYFLITLKNAWSVVSKYLEAKNISKEDKSKAK 342 Query: 341 VYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENS 400 + ++IT K+ + +K + T + N + Sbjct: 343 QIVIEAIAEEITREHRLVTFKGKDQAKEYVIGLFRFSKKKGIYEPFDVTIEKIINDKLEE 402 Query: 401 KAKSTAQSLEAGSIFSITSDL-------LDSSSRFLGEQDGILDLETGQKVKPTKELYIT 453 S + + +I ++ L + ++G L+ + + Sbjct: 403 YRDFPLGSDKTRVVKNIKDEIMRRTLRPLVKEPMRIAFRNGTLEWNDKDITWYDTKERTS 462 Query: 454 KSTGTPFVEGEP-------------------------SQEFLDLVSGYFESEEVMDYFTR 488 + ++ + L+ + + + + Sbjct: 463 RVYAFHYIPWSVKIDEIIKFERKEIKVQDIENLARGVCPKSLETFKSWVDDKWI--LLFE 520 Query: 489 CVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGK 548 +G L + + + G G +GKST +NL+ G V Sbjct: 521 VIGYTLYPRYDFNKAVLLVGNGSNGKSTFLNLLLKILGKNNVSAVPL-------KRIIDG 573 Query: 549 ANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFI 608 + I L I SE N K++TG D + + + + Sbjct: 574 DKFASIELYHKLANISSELFAFKITNTDTFKKLTGEDYIEGQKKFRDP-IYFINYAKLIN 632 Query: 609 VPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYIS 668 N+ V++ +WRR++VI F F + + I Sbjct: 633 STNELPVVKDQTYGFWRRWLVIEFPHQFDPDPTFFDRTFSKDEIEGIITVSILAFARVIQ 692 Query: 669 KGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE--------NLWEESHSLAKSYSE 720 + D + KE+ + +DT A+I D + G+ NL+ L Y+E Sbjct: 693 QK-KFDFEDSSADIKEKWERASDTVYAFIKDLIESGKVEYDPKNGNLFVSKKKLYSMYTE 751 Query: 721 YREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPA 774 + + ++K T T L+ + I +++ + G+KLK Sbjct: 752 WCNEN---EKKPEPQSTFTKRLESR---FRIVKQRKRIGGERDWCYVGIKLKED 799 >gi|189043238|ref|YP_001936177.1| gp86 [Mycobacterium phage Adjutor] gi|188090889|gb|ACD49671.1| gp86 [Mycobacterium phage Adjutor] Length = 983 Score = 282 bits (721), Expect = 2e-73, Method: Composition-based stats. Identities = 142/993 (14%), Positives = 264/993 (26%), Gaps = 233/993 (23%) Query: 6 WKEQAKQAIHNGFK-LIPLRLGDKR--PQRLGKWEEQLLSSEKIDKLPA------CGFGF 56 ++ + G+ +PL K+ P S + I Sbjct: 13 FRRAVEAYRERGWAGTLPLPPRSKKKPPTGYTGHTAPYPSDDDIASWLRMPKYAQGNICL 72 Query: 57 VCGVGEQP--------LYAFDIDSKD-----EKTANTFKDTFEILHGTP--IVRIGQKP- 100 G E L D+D + ++ L P + Sbjct: 73 HLGPVETRGPDGERLELIGIDVDDYEEGGKVKEGGKQLAALEAELGPLPKTYTSSSRTGV 132 Query: 101 KILIPFRMNKEGIKKKKTTESTQGHLDIL-GCGQYFVAYNI-HPKT-----------KKE 147 + F + + H+DI+ +Y + + HP + Sbjct: 133 SGIRFFLVPAQH----AWMGKAAPHIDIVCKTYRYAIVFPSWHPGEVDEETGKVITEGGQ 188 Query: 148 YTWTTP--------PHRFKVEDTPLLSEEDVE---------------------------Y 172 Y W P V D PLL + VE + Sbjct: 189 YKWRDPQGQLLDGLEDIPDVNDLPLLPDAWVERLSRGGMKLSDEDAEIDMDLNVDEMFRW 248 Query: 173 LFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPV 232 K K W + + H W Sbjct: 249 AVGTLPGSDEDAQPCSKMKAAVKYWQGQIEEDASTHDKITGSHWNLACLATEGHTGWRQA 308 Query: 233 VMA---------VHHETRGSSKGKEIARRWSKQ--------------------GSTYDEE 263 + A + + + SK + Y+ Sbjct: 309 MAAVDASVAEDTIKNRGKREISELRSEIMRSKVNALRKLKAQIDKGRRNVLTVCTCYEPS 368 Query: 264 NFNYKWDTFDF--------------EEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSD 309 + D F E + + R + P+ SD Sbjct: 369 --ADELDAFTASLNSAKAAASEPTEEREVASGEGRDGY--WRDGMPNGTPQDPGDYEQSD 424 Query: 310 AYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDL 369 N + K + Y W + + ++ + E + Sbjct: 425 QGNGDHWIDLHKDNAFYVPALGQWIMWTGKSWIVGDGCAERSYRRVKARQKRYAEQLMRR 484 Query: 370 SEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFL 429 + E + + + +R A I L+++ + Sbjct: 485 AAELKAAQDPTANAAVAMAKSWRSWATRSGDVGPIERALKAASMELGIEEGELNANPALI 544 Query: 430 GEQ---------------------------------------DGILDL------------ 438 + +G ++ Sbjct: 545 CCENGVLELDLSPLDSLADDSQSAGRNGDRGRRNGHNGRNGRNGTANVASLVEDDEEFDL 604 Query: 439 --------ETGQKVKPTKELYITKSTGTPFVEGEP-------------SQEFLDLVSGYF 477 + + +E +T STGT ++ + + + V Y Sbjct: 605 DYEAVAPNSHVRLREIRREDLLTLSTGTNYLPWQELVAGEFGKQEALYASTWARAVEMYL 664 Query: 478 ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537 EEV + + +G +LLG N+ + + + G GSGKST +N A G+ + + Sbjct: 665 PDEEVRLFLQKLLGYSLLGDNRERIVVFLHGPTGSGKSTFLNATLNALGDYADV-VDLGI 723 Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597 +R + NP+L + RIV SE ++ + ++A K++TGGD +TA L Y N Sbjct: 724 FKGDR-----QTNPALAYALPKRIVTCSEASQRNVLHADMFKRITGGDPLTAELKYSNES 778 Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETK-YTLEAK 656 + +F P+I N + D A R +V+ F++ I +D L + Sbjct: 779 VKRKPAFVPWIATNTPPSIPGADAAVVDRTVVVGFNEQIRKQDVGMNAMLSSPRAKTAVL 838 Query: 657 KWFLKGVKAYISKGLDV-DIPEVCLKAKEEERQGTDTYQAWIDDC--------------- 700 W ++G Y +GL D P E +I +C Sbjct: 839 AWAVEGWGMYRREGLRRADFPAAVKGESIEFTNQFSDVSEFISECVEEAPVSLRRKAERR 898 Query: 701 ----CDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKI 756 CD E + Y + ++ DR + + LK G+ + E + Sbjct: 899 NWRVCDWPEEWHTTVSEVYDVYVTWCQENRVADRNIMKKNGFSRQLKDYGY----RAEVV 954 Query: 757 EKEWKSKRIIKGLKLKPAFESVDDNSNIIDFKR 789 +K+ + R G KL N+ ++ ++ Sbjct: 955 KKDGFTSRTYAGFKLNS------PNARVLKLQK 981 >gi|206599705|ref|YP_002241584.1| gp86 [Mycobacterium phage Butterscotch] gi|206282887|gb|ACI06374.1| gp86 [Mycobacterium phage Butterscotch] Length = 983 Score = 281 bits (719), Expect = 3e-73, Method: Composition-based stats. Identities = 141/975 (14%), Positives = 258/975 (26%), Gaps = 227/975 (23%) Query: 6 WKEQAKQAIHNGFK-LIPLRLGDKR--PQRLGKWEEQLLSSEKIDKLPA------CGFGF 56 ++ + G+ +PL K+ P S + I Sbjct: 13 FRRAVEAYRERGWAGTLPLPPRSKKKPPTGYTGHTAPYPSDDDIASWLRMPKYAQGNICL 72 Query: 57 VCGVGEQP--------LYAFDIDSKD-----EKTANTFKDTFEILHGTP--IVRIGQKP- 100 G E L D+D + ++ L P + Sbjct: 73 HLGPVETRGPDGERLELIGIDVDDYEEGGKVKEGGKQLAALEAELGPLPKTYTSSSRTGV 132 Query: 101 KILIPFRMNKEGIKKKKTTESTQGHLDIL-GCGQYFVAYNI-HPKT-----------KKE 147 + F + + H+DI+ +Y + + HP + Sbjct: 133 SGIRFFLVPAQH----AWMGKAAPHIDIVCKTYRYAIVFPSWHPGEVDEETGKVITEGGQ 188 Query: 148 YTWTTP--------PHRFKVEDTPLLSEEDVE---------------------------Y 172 Y W P V D PLL + VE + Sbjct: 189 YKWRDPQGQLLDGLEDIPDVNDLPLLPDAWVERLSRGGMKLSDEDAEIDMDLNVDEMFRW 248 Query: 173 LFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPV 232 K K W + + H W Sbjct: 249 AVGTLPGSDEDAQPCSKMKAAVKYWQGQIEEDASTHDKITGSHWNLACLATEGHTGWRQA 308 Query: 233 VMA---------VHHETRGSSKGKEIARRWSKQ--------------------GSTYDEE 263 + A + + + SK + Y+ Sbjct: 309 MAAVDASVAEDTIKNRGKREISELRSEIMRSKVNALRKLKAQIDKGRRNVLTVCTCYEPS 368 Query: 264 NFNYKWDTFDF--------------EEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSD 309 + D F E + + R + P+ SD Sbjct: 369 --ADELDAFTASLNSAKAAASEPTEEREVASGEGRDGY--WRDGMPNGTPQDPGDYEQSD 424 Query: 310 AYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDL 369 N + K + Y W + + ++ + E + Sbjct: 425 QGNGDHWIDLHKDNAFYVPALGQWIMWTGKSWIVGDGCAERSYRRVKARQKRYAEQLMRR 484 Query: 370 SEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFL 429 + E + + + +R A I L+++ + Sbjct: 485 AAELKAAQDPTANAAVAMAKSWRSWATRSGDVGPIERALKAASMELGIEEGELNANPALI 544 Query: 430 GEQ---------------------------------------DGILDL------------ 438 + +G ++ Sbjct: 545 CCENGVLELDLSPLDSLADDSQSAGRNGDRGRRNGHNGCNGRNGTANVASLVEDDEEFDP 604 Query: 439 --------ETGQKVKPTKELYITKSTGTPFVEGEP-------------SQEFLDLVSGYF 477 + + +E +T STGT ++ + + + V Y Sbjct: 605 DYEAVAPNSHVRLREIRREDLLTLSTGTNYLPWQELVAGEFGKQEALYASTWARAVEMYL 664 Query: 478 ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537 EEV + + +G +LLG N+ + + + G GSGKST +N A G+ + + Sbjct: 665 PDEEVRLFLQKLLGYSLLGDNRERIVVFLHGPTGSGKSTFLNATLNALGDYADV-VDLGI 723 Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597 +R + NP+L + RIV SE ++ + ++A K++TGGD +TA L Y N Sbjct: 724 FKGDR-----QTNPALAYALPKRIVTCSEASQRNVLHADMFKRITGGDPLTAELKYSNES 778 Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETK-YTLEAK 656 + +F P+I N + D A R +V+ F++ I +D L + Sbjct: 779 VKRKPAFVPWIATNTPPSIPGADAAVVDRTVVVGFNEQIRKQDVGMNAMLSSPRAKTAVL 838 Query: 657 KWFLKGVKAYISKGLDV-DIPEVCLKAKEEERQGTDTYQAWIDDC--------------- 700 W ++G Y +GL D P E +I +C Sbjct: 839 AWAVEGWGMYRREGLRRADFPAAVKGESIEFTNQFSDVSEFISECVEEAPVSLRRKAERR 898 Query: 701 ----CDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKI 756 CD E + Y + ++ DR + + LK G+ + E + Sbjct: 899 NWRVCDWPEEWHTTVSEVYDVYVTWCQENRVADRNIMKKNGFSRQLKDYGY----RAEVV 954 Query: 757 EKEWKSKRIIKGLKL 771 +K+ + R G KL Sbjct: 955 KKDGFTSRTYAGFKL 969 >gi|109522857|ref|YP_655277.1| gp81 [Mycobacterium phage PBI1] gi|88910570|gb|ABD58497.1| gp81 [Mycobacterium phage PBI1] Length = 983 Score = 281 bits (718), Expect = 4e-73, Method: Composition-based stats. Identities = 141/975 (14%), Positives = 258/975 (26%), Gaps = 227/975 (23%) Query: 6 WKEQAKQAIHNGFK-LIPLRLGDKR--PQRLGKWEEQLLSSEKIDKLPA------CGFGF 56 ++ + G+ +PL K+ P S + I Sbjct: 13 FRRAVEAYRERGWAGTLPLPPRSKKKPPTGYTGHTAPYPSDDDIASWLRMPKYAQGNICL 72 Query: 57 VCGVGEQP--------LYAFDIDSKD-----EKTANTFKDTFEILHGTP--IVRIGQKP- 100 G E L D+D + ++ L P + Sbjct: 73 HLGPVETRGPDGERLELIGIDVDDYEEGGKVKEGGKQLAALEAELGPLPKTYTSSSRTGV 132 Query: 101 KILIPFRMNKEGIKKKKTTESTQGHLDIL-GCGQYFVAYNI-HPKT-----------KKE 147 + F + + H+DI+ +Y + + HP + Sbjct: 133 SGIRFFLVPAQH----AWMGKAAPHIDIVCKTYRYAIVFPSWHPGEVDEETGKVITEGGQ 188 Query: 148 YTWTTP--------PHRFKVEDTPLLSEEDVE---------------------------Y 172 Y W P V D PLL + VE + Sbjct: 189 YKWRDPQGQLLDGLEDIPDVNDLPLLPDAWVERLSRGGMKLSDEDAEIDMDLNVDEMFRW 248 Query: 173 LFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPV 232 K K W + + H W Sbjct: 249 AVGTLPGSDEDAQPCSKMKAAVKYWQGQIEEDASTHDKITGSHWNLACLATEGHTGWRQA 308 Query: 233 VMA---------VHHETRGSSKGKEIARRWSKQ--------------------GSTYDEE 263 + A + + + SK + Y+ Sbjct: 309 MAAVDASVAEDTIKNRGKREISELRSEIMRSKVNALRKLKAQIDKGRRNVLTVCTCYEPS 368 Query: 264 NFNYKWDTFDF--------------EEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSD 309 + D F E + + R + P+ SD Sbjct: 369 --ADELDAFTASLNSAKAAASEPTEEREVASGEGRDGY--WRDGMPNGTPQDPGDYEQSD 424 Query: 310 AYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDL 369 N + K + Y W + + ++ + E + Sbjct: 425 QGNGDHWIDLHKDNAFYVPALGQWIMWTGKSWIVGDGCAERSYRRVKARQKRYAEQLMRR 484 Query: 370 SEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFL 429 + E + + + +R A I L+++ + Sbjct: 485 AAELKAAQDPTANAAVAMAKSWRSWATRSGDVGPIERALKAASMELGIEEGELNANPALI 544 Query: 430 GEQ---------------------------------------DGILDL------------ 438 + +G ++ Sbjct: 545 CCENGVLELDLSPLDSLADDSQSAGRNGDRGRRNGHNGRNGRNGTANVASLVEDDEEFDP 604 Query: 439 --------ETGQKVKPTKELYITKSTGTPFVEGEP-------------SQEFLDLVSGYF 477 + + +E +T STGT ++ + + + V Y Sbjct: 605 DYEAVAPNSHVRLREIRREDLLTLSTGTNYLPWQELVAGEFGKQEALYASTWARAVEMYL 664 Query: 478 ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537 EEV + + +G +LLG N+ + + + G GSGKST +N A G+ + + Sbjct: 665 PDEEVRLFLQKLLGYSLLGDNRERIVVFLHGPTGSGKSTFLNATLNALGDYADV-VDLGI 723 Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597 +R + NP+L + RIV SE ++ + ++A K++TGGD +TA L Y N Sbjct: 724 FKGDR-----QTNPALAYALPKRIVTCSEASQRNVLHADMFKRITGGDPLTAELKYSNES 778 Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETK-YTLEAK 656 + +F P+I N + D A R +V+ F++ I +D L + Sbjct: 779 VKRKPAFVPWIATNTPPSIPGADAAVVDRTVVVGFNEQIRKQDVGMNAMLSSPRAKTAVL 838 Query: 657 KWFLKGVKAYISKGLDV-DIPEVCLKAKEEERQGTDTYQAWIDDC--------------- 700 W ++G Y +GL D P E +I +C Sbjct: 839 AWAVEGWGMYRREGLRRADFPAAVKGESIEFTNQFSDVSEFISECVEEAPVSLRRKAERR 898 Query: 701 ----CDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKI 756 CD E + Y + ++ DR + + LK G+ + E + Sbjct: 899 NWRVCDWPEEWHTTVSEVYDVYVTWCQENRVADRNIMKKNGFSRQLKDYGY----RAEVV 954 Query: 757 EKEWKSKRIIKGLKL 771 +K+ + R G KL Sbjct: 955 KKDGFTSRTYAGFKL 969 >gi|46578606|ref|YP_009414.1| P4 family phage/plasmid primase [Desulfovibrio vulgaris str. Hildenborough] gi|46448017|gb|AAS94673.1| phage-plasmid primase, P4 family [Desulfovibrio vulgaris str. Hildenborough] Length = 561 Score = 280 bits (715), Expect = 7e-73, Method: Composition-based stats. Identities = 91/499 (18%), Positives = 182/499 (36%), Gaps = 45/499 (9%) Query: 306 RFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNF----LVS 361 + + + +F+ +G F+Y K W + + + W + + + + + + Sbjct: 62 KANRVGDAMLFNALHRGKFVYV---KRWGRFIRWAGHHWEEDIMETSQAAVEAVCEAYLR 118 Query: 362 MKEDVFDLSEEPEDNNK---NSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSIT 418 + +++ + K K + R + T + +IT Sbjct: 119 AVSSLSKQADDAVGDEKALLERKREELLKRVSFLRAPSGREQLLRCTHTIADP---LAIT 175 Query: 419 SDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVE-GEPSQEFLDLVSGYF 477 D LD L ++G++DL TG+ + Y+ + + P +F + Sbjct: 176 GDELDQQPFLLACRNGVIDLRTGEFRPGHPDDYVLNACPIEWPGIDAPCPQFERFMYSCH 235 Query: 478 ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGV-GGSGKSTLMNLIKYAFGNQYVINAEA- 535 E+E ++ + R G ++G + G G +GK TL+ ++ G+ + Sbjct: 236 ENEAIVSFLQRVFGYGIMGARDDHYWFVFYGARGRNGKDTLLKILTAILGDDLASTIDTA 295 Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595 + +P + +P ++ L G R+ +E + + +KIK +TGG + AR Sbjct: 296 LLLDTKQPRSSAGPSPDVLALRGKRMAFATEAEDGQKFAMSKIKWLTGGSNLMARGLQDK 355 Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN---------RDASFAQK 646 Y+ + F++ N+ + DDA+W R + +P+ + RD K Sbjct: 356 LYTTWKQTHLLFLLTNEIPRAKADDDAFWTRTLAVPWKLRFVDHPTTPDERPRDPQMEHK 415 Query: 647 LETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCD---- 702 L K W ++G Y GL+ PE L E R+ D ++ +CC+ Sbjct: 416 L-MKELPGILAWLVRGCLEYQRVGLNP--PEEVLACTRERRRAFDDVGRFLTECCEIEQV 472 Query: 703 ---IGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKE 759 I + L ++ + + S R + L +KG I K+ Sbjct: 473 VEGIEPATRTSATVLLNAF-NWWLHKNVDSSYSYSARRLGDILAKKG---------IPKK 522 Query: 760 WKSKRIIKGLKLKPAFESV 778 + G+ L P E Sbjct: 523 KSGGMVYLGVSLLPEVEDE 541 >gi|24575137|gb|AAL06708.1| putative primase/helicase [Streptomyces globisporus] Length = 474 Score = 280 bits (715), Expect = 7e-73, Method: Composition-based stats. Identities = 70/407 (17%), Positives = 143/407 (35%), Gaps = 29/407 (7%) Query: 301 GLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLV 360 GLL +D N +F + + Y W T + Sbjct: 67 GLLPDSLTDRGNAKLFVRLYAQDYRHV---------TGLGWYRWDGTRWQSDEDDT---- 113 Query: 361 SMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYR-RQNVEENSKAKSTAQSLEAGSIFSITS 419 ++ E E + + R+ S + + +++ Sbjct: 114 ----VLWVAGEMAESIAATDPRGVYSDAALRKHRRRALSTSGINALLSQARSAPGMVLSA 169 Query: 420 DLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFES 479 LD+ L G++DL +G+ + + + P+ + ++ F Sbjct: 170 GALDADPYMLCTPAGVVDLRSGKLRAADPDRDFHSRSTSIGPRQMPTPRWDLFLTDTFGD 229 Query: 480 E----EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535 + E++ + +G +L G AQ + G G +GKS L++++ G+ Sbjct: 230 DARGREMIRFLHLLLGYSLTGDVGAQVMPFLFGSGKNGKSVLLDVLIKLLGDYADAAPPG 289 Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595 + + L L G R+++ SE D + +++K +TGGD + AR Sbjct: 290 FLMARPFE----GHPTDLAELHGRRVIVCSEVKPGDRFDESRVKLLTGGDRIKARRM-RQ 344 Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDA--SFAQKLETKYTL 653 + + +++ N V A+WRR +IPFD+ ++++ + A L T+ Sbjct: 345 DFFSFAPTHKLWLLGNHRPEVGTGGYAFWRRMRLIPFDRVVSDQQKIDNLADILVTEEGP 404 Query: 654 EAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDC 700 W + G Y++ D+ PE A + D ++ + Sbjct: 405 GILNWLITGAHHYLNSPRDLTGPETVRIATTAYAETEDHTGRFLTEH 451 >gi|15921192|ref|NP_376861.1| hypothetical protein ST0954 [Sulfolobus tokodaii str. 7] gi|15621977|dbj|BAB65970.1| 902aa long conserved hypothetical protein [Sulfolobus tokodaii str. 7] Length = 902 Score = 279 bits (714), Expect = 1e-72, Method: Composition-based stats. Identities = 123/869 (14%), Positives = 271/869 (31%), Gaps = 138/869 (15%) Query: 2 PVMQWKEQAKQAIHNGFKLIPLRLGDKRP--QRLGKWEEQLLSSEKIDKL-----PACGF 54 +QW AK+ + +G+ +IP+ K+P + K+ Q LS E K + Sbjct: 3 ERLQW---AKEFVESGYAIIPIDPQSKKPVIKEWEKYSTQPLSDEDKQKFLKMVEDGYNY 59 Query: 55 GFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPF-------- 106 VCG L D ++K+ + + + + + L + Sbjct: 60 AVVCGQ--HGLVVLDFENKELLKSWIGESVVNDICSKTLC-VDTPHGGLHIYLISNDIPP 116 Query: 107 -RMNKEGIKKKKTTESTQGHLD-ILGCGQYFVAYNIH----PKTKKEYTWTTPPHRFKVE 160 + N +K +T Q + +LG N P ++YT + Sbjct: 117 HKFNPAFVKDNETVMDLQSYKSYVLGPESCINHKNCSTDKCPWRGQDYTTCYTAE-MPLG 175 Query: 161 DTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEE 220 + L S+ D++ L KFF E L + + + ++ ++ + Sbjct: 176 NVILGSDVDLKGLLKFFIEKGKKLGIEPSARLLEWLGDEVKKEDEKLEKLKEEMAKYDRF 235 Query: 221 FYNGSHDEWIPVVMAV-HHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGD 279 V + K + +++WS +T + K E D Sbjct: 236 KGKTVEAIREEVCKEISKELEELKGKDDKKSKKWSAILTTAESAVCEGK---TYAEIGID 292 Query: 280 TAKKRSTFTSLFYHHGKLI----------PKGLLASRFSDAYNKAMFSIYKK-------- 321 ++ F + + HG + A ++ Y + +++K Sbjct: 293 RSRGDWAFYYVLFSHGATNLDVLEQLLPSDSKVFAPKWDKYYVHTVKKVWEKVKPLLEFQ 352 Query: 322 --------------------GHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIM-NFLV 360 G L K +Y+ +N + + + F Sbjct: 353 AQVKGKKEKEAKKIAKSIITGTILRLHKIKTFYQVTGHNQAVIGVFKWDKKKGVYTPFDK 412 Query: 361 SMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSD 420 +++++ +++E E +++ + +R + + K + Sbjct: 413 GLRKEIREIAEMLEIRSRDKTLAQ-----LSKRDVDDIFDEIKDLTLTPLPKEPLR---- 463 Query: 421 LLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGE-PSQEFLDLVS----- 474 + ++G L+ + + K ++ E +E ++ Sbjct: 464 --------IAFKNGTLEWTEKGIIWYDAKERSPKVYSFYYLPWEVKVEEIEKFMNKEITV 515 Query: 475 -------------------GYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKS 515 + + + V +G L K ++ + G GG+GKS Sbjct: 516 KDIEELASRLCPKSLETFKQWVDDKWV--LLFEIIGYTLYPEIKFRKAFMVIGSGGNGKS 573 Query: 516 TLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA 575 T +NLIK G+ V + + L ++E+ + Sbjct: 574 TYINLIKKILGDYAVSISPRELFD-------PQNRFIAGNLYHKLANAVAESKNYTIEDM 626 Query: 576 AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDD-AWWRRYIVIPFDK 634 + K++TGGD +TA + + + I N VR+ DD A+W R++++ F Sbjct: 627 DRFKRLTGGDWITADVKFKDP-ITFKNIAKLIIASNNMPAVRDTDDKAFWHRWVLVEFPH 685 Query: 635 PIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQ 694 + D F + + + + G D + + + D+ Sbjct: 686 EFKDNDTWFDKVFTEEEINGIVTTSIMAISRAFQMG-HFDFEQNEKEVMDLWLSHIDSVY 744 Query: 695 AWIDDCCDIG--------ENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746 +++ + G +L E L K Y +Y + + + + L+ Sbjct: 745 SFVKTYAEKGILTVDPKNGDLVVEKKRLYKMYRDYCN---TMGFRGVGPNSFSRKLRTYF 801 Query: 747 FIGGIKREKIEKEWK--SKRIIKGLKLKP 773 I ++ K+ K ++ + G+ + Sbjct: 802 NISTDRKVVGYKDGKPIRRKFLVGIGINE 830 >gi|86604320|gb|ABD13938.1| predicted ATPase [Lactobacillus reuteri] Length = 333 Score = 279 bits (714), Expect = 1e-72, Method: Composition-based stats. Identities = 78/312 (25%), Positives = 131/312 (41%), Gaps = 19/312 (6%) Query: 469 FLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 + + ++ +F + +++Y VG+ +G + I G G +GKST N I G Sbjct: 35 WQEALTTFFCGDQALINYVQEIVGLVAIGQVYLEALIIAYGSGRNGKSTFWNTIANVLGT 94 Query: 528 QYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCM 587 + + R P + + G R++I +E E +N + +KQ+ D + Sbjct: 95 YTGHLSADALTTGVRR----NVKPEMAEVKGKRLIISAELEEGKRLNTSIVKQLCSTDEI 150 Query: 588 TARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD--ASFAQ 645 A Y +S S T + N V D+ WRR IVIPF IA R+ ++AQ Sbjct: 151 YAEKKYMKPFS-FTPSHTIVLYTNYLPHVGGNDEGIWRRLIVIPFKAKIAKRNDIKNYAQ 209 Query: 646 KLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE 705 +L K +W ++G + I + + P KA D ++++ C++ Sbjct: 210 RLTEKAGPAVLQWIIEGAQRTIQQNYRLTTPAAVEKAVNAYHADNDWLGHFLNENCELDP 269 Query: 706 NLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRI 765 + ++S L + Y EY + Y R ST LK GF K+ + R Sbjct: 270 SYEQKSGDLYQKYREYCQGIGEYIR---STTDFYTALKNAGFQRQHKQ--------NGRF 318 Query: 766 IKGLKLKPAFES 777 IKGL+LK + Sbjct: 319 IKGLRLKVEADE 330 >gi|46581285|ref|YP_012093.1| P4 family phage/plasmid primase [Desulfovibrio vulgaris str. Hildenborough] gi|46450706|gb|AAS97353.1| phage-plasmid primase, P4 family [Desulfovibrio vulgaris str. Hildenborough] gi|311234949|gb|ADP87803.1| phage/plasmid primase, P4 family [Desulfovibrio vulgaris RCH1] Length = 561 Score = 279 bits (712), Expect = 2e-72, Method: Composition-based stats. Identities = 91/499 (18%), Positives = 182/499 (36%), Gaps = 45/499 (9%) Query: 306 RFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNF----LVS 361 + + + +F+ +G F+Y K W + + + W + + + + + + Sbjct: 62 KANRVGDAMLFNALNRGKFVYV---KRWGRFIRWAGHHWEEDIMETSQAAVEAVCEAYLR 118 Query: 362 MKEDVFDLSEEPEDNNK---NSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSIT 418 + +++ + K K + R + T + +IT Sbjct: 119 AVSSLSKQADDAVGDEKALLERKREELLKRVSFLRAPSGREQLLRCTHTIADP---LAIT 175 Query: 419 SDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPF-VEGEPSQEFLDLVSGYF 477 D LD L ++G++DL TG+ + Y+ + + P +F + Sbjct: 176 GDELDQQPFLLACRNGVIDLRTGEFRPGHPDDYVLNACPIEWAGIDAPCPQFERFMYSCH 235 Query: 478 ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGV-GGSGKSTLMNLIKYAFGNQYVINAEA- 535 E+E ++ + R G ++G + G G +GK TL+ ++ G+ + Sbjct: 236 ENEAIVSFLQRVFGYGIMGARDDHYWFVFYGARGRNGKDTLLKILTAILGDDLASTIDTA 295 Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595 + +P + +P ++ L G R+ +E + + +KIK +TGG + AR Sbjct: 296 LLLDTKQPRSSAGPSPDVLALRGKRMAFATEAEDGQKFAMSKIKWLTGGSNLMARGLQDK 355 Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN---------RDASFAQK 646 Y+ + F++ N+ + DDA+W R + +P+ + RD K Sbjct: 356 LYTTWKQTHLLFLLTNEIPRAKADDDAFWTRTLAVPWKLRFVDHPTTPDERPRDPQMEHK 415 Query: 647 LETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCD---- 702 L K W ++G Y GL+ PE L E R+ D ++ +CC+ Sbjct: 416 L-MKELPGILAWLVRGCLEYQRVGLNP--PEEVLACTRERRRAFDDVGRFLTECCEIEQV 472 Query: 703 ---IGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKE 759 I + L ++ + + S R + L +KG I K+ Sbjct: 473 VEGIEPATRTSATVLLNAF-NWWLHKNVDSSYSYSARRLGDILAKKG---------IPKK 522 Query: 760 WKSKRIIKGLKLKPAFESV 778 + G+ L P E Sbjct: 523 KSGGMVYLGVSLLPEVEDE 541 >gi|319783591|ref|YP_004143067.1| phage/plasmid primase, P4 family [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317169479|gb|ADV13017.1| phage/plasmid primase, P4 family [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 451 Score = 277 bits (709), Expect = 4e-72, Method: Composition-based stats. Identities = 84/470 (17%), Positives = 151/470 (32%), Gaps = 46/470 (9%) Query: 305 SRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKE 364 +D F+ Y W + ++ + I+ + Sbjct: 19 KEHTDEALALEFARRHAMRTRYV---DGW-----SRWMLFDGVVWAP-DEILTVYNYARA 69 Query: 365 DVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDS 424 D + + + + + + D D Sbjct: 70 LCRDDAANALPRDGGR---------------ILSAKTVAAVVSLARSDPALAAVVDQWDE 114 Query: 425 SSRFLGEQDGILDL-ETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEV 482 L ++ L G + Y+TKST G +L+ ++ + Sbjct: 115 DPMALNCDGEVVQLGAEGCSRRVIPGDYMTKSTAV--GPGGDCSLWLEFLNLVTSGDGAL 172 Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542 +DY R G L G + G GG+GKST + I G+ + Sbjct: 173 IDYLQRVCGYCLTGLTVEHALFFLWGPGGNGKSTFIETISGVVGDYAKTAGIDTFTA--- 229 Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602 + + L L G+R+V +ET + + +IK +TGGD ++AR + E Sbjct: 230 -SASDRHPTDLAALQGARLVTATETAKGRSWDETRIKTLTGGDRISARYM-RQDFFEYSP 287 Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQ-KLETKYTLEAKKWFLK 661 F I N + N DDA+ RR+ +IPF I + + W ++ Sbjct: 288 QFKLMIAGNNKPALVNVDDAFRRRFHMIPFIVRIPDDKRILGFSDRLREEWPGILAWMIE 347 Query: 662 GVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEY 721 G + GL P + A +E DT AW+++C + + +E SL S+ + Sbjct: 348 GAGHWRRLGLSP--PPAVVAATQEYLDSEDTIGAWLEECTERVADGFESRQSLFSSWKAF 405 Query: 722 REQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771 + + + L + I KR R G+++ Sbjct: 406 AARTGE---NPGTQKQFVSALAGRTGIYPHKR-------HGVRGYLGIRI 445 >gi|327396932|dbj|BAK14298.1| phage-related protein [Red sea bream iridovirus] Length = 920 Score = 275 bits (704), Expect = 2e-71, Method: Composition-based stats. Identities = 95/606 (15%), Positives = 182/606 (30%), Gaps = 87/606 (14%) Query: 214 LSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGS-TYDEENFNYKWDT- 271 L + W+ V ++ S G + +S + ++ + W+ Sbjct: 296 LVDMLPASVAADRNTWLKVGFCLYQVMDASEDGLRLWMSFSAKCPEKFNATVCHDMWERQ 355 Query: 272 -----FDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLY 326 + + AK+ ST + H + + L M+S + Sbjct: 356 MRPNMYTIATLRYLAKQYSTEAYDAWTHSQWMSAERLKLTHVS-LASIMYSALGTHYVCG 414 Query: 327 TADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFW 386 + WYK D +W+ + S+++ V + + + + + Sbjct: 415 NIKGELWYKFDNG---VWNEKGMNVIRSLISNEAGPIHQVLNKFLASVASGQVPEPDESF 471 Query: 387 FNTDYRRQNVE-ENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVK 445 +R + + S + LD++ + +G+ D +T Sbjct: 472 LKCLHRTTFMLGSSPFKSSVMRECAEQFYRDDFVQRLDTNPYMIAFSNGVYDFKTRTFRP 531 Query: 446 PTKELYITKSTGTPFV-----------------------------------------EGE 464 E ++++ + + Sbjct: 532 GQPEDMLSRTLPVAYTTGGYGRYVDDILSVATLDPLSNTYNVCALLDNIETVGNTMTAKQ 591 Query: 465 PSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524 P + + + F EV +YF R V +GGN + + G G +GK+ + + Sbjct: 592 PLCDVIRFYNTTFPDPEVREYFLRQVSHVFVGGNADKVCLFWTGSGNNGKTVTQTMFEKM 651 Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRLM-GSRIVIISETNENDEINAAKIKQMTG 583 G+ V + R P ANP L RL G R ++ E N ++ IN +K MTG Sbjct: 652 LGSFAVKMSTTVLT--GRKPCVTSANPELARLRNGVRWAVMEEPNNDETINPGPLKSMTG 709 Query: 584 GDCMTARLNY--GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NR 639 D AR + G SE F + N ++ D A W R V+PF+ R Sbjct: 710 NDSFFARDLWCSGKDTSEIIPMFKLHCICNTLPDIKMADMATWNRVRVVPFEAVFVSGER 769 Query: 640 -------------------DASFAQKLETKYTLEAKKWFLKGVKAY-ISKG---LDVDIP 676 D F K+ W L V+ + + +G P Sbjct: 770 LEEARRDVPVEQRDCVQVMDKYFVDKIPLLVEP--MAWLL--VQLWGVLQGEPADAYKTP 825 Query: 677 EVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTR 736 ++ +E + + + + D + + + Y S Sbjct: 826 RKVIQVTKEYEEANNYVRGFADAMMVREPGASVTEMEVYREFKAYMTAYGMATTAGYSIT 885 Query: 737 TVTLNL 742 V +L Sbjct: 886 KVMKDL 891 >gi|107022397|ref|YP_620724.1| hypothetical protein Bcen_0842 [Burkholderia cenocepacia AU 1054] gi|116689345|ref|YP_834968.1| P4 family phage/plasmid primase [Burkholderia cenocepacia HI2424] gi|105892586|gb|ABF75751.1| Phage-plasmid primase P4-like protein [Burkholderia cenocepacia AU 1054] gi|116647434|gb|ABK08075.1| phage/plasmid primase, P4 family [Burkholderia cenocepacia HI2424] Length = 526 Score = 275 bits (703), Expect = 2e-71, Method: Composition-based stats. Identities = 88/555 (15%), Positives = 180/555 (32%), Gaps = 65/555 (11%) Query: 242 GSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKG 301 + +E A +DE + K IP Sbjct: 12 DARPEREAASALEADARMFDELRRAFLAKGNGTNGHAAKPKHPRGKDGRMTAPLDAIPAR 71 Query: 302 LLAS-----RFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIM 356 L S+ +F+ +G L ++ + + W T K Sbjct: 72 LSGEIAATVELSEDAVAVVFASAYQGRLL--------FETLRGKWFRWEDTHWKQDEGAR 123 Query: 357 NFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFS 416 ++ V + + T +E+ ++ E Sbjct: 124 VTREMIRRTVRKMC-----------RGEPRWLTARVVDAIEKLARTDERTCPSEP----- 167 Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY 476 D++ L G++DL G E +T+ TG G + + Sbjct: 168 -----FDANPWLLATPAGVVDLRDGSSRAARPEDMMTRVTGCAPDFGGDCPRWRAFLGAC 222 Query: 477 F-------------ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKY 523 +E++ + R G L G + + + G G +GKST + +++ Sbjct: 223 IHGFDEYGEPRSAPPGDEMVRFLQRMCGYFLTGSTRFEFVFLLFGGGANGKSTFLRVLRE 282 Query: 524 AFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTG 583 G+ +V A + + + + + G+R+ E +N N+ ++K ++ Sbjct: 283 ILGDYFVSVAVETFL----QSAHDQHPTGMAHIEGARLAACGELPDNRSWNSQRVKDISS 338 Query: 584 GDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDA 641 G+ ++AR + + V N VR +A RR+ +IPF + RD+ Sbjct: 339 GEKISARHM-RQDFYDFVPVCKLLFVGNHRPRVRQTGEAEKRRFRIIPFVHKVPENRRDS 397 Query: 642 SFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCC 701 + L + W L G KA I++G +P KA + DT+ W + Sbjct: 398 TLEDAL-REEYPAILAWMLDGAKAVIAEGF-ASMPGAVTKATNDYFAENDTFALWAGERL 455 Query: 702 DIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWK 761 + ++ + +Y+ + + Y+ + +S+R + ++ G Sbjct: 456 LLHKDYSVPAGVAYANYTRWF-EGGGYEGRPVSSREFKMRMEDMGAT--------HDRDN 506 Query: 762 SKRIIKGLKLKPAFE 776 R+ +G KL + + Sbjct: 507 RGRLYRGAKLDTSGD 521 >gi|62421295|gb|AAX82415.1| D5 family NTPase [Orange-spotted grouper iridovirus] Length = 920 Score = 275 bits (702), Expect = 3e-71, Method: Composition-based stats. Identities = 94/606 (15%), Positives = 182/606 (30%), Gaps = 87/606 (14%) Query: 214 LSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGS-TYDEENFNYKWDT- 271 L + W+ V ++ + G + +S + ++ + W+ Sbjct: 296 LVDMLPASVAADRNTWLKVGFCLYQVMDAAEDGLRLWMSFSAKCPEKFNATVCHDMWERQ 355 Query: 272 -----FDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLY 326 + + AK+ ST + H + + L M+S + Sbjct: 356 MRPNMYTIATLRYLAKQYSTEAYDAWTHSQWMSAERLKLTHVS-LASIMYSALGTHYVCG 414 Query: 327 TADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFW 386 + WYK D +W+ + S+++ V + + + + + Sbjct: 415 NIKGELWYKFDNG---VWNEKGMNVIRSLISNEAGPIHQVLNKFLASVASGQVPEPDESF 471 Query: 387 FNTDYRRQNVE-ENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVK 445 +R + + S + LD++ + +G+ D +T Sbjct: 472 LKCLHRTTFMLGSSPFKSSVMRECAEQFYRDDFVQRLDTNPYMIAFSNGVYDFKTRTFRP 531 Query: 446 PTKELYITKSTGTPFV-----------------------------------------EGE 464 E ++++ + + Sbjct: 532 GQPEDMLSRTLPVAYTTGGYGRYVNDILSAATLDPLSNTYNVCALLDNIETVGNTMTAKQ 591 Query: 465 PSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524 P + + + F EV +YF R V +GGN + + G G +GK+ + + Sbjct: 592 PLCDVIRFYNTTFPDPEVREYFLRQVSHVFVGGNADKVCLFWTGSGNNGKTVTQTMFEKM 651 Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRLM-GSRIVIISETNENDEINAAKIKQMTG 583 G+ V + R P ANP L RL G R ++ E N ++ IN +K MTG Sbjct: 652 LGSFAVKMSTTVLT--GRKPCVTSANPELARLRNGVRWAVMEEPNNDETINPGPLKSMTG 709 Query: 584 GDCMTARLNY--GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NR 639 D AR + G SE F + N ++ D A W R V+PF+ R Sbjct: 710 NDSFFARDLWCSGKDTSEIIPMFKLHCICNTLPDIKMADMATWNRVRVVPFEAVFVSGER 769 Query: 640 -------------------DASFAQKLETKYTLEAKKWFLKGVKAY-ISKG---LDVDIP 676 D F K+ W L V+ + + +G P Sbjct: 770 LEEARRDVPVEQRDCVQVMDKYFVDKIPLLVEP--MAWLL--VQLWGVLQGEPADAYKTP 825 Query: 677 EVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTR 736 ++ +E + + + + D + + + Y S Sbjct: 826 RKVIQVTKEYEEANNYVRGFADAMMVREPGASVTEMEVYREFKAYMTAYGMATTAGYSIT 885 Query: 737 TVTLNL 742 V +L Sbjct: 886 KVMKDL 891 >gi|19881514|ref|NP_612331.1| ORF109L [Infectious spleen and kidney necrosis virus] gi|19773719|gb|AAL98833.1|AF371960_109 ORF109L [infectious spleen and kidney necrosis virus] Length = 921 Score = 274 bits (701), Expect = 3e-71, Method: Composition-based stats. Identities = 95/606 (15%), Positives = 183/606 (30%), Gaps = 87/606 (14%) Query: 214 LSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGS-TYDEENFNYKW--- 269 L + W+ V ++ + G + +S + ++ + W Sbjct: 297 LVDMLPASAAADRNTWLKVGFCLYQVMDATEDGLRLWMSFSAKCPEKFNATVCHDMWERQ 356 Query: 270 ---DTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLY 326 +T+ + AK+ ST + H + + L M+S + Sbjct: 357 MRPNTYTVATLRYLAKQYSTEAYDAWTHSQWMSAERLKLTHVS-LASIMYSALSTHYVCG 415 Query: 327 TADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFW 386 + WYK D +W+ + S+++ V + + + + + Sbjct: 416 NIKGELWYKFDNG---VWNEKGMNVIRSLISNEAGPIHQVLNKFLAGVASGQVPEPDETF 472 Query: 387 FNTDYRRQNVE-ENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVK 445 +R + + S + LD++ + +G+ D +T Sbjct: 473 LKCLHRTTFMLGSSPFKSSVMRECAEQFYRDDFVQRLDTNPYMIAFSNGVYDFKTRTFRP 532 Query: 446 PTKELYITKSTGTPFV-----------------------------------------EGE 464 E ++++ + + Sbjct: 533 GQPEDMLSRTLPVAYTVGGYGRYVDDILSAATLDPLSNTYNVCALLDNIETVGNTMTAKQ 592 Query: 465 PSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524 P + + + F EV +YF R V +GGN + + G G +GK+ + + Sbjct: 593 PLCDVIRFYNTTFPDPEVREYFLRQVSHVFVGGNADKVCLFWTGSGNNGKTVTQTMFEKM 652 Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRLM-GSRIVIISETNENDEINAAKIKQMTG 583 G+ V + R P ANP L RL G R ++ E N ++ IN +K MTG Sbjct: 653 LGSFAVKLSTTVLT--GRKPCVTSANPELARLRNGVRWAVMEEPNNDETINPGPLKSMTG 710 Query: 584 GDCMTARLNY--GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NR 639 D AR + G SE F + N ++ D A W R V+PF+ R Sbjct: 711 NDSFFARDLWCSGKETSEIIPMFKLHCICNTLPDIKMADMATWNRVRVVPFEAVFVSGER 770 Query: 640 -------------------DASFAQKLETKYTLEAKKWFLKGVKAY-ISKG---LDVDIP 676 D F K+ W L V+ + + +G P Sbjct: 771 LEEARRDVPVEQRDCVQVMDKYFVDKIPLLVEP--MAWLL--VQLWGVLQGEPADAYKTP 826 Query: 677 EVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTR 736 ++ +E + + + + D + + + Y S Sbjct: 827 RKVIQVTKEYEEANNYVRGFADAMMVHEPGASVTEMEVYREFKAYMTAYGMATTAGYSIT 886 Query: 737 TVTLNL 742 V +L Sbjct: 887 KVMKDL 892 >gi|292659055|gb|ADE34443.1| D5 family NTPase [Turbot reddish body iridovirus] Length = 920 Score = 274 bits (701), Expect = 4e-71, Method: Composition-based stats. Identities = 94/606 (15%), Positives = 182/606 (30%), Gaps = 87/606 (14%) Query: 214 LSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGS-TYDEENFNYKWDT- 271 L + W+ V ++ + G + +S + ++ + W+ Sbjct: 296 LVDMLPASAAADRNTWLKVGFCLYQVMDAAEDGLRLWISFSAKCPEKFNATVCHDMWERQ 355 Query: 272 -----FDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLY 326 + + AK+ ST + H + + L M+S + Sbjct: 356 MRPNMYTVATLRYLAKQYSTEAYDAWTHSQWMSAERLKLTHVS-LASIMYSALSTHYVCG 414 Query: 327 TADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFW 386 + WYK D +W+ + S+++ V + + + + + Sbjct: 415 NIKGELWYKFDNG---VWNEKGMNVIRSLISNEAGPIHQVLNKFLAGVASGQVPEPDESF 471 Query: 387 FNTDYRRQNVE-ENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVK 445 +R + + S + LD++ + +G+ D +T Sbjct: 472 LKCLHRTTFMLGSSPFKSSVMRECAEQFYRDDFVQRLDTNPYMIAFSNGVYDFKTRTFRP 531 Query: 446 PTKELYITKSTGTPFV-----------------------------------------EGE 464 E ++++ + + Sbjct: 532 GQPEDMLSRTLPVAYTTGGYGSYVDDILSAATLDPLSNTYNVCALLDNIEIVGNTMTAKQ 591 Query: 465 PSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524 P + + + F EV +YF R V +GGN + + G G +GK+ + + Sbjct: 592 PLCDVIRFYNTTFPDAEVREYFLRQVSHVFVGGNADKVCLFWTGSGNNGKTVTQTMFEKM 651 Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRLM-GSRIVIISETNENDEINAAKIKQMTG 583 G+ V + R P ANP L RL G R ++ E N ++ IN +K MTG Sbjct: 652 LGSFAVKMSTTVLT--GRKPCVTSANPELARLRNGVRWAVMEEPNNDETINPGPLKSMTG 709 Query: 584 GDCMTARLNY--GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NR 639 D AR + G SE F + N ++ D A W R V+PF+ R Sbjct: 710 NDSFFARDLWCSGKDTSEIVPMFKLHCICNTLPDIKMADMATWNRVRVVPFEAVFVSGER 769 Query: 640 -------------------DASFAQKLETKYTLEAKKWFLKGVKAY-ISKG---LDVDIP 676 D F K+ W L V+ + + +G P Sbjct: 770 LEEARRDVPVEQRDCVQVMDKYFVDKIPLLVEP--MAWLL--VQLWGVLQGEPADAYKTP 825 Query: 677 EVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTR 736 ++ +E + + + + D + + + Y S Sbjct: 826 RKVIQVTKEYEEANNYVRGFADAMMVREPGASVTEMEVYREFKAYMTAYGMATTAGYSIT 885 Query: 737 TVTLNL 742 V +L Sbjct: 886 KVMKDL 891 >gi|29567083|ref|NP_818646.1| gp108 [Mycobacterium phage Barnyard] gi|29425808|gb|AAN02162.1| gp108 [Mycobacterium phage Barnyard] Length = 916 Score = 274 bits (700), Expect = 4e-71, Method: Composition-based stats. Identities = 120/894 (13%), Positives = 257/894 (28%), Gaps = 141/894 (15%) Query: 6 WKEQAKQAIHNGF-KLIPLRLGDKRPQRLG--KWEEQLLSSEKIDKLPA------CGFGF 56 +++ + +PL K P G S + I Sbjct: 13 FRDSFNAYRKAKWFGTLPLPARKKNPPPTGFTGHAAPFPSPDDIRGWLGEPERKRANIAL 72 Query: 57 VCG--VGEQPLYAFDIDS-----KDEKTANTFKDTFEILHGTPIVRIGQKP----KILIP 105 G E + D+D K+++ + P I + Sbjct: 73 RLGGVDKEYEVIGIDVDHYVKGDKEKRGGEQLQALENAHGPLPPTWISSARTDGVSGIRY 132 Query: 106 FRMNKEGIKKKKTTESTQGHLDILGCG-QYFVAYNIH-PKTKKEYTW--------TTPPH 155 +R+ + ++ + G ++ V + + P +K +Y W Sbjct: 133 YRVP----RGLAFRGQVSKDIECIQKGHRFAVVWPSYNPDSKSDYWWFPPDADLTPEGRK 188 Query: 156 RFKVEDTPLLSEEDV--EYLFKFFQEITVPLVKDKKSIIPSKTWTNN-NNRQYTNREITA 212 ++V + P+ +E + E KF + K + + + ++ E Sbjct: 189 AWRVGELPVATELPLLPETWLKFLTRGLMEAGKVEIDMDSTVDDIYAWAYEKFGVDEAVC 248 Query: 213 FLSCFGEE----FYNGSHDEWIPVVMAVHHETRGSSKGKEIAR--------RWSKQGSTY 260 F + +V A + +S+G + + + Sbjct: 249 FRMREKADKHIKLIREEATSHDKIVNAHMNIMLLASEGHKGWDTAIHEIEAAFVDEVQKR 308 Query: 261 DEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDA---------- 310 D+ + + I K ++ + + +P L +D Sbjct: 309 DKRSIDELRGEVFRSRINGLRKVKAKVDARIAIGAEGVPATDLECGSTDDQGVPLLGSEA 368 Query: 311 -------YNKAMFSIYKKGHFL------YTADTKAW---------YKKDKNNVYIWSLT- 347 ++ + W IW Sbjct: 369 SPPDNNLFDIPRKQSSPASEYRQNDDGNADHFIDIWSDANMGPAVRYVKGLGWIIWHKGD 428 Query: 348 ------LDKITASIMNFLVSMKEDVFDLSEEPEDN---------------------NKNS 380 ++ + M V D E +N Sbjct: 429 HDQRQPHWEVDEDGRGTMRQMFRAVRDKQEGFAENLKVDYTNAMRAFAQQTPGVSAADVR 488 Query: 381 KSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLET 440 ++ W N + N A + ++ + ++ + +D+ L +G+++L Sbjct: 489 EAKSAWSNWHKFATSSGMNRNADNAIAAIATHAGINLDINEIDARPDLLAVANGVVELNP 548 Query: 441 --GQKVKPTKELYITKSTGTPFVEGEPSQ-----EFLDLVSGYFESEEVMDYFTRCVGMA 493 + E Y+T +TG P++ + + + + + +G A Sbjct: 549 TGARLRDAEPEDYLTLNTGVPWLHPKEIPNTGQKLWQEYLDKFLPDPSYRRDVQIILGHA 608 Query: 494 LLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL 553 L+G N ++ I +G +GKS ++ +I G+ + NP L Sbjct: 609 LIGSNPHKKLIIFKGAANTGKSVMITMINEVLGDYAKTTNRSLFTYHK-------LNPVL 661 Query: 554 IRLMGSRIVIISETNENDE--INAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPN 611 + + R+V I E + + + ++K TG D + A L N F P +V N Sbjct: 662 AQALPKRVVSIVELSRDKRNPLTVDQMKTATGNDYIEAELKGKNATINRVPMFLPIMVTN 721 Query: 612 KHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGL 671 + D A R VI F+ N D + A ++ + W ++G Y Sbjct: 722 TVPEIEGHDKALRERLRVISFNVVEQNPDDTIAARMRRESRTAVLNWLIEGYNLYCQSER 781 Query: 672 DVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYRE-------- 723 + +E D + +C N+ + S + A+ E+ Sbjct: 782 KFPENDRMRADTDEFASDMDDISLFAKECLKPAPNMDKPSINWARDQVEWCTSRAAVWTR 841 Query: 724 ------QELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771 ++ ++++ T LK+ GF + ++ K+ G+KL Sbjct: 842 YEQWLFDNHIPEKHKLTSPQFTRRLKELGFNSPQNKVRVNKQ--LGYYWLGVKL 893 >gi|119383107|ref|YP_914163.1| P4 family phage/plasmid primase [Paracoccus denitrificans PD1222] gi|119372874|gb|ABL68467.1| phage/plasmid primase, P4 family [Paracoccus denitrificans PD1222] Length = 613 Score = 272 bits (695), Expect = 2e-70, Method: Composition-based stats. Identities = 88/538 (16%), Positives = 176/538 (32%), Gaps = 75/538 (13%) Query: 304 ASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMK 363 +D N F I+ L+ + W+ D + ++ I + Sbjct: 64 REPLNDLGNARRFVIHFGDDILFVSQV-GWFVWDGSRWRKDDEISRDVSPLIRAQAHKVS 122 Query: 364 EDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVE-------ENSKAKSTA---------- 406 + + + N+++ K + RR+ +E + S K A Sbjct: 123 TLILQEIDWLQPNDRDRKLIEEDRDLKVRRREIENAPGYAADESLMKELASIEARLRALD 182 Query: 407 ----------------------------QSLEAGSIFSITSDLLDSSSRFLGEQDGILDL 438 EA + + D +D + + G+L Sbjct: 183 AALKSYRNLTTRRLTWAKDAGNSTRIAHMIAEARVMLARAVDDMDQGALDVNTLSGVLRF 242 Query: 439 ETGQ--------------KVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMD 484 + + +TK + F + + E+ Sbjct: 243 TRIPNDPEAGMTGMSSVELIPHDRAQLLTKIMPVIYDPDAKCPRFDSFLEQIQPNIEMRR 302 Query: 485 YFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544 + R G+++ G + G G +GKS L++L+ FG+ +A + Sbjct: 303 FLQRWFGLSMTGLAVQ-KLAFFHGGGANGKSVLVDLMARMFGDYS-ASARIESLTGKNKK 360 Query: 545 EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604 + P L+ L+ +R V SE + + + +K +TGG+ M R Y + + F Sbjct: 361 SGSDSQPDLMPLIAARFVRTSEPEDGERLQEGLVKALTGGEPMMIRALYSD-FIIFRPIF 419 Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLET---KYTLEAKKWFLK 661 I N +R DD WRR +++ F I + ++L+ + W ++ Sbjct: 420 KLTISGNHLPEIRGGDDGIWRRVMLVNFPVQIPEKKRIPKEELDEILWQERSGILNWLIQ 479 Query: 662 GVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIG--ENLWEESHSLAKSYS 719 G+ ++ GL P+ A E R +D ++ D + E + + L ++++ Sbjct: 480 GLIDFLDGGLQ--EPDDVTSATEGYRAESDPIGTFLGDATVVTGFEGDFMTARELIEAFN 537 Query: 720 EYREQELNYDRKRISTRTVTLNLKQKGFIGGI--KREKIEKEWKSKRIIKGLKLKPAF 775 + E+ R RTV+ LK K + +G++L F Sbjct: 538 FWIEERGET---RWGNRTVSNKLKAKSGTWRHPETNKTFAPGKSGVTGYRGIRLDDTF 592 >gi|319648623|ref|ZP_08002835.1| hypothetical protein HMPREF1012_03874 [Bacillus sp. BT1B_CT2] gi|317389271|gb|EFV70086.1| hypothetical protein HMPREF1012_03874 [Bacillus sp. BT1B_CT2] Length = 629 Score = 271 bits (692), Expect = 4e-70, Method: Composition-based stats. Identities = 99/634 (15%), Positives = 208/634 (32%), Gaps = 73/634 (11%) Query: 5 QWKEQAKQAIHNGFKLIP--LRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGE 62 QW + +P + + W + + G GF+ + Sbjct: 31 QWILWRSEERDGKKTKVPYQIDGSMAQSSNKRTWSTFPTVLKFYNDRDYDGIGFMF-SKD 89 Query: 63 QPLYAFDIDS--KDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120 P DID +D + + + + K + I + + Sbjct: 90 DPFIGIDIDHCVEDGVLSPFAEKIVQAIGSYTEYSPSGKG-VHIITKGKIPLRGPGTGRK 148 Query: 121 STQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEI 180 + + L++ G+YF + + ++E E K+ ++ Sbjct: 149 NPELGLEVYRHGRYFTFTG---------------NSLGIGPVEERTDELKELFEKYLKDK 193 Query: 181 TVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSH--DEWIPVVMAVHH 238 S+ +N +N++ R + ++ +NG D+ MA+ + Sbjct: 194 KEEQQPSSPPAAASRDMSNLSNKEIWERMFNSKNGKSIQDLFNGHLINDDHSATDMALCN 253 Query: 239 ---------------ETRGSSKGKEIARRW-SKQGSTYDEENFNYKWDTFDFEEIGDTAK 282 R S +E R S G+TY E + + Sbjct: 254 HLAFWTDKDPAKMDSMFRESGLYREKWDRQHSSDGATYGEMTIAAAVYSTHTTISDLMEE 313 Query: 283 KRSTFTSLFYHH--------GKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWY 334 ++ ++ H + I ++ N Y + Y Sbjct: 314 QQEQPYEVYISHPENSKVEDTEEIIDTPPVFHLTELGNAERIVYYHGKNIRYC------- 366 Query: 335 KKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQ 394 ++ + IW+ + S + + L E + + + D+ ++ Sbjct: 367 --NELDWLIWNGKRWEE-DSKRKIEAITAKTLRALYGEAKATEDKFRKKQL---NDWAKK 420 Query: 395 NVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITK 454 N + + L+ + S+ LDS +G++DL+TG+ + ++L TK Sbjct: 421 CERRNIRMNTI---LDVRPMVSVRKQELDSHKYLFNCDNGVIDLKTGELLPHDRDLLFTK 477 Query: 455 STGTPFVEGEPSQEFLDLVSGYFESE------EVMDYFTRCVGMALLGGNKAQRFIHIRG 508 + + + + F + E++D+ + +G +L G Q + G Sbjct: 478 ISPIAYQTDADCPNWKTFLESIFIDDQGTPNYEIIDFMQKAIGYSLTGDTTEQVMFFLFG 537 Query: 509 VGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN 568 G +GKST +N +++ FG+ + I + N + RL G+R V E+ Sbjct: 538 NGRNGKSTFINTVQHLFGDYGRQTNSDTFIKKK---NDSAINNDIARLDGARFVSAVESE 594 Query: 569 ENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602 E +++ + +KQ+TGG+ M+AR Y E Sbjct: 595 EGQQLSESLVKQITGGEKMSARFL-RQEYFEFTP 627 >gi|167630917|ref|YP_001681416.1| primase, putative [Heliobacterium modesticaldum Ice1] gi|167593657|gb|ABZ85405.1| primase, putative [Heliobacterium modesticaldum Ice1] Length = 833 Score = 270 bits (691), Expect = 4e-70, Method: Composition-based stats. Identities = 78/480 (16%), Positives = 162/480 (33%), Gaps = 30/480 (6%) Query: 304 ASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIW-----SLTLDKITASIMNF 358 + K++ ++ K Y + + + W L I + + Sbjct: 371 HFELNSPAVKSLCALQKDLFKEYRESKETKRETMGEELPDWYEPSERGGLRFIPGLLASH 430 Query: 359 LVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSIT 418 + + N K+ R ++ E S E I Sbjct: 431 MSKNVSAFYGAESYYIYENGVYKAASDLQAAARVRGHLIERYATMSAINDTEGQWRMLIY 490 Query: 419 S--DLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY 476 ++ + + ++G+ ++ G T E Y T + E +F+ + Sbjct: 491 KPIREINCNPFIINLKNGLYNVLDGSFKAHTPEYYSTVQLKASYNENAECPKFMAFLQSI 550 Query: 477 FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKY-AFGNQYVINAEA 535 E + G L+ NKAQ+ + G +GKSTL+++ + G++ V N Sbjct: 551 LGDTE-IHLMQEIFGYLLIPVNKAQKSFVLVGAPNAGKSTLLSVAQEILLGSENVSNIPW 609 Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595 + L G I ++ + K +TG D +TA N Sbjct: 610 QSLSD---------RFKTAELFGKLANIFADLPSKSVDDNGIFKALTGEDYITAERKNKN 660 Query: 596 TYSESPASFTPFIVPNKHLF-VRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYT 652 +S N+ + + ++RR I+I F+ P+ RD + +KL Sbjct: 661 PFS-FKPYARLLFSCNEIPRNYGDRSEGFYRRLIIIRFENPVPPEKRDPNLIEKL-ASER 718 Query: 653 LEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESH 712 W L+G+K I+ G E + + +++ +++++CC + + Sbjct: 719 DGIFMWALEGLKRLIANGYAFSETEGTKAELQRYKVESNSALSFVEECCVLEDEAECVRE 778 Query: 713 SLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLK 772 L ++Y +Y + K +S +++ G EK+ + +G++L Sbjct: 779 ELFQAYRDYCLKNG---FKPMSQANFNKDIESLGERVERGLEKVSRRK----TWRGIRLN 831 >gi|82800076|gb|ABB92287.1| putative D5 family NTPase/ATPase [Tiger frog virus] Length = 975 Score = 270 bits (690), Expect = 6e-70, Method: Composition-based stats. Identities = 111/692 (16%), Positives = 212/692 (30%), Gaps = 132/692 (19%) Query: 174 FKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVV 233 + + L ++ T T +R E+TA L+ + W+ V Sbjct: 272 LADYSAVMAKLDVARQRKPAWNTDTTKAHRLKRVTELTAMLTADLAD----DRQTWLNVG 327 Query: 234 MAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKW------DTFDFEEIGDTAKKRSTF 287 + +T GS++G ++ +SK+ DE+ W ++F + A+K + Sbjct: 328 FCLWQQTSGSAEGYKVWLSFSKKSDKCDEDECWTIWNNQMRPNSFTEGTLVYLAQKHNPG 387 Query: 288 TSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYI---W 344 L + K P + + A K M+ Y T+ WY+ D Sbjct: 388 AYLNWLQVKSTPVNDIGTNV--AMAKIMWDYYGHQFVCCGGKTQTWYRFDGLTWVESNQG 445 Query: 345 SLTLDKITASIMNFLVSMKEDVFDLS---------------EEPEDNNKNSKSPRFWFNT 389 + I+A + + ++ ++ ED+ + W + Sbjct: 446 TDLRSLISAEGGPLRRLLMRQLDAVTAAKARGGRDSGNEDEDDKEDSATDEDDSNPWDSE 505 Query: 390 DYR----------------RQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQD 433 R + +E + + D++DS + Sbjct: 506 LRRLDSEVLDAMVKRLRNNLKGIEMTGVKNNVLRECAELFYQPEFGDVIDSDPLLFAFAN 565 Query: 434 GILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFL----------------------D 471 GI D G E +++ FV P + Sbjct: 566 GIYDFREGCLRDGRPEDKLSRRAPVDFVMFGPIPKARHPDNSPVMRPKRMPGESVQDHAR 625 Query: 472 LVSGYFESEEV-------------------------MDYFTRCVGMAL------------ 494 ++ FE +++ ++ Sbjct: 626 RLAECFEQDDISTSAGTMGKEDVDSFSCNPKDFKGPVNKLLAFFASVFPDEGTRRFFLRN 685 Query: 495 -----LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549 +GGN + + G G +GK+ L + G V + + R P AG A Sbjct: 686 AAATFVGGNPDKVVLFWTGTGNNGKTVTQTLFEKMLGCFAVKMSTQTLT--GRKPSAGSA 743 Query: 550 NPSLIRL-MGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY--GNTYSESPASFTP 606 NP + RL G R ++ E N ++ INA +K MTG D AR Y G T E F Sbjct: 744 NPEMARLGGGVRWAVMEEPNSDETINAGTLKSMTGNDSFFARDLYCAGKTTFEIKPMFKL 803 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--------------DASFAQKLETKYT 652 ++ N +++ D A W R V+PF+ D +KL+ Sbjct: 804 HVICNALPGIKDADQATWNRVRVVPFESTFVTPGTTAPADAKYVFPADTDITRKLDRLTA 863 Query: 653 LEAKKWFLKGVKA-YISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEES 711 W+L A ++ + P ++A ++ D ++ + ++ + Sbjct: 864 P--LAWYLVYCWACIQNERVKYVPPPKVMEATMAYQKEHDLFRQFAEEMLRKDPDSTLTC 921 Query: 712 HSLAKSYSEYREQELNYDRKRISTRTVTLNLK 743 ++ ++ + R V L+ Sbjct: 922 DDAYTAFRDWTSANSPHGTVRRPKGQVIKCLE 953 >gi|161598668|ref|YP_001569030.1| hypothetical protein pSSVx_p9 [Sulfolobus islandicus] Length = 892 Score = 270 bits (689), Expect = 8e-70, Method: Composition-based stats. Identities = 106/855 (12%), Positives = 251/855 (29%), Gaps = 131/855 (15%) Query: 8 EQAKQAIHNGFKLIPLRLGDKRP--QRLGKWEEQLLSSEKIDKL------PACGFGFVCG 59 + A+ ++NGF + P+ K+P K+ + L+ E+ + + G Sbjct: 6 QYAQWFVNNGFAIFPIDKETKKPVISEWQKYSREKLTEEEKAEFLKMIGEQNYNYAIPGG 65 Query: 60 VGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPF---------RMNK 110 + L D + + + L + + L F + N Sbjct: 66 Q--KGLVVLDFEDLQLLKQWISEPALDDLCKQTLC-VQTPHGGLHIFVISYEIPEHKFNP 122 Query: 111 EGIKKKKTTESTQGHLD-ILGCGQYFVAYNIH----PKTKKEYTWTTPPHRFKVEDTPLL 165 K Q + +LG G P+ +++T + ++ Sbjct: 123 AFTLNGKGIVDLQSYNSYVLGVGSCINHKYCESPKCPRRGQDHTTCYTLYNNELVPIVE- 181 Query: 166 SEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGS 225 + ++ K+ EI + +K W E + Sbjct: 182 TVRGLKEFLKWLDEIAKQKKLGIELSPSAKEWVYGKTEAVEEEEFKKLKEDMAKYNKFKG 241 Query: 226 HDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRS 285 + + + KE +++W +T + K ++ I + Sbjct: 242 KTVEAVREEVCKEMKKSNEELKEKSQKWKAIYNTAIPVICDSK--SYTQLGIDRSRGDWR 299 Query: 286 TFTSLFYHHGKLI---------PKGLLASRFSDAYNKAMFSIYK---------------- 320 F +LF H + + + +++ + +K Sbjct: 300 VFRALFTHGVADLDVVDKLLPADSKVYSPKWNRYMIHTIAKAWKYSKPALKFQKEAQGKN 359 Query: 321 ------------KGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIM-NFLVSMKEDVF 367 L KA+Y+ +N I + I F +++ + Sbjct: 360 EKEAKKIARKIITEAVLERYKIKAFYQVTGHNQAIVGTFVWDKKKGIYVPFDKGLRKVIR 419 Query: 368 DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSR 427 L+E + +++ R +R + + K + + Sbjct: 420 KLAESLQIKSRDKTLAR-----LSKRDVDDIVDEIKDLKLTPIPAEPLRV---------- 464 Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP--------------------SQ 467 ++ ++ + K P+ Sbjct: 465 --AFKNVTIEWAIKANILHRKTPKQYSFYYLPWTVNYEEFNKMKSLSIQEIEELAKRLCP 522 Query: 468 EFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 + L+ + + + + +G L G K ++ + G G +GKS+ +NL+K G+ Sbjct: 523 KSLETFKSWVGVKWI--LLFQIIGYTLYPGIKFRKAFMLVGEGKNGKSSFINLVKKVLGD 580 Query: 528 QYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCM 587 V + + + L ++E+ + + ++K++TG D + Sbjct: 581 YAVSISPRELFD-------PRNRFIVGNLYHKLANAVAESKDYSIDDMDRVKRLTGDDWI 633 Query: 588 TARLNYGNTYSESPASFTPFIVPNKHLFVRN-PDDAWWRRYIVIPFDKPIANRDASFAQK 646 TA + + + + I N VR+ D A+W R++++ F + D+ F + Sbjct: 634 TADVKFKDP-ITFKSVAKLIIASNNMPHVRDTNDRAFWHRWVIVEFPHQFKDNDSWFDKT 692 Query: 647 LETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE- 705 + + + ++G VD + + D+ +I + G Sbjct: 693 FTEEEINGIITTAIASISRAFAQG-HVDFEQSEEEVMGIWLSHIDSVYNFIKTYVEKGTI 751 Query: 706 -------NLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEK 758 +LW L Y Y ++ + + ++ + L++ +K Sbjct: 752 RLDPKNGDLWVPKDQLYNLYQNYCIEQG---FRGVGRKSFSRKLRE-----YFGITVSQK 803 Query: 759 EWKSKRIIKGLKLKP 773 + R G+ + P Sbjct: 804 GAERDRAFVGIAVDP 818 >gi|84684071|ref|ZP_01011973.1| hypothetical protein 1099457000262_RB2654_16521 [Maritimibacter alkaliphilus HTCC2654] gi|84667824|gb|EAQ14292.1| hypothetical protein RB2654_16521 [Rhodobacterales bacterium HTCC2654] Length = 602 Score = 270 bits (689), Expect = 8e-70, Method: Composition-based stats. Identities = 88/546 (16%), Positives = 179/546 (32%), Gaps = 87/546 (15%) Query: 305 SRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKE 364 +D N F I+ ++ + + W+ + + + ++ Sbjct: 45 QSENDYGNGQRFIIHFGDDLMFVP---------RVGWFTWTGAVWQADPDELEVRRRAQQ 95 Query: 365 ---------------------------------DVFDLSEEPEDNNKNSKSPRFWFNTDY 391 ++ + + +++ ++ D Sbjct: 96 IGPLILEELDYLRLPQVQMDLIAEEDVLVLRRVEIEAIPAKDRSSDQATELTELRLKLDR 155 Query: 392 RRQNVEENSKAKSTA---------------QSLEAGSIFSITSDLLDSSSRFLGEQDGIL 436 + ++ S+ ++ E+ + ++ + LD++ + G++ Sbjct: 156 ISEAKKKLSERRAARRRKAVQAGNSGPIDHMVAESQTSLAVPLEQLDAAPFDVNCLSGVV 215 Query: 437 D---------------LETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEE 481 V +E +TK + + F ++ + Sbjct: 216 QSRVTEEPTDDGRKIRYAQVDLVPHAREQRLTKIMPVEYDPDATAPGFEKFLTRVLPDPD 275 Query: 482 VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQN 541 + + R G+A+ + + G G +GKS L+++I G+ S N Sbjct: 276 IRAFLQRWFGVAMTAEPLQN-MVFLFGSGANGKSVLVDIISRVLGDYGATARIESLTGTN 334 Query: 542 RPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESP 601 R G A P LI L+GSR V SE +E + IK+ TGG+ + R + + + Sbjct: 335 R-RGGGDATPDLIPLIGSRHVRTSEPDEGMRLQEGLIKEWTGGEPILVRALHSD-FIVVL 392 Query: 602 ASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWF 659 F + N +R DD WRR++++PF + I RD KL + +W Sbjct: 393 PKFKLTMSGNHKPDIRGTDDGIWRRFLMVPFTEQIPVAERDPHLVDKLW-EERDGIFQWL 451 Query: 660 LKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIG--ENLWEESHSLAKS 717 + G+ + GL P+ + A E R D ++ C + S L ++ Sbjct: 452 IVGLNQFQEIGLSP--PDAVVAATAEFRAEQDPVGDFLATCTVVTGRPEDTVTSSRLVEA 509 Query: 718 YSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKR--EKIEKEWKSKRIIKGLKLKPAF 775 ++ + + K TV+ L K + K S G++L F Sbjct: 510 FTFWLMKNGQGAWKP---TTVSRRLSDKAERWRHPNGGQSFTKRKASTVFYDGIRLTEVF 566 Query: 776 ESVDDN 781 DN Sbjct: 567 ARDLDN 572 >gi|228861234|ref|YP_002854256.1| putative D5 family NTPase/ATPase [Soft-shelled turtle iridovirus] gi|194307514|gb|ACF42244.1| putative D5 family NTPase/ATPase [Soft-shelled turtle iridovirus] Length = 975 Score = 270 bits (689), Expect = 8e-70, Method: Composition-based stats. Identities = 109/692 (15%), Positives = 205/692 (29%), Gaps = 132/692 (19%) Query: 174 FKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVV 233 + + L ++ T +R ++TA L+ + W+ V Sbjct: 272 LADYSAVMAKLDVARQRKPAWNTDATKAHRLKRVTDLTAMLTADLAD----DRQTWLNVG 327 Query: 234 MAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKW------DTFDFEEIGDTAKKRSTF 287 + +T GS++G ++ +SK+ DE+ W ++F + A+K + Sbjct: 328 FCLWQQTSGSAEGYKVWLSFSKKSDKCDEDECWTIWNNQMRPNSFTEGTLVYLAQKHNPG 387 Query: 288 TSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYI---W 344 L + K P + + A K M+ Y T+ WY+ D Sbjct: 388 AYLNWLQVKSTPVNDIGTNV--AMAKIMWDYYGHQFVCCGGKTQTWYRFDGLTWVESNQG 445 Query: 345 SLTLDKITASIMNFLVSMKEDVFDLSE---------------------------EPEDNN 377 + I+A + + ++ P D+ Sbjct: 446 TDLRSLISAEGGPLRRLLMRQLDAVTAAKARGGRDSGNEDEDDEEESATDEDDSNPWDSE 505 Query: 378 KNSKSPRFWFNTDYRRQNVEENSKA----KSTAQSLEAGSIFSITSDLLDSSSRFLGEQD 433 R +N + + + + D++DS + Sbjct: 506 LRRLDSEVLDAMVKRLRNNLKGIEMTGVKNNVLRECAELFYQPEFGDVIDSDPLLFAFAN 565 Query: 434 GILDLETGQKVKPTKELYITKSTGTPFVEG------------------------------ 463 GI D G E +++ FV Sbjct: 566 GIYDFREGCLRDGRPEDKLSRRAPVDFVMFGPIPKARHPDNSPVMRPKRMPGESVQDHAR 625 Query: 464 --EPSQEFLDLVSG--YFESEEVMDY-------------FTRCVGMAL------------ 494 E D+++ E+V + Sbjct: 626 RLAECFEQDDVLASAGTMGKEDVESFSCNPKDFKGPVTKLLAFFASVFPDEGTRRFFLRN 685 Query: 495 -----LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549 +GGN + + G G +GK+ L + G V + + R P AG A Sbjct: 686 AAATFVGGNPDKVVLFWTGTGNNGKTVTQTLFEKMLGCFAVKMSTQTLT--GRKPSAGSA 743 Query: 550 NPSLIRL-MGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY--GNTYSESPASFTP 606 NP + RL G R ++ E N ++ INA +K MTG D AR Y G T E F Sbjct: 744 NPEMARLGGGVRWAVMEEPNSDETINAGTLKSMTGNDSFFARDLYCAGKTTFEIKPMFKL 803 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--------------DASFAQKLETKYT 652 ++ N +++ D A W R V+PF+ D +KL+ Sbjct: 804 HVICNALPGIKDADQATWNRVRVVPFESTFVTPGTTAPADAKYVFPADTDITRKLDRLTA 863 Query: 653 LEAKKWFLKGVKA-YISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEES 711 W+L A ++ + P ++A ++ D ++ + ++ + Sbjct: 864 P--LAWYLVYCWACIQNERVKYVPPPKVMEATMAYQKEHDLFRQFAEEMLRKDPDSTLTC 921 Query: 712 HSLAKSYSEYREQELNYDRKRISTRTVTLNLK 743 ++ ++ + R V L+ Sbjct: 922 DDAYTAFRDWTSANSPHGTVRRPKGQVVKCLE 953 >gi|219855955|ref|YP_002473077.1| hypothetical protein CKR_2612 [Clostridium kluyveri NBRC 12016] gi|219569679|dbj|BAH07663.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 787 Score = 269 bits (687), Expect = 1e-69, Method: Composition-based stats. Identities = 132/770 (17%), Positives = 256/770 (33%), Gaps = 62/770 (8%) Query: 6 WKEQAKQAIHNGFKLIPLRLGDK--RPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQ 63 W ++ IP ++ K W E + + G + Sbjct: 40 WVLWKLESRKGKTTKIPYQIDGKMASSTNPDTWNTFSKVVETYNHMGKYS-GIGFMFQDS 98 Query: 64 PLYAFDID--SKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTES 121 + DID KD + + + L + K ++ + +K+ Sbjct: 99 GIVGIDIDDCVKDGEISEKAAYIIDTLDSYTELSQSGKGVHVLAYGYIPRAVKR------ 152 Query: 122 TQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEIT 181 +++ G+YF K+E+ ++ ++ ++ +Q+ Sbjct: 153 ---EIEMYNTGRYFALTG------------DSLAGNKIEN----RQKQLDAIYNIYQKDD 193 Query: 182 VPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETR 241 L + N + ++ + + Y+GS +++ Sbjct: 194 EALKEQLPVKTLQSKNIKFNINELLDKAFASKNGFKIKALYDGSWQN-------LYNSQS 246 Query: 242 GSSKGKEIARRWSKQGSTYDEEN-------FNYKWDT---FDFEEIGDTAKKRSTFTSLF 291 + + + Y + KWD R T+ Sbjct: 247 EADQALANYLAFWLNKDPYLMDEAFRRSGLCREKWDRDDYMTRTINKAIRDCRETYQEYM 306 Query: 292 YHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKI 351 K + F+D F K Y D K +Y W Sbjct: 307 IRTQKETNDFIKNYDFTDLGISKDFKNKYKDILKYAVDIKYYYY--------WDGKKWVR 358 Query: 352 TASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEA 411 + + V ++ + + + R ++ + +A Sbjct: 359 DDDGLPIKTLSIKFVENMVVKINQYISKLDDEKEIADMRKVRNKLKSARTLDVIYKQYKA 418 Query: 412 GSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLD 471 I S ++DS R++ +GI+D+ TG+ + K+L+I+K +V G+ + F Sbjct: 419 FEDTHINSKIMDSDVRYINCNNGIVDITTGKILPHDKDLHISKIAEVNYVPGKINSLFKA 478 Query: 472 LVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530 + F E ++ F +G L G + F I GV +GK+ + LI FG+ YV Sbjct: 479 SIDRLFNGDNEEIEAFEILLGYMLSGRANQKIFPIIHGVRNTGKTQIFELILNTFGSDYV 538 Query: 531 INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR 590 + + S +M+ +G ANP L L G R++I SET+++D ++ +K++ GGD + AR Sbjct: 539 KSIDKSLLMKAWNKNSG-ANPELAELQGVRLLICSETSDSDYLDTDFMKKIVGGDTIKAR 597 Query: 591 LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQK-LET 649 Y E +F P I NK DDA R IVI + D K Sbjct: 598 PLYK-PPIEFTPNFVPVIFTNKKPSFDGNDDALVIRIIVIELLYSLEKNDIDPDFKRKVL 656 Query: 650 KYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWE 709 + + + + + G + P+ +KEE + + Y + D Sbjct: 657 EDKEGLFSYIISCIVKFTKTG-KLKFPQRWADSKEEYAKENNPYGRFKDIYFSDLPGHNL 715 Query: 710 ESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKE 759 + + + E+ E Y + S + +T K G G+ + + + Sbjct: 716 PAKEVYPIFEEWYLNE--YSKNVPSRKKITQGFKALGIKTGMTKGYVTYK 763 >gi|153955563|ref|YP_001396328.1| hypothetical protein CKL_2948 [Clostridium kluyveri DSM 555] gi|146348421|gb|EDK34957.1| Phage-related protein [Clostridium kluyveri DSM 555] Length = 768 Score = 269 bits (686), Expect = 2e-69, Method: Composition-based stats. Identities = 132/770 (17%), Positives = 256/770 (33%), Gaps = 62/770 (8%) Query: 6 WKEQAKQAIHNGFKLIPLRLGDK--RPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQ 63 W ++ IP ++ K W E + + G + Sbjct: 21 WVLWKLESRKGKTTKIPYQIDGKMASSTNPDTWNTFSKVVETYNHMGKYS-GIGFMFQDS 79 Query: 64 PLYAFDID--SKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTES 121 + DID KD + + + L + K ++ + +K+ Sbjct: 80 GIVGIDIDDCVKDGEISEKAAYIIDTLDSYTELSQSGKGVHVLAYGYIPRAVKR------ 133 Query: 122 TQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEIT 181 +++ G+YF K+E+ ++ ++ ++ +Q+ Sbjct: 134 ---EIEMYNTGRYFALTG------------DSLAGNKIEN----RQKQLDAIYNIYQKDD 174 Query: 182 VPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETR 241 L + N + ++ + + Y+GS +++ Sbjct: 175 EALKEQLPVKTLQSKNIKFNINELLDKAFASKNGFKIKALYDGSWQN-------LYNSQS 227 Query: 242 GSSKGKEIARRWSKQGSTYDEEN-------FNYKWDT---FDFEEIGDTAKKRSTFTSLF 291 + + + Y + KWD R T+ Sbjct: 228 EADQALANYLAFWLNKDPYLMDEAFRRSGLCREKWDRDDYMTRTINKAIRDCRETYQEYM 287 Query: 292 YHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKI 351 K + F+D F K Y D K +Y W Sbjct: 288 IRTQKETNDFIKNYDFTDLGISKDFKNKYKDILKYAVDIKYYYY--------WDGKKWVR 339 Query: 352 TASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEA 411 + + V ++ + + + R ++ + +A Sbjct: 340 DDDGLPIKTLSIKFVENMVVKINQYISKLDDEKEIADMRKVRNKLKSARTLDVIYKQYKA 399 Query: 412 GSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLD 471 I S ++DS R++ +GI+D+ TG+ + K+L+I+K +V G+ + F Sbjct: 400 FEDTHINSKIMDSDVRYINCNNGIVDITTGKILPHDKDLHISKIAEVNYVPGKINSLFKA 459 Query: 472 LVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530 + F E ++ F +G L G + F I GV +GK+ + LI FG+ YV Sbjct: 460 SIDRLFNGDNEEIEAFEILLGYMLSGRANQKIFPIIHGVRNTGKTQIFELILNTFGSDYV 519 Query: 531 INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR 590 + + S +M+ +G ANP L L G R++I SET+++D ++ +K++ GGD + AR Sbjct: 520 KSIDKSLLMKAWNKNSG-ANPELAELQGVRLLICSETSDSDYLDTDFMKKIVGGDTIKAR 578 Query: 591 LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQK-LET 649 Y E +F P I NK DDA R IVI + D K Sbjct: 579 PLYK-PPIEFTPNFVPVIFTNKKPSFDGNDDALVIRIIVIELLYSLEKNDIDPDFKRKVL 637 Query: 650 KYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWE 709 + + + + + G + P+ +KEE + + Y + D Sbjct: 638 EDKEGLFSYIISCIVKFTKTG-KLKFPQRWADSKEEYAKENNPYGRFKDIYFSDLPGHNL 696 Query: 710 ESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKE 759 + + + E+ E Y + S + +T K G G+ + + + Sbjct: 697 PAKEVYPIFEEWYLNE--YSKNVPSRKKITQGFKALGIKTGMTKGYVTYK 744 >gi|10954590|ref|NP_052184.1| helicase-like protein [Sulfolobus islandicus] gi|1930088|gb|AAB51531.1| helicase-like protein [Sulfolobus islandicus] Length = 979 Score = 266 bits (680), Expect = 8e-69, Method: Composition-based stats. Identities = 123/866 (14%), Positives = 248/866 (28%), Gaps = 140/866 (16%) Query: 7 KEQAKQAIHNGFKLIPLRLGDKRP--QRLGKWEEQLLSSEKIDKL-----PACGFGFVCG 59 K A+ I GF + P+ K+P K+ + L+ E+ + + G Sbjct: 10 KRFAEWFIEQGFAIFPIDPQSKKPVISNWQKYSHEPLTDEEKKRFLEQIEKGYNYAVPGG 69 Query: 60 VGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPF---------RMNK 110 Q L D +SK+ K + L + + + + + N Sbjct: 70 Q--QNLVILDFESKELLEKWISKSALDELCRKTLC-VNTPHGGIHVYVQADNIPEHKFNP 126 Query: 111 EGIKKKKTTESTQGHLD-ILGCGQYFVAYNIHPKTKKEYTWTTP----PHRFKVEDTPLL 165 K Q + +LG G + K W + + + Sbjct: 127 AFTLNGKGIADLQSYNSYVLGVGSCINHKFC--DSDKC-KWRGQNHTTCYSLYNNNELKI 183 Query: 166 SEEDVEYLFKFFQEITVPLVKDKKSIIPS--KTWTNNNNRQYTNREITAFLSCFGEEFYN 223 D++ L KF E L + S + + + + ++ LS F + Sbjct: 184 GRADLKGLLKFLAEKGKELGIELSSNARAWLEGEKEETDVEKDLEKLKKELSRFNKFKGK 243 Query: 224 GSHDEWIPVVMAVHHE-----TRGSSKGKEIARRWSKQGSTY------------------ 260 V ++ + + A + QG +Y Sbjct: 244 TIEAIRSEVCQSIKKSLENVKSDKAKTMLNTAFQVVCQGKSYGEIQLDRSRGDWHVLKVL 303 Query: 261 -----------------DEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLL 303 D + F KWD + + + F + + K L Sbjct: 304 LSHGVTDVEVLKQLLPQDSKVFAPKWDRYFLHTLMKAWNEVKPFLQIIKNAKNKKTKEL- 362 Query: 304 ASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMK 363 ++ ++ + Y + +K N I + I + Sbjct: 363 KQELAEVLSQYIIRKYH---------IVTFIQKHSNGESIIGIFRWNRKKGIYEPIDETL 413 Query: 364 EDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLD 423 + + ++ + + ++ + + + + + ++T D Sbjct: 414 KKI--------IRHEIMRVIETFPKSEDEKSPMFYEVRNELVKLVYDEIRDLTLTEYDDD 465 Query: 424 SSSRFLGEQDGILDLETG-----------------QKVKPTKELYITKSTGTPFVEGEP- 465 ++ + ++ L+ + V + + +T E E Sbjct: 466 NTPLRIAFENCTLEWTSDKFKLIPADKRTEEHYAFHYVPHKIRVEVFNNTPYQVPELEEL 525 Query: 466 ----SQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLI 521 + L+ + + V +G L K + + G SGKST + L+ Sbjct: 526 ARKLCPKSLNAFKQWVGEKWV--TLFEIIGYTLYPATKFKLAFMLLGPRDSGKSTFLQLL 583 Query: 522 KYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM 581 K G Q ++ R L + + +ET E + + K + Sbjct: 584 KRILGKQNTVSIRL------RELFDPNNRFVAGFLFHKLVNLTAETKEYTIEDIDRFKTL 637 Query: 582 TGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRN-PDDAWWRRYIVIPFDKPIANRD 640 TGGD +T+ + + I NK +R+ D A+WRR+++I F N D Sbjct: 638 TGGDQITSDVKFKGP-ITFTPYAKLIIASNKLPDIRDKNDTAFWRRWLIIEFPNQFPNDD 696 Query: 641 ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDI--PEVCLKAKEEERQGTDTYQAWID 698 F Q + + +S+G PE D+ +++ Sbjct: 697 NWFRQTFTEEEIEGILTVSILAFARVMSRGQFDYQQTPEEVRDL---WLYNIDSVWSFVR 753 Query: 699 DC-----CDIGE---NLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGG 750 + +LW L K Y +Y +S +T L K F Sbjct: 754 TYEKKGFITVDPRNADLWVPRIELYKLYKDYCMDNGFPG---VSLKTFANKL-NKYFGIT 809 Query: 751 IKREKIEKEWKSK----RIIKGLKLK 772 ++ K+ K R G+ + Sbjct: 810 SMKKYFGKDPNGKEIRRRCFVGITIN 835 >gi|153810987|ref|ZP_01963655.1| hypothetical protein RUMOBE_01378 [Ruminococcus obeum ATCC 29174] gi|149832875|gb|EDM87958.1| hypothetical protein RUMOBE_01378 [Ruminococcus obeum ATCC 29174] Length = 385 Score = 266 bits (679), Expect = 1e-68, Method: Composition-based stats. Identities = 73/388 (18%), Positives = 144/388 (37%), Gaps = 17/388 (4%) Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQK--VKPTKELYITKSTG 457 + +A + + LD L ++ +LDL Q ++ +L ++K Sbjct: 3 NYRSRNVMVTDAKDLNFFDNTELDKDDFLLNCKNCVLDLSGDQPKELEHKADLLLSKICN 62 Query: 458 TPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRG-VGGSGKS 515 + + V+ ++Y + G L G + F G +GKS Sbjct: 63 ANYNPAATCTLWEKTVNEIMQGDSSKIEYLQKMSGRFLTGDTSEEEFYIFFGATTRNGKS 122 Query: 516 TLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA 575 T+ L+ Y G+ + S ++ A+P + +L G+R V+ SE ++ Sbjct: 123 TITELLLYLLGDYATTISPESL-AIKVNKDSRTASPDIAKLAGTRFVVASEPPRRMLFDS 181 Query: 576 AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP 635 + +K +TG D ++AR + N + + F + N + + R V+PF++ Sbjct: 182 SLVKTLTGRDTVSARFLHENEF-QFKPKFKLILNSNYLPVISDKTVFSSNRVKVVPFERH 240 Query: 636 IANRDASFAQKLET-KYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQ 694 ++ + K + + W ++G+ Y +GL+ P A E + +D Sbjct: 241 FTEKEQNKHLKEQLQQEIDGILNWCIQGLSLYRKEGLEP--PTAVQIATHEYSEDSDKIG 298 Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754 +I +C + + + + + YS++ R S LK K + + Sbjct: 299 KFISECLEKSDQNL-AAKDVYEKYSQWCNDCGLGVDGRTS---FYEELKTKNLLS---KT 351 Query: 755 KIEKEWKSKRIIKGLKLKPA-FESVDDN 781 K +IKG F VD N Sbjct: 352 GTVTGKTVKNVIKGYSFVDETFHPVDGN 379 >gi|45686089|ref|YP_003852.1| D5 family NTPase [Ambystoma tigrinum virus] gi|37722513|gb|AAP33258.1| D5 family NTPase [Ambystoma tigrinum stebbensi virus] Length = 975 Score = 265 bits (678), Expect = 2e-68, Method: Composition-based stats. Identities = 110/692 (15%), Positives = 207/692 (29%), Gaps = 132/692 (19%) Query: 174 FKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVV 233 + + L ++ +R E+TA L+ + W+ V Sbjct: 272 LADYSAVMAKLDVARQRKPAWNIDATKAHRLKRVTELTAMLTADLAD----DRQTWLNVG 327 Query: 234 MAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKW------DTFDFEEIGDTAKKRSTF 287 + +T GS++G ++ +SK+ DE+ W ++F + A+K + Sbjct: 328 FCLWQQTSGSAEGYKVWLSFSKKSDKCDEDECWTIWNNQMRPNSFTEGTLVYLAQKHNPG 387 Query: 288 TSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYI---W 344 L + K P + + A K M+ Y T+ WY+ D Sbjct: 388 AYLNWLQVKSTPVNDIGTNV--AMAKIMWDYYGHQFVCCGGKTQTWYRFDGLTWVESNQG 445 Query: 345 SLTLDKITASIMNFLVSMKEDV-----------FDLSEEPEDNNKNSKSPR--------- 384 + I+A + + D E ED+ +NS + Sbjct: 446 TDLRSLISAEGGPLRRLLTRQLDAVTAAKARGGRDSGNEDEDDEENSATDEDDSNPWDSE 505 Query: 385 -----------FWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQD 433 + +E + + D++DS + Sbjct: 506 LRRLDSEVLDAMVKRLRNNLKGIEMTGIKNNVLRECAELFYQPEFGDVIDSDPLLFAFAN 565 Query: 434 GILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFL----------------------D 471 G+ D G E +++ FV P + Sbjct: 566 GVYDFREGCLRDGRPEDKLSRRAPVDFVMFGPIPKARHPDNSPVMRPKRMPGESVQDHAR 625 Query: 472 LVSGYFESEEV-------------------------MDYFTRCVGMAL------------ 494 ++ FE ++V + Sbjct: 626 RLAECFEQDDVSASAGTMGKEDVESFSCNPEDFKGPVAKLLAFFASVFPDEGTRRFFLRN 685 Query: 495 -----LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549 +GGN + + G G +GK+ L + G V + + + P AG A Sbjct: 686 AAAIFVGGNPDKVVLFWTGTGNNGKTVTQTLFEKMLGCFAVKMSTQTLTGKK--PSAGSA 743 Query: 550 NPSLIRL-MGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY--GNTYSESPASFTP 606 NP + RL G R ++ E N ++ INA +K MTG D AR Y G T E F Sbjct: 744 NPEMARLGGGVRWAVMEEPNSDETINAGTLKSMTGNDSFFARDLYCAGKTTFEIKPMFKL 803 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--------------DASFAQKLETKYT 652 ++ N +++ D A W R V+PF+ D +KL+ Sbjct: 804 HVICNALPGIKDADQATWNRVRVVPFESTFVTPGTTAPADSKYVFPADTDITRKLDRLTA 863 Query: 653 LEAKKWFLKGVKA-YISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEES 711 W+L A ++ + P ++A ++ D ++ + ++ + Sbjct: 864 P--LAWYLVYCWACIQNERVKYVPPPKVMEATMAYQKEHDLFRQFTEEMLRKDLDSTLTC 921 Query: 712 HSLAKSYSEYREQELNYDRKRISTRTVTLNLK 743 ++ ++ + R V L+ Sbjct: 922 DDAYTAFRDWTSANSPHGTVRRPKGQVVKCLE 953 >gi|95928523|ref|ZP_01311270.1| Phage/plasmid primase P4-like [Desulfuromonas acetoxidans DSM 684] gi|95135313|gb|EAT16965.1| Phage/plasmid primase P4-like [Desulfuromonas acetoxidans DSM 684] Length = 498 Score = 264 bits (675), Expect = 3e-68, Method: Composition-based stats. Identities = 88/481 (18%), Positives = 172/481 (35%), Gaps = 44/481 (9%) Query: 296 KLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASI 355 + P+ + +D N Y + K W++ W+ + + Sbjct: 20 EKGPELDCDTLQTDYGNALRIKFYFDRLIFFHHAQKNWFR--------WTGCHWQRDTNQ 71 Query: 356 ---MNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAG 412 + + ++++ + ++ + F + SK ++ Sbjct: 72 CLTLQIVEAIRKILTVEIPWLRYLKEDKQRDDIAFPDTSFVEKSLSRSKIRAAGLLAADL 131 Query: 413 SIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDL 472 LD+ L Q+G +DL++G+ +E Y+TK F + F+ Sbjct: 132 MPLP---AHLDAHKELLNCQNGTVDLKSGELKDHDREDYLTKIAPFAFEKDAQCPRFIAF 188 Query: 473 VSGYFES-EEVMDYFTRCVGMALLGGNKAQRFIHIRG-VGGSGKSTLMNLIKYAFGNQYV 530 + F E + + + G +L G ++ + G G +GK+ L N+ + G + Sbjct: 189 LERAFPDNPEGIAFIQKIFGYSLTGDVSEKKIFILWGAAGNNGKTLLFNVFRGILGQCFC 248 Query: 531 INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR 590 + + ++ R + +L+G R V SET+ + N A IK +TGGD +TAR Sbjct: 249 VQLASESLVSGR---INAIRSDIAKLIGYRFVTASETDRRYKFNEALIKLLTGGDALTAR 305 Query: 591 LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLE 648 + + E FI N D A R +IPF I +D QKL Sbjct: 306 HPHEREF-EFTPELKLFIGTNAKPEFTLSDQAMLNRVCIIPFHVSIPPEEQDKQLTQKLI 364 Query: 649 TKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTD---------TYQAWIDD 699 + W ++G + + +GL + D T +I Sbjct: 365 NEEGEGILAWAIEGARLWAKEGLGENP------------FDQDSASVITPVITIDQFIKA 412 Query: 700 CCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKE 759 CC E++H L +++ Y+E + + ++ + + +K G R+ +E Sbjct: 413 CCTQNPGDREKTHDLMTAFNLYKEHTGD-ESPAVNVKAFSNMIKGFGTEAKHHRDGNYRE 471 Query: 760 W 760 Sbjct: 472 H 472 >gi|260459539|ref|ZP_05807793.1| phage/plasmid primase, P4 family [Mesorhizobium opportunistum WSM2075] gi|259034341|gb|EEW35598.1| phage/plasmid primase, P4 family [Mesorhizobium opportunistum WSM2075] Length = 329 Score = 264 bits (674), Expect = 4e-68, Method: Composition-based stats. Identities = 73/318 (22%), Positives = 132/318 (41%), Gaps = 11/318 (3%) Query: 466 SQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF 525 EF + + + R G L G Q + G G +GKST ++L+ + Sbjct: 1 MPEFKKFLIKVQPDPAIRAFLKRFCGYLLTGLTIEQVMLFFYGAGRNGKSTFVDLLCFIM 60 Query: 526 GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGD 585 G+ V + G+A P L RL G+R+V SE ++ A IK +TGG+ Sbjct: 61 GDYAVT-LSIDSFSGDNKRGGGEATPDLARLPGARLVAASEPEAGVKLKDALIKTLTGGE 119 Query: 586 CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASF 643 + R + + + E F + N + + D WRR +++P+ IA + D + Sbjct: 120 KIPVRRLHKD-FFEVDPHFKIVLSGNHKPRIDDDSDGIWRRLLLVPWTVQIAEGDTDRAL 178 Query: 644 AQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDI 703 +KL W ++G Y++ GL +IPE A E RQ +D +I C + Sbjct: 179 PRKL-RAEAGAVFAWMVEGAVDYLNHGL--EIPEGVRAASNEYRQESDAIGTFIRMACHV 235 Query: 704 --GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIG--GIKREKIEKE 759 + E+ L ++ ++ E + R + ++ F G G R+ + Sbjct: 236 TGNPDDKEKPIDLYHAFEKFAASEGVFAFNRSTFEKRFAKSAERSFEGPDGQMRQFQRQR 295 Query: 760 WKSKRIIKGLKLKPAFES 777 + +G+ ++P ++S Sbjct: 296 SHGETFYRGIGIRPEWQS 313 >gi|169342282|ref|ZP_02863361.1| D5 N like family [Clostridium perfringens C str. JGS1495] gi|169299663|gb|EDS81721.1| D5 N like family [Clostridium perfringens C str. JGS1495] Length = 463 Score = 263 bits (671), Expect = 9e-68, Method: Composition-based stats. Identities = 70/471 (14%), Positives = 161/471 (34%), Gaps = 18/471 (3%) Query: 318 IYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNN 377 + + + + + K V ++ + ++ K+ + ++ N Sbjct: 1 MLEDEKIIECEEMGIEFSKKTGKVKSFNPNKFATFTAKKLQIIYNKDSFYVYNDGIW--N 58 Query: 378 KNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILD 437 K S F + + K+ + + A + L+S+ R++ ++G+ D Sbjct: 59 KISDMYLFQKLRGKLQTYSDNIWSLKNEKEYIGALKRIVFFEEELNSNKRYINLRNGMFD 118 Query: 438 LETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLG 496 L T ++ E Y + + E F+ ++ F EE ++ VG L Sbjct: 119 LNTYSLMEHRPEFYSSIRIPVDYNEEAECPNFIRFLNQCFNGDEEAINLAQEWVGYILTA 178 Query: 497 GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRL 556 +AQ+ + + G+G +GK +++I G + + + +++ + S + + Sbjct: 179 ETRAQKALILYGLGKNGKGIFIDIISELIGQENISSIPMNELSR---------PFSRVCI 229 Query: 557 MGSRIVIISETN-ENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLF 615 G I +E +N K + G D +TA + + N Sbjct: 230 YGKLANISNENEFNGASLNTQYFKAIVGEDIITAEQKN-QPVIQFKPTARMVFSTNNLPH 288 Query: 616 VRNPDDAWWRRYIVIPFDKPIANRDASF-AQKLETKYTLEAKKWFLKGVKAYISKGLDVD 674 + A+ RR ++ F + D F ++ + W L G++ Sbjct: 289 TNDGGYAFMRRLCMLHFKNVVKEEDRDFYLREKLKEELNGIFNWALVGLRRLKENNFRFS 348 Query: 675 IPEVCLKAKEEERQGTDTYQAWIDDCCDIG-ENLWEESHSLAKSYSEYREQELNYDRKRI 733 K ++ + + + C + + E++ + +Y + + +I Sbjct: 349 ECNSSNKLLKQYEMELNPMILFFEQCVEKEHSDHREDNRIIYNTYKSWARANGMEGQAKI 408 Query: 734 STRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDNSNI 784 S + + + E K+ S R G+K+ F D+S I Sbjct: 409 SVQKFWRKFDA--YAKSLGYECESKKSNSFRYHTGVKIVGCFRISLDDSRI 457 >gi|51244031|ref|YP_063915.1| hypothetical protein DP0179 [Desulfotalea psychrophila LSv54] gi|50875068|emb|CAG34908.1| hypothetical protein, probably cold-shock inducible [Desulfotalea psychrophila LSv54] Length = 652 Score = 262 bits (669), Expect = 2e-67, Method: Composition-based stats. Identities = 64/361 (17%), Positives = 130/361 (36%), Gaps = 31/361 (8%) Query: 425 SSRFLGEQDGILDLETG----QKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESE 480 + +G L L + K Y T F + F ++ FE++ Sbjct: 302 DPNVINCLNGELHLNHKTGSWEPKSHDKLAYRTSQIPVEFDPTATAPRFKQFLNEIFETD 361 Query: 481 E----VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEAS 536 E G ++ + F+ + G G +GKS ++L++ G + + + S Sbjct: 362 EDSQDKTRALLEMCGYTMVAHCSYELFVILIGTGANGKSVFLSLLEAIVGPKNTVGVQPS 421 Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNT 596 + I++E + + I A++K + G+ T + + Sbjct: 422 QFDN---------RFQRGHMRHKLANIVTEIKQGEVIADAELKGIVSGEPSTVENKFKDP 472 Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFA-QKLETKYTLEA 655 + T + N R+ +A +RR +++ F++ ++ + + + Sbjct: 473 F-TMRPHVTCWFATNHMPHTRDFSEALFRRALILKFNRVFSDEEKNPKLKDELFAELPGI 531 Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLA 715 L + G P+ +AKEE R D Q +++DCC+ ES +L Sbjct: 532 LNLALHAYANAVLNG--FTKPDSSEQAKEEWRLEADQVQQFVEDCCEKSPYEEIESSTLF 589 Query: 716 KSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAF 775 ++Y + E RK +S ++ L + GF K K R++ G+ + F Sbjct: 590 RAYRSWAETNG--IRKMLSQKSFRDRLTRLGFGS--------KRNKQARLVTGIAMANNF 639 Query: 776 E 776 Sbjct: 640 P 640 >gi|297660619|ref|YP_003710330.1| phage/plasmid primase [Waddlia chondrophila WSU 86-1044] gi|297377495|gb|ADI39324.1| phage/plasmid primase [Waddlia chondrophila WSU 86-1044] Length = 683 Score = 261 bits (667), Expect = 3e-67, Method: Composition-based stats. Identities = 99/509 (19%), Positives = 181/509 (35%), Gaps = 40/509 (7%) Query: 275 EEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWY 334 +E A++ + K L +++ + +F + +L+ Sbjct: 201 DEKRKEAEELRRYVEQHEKEKTENEKVLERLNKNESGDAEIFVELFEKKYLFDPTEG--- 257 Query: 335 KKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKS--PRFWFNTDYR 392 Y+W T I E V D + +S + + Sbjct: 258 --KNGAFYLWDGCQW--TLDIHKERYKDFEKVSDTYLIATSDESIDESVSKELFKRSQQL 313 Query: 393 RQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYI 452 R + ++ ++ + L D L +GI++L+TG +E YI Sbjct: 314 RTSRRRSNVLETVSAYLSFKHS-------WDYCPNKLPCSNGIINLKTGDLETAQRENYI 366 Query: 453 TKSTGTPFVEGEPSQEFLDLVSGY-FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGG 511 K T + + +FL + +E+ + R +G ALLG K ++ + G G Sbjct: 367 KKVCPTSYEKNANCPKFLKFLDDITLGDKELSSFIGRVIGYALLGVPKEEKIFYFYGNGR 426 Query: 512 SGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEND 571 +GK TLM++I++ G + Q PP + NP L L G R+ + SE NE Sbjct: 427 NGKGTLMHVIQHVLGALSKTFPSEMLLSQRNPPSSSSPNPELANLEGVRMAVFSEINEGR 486 Query: 572 EINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIP 631 +I++AK+K ++G D + R Y N + + T + N + D A W R I+IP Sbjct: 487 KIDSAKVKNLSGRDIIPCRRLYSNVDLQITPTHTMILQTNYKPKAPSEDKALWSRNILIP 546 Query: 632 FDKPIANRDASFA---------QKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKA 682 F + + KW + G Y GL V P+ + Sbjct: 547 FKARFVKEPKDGENEREIKESLKDELLEEAKGILKWMVDGCLEYQEIGLKV--PQSVIDQ 604 Query: 683 KEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNL 742 E R+ D ++++ C + + + + Y + + K + ++ L Sbjct: 605 TEGYRKENDGIGCFLEEMCFQDPAVSTQKSKMEAAIKNYCKAN---EMKEPTRNEISDYL 661 Query: 743 KQKGFIGGIKREKIEKEWKSKRIIKGLKL 771 K + E KG+K+ Sbjct: 662 KIR---------FKEGRKSQGSYWKGIKI 681 >gi|298249763|ref|ZP_06973567.1| phage/plasmid primase, P4 family [Ktedonobacter racemifer DSM 44963] gi|297547767|gb|EFH81634.1| phage/plasmid primase, P4 family [Ktedonobacter racemifer DSM 44963] Length = 480 Score = 259 bits (662), Expect = 1e-66, Method: Composition-based stats. Identities = 86/481 (17%), Positives = 172/481 (35%), Gaps = 39/481 (8%) Query: 300 KGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFL 359 L+ D N F + FL+ + ++ + Sbjct: 17 SELMDFSADDGGNADTFEVLYGSDFLHVPELG---------WLHYNGKFWEQDR------ 61 Query: 360 VSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITS 419 V + + + +++V A +S + Sbjct: 62 ---AALVRAVEDTLVQRRLEAVRCDKEKIVGVTKRDVFRIDGATKLLES-----RLNADI 113 Query: 420 DLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-- 477 + D++ L +G+++L TG T + T + S E+ +S Sbjct: 114 EDFDNNPDLLNVANGVVELSTGDLAPHDPSQRFTYALATDYDPMADSSEWEAFLSQAVTP 173 Query: 478 ----ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533 E +E++++ + VG ++ G + +R ++ G SGK T + + Sbjct: 174 DGQEEDKELLNFIQQAVGYSVTGHTREERLFYVYGPTRSGKGTFTESLMTLVPRPLSMEV 233 Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593 + + R + N L + SR++ SE+N+ +N KIKQ+TGG+ + A + Sbjct: 234 DFNTFTARR--DGNDQNFDLADMKPSRLIFASESNKYQSLNPGKIKQLTGGNWVQAAFKH 291 Query: 594 GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF-DKPIANRDASFAQKLETKYT 652 +S + ++ N + DDA W R +V+ F + D S +L+ Sbjct: 292 KQRFS-YRPQYAVWLSSNHKVMGDPEDDALWYRVLVVEFPNSHKGKEDTSLKARLKQPEA 350 Query: 653 L-EAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEES 711 KW + G + + + +PE A + R D WI+D + + S Sbjct: 351 QRGILKWVVDGAFNWYATE-RLQVPEGVKLATQAHRDDLDNIALWINDEVIEEDGAFASS 409 Query: 712 HSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIE-KEWKSKRIIKGLK 770 L +SY + E + +R + L LK++G+ +E + K R +G++ Sbjct: 410 AELYQSYKPWCEDNG---VEPKKSRELGLALKKRGYEDSKDYILLENGKRKQVRGWRGVR 466 Query: 771 L 771 + Sbjct: 467 V 467 >gi|325685155|gb|EGD27281.1| phage/plasmid primase [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 831 Score = 259 bits (661), Expect = 2e-66, Method: Composition-based stats. Identities = 122/826 (14%), Positives = 236/826 (28%), Gaps = 113/826 (13%) Query: 29 RPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQ------------PLYAFDIDSKDEK 76 + W + +S+ + A G PL D+D + Sbjct: 34 KSTEATGWTDYQTASKALT---AANNALQEGKITGVIKFTFSLRITPPLVFIDVDDIPDP 90 Query: 77 TANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFV 136 A+ L + Q L F EG K T ++ G+Y Sbjct: 91 EASAQFKDLTKLTKGGYCEVSQSGNGLHYFV---EGKLDKAHKGKT---YEMYTGGRYVA 144 Query: 137 AYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKT 196 T + + + + + Q LV + + Sbjct: 145 F------TGNQVSNSDSILALTESEIKAIVSYCGFKWTGKKQAKEPLLVTTPQPTGNGRH 198 Query: 197 WTNNNNRQYTNREITAFLSCFGEEFYNGSH----DEWIPVVMAVHHETR----------- 241 W +N A + + +G + + V A+ + Sbjct: 199 WGADNGLTAEQVLSNAINNPELKAVASGDYSAYNGDHSSAVQALVNSLAFYANGDAAKTD 258 Query: 242 ------GSSKGKEIARRWSKQGSTYDEENFNYKWD------------------TFDFEEI 277 S S+ +T+ + + E Sbjct: 259 QAYRSTPSFTDDTKWDA-SRGDTTWGAQTIAKAINYVQTKHPDHGYFPARQNSGMRVVEP 317 Query: 278 GDTAKKRSTFTSLFYHHGKLIPKGLL---ASRFSDAYNKAMFSI-YKKGHFLYTADTKAW 333 G+ A + + + G ++ F+ Y KG +Y KAW Sbjct: 318 GERATAETLKIKIDGVEREFPFNGYFYNRDYEMTEVGFANRFADWYAKGKLVYHPGLKAW 377 Query: 334 YKKD--KNNVYIWSLTLD------KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRF 385 + + I N V++K++ D +K K Sbjct: 378 LMYNPETGSWMPNGDDRLGTTFNQTPEKLIDNLRVNLKKEKRLWLTVGRDPHKPDKQSFG 437 Query: 386 WFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVK 445 + + + + K+T + ++ + L + G +DL+TG Sbjct: 438 EKAYNKGYERISSAAGQKATLELAQSRLTVR----AFNDCKTELNTRTGWIDLKTGAISP 493 Query: 446 PTKELYITKSTGTPFVEGEPS----QEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKA 500 + K+T + + + F E++DY C+G ++ G Sbjct: 494 HSPAKLFDKATDAGLPNKATEGDGGKLWDRFLKETFCGDLELIDYVQACIGYSVTGKINE 553 Query: 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA-NPSLIRLMGS 559 + G GG+GKS + I G+ + + I N+ G A +P L L G Sbjct: 554 EVMFICEGSGGNGKSIFLECINEVLGDYSSVIPIETLIDNNKAQRDGSAPSPDLASLKGK 613 Query: 560 RIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNP 619 R V+ +E + I+ +K +TGG + R+ + N F + N + Sbjct: 614 RFVMTTEPKKQVTIDDGIVKTVTGGTKLNVRMLHQNPIV-FLPQFKIWWQSNGLPRIAIK 672 Query: 620 DDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAKKWFLKGVKAYISKGLD----- 672 + + RR IVIPF + D + KL K KW ++GV + ++ Sbjct: 673 EHSMLRRLIVIPFKNEVRGDAVDINLKSKL-MKEKEFILKWCIEGVAKWQARDGKALYHP 731 Query: 673 VDIPEVCLKAKEEERQGT----DTYQAWIDDCCDIGENLWEE--SHSLAKSYSEYREQEL 726 P +A D+ + W+++ + + + Y Y ++ Sbjct: 732 KYQPAAVEEATAGLWNSAHVPVDSIKQWLENGNYEEGHSSTPPKVKEVYEDYLAYCKEHE 791 Query: 727 NYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLK 772 + + L ++G K + + LK Sbjct: 792 LKVPSAYTKQGFNKELARRG---------HHKRPGTGNSYVWISLK 828 >gi|303245368|ref|ZP_07331652.1| phage/plasmid primase, P4 family [Desulfovibrio fructosovorans JJ] gi|302493217|gb|EFL53079.1| phage/plasmid primase, P4 family [Desulfovibrio fructosovorans JJ] Length = 576 Score = 258 bits (658), Expect = 3e-66, Method: Composition-based stats. Identities = 95/515 (18%), Positives = 184/515 (35%), Gaps = 43/515 (8%) Query: 304 ASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDK--------ITASI 355 A R+ + + A+ +G Y A Y+ + + + I A Sbjct: 57 AFRWKNVGDAAIAIKLLRGKICYDAVADKPYRFNCTHWLRDKNANWRKALFGVADIYAIR 116 Query: 356 MNFLVSMKEDVFDLSEEPEDNNKNSKS---PRFWFNTDYRRQNVEENSKAKSTAQSLEAG 412 + + V + + + S + + + V + EA Sbjct: 117 ARHYLEQAKTVEEECNAAPKDEQKSLKPLVKKAQKIAEAWIKRVNSCRDTSYVRKIWEAA 176 Query: 413 SI----FSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVE-GEPSQ 467 + +I+ D + L ++ ++DLE G+ + P Y K+ PFV+ + Sbjct: 177 TSGDGSLAISGDEWNQRPTLLPCKNCVVDLEKGKPLDPDPFQYFNKAAIAPFVDLHAEAP 236 Query: 468 EFLDLVSG-YFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFG 526 FLD +S ++++DYF VG A G F G + KS + ++ G Sbjct: 237 FFLDTISKALCRDKQLIDYFDYMVGFAATGLQTKDFFCAYGPKGDNAKSVVFEWLRKVLG 296 Query: 527 NQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM-TGGD 585 + + + + A +PS+++L G R+ + SE ++ + AKIK + +GGD Sbjct: 297 DFAGTIKVETILDEKFMRSADGPSPSMLKLRGLRMAVTSEADKKHQFAMAKIKSICSGGD 356 Query: 586 CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI-------AN 638 + AR E T + N DDA+++R VIPF + Sbjct: 357 RLEARGINAVDIIEFNPELTLIMHSNHIPKASGNDDAFYKRIKVIPFRAKFIAEKDGPED 416 Query: 639 RDASFAQKLET---------KYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQG 689 D + + ++ + G P L ++ R Sbjct: 417 PDHHIYHAKSRSRIVDPTLTREMPGIMAYIVRCAVKALKAGDMPPAPPAVLIETDQYRTD 476 Query: 690 TDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKR-ISTRTVTLNLKQKGFI 748 D ++ +C D N E+ + ++ ++ +E K S + +LKQ Sbjct: 477 QDIVGQFLRECTDPDSNNQEQMKDIYFAFRKWCAEEQMMPPKAIWSQNALGKDLKQ---- 532 Query: 749 GGIKREKIEKEWKSKRIIKGLKLKPAFESVDDNSN 783 R ++E+ + KGL++KP + + + N Sbjct: 533 ----RNELERIPSNVTYYKGLRIKPQWRKQEGDIN 563 >gi|109287999|ref|YP_654693.1| hypothetical protein MIV121R [Invertebrate iridescent virus 3] gi|123808611|sp|Q196T9|VF184_IIV3 RecName: Full=Putative helicase 121R gi|106073622|gb|ABF82151.1| hypothetical protein MIV121R [Aedes taeniorhynchus iridescent virus] Length = 941 Score = 257 bits (657), Expect = 4e-66, Method: Composition-based stats. Identities = 121/791 (15%), Positives = 250/791 (31%), Gaps = 109/791 (13%) Query: 55 GFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIK 114 F G G + L+A DID E + + +++G+ + +I + N E + Sbjct: 169 AFRLGSG-KRLFA-DIDDAPENFIDDVTNKCWLMYGSSKSEDKKPYRISQVYSGNLEPMD 226 Query: 115 KKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYL- 173 + F + K ++ T T + + +S E L Sbjct: 227 LYEA----------------FSIKPFYTKEEEPITVTVDNVKKILPQLLSISSIKKEVLN 270 Query: 174 FKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVV 233 K ++ +P K + N+ + ++ L ++ N ++ W + Sbjct: 271 VKTPMDLKIPTKIYLKQELKDIEGENSETIKRNLKDAKDLLKILNKKRANE-YNSWWDIG 329 Query: 234 MAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYH 293 + + + G I +WS YD + W++ K SL ++ Sbjct: 330 IILFNIGHGCEDAFTIWDKWSSYSDKYDPDACVQVWNSMHLR--NPRFSKIKGMGSLRWY 387 Query: 294 HGKLIPKGLLAS------------------------RFSDAYNKAMFSIYKKGHFLYTAD 329 + KG A + M +Y Y Sbjct: 388 VKQDNLKGYTAWVDKMHGLVLDEKNLVECVTRLEIMTTDTPLARLMLDLYSGE---YVFS 444 Query: 330 TKAWYKKDKNNV------YIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSP 383 WY + + + + I+ + E ++ +++ +++ Sbjct: 445 DAGWYSFNGTIWSPVKVLKDFRVKFEHISTKYKEMRKRIMELIYHKNDDSGRDSEEDSQE 504 Query: 384 R-------------------FWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDS 424 + + + +E + + E SDLLD Sbjct: 505 EEVSSSQEQLSAKHRAILMAKYRDINRAINKLENFATQNGILKMCEVFFYNEDFSDLLDE 564 Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ-----EFLDLVSGYFES 479 + + ++G+ D ET K + Y++K+ + + E + +S F Sbjct: 565 NPLLIAFKNGVFDFETLTFRKGLQSDYLSKTLNIRYDDTLTDDSEEVLELYNFLSKIFPD 624 Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539 E+V YF + GGN+ + + G G +GKS L + G + + S + Sbjct: 625 EKVRAYFVDQICEVFRGGNRDKIAMFWTGNGNNGKSVTQRLFETMIGKKLAVKLSTSVLT 684 Query: 540 QNRPPEAGKANPSLIRLMGSRIV-IISETNENDEINAAKIKQMTGGDCMTARLNYGN--T 596 + P G+ NP L RL G + E + ++I + + +TGGD + R + Sbjct: 685 ERIQP--GQPNPQLTRLRGGIRWGVFDEWGKTEQILSGSLNVLTGGDSLPCRDLFQKGSD 742 Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR----------------- 639 S+ F + N+ +++ DA W R +IPF+ R Sbjct: 743 SSDFTPMFKLLCICNELPCLKDAVDATWDRIRIIPFESKFVAREKCPETEQEQREKKLFL 802 Query: 640 -DASFAQKLETKYTLEAKKWFL-----KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTY 693 D QK + A W+L + K + V IP+ AK + + D Sbjct: 803 CDTEITQKDRMESLARALGWYLVKIFKEKEKKRRNGTYQVTIPDKVNDAKLKYQAKCDIL 862 Query: 694 QAWIDD-CCDIG-ENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGI 751 ++++ ++ + S+ + + ++ ++ K + Sbjct: 863 AFFMEETYLKTDNQDHKIPFDDMYISFKNWYINSFSGKMVTLNKHEFIEMVRNKYNLTET 922 Query: 752 KREKIEKEWKS 762 + W Sbjct: 923 DKALRGYMWNR 933 >gi|209808767|gb|ACI88730.1| gp88 [Mycobacterium phage Troll4] Length = 982 Score = 256 bits (654), Expect = 1e-65, Method: Composition-based stats. Identities = 144/979 (14%), Positives = 260/979 (26%), Gaps = 236/979 (24%) Query: 6 WKEQAKQAIHNGFK-LIPLRLGDKR--PQRLGKWEEQLLSSEKIDKLPA------CGFGF 56 ++ + G+ +PL K+ P S + I Sbjct: 13 FRRAVEAYRERGWAGTLPLPPRSKKKPPTGYTGHTAPYPSDDDIASWLRMPKYAQGNICL 72 Query: 57 VCGVGEQP--------LYAFDIDSKD-----EKTANTFKDTFEILHGTP--IVRIGQKP- 100 G E L D+D + ++ L P + + Sbjct: 73 HLGPVETRGPDGERLELIGIDVDDYEEGGKVKEGGKQLAALEAELGPLPKTYISSSRTGV 132 Query: 101 KILIPFRMNKEGIKKKKTTESTQGHLDIL-GCGQYFVAYNI-HPKT-----------KKE 147 + F + + H+DI+ +Y + + HP + Sbjct: 133 SGIRFFLVPAQH----AWMGKAAPHIDIVCKTYRYAIVFPSWHPGEVDEETGKVITEGGQ 188 Query: 148 YTWTTP--------PHRFKVEDTPLLSEEDVE---------------------------Y 172 Y W P V D PLL + VE + Sbjct: 189 YKWRDPQGQLLDGLEDIPDVNDLPLLPDAWVERLSRGGMKLSDEDAEIDMDLNVDEMFRW 248 Query: 173 LFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPV 232 K K W + + H W Sbjct: 249 AVGTLPGSDEDAQPCSKMKAAVKYWQGQIEEDASTHDKITGSHWNLACLATEGHTGWRQA 308 Query: 233 VMA---------VHHETRGSSKGKEIARRWSKQ--------------------GSTYDEE 263 + A + + + SK + Y+ Sbjct: 309 MAAVDASVAEDTIKNRGKREISELRSEIMRSKVNALRKLKAQIDKGRRNVLTVCTCYEPS 368 Query: 264 NFNYKWDTFDF--------------EEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSD 309 + D F E + + R + P+ SD Sbjct: 369 --ADELDAFTASLNSAKAAASEPTEEREVASGEGRDGY--WRDGMPNGTPQDPGDYEQSD 424 Query: 310 AYNKAMFSIYKKGHFLYTADTKAW------------------YKKDKNNVYIWSLTLDKI 351 N + K + Y W Y++ K ++ L + Sbjct: 425 QGNGDHWIDLHKDNAFYVPALGQWIMWTGKSWIVGDGCAERSYRRVKARQKRYAEQLMRR 484 Query: 352 TASIMNFLVSMKEDVFDLSEEPED---NNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQS 408 A + +++ + + +EE + A Sbjct: 485 AAELKAAQDPTANAAVAMAKSWRSWATRSGDVGPIERALKAASMELGIEEGELNANPALI 544 Query: 409 LEAGSIFSITSDLLDS-----------------------------------------SSR 427 + + LDS Sbjct: 545 CCENGVLELDLSPLDSLADDSQSAGRNGRNGRNGRNGRNGRNGTANVASLAEDDEEFDPD 604 Query: 428 FLGE-QDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------------SQEFLDLV 473 + + + + +E +T STGT ++ + + + V Sbjct: 605 YEAVAPN-----SHVRLREIRREDLLTLSTGTNYLPWQELVAGEFGKQEALYASTWARAV 659 Query: 474 SGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533 Y EEV + + +G +LLG N+ + + + G GSGKST +N A G+ + Sbjct: 660 EMYLPDEEVRLFLQKLLGYSLLGDNRERIVVFLHGPTGSGKSTFLNATLNALGDYADV-V 718 Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593 + +R + NP+L + RIV SE ++ + ++A K++TGGD +TA L Y Sbjct: 719 DLGIFKGDR-----QTNPALAYALPKRIVTCSEASQRNVLHADMFKRITGGDPLTAELKY 773 Query: 594 GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETK-YT 652 N + +F P+I N + D A R +V+ F++ I +D L + Sbjct: 774 SNESVKRKPAFVPWIATNTPPSIPGADAAVVDRTVVVGFNEQIRKQDVGMNAMLSSPRAK 833 Query: 653 LEAKKWFLKGVKAYISKGLDV-DIPEVCLKAKEEERQGTDTYQAWIDDC----------- 700 W ++G Y +GL D P E +I +C Sbjct: 834 TAVLAWAVEGWGMYRREGLRRADFPAAVKGESIEFTNQFSDVSEFISECVEEAPVSLRRK 893 Query: 701 --------CDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIK 752 CD E + Y + ++ DR + + LK G+ + Sbjct: 894 AERRNWRVCDWPEEWHTTVSEVYDVYVTWCQENRVADRNIMKKNGFSRQLKDYGY----R 949 Query: 753 REKIEKEWKSKRIIKGLKL 771 E ++K+ + R G KL Sbjct: 950 AEVVKKDGFTSRTYAGFKL 968 >gi|31983840|ref|NP_858448.1| RepA protein [Sulfolobus islandicus] gi|11137542|emb|CAC15841.1| RepA protein [Sulfolobus islandicus] Length = 896 Score = 255 bits (652), Expect = 2e-65, Method: Composition-based stats. Identities = 113/835 (13%), Positives = 235/835 (28%), Gaps = 86/835 (10%) Query: 9 QAKQAIHNGFKLIPLRLGDKRP--QRLGKWEEQLLSSEKIDKL-----PACGFGFVCGVG 61 AK + +GF + P+ K+P + K+ Q L+ E+ K + G Sbjct: 38 YAKMFVEHGFAIFPIDPETKKPVSKEWQKYSHQPLTEEEKQKFLEMISQGYNYAVPGGQ- 96 Query: 62 EQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPF----RMNKEGIKKKK 117 + L D + K+ + L + + + ++ + Sbjct: 97 -KNLVILDFEDKELLKNWITGTALDNLCKEKTFCVETPHGGIHIYLQADKVPEHKFNPLF 155 Query: 118 TTESTQGHLDILGCGQYFVAYNI-----HPKTKKE-YTWTTPPHRFKVEDTPLLSEEDVE 171 + +G D+ Y V H + K + + + E ++ Sbjct: 156 -IKDGKGIADLQSFNSYVVGPGSCINHKHCDSNKCNWRGKNYIGFYIPIKDRQIGEIKLK 214 Query: 172 YLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIP 231 ++ + + L + + + ++ T +E + +D Sbjct: 215 DFLRWLADKSKSLGIELANNARAWLEGKKEEKEDTAKEFEELRKELIK------YDSGKS 268 Query: 232 VVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLF 291 + ++ + +G +Y E + + + L Sbjct: 269 IERIKEEICNKKPP--KLIKHIICEGKSYAEAGIDRSRGDWRVILYLMRHGVTDSGKILQ 326 Query: 292 YHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKI 351 K + + + A KA K I D+I Sbjct: 327 LLPSDSKAKDNEKWDAKKYFAVTLSKAWNIVKKYLEAKKKAKEDKSTAKALIIEAIADEI 386 Query: 352 TASIM-------NFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKS 404 + + L K +F +++ + N K+ Sbjct: 387 MHEHILSTFIQTDNLKESKIGLFRFNKKKGIFEPFDERIEKIINKKLEEYKEFPLGSDKT 446 Query: 405 TAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGE 464 I T L + ++G L+ + + K +++ Sbjct: 447 RVVRNIKEEIMRRTQRQLLLEPLRIAFKNGTLEWTDKGIIWYDSKERTYKQYAFHYIDWN 506 Query: 465 -------------------------PSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNK 499 + L+ + + + + +G L Sbjct: 507 LRIEEIEKFNEREITVQDIEDLARRVCPKALETFKQWVDDQWI--LLYEIIGYTLYPKYI 564 Query: 500 AQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGS 559 + I + G G +GKST +NL+ G V IM+ + I L Sbjct: 565 FNKAILLVGNGSNGKSTFLNLLLKILGKNNVTAVSLKRIME-------GDRFAPIELYHK 617 Query: 560 RIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNP 619 I SE N K++TG D + + + N+ V++ Sbjct: 618 LANINSELFTFKVTNTDLFKKLTGEDYIIGEKKFRDPMY-FINYAKLINATNELPEVKDQ 676 Query: 620 DDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVC 679 +WRR+IVI F F + + + + + D + Sbjct: 677 SYGFWRRWIVIEFPHQFPPDPNFFDKTFKESEIEGIITVSVLAFSRVLQQK-KFDFEDSS 735 Query: 680 LKAKEEERQGTDTYQAWIDDCCDIGE--------NLWEESHSLAKSYSEYREQELNYDRK 731 KE + +D+ A++ D + E +L+ L ++Y+E+ + DRK Sbjct: 736 ADIKELWERKSDSVYAFVKDLIENNEVEYDPRNGDLFTPVKELYQAYAEWCNEN---DRK 792 Query: 732 RISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDNSNIID 786 + T T L+ + I ++ E+ W G++LK S N D Sbjct: 793 PEAQSTFTKRLESRFRIIKSQKRIGERVW----CYVGIRLKNNNISTGSNEKPGD 843 >gi|10954551|ref|NP_044372.1| hypothetical protein pRN1_p6 [Sulfolobus islandicus] gi|1345114|gb|AAC44111.1| ORF904; Method: conceptual translation supplied by author [Sulfolobus islandicus] gi|147842920|dbj|BAF62550.1| rep904 [synthetic construct] Length = 904 Score = 254 bits (648), Expect = 4e-65, Method: Composition-based stats. Identities = 123/825 (14%), Positives = 246/825 (29%), Gaps = 92/825 (11%) Query: 8 EQAKQAIHNGFKLIPLRLGDKRP--QRLGKWEEQLLSSEKIDKLPA-----CGFGFVCGV 60 AK + +GF +IP+ K+P + K+ ++ S E+ + + G Sbjct: 45 RYAKWFLEHGFNIIPIDPESKKPVLKEWQKYSHEMPSDEEKQRFLKMIEEGYNYAIPGGQ 104 Query: 61 GEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIP--------FRMNKEG 112 + L D +SK++ A + E L + I I ++N Sbjct: 105 --KGLVILDFESKEKLKAWIGESALEELCRKTLCTNTVHGGIHIYVLSNDIPPHKINPLF 162 Query: 113 IKKKKTTESTQGHLD-ILGCGQYFVAYNIH----PKTKKEYTWTTPPHRFKVEDTPLLSE 167 + K Q + +LG G + P ++ YT + + +S+ Sbjct: 163 EENGKGIIDLQSYNSYVLGLGSCVNHLHCTTDKCPWKEQNYTTCYTLY----NELKEISK 218 Query: 168 EDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHD 227 D++ L +F E L +K W + L + +G Sbjct: 219 VDLKSLLRFLAEKGKRLGI--TLSKTAKEWLEGKKEEEDTVVEFEELRKELVKRDSGKPV 276 Query: 228 EWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTF 287 E I + + + + + TY + N + + Sbjct: 277 EKIKEEICTKSPPK-------LIKEIICENKTYADVNIDRSRGDWHVILYLMKHGVTDPD 329 Query: 288 TSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLT 347 L K + + + A KA K + Sbjct: 330 KILELLPRDSKAKENEKWNTQKYFVITLSKAWSVVKKYLEAKRKAQKDKSTAKALLIEAI 389 Query: 348 LDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQ 407 +++ + + + NK + + NV+ + Sbjct: 390 AEEVLHEHFLVTFIQTDQLKESKIGLFRFNKKKGIFEPFDERIEKIINVKLEEYKEFPLG 449 Query: 408 SLEAGSIFSITSDLLDSSSRFL-------GEQDGILDLETGQKVKPTKELYITKSTGTPF 460 S ++ I +I +++ + R L ++G L+ ++ + K + Sbjct: 450 SDKSRVIRNIKEEIMRRTQRLLLEESLRIAFRNGTLEWDSKGVTWYDVKERTPKVYSFNY 509 Query: 461 VEGE-------------------------PSQEFLDLVSGYFESEEVMDYFTRCVGMALL 495 V+ L+ + + + V +G Sbjct: 510 VDWNLKIEEIEKFNMKEITVEDIENLARRVCPRSLETFKQWVDDKWV--LLFEVIGYTFY 567 Query: 496 GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIR 555 + I + G G +GKST +NL+ G + V IM+ + I Sbjct: 568 PKYIFNKAILLTGAGANGKSTFLNLLLKILGQKNVSAMPLKRIME-------SDRFASIE 620 Query: 556 LMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLF 615 L + SE N K++TG D + + + + F N+ Sbjct: 621 LFHKLANVSSELFAFKITNTDLFKKLTGEDYIEGQKKFRDP-IYFINYAKLFNATNELPV 679 Query: 616 VRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDI 675 V + +WRR+IVI F F + + + + + D Sbjct: 680 VSDQSYGFWRRWIVIEFPHQFPPDPNFFDKTFTVEEVEGVITVAVIAFARVLQQK-KFDF 738 Query: 676 PEVCLKAKEEERQGTDTYQAWIDDCCDIGE--------NLWEESHSLAKSYSEYREQELN 727 + KE + TD+ A++ + + +L+ + ++Y E+ E+ Sbjct: 739 EDSSANVKELWERKTDSVYAFVKELLETERAEYDPANGDLFMPTEDFYQAYLEWSEEN-- 796 Query: 728 YDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLK 772 D K S VT L+ K I ++K + K G++LK Sbjct: 797 -DTKAESKAVVTQRLQSK---FRITKDKKKINGKRVWCYVGIRLK 837 >gi|109522656|ref|YP_655468.1| gp89 [Mycobacterium phage PLot] gi|88910763|gb|ABD58688.1| gp89 [Mycobacterium phage PLot] Length = 983 Score = 254 bits (648), Expect = 5e-65, Method: Composition-based stats. Identities = 151/993 (15%), Positives = 274/993 (27%), Gaps = 233/993 (23%) Query: 6 WKEQAKQAIHNGFK-LIPLRLGDKR--PQRLGKWEEQLLSSEKIDKLPA------CGFGF 56 ++ + G+ +PL K+ P S + I Sbjct: 13 FRRAVEAYRERGWAGTLPLPPRSKKKPPTGYTGHTAPYPSDDDIASWLRMPKYAQGNICL 72 Query: 57 VCGVGEQP--------LYAFDIDSKD-----EKTANTFKDTFEILHGTP--IVRIGQKP- 100 G E L D+D + ++ L P + + Sbjct: 73 HLGPVETRGPDGERLELIGIDVDDYEEGGKVKEGGKQLAALEAELGPLPKTYISSSRTGV 132 Query: 101 KILIPFRMNKEGIKKKKTTESTQGHLDIL-GCGQYFVAYNI-HPKT-----------KKE 147 + F + + H+DI+ +Y + + HP + Sbjct: 133 SGIRFFLVPAQH----AWMGKAAPHIDIVCKTYRYAIVFPSWHPGEVDEETGKVITEGGQ 188 Query: 148 YTWTTP--------PHRFKVEDTPLLSEEDVE---------------------------Y 172 Y W P V D PLL + VE + Sbjct: 189 YKWRDPQGQLLDGLEDIPDVNDLPLLPDAWVERLSRGGMKLSDEDAEIDMDLNVDEMFRW 248 Query: 173 LFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPV 232 K K W + + H W Sbjct: 249 AVGTLPGSDEDAQPCSKMKAAVKYWQGQIEEDASTHDKITGSHWNLACLATEGHTGWRQA 308 Query: 233 VMA---------VHHETRGSSKGKEIARRWSKQ--------------------GSTYDEE 263 + A + + + SK + Y+ Sbjct: 309 MAAVDASVAEDTIKNRGKREISELRSEIMRSKVNALRKLKAQIDKGRRNVLTVCTCYEPS 368 Query: 264 NFNYKWDTFDF--------------EEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSD 309 + D F E + + R + P+ SD Sbjct: 369 --ADELDAFTASLNNAKAAASEPTEEREVASGEGRDGY--WRDGMPNGTPQDPGDYEQSD 424 Query: 310 AYNKAMFSIYKKGHFLYTAD--------TKAW----------YKKDKNNVYIWSLTLDKI 351 N + K + Y K+W Y++ K ++ L + Sbjct: 425 QGNGDHWIDLHKDNAFYVPALGQWIMWTGKSWIVGDGCAERSYRRVKARQKRYAEQLMRR 484 Query: 352 TASIMNFLVSMKEDVFDLSEEPED---NNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQS 408 A + +++ + + +EE+ + A Sbjct: 485 AAELKAAQDPTANAAVAMAKSWRSWATRSGDVGPIERALKAASMELGIEESELNANPALI 544 Query: 409 LEAGSIFSITSDLLDS------------------------------SSRFLGEQDGILDL 438 + + LDS + L E D DL Sbjct: 545 CCENGVLELDLSPLDSLADDSQSAGRNGDRGRRNGRNGRNGRNGTANVASLAEDDEEFDL 604 Query: 439 ETG--------QKVKPTKELYITKSTGTPFVEGEP-------------SQEFLDLVSGYF 477 + + + +E +T STGT ++ + + + V Y Sbjct: 605 DYEAVAPNSHVRLREIRREDLLTLSTGTNYLPWQELVAGEFGKQEALYASTWARAVEMYL 664 Query: 478 ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537 EEV + + +G +LLG N+ + + + G GSGKST +N A G+ + + Sbjct: 665 PDEEVRLFLQKLLGYSLLGDNRERIVVFLHGPTGSGKSTFLNATLNALGDYADV-VDLGI 723 Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597 +R + NP+L + RIV SE ++ + ++A K++TGGD +TA L Y N Sbjct: 724 FKGDR-----QTNPALAYALPKRIVTCSEASQRNVLHADMFKRITGGDPLTAELKYSNES 778 Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETK-YTLEAK 656 + +F P+I N + D A R +V+ F++ I +D L + Sbjct: 779 VKRKPAFVPWIATNTPPSIPGADAAVVDRTVVVGFNEQIRKQDVGMNAMLSSPRAKTAVL 838 Query: 657 KWFLKGVKAYISKGLDV-DIPEVCLKAKEEERQGTDTYQAWIDDC--------------- 700 W ++G Y +GL D P E +I +C Sbjct: 839 AWAVEGWGMYRREGLRRADFPAAVKGESIEFTNQFSDVSEFISECVEEAPVSLRRKAERR 898 Query: 701 ----CDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKI 756 CD E + Y + ++ DR + + LK G+ + E + Sbjct: 899 NWRVCDWPEEWHTTVSEVYDVYVTWCQENRVADRNIMKKNGFSRQLKDYGY----RAEVV 954 Query: 757 EKEWKSKRIIKGLKLKPAFESVDDNSNIIDFKR 789 +K+ + R G KL N+ ++ ++ Sbjct: 955 KKDGFTSRTYAGFKLNS------PNARVLKLQK 981 >gi|228968960|ref|ZP_04129905.1| hypothetical protein bthur0004_57100 [Bacillus thuringiensis serovar sotto str. T04001] gi|228790735|gb|EEM38391.1| hypothetical protein bthur0004_57100 [Bacillus thuringiensis serovar sotto str. T04001] Length = 300 Score = 253 bits (646), Expect = 7e-65, Method: Composition-based stats. Identities = 79/315 (25%), Positives = 131/315 (41%), Gaps = 27/315 (8%) Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542 M+Y R +G +L G Q + + G G +GKST +N IK G + I + Sbjct: 1 MEYMQRLIGYSLTGDISEQIMMFLVGGGSNGKSTFINTIKDLLGEYGKQAKSDTFIKKK- 59 Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602 AN + RL+G+R V E+ E ++++ + +KQ+TGG+ + AR Y E Sbjct: 60 ---DTGANNDIARLVGARFVSAIESEEGEKLSESFVKQITGGEPVLARFL-RQEYFEFVP 115 Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFL 660 F F N + D+ WRR +IPF+ + RD +KL W + Sbjct: 116 EFKVFFTTNHKPVIGGLDEGIWRRVKLIPFNLNLPSHKRDKRLPEKLSL-EMPGILNWAI 174 Query: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEE----SHSLAK 716 +G + L P+V +A + + D ++D+ C + E E + L Sbjct: 175 EGCMKWQQGRLK--EPKVVAEATGKYKDDMDILAPFLDEVCYVDERENESITIEAKELYN 232 Query: 717 SYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL---KP 773 Y + N + + R+ L+ KGF K K++ + G+ L KP Sbjct: 233 VYERWC---FNSGERALGNRSFYRMLETKGFGKT-------KGSKNRTFLTGITLNERKP 282 Query: 774 AFESVDDNSNIIDFK 788 + V +N+ FK Sbjct: 283 VTKGVTENNKNGKFK 297 >gi|42761469|ref|NP_976264.1| primase [Acidianus ambivalens] gi|3059074|emb|CAA12526.1| primase [Acidianus ambivalens] Length = 909 Score = 252 bits (643), Expect = 2e-64, Method: Composition-based stats. Identities = 125/871 (14%), Positives = 243/871 (27%), Gaps = 146/871 (16%) Query: 9 QAKQAIHNGFKLIPLRLGDKRP--QRLGKWEEQLLSSEKIDKL-----PACGFGFVCGVG 61 AK I NG + P+ K+P + ++ + L+ E+ K + G Sbjct: 8 YAKWFIKNGAAIFPIDPNTKKPVVKEWQRYSHEPLTDEEKQKFLEMISQGYNYAVPGGQ- 66 Query: 62 EQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIP--------FRMNKEGI 113 + L D + K+ A ++T + + + I + N + Sbjct: 67 -KNLVILDFEDKELLKAWIGEETLNKICSKTLCVTTPHGGLHIYLIVDEVPPHKFNPVFV 125 Query: 114 KKKKTTESTQGHLD-ILGCGQYFVAYNIH----PKTKKEYTWTTPPHRFKVEDTPLLSEE 168 K K Q +LG G K+YT P P ++ Sbjct: 126 KDGKGVADLQSFDSYVLGPGSCINHKYCSSEKCKWKGKDYTTCYIPVNNTGIGRP---DK 182 Query: 169 DVEYLFKFFQEITVPLVKDKKSIIPSK-TWTNNNNRQYTNREITAFLSCFGEEFYNGSHD 227 ++ K+ + L + + + +T +++ + Sbjct: 183 GLKNFLKWLADKGKKLGIELSGSARAWVEGKQEKSDSHTEKDLEKLKEEMAKYNRFKGKT 242 Query: 228 ---EWIPVVMAVHHE-----TRGSSKGKEIARRWSKQGSTY------------------- 260 V ++ + + A + QG Y Sbjct: 243 VDAIRSEVCQSIKKSLDNAKSDKAKAMLNTAFQVVCQGKKYSDLGIDRSRGDWHVLKTLL 302 Query: 261 ----------------DEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLA 304 D + F KWD + + + F ++ + K K L Sbjct: 303 SHGVTDIDMLQQLIPNDSKVFAPKWDKYFVHTLMKAWNEVKPFLTVLKNAKKKKAK-ELK 361 Query: 305 SRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKE 364 F++A ++ + Y + +K N I + I + + Sbjct: 362 EEFAEALSQYIIRKYH---------IITFIQKHGNGESIVGIFRWSKKKGIYEPVDKTLK 412 Query: 365 DVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDS 424 + ++ + + ++ + K+ + ++T D+ Sbjct: 413 KI--------IRHEIMRIKELFPKSEEEGKVTFYEIKSGLVKLVYDEIMDLTLTEYDDDN 464 Query: 425 SSRFLGEQDGILDLETG---------------------QKVKPTKELYITKSTGTPFV-- 461 + ++ L+ T + + +T PF Sbjct: 465 IPLRIAFENYTLEWSTDKKENIFKLIPANERTEEHYSFHYIPHKIRDEVFNNTPLPFQVS 524 Query: 462 -----EGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKST 516 + LD + + + +G L K + + G SGKST Sbjct: 525 ELEDLARKLCPRSLDTFKQWAGDKWI--TLFEIIGYTLYPATKIKLAFMLLGPRDSGKST 582 Query: 517 LMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAA 576 + L+K G ++ + + L + +ET E + Sbjct: 583 FLQLLKKILGKHNTVSIRV------KELFDSNNRFVMGYLFHKLANLTAETKEYTINDID 636 Query: 577 KIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRN-PDDAWWRRYIVIPFDKP 635 + K +TGGD +T+ + + N I NK V + D A+WRR+++I F Sbjct: 637 RFKTLTGGDQVTSDVKF-NGPITFTPYAKIIIASNKLPNVSDKNDMAFWRRWLIIEFPNT 695 Query: 636 IANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDI--PEVCLKAKEEERQGTDTY 693 N D F Q + + I G PE D+ Sbjct: 696 FPNDDNWFRQTFTEEEIEGILTVSILAFARVIINGKFDYQQTPEEVRGL---WLNNIDSV 752 Query: 694 QAWIDDCCDIG--------ENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK 745 ++I + G +LW L Y EY +S RT L K Sbjct: 753 WSFIKTYVEKGIITLDPRNADLWVPRKELYNLYKEYCLDNGFPG---VSLRTFANKL-NK 808 Query: 746 GFIGGIKREKIEKEW----KSKRIIKGLKLK 772 F ++ K+ KR G+ + Sbjct: 809 YFGITSMKKNFGKKPDGTDDRKRCFVGITIN 839 >gi|254438338|ref|ZP_05051832.1| D5 N-terminal domain family protein, putative [Octadecabacter antarcticus 307] gi|198253784|gb|EDY78098.1| D5 N-terminal domain family protein, putative [Octadecabacter antarcticus 307] Length = 508 Score = 252 bits (642), Expect = 2e-64, Method: Composition-based stats. Identities = 81/416 (19%), Positives = 162/416 (38%), Gaps = 24/416 (5%) Query: 368 DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSR 427 E E + + + + ++ ++ ++ + D D++ Sbjct: 77 AKLEAVEARFRQGEIEKKDRLAAKKLYANLRSTTRRTAVWQTAVVNMDAAEVDDFDANPE 136 Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGT-PFVEGEPSQEFLDLVSGYF-ESEEVMDY 485 LG G++DL TG+ T +T+ST P G + +L+ +S F +E +++ Sbjct: 137 LLGTPGGVIDLRTGEVRSATVGDKVTQSTDVAPAQAGASASRWLEFLSQVFEGDKETLEF 196 Query: 486 FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545 R VG AL+G AQ+F + G G +GKS L +++ G+ + + Sbjct: 197 IERLVGSALVGNVSAQKFFVLYGRGSNGKSVLRDVVSCLVGSYAGTASAKVFM----QSH 252 Query: 546 AGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFT 605 + + + L G R+V+ SE N A +K++TGG+ MT R + N +S T Sbjct: 253 SDRHPTEIASLAGKRVVMASEVPAGRSWNDALLKELTGGEKMTTRWVHQNEFS-FTPRGT 311 Query: 606 PFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGV 663 N +A RR ++I F + +D + L + +W + G Sbjct: 312 LIFTANTLPSFTGAQEAMLRRIVIIEFKRNFTEDEQDPNLVADLISTEGSAILRWAIDGA 371 Query: 664 KAYISKG---LDVDIPEVCLKAKEEERQGTDTYQAWIDDC-------CDIGENLWEESHS 713 + +++ G + IP+ A + D ++ D D + Sbjct: 372 RKFLADGGGVRGLRIPQSITDATRTYFEEEDIVLQFLIDAQGSAATSIDWSPGAFVSCSQ 431 Query: 714 LAKSYSEYREQELNYDRKRISTRTVTLNLKQK--GFIGGIKREKIEKEWKSKRIIK 767 L + + E + + K S RT++ +++ + R K + ++ +R + Sbjct: 432 LFDEFRRWAESKGH---KSWSVRTLSKVIRENAERYELSDVRTKAARGFRVERRLT 484 >gi|303247554|ref|ZP_07333825.1| phage/plasmid primase, P4 family [Desulfovibrio fructosovorans JJ] gi|302491034|gb|EFL50928.1| phage/plasmid primase, P4 family [Desulfovibrio fructosovorans JJ] Length = 524 Score = 252 bits (642), Expect = 3e-64, Method: Composition-based stats. Identities = 79/430 (18%), Positives = 154/430 (35%), Gaps = 25/430 (5%) Query: 357 NFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFS 416 ++ ++ + E + S + + + R N + ++ + Sbjct: 109 QQREALAQEAYRTDNSKETRGQAEASRKKYVSALKRLSNKHSLDNITALMRT--GRDSLA 166 Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVE-GEPSQEFLDLVSG 475 + D + L + +DL TGQ + TK T + + ++ Sbjct: 167 RDNADFDRNPWALHCLNCRIDLRTGQDREGQLGDMSTKYCQTVWRGLQYEHPAWNAYMAS 226 Query: 476 YFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535 ++ +Y VG A+ G + + SGK+ L+ K FGN + A Sbjct: 227 LLP-ADMAEYLQHFVGYAITGIQRKAFALFYSKFSDSGKTLLLETFKSVFGNYAGMLPAA 285 Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595 + + G P L L G R+ +SE+ + D N A++K ++GGD + AR + Sbjct: 286 LLMEDKKGKGLG-PTPELAELQGLRLAFLSESGKADSFNVARLKWLSGGDTLVARGLFAK 344 Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR---------DASFAQK 646 T F+ N + +DA W R V F + + + Sbjct: 345 P-VSFEPMHTLFLASNHLARIGIDEDALWGRIHVFKFPYAFKDNPAKPHERPINPDLKDQ 403 Query: 647 LETKY-TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE 705 L + W ++G A+ G + P +A E R D ++++ C IG+ Sbjct: 404 LRQEEVKSAILAWAVRGCLAWQKNGQKFNPPLSSREALETYRLNEDYVESFVRARCLIGK 463 Query: 706 NLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRI 765 E++ L ++YS++ +E + K + R + + + + Sbjct: 464 EHREQAKPLHEAYSQWHVEEFGSNSKPLGRRKFCEAM---------AGKFEKDDDGRYHY 514 Query: 766 IKGLKLKPAF 775 GL+LK +F Sbjct: 515 YLGLQLKSSF 524 >gi|15789518|ref|NP_279342.1| hypothetical protein VNG0215C [Halobacterium sp. NRC-1] gi|10579860|gb|AAG18822.1| conserved hypothetical protein [Halobacterium sp. NRC-1] Length = 857 Score = 251 bits (640), Expect = 4e-64, Method: Composition-based stats. Identities = 130/831 (15%), Positives = 272/831 (32%), Gaps = 112/831 (13%) Query: 31 QRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQ----PLYA-FDIDSKDEKTANTF-KDT 84 +W + E + + G G+V LY D+D +K+ KD Sbjct: 52 SDPEEWHTFNDAVEAATERDSWGIGYVMASENDDYPRGLYGCLDLDGCLKKSNQEKPKDW 111 Query: 85 FEIL-----HGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYN 139 L G + G I IPF + +D+L F A+ Sbjct: 112 LPSLEKFIEDGAYMEYSGSGEGIHIPFVGYEPPEWWADCQLGEHEGVDVLTNK--FCAF- 168 Query: 140 IHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTN 199 T + + + + + ++LF+ +QEI S S + Sbjct: 169 ----TGNQLSVSGDS---------VSGADPTQFLFEAYQEINGEAPSLSSSTGKSGDY-- 213 Query: 200 NNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGST 259 + + +I LS + +DEW+ + AVH S GK + +WSK GS Sbjct: 214 DGDEWLDKSDIEDALSHVNP---DCGYDEWLKLGFAVHD-WDSGSTGKRLFEQWSKGGSK 269 Query: 260 YD---EENFNYKWDTFD-------------FEEIGDTAKKRSTFTSLFYHHGKLIP---- 299 +D E N WD+ ++ G T RS T +G P Sbjct: 270 WDNQAERNIQDIWDSASEGQGVTVGTLIHYAKDGGWTVPTRSNPTGQSQENGHTKPLVEA 329 Query: 300 ------------------KGLLASRFSDAYNKA--MFSIYKKGHFLYTADTKAWYKKDKN 339 +G AS D + K+ + ++ + + Sbjct: 330 IDSSWFDLDSKTVTVQSVEGYTASELVDVFQKSGNILEACGHEAISAIGESDGGGEFLDD 389 Query: 340 NVYIWSLTLDKITA-SIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFW-FNTDYRRQNVE 397 + W++ + + + L + + L+E P W + D + Sbjct: 390 SGNGWTVEEGRKNPYAHLEPLSNQEIKNTALAELPTHRVAYLPKREIWLWCDDGVWKPNG 449 Query: 398 ENSKAKSTAQSLEAGSIFSITSDLLDS---------------SSRFLGEQDGILDLETGQ 442 + + + L I +++D + Q+G++DL+ G+ Sbjct: 450 DGWVRQWLDEYLGPYYSGHIRREVMDQLQARSQVEEQRFGGGPPGQIAAQNGLIDLDAGE 509 Query: 443 -KVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGG-NKA 500 + +I + T + +++ + + E+ + + +G L K Sbjct: 510 IMREIQPSDHIRWTLATEYDPEADCRKWREFLGEVVEASD-IPLLQEYIGYCLRHWDVKR 568 Query: 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSR 560 ++ + + G +GKS +++I+ FG + ++ + G RL+ + Sbjct: 569 KKALMLLGPTDAGKSVFVDVIEALFGGEDSAATSSTSVQYLANERWGP-----ARLVNTA 623 Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620 + S+ + N K+K++ GD + A + + N+ D Sbjct: 624 LNTRSDLGKGSIENTGKVKELIAGDSLDAERK-RKPVFQFKPTAKHIFAANRAPNRSVDD 682 Query: 621 DAWWRRYIVIPFDKPIANRD--ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEV 678 +A+W R++ + F + I + ++L + W ++G + +G + P + Sbjct: 683 EAFWNRWLTVVFPQAIPRSEQVDDLDEQL-LEELPGIFNWAIEGYQRLEEQGHFTNQP-L 740 Query: 679 CLKAKEEERQGTDTYQAWIDDCCDIGENLWEES---HSLAKSYSEYREQELNYDRKRIST 735 + +E+ + ++ W D C + + + +Y Y + + Sbjct: 741 PYQNREKWERYGNSIAQWFDRCTEEQPDGFTPKESTDDALGAYDSYVAYARQNGLEVETD 800 Query: 736 RTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL---KPAFESVDDNSN 783 T LK++ G+ + + E G L P +++N Sbjct: 801 SKFTSELKRRD---GVSKSRRRIEGNRTYGYSGFVLTDDAPGGSDQQEDTN 848 >gi|315122923|ref|YP_004063412.1| P4 family phage/plasmid primase [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496325|gb|ADR52924.1| P4 family phage/plasmid primase [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 356 Score = 250 bits (639), Expect = 6e-64, Method: Composition-based stats. Identities = 241/356 (67%), Positives = 289/356 (81%) Query: 108 MNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSE 167 M K GIKKK+T +S QGHLDILG GQYFVAYNIHPKTK+EYTWTTPP FK E+ PLLSE Sbjct: 1 MAKAGIKKKQTPKSQQGHLDILGGGQYFVAYNIHPKTKEEYTWTTPPDAFKAEELPLLSE 60 Query: 168 EDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHD 227 EDVE+LF+FF+E T P+VK KK I K NR+YTNREITAFLSCFGEEF NG+HD Sbjct: 61 EDVEHLFEFFKESTTPVVKAKKEIKSPKEGNTKGNRRYTNREITAFLSCFGEEFTNGTHD 120 Query: 228 EWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTF 287 EWIPVVMA+HHET+GS +GKE+ARRWSK+GS+YDEENFNYKW TFD EE GD+ KKRSTF Sbjct: 121 EWIPVVMAIHHETQGSHEGKELARRWSKRGSSYDEENFNYKWSTFDCEEEGDSEKKRSTF 180 Query: 288 TSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLT 347 S+FYHH KLIP G+L RFSDAYNKAMFS++K G+FLY +DTKAWYKKDK N YIW +T Sbjct: 181 ASIFYHHRKLIPDGILEERFSDAYNKAMFSVFKSGYFLYASDTKAWYKKDKTNRYIWRIT 240 Query: 348 LDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQ 407 DKI IM FL+SMK+D FDL EE E+ + K+PR + Y ++N E S++KSTA Sbjct: 241 DDKIAGYIMEFLISMKKDAFDLCEEIENKDGTKKNPRALYLKAYAKRNACEQSRSKSTAN 300 Query: 408 SLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEG 463 ++EA S F I+S++ D++ R++GE+DGILD+ETGQ++ P +ELYITKSTGTPFVEG Sbjct: 301 AIEAKSPFHISSEIFDANLRYIGERDGILDMETGQQITPKEELYITKSTGTPFVEG 356 >gi|218900594|ref|YP_002449005.1| phage/plasmid primase, P4 family, putative [Bacillus cereus G9842] gi|218542423|gb|ACK94817.1| phage/plasmid primase, P4 family, putative [Bacillus cereus G9842] Length = 531 Score = 250 bits (637), Expect = 8e-64, Method: Composition-based stats. Identities = 80/539 (14%), Positives = 170/539 (31%), Gaps = 29/539 (5%) Query: 238 HETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKL 297 H K + + S + +++ + + L + + Sbjct: 14 HILNCHGSLKSLTENINDLSSISQLAAAARQVKNISLKKLLELLLSKKVVDELDFSLIQT 73 Query: 298 IPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKIT-ASIM 356 I + S+ ++ S + F+Y + K Y+ + N + LT K+ Sbjct: 74 INSDHVKFLTSELHHAVQVSKAIQTGFIYE-EKKIKYRFNSNLFADYFLTRVKMVCDENG 132 Query: 357 NFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFS 416 K+ VF L + E +R E ++ + + S Sbjct: 133 LLYAYSKQGVFKLLTDTEMGRLVRILMNEGLEHSWRSS--HEKEAIQAIKRECFSKS--- 187 Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY 476 LD ++ Q+G+ L+ G K T + F + Sbjct: 188 ----QLDCMREYVNLQNGMYSLKAGSLEKHHPNFLSTVQIPIKYDGEADCPTFKQFIKDI 243 Query: 477 F-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535 +E+ + +G L + ++ + G G +GKS L +I G Q V + Sbjct: 244 TCNDKELENVIQELMGYLLSPEIRCEKAFYFFGRGANGKSVLARIIAILVGEQNVSSIPL 303 Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETN-ENDEINAAKIKQMTGGDCMTARLNYG 594 S + L ++G + I E ++N K + GD M L Y Sbjct: 304 SHFSSDFG---------LEGIIGKTVNIAPENEMRGSQLNTEAFKAIVSGDGMNINLKYR 354 Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDASFAQKLETKYT 652 + + + + N+ + + ++RR +IPF + + ++ +L T+ Sbjct: 355 PSITNYKSKCRLVFLGNELPDTNDLTNGYFRRMCIIPFKRTFSESEQNRDLLMEL-TEEL 413 Query: 653 LEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESH 712 W ++G+K V + + R + + + + + Sbjct: 414 PGIFNWAIEGLKRLRENNYVFSCSSVIKEELRKYRLSQNPVLNFFESIVVYDASSKLKRS 473 Query: 713 SLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771 L + + EQ + + + +L I + +EK + +G+KL Sbjct: 474 ELYNHFKLWCEQN--EIDRIRTRQRFYKDLMN--VIDSKELSIVEKRIQGHEYFEGIKL 528 >gi|307320179|ref|ZP_07599599.1| phage/plasmid primase, P4 family [Sinorhizobium meliloti AK83] gi|306894225|gb|EFN24991.1| phage/plasmid primase, P4 family [Sinorhizobium meliloti AK83] Length = 602 Score = 250 bits (637), Expect = 8e-64, Method: Composition-based stats. Identities = 84/591 (14%), Positives = 179/591 (30%), Gaps = 106/591 (17%) Query: 262 EENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASR-----------FSDA 310 E+ K + F + + T + L Sbjct: 11 PEDVAQKLEEFSAQRE---PENPETPLGPSDEPPAHLSADLEPDEAAVEYCAEFDHSDTD 67 Query: 311 YNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIM-------------- 356 K + + + + + +W+ + ++ Sbjct: 68 NGKRLITHFGTDFIVLAQEKAKQPAFA-----VWTGSHWDVSNGGPKATAIAQRLGDRIA 122 Query: 357 ------------NFLVSMKEDVFDLSEEPEDNNKNS----KSPRFWFNTDYRRQNVE--- 397 L+ + EE + + + ++ ++ Sbjct: 123 REVAYIKPNAFEQMLIDKAIEARKKPEEDRNPTEKRLAIAAEKAEEAHGKRVKRRLDHAV 182 Query: 398 -ENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVK----------- 445 + AK A A + + +++ + Q+ L + + Sbjct: 183 TSKNVAKMQAALSCAAPHIMRSPNDFNANRMMVAVQNATLVFHRKTERRKNPRHKSVSET 242 Query: 446 --------------------PTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDY 485 + IT + +++ + ++V Sbjct: 243 PDAPEYIDACVDSSLEVIPGHRRRDMITHIVPVRYRPEAKCSKWMAFIESKLPDKDVRRL 302 Query: 486 FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545 G+ LLG G G +GKS M + G+ V S I + Sbjct: 303 VQVSSGLGLLGITVQYL-FFHYGDGANGKSVYMETLCRLLGDVAVTLPATSLIGE--GGS 359 Query: 546 AGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFT 605 +G A+P L RL G R++ + E E +++ +K++TGG+ +TAR + Y++ F Sbjct: 360 SGSASPDLARLHGRRLLRVKELPEGEDLRENLVKELTGGETITARDLFS-GYTDFLPIFI 418 Query: 606 PFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKL---ETKYTLEAKKWFLKG 662 + N + + DD WRR VI + IA D +++ W ++G Sbjct: 419 AIMSGNGYPRITGTDDGIWRRMAVIHWPNKIAKEDRREFEEIVSSFEPEHPGILNWLIEG 478 Query: 663 VKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLW-EESHSLAKSYSEY 721 ++ +GL IPE KA +E R D ++ C + N + L ++Y Sbjct: 479 AHIFLREGL--VIPEAVEKATQEYRDDMDRTAGFVGRCIERDANADPLQGKDLYQAY--- 533 Query: 722 REQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLK 772 + ++ K ++ + +K ++ + + G++LK Sbjct: 534 CDDTVDQGGKPMNVTAFGRVMSKK---------FRKERTATGVVYFGVRLK 575 >gi|94311594|ref|YP_584804.1| Phage/plasmid primase P4-like protein [Cupriavidus metallidurans CH34] gi|93355446|gb|ABF09535.1| DNA primase activity [Cupriavidus metallidurans CH34] Length = 632 Score = 249 bits (635), Expect = 2e-63, Method: Composition-based stats. Identities = 62/396 (15%), Positives = 137/396 (34%), Gaps = 25/396 (6%) Query: 359 LVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENS-KAKSTAQSLEAGSIFSI 417 LV +++ ++ + N + N D + N S +L+A + Sbjct: 218 LVFVRDVFYEYRDGYWQEVDNWSLKQKLTNDDSPYAALLPNPGAVNSLIDALKARTSLVK 277 Query: 418 TSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF 477 D L Q+ +LD+ TG ++ + + + E + + + F Sbjct: 278 FP---DPKPLTLCLQNAVLDIATGSQMPHAPDYWHRNLLDIQYHEDDVCPLWQRFLDETF 334 Query: 478 -ESE---EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533 E + +G L+ +AQ + + G G +GKS ++ +++ G + Sbjct: 335 AGDADGSEKKLFLQEFMGYLLVPSTEAQMMLWMIGSGANGKSVVIEVMQSLLGADNHSSV 394 Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593 + Q+ L G E + + I+ A IK + GGD + A Sbjct: 395 PLDSLGQD---------FKKAVLQGKLANFCPEISGSRRIDEATIKSIVGGDEIYAEKKG 445 Query: 594 GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP--IANRDASFAQKLETKY 651 + +S A N V + ++RR ++ F++ + D +KL Sbjct: 446 KDGFS-FRAYARIVAAGNALPDVGDTSHGFFRRLTILRFNRQLSVEEMDRELPEKL-KNE 503 Query: 652 TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEES 711 W L G+K + + D+P + ++ + ++ +C + Sbjct: 504 LSGILAWALAGLKRFREQKRFTDVP-SSRAFVSSYKLQSNPVEVFLTECTKVVAGKKTLK 562 Query: 712 HSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGF 747 + SY + ++ + + ++ L + G+ Sbjct: 563 SDVYASYKAFCQEGGH---QPLANNKFGAALSELGY 595 >gi|320352359|ref|YP_004193698.1| phage/plasmid primase, P4 family [Desulfobulbus propionicus DSM 2032] gi|320120861|gb|ADW16407.1| phage/plasmid primase, P4 family [Desulfobulbus propionicus DSM 2032] Length = 538 Score = 248 bits (633), Expect = 3e-63, Method: Composition-based stats. Identities = 84/489 (17%), Positives = 168/489 (34%), Gaps = 44/489 (8%) Query: 306 RFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITA---------SIM 356 ++ + +++ KG FL+ K W+ + + ++ Sbjct: 37 DANERGDGVLYATLHKGRFLFNTTPK------DGAWLRWTGIVWEPDDFKDSFKAVEAVA 90 Query: 357 NFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEE----NSKAKSTAQSLEAG 412 D+F +E+ E+ ++ + R+ V+ N K+ + Sbjct: 91 LQYEQRALDLFAEAEKLEEKGNKEQADKVLDLAKRYRKRVDRLRTENGAKKALVWAPVVE 150 Query: 413 SIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDL 472 + LD L +G++DL G + +TK+ +++ ++ Sbjct: 151 KSMACRELELDRQPMRLPCGNGVIDLTAGVLLDGDPADLMTKAIDVNYLKDADYTDWHKF 210 Query: 473 VSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532 V SE V ++ R G AL G + Q G G +GK L + I G Y + Sbjct: 211 VVEVCGSEAVANFLKRFFGYALTGHSYEQYIAVFIGGGRNGKGVLFSCIGSVLGPYYHVI 270 Query: 533 AEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLN 592 + + Q P A+ L G R+V+ E+ I+A ++K +TG D + R N Sbjct: 271 SPSMITEQRFDPSPNAASEHKYALHGKRLVVAGESKRGQRIDAGQVKGLTGDDKVECRPN 330 Query: 593 YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFD-----------KPIA---- 637 +G + + T + N + + +R + I F K Sbjct: 331 FGKMFV-FDPTHTLCLHTNHMPVGMGSEFSLVQRLLKIDFPWAYVDDPEAEAKKFPPMAD 389 Query: 638 ---NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQ 694 +D +L KW ++G + +GLD P+ L + E D Sbjct: 390 RFRKKDKHLKDRLMQN-REGILKWLVEGCLEWQQRGLDP--PQEILDSAAELANAEDYLT 446 Query: 695 AWIDDCCDI---GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGI 751 +++D + L + + + +K + RT+ ++++G+ Sbjct: 447 EFLNDSLLPSPDDPDREIGFQGLYQCFLWWWGLNQGDPKKAPANRTLAKAMRERGYTLEK 506 Query: 752 KREKIEKEW 760 + KI Sbjct: 507 RGGKIYVRG 515 >gi|189499201|ref|YP_001958671.1| P4 family phage/plasmid primase [Chlorobium phaeobacteroides BS1] gi|189494642|gb|ACE03190.1| phage/plasmid primase, P4 family [Chlorobium phaeobacteroides BS1] Length = 486 Score = 248 bits (632), Expect = 3e-63, Method: Composition-based stats. Identities = 73/471 (15%), Positives = 161/471 (34%), Gaps = 42/471 (8%) Query: 288 TSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNN-VYIWSL 346 L ++ P IY + A+ K W +N VY+++ Sbjct: 35 EILEQLLEQIEPVNFTEFTGGGEVRAVHHRIYAVKSVVRLAERKNWGLCKRNGAVYVFTG 94 Query: 347 TLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTA 406 + + +D+ + PR+ + R + + +++ Sbjct: 95 SHWRRVE---------DDDMEAFLGTAA---LRTGVPRYRADDYKFRAELLKQFHSEAHL 142 Query: 407 QSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETG--QKVKPTKELYITKSTGTPFVEGE 464 E D+ + Q+G ++ Q + + ++T E Sbjct: 143 TQPEP-----------DAGRTLINLQNGTFEITQHGQQLREFRRADFLTHVLPFECREDA 191 Query: 465 PSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524 + F + + VG + G K ++ + + G G +GKS +++ Sbjct: 192 KAPLFRSFIERVLPDPDSQRVLAEFVGYVFIRGLKLEKALMLYGGGANGKSVFFDILLAL 251 Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGG 584 G+ + + + +R L + SE N ++ A+ KQ+ G Sbjct: 252 LGSDNASSYSLASLTDSRN------TYYRAMLADKLVNYASEI--NSKVEASIFKQLVSG 303 Query: 585 DCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DAS 642 + + ARL YG + N+ +A++RR+++IPF I R D Sbjct: 304 EPVEARLPYGKPFI-LKEYAKLIFNANELPRDVEHTNAYFRRFLIIPFTVTIPEREQDKE 362 Query: 643 FAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDC-C 701 A K+ W L+G++ + + ++ + A ++ ++ +D+ Q ++D Sbjct: 363 LAGKIIASELPGVFNWALEGLRRLLQQK-NLSNCDAARHAVDQYKRESDSVQMFVDGRAL 421 Query: 702 DIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIK 752 + +E L K Y + + + ++ R + L+ GF + Sbjct: 422 EPSGVGFETLGDLYKDYKSFCADDG---YRGLNKRNFSKRLEACGFEKVKR 469 >gi|15078896|ref|NP_149647.1| 184R [Invertebrate iridescent virus 6] gi|82013411|sp|O55768|VF184_IIV6 RecName: Full=Putative helicase 184R gi|2738452|gb|AAB94479.1| 184R [Invertebrate iridescent virus 6] Length = 971 Score = 246 bits (628), Expect = 9e-63, Method: Composition-based stats. Identities = 117/700 (16%), Positives = 222/700 (31%), Gaps = 108/700 (15%) Query: 142 PKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNN 201 P T + P ++S + FK + + K ++ Sbjct: 247 PITDTNVEFELPMLLSINPKPSIISNKLF--YFKEAPVKLCDALLPVVNNNREKEGRMSS 304 Query: 202 NRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHET---RGSSKGKEIARRWSKQGS 258 +++T+FLS +++W V + + + + E + +S Q + Sbjct: 305 REIEKMKKLTSFLSVS----RADDYNQWWTVGITLFNIGTGRDCEEEALEAWKMFSSQST 360 Query: 259 TYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYN------ 312 YDE + +W + + T SL + P L ++ N Sbjct: 361 KYDESRCDLEWAEM---KKKNRPLNARTMGSLIFMAKSDNPVALEKYLLAEQMNIENWTS 417 Query: 313 ---------KAMFSIYKKGHF--LYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLV- 360 K + ++ + + Y + ++ T+ S+ + Sbjct: 418 HQNLDVESIKKLKVPVFDTEIAEMFVSQHEDEYLNGNLGWFKFNGTIWSSLESVGRHMRP 477 Query: 361 -------SMKEDVFDLSEEPEDNNKNSKSPR----------------------------- 384 S + L + + + Sbjct: 478 SLVSLSRSYLNLIPALKYITKTLQNDDEGYEPSDSGFGFDDDDSASTSGGKTTAEITKLV 537 Query: 385 --FWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQ 442 + + + N S + +E +D +D + + + +G+ DL Sbjct: 538 NSKIKLINDLAKKCQNNGPQMSLMKVIEDMIGIDNLNDKMDQNKQLIAFTNGVYDLSLFT 597 Query: 443 KVKPTKELYITKSTGTPFV-----EGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGG 497 + E YIT+ P+ E + L+ F EE+ +YF +GG Sbjct: 598 FRQGLPEDYITRQMTIPYDITLTMENPKVIKMLNFFKKIFPDEELFEYFMLENCEMYIGG 657 Query: 498 NKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRL- 556 N+ + G G +GKS +I+ FG V + ++ PP+AG P L R Sbjct: 658 NRDKILQIWTGEGDNGKSVTNKIIENKFGKLSVKFPKG--MVTGDPPKAGACFPELTRAQ 715 Query: 557 MGSRIVIISETNENDEINAAKIKQMTGG-DCMTAR--LNYGNTYSESPASFTPFIVPNKH 613 G R ++ E ++ +NA IK +TGG D + AR G + F + N Sbjct: 716 RGVRWAVVDEFAPDETVNAGVIKNLTGGIDNLYARDIQQKGKDVIDIDPFFKLIFICNTI 775 Query: 614 LFVRNPDDAWWRRYIVIPFDKPIAN-----------------RDASFAQKLETKYTLEAK 656 +RNPD+A W R VIPF+ + +D SF +K + EA Sbjct: 776 PNIRNPDNATWNRIRVIPFESTFKDSIDDISLEEQKRDKIFLKDTSFCEKETIRELGEAF 835 Query: 657 KWFL--------KGVKAYISKG--LDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDI--G 704 W+L + + G + IP +A E + + + +D +I Sbjct: 836 AWYLIQVFIKKEQARRDARLNGKSFKIKIPAKVNEATELYKAQGNAIADYFNDKFEISDD 895 Query: 705 ENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQ 744 +N + + + Q + I + Q Sbjct: 896 DNDTINIKLYYQDFLLWFSQTHSNKNVNIDKKKFMKLFVQ 935 >gi|163759247|ref|ZP_02166333.1| hypothetical protein HPDFL43_05765 [Hoeflea phototrophica DFL-43] gi|162283651|gb|EDQ33936.1| hypothetical protein HPDFL43_05765 [Hoeflea phototrophica DFL-43] Length = 607 Score = 245 bits (626), Expect = 2e-62, Method: Composition-based stats. Identities = 78/445 (17%), Positives = 146/445 (32%), Gaps = 44/445 (9%) Query: 352 TASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEA 411 + FL ED+ + + + + V + AK A A Sbjct: 158 LDAGGQFLDKPDEDLGKAETKAKRMAEEAAKTWGKRRAARASFAVGSKNLAKMNAMLSCA 217 Query: 412 GSIFSITSDLLDSSSRFLGEQDGILDLET----------------------GQKVKPTKE 449 D ++ + + + ++E Sbjct: 218 APHIMRDPDDFNADRYSFATLNHTIKFGRRTVVVPAQSDAQEDGEEIRAVVDVRKGHSRE 277 Query: 450 LYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGV 509 IT+ F ++ ++ V + L+G Q+ G Sbjct: 278 DLITQLVPVEFDPDAACPKWEAFLTQMLPDPLVRKLVQIAFALGLVG-VTVQKLFFHYGS 336 Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569 G +GKS M +I G+ V S I ++ G A+P + RL G R + + E Sbjct: 337 GANGKSVAMEVICRLLGSASVTLPATSFIGESN--TGGSASPDIARLYGRRFLRVKELPV 394 Query: 570 NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIV 629 +++ +K++TGG+ +TAR + Y + FTP + N + + D+ WRR V Sbjct: 395 GEDLKENLVKEVTGGEAITARDLH-QGYFDFDPLFTPHMSGNGYPRITGMDNGIWRRMCV 453 Query: 630 IPFDKPIANRDASFAQK---LETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEE 686 + + ++ + W + G++ ++ +GL IP+ +A ++ Sbjct: 454 VHWPVQLSADQQRDFEDVMGEFETEFPGILNWLIDGMRMFLEEGL--VIPDAVARATQDY 511 Query: 687 RQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746 R D A+ C I + +Y Y + K IS L +K+K Sbjct: 512 RDEMDPTAAFCAACVRIAPGERLTAKDFYHAYVNYTVDQGG---KPISLTRFGLIMKRK- 567 Query: 747 FIGGIKREKIEKEWKSKRIIKGLKL 771 E+E G+ L Sbjct: 568 ---------FEREEGRTNHYLGVAL 583 >gi|126727691|ref|ZP_01743523.1| hypothetical protein RB2150_15970 [Rhodobacterales bacterium HTCC2150] gi|126703107|gb|EBA02208.1| hypothetical protein RB2150_15970 [Rhodobacterales bacterium HTCC2150] Length = 598 Score = 245 bits (625), Expect = 2e-62, Method: Composition-based stats. Identities = 67/356 (18%), Positives = 126/356 (35%), Gaps = 31/356 (8%) Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEE--- 481 + +G +L +E Y T + + F + F +E Sbjct: 266 DPETVNCLNG--ELTLDGLRPHCREHYRTTQIPVEYDPEAKAPMFEAFLDQVFREDEDRA 323 Query: 482 -VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540 + +G +L+ + + F+ + G G +GKS L+ +++ G V + S+ Sbjct: 324 DKIRTVLELMGYSLMSHARHELFLMLIGPGANGKSVLLGVLEGLLGAANVAGVQPSNFDN 383 Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600 L I++E + + I A++K +T G+ T + N + Sbjct: 384 ---------RFQRAHLHQKLANIVTELRQGEVIADAELKAITSGEPATVEHKFQNPFV-M 433 Query: 601 PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDASFAQKLETKYTLEAKKW 658 T + N R+ DA +RR ++ F++ A +D KL Sbjct: 434 RPFATCWFGTNHMPHTRDFSDALFRRATILKFNRTFAEHEQDPMLKIKL-LNELPGILNL 492 Query: 659 FLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSY 718 L G P+ ++AK+E + D ++DD CD N L K Y Sbjct: 493 ALDAYIVTTFAG--FTAPQSSIEAKQEWKLEADQVAQFVDDACDADPNGEVPIGHLYKFY 550 Query: 719 SEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPA 774 ++ + + ++ + + L GF G + R + GL+LKP Sbjct: 551 GQWADDVG--ISRTVTMKILRDRLTTLGFGG--------RRTGKARFVTGLRLKPG 596 >gi|124516082|gb|EAY57591.1| Phage/plasmid primase P4 [Leptospirillum rubarum] Length = 730 Score = 245 bits (625), Expect = 2e-62, Method: Composition-based stats. Identities = 73/434 (16%), Positives = 152/434 (35%), Gaps = 32/434 (7%) Query: 346 LTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKST 405 + + K F +E + + R +++ + Sbjct: 318 GVAEALDDGSNLIFAQSKFWAFSETEGIWRESPDESVKRAIQIVCRENGLPVKDNFIRGA 377 Query: 406 AQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETG--QKVKPTKELYITKSTGTPFVEG 463 S +A + D +D S +G +G+L G +E Y + Sbjct: 378 FNSAKARFFRDVQFDQIDKRS--IGAANGVLRYIDGGWSLTPYRREDYRRIRLPVTYDAE 435 Query: 464 EPSQEFLDLVSGYF---ESEEVMDY-FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMN 519 F +S F ++ +G++L + ++ + + G GG+GKS L+ Sbjct: 436 AKCPRFEQFLSEVFDGSPDKKERALSVIEFLGLSLTATTEYEKALLLVGKGGNGKSVLLR 495 Query: 520 LIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIK 579 +++ G + + + + L G + I+SE +E E+ A+IK Sbjct: 496 VLESLIGARNRSSVQLKQLEN---------RFQRAHLDGKLVNIMSELSEGGEVPDAEIK 546 Query: 580 QMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN- 638 + G+ +TA + E +I N VR+ D +RR+I++ F + Sbjct: 547 SIISGEPITAEHKLKPPF-EFFPVCKLWIATNHMPSVRDLSDGLFRRFIILNFPNRFDDK 605 Query: 639 --RDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAW 696 RD ++KL + LK + +G + P L+A + ++ +D + Sbjct: 606 PSRDTKLSEKL-AAEASGILNYCLKALAGVYERG-ALTEPTSSLEAVQGWKRDSDQTSQF 663 Query: 697 IDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKI 756 ++D + S Y E+ ++ ++ + ++ T L G Sbjct: 664 LEDEMILEPGASISSSEAYHRYVEWAKEVG--IKRTLGRKSFTERLMNHGVEPA------ 715 Query: 757 EKEWKSKRIIKGLK 770 K R++ GL+ Sbjct: 716 -KGTGGVRLLWGLR 728 >gi|300023255|ref|YP_003755866.1| phage/plasmid primase, P4 family [Hyphomicrobium denitrificans ATCC 51888] gi|299525076|gb|ADJ23545.1| phage/plasmid primase, P4 family [Hyphomicrobium denitrificans ATCC 51888] Length = 401 Score = 245 bits (624), Expect = 3e-62, Method: Composition-based stats. Identities = 83/412 (20%), Positives = 140/412 (33%), Gaps = 35/412 (8%) Query: 261 DEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYK 320 E + + + A K + + + +A F+ Y Sbjct: 21 HEADAAPRISKSERPPENTLADKVAVIRPRENSAVSQLDVDRPSGFSDEALALD-FAHYH 79 Query: 321 KGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNS 380 + Y A W +WS T + ++M F + V + + Sbjct: 80 RDDLRYVA---IW-----GKWLLWSGTQWRADDTLMAF-----DLVRHVCRDAAAR---- 122 Query: 381 KSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLET 440 T+ + + + +A + TSD D+ + L G++DL T Sbjct: 123 ------CKTERLSTTIASAKTVAAVERLAKADRRLAATSDQWDADAWALNTPAGLVDLRT 176 Query: 441 GQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNK 499 G Y T+ T G F D ++ +E+ + R G AL G + Sbjct: 177 GILKPSLPSDYNTRLTTVA--PGGSCPIFRDFLNRITGGDKELQKFLQRAFGYALTGSVQ 234 Query: 500 AQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGS 559 + G G +GKS L+ I G+ + + + L L G+ Sbjct: 235 EHALLFFYGTGANGKSVLLKTISDILGDYHQQAPIETFTA----SIHQRHETELAALRGA 290 Query: 560 RIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNP 619 R+V ET E A+IK +TGGD ++AR Y + F I N +R Sbjct: 291 RLVTAVETEEGRRWAEARIKTLTGGDKISARFM-RQDYFQFDPQFKLVIAGNHKPGLRTV 349 Query: 620 DDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISK 669 D+A RR+ ++PF I RD KL+ KW ++G + + Sbjct: 350 DEAIRRRFHLVPFAVTIPPAERDPDLTTKLQ-SEWPGILKWMIEGCLEWQRR 400 >gi|313895604|ref|ZP_07829160.1| phage/plasmid primase, P4 family, C-terminal domain protein [Selenomonas sp. oral taxon 137 str. F0430] gi|312975730|gb|EFR41189.1| phage/plasmid primase, P4 family, C-terminal domain protein [Selenomonas sp. oral taxon 137 str. F0430] Length = 830 Score = 244 bits (622), Expect = 5e-62, Method: Composition-based stats. Identities = 68/441 (15%), Positives = 153/441 (34%), Gaps = 28/441 (6%) Query: 341 VYIWSLTLDKITASIMNFLVSMKEDVFDLSEE--PEDNNKNSKSPRFWFNTDYRRQNVEE 398 Y + + + ++ ++ + VF +E+ + P + + + Sbjct: 403 WYEPTKSGLRFLPGVLAKEMAGAQQVFYAAEQHFCYRAGVYHEMPEMEAQRMVQEKLLLR 462 Query: 399 NSKAKSTAQSLEA-GSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTG 457 S+ + + + + L+++S + ++G+ ++ T + T Sbjct: 463 ESRMRHIVDAEKQWRLLVQRDVRELNANSFIINVKNGLYNVLEDTLSVHTPDYCSTVQLN 522 Query: 458 TPFVEGEPSQEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKST 516 + +G F ++ + +G L+ N AQ+ I GV +GKS Sbjct: 523 VAYDKGADCPRFKQFLAESMGGDMAQVALLQEMLGYFLIPVNSAQKCFVIVGVASAGKSV 582 Query: 517 LMNLIKY-AFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA 575 L+ ++ G Q V N +A L G I ++ + + Sbjct: 583 LLRVLNDVLLGKQNVSNVS---------WQALNERFKTAELFGKLANIFADLPTKNIDDN 633 Query: 576 AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLF-VRNPDDAWWRRYIVIPFDK 634 K + G D +T N +S ++ N + + ++RR I++ F+ Sbjct: 634 GIFKALVGEDYLTVEKKNKNPFS-FQSTARLLFSCNSIPKNYGDKSEGFYRRLIIVRFNH 692 Query: 635 PIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDT 692 + RD +K + L+G++ + E ++ R+ +D+ Sbjct: 693 SVPKEKRDPELLEK-FRAEADGIFLFALQGLRRLMGNHYVFSETEKNRTELQQYREESDS 751 Query: 693 YQAWIDDCCDI--GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGG 750 +++ + C + + S L +Y Y E+ K S +T + Sbjct: 752 VLSFVKEHCIVLSEGDGCVGSTELWSAYKGYCEECG---LKPYSQKTFVQQIMTAFPHLE 808 Query: 751 IKREKIEKEWKSKRIIKGLKL 771 K ++I K R++ G+KL Sbjct: 809 RKIDRIAKR----RVLVGIKL 825 >gi|162452338|ref|YP_001614705.1| hypothetical protein sce4063 [Sorangium cellulosum 'So ce 56'] gi|161162920|emb|CAN94225.1| phage-related protein [Sorangium cellulosum 'So ce 56'] Length = 458 Score = 244 bits (622), Expect = 5e-62, Method: Composition-based stats. Identities = 66/365 (18%), Positives = 126/365 (34%), Gaps = 16/365 (4%) Query: 305 SRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLT-LDKITASIMNFLVSMK 363 + SD N + W+ + T + + L + Sbjct: 98 ASDSDLANAERLVALYGPDLRHVEALGGWHTWAGSRWCCDRATVAELAKETTRRLLTDAE 157 Query: 364 EDVFDLSEEPEDNNKNSKSPRFWFNTDY------RRQNVEENSKAKSTAQSLEAGSIFSI 417 + ++ + + + + + + + + + E I Sbjct: 158 FAMNHAAKRVKRAHDDDEVAKAKAQHKEATALFNWAKRSQSARGIDAMLRLAETEPIVRA 217 Query: 418 TSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF 477 D+ L ++G+LDL TG+ + + + F + ++ Sbjct: 218 EPGDFDADPWLLNCRNGVLDLRTGELRDHDRRDMMRRIVPVAFDPDAELPVWDRFLADVT 277 Query: 478 E-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEAS 536 EE++ + R G L G + + + G SGKST + +K G + Sbjct: 278 GNDEELIGFLRRAAGYTLTGDVRHEVLFFVHGPPASGKSTFLEALKITMGEYAAKADFET 337 Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNT 596 I + ++G + RL G+R+V+ E +E + +KQ+TGGD +TAR Y + Sbjct: 338 FIARR---DSGGPRNDIARLAGARLVLSIEVDEGKRLAEGLVKQLTGGDTVTARFLYRES 394 Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKY--T 652 + E +F ++ N VR+ D A WRR + IPF+ + RD L Sbjct: 395 F-EFKPAFKLWLAANDAPRVRDDDAAIWRRILRIPFEHTVPKEKRDPQVKAALLDPAVGG 453 Query: 653 LEAKK 657 Sbjct: 454 PAILA 458 >gi|169346926|ref|ZP_02865874.1| putative phage [Clostridium perfringens C str. JGS1495] gi|169296985|gb|EDS79109.1| putative phage [Clostridium perfringens C str. JGS1495] Length = 927 Score = 243 bits (619), Expect = 1e-61, Method: Composition-based stats. Identities = 59/383 (15%), Positives = 131/383 (34%), Gaps = 28/383 (7%) Query: 396 VEENSKAKSTAQSLEAGSIFSITSD--LLDSSSRFLGEQDGILDLETGQKVKPTKELYIT 453 + N ++ + ++ D + + + ++G+LD+ + T T Sbjct: 560 MLPNYCIMASIRDCREQWDILVSKDFDDFNRNPYLVNVRNGLLDIRDMSFKEHTPSYLST 619 Query: 454 KSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSG 513 + +F ++ +++ VG L +Q+ G +G Sbjct: 620 VQLNVEYNPQVDCPQFKKFLNEVL-DCKLIPLVQEIVGYLLTTNTASQKAFVFWGPARTG 678 Query: 514 KSTLMNLIKYAF-GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDE 572 KSTL+ +++Y G + V N +I L+G + S+ Sbjct: 679 KSTLLWVVEYLLLGKKNVSNIPWQEIGDK---------FKTAELLGKLANVFSDLPSKSI 729 Query: 573 INAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVR-NPDDAWWRRYIVIP 631 + K +TG D + A N + N+ + + ++RR I++P Sbjct: 730 DDTGIFKVVTGEDYLMAEKKNKNPFKF-KPFARLVFSCNELPRNYVDRTEGFYRRLIIVP 788 Query: 632 FDKPIANR--DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQG 689 F + I D + K + W L+G+K + E+ K+E ++ Sbjct: 789 FSRQIEKSKIDKALKYKFQR-EKEGILNWALEGLKRLYENNFEFSENELTDGVKKEYKRE 847 Query: 690 TDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIG 749 + +++++CC+I + ++Y E+ + K +S L+ Sbjct: 848 NNNVISFVEECCEIDSLFSCSRIEIYEAYKEFCVEAG---LKALSQIKFNKELEGN---- 900 Query: 750 GIKREKIEKEWKSKRIIKGLKLK 772 R+ G+++K Sbjct: 901 ---FNITRSRSGKLRLWNGVRIK 920 >gi|229890279|sp|P0C9X2|H962R_ASFK5 RecName: Full=Putative helicase C962R Length = 962 Score = 242 bits (618), Expect = 1e-61, Method: Composition-based stats. Identities = 102/727 (14%), Positives = 223/727 (30%), Gaps = 88/727 (12%) Query: 135 FVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPS 194 + Y K Y T P + + ++ + +++ + Sbjct: 208 SLLYGSSKLNHKPYQLKTGFELVFDSSDPDYIPIHQIKNIESYNLVSELSLTNEQGSLVR 267 Query: 195 KTWTNNNNRQYTNREITA-------------------FLSCFGEEFYNGSHDEWIPVVMA 235 + + EI A + Y + W VV A Sbjct: 268 PVYCAADIAAEKEEEIPADDHSLSILMLHDPEARYLHKILNLLPPEYYVEYPLWSNVVFA 327 Query: 236 VHHETRGSSKGKEIARRWSKQGS-TYD---EENFNYKWDTFDFEEIGDTAKK---RSTFT 288 + + S+ + +A +S++ ++ +E W+ K+ Sbjct: 328 LANT---SANYRPLAEWFSQKCPEKWNTGGKEKLEKLWNDASHHTEKKITKRSIMYWAHK 384 Query: 289 SLFYHHGKLIPKGLLA----------SRFSDAY-NKAMFSIYKKGHFLYTADTKA--WYK 335 + +++ +G + K ++++ + W++ Sbjct: 385 HAPQQYKEIVEQGYFSILAEYVYSYNGTLEHYMIAKVIYAMMGNKFVVDVDSNGKYVWFE 444 Query: 336 KDKNNVYIWSLTLDK-------------ITASIMNFLVSMKEDVFDLSEEPEDNNKNSKS 382 + + K I+ + + + E + +P + N + Sbjct: 445 FVLPGQPMNQGEIWKWRKEVNPDELHIYISENFSRVMDRITEHIKYHLSQPHETNILNYY 504 Query: 383 PRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLE--T 440 + + + + +S K + E LD++ LG +G+L +E Sbjct: 505 KKLLKAFERSKSKIFNDSFKKGVIRQAEFLFRQRSFIQTLDTNPHLLGVGNGVLSIETIP 564 Query: 441 GQKVKPTKELYITKSTGTPFVEGEPSQEF----LDLVSGYFESEEVMDYFTRCVGMALLG 496 + + E I + T +V P + L+ + + + + A+ Sbjct: 565 AKLINHFHEHPIHQYTHICYVPFNPENPWTKLLLNALQDIIPELDARLWIMFYLSTAIFR 624 Query: 497 GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRL 556 G K + G G +GK+ LM L+ G+ Y S + R A K N + +RL Sbjct: 625 GLKEALMLLWLGGGCNGKTFLMRLVAMVLGDHYASKLNISLLTSYR-ETAEKPNSAFMRL 683 Query: 557 MGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV 616 G ETN+++ +N +++K+M +TAR S + T N + + Sbjct: 684 KGRGYGYFEETNKSEVLNTSRLKEMVNPGDVTARELNQKQES-FQMTATMVAASNYNFII 742 Query: 617 RNPDDAWWRRYI----VIPFDKPI-------ANRDASFAQKLET-----KYTLEAKKWFL 660 D WRR + F D F + +F Sbjct: 743 DTTDHGTWRRLRHYRSKVKFCHNPDPNNSYEKKEDPRFIHEYIMDPNCQNAFFSILVYFW 802 Query: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEES--HSLAKSY 718 + ++ + + E R+ DT +I + + + +Y Sbjct: 803 EKLQKEYNGQIKKVFCPTIESETEAYRKSQDTLHRFITERVVESPSAETVYNLSEVVTAY 862 Query: 719 SEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESV 778 +E+ +N R + L L Q+ + + ++ RI+KG ++ FE++ Sbjct: 863 AEWYNANINVKRH------IALELSQE-LENSVLEKYLQWSPNKTRILKGCRILHKFETL 915 Query: 779 DDNSNII 785 + I Sbjct: 916 QPGESYI 922 >gi|9628179|ref|NP_042765.1| pC962R [African swine fever virus] gi|82051501|sp|Q65162|H962R_ASFB7 RecName: Full=Putative helicase C962R gi|780441|gb|AAA65301.1| pC962R [African swine fever virus] gi|162849281|emb|CAN10171.1| pC962R [African swine fever virus Benin 97/1] gi|1097461|prf||2113434BY C962R gene Length = 962 Score = 242 bits (617), Expect = 2e-61, Method: Composition-based stats. Identities = 100/727 (13%), Positives = 223/727 (30%), Gaps = 88/727 (12%) Query: 135 FVAYNIHPKTKKEYTWTTPPHRFKVEDTPL-LSEEDVEYLFKFFQ----EITVPLVKDKK 189 + Y K Y T P + ++ + + +T + Sbjct: 208 SLLYGSSKLNHKPYQLKTGFELVFDSSDPDYIPIHQIKNIESYNLVSELSLTNEQGSLVR 267 Query: 190 SIIPSKTWTNNNNRQYTNRE--------------ITAFLSCFGEEFYNGSHDEWIPVVMA 235 + + + + + Y + W VV A Sbjct: 268 PVYCAADIAAEKEEEIPTDDHSLSILMLHDPEARYLHKILNLLPPEYYVEYPLWSNVVFA 327 Query: 236 VHHETRGSSKGKEIARRWSKQGS-TYD---EENFNYKWDTFDFEEIGDTAKK---RSTFT 288 + + S+ + +A +S++ ++ +E W+ K+ Sbjct: 328 LANT---SANYRPLAEWFSQKCPEKWNTGGKEKLEKLWNDASRHTEKKITKRSIMYWAHK 384 Query: 289 SLFYHHGKLIPKGLLA------SRFS-----DAYNKAMFSIYKKGHFLYTADTKA--WYK 335 + +++ +G + ++ K ++++ + W++ Sbjct: 385 HAPQQYKEIVEQGYFSILAEYVYSYNGMLEHYMIAKVIYAMMGNKFVVDVDSNGKYVWFE 444 Query: 336 KDKNNVYIWSLTLDK-------------ITASIMNFLVSMKEDVFDLSEEPEDNNKNSKS 382 + + K I+ + + + E + +P + N + Sbjct: 445 FVLPGQPMNQGEIWKWRKEVNPDELHIYISENFSRVMDRITEHIKYHLSQPHETNILNYY 504 Query: 383 PRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLE--T 440 + + + + +S K + E LD++ LG +G+L +E Sbjct: 505 KKLLKAFERSKSKIFNDSFKKGVIRQAEFLFRQRSFIQTLDTNPHLLGVGNGVLSIETIP 564 Query: 441 GQKVKPTKELYITKSTGTPFVEGEPSQEF----LDLVSGYFESEEVMDYFTRCVGMALLG 496 + + E I + T +V P + L+ + + + + A+ Sbjct: 565 AKLINHFHEHPIHQYTHICYVPFNPENPWTKLLLNALQDIIPELDARLWIMFYLSTAIFR 624 Query: 497 GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRL 556 G K + G G +GK+ LM L+ G+ Y S + R A K N + +RL Sbjct: 625 GLKEALMLLWLGGGCNGKTFLMRLVAMVLGDHYASKLNISLLTSCR-ETAEKPNSAFMRL 683 Query: 557 MGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV 616 G ETN+++ +N +++K+M +TAR S + T N + + Sbjct: 684 KGRGYGYFEETNKSEVLNTSRLKEMVNPGDVTARELNQKQES-FQMTATMVAASNYNFII 742 Query: 617 RNPDDAWWRRYI----VIPFDKPI-------ANRDASFAQKLET-----KYTLEAKKWFL 660 D WRR + F D F + +F Sbjct: 743 DTTDHGTWRRLRHYRSKVKFCHNPDPGNPYEKKEDPRFIHEYIMDPDCQNAFFSILVYFW 802 Query: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEES--HSLAKSY 718 + ++ + + E R+ DT +I + + + +Y Sbjct: 803 EKLQKEYNGQIKKVFCPTIESETEAYRKSQDTLHRFITERVVESPSAETVYNLSEVVTAY 862 Query: 719 SEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESV 778 +E+ +N R + L L Q+ + + ++ RI+KG ++ FE++ Sbjct: 863 AEWYNANINVKRH------IALELSQE-LENSVLEKYLQWSPNKTRILKGCRILHKFETL 915 Query: 779 DDNSNII 785 + I Sbjct: 916 QPGESYI 922 >gi|242279615|ref|YP_002991744.1| P4 family phage/plasmid primase [Desulfovibrio salexigens DSM 2638] gi|242122509|gb|ACS80205.1| phage/plasmid primase, P4 family [Desulfovibrio salexigens DSM 2638] Length = 788 Score = 242 bits (617), Expect = 2e-61, Method: Composition-based stats. Identities = 61/359 (16%), Positives = 127/359 (35%), Gaps = 24/359 (6%) Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEG--EPSQEFLDLVSGYFESE 480 D + Q+G+L+L+T + + + T F + + + ++ Sbjct: 446 DRDEW-VCLQNGMLNLKTLELKPHEHDYFSTICLNVSFDPDSEARCERWEKFLQQTVQTP 504 Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540 E + G+ L + ++ + + G G GKSTL+ +++ D+ Sbjct: 505 EPIAQLQEFAGLCLTRDTRFEKCLLLLGPGSDGKSTLLKVLRELVCAANCSAVAFQDLED 564 Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600 L + I +E + + K + GD + + +++ E Sbjct: 565 QFRR---------ASLYNKLLNISTEIG-SAAMETPIFKAVVSGDAIQGAFKHKDSF-EF 613 Query: 601 PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI----ANRDASFAQKLETKYTLEAK 656 NK V + D ++RR + I F K +R+ ++L E Sbjct: 614 TPFCKLAFAANKLPRVLDNTDGFFRRMLPIEFKKQFLEDDPDRNPHLFEELIEHELSEIF 673 Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAK 716 W L G+ +G + + + R+ + QA+++D C++ + + SL K Sbjct: 674 HWALVGLHRLYEQG-KFTSCDETRELLMDYRRLNNPVQAFVEDKCELEDGAKQSKDSLYK 732 Query: 717 SYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAF 775 SY EY + + + L + +K + K R++ G+K K Sbjct: 733 SYREYSSENG---YQAMHKENFFRELYAA--VKTLKETRPSINGKRCRMVAGIKTKFEL 786 >gi|162849454|emb|CAN10420.1| pC962R [African swine fever virus OURT 88/3] Length = 962 Score = 242 bits (616), Expect = 3e-61, Method: Composition-based stats. Identities = 100/727 (13%), Positives = 223/727 (30%), Gaps = 88/727 (12%) Query: 135 FVAYNIHPKTKKEYTWTTPPHRFKVEDTPL-LSEEDVEYLFKFFQ----EITVPLVKDKK 189 + Y K Y T P + ++ + + +T + Sbjct: 208 SLLYGSSKLNHKPYQLKTGFELVFDSSDPDYIPIHQIKNIESYNLVSELSLTNEQGSLVR 267 Query: 190 SIIPSKTWTNNNNRQYTNRE--------------ITAFLSCFGEEFYNGSHDEWIPVVMA 235 + + + + + Y + W VV A Sbjct: 268 PVYCAADIAAEKEEEIPTDDHSLSILMLHDPEARYLHKILNLLPPEYYVEYPLWSNVVFA 327 Query: 236 VHHETRGSSKGKEIARRWSKQGS-TYD---EENFNYKWDTFDFEEIGDTAKK---RSTFT 288 + + S+ + +A +S++ ++ +E W+ K+ Sbjct: 328 LANT---SANYRPLAEWFSQKCPEKWNTGGKEKLEKLWNDASRHTEKKITKRSIMYWAHK 384 Query: 289 SLFYHHGKLIPKGLLA------SRFS-----DAYNKAMFSIYKKGHFLYTADTKA--WYK 335 + +++ +G + ++ K ++++ + W++ Sbjct: 385 HAPQQYKEIVEQGYFSILAEYVYSYNGMLEHYMIAKVIYAMMGNKFVVDVDSNGKYVWFE 444 Query: 336 KDKNNVYIWSLTLDK-------------ITASIMNFLVSMKEDVFDLSEEPEDNNKNSKS 382 + + K I+ + + + E + +P + N + Sbjct: 445 FVLPGQPMNQGEIWKWRKEVNPDELHIYISENFSRVMDRITEHIKYHLSQPHETNILNYY 504 Query: 383 PRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLE--T 440 + + + + +S K + E LD++ LG +G+L +E Sbjct: 505 KKLLKAFERSKSKIFNDSFKKGVIRQAEFLFRQRSFIQTLDTNPHLLGVGNGVLSIETIP 564 Query: 441 GQKVKPTKELYITKSTGTPFVEGEPSQEF----LDLVSGYFESEEVMDYFTRCVGMALLG 496 + + E I + T +V P + L+ + + + + A+ Sbjct: 565 AKLINHFHEHPIHQYTRICYVPFNPENPWTKLLLNALQDIIPELDARLWIMFYLSTAIFR 624 Query: 497 GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRL 556 G K + G G +GK+ LM L+ G+ Y S + R A K N + +RL Sbjct: 625 GLKEALMLLWLGGGCNGKTFLMRLVAMVLGDHYASKLNISLLTSCR-ETAEKPNSAFMRL 683 Query: 557 MGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV 616 G ETN+++ +N +++K+M +TAR S + T N + + Sbjct: 684 KGRGYGYFEETNKSEVLNTSRLKEMVNPGDVTARELNQKQES-FQMTATMVAASNYNFII 742 Query: 617 RNPDDAWWRRYI----VIPFDKPI-------ANRDASFAQKLET-----KYTLEAKKWFL 660 D WRR + F D F + +F Sbjct: 743 DTTDHGTWRRLRHYRSKVKFCHNPDPGNPYEKKEDPRFIHEYIMDPDCQNAFFSILVYFW 802 Query: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEES--HSLAKSY 718 + ++ + + E R+ DT +I + + + +Y Sbjct: 803 EKLQKEYNGQIKKVFCPTIESETEAYRKSQDTLHRFITERVVESPSAETVYNLSEVVTAY 862 Query: 719 SEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESV 778 +E+ +N R + L L Q+ + + ++ RI+KG ++ FE++ Sbjct: 863 AEWYNANINVKRH------IALELSQE-LENSVLEKYLQWSPNKTRILKGCRILHKFETL 915 Query: 779 DDNSNII 785 + I Sbjct: 916 QPGESYI 922 >gi|303326922|ref|ZP_07357364.1| phage/plasmid primase, P4 family [Desulfovibrio sp. 3_1_syn3] gi|302862910|gb|EFL85842.1| phage/plasmid primase, P4 family [Desulfovibrio sp. 3_1_syn3] Length = 540 Score = 241 bits (615), Expect = 3e-61, Method: Composition-based stats. Identities = 82/504 (16%), Positives = 174/504 (34%), Gaps = 43/504 (8%) Query: 308 SDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWS-LTLDKITASIMNFLVSMKEDV 366 + + ++ + +Y + + ++ + + + + E Sbjct: 49 NRVGDAKLYCRLHRDTVIYVKYWERFLIWGGHHWIEDDYEAAFQRIEEVCELYLRLAEHK 108 Query: 367 FDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEE--NSKAKSTAQSLEAGSIFSITSDLLDS 424 ++E + ++ + + RR N+ N + K + +D Sbjct: 109 QTEADEADK--EDKPKIQSLVDAALRRVNLLRDTNGQEKLMLMVRRIRDPLVVLPKHIDQ 166 Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVE-----GEPSQEFLDLVSGYF-E 478 +G++DL TG+ E YI + T + +P E + Sbjct: 167 RHYVKACPNGVIDLRTGELRPGRPEEYILNAIVTEYDPALLEQDDPCPETNKFLLSSMDG 226 Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGV-GGSGKSTLMNLIKYAFGNQYVINAEASD 537 +E++D+ R +G L+ + F G G +GK TL+ L+ + G + Sbjct: 227 DQELVDFIWRLLGYGLVTERRDHIFTIFWGEHGRNGKDTLIKLVTHVLGQTLSGDVPVEM 286 Query: 538 IMQ-NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNT 596 +Q + + +P ++ L G + I+E E AK+K++TGG +TAR Sbjct: 287 FLQMQQTRNSSAPSPDVLALRGMCLAWINEAEEGQRFALAKLKKLTGGGYVTARGLQDKQ 346 Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR---------DASFAQKL 647 + + P + N+ + D A+W R +++ + D +K+ Sbjct: 347 QTTWLQTHLPIMTTNELPKAKADDAAFWARAVLVKWPLSFVEEPQQPYERPADKDLNEKI 406 Query: 648 ETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGEN- 706 ++G Y+ GL IP+ E+R D +I D C+ + Sbjct: 407 C-AEAKGVLARMVRGCMEYLRDGLK--IPDKVKNWTREQRASWDDVGLFITDWCEQESHQ 463 Query: 707 -------LWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKE 759 S L +++ + + + R IS + L +K I ++ Sbjct: 464 DNPDAYATRISSTDLHEAFCIWYARNRD-KRFSISAKKFAEMLNKKD----IPYKRSNGS 518 Query: 760 WKSKRIIKGLKLKPAFESVDDNSN 783 W+ G++L E+ + Sbjct: 519 WR-----LGIRLNAEGENALADYR 537 >gi|206601900|gb|EDZ38382.1| DNA primase [Leptospirillum sp. Group II '5-way CG'] Length = 717 Score = 241 bits (615), Expect = 3e-61, Method: Composition-based stats. Identities = 69/434 (15%), Positives = 153/434 (35%), Gaps = 32/434 (7%) Query: 346 LTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKST 405 + + K F +E + R + +++ + Sbjct: 305 GVAEALDDGSNLIFAQSKFWAFSETEGIWRESPEESVKRAIQIVCRENGLLVKDNFVRGA 364 Query: 406 AQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETG--QKVKPTKELYITKSTGTPFVEG 463 S +A + D +D S +G +G+L G +E Y + Sbjct: 365 FNSAKARFFRDVQFDQIDKRS--IGAANGVLRYIDGGWSLTPYRREDYRRIRLPVTYDPK 422 Query: 464 EPSQEFLDLVSGYF-ESEEVMD---YFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMN 519 F +S F + + + +G+++ + ++ + + G GG+GKS L+ Sbjct: 423 AKCPRFEQFLSEVFDGTPDKRERGLTVLEFLGLSMTATTEYEKALLLVGKGGNGKSVLLR 482 Query: 520 LIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIK 579 +++ G + + + + L G + I+SE +E E+ A+IK Sbjct: 483 VLESLIGGKNRSSVQLKQLEN---------RFQRAHLDGKLVNIMSELSEGGEVPDAEIK 533 Query: 580 QMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN- 638 + G+ +TA + + E +I N VR+ D +RR++++ F + Sbjct: 534 AIISGEPITAEHKQKHPF-EFFPVCKLWIATNHMPSVRDLSDGLFRRFVILNFPNRFDDK 592 Query: 639 --RDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAW 696 RD ++KL + LK + + + P L+A + ++ +D + Sbjct: 593 PSRDTKLSEKL-AAEASGILNYCLKALSGVYERE-SLTEPTSSLEAVQGWKRDSDQTSQF 650 Query: 697 IDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKI 756 ++D + S Y ++ ++ ++ + ++ T L G Sbjct: 651 LEDEMILEPGASIASSEAYHLYVDWAKEVG--IKRTLGRKSFTERLVNHGVEPA------ 702 Query: 757 EKEWKSKRIIKGLK 770 K R++ GL+ Sbjct: 703 -KGPGGVRLLWGLR 715 >gi|229890280|sp|P0C9X3|H962R_ASFP4 RecName: Full=Putative helicase C962R Length = 962 Score = 241 bits (615), Expect = 3e-61, Method: Composition-based stats. Identities = 100/727 (13%), Positives = 223/727 (30%), Gaps = 88/727 (12%) Query: 135 FVAYNIHPKTKKEYTWTTPPHRFKVEDTPL-LSEEDVEYLFKFFQ----EITVPLVKDKK 189 + Y K Y T P + ++ + + +T + Sbjct: 208 SLLYGSSKLNHKPYQLKTGFELVFDSSDPDYIPIHQIKNIESYNLVSELSLTNEQGSLVR 267 Query: 190 SIIPSKTWTNNNNRQYTNRE--------------ITAFLSCFGEEFYNGSHDEWIPVVMA 235 + + + + + Y + W VV A Sbjct: 268 PVYCAADIAAEKEEEIPTEDHSLSILMLHDPEARYLHKILNLLPPEYYVEYPLWSNVVFA 327 Query: 236 VHHETRGSSKGKEIARRWSKQGS-TYD---EENFNYKWDTFDFEEIGDTAKK---RSTFT 288 + + S+ + +A +S++ ++ +E W+ K+ Sbjct: 328 LANT---SANYRPLAEWFSQKCPEKWNTGGKEKLEQLWNDASRHTEKKITKRSIMYWAHK 384 Query: 289 SLFYHHGKLIPKGLLA------SRFS-----DAYNKAMFSIYKKGHFLYTADTKA--WYK 335 + +++ +G + ++ K ++++ + W++ Sbjct: 385 HAPQQYKEIVEQGYFSILAEYVYSYNGILEHYMIAKVIYAMMGNKFVVDVDSNGKYVWFE 444 Query: 336 KDKNNVYIWSLTLDK-------------ITASIMNFLVSMKEDVFDLSEEPEDNNKNSKS 382 + + K I+ + + + E + +P + N + Sbjct: 445 FVLPGQPMNQGEIWKWRKEVNPDELHIYISENFSRVMDRITEHIKYHLSQPHETNILNYY 504 Query: 383 PRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLE--T 440 + + + + +S K + E LD++ LG +G+L +E Sbjct: 505 KKLLKAFERSKSKIFNDSFKKGVIRQAEFLFRQRSFIQTLDTNPHLLGVGNGVLSIETIP 564 Query: 441 GQKVKPTKELYITKSTGTPFVEGEPSQEF----LDLVSGYFESEEVMDYFTRCVGMALLG 496 + + E I + T +V P + L+ + + + + A+ Sbjct: 565 AKLINHFHEYPIHQYTHICYVPFNPENPWTKLLLNALQDIIPELDARLWIMFYLSTAIFR 624 Query: 497 GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRL 556 G K + G G +GK+ LM L+ G+ Y S + R A K N + +RL Sbjct: 625 GLKEALMLLWLGGGCNGKTFLMRLVAMVLGDHYASKLNISLLTSYR-ETAEKPNSAFMRL 683 Query: 557 MGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV 616 G ETN+++ +N +++K+M +TAR S + T N + + Sbjct: 684 KGRGYGYFEETNKSEVLNTSRLKEMVNPGDVTARELNQKQES-FQMTATMVAASNYNFII 742 Query: 617 RNPDDAWWRRYI----VIPFDKPI-------ANRDASFAQKLET-----KYTLEAKKWFL 660 D WRR + F D F + +F Sbjct: 743 DTTDHGTWRRLRHYRSKVKFCHNPDPNNSYEKKEDPRFIHEYIMDPNCQNAFFSILVYFW 802 Query: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEES--HSLAKSY 718 + ++ + + E R+ DT +I + + + +Y Sbjct: 803 EKLQKEYNGQIKKVFCPTIESETEAYRKSQDTLHRFITERIVESPSAETVYNLSEVVTAY 862 Query: 719 SEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESV 778 +E+ +N R + L L Q+ + + ++ RI+KG ++ FE++ Sbjct: 863 AEWYNANINVKRH------IALELSQE-LENSVLEKYLQWSPNKTRILKGCRILHKFETL 915 Query: 779 DDNSNII 785 + I Sbjct: 916 QPGESYI 922 >gi|303398756|emb|CBW46737.1| C962R [African swine fever virus Georgia 2007/1] Length = 962 Score = 241 bits (615), Expect = 3e-61, Method: Composition-based stats. Identities = 101/727 (13%), Positives = 224/727 (30%), Gaps = 88/727 (12%) Query: 135 FVAYNIHPKTKKEYTWTTPPHRFKVEDTPL-LSEEDVEYLFKFFQ----EITVPLVKDKK 189 + Y K Y T P + ++ L + +T + Sbjct: 208 SLLYGSSKLNHKPYQLKTGFELVFDSSDPDYIPIHQIKNLESYNLVSELSLTNEQGSLVR 267 Query: 190 SIIPSKTWTNNNNRQYTNRE--------------ITAFLSCFGEEFYNGSHDEWIPVVMA 235 + + + + + Y + W VV A Sbjct: 268 PVYCAADIAAEKEEEIPTEDHSLSILMLHDPEARYLHKILNLLPPEYYVEYPLWSNVVFA 327 Query: 236 VHHETRGSSKGKEIARRWSKQGS-TYD---EENFNYKWDTFDFEEIGDTAKK---RSTFT 288 + + S+ + +A +S++ ++ +E W+ K+ Sbjct: 328 LANT---SANYRPLAEWFSQKCPEKWNTGGKEKLEKLWNDASHHTEKKITKRSIMYWAHK 384 Query: 289 SLFYHHGKLIPKGLLA------SRFS-----DAYNKAMFSIYKKGHFLYTADTKA--WYK 335 + +++ +G + ++ K ++++ + W++ Sbjct: 385 HAPQQYKEIVEQGYFSILAEYVYSYNGMLEHYMIAKVIYAMMGNKFVVDVDSNGKYVWFE 444 Query: 336 KDKNNVYIWSLTLDK-------------ITASIMNFLVSMKEDVFDLSEEPEDNNKNSKS 382 + + K I+ + + + E + +P ++N + Sbjct: 445 FVLPGQPMNQGEIWKWRKEVNPDELHIYISENFSRVMDRITEHIKYHLSQPHESNILNYY 504 Query: 383 PRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLE--T 440 + + + + +S K + E LD++ LG +G+L +E Sbjct: 505 KKLLKAFERSKSKIFNDSFKKGVIRQAEFLFRQRSFIQTLDTNPHLLGVGNGVLSIETIP 564 Query: 441 GQKVKPTKELYITKSTGTPFVEGEPSQEF----LDLVSGYFESEEVMDYFTRCVGMALLG 496 + + E I + T +V P + L+ + + + + A+ Sbjct: 565 AKLINHFHEHPIHQYTHICYVPFNPENPWTKLLLNALQDIIPELDARLWIMFYLSTAIFR 624 Query: 497 GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRL 556 G K + G G +GK+ LM L+ G+ Y S + R A K N + +RL Sbjct: 625 GLKEALMLLWLGGGCNGKTFLMRLVAMVLGDHYASKLNISLLTSCR-ETAEKPNSAFMRL 683 Query: 557 MGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV 616 G ETN+++ +N +++K+M +TAR S + T N + + Sbjct: 684 KGRGYGYFEETNKSEVLNTSRLKEMVNPGDVTARELNQKQES-FQMTATMVAASNYNFII 742 Query: 617 RNPDDAWWRRYI----VIPFDKPI-------ANRDASFAQKLET-----KYTLEAKKWFL 660 D WRR + F D F + +F Sbjct: 743 DTTDHGTWRRLRHYRSKVKFCHNPDPSNPYEKKEDPRFIHEYIMDPDCQNAFFSILVYFW 802 Query: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEES--HSLAKSY 718 + ++ + + E R+ DT +I + + + +Y Sbjct: 803 EKLQKEYNGQIKKVFCPTIESETEAYRKSQDTLHRFITERVVESPSAETVYNLSEVVTAY 862 Query: 719 SEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESV 778 +E+ +N R + L L Q+ + + ++ RI+KG ++ FE++ Sbjct: 863 AEWYNTNINVKRH------IALELSQE-LENSVLEKYLQWSPNKTRILKGCRILHKFETL 915 Query: 779 DDNSNII 785 + I Sbjct: 916 QPGESYI 922 >gi|306826829|ref|ZP_07460130.1| virulence-associated protein E [Streptococcus pyogenes ATCC 10782] gi|304430992|gb|EFM34000.1| virulence-associated protein E [Streptococcus pyogenes ATCC 10782] Length = 794 Score = 241 bits (615), Expect = 3e-61, Method: Composition-based stats. Identities = 79/527 (14%), Positives = 171/527 (32%), Gaps = 39/527 (7%) Query: 270 DTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTAD 329 D F + G + + + ++ + NK S + Sbjct: 286 DVFAYSHHGTDPVGDTLVNAYDLVRIHKFGEQDSEAKDNTPTNKLPSSKAMNAFVCDLPE 345 Query: 330 TKAWYKKD-----KNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEP-------EDNN 377 K + + + + V+ + +E E Sbjct: 346 IKDYLMAEALGDFDEELPVEDDRSWLEIDERGEPEVNSYLLATQIIKEVPIYWDGFEFLR 405 Query: 378 KNSKS------PRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLL-DSSSRFLG 430 ++K + + + + + +K + ++++ A + +S++ +S + Sbjct: 406 YDAKKGIWLPNAEEFIRSYISTKKLGKITKIRHISETIVAIKAQAFSSEVFTESDLNKIV 465 Query: 431 EQDGILDLETGQKV-KPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRC 489 +G+ DL K EL+ S + + F + E +D+ Sbjct: 466 LANGVYDLRDNSFKTKFDPELHARSSHPVVYDPEAACETFEGFLRETVG-AENIDFIFEW 524 Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549 G Q+ + I G GG+GKSTL+N+++ G +MQ R + G Sbjct: 525 FGYNFYREYTIQKMLFIYGSGGTGKSTLINILREMIGADNYSAVTLQYLMQERFAKIG-- 582 Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609 L ++ + A +K +TG D + A Sbjct: 583 ------LYRKTANFDTDAKPQYLADGATLKMLTGEDTIHADRKNKEP-INFYNYAKLSFA 635 Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDKPIANR-DASFAQKLETKYTLEAKKWFLKGVKAYIS 668 N+ +R+ RR +++ DK + A + ++G++ +S Sbjct: 636 MNELPPMRDFSGGLKRRMMILEMDKVLTQEVKAKYPLDKIMGEVPGIFNRAMEGLRKALS 695 Query: 669 KGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNY 728 K D I + + E+ +G D +++D C++GE+ + +Y Y + Sbjct: 696 KR-DFSISDSMRSSVEKWEKGNDVVAMFLEDECELGEDFKVPVRDVYPAYKFYCQDSG-- 752 Query: 729 DRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAF 775 K ++ + T + + F + + K+ R G +LK F Sbjct: 753 -YKPLARNSFTQRMNELNFEN----KNAKMGGKTVRCWIGFRLKGEF 794 >gi|229890281|sp|P0C9X1|H962R_ASFWA RecName: Full=Putative helicase C962R Length = 962 Score = 241 bits (615), Expect = 4e-61, Method: Composition-based stats. Identities = 100/727 (13%), Positives = 223/727 (30%), Gaps = 88/727 (12%) Query: 135 FVAYNIHPKTKKEYTWTTPPHRFKVEDTPL-LSEEDVEYLFKFFQ----EITVPLVKDKK 189 + Y K Y T P + ++ + + +T + Sbjct: 208 SLLYGSSKLNHKPYQLKTGFELVFDSSDPDYIPIHQIKNIESYNLVSELSLTNEQGSLVR 267 Query: 190 SIIPSKTWTNNNNRQYTNRE--------------ITAFLSCFGEEFYNGSHDEWIPVVMA 235 + + + + + Y + W VV A Sbjct: 268 PVYCAADIAAEKEEEIPTEDHSLSILMLHDPEARYLHKILNLLPPEYYVEYPLWSNVVFA 327 Query: 236 VHHETRGSSKGKEIARRWSKQGS-TYD---EENFNYKWDTFDFEEIGDTAKK---RSTFT 288 + + S+ + +A +S++ ++ +E W+ K+ Sbjct: 328 LANT---SANYRPLAEWFSQKCPEKWNTGGKEKLEQLWNDASRHTEKKITKRSIMYWAHK 384 Query: 289 SLFYHHGKLIPKGLLA------SRFS-----DAYNKAMFSIYKKGHFLYTADTKA--WYK 335 + +++ +G + ++ K ++++ + W++ Sbjct: 385 HAPQQYKEIVEQGYFSILAEYVYSYNGMLEHYMIAKVIYAMMGNKFVVDVDSNGKYVWFE 444 Query: 336 KDKNNVYIWSLTLDK-------------ITASIMNFLVSMKEDVFDLSEEPEDNNKNSKS 382 + + K I+ + + + E + +P + N + Sbjct: 445 FVLPGQPMNQGEIWKWRKEVNPDELHIYISENFSRVMDRITEHIKYHLSQPHETNILNYY 504 Query: 383 PRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLE--T 440 + + + + +S K + E LD++ LG +G+L +E Sbjct: 505 KKLLKAFERSKSKIFNDSFKKGVIRQAEFLFRQRSFIQTLDTNPHLLGVGNGVLSIETIP 564 Query: 441 GQKVKPTKELYITKSTGTPFVEGEPSQEF----LDLVSGYFESEEVMDYFTRCVGMALLG 496 + + E I + T +V P + L+ + + + + A+ Sbjct: 565 AKLINHFHEHPIHQYTHICYVPFNPENPWTKLLLNALQDIIPELDARLWIMFYLSTAIFR 624 Query: 497 GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRL 556 G K + G G +GK+ LM L+ G+ Y S + R A K N + +RL Sbjct: 625 GLKEALMLLWLGGGCNGKTFLMRLVAMVLGDHYASKLNISLLTSYR-ETAEKPNSAFMRL 683 Query: 557 MGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV 616 G ETN+++ +N +++K+M +TAR S + T N + + Sbjct: 684 KGRGYGYFEETNKSEVLNTSRLKEMVNPGDVTARELNQKQES-FQMTATMVAASNYNFII 742 Query: 617 RNPDDAWWRRYI----VIPFDKPI-------ANRDASFAQKLET-----KYTLEAKKWFL 660 D WRR + F D F + +F Sbjct: 743 DTTDHGTWRRLRHYRSKVKFCHNPDPNNSYEKKEDPRFIHEYIMDPNCQNAFFSILVYFW 802 Query: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEES--HSLAKSY 718 + ++ + + E R+ DT +I + + + +Y Sbjct: 803 EKLQKEYNGQIKKVFCPTIESETEAYRKSQDTLHRFITERIVESPSAETVYNLSEVVTAY 862 Query: 719 SEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESV 778 +E+ +N R + L L Q+ + + ++ RI+KG ++ FE++ Sbjct: 863 AEWYNANINVKRH------IALELSQE-LENSVLEKYLQWSPNKTRILKGCRILHKFETL 915 Query: 779 DDNSNII 785 + I Sbjct: 916 QPGESYI 922 >gi|229890393|sp|Q8V9U4|H962R_ASFM2 RecName: Full=Putative helicase C962R Length = 962 Score = 241 bits (614), Expect = 4e-61, Method: Composition-based stats. Identities = 100/727 (13%), Positives = 221/727 (30%), Gaps = 88/727 (12%) Query: 135 FVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPS 194 + Y K Y T P + + ++ + +++ + Sbjct: 208 SLLYGSSKLNHKPYQLKTGFELVFDSSDPDYIPIHQIKNIEAYNLVSELSLTNEQGSLVK 267 Query: 195 KTWTNNNNRQYTNREI-------------------TAFLSCFGEEFYNGSHDEWIPVVMA 235 + + EI + Y + W VV A Sbjct: 268 PVYCEADIAAEKEEEIPVDDHSLSILMLHDPEARYLHKILNLLPPEYYVEYPLWSNVVFA 327 Query: 236 VHHETRGSSKGKEIARRWSKQGS-TYD---EENFNYKWDTFDFEEIGDTAKK---RSTFT 288 + + S+ + +A +S++ ++ +E W+ K+ Sbjct: 328 LANT---SANYRPLAEWFSQKCPEKWNTGGKEKLEKLWNDASRHTEKKITKRSIMYWAHK 384 Query: 289 SLFYHHGKLIPKGLLA----------SRFSDAY-NKAMFSIYKKGHFLYTADTKA--WYK 335 + +++ +G + K ++++ + W++ Sbjct: 385 HAPQQYKEIVEQGYFSILAEYVYSYNGTLEHYMIAKVIYAMMGNKFVVDVDSNGKYVWFE 444 Query: 336 KDKNNVYIWSLTLDK-------------ITASIMNFLVSMKEDVFDLSEEPEDNNKNSKS 382 + + K I+ + + + E + +P + N + Sbjct: 445 FVLPGQPMNQGEIWKWRKEVNPDELHIYISENFSRVMDRITEHIKYHLSQPHETNILNYY 504 Query: 383 PRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLE--T 440 + + + + +S K + E LD++ LG +G+L +E Sbjct: 505 KKLLKAFERSKSKIFNDSFKKGVIRQAEFLFRQRSFIQTLDTNPHLLGVGNGVLSIETIP 564 Query: 441 GQKVKPTKELYITKSTGTPFVEGEPSQEF----LDLVSGYFESEEVMDYFTRCVGMALLG 496 + + E I + T + P + L+ + + + + A+ Sbjct: 565 AKLINHFHEHPIHQYTHICYEPFNPENPWTKLLLNALQDIIPELDARLWIMFYLSTAIFR 624 Query: 497 GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRL 556 G K + G G +GK+ LM L+ G+ Y S + R A K N + +RL Sbjct: 625 GLKEALMLLWLGGGCNGKTFLMRLVAMVLGDHYASKLNISLLTSCR-ETAEKPNSAFMRL 683 Query: 557 MGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV 616 G ETN+++ +N +++K+M +TAR S + T N + + Sbjct: 684 KGRGYGYFEETNKSEVLNTSRLKEMVNPGDVTARELNQKQES-FQMTATMVAASNYNFII 742 Query: 617 RNPDDAWWRRYI----VIPFDKPI-------ANRDASFAQKLET-----KYTLEAKKWFL 660 D WRR + F D F + +F Sbjct: 743 DTTDHGTWRRLRHYRSKVKFCHNPDPNNSYEKKEDPRFIHEYIMDPNCQNAFFSILVYFW 802 Query: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEES--HSLAKSY 718 + ++ + + E R+ DT +I + + + +Y Sbjct: 803 EKLQKEYNGQIKKVFCPTIESETEAYRKSQDTLHRFITERVVESPSAETVYNLSEVVTAY 862 Query: 719 SEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESV 778 +E+ +N R + L L Q+ + + ++ RI+KG ++ FE++ Sbjct: 863 AEWYNTNINVKRH------IALELSQE-LENSVLEKYLQWSPNKTRILKGCRILHKFETL 915 Query: 779 DDNSNII 785 + I Sbjct: 916 QPGESYI 922 >gi|311743682|ref|ZP_07717488.1| conserved hypothetical protein [Aeromicrobium marinum DSM 15272] gi|311312812|gb|EFQ82723.1| conserved hypothetical protein [Aeromicrobium marinum DSM 15272] Length = 1564 Score = 240 bits (612), Expect = 7e-61, Method: Composition-based stats. Identities = 113/847 (13%), Positives = 227/847 (26%), Gaps = 130/847 (15%) Query: 6 WKEQAKQAIHNGFK-LIPLRLGDKRPQRLG--KWEEQLLSSEKIDKL----PACGFGFVC 58 + E + G+ ++P+ DK P G + + ++ + P Sbjct: 9 YAEHVADYVQAGWPCVLPVPPRDKFPPPTGFTGADGKDTDVAQVVEFAGSHPHHSIALRM 68 Query: 59 GVGEQPLYAFDID-----SKDEKTANTFKDTFEILHGTPIVRI--------GQKPKILIP 105 + D+D K + A+T E L P G P ++ Sbjct: 69 ---PDGVIGIDVDQYVKKGKQKHGADTLAALVEKLGPLPPTWSSTARGDEHGPGPSRVLL 125 Query: 106 FRMNKEGIKKKKTTESTQGHLDI--LGCGQYFVAYNIHPKTKKEYTWTTPPH--RFKVED 161 F++ + T G ++I VA +I+P+T +Y W KV + Sbjct: 126 FQVPAQRYITNLTAA-GTGDIEIIQRHHRYIVVAPSINPETGTQYQWYDETDQPSDKVPN 184 Query: 162 TPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTN-REITAFLSCFGEE 220 L+E +L + T + +I + Sbjct: 185 PLQLAELPAAWLAHLLEGATSAGPSAADPASGEALLEQLLDDWRPECADIYGARLNALDT 244 Query: 221 FYNGSHDEWIPVVMA-VHHETRGSS-----------KGKEIARRWSK---QGSTYDEENF 265 + A VHH + ++ + + I + +G+ +D Sbjct: 245 LATADAGSRHDTMTARVHHLVQLAAQGHPGVAWAITELRVIWDNLTAGELRGNEFDRMLL 304 Query: 266 NYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKG------------------------ 301 + + F G Sbjct: 305 TSARKAVTVVGTVQNPRDPCVYDLAFMVSGAAPDDATGEPGTAVAPERRWSIREVIGAHA 364 Query: 302 -LLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNV-YIWSLTLDKITASIMNFL 359 + +A+ Y DT W + + L+ Sbjct: 365 FDPPAELDQPLAQAVLERTY-PVVRYAHDTGGWLLRLPDRWTLAGDLSQW---------- 413 Query: 360 VSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAG-----SI 414 V ++ N ++ RR + AK+ A + A Sbjct: 414 -----SVAQVAGLLPIGNPEAEKGSDEHARSRRRARFNTQAGAKAIASKMAALVAAGTHP 468 Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKP--------TKELYITKSTGTPFVEGEPS 466 +I LDS+ L DL++ P T E + Sbjct: 469 CAIDLGGLDSAPDILWAGGVPWDLKSCLPDAPVQSWVAAMDPA-TPHLHTAAVLPERRDT 527 Query: 467 QEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFG 526 + ++ + EV + R + +AL G + + G G GK+ +++L+ G Sbjct: 528 PLWDAFLAAVWPDPEVRAWAVRVLSIALTG-YPDRALPILIGDTGRGKTQVVSLLMSVLG 586 Query: 527 NQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDC 586 + + A + L G R+ I E ++KQ+TGG Sbjct: 587 SYAHAADPRLMGAEGAKAHAS----IVFALKGRRLSFIDEGPREGRWAQERLKQLTGGGE 642 Query: 587 MTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQ- 645 +TA N + T + N + D A R ++P + D + Sbjct: 643 LTANQMNQNP-ITFRPTHTLVLTTNDEPALT--DPAIRARARLLP-----CDGDPEAVRI 694 Query: 646 ----------KLETKYTLEAKKWFLKGVKAYISKGLDVDIPEV---CLKAKEEERQGTDT 692 + + +++++ + E+ D Sbjct: 695 ARAAIGHTNSAAWREEAPGVLASMMAEAGSWLAEPTTAHVSAAPIHLRDMAEKVGAEQDP 754 Query: 693 YQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIK 752 + W+++ + E S L +++ + + + L + F I+ Sbjct: 755 VRVWLEEETEPWE-AGTPSRELYQAFWSSCRRSGIRADVIPTEQRWGRALSR--FEVPIQ 811 Query: 753 REKIEKE 759 K K Sbjct: 812 HTKQGKR 818 >gi|311070553|ref|YP_003975476.1| P4 family phage/plasmid primase [Bacillus atrophaeus 1942] gi|310871070|gb|ADP34545.1| P4 family phage/plasmid primase [Bacillus atrophaeus 1942] Length = 608 Score = 240 bits (611), Expect = 9e-61, Method: Composition-based stats. Identities = 60/446 (13%), Positives = 151/446 (33%), Gaps = 15/446 (3%) Query: 329 DTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFN 388 + + + D Y ++ + + S K+ L + S+ Sbjct: 157 EERGFLYDDIKKRYHFNANIFAKHFLKRCHVRSTKDGRLFLYNRVGVYEELSEVNLRKII 216 Query: 389 TDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTK 448 + + K+ + + A + + +++ F+ ++G+L+L T + + + Sbjct: 217 RAVMHEGKCYSWKSTYETEIIRALQREAPIVEEMNTERNFINVKNGMLNLSTYRLHEHSP 276 Query: 449 ELYITKSTGTPFVEGEPSQEFLDLVSGY-FESEEVMDYFTRCVGMALLGGNKAQRFIHIR 507 + T + E + +F + + + E++ +G L G KA++ ++ Sbjct: 277 KYLSTVQIPIHYDENATASKFDEFMRDITLNNPELIAVHQELIGYWLTGETKAEKAVYYY 336 Query: 508 GVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISET 567 G G +GKS L +++ G + V + S E+ ++G + I +E Sbjct: 337 GSGANGKSVLASIVTELVGPENVSSVPLSKFNDQFGMES---------MIGKSLNISAEN 387 Query: 568 NENDE-INAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRR 626 + + K + GD +T + Y + N + + ++R+ Sbjct: 388 EMGGKALKTENFKAIVSGDNITINIKYR-PAVSYRPYCRLVFLVNNLPDSSDVTEGYFRK 446 Query: 627 YIVIPFDKPIANRDAS-FAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEE 685 I++PF + + + + K W + G+K S + + + Sbjct: 447 LIIVPFSRTFKKEERNVNLKDELLKELPGILNWAVLGLKRLRSNDYQFSACKAIEETERA 506 Query: 686 ERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK 745 + + + + + YS++ + D+ S + K Sbjct: 507 YYDEQNPVKEFFHSHVVQEDGSRTKQSDFYSMYSQWLNVQGIDDKGTKSRQVFWRYFKV- 565 Query: 746 GFIGGIKREKIEKEWKSKRIIKGLKL 771 + + ++K+ K G+KL Sbjct: 566 -ILDSENIQVVKKKVKGTVYYDGIKL 590 >gi|325842743|ref|ZP_08167778.1| phage/plasmid primase, P4 family, C-terminal domain protein [Turicibacter sp. HGF1] gi|325489543|gb|EGC91908.1| phage/plasmid primase, P4 family, C-terminal domain protein [Turicibacter sp. HGF1] Length = 570 Score = 240 bits (611), Expect = 9e-61, Method: Composition-based stats. Identities = 59/368 (16%), Positives = 127/368 (34%), Gaps = 25/368 (6%) Query: 420 DLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-E 478 + ++ +R+L ++GIL L + K + + + FL ++ F Sbjct: 215 EYVEEDTRYLNLKNGILRLSDLKLFKHSPSIITLSQLPVGYDLNAKCPNFLKYLNTVFEG 274 Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538 E + G L K Q+F G G +GKS L N+++ GN ++ + Sbjct: 275 DCERISLVQEVFGYCLTTDTKLQKFFIFYGNGSNGKSVLANIMRKVIGNDNCSSSTLEQL 334 Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNEN-DEINAAKIKQMTGGDCMTARLNYGNTY 597 + + + R+ I E++ + + +N ++K +TG D + + N Sbjct: 335 SKQFGGQV---------IQDKRVNISGESDSSRNVLNTQQLKLITGEDMVQVESKFKNP- 384 Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN-----------RDASFAQK 646 ++ N + + D + RR + IPF+ +D K Sbjct: 385 IMIRPYVKLIVLSNHYPKTEDTSDGFLRRCLFIPFNMRFVEEGTKLKDKEAYKDKDLQSK 444 Query: 647 LETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGEN 706 L+ W L+G + + + + ++ + + +I D + Sbjct: 445 LD-SELDGIFMWALQGYQRLKDQNYVLTQCTASDRVLKDFMIYNNPVKEFIMDFLVVCPG 503 Query: 707 LWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRII 766 E + +Y + ++ IS + + + +++ R I Sbjct: 504 NRELKTDIYDAYQGWCKRNNVRSGLNISAKEFWGEF-ARSITVFTNYQYQQQKSNGDRYI 562 Query: 767 KGLKLKPA 774 LK+K A Sbjct: 563 CNLKIKGA 570 >gi|291437234|ref|ZP_06576624.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] gi|291340129|gb|EFE67085.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] Length = 527 Score = 239 bits (610), Expect = 1e-60, Method: Composition-based stats. Identities = 62/446 (13%), Positives = 143/446 (32%), Gaps = 25/446 (5%) Query: 335 KKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQ 394 ++ + + W+ T + + + + + + R W T + Sbjct: 92 RRWRGSWMRWTGTCWREWDE--AQMRAYMYERLEHATFSTPGKDGQPEVRDWAPTKQKIS 149 Query: 395 NVEENSKAKSTA--QSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYI 452 N+ + A + + I + D S + ++G+L + + + Sbjct: 150 NLLDALGAVTLLPTDTDAPAWIDDDRASEQDRSP-IVACRNGLLRIRDRALLPHGPGFFN 208 Query: 453 TKSTGTPFVEGEPSQEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGG 511 S + + + + + + + G L G Q+ + I G Sbjct: 209 IVSVPFAYDPEATAPTWERFLRQIWPNDPDAIQALQEWFGYVLSGRTDQQKILLIVGPSR 268 Query: 512 SGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEND 571 SGK T+ ++K G + + + + N L L+G + +IS+ + Sbjct: 269 SGKGTIARVLKELVGKENLAGPTLAGL---------GTNFGLSTLVGKPLAVISDARLSG 319 Query: 572 EINAA---KIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYI 628 N+ ++ ++G D + Y ++ + I+ N+ + + RR++ Sbjct: 320 NDNSQVVERLLTISGEDTIDVDRKYREVWTGKLPT-RLMILSNELPYFGDSSGVIARRFV 378 Query: 629 VIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQ 688 V+ ++ + W L G+ + G + P +A + Sbjct: 379 VLNMTVSWLGKEDTTLTDRLAAEMPGILNWALDGLARLETTG-RITEPACSREAVTTMQD 437 Query: 689 GTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFI 748 A+I +CC G +L + E+ E R + + NL + Sbjct: 438 TASPTSAFIRECCITGPTCSVPVDTLWAVWREWAEDNG--VRAVGTKQMFGRNL--LSVV 493 Query: 749 GGIKREKIE-KEWKSKRIIKGLKLKP 773 + R + + G+ LKP Sbjct: 494 PQLHRTRPRDAYGRQVATYNGIALKP 519 >gi|168211076|ref|ZP_02636701.1| phage/plasmid primase domain, P4 family [Clostridium perfringens B str. ATCC 3626] gi|170710872|gb|EDT23054.1| phage/plasmid primase domain, P4 family [Clostridium perfringens B str. ATCC 3626] Length = 995 Score = 239 bits (609), Expect = 2e-60, Method: Composition-based stats. Identities = 59/383 (15%), Positives = 130/383 (33%), Gaps = 28/383 (7%) Query: 396 VEENSKAKSTAQSLEAGSIFSITSD--LLDSSSRFLGEQDGILDLETGQKVKPTKELYIT 453 + N ++ + ++ D + + + ++G+LD+ + T T Sbjct: 628 MLPNYCIMASIRDCRDQWDILVSKDFDDFNRNPYLVNVRNGLLDIRDMSFKEHTPSYLST 687 Query: 454 KSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSG 513 + +F ++ +++ VG L +Q+ G +G Sbjct: 688 VQLNVEYNPQVDCPQFKKFLNEVL-DCKLIPLVQEIVGYLLTTNTASQKAFVFWGPARTG 746 Query: 514 KSTLMNLIKYAF-GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDE 572 KSTL+ +++Y G + V N +I L+G + S+ Sbjct: 747 KSTLLWVVEYLLLGKKNVSNIPWQEIGDK---------FKTAELLGKLANVFSDLPSKSI 797 Query: 573 INAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVR-NPDDAWWRRYIVIP 631 + K +TG D + A N + N+ + + ++RR I++P Sbjct: 798 DDTGIFKVVTGEDYLMAEKKNKNPFKF-KPFARLVFSCNELPRNYVDRTEGFYRRLIIVP 856 Query: 632 FDKPIANR--DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQG 689 F + I D + K + W L+G+K + E+ K+E ++ Sbjct: 857 FSRQIEKSKIDKALKYKFQR-EKEGILNWALEGLKRLYENNFEFSENELTDGVKKEYKRE 915 Query: 690 TDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIG 749 + +++++CC+I + ++Y E+ + K +S L+ Sbjct: 916 NNNVISFVEECCEIDGLFSCSRIEIYEAYKEFCVEAG---LKALSQIKFNKELEGN---- 968 Query: 750 GIKREKIEKEWKSKRIIKGLKLK 772 R G+++K Sbjct: 969 ---FNITRSRSGKLRSWNGVRIK 988 >gi|239928907|ref|ZP_04685860.1| Phage/plasmid primase P4-like protein [Streptomyces ghanaensis ATCC 14672] Length = 469 Score = 239 bits (608), Expect = 2e-60, Method: Composition-based stats. Identities = 62/446 (13%), Positives = 141/446 (31%), Gaps = 25/446 (5%) Query: 335 KKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQ 394 ++ + + W+ T + + + + + + R W T + Sbjct: 34 RRWRGSWMRWTGTCWREWDE--AQMRAYMYERLEHATFSTPGKDGQPEVRDWAPTKQKIS 91 Query: 395 NVEENSKAKSTA--QSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYI 452 N+ + A + + I + D S + ++G+L + + + Sbjct: 92 NLLDALGAVTLLPTDTDAPAWIDDDRASEQDRSP-IVACRNGLLRIRDRALLPHGPGFFN 150 Query: 453 TKSTGTPFVEGEPSQEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGG 511 S + + + + + + + G L G Q+ + I G Sbjct: 151 IVSVPFAYDPEATAPTWERFLRQIWPNDPDAIQALQEWFGYVLSGRTDQQKILLIVGPSR 210 Query: 512 SGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEND 571 SGK T+ ++K G + + N L L+G + +IS+ + Sbjct: 211 SGKGTIARVLKELVGKENLAGPTL---------AGLGTNFGLSTLVGKPLAVISDARLSG 261 Query: 572 EINAA---KIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYI 628 N+ ++ ++G D + Y ++ + I+ N+ + + RR++ Sbjct: 262 NDNSQVVERLLTISGEDTIDVDRKYREVWTGKLPT-RLMILSNELPYFGDSSGVIARRFV 320 Query: 629 VIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQ 688 V+ ++ + W L G+ + G + P +A + Sbjct: 321 VLNMTVSWLGKEDTTLTDRLAAEMPGILNWALDGLARLETTG-RITEPACSREAVTTMQD 379 Query: 689 GTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFI 748 A+I +CC G +L + E+ E R + + NL + Sbjct: 380 TASPTSAFIRECCITGPTCSVPVDTLWAVWREWAEDNG--VRAVGTKQMFGRNL--LSVV 435 Query: 749 GGIKREKIE-KEWKSKRIIKGLKLKP 773 + R + + G+ LKP Sbjct: 436 PQLHRTRPRDAYGRQVATYNGIALKP 461 >gi|158522921|ref|YP_001530791.1| P4 family phage/plasmid primase [Desulfococcus oleovorans Hxd3] gi|158511747|gb|ABW68714.1| phage/plasmid primase, P4 family [Desulfococcus oleovorans Hxd3] Length = 769 Score = 238 bits (607), Expect = 2e-60, Method: Composition-based stats. Identities = 81/571 (14%), Positives = 162/571 (28%), Gaps = 65/571 (11%) Query: 216 CFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFE 275 + + + I A H+ +R + ++A + Y ++ ++ + Sbjct: 248 RIPDLRISDKMKDLILSGGAGHYSSRSEA---DMAVILALVSKGYSDDEIRSIFENYPRG 304 Query: 276 EIGDTAKKRSTF-TSLFYHHGKLIPKGLLASRFSDA------YNKAMFSIYKKGHFLY-- 326 S + K L +D K + YK F + Sbjct: 305 AKYLEHSDPSQYLNHNIKEAKK--ISNLTEEEMADPLFISGTITKNKNNEYKLDVFCFEE 362 Query: 327 --TADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPR 384 + + Y D+ + + ++ + Sbjct: 363 YFSKKHQLKYLADETSFFKYNGQCYEYI-------------------------NKDTLNA 397 Query: 385 FWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKV 444 R++ + S +++ D Q+G+ DL+ G V Sbjct: 398 ECQKELGRKRKLFTTKDLSSFEHHCIGDPQCILSNANQDQVKYL-TLQNGLFDLDQGVLV 456 Query: 445 KPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRF 503 + + + T + E +L + F ++ + + +G L Sbjct: 457 HHSPDTFTTNLLPYDYDELAQCPLWLKYLDDVFMGDQDKIMFAQEAIGYVFLKQIPTPAL 516 Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVI 563 ++G G +GKS +N I FG + V + + L G I Sbjct: 517 FFLKGTGSNGKSVFINTITNLFGEENVASISLGSFSKEYYTLG---------LFGKMANI 567 Query: 564 ISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAW 623 E N ++ +K + GD + R Y + FI N+ + W Sbjct: 568 SGEAP-NKFLSTDVVKAIVSGDWVQGRDPYKRPT-KFRPYAKHFIAMNEEPATDDNSYGW 625 Query: 624 WRRYIVIPFDKPIANRDAS-FAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKA 682 WRR V+ F++ + F W + G G + E +A Sbjct: 626 WRRIYVLKFERTFHKHEMDVFLTDKLKNELSGIFNWAIAGYHRLKENGYILHTGESLEQA 685 Query: 683 KEEERQGTDTYQAWIDDCCDI--GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTL 740 K + + ++I C + + L Y Y E +S + Sbjct: 686 KYNYQCQNNNVISFIKKKCAKAQATDNYILFKDLYHLYCAYCESNGA---DVLSKKDFRK 742 Query: 741 NLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771 L+ G+ K + K S + G+ L Sbjct: 743 TLENSGY----KVDNNTKASNSL-CVYGIAL 768 >gi|239908831|ref|YP_002955573.1| hypothetical protein DMR_41960 [Desulfovibrio magneticus RS-1] gi|239798698|dbj|BAH77687.1| hypothetical protein [Desulfovibrio magneticus RS-1] Length = 478 Score = 238 bits (606), Expect = 3e-60, Method: Composition-based stats. Identities = 79/435 (18%), Positives = 162/435 (37%), Gaps = 29/435 (6%) Query: 279 DTAKKRSTFTSLFYHHGKLIPKGLLASRF---------SDAYNKAMFSIYKKGHFLYTAD 329 + ++ S + K S F ++ + + K F Y Sbjct: 6 NNVSNKAILASSVKANKKNPKMTKNGSDFLDIDKLLQKNEVGDAGFYVEANKNKFCYDCS 65 Query: 330 TKAWYKKDKNNVYIW-SLTLDKITASIMNFLVSMKEDVFDLS-EEPEDNNKNSKS--PRF 385 K WYK + + I + + + +++ +K + +E N + Sbjct: 66 DKKWYKYNNTHWEIDVKNSYLEAVSKVVDAYEDIKSIFRAKAFKEMAFENSHGVKAVDAH 125 Query: 386 WFNTDYRRQNVEENSKAKSTAQSLEAGS-IFSITSDLLDSSSRFLGEQDGILDLETGQKV 444 D+R ++ + +S +G +I D D+ L Q+ ++DL+TG+ + Sbjct: 126 LKKLDFRISSINTMKRMRSILTIAGSGENSLAIRGDEWDNKPMVLCCQNKVIDLKTGKSI 185 Query: 445 KPTKELYITKSTGTPFVE-GEPSQEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQR 502 K + Y+ + + + + F+ +E++DY R +G +L G Sbjct: 186 KSDPKDYLKSFAPVEWKGLSCKAPIWNKFLMSMFDNDKEMVDYVLRLLGYSLTGMCTEHI 245 Query: 503 FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIV 562 G G +GK TL ++ G+ + + +P + +P ++ L G RI Sbjct: 246 LPIFYGEGRNGKGTLFEVLSEVLGSLAEPFSHDLLLKLKKPRNSSDPSPDIMDLRGRRIA 305 Query: 563 IISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDA 622 SE ++++ +N A +K++TG D + R +G+ + F++ NK + D A Sbjct: 306 WASEIDDSENLNPAIVKRLTGNDTLKGRHLFGDL-VSFKPTHQLFLLTNKKPKADSKDYA 364 Query: 623 WWRRYIVIPFDKPIAN---------RDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDV 673 W R ++ + + RD +KL ++G + +GL Sbjct: 365 LWSRIQLLKLNVKFVDNPSCDSERKRDNHLKEKL-LSEKSGILASLVRGCLQWQEQGLCP 423 Query: 674 DIPEVCLKAKEEERQ 688 P+ L E R+ Sbjct: 424 --PKKVLDDSLEYRK 436 >gi|71911262|ref|YP_282812.1| DNA primase [Streptococcus pyogenes MGAS5005] gi|94989081|ref|YP_597182.1| DNA primase [Streptococcus pyogenes MGAS9429] gi|94992972|ref|YP_601071.1| DNA primase [Streptococcus pyogenes MGAS2096] gi|71854044|gb|AAZ52067.1| DNA primase [Streptococcus pyogenes MGAS5005] gi|94542589|gb|ABF32638.1| DNA primase [Streptococcus pyogenes MGAS9429] gi|94546480|gb|ABF36527.1| DNA primase [Streptococcus pyogenes MGAS2096] Length = 794 Score = 237 bits (604), Expect = 5e-60, Method: Composition-based stats. Identities = 70/448 (15%), Positives = 155/448 (34%), Gaps = 28/448 (6%) Query: 337 DKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKS------PRFWFNTD 390 D + + + + ++V + E ++K + + Sbjct: 366 DDRSWLEIDE-RGEPEVNSYLLATQIIKEVPIYWDGLEFLRYDAKKGIWLPNAEEYLKSY 424 Query: 391 YRRQNVEENSKAKSTAQSLEAGSIFSITSDLL-DSSSRFLGEQDGILDLETGQKV-KPTK 448 + + + +K + ++++ A + +S++ +S + +G+ DL K Sbjct: 425 ISTKKLGKITKIRHISETVVAIKAQAFSSEVFTESDLNKIVLANGVYDLRDNNFKTKFDP 484 Query: 449 ELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRG 508 EL+ S + + F + E +D+ G Q+ + I G Sbjct: 485 ELHARSSHPVVYDPEATCETFEGFLRETVG-AENIDFIFEWFGYNFYREYTIQKMLFIYG 543 Query: 509 VGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN 568 GG+GKSTL+N+++ G +MQ R + G L ++ Sbjct: 544 SGGTGKSTLINILREMIGADNYSAVTLQYLMQERFAKIG--------LYRKTANFDTDAK 595 Query: 569 ENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYI 628 + A +K +TG D + A N+ +R+ RR + Sbjct: 596 PQYLADGAALKMLTGEDTIHADRKNKEP-INFYNYAKLSFAMNELPPMRDFSGGLKRRMM 654 Query: 629 VIPFDKPIANR-DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEER 687 ++ DK + A + ++G++ +SK D I + E+ Sbjct: 655 ILEMDKVLTQEVKAKYPLDKIMSEVPGIFNRAMEGLRKALSKR-DFSISASMRSSVEKWE 713 Query: 688 QGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGF 747 +G D +++D C++GE+ + +Y Y + K ++ L++ + Sbjct: 714 KGNDVVAMFLEDECELGEDFKVPVRDVYPAYKFYCQDSG---YKPLAKNAFNHRLRELNY 770 Query: 748 IGGIKREKIEKEWKSKRIIKGLKLKPAF 775 + ++ + K + G +LK F Sbjct: 771 EN----KNVKSDGKQAKNWVGFRLKSEF 794 >gi|212702690|ref|ZP_03310818.1| hypothetical protein DESPIG_00718 [Desulfovibrio piger ATCC 29098] gi|212673850|gb|EEB34333.1| hypothetical protein DESPIG_00718 [Desulfovibrio piger ATCC 29098] Length = 540 Score = 237 bits (603), Expect = 7e-60, Method: Composition-based stats. Identities = 85/514 (16%), Positives = 174/514 (33%), Gaps = 40/514 (7%) Query: 297 LIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWS-LTLDKITASI 355 L + + ++S +G +Y + ++ + + Sbjct: 39 SNDDLLGYFNENRVGDAKLYSRLHRGTVIYVKYWDRFLIWGGHHWIEDDFDMAAQRIEDV 98 Query: 356 MNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLE-AGSI 414 + + E + E D N+ +K R + + Q L Sbjct: 99 CELYLRLAESKQAEAAEETDKNERAKIEGLASAVLRRVSQLRDTPGQDKLLQMLRRIRDP 158 Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVE-----GEPSQEF 469 + +D +G++DL TG+ + YI + T + +P E Sbjct: 159 LVVLPKQIDQQHYVKACPNGVIDLRTGELRPGRPDEYILNAIVTEYDPELLRKDDPCPET 218 Query: 470 LDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGV-GGSGKSTLMNLIKYAFGN 527 + +E++D+ R +G L+ + F + G G +GK TL+ L+ + G Sbjct: 219 NRFLLSSMDGDQELVDFIWRLLGYGLITERRDHIFTIMWGEHGRNGKDTLIKLVTHVLGQ 278 Query: 528 QYVINAEASDIMQ-NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDC 586 + +Q + + +P ++ L G + I+E E AK+K++TGG Sbjct: 279 TLSGDVPVEMFLQMQQTRNSSAPSPDVLALRGMCVAWINEAEEGQRFALAKLKKLTGGGY 338 Query: 587 MTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR------- 639 +TAR + + P + N+ + D A+W R ++I + R Sbjct: 339 ITARGLQDKLQTTWLQTHLPIMTTNELPKAKADDAAFWARAVLIKWPLSFVERPEQPYER 398 Query: 640 --DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWI 697 D +K+ ++G Y+ GL IP+ + E+R D ++ Sbjct: 399 PADKDLNEKIG-AEAKGVLARMVRGSMEYLRDGLK--IPDKVREWTREQRASWDDVGLFL 455 Query: 698 DDCCDIGEN--------LWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIG 749 + C + L + L +++ + + + R IS + L +K Sbjct: 456 SEWCISESHQANPANYTLKVNATDLHEAFCIWYARYRD-RRYSISAKKFAEALNKKD--- 511 Query: 750 GIKREKIEKEWKSKRIIKGLKLKPAFESVDDNSN 783 I ++ W+ G+ L D+ Sbjct: 512 -IAYKRSNGSWR-----LGIDLTDEARKELDSHR 539 >gi|91214217|ref|NP_919008.2| DR0530-like primase [Burkholderia phage BcepNazgul] gi|88604910|gb|AAQ63375.2| DR0530-like primase [Burkholderia phage BcepNazgul] Length = 843 Score = 236 bits (602), Expect = 1e-59, Method: Composition-based stats. Identities = 106/722 (14%), Positives = 220/722 (30%), Gaps = 91/722 (12%) Query: 7 KEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGF---------- 56 + I NG+ ++P+ G+K P W++ + + K+ A G + Sbjct: 11 ADHGDALIANGYNIVPITPGEKFPPH-DGWQQTVATQAKLKTWLATGLKYTKNGEDRVAD 69 Query: 57 ----VCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEG 112 G + DID DE A ++ G VR+G+ P+ L+ FR + Sbjct: 70 VKLAGVGFLTKNTPGVDIDISDEGFAKHMENFVHENFGMAPVRVGRAPRRLLLFRCTEPF 129 Query: 113 IKKKKTTESTQGH----LDILGCGQYFVAYNIHPKTKKEYTWTT--PPHRFKVEDTPLLS 166 K + + ++IL GQ FVA++IHP TK+ Y W P + + P+L Sbjct: 130 SKVNSSVYLDEWGEAQKVEILANGQQFVAFHIHPDTKRPYEWLYKQSPLDIEASELPVLR 189 Query: 167 EEDVEYLFKFFQEITVPLV---KDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYN 223 D + + F++ K + P ++ + + GE+ + Sbjct: 190 RVDAQAIVDEFEKQAKLRGWTLKKRSRTAPERSESGGEIDYDDPFAADVAKTDIGEDELH 249 Query: 224 ---------GSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDF 274 ++ W+ V MA+ H+ G +G E+ WS+ YD + + KW +FD Sbjct: 250 AKLLLVPDADDYETWVNVGMALFHQYDGHERGLELWHEWSETADNYDAKELDAKWKSFDI 309 Query: 275 EEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWY 334 T L + + + + ++ Sbjct: 310 SNKSRTPITARYIIKLAKEAAEKTAEETMVALQKLLLEATSMNML--NSACKAIKKATLD 367 Query: 335 KKDKNNVYIW-SLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR 393 K + + + +I L + ++ + + E + K + D Sbjct: 368 KPSRELMVTFVRQAFKRINDGSPLPLNAARQMIRFENPESKHMPKWLMGWTYLTLDDKFY 427 Query: 394 QNVEENSKAKSTAQSLEAGSIF------------SITSDLLDSSSRFLGEQ--------- 432 + +S S + T++ L + + Sbjct: 428 NVNTQEYMTRSAFNSAFERFLLTPQDVLEGRVVPDTTAEKLALNRHQIPVCRTRLYLPEQ 487 Query: 433 ------DG--ILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMD 484 +G +L T + V + + + LD + ++ Sbjct: 488 DETFIMNGARYANLYTDKSVPECPSKLTS-------EDKLNVKRILDHFNMMIPADRERG 540 Query: 485 YFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544 F + + + I ++G GK+ +++ G + V A + Sbjct: 541 IFIDWLAWIIQTQKRPNWAIVLQGTESDGKTFFSDMMGVILGPENVKTLNAKTLEGAFNG 600 Query: 545 EAGKA---NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESP 601 A + I+L G N+ IK + + + Y+ Sbjct: 601 WAEGSLLNCVEEIKLHG--HNRFDVLNQ--------IKPLITNTAIEIHRKGVDPYNTIN 650 Query: 602 ASFTPFIVP--NKHLFVRNPDDAW--WRRYIVIPFDKPIANRDASFAQKLE--TKYTLEA 655 + + + VRN + + R + + + + L + A Sbjct: 651 TAAYLLLTNFKDALPLVRNDTRYFVMFGRMQNREDVEKFKDENPHYYGNLFQALNESAGA 710 Query: 656 KK 657 + Sbjct: 711 LR 712 >gi|21910978|ref|NP_665246.1| putative DNA primase/helicase - phage associated [Streptococcus pyogenes MGAS315] gi|28876472|ref|NP_795676.1| putative DNA primase/helicase [Streptococcus pyogenes phage 315.6] gi|28895335|ref|NP_801685.1| DNA primase (phage associated) [Streptococcus pyogenes SSI-1] gi|50913381|ref|YP_059353.1| virulence-associated protein E [Streptococcus pyogenes MGAS10394] gi|21905186|gb|AAM80049.1| putative DNA primase/helicase - phage-associated [Streptococcus pyogenes MGAS315] gi|28810581|dbj|BAC63518.1| putative DNA primase (phage associated) [Streptococcus pyogenes SSI-1] gi|50902455|gb|AAT86170.1| virulence-associated protein E [Streptococcus pyogenes MGAS10394] Length = 794 Score = 236 bits (601), Expect = 1e-59, Method: Composition-based stats. Identities = 70/448 (15%), Positives = 154/448 (34%), Gaps = 28/448 (6%) Query: 337 DKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKS------PRFWFNTD 390 D + + + + ++V + E ++K + + Sbjct: 366 DDRSWLEIDE-RGEPEVNSYLLATQIIKEVPIYWDGLEFLRYDAKKGIWLPNAEEYLKSY 424 Query: 391 YRRQNVEENSKAKSTAQSLEAGSIFSITSDLL-DSSSRFLGEQDGILDLETGQKV-KPTK 448 + + + +K + ++++ A + +S++ +S + +G+ DL K Sbjct: 425 ISTKKLGKITKIRHISETIVAIKAQAFSSEVFTESDLNKIVLANGVYDLRDNSFKTKFDP 484 Query: 449 ELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRG 508 E++ S + + F + E +D+ G Q+ + I G Sbjct: 485 EVHARSSHPVVYDPEATCETFEGFLRETVG-AENIDFIFEWFGYNFYREYTIQKMLFIYG 543 Query: 509 VGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN 568 GG+GKSTL+N+++ G +MQ R + G L ++ Sbjct: 544 SGGTGKSTLINILREMIGADNYSAVTLQYLMQERFAKIG--------LYRKTANFDTDAK 595 Query: 569 ENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYI 628 + A +K +TG D + A N+ +R+ RR + Sbjct: 596 PQYLADGATLKMLTGEDTIHADRKNKEP-INFYNYAKLSFAMNELPPMRDFSGGLKRRMM 654 Query: 629 VIPFDKPIANR-DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEER 687 ++ DK + A + ++G++ +SK D I + E+ Sbjct: 655 ILEMDKVLTQEVKAKYPLDKIMSEVPGIFNRAMEGLRKALSKR-DFSISASMRSSVEKWE 713 Query: 688 QGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGF 747 +G D +++D CD+ E+ + +Y Y + K ++ + T + + F Sbjct: 714 KGNDVVAMFLEDECDLSEDFKVPVRDVYPAYKFYCQDSG---YKPLARNSFTQRMNELNF 770 Query: 748 IGGIKREKIEKEWKSKRIIKGLKLKPAF 775 + + K+ R G ++K F Sbjct: 771 EN----KNAKMGGKTVRCWIGFRIKGEF 794 >gi|282164445|ref|YP_003356830.1| hypothetical protein MCP_1775 [Methanocella paludicola SANAE] gi|282156759|dbj|BAI61847.1| hypothetical protein [Methanocella paludicola SANAE] Length = 439 Score = 235 bits (600), Expect = 1e-59, Method: Composition-based stats. Identities = 73/424 (17%), Positives = 143/424 (33%), Gaps = 21/424 (4%) Query: 306 RFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKED 365 ++++A F + Y + + +W+ ++ N + Sbjct: 33 KYTEACMAHWFDFFYNKDVKYVVEDDRF--------LVWNGRYWELDDRNTNVRRLISLM 84 Query: 366 VFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSS 425 + E + T+ +N I + LD + Sbjct: 85 APEFQARTEHIKDEKARNAAFKYTNSLENTNRQNGIIIQLKSEATGLF---IKKNDLDKN 141 Query: 426 SRFLGEQDGILDLETGQKVKP--TKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEV 482 SR + +G+LDL+ G + TKE+Y T + F ++ E ++ Sbjct: 142 SRMINCLNGVLDLDKGTLIHHEQTKEMYFTHIYNVKYDPEAICPLFDKFLNEITCEDADL 201 Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542 Y +G + G Q +G G +GK L ++I++ + ++ Sbjct: 202 KKYLLTSLGYCISGRTDKQLAFIFKGAGRNGKGVLRDVIEHILDGYAIEKPGKVFSKKHE 261 Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602 G+ L + RI+ ++E + N A IKQ GGD + A Y + + Sbjct: 262 ----GEGRFDLYDTIEKRIIFVNEPADGSAFNEALIKQYAGGDMIPAERKYCDPFM-FKP 316 Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR-DASFAQKLETKYTLEAKKWFLK 661 T I+ N + N A RR VIPF+ I + D + K ++ Sbjct: 317 CGTLIILTNTTPKM-NKSLAMSRRIRVIPFNLNIDDENDDVELKDKLLKEISGILNRLIE 375 Query: 662 GVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEY 721 G + + ++ E A E+ D A+++ C E ++ + + ++ Sbjct: 376 GYMSCDGEANPKNMVEAVADATEDVWNEADMVAAFVNTCIFRDEKSTMDNAVMYLEFKKF 435 Query: 722 REQE 725 E Sbjct: 436 CMNE 439 >gi|157311152|ref|YP_001469197.1| primase [Streptococcus phage P9] gi|119104301|gb|ABL61046.1| primase [Streptococcus phage P9] Length = 497 Score = 235 bits (598), Expect = 3e-59, Method: Composition-based stats. Identities = 71/448 (15%), Positives = 155/448 (34%), Gaps = 28/448 (6%) Query: 337 DKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKS------PRFWFNTD 390 D + + + + ++V + E ++K + + Sbjct: 69 DDRSWLEIDE-RGEPEVNSYLLATQIIKEVPIYWDGLEFLRYDAKKGIWLPNAEEYLKSY 127 Query: 391 YRRQNVEENSKAKSTAQSLEAGSIFSITSDLL-DSSSRFLGEQDGILDLETGQKV-KPTK 448 + + + +K + ++++ A + +S++ +S + +G+ DL K Sbjct: 128 ISTKKLGKITKIRHISETIVAIKAQAFSSEVFTESDLNKIVLVNGVYDLRDNSFKTKFDP 187 Query: 449 ELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRG 508 EL+ S + + F + E +D+ G Q+ + I G Sbjct: 188 ELHARSSHPVAYAPEAACETFEGFLRETVG-AENIDFIFEWFGYNFYREYTIQKMLFIYG 246 Query: 509 VGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN 568 GG+GKSTL+N+++ G +MQ R + G L ++ Sbjct: 247 SGGTGKSTLINILREMIGADNYSAVTLQYLMQERFAKIG--------LYRKTANFDTDAK 298 Query: 569 ENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYI 628 + A +K +TG D + A N+ +R+ RR + Sbjct: 299 PQYLADGATLKMLTGEDTIHADRKNKEP-INFYNYAKLSFAMNELPPMRDFSGGLKRRMM 357 Query: 629 VIPFDKPIANR-DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEER 687 ++ DK + A + ++G++ +SK D I + E+ Sbjct: 358 ILEMDKVLTQEVKAKYPLDKIMSEVPGIFNRAMEGLRNALSKR-DFSISASMRSSVEKWE 416 Query: 688 QGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGF 747 +G D +++D C++GE+ + +Y Y + K ++ + T + + F Sbjct: 417 KGNDVVAMFLEDECELGEDFKVPVRDVYPAYKFYCQDSG---YKPLARNSFTQRMNELNF 473 Query: 748 IGGIKREKIEKEWKSKRIIKGLKLKPAF 775 + + K+ R G ++K F Sbjct: 474 EN----KNAKMGGKTVRCWIGFRIKGEF 497 >gi|46580593|ref|YP_011401.1| primase [Desulfovibrio vulgaris str. Hildenborough] gi|46450012|gb|AAS96661.1| primase, putative [Desulfovibrio vulgaris str. Hildenborough] gi|311234328|gb|ADP87182.1| phage/plasmid primase, P4 family [Desulfovibrio vulgaris RCH1] Length = 830 Score = 235 bits (598), Expect = 3e-59, Method: Composition-based stats. Identities = 64/479 (13%), Positives = 152/479 (31%), Gaps = 60/479 (12%) Query: 305 SRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKE 364 + + + + + Y + Y +++W+ +I Sbjct: 398 ANGRFTFRERILADY------LCQENPMMYHDKSGQLFVWNGKHFEIY------------ 439 Query: 365 DVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDS 424 + + R N + S A ++ A L+ Sbjct: 440 -------------SDEQLKRRAINALGEEATAARVASCSSLAMTMSAIPH----GRSLND 482 Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEG--EPSQEFLDLVSGYFESEEV 482 +L ++G+L++ T + ++ T + + +L ++ ++E Sbjct: 483 RDDWLCIENGMLNVTTLELAPHDRDYLATIMLPVRYDSETTPKPERWLTFLAETIQTEGP 542 Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542 + +G L K + + + G G GKS ++ +++ G + + Sbjct: 543 IAQLQEFMGYCLTRQTKFDKCLLLLGPGSDGKSKVIKVLRAMVGEANCSAVSMTGLEDQF 602 Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602 A L G + + +E + + K + GD + A + +++ E Sbjct: 603 QRSA---------LFGKLLNVGTEV-TTAALESEYFKAIVTGDPIQASFKHKDSF-EFTP 651 Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLE---TKYTLEAKKWF 659 NK V + D ++RR + I F + D + LE +W Sbjct: 652 CVKLVYAANKLPRVMDNSDGYFRRILPIQFKRQFLENDPAMDPDLEGKLMAELDGIFEWA 711 Query: 660 LKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYS 719 L G+ +++G + + + R+ + ++ D C I +N + L + Sbjct: 712 LVGLHRLLAQG-RFTMCDETRDILMDYRRFNNPVLGFVQDRCTITDNTRTDIKDLYADFK 770 Query: 720 EYREQELNYDRKRISTRTVTLNLK---QKGFIGGIKREKIEKEWKSKR--IIKGLKLKP 773 Y + K+++ L+ +K R + R +++ + L P Sbjct: 771 RYASENG---FKQLNRENFMRELETAARKVREDAAVRVTRPRAANGARPYLVENITLNP 826 >gi|225871340|ref|YP_002747287.1| phage DNA primase/helicase protein [Streptococcus equi subsp. equi 4047] gi|225700744|emb|CAW95385.1| putative phage DNA primase/helicase protein [Streptococcus equi subsp. equi 4047] Length = 794 Score = 234 bits (597), Expect = 4e-59, Method: Composition-based stats. Identities = 71/448 (15%), Positives = 154/448 (34%), Gaps = 28/448 (6%) Query: 337 DKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKS------PRFWFNTD 390 D + + + + ++V + E ++K + + Sbjct: 366 DDRSWLEIDE-RGEPEVNSYLLATQIIKEVPIYWDGLEFLRYDAKKGIWLPNAEEYLKSY 424 Query: 391 YRRQNVEENSKAKSTAQSLEAGSIFSITSDLL-DSSSRFLGEQDGILDLETGQKV-KPTK 448 + + + +K + ++++ A + +S++ +S + +G+ DL K Sbjct: 425 ISTKKLGKITKIRHISETVVAIKAQAFSSEVFTESDLNKIVLANGVYDLRDNSFKTKFDP 484 Query: 449 ELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRG 508 EL+ S + + F + E +D+ G Q+ + I G Sbjct: 485 ELHARSSHPVVYDPEAACETFEGFLRETVG-AENIDFIFEWFGYNFYREYAIQKMLFIYG 543 Query: 509 VGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN 568 GG+GKSTL+N+++ G +MQ R + G L ++ Sbjct: 544 SGGTGKSTLINILREMIGADNYSAVTLQYLMQERFAKIG--------LYRKTANFDTDAK 595 Query: 569 ENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYI 628 + A +K +TG D + A N+ +R+ RR + Sbjct: 596 PQYLADGATLKMLTGEDTIHADRKNKEP-INFYNYAKLSFAMNELPPMRDFSGGLKRRMM 654 Query: 629 VIPFDKPIANR-DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEER 687 ++ DK + A + ++G++ +SK D I + E+ Sbjct: 655 ILEMDKVLTQEVKAKYPLDKIMSEVPGIFNRAMEGLRKALSKR-DFSISASMRSSVEKWE 713 Query: 688 QGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGF 747 +G D +++D C++GE+ + +Y Y + K ++ L++ + Sbjct: 714 KGNDVVAMFLEDECELGEDFKVPVRDVYPAYKFYCQDSG---YKPLAKNAFNHRLRELSY 770 Query: 748 IGGIKREKIEKEWKSKRIIKGLKLKPAF 775 + ++ K + G KLK F Sbjct: 771 EN----KNVKSGGKQAKNWVGFKLKSEF 794 >gi|219855934|ref|YP_002473056.1| hypothetical protein CKR_2591 [Clostridium kluyveri NBRC 12016] gi|219569658|dbj|BAH07642.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 484 Score = 234 bits (597), Expect = 4e-59, Method: Composition-based stats. Identities = 72/472 (15%), Positives = 156/472 (33%), Gaps = 32/472 (6%) Query: 322 GHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEP-EDNNKNS 380 + LY + I ++ + MNF+ K +++ + ++++ Sbjct: 19 NNKLYDIHNNLLRSSKDPRINIENVK--NMIMKKMNFINMDKLRIYEFTAGCYRALSRDN 76 Query: 381 KSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLE- 439 ++ E S + +++ +L+ + + +G+LD Sbjct: 77 TLIEINKYIPNNIRSFIEPSDLRKLYEAIRLEPSIQFNPELVPDNKYLINCHNGVLDFNT 136 Query: 440 ----TGQKVKPTKELYITKSTGTPFVEGEPSQE--FLDLVSGYF-ESEEVMDYFTRCVGM 492 + + + F + +++ +G Sbjct: 137 LSNGKPIIMYHNEIYRFINCVQANYNPNYSINNSYFERFIVNITKGDNQLIILIQEILGY 196 Query: 493 ALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS 552 N A++ + G SGKS + +I G + V N ++ + Sbjct: 197 IFSNFNNAKKAFILFGESNSGKSVFLRVIASICGEENVSNVPLQNLSDEK---------Y 247 Query: 553 LIRLMGSRIVIISETNENDEINAAKIKQMTGG-DCMTARLNYGNTYSESPASFTPFIVPN 611 + +L G I I SE + + I+ A K + D + AR + +S N Sbjct: 248 VAKLYGKLINIYSELPDKEIIDTATFKSLVSETDKVNARKLFKAPFS-FYNKCKLIFATN 306 Query: 612 KHLFVRNPDD----AWWRRYIVIPFDKPIAN--RDASFAQKLETKYTLEAKKWFLKGVKA 665 ++ P A++ R I+IPF I +D + KL W + G+ Sbjct: 307 NLPEIKTPSYKDNLAFFNRLILIPFQVSIPENYQDKNLIYKLLY-EKDLIFSWAVDGLIR 365 Query: 666 YISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQE 725 YI G +++ ++I++ C + N + L +Y+EY + Sbjct: 366 YIKNGFKFSGCHASTSLLNSYMNNSNSMLSFINEMCLLDRNSYVHFDKLVGAYAEYCKNN 425 Query: 726 LNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFES 777 R + LKQK + +++ ++ +K +GL+L + Sbjct: 426 FLDTTTTKDKRQLKNILKQKY---KLIYKRLNRKDGNKYGFEGLRLLENHDD 474 >gi|153955539|ref|YP_001396304.1| hypothetical protein CKL_2924 [Clostridium kluyveri DSM 555] gi|146348397|gb|EDK34933.1| Phage-related protein [Clostridium kluyveri DSM 555] Length = 472 Score = 234 bits (596), Expect = 5e-59, Method: Composition-based stats. Identities = 72/472 (15%), Positives = 156/472 (33%), Gaps = 32/472 (6%) Query: 322 GHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEP-EDNNKNS 380 + LY + I ++ + MNF+ K +++ + ++++ Sbjct: 7 NNKLYDIHNNLLRSSKDPRINIENVK--NMIMKKMNFINMDKLRIYEFTAGCYRALSRDN 64 Query: 381 KSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLE- 439 ++ E S + +++ +L+ + + +G+LD Sbjct: 65 TLIEINKYIPNNIRSFIEPSDLRKLYEAIRLEPSIQFNPELVPDNKYLINCHNGVLDFNT 124 Query: 440 ----TGQKVKPTKELYITKSTGTPFVEGEPSQE--FLDLVSGYF-ESEEVMDYFTRCVGM 492 + + + F + +++ +G Sbjct: 125 LSNGKPIIMYHNEIYRFINCVQANYNPNYSINNSYFERFIVNITKGDNQLIILIQEILGY 184 Query: 493 ALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS 552 N A++ + G SGKS + +I G + V N ++ + Sbjct: 185 IFSNFNNAKKAFILFGESNSGKSVFLRVIASICGEENVSNVPLQNLSDEK---------Y 235 Query: 553 LIRLMGSRIVIISETNENDEINAAKIKQMTGG-DCMTARLNYGNTYSESPASFTPFIVPN 611 + +L G I I SE + + I+ A K + D + AR + +S N Sbjct: 236 VAKLYGKLINIYSELPDKEIIDTATFKSLVSETDKVNARKLFKAPFS-FYNKCKLIFATN 294 Query: 612 KHLFVRNPDD----AWWRRYIVIPFDKPIAN--RDASFAQKLETKYTLEAKKWFLKGVKA 665 ++ P A++ R I+IPF I +D + KL W + G+ Sbjct: 295 NLPEIKTPSYKDNLAFFNRLILIPFQVSIPENYQDKNLIYKLLY-EKDLIFSWAVDGLIR 353 Query: 666 YISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQE 725 YI G +++ ++I++ C + N + L +Y+EY + Sbjct: 354 YIKNGFKFSGCHASTSLLNSYMNNSNSMLSFINEMCLLDRNSYVHFDKLVGAYAEYCKNN 413 Query: 726 LNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFES 777 R + LKQK + +++ ++ +K +GL+L + Sbjct: 414 FLDTTTTKDKRQLKNILKQKY---KLIYKRLNRKDGNKYGFEGLRLLENHDD 462 >gi|189916734|gb|ACE62875.1| phage-related protein FY0076 [Xylella fastidiosa] Length = 297 Score = 232 bits (592), Expect = 1e-58, Method: Composition-based stats. Identities = 70/304 (23%), Positives = 123/304 (40%), Gaps = 33/304 (10%) Query: 464 EPSQEFLDLVSGYFESE-----EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLM 518 P+ EF+ ++ E + + R G G + Q+F + G G +GKSTL+ Sbjct: 1 APAPEFITTLARITCEEGEASKPLCAFLQRWFGYCATGEVREQKFAVLYGDGNNGKSTLL 60 Query: 519 NLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKI 578 +LI G + A + P+ A + L G R+V E+ E + + + Sbjct: 61 DLITGILGRYSGVAAPG-LLTGKNGPQHPNA---IADLAGRRMVTTHESGEGEVLREDFV 116 Query: 579 KQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA- 637 KQ TGGD + AR YG + E + ++ N ++ D WRR ++IPF Sbjct: 117 KQATGGDTLKARYLYGE-FFEFKPTHKLQLLTNHKPVIKGQDSGIWRRIMLIPFKAKFDA 175 Query: 638 -----------NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEE 686 RD A+KL W + G + GL P++ L A E+ Sbjct: 176 AEGEEIGNGKYPRDMRIAEKL-AAEREGVLAWIVAGAVEWYKNGLRP--PDIVLAASEDY 232 Query: 687 RQGTDTYQAWIDDCCDIGENLWEESHS-----LAKSYSEYREQELNYDRKRISTRTVTLN 741 ++ D +ID+ C++G E+ + L +Y+++ + +S Sbjct: 233 KEEQDRVGQFIDEECELGVEKEEKLSTPMGGGLYPAYTQWCKASG---VCALSKVRFLGG 289 Query: 742 LKQK 745 L+++ Sbjct: 290 LERR 293 >gi|291289516|emb|CBH29173.1| BA71V-C962R [African swine fever virus E75] Length = 669 Score = 232 bits (592), Expect = 1e-58, Method: Composition-based stats. Identities = 95/636 (14%), Positives = 204/636 (32%), Gaps = 69/636 (10%) Query: 207 NREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGS-TYD---E 262 + Y + W VV A+ + S+ + +A +S++ ++ + Sbjct: 6 EARYLHKILNLLPPEYYVEYPLWSNVVFALANT---SANYRPLAEWFSQKCPEKWNTGGK 62 Query: 263 ENFNYKWDTFDFEEIGDTAKK---RSTFTSLFYHHGKLIPKGLLASRFSDAY-------- 311 E W+ K+ + +++ +G + Y Sbjct: 63 EKLEKLWNDASRHTEKKITKRSIMYWAHKHAPQQYKEIVEQGYFSILAEYVYSYNGMLEH 122 Query: 312 ---NKAMFSIYKKGHFLYTADTKA--WYKKDKNNVYIWSLTLDK-------------ITA 353 K ++++ + W++ + + K I+ Sbjct: 123 YMIAKVIYAMMGNKFVVDVDSNGKYVWFEFVLPGQPMNQGEIWKWRKEVNPDELHIYISE 182 Query: 354 SIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGS 413 + + + E + +P + N + + + + + +S K + E Sbjct: 183 NFSRVMDRITEHIKYHLSQPHETNILNYYKKLLKAFERSKSKIFNDSFKKGVIRQAEFLF 242 Query: 414 IFSITSDLLDSSSRFLGEQDGILDLE--TGQKVKPTKELYITKSTGTPFVEGEPSQEF-- 469 LD++ LG +G+L +E + + E I + T +V P + Sbjct: 243 RQRSFIQTLDTNPHLLGVGNGVLSIETIPAKLINHFHEHPIHQYTHICYVPFNPENPWTK 302 Query: 470 --LDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 L+ + + + + A+ G K + G G +GK+ LM L+ G+ Sbjct: 303 LLLNALQDIIPELDARLWIMFYLSTAIFRGLKEALMLLWLGGGCNGKTFLMRLVAMVLGD 362 Query: 528 QYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCM 587 Y S + R A K N + +RL G ETN+++ +N +++K+M + Sbjct: 363 HYASKLNISLLTSCR-ETAEKPNSAFMRLKGRGYGYFEETNKSEVLNTSRLKEMVNPGDV 421 Query: 588 TARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYI----VIPFDKPI------- 636 TAR S + T N + + D WRR + F Sbjct: 422 TARELNQKQES-FQMTATMVAASNYNFIIDTTDHGTWRRLRHYRSKVKFCHNPDPGNPYE 480 Query: 637 ANRDASFAQKLET-----KYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTD 691 D F + +F + ++ + + E R+ D Sbjct: 481 KKEDPRFIHEYIMDPDCQNAFFSILVYFWEKLQKEYNGQIKKVFCPTIESETEAYRKSQD 540 Query: 692 TYQAWIDDCCDIGENLWEES--HSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIG 749 T +I + + + +Y+E+ +N R + L L Q+ Sbjct: 541 TLHRFITERVVESPSAETVYNLSEVVTAYAEWYNANINVKRH------IALELSQE-LEN 593 Query: 750 GIKREKIEKEWKSKRIIKGLKLKPAFESVDDNSNII 785 + + ++ RI+KG ++ FE++ + I Sbjct: 594 SVLEKYLQWSPNKTRILKGCRILHKFETLQPGESYI 629 >gi|120602099|ref|YP_966499.1| plasmid/phage primase [Desulfovibrio vulgaris DP4] gi|120562328|gb|ABM28072.1| plasmid/phage primase, P4 family [Desulfovibrio vulgaris DP4] Length = 828 Score = 231 bits (589), Expect = 3e-58, Method: Composition-based stats. Identities = 64/448 (14%), Positives = 141/448 (31%), Gaps = 52/448 (11%) Query: 327 TADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFW 386 + Y +++W+ +I + + R Sbjct: 411 CQENPMMYHDKSGQLFVWNGKHFEIY-------------------------SDEQLKRRA 445 Query: 387 FNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP 446 N + S A ++ A +D D +L ++G+L++ T + V Sbjct: 446 INALGDEATASRVASCSSLAMTMSAIPHGRSLNDRED----WLCIENGMLNVSTLELVPH 501 Query: 447 TKELYITKSTGTPFVEGEPS--QEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFI 504 ++ T + + +L + ++E + +G L K + + Sbjct: 502 DRDYLATIMLPVRYDSEATPKPERWLTFLGETIQTEGPIAQLQEFMGYCLTRQTKFDKCL 561 Query: 505 HIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVII 564 + G G GKS ++ +++ G + + A L G + + Sbjct: 562 LLLGPGSDGKSKVIKVLRAMVGEANCSAVSMTGLEDQFQRSA---------LFGKLLNVG 612 Query: 565 SETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWW 624 +E + + K + GD + A + +++ E NK V + D ++ Sbjct: 613 TEV-TTAALESEYFKAIVTGDPIQASFKHKDSF-EFTPCVKLVYAANKLPRVMDNSDGYF 670 Query: 625 RRYIVIPFDKPIANRDASFAQKLE---TKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLK 681 RR + I F + D + LE +W L G+ +++G + + Sbjct: 671 RRILPIQFKRQFLENDPAMDPDLESKLMAELDGIFEWSLVGLHRLLAQG-RFTMCDETRD 729 Query: 682 AKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLN 741 + R+ + ++ D C I EN + L + Y + K+++ Sbjct: 730 ILMDYRRFNNPVLGFVQDWCCITENTRTDIKDLYAQFKRYASENG---FKQLNRENFMRE 786 Query: 742 LK---QKGFIGGIKREKIEKEWKSKRII 766 L+ +K R + R Sbjct: 787 LETAARKVREDAAVRVTRPRSANGARPY 814 >gi|296446071|ref|ZP_06888020.1| phage/plasmid primase, P4 family [Methylosinus trichosporium OB3b] gi|296256430|gb|EFH03508.1| phage/plasmid primase, P4 family [Methylosinus trichosporium OB3b] Length = 578 Score = 231 bits (589), Expect = 4e-58, Method: Composition-based stats. Identities = 73/399 (18%), Positives = 139/399 (34%), Gaps = 31/399 (7%) Query: 387 FNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGIL---------- 436 R V + A+ A A +S S + Q+ L Sbjct: 172 RRLARWRFAVSSKNSARLVAMLKTAAPHLRREPGGFNSESMLIVTQNATLRVIVEEIGGK 231 Query: 437 -DLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALL 495 + + +E Y T F + ++ + S ++ + G+ L+ Sbjct: 232 KEARLDVRRGFAREDYATGLVPCDFDLMAKAAKWDAFLLRCLPSADMRRTVRQYAGLGLV 291 Query: 496 GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIR 555 G Q+ + G G +GKS + +I G Y ++ I+ AG+A+P ++R Sbjct: 292 G-TLLQKLMFHHGFGANGKSVFLAVISGVIGKSYGVSLPKETILGRGERGAGQASPDIVR 350 Query: 556 LMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLF 615 L G R V I E E++ + +K++TGGD M R + Y + TP + N Sbjct: 351 LFGKRFVRIDELKEDESLREDLVKRLTGGDEMAVRNLF-EGYFDFANRATPHMSGNGFPK 409 Query: 616 VRNPDDAWWRRYIVIPFDKPIANRDASFAQ---KLETKYTLEAKKWFLKGVKAYISKGLD 672 + D+ WRR +V+ + I + + W L GV Y+ GL Sbjct: 410 IDGTDNGIWRRMLVVHWSVTIPPEERREFDGFVAELLEERSGILNWLLDGVLDYLEHGL- 468 Query: 673 VDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKR 732 PE A + ++ + +I DC + E + + ++Y + ++ Sbjct: 469 FIAPE-IAAATSKYQEEMNPIGEFIKDCVEAHEGERVAASTAYQAYVSWSMAN---AKRA 524 Query: 733 ISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771 + + + +++ R +L Sbjct: 525 KTQTAFGREMAKL----------FKRDNDRARSYLDCRL 553 >gi|139473887|ref|YP_001128603.1| phage DNA primase/helicase protein [Streptococcus pyogenes str. Manfredo] gi|209559299|ref|YP_002285771.1| Putative DNA primase/helicase-phage associated [Streptococcus phage NZ131.2] gi|134272134|emb|CAM30379.1| putative phage DNA primase/helicase protein [Streptococcus pyogenes str. Manfredo] gi|209540500|gb|ACI61076.1| Putative DNA primase/helicase-phage associated [Streptococcus phage NZ131.2] Length = 794 Score = 231 bits (589), Expect = 4e-58, Method: Composition-based stats. Identities = 71/448 (15%), Positives = 154/448 (34%), Gaps = 28/448 (6%) Query: 337 DKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKS------PRFWFNTD 390 D + + + + ++V + E ++K + + Sbjct: 366 DDRSWLEIDE-RGEPEVNSYLLATQIIKEVPIYWDGLEFLRYDAKKGIWLPNAEEYLKSY 424 Query: 391 YRRQNVEENSKAKSTAQSLEAGSIFSITSDLL-DSSSRFLGEQDGILDLETGQKV-KPTK 448 + + + +K + ++++ A + +S++ +S + +G+ DL K Sbjct: 425 ISTKKLGKITKIRHISETVVAIKAQAFSSEVFTESDLNKIVLANGVYDLRDNSFKTKFDP 484 Query: 449 ELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRG 508 EL+ S + + F + E +D+ G Q+ + I G Sbjct: 485 ELHARSSHPVVYDPEAACETFEGFLRETVG-AENIDFIFEWFGYNFYREYAIQKMLFIYG 543 Query: 509 VGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN 568 GG+GKSTL+N+++ G +MQ R + G L ++ Sbjct: 544 SGGTGKSTLINILREMIGADNYSAVTLQYLMQERFAKIG--------LYRKTANFDTDAK 595 Query: 569 ENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYI 628 + A +K +TG D + A N+ +R+ RR + Sbjct: 596 PQYLADGATLKMLTGEDTIHADRKNKEP-INFYNYAKLSFAMNELPPMRDFSGGLKRRMM 654 Query: 629 VIPFDKPIANR-DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEER 687 ++ DK + A + ++G++ +SK D I + E+ Sbjct: 655 ILEMDKVLTQEVKAKYPLDKIMGEVPGIFNRAMEGLRKALSKR-DFSISASMGSSVEKWE 713 Query: 688 QGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGF 747 +G D +++D C++GE+ + +Y Y + K ++ L++ + Sbjct: 714 KGNDVVAMFLEDECELGEDFKVPVRDVYPAYKFYCQDSG---YKPLAKNAFNHRLRELNY 770 Query: 748 IGGIKREKIEKEWKSKRIIKGLKLKPAF 775 + ++ K + G KLK F Sbjct: 771 EN----KNVKSGGKQAKNWVGFKLKSEF 794 >gi|297569229|ref|YP_003690573.1| phage/plasmid primase, P4 family [Desulfurivibrio alkaliphilus AHT2] gi|296925144|gb|ADH85954.1| phage/plasmid primase, P4 family [Desulfurivibrio alkaliphilus AHT2] Length = 761 Score = 230 bits (587), Expect = 5e-58, Method: Composition-based stats. Identities = 68/443 (15%), Positives = 162/443 (36%), Gaps = 30/443 (6%) Query: 335 KKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQ 394 + ++ +I+ + ++ +K ++D + + + K ++ N + + Sbjct: 336 RFWQDQFFIYDGSAYHDESA-----NDIKAALYDFLADAKVVV-DGKLQKYKANRNRVGE 389 Query: 395 NVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITK 454 ++ A + A + A S + +S ++ +GIL L T + + P + Sbjct: 390 VLDALKAAVNLADRITAPSFIGNSGRD---ASEYIAAGNGILHLPTRELLPPDPAFFTRN 446 Query: 455 STGTPFVEGEPSQE-FLDLVSGYFES-EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGS 512 + + P +L ++ + E + +G L Q+ I G S Sbjct: 447 ALPFNYNHDAPPPAAWLQFLNSLWPDDPEAIKTLQEIMGYLLTSDTTQQKIFGIVGPMRS 506 Query: 513 GKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDE 572 GK T+ +I G V S + Q + L+G + IIS+ Sbjct: 507 GKGTIGRIITALLGQANVAGPTLSALSQQFG---------IASLIGKKAAIISDARLGSR 557 Query: 573 IN----AAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYI 628 + ++ ++G D ++ + N ++ I+ N+ + + A R++ Sbjct: 558 ADQAAITERLLAISGEDNISVPRKFLNDFTG-KMDVRFVILTNELPRLADSSGALANRFV 616 Query: 629 VIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQ 688 ++ + R+ K W L G++ S+G P +A +E Sbjct: 617 MLTMTQSFLGRERPGLTKDLLAELPSILNWALDGLERLTSRGY-FVQPASSREAMQELAD 675 Query: 689 GTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFI 748 + A++ D C++G+ L E L +++ ++ ++++ +++ + Sbjct: 676 LSSPIGAFVRDRCEVGQGLAVEVGLLYEAWKQWCNDHGR--EHPGTSQSFGRDIRAA--V 731 Query: 749 GGIKREKIEKEWKSKRIIKGLKL 771 GI ++ R+ +GL L Sbjct: 732 PGISTKQKRAGGDIIRVYEGLTL 754 >gi|205374882|ref|ZP_03227674.1| primase, putative [Bacillus coahuilensis m4-4] Length = 538 Score = 230 bits (586), Expect = 8e-58, Method: Composition-based stats. Identities = 86/525 (16%), Positives = 175/525 (33%), Gaps = 36/525 (6%) Query: 259 TYDEENFN---YKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSD--AYNK 313 + E K + F+ + + ++K ++ K + A++ Sbjct: 29 GFTPEEIEEQNKKVEEFETKHLIKVSEKDKKKMKVWETVLKDEKGNEFIGPINHTVAFDG 88 Query: 314 AMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEP 373 + T D K +I L + +N + S + Sbjct: 89 NEKVKFIPPFLQCTVDNKG-----NEREWISKGFLAEYLIENINAIYSGGLMYIYDNGVY 143 Query: 374 EDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQD 433 +N + + N+ S A + + ++S++ + ++ Sbjct: 144 RPILENEEKGIIKALLTPQFSNMNTVS---DVASQWKIDYRINKHPQEINSNNNMINLKN 200 Query: 434 GILDLETGQKVK----PTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRC 489 G+LD+ + K E T + +EF + ++V Sbjct: 201 GLLDISDNENWKFIKGHNPEHLSTIQIQANYNPEAKGKEFHKFLDSSVPDKQVQVLLQEM 260 Query: 490 VGMALLG-GNKAQRFIHIRGVGGSGKSTLMN-LIKYAFGNQYVINAEASDIMQNRPPEAG 547 VG L Q + G G SGKST +N ++ G+ + D+ N + Sbjct: 261 VGYCLTPFVTSKQMIFILTGQGDSGKSTFLNATLEALVGDNAKSHVALQDLDGNEYNQ-- 318 Query: 548 KANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPF 607 L G + I ++ + + +K TG D +TAR + + Sbjct: 319 ------AELFGKIVNIFADLPDKPLKDIGYLKAATGKDWITARRIRQAPF-QFKNKAKFV 371 Query: 608 IVPNKHL--FVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKA 665 N F ++ DA++ R +IPF++ I +D QKLE K W L+G++ Sbjct: 372 YSANDLPSNFSKDSTDAFYNRLTLIPFNQKITKKDPYLEQKLE-KEIDYIAYWALQGLQR 430 Query: 666 YISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQE 725 IS G + + K E ++ ++ ++++ C++ SL ++ + EQ Sbjct: 431 LISNGFKFSENQKSNELKAEYKKNSNPVMVFVEEYCELSSENETPRVSLWTAWQNFCEQN 490 Query: 726 LNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLK 770 + S NL G ++ + + KG++ Sbjct: 491 GHVA---GSQIKFNKNLTAL--YGEQIQQSQMNNSRRTKSWKGIR 530 >gi|332703042|ref|ZP_08423130.1| phage/plasmid primase, P4 family [Desulfovibrio africanus str. Walvis Bay] gi|332553191|gb|EGJ50235.1| phage/plasmid primase, P4 family [Desulfovibrio africanus str. Walvis Bay] Length = 572 Score = 230 bits (585), Expect = 8e-58, Method: Composition-based stats. Identities = 77/487 (15%), Positives = 178/487 (36%), Gaps = 42/487 (8%) Query: 300 KGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKI-----TAS 354 ++ + + + + L+ T ++ + + + Sbjct: 56 DEVVHDNLEEIGDARLVVKRWRNQLLFDNTTGEAFRFNCQRWLRDTNRCHQPRVAQLADP 115 Query: 355 IMNFLVSMKEDVFDLSEEPEDN-----------NKNSKSPRFWFNTDYRRQNVEENSKAK 403 + + E + + + F + R +N+ + Sbjct: 116 YKARAADLHQQALSKEAECQHGGCTREPKCLACQEADRIRGFKKAHENRAKNLCKLPHIN 175 Query: 404 STAQSLEAGSI-FSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPF-V 461 AG I+ + + + L ++ ++DLETG+ + + Y+ K++ + Sbjct: 176 KVWTLATAGEDSLGISGEEWERHTSLLVCKNCVVDLETGRSYQGRPDWYLYKASPVEYLG 235 Query: 462 EGEPSQEFLDLVSGY-FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGV-GGSGKSTLMN 519 + + DL+ + ++ +DY G + G + + F G + KST+ Sbjct: 236 LNVGCEFWDDLLWKVSCKDQDWIDYLGLVAGYSATGLSNYKDFYCAYGPLADNAKSTVYG 295 Query: 520 LIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIK 579 I+ A G+ + R + P ++RL R+ + E +N + IK Sbjct: 296 AIRAALGDYSETLPVELLLDGGRVKASSGPQPDIMRLRHLRMAVFDEAEQNHHFAMSAIK 355 Query: 580 QMTGG-DCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI-- 636 + +GG D ++AR YG P++ + N + D+ ++ R VIPF+ Sbjct: 356 RYSGGEDMISARGMYGKEQVTFPSTAKLHLHTNFIPKAKGNDEGFYNRLRVIPFEACFLL 415 Query: 637 --------ANRDASFAQKL--ETKYT----LEAKKWFLK---GVKAYISKGLDVDIPEVC 679 AN + ++ + + W ++ V I++G + +P+ Sbjct: 416 PGRTPPSGANPEHTYQAQPGVVKRELERCRPGILSWIVRNAVKVHKLIAEGKGLPLPDRV 475 Query: 680 LKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRI-STRTV 738 +A E R D ++ +CC +GE + L +Y ++ +E+ K+I + +T+ Sbjct: 476 REAVREYRNEQDMTGRFLRECCVVGEGA-TQMKDLYGAYRKWCIEEMQLTDKQIPTMKTL 534 Query: 739 TLNLKQK 745 +++K + Sbjct: 535 GMDVKNR 541 >gi|254518128|ref|ZP_05130184.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA] gi|226911877|gb|EEH97078.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA] Length = 553 Score = 229 bits (584), Expect = 1e-57, Method: Composition-based stats. Identities = 63/458 (13%), Positives = 151/458 (32%), Gaps = 25/458 (5%) Query: 293 HHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKIT 352 K + + DA + + +I + +Y +KN + + + Sbjct: 73 DIKKDQVQDEVEISIDDALVEELKTIVTNSKAIAL----GFYYDEKNKLRLNTNKCISYL 128 Query: 353 ASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSL--- 409 I F+ +K V + + E + N K + Sbjct: 129 RKIAEFI--IKHGVLMIYNQKEGIFQELN-DELMGTILRYLMNTAIPDSWKKVYERDIID 185 Query: 410 -EAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE 468 + + ++++D + +G+ ++ T + + K+ T + +++ Sbjct: 186 GLMREVPRVDTNIIDD--TLIAFNNGVYNVVTKKLLPHDKKYMFTSKSPIDYLKDADCPI 243 Query: 469 FLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 F + +E++ G AL+ KA+R GVG +GKS ++ G Sbjct: 244 FKKAIKEITCNDDELLSCLQEIFGNALINNTKAERAFFFTGVGSNGKSFCSEVLTEIVGV 303 Query: 528 QYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCM 587 V N + S + + ++ + I +E I+ +K + GD + Sbjct: 304 NNVSNIQLSKFSE---------RFGIEGIVSKTLNIANENELGGAISTENLKAIISGDTI 354 Query: 588 TARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKL 647 + ++ + N + ++R+ +++PF++ D K Sbjct: 355 NISRKFKQA-INYKSTIKLIFLLNTLPDTLDNTHGYYRKILIVPFNRVFKPEDIDKKLKE 413 Query: 648 ET-KYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGEN 706 + W L+G + I+ + + K + ++ + +A++++ E Sbjct: 414 KVCTELSGVLNWCLEGAERLINNDYNFTESKAIEKVTKAYKEEQNPVEAYLNEVLVYEEG 473 Query: 707 LWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQ 744 E ++ +Y + E E R S + L Sbjct: 474 SSETKKAVLDAYKSWIEGEGISARGSDSPQRFWRALNN 511 >gi|189916736|gb|ACE62876.1| phage-related protein FY0076 [Xylella fastidiosa] Length = 305 Score = 228 bits (581), Expect = 3e-57, Method: Composition-based stats. Identities = 66/283 (23%), Positives = 116/283 (40%), Gaps = 28/283 (9%) Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539 + + + R G G + Q+F + G G +GKSTL++LI G + A + Sbjct: 25 KPLCAFLQRWFGYCATGEVREQKFAVLYGDGNNGKSTLLDLITGILGRYSGVAAPG-LLT 83 Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599 P+ A + L G R+V E+ E + + +KQ TGGD + AR YG + E Sbjct: 84 GKNGPQHPNA---IADLAGRRMVTTHESGEGEVLREDFVKQATGGDTLKARYLYGE-FFE 139 Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA------------NRDASFAQKL 647 + ++ N ++ D WRR ++IPF RD A+KL Sbjct: 140 FKPTHKLQLLTNHKPVIKGQDSGIWRRIMLIPFKAKFDAAEGEEIGNGKYPRDMRIAEKL 199 Query: 648 ETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENL 707 W + G + GL P++ L A E+ ++ D +ID+ C++G Sbjct: 200 -AAEREGVLAWIVAGAVEWYKNGLRP--PDIVLAASEDYKEEQDRVGQFIDEECELGVEK 256 Query: 708 WEESHS-----LAKSYSEYREQELNYDRKRISTRTVTLNLKQK 745 E+ + L +Y+++ + +S L+++ Sbjct: 257 EEKLSTPMGGGLYPAYTQWCKASG---VCALSKVRFLGGLERR 296 >gi|189916738|gb|ACE62877.1| phage-related protein FY0076 [Xylella fastidiosa] gi|189916740|gb|ACE62878.1| phage-related protein FY0076 [Xylella fastidiosa] Length = 293 Score = 228 bits (581), Expect = 3e-57, Method: Composition-based stats. Identities = 67/285 (23%), Positives = 117/285 (41%), Gaps = 30/285 (10%) Query: 464 EPSQEFLDLVSGYFESE-----EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLM 518 P+ EF+ ++ E + + R G G + Q+F + G G +GKSTL+ Sbjct: 1 APAPEFITTLARITCEEGEASKPLCAFLQRWFGYCATGEVREQKFAVLYGDGNNGKSTLL 60 Query: 519 NLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKI 578 +LI G + A +N + ++ L G R+V E+ E + + + Sbjct: 61 DLITGILGRYSGVAAPGLLTGKN----GPQHPNAIADLAGRRMVTTHESGEGEVLREDFV 116 Query: 579 KQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA- 637 KQ TGGD + AR YG + E + ++ N ++ D WRR ++IPF Sbjct: 117 KQATGGDTLKARYLYGE-FFEFKPTHKLQLLTNHKPVIKGQDSGIWRRIMLIPFKAKFDA 175 Query: 638 -----------NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEE 686 RD A+KL W + G + GL P++ L A E+ Sbjct: 176 AEGEEIGNGKYPRDMRIAEKL-AAEREGVLAWIVAGAVEWYKNGLRP--PDIVLAASEDY 232 Query: 687 RQGTDTYQAWIDDCCDIGENLWEESHS-----LAKSYSEYREQEL 726 ++ D +ID+ C++G E+ + L +Y+++ + Sbjct: 233 KEEQDRVGQFIDEECELGVEKEEKLSTPMGGGLYPAYTQWCKASG 277 >gi|320094352|ref|ZP_08026140.1| hypothetical protein HMPREF9005_0752 [Actinomyces sp. oral taxon 178 str. F0338] gi|319978740|gb|EFW10295.1| hypothetical protein HMPREF9005_0752 [Actinomyces sp. oral taxon 178 str. F0338] Length = 883 Score = 228 bits (580), Expect = 4e-57, Method: Composition-based stats. Identities = 82/541 (15%), Positives = 170/541 (31%), Gaps = 71/541 (13%) Query: 273 DFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKA 332 ++ + ++ + L + + G LY+ Sbjct: 361 EYAGTDFKEPDTDSVRTVIAKTAEDTDSALADWCEPR-LAGRLEYVSGAGFRLYSPSRGT 419 Query: 333 WYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYR 392 W + + + + + + T Sbjct: 420 W---------------------ETDNSKDNARTIKLVEDMLRERHMGIVKSGDSKRTQRD 458 Query: 393 RQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYI 452 R+N+ + K ++ + L+ + D D++ L +G++DL TG + Sbjct: 459 RKNLNK-GKIEAVTRLLQGRLLHG--PDEYDANPDILNVGNGVVDLRTGTLLPHAPSYRC 515 Query: 453 TKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGN---KAQRFIHIRGV 509 T+ T P++ +++ ++ E +F R VG A G G+ Sbjct: 516 TQYTPVPYLPEASHEDWKAALAAL--PAESRPWFRRWVGQAATGYTPREDNTMLGIAAGI 573 Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569 G +GK+TL+ ++ A G A + R N + + L G R V+I E E Sbjct: 574 GANGKTTLLTAVRLALGTYAGTAAMDLLLSSPR-----NTNNTKMALYGKRFVLIEELPE 628 Query: 570 NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIV 629 ++ ++K +TG + + L + + + E A+ + + N V + WRR V Sbjct: 629 G-RLDGVQVKAVTGTELIRGNLKFKDEF-EWRATHSLIVTTNNLPTVSEFSEGLWRRPFV 686 Query: 630 IPFDKPIANR---------DASFAQKLETKY---TLEAKKWFLKGVKAYISKGLDV-DIP 676 + F + DA Q+L W ++G + G V +P Sbjct: 687 LEFPYRFTSNPQAEADRPGDAGLTQRLLAPESPALPAVLAWVVRGAVEFYEHGQQVGALP 746 Query: 677 EVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTR 736 A ++ +D A+ +C L ++ + ++ S R Sbjct: 747 APISSATASWQEQSDVLLAFASECLVKDAGAVVPGSHLYAAFEAWLSEQGAAS---WSQR 803 Query: 737 TVTLNLKQKGFIGGIKREKIEKEW--------------KSKRIIKGLKLKPAFESVDDNS 782 T + G+ +K + R +G++ F + +D Sbjct: 804 TFRGRIASHGYFRDVKEGTHRWKKLTLSTWGAEAHPTADKVRGYRGIR----FRTSEDER 859 Query: 783 N 783 Sbjct: 860 R 860 >gi|119476604|ref|ZP_01616914.1| hypothetical protein GP2143_03208 [marine gamma proteobacterium HTCC2143] gi|119449860|gb|EAW31096.1| hypothetical protein GP2143_03208 [marine gamma proteobacterium HTCC2143] Length = 594 Score = 227 bits (579), Expect = 4e-57, Method: Composition-based stats. Identities = 69/513 (13%), Positives = 159/513 (30%), Gaps = 55/513 (10%) Query: 270 DTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTAD 329 + + S+ + + + A + D ++ + + Sbjct: 101 NYLGRVALSRRNNNISSARQWLWSQVVSKAQQVAAKQTRDIHDSFDYIDESAEEKTSKPN 160 Query: 330 ----TKAWYKKDKNNVYIW-SLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPR 384 T A +K + ++ + + + A + + V + + Sbjct: 161 QYVLTNAVIQKLGEDNLVFANGSFWRWDAEYGVWASVSDQSVKQIIQ------------- 207 Query: 385 FWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDL--ETGQ 442 +++ +N + + + F+ +D + +G + Sbjct: 208 TVIPKLQITKSIVDNVLSVTKTMVHKEKHRFNQLNDG-------INTLNGTIRFIDNRWI 260 Query: 443 KVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMD----YFTRCVGMALLGGN 498 K Y T + + + F + +D + +G LL Sbjct: 261 LTPHEKTEYRTSVIPVEYDPTAEAPRCMQFEREVFRDDPDIDDKIFLLRQAMGYTLLSST 320 Query: 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMG 558 F G G +GKS ++LI+ G + V + + + ++ G Sbjct: 321 PYPSFFIFEGSGANGKSVCLDLIRALCGTENVSAVQMNQMAN---------RFQRAQMNG 371 Query: 559 SRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRN 618 ++SE E + A+IK + G+ T + + E +T F N R+ Sbjct: 372 KLANLVSELPEGGRLPDAEIKSDSSGELTTVENKGRDPF-EIIPFYTMFFATNHLPHTRD 430 Query: 619 PDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIP 676 A RR +I F++ + +D +KL L+ +K + G P Sbjct: 431 LSPALQRRARIIRFNRTFSSGEQDPHLIEKL-KGELPGILNQALEALKHLFTDG-AFVEP 488 Query: 677 EVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTR 736 + AK++ +D ++++ C + + +L ++Y + + ++ + Sbjct: 489 QSSKDAKKDWLLQSDQVTQFVNESCVLNVDGRVSVDTLYRTYRMWATDSGF--KSLVTKK 546 Query: 737 TVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGL 769 T T L G + S R G+ Sbjct: 547 TFTQRLVISGVGST--------KSGSVRYYSGV 571 >gi|313158768|gb|EFR58155.1| phage/plasmid primase, P4 family, C-terminal domain protein [Alistipes sp. HGB5] Length = 493 Score = 227 bits (579), Expect = 5e-57, Method: Composition-based stats. Identities = 73/462 (15%), Positives = 154/462 (33%), Gaps = 51/462 (11%) Query: 297 LIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAW-YKKDKNNVYIWSLTLDKITA-- 353 + + + N+ + I+ A+ W +++N +Y+++ Sbjct: 49 DMAQSIQKKLLKMKVNEKHYVIFTIEEIARLAEKNDWGLCRNQNEIYLYNGMFWSRLDVD 108 Query: 354 SIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGS 413 + FL+ E + + K + +S QS A Sbjct: 109 AFQKFLLKASERMGVPIVSSKYYQFGKKLFEQF--------------MMQSYLQSPAA-- 152 Query: 414 IFSITSDLLDSSSRFLGEQDGILDLETGQ--KVKPTKELYITKSTGTPFVEGEPSQEFLD 471 +S+ + +G ++ GQ K K+ ++T + + F Sbjct: 153 ---------NSNVVLINLLNGTYEIRNGQGKLRKFCKDDFLTHQLPFKYNPDAAAPLFDK 203 Query: 472 LVSGYFESEEVMDYFTRCVGMAL--LGGN--KAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 +S E +G G K ++ + + G G +GKS ++ G Sbjct: 204 YLSKVQPDESARKVLAEYIGYLFIKTGNTILKEEKALMLYGGGANGKSVFFEIVNALLGA 263 Query: 528 QYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCM 587 + VI D+ +L + SE N ++ ++ KQ+ G+ + Sbjct: 264 ENVICHSLQDLTDGSG-------YYRAQLANKLVNYASEI--NGKLESSIFKQLVSGEPV 314 Query: 588 TARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD--ASFAQ 645 +ARL YG + N+ DA++RR++++PFD I + Sbjct: 315 SARLPYGKPFH-LTHYARLIFNCNELPRGNEFTDAYFRRFLIVPFDVTIPPEEQIKDLHS 373 Query: 646 KLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWI-DDCCDIG 704 ++ W L+G+ + + +A E+ R +D+ + ++ D+ Sbjct: 374 QIIENELAGVFNWVLRGLARLLKQN-GFTECIAARRAVEDYRLQSDSLRQFLNDERYKSD 432 Query: 705 ENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746 N+ + L Y Y ++ Y ++ LK G Sbjct: 433 VNVKTKIVDLYIEYKYYCQENGFYH---LTKPNFIKRLKSYG 471 >gi|169830164|ref|YP_001700322.1| primase [Lysinibacillus sphaericus C3-41] gi|168994652|gb|ACA42192.1| primase, putative [Lysinibacillus sphaericus C3-41] Length = 373 Score = 227 bits (577), Expect = 8e-57, Method: Composition-based stats. Identities = 56/354 (15%), Positives = 126/354 (35%), Gaps = 15/354 (4%) Query: 406 AQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP 465 +++ A + L+ S + Q+G+ +L+T + K T + Sbjct: 15 KEAIRAILREATFVAELNIYSDLVNLQNGMYNLKTHKLEKHHPRYLSTVRIPIIYNRSAK 74 Query: 466 SQEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524 +FL + +++ +G + K+++ ++ G G +GKS L NL+K Sbjct: 75 CPKFLHFMDEITNNDSDLIKVHQELIGYWITTEIKSEKAVYYYGRGANGKSVLANLVKIL 134 Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN-ENDEINAAKIKQMTG 583 GN+ V + +N L +M + + +E ++N K + Sbjct: 135 VGNENVSTIPLAQF---------NSNFGLEGIMNKTLNVAAENEMNGLKLNTETFKAIVS 185 Query: 584 GDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASF 643 GD +T + + + + + N+ + ++RR I+IPF + + + Sbjct: 186 GDGITINIKFKSPIVNYKSKCRLLFLGNELPDTSDLTQGYFRRLIIIPFKRTFKEEERNR 245 Query: 644 AQ-KLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCD 702 + + W ++G+ + + + + + + + Sbjct: 246 DILQELQEELDGIFNWAIEGLVRLNQLEFNFTKADAIESEMAKYQLMQNPVLNFFESTVV 305 Query: 703 IGENLWEESHSLAKSYSEYREQELNYDR---KRISTRTVTLNLKQKGFIGGIKR 753 + NL + + K Y E+ E+ Y+ R + L KG + KR Sbjct: 306 LSGNLKIKRSEIYKLYLEWIEKNGLYNSVRNNRQFKKEFENVLDSKGILIIEKR 359 >gi|229106917|ref|ZP_04237019.1| Primase [Bacillus cereus Rock3-28] gi|228676527|gb|EEL31271.1| Primase [Bacillus cereus Rock3-28] Length = 519 Score = 227 bits (577), Expect = 8e-57, Method: Composition-based stats. Identities = 75/555 (13%), Positives = 172/555 (30%), Gaps = 65/555 (11%) Query: 208 REITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNY 267 +++ L+ E I + H+ + S++ E++ N Sbjct: 5 KQLKEMLASLNEGSTASDFFNAIR-GIKGHNTQDIVNCLLA--------NSSFYEKDINK 55 Query: 268 KWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSD--AYNKAMFSIYKKGHFL 325 E + KK H + I G + +N +F+ Y + Sbjct: 56 -----GEYEESERIKKIRAEILDVIHTSEAIQTGFCYDEKKEKFYFNANLFADYFLQGVI 110 Query: 326 YTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRF 385 D + + + V + + + L E N+ S + Sbjct: 111 TCCDQHGILYVYNHK-----GYYQECNS------VQLGKIIRTLMNEGLANSWRSGYEKE 159 Query: 386 WFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVK 445 R + + L+ + ++ ++G+ +L + Sbjct: 160 AIQAIQRE----------------------ADYVEELNPYNDWINLENGMYNLTSYTLEP 197 Query: 446 PTKELYITKSTGTPFVEGEPSQEFLDLVSGYFES-EEVMDYFTRCVGMALLGGNKAQRFI 504 + T F E +FL + EE++ +G L + ++ + Sbjct: 198 HHSKYLSTVRVPIHFNETATCPKFLRFMKDITNDNEELIKVHQELLGYWLTTETQCEKAV 257 Query: 505 HIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVII 564 + G G +GKS L NL+ G+ V + S + N L ++G + I Sbjct: 258 YYYGRGANGKSVLANLVSILVGSGNVSSVPLSQFSK---------NFGLEGIIGKTLNIA 308 Query: 565 SETN-ENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAW 623 +E + +N K + GD +T + Y + + + N+ + + Sbjct: 309 AENEMQGSRLNTEAFKSIVSGDGITINIKYRSPIVNYKSKCRLLFLGNELPDTTDLTQGY 368 Query: 624 WRRYIVIPFDKPIANRDASF-AQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKA 682 +R+ ++IPF + + + + + W ++G+ + +V Sbjct: 369 FRKLVIIPFKRTFTEAERNRNLLEELKEELPGIFNWAIEGLNRLKKQKYIFSHSKVIEAE 428 Query: 683 KEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNL 742 + R + + + +I SL +++ ++ ++ S + + Sbjct: 429 MSKYRLAQNPVLHFFESSIEIEVGSKIRRPSLYEAFQKWSHEQGMDSSALRSRQRFFKDF 488 Query: 743 KQ----KGFIGGIKR 753 + KG I KR Sbjct: 489 ENVLDSKGIILNQKR 503 >gi|7288084|emb|CAB81819.1| hypothetical protein [Sulfolobus islandicus] Length = 699 Score = 226 bits (576), Expect = 1e-56, Method: Composition-based stats. Identities = 90/725 (12%), Positives = 212/725 (29%), Gaps = 114/725 (15%) Query: 8 EQAKQAIHNGFKLIPLRLGDKRP--QRLGKWEEQLLSSEKIDKL------PACGFGFVCG 59 + A+ ++NGF + P+ K+P K+ + L+ E+ + + G Sbjct: 6 QYAQWFVNNGFAIFPIDKETKKPVISEWQKYSREKLTEEEKAEFLKMIGEQNYNYAIPGG 65 Query: 60 VGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPF---------RMNK 110 + L D + + + L + + L F + N Sbjct: 66 Q--KGLVVLDFEDLQLLKQWISEPALDDLCKQTLC-VQTPHGGLHIFVISYEIPEHKFNP 122 Query: 111 EGIKKKKTTESTQGHLD-ILGCGQYFVAYNIH----PKTKKEYTWTTPPHRFKVEDTPLL 165 K Q + +LG G P+ +++T + ++ Sbjct: 123 AFTLNGKGIVDLQSYNSYVLGVGSCINHKYCESPKCPRRGQDHTTCYTLYNNELVPIVE- 181 Query: 166 SEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGS 225 + ++ K+ EI + +K W E + Sbjct: 182 TVRGLKEFLKWLDEIAKQKKLGIELSPSAKEWVYGKTEAVEEEEFKKLKEDMAKYNKFKG 241 Query: 226 HDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRS 285 + + + KE +++W +T + K ++ I + Sbjct: 242 KTVEAVREEVCKEMKKSNEELKEKSQKWKAIYNTAIPVICDSK--SYTQLGIDRSRGDWR 299 Query: 286 TFTSLFYHHGKLI---------PKGLLASRFSDAYNKAMFSIYK---------------- 320 F +LF H + + + +++ + +K Sbjct: 300 VFRALFTHGVADLDVVDKLLPADSKVYSPKWNRYMIHTIAKAWKYSKPALKFQKEAQGKN 359 Query: 321 ------------KGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIM-NFLVSMKEDVF 367 L KA+Y+ +N I + I F +++ + Sbjct: 360 EKEAKKIARKIITEAVLERYKIKAFYQVTGHNQAIVGTFVWDKKKGIYVPFDKGLRKVIR 419 Query: 368 DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSR 427 L+E + +++ R +R + + K + + Sbjct: 420 KLAESLQIKSRDKTLAR-----LSKRDVDDIVDEIKDLKLTPIPAEPLRV---------- 464 Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP--------------------SQ 467 ++ ++ + K P+ Sbjct: 465 --AFKNVTIEWAIKANILHRKTPKQYSFYYLPWTVNYEEFNKMKSLSIQEIEELAKRLCP 522 Query: 468 EFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 + L+ + + + + +G L G K ++ + G G +GKS+ +NL+K G+ Sbjct: 523 KSLETFKSWVGVKWI--LLFQIIGYTLYPGIKFRKAFMLVGEGKNGKSSFINLVKKVLGD 580 Query: 528 QYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCM 587 V + + + L ++E+ + + ++K++TG D + Sbjct: 581 YAVSISPRELFD-------PRNRFIVGNLYHKLANAVAESKDYSIDDMDRVKRLTGDDWI 633 Query: 588 TARLNYGNTYSESPASFTPFIVPNKHLFVRN-PDDAWWRRYIVIPFDKPIANRDASFAQK 646 TA + + + + I N VR+ D A+W R++++ F + D+ F + Sbjct: 634 TADVKFKDP-ITFKSVAKLIIASNNMPHVRDTNDRAFWHRWVIVEFPHQFKDNDSWFDKT 692 Query: 647 LETKY 651 + Sbjct: 693 FTEEE 697 >gi|296393232|ref|YP_003658116.1| phage/plasmid primase [Segniliparus rotundus DSM 44985] gi|296180379|gb|ADG97285.1| phage/plasmid primase, P4 family [Segniliparus rotundus DSM 44985] Length = 633 Score = 226 bits (575), Expect = 1e-56, Method: Composition-based stats. Identities = 58/442 (13%), Positives = 137/442 (30%), Gaps = 22/442 (4%) Query: 338 KNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVE 397 + + +W ++ + + + + + R + T + +V Sbjct: 60 RGDWLLWDGSMWAVV-EQDELRSHIYRSLEHAVYKARVGKGEAWEARAFDPTPGKVSSVL 118 Query: 398 ENSKAKSTAQS-LEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKST 456 + +A L+A + + + +G+L + + ++ T E + + Sbjct: 119 DALRAVVLMDGGLDAPKWIGASGARRPPAGEVVACANGLLHVPSRTMIEHTPEFFTRTAV 178 Query: 457 GTPFVEGEPSQ-EFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGK 514 + P +L + + + + G L G Q+ + + G SGK Sbjct: 179 PFDYNPSAPEPKRWLGFLQSVWPGDADSVALLQEFFGYVLSGRTDMQKILLVVGPPRSGK 238 Query: 515 STLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISET---NEND 571 T+ ++ G + + N L L+G + ++ + Sbjct: 239 GTIARVLIALVGKANAAAPTLASL---------GTNFGLSPLLGKPLAVVGDARLGGAGT 289 Query: 572 EINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIP 631 ++ ++G D +T ++ IV N+ + + A +R++V+ Sbjct: 290 RQVVERLLSISGEDWLTVDRKNKEPWTGPIP-ARFVIVSNELPRLSDASGAIAKRFVVLT 348 Query: 632 FDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTD 691 + ++ + W L G++ G A E Sbjct: 349 MAQSFLGKEDHRLTADLLEELPGILAWSLDGLERLARNG-SFTRTASSQDATRELEDLAS 407 Query: 692 TYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGI 751 A++ + C I + E L ++ + EQ K ++ +L+ F G Sbjct: 408 PVAAFLREHCVIDPDGTVEKDKLYARWAVWCEQNG---LKPTNSAMFGRDLRAA-FPGLG 463 Query: 752 KREKIEKEWKSKRIIKGLKLKP 773 K R G++LK Sbjct: 464 DARPRNTGSKRPRHHVGIRLKT 485 >gi|290959763|ref|YP_003490945.1| NTP-binding protein [Streptomyces scabiei 87.22] gi|260649289|emb|CBG72404.1| putative NTP-binding protein [Streptomyces scabiei 87.22] Length = 485 Score = 225 bits (574), Expect = 2e-56, Method: Composition-based stats. Identities = 58/490 (11%), Positives = 148/490 (30%), Gaps = 28/490 (5%) Query: 300 KGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFL 359 + L A A + + ++ D K ++ + + W+ T + Sbjct: 10 EELPAPSHPMAVARRLLPDWQGE------DGKLVCRRWRASWMRWNGTCWREVDDD-QVR 62 Query: 360 VSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITS 419 +M E + + + ++ + ++ + + Sbjct: 63 KAMYERLEHAVYQVPAKDGETEERDWAPTKPKISNLLDALGSIVLLPTDTDTPAWIDDHG 122 Query: 420 DLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE- 478 D + Q+G+L + + T E + S + + + + ++ + Sbjct: 123 DTGQEHGPIVACQNGLLRIRDRALMPHTPEFFNNVSIPYAYDPSATAPTWDNFLAQLWPD 182 Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538 + + G + G Q+ + + G SGK T+ ++K G + + Sbjct: 183 DPDSIAALQEWFGYVISGRTDQQKILLMVGPTRSGKGTIARVLKALVGKENLAGPTL--- 239 Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAA---KIKQMTGGDCMTARLNYGN 595 N L L+G + +IS+ + N ++ ++G D + Y Sbjct: 240 ------AGLGTNFGLSTLIGKPLGVISDARLSGNDNTQVVERLLTISGEDTIDIDRKYRQ 293 Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655 ++ + I+ N+ + R+I++ ++ Sbjct: 294 PWTGKLPT-RLVILSNELPHFGDSSGVIANRFILLNTRLSWLGKEDPTLTDRLIAEVPGI 352 Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLA 715 W L+G+ G + P +A R A++ + C G +L Sbjct: 353 INWALEGLARLQRTG-RITEPASSREAVTTMRDTASPTSAFVRERCTTGPTCSVPVEALW 411 Query: 716 KSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIE-KEWKSKRIIKGLKLKPA 774 + ++ E K + + NL + + R + + G+ + + Sbjct: 412 AVWRDWAEDNG---VKPGTKQVFGRNL--LSVVPQLNRTRPRDAYGRQVVTYNGITVNVS 466 Query: 775 FESVDDNSNI 784 + ++ I Sbjct: 467 EPHLPESRLI 476 >gi|55416829|gb|AAV50479.1| helicase III/ VV D5-type ATPase (C-term) [Acanthamoeba polyphaga mimivirus] Length = 391 Score = 224 bits (571), Expect = 3e-56, Method: Composition-based stats. Identities = 81/337 (24%), Positives = 131/337 (38%), Gaps = 31/337 (9%) Query: 414 IFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE----F 469 LD ++ +G ++G+ DLE G + I+ T ++E + E Sbjct: 6 YDPNFLTNLDENNYLIGFENGVFDLEAGIFRDGCPDDCISLCTNYKYIEIDEDDETFKNI 65 Query: 470 LDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529 + + + +Y + L G N + F + G G +GKS LM L+KY G+ Y Sbjct: 66 NGFLKKIQPDKSMREYILTLLSTCLSGTNSEESFYVLTGSGANGKSKLMELLKYTLGDLY 125 Query: 530 VINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTA 589 + + + R + A+P L G R E +DEIN +K TGGD +TA Sbjct: 126 K-PMDIRLLTEKRSSSS-SASPELADKKGIRACPFDEPKASDEINTGFMKIFTGGDTITA 183 Query: 590 RLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR---------- 639 R Y F PF++ N+ +++ DD WRR VIPF Sbjct: 184 RALYKEP-IYFKPQFKPFLLCNELPTIKSDDDGTWRRLKVIPFLSKFIKHSEATKKMKKE 242 Query: 640 ---------DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGT 690 D S ++KL + LK + Y GL P++ + E R+ Sbjct: 243 GLPKNHFWADTSLSEKLP-DWKQGFMCLLLKYFRKYRKHGL--IHPKLVTQHTVEYRKKC 299 Query: 691 DTYQAWIDDCCDIGENLW--EESHSLAKSYSEYREQE 725 D +Q +I D +N L ++ E+ + Sbjct: 300 DVFQDFIGDYLVRVDNTKKGISVMDLYQNMREWYKSN 336 >gi|167044432|gb|ABZ09108.1| putative Poxvirus D5 protein-like protein [uncultured marine crenarchaeote HF4000_APKG6D9] Length = 435 Score = 224 bits (571), Expect = 4e-56, Method: Composition-based stats. Identities = 59/363 (16%), Positives = 129/363 (35%), Gaps = 23/363 (6%) Query: 419 SDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE 478 D+ + ++GIL+L+T Q + + + ++F+ + Sbjct: 89 DQEFDNHENLVNLRNGILNLQTQQLSPHSHNFLFRIQLPITYDQNATCEQFIRFLEQCHP 148 Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538 E+ LL ++ G G +GKST + +I+ G V N D+ Sbjct: 149 DEKNRITALEAFASTLLPNIHLEKMFMNVGSGANGKSTYLKVIEQFLGTDNVSNISIHDM 208 Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598 +R +AG L+G I ++ + + A +K + D ++ + G Sbjct: 209 ESDRFAKAG--------LVGKFANIYADISRRELPELASVKAVISSDSISVQRK-GEHRF 259 Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD------ASFAQKLETK-Y 651 + N+ + A +RR ++I +++ +++D + ++L T+ Sbjct: 260 TMRNTAKLIFSCNELPELGEDSHAVYRRLVLIEWNERFSHQDKHHKINPNLFKELTTEQE 319 Query: 652 TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEES 711 L+ + G + E LK + Q D ++D C + Sbjct: 320 LSGILNLLLQHTQKISKNG-KLTYDETALKLRGIWAQKADPIGTFLDSCVEQDFETKTSK 378 Query: 712 HSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771 S+ +++ + + + + QK I+ E K+ R+ +G+K+ Sbjct: 379 ASIFQAFCSWCKSN---KITPKKQKQFNYKVSQK---FAIQDTIGRIENKTTRLWEGIKV 432 Query: 772 KPA 774 A Sbjct: 433 VSA 435 >gi|51245423|ref|YP_065307.1| hypothetical protein DP1571 [Desulfotalea psychrophila LSv54] gi|50876460|emb|CAG36300.1| conserved hypothetical protein [Desulfotalea psychrophila LSv54] Length = 593 Score = 224 bits (570), Expect = 5e-56, Method: Composition-based stats. Identities = 85/508 (16%), Positives = 174/508 (34%), Gaps = 70/508 (13%) Query: 308 SDAYNKAMFSIYKKGHFLYTA---DTKAWYKKDKNNVY--IWSLTLD------------- 349 ++ + + + K +LY D WYK + + T+D Sbjct: 49 NERGDGLLLAAILKDRYLYVTAPDDKGEWYKWVGHVWQLDEFDTTVDVAEQVALAYEEYA 108 Query: 350 -----KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFN-------------TDY 391 + + E + + E E+ + K Sbjct: 109 FHVEAQRDQELAKLDEERNEKIAMIKAECEEEDAKKKIDTLLQKPLVPPKWMTSTIKDYN 168 Query: 392 RRQNVEENSKAKSTAQSLEAGSIFSIT--SDLLDSSSRFLGEQDGILDLETGQKVKPTKE 449 +R V + + A+ I SD LD L +G+LDL+ G + Sbjct: 169 KRAWVLRSRERIMKARFFAPKVDRRIAAISDDLDQKKWLLPCANGVLDLKRGLLMDGRPS 228 Query: 450 LYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVM------DYFTRCVGMALLGGNKAQRF 503 +TK + F +++ E+ + R G A+ G + Sbjct: 229 DLLTKQIDVAYNPDADYSFFEEIIKDICVCPEIEGTDLLPAFLKRLFGYAITGNVNEEFL 288 Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVI 563 G G +GK T++ I G Y + I Q P + + L G R+V+ Sbjct: 289 AIFIGPGRNGKGTILETITSVLGAYYHQANRSLFIEQKFEPPPSATSEHMYALQGKRLVV 348 Query: 564 ISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAW 623 +ETN+ +I+ IK +TGG+ + R N+ + + T + N + + + Sbjct: 349 GAETNKGQKIDGGLIKGITGGNKVNYRKNFKSE-KTFTPTHTLILETNNIPYGLTKEFSL 407 Query: 624 WRRYIVIPFDKPIANRDASFAQK-------------------LETKYTLEAKKWFLKGVK 664 +R +++ F + + +K + KW ++G Sbjct: 408 TQRLVLVDFPFRYVDDIEAEERKYPALKGRFKKKNKDLKAKLKSRESREGVLKWLVEGCL 467 Query: 665 AYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCD---IGENLWEESHSLAKSYSEY 721 + GL IP+ L+A+E+ + D ++ + + EN+ E L +++ + Sbjct: 468 EWDEHGLL--IPDCVLQAREDLTKKEDYIGQFLGEIVEHVPDRENMRMEFKYLYEAFQYF 525 Query: 722 REQELNYDRKRIS-TRTVTLNLKQKGFI 748 + ++ ++ T++ LK++G+ Sbjct: 526 WKDTIDSRDNKVPHKNTLSKELKERGYS 553 >gi|319891793|ref|YP_004148668.1| Putative primase, superantigen-encoding pathogenicity islands SaPI [Staphylococcus pseudintermedius HKU10-03] gi|317161489|gb|ADV05032.1| Putative primase, superantigen-encoding pathogenicity islands SaPI [Staphylococcus pseudintermedius HKU10-03] Length = 789 Score = 224 bits (570), Expect = 5e-56, Method: Composition-based stats. Identities = 96/773 (12%), Positives = 224/773 (28%), Gaps = 81/773 (10%) Query: 15 HNGFKLIPLRLGDKR--PQRLGKWEEQLLSSEKID-KLPACGFGFVCGVGEQPLYAFDID 71 + +P R W + + + + G GFV G+ DID Sbjct: 38 QQNYSKVPYNDKGYRASSNNKNTWTDFNTAYIEYEMNEKYSGIGFVL-SGDNEYICLDID 96 Query: 72 SKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGC 131 + D + L+ + F K +KK +++ Sbjct: 97 NAVSDNGEIHSDLVKTLNKMTYCEKSPSGTGVHCFFKGKLPSNRKKKRTDL--DIELYDT 154 Query: 132 GQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSI 191 ++ + ++ + + VE FK + + Sbjct: 155 ARFMTVTG------------ESIGQSEISEDQTILNNLVEQYFK------EEASFEATTT 196 Query: 192 IPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIP-----VVMAVHH----ETRG 242 + + ++ + N + + + G ++++ V +H+ + Sbjct: 197 NNHNSESQLSDEEVINIMLKSKQKDKISDLLQGDYEQYFASPSEAVQSLLHYLAFYTGKN 256 Query: 243 SSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGL 302 ++ + I ++ ++ + N W + E+ K + Sbjct: 257 KAQMERIFLTYNNLTDKWNSKRGNSTWGELELEKAIANQK----------EVYQKGINDF 306 Query: 303 LASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSM 362 + M S Y K W ++ + T+ ++ Sbjct: 307 EVILSDKESVRKMLSKVGDDERSYM--EKLWIEEGEKGRKP---TVISPNRCAHLLKENL 361 Query: 363 KEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIF--SITSD 420 K +FDL E + ++ + N Y ++ + ++ ++ E + Sbjct: 362 KFILFDLEENTKLAMYRAEEGIYTQNVSYIKRVISWLEPKLNSNKADEVIYHLKNRVDIK 421 Query: 421 LLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFV-----EGEPSQEFLDLVSG 475 +S + ++G+ + +T Q T E T T + + ++ Sbjct: 422 SKTNSPDLIPVKNGVFNRKTKQLEPFTPEYVFTTKINTAYKTQSGVPVIEGWSVDNWINE 481 Query: 476 Y-FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534 V + + +L G ++ I + G G +GK T LI G + + + + Sbjct: 482 IACNDHGVAKLLWQVINDSLNGNYTRKKAIFLVGDGNNGKGTFQELISQLIGAENIASLK 541 Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA-AKIKQMTGGDCMTARLNY 593 ++ + L L G VI + I+ + K + GD + Sbjct: 542 VNEFDE---------RFKLSVLEGKTAVIGDDVPVGVYIDDSSNFKSVVTGDPVLVEFKN 592 Query: 594 GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTL 653 + T N ++ RR +++PF+ + +F K + Sbjct: 593 -QPLYRATFKCTVIQSTNGMPSFKDKTSGTLRRLLIVPFNANFNGQSENFNIKEQYVKNQ 651 Query: 654 EAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAW----IDDCCDIGENLWE 709 + ++ L ++ DIPE + +Q D + D+ Sbjct: 652 KVLEYVL--YRSINMDFDTFDIPEASNNMLDIYKQDNDPVYDFKVNVFDEWVVKT----I 705 Query: 710 ESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKS 762 + Y E+ E +S R + + G++G + + Sbjct: 706 PKKVVYYKYKEFCEHSGYTG--VLSDRKFYKSFE--GYLGEKWDTDDRGRFSN 754 >gi|327198749|emb|CCA61450.1| unnamed protein product [Diadromus pulchellus ascovirus 4a] Length = 849 Score = 223 bits (568), Expect = 8e-56, Method: Composition-based stats. Identities = 104/687 (15%), Positives = 213/687 (31%), Gaps = 64/687 (9%) Query: 96 IGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPH 155 + P L + + K S + + V + + + Sbjct: 162 SSKSPSDLPYLVSHALVYESKTGRVSRENDWE-------SVFAGVKLDKETVPRSSVKNM 214 Query: 156 RFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLS 215 + + D++ + F P+ + ++ +I + Sbjct: 215 IRTLLSIRVGKIVDMQKQYSFENMPEAKANNAHLMNEPA-----AVHVNISDEKIGNLVM 269 Query: 216 CFGEEFYNGSHDEWIPVVMAVHHETR---GSSKGKEIARRWSKQGSTYDEENFNYKWDTF 272 C E + W+ V M + R ++ + + +S+Q Y++ K+D+ Sbjct: 270 CLKSERA-EDYGNWLKVGMILASLARSRKDAAYFRNLFHIFSRQSPKYNDVECEAKFDSL 328 Query: 273 DFEEIGDTAKKRSTFTSLFYHHGKLI-PKGLLASRFSDAYNKAMFSIYKKGHFLYTADTK 331 I + +L + + K L F+ Y + + T Sbjct: 329 ----IKSSHDGGLGIGTLVFMAKEDNAIKDLSDILFNYCLEFIPLHDYDIAKMVIESVTA 384 Query: 332 AWYKKDKNNVYIWSLTLDKITAS--------IMNFLVSMKEDVFDLSEEPEDNNKNSKSP 383 + Y + T+ K + + S V +D Sbjct: 385 RYITHKDFGCYAFEGTIWKEVTGWDNIFKNHVNEWAFSYIRTVKQKITSSDDPEDPHTKS 444 Query: 384 RFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQK 443 R T + V+ S + +S+ L + ++RF+ + + D+E + Sbjct: 445 RMAILT-RLEKKVKNYSSMNNIVKSMFDQYFDHKMYLLFEQNTRFIAFNNCVFDIEEWKL 503 Query: 444 VKPTKELYITKSTGTPFVEGEPSQE-----FLDLVSGYFESEEVMDYFTRCVGMALLGGN 498 V + Y++ VE E S + D F +E+ +Y + G N Sbjct: 504 VPANPDHYLSIKIHHDLVEWESSPQAAKQFVEDFFYKIFPDDELREYCLDNFARIITGKN 563 Query: 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMG 558 ++F G G +GKS +NL++ FG + ++ + + G A P RL Sbjct: 564 VYKQFQFWTGTGNNGKSVCINLMEAVFGKMSMKTPKSIVMGG--QVKQGGAAPETYRLKD 621 Query: 559 SRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG--NTYSESPASFTPFIVPNKHLFV 616 +R+ II E ND ++ +IK ++G D +R + E F P ++ N+ + Sbjct: 622 ARLGIIDEVTNNDYLDPGQIKGLSGNDTFYSRDLFQKCKDIKEITPMFFPILITNETPII 681 Query: 617 RNPDDAWWRRYIVIPFDKPIA-------------------NRDASFAQKLETKYT--LEA 655 + PDDA W R +I F+ D KL+ L Sbjct: 682 KRPDDATWDRIRLIRFESKFKSDVVSFIKNNPGVDHSKVFKADPQVGDKLKKNAKYFLAF 741 Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLA 715 L +P+ + + G + + ++++ + S + Sbjct: 742 FMSRLLKADTIDEFNSGEVVPDKVNEGLHNFKSGQNIMRRFLEENFIVDP----VSQEVY 797 Query: 716 KSYSEYREQELNYDRKRISTRTVTLNL 742 +E + +S L Sbjct: 798 SLNKIMKEYNATRPKVVLSLEETLSAL 824 >gi|87198666|ref|YP_495923.1| Phage or plasmid primase P4-like [Novosphingobium aromaticivorans DSM 12444] gi|87134347|gb|ABD25089.1| Phage or plasmid primase P4-like protein [Novosphingobium aromaticivorans DSM 12444] Length = 540 Score = 222 bits (564), Expect = 3e-55, Method: Composition-based stats. Identities = 76/507 (14%), Positives = 152/507 (29%), Gaps = 51/507 (10%) Query: 304 ASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMK 363 +D N G L+ AD K + M L + Sbjct: 11 RLPTNDLGNARRLFEAANGRLLWLADGAG----GKGCWIAFDGIRWSADEGPMRALAFAQ 66 Query: 364 EDVFDLSEEPEDNNK-------------------NSKSPRFWFNTDYRRQNVEENSK--- 401 + ++ +E + ++ + W + + + + Sbjct: 67 KAAVEICDEAHALRECTADELAEVYGRKFSKEMAEERAGQLWTWSIKSGDSAKTTAMQNQ 126 Query: 402 AKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQ--------KVKPTKELYIT 453 K E + + D+ +G L + + Sbjct: 127 FKGLRDGDEGPFVTQVWQRDFDAQPMAYHCSNGTLRFVQDDAGTWSHVFEKGHRPDDRFM 186 Query: 454 KSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSG 513 + + ++ +++ + R GM L Q F +G G G Sbjct: 187 QVANVAYDAAAKAKAWIERMEVMHHDPVQRTALQRIYGMTLTALISDQAFYIFQGKGQDG 246 Query: 514 KSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMG-SRIVIISETNENDE 572 KS +++ G + + +G ++RL G R+V++ E +N Sbjct: 247 KSVTNDVVCQLHGMYARKADPKTFLEGPTQQSSG-PQSDIVRLAGDVRLVVMDEPKKNST 305 Query: 573 INAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF 632 + KIKQ TG + + AR + T + N + D + RR+ + P+ Sbjct: 306 WDGQKIKQATGSEMI-ARGVHATTELSFTPHWQLIAECNGLPKAPSDDRGFRRRFKLYPW 364 Query: 633 DKPI------ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEE 686 A+ + W +KG ++++ + PE +A Sbjct: 365 VVQFGVTPGVADEPVHLVKARLIGEGSGVLNWMIKGCVEWLNERVVP-EPEAAKRATASF 423 Query: 687 RQGTDTYQAWIDDCCDI-GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK 745 + WI CD+ EE+ L K++ ++ + + K I+ T L Sbjct: 424 WSASSAMGEWIASHCDLSDPEAREEATPLYKAFRQFCIDRGDDETKIITQTTFGRQLNDA 483 Query: 746 GFIGGIKREKIEKEWKSKRIIKGLKLK 772 I R K +R+ G++LK Sbjct: 484 ----QIYRVPNNSTGKVERV--GIRLK 504 >gi|297172230|gb|ADI23209.1| predicted ATPase [uncultured Gemmatimonadales bacterium HF0770_11C06] Length = 352 Score = 221 bits (563), Expect = 4e-55, Method: Composition-based stats. Identities = 63/357 (17%), Positives = 129/357 (36%), Gaps = 26/357 (7%) Query: 423 DSSSRFLGEQDGILDLETGQKV------KPTKELYITKSTGTPFVEGEPSQEFLDLVSGY 476 + +L ++G+LD+ T E + F ++ + Sbjct: 11 PADREYLAVKNGLLDVRAWLTGDSPVLGPHTPEWFTPVCLPYEFDPTATCPKWEGFIQWM 70 Query: 477 FE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535 F+ + ++ G L+ + Q F+ + G G +GKS L+ +K+ G++ + Sbjct: 71 FQHDDALIRLVQEWFGYCLVLDHSQQVFVIVVGDGANGKSVLLQTLKHLVGHKNCSSVAL 130 Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595 + L +G + I+SE + ++ K+K GD MT + Sbjct: 131 ENFDG---------RFDLAMTIGKLVNIVSEIGDVAKLPEGKLKAFVSGDLMTFDRKHRE 181 Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTL 653 + + NK + D WRR+I +P D +A ++D + QKL+T Sbjct: 182 P-LQVNPTARLVFATNKLPTFADRSDGLWRRFIPLPCDATVAPRDQDRALPQKLQT-ELP 239 Query: 654 EAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHS 713 W G++ +G ++PE + E R + + D C + Sbjct: 240 GILNWAAAGLRRLRKRGY-FEVPEASRRLLAEHRGASQPELIFFADHCKAQADAEMACAI 298 Query: 714 LAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLK 770 L +Y + E + + + L L+++ ++R + + K G+ Sbjct: 299 LYGTYQRWCED---GAHRAMDPQQFGLALRKR--FVRVERARRRRGGKQLWFYVGVA 350 >gi|329955101|ref|ZP_08296082.1| phage/plasmid primase, P4 family domain protein [Bacteroides clarus YIT 12056] gi|328526391|gb|EGF53406.1| phage/plasmid primase, P4 family domain protein [Bacteroides clarus YIT 12056] Length = 486 Score = 220 bits (560), Expect = 7e-55, Method: Composition-based stats. Identities = 66/492 (13%), Positives = 155/492 (31%), Gaps = 32/492 (6%) Query: 292 YHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKI 351 K I + + F + Y ++ +K D K +++ ++ + + Sbjct: 5 KEILKEILDNIPKTDFKEIYAGGLYRRLEKET---DPDVKKLFQEKIYSIQVTDENKSVL 61 Query: 352 TAS---------IMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKA 402 +++ + + ++ + F + + ++ Sbjct: 62 VVEKVKEVAGQLGYGLVINEGKTCYLYNKVFWEPINELDLKHFLGKAFQKMGADKYTARN 121 Query: 403 KSTAQSLEAGSIFSI-TSDLLDSSSRFLGEQDGILDLETG---QKVKPTKELYITKSTGT 458 A + + +S+ D + + L + ++ + + + Y Sbjct: 122 VRIANKVHEQACYSLYRQTERDKGVVKINLTNTTLVIGHDGSVKEQEHSADDYFFYVLPY 181 Query: 459 PFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLM 518 + F + +++V + VG L K ++ + G G +GKS Sbjct: 182 EYDPKAMCPMFHKFLDEVLPAKDVQEVLQEFVGCCLNPFIKLEKALCCVGSGFNGKSVFF 241 Query: 519 NLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKI 578 ++ G V + + + ++ + + S+ N Sbjct: 242 EIVMALLGEDNVCSYNINSLCDDKGYS-------RAMIKNKLLNYSSDFN-GKIFANGIF 293 Query: 579 KQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA- 637 KQ+T G+ + AR Y N + + + RR +++PFD I Sbjct: 294 KQLTSGEPVEARRLYKEPEI-LKDYARIACNCNSMPYSADTSFGFRRRLLIVPFDVKIDK 352 Query: 638 -NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAW 696 D A+KL W ++G+ +I G + ++ ++ TDT + Sbjct: 353 GKADPDLAKKL-KSELSGILIWAIEGLGRFIRNGKKLSKSSTLENLEQAYKEDTDTVVMF 411 Query: 697 IDD-CCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755 + C + SL +Y EY K + + LK +G++ +K Sbjct: 412 LSAKKCVPDNDNKIGLTSLFNNYREYCRDNNQ---KAETRENFKMKLKSEGYVVEEDNKK 468 Query: 756 IEKEWKSKRIIK 767 K + +I+ Sbjct: 469 GVKIGINSSMIR 480 >gi|315606065|ref|ZP_07881096.1| phage/plasmid primase [Actinomyces sp. oral taxon 180 str. F0310] gi|315312347|gb|EFU60433.1| phage/plasmid primase [Actinomyces sp. oral taxon 180 str. F0310] Length = 897 Score = 220 bits (560), Expect = 7e-55, Method: Composition-based stats. Identities = 99/673 (14%), Positives = 207/673 (30%), Gaps = 81/673 (12%) Query: 152 TPPHRFKVEDTPLLSEE-----DVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYT 206 TP + P + D+ + + P ++ S ++T + + Sbjct: 242 TPGPKRDPSSLPDIIGAFNRVYDIAAVIDAYSLPYTPAGPERWSYNYAETTGGLSLVEGR 301 Query: 207 NREITAFLSCFGEEFYNGSHDEWIPV----VMAVHHETRGSSKGKEIARRWSKQGSTYDE 262 + + S + V + A+H S+ + ++ S Sbjct: 302 ADLAISRHANTDPACIPDSRGGFHAVNAFDLAALHLFGNLDSEADRAKGPYEREASQAAM 361 Query: 263 ENFN-YKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSI-YK 320 E D ++ T + + + Sbjct: 362 EQLAARDPAVMREYAGTDFPQEPDTDRVRTVIAKTAEDTDSALADWCEPRLAGRLEYVSG 421 Query: 321 KGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNS 380 G LY+ W + + + + + + Sbjct: 422 AGFRLYSPSRGTW---------------------ETDNSKDNARTIKLVEDMLRERHMGI 460 Query: 381 KSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLET 440 + T R+N+ + K ++ + L+ + S D D++ L +G++DL T Sbjct: 461 VASGDSKRTQRDRKNLNK-GKIEAVTRLLQGRLLHS--PDEYDANPDILNVGNGVVDLRT 517 Query: 441 GQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGN-- 498 G+ T T+ T P+ +++ ++ E +F R VG A G Sbjct: 518 GELHPHTAAYRCTQYTPVPYRPAAIHKDWTAALAAL--PAESHPWFRRWVGQAATGYTPR 575 Query: 499 -KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLM 557 G+G +GK+TL+ ++ A G A + R N + + L Sbjct: 576 EDNTMLGIAAGIGANGKTTLLTAVRLALGTYAGTAAMDLLLSSPR-----NTNNTKMALY 630 Query: 558 GSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVR 617 G R V+I E E ++ ++K +TG + + L + + + E A+ + + N V Sbjct: 631 GKRFVLIEELPEG-RLDGVQVKAVTGTELIRGNLKFKDEF-EWRATHSLIVTTNNLPTVS 688 Query: 618 NPDDAWWRRYIVIPFDKPIANR---------DASFAQKL---ETKYTLEAKKWFLKGVKA 665 + WRR V+ F + DA Q+L ++ W ++G Sbjct: 689 EFSEGLWRRPFVLEFPYRFTSNPQAEADRPGDAGLTQRLLAPDSPALPAVLAWVVRGAVE 748 Query: 666 YISKGLDV-DIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQ 724 + + G V +P A ++ +D A+ +C L ++ + + Sbjct: 749 FYAHGQQVGALPAPISSATASWQEQSDVLLAFASECLVKDAGAVVPGSHLYAAFEAWLSE 808 Query: 725 ELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEW--------------KSKRIIKGLK 770 + S RT + G+ +K + R +G++ Sbjct: 809 QGAAS---WSQRTFRGRIASHGYFRDVKEGTHRWKKLTLSTWGAEARPTADKVRGYRGIR 865 Query: 771 LKPAFESVDDNSN 783 F + +D Sbjct: 866 ----FRTSEDERR 874 >gi|307578028|gb|ADN53647.1| primase-like protein [Staphylococcus aureus] Length = 787 Score = 219 bits (557), Expect = 2e-54, Method: Composition-based stats. Identities = 100/758 (13%), Positives = 230/758 (30%), Gaps = 85/758 (11%) Query: 15 HNGFKLIPLRLGDKR--PQRLGKWEEQLL-SSEKIDKLPACGFGFVCGVGEQPLYAFDID 71 + +P + R W + S E G GFV DID Sbjct: 38 QQNYGKVPYSINGYRASTTNKKTWCDFESVSIEYEVDEQYSGIGFVL-SDGNNFVCLDID 96 Query: 72 SKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGC 131 + ++ + + L F K + + + T +++ Sbjct: 97 NAIDEKGQINSELALKMMRLTYCEKSPSGTGLHCFF--KGKLPDNRKKKRTDLDIELYDS 154 Query: 132 GQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSI 191 ++ + + D + V+ FK + + ++ + Sbjct: 155 ARFMTVTGC------------TIGQNDICDNQEVLNTLVDEYFKENLPVNDVVREESNTN 202 Query: 192 IPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIP-----VVMAVHH----ETRG 242 ++ N + + ++ G+++ + V +H+ + Sbjct: 203 ------MQLSDEDIINIMMKSKQKDKIKDLLQGTYESYFESSSEAVQSLLHYLAFYTGKN 256 Query: 243 SSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGL 302 + + I ++ ++ + N W E+ K + T + +IP+G Sbjct: 257 KQQMERIFLNYNNLTDKWESKRGNTTW---GQLELDKAIKNQKTIYTKSIDEFNVIPQGS 313 Query: 303 LASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSM 362 K + + + +I + +I + + Sbjct: 314 KD-------VKQLLNQLGHEE-----------RTKMEENWIEEGKRGRKPTTI-SPIKCA 354 Query: 363 KEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQ----SLEAGSIFSIT 418 L+ D+ +N+K + F+ QN + S + S +A + Sbjct: 355 YILNEHLTFILFDDEENTKLAMYQFDEGIYTQNTTIIKRVISYLEPKHNSNKADEVIYHL 414 Query: 419 SDLLD-----SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ-----E 468 ++++D +S + ++G+ + +T Q T + T T + + Sbjct: 415 TNMVDIKEKTNSPYLIPVKNGVFNRKTKQLESFTPDYIFTTKISTKYNPNVVRPNLNGWD 474 Query: 469 FLDLVSGY-FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 F + +E++ + ++ G ++ I G G +GK T LI G Sbjct: 475 FDHWLYEIACADKEIVTLLWEVINDSMNGNYTRKKAIFFVGDGNNGKGTFQELISNLVGY 534 Query: 528 QYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI-NAAKIKQMTGGDC 586 + V + + ++ L L G +VI + I +++ K + GD Sbjct: 535 KNVASLKVNEFD---------HEFKLSVLEGKAVVIGDDVPVGINIEDSSNFKSVVTGDS 585 Query: 587 MTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQK 646 + + Y T N + RR +++PF+ + + + K Sbjct: 586 VLVNVKNKQPYRT-EFRCTVIQSTNGMPKFTDKTGGTNRRLLIVPFNADFNDSNENVDIK 644 Query: 647 LETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGEN 706 + ++ L KA + IP+V K E +Q D+ + + D Sbjct: 645 EKYLKDNHVLEYVL--YKAINLEFDRFTIPQVSKKMLEIYKQDNDSVYDFKIEEFDQWNI 702 Query: 707 LWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQ 744 + Y + E+ + +S RT ++ Sbjct: 703 QKVPKKVVYYRYRAFCEENGYMGK--MSDRTFYRRFEK 738 >gi|221213691|ref|ZP_03586665.1| phage/plasmid primase, P4 family [Burkholderia multivorans CGD1] gi|221166480|gb|EED98952.1| phage/plasmid primase, P4 family [Burkholderia multivorans CGD1] Length = 487 Score = 218 bits (555), Expect = 3e-54, Method: Composition-based stats. Identities = 79/537 (14%), Positives = 161/537 (29%), Gaps = 75/537 (13%) Query: 51 ACGFGFVCGVGEQPLYAFDIDSKDEKTA--NTFKDTFEILHGTPIVR--IGQKPKILIPF 106 + G + D+D K+ + + P R + + Sbjct: 15 DYNVAYATGPASGYVLVVDVDVKNGDATGLKSISRLEKEHGPLPPTRKVFTPSGGYHLIY 74 Query: 107 RMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLS 166 R + K + + +D+ G Y +A + Y + D P+L Sbjct: 75 RYPENL--KVPSRINFLPRVDVKAEGGYCLAPPSII-NDEPYFY----------DEPVLP 121 Query: 167 EEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSH 226 T K+ SK+ T N + E Sbjct: 122 ISRAPAWLLELLCSTQGTKPRKRKSAKSKSATIGNRNESVAFE----------------- 164 Query: 227 DEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRST 286 ++ + ++ Y+ N + + +I Sbjct: 165 ------GFSLLNAGLNP-------DLLEEELLEYNATNCDPPLSESEVSQIAANV----- 206 Query: 287 FTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSL 346 SR +D N S Y ++ K W +K + Sbjct: 207 -------ASSHQKNNDSVSRATDLGNAKRMSELYSDTLRYVSEMKRWLEKSPSG------ 253 Query: 347 TLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTA 406 + + L+ +E + + +E N ++ + E N K Sbjct: 254 -AWRFIDE-LRVLLLAREIIPMIHDEIRRLNPGNRRELM-----DHAKYSESNKALKDAV 306 Query: 407 QSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPS 466 + + ++++ LD ++G++DL TG+ + L+IT++ G F Sbjct: 307 ELFRSEPGIAVSASNLDEGEWMFPAKNGLVDLRTGKFMPMDPALHITQTAGVNFDPDATC 366 Query: 467 QEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF 525 + + + E+++Y R +G L G G +GKST +NL++ F Sbjct: 367 PRWEAFLLEIMNGNVELVEYLRRAIGYTLTCQTSEHALFFAFGSGANGKSTFLNLLRALF 426 Query: 526 GNQYVINAEASDIMQNRPP--EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQ 580 G+ + +N + ++ + RL+G R+V +SE E + +K Sbjct: 427 GDLGAQANGDMLLDKNGGQAMSSNASSSEVARLVGKRLVAMSEVEEGRHFSEKTVKW 483 >gi|206600076|ref|YP_002242151.1| gp94 [Mycobacterium phage Konstantine] gi|206287164|gb|ACI12509.1| gp94 [Mycobacterium phage Konstantine] Length = 995 Score = 218 bits (554), Expect = 4e-54, Method: Composition-based stats. Identities = 82/419 (19%), Positives = 163/419 (38%), Gaps = 39/419 (9%) Query: 380 SKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLE 439 + + N A + + +A ++ + LD+ R +G +G+++L Sbjct: 571 KALQARLRSWKEFAKASGNNRNAMAALDAAKALPGVTVDINDLDNDGRLIGVANGVIELG 630 Query: 440 TGQKVKPTKE--LYITKSTGTPFVEGEPS--------QEFLDLVSGYFESEEVMDYFTRC 489 E +IT +T TP++E + Q++ + + + E++ Sbjct: 631 VDGVRLRDAEAQDFITLNTKTPYLEPDQMSGTQKIGMQKWEEYLERFLPDEDIRRTAQVA 690 Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549 +G L+GGN + FI ++G +GKST+ NL A G+ + + + K Sbjct: 691 LGHCLIGGNPEKIFIVLKGDSNTGKSTMANLCAAALGDYAMTASLTI-------YQNHKL 743 Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGG-DCMTARLNYGNTYSESPASFTPFI 608 NP L + + R+V+ +E +E D+I+A+ +K++TGG D ++A L N E F P + Sbjct: 744 NPLLAKALTRRMVVTTELSETDKISASMLKRITGGSDLISAELKGSNVLVERVPQFVPIV 803 Query: 609 VPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKY--TLEAKKWFLKGVKAY 666 N + D A R VIPF+ ++ ++ K W ++G K Y Sbjct: 804 ATNSVPSIEGADKALRNRLYVIPFNVVVSEQEDDKEAATVMKAVGLPAVLHWLVEGYKIY 863 Query: 667 ISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE----NLWEES----------H 712 + P + + + DT ++ C + Sbjct: 864 RRERGLPKDPRIVQE-SDAFASELDTVSTFLSQCVKKHPTNFGDPKIPWQDHPGWVILPD 922 Query: 713 SLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771 L ++Y + + + R+S + + G ++++ K + G+KL Sbjct: 923 DLYEAYWNWCNRMKVREPDRLSQPKFSRRVAAMG----HNKKQLRGPKKPTQHWYGIKL 977 Score = 47.6 bits (111), Expect = 0.009, Method: Composition-based stats. Identities = 49/389 (12%), Positives = 95/389 (24%), Gaps = 93/389 (23%) Query: 2 PVMQWKEQAKQAIHNGFK-LIPLRLGDKRPQRLG--KWEEQLLSSEKIDKLPAC------ 52 + + + G+ +PL G K P G + S EK+ Sbjct: 11 AARPFAKAVSKYRRAGWGGTLPLPAGKKNPPPTGFTGHKAPYPSKEKLVSWLNDPKHKRA 70 Query: 53 GF--------------GFVCGVGEQP--------------LYAFDIDS-----KDEKTAN 79 G CG + D+D KD++ + Sbjct: 71 NICIRLAGTPAIKTDEGCTCGKLVGGTHAQNCEAKEEKYEIVGIDVDHYVKGDKDKRGGD 130 Query: 80 TFKDTFEILHGTPIVRIGQ----KPKILIPFRMNKEGIKKKKTTESTQGHLD-ILGCGQY 134 + L P I + +R+ ++ I ++ Sbjct: 131 QLEALEARLGKLPDTWISSARVDGKSGIRYYRVPVGL----AFRGQVDKDIECIYKGYRF 186 Query: 135 -FVAYNIHPKTKKEYTWTTPPHRFK-----------------VEDTPLLSEEDVEYLFKF 176 V +I+P T W PP V D PLL +++L + Sbjct: 187 AVVWPSINPDTGGTQYWWFPPGVVPNEEGRKAWDGENGDVPRVADLPLLPSPWLDHLTQG 246 Query: 177 FQEITVPLVKDKKSIIPSK-----------------TWTNNNNRQYTNREITAFLSCFGE 219 D S + T + + + + Sbjct: 247 LMRADDDAEIDMDSSVEEIYRWADDTFNASGVVEHDDGTAEVDETQICARVKKSIGQHTD 306 Query: 220 EFYNG--SHDEWIPVVMAVHHETRGSSKGKE-----IARRWSKQGSTYDEENFNYKWDTF 272 + N SHD+ + G + I + W+++ D+ + Sbjct: 307 KITNEATSHDKITNAHWEFYRLAAEGHIGWKAAVAQIEKIWTEEVVARDKRGRAELRNEI 366 Query: 273 DFEEIGDTAKKRSTFTSLFYHHGKLIPKG 301 + K ++ + +P G Sbjct: 367 FRSRVNALRKIKTRVDRNIAIGARAVPSG 395 >gi|298693735|gb|ADI96957.1| putative DNA primase [Staphylococcus aureus subsp. aureus ED133] Length = 787 Score = 218 bits (554), Expect = 4e-54, Method: Composition-based stats. Identities = 100/758 (13%), Positives = 230/758 (30%), Gaps = 85/758 (11%) Query: 15 HNGFKLIPLRLGDKR--PQRLGKWEEQLL-SSEKIDKLPACGFGFVCGVGEQPLYAFDID 71 + +P + R W + S E G GFV DID Sbjct: 38 QQNYGKVPYSINGYRASTTNKKTWCDFESVSIEYEVDEQYSGIGFVL-SDGNNFVCLDID 96 Query: 72 SKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGC 131 + +K + + L F K + + + T +++ Sbjct: 97 NAIDKKGQINSELALKMMQLTYCEKSPSGTGLHCFF--KGKLPDNRKKKRTDLDIELYDS 154 Query: 132 GQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSI 191 ++ + + D + ++ FK + + ++ + Sbjct: 155 ARFMTVTGC------------TIGQSDICDNQEVLNTLIDEYFKENLPVNDVVREESNTN 202 Query: 192 IPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIP-----VVMAVHH----ETRG 242 ++ N + + ++ G+++ + V +H+ + Sbjct: 203 ------MQLSDEDIINIMMKSKQKDKIKDLLQGTYESYFESSSEAVQSLLHYLAFYTGKN 256 Query: 243 SSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGL 302 + + I ++ ++ + N W E+ K + T + +IP+G Sbjct: 257 KQQMERIFLNYNNLTDKWESKRGNTTW---GQLELDKAIKNQKTIYTKSIDEFNVIPQGS 313 Query: 303 LASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSM 362 K + + + +I + +I + + Sbjct: 314 KD-------VKQLLNQLGHEE-----------RTKMEENWIEEGKRGRKPTTI-SPIKCA 354 Query: 363 KEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQ----SLEAGSIFSIT 418 L+ D+ +N+K + F+ QN + S + S +A + Sbjct: 355 YILNEHLTFILFDDEENTKLAMYQFDEGIYTQNTTIIKRVISYLEPKHNSNKADEVIYHL 414 Query: 419 SDLLD-----SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ-----E 468 ++++D +S + ++G+ + +T Q T + T T + + Sbjct: 415 TNMVDIKEKTNSPYLIPVKNGVFNRKTKQLESFTPDYIFTTKISTKYNPNVVRPNLNGWD 474 Query: 469 FLDLVSGY-FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 F + +E++ + ++ G ++ I G G +GK T LI G Sbjct: 475 FDHWLYEIACADKEIVTLLWEVINDSMNGNYTRKKAIFFVGDGNNGKGTFQELISNLVGY 534 Query: 528 QYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI-NAAKIKQMTGGDC 586 + V + + ++ L L G +VI + I +++ K + GD Sbjct: 535 KNVASLKVNEFD---------HEFKLSVLEGKAVVIGDDVPVGINIEDSSNFKSVVTGDS 585 Query: 587 MTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQK 646 + + Y T N + RR +++PF+ + + + K Sbjct: 586 VLVNVKNKQPYRT-EFRCTVIQSTNGMPKFTDKTGGTNRRLLIVPFNADFNDSNENVDIK 644 Query: 647 LETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGEN 706 + ++ L KA + IP+V K E +Q D+ + + D Sbjct: 645 EKYLKDNHVLEYVL--YKAINLEFDRFTIPQVSKKMLEIYKQDNDSVYDFKIEEFDQWNI 702 Query: 707 LWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQ 744 + Y + E+ + +S RT ++ Sbjct: 703 QKVPKKVVYYRYRAFCEENGYMGK--MSDRTFYRRFEK 738 >gi|194100701|ref|YP_002003450.1| gp92 [Mycobacterium phage Predator] gi|192758417|gb|ACF05189.1| gp92 [Mycobacterium phage Predator] Length = 987 Score = 217 bits (553), Expect = 5e-54, Method: Composition-based stats. Identities = 87/444 (19%), Positives = 167/444 (37%), Gaps = 42/444 (9%) Query: 344 WSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKN------SKSPRFWFNTDYRRQNVE 397 W D+ A + ++ + + + + + + Sbjct: 513 WQRVRDRQEAYVTFLEADVQNQIAQFTAANPNVGASAFPAALKAVQAKLRSWREFAKASG 572 Query: 398 ENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKE--LYITKS 455 N + + + +A ++ + LD+ R +G +G+L+L + + E IT + Sbjct: 573 NNRNSLAALDAAKALPGVTVDINDLDNDGRLIGVANGVLELGVDEVRRRDAEARDLITLN 632 Query: 456 TGTPFVEGEPS--------QEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIR 507 T TP++E E +++ + + + EE+ +G L+GGN + FI ++ Sbjct: 633 TSTPYLEIEDMTGTQKIGVEKWQEYLERFLPDEEIRRTAQVALGHCLIGGNPEKIFIILK 692 Query: 508 GVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISET 567 G +GKST+ NL A G+ + K NP L + + R+V+ +E Sbjct: 693 GESNTGKSTMANLCAAALGDYA-------MTAGLSIYQNHKLNPMLAKALTRRMVVTTEL 745 Query: 568 NENDEINAAKIKQMTGG-DCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRR 626 +E D+I+A+ +K++TGG D ++A L N E F P + N + D A R Sbjct: 746 SETDKISASMLKRITGGSDLISAELKGSNVLVERVPQFVPIVATNAVPDIEGADKALRNR 805 Query: 627 YIVIPFDKPIANRDASFAQKLETKY--TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKE 684 VIPF+ ++ ++ + K W ++G K Y + P + + + Sbjct: 806 LYVIPFNVVVSEQEDDKEAAMIMKAVGLPAILNWLVEGYKIYRREKGLPKDPRIIKE-SD 864 Query: 685 EERQGTDTYQAWIDDCCDIGENLWE---------------ESHSLAKSYSEYREQELNYD 729 DT ++D C + S +L K+Y + E Sbjct: 865 AFAAELDTVSTFVDQCLRKHPTAYADPKFDWTGVGKQWVLTSDALYKTYQRWCETMNVNQ 924 Query: 730 RKRISTRTVTLNLKQKGFIGGIKR 753 R+ + L G+ R Sbjct: 925 REILDHPKFNKRLLSLGWPKKQMR 948 >gi|317485315|ref|ZP_07944195.1| phage/plasmid primase [Bilophila wadsworthia 3_1_6] gi|316923441|gb|EFV44647.1| phage/plasmid primase [Bilophila wadsworthia 3_1_6] Length = 563 Score = 217 bits (553), Expect = 5e-54, Method: Composition-based stats. Identities = 89/514 (17%), Positives = 188/514 (36%), Gaps = 48/514 (9%) Query: 298 IPKGLLASRFSDAY--NKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITAS- 354 + ++ + F + + +F+ + + D+ + + + + Sbjct: 36 LTNEVIRTYFDEDGVGDGKLFNRLHRDKIVGVIDSDDFLFWNGAHWEKAKEKQEFRAIED 95 Query: 355 ---IMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTA-QSLE 410 + L KE FD ++ +D + + + R + + + + + Sbjct: 96 VVRLYERLAVEKEKEFDSVDKRDDPDLKKELQKQLGAIRRRIKTLRDAPGQDNLKKMTAR 155 Query: 411 AGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVE-----GEP 465 + + LD R L +G+++LETG+ + Y+ + T + +P Sbjct: 156 VDPPLLVYPEQLDDKPRLLPCPNGVINLETGELEQGRPRDYLLTACETEYDPGLLDVEDP 215 Query: 466 SQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGV-GGSGKSTLMNLIKY 523 D + +E++ + R +G L+ K F+ G G +GK TL+ LI Sbjct: 216 CPVANDFLLRSMDGDKELVAFIWRLLGYGLIRERKDHIFMIFHGEHGRNGKDTLIKLITT 275 Query: 524 AFGNQYVINAEASDIMQNRP-PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMT 582 G + ++Q + +P ++RL G I I+E EN + AK+K+++ Sbjct: 276 TLGKALSGDVPVEMLLQTPNVKNSSGPSPDVMRLRGMCIAWINEAEENQKFALAKLKKLS 335 Query: 583 GGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--- 639 GG +T R Y + + P + N+ + D A+W+R +++ ++ N+ Sbjct: 336 GGSYITGRSPYSKEETSWKQTHLPIMTTNELPKAKADDAAFWQRALILKWNLSFVNKPDP 395 Query: 640 --------DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTD 691 D +KLE K ++G Y+ G + +PE + E +R D Sbjct: 396 AKPYQRQADKYLDEKLE-KERKGVLARMVRGAIEYLKYG-GLQVPEKVYRWTESQRTNWD 453 Query: 692 TYQAWIDDCCDIGENLW--------EESHSLAKSYSEYREQELNYDRKRISTRTVTLNLK 743 ++ + C + L +++ + + + R IS + L Sbjct: 454 DLAQFLSEWCVREPGHERIEDYKTSISATDLHEAFCLWYARYKD-RRFSISAKKFAEML- 511 Query: 744 QKGFIGGIKREKIEKEWKSKRIIK-GLKLKPAFE 776 +K KS I + G+ L P + Sbjct: 512 ---------NKKEIPSKKSNGIWRLGITLTPDAD 536 >gi|299531535|ref|ZP_07044941.1| Phage/plasmid primase P4 [Comamonas testosteroni S44] gi|298720498|gb|EFI61449.1| Phage/plasmid primase P4 [Comamonas testosteroni S44] Length = 420 Score = 216 bits (550), Expect = 1e-53, Method: Composition-based stats. Identities = 69/409 (16%), Positives = 139/409 (33%), Gaps = 51/409 (12%) Query: 342 YIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSK 401 Y W+ T + +K+ + +++ S + +++E Sbjct: 30 YRWTGTHWSMVDDE----SGVKQAMRWIADGNHGIVNPSNAKSTHQTALLWLPSLKETHS 85 Query: 402 AKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLE-TGQKVKPTKELYITKSTGTPF 460 + ++G L L+ T + K+L I F Sbjct: 86 RA------------------------IIPVKNGYLHLDGTPSLLPHDKKLGIRHVLDCNF 121 Query: 461 VEGEPSQ-EFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMN 519 + EF L+ EV D G LL + Q G G +GK TL N Sbjct: 122 DPAAATPTEFFKLLERILPDAEVRDRVQEYCGYTLLPDARFQCAQLWVGSGANGKGTLAN 181 Query: 520 LIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIK 579 +++ N+ + D ++G+ ++ E ND +K Sbjct: 182 ILQALHTNKAAASPNKLD------------GFHAATVLGASLLYCDEAPPND-WCEQTLK 228 Query: 580 QMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA-- 637 M G+ + Y + + I+ N +++ + +WRR+ V+PF I Sbjct: 229 SMVAGESVAIDRKYL-PPITARVTGKWLILANHIPAIKDQSNGFWRRFGVVPFPVSIPAA 287 Query: 638 NRDASFAQKLETKYTLEAKKWFLKGVKAYISKG-LDVDIPEVCLKAKEEERQGTDTYQAW 696 RD A+++ W ++G++ + +G D ++P A + + T++ +W Sbjct: 288 ERDPLLAERIIKHELSAVLNWAVEGLQRLLLRGRFDPNMPRAMQNAIQSAKVETNSVHSW 347 Query: 697 IDD-CCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQ 744 I D ++ +L + YS + +Q +S L++ Sbjct: 348 ISDAAIELMTDLSTAKAEVYAVYSAWCKQNGMLA---VSAPKFWKRLQE 393 >gi|299536247|ref|ZP_07049560.1| hypothetical protein BFZC1_09515 [Lysinibacillus fusiformis ZC1] gi|298728233|gb|EFI68795.1| hypothetical protein BFZC1_09515 [Lysinibacillus fusiformis ZC1] Length = 599 Score = 216 bits (550), Expect = 1e-53, Method: Composition-based stats. Identities = 77/534 (14%), Positives = 164/534 (30%), Gaps = 52/534 (9%) Query: 263 ENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKG 322 + E + + L + + + + Sbjct: 100 RECENLISSVRILEPTARINENNLPGYLSDSDLNNVKQSSQKIGYEKIIPSQKKDVQGTQ 159 Query: 323 HFLYTADTKAWYKKDK---------NNVYIWSLT--LDKITASIMNFLVSMKEDVFDLSE 371 LY T + + + + T L D+F Sbjct: 160 DPLYDKKTNSQIIHNHTLAELLIDTHKFAVIEGNLYYWNQTLGYFVGLTGENADIF---- 215 Query: 372 EPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGE 431 N + ++ + + + + A + +LL F+ Sbjct: 216 -------------IRQNIPDKYKSRISFNSCQEILRWIMAKDEMKVNEELLVPRKSFVAF 262 Query: 432 QDGILDLETGQKVKPTKELYITKSTGTPFV--EGEPSQEFLDLVSGYFE-SEEVMDYFTR 488 + I++++ + + T + F +S + + Sbjct: 263 SNCIINIKDFSAHSHDPDYFFTSVLNAEYPLRSIPKGPVFESFISQITGGDQRLYMRLQE 322 Query: 489 CVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGK 548 G + + ++ GV SGKS ++ L+++ G + N S++ Q Sbjct: 323 LFGYVISEIRDVKVIPYLVGVKDSGKSIILRLLEHLVGPNFFTNLSFSELNQQ------- 375 Query: 549 ANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFI 608 L +L ++ ET+E K+++GGD + AR YG + + Sbjct: 376 --SFLCQLFEKKLNTCGETSEIALNRLDNFKKLSGGDYVMARYLYGQAF-KFINKAALIF 432 Query: 609 VPNKHLFVR--NPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVK 664 N ++ + +A+ R ++ PF+ + +D KL K T W L G++ Sbjct: 433 AGNHLPTIKGIDKSNAFSERLVIFPFNHQVPKEEQDIHLFDKL-MKETSYIAHWALIGLQ 491 Query: 665 AYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQ 724 +I E K E + T++ ++I CC + + + L +Y +Y Sbjct: 492 RWIDNNYQFTTCEQIEKMAREYSEQTNSIDSFIKSCCYMNPDSKTHNDVLETAYKKYCRS 551 Query: 725 ELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESV 778 + S+R N+K I + + + ++K G+ LK V Sbjct: 552 YGMIEE---SSRMFHKNMKT---ITNLTYSRFRLKNENKYGYIGIGLKDTTYEV 599 >gi|301063354|ref|ZP_07203893.1| phage/plasmid primase, P4 family, C-terminal domain protein [delta proteobacterium NaphS2] gi|300442517|gb|EFK06743.1| phage/plasmid primase, P4 family, C-terminal domain protein [delta proteobacterium NaphS2] Length = 820 Score = 216 bits (550), Expect = 1e-53, Method: Composition-based stats. Identities = 62/358 (17%), Positives = 128/358 (35%), Gaps = 25/358 (6%) Query: 419 SDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE 478 + L+ + L +G+L +ET + + + F + +++ ++ F Sbjct: 476 PEELEFNPMLLNIANGMLHVETMEIKPHSPDYNSRVQLPVSFRKDATCTRWIEAIAQIFS 535 Query: 479 SE-EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537 + D G AL I G G +GK + ++ G V + + Sbjct: 536 DDLSKADVLQEFFGYALYPRILFPCCIFQIGQGRNGKGVVEKILCAMLGRANVSHVSLAR 595 Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597 + +N P + + G + ET ++ K++ GD + A+ Y Sbjct: 596 MEENFGP---------VEIEGKLLNSCGETEA-KPLDVTNFKKIVAGDEIQAQRKYL-PD 644 Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEA 655 + + N V+ DA++RR IV+ + + + D KL + Sbjct: 645 VKFTPIAKHLVSMNAFPGVKEKTDAFFRRIIVLEYRQKFEGEDDDKRLVDKL-LEELDGI 703 Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIG-----ENLWEE 710 KW L+G+K +++ ++ PE AKE R+ + A++ + C + N+ Sbjct: 704 FKWSLEGLKRVLARE-EIASPEAVSIAKERFREKVNPVIAFVKEACMLDVDAIQTNVKVL 762 Query: 711 SHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKG 768 L ++Y + E+ + + + F KR +E + G Sbjct: 763 PADLYRAYGSWMEE---AKLRSLGKNNFYEQIL-LNFPHVKKRRDGTRELFFGIGLLG 816 >gi|188588977|ref|YP_001919584.1| putative primase [Clostridium botulinum E3 str. Alaska E43] gi|188499258|gb|ACD52394.1| putative primase [Clostridium botulinum E3 str. Alaska E43] Length = 712 Score = 215 bits (548), Expect = 2e-53, Method: Composition-based stats. Identities = 98/809 (12%), Positives = 205/809 (25%), Gaps = 155/809 (19%) Query: 20 LIPLRLG---DKRP----QRLGKWEEQLLSSEKIDKLPACGF---GFVCGVGEQPLYAFD 69 LIP+ K P W + +K +CG + D Sbjct: 14 LIPIVPLFNYSKVPTIKWNDKDNWITSKEYIFE-EKYSNKNITGFSLICGEP-GGIMVID 71 Query: 70 IDSKDEKTA----NTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQ-- 123 ID + +F D + L +I + P K ++ +S Sbjct: 72 IDRNHGDGSIDGQKSFDDLIKKLSTEDKQQISSTFAVKTPNGGTHIYFKYREGLKSKANY 131 Query: 124 -GHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITV 182 +DI G V N K +E + + + P + + + + Sbjct: 132 VPGVDIRTDGGLIVLPNSSVKIGEETREYKIFNNTNINEIP---QTLFDKFLE-LDKPNK 187 Query: 183 PLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHE--- 239 K PS + + Q +E+ +S + + Sbjct: 188 KKSKKVSEAKPSTIYKEGSRNQELFKEVIKIISKSSIR-------DITTITSITKGLNLL 240 Query: 240 -TRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLI 298 + +EI++ N K + + + Sbjct: 241 KCNPPLEDEEISKIIGSISQRLHPSYCNEKGNI-----------NNYSLAEHIIENQPS- 288 Query: 299 PKGLLASRFSDAYNKAMFSIYKKGHFLYTADTK-AWYKKDKNNVYIWSLTLDKITASIMN 357 Y KG+ + D K +Y+ Sbjct: 289 --------------------YTKGNLWFIYDDKQGFYRY--------------------- 307 Query: 358 FLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSI 417 E ++ N + +N S +A + Sbjct: 308 ---------------MEFKEVQRMFFKYAINDTDKTPIRSKNFAELLMLLSEDAREVHDE 352 Query: 418 TSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTP-------FVEGEPSQEFL 470 ++ +G++D+E + ++ + + + EF Sbjct: 353 --------KCYINCLNGVIDIENNRLLEHGPQYKTEVQFQASLITDPKVWKDKFDKSEFK 404 Query: 471 DLVSGYFESEEVMDYFTRCVGMALLGGNKA-QRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529 ++ + G+ L + Q +G G +GKS ++ + G+ Sbjct: 405 KFLNDIL-DNGSIKTLQEAWGVMLSPHAREVQNCFIYKGEGSNGKSVTFDIQEALIGDNK 463 Query: 530 VINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTA 589 I + N ++ G + I+ + + + K M G+ +T Sbjct: 464 HI--------CSIGLGDFGENFAISVAEGKHVNIVRDDELSGKSVNKAFKSMCCGEPVTV 515 Query: 590 RLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN----------- 638 + + T F N+ + ++RR I+IPF+ Sbjct: 516 NRKNKDL-VRLGFNMTMFFGLNRMPSASDKSTGFFRRPIIIPFNTSFGTEKEVAEGTRDK 574 Query: 639 -RDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWI 697 +D + ++ W G+ S V + EE R D+ A+ Sbjct: 575 LKDTQISDRIINNELDLVFTWAYYGLNRVKSNNWKVTVSAAAENEMEEYRAEVDSAYAFF 634 Query: 698 DDCCDIGE--NLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755 + I + + Y+ + + ++ + G + Sbjct: 635 KEKITIVPKKGMKIPKKDIYDIYNNWCTENHIA---PMNQTHLGRQFASFGVKSKV---- 687 Query: 756 IEKEWKSKRIIKGLKLKPAFESVDDNSNI 784 S R + L E V +I Sbjct: 688 ----SNSVRYYLDI-LVDDLEPVPTQKDI 711 >gi|283469703|emb|CAQ48914.1| putative primase [Staphylococcus aureus subsp. aureus ST398] Length = 787 Score = 215 bits (547), Expect = 2e-53, Method: Composition-based stats. Identities = 100/758 (13%), Positives = 230/758 (30%), Gaps = 85/758 (11%) Query: 15 HNGFKLIPLRLGDKR--PQRLGKWEEQLL-SSEKIDKLPACGFGFVCGVGEQPLYAFDID 71 + +P + R W + S E G GFV DID Sbjct: 38 QQNYGKVPYSINGYRASTTNKKTWCDFESVSIEYEVDEQYSGIGFVL-SDGNNFVCLDID 96 Query: 72 SKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGC 131 + ++ + + L F K + + + T +++ Sbjct: 97 NAIDEKGQINSELALKMMRLTYCEKSPSGTGLHCFF--KGKLPDNRKKKRTDLDIELYDS 154 Query: 132 GQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSI 191 ++ + + D + V+ FK + + ++ + Sbjct: 155 ARFMTVTGC------------TIGQNDICDNQEVLNTLVDEYFKENLPVNDVVREESNTN 202 Query: 192 IPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIP-----VVMAVHH----ETRG 242 ++ N + + ++ G+++ + V +H+ + Sbjct: 203 ------MQLSDEDIINIMMKSKQKDKIKDLLQGTYESYFESSSEAVQSLLHYLAFYTGKN 256 Query: 243 SSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGL 302 + + I ++ ++ + N W E+ K + T + +IP+G Sbjct: 257 KQQMERIFLNYNNLTDKWESKRGNTTW---GQLELDKAIKNQKTIYTKSIDEFNVIPQGS 313 Query: 303 LASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSM 362 K + + + +I + +I + + Sbjct: 314 KD-------VKQLLNQLGHEE-----------RTKMEENWIEEGKRGRKPTTI-SPIKCA 354 Query: 363 KEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQ----SLEAGSIFSIT 418 L+ D+ +N+K + F+ QN + S + S +A + Sbjct: 355 YILNEHLTFILFDDEENTKLAMYQFDEGIYTQNTTIIKRVISYLEPKHNSNKADEVIYHL 414 Query: 419 SDLLD-----SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ-----E 468 ++++D +S + ++G+ + +T Q T + T T + + Sbjct: 415 TNMVDIKEKTNSPYLIPVKNGVFNRKTKQLESFTPDYIFTTKISTKYNPNVVRPNLNGWD 474 Query: 469 FLDLVSGY-FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 F + +E++ + ++ G ++ I G G +GK T LI G Sbjct: 475 FDHWLYEIACADKEIVTLLWEVINDSMNGNYTRKKAIFFVGDGNNGKGTFQELISNLVGY 534 Query: 528 QYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI-NAAKIKQMTGGDC 586 + V + + ++ L L G +VI + I +++ K + GD Sbjct: 535 KNVASLKVNEFD---------HEFKLSVLEGKAVVIGDDVPVGINIEDSSNFKSVVTGDS 585 Query: 587 MTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQK 646 + + Y T N + RR +++PF+ + + + K Sbjct: 586 VLVNVKNKQPYRT-EFRCTVIQSTNGMPKFTDKTGETNRRLLIVPFNADFNDSNENVDIK 644 Query: 647 LETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGEN 706 + ++ L KA + IP+V K E +Q D+ + + D Sbjct: 645 EKYLKDNHVLEYVL--YKAINLEFDRFTIPQVSKKMLEIYKQDNDSVYDFKIEEFDQWNI 702 Query: 707 LWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQ 744 + Y + E+ + +S RT ++ Sbjct: 703 QKVPKKVVYYRYRAFCEENGYMGK--MSDRTFYRRFEK 738 >gi|94970778|ref|YP_592826.1| primase P4-like protein [Candidatus Koribacter versatilis Ellin345] gi|94552828|gb|ABF42752.1| primase P4-like protein [Candidatus Koribacter versatilis Ellin345] Length = 799 Score = 215 bits (546), Expect = 3e-53, Method: Composition-based stats. Identities = 90/635 (14%), Positives = 179/635 (28%), Gaps = 59/635 (9%) Query: 166 SEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFG------- 218 + + E V + + ++ Q + ++ + Sbjct: 189 RPWRLSAIVSKGSETAVTAQQLGSI-SSIRLSSHKTPEQADDLNLSRLMEFLDYYGVSVR 247 Query: 219 --EEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQG-STYDEENFNYKWDTFDFE 275 I A H G W F E Sbjct: 248 SKPRSVRDGFRVEIECPWAEEHSGETRRDTTVSFIEGVGNGFHCLHSHCTERHWREFRTE 307 Query: 276 EIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYK 335 ++ LF + + G + A F Y Sbjct: 308 ------LEKRHPGRLFSFGPEAVFGGGSLPLIAHATLAEAFLRDNHDFVCI-------YD 354 Query: 336 KDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQN 395 + K + W T I+ +++ +D + P ++ R Sbjct: 355 QPKRPIAQWVKTRWDISEDDTLLW-------RAVADYLKDLHPRYPKPEKGPDS---RMR 404 Query: 396 VEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDG-ILDLETGQKVKPTKELYITK 454 + + + ++ + +L D LG + ++DL T +E YIT+ Sbjct: 405 FYDAAFIGGVVRCVKPYLP-PVKGELFDRDPHLLGLPNCRLIDLRTNATRDMRREDYITQ 463 Query: 455 STGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSG 513 P+ F +S + +Y R + L Q + G G +G Sbjct: 464 RIDVAPDPNCPTPRFDRFISEITCGDGPLANYLLRLCALCLTA-IPFQALFFLWGRGRNG 522 Query: 514 KSTLMNLIKYAFGNQYVINA--EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEND 571 K L+ + G+ + EA K L G R+ ++E+ + Sbjct: 523 KGVLIRTLTAILGDGKFAWPLRPGEITVSKFGDEAAKRTF--ANLKGRRLATVNESVAGN 580 Query: 572 EINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIP 631 +N + +K ++GGD +T N + + N + D A+ R +IP Sbjct: 581 -LNTSMLKLISGGDTLTG-ANMRQDQQAFKPTHKVLLPTNDRPQLP-ADPAFRGRVHMIP 637 Query: 632 FDKPIANR-DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGT 690 F R D + L+ F+ I GL P L E+ Sbjct: 638 FLANFTGREDTNLDHVLQHVELPGILYRFVTLCPDVIENGLRP--PASVLAETEQLFSEL 695 Query: 691 DTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLN---LKQKGF 747 D + + DDC +I + + + + + + ++ S+ + L++ Sbjct: 696 DITKQFRDDCLEIVDGAETPAADVERVVNSWVREQSTTGIVVSSSGREGPDDVILRELKH 755 Query: 748 IGGIKREKIEKEWKSKR--------IIKGLKLKPA 774 IK ++ ++ G++LK Sbjct: 756 QPDIKYSRLRRKTGETSPHGKGKAWYFVGVRLKEE 790 >gi|227487378|ref|ZP_03917694.1| phage/plasmid primase P4 family protein [Corynebacterium glucuronolyticum ATCC 51867] gi|227092602|gb|EEI27914.1| phage/plasmid primase P4 family protein [Corynebacterium glucuronolyticum ATCC 51867] Length = 497 Score = 215 bits (546), Expect = 3e-53, Method: Composition-based stats. Identities = 67/450 (14%), Positives = 129/450 (28%), Gaps = 26/450 (5%) Query: 336 KDKNNVYIWSL--TLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR 393 ++W T + + K+ E+ D N N Sbjct: 56 YLGKVWHVWDGRKFARVPTDDDLRQVYLYKKLETAYYEKTPDRNSNEVVKTEVNPDSAML 115 Query: 394 QNVEENSKAKSTAQSLEAGSIFSITSD---LLDSSSRFLGEQDGILDLETGQKVKPTKEL 450 V + K + I L + +GILD T + T L Sbjct: 116 ARVIDPLKGLVMRRDGLDERHMWIQDTGRGDLPKGGLLIPMANGILDANTRKMYDHTPNL 175 Query: 451 YITKSTGTPFVEGEPSQEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGV 509 T + + + V G + + + +G + G +A + + + G Sbjct: 176 VATWVLPFDYDKEAACPHWKKFVGGILDEDKTGQTFLQEWIGYLISGQTRAHKAVLVTGA 235 Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569 SGK + ++I+ G + + + L L G IS++ + Sbjct: 236 PRSGKGVMASVIRALMGEENTAATTLTSLGG---------RFGLANLEGKNYAFISDSRD 286 Query: 570 NDEIN--AAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627 ++ ++ + D M G + I N + +A R+ Sbjct: 287 SNMNAQATERLLSIIANDVMAVEPK-GKDIVTRRLNVRLMIFSNNVPRFPDSGNAIGTRF 345 Query: 628 IVIPFDK-PIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDV-DIPEVCLKAKEE 685 I + + D ++L W L G+ + G +P E Sbjct: 346 ICLDLPHSHVGKEDQGLTERL-LGELPGILNWALDGLDRLRANGWKFTTLPGTHAGILET 404 Query: 686 ERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK 745 + ++ + N + Y E+ E+ + K + T LK Sbjct: 405 VNEQASPLTPYVRERLQFDPNAITALKEVYNDYKEWCEE---GNYKVSTKGTFKERLKAL 461 Query: 746 GFIG--GIKREKIEKEWKSKRIIKGLKLKP 773 G + R K+ K ++G KL P Sbjct: 462 RLDGVKVLSRTKVPSYDKLVDAVRGAKLNP 491 >gi|283768124|ref|ZP_06341039.1| primase superantigen-encoding pathogenicity islands SaPI [Staphylococcus aureus subsp. aureus H19] gi|283462003|gb|EFC09087.1| primase superantigen-encoding pathogenicity islands SaPI [Staphylococcus aureus subsp. aureus H19] Length = 787 Score = 214 bits (545), Expect = 4e-53, Method: Composition-based stats. Identities = 95/748 (12%), Positives = 225/748 (30%), Gaps = 81/748 (10%) Query: 27 DKRPQRLGKWEEQLLSSEKIDKL-----------PACGFGFVCGVGEQPLYAFDIDSKDE 75 K P + + + + G GFV DID+ + Sbjct: 42 GKVPYSINGYRASTTNKKTWCDFESVSIEYEVDEQYSGIGFVL-SDGNNFVCLDIDNAID 100 Query: 76 KTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYF 135 K + + L F K +KK + +++ ++ Sbjct: 101 KKGQINSELALKMMQLTYCEKSPSGTGLHCFFKGKLPDNRKKKRTDLE--IELYDSARFM 158 Query: 136 VAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSK 195 + + D + V+ ++F+E ++ S Sbjct: 159 TVTGC------------TIGQSDICDNQEVLNTLVD---EYFKENLPVNDIVREE---SN 200 Query: 196 TWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIP-----VVMAVHH----ETRGSSKG 246 T ++ N + + ++ G+++ + V +H+ + + Sbjct: 201 TNMQLSDEDIINIMMKSKQKDKIKDLLQGTYESYFESSSEAVQSLLHYLAFYTGKNKQQM 260 Query: 247 KEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASR 306 + I ++ ++ + N W + ++ K T S+ + + Sbjct: 261 ERIFLNYNNLTDKWESKRGNTTWGQLELDKAIKNQKTVYT-KSIDEFNVIQQGSKDIKQL 319 Query: 307 FSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDK---ITASIMNFLVSMK 363 + ++ + + W +++K +++ K I + F++ Sbjct: 320 LNQLGHEERTKM-----------EENWIEEEKRGRKPTTISPIKCAYILNEHLTFILFDD 368 Query: 364 EDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLD 423 E+ L+ D +++ + ++KA L ++ Sbjct: 369 EENTKLAMYQFDEGIYTQNTTIIKRVISYLEPKHNSNKADEVIYHLTNMVDIKEKTN--- 425 Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ-----EFLDLVSGY-F 477 S + ++G+ + +T Q T + T T + +F + Sbjct: 426 -SPYLIPVKNGVFNRKTKQLEAFTPDYVFTTKISTKYNPNVVRPNLNGWDFDHWLYEIAC 484 Query: 478 ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537 +E++ + ++ G ++ I G G +GK T LI G + V + + ++ Sbjct: 485 ADKEIVTLLWEVINDSMNGNYTRKKAIFFVGDGNNGKGTFQELISNLVGYKNVASLKVNE 544 Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI-NAAKIKQMTGGDCMTARLNYGNT 596 L L G +VI + I +++ K + GD + + Sbjct: 545 FD---------HEFKLSVLEGKAVVIGDDVPVGINIEDSSNFKSVVTGDSVLVNVKNKQP 595 Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAK 656 Y T N + RR +++PF+ + + + K + Sbjct: 596 YRT-EFRCTVIQSTNGMPKFTDKTGGTNRRLLIVPFNADFNDSNENVDIKEKYLKDNHVL 654 Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAK 716 ++ L KA + IP+V K E +Q D+ + + D + Sbjct: 655 EYVL--YKAINLEFDRFTIPQVSKKMLEIYKQDNDSVYDFKIEEFDQWNIQKVPKKVVYY 712 Query: 717 SYSEYREQELNYDRKRISTRTVTLNLKQ 744 Y + E+ + +S RT ++ Sbjct: 713 RYRAFCEENRYMGK--MSDRTFYRRFEK 738 >gi|227542784|ref|ZP_03972833.1| phage/plasmid primase P4 family protein [Corynebacterium glucuronolyticum ATCC 51866] gi|227181410|gb|EEI62382.1| phage/plasmid primase P4 family protein [Corynebacterium glucuronolyticum ATCC 51866] Length = 510 Score = 214 bits (545), Expect = 5e-53, Method: Composition-based stats. Identities = 62/522 (11%), Positives = 155/522 (29%), Gaps = 46/522 (8%) Query: 283 KRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVY 342 K T + A ++D N A+F+ K T+ + N Sbjct: 6 KHETKDITVAEKEEKGIITD-AEPWTDPTNPAVFADELKARLFTLGKTE---EHPGLNTL 61 Query: 343 IWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKA 402 + + + + +++ P K+ +N+ Sbjct: 62 VLIGDVWHRWDGVKFARIKNDDELRQKYLYPRLKWARYKTVSTGKEKVPITKNLNPKKAM 121 Query: 403 KSTAQSLEAGSIFSITS-------------DLLDSSSRFLGEQDGILDLETGQKVKPTKE 449 + G +F+I + + ++ + ++G+LD + T Sbjct: 122 LNDIIDPLRGIVFTIEGKDTHHMWIQDTNRNDIPTNGALIPMENGLLDANARRLYPHTPN 181 Query: 450 LYITKSTGTPFVEGEPSQEFLDLVSGYFE-----------SEEVMDYFTRCVGMALLGGN 498 L T + + + + + + + G + G Sbjct: 182 LIATWALPFSYDPKTTCPNWHAFLDDVLQVDAHNTGQLETDPLAKMFLQQWAGYLISGET 241 Query: 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMG 558 +A + + + G +GK + + + G + +++ + L + G Sbjct: 242 RAHKAVIVTGAPRAGKGVMATVFQELMGKENSEVTTFTNL---------GSRFGLANIDG 292 Query: 559 SRIVIISETNEN--DEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV 616 + +S++ + + + ++ + D M G + + I N + Sbjct: 293 KKFTFMSDSRDGSLNRLATERLLSLIANDPMAVEPK-GKDITTRRLNTRLMIFSNNVPRM 351 Query: 617 RNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-I 675 + +A R+I + K + W L+G+ + + Sbjct: 352 PDSGNAIGTRFICLDLPKSHVGNEDQGLTDRLLGELPGILNWALEGLATLKANEWVFTSL 411 Query: 676 PEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIST 735 P+ K + + Q ++++ ++ + L +Y+++ RI+ Sbjct: 412 PQSHKKVLLTVNEQANPLQVFVNERVNLVPGAKIALNELHDAYNQWCNDGG---YNRINK 468 Query: 736 RTVTLNLKQKGFIGGIKREKIEKEWKSKRI--IKGLKLKPAF 775 T LK G E+ E K++ +KG L P + Sbjct: 469 TTFKERLKALRLNGVKVAERTNMEGHLKKVDAVKGAMLIPNY 510 >gi|87161639|ref|YP_493509.1| putative DNA primase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|161509102|ref|YP_001574761.1| DNA primase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|294850177|ref|ZP_06790913.1| primase [Staphylococcus aureus A9754] gi|87127613|gb|ABD22127.1| putative DNA primase [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|160367911|gb|ABX28882.1| possible DNA primase [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|294822951|gb|EFG39384.1| primase [Staphylococcus aureus A9754] gi|315197253|gb|EFU27591.1| possible DNA primase [Staphylococcus aureus subsp. aureus CGS01] gi|320142978|gb|EFW34770.1| nucleoside triphosphatase, D5 family [Staphylococcus aureus subsp. aureus MRSA177] Length = 790 Score = 214 bits (544), Expect = 5e-53, Method: Composition-based stats. Identities = 96/778 (12%), Positives = 231/778 (29%), Gaps = 96/778 (12%) Query: 27 DKRPQRLGKWEEQLLSSEKIDKL-----------PACGFGFVCGVGEQPLYAFDIDSKDE 75 K P + + + + G GFV DID+ + Sbjct: 42 GKVPYSINGYRASTTNKKTWCDFESVSIEYEVDEQYSGIGFVL-SDGNNFVCLDIDNAID 100 Query: 76 KTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYF 135 K + + L F K + + + T +++ ++ Sbjct: 101 KKGQINSELALKMMQLTYCEKSPSGTGLHCFF--KGKLPDNRKKKRTDLDIELYDSARFM 158 Query: 136 VAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSK 195 + + D + V+ FK + ++ + Sbjct: 159 TVTGC------------TIGQSDICDNQEVLNTLVDEYFKENLPANEVVREESNTN---- 202 Query: 196 TWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIP-----VVMAVHH----ETRGSSKG 246 ++ N + + ++ G+++ + V +H+ + + Sbjct: 203 --IQLSDEDIINIMMKSKQKDKIKDLLQGTYESYFESSSEAVQSLLHYLAFYTGKNKQQM 260 Query: 247 KEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASR 306 + I ++ ++ + N W E+ K + T + +IP+G Sbjct: 261 ERIFLNYNNLTDKWESKRGNTTW---GQLELDKAIKNQKTIYTKSIDEFNVIPQGSKD-- 315 Query: 307 FSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDV 366 K + + + +I + +I + + Sbjct: 316 -----VKQLLNQLGHEE-----------RTKMEENWIEEGKRGRKPTTI-SPIKCAYILN 358 Query: 367 FDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQ----SLEAGSIFSITSDLL 422 L+ D+ +N+K + F+ QN + S + S +A + ++++ Sbjct: 359 EHLTFILFDDEENTKLAMYQFDEGIYTQNTTIIKRVISYLEPKHNSNKADEVIYHLTNMV 418 Query: 423 D-----SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF-----LDL 472 D +S + ++G+ + +T Q T + T T +V + E Sbjct: 419 DIKEKTNSPYLIPVKNGVFNRKTKQLESFTPDYIFTSKIDTSYVRQDIVPEINGWNIDRW 478 Query: 473 VSGY-FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVI 531 + +V+ + + ++ G ++ I G G +GK T L+ G + Sbjct: 479 IEEIACNDNQVVKLLWQVINDSMNGNYTRKKAIFFVGDGNNGKGTFQELLSNVIGYSNIA 538 Query: 532 NAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA-AKIKQMTGGDCMTAR 590 + + ++ + L L G VI + ++ + K + GD + Sbjct: 539 SLKVNEFDE---------RFKLSVLEGKTAVIGDDVPVGVYVDDSSNFKSVVTGDPVLVE 589 Query: 591 LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETK 650 + T N ++ RR +++PF+ +F K + Sbjct: 590 FKNK-PLYRATFKCTVIQSTNGMPKFKDKTGGTLRRLLIVPFNANFNGIKENFKIKEDYI 648 Query: 651 YTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEE 710 + ++ L + DIP+ K E ++ D + + D Sbjct: 649 KNQQVLEYVLYKAINLDFE--TFDIPDASKKMLEVFKEDNDPVYGFKVNMFDQWTIRKVP 706 Query: 711 SHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQ--KGFIGGIKREKIEKEWKSKRII 766 + + Y EY ++ +S+ + + + + + + E +KRI Sbjct: 707 KYIVYAFYKEYCDENG---YNALSSNKFYKQFEHYLENYWKTDAQRRYDNEELAKRIY 761 >gi|255693185|ref|ZP_05416860.1| phage/plasmid primase, P4 family domain protein [Bacteroides finegoldii DSM 17565] gi|260621078|gb|EEX43949.1| phage/plasmid primase, P4 family domain protein [Bacteroides finegoldii DSM 17565] Length = 559 Score = 214 bits (544), Expect = 6e-53, Method: Composition-based stats. Identities = 63/473 (13%), Positives = 149/473 (31%), Gaps = 32/473 (6%) Query: 292 YHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKI 351 K I + + F + Y ++ +K D K +++ ++ + + Sbjct: 5 KEILKEILDNIPKTDFKEIYAGGLYRRLEKET---DPDVKKLFQEKIYSIQVTDENKSVL 61 Query: 352 ---------TASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKA 402 +++ + + ++ + F + + ++ Sbjct: 62 VVEKVKEVTEQLGYGLVINEEGTCYLYNKVFWEPINELDLKHFLGKAFQKMGADKYTARN 121 Query: 403 KSTAQSLEAGSIFSI-TSDLLDSSSRFLGEQDGILDLETG---QKVKPTKELYITKSTGT 458 A + + +S+ D + + L + ++ + + + Y Sbjct: 122 VRIANRIHEQACYSLYKQTERDKGVVKINLTNTTLVIGHDGSVKEQEHSADDYFFYVLPY 181 Query: 459 PFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLM 518 + F + ++V + VG L K ++ + G G +GKS Sbjct: 182 EYAPKAMCPMFQKFLDEVLPEKDVQEVLQEFVGCCLNPFIKLEKVLCCIGTGANGKSVFF 241 Query: 519 NLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKI 578 I G V + + + ++ I + + S+ N Sbjct: 242 ETIMAVLGENNVSSYNINSLCDDKGYS-------RIMIKNKLLNYSSDFN-GKIWGNGIF 293 Query: 579 KQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN 638 KQ+ G+ + AR Y + N + + RR ++IPF I+ Sbjct: 294 KQLASGEPVEARQLYQDPEM-VKGYARLAFNCNSIPTSSDSSYGFRRRLLMIPFGMKISK 352 Query: 639 R--DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAW 696 D A+KL W ++G++ +I G + ++E ++ TD+ + Sbjct: 353 EKADPDLARKL-RSELPGILLWAIEGLQRFIRNGKKLSSSPTIEALEQEYKEDTDSVVMF 411 Query: 697 I-DDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFI 748 + G+ ++ L Y EY + + S + LK++G+ Sbjct: 412 LGSKHYIPGDKDFKRLSELYNEYKEYCKSN---SIRFESKSNLKNKLKEEGYT 461 >gi|21282480|ref|NP_645568.1| putative primase [Staphylococcus aureus subsp. aureus MW2] gi|300912574|ref|ZP_07130017.1| DNA primase domain protein [Staphylococcus aureus subsp. aureus TCH70] gi|21203917|dbj|BAB94616.1| putative primase [Staphylococcus aureus subsp. aureus MW2] gi|300886820|gb|EFK82022.1| DNA primase domain protein [Staphylococcus aureus subsp. aureus TCH70] Length = 790 Score = 213 bits (543), Expect = 7e-53, Method: Composition-based stats. Identities = 91/776 (11%), Positives = 230/776 (29%), Gaps = 76/776 (9%) Query: 15 HNGFKLIPLRLGDKR--PQRLGKWEEQLL-SSEKIDKLPACGFGFVCGVGEQPLYAFDID 71 + +P + R W + S E G GFV DID Sbjct: 38 QQNYGKVPYSINGYRASTTNKKTWCDFESVSIEYEVDEQYSGIGFVL-SDGNNFVCLDID 96 Query: 72 SKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGC 131 + ++ + + L F K + + + T +++ Sbjct: 97 NAIDEKGQINSELALKMMRLTYCEKSPSGTGLHCFF--KGKLPDNRKKKRTDLDIELYDS 154 Query: 132 GQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSI 191 ++ + + D + ++ FK + + ++ + Sbjct: 155 ARFMTVTGC------------TIGQNDICDNQEVLNTLIDEYFKENLPVNDVVREESNTN 202 Query: 192 IPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIP-----VVMAVHH----ETRG 242 ++ N + + ++ G+++ + V +H+ + Sbjct: 203 ------MQLSDEDIINIMMKSKQKDKIKDLLQGTYESYFDSSSEAVQSLLHYLAFYTGKN 256 Query: 243 SSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGL 302 + + I ++ ++ + N W + ++ K T S+ + Sbjct: 257 KQQMERIFLNYNNLTDKWESKRGNTTWGQLELDKAIKNQKTVYT-KSIDEFNVIQQGSKD 315 Query: 303 LASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDK---ITASIMNFL 359 + + ++ + + W + K +++ K I + F+ Sbjct: 316 VKQLLNQLGHEERTKM-----------EEKWIEGGKRGRKPTTISPIKCAYILNEHLTFI 364 Query: 360 VSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITS 419 + E+ L+ D +++ + ++KA L + Sbjct: 365 LFDDEENTKLAMYQFDEGIYTQNTTIIKRVISYLEPKHNSNKADEVIYHLTNMVDIKEKT 424 Query: 420 DLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF-----LDLVS 474 + S + ++G+ + +T Q T + T T +V + E + Sbjct: 425 N----SPYLIPVKNGVFNRKTKQLESFTPDCIFTTKIDTSYVRQDIVPEINGWNIDRWIE 480 Query: 475 GY-FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533 +V+ + + ++ G ++ I + G G +GK T L+ G + + Sbjct: 481 EIACNDNQVVKLLWQVINDSMNGNYTRKKAIFLVGNGNNGKGTFQELLSNVIGYSNIASL 540 Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAA-KIKQMTGGDCMTARLN 592 + ++ + L L G VI + ++ + K + GD + Sbjct: 541 KVNEFDE---------RFKLSVLEGKTAVIGDDVPVGVYVDDSSNFKSVVTGDPVLVEFK 591 Query: 593 YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYT 652 + T N ++ RR +++PF+ +F K + Sbjct: 592 NK-PLYRATFKCTVIQSTNGMPKFKDKTGGTLRRLLIVPFNANFNGIKENFKIKEDYIKN 650 Query: 653 LEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESH 712 + ++ L + DIP+ K E ++ D + + D + Sbjct: 651 PQVLEYVLYKAINLDFE--TFDIPDASEKMLEVFKEDNDPVYGFKVNMFDQWTIRKVPKY 708 Query: 713 SLAKSYSEYREQELNYDRKRISTRTVTLNLKQ--KGFIGGIKREKIEKEWKSKRII 766 + Y EY ++ +S+ + + + + + + E +KRI Sbjct: 709 IVYAFYKEYCDENG---YNALSSNKFYKQFEHYLENYWKTDAQRRYDNEELAKRIY 761 >gi|307828927|gb|ADN95149.1| primase-like protein [Staphylococcus aureus] Length = 790 Score = 213 bits (542), Expect = 9e-53, Method: Composition-based stats. Identities = 96/782 (12%), Positives = 237/782 (30%), Gaps = 88/782 (11%) Query: 15 HNGFKLIPLRLGDKR--PQRLGKWEEQLL-SSEKIDKLPACGFGFVCGVGEQPLYAFDID 71 + +P + R W + S E G GFV + DID Sbjct: 38 QQNYGKVPYSINGYRASTTNKKTWCDFESVSIEYEVDEQYSGIGFVL-SDDNNFVCLDID 96 Query: 72 SKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGC 131 + ++ + + L F K + + + T +++ Sbjct: 97 NAIDEKGQINSELALKMMQLTYCEKSPSGTGLHCFF--KGKLPDNRKKKRTDLDIELYDS 154 Query: 132 GQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSI 191 ++ + + D + ++ FK + + ++ + Sbjct: 155 ARFMTVTGC------------TIGQNDICDNQEVLNTLIDEYFKENLPVNDVVREESNTN 202 Query: 192 IPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIP-----VVMAVHH----ETRG 242 ++ N + + ++ G+++ + V +H+ + Sbjct: 203 ------MQLSDEDIINIMMKSKQKDKIKDLLQGTYESYFESSSEAVQSLLHYLAFYTGKN 256 Query: 243 SSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGL 302 + + I ++ ++ + N W E+ K + T + + IP+G Sbjct: 257 KQQMERIFLNYNNLTDKWESKRGNTTW---GQLELDKAIKNQKTVYTKSINEFDAIPQGS 313 Query: 303 LASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSM 362 K + + + +I + +I + + Sbjct: 314 KD-------VKQLLNQLGHEE-----------RTKMEEKWIEGGKRGRKPTTI-SPIKCA 354 Query: 363 KEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQ----SLEAGSIFSIT 418 L+ D+ +N+K + F+ QN + S + S +A + Sbjct: 355 YILNEHLTFILFDDEENTKLAMYQFDEGIYTQNTTIIKRVISYLEPKHNSNKADEVIYHL 414 Query: 419 SDLLD-----SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF---- 469 ++++D +S + ++G+ + +T Q T + T T +V + E Sbjct: 415 TNMVDIKEKTNSPYLIPVKNGVFNRKTKQLESFTPDYIFTSKIDTSYVRQDIVPEINGWN 474 Query: 470 -LDLVSGY-FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 + +V+ + + ++ G ++ + + G G +GK T L+ G Sbjct: 475 IDRWIEEIACNDNQVVKLLWQVINDSMNGNYTRKKALFLVGNGNNGKGTFQELLSNVIGY 534 Query: 528 QYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA-AKIKQMTGGDC 586 + + + ++ + L L G VI + ++ + K + GD Sbjct: 535 SNIASLKVNEFDE---------RFKLSVLEGKTAVIGGDVPVGVYVDDSSNFKSVVTGDP 585 Query: 587 MTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQK 646 + + T N ++ RR +++PF+ +F K Sbjct: 586 VLVEFKNK-PLYRATFKCTVIQSTNGMPKFKDKTGGTLRRLLIVPFNANFNGIKENFKIK 644 Query: 647 LETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGEN 706 + + ++ L + DIP+ K E ++ D + + D Sbjct: 645 EDYIKNQQVLEYVLYKAINLDFE--TFDIPDASKKMLEVFKEDNDPVYGFKVNMFDQWTI 702 Query: 707 LWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQ--KGFIGGIKREKIEKEWKSKR 764 + + Y EY ++ +S+ + + + + + + E +KR Sbjct: 703 RKVPKYIVYAFYKEYCDENG---YNALSSNKFYKQFEHYLENYWKTDAQRRYDNEELAKR 759 Query: 765 II 766 I Sbjct: 760 IY 761 >gi|150024492|ref|YP_001295318.1| hypothetical protein FP0387 [Flavobacterium psychrophilum JIP02/86] gi|149771033|emb|CAL42500.1| Protein of unknown function [Flavobacterium psychrophilum JIP02/86] Length = 463 Score = 212 bits (540), Expect = 1e-52, Method: Composition-based stats. Identities = 63/415 (15%), Positives = 141/415 (33%), Gaps = 23/415 (5%) Query: 346 LTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKST 405 L K T L + ++ + E ++ N F + ++K + Sbjct: 47 EILLKKTNEQKFSLCRKNDMIYLFNTECWEHINNDLFKDFLGQVALKIGVDRFDAKLHNF 106 Query: 406 AQSLEAGSIFSITSDLLDS--SSRFLGEQDGILDLE--TGQKVKPTKELYITKSTGTPFV 461 L I + S + + +G ++ T + K ++T F Sbjct: 107 KDELLKQFISDARLKEIKSEIQTTLINLINGTFEINGTTQNIREFRKSDFLTYQLPFEFD 166 Query: 462 EGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALL--GGNKAQRFIHIRGVGGSGKSTLMN 519 +F++ ++ +E+ + + +G + G K ++ + + G G +GKS L Sbjct: 167 PNAKCPKFMNFLNEVLPEKELQNVLSEYLGYIFIKNGVLKLEKVLLLYGTGANGKSVLFE 226 Query: 520 LIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIK 579 +I G + N + + + SE N ++ + K Sbjct: 227 IICALIGKHNITNYSLQSLTDKDGYR-------RAMIANKLLNYASEI--NGKLEISFFK 277 Query: 580 QMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA-- 637 Q+ G+ + ARL YGN N+ +A++RR+I++PF I Sbjct: 278 QLASGEPVEARLPYGNPLL-ITDYAKLIFNCNELPRDTEQTNAFFRRFIILPFRNTIPPE 336 Query: 638 NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWI 697 ++ A+++ W ++G+K + + ++ + + +D+ ++ Sbjct: 337 KQNKKLAEQIINDELSGIFNWVIEGLKRLLENE-NFTESQIIKNEVVQYQIESDSVLMFL 395 Query: 698 DD-CCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGI 751 +D + N + Y Y + S +T + + KG Sbjct: 396 EDLEYEKSLNETVTVSFVYDEYKTYCRENG---YVFCSVKTFSQRIVNKGIERKR 447 >gi|118445168|ref|YP_879280.1| primase [Clostridium novyi NT] gi|118135624|gb|ABK62668.1| putative primase [Clostridium novyi NT] Length = 724 Score = 212 bits (540), Expect = 2e-52, Method: Composition-based stats. Identities = 109/807 (13%), Positives = 220/807 (27%), Gaps = 148/807 (18%) Query: 18 FKLIPLRLGDKRPQRLGKWEEQLLSSEKI------------DKLPACGFGFVCGVGEQPL 65 + IP+ W + + + + G+ +CG + Sbjct: 20 YSKIPIIPWK----DENNWVNNIDAVQSLGSIYKKEINGETKGGQLTGYSLLCGKTSN-I 74 Query: 66 YAFDIDSKDEKTA----NTFKDTFEILHGTPIVRIGQKP------KILIPFRMNKEGIKK 115 DID ++ FK+ + RI + + KEG+K Sbjct: 75 IVIDIDVNHGDSSIDGIQNFKEFIKEFSNEDKKRILNTFVVITPRGGMHLYFKYKEGLKN 134 Query: 116 KKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFK 175 K + +D+ G V K + + + + LF Sbjct: 135 KA---NYIPGVDVRTDGGLIVLPGSQVKVDG--------EILEYKANGKDIQYMPQVLFD 183 Query: 176 FFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMA 235 ++ P K + S K + + + E + + W+ Sbjct: 184 KLLKLDKPSQKKETSKKIQKDFKADKY----------YKPVKEGEGRDNTLISWL--GYM 231 Query: 236 VHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHG 295 + + +K + Q Y+ F +F+ E + + S G Sbjct: 232 IKNNPNMRTKEALL-----PQAVMYNRCWFEPPL-SFEIVEKKIESVIKYALPSYCDEKG 285 Query: 296 KLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADT-KAWYKKDKNNVYIWSLTLDKITAS 354 + L+ + Y KG+ + DT K +YK Sbjct: 286 HINNWALVQYIIKEQ------PSYTKGNLWFIYDTEKGFYKY------------------ 321 Query: 355 IMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSI 414 E ++ N + +N S +A I Sbjct: 322 ------------------MELREVQKMYFKYALNDKDKTVTRSKNFAELLMLNSSDARDI 363 Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ----EFL 470 ++ +GI+D+E+ + + + ++ + EF Sbjct: 364 HDEKK--------YINCLNGIIDIESDELLPHDPKYKTEIQFQANYISEWKDKFNNSEFK 415 Query: 471 DLVSGYFESEEVMDYFTRCVGMALLGGNKA-QRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529 + E + G+ L ++ Q +G G +GKS ++ + + Sbjct: 416 KFLDTTL-DEGSITTLQESWGLMLSPHSREVQNCFIYKGEGSNGKSATFDIQEALIKDNK 474 Query: 530 VINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTA 589 I + + G + I+ + + + K M G+ + Sbjct: 475 YI--------CSIGLGDFGEPFVISMAEGKHVNIVRDDELSGKTVNKFFKSMVCGEPILV 526 Query: 590 RLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN----------- 638 + + T F N+ + ++RR I+IPF+ Sbjct: 527 NRKNKDL-VRLGFNMTMFFGLNRLPSAADKSTGFFRRPIIIPFNVSFGTEKEVKEGTRDK 585 Query: 639 -RDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWI 697 +D A ++ W +G+K S V + E + EE RQ D+ A+ Sbjct: 586 LKDTQLADRIIQNELDLVFMWAYEGLKRVKSNKWKVTVSESSEQEMEEYRQEVDSSYAFF 645 Query: 698 DDCCDIGE--NLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755 + I ++ Y ++ + D ++ K G Sbjct: 646 KEKLKIEPKSGEKILKDNVYNRYLQWCSE---SDITPMNKVQFGRQFKSFG--------V 694 Query: 756 IEKEWKSKRIIKGLKLKPAFESVDDNS 782 EK S+R + E V D Sbjct: 695 KEKVSNSRRYWIDICF-IDLEEVQDGK 720 >gi|298674413|ref|YP_003726163.1| phage/plasmid primase [Methanohalobium evestigatum Z-7303] gi|298287401|gb|ADI73367.1| phage/plasmid primase, P4 family [Methanohalobium evestigatum Z-7303] Length = 545 Score = 212 bits (540), Expect = 2e-52, Method: Composition-based stats. Identities = 69/472 (14%), Positives = 156/472 (33%), Gaps = 32/472 (6%) Query: 307 FSDAYNKAMFS--IYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKE 364 F D + + D K ++ ++I F + + Sbjct: 98 FDDIIKNKIIDEVLENTEPTRAKKDDPYNKYFSKKGKFVVKYLAEEILRENHFFTLKDTK 157 Query: 365 DVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDS 424 +V+ N + + + S K ++ ++ + + +++ Sbjct: 158 EVYYYQNGVYLPNGIDEISK---QVQDKLDEHYRKSYKKEVIDYIKTKAL--VDRESINN 212 Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMD 484 + + ++G+ D+ G+ + + + T + +S +S++ Sbjct: 213 NKYIINLKNGLYDVSKGKFLPHSPKYMSTIQLPVYYKPEAECPNIEKFLSDVTKSDKDKQ 272 Query: 485 YFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544 +G L+ + Q+F+ G GKS L+ LI GN V ++ + Sbjct: 273 LIFEWIGYTLIPNTRLQKFVMFYGPRDGGKSVLIKLITCLLGNYNVSGESLQNLEND--- 329 Query: 545 EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGD-CMTARLNYGNTYSESPAS 603 + S+ L G + + + + IK MTG D + + Y + Sbjct: 330 -----DFSIANLEGKLLNAFPDLPDYGFYQNSVIKIMTGDDGYIRVNIKKVQPYKT-TIT 383 Query: 604 FTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDASFAQKLET-KYTLEAKKWFL 660 N ++NPD+A+++R ++I F +D + KL T + + Sbjct: 384 ARLMFSTNNLPVIKNPDEAFFKRLMLIEFPNTFQGDSKDVNLIDKLTTSEELSGLLNKAI 443 Query: 661 KGVKAYISKG-LDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYS 719 ++ + G D+ L+ E ++ ++ + D+ C N + + +Y Sbjct: 444 AALERLLKNGEFSYDLNP--LENMELYQKLSNPVAKFADE-CVGESNEYTFKVDMYNAYV 500 Query: 720 EYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771 E+ E+E D + K G+ R+ G+ L Sbjct: 501 EWCEKE---DIVPLKKNEFGKQFKNLGY-----RDSRLNTGDRSYCWDGVSL 544 >gi|126660109|ref|ZP_01731229.1| hypothetical protein CY0110_30895 [Cyanothece sp. CCY0110] gi|126618629|gb|EAZ89378.1| hypothetical protein CY0110_30895 [Cyanothece sp. CCY0110] Length = 1031 Score = 212 bits (539), Expect = 2e-52, Method: Composition-based stats. Identities = 83/505 (16%), Positives = 165/505 (32%), Gaps = 41/505 (8%) Query: 306 RFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWS----LTLDKITASIMNFLVS 361 ++++ + K +Y TK WY + IW L++ ++ LV Sbjct: 319 KWNEKRVCEYLASLYKDRLIYEGTTKDWYLYNAEKEGIWDLITKERLEQRLMLELDGLVD 378 Query: 362 MKEDVF-----DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFS 416 E + +S N S+ + + + A + Sbjct: 379 KAETISQQIQTAISAVKGSNRDRSQKSELIEQLKAQIPKISDYKFTFVEAIGKRLSRVLL 438 Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY 476 + +S + ++G+LDLET + + Y+T + + Sbjct: 439 VNEMSTNSQKGLIPFRNGVLDLETRELWPHSPTNYLTWCLPYDYNPLASCNPIKQWLLEM 498 Query: 477 F-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535 E +++ + + G Q+F+ + G GGSGKSTL L G + V + Sbjct: 499 MEGDETLVNLIRAYLHGIVTGRADWQKFLALCGPGGSGKSTLTKLAIALVGAENVHVTDL 558 Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595 + +++ + R+VII+E + K+K +TGGD + Y Sbjct: 559 DILEKDK--------FETANIKDKRLVIINEATSYRGVK--KLKALTGGDRLRFEQKYKQ 608 Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLET------ 649 + I N+ + + +RR I + ++ IA RD + Sbjct: 609 ALASFYPDALVIITSNEPIKTGDHTSGLYRREIPLSMNRRIAERDQRKLIDHDRDNNLTG 668 Query: 650 ---KYTLEAKKWFLKGVKAYISKGLDVDIPEVC--LKAKEEERQGTDTYQAWIDDCCDIG 704 Y W L+ + + + LK+K E T++ AW+++ Sbjct: 669 EFAPYIPGLLNWVLEMDSNDATTIIKDPLNYAVGLLKSKLENLIDTNSIAAWLNEKITYI 728 Query: 705 ENLWEE---SHSLAKS------YSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755 + + L +S Y+ Y + IS + L + Sbjct: 729 DRYETQIGCKSPLGESKENIWLYANYCQYCSLSGINTISLTRFSYLLLDLC-NNQLGFTV 787 Query: 756 IEKEWKSKRIIKGLKLKPAFESVDD 780 + + I+GLK++ + Sbjct: 788 RKGRDRKGAFIQGLKIRDHLDEDLP 812 >gi|255325885|ref|ZP_05366977.1| phage/plasmid primase, P4 family domain [Corynebacterium tuberculostearicum SK141] gi|255297097|gb|EET76422.1| phage/plasmid primase, P4 family domain [Corynebacterium tuberculostearicum SK141] Length = 475 Score = 212 bits (538), Expect = 3e-52, Method: Composition-based stats. Identities = 68/458 (14%), Positives = 154/458 (33%), Gaps = 34/458 (7%) Query: 325 LYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPR 384 +++ + + ++++ T + + + +K ++ E K Sbjct: 25 VFSTEGNRNTAYWRGQWWLFNGTHWEQEENELE----VKRPIWTRLGEV--MLSKPKGAE 78 Query: 385 FWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKV 444 W T N+ E + + + F I + + + Q+G+L+ TG+ + Sbjct: 79 PWSPTTASVSNLME-PLKIALMLKDKKDAPFWIEQGHIMNPHDLIVLQNGVLNFRTGKFM 137 Query: 445 KPTK-ELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQR 502 + EL+ T S + F + F G A+ G Q+ Sbjct: 138 QGNHMELFNTWSLPFSYDATATCPTFEKFLDDTFAHDPAGRAAIQEFAGYAISGRTDLQK 197 Query: 503 FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIV 562 + + G G GK TL I+ G + V++ + + + L L+G + Sbjct: 198 ALVLVGPPGGGKGTLSRTIQQLVGVENVVSPSLTKL---------GSEFGLSDLIGKPLA 248 Query: 563 IISETNENDEINAA----KIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRN 618 +I + + + ++ + G D ++ + ++ + + +V N+ + Sbjct: 249 VIEDARSDYSHTSGTTVERLLSIIGEDAVSINRKNQSYWNGTLPT-RIMLVSNEVPRFPD 307 Query: 619 PDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIP 676 A RR++ + K + RD KL W L G+K + P Sbjct: 308 ASGAMIRRFVAVKLSKSVPEEERDEKLGAKL-KAELPGIFNWALDGLKRLEQQ-HHFTEP 365 Query: 677 EVCLKAKEEERQGTDTYQAWIDD----CCDIGENLWEESHSLAKSYSEYREQELNYDRKR 732 E + ++D+ + + E ++ +Y + E+ R Sbjct: 366 ETMADIQSMMSDLNSPVANFLDEEPTYRVTGNPSDYVELKAVHAAYKSWCEEVG---RSN 422 Query: 733 ISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLK 770 ++ + + L +K K + K R + G+K Sbjct: 423 MNQQNLAQQLDSVSPDIEVKNTKPDAYTKKGRYVFGIK 460 >gi|293569187|ref|ZP_06680491.1| phage/plasmid primase, P4 family protein [Enterococcus faecium E1071] gi|291588099|gb|EFF19943.1| phage/plasmid primase, P4 family protein [Enterococcus faecium E1071] Length = 468 Score = 210 bits (534), Expect = 8e-52, Method: Composition-based stats. Identities = 71/518 (13%), Positives = 162/518 (31%), Gaps = 62/518 (11%) Query: 270 DTFDFEEIGDTAKKRSTFTSL------FYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGH 323 D +I + S+ F+ + IPK L F++ + Sbjct: 4 KEMDNTQIFKNYLNPTKLRSVEEVKKAFFMLIEAIPKNLTEEAFNEQVADLIIEYTHMVM 63 Query: 324 FLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSP 383 T Y + ++ + I +L + +V +E + + Sbjct: 64 LK---STNGVYIYN------YTTHRWESKGEI--WLQRLVYEVTKSVDETNLWYRERNTC 112 Query: 384 RFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQK 443 + + +L +G D TG+ Sbjct: 113 EHIKRKLCMLETFSD----------------------------DYLVLTNGTFDRRTGEI 144 Query: 444 VKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQR 502 ++ Y + + + FL ++ F + + + G LL ++A Sbjct: 145 IESQSNHYAYFFSTVVYDSEKKCARFLQFLNEVFYSDQSTIAFVQEWFGYVLLSSHQANA 204 Query: 503 FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIV 562 F+ G G +GKS L L+ G ++ A ++ + + + Sbjct: 205 FLIGYGSGANGKSLLFALLAKLVGECNTSSS---------GISAFQSRFGMEVMHNKLLN 255 Query: 563 IISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDA 622 + +E++ N A +K +T G+ +T + + + N + + Sbjct: 256 LATESDVNS-FETATLKAVTAGEPITLNRKGIKEITCILPT-KFIFLMNHLPLITDSSYG 313 Query: 623 WWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCL 680 + RR +++PF + +D +K+ + L+G K I G I ++ Sbjct: 314 FSRRLLILPFPRTFRPEEQDPFLLEKMTL-ELSGILNFALEGAKRLIKNGYQFTISDLMN 372 Query: 681 KAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTL 740 +AKE+ + ES+ L +++ + +++ R+ + R+ Sbjct: 373 EAKEQFLGCVHPLSYFKAHYLSKNPTRKVESNLLFQTFQKMLKEKNWSARQYGTLRSFNK 432 Query: 741 NLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESV 778 L + K+ K + G+ L + + + Sbjct: 433 GLIEL--FEAEGFVISTKKSNGKTYLSGIVLNQSIQEL 468 >gi|298695297|gb|ADI98519.1| Putative DNA primase [Staphylococcus aureus subsp. aureus ED133] Length = 790 Score = 209 bits (532), Expect = 1e-51, Method: Composition-based stats. Identities = 90/776 (11%), Positives = 230/776 (29%), Gaps = 76/776 (9%) Query: 15 HNGFKLIPLRLGDKR--PQRLGKWEEQLL-SSEKIDKLPACGFGFVCGVGEQPLYAFDID 71 + +P + R W + S E G GFV DID Sbjct: 38 QQNYGKVPYSINGYRASTTNKKTWCDFESVSIEYEVDEQYSGIGFVL-SDGNNFVCLDID 96 Query: 72 SKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGC 131 + +K + + L F K + + + T +++ Sbjct: 97 NAIDKKGQINSELALKMMQLTYCEKSPSGTGLHCFF--KGKLPDNRKKKRTDLDIELYDS 154 Query: 132 GQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSI 191 ++ + + D + ++ FK + + ++ + Sbjct: 155 ARFMTVTGC------------TIGQSDICDNQEVLNTLIDEYFKENLPVNDVVREESNTN 202 Query: 192 IPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIP-----VVMAVHH----ETRG 242 ++ N + + ++ G+++ + V +H+ + Sbjct: 203 ------MQLSDEDIINIMMKSKQKDKIKDLLQGTYESYFKSSSEAVQSLLHYLAFYTGKN 256 Query: 243 SSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGL 302 + + I ++ ++ + N W + ++ K T S+ + Sbjct: 257 KQQMERIFLNYNNLTDKWESKRGNTTWGQLELDKAIKNQKTVCT-KSIDEFNVIQQGSKD 315 Query: 303 LASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDK---ITASIMNFL 359 + + ++ + + W ++ K +++ K I + F+ Sbjct: 316 IKQLLNQLGHEERTKM-----------EENWIEEGKRGRKPTTISPIKCAYILNEHLTFI 364 Query: 360 VSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITS 419 + E+ L+ D +++ + ++KA L + Sbjct: 365 LFDDEENTKLAMYQFDEGIYTQNTTIIKRVISYLEPKHNSNKADEVIYHLTNMVDIKEKT 424 Query: 420 DLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF-----LDLVS 474 + S + ++ + + +T Q T + T T +V + E + Sbjct: 425 N----SPYLIPVKNDVFNRKTKQLESFTPDYIFTSKIDTSYVRQDIVPEINGWNIDRWIE 480 Query: 475 GY-FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533 +V+ + + ++ G ++ + + G G +GK T L+ G + + Sbjct: 481 EIACNDNQVVKLLWQVINDSMNGNYTRKKALFLVGNGNNGKGTFQELLSNVIGYSNIASL 540 Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA-AKIKQMTGGDCMTARLN 592 + ++ + L L G VI + ++ + K + GD + Sbjct: 541 KVNEFDE---------RFKLSVLEGKTAVIGDDVPVGVYVDDSSNFKSVVTGDPVLVEFK 591 Query: 593 YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYT 652 + T N ++ RR +++PF+ +F K + Sbjct: 592 NK-PLYRATFKCTVIQSTNGMPKFKDKTGGTLRRLLIVPFNANFNGIKENFKIKEDYIKN 650 Query: 653 LEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESH 712 + ++ L + DIP+ K E ++ D + + D + Sbjct: 651 QQVLEYVLYKAINLDFE--TFDIPDASKKMLEVFKEDNDPVYGFKVNMFDQWTIRKVPKY 708 Query: 713 SLAKSYSEYREQELNYDRKRISTRTVTLNLKQ--KGFIGGIKREKIEKEWKSKRII 766 + Y EY ++ +S+ + + + + + + E +KRI Sbjct: 709 IVYAFYKEYCDENG---YNALSSNKFYKQFEHYLENYWKTDAQRRYDNEELAKRIY 761 >gi|67921707|ref|ZP_00515224.1| Phage/plasmid primase P4, C-terminal [Crocosphaera watsonii WH 8501] gi|67856299|gb|EAM51541.1| Phage/plasmid primase P4, C-terminal [Crocosphaera watsonii WH 8501] Length = 1013 Score = 209 bits (532), Expect = 1e-51, Method: Composition-based stats. Identities = 84/569 (14%), Positives = 182/569 (31%), Gaps = 58/569 (10%) Query: 243 SSKGKEIARRWSKQGSTYDEENFN--YKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPK 300 S+ K + W + D+ +W TF + + G K+ P Sbjct: 259 SAYCKVLFLSWDTEEKGIDDAIVANGSEWFTFVWAKRGIKP-----------APIKIAPL 307 Query: 301 GLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWS----LTLDKITASIM 356 ++++ + K +Y TK WY + IW L++ + Sbjct: 308 EHNLPKWNEKRVCEYLADLYKDRLIYEEVTKDWYLYNAEKDGIWEQISKERLEQRLMLEL 367 Query: 357 NFLVSMKEDV-----FDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEA 411 + L+ + + ++ N ++ + V + A Sbjct: 368 DALIDKAQTITNQIIKAINAVKTSNRDKTEKGDIIEQLKQQLPKVSDYKFTFVEALGKRL 427 Query: 412 GSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLD 471 + + +S + ++G+LDL+T + + + + Y T S + Sbjct: 428 SRVLLVKEMATNSQQGLIPFRNGVLDLDTRELLPHSPQNYFTWSLPYDYNPLAQCNPIKQ 487 Query: 472 LVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530 + E +++ + + G Q+F+ + G GGSGKSTL+ L G + V Sbjct: 488 WLLEMMEGDESLVNLIRAYLHGIVTGRTDWQKFLALCGPGGSGKSTLIKLAIALVGFENV 547 Query: 531 INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR 590 + + +++ L R+VII+E + K+K +TGGD + Sbjct: 548 HVTDLDILEKDK--------FETSNLKDKRLVIINEATSYKGVK--KLKALTGGDRLRFE 597 Query: 591 LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLET- 649 Y + I N+ + + +RR I + ++ I +++ + Sbjct: 598 QKYKQALASFYPDALVIITSNEPIKTGDYTSGLYRREIPLSMNRRIPDKEQKKLIDHDRQ 657 Query: 650 --------KYTLEAKKWFLKGVKAYISKGLDVDI---PEVCLKAKEEERQGTDTYQAWID 698 + W L+ ++ + P + + T++ AW++ Sbjct: 658 NNIIGEFAPHIPGLLNWVLEMDSEMATQIIKDPYNYAPALLKSKLDNLM-DTNSIAAWLN 716 Query: 699 DCCDIGENLW----------EESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFI 748 + E + Y+ Y + IS + + Sbjct: 717 EKIIYEPKYQTQVGCKSPLGESKEEIW-LYASYCAYCASAGINTISLTRFSYLVLDLC-N 774 Query: 749 GGIKREKIEKEWKSKRIIKGLKLKPAFES 777 + I+ K I+GLK++ + Sbjct: 775 NQLGLPIIKDRNNVKTYIEGLKIRDHLDE 803 >gi|320166048|gb|EFW42947.1| predicted protein [Capsaspora owczarzaki ATCC 30864] Length = 766 Score = 209 bits (531), Expect = 2e-51, Method: Composition-based stats. Identities = 91/558 (16%), Positives = 200/558 (35%), Gaps = 39/558 (6%) Query: 166 SEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGS 225 + + + E + + + ++ + E L Y Sbjct: 214 TPLQSDTIDALTAEAAEKRAQQRAARQIARGSERQLKHWF--EEAEEILMDHLGPEYYND 271 Query: 226 HDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRS 285 + +W V+ + +++ ++ +R+S Q + ++ K+D F + Sbjct: 272 YQKWFNVLAVIKTVFGDTAEAYDLCKRFSAQAGN---KEWDEKFDGFWERNLCA--DNGW 326 Query: 286 TFTSLFYH----HGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTA---DTKAWYKKDK 338 T +L+ + ++ + D + + ++ + + +Y D+ Sbjct: 327 TMKTLYKMVGGSSKLKCNEKVINNLGDDQRDAELLAMLLEDRLTSVSVQEKEAEFYLYDE 386 Query: 339 NNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEE 398 + L K + + + + + K + + + Sbjct: 387 ------AEALWKKK--VSTQMNVLVSQTMQKYLQGWIDEYKCKISEASQLAEEKIDQ-KT 437 Query: 399 NSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDG-ILDLETGQKVKPTKELYITKSTG 457 KA + L+ + LDS+ L D ++DL G+ KE Y + + Sbjct: 438 RKKAAAITHKLQTLLYDAQFKVKLDSAENLLPIADRKVVDLTNGEVRDRMKEDYFSLALS 497 Query: 458 TPFVEGEPSQEFLDLVSGYFES-EEVMDYFTRCVGMALLGGNKAQRFIHIRGV-GGSGKS 515 + G+ + S + ++ +G +L G NK+ + G G +GKS Sbjct: 498 VSYEPGKGTAVADKFFSEIMLDRADRIEQLRLSLGYSLFGHNKSNLMFFLYGPDGSNGKS 557 Query: 516 TLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA 575 L+N++ G + I + R ++ A+P ++L+G R+ +SE E +N Sbjct: 558 LLLNILTEIVGEFRATVDPSIIIGKTRLDQS--ASPYTMQLIGKRLGFMSELPEESVLNE 615 Query: 576 AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP 635 A +KQ+TG D MTAR NYGN + E + N +++ + WRR ++ FD Sbjct: 616 AMVKQLTGADVMTARQNYGNAF-EFSCYAKMLLATNYLPNMKD-SPSLWRRVRMVKFDAC 673 Query: 636 IANR--------DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEER 687 + ++ + + + W + G Y +KG +++P + R Sbjct: 674 FVENPTGSQKKINVNYMRDIAKPNINQFFTWMVNGAIEYSNKG-TIEVPADITAFIKGLR 732 Query: 688 QGTDTYQAWIDDCCDIGE 705 ++ + +ID C + Sbjct: 733 LKSNPVKLFIDKCVVFDK 750 >gi|144900032|emb|CAM76896.1| gp9a [Magnetospirillum gryphiswaldense MSR-1] Length = 896 Score = 208 bits (530), Expect = 2e-51, Method: Composition-based stats. Identities = 50/334 (14%), Positives = 121/334 (36%), Gaps = 21/334 (6%) Query: 423 DSSSRFLGEQDGILDLETG---QKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-- 477 D + + ++G L + + + + Y+T + F + F Sbjct: 548 DEPAPVINCRNGELWISGDGSTRLLPHRFDTYLTYVLDVDYDPAATCPRFDRALLDIFAR 607 Query: 478 --ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535 + ++ +F G A+ + +RG G +GK+ LM I+ + + + Sbjct: 608 STDPADMARHFMEFFGYAIQPRRDIACYFMLRGQGNNGKTKLMQTIERLINKRAIYS--- 664 Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595 +R ++ L G I++ + + + + +K+++ +T +L + + Sbjct: 665 -----DRMANIESDRFAIGSLAGKLILLDDDVDTDTLLPDGFLKKVSERKILTGQLKFKD 719 Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDASFAQKLETKYTL 653 + E A+ P ++ N + + RR +IPFD+ + +D + Sbjct: 720 AF-EFVATCLPVMLANNYPRCSDLSWGQRRRAKIIPFDRIFTDADKDDRLFPGIWANELP 778 Query: 654 EAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHS 713 ++G++ + P C KA + + +I++ C + + Sbjct: 779 GVLNRAIEGLQRL-RQRSGFAEPTDCRKAMNDWLAHANPLAGFIEETCRADLAASVPTSA 837 Query: 714 LAKSYSEYREQELNYDRKRISTRTVTLNLKQKGF 747 + E+ E+ R + T+ NL+ G+ Sbjct: 838 FYTRFREWAEEAG--IRNIPARNTIKRNLENLGY 869 >gi|255323765|ref|ZP_05364891.1| phage/plasmid primase, P4 family domain [Corynebacterium tuberculostearicum SK141] gi|255298945|gb|EET78236.1| phage/plasmid primase, P4 family domain [Corynebacterium tuberculostearicum SK141] Length = 512 Score = 208 bits (529), Expect = 3e-51, Method: Composition-based stats. Identities = 64/460 (13%), Positives = 156/460 (33%), Gaps = 32/460 (6%) Query: 336 KDKNNVYIWSLTLDK-ITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQ 394 + + +++S T + ++ S + + + + + + + K S + + R + Sbjct: 65 YWRGDWWMYSGTHWEAVSGSAKDADLVIAGQLLKVFDSAVYSKKESNTVTLVPWSPNRSK 124 Query: 395 NVEENSKAKSTA-----QSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKE 449 E K A + +A + L + ++ +G+L T + V T Sbjct: 125 ISEIIFALKPLAYAVVSDTDDAPCFLRDCAQLPGAPGEYVSMSNGLLRWSTRELVGHTPR 184 Query: 450 LYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRG 508 ++ T S + + + + F +D +G + G + + I G Sbjct: 185 VFTTYSLPFAYDPQATAPVWEKFLKQIFAHDTAAIDTLQEYLGYVISGRTDLHKALLIVG 244 Query: 509 VGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN 568 +GK T++ +++ G Q V + + + P L+G + II + Sbjct: 245 PTRAGKGTILRVLRQLVGQQNVTDTSLHSLGSDSGP---------AELIGKPLAIIGDAR 295 Query: 569 ENDEIN----AAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWW 624 + N + + G D ++ + Y + + + N + + A Sbjct: 296 DARAGNSNRATELLLNVIGEDGVSLQRKYLGDWVGRLPT-RFALASNVIPRLIDSSAAVV 354 Query: 625 RRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKE 684 R++++ ++ A ++ W L G++ +G P + K+ Sbjct: 355 GRFVMMRLEQSFAGQEDEELGAKLAAELPGILNWALDGLERLEQQG-RFTEPATMAEMKD 413 Query: 685 EERQGTDTYQAWIDDCCDI--GENLWEESHSLAKSYSEYREQEL------NYDRKRISTR 736 + + +I++ ++ + + + R++ Sbjct: 414 AMEGLSAPVRRFIEEYLEVTGNPADIVPRRDVYSHWRTWHADNGFTPCNQEEMCNRLTAT 473 Query: 737 TVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL-KPAF 775 + KQ + G K + +K +R I G+KL K AF Sbjct: 474 DGRIRAKQLD-VPGAKPKPGQKRPPRERYILGVKLVKSAF 512 >gi|229551169|ref|ZP_04439894.1| DNA primase [Lactobacillus rhamnosus LMS2-1] gi|229315461|gb|EEN81434.1| DNA primase [Lactobacillus rhamnosus LMS2-1] Length = 463 Score = 208 bits (528), Expect = 4e-51, Method: Composition-based stats. Identities = 67/358 (18%), Positives = 133/358 (37%), Gaps = 32/358 (8%) Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFL---DLVSGYFESE 480 + + +G +L T E YI + P+ S + L D ++ Sbjct: 123 ADPNLITFANGTYNLVTDTLQPHRPEDYILQ--NHPYDLKMKSGKDLKTVDWLAHLTGDP 180 Query: 481 EVMDYFTRCVGMALLGGNK-AQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539 ++ +G Q I ++G G +GK+T + +K + V N D+ Sbjct: 181 ISANFLMEFIGYCFYHRYSPFQALIILQGTGQNGKTTFIEFVKQILDKRNVSNVALQDLA 240 Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599 G +L + + ++ +++ +IK +TG D + A + +S Sbjct: 241 NKDNRFTGS------QLYQKEVNMFADLDDSFLKTTGQIKALTGDDTIFAEFKGKDGFS- 293 Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETK----YTLEA 655 NK + + RR V+PF K I D +F ++ + Sbjct: 294 FMNFAKLIFSANKLPKFSDFTSGFIRRLYVVPFPKKI---DNNFKKEFDLNQIYDEIPAF 350 Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCC--DIGENLWEESHS 713 L+ K I + + + AKE+ + +D +I+D C ++ N + S + Sbjct: 351 SYQCLRAFKRAIDRD-SLSKSPSMIAAKEQWLKDSDNIARFIEDRCRIELDTNGGDSSRN 409 Query: 714 LAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771 + K+Y +Y +E + K S T L+ +G + + ++ + RI + L L Sbjct: 410 IYKAYQDYCWEE---NIKPFSQPEFTRRLEAQGIP------RKKVQFNNTRIWRYLHL 458 >gi|126659382|ref|ZP_01730517.1| hypothetical protein CY0110_15055 [Cyanothece sp. CCY0110] gi|126619341|gb|EAZ90075.1| hypothetical protein CY0110_15055 [Cyanothece sp. CCY0110] Length = 1044 Score = 208 bits (528), Expect = 4e-51, Method: Composition-based stats. Identities = 66/521 (12%), Positives = 165/521 (31%), Gaps = 47/521 (9%) Query: 301 GLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWS-LTLDKITASIMNFL 359 + +++ K ++ + K WY + +W+ T ++ I+ L Sbjct: 306 EMNRLEWTEKGLTDYLVSMYKDRIIFNGEIKEWYLYEDETKGVWTPRTKMEVEQRILFDL 365 Query: 360 VSMKEDVFDLSEE-----PEDNNKNSKSPRFWFNTDYRRQNVEEN-SKAKSTAQSLEAGS 413 + +++ ++ E+ N + ++ + ++ + ++L Sbjct: 366 NDLTDEIDNVREQVLKAIKAVEESNREKKEKIEIMKQLKKQLPKSRTYTIRFVENLRRHI 425 Query: 414 IFSITSDLLDSS--SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLD 471 + + + ++ + ++G+LD+ + + + Y T S + + Sbjct: 426 STVLLTKKMQTNSIEGIIPFRNGVLDIARKELLPHSPTNYFTWSLPYDYNPLATGEPIKQ 485 Query: 472 LVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530 + E +++ + + G Q+F+ + G GG+GKSTL+ L G Sbjct: 486 WLLEMMQGDESLVELIRAYLHGVVTGRADWQKFLELIGPGGTGKSTLIRLAIALVGFSNC 545 Query: 531 INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR 590 + ++ + R+V++++ + +K +TG D + Sbjct: 546 HVTTLKRLETSK--------FETANIKDKRLVLVTDAERYTG-DVTTLKALTGEDSLPYE 596 Query: 591 LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLE-- 648 I N+H+ + RR I + + I+ + K + Sbjct: 597 KKMQQATGGFKPDCLVIIAGNEHIKTADYTSGLQRRRITVGMKRKISEENQKNLIKHDNQ 656 Query: 649 -------TKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKE--EERQGTDTYQAWIDD 699 Y W L+ S+ + E E + AW+++ Sbjct: 657 GNISGEFVPYIPGFLNWVLEMESESASECIKNAHKRCVKLTLERIESMVENNPIAAWLNE 716 Query: 700 CCDIGENLWE---------ESHSLAKS-----YSEYREQELNYDRKRISTRTVTLNLKQK 745 + + E+ + Y Y IS + L Sbjct: 717 NIIYDPDSYTHVGKAIASKENDEVYIGASKWLYPNYCAFCEGIKVNPISLNRFSTLLLDL 776 Query: 746 GFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDNSNIID 786 + + ++ I+GLK++ + +DD+ I+ Sbjct: 777 CNHQLNLGDVTKDRNRNGVFIQGLKIR---DHLDDDKPFIE 814 >gi|126659986|ref|ZP_01731109.1| hypothetical protein CY0110_01600 [Cyanothece sp. CCY0110] gi|126618751|gb|EAZ89497.1| hypothetical protein CY0110_01600 [Cyanothece sp. CCY0110] Length = 1031 Score = 207 bits (527), Expect = 4e-51, Method: Composition-based stats. Identities = 83/507 (16%), Positives = 165/507 (32%), Gaps = 45/507 (8%) Query: 306 RFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIW----SLTLDKITASIMNFLVS 361 ++++ K ++ +TK WY IW + L++ L Sbjct: 319 KWNEKGVVKYLVELYKDRLIFDKETKEWYLYSAEIEGIWKIISTEELEQRILLEFTHLDQ 378 Query: 362 MKEDVF-----DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFS 416 + ED+ + E + N + + Q +E QS+ Sbjct: 379 VVEDIRSQIGKAIKAVKESSRSNKEKTEIIGQL--KAQTPKEFDYTIRLVQSIGKHLSRK 436 Query: 417 ITSDLLDSS--SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVS 474 + + + S + ++G+LD+ET + + Y+T F + Sbjct: 437 LLTPQMQSHSQKGLIPFRNGVLDIETKELWPHSPTNYLTWCLPYDFNPLASCNPIKQWLL 496 Query: 475 GYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533 +++ + + G Q+F+ + G GGSGKSTL L G + V Sbjct: 497 EMMEGDATLVNLIRAYLHGIVTGRADWQKFLALCGPGGSGKSTLTKLAIALVGAENVHVT 556 Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593 + + +++ + R+VII+E + K+K +TGGD + Y Sbjct: 557 DLDILEKDK--------FETANIKDKRLVIINEATSYKGVK--KLKALTGGDRLRFEQKY 606 Query: 594 GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLET---- 649 + I N+ + + +RR I + ++ IA RD + Sbjct: 607 KQALASFYPDALVIITSNEPIKTGDHTSGLYRREIPLTMNRRIAERDQKKLIDHDRDNNL 666 Query: 650 -----KYTLEAKKWFLKGVKAYISKGLDVDIPEVC--LKAKEEERQGTDTYQAWIDDCCD 702 Y W L+ ++ + + LK+K E T++ AW+++ Sbjct: 667 TGEFAPYIPGLLNWVLEMDSEQATQIIKDPLNYAVGLLKSKLENLIDTNSIAAWLNEKIT 726 Query: 703 IGENLWE---------ESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKR 753 + ES Y+ Y + IS + L + Sbjct: 727 YIDGYETQIGCKSPLGESKEQIWLYANYCKYCSLSGINTISLTRFSYLLLDLC-NNQLGF 785 Query: 754 EKIEKEWKSKRIIKGLKLKPAFESVDD 780 + + I+GLK++ + Sbjct: 786 TIKKGRDRKGAFIQGLKIRDHLDEDLP 812 >gi|284037975|ref|YP_003387905.1| P4 family phage/plasmid primase [Spirosoma linguale DSM 74] gi|283817268|gb|ADB39106.1| phage/plasmid primase, P4 family [Spirosoma linguale DSM 74] Length = 486 Score = 207 bits (526), Expect = 6e-51, Method: Composition-based stats. Identities = 67/496 (13%), Positives = 148/496 (29%), Gaps = 57/496 (11%) Query: 263 ENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKG 322 + K + + + + + + K + I Sbjct: 15 DYIEKKANEMHTTHEQVMTNLLAQIDKIDFQERVGLESDYEEPKLK----KQHYLICVVE 70 Query: 323 HFLYTADTKAWYKKDKNNV-YIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSK 381 L A W +++ Y ++ K+ + Sbjct: 71 EILSVASKNQWGLCRSDSLFYAYNGAFWKVID-------------------------KDE 105 Query: 382 SPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIF--SITSDLLDSSSRFLGEQDGILDLE 439 F R + ++ A+SL + S + + + +G ++ Sbjct: 106 LRNFLKTAAERMGVGKFTARYVEFAKSLFDQFTETAYLPSPAISDNKININLANGTFEIS 165 Query: 440 --TGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLG- 496 Q K ++T + + F ++ +G + Sbjct: 166 PTCQQIRKADSADFLTYQLSFAYNREAQAPLFQAFLNRVQPDVSCQHLLAEYLGYVFISP 225 Query: 497 -GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIR 555 K ++ + + G G +GKS +I G V + + + Sbjct: 226 AKLKLEKTLLLYGSGANGKSVFFEIITALLGPDNVSHYSLQSLT-------NEPAYCRAN 278 Query: 556 LMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLF 615 L + SE N ++ A+ KQM G+ + ARL YG + S N+ Sbjct: 279 LATKLLNYASEI--NGKLEASTFKQMVSGEPIEARLPYGQPFIMSK-YAKLIFNCNELPA 335 Query: 616 VRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDV 673 A++RR++++PF+ I +D A K+ W L G+ + + Sbjct: 336 DVEHTPAYFRRFLILPFNVTISEEEQDKELAAKIIRSELSGVFNWVLDGLHRLLEQK-RF 394 Query: 674 DIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLW---EESHSLAKSYSEYREQELNYDR 730 E + E+ ++ +DT + ++D+ + + +L Y +YR + Sbjct: 395 TDCEAVKQQIEDYKRQSDTVRLFLDE-----QGYKPHTTDYSTLQDLYRDYRGFCIEDGY 449 Query: 731 KRISTRTVTLNLKQKG 746 + + ++ G Sbjct: 450 RAVKKLNFRKRIEGYG 465 >gi|166032368|ref|ZP_02235197.1| hypothetical protein DORFOR_02071 [Dorea formicigenerans ATCC 27755] gi|226324022|ref|ZP_03799540.1| hypothetical protein COPCOM_01800 [Coprococcus comes ATCC 27758] gi|166028091|gb|EDR46848.1| hypothetical protein DORFOR_02071 [Dorea formicigenerans ATCC 27755] gi|225207571|gb|EEG89925.1| hypothetical protein COPCOM_01800 [Coprococcus comes ATCC 27758] Length = 600 Score = 207 bits (526), Expect = 7e-51, Method: Composition-based stats. Identities = 62/420 (14%), Positives = 145/420 (34%), Gaps = 35/420 (8%) Query: 376 NNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSS-RFLGEQDG 434 + + ++ R V+ K L A + L+ R++ ++G Sbjct: 182 EDHDGVRMKYRIQKLIYRDQVQS-GVIKRIYNLLIAQPKVHREAYELNKQPVRWINFKNG 240 Query: 435 ILDLETGQKVKPTKELYITKSTGTPFVEGEPS------QEFLDLVSGYFESEEVMDYFTR 488 D G+ ++ + P+ + + ++ ++E F Sbjct: 241 YYDPVKGEMLEHNPDYLTINQIPFPYYPEDCEQVLQGGENIKKYLASSLPNKEEQQTFWE 300 Query: 489 CVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGK 548 G + + Q+F+ ++G GG+GKS ++LI++ G + + D+ + Sbjct: 301 YFGYCMTQDTQFQKFLTLKGNGGTGKSVAVSLIQHVVGITNMSSISLQDLNKRFYATG-- 358 Query: 549 ANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFI 608 + G + ++ N +K+ G D + G + Sbjct: 359 -------MYGKLLNACADIPCKAMENTDVLKKAVGEDTLIYEKK-GQDAIHFHSYAKLLF 410 Query: 609 VPNKHLF-VRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKA 665 N+ + + DA++RR +++ ++ + +D +K + A + +K Sbjct: 411 STNEMPQNLEDKSDAFYRRLLILDMNRVVKSGEKDLHLKEK-VQAESDYAIHMAMIALKN 469 Query: 666 YISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQE 725 +G E + E ++ +D+ A+ID+ + + + Y EY ++ Sbjct: 470 LYEQG-KFTESEHSKECVREVQRTSDSICAFIDESLVRAKGKRLKRSEVFHMYEEYCKEN 528 Query: 726 LNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPA-FESVDDNSNI 784 R+ N+ KGF+ K++ + + + +K F VD I Sbjct: 529 G---RQGHGKSNFFRNMTDKGFLL--------KQYNGEFYYQDIAVKEEDFCPVDPEERI 577 >gi|168702227|ref|ZP_02734504.1| Phage/plasmid primase P4-like protein [Gemmata obscuriglobus UQM 2246] Length = 913 Score = 206 bits (524), Expect = 1e-50, Method: Composition-based stats. Identities = 55/359 (15%), Positives = 121/359 (33%), Gaps = 29/359 (8%) Query: 424 SSSRFLGEQDGILDLET------GQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF 477 ++ +G+LD+ V T + + F F + Sbjct: 538 EQREYIACANGLLDVAELLASGAPTLVPATPLYFTPAAIPVAFDASAKCPRFDSFLERVT 597 Query: 478 -ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEAS 536 E G L + Q+F + G G +GKST + +++ G+ + Sbjct: 598 DGDRERQLILQEIAGYLLRFDTRFQQFFVLTGEGSNGKSTFLAVLRALIGDHNYASVPLE 657 Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNT 596 + +L +G + ++E E D++ AK+K G D M+ Sbjct: 658 EF---------GERFALGVTLGKLVNAVAEVGELDKVAEAKLKSFVGADLMSFDRKNKAP 708 Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDA-----SFAQKLETKY 651 + + + N + + WRRY ++PF I + + + + Sbjct: 709 -ISARPTARLLLSTNTLPRFADRSEGVWRRYQLVPFTTVITDGEKVHGMSDPGWWIASGE 767 Query: 652 TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDI-GENLWEE 710 W L G+ +G +V AK E R+ + ++ +++D + + Sbjct: 768 LPGVLNWALAGLHRLYQQG-GFSSSKVGETAKAEHREICNPHRQFLEDHLQLADADKTVR 826 Query: 711 SHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGL 769 + + +Y E+ RK +S ++ + G+ + + +++ G+ Sbjct: 827 TTEVYAAYVEWCRA-----RKFLSLNDANFGVELRKVFKGVTKVRKRVGRDREQVYAGV 880 >gi|240047623|ref|YP_002961011.1| hypothetical protein MCJ_005030 [Mycoplasma conjunctivae HRC/581] gi|239985195|emb|CAT05208.1| HYPOTHETICAL PROTEIN MCJ_005030 [Mycoplasma conjunctivae] Length = 745 Score = 206 bits (524), Expect = 1e-50, Method: Composition-based stats. Identities = 95/758 (12%), Positives = 216/758 (28%), Gaps = 104/758 (13%) Query: 21 IPLRLGDKRPQRLGKWEEQLLSSEKIDK-LPACGFGFVCGVGEQPLYAFDIDSKD-EKTA 78 IPL + R+ KW + K+ + G + DID+KD +T+ Sbjct: 21 IPLNAD--KSPRIKKWSGTGSTRYKLKEIFSEQNIGMIV---PPNYCVIDIDNKDNPETS 75 Query: 79 NTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAY 138 + L I + + F T + DI + AY Sbjct: 76 TKLINLITRLKLKT--SILETTRGHHFFFHCSIAKPYTDTLLALGIKADIKT--GFKNAY 131 Query: 139 NIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWT 198 + + K W K++ P + + E+ P + S + Sbjct: 132 TMIKQNGKWRKWIQLLEPQKLDYLPRFLTPIGGRIAEKIAELDTPTNLVEGSRRNNFFAR 191 Query: 199 NNN--NRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQ 256 Y+ +EI ++ F + + G Sbjct: 192 VFPLYRLGYSKQEIIDIITYLNIFFVSKP-----ISGHEIKKIFDGFDNIF----INQNL 242 Query: 257 GSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMF 316 YD++ + + F +L + + + Sbjct: 243 TPDYDKD---------------NQGDNQELFANLEATTRQEGLPSPFEFFQGSKFKHNLL 287 Query: 317 SIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDN 376 + Y + + Y + +Y+ K+ ++ + + + + E Sbjct: 288 ADYLIEKYHIKIFNELIYFYNGY-IYVCDEV--KLNGKMLEIVPDL--TMRQIQE----- 337 Query: 377 NKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGIL 436 +++ + + + ++ ++ Sbjct: 338 ----------------------------VTKNILNKPTITYAELEFN----IVALKNNLV 365 Query: 437 DLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESE-EVMDYFTRCVGMALL 495 ++ T + + + +I + + + + ++ +++ +G L Sbjct: 366 NINTREIMPFDPKYFIINQLPIDYDDKADDSQIQRFLKQICSNDIQLVQILMEFLGYCLT 425 Query: 496 GGNKAQRFIHIRGV-GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLI 554 G + Q+ + + G +GKST ++L+ FG N ++ + Sbjct: 426 GDLRYQKALLLFGPSAANGKSTFLSLVIALFGKTNTSNIALENVGK---------RFQTA 476 Query: 555 RLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHL 614 L+ I I + + + A +K + GD +TA + +S NK Sbjct: 477 NLLNKMINIGGDISVDHIKEPATLKNLITGDIITAEFKGRDVFS-FENKAKMIFATNKLP 535 Query: 615 FVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAK-KWFLKGVKAYISKGL 671 + ++RR+I++PF D + KL T L A L+G + G Sbjct: 536 SSGERSNGFFRRFIILPFLTQFKGDNVDINILDKLRTPANLSALFNLALQGYSRLKTNG- 594 Query: 672 DVDIPEVCLKAKEEERQGTDTYQAWIDD---------CCDIGENLWEESHSLAKSYSEYR 722 + + E + + W+++ + + S +Y Y+ Sbjct: 595 EFTHSQKASLLLELYAKKNNPVILWLEENAKQHGEKGRIYLKKGTIIRQSSPYDTYLNYQ 654 Query: 723 EQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEW 760 Y K +S + + GI+ + W Sbjct: 655 SFCEKYGYKPLSVINFSEEIITYYADEGIQSDGQFWRW 692 >gi|21226253|ref|NP_632175.1| hypothetical protein MM_0151 [Methanosarcina mazei Go1] gi|20904491|gb|AAM29847.1| conserved protein [Methanosarcina mazei Go1] Length = 628 Score = 206 bits (523), Expect = 1e-50, Method: Composition-based stats. Identities = 57/345 (16%), Positives = 128/345 (37%), Gaps = 15/345 (4%) Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ-EFLDLVSGYF-ESEEVMD 484 + +G+LD+ T + + E + + + +F+++++ F SEE + Sbjct: 227 NLIPVGNGVLDINTMELSDYSPETVLLTKFPRDYNPSAATPSKFMEMLNTTFDGSEEQIK 286 Query: 485 YFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544 G L + + G G +GK+TL+N++ G + + S++ Sbjct: 287 LVQEMFGYCFLRSYFLEVIFFLIGNGRNGKTTLLNILGALLGGE--ESGHISNLSFKDLS 344 Query: 545 EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604 E N L L G I +T ++ IK++TG D + AR Y +++ + Sbjct: 345 EPKNEN-MLCDLYGRYANICGDTGKHKIKETDYIKKVTGNDFVRARKLYKDSF-NFKSFA 402 Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN---RDASFAQKL--ETKYTLEAKKWF 659 + N+ V + D + RR +I F+ + + + ++ + + W Sbjct: 403 KVILAFNQLPEVDDFSDGFKRRIRIIEFNHKFEDGAGANKNIEAEITGDEEEMEGIFLWA 462 Query: 660 LKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYS 719 ++G+K + + E + ++ ++ +C + L + Y Sbjct: 463 MEGLKRILENN-SFSDKRSIVSRGMEYARKSNPMHYFVRECIVESPGHFVNKADLIEKYV 521 Query: 720 EYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKR 764 EY E +++ + L + I + + K+ R Sbjct: 522 EYAEYN---KMPQLTPQAFKKGLIAECTDISINTFEKRDQTKTGR 563 >gi|170756489|ref|YP_001781751.1| phage primase [Clostridium botulinum B1 str. Okra] gi|169121701|gb|ACA45537.1| phage primase, P4 family [Clostridium botulinum B1 str. Okra] Length = 621 Score = 205 bits (522), Expect = 2e-50, Method: Composition-based stats. Identities = 67/492 (13%), Positives = 162/492 (32%), Gaps = 37/492 (7%) Query: 282 KKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNV 341 + S + + K + K + NK + + K + Sbjct: 159 RNSSLYGYILTLQQKGLTKEDIRETIK-IINKDILKDPLDEKEIEVILRDE--AFLKESF 215 Query: 342 YIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSK 401 YI + L D + + ++ + + + + ++ + Sbjct: 216 YI-------KSKLQYEKLALYLRDNEKIIKINDELHIYKNNYYSSDTKEIEKTMLKYINN 268 Query: 402 AKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFV 461 + ++ ++ + + + ++ +++ +GI DLE+ + ++ I + Sbjct: 269 STNSTRTEVLRYLDLLCKNSKMANPKYITLDNGIFDLESKKLLEFNSPYIIKNRIPWSYN 328 Query: 462 EGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNL 520 SQ + + +++ +G L N+ + + G G +GKSTL+ + Sbjct: 329 PNAYSQTMDKTLDKICCKDKQLRLLIEEMIGYTLFRRNELGKAFILTGQGANGKSTLLEV 388 Query: 521 IKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQ 580 + G + + + ++ +L G I + + + + K+ Sbjct: 389 LNELLGEENIASVSLEEL---------NHRFKTFQLEGKLANIGDDISNKYIEDNSTFKK 439 Query: 581 MTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD 640 + G+ + + + + N+ + + RR I IPF+ + +D Sbjct: 440 LVTGEKVNVERKGRDPF-DFKNYSKLIFSANELPRINDLSGGLKRRLIFIPFNATFSKKD 498 Query: 641 ASFA----QKLETKYTLE-AKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQA 695 + KL + +E K L+G+ + EVC + EE + Sbjct: 499 KDYDPFILDKLTSHEAMEYLLKLALQGLNRVLIN-HSFTHAEVCNQVWEEYEAINNPVVG 557 Query: 696 WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755 +++D + E + YS + + K +S +K++G+ Sbjct: 558 FLED----NDIENEPVKEIYLRYSAWCSENG---LKSVSKPVFGREVKKQGYNSDS---V 607 Query: 756 IEKEWKSKRIIK 767 I K KRI K Sbjct: 608 IRVNGKQKRIYK 619 >gi|300215227|gb|ADJ79643.1| DNA primase [Lactobacillus salivarius CECT 5713] Length = 464 Score = 205 bits (522), Expect = 2e-50, Method: Composition-based stats. Identities = 73/409 (17%), Positives = 140/409 (34%), Gaps = 20/409 (4%) Query: 367 FDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSS 426 ++ + + + + N + + + I + + + Sbjct: 70 YNQNNGLWEIMTKEEIEKIVTNKIDGINAWNAKDVSDTRKYIMNKAIIKQASETIDNVDP 129 Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFV-EGEPSQEFLDLVSGYFESEEVMDY 485 + ++G+ + T + E YI P+ + +S Y Sbjct: 130 FKVHFKNGVYNFITDKLEPNKPENYIFHGRNYNLDTSNTPTPLTDNWLSESVGDA--KKY 187 Query: 486 FTRCVGMALLGGN-KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544 +G K Q F + GG+GKST N + A G + N D+ N+ Sbjct: 188 IMEFIGYIFYRSYEKIQNFTILLAGGGNGKSTFFNWLSDAVGIDNISNVSLQDLTDNQR- 246 Query: 545 EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604 + RL + ++ ++ + A +K +TG D + G Sbjct: 247 -----RFTTSRLYQKNMNYYADISKGLINDPALLKSITGDDALDVENK-GKDQRTIKPFA 300 Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVK 664 F N+ ++ + RR +++PF+ I + + F K LK K Sbjct: 301 KLFFGANELPPFKDTSKGFGRRPMIVPFEA-IEDFNERFKMVEIKKEIPAFIYKCLKAFK 359 Query: 665 AYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQ 724 + +G + PE+ + E D +IDD C++ +N + L SY +Y + Sbjct: 360 KALERGYLSETPEMIK-LRNEWLGSNDIVGLFIDDYCELNKNYNIKKVYLYDSYKQYCLE 418 Query: 725 ELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773 + +S + LK+ R K+ K RI +G+KLKP Sbjct: 419 NG---YRAMSNQKFKQELKRFNVFDRYAR----KDGKMMRIFEGIKLKP 460 >gi|126661282|ref|ZP_01732353.1| hypothetical protein CY0110_01270 [Cyanothece sp. CCY0110] gi|126617438|gb|EAZ88236.1| hypothetical protein CY0110_01270 [Cyanothece sp. CCY0110] Length = 1056 Score = 205 bits (522), Expect = 2e-50, Method: Composition-based stats. Identities = 67/510 (13%), Positives = 148/510 (29%), Gaps = 44/510 (8%) Query: 306 RFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIW----SLTLDKITASIMNFLVS 361 ++S+ F K ++ T W+ IW + L++ + L Sbjct: 319 KWSEEGLTLYFEKLYKDRLIFEDKTGDWHLYGAEKEGIWGQISKIQLERRIILELRELKQ 378 Query: 362 MKEDVF-----DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFS 416 E + + + N + ++ E + + I Sbjct: 379 QFEQINGQIALAIKSVKDSNRSRDEKKEIIDQLKAQKPTYREITINFVEKLGKKLSRILL 438 Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY 476 + ++ + ++G+LD+ET + Y T S + + + Sbjct: 439 VKEMACNAHKGLIPFKNGVLDIETRDLWPHSPTNYFTWSLPYDYNPLATGEPIKQWLLEM 498 Query: 477 F-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535 E +++ + + G Q+F+ + G GG+GKSTL+ L G Sbjct: 499 MQGDESLVELIRAYLHGVVTGRADWQKFLELIGPGGTGKSTLIRLAIALVGFSNCHVTTL 558 Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595 + ++ + R+V++++ + +K +TG D + Sbjct: 559 KRLETSK--------FETANIKDKRLVLVTDAERYTG-DVTTLKALTGEDSLPYEKKMQQ 609 Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLE------- 648 I N+H+ + RR I + + I+ + K + Sbjct: 610 ATGGFKPDCLVIIAGNEHIKTADYTSGLQRRRITVGMKRKISEENQKNLIKHDNQGNISG 669 Query: 649 --TKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKE--EERQGTDTYQAWIDDCCDIG 704 Y W L+ S+ + E E + AW+++ Sbjct: 670 EFVPYIPGFLNWVLEMESESASECIKNAHKRCVKLTLERIESMVENNPIAAWLNENIIYD 729 Query: 705 ENLWE---------ESHSLAKS-----YSEYREQELNYDRKRISTRTVTLNLKQKGFIGG 750 + + E+ + Y Y IS + L Sbjct: 730 PDSYTHVGKAIASKENDEVYVGASKWLYPNYCAFCEGIKVNPISLNRFSTLLLDLCNHQL 789 Query: 751 IKREKIEKEWKSKRIIKGLKLKPAFESVDD 780 + + ++ I+GLK++ + Sbjct: 790 NLGDVAKDRNRNGVFIQGLKIRDHLDDEAP 819 >gi|229119301|ref|ZP_04248604.1| Phage / plasmid primase, P4 [Bacillus cereus Rock1-3] gi|228664167|gb|EEL19705.1| Phage / plasmid primase, P4 [Bacillus cereus Rock1-3] Length = 622 Score = 205 bits (522), Expect = 2e-50, Method: Composition-based stats. Identities = 52/420 (12%), Positives = 135/420 (32%), Gaps = 36/420 (8%) Query: 355 IMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSI 414 I + +V + +E ++K + ++ + + Sbjct: 230 INEHHICKVTNVLHIYKEGVYSDKQEDIEEAMIRHIPALKRMQRQETIAYLQLKAKHKNF 289 Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVS 474 S ++ ++G+ +LET Q T E+ ++ G + + Sbjct: 290 ASTK---------YVVVKNGVFNLETWQLEDFTPEIITRNKIPVAYIPGAYYEITDKTFN 340 Query: 475 GY-FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533 ++V +G L N+ + G G +GKS+ + +I+ G+ + Sbjct: 341 KIAVNDKKVRAILEEILGYILFRRNEFAATFILTGDGSNGKSSYLKIIRKLIGSDNASSL 400 Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593 + +++ Q L G I + + ++ K+++ G+ + Sbjct: 401 DLNELDQ---------RFKTAELFGKLANIGDDIGKGYIKESSIFKKLSTGETLNVERKG 451 Query: 594 GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFA----QKLET 649 + + + N+ + + D RR ++PF D + KL + Sbjct: 452 KDPF-DFTNYAKLIFSANEMPRINDFSDGLGRRLQIVPFKAKFTPNDDDYDPFITDKLLS 510 Query: 650 KYTLE-AKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWI-DDCCDIGENL 707 +++ LK +K + + + + ++ + +++ ++ ++ Sbjct: 511 DESMQYVLNLALKSLKRLLVEK-KFTKSKAVEDELIKYQEENNPIISFVNNEDVELE--- 566 Query: 708 WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIK 767 + Y Y + + +S + + Q G K + K+KRI Sbjct: 567 RAVVGDVYLQYKVYCAENG---FQSVSNINFSKQVTQL---FGYKSHVQRVDGKNKRIFV 620 >gi|168178720|ref|ZP_02613384.1| phage/plasmid primase, P4 family [Clostridium botulinum NCTC 2916] gi|182670306|gb|EDT82280.1| phage/plasmid primase, P4 family [Clostridium botulinum NCTC 2916] Length = 621 Score = 205 bits (521), Expect = 2e-50, Method: Composition-based stats. Identities = 66/492 (13%), Positives = 162/492 (32%), Gaps = 37/492 (7%) Query: 282 KKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNV 341 + S + + K + K + NK + + K + Sbjct: 159 RNSSLYGYILTLQQKGLTKEDIRETIK-IINKDILKDPLDEKEIEVILRDE--AFLKESF 215 Query: 342 YIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSK 401 YI + L D + + ++ + + + + ++ + Sbjct: 216 YI-------KSKLQYEKLALYLRDNEKIIKINDELHIYKNNYYSSDTKEIEKTMLKYINN 268 Query: 402 AKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFV 461 + ++ ++ + + + ++ +++ +GI DLE+ + ++ I + Sbjct: 269 STNSTRTEVLRYLDLLCKNSKMANPKYITLDNGIFDLESKKLLEFNSPYIIKNRIPWSYN 328 Query: 462 EGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNL 520 SQ + + +++ +G L N+ + + G G +GKSTL+ + Sbjct: 329 PNAYSQTMDKTLDKICCKDKQLRLLIEEMIGYTLFRRNELGKAFILTGQGANGKSTLLEV 388 Query: 521 IKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQ 580 + G + + + ++ +L G I + + + + K+ Sbjct: 389 LNELLGEENIASVSLEEL---------NHRFKTFQLEGKLANIGDDISNKYIEDNSTFKK 439 Query: 581 MTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD 640 + G+ + + + + N+ + + RR I IPF+ + +D Sbjct: 440 LVTGEKVNVERKGRDPF-DFKNYSKLIFSANELPRINDLSGGLKRRLIFIPFNATFSKKD 498 Query: 641 ASFA----QKLETKYTLE-AKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQA 695 + KL + +E K L+G+ + EVC + EE + Sbjct: 499 KDYDPFILDKLTSHEAMEYLLKLALEGLNRVLIN-HSFTHAEVCNRVWEEYEAINNPIVG 557 Query: 696 WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755 +++D + E + YS + + K +S +K++G+ Sbjct: 558 FLED----NDIENEPVKEVYLRYSAWCSENG---LKSVSKPVFGREVKKQGYNSD---TV 607 Query: 756 IEKEWKSKRIIK 767 I K KR+ K Sbjct: 608 IRVNGKQKRVYK 619 >gi|221142329|ref|ZP_03566822.1| putative DNA primase-phage associated protein [Staphylococcus aureus subsp. aureus str. JKD6009] gi|302750250|gb|ADL64427.1| putative DNA primase-phage associated [Staphylococcus aureus subsp. aureus str. JKD6008] Length = 456 Score = 205 bits (521), Expect = 3e-50, Method: Composition-based stats. Identities = 70/349 (20%), Positives = 130/349 (37%), Gaps = 21/349 (6%) Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDY 485 R++G ++GI D + + + YIT F +G S + E EEV Sbjct: 101 RYIGLKNGIYDTVEERLNPFSPQYYITNIIDVDFDKGAQSDLIERFIKDISNEDEEVEQL 160 Query: 486 FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545 +G L N Q GG+GK+TL+ L+ + + + +D+ P Sbjct: 161 IYEMIGYGLYRDNFLQVAFFYYSPGGNGKTTLLKLLHHFYNPENTTALSFNDLNDKFKP- 219 Query: 546 AGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFT 605 L G + I + + N + K + G+ +T + + E Sbjct: 220 --------ANLQGKLVNIADDIDPNRIKDTGNFKIIVTGNYITLEFKGQDAF-EFKPYVK 270 Query: 606 PFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA----NRDASFAQKLETKY-TLEAKKWFL 660 N+ + + ++RR ++IP + +D KL T + L Sbjct: 271 LIFASNELPMSNDKSEGFYRRMVIIPMLRKFGKGGQKKDPMLLNKLITPHNMSALLNLAL 330 Query: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLW--EESHSLAKSY 718 KG+K + ++ P++ K KEE + + +I+D D E + K+Y Sbjct: 331 KGLKRTLENN-EIIEPKIARKTKEEYQFENNPVLQFIEDATDKDYRQLPVVEGRNTDKAY 389 Query: 719 SEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIK 767 Y+ +N ++ + L + G+ ++E+ KSKR K Sbjct: 390 EIYQIWCVNNGYHHLNKFNFSKELAKIGYKTVSYYSRVEE--KSKRFYK 436 >gi|322806854|emb|CBZ04424.1| hypothetical protein H04402_02617 [Clostridium botulinum H04402 065] Length = 391 Score = 205 bits (521), Expect = 3e-50, Method: Composition-based stats. Identities = 55/350 (15%), Positives = 125/350 (35%), Gaps = 27/350 (7%) Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEV 482 ++ +++ ++GI DLE + ++ I + S+ ++ + +++ Sbjct: 61 TNPKYITLENGIFDLENKKLLEFNSSHIIKNKISWSYNPNAYSETMDKTLNKICCKDKQL 120 Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542 +G L N+ + + G G +GKSTL+ ++ G + + + ++ Sbjct: 121 RLLIEEMIGYTLFRRNELGKAFILTGQGANGKSTLLEVLNELLGEENIASVSLEEL---- 176 Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602 +L G I + + + + K++ G+ + + + + Sbjct: 177 -----NHRFKTFQLEGKLANIGDDISNKYIEDNSTFKKLVTGEKVNVERKGRDPF-DFKN 230 Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFA----QKLETKYTLE-AKK 657 N+ + + RR I IPF+ + +D + KL + +E K Sbjct: 231 YSKLIFSANELPRINDLSGGLKRRLIFIPFNATFSKKDKDYDPFILDKLTSHEAMEYLLK 290 Query: 658 WFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKS 717 L+G+ + EVC + EE + +++D + E + Sbjct: 291 LALEGLNRVLIN-HSFTHAEVCNRVWEEYEAINNPIVGFLED----NDIENEPVKEVYLR 345 Query: 718 YSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIK 767 YS + + K +S +K++G+ I K KR+ K Sbjct: 346 YSAWCSENG---LKSVSKPVFGREVKKQGYNSD---TVIRVNGKQKRVYK 389 >gi|264680173|ref|YP_003280082.1| Phage/plasmid primase P4, C-terminal protein [Comamonas testosteroni CNB-2] gi|262210688|gb|ACY34786.1| Phage/plasmid primase P4, C-terminal protein [Comamonas testosteroni CNB-2] Length = 372 Score = 205 bits (520), Expect = 3e-50, Method: Composition-based stats. Identities = 59/344 (17%), Positives = 120/344 (34%), Gaps = 27/344 (7%) Query: 425 SSRFLGEQDGILDL--ETGQKVKPTKELYITKSTGTPFVEGEPSQ-EFLDLVSGYFESEE 481 + L ++G L L K + G + P F + + Sbjct: 37 DAAVLPLKNGYLHLAPTGNVLQPHDKAAGLQYVIGCDYDSTAPEPARFNHFLQTILPDVD 96 Query: 482 VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQN 541 V + VG LL ++ QR G G +GK L N+++ + +A D Sbjct: 97 VRNRVQEYVGYTLLPDSRFQRLQLWLGNGANGKGVLANIVQALHAKCAAVQLDALD---- 152 Query: 542 RPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESP 601 L L+G+ ++ ET + +N +K G+ + Y P Sbjct: 153 --------GFKLAGLIGASLIYADETPQ-RGMNEQILKSAVAGELLQIDRKYREP-LTLP 202 Query: 602 ASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWF 659 ++ N+ + + + WRR+ ++PF I +RD A + W Sbjct: 203 LKGKWLVLANQFPSITDQSNGLWRRFDIVPFPVTIPERDRDPMLASTIIKTELSGVLNWS 262 Query: 660 LKGVKAYISKG-LDVDIPEVCLKAKEEERQGTDTYQAWIDDC-CDIGENLWEESHSLAKS 717 L G++ + +G D +P A+ + ++ T++ Q+W DD ++ + + + Sbjct: 263 LIGLQRLLERGRFDECLPSPMRSARRDVQRETNSVQSWADDRGIELSIAVETSKTDVYAN 322 Query: 718 YSEYREQELNYDRKRISTRTVTLNLKQ---KGFIGGIKREKIEK 758 Y + + +++ + G + G K + Sbjct: 323 YVSWCRENGMS---PVASPKFWKRMPDTVGHGLVDGRKTITTGR 363 >gi|73663249|ref|YP_302030.1| primase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72495764|dbj|BAE19085.1| putative primase [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 780 Score = 204 bits (519), Expect = 4e-50, Method: Composition-based stats. Identities = 97/746 (13%), Positives = 209/746 (28%), Gaps = 83/746 (11%) Query: 27 DKRPQRLGKWEEQLLSSEKIDKLPA-----------CGFGFVCGVGEQPLYAFDIDSK-D 74 K P ++ + + + G GF+ + + DID+ D Sbjct: 42 KKVPYQVNGVKASSTNKDTWSNFQDVYSLYDSSNGYDGIGFILSKESKHIC-LDIDNAVD 100 Query: 75 EKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQY 134 +T + + + L F +K +++ ++ Sbjct: 101 AETHQLQTELGLEMTELTYCELSPSGTGLHCFFKGTLPENRKSKRTDL--DIELYHTSRF 158 Query: 135 FVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPS 194 ++ D + + VE FK K I + Sbjct: 159 MTFTG------------YTIGGSEISDDQGVIDNLVERFFKA------EPKKQNIRIAKT 200 Query: 195 KTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAV-----HHETRGSSKGKEI 249 + ++ + Y G D V ++ + R S+ + I Sbjct: 201 GSSIFTDDEIVRMMTKKSKYKKLLAGEYEGIFDSPSEAVQSLLRVLAFYTGRDKSQMESI 260 Query: 250 ARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSD 309 ++ +DE+ N W + + + Y L S Sbjct: 261 FLTYNNLTDKWDEKRGNSTWGNNELDTAIANQET-------IYEPNSRGTGQSLRYTIS- 312 Query: 310 AYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDL 369 K + K K + S + +K +FD+ Sbjct: 313 LIRKEELAFMKAEF----EKAKENGEASGRPPQTISSNR-----CAVLLNDVIKFVIFDM 363 Query: 370 SEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDS--SSR 427 E + S + NT ++ + + ++LE + D++D Sbjct: 364 EENTKLAMYQSDKGIYTQNTAIIKRIISWLEPRHNEKKALEVIYHLTNMVDVVDKTNEPH 423 Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE-----FLDLVSGY-FESEE 481 + +G+ + ++ + T + T T +++ + F + + E Sbjct: 424 LIPVNNGVFNRKSMKLESFTPKYIFTTKISTNYIDNPKTPVINGWSFDNWLEEVACGDRE 483 Query: 482 VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQN 541 V + + +L G ++ I + G G + K + L+ G V + + ++ Q Sbjct: 484 VFTLLWQVINDSLNGNYTRKKAIFLVGDGNNAKGSYQTLLTNLIGFDNVASLKVNEFDQE 543 Query: 542 RPPEAGKANPSLIRLMGSRIVIISETNENDEI-NAAKIKQMTGGDCMTARLNYGNTYSES 600 L L G +VI + I +++ + GD + + Y Sbjct: 544 ---------FKLGVLEGKTLVIGDDVPVGVNIEDSSNFNSVITGDPVLVNIKNKQPYRTV 594 Query: 601 PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEAKKW 658 T N +N RR +++PF+ A + + +K T ++ Sbjct: 595 -FRTTVIQSTNGMPRFKNKTGGTNRRLLIVPFNADFNGAKENPNIKEKYLTDKK--VLEY 651 Query: 659 FLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSY 718 L +P K EE Q D + D + + Y Sbjct: 652 VLHKAINLNFN--KFIVPRASAKLLEEYIQDNDPVYDFKVTEFDKWKIDKVPKAVVYFRY 709 Query: 719 SEYREQELNYDRKRISTRTVTLNLKQ 744 + E + +S R + ++ Sbjct: 710 KVFCE---RGGYRALSERKFCKSFER 732 >gi|294338996|emb|CAZ87341.1| putative Phage/plasmid primase P4, C-terminal [Thiomonas sp. 3As] gi|294341823|emb|CAZ90252.1| putative Phage/plasmid primase P4, C-terminal [Thiomonas sp. 3As] Length = 426 Score = 204 bits (519), Expect = 4e-50, Method: Composition-based stats. Identities = 70/434 (16%), Positives = 134/434 (30%), Gaps = 52/434 (11%) Query: 337 DKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNV 396 D N +Y W+ T + V + + +N++ Sbjct: 24 DSNLLYQWTGTHWSPIDEEAAERDAYAWLVAQ--DPAWASAENARKA------------- 68 Query: 397 EENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQK--VKPTKELYITK 454 + A S+FS L + + + Q G + L+ + L +T Sbjct: 69 ------------VRAASLFSPRLPKL-TDAVVVPTQSGYVHLDGAELVLKPADPSLGLTH 115 Query: 455 STGTPFVEGEPSQ-EFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSG 513 P+ F V V +G LL + QR G G +G Sbjct: 116 CLDCPYAPEGVMPAHFAAFVQRVLPDPSVRARVQEYIGYTLLADARYQRAQFWLGEGANG 175 Query: 514 KSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI 573 K L N+++ G+ + + A L L+G+ +V + E I Sbjct: 176 KGVLANVVQALHGHIAAMALDQL------------AGFHLSVLVGASLVYVDEVPR-KPI 222 Query: 574 NAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFD 633 + ++K M G+ + Y ++ N + + +WRR+ V+PF Sbjct: 223 DEQRLKSMIAGERIPVDRKYREP-LSIHVRGKWLVLGNHLPAISDHSSGFWRRWDVVPFS 281 Query: 634 KPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYI-SKGLDVDIPEVCLKAKEEERQGT 690 I RD AQ + + +W L G+ G D +P +E + T Sbjct: 282 VTIPERERDPLLAQTIVREELSGVLRWALDGLVRLQTRGGFDPVMPAAMQAMLQEAKADT 341 Query: 691 DTYQAWIDDC-CDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIG 749 ++ AW++D + + + Y + +S +++ Sbjct: 342 NSVVAWVEDLGVKLQLACDVPKERVFEHYRNWCAVN---AMHEVSVVQFWKRVREHFREL 398 Query: 750 GIKREKIEKEWKSK 763 R + + Sbjct: 399 TEARIRTGPGQRRV 412 >gi|330684410|gb|EGG96135.1| phage/plasmid primase, P4 family, C-terminal domain protein [Staphylococcus epidermidis VCU121] Length = 455 Score = 204 bits (519), Expect = 4e-50, Method: Composition-based stats. Identities = 65/347 (18%), Positives = 127/347 (36%), Gaps = 19/347 (5%) Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDY 485 R++G ++GI D+ + + + YIT F E S + + EEV Sbjct: 101 RYIGLKNGIYDIVEEKLKAFSPQYYITNIIDVDFNEQAQSDLIERFIKDISNDDEEVEQL 160 Query: 486 FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545 +G L N Q GG+GK+TL+ L+ + + + +D+ P Sbjct: 161 IYEMIGYGLYRDNFLQVAFFYYSPGGNGKTTLLKLLHHFYNPENTTALSFNDLNDKFKP- 219 Query: 546 AGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFT 605 L G + I + + N + K + G+ +T + + E Sbjct: 220 --------ANLQGKLVNIADDIDPNRIKDTGNFKIIVTGNYITLEFKGQDAF-EFKPYVK 270 Query: 606 PFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA----NRDASFAQKLETKY-TLEAKKWFL 660 N+ + + ++RR ++IP + +D KL T + L Sbjct: 271 LIFASNELPMSNDKSEGFYRRMVIIPMLRKFGKGGQKKDPMLLNKLITPHNMSALLNLAL 330 Query: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLW--EESHSLAKSY 718 KG+K + ++ P++ K KEE + + +I+D D E + K+Y Sbjct: 331 KGLKRTLENN-EIIEPKITRKTKEEYQFDNNPVLQFIEDATDKDYRQLPVVEGRNTDKAY 389 Query: 719 SEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRI 765 Y+ N ++ + L + G+ K++++ K + Sbjct: 390 EIYQIWCANNGYHHMNKMNFSKELSKLGYKSVAYWSKVQEKTKRFYV 436 >gi|242243105|ref|ZP_04797550.1| P4 family phage / plasmid primase [Staphylococcus epidermidis W23144] gi|242233453|gb|EES35765.1| P4 family phage / plasmid primase [Staphylococcus epidermidis W23144] Length = 624 Score = 204 bits (518), Expect = 6e-50, Method: Composition-based stats. Identities = 73/552 (13%), Positives = 176/552 (31%), Gaps = 55/552 (9%) Query: 223 NGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAK 282 NG+ +WI R + + +W + D F GD + Sbjct: 118 NGTFRKWIK---------RVEDEQLDELPKWLEASFKNDPG--------FSELGEGD-GR 159 Query: 283 KRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVY 342 ++ F + K + + ++ +A+ K+ Sbjct: 160 NQTLFNYILKLQQIAFSKDEIRNTIRIINKHILYEPISDKELDVILRDEAFLKESFFING 219 Query: 343 IW-SLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSK 401 + K S + + D+ + + ++K R + ++ Sbjct: 220 KFQHDLFAKFLISEYHIIRIA--DILHIYIDGYYSDKQDDIERLMIKHIPGLKKIQRQET 277 Query: 402 AKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFV 461 + + + +L +GI DL T T E+ + P++ Sbjct: 278 LSYLQLQTKQKELSPV---------NYLTLANGIYDLNTNSMQSFTPEIIVKNKIPVPYI 328 Query: 462 EGEPSQEFLDLVSGY-FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNL 520 E + + E+ + F +G L N+ +F + G G +GKS+ + + Sbjct: 329 ENSYHEITDKTFNKLAVNDHELRNLFEEILGYTLFRRNEYGKFFILTGGGSNGKSSFLKI 388 Query: 521 IKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQ 580 ++ G+ + D+ L G + + + + ++A++K Sbjct: 389 LRALVGDTNTSSVALKDVNG---------RFKTAELFGKLVNLGDDIGKGFIKDSAELKN 439 Query: 581 MTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD 640 + G+ + + + + N+ + + D RR +++PF N D Sbjct: 440 LATGETLVVERKGKDPF-DLRNYAKLIFSANEVPRIDDKTDGLNRRLMIVPFKAKFTNTD 498 Query: 641 ASFA----QKLETKYTLEA-KKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQA 695 + KL + +L+ ++G+ + P+ E ++ + A Sbjct: 499 IDYDPFIIDKLLSPDSLQYCLVMAIRGLNRLLKNN-RFTKPKTVTAEIEAYKERNNPVLA 557 Query: 696 WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755 ++++ + + E + + YSEY + Y K +S T + + ++ ++ Sbjct: 558 FLNN--EEPKLENESTKDIYTQYSEYCVE---YGYKSVSRAVFTKEVCRL---KKVESKQ 609 Query: 756 IEKEWKSKRIIK 767 I + I Sbjct: 610 IRVNGIREHIYV 621 >gi|90962627|ref|YP_536543.1| DNA primase [Lactobacillus phage Sal3] gi|90821821|gb|ABE00460.1| DNA primase [Lactobacillus phage Sal3] Length = 464 Score = 203 bits (517), Expect = 7e-50, Method: Composition-based stats. Identities = 74/409 (18%), Positives = 141/409 (34%), Gaps = 20/409 (4%) Query: 367 FDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSS 426 ++ + + + + N + + + I + + + Sbjct: 70 YNQNNGLWEIMTKEEIEKIVTNKIDGINAWNAKDVSDTRKYIMNKAIIKQASETIDNVDP 129 Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGE-PSQEFLDLVSGYFESEEVMDY 485 + ++G+ + T + E YI P+ + +S E Y Sbjct: 130 FKVHFKNGVYNFITDKLEPNKPENYIFHGRNYNLDTNNTPTPLTDNWLSESVEDA--KQY 187 Query: 486 FTRCVGMALLGGN-KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544 +G K Q F + GG+GKST N + A G + N D+ N+ Sbjct: 188 IMEFIGYIFYRSYEKIQNFTILLAGGGNGKSTFFNWLSDAVGIDNISNVSLQDLTDNQR- 246 Query: 545 EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604 + RL + ++ ++ + A +K +TG D + G Sbjct: 247 -----RFTTSRLYQKNMNYYADISKGLINDPALLKSITGDDALDVENK-GKDQRTIKPFA 300 Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVK 664 F N+ ++ + RR +++PF+ I + + F K LK K Sbjct: 301 KLFFGANELPPFKDTSKGFGRRPMIVPFEA-IEDFNERFKMVEIKKEIPAFIYKCLKAFK 359 Query: 665 AYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQ 724 + +G + PE+ + E D +IDD C++ +N + L SY +Y + Sbjct: 360 KALERGYLSETPEMIK-LRNEWLGSNDIVGLFIDDYCELNKNYNIKKVYLYDSYKQYCLE 418 Query: 725 ELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773 + +S + LK+ R K+ K RI +G+KLKP Sbjct: 419 NG---YRAMSNQKFKQELKRFNVFDRYAR----KDGKMMRIFEGIKLKP 460 >gi|70727094|ref|YP_254008.1| putative DNA primase-phage associated [Staphylococcus haemolyticus JCSC1435] gi|68447818|dbj|BAE05402.1| putative DNA primase-phage associated [Staphylococcus haemolyticus JCSC1435] Length = 455 Score = 203 bits (517), Expect = 8e-50, Method: Composition-based stats. Identities = 70/369 (18%), Positives = 135/369 (36%), Gaps = 29/369 (7%) Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDY 485 R++G ++GI D + + + YIT F + S + E EEV Sbjct: 101 RYIGLKNGIYDTLEEKLKSFSPQYYITNIIDVDFDKDAQSDLIEKFIKDISNEDEEVEQL 160 Query: 486 FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545 +G L N Q GG+GK+TL+ L+ + + + +D+ P Sbjct: 161 IYEMIGYGLYRDNFLQVAFFYYSPGGNGKTTLLKLLHHFYNPENTTALSFNDLNDKFKP- 219 Query: 546 AGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFT 605 L G + I + + N + K + G+ +T + + E Sbjct: 220 --------ANLQGKLVNIADDIDPNRIRDTGNFKIIVTGNYITLEFKGQDAF-EFKPYVK 270 Query: 606 PFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA----NRDASFAQKLETKY-TLEAKKWFL 660 N+ + + ++RR ++IP + +D KL T + L Sbjct: 271 LIFASNELPMSNDKSEGFYRRMVIIPMLRKFGKDGQKKDPMLLNKLITPHNMSALLNLAL 330 Query: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLW----EESHSLAK 716 KG+K + ++ P++ K KEE + + +I+D ++ E + K Sbjct: 331 KGLKRTLENN-EIIEPQIARKTKEEYQHDNNPVLQFIEDA--EDKDYRQLPVVEGRNTDK 387 Query: 717 SYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFE 776 +Y Y+ N ++ + L + G+ K ++ K+KR +K Sbjct: 388 AYEIYQIWCANNGYHNMNKMNFSKELSKLGYKSVAYWSKAQE--KTKRFY----VKDTTN 441 Query: 777 SVDDNSNII 785 + D++ II Sbjct: 442 VIYDSNGII 450 >gi|251810225|ref|ZP_04824698.1| DNA primase-phage associated protein [Staphylococcus epidermidis BCM-HMP0060] gi|251806277|gb|EES58934.1| DNA primase-phage associated protein [Staphylococcus epidermidis BCM-HMP0060] Length = 455 Score = 203 bits (516), Expect = 8e-50, Method: Composition-based stats. Identities = 66/347 (19%), Positives = 126/347 (36%), Gaps = 19/347 (5%) Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDY 485 R++G ++GI D + + + YIT F E S + + EEV Sbjct: 101 RYIGLKNGIYDTIEEKLNSFSPQYYITNIIDVDFNEQAQSDLIERFIKDISNDDEEVEQL 160 Query: 486 FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545 +G L N Q GG+GK+TL+ L+ + + + +D+ P Sbjct: 161 IYEMIGYGLYRDNFLQVAFFYYSPGGNGKTTLLKLLHHFYNPENTTALSFNDLNDKFKP- 219 Query: 546 AGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFT 605 L G + I + + N + K + G+ +T + + E Sbjct: 220 --------ANLQGKLVNIADDIDPNRIKDTGNFKIIVTGNYITLEFKGQDAF-EFKPYVK 270 Query: 606 PFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA----NRDASFAQKLETKY-TLEAKKWFL 660 N+ + + ++RR ++IP + +D KL T Y L Sbjct: 271 LIFASNELPMSNDKSEGFYRRMVIIPMLRKFGKGGQKKDPMLLNKLITPYNMSALLNLAL 330 Query: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLW--EESHSLAKSY 718 KG+K + ++ P++ K KEE + + +I+D D E + K+Y Sbjct: 331 KGLKRTLENN-EIIEPKIARKTKEEYQFDNNPVLQFIEDATDKDYRQLPVVEGRNTDKAY 389 Query: 719 SEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRI 765 Y+ N ++ + L + G+ K++++ K + Sbjct: 390 EIYQIWCANNGYHHMNKMNFSKELSKLGYKSVAYWSKVQEKTKRFYV 436 >gi|227544673|ref|ZP_03974722.1| possible ATPase [Lactobacillus reuteri CF48-3A] gi|227185349|gb|EEI65420.1| possible ATPase [Lactobacillus reuteri CF48-3A] Length = 207 Score = 203 bits (516), Expect = 8e-50, Method: Composition-based stats. Identities = 58/215 (26%), Positives = 92/215 (42%), Gaps = 14/215 (6%) Query: 565 SETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWW 624 +E E +N + +KQ+ D + A Y +S S T + N V D+ W Sbjct: 2 AELEEGKRLNTSIVKQLCSTDEIYAEKKYMKPFS-FTPSHTIVLYTNYLPHVGGNDEGIW 60 Query: 625 RRYIVIPFDKPIANRD--ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKA 682 RR IVIPF IA R+ ++AQ+L K +W ++G + I + + P KA Sbjct: 61 RRLIVIPFKAKIAKRNDIKNYAQRLTEKAGPAVLQWIIEGAQRTIQQNYRLTTPAAVEKA 120 Query: 683 KEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNL 742 D ++++ C++ + ++S L + Y EY + Y R ST L Sbjct: 121 VNAYHADNDWLGHFLNENCELDPSYEQKSGDLYQKYREYCQGIGEYIR---STTDFYTAL 177 Query: 743 KQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFES 777 K GF K+ + R IKGL+LK + Sbjct: 178 KNAGFQRQHKQ--------NGRFIKGLRLKVEADE 204 >gi|255263132|ref|ZP_05342474.1| conserved hypothetical protein [Thalassiobium sp. R2A62] gi|255105467|gb|EET48141.1| conserved hypothetical protein [Thalassiobium sp. R2A62] Length = 295 Score = 203 bits (516), Expect = 1e-49, Method: Composition-based stats. Identities = 52/291 (17%), Positives = 111/291 (38%), Gaps = 24/291 (8%) Query: 489 CVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGK 548 +G L+ + + F+ + G G +GKS + +++ G + V + ++ Sbjct: 26 LMGYTLMSHARHELFVMLIGPGANGKSVFLAILEGLVGEKNVAGVQPANFSDK------- 78 Query: 549 ANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFI 608 L I++E + + I A++K +T G+ T + + + T + Sbjct: 79 --FQRAHLHKKLANIVTELKQGEMIADAELKGITSGEPSTVEHKHRDPFV-LRPFSTCWF 135 Query: 609 VPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDAS-FAQKLETKYTLEAKKWFLKGVKAYI 667 N R+ DA +RR +++ F++ + + L + + Sbjct: 136 GTNYMPRTRDFSDALFRRAVILQFNRTFTKEEQDPLLKDKLLTELPGILNLALDAYDSAL 195 Query: 668 SKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELN 727 P AK+E R D ++DD C + ++ + ++Y + + N Sbjct: 196 VS--AFTQPGSTETAKQEWRLEADQVAQFVDDVCKRDPDACSKASKVFEAYLNWAQ--GN 251 Query: 728 YDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESV 778 ++ +S R + L + GF + K+ R + GL++ PA SV Sbjct: 252 GIKQTMSQRGLRDRLTRLGFG--------HRRDKTARYVTGLRV-PARVSV 293 >gi|183600772|ref|ZP_02962265.1| hypothetical protein PROSTU_04371 [Providencia stuartii ATCC 25827] gi|188019677|gb|EDU57717.1| hypothetical protein PROSTU_04371 [Providencia stuartii ATCC 25827] Length = 209 Score = 202 bits (513), Expect = 2e-49, Method: Composition-based stats. Identities = 58/212 (27%), Positives = 96/212 (45%), Gaps = 7/212 (3%) Query: 509 VGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN 568 G +GKST + +I+ G+ +M +G N SL +L+G R+V+ +E Sbjct: 2 AGSNGKSTFIQIIQSLMGSYATQINSDVLMMNK---NSGGPNASLAKLLGKRLVVANELP 58 Query: 569 ENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYI 628 EN ++ IK MTGGD + AR YG E + F+ I+ N + + WRR Sbjct: 59 ENGRLDDTLIKSMTGGDIIVARQVYGKHELEFYSQFSLVIIGNHKPAIYDMSHGMWRRMC 118 Query: 629 VIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEE 686 +IPF D KL W L GV+A+ ++GL +P + A +E Sbjct: 119 LIPFAANFTAAQIDPELPVKLSR-EMQGILNWALAGVQAWHTEGLKRSLPAAVIAANDEY 177 Query: 687 RQGTDTYQAWIDDCCDIGENLWEESHSLAKSY 718 RQ +D ++ + C + + + + L ++ Sbjct: 178 RQESDLIGEFL-EGCRLEPDAYTAASDLYSAF 208 >gi|75760988|ref|ZP_00740993.1| DNA primase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74491531|gb|EAO54742.1| DNA primase [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 545 Score = 202 bits (513), Expect = 2e-49, Method: Composition-based stats. Identities = 51/418 (12%), Positives = 138/418 (33%), Gaps = 34/418 (8%) Query: 355 IMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSI 414 I + ++ + ++ ++K + ++ + + Sbjct: 152 INEHHICKITNILHIYKDGVYSDKQEDIEEAMIKHIPALKRMQRQETLAYLQLKAKHKNF 211 Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVS 474 S ++ ++G+ +LET Q T E+ ++ + ++ Sbjct: 212 ASTK---------YVVVKNGVFNLETWQLEDFTPEIITRNKIPVAYIPDAYYKVTDKTLN 262 Query: 475 GY-FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533 + + +G L N+ + G G +GKS+ + +I+ G + + Sbjct: 263 KIAVNDKTIRSILEEILGYILFRRNEFAATFILTGNGSNGKSSYLKIIRQLVGEENASSL 322 Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593 + +++ Q L G I + + ++ K+++ G+ + Sbjct: 323 DLNELDQ---------RFKTAELFGKLANIGDDIGKGYIKESSVFKKLSTGETLNVERKG 373 Query: 594 GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR----DASFAQKLET 649 + + + N+ + + D RR ++PF D KL + Sbjct: 374 KDPF-DFTNYAKLIFSANEMPRINDFTDGLGRRLQIVPFKAKFTPEGEDYDPFITDKLLS 432 Query: 650 KYTLE-AKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLW 708 +++ LK +K + + + + + ++ + ++++ EN+ Sbjct: 433 DESMQYILILALKSLKRLLEEK-KFTKSKAVEEELVKYQEENNPIISFVN-----NENIE 486 Query: 709 EESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRII 766 E + Y +Y+ + + +S + + Q G K + + K+KRI Sbjct: 487 LERSVVGDVYLQYKVYCVENGFQSVSNINFSKQISQL---FGYKSHVQKVDGKNKRIF 541 >gi|168057313|ref|XP_001780660.1| predicted protein [Physcomitrella patens subsp. patens] gi|162667928|gb|EDQ54546.1| predicted protein [Physcomitrella patens subsp. patens] Length = 585 Score = 202 bits (513), Expect = 2e-49, Method: Composition-based stats. Identities = 78/416 (18%), Positives = 149/416 (35%), Gaps = 45/416 (10%) Query: 319 YKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNK 378 Y D Y D + S + + + + + Sbjct: 169 YDDKFVCSNFDKITIYFFDTKRWALKSSKASMMREILTGMYRFIADVCESY---MKTIEP 225 Query: 379 NSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDL 438 K F +D RR+ + + +LLDS +G + G+ D Sbjct: 226 AIKIIDFIQLSDNRRKMMYTCAGM----------LYKEGFEELLDSRRNVIGMKGGVYDF 275 Query: 439 ETGQKVKPTKELYITKSTGTPFVEGEPS----QEFLDLVSGYFESEEVMDYFTRCVGMAL 494 + + + YIT ST PFV + + E L+L++ F +E++ YF R + L Sbjct: 276 IEDRFRRMESDDYITLSTRIPFVPLDYNSEATNEVLNLLAKVFPNEDIRRYFMRFISSCL 335 Query: 495 LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLI 554 G N + F G G +GK+ +++L++ AFG+ I S +M R ++ A L Sbjct: 336 EGQNANKIFSIWSGSGDNGKTVMVSLVEGAFGDY-TIKMPTSLLMGKR-VQSSAATLELA 393 Query: 555 RLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHL 614 L I ++ E +E D++N +K++TG D + R Y P + ++ N+ Sbjct: 394 MLKERLIALVQEPDEGDKLNLGIMKELTGNDSLYIRGLYEEGTI-IPQTTKFVLIANRIP 452 Query: 615 FVRNPDDAWWRRYIVIPFDKPIAN------RDASFAQKLETKYTLEAKKWFLKGVKAYIS 668 ++ I + +D +F+ K+ + ++ K Y++ Sbjct: 453 Q----------------MNRTIHDLLTTHLKDINFSNKIPL-LAPVFMRLVIEEYKQYLT 495 Query: 669 KGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQ 724 GL + P E D + ++ + L +Y + + Sbjct: 496 YGL--EEPNEVKDCIETFHVSNDIFGQFLSANVEKNSKSIVAIKELYDTYKYWSKD 549 >gi|228904529|ref|ZP_04068612.1| Phage / plasmid primase, P4 [Bacillus thuringiensis IBL 4222] gi|228855093|gb|EEM99669.1| Phage / plasmid primase, P4 [Bacillus thuringiensis IBL 4222] Length = 624 Score = 202 bits (513), Expect = 2e-49, Method: Composition-based stats. Identities = 51/418 (12%), Positives = 138/418 (33%), Gaps = 34/418 (8%) Query: 355 IMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSI 414 I + ++ + ++ ++K + ++ + + Sbjct: 231 INEHHICKITNILHIYKDGVYSDKQEDIEEAMIKHIPALKRMQRQETLAYLQLKAKHKNF 290 Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVS 474 S ++ ++G+ +LET Q T E+ ++ + ++ Sbjct: 291 ASTK---------YVVVKNGVFNLETWQLEDFTPEIITRNKIPVAYIPDAYYKVTDKTLN 341 Query: 475 GY-FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533 + + +G L N+ + G G +GKS+ + +I+ G + + Sbjct: 342 KIAVNDKTIRSILEEILGYILFRRNEFAATFILTGNGSNGKSSYLKIIRQLVGEENASSL 401 Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593 + +++ Q L G I + + ++ K+++ G+ + Sbjct: 402 DLNELDQ---------RFKTAELFGKLANIGDDIGKGYIKESSVFKKLSTGETLNVERKG 452 Query: 594 GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR----DASFAQKLET 649 + + + N+ + + D RR ++PF D KL + Sbjct: 453 KDPF-DFTNYAKLIFSANEMPRINDFTDGLGRRLQIVPFKAKFTPEGEDYDPFITDKLLS 511 Query: 650 KYTLE-AKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLW 708 +++ LK +K + + + + + ++ + ++++ EN+ Sbjct: 512 DESMQYILILALKSLKRLLEEK-KFTKSKAVEEELVKYQEENNPIISFVN-----NENIE 565 Query: 709 EESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRII 766 E + Y +Y+ + + +S + + Q G K + + K+KRI Sbjct: 566 LERSVVGDVYLQYKVYCVENGFQSVSNINFSKQISQL---FGYKSHVQKVDGKNKRIF 620 >gi|167462196|ref|ZP_02327285.1| phage / plasmid primase, P4 family protein [Paenibacillus larvae subsp. larvae BRL-230010] Length = 582 Score = 202 bits (513), Expect = 2e-49, Method: Composition-based stats. Identities = 55/344 (15%), Positives = 126/344 (36%), Gaps = 21/344 (6%) Query: 388 NTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSS-RFLGEQDGILDLETGQKVKP 446 + ++ + A+ E + + + ++S+ + ++GI +LE + Sbjct: 253 KQQDVESAMIQHLPQLTAAKRKETTAYLELIVEKMNSAPVNLIALENGIYNLEDDTLDEF 312 Query: 447 TKELYITKSTGTPFVEGEPSQEFLDLVSGY-FESEEVMDYFTRCVGMALLGGNKAQRFIH 505 + ++ I + + ++ E+ +G LL N+ + Sbjct: 313 SPDIIIKNKIPVTYDPDVYDEATDKVLDKISCHDAELRALLEEMIGYLLLRRNELGKCFI 372 Query: 506 IRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIIS 565 + G G +GKSTL++++K G + + +I + G + Sbjct: 373 LTGSGSNGKSTLLDMLKNFLGPENYSSLSLDEI---------GHRFKTAEVFGKLANLGD 423 Query: 566 ETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625 + + N A K++ G+ + + + E N+ + + D R Sbjct: 424 DISSQYIDNNAVFKKLVTGETVNVERKGKDPF-EFNNYAKLIFSANQLPRINDTTDGLMR 482 Query: 626 RYIVIPFDKPIA----NRDASFAQKLETKYTLE-AKKWFLKGVKAYISKGLDVDIPEVCL 680 R I+IPF+ + + D KL T ++ + LKG+K +S +P++ Sbjct: 483 RLIIIPFNAKFSSADADFDPFIKDKLLTDNAMKYLLQIALKGLKRVLSNK-RFTMPDIIK 541 Query: 681 KAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQ 724 + E + + A+ID+ + E + + SYS + + Sbjct: 542 RELAEYEKMNNPVMAFIDEG---RKVENETTKEVYLSYSAWCYE 582 >gi|167764655|ref|ZP_02436776.1| hypothetical protein BACSTE_03045 [Bacteroides stercoris ATCC 43183] gi|167697324|gb|EDS13903.1| hypothetical protein BACSTE_03045 [Bacteroides stercoris ATCC 43183] Length = 480 Score = 202 bits (513), Expect = 2e-49, Method: Composition-based stats. Identities = 58/384 (15%), Positives = 128/384 (33%), Gaps = 25/384 (6%) Query: 380 SKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITS-DLLDSSSRFLGEQDGILDL 438 + + + E +K + L + + ++ + +G + Sbjct: 75 KEITQLLTTVANLGEIHEYKAKHHRFGEELYKQFRSVVKDMETQNTDVVKINCDNGTVVF 134 Query: 439 ETG--QKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE-SEEVMDYFTRCVGMALL 495 + K + + EF +++ +++ + Sbjct: 135 GANFVELRPFDKRDCFFYKLNYSYKPDATAPEFQRVLNEALPLDGQMI--LQEYIASIFF 192 Query: 496 GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIR 555 Q+ + + G GG GKS ++N+I A G V+ + + Sbjct: 193 PRFNHQKALLLYGHGGEGKSLIINIISAALGRDNVVERSVESLCAEESRT-------VAD 245 Query: 556 LMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLF 615 L + I + N + K++ + MTA+ Y + Y + N+ Sbjct: 246 LENKLLNICY--EMGSKFNISNFKRLVSKEPMTAKRLYMDPY-TIYDYASLLFACNELPK 302 Query: 616 VRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDV 673 +A++RR +++PF I +D + +++ W +KG + +++G Sbjct: 303 NIEYTNAYFRRLMILPFLNQIPVEKQDRTLGERVIQNELSGILNWIIKGAERLLAQG-CF 361 Query: 674 DIPEVCLKAKEEERQGTDTYQAWIDDCC-DIGENLWE--ESHSLAKSYSEYREQELNYDR 730 E+ +A E R D+ ++IDD + + L + Y Y + + Sbjct: 362 SKSELVDRALAEYRVDADSVASFIDDSNYEKSTENKDCMALKYLFEGYMNYCSESNCHAC 421 Query: 731 KRISTRTVTLNLKQKGFIGGIKRE 754 S +T + LK GF K + Sbjct: 422 ---SRKTFSSRLKGLGFQLVRKSQ 442 >gi|291548659|emb|CBL24921.1| phage/plasmid primase, P4 family, C-terminal domain [Ruminococcus torques L2-14] Length = 625 Score = 202 bits (512), Expect = 3e-49, Method: Composition-based stats. Identities = 52/370 (14%), Positives = 124/370 (33%), Gaps = 23/370 (6%) Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTP 459 K + + I + S + + +GI DL TG+ + ++ IT Sbjct: 267 PNLKKMQRREVLDYMELIVDEKEQSDANLIAFNNGIYDLVTGELKPFSTDIVITNKIPWD 326 Query: 460 FVEGEPSQEFLDLVSGY-FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLM 518 + S+ ++ + C+G N+ + + G +GKST + Sbjct: 327 YKPDAYSELADSTLNKLACGDAAIRALLEECIGYCFYRRNELGKAFILTGDKSNGKSTFL 386 Query: 519 NLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN--DEINAA 576 + +K G++ + + ++ + + G I + ++ + Sbjct: 387 DCVKAILGDRNISALDLKEL---------GDRFNTSMMFGKLANIGDDIGDDFLQGSQVS 437 Query: 577 KIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI 636 K++ G+ + A + + E N +++ A RR ++IPF+ Sbjct: 438 VFKKIVTGNRIKAERKGQDPF-EFNPFIKLLFSANDIPRMKDKTGAVLRRLVIIPFNATF 496 Query: 637 ANRDASFA--QKLETKYTLEAKKWF---LKGVKAYISKGLDVDIPEVCLKAKEEERQGTD 691 + D + K E + ++G+K + + +E Q + Sbjct: 497 SKDDPDYRPFIKYELTQQDSIEYLIRLGVEGLKRVVINN-GFSKSDKVQNQLDEYEQENN 555 Query: 692 TYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGI 751 A+I+D + E + + K Y + + +S + + ++ I Sbjct: 556 PILAFIND-TGVDMIENEPTADVYKRYQVFCADN---AMQPMSNIVFSKQINKRLGFRVI 611 Query: 752 KREKIEKEWK 761 +++ K K Sbjct: 612 QKKVNNKNCK 621 >gi|289167298|ref|YP_003445565.1| hypothetical protein smi_0425 [Streptococcus mitis B6] gi|288906863|emb|CBJ21697.1| conserved hypothetical protein [Streptococcus mitis B6] Length = 534 Score = 201 bits (511), Expect = 3e-49, Method: Composition-based stats. Identities = 59/342 (17%), Positives = 129/342 (37%), Gaps = 22/342 (6%) Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ-----EFLDLVSGYF-ES 479 RF+ ++GI D + T E + GT + S + + Sbjct: 173 RRFILVKNGIYDKKEKLLRPFTHEFVAFSTIGTEYDHFAKSPVIDGWDIDSWLLDLMSGD 232 Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539 EE+++ + + +L G ++ I G G GK T+ LI G + V + + + Sbjct: 233 EELVELIWQVISASLNGNYSYRKSIWFVGEGNDGKGTVQQLITNLVGMRNVASLKLNQFS 292 Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA-AKIKQMTGGDCMTARLNYGNTYS 598 + +L + G ++I + ++ + + G+ + Y+ Sbjct: 293 E---------RFALSMIEGKTVIIGDDVQAGIYVDESSNFNSVVTGEPVLVEEKNKQPYT 343 Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKW 658 T N+ +N + +RR+ ++PF K ++++ ++A K + Y E ++ Sbjct: 344 TV-FKKTVIQSTNELPRFKNKTNGTYRRFAIVPFKKSFSSKEDNWAIKDDYIYREEVLEY 402 Query: 659 FLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSY 718 LK P+ ++A E+ ++ DT +A++++ D E+ S L Y Sbjct: 403 VLKKALEISFD--RFIEPQASIEALEDFKESNDTVKAFVNEWFDKFESTRLPSRFLWWLY 460 Query: 719 SEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEW 760 E+ E +++ R L + +K++ Sbjct: 461 QEWCRDEG---VTKLTKRKFETQLAKNIPENWVKKKMRPSGK 499 >gi|225419963|ref|ZP_03762266.1| hypothetical protein CLOSTASPAR_06304 [Clostridium asparagiforme DSM 15981] gi|225041385|gb|EEG51631.1| hypothetical protein CLOSTASPAR_06304 [Clostridium asparagiforme DSM 15981] Length = 629 Score = 201 bits (511), Expect = 3e-49, Method: Composition-based stats. Identities = 57/369 (15%), Positives = 123/369 (33%), Gaps = 28/369 (7%) Query: 408 SLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ 467 + A I + + + +G+ ++ V T E IT + S+ Sbjct: 276 EVLAYLDILIRENTQAEDANMIAFANGLYNIVDDSFVAFTPEHIITNKIRWDYNPEAYSE 335 Query: 468 EFLDLVSGY-FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFG 526 ++ + + +G N+ + + G +GKST +++++ G Sbjct: 336 LADKTLNKIACDDPAIRALLEEAIGYCFYRRNELGKAFILTGDKSNGKSTFLSMVQTLLG 395 Query: 527 NQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDC 586 + + + + ++ + G I + + N A K++ G+ Sbjct: 396 EENIASLDLKEL---------GDRFKTAEMFGKLANIGDDIGDEFIANPAIFKKLVTGER 446 Query: 587 MTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQK 646 ++A N + E N +++ A RR +IPFD + D F Sbjct: 447 VSAERKGQNPF-EFNNYSKLLFSANNIPRIKDKTGAVQRRLTIIPFDARFSADDPDFNPY 505 Query: 647 ----LETKYTLEAK-KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCC 701 L+T +E + G+K ++ KA +E + + + +C Sbjct: 506 IKHLLKTDEVMEYLINLGIVGLKRVLTN-RAFTASAKVQKAMDEYEENNNPILGFFKEC- 563 Query: 702 DIGENLW---EESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEK 758 E+ E ++ + K Y EY + +S + + + I +K Sbjct: 564 -EDEDFQIENEPTNKVYKRYQEYCLAN---SLQPMSNIEFSKQVNR---ILNMKVVNKTI 616 Query: 759 EWKSKRIIK 767 + K RI Sbjct: 617 QNKKYRIFV 625 >gi|329955099|ref|ZP_08296080.1| phage/plasmid primase, P4 family domain protein [Bacteroides clarus YIT 12056] gi|328526389|gb|EGF53404.1| phage/plasmid primase, P4 family domain protein [Bacteroides clarus YIT 12056] Length = 400 Score = 201 bits (511), Expect = 3e-49, Method: Composition-based stats. Identities = 49/327 (14%), Positives = 118/327 (36%), Gaps = 12/327 (3%) Query: 363 KEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLL 422 + V+ + + + + F + N + + + L +++ + Sbjct: 65 DQHVYSYTGKYWVSIDDFDLKIFLREALGKMTNDMVEASQREVVEGLFKQFPYTVMGLAV 124 Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEV 482 + + +G L+L+TG+ + Y P+ Q F+ + ++ Sbjct: 125 EQDKEKINFLNGTLNLKTGRLEQHLYSDYFRYVLPYPYNPNATCQMFMKYLDRVLPDKDT 184 Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542 +G K ++ + + G G +GKS +++++ G + + + SD+ Sbjct: 185 QKVLAEYIGWIFTPL-KLEKCLFLYGSGKNGKSVFVDIVEALLGKENISHESLSDMCGEN 243 Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602 + L G + S+ N + K++ G+ ++ R Y + + Sbjct: 244 GDRS------RANLSGKLLNTCSDVAPNA-FSGDIFKRIASGEPISTRQLYKD-VATLTD 295 Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAKKWFL 660 N+ + + ++RR++++PF I D A+K+ + W L Sbjct: 296 YAKMLFCLNELPKTNDKSNGYFRRFLIVPFKVQIPKPEVDPKLAEKIVSTELPGIMNWVL 355 Query: 661 KGVKAYISKGLDVDIPEVCLKAKEEER 687 +G + I++ +C K EE R Sbjct: 356 EGRERLITQ-SGFTESSLCQKQLEEYR 381 >gi|239630759|ref|ZP_04673790.1| DNA primase [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239527042|gb|EEQ66043.1| DNA primase [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 463 Score = 201 bits (510), Expect = 5e-49, Method: Composition-based stats. Identities = 63/338 (18%), Positives = 120/338 (35%), Gaps = 28/338 (8%) Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFL---DLVSGYFESE 480 + + +G +L T E YI + P+ S++ L D ++ Sbjct: 123 ADPNLITFTNGTYNLVTDTLQPHRPEDYILQ--NHPYDLKMKSEKDLKTVDWLAHLTGDP 180 Query: 481 EVMDYFTRCVGMALLGGNK-AQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539 ++ +G Q ++G G +GK+T + +K G + V N D+ Sbjct: 181 ISANFLMEFIGYCFYHRYSPFQALTILQGNGQNGKTTFIEFVKQILGKRNVSNVALQDLA 240 Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599 G +L + ++ +++ ++K +TG D A + +S Sbjct: 241 NKDNRFTGS------QLYQKEANMFADLDDSFLKTTGQLKALTGDDTTFAEFKGKDGFS- 293 Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETK----YTLEA 655 NK + + RR V+PF + I D +F ++ + Sbjct: 294 FMNFAKLIFSANKLPKFSDFTSGFIRRLYVVPFPQKI---DNNFKKEFDLNQIYDEIPAF 350 Query: 656 KKWFLKGVK-AYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLW--EESH 712 L+ K A GL + AKE + +D +I+D C I + + S Sbjct: 351 SYQCLRAFKCAIDRDGL--SKSPSMIAAKESWLRDSDNIARFIEDRCRIESDTKGGDSSR 408 Query: 713 SLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGG 750 ++ K+Y +Y +E + K S T L+ +G Sbjct: 409 NIYKAYQDYCWEE---NIKPFSQPEFTRRLEAQGIPRK 443 >gi|218131558|ref|ZP_03460362.1| hypothetical protein BACEGG_03178 [Bacteroides eggerthii DSM 20697] gi|217986490|gb|EEC52827.1| hypothetical protein BACEGG_03178 [Bacteroides eggerthii DSM 20697] Length = 531 Score = 201 bits (510), Expect = 5e-49, Method: Composition-based stats. Identities = 60/435 (13%), Positives = 139/435 (31%), Gaps = 41/435 (9%) Query: 342 YIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSK 401 YI++ K L +E N ++ R N Sbjct: 122 YIYTGCYWK-------------NITRPLLKEFLAVAANKAGFNYYDIRLSRNLERLYNQF 168 Query: 402 AKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQK--VKPTKELYITKSTGTP 459 + + ++G + ++ K + Sbjct: 169 VALCTLVPDLNEK---------KDEVKINLKNGTFVISKDKQELRDFDKRDFFKYQLPFE 219 Query: 460 FVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMN 519 + EF ++ +E +G K ++ + ++G G +GKS + Sbjct: 220 YNPEATCDEFKAFLNEVLPEKESQMILAEYLGYIFTQNLKLEKCLILKGEGSNGKSVIFE 279 Query: 520 LIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIK 579 +++ G + S++ +L G+ ++ S IN K Sbjct: 280 IVQALLGEHNTCSYTISNLCNENG-------YFRAQL-GNYLLNYSSELGGKNINPDLFK 331 Query: 580 QMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN- 638 ++ + + AR YG+ + NK A+ RR+I++ F+ I + Sbjct: 332 KLISNEPIDARSPYGHPFI-LRHYGKFMFNMNKFPNNIEFTHAYLRRFIILNFEVIIPDE 390 Query: 639 -RDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWI 697 +D A+++ +K W L+G+ + + + EE R +D+ ++ Sbjct: 391 EQDKHLAERIISKELSGIFNWVLEGLGRLLKQ-QQFTESPKAKELLEEMRFESDSVAQFL 449 Query: 698 DDCC---DIGENLWEESHSLAKSYSEYR--EQELNYDRKRISTRTVTLNLKQKGFIGGIK 752 ++ N + Y Y ++ + +K STR +L + + GG Sbjct: 450 EEKQYLPSTSGNDKILLKRFREEYQAYCHIKKLIPVGQKEFSTRIKSLKFEIQKGGGGNN 509 Query: 753 REKIEKEWKSKRIIK 767 +++ +++ ++ Sbjct: 510 YIFVKRNDIARQFLE 524 >gi|227544668|ref|ZP_03974717.1| possible ATPase [Lactobacillus reuteri CF48-3A] gi|227185350|gb|EEI65421.1| possible ATPase [Lactobacillus reuteri CF48-3A] Length = 207 Score = 200 bits (509), Expect = 7e-49, Method: Composition-based stats. Identities = 57/215 (26%), Positives = 90/215 (41%), Gaps = 14/215 (6%) Query: 565 SETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWW 624 +E E +N + +KQ+ D + A Y +S S T + N V D+ W Sbjct: 2 AELEEGKRLNTSIVKQLCSTDEIYAEKKYMKPFS-FTPSHTIVLYTNYLPHVGGNDEGIW 60 Query: 625 RRYIVIPFDKPIANRD--ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKA 682 RR IVIPF IA R+ ++AQ L K +W ++G + I + + P KA Sbjct: 61 RRLIVIPFKATIAKRNDIKNYAQYLTEKAGPAVLQWIIEGAQRTIQQNYRLTTPAAVEKA 120 Query: 683 KEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNL 742 D ++++ C++ ++S L + Y EY + Y R ST L Sbjct: 121 VNAYHADNDWLGHFLNEKCELNPEYEQKSGDLYQKYREYCQGIGEYIR---STTDFYTAL 177 Query: 743 KQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFES 777 K GF K+ + R I+GL+LK + Sbjct: 178 KNAGFQRQHKQ--------NGRFIEGLRLKVDADE 204 >gi|323485263|ref|ZP_08090613.1| phage/plasmid primase [Clostridium symbiosum WAL-14163] gi|323401441|gb|EGA93789.1| phage/plasmid primase [Clostridium symbiosum WAL-14163] Length = 625 Score = 200 bits (508), Expect = 7e-49, Method: Composition-based stats. Identities = 52/370 (14%), Positives = 125/370 (33%), Gaps = 23/370 (6%) Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTP 459 K + + I + S + + +G+ DL TG+ + ++ IT Sbjct: 267 PNLKKMQRREVLDYMELIVDEKEQSDANLIAFNNGVYDLVTGELKPFSTDIVITNKIPWD 326 Query: 460 FVEGEPSQEFLDLVSGY-FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLM 518 + S+ ++ + C+G N+ + + G +GKST + Sbjct: 327 YKPDAYSELADSTLNKLACGDAAIRALLEECIGYCFYRRNELGKAFILTGDKSNGKSTFL 386 Query: 519 NLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN--DEINAA 576 + +K G++ + + ++ + + G I + ++ + Sbjct: 387 DCVKAILGDRNISALDLKEL---------GDRFNTSMMFGKLANIGDDIGDDFLQGSQVS 437 Query: 577 KIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI 636 K++ G+ + A + + E N +++ A RR ++IPF+ Sbjct: 438 VFKKIVTGNRIKAERKGQDPF-EFNPFIKLLFSANDIPRMKDKTGAVLRRLVIIPFNATF 496 Query: 637 ----ANRDASFAQKLETKYTLEAKKWF-LKGVKAYISKGLDVDIPEVCLKAKEEERQGTD 691 + D KL + ++E ++G+K I + E + + Sbjct: 497 SKDSPDYDPFIKYKLIQQESVEYFIRLGVEGLKRIIIND-GFTKSDKVQNQLTEYEEENN 555 Query: 692 TYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGI 751 A+I+D + E + + K Y + + +S + + ++ I Sbjct: 556 PILAFIND-TGVDMIENEPTADVYKRYQVFCADN---AMQPMSNIVFSKQINKRLGFRVI 611 Query: 752 KREKIEKEWK 761 +++ K K Sbjct: 612 QKKVNNKNCK 621 >gi|48696649|ref|YP_024428.1| integrase [Vibrio phage VP2] gi|40950047|gb|AAR97638.1| integrase [Vibrio phage VP2] Length = 762 Score = 200 bits (507), Expect = 1e-48, Method: Composition-based stats. Identities = 126/800 (15%), Positives = 235/800 (29%), Gaps = 130/800 (16%) Query: 10 AKQAIHNGFKLIPLRLGDKR-PQRLGK--WEEQLLSSEKIDKLPA-------CGFGFVCG 59 A+ I NG +IP+ K P ++ ++ + ID G CG Sbjct: 25 ARFYIKNGLYVIPVMPNGKSLPSKMYNIGYQHASKNKNTIDSWFGVGGRFRGFNLGIACG 84 Query: 60 VGEQPLYAFDIDSKDEKTANTFKDT--FEILHGT--PIVRIGQKPKILIPF---RMNKEG 112 ++A DID +D K F + E +G ++ F + K Sbjct: 85 KR-GGVFAVDIDVEDSKGNRGFDNLAILEEKYGKLVAPIQETPTGGRHYLFQWDKYAKSS 143 Query: 113 IKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEY 172 K T+G D C + VA+ EYTW+ P + D P + + + Sbjct: 144 SGKIAKAIDTRGG-DEDSCKSHIVAWPSVRDEG-EYTWSMP----TLGDVPEIPKWISDA 197 Query: 173 LFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFY-------NGS 225 L +P N + + ++ + Sbjct: 198 L-----------------GVPWTGNMNRGSEEIDEDDLETRYTPRQIWRMLEYIDPDELE 240 Query: 226 HDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRS 285 +DEW+ V+ AVH + G E+A RWS++G+ Y + + +W +FD Sbjct: 241 YDEWLAVLQAVHSQYPDDQ-GYELADRWSQRGARYKPDEVSIRWQSFDEHGTIRVG---- 295 Query: 286 TFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWS 345 T +G + ++ + Y K + K ++ N + Sbjct: 296 TLIYFAQKNGFKPNTEPKGAEEPSEDTDSVVAEYNKKFGVVMVGNKLRILMEQFNPDPFQ 355 Query: 346 LTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKST 405 S+ +F M D+ + + +K + WF + RR+ V + Sbjct: 356 DNF--KLMSVQDFKALMANDIVWYGD-SKGKSKPVQKSDIWFVNEKRREFVNGLTFMPDK 412 Query: 406 AQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGE- 464 + ++ G + E Sbjct: 413 PREVDGCFNVWE---------------------------------------GWRYKEVAG 433 Query: 465 PSQEFLDLVSGYFESEEVMDYFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLMNLIKY 523 F V S+E ++ AL N + ++G+ G+GK T+ N+ Sbjct: 434 DWSLFKKHVKAVVGSQEHYEWLMDWFADALQDPMNPKGCAVVMKGIEGTGKGTIANVFGE 493 Query: 524 AFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN-ENDEINAAKIKQMT 582 FG Y + ++ L + +V E ++ A +K + Sbjct: 494 LFGQHYKHIIQEEQLIGKFNG----------HLEEALLVFADEVTYGGNKKVAGTLKGLV 543 Query: 583 GGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDAS 642 + + I N+ F+ + RR+ VI A+ + Sbjct: 544 TEKKLMIERKGLDAT-PYRNCLRLMIASNEDWFIPAGPHS--RRWFVIDVPDSFASDKSY 600 Query: 643 FAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCD 702 F + + + I L L + TD+ W D + Sbjct: 601 FDAIWKQMENGGYEAMMYELRNREIKSDLRKAPETKLLMEQRARYTTTDSVVEWWADKVE 660 Query: 703 IG-------ENL--------WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGF 747 G E + + SL Y E+ + KR++ + ++ F Sbjct: 661 AGVIGVTGYEEFGDEVDWPQFVDKASLYVDYQEWCQANGA---KRLTKPAFYAKV-ERDF 716 Query: 748 IGGIKREKIEKEWKSKRIIK 767 R KR+ + Sbjct: 717 KFVDCRPANPHGGPRKRMFE 736 >gi|281354915|ref|ZP_06241409.1| phage/plasmid primase, P4 family [Victivallis vadensis ATCC BAA-548] gi|281317795|gb|EFB01815.1| phage/plasmid primase, P4 family [Victivallis vadensis ATCC BAA-548] Length = 474 Score = 199 bits (505), Expect = 2e-48, Method: Composition-based stats. Identities = 88/462 (19%), Positives = 170/462 (36%), Gaps = 50/462 (10%) Query: 325 LYTADTKAWYKKDKNNVYIWS--LTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKS 382 LY + KD+ +++ L + +S L + + + Sbjct: 46 LYCQARNLLFDKDEKKFFLYDQSTGLWQEQSSNAQ-LCDVAQLIMQYV------------ 92 Query: 383 PRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETG- 441 P + R + S K A+ A + + +GIL+ +G Sbjct: 93 PNDYIRLSTSRMISQIQSFIKGLAEKRGAFQ---------NKKKNVIHVANGILEFISGG 143 Query: 442 --QKVKPTKELYITKSTGTPFVEGEPSQEFLD-LVSGYFESEEVMDYFTRCVGMALLGGN 498 + P E Y + + +FLD L+ EE + + G+ LLG N Sbjct: 144 GWELRNPQPEDYSRNRSEIIYNPESQCPQFLDQLLGEAMP-EEDISLLQQYAGLVLLGYN 202 Query: 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMG 558 +Q+ + + G G GKSTL+N+++ G + Q + R +G Sbjct: 203 LSQKVLLLTGSAGGGKSTLVNILEGLIGRHNCCELRTEHLDQ---------RFEIARFVG 253 Query: 559 SRIVIISETNENDEINA---AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLF 615 ++ + ++ +N AKIK +TG D +TA +T + +F I N L Sbjct: 254 KTLLTAKDV-KSSFLNTPGAAKIKALTGKDTLTADFKGVSTGVDVIGNFNVVITANTELH 312 Query: 616 V--RNPDDAWWRRYIVIPFDKPIANRD-ASFAQKLETKYTLEAKKWFLKGVKAYISKGLD 672 V +AW RR + I ++ P + A F +K+ T+ W L+G + + +G Sbjct: 313 VALDGDKEAWRRRLLWIKYELPPTSTPIADFDEKILTEEGAGVLNWALEGARKLLVEGGK 372 Query: 673 VDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKR 732 + + + ++ +DT ++ C + L S L + Y + + Sbjct: 373 IRMTAKQTERVDKLLLESDTVGQFVHKCIVLSPGLNATSEELWSQFYHYCDYQGLT---P 429 Query: 733 ISTRTVTLNLKQKGFIGGIKRE--KIEKEWKSKRIIKGLKLK 772 S + + LK + +I + KR +G++++ Sbjct: 430 GSRKQFFIELKNAMLTKFHLSQSHRISRGNTLKRGYEGIRIR 471 >gi|254463719|ref|ZP_05077130.1| Primase C terminal 2 family [Rhodobacterales bacterium Y4I] gi|206684627|gb|EDZ45109.1| Primase C terminal 2 family [Rhodobacterales bacterium Y4I] Length = 890 Score = 199 bits (505), Expect = 2e-48, Method: Composition-based stats. Identities = 105/670 (15%), Positives = 192/670 (28%), Gaps = 82/670 (12%) Query: 13 AIHNGFKLIPL-------RLGDKRPQRLGKWEE--QLLSSEKIDKLPAC-----GFGFVC 58 + G++ +P+ + KRP + WE +I + G VC Sbjct: 40 LLRGGYRPVPVLGAHVAMKAAGKRPM-MKGWETVCASADETEITRWTKAQRNCTNTGLVC 98 Query: 59 GVGEQPLYAFDIDSKDEKTANTFKDTFEILHG-TPIVRIGQKPKILIPFRMNKEGIKKKK 117 G L DID D A+ + G +P+ RIG+ PKIL+ FR + K + Sbjct: 99 G----DLIGVDIDVLDRDHAHRLTFIATEMLGMSPLSRIGRAPKILLAFRTDAPFDKVQT 154 Query: 118 T----TESTQGHLDILGCGQYFVAYNIHPKTKKEYTW-TTPPHRFKVEDTPLLSEEDVEY 172 + + T +++L GQ FV + IHP TK Y W P + + P++S++ Sbjct: 155 SEFHMLDGTVARVEVLATGQQFVGFGIHPDTKAPYHWPECSPLDVSLHELPVVSQDRCAA 214 Query: 173 LFKFFQEITVPLV--KDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGS--HDE 228 + + + + + N +D+ Sbjct: 215 FISAAEGYFRKVGGQTTSDRREIDREGRKAAGLKQKEAPSRELIEEAVAHISNDELPYDD 274 Query: 229 WIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFT 288 WI V +A++ S G+++ WS + S D KWD+F T Sbjct: 275 WIKVGLALY--AALGSDGRDLWETWSAEASKNDPAYSAEKWDSFANVRSV-------TVG 325 Query: 289 SLFYHHGKLIPKGLLASRFS--DAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSL 346 +LF+ + + A R + + + V + Sbjct: 326 TLFWLARQNGWRAEQAQRMRPARPTRNPDDADEDAPDEDTRPAIRIYAGFLHETVDMAEG 385 Query: 347 TLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKS---------PRFWFNTDYRRQNVE 397 L + + + ++ + ++ + Sbjct: 386 ALMQAGLGYYQRGSMVVRPAMVPVAIADGRKIDAPRLVDVKAHHMAEAFTRAANWKRFDK 445 Query: 398 ENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDG--------ILDLETGQKVKP--- 446 K ST F + G + ILDL Sbjct: 446 REGKWLSTDCPHRIAETFLVREGQW-RLPVLTGIINCPTLRPDGSILDLPGYDAQTGLLF 504 Query: 447 TKELYITKSTGTPFVEGEPSQEFLDLVSGY---FE---SEEVMDYFTRCVGMALLGG--N 498 + +Q L + F + + AL+ Sbjct: 505 DPQDVHFPMLPRDPDR-ATAQRALAFLKDLISTFPFVTDAD-RSVALSGILTALIRRSLP 562 Query: 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMG 558 A G+GKS L++L A I Q + E + + G Sbjct: 563 TAPLHGFNAPTAGTGKSMLVDLASLI-----ATARPAPVIAQGKSEEEMEKRLGAALIAG 617 Query: 559 SRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRN 618 ++ I E + + Q + R+ + +E P++ F N + Sbjct: 618 DVLIAIDNCEE--PLGGELLCQTLTQTSLKVRILGKSVNAEVPSNAAVFATGNNLTLEGD 675 Query: 619 PDDAWWRRYI 628 RR + Sbjct: 676 MT----RRAV 681 >gi|168705299|ref|ZP_02737576.1| Phage/plasmid primase P4-like protein [Gemmata obscuriglobus UQM 2246] Length = 981 Score = 198 bits (504), Expect = 2e-48, Method: Composition-based stats. Identities = 55/356 (15%), Positives = 113/356 (31%), Gaps = 28/356 (7%) Query: 426 SRFLGEQDGILDLE------TGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-E 478 F+ +G++D+ T + + F FL + Sbjct: 536 REFVACANGLIDVAELFATGRATLHPATPLYFTPAAIPVAFDPAAECPTFLRFLDRVTEG 595 Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538 E G L + Q+F + G G +GKST + ++ G+ + + Sbjct: 596 DAERQSLLQEIAGYLLRFDTRFQQFFLLTGDGANGKSTFLAALRALIGDHNYASVPLEEF 655 Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598 +L +G + ++E E D++ AK+K GGD MT S Sbjct: 656 ---------GERFTLGATLGKLVNAVAEVGELDKVAEAKLKSFVGGDLMTFDRKNKAPVS 706 Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDA-----SFAQKLETKYTL 653 + + N + + WRRY ++PF I+ + + + Sbjct: 707 A-RPTARLLLSTNTPPRFADRTEGVWRRYQLVPFTAVISAEERVRGMSEPEWWVSSGELP 765 Query: 654 EAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHS 713 W L G+ C AK E R+ + ++ ++ + E Sbjct: 766 GVLNWALAGLLRLHRAN-GFTSSAACEAAKAEHRELCNPHRLFLGEHVRAQEGAALRCVE 824 Query: 714 LAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGL 769 L +Y E+ Q ++ +++ + + + + + + G+ Sbjct: 825 LFAAYVEWCRQRR---YLPLADGNFGAEVRK--VFRRVTKSRPRNGRERQNVYSGV 875 >gi|255693187|ref|ZP_05416862.1| putative primase [Bacteroides finegoldii DSM 17565] gi|260621080|gb|EEX43951.1| putative primase [Bacteroides finegoldii DSM 17565] Length = 400 Score = 198 bits (503), Expect = 3e-48, Method: Composition-based stats. Identities = 50/312 (16%), Positives = 112/312 (35%), Gaps = 12/312 (3%) Query: 378 KNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILD 437 + F R N + + + L +++ ++ + Q+G + Sbjct: 80 DDFDLKIFLREALGRMTNNMVEASQREVVEGLFKQFPYTVMGLAVEQDKEKINFQNGTFN 139 Query: 438 LETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGG 497 L+TG+ + Y P+ Q F+ + ++ +G Sbjct: 140 LKTGRLEQHLYLDYFRYVLPYPYNLNATCQMFMKYLDRVLPDKDAQKVLAEYIGWIFTPL 199 Query: 498 NKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLM 557 K ++ + + G G +GKS +++++ G + + + SD+ + L Sbjct: 200 -KLEKVLFLYGSGKNGKSVFVDIVEALLGKENISHESLSDMCGENGDRS------RANLS 252 Query: 558 GSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVR 617 G + S+ N + K++ G+ ++ R Y + + N+ Sbjct: 253 GKLLNTCSDVAPNA-FSGDIFKRIASGEPISTRQLYKD-VATLTDYAKMLFCLNELPRTN 310 Query: 618 NPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDI 675 + + ++RR++++PF I D A+K+ + W L+G K I++ Sbjct: 311 DKSNGYFRRFLIVPFKVQIPKSEVDPKLAEKIVSTELPGIMNWVLEGRKRLITQ-SGFTE 369 Query: 676 PEVCLKAKEEER 687 +C K EE R Sbjct: 370 SSLCQKQLEEYR 381 >gi|48696691|ref|YP_024985.1| putative integrase [Vibrio phage VP5] gi|40806154|gb|AAR92072.1| putative integrase [Vibrio phage VP5] Length = 762 Score = 198 bits (503), Expect = 3e-48, Method: Composition-based stats. Identities = 126/800 (15%), Positives = 234/800 (29%), Gaps = 130/800 (16%) Query: 10 AKQAIHNGFKLIPLRLGDKR-PQRLGK--WEEQLLSSEKIDKLPA-------CGFGFVCG 59 A+ I NG +IP+ K P ++ ++ + ID G CG Sbjct: 25 ARFYIKNGLYVIPVMPNGKSLPSKMYNIGYQHASKNKNTIDSWFGVGGRFRGFNLGIACG 84 Query: 60 VGEQPLYAFDIDSKDEKTANTFKDT--FEILHGT--PIVRIGQKPKILIPF---RMNKEG 112 ++A DID +D K F + E +G ++ F + K Sbjct: 85 KR-GGVFAVDIDVEDSKGNRGFDNLAILEEKYGKLVAPIQETPTGGRHYLFQWDKYAKSS 143 Query: 113 IKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEY 172 K T+G D C + VA+ EYTW+ P + D P + + + Sbjct: 144 SGKIAKAIDTRGG-DEDSCKSHIVAWPSVRDEG-EYTWSMP----TLGDVPEIPKWISDA 197 Query: 173 LFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFY-------NGS 225 L +P N + + ++ + Sbjct: 198 L-----------------GVPWTGNMNRGSEEIDEDDLETRYTPRQIWRMLEYIDPDELE 240 Query: 226 HDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRS 285 +DEW+ V+ AVH + G E+A RWS++G+ Y + + +W +FD Sbjct: 241 YDEWLAVLQAVHSQYPDDQ-GYELADRWSQRGARYKPDEVSIRWQSFDEHGTIRVG---- 295 Query: 286 TFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWS 345 T +G + ++ + Y K + K ++ N + Sbjct: 296 TLIYFAQKNGFKPNTEPKGAEEPSEDTDSVVAEYNKKFGVVMVGNKLRILMEQFNPDPFQ 355 Query: 346 LTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKST 405 S+ +F M D+ + + +K + WF + RR+ V + Sbjct: 356 DNF--KLMSVQDFKALMANDIVWYGD-SKGKSKPVQKSDIWFVNEKRREFVNGLTFMPDK 412 Query: 406 AQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGE- 464 + ++ G + E Sbjct: 413 PREVDGCFNVWE---------------------------------------GWRYKEVAG 433 Query: 465 PSQEFLDLVSGYFESEEVMDYFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLMNLIKY 523 F V S+E + AL N + ++G+ G+GK T+ N+ Sbjct: 434 DWSLFKKHVKAVVGSQEHYGWLMDWFADALQDPMNPKGCAVVMKGIEGTGKGTIANVFGE 493 Query: 524 AFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN-ENDEINAAKIKQMT 582 FG Y + ++ L + +V E ++ A +K + Sbjct: 494 LFGQHYKHIIQEEQLIGKFNG----------HLEEALLVFADEVTYGGNKKVAGTLKGLV 543 Query: 583 GGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDAS 642 + + I N+ F+ + RR+ VI A+ + Sbjct: 544 TEKKLMIERKGLDAT-PYRNCLRLMIASNEDWFIPAGPHS--RRWFVIDVPDSFASDKSY 600 Query: 643 FAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCD 702 F + + + I L L + TD+ W D + Sbjct: 601 FDAIWKQMENGGYEAMMYELRNREIKSDLRKAPETKLLMEQRARYTTTDSVVEWWADKVE 660 Query: 703 IG-------ENL--------WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGF 747 G E + + SL Y E+ + KR++ + ++ F Sbjct: 661 AGVIGVTGYEEFGDEVDWPQFVDKASLYVDYQEWCQANGA---KRLTKPAFYAKV-ERDF 716 Query: 748 IGGIKREKIEKEWKSKRIIK 767 R KR+ + Sbjct: 717 KFVDCRPANPHGGPRKRMFE 736 >gi|310639695|ref|YP_003944453.1| primase, putative [Paenibacillus polymyxa SC2] gi|309244645|gb|ADO54212.1| Primase, putative [Paenibacillus polymyxa SC2] Length = 554 Score = 197 bits (500), Expect = 6e-48, Method: Composition-based stats. Identities = 72/472 (15%), Positives = 149/472 (31%), Gaps = 36/472 (7%) Query: 322 GHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSK 381 +F + +YK + + S + ++ + ++ +S+ Sbjct: 92 ENFKVKDNNTRFYKTSSDRGNFVPRVEWLMLNSFEMISSADGISIYQTKQGYYKHHSDSE 151 Query: 382 SPRFWFNTDYRRQNVE-ENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLET 440 QN E K A L+ + L++ + + +DG+L+L Sbjct: 152 LAVLIRKNLTEDQNREVSRRKMDEVAYRLKTHPDLWRKFNDLNTDTNLINFRDGVLNLRE 211 Query: 441 GQKVKPTKELYITKSTGTPF----------VEGEPSQEFLDLVSGYF-ESEEVMDYFTRC 489 + + + T + S F ++ + + Sbjct: 212 RRMLPHDPKYCFTSFIDADCKVIPQQNTNNRDYSYSSVFECFLTDCTEGDKAKQASLQQM 271 Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549 VG + A++ + G +GKS ++L++ G ++ + + NR + Sbjct: 272 VGYIISNHFNAKKMFVLIGEPHTGKSVWLSLLQILIGKEHTTSMTLKQLGVNRFMQT--- 328 Query: 550 NPSLIRLMGSRIVIISE-TNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFI 608 RL S++ I E +++ D IK +TGGD +T G + Sbjct: 329 -----RLAHSKLNISPEMSDDGDLKGVEFIKAVTGGDLITGDRK-GEAAIDFYGRTKLVA 382 Query: 609 VPNKHLFV--RNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAKKWFLKGVK 664 N + + A+ R + I F+ I R D QKL + KW L+G+ Sbjct: 383 AGNHMPKLAKHDGTTAFIDRLLFITFNNSIPERQRDRFLLQKL-LEERDIIIKWALEGLY 441 Query: 665 AYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGEN---LWEESHSLAKSYSEY 721 I ++ K++ D +++D C + L +Y Y Sbjct: 442 QLIDNNFIFTECNEAIQFKKKYMAELDNVTEFVNDMCVVEPENDKSRVHRTRLYDAYIIY 501 Query: 722 REQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773 + K +++ G R + +G++L Sbjct: 502 CKANGLTSVK---KTEFWREIEKFRVRSGKIRVE---GSTPLMGYRGIRLLS 547 >gi|254781190|ref|YP_003065603.1| hypothetical protein CLIBASIA_05485 [Candidatus Liberibacter asiaticus str. psy62] gi|254040867|gb|ACT57663.1| hypothetical protein CLIBASIA_05485 [Candidatus Liberibacter asiaticus str. psy62] Length = 233 Score = 197 bits (499), Expect = 8e-48, Method: Composition-based stats. Identities = 132/229 (57%), Positives = 167/229 (72%) Query: 45 KIDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILI 104 +D GFG +CG+G P+YAFD+D DE+ + F + F+ G PI R+GQ PK L+ Sbjct: 5 DVDHYVYNGFGILCGIGTHPVYAFDVDVLDEQVVDRFNNEFQSCCGKPISRVGQAPKTLM 64 Query: 105 PFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPL 164 FRM + +KK+K+ E QGHL+ L GQ FVAYNIHPKT++ YTW+ PH KVE+ PL Sbjct: 65 LFRMQETNLKKQKSEEKIQGHLEFLAYGQQFVAYNIHPKTQRAYTWSIAPHALKVEELPL 124 Query: 165 LSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNG 224 L+ ++VEY F+FF IT P K+K SK W ++NNR+YTN EI AFLSCFGEEFYNG Sbjct: 125 LTPDEVEYFFEFFDTITTPRDKEKSYRKLSKIWKSHNNRRYTNIEIRAFLSCFGEEFYNG 184 Query: 225 SHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFD 273 SHDEWIPVVMA+H+ETRGS++GKEI R W K G TYDE++FN KWD+FD Sbjct: 185 SHDEWIPVVMAIHYETRGSAEGKEIVREWCKLGRTYDEKSFNAKWDSFD 233 >gi|313633561|gb|EFS00357.1| gp60 [Listeria seeligeri FSL N1-067] Length = 217 Score = 197 bits (499), Expect = 9e-48, Method: Composition-based stats. Identities = 60/229 (26%), Positives = 99/229 (43%), Gaps = 18/229 (7%) Query: 552 SLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPN 611 + RL G+R V +E N+ ++ +KQ+TGGD +TAR Y + + E F ++ N Sbjct: 1 DIARLHGARFVTTTEPNDGVRLDEGLVKQLTGGDKVTARHLYKDEF-EFTPEFKIWMATN 59 Query: 612 KHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAKKWFLKGVKAYISK 669 +R DD WRR ++PF I + D KL W ++G + + Sbjct: 60 HKPIIRGRDDGIWRRLHLVPFTVKIPDEKVDKQLKYKL-RSELTGILNWAVEGFLKWQRE 118 Query: 670 GLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYD 729 GL +P+ A E D A+I+DCCD+ E + + ++Y E+ + Y Sbjct: 119 GL--GMPKAVENASSEYXXXXDVITAFIEDCCDVREGEKVNAKKMYETYREWAKDNGQY- 175 Query: 730 RKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESV 778 +S+ + G+K EK K K G+ L + S+ Sbjct: 176 --LMSSTKFGKEM-------GLKFEK--KRSKKGYKYTGVCLNDEYFSL 213 >gi|320140806|gb|EFW32654.1| nucleoside triphosphatase, D5 family [Staphylococcus aureus subsp. aureus MRSA131] Length = 678 Score = 196 bits (498), Expect = 1e-47, Method: Composition-based stats. Identities = 86/702 (12%), Positives = 213/702 (30%), Gaps = 84/702 (11%) Query: 92 PIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWT 151 L F K + + + T +++ ++ Sbjct: 5 TYCEKSPSGTGLHCFF--KGKLPDNRKKKRTDLDIELYDSARFMTVTGC----------- 51 Query: 152 TPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREIT 211 + + D + V+ FK + ++ + ++ N + Sbjct: 52 -TIGQSDICDNQEVLNTLVDEYFKENLPANEVVREESNTN------IQLSDEDIINIMMK 104 Query: 212 AFLSCFGEEFYNGSHDEWIP-----VVMAVHH----ETRGSSKGKEIARRWSKQGSTYDE 262 + ++ G+++ + V +H+ + + + I ++ ++ Sbjct: 105 SKQKDKIKDLLQGTYESYFESSSEAVQSLLHYLAFYTGKNKQQMERIFLNYNNLTDKWES 164 Query: 263 ENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKG 322 + N W E+ K + T + +IP+G K + + Sbjct: 165 KRGNTTW---GQLELDKAIKNQKTIYTKSIDEFNVIPQGSKD-------VKQLLNQLGHE 214 Query: 323 HFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKS 382 + +I + +I + + L+ D+ +N+K Sbjct: 215 E-----------RTKMEENWIEEGKRGRKPTTI-SPIKCAYILNEHLTFILFDDEENTKL 262 Query: 383 PRFWFNTDYRRQNVEENSKAKSTAQ----SLEAGSIFSITSDLLD-----SSSRFLGEQD 433 + F+ QN + S + S +A + ++++D +S + ++ Sbjct: 263 AMYQFDEGIYTQNTTIIKRVISYLEPKHNSNKADEVIYHLTNMVDIKEKTNSPYLIPVKN 322 Query: 434 GILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF-----LDLVSGY-FESEEVMDYFT 487 G+ + +T Q T + T T +V + E + +V+ Sbjct: 323 GVFNRKTKQLESFTPDYIFTSKIDTSYVRQDIVPEINGWNIDRWIEEIACNDNQVVKLLW 382 Query: 488 RCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAG 547 + + ++ G ++ I G G +GK T L+ G + + + ++ + Sbjct: 383 QVINDSMNGNYTRKKAIFFVGDGNNGKGTFQELLSNVIGYSNIASLKVNEFDE------- 435 Query: 548 KANPSLIRLMGSRIVIISETNENDEINA-AKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 L L G VI + ++ + K + GD + + T Sbjct: 436 --RFKLSVLEGKTAVIGDDVPVGVYVDDSSNFKSVVTGDPVLVEFKNK-PLYRATFKCTV 492 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 N ++ RR +++PF+ +F K + + ++ L Sbjct: 493 IQSTNGMPKFKDKTGGTLRRLLIVPFNANFNGIKENFKIKEDYIKNQQVLEYVLYKAINL 552 Query: 667 ISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQEL 726 + DIP+ K E ++ D + + D + + Y EY ++ Sbjct: 553 DFE--TFDIPDASKKMLEVFKEDNDPVYGFKVNMFDQWTIRKVPKYIVYAFYKEYCDENG 610 Query: 727 NYDRKRISTRTVTLNLKQ--KGFIGGIKREKIEKEWKSKRII 766 +S+ + + + + + + E +KRI Sbjct: 611 ---YNALSSNKFYKQFEHYLENYWKTDAQRRYDNEELAKRIY 649 >gi|168026035|ref|XP_001765538.1| predicted protein [Physcomitrella patens subsp. patens] gi|162683176|gb|EDQ69588.1| predicted protein [Physcomitrella patens subsp. patens] Length = 311 Score = 196 bits (498), Expect = 1e-47, Method: Composition-based stats. Identities = 64/270 (23%), Positives = 116/270 (42%), Gaps = 19/270 (7%) Query: 468 EFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 E LDL++ F +E++ YF R + L G N + F G G +GK+ +++L++ AFG+ Sbjct: 12 EVLDLLAKVFPNEDIRRYFMRFISSCLEGRNANKIFSIWSGSGDNGKTVMVSLVERAFGD 71 Query: 528 QYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCM 587 V S +M R ++ A P L L G I ++ E +E D++N +K++TG D + Sbjct: 72 YAV-KMPTSLLMGKR-VQSSAATPELAMLKGRLIALVQEPDEGDKLNLGVMKELTGNDSL 129 Query: 588 TARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--------- 638 R Y P + ++ N+ L + D A W R V+PF + Sbjct: 130 YIRGLYEEGAI-IPQTAKFVLIANRILQMSTFDKAVWSRVRVMPFVSTFVDKIEPSHNPL 188 Query: 639 ----RDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQ 694 +D +F+ K+ + ++ K Y++ GL + P+ E R D + Sbjct: 189 TTHLKDINFSNKIPL-LAPVFMRLVIEEYKQYLTYGL--EEPDEVKDCTETIRVSNDIFG 245 Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQ 724 ++ + L +Y + + Sbjct: 246 QFLSANVEKSNKSIVAIKELYDTYKYWSKD 275 >gi|171913150|ref|ZP_02928620.1| primase, putative [Verrucomicrobium spinosum DSM 4136] Length = 599 Score = 196 bits (498), Expect = 1e-47, Method: Composition-based stats. Identities = 88/469 (18%), Positives = 161/469 (34%), Gaps = 50/469 (10%) Query: 317 SIYKKGHFL-YTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPED 375 + Y + H Y +Y+ +N + KI+ + Sbjct: 164 TKYTQEHKCIYHGSEGEFYEYSQN-----TGLYSKISKETIKRRFL-------------- 204 Query: 376 NNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGI 435 + + + + + + QS+ S + D + +G+ Sbjct: 205 DELKNAAKVLGMPQLQILRKDSTVTSLLALLQSVVEQ------SRIFDEKPEAIHVANGM 258 Query: 436 LDLETGQKV--KPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMA 493 + E + + + +V FL + EE ++ + G Sbjct: 259 ICFEEDKVLLKSFHPSFLSRNACPYQYVPTATCNRFLTELLQPALREEDINMLQKWAGSV 318 Query: 494 LLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL 553 LLG NKAQR + + G G GKSTLM +++ G+Q V + L Sbjct: 319 LLGNNKAQRLMMLLGSAGGGKSTLMTVLEGVIGSQNVAQMRTEHL---------GERFEL 369 Query: 554 IRLMGSRIVIISET--NENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPN 611 + +G ++ + A+ IK + GGD + A N + +F I N Sbjct: 370 LSFVGKTLLTGKDVAAEFLRHKGASTIKSLVGGDLLEAEKKGFNNRVQIRGNFNIGITCN 429 Query: 612 KHLFVR--NPDDAWWRRYIVIPFDKPIANRDAS-FAQKLETKYTLEAKKWFLKGVKAYIS 668 L +R DAW RR +V+ + P + S F Q+L + +W ++G A I Sbjct: 430 ADLVIRLEGDVDAWRRRLLVLRYVAPPPKKRISGFDQELLKQEGAGILRWMVEGAIALIR 489 Query: 669 K---GLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQE 725 D + E E +D+ + ++ DC + E L + Y EY + Sbjct: 490 DLRTHGDYVLTERQQDQIEALLDQSDSIKLFVRDCLERSEGTDVTKKELEQEYCEYCD-- 547 Query: 726 LNYDRKRISTRTVTLNLKQKGFI--GGIKREKIEKEWKSKRIIKGLKLK 772 +STR ++ L K I + +R +G+++K Sbjct: 548 -TMGWSPLSTREISQQLNDKILKIHKVSCSHDIRRIGSQQRGFRGIRMK 595 Score = 68.0 bits (164), Expect = 6e-09, Method: Composition-based stats. Identities = 31/158 (19%), Positives = 47/158 (29%), Gaps = 8/158 (5%) Query: 46 IDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIP 105 + L G + G L A DID D+ + F + L T R + + Sbjct: 7 LQHLQTGNIGVLLGKESDNLCAIDID--DDDSVEPFLELNPRLRSTT--RTKGARGVQLW 62 Query: 106 FRMNKEGIKKKK-TTESTQGHLDILGCGQYFVAYNIHPKTKKEYT--WTTPPHRFKVEDT 162 R N E K K E + G V + IHP + EY T P + Sbjct: 63 IRCNGEYPKVTKIENEEGHPCGEWRADGGQSVIHGIHP-SGVEYRILVATSPILIAFSEI 121 Query: 163 PLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNN 200 S+ + ++ + I N Sbjct: 122 TWPSDWQLPWVKSPYDRIVDEEGPPVLEAANGGITLNQ 159 >gi|258510492|ref|YP_003183926.1| ATPase-like protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477218|gb|ACV57537.1| ATPase-like protein [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 1039 Score = 196 bits (497), Expect = 1e-47, Method: Composition-based stats. Identities = 64/394 (16%), Positives = 138/394 (35%), Gaps = 40/394 (10%) Query: 419 SDLLDSSSRFLGEQDGILDLET-----GQKVKPTKELYITKSTGTPFVEGEPSQ------ 467 ++ ++ + +G+LD+ + + + I PF E Sbjct: 626 HEVWNTEP-LVPFANGLLDMSDPFDHDWRVYDFSPKHRINWKLTIPFFENWHRTPKSWTL 684 Query: 468 -------EFLDLVSGYFESEEVMDYFTRCVGMALLGG-NKAQRFIHIRGVGGSGKSTLMN 519 + LD F +E +G L + + + G G +GKSTL+ Sbjct: 685 AMKDAEVDVLDFFRTTFPDDETRRSILEFLGYCLCRWDQSEECYAILYGPGQNGKSTLLG 744 Query: 520 LIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIK 579 ++ AFG V + S + + L + I I+ + + + +K Sbjct: 745 MLAKAFGVYAVTESVQSL---------ERNRFASACLTRAAIDIVPDMAGTGIEDTSFLK 795 Query: 580 QMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR 639 G D + A + ++ E N+ ++P ++RR ++ P + + Sbjct: 796 GWIGNDVVRAERKFKASF-EFKPQTKLIYGANELPPTKDPTHGYFRRILLYPMMERFKRQ 854 Query: 640 DASFAQKLETKYTLEAKKWF-LKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID 698 + ++L T L + L + +G ++ + L+ K+ + D +A ID Sbjct: 855 GPGWVERLRTPEALSYMCYLGLLHYRQMRREGRNITESKEMLREKDFYWRANDLVKAAID 914 Query: 699 D-CCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIE 757 + ++G++ L K+ Y ++ L++ K + Sbjct: 915 EGIIELGKDYSVPRDLLQKAMEIYAKETGR------KYPGAAKLLERLRNYAPHKIDYSR 968 Query: 758 KEWKSKRI--IKGLKLKPAFESVDDNSNIIDFKR 789 WK RI G++L A S+ + +++ R Sbjct: 969 PRWKGGRIHVWTGVRLGEAGRSLLVSREVVNLDR 1002 >gi|116872632|ref|YP_849413.1| phage-related DNA primase/helicase, putative [Listeria welshimeri serovar 6b str. SLCC5334] gi|116741510|emb|CAK20634.1| phage-related DNA primase/helicase, putative [Listeria welshimeri serovar 6b str. SLCC5334] Length = 780 Score = 196 bits (497), Expect = 1e-47, Method: Composition-based stats. Identities = 99/772 (12%), Positives = 203/772 (26%), Gaps = 88/772 (11%) Query: 20 LIPLRLGDKR---PQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKD-- 74 IP+ W + + ++K G GF + P + DID Sbjct: 31 KIPMNANTGAYGNSVDERTWADFETALASLEKYQFDGLGFYF---KAPYFGVDIDDIKDD 87 Query: 75 ------EKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDI 128 T N + + L + +I +G++++ Sbjct: 88 IQDYLYGNTENIAGEFIQTLASYTEYSVSGTGIHII-------AKGDFPEGGRRKGNIEM 140 Query: 129 LGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDK 188 G++FV Y +V + + E + ++ ++ Sbjct: 141 YPDGRFFVMTGQVIDN---YR--------QVNEATSAIKILHEKYIGTIENTSLTKHQNS 189 Query: 189 KSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHH-----ETRGS 243 + + + + +A + Sbjct: 190 SNDLSESEILEKAYNSQNGPYFKTLYEG----NWEAYYASQSDADLAFANMLAFWTAADY 245 Query: 244 SKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLL 303 K I R +D++ +T+ +G S S Sbjct: 246 DKMDTIFRDSGLMRDKWDQKRGQ---NTYGQITLGKAISGCSEVYSPKQSGNSYNINLKS 302 Query: 304 ASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKIT----ASIMNFL 359 ++ N+ +K K I + + L Sbjct: 303 RKNWAQLLNERRKKEL---------------EKLKEEWLISGGKGKQPSVISPIGCAIIL 347 Query: 360 VSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEA---GSIFS 416 E + W + + + A Sbjct: 348 KEFFRFCLFNMNENTRLAMYLEEDGIWTQNETYIRRFIGFLEPTLNANKASDVIYHLWKG 407 Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF-----LD 471 S + ++G+ +L+T + T + T TP+V P Q Sbjct: 408 AEVKEKTVSKYLIPVKNGVFNLKTKKLEAFTPDYVFTSKIATPYVANPPKQNINGWDVHT 467 Query: 472 LVSGY-FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530 + E++ + + +L G + I + G G +GK T L++ GN + Sbjct: 468 WLDEIACGDEQITSLLWQVISASLNGNYSRKSSIWLLGDGNNGKGTFQQLLRNLIGNSNI 527 Query: 531 INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA-AKIKQMTGGDCMTA 589 + + SL L I + I+ + + GD + Sbjct: 528 ATLKLPQFQE---------RFSLSILEEKVCCIGDDVPAGVYIDDSSNFNSVVTGDEIMV 578 Query: 590 RLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLET 649 + YS T N +RN D +RR+I++PF + ++ K E Sbjct: 579 EQKNKHPYSA-NFHMTVIQSTNGMPKMRNKTDGTYRRFIIVPFKANLKGGKDNWKIKDEY 637 Query: 650 KYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWE 709 E ++ L A P+V K EE + D + + ++ Sbjct: 638 IQNKEVLQYIL--FHAINMDFERFVEPDVSKKIMEEYKLDNDPILDYYERIFKEYKSTRI 695 Query: 710 ESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWK 761 + + + Y + E + K + R+ + G ++ K + K Sbjct: 696 PLYVVYEFYKYFCESN---NLKPVGDRSFYKRFGEILSEEGWEKGKHKLSGK 744 >gi|257870766|ref|ZP_05650419.1| DNA primase [Enterococcus gallinarum EG2] gi|257804930|gb|EEV33752.1| DNA primase [Enterococcus gallinarum EG2] Length = 477 Score = 195 bits (496), Expect = 2e-47, Method: Composition-based stats. Identities = 58/418 (13%), Positives = 144/418 (34%), Gaps = 33/418 (7%) Query: 380 SKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLE 439 + + ++ + + F+ +S ++G +++ Sbjct: 83 TDKLESFNKWSQQKLGETKKFIMIKIFDPTMKENPFN------NSKPYLANFKNGTYNIK 136 Query: 440 TGQKVKPTKELYITKSTGTPFVEGE--PSQEFLDLVSGYFESEEVMDYFTRCVGMALLGG 497 TG+ + YI +S ++ ++ + E+ + +G Sbjct: 137 TGELKPHDTKDYILQSHDYVVDPKSNLKPEKAIEWLRDLTGDEKSAQHLMEIIGYCFYRS 196 Query: 498 N-KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRL 556 Q ++G G +GKST ++ + G N ++ + AG L Sbjct: 197 YAPFQTITILQGSGENGKSTFLDFLTKVIGKDNTSNMTLQELGNKQNRFAG------ANL 250 Query: 557 MGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV 616 + ++ + + +K +TGGD ++A + + N+ Sbjct: 251 FQKEANLFADVDSEFLKSTGLLKALTGGDRLSAEFKGKDHFM-FVNFAKLIFSANELPAF 309 Query: 617 RNPDDAWWRRYIVIPFDKPIANRDASFAQKLET----KYTLEAKKWFLKGVKAYISKGLD 672 + + RR V+PFD I D SF K + K + + K + + + Sbjct: 310 NDFTHGFERRLYVVPFDCVI---DESFKTKHDLNAIEKEIPLFATYCISMFKEALDRK-E 365 Query: 673 VDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWE--ESHSLAKSYSEYREQELNYDR 730 + + + +AK++ + ++ +I++ C I E S + + Y ++ QE Sbjct: 366 LTVSDKMNQAKDKWLKESNHIMRFIEEKCSIDMESSEGDSSKKIYEEYQKFCYQE---SL 422 Query: 731 KRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDNSNIIDFK 788 + +S + L++ G + + + + W+ + L L+ + ++ + Sbjct: 423 RELSQPKFSKQLEKMGIVKVKQSVRGTRLWR----YRHLHLRNEYTPMESLEALASLD 476 >gi|168229313|ref|YP_001686834.1| orf40 [Streptococcus phage 858] gi|155241708|gb|ABT18028.1| orf40 [Streptococcus phage 858] Length = 514 Score = 195 bits (495), Expect = 2e-47, Method: Composition-based stats. Identities = 58/331 (17%), Positives = 127/331 (38%), Gaps = 22/331 (6%) Query: 421 LLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF-----LDLVSG 475 + +RF+ ++GI D + T E + T + S + Sbjct: 152 EFEEHNRFILVKNGIYDKKERILKPFTHEFVAFSTIATSYNPLAESPTINGWDVDSWLLD 211 Query: 476 YF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534 ++++ + + +L G ++ I G G GK T+ LI G + V + Sbjct: 212 LMNGDKDLVKLIWQVISASLNGNYSYRKSIWFVGEGNDGKGTVQQLITNLVGIKNVATLK 271 Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA-AKIKQMTGGDCMTARLNY 593 + + SL + G ++I + ++ + + G+ + Sbjct: 272 LNQFSE---------RFSLSIIEGKTVIIGDDVQAGIYVDESSNFNSVVTGEPVLVEEKN 322 Query: 594 GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTL 653 Y+ T N+ +N + +RR+++IPF K ++++ ++A K + Sbjct: 323 KQPYTTV-FKKTVIQSTNELPRFKNKTNGTYRRFVIIPFKKSFSSKEDNWAIKEDYINRK 381 Query: 654 EAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHS 713 E ++ LK KA D P+ ++A E+ ++ DT ++++ + D E+ S Sbjct: 382 EVLEYVLK--KALEMSFTRFDEPKASIEALEDFKESNDTVKSFVVEWFDKFESTRLPSRF 439 Query: 714 LAKSYSEYREQELNYDRKRISTRTVTLNLKQ 744 L Y E+ ++E +++ R L + Sbjct: 440 LWWLYQEWCKEEG---VTKLTKRKFENQLAK 467 >gi|293400042|ref|ZP_06644188.1| putative nucleoside triphosphatase, D5 family [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306442|gb|EFE47685.1| putative nucleoside triphosphatase, D5 family [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 628 Score = 195 bits (495), Expect = 2e-47, Method: Composition-based stats. Identities = 67/460 (14%), Positives = 155/460 (33%), Gaps = 53/460 (11%) Query: 308 SDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVF 367 +A+ K +F +K G FL D A + K+ ++ + L + + + Sbjct: 207 DEAFAKPVF--FKNGKFL--HDKFATFLKNNKHIILIDGNLHIYHDGVYEYDL------- 255 Query: 368 DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSR 427 + + + + + + S Sbjct: 256 ------------REIEKVMVEQISSLKTSQRKEVLNHLLLICDEAEL---------SPPH 294 Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY-FESEEVMDYF 486 + ++GILD+ TG +K ++ + +T F S+ DL+ +E+ + Sbjct: 295 LIPFRNGILDVLTGDLLKYSESIIVTNKIPWDFNINAYSELADDLMDRISCNDKEIRNIL 354 Query: 487 TRCVGMALLGGNKA--QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544 +G N + + G G +GKST +++I GN + + ++ Sbjct: 355 EEVIGSCFYRSNTLAGGKSFILTGTGSNGKSTFISIINTILGNNNISAIDMKNLD----- 409 Query: 545 EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604 A S +RL + + + + + + K++ GD + A G E Sbjct: 410 ----AKFSTVRLYKKLANLGDDISGEFKSDTSTFKKIVTGDKVEAEEK-GQPKFEFNPYC 464 Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLE--AKKWFLKG 662 N+ +++ A RR++++PF+ + D + ++ K + + + L G Sbjct: 465 KLIFSANEIPRMKDETGAAQRRFMIVPFNATFSENDDGYDPQIMWKLKNQQCIEYFILLG 524 Query: 663 VKAYIS--KGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGEN-LWEESHSLAKSYS 719 + K EE + ++I++C + + L E + Y Sbjct: 525 INGLKRVLTNKKFSSSTKVQKELEEYSIRNNPLLSFINECEETDQQILNEPVGDVYGKYQ 584 Query: 720 EYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKE 759 Y ++ + ++++ I ++ K+ Sbjct: 585 GYCINNG---YVPLAKNEFSKRMQRQLDIKTVRHVIKGKK 621 >gi|218442311|ref|YP_002380637.1| primase P4 [Cyanothece sp. PCC 7424] gi|218175415|gb|ACK74144.1| primase P4 [Cyanothece sp. PCC 7424] Length = 1000 Score = 195 bits (495), Expect = 3e-47, Method: Composition-based stats. Identities = 68/389 (17%), Positives = 141/389 (36%), Gaps = 28/389 (7%) Query: 404 STAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEG 463 S +E ++ + L D +L+L TG+ + + ++T P+ Sbjct: 417 SYLNGIEELLRKALYIKEWPKAPNLLPFSDCVLELSTGKTREHSPNNWLTWVLPRPYNSL 476 Query: 464 EPSQ-EFLDLVSG-YFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLI 521 E S + + ++ + L Q+F+H+ G GGSGKST MNL+ Sbjct: 477 EKSWIKIDNWLTEATLGNATHKQILLCYAAAVLRRRADLQKFLHLIGTGGSGKSTFMNLL 536 Query: 522 KYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM 581 G Q I+ + + + + + G + I + + + N + K++ Sbjct: 537 VALVGQQNTISLDFNSLNEKDA---------VAEAFGKVLAIFPDQDSAGK-NISNFKKI 586 Query: 582 TGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDA 641 TG D + R Y + + + N +F RR +++PF+ + + Sbjct: 587 TGQDLLRGRRLYKDGF-NFRFEGLCAVSSNHPIFHSGSGRWLTRRVLMVPFELAVPDGKV 645 Query: 642 SFAQKLETKYTLEAKKWFLKGVKAYISKGLD-VDIPEVCLKAKEEERQGTDTYQAWIDD- 699 +K + L ++ I L ++ +V + +D +W++D Sbjct: 646 RNLEKEFEPELSAFTSYLLSIPESEIEATLKGLNKKQVVSSTLWSSQIRSDGLASWVNDE 705 Query: 700 -------CCDIGENLWEESHSLAKS-----YSEYREQELNYDRKRISTRTVTLNLKQKGF 747 IG N E + + Y R+ ++ + NL + Sbjct: 706 IIFDSTARTQIGSNAKEWGEDDYDAASSTLFGSYCRHIRRSGRQPLTKDNFSANLIEL-L 764 Query: 748 IGGIKREKIEKEWKSKRIIKGLKLKPAFE 776 G +KR+ + + R + G++L+ A + Sbjct: 765 KGTLKRDVEKIKTNQGRFLTGVRLRTALD 793 >gi|254991956|ref|ZP_05274146.1| phage-related DNA primase/helicase, putative [Listeria monocytogenes FSL J2-064] Length = 780 Score = 195 bits (494), Expect = 3e-47, Method: Composition-based stats. Identities = 97/776 (12%), Positives = 201/776 (25%), Gaps = 96/776 (12%) Query: 20 LIPLRLGDKR---PQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKD-- 74 IP+ W + + ++K G GF + P + DID Sbjct: 31 KIPMNANTGAYGNSVDERTWADFETALASLEKYHFDGLGFYF---KAPYFGVDIDDIKDD 87 Query: 75 ------EKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDI 128 T N + + L + +I +G++++ Sbjct: 88 IQDYLYGNTENIAGEFIQTLASYTEYSVSGTGIHII-------AKGDFPEGGRRKGNIEM 140 Query: 129 LGCGQYFVAYNIHPKTKKE---------YTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQE 179 G++FV ++ Y T + + E Sbjct: 141 YPDGRFFVMTGQVIDNYRQVNEATSAIQYLHTKYIGTIENTSLTKHQNSSNDLSESEILE 200 Query: 180 ITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHE 239 + ++ ++ + + +D+ + Sbjct: 201 KAYNSQNGPYFKTLYEGNWEAYYASQSDADLA--FANMLAFWTAADYDK-------MDTI 251 Query: 240 TRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIP 299 R S ++ + +T+ +G S S Sbjct: 252 FRDSGLMRDKWDQ-------------KRGQNTYGQITLGKAISGCSEVYSPKQSGNSYNI 298 Query: 300 KGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKIT----ASI 355 ++ N+ + K K I + + Sbjct: 299 NLKSRKNWAQLLNERRKKELE---------------KLKEEWLISGGKGKQPSVISPIGC 343 Query: 356 MNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEA---G 412 L E + W + + + A Sbjct: 344 AIILKEFFRFCLFNMNENTRLAMYLEEDGIWTQNETYIRRFIGFLEPTLNANKASDVIYH 403 Query: 413 SIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF--- 469 S + ++G+ +L+T + T + T TP+V P Q Sbjct: 404 LWKGAEVKEKTVSKYLIPVKNGVFNLKTKKLEAFTPDYVFTSKIATPYVANPPKQNINGW 463 Query: 470 --LDLVSGY-FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFG 526 + E++ + + +L G + I + G G +GK T L++ G Sbjct: 464 DVHTWLDEIACGDEQITSLLWQVISASLNGNYSRKSSIWLLGDGNNGKGTFQQLLRNLIG 523 Query: 527 NQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA-AKIKQMTGGD 585 N + + + SL L I + I+ + + GD Sbjct: 524 NSNIATLKLPQFQE---------RFSLSILEEKVCCIGDDVPAGVYIDDSSNFNSVVTGD 574 Query: 586 CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQ 645 + + YS T N +RN D +RR+I++PF + ++ Sbjct: 575 EIMVEQKNKHPYSA-NFHMTVIQSTNGMPKMRNKTDGTYRRFIIVPFKANLKGGKDNWKI 633 Query: 646 KLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE 705 K E E ++ L A P+V K EE + D + + + Sbjct: 634 KDEYIQNKEVLQYIL--FHAINMDFERFVEPDVSKKIMEEYKLDNDPILDYYERIFKEYK 691 Query: 706 NLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWK 761 + + + + Y + E + K + R+ + G ++ K + K Sbjct: 692 STRIPLYVVYEFYKYFCESN---NLKPVGDRSFYKRFGEILSEEGWEKGKHKLSGK 744 >gi|307317147|ref|ZP_07596588.1| Primase 2 [Sinorhizobium meliloti AK83] gi|306897235|gb|EFN27980.1| Primase 2 [Sinorhizobium meliloti AK83] Length = 806 Score = 195 bits (494), Expect = 4e-47, Method: Composition-based stats. Identities = 118/801 (14%), Positives = 231/801 (28%), Gaps = 93/801 (11%) Query: 8 EQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQL-LSSEKIDKLPAC--GFGFVCGVGE-- 62 +Q ++ GF + L KRP W + L+ E++ K G G Sbjct: 3 DQIERLARAGFAIHWLHPKQKRPIG-ENWSTKPVLTLEQLKKTYKDGNNVGVRLGKWSKI 61 Query: 63 --QPLYAFDIDSKDEKTANTFKDTFEILHG----TPIVRIGQKPKILIPFRMNKEGIKKK 116 L+ D+D +D K A+ + L P V G + + ++ + K Sbjct: 62 GNDYLHVIDLDIRDPKLADEARQKLTELFPVWKTYPTVISGSGGESRHFYILSDKPFSPK 121 Query: 117 K------------TTESTQGHLDILGCGQYFVAYNI-HPKTKKEYTWTTPPHRFKVEDTP 163 K + +D+ G G+ HP T K Y W TP + D Sbjct: 122 KLAHSREKIQTADGKWHWRWEIDLFGTGKQVAMPPSIHPDTGKPYRWQTPFDFDDL-DLG 180 Query: 164 LLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYN 223 L + L K + EI L +++ Sbjct: 181 LGPMVGSDVLAKMLDMDADDERAAADPERS-------KPLGLSLDEIREVLDDLPRDYWR 233 Query: 224 GSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKK 283 D W+ V M++HHET GS G ++ +SK +D+ + W +F + + Sbjct: 234 DDRDGWLTVGMSLHHETGGSDHGYKLWLDFSKDSEKFDKSDQKRVWKSF---KGSQKPVR 290 Query: 284 RSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYI 343 +T + L +D + KK K + Sbjct: 291 MATLVTAAREARLDEEFENLDDDVTDDLDAPEQDTEFDDILGTEHGDTKRAKKLKKSETE 350 Query: 344 WSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAK 403 L ++ + T N EN + Sbjct: 351 ADLGH-----VPPKVRRMNRKHAVAFVNGKTVIVTEHMDGTTAYGTPNELHNWYENDRVA 405 Query: 404 STAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEG 463 + + S +GI+ GQ+ + K Sbjct: 406 TEKAT-------EPVSKAWMRHKLRRQYPNGIV-FAPGQERDGYFNHW--KGFAVEPDSE 455 Query: 464 EPSQEFLDLVSGYF--ESEEVMDYFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLMNL 520 + LD + +EE Y + K + +RG GK T+ + Sbjct: 456 GSCRLILDHLKNVICSGNEEYYRYALGWFAHMIQRPFEKPGVAMVLRGKKRIGKDTIADY 515 Query: 521 IKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQ 580 I F + +V+ A ++ K L+ + ++ +K Sbjct: 516 IGGLFPHHHVVIANQEQLVGKFNAHQEKC--LLLHVQEGFWA-------GNKNAEGSLKY 566 Query: 581 MTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVR-NPDDAWWRRYIVIPFDKPIANR 639 + + + N + + F+ N+ V D+ RY V+ D + Sbjct: 567 LITSEKVFIEPKGLNGFH-VDSYLRLFMSSNEDWVVPATADEG---RYFVL--DVSPHRK 620 Query: 640 DASFAQKLETKYTL-EAKKWFLKGVKAYISKGLDV-DIPEVCLKAKEEERQGTDTYQAWI 697 D + + L ++ Y +V +P+ A+++ + + W Sbjct: 621 DDHGYFRAIRNERDHGGQAALLHYLQNYDLSDFEVRKVPDTTALAQQKVQGLKN-IDKWW 679 Query: 698 DDCCDIGENLW-------------------EESHSLAKSYSEYREQELNYDRKRISTRTV 738 D + GE + + ++YSE+ ++ Y+ + + + Sbjct: 680 FDMLESGELEFPCYSIKGGNAGQWLTEPVMVDRDEFRQAYSEWMRRQ-RYNGEELVKFMI 738 Query: 739 TLNLKQKGFIGGIKREKIEKE 759 +++ +R + + Sbjct: 739 GKRMREILPQIEDRRRREGAK 759 >gi|144898907|emb|CAM75771.1| primase [Magnetospirillum gryphiswaldense MSR-1] Length = 757 Score = 194 bits (493), Expect = 4e-47, Method: Composition-based stats. Identities = 64/298 (21%), Positives = 113/298 (37%), Gaps = 30/298 (10%) Query: 7 KEQAKQAIHNGFKLIPLRLGDKRPQRLGK--------WE---EQLLS---SEKIDKLPAC 52 + + NG+ IP+ G K+P R W ++ + E P Sbjct: 9 ARFGARLVDNGYPAIPIWPGSKKPGRFQAGAWCDYPAWTRHCDRPTTLIEVETWATWPDA 68 Query: 53 GFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHG-TPIVRIGQKPKILIPFRMNKE 111 G CG L DID D A+ + + G TP++RIG+ PK L+ +R + Sbjct: 69 AIGLACGT----LVGIDIDVLDPDIAHRLERLARDMLGDTPLLRIGKAPKRLLVYRADVP 124 Query: 112 GIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTW-TTPPHRFKVEDTPLLSEEDV 170 K+ L+IL G+ FVA+ IHP T + Y W P ++D P+++E+ V Sbjct: 125 FSGPKRAP------LEILAHGRQFVAFAIHPDTGQPYVWPEDSPLTVALDDLPVVTEDSV 178 Query: 171 EYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWI 230 + + ++ P+ + + + ++ T + + L+ + +D W+ Sbjct: 179 RAWLEAAIALLPTELRPATLESPAASMPSTSPQRGTLAAVRSALAHI--PNADLDYDSWV 236 Query: 231 PVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFT 288 + MAV +G + WS + W +F IG Sbjct: 237 RIGMAVKGAI--GEEGASLFAAWSAMSAKDVPATTANAWASFRPTTIGAGTIYHFAME 292 >gi|307591546|ref|YP_003900345.1| primase P4 [Cyanothece sp. PCC 7822] gi|306986400|gb|ADN18279.1| primase P4 [Cyanothece sp. PCC 7822] Length = 1012 Score = 194 bits (493), Expect = 4e-47, Method: Composition-based stats. Identities = 95/652 (14%), Positives = 198/652 (30%), Gaps = 51/652 (7%) Query: 162 TPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEF 221 P + +++ Q+ ++ + W T E L Sbjct: 153 LPYHQNAEGQWINAKGQQGWPAYRIEEAITYSTNKWVLGV-EGETCVEAARSLMLVSNTM 211 Query: 222 YNGSHDEWIPVVMAVHHETRGSSKGKEIA----RRWSKQGSTYDEENFNYKWDTFDFEEI 277 G E + + + G ++ + K+ + + Sbjct: 212 QGGCWGE-VDLGTWLTQLKNNGVTGLVYWPDNDDDGQRKAQKLLAASGKVKFPVLILKPL 270 Query: 278 GDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFS--IYKKGHFLYTADTKAWYK 335 A T + + +G+ F A+ + + +T Sbjct: 271 EIWADIPET-GDIADWVKWGLTQGMTGDEFIKRLELAIHEAVLSRHESPPVEENTPTQQT 329 Query: 336 KDKNNVYIWSLTLDKITASIM---NFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYR 392 I S+ ++ M+ + N ++ Sbjct: 330 ALPKQNRIASVIAERYLNKFRYNNEANTWMEYQDEAIKGGAWIAVSNLHIQTQIYHILQA 389 Query: 393 RQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYI 452 R +S S + L + L D +LDL TG+ ++ + Y+ Sbjct: 390 RNYEFNSSYLNSIEELLRKALYI----KEWPKTPNLLPFSDCVLDLYTGKTIEHSPNNYL 445 Query: 453 TKSTGTPFV-EGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVG 510 T P+ + E + ++ + L Q+F+H+ G G Sbjct: 446 TWVLPRPYNVPLQSWTEIDNWLTEATRSNAAHKQILLCYAAAVLRRRADLQKFLHLIGTG 505 Query: 511 GSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN 570 GSGKST MNL+ G Q I+ + + + + + G + I + + Sbjct: 506 GSGKSTFMNLLVALVGQQNTISLDFTSLNEKDA---------VAEAFGKVLAIFPDQDSA 556 Query: 571 DEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVI 630 + N + K++TG D + R Y + + + N +F RR +++ Sbjct: 557 GK-NISNFKKITGQDLLRGRRLYKDGF-NFRFEGMCAVSSNNPIFHSGSGRWLTRRVLMV 614 Query: 631 PFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLD-VDIPEVCLKAKEEERQG 689 PF+ + + +K + L + I L ++ +V K E + Sbjct: 615 PFELAVPDGKVRNLEKEFEPELSAFTHYLLSIPETQIEATLKGLNKKQVISKTLWESQIR 674 Query: 690 TDTYQAWIDD--------CCDIGENLWEESHSLA-----KSYSEYREQELNYDRKRISTR 736 +D +W++D IG N E + + Y R+ ++ Sbjct: 675 SDGLASWLNDEIVFEVTARTQIGSNAREWDNLDYDPTTSTLFGSYCHHIKRSGRQPLTKD 734 Query: 737 TVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLK-------PAFESVDDN 781 + NL + G +KR+ + + R I G++L+ P + + +N Sbjct: 735 NFSANLIEL-LKGTLKRDVEKVKTNQGRFITGVRLRTLHDFEIPCLDELLEN 785 >gi|323144216|ref|ZP_08078849.1| phage/plasmid primase, P4 family, C-terminal domain [Succinatimonas hippei YIT 12066] gi|322416008|gb|EFY06709.1| phage/plasmid primase, P4 family, C-terminal domain [Succinatimonas hippei YIT 12066] Length = 633 Score = 194 bits (493), Expect = 5e-47, Method: Composition-based stats. Identities = 49/327 (14%), Positives = 106/327 (32%), Gaps = 15/327 (4%) Query: 403 KSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVE 462 K+ +EA I + + R++G ++GI DLE + + + IT ++ Sbjct: 277 KNIRNEVEAFINDFIIENATVADPRYIGFKNGIYDLEERKLISFDPNIVITNPINHNYIS 336 Query: 463 GEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLI 521 + +S + + +G L N Q+F + G G +GKS I Sbjct: 337 DAYDADTDKFLSNITCGDKALRANLEELLGYCLYRENSLQKFFLLYGSGSNGKSMFCTFI 396 Query: 522 KYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM 581 + G + + + + + + I + + + A +K + Sbjct: 397 RAVLGEENCSSESLQRLGERFGSSS---------IYNKLANICDDNSSMHIKDPAMLKIL 447 Query: 582 TGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDA 641 + G +++S NK + + A RR ++IPF++ I + Sbjct: 448 SSGGNYQTEFKGKDSFS-YTPFCKLIFCMNKLPKINDNGQAVQRRLVIIPFNRSIPENEQ 506 Query: 642 SFAQKLETKYTLEAK---KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID 698 A K + + + ++G+ + E + + ++ Sbjct: 507 DTALKKKLTKDSAIEYGIRIAIEGLNRLLENN-KFTESEKIDQQLNNYLGYNNPIADFVK 565 Query: 699 DCCDIGENLWEESHSLAKSYSEYREQE 725 I L + Y Y E+ Sbjct: 566 KKGGIEYLLSNYCGDIYSEYQRYCEEN 592 >gi|49237319|ref|YP_031600.1| putative D5 family NTPase/ATPase [Frog virus 3] gi|47060137|gb|AAT09681.1| putative D5 family NTPase/ATPase [Frog virus 3] Length = 973 Score = 193 bits (491), Expect = 7e-47, Method: Composition-based stats. Identities = 64/301 (21%), Positives = 111/301 (36%), Gaps = 22/301 (7%) Query: 461 VEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNL 520 P + L + F E +F R +GGN + + G G +GK+ L Sbjct: 655 DFKGPVTKLLAFFASVFPDEGTRRFFLRNAAATFVGGNPDKVVLFWTGTGNNGKTVTQTL 714 Query: 521 IKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRL-MGSRIVIISETNENDEINAAKIK 579 + G V + + R P AG ANP + RL G R ++ E N ++ INA +K Sbjct: 715 FEKMLGCFAVKMSTQTLT--GRKPSAGSANPEMARLGGGVRWAVMEEPNSDETINAGTLK 772 Query: 580 QMTGGDCMTARLNY--GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637 MTG D AR Y G T E F ++ N +++ D A W R V+PF+ Sbjct: 773 SMTGNDSFFARDLYCAGKTTFEIKPMFKLHVICNALPGIKDADQATWNRVRVVPFESTFV 832 Query: 638 NR--------------DASFAQKLETKYTLEAKKWFLKGVKA-YISKGLDVDIPEVCLKA 682 D +KL+ W+L A ++ + P ++A Sbjct: 833 TPGTTAPADAKYVFPADTDITRKLDRLTAP--LAWYLVYCWACIQNERVKYVPPPKVMEA 890 Query: 683 KEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNL 742 ++ D ++ ++++ + ++ ++ + R V L Sbjct: 891 TMAYQKEHDLFRQFVEEMLRKDPDSTLTCDDAYTAFRDWTSANSPHGTVRRPKGQVVKCL 950 Query: 743 K 743 + Sbjct: 951 E 951 Score = 130 bits (326), Expect = 9e-28, Method: Composition-based stats. Identities = 48/333 (14%), Positives = 99/333 (29%), Gaps = 44/333 (13%) Query: 174 FKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVV 233 + + L ++ T +R ++TA L+ + W+ V Sbjct: 272 LADYSAVMAKLDVARQRKPAWNTDATKAHRLKRVTDLTAMLTADLAD----DRQTWLNVG 327 Query: 234 MAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKW------DTFDFEEIGDTAKKRSTF 287 + +T GS++G ++ +SK+ DE+ W ++F + A+K + Sbjct: 328 FCLWQQTSGSAEGYKVWLSFSKKSDKCDEDECWTIWNNQMRPNSFTEGTLVYLAQKHNPG 387 Query: 288 TSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYI---W 344 L + K P + + A K M+ Y T+ WY+ D Sbjct: 388 AYLNWLQVKSTPVNDIGTNV--AMAKIMWDYYGHQFVCCGGKTQTWYRFDGLTWVESNQG 445 Query: 345 SLTLDKITASIMNFLVSMKEDVFDLSEEP---------EDNNKNSKSPR----------- 384 + I+A + + ++ ED+ ++S + Sbjct: 446 TDLRSLISAEGGPLRRLLMRQLDAVTAAKARGGRDSGNEDDEEDSATDEDDSNPWDSELR 505 Query: 385 ---------FWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGI 435 + +E + + D++DS +GI Sbjct: 506 RLDSEVLDTMVKRLRNNLKGIEMTGVKNNVLRECAELFYQPEFGDVIDSDPLLFAFANGI 565 Query: 436 LDLETGQKVKPTKELYITKSTGTPFVEGEPSQE 468 D G E +++ FV P + Sbjct: 566 YDFREGCLRDGRPEDKLSRRAPVDFVMFGPIPK 598 >gi|313683547|ref|YP_004061285.1| phage/plasmid primase, p4 family [Sulfuricurvum kujiense DSM 16994] gi|313156407|gb|ADR35085.1| phage/plasmid primase, P4 family [Sulfuricurvum kujiense DSM 16994] Length = 463 Score = 193 bits (490), Expect = 8e-47, Method: Composition-based stats. Identities = 59/414 (14%), Positives = 135/414 (32%), Gaps = 30/414 (7%) Query: 376 NNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGI 435 ++ + + F + + K + + + + Q+G+ Sbjct: 59 SDVHQEQSFFLKKIIEKLTGGKIPVSMKFISSVYIELLNEYFIPEETEGYLALINVQNGL 118 Query: 436 LDLETGQK--VKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMA 493 L + + L ++ + F ++ + E + +G Sbjct: 119 LGISKDDIELYEADPSLGYRYVLSYEYIPEAKAPIFEKFLAETVQDENSIKVIYEYMGYI 178 Query: 494 LLGGNKAQRFIHIR-GVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS 552 LLG + + + G G +GKS L+ + G N E ++ Sbjct: 179 LLGKHLSLEAALLLLGDGRNGKSVLIKTLMKFVGEDNTSNVELQELSNPNRT-------- 230 Query: 553 LIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612 + + G + + S++++ + ++++ K+ + +T R Y + Y N Sbjct: 231 -VTMDGKLLNVGSDSSDKN-FDSSQFKRAISNEPITGRRLYHDAYV-IKDLPKFVFAMNN 287 Query: 613 HL-FVRNPDDAWWRRYIVIPFDKPIANRD-ASFAQKLETKYTLEAKKWFLKGVKAYISKG 670 + RR +I FDK IA + + K K ++G++ I +G Sbjct: 288 LPLSQGDTSFGLLRRLKIIKFDKIIAEHEIDRYLDKKIEKELSGILNLAIEGLRRLIKQG 347 Query: 671 LDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDI-GENLWEESHSLAKSYSEYREQELNYD 729 + KA + + + +I+D E + + L +++ E+ + E Sbjct: 348 -GFTESDAINKAVKSYEDEINMVKRFIEDVSIAHSEKGYMSNQQLYETFVEWCKDEG--- 403 Query: 730 RKRISTRTVTLNLKQKGFIG---------GIKREKIEKEWKSKRIIKGLKLKPA 774 K S + L+ GF + K+ K + G +L+ Sbjct: 404 IKVPSKSFLLKKLRSSGFAPYKNNAVKGFRVTVTKMTLSPKDESRYAGKRLRSK 457 >gi|256818700|ref|YP_003135767.1| phage/plasmid primase, P4 family [Cyanothece sp. PCC 8802] gi|256592440|gb|ACV03310.1| phage/plasmid primase, P4 family [Cyanothece sp. PCC 8802] Length = 1172 Score = 193 bits (489), Expect = 1e-46, Method: Composition-based stats. Identities = 86/581 (14%), Positives = 185/581 (31%), Gaps = 77/581 (13%) Query: 235 AVHHETRGSS--KGKEIARRWSKQGSTYDEENFNYKW-----DTFDFEEIGDTAKKRSTF 287 A H ++ K E A WS+ E + + + ++ T Sbjct: 376 ATHGTDSDAAIKKVLEEAIAWSRLIPKEQESDLKAFYWVEIQQAIGSTDTSQFVEQLQTI 435 Query: 288 TSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLT 347 + +G+ + S+ + + + + WY+ + IWS Sbjct: 436 KT-----QASPVEGIPNWKASEL--AEYIAYRHQSTLAWNTQIEQWYRYEGKEKGIWS-- 486 Query: 348 LDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQ 407 K ++ L +E + R +N + + + Sbjct: 487 ------------KDDKYYIWQLIQE--------ELKAIALIHQQRDKNGNKPGFSHNLVA 526 Query: 408 SLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ 467 S+E S+ DS L ++G+L+L+T + + + +T + Sbjct: 527 SIENLLKGSLPVRQWDSIEGLLPLKNGVLNLKTQEFHQHDPKYCLTYCLPYEYNPLATCH 586 Query: 468 EFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFG 526 LD ++ ++++F + + G + Q ++ + G GG+GK TL L G Sbjct: 587 PILDWLNQMTGGDRIMVEFFRAHLAAIVRGRSDIQSYLELLGPGGTGKGTLTRLATALVG 646 Query: 527 NQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDC 586 +Q ++ ++ +NR R+ G+++V+I++ + + +K +TG D Sbjct: 647 DQNTVSTTLKNLEENR--------FDTARIFGAKLVVITDAEKFGG-EVSVLKALTGEDK 697 Query: 587 MTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA-NRDASFAQ 645 + Y A I N+ + RR I + + Sbjct: 698 LRFEQKYKQPLDGFYAQSRVIICANEAPQSSDYTSGLARRRQTTYLTNKIPIEKQRNLIS 757 Query: 646 K-------LETKYTLEAKKWFL----KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQ 694 +Y W L + ++ I + + P + K + T+ Sbjct: 758 INGKGVTGEFAQYLPGLLNWVLAMPPEELERAIRE-IPTTHP-SFTQHKAQVLCETNPIA 815 Query: 695 AWIDDCCDIGENLWE-----------ESHSLAK-----SYSEYREQELNYDRKRISTRTV 738 W+D E S +L + Y+ Y E + + +S R Sbjct: 816 DWLDQAVVYREGWRTNVGMAKRDKDSSSPNLFQCVNQWLYANYAEFCQSSGARPVSLRRF 875 Query: 739 TLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVD 779 L+ + + + + +GLKL+ ++ Sbjct: 876 VNLLRDL-AVNQLGLMVKKGRDRLGAFFEGLKLRSEMDNDP 915 >gi|218203882|ref|YP_002364737.1| phage/plasmid primase, P4 family [Cyanothece sp. PCC 8801] gi|218169669|gb|ACK68405.1| phage/plasmid primase, P4 family [Cyanothece sp. PCC 8801] Length = 1172 Score = 193 bits (489), Expect = 1e-46, Method: Composition-based stats. Identities = 86/581 (14%), Positives = 186/581 (32%), Gaps = 77/581 (13%) Query: 235 AVHHETRGSS--KGKEIARRWSKQGSTYDEENFNYKW-----DTFDFEEIGDTAKKRSTF 287 A H ++ K E A WS+ E + + + ++ T Sbjct: 376 ATHGTDSDAAIKKVLEEAIAWSRLIPKEQESDLKAFYWVEIQQAIGSTDTSQFVEQLQTI 435 Query: 288 TSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLT 347 + + +G+ + S+ + + + + WY+ + IWS Sbjct: 436 KT-----QASLVEGIPNWKASEL--AEYIAYRHQSTLAWNTQIEQWYRYEGKEKGIWS-- 486 Query: 348 LDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQ 407 K ++ L +E + R +N + + + Sbjct: 487 ------------KDDKYYIWQLIQE--------ELKAIALIHQQRDKNGNKPGFSHNLVA 526 Query: 408 SLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ 467 S+E S+ DS L ++G+L+L+T + + + +T + Sbjct: 527 SIENLLKGSLPVRQWDSIEGLLPLKNGVLNLKTQEFHQHDPKYCLTYCLPYEYNPLATCH 586 Query: 468 EFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFG 526 LD ++ ++++F + + G + Q ++ + G GG+GK TL L G Sbjct: 587 PILDWLNQMTGGDRIMVEFFRAHLAAIVRGRSDIQSYLELLGPGGTGKGTLTRLATALVG 646 Query: 527 NQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDC 586 +Q ++ ++ +NR R+ G+++V+I++ + + +K +TG D Sbjct: 647 DQNTVSTTLKNLEENR--------FDTARIFGAKLVVITDAEKFGG-EVSVLKALTGEDK 697 Query: 587 MTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA-NRDASFAQ 645 + Y A I N+ + RR I + + Sbjct: 698 LRFEQKYKQPLDGFYAQSRVIICANEAPQSSDYTSGLARRRQTTYLTNKIPIEKQRNLIS 757 Query: 646 K-------LETKYTLEAKKWFL----KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQ 694 +Y W L + ++ I + + P + K + T+ Sbjct: 758 INGKGVTGEFAQYLPGLLNWVLAMPPEELERAIRE-IPTTHP-SFTQHKAQVLCETNPIA 815 Query: 695 AWIDDCCDIGENLWE-----------ESHSLAK-----SYSEYREQELNYDRKRISTRTV 738 W+D E S +L + Y+ Y E + + +S R Sbjct: 816 DWLDQAVVYREGWRTNVGMAKRDKDSSSPNLFQCVNQWLYANYAEFCQSSGARPVSLRRF 875 Query: 739 TLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVD 779 L+ + + + + +GLKL+ ++ Sbjct: 876 VNLLRDL-AVNQLGLMVKKGRDRLGAFFEGLKLRSEMDNDP 915 >gi|313633608|gb|EFS00380.1| gp60 [Listeria seeligeri FSL N1-067] Length = 217 Score = 193 bits (489), Expect = 1e-46, Method: Composition-based stats. Identities = 52/192 (27%), Positives = 88/192 (45%), Gaps = 9/192 (4%) Query: 552 SLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPN 611 + RL G+R V +E NE ++ +KQ+TGGD +TAR Y + + E F ++ N Sbjct: 1 DIARLHGARFVTTTEPNEGVRLDEGLVKQLTGGDKVTARHLYKDEF-EFTPEFKIWMATN 59 Query: 612 KHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAKKWFLKGVKAYISK 669 +R DD WRR ++PF I + D KL W ++G + + Sbjct: 60 HKPIIRGRDDGIWRRLHLVPFTVKIPDEKVDKQLKYKL-RSELTGILNWAVEGFLKWQRE 118 Query: 670 GLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYD 729 GL +P+V A E + D A+I+DCCD+ E + + ++Y ++ ++ Y Sbjct: 119 GLG--MPKVVENASSEYKXXXDVITAFIEDCCDVREGEKVNAKKMYETYRDWAKENGQY- 175 Query: 730 RKRISTRTVTLN 741 +S+ Sbjct: 176 --LMSSTKFGKE 185 >gi|154503078|ref|ZP_02040138.1| hypothetical protein RUMGNA_00901 [Ruminococcus gnavus ATCC 29149] gi|153796319|gb|EDN78739.1| hypothetical protein RUMGNA_00901 [Ruminococcus gnavus ATCC 29149] Length = 601 Score = 192 bits (488), Expect = 2e-46, Method: Composition-based stats. Identities = 67/551 (12%), Positives = 172/551 (31%), Gaps = 36/551 (6%) Query: 244 SKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLL 303 + I + Q + + KW E A + + + K Sbjct: 62 EDMRSIQFHGTCQSAYHYVAACTTKWMNDRILEFCKEAGLDGKAGWQLFKEKEYLGKLDN 121 Query: 304 ASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMK 363 A + + + + ++K D ++ + + N ++ Sbjct: 122 QPEVGKALEQFILRFER--ETKNDPELSRFHKFDSKGKVTGVRDMEIVDYIVENVSFFVR 179 Query: 364 EDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLD 423 ++ E + ++ +S + L S L+ Sbjct: 180 GEIPYYYEHGVFIEDAKGVKLKYRIQKLIYRDRVNSSTIQRVYNLLITQPQIYRNSYELN 239 Query: 424 SSS-RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ------EFLDLVSGY 476 ++ ++ D+ +G+ ++ + P+ + + + Sbjct: 240 KQPAHWINFRNAYYDVLSGELIEHDPKYLTINQIPFPYYPEDREKVLEGGANIRKYLDSS 299 Query: 477 FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEAS 536 + F G + + Q+F+ ++G GG+GKS + LI++ GN+ + Sbjct: 300 IPDKIEQQMFWEYFGYCMTTDTQFQKFLMLKGNGGTGKSVAVALIQHVIGNENTSSISLQ 359 Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNT 596 D+ + + G + ++ +K+ G D + + Sbjct: 360 DLNKRFYATG---------MYGKLLNACADIPCKAMDTTDVLKKAVGEDTLLYEKKGKDA 410 Query: 597 YSESPASFTPFIVPNKHLF-VRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTL 653 A N+ + + DA++RR +V+ ++ I RD +K+ Sbjct: 411 VF-YKAYAKLLFSTNEMPQNLEDKSDAFYRRLLVLDMNQMIPGEERDIRLKEKI-KAEAD 468 Query: 654 EAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHS 713 A + +K +G ++ E + E R+ +D+ A++D+ E + Sbjct: 469 YAIHMAVIALKDVYERG-ELIESEHSKECVRELRRASDSVCAFLDEKLVQAEGKRMKRSE 527 Query: 714 LAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773 + + Y EY + DR+ +++ KG+ +++ + + ++ Sbjct: 528 VYRMYEEYCKDN---DRQGHGKSGFFKSMEGKGYQV--------RKYNGEYCYLDIAIRE 576 Query: 774 A-FESVDDNSN 783 F ++ Sbjct: 577 EDFHPLEAGEK 587 >gi|225734507|gb|ACO25275.1| D5 family NTPase [Epizootic haematopoietic necrosis virus] Length = 973 Score = 192 bits (487), Expect = 2e-46, Method: Composition-based stats. Identities = 65/303 (21%), Positives = 111/303 (36%), Gaps = 22/303 (7%) Query: 459 PFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLM 518 P P + L + F E +F R +GGN + + G G +GK+ Sbjct: 653 PKDFKGPMAKLLAFFASVFPDEGTRRFFLRNAAATFVGGNPDKVVLFWTGTGNNGKTVTQ 712 Query: 519 NLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRL-MGSRIVIISETNENDEINAAK 577 L + G V + + R P AG ANP + RL G R ++ E N ++ INA Sbjct: 713 TLFEKMLGCFAVKMSTQTLT--GRKPSAGSANPEMARLGGGVRWAVMEEPNSDETINAGT 770 Query: 578 IKQMTGGDCMTARLNY--GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP 635 +K MTG D AR Y G T E F ++ N +++ D A W R V+PF+ Sbjct: 771 LKSMTGNDSFFARDLYCAGKTTFEIKPMFKLHVICNALPGIKDADQATWNRVRVVPFEST 830 Query: 636 IANR--------------DASFAQKLETKYTLEAKKWFLKGVKA-YISKGLDVDIPEVCL 680 D +KL+ W+L A ++ + P + Sbjct: 831 FVTPGTTAPADAKYVFPADTDITRKLDRLTAP--LAWYLVYCWACIQNERVKYVPPPKVM 888 Query: 681 KAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTL 740 +A ++ D ++ + ++ + ++ ++ + R V Sbjct: 889 EATMAYQKEHDLFRQFTEEMLRKDPDSTLTCDDAYTAFRDWTSANSPHGTVRRPKGQVVK 948 Query: 741 NLK 743 L+ Sbjct: 949 CLE 951 Score = 130 bits (325), Expect = 1e-27, Method: Composition-based stats. Identities = 48/333 (14%), Positives = 100/333 (30%), Gaps = 44/333 (13%) Query: 174 FKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVV 233 + + L ++ T +R E+T L+ + W+ V Sbjct: 272 LADYSAVMAKLDVARQRKPAWNTDATEAHRLKRVTELTVMLTADLAD----DRQTWLNVG 327 Query: 234 MAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKW------DTFDFEEIGDTAKKRSTF 287 + +T GS++G ++ +SK+ DE+ W ++F + A+K + Sbjct: 328 FCLWQQTSGSAEGYKVWLSFSKKSDKCDEDECWTIWNNQMRPNSFTEGTLVYLAQKHNPG 387 Query: 288 TSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYI---W 344 L + K P + + A K M+ Y T+ WY+ D Sbjct: 388 AYLNWLQVKSTPVNDIGTNV--AMAKIMWDYYGHQFVCCGGKTQTWYRFDGLTWVESNQG 445 Query: 345 SLTLDKITASIMNFLVSMKEDVFDLS-------------EEPEDNNKNSKSPRFWFNTDY 391 + I+A + + ++ ++ ED+ + W + Sbjct: 446 TDLRSLISAEGGPLRRLLMRQLDAVTAAKARGGRDSGNEDDEEDSATDEDDSNPWDSELR 505 Query: 392 R----------------RQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGI 435 R + +E + + D++DS +G+ Sbjct: 506 RLDSEVLDAMVKRLRNNLKGIEMTGVKNNVLRECTELFYQPEFGDVIDSDPLLFAFANGV 565 Query: 436 LDLETGQKVKPTKELYITKSTGTPFVEGEPSQE 468 D G E +++ FV P + Sbjct: 566 YDFREGCLRDGRPEDKLSRRAPVDFVMFGPIPK 598 >gi|125625287|ref|YP_001033770.1| hypothetical protein llmg_2534 [Lactococcus lactis subsp. cremoris MG1363] gi|124494095|emb|CAL99096.1| conserved hypothetical protein [Lactococcus lactis subsp. cremoris MG1363] gi|300072099|gb|ADJ61499.1| hypothetical protein LLNZ_13090 [Lactococcus lactis subsp. cremoris NZ9000] Length = 542 Score = 192 bits (487), Expect = 2e-46, Method: Composition-based stats. Identities = 53/336 (15%), Positives = 117/336 (34%), Gaps = 21/336 (6%) Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF-----LDLVSGYF-ESE 480 + +GI + +T Q + + T + T + + D ++ + Sbjct: 178 HLIPVANGIFNKKTQQLEPFSPKYVFTSTIATKYNAKAKAPNINGWNIDDWLNDLMSGDK 237 Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540 E++ + + + G ++ I + G G GK T +LI G + V + +A + Sbjct: 238 ELVKLLWQVISASTNGNYSYRKGIWLVGKGNDGKGTFQSLIMNLIGRENVASVKAEQFSE 297 Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600 +L +++G VI ++ + NA + GD + Sbjct: 298 ---------RFALSQVVGKTCVIGDDSQVSYLDNAGNYFSVVTGDPVPIEAKGKQPTLAV 348 Query: 601 PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFL 660 + N RN + +RR +++PF+K + ++ K + + ++ L Sbjct: 349 -FNKLVIQSTNFLPKFRNKSNGTYRRLLIVPFEKSFTADNDNWKIKDDYIKRKDVLEYVL 407 Query: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSE 720 K + D P+ ++ + D A+++D + + + + L+ Y Sbjct: 408 KIALSL--NFDKFDEPKATQGLLDDFKISNDNVLAFVNDMFEEFVSDFLPTTFLSALYRA 465 Query: 721 YREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKI 756 + E E K + R L IK + Sbjct: 466 WCEDEG---VKPFTKREFENKLPDHIKEKWIKTTQR 498 >gi|237720962|ref|ZP_04551443.1| phage/plasmid primase P4 [Bacteroides sp. 2_2_4] gi|229449797|gb|EEO55588.1| phage/plasmid primase P4 [Bacteroides sp. 2_2_4] Length = 524 Score = 192 bits (486), Expect = 3e-46, Method: Composition-based stats. Identities = 51/364 (14%), Positives = 119/364 (32%), Gaps = 33/364 (9%) Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY 476 + L + + + + D+ + + T + E + + Sbjct: 85 VAGKALKPDNAIVVFNNCVFDMNARRAHSFNRRWVQTTCVPYDYKPEEHVFLWRMFLDEV 144 Query: 477 FESEEVMDYFTRCVGMALLGGN--KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534 + + +G + K + + +RG G +GKS + I G + V N Sbjct: 145 LPDKNMQKVLQEFLGSIFVDRRVAKMETMLVLRGSGSNGKSVVFETIMGILGRENVSN-- 202 Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEND-EINAAKIKQMTGGDCMTARLNY 593 + ++ + G R+ SE + ++ +K + G+ AR Y Sbjct: 203 ---FGIGALITGNERKKNIAFINGKRLNYCSEIQALEFGKDSDTLKSLISGEPTEARPIY 259 Query: 594 GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDASFAQKLETKY 651 G+ ++ N+ ++++ RR +IPF+ I + ++ LE Sbjct: 260 GDNFTAYNIP-LLMANANQMPYLKDWSYGMRRRICIIPFEVEIPKARQKKELSRDLE-AE 317 Query: 652 TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWI---------DDCCD 702 W L+G +I+ G + + +E + + T ++ ++ D Sbjct: 318 YPAIFNWILEGRDRFIANGYKLTDSKELENVMDEYQSESSTVMKFMYQMNYLCRYEEIAD 377 Query: 703 IGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKS 762 I W S L + Y ++ + + L + G+ +K + Sbjct: 378 IEPK-WMSSAILYRKYCKWCKDNNTKEENV---TVFGRILSEAGY--------RKKRTPN 425 Query: 763 KRII 766 ++ Sbjct: 426 GQVY 429 >gi|77463706|ref|YP_353210.1| hypothetical protein RSP_0135 [Rhodobacter sphaeroides 2.4.1] gi|77388124|gb|ABA79309.1| conserved hypothetical protein [Rhodobacter sphaeroides 2.4.1] Length = 479 Score = 192 bits (486), Expect = 3e-46, Method: Composition-based stats. Identities = 59/345 (17%), Positives = 106/345 (30%), Gaps = 30/345 (8%) Query: 273 DFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKA 332 E + + + + ++ F+ G + D Sbjct: 17 GPEGVRAQFDQMEDIPPPRPRQPPPAQEDPVEIEVTEDGVARAFTEKYGGTLRFDHDAGR 76 Query: 333 WYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYR 392 WY W + + F + SE + + ++ + R Sbjct: 77 WY--------HWQEDHWQADTTSRAFEYC-RRLARLASEGAKHSLLSTARKASFAGGVER 127 Query: 393 RQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYI 452 A ++T + D + +DL TG+ P E I Sbjct: 128 LAR---------------ADPAHAVTQEAWDRDPWLVACPGETVDLRTGRSAVPRPEDGI 172 Query: 453 TKSTGTPFVEGEPSQEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGG 511 T+ E + + VM + + G +L G + + + G GG Sbjct: 173 TRRVAVAPAAQETCPTWWQFLEDATGADSSVMRFLQQWAGYSLTGITREHTLVFLYGDGG 232 Query: 512 SGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEND 571 +GKS +N + G+ + + + L L G+R+V SET E Sbjct: 233 NGKSVFINTLTGLLGDYAATAGMETFTASK----SDRHPTDLAMLAGARLVAASETEEGR 288 Query: 572 EINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV 616 ++IKQMTGGD +TAR + + F +V N + Sbjct: 289 AWAESRIKQMTGGDRITARFMRRD-FFTYTPQFKLTLVGNHRPAL 332 >gi|56692689|ref|YP_164147.1| D5 family NTPase [Singapore grouper iridovirus] gi|42517401|gb|AAS18067.1| D5 family NTPase [Singapore grouper iridovirus] Length = 968 Score = 192 bits (486), Expect = 3e-46, Method: Composition-based stats. Identities = 72/345 (20%), Positives = 120/345 (34%), Gaps = 34/345 (9%) Query: 445 KPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFI 504 + + P P L S F E +F R +GGN + + Sbjct: 635 PWSPTGENCVFSCDPKDFSGPVARLLTFFSTVFPDEGTRRFFLRNAAQTFIGGNPDKVCL 694 Query: 505 HIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRL-MGSRIVI 563 G G +GK+ L + G V + + R P AG ANP L RL G R + Sbjct: 695 FWTGTGNNGKTVTQTLFEKMLGCFAVKMSTQTLT--GRKPSAGAANPELARLGCGVRWAV 752 Query: 564 ISETNENDEINAAKIKQMTGGDCMTARLNY--GNTYSESPASFTPFIVPNKHLFVRNPDD 621 + E N ++ INA +K MTG D AR Y G T E F ++ N +++ D Sbjct: 753 MEEPNSDETINAGTLKSMTGNDSFFARDLYCAGKTTHEIKPLFKLHVICNTLPAIKDADQ 812 Query: 622 AWWRRYIVIPFDKPIANR--------------DASFAQKLETKYTLEAKKWFLKGVKA-Y 666 A W R V+PF+ D ++KL+ W+L + Sbjct: 813 ATWNRVRVVPFEATFVTPGTKAPADAKYKFPADTDISRKLDRLTAP--LAWYLVYCWSCM 870 Query: 667 ISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQEL 726 ++ + P ++A E ++ D ++ + D+ ++ E+ Sbjct: 871 QNETVKYVPPAKVMEATMEYQKEHDLFRQFYDEKLHQNPTACLSCDEAYAAFREWATLNC 930 Query: 727 NYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771 + R S + L+ K +G++L Sbjct: 931 PHSFARRSKTQIVKCLE------------TILGKKGPTGWQGIEL 963 Score = 131 bits (330), Expect = 4e-28, Method: Composition-based stats. Identities = 52/381 (13%), Positives = 109/381 (28%), Gaps = 61/381 (16%) Query: 133 QYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSII 192 + + +IHP +++Y L+ + + L ++ Sbjct: 226 REAMILSIHPVERQKYFRRYDFTANNPGALLRLT---------KYSAVRAKLDMVRQRKT 276 Query: 193 PSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARR 252 KT ++ RE+T L+ + W+ V + +T+GS +G +I Sbjct: 277 CWKTDLTEFHKLKRFRELTGMLTGDIAD----DRQSWLHVGFCLWQQTQGSLEGYKIWLN 332 Query: 253 WSKQGSTYDEENFNYKW------DTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASR 306 +SK+ DE+ W ++F + +K + L + K P + + Sbjct: 333 FSKKSEKCDEDECWRIWNNQMRPNSFTEGTLVYMVQKHNPAAYLNWLQTKSTPVKDMGTN 392 Query: 307 FSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKIT------ASIMNFLV 360 A K M+ Y A + WY+ D + +D + + L Sbjct: 393 V--AMAKIMWDYYGHEFVCCGAKNQIWYRFDGLTWVESNQGIDLRSLISADGGPLKRLLT 450 Query: 361 SMKEDVFDLSEEP------------------------------EDNNKNSKSPRFWFNTD 390 E V + + + Sbjct: 451 RQLEAVKTALAQADGGNDSGISDVEEDEELEETDEEDGDNGNPWASELRRLPKKKLKIII 510 Query: 391 YRRQNVEENSKA----KSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP 446 R ++ + + + + SD LD+ +G+ D + G Sbjct: 511 ARLKSNLKGIEMTGVKNNVLRECAELFYRPNFSDELDADPLLFAFSNGVYDFKEGCLRDG 570 Query: 447 TKELYITKSTGTPFVEGEPSQ 467 E +++ F+ P Sbjct: 571 RPEDKLSRRAPIDFIAFAPIP 591 >gi|48477428|ref|YP_023134.1| virulence-associated protein E [Picrophilus torridus DSM 9790] gi|48430076|gb|AAT42941.1| virulence-associated protein E [Picrophilus torridus DSM 9790] Length = 1004 Score = 191 bits (484), Expect = 4e-46, Method: Composition-based stats. Identities = 106/753 (14%), Positives = 215/753 (28%), Gaps = 76/753 (10%) Query: 8 EQAKQAIHNGFKLIPLRLGDKRP-QRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLY 66 + I N + L K P +++ + I G G ++ Sbjct: 4 RYLDEFIKNKIPVFLLPPHRKDPIPGSRGFKDWTKDEKIIRSWKTENMGIPTGDIS-GIF 62 Query: 67 AFDIDSKDEKTAN-------------TFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGI 113 +D D K + N K E + P I Q + G+ Sbjct: 63 VYDCDIKTGENGNIGINGLYGFLKILKLKTLDEYIQKYPDAFIVQTGSGYQFYFKIPVGL 122 Query: 114 K---KKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDV 170 + T + LD+ G G Y VA EY ++ PL+ E+ Sbjct: 123 DHNLRNTTNINGIKGLDVRGNGGYVVAPGSIHPNGNEYKIIHGS----LDKIPLMPEKLY 178 Query: 171 EYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCF---GEEFYNGSHD 227 ++ + ++ + + N N T I + Sbjct: 179 NLWYEHDHPDLLSDDFNEPRMPLNLNDENLNLDIKTTAMIFKKTPASEGNNLLMAHAGLH 238 Query: 228 EWIPVVMAVHHETRGSSKGKEIA---RRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKR 284 V + + ++ +Y K + E+ K Sbjct: 239 ALRDVSIENEKLILKEAAALNHWNGKINFATVDDSYRRVELQKKGNIPADEKSKTFVKGY 298 Query: 285 STFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIW 344 +T + + + + D K + +L+ + +Y D +NV + Sbjct: 299 TTLKRIIMENRENYSENY------DEIIKNL-------EYLFESHESPFYDVDGHNVKHF 345 Query: 345 S-LTLDKITASIMNFLV--SMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSK 401 + K S FL + ++ N+ + F TD N Sbjct: 346 NKGKSIKYVMSKYPFLYTDDFDNLYYFSVQDGWHNDIENSLKNFIQTTDDSLSEHNINEI 405 Query: 402 AKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKST-GTPF 460 ++ L ++ + G+ ++E K + + Sbjct: 406 ISGIKHITYNKEF---KNNPLPNN--LIPLPSGLYNVENHALEKHNNNYFYSNINRNFIP 460 Query: 461 VEGEPSQEFLDLVSGYFESEEVMDY-FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMN 519 E S + + E + +LL N Q I G GG+GK + N Sbjct: 461 GVKEESLALSRFLDKVLTNPEKDKLTVYESIAWSLLNDNNIQGMIIFYGEGGNGKGIIQN 520 Query: 520 -LIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKI 578 +I G++ + S I L L+ + ++ SE+ + N + Sbjct: 521 SVIANLLGHENAAMPDLSRIA--------NYPFELQSLINKKALLFSESIKGVTYNWEIL 572 Query: 579 KQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYI-VIPFDKPI- 636 K++TG D + + F+ N + ++ + WRR I ++ F + Sbjct: 573 KRITGHDYENIPIKNK-PAIQYQYKSAVFLSTNNLIPPKDE-LSIWRRIINIVEFSNYLN 630 Query: 637 ---ANRDASFAQKLETK-YTLEAKKWFLK-GVKAYISKGLDVDIPEVCLKAKEEERQGTD 691 ++ + +L+ + + + +I G AKE+ ++ Sbjct: 631 SLSSDEISKIVSELQDPNELDKLFSFIVDNIYPEFIKHGFKHRYN--INTAKEKYLMKSN 688 Query: 692 TYQAWIDDCCDIGENLWEESHSLAKSYSEYREQ 724 ++ E L + + L EY + Sbjct: 689 PAITYLKLKESRDEILTDPNDVL-----EYCKA 716 >gi|56418240|gb|AAV91054.1| D5 family NTPase [Grouper iridovirus] Length = 966 Score = 191 bits (484), Expect = 4e-46, Method: Composition-based stats. Identities = 72/345 (20%), Positives = 120/345 (34%), Gaps = 34/345 (9%) Query: 445 KPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFI 504 + + P P L S F E +F R +GGN + + Sbjct: 633 PWSPTGENCIFSCDPKDFSGPVARLLAFFSTVFPDEGTRRFFLRNAAQTFIGGNPDKVCL 692 Query: 505 HIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRL-MGSRIVI 563 G G +GK+ L + G V + + R P AG ANP L RL G R + Sbjct: 693 FWTGTGNNGKTVTQTLFEKMLGCFAVKMSTQTLT--GRKPSAGAANPELARLGCGVRWAV 750 Query: 564 ISETNENDEINAAKIKQMTGGDCMTARLNY--GNTYSESPASFTPFIVPNKHLFVRNPDD 621 + E N ++ INA +K MTG D AR Y G T E F ++ N +++ D Sbjct: 751 MEEPNSDETINAGTLKSMTGNDSFFARDLYCAGKTTHEIKPLFKLHVICNTLPAIKDADQ 810 Query: 622 AWWRRYIVIPFDKPIANR--------------DASFAQKLETKYTLEAKKWFLKGVKA-Y 666 A W R V+PF+ D ++KL+ W+L + Sbjct: 811 ATWNRVRVVPFEATFVTPGTKAPADAKYKFPADTDISRKLDRLTAP--LAWYLVYCWSCM 868 Query: 667 ISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQEL 726 ++ + P ++A E ++ D ++ + D+ ++ E+ Sbjct: 869 QNETVKYVPPTKVMEATMEYQKEHDLFRQFYDEKLHQNPTACLSCDEAYAAFREWATLNC 928 Query: 727 NYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771 + R S + L+ K +G++L Sbjct: 929 PHSFARRSKTQIVKCLE------------TILGKKGPTGWQGIEL 961 Score = 132 bits (331), Expect = 3e-28, Method: Composition-based stats. Identities = 54/381 (14%), Positives = 108/381 (28%), Gaps = 61/381 (16%) Query: 133 QYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSII 192 + + +IHP +++Y L+ + + L ++ Sbjct: 226 REAMILSIHPVERQKYFRRYDFTANNPGALLRLT---------KYSAVRAKLDMVRQRKT 276 Query: 193 PSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARR 252 KT ++ RE+T L+ + W+ V + +T+GS +G +I Sbjct: 277 CWKTDLTEFHKLKRFRELTGMLTGDIAD----DRQSWLHVGFCLWQQTQGSLEGYKIWLN 332 Query: 253 WSKQGSTYDEENFNYKW------DTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASR 306 +SK+ DE+ W ++F + +K + L + K P + + Sbjct: 333 FSKKSEKCDEDECWRIWNNQMRPNSFTEGTLVYMVQKHNPAAYLNWLQTKSTPVKDMGTN 392 Query: 307 FSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKIT------ASIMNFLV 360 A K M+ Y A + WY+ D + +D + + L Sbjct: 393 V--AMAKIMWDYYGHEFVCCGAKNQIWYRFDGLTWVESNQGIDLRSLISADGGPLKRLLT 450 Query: 361 SMKEDVFDLSEEPEDNNK----------------------------------NSKSPRFW 386 E V + + N K Sbjct: 451 RQLEAVKTALAQADGGNDSGISDVEDDEELEETDEEDGDNGNPWASELRRLPKKKLKLIM 510 Query: 387 FNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP 446 + +E + + SD LD+ +G+ D + G Sbjct: 511 ARLKSNLKGIEMTGVKNNVLRECAELFYRPNFSDELDADPLLFAFSNGVYDFKEGCLRDG 570 Query: 447 TKELYITKSTGTPFVEGEPSQ 467 E +++ F+ P Sbjct: 571 RPEDKLSRRAPIDFIAFAPIP 591 >gi|229192873|ref|ZP_04319831.1| hypothetical protein bcere0002_45240 [Bacillus cereus ATCC 10876] gi|228590712|gb|EEK48573.1| hypothetical protein bcere0002_45240 [Bacillus cereus ATCC 10876] Length = 741 Score = 191 bits (484), Expect = 5e-46, Method: Composition-based stats. Identities = 104/787 (13%), Positives = 238/787 (30%), Gaps = 78/787 (9%) Query: 6 WKEQAKQAIHNGFKLIP--LRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQ 63 WK + + ++ +P L + W E+ + G GF+ E Sbjct: 2 WKAEVR---NSKATKVPYQLNGSMAQSNNRNTWSTFEEVLEEYQQGDYNGIGFMF-SKED 57 Query: 64 PLYAFDIDSKDEKTA-NTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTEST 122 DID ++ + L + I I + ++ Sbjct: 58 VFIGIDIDHCVQEGEFTELAEDIMKLVPSYTEYSPSGDGIHIIAKGKIPLRGPGTGKKNP 117 Query: 123 QGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITV 182 L+I G+YF P + E+ +L ++ +E T Sbjct: 118 SIGLEIYRHGRYFTFTGASIN--------NLPVKESTENLKVLFQKYIEKKEVLVVPKTP 169 Query: 183 PLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHH---- 238 + ++ S + R + ++ A F NG H MA+ + Sbjct: 170 SVSRESNINNLSSSELW--ERMFNSKNGRAIRDLFCGVLINGDHSS---TDMALANHLAF 224 Query: 239 -ETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKL 297 + ++K + R + +D K + D G + Sbjct: 225 WTDKDAAKMDSMFRESALIRDKWD------KPHSSDGRTYGQMT---------IEKAIES 269 Query: 298 IPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMN 357 + S YN+ H+L + K + + IM Sbjct: 270 THSSVSDYNHSSDYNRK-----NDVHYLVNEQGETTGIKKGSWWSENNG-RTSFLHHIMV 323 Query: 358 FLVSMKEDVFDLSEEPEDNNKNSKSPRFW--FNTDYRRQNVEENSKAKSTAQSLEAGSIF 415 + + + E D +++ + T + +++ +++ Q E Sbjct: 324 EYILQENKIVRFPNEDGDIYVYNRATGIYEIDKTCRKLRSLVRDAEILKRNQVREVQEYI 383 Query: 416 SITSDLLDS-SSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVS 474 S +++ S ++ ++G+L L++ + + T +++TK T + + Sbjct: 384 MDMSPVVNEESKNYIAVENGLLHLDSMEFKEFTPMVFVTKKIPTKYNSKAFDSFVERTLM 443 Query: 475 GYFESEEV--MDYFTRCVGMALLGGNKAQRFIHIRG-VGGSGKSTLMNLIKYAF-GNQYV 530 + + G L + ++ G +GKST++ +I+ F + + Sbjct: 444 KV-SDGHLPTIKNIHEMFGAVLYPTLLVPKMFYLYGRSAHNGKSTVLYMIQKTFNSGENI 502 Query: 531 INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR 590 + +N + + G I+ + + ++ +K + G + Sbjct: 503 SAISPQKLAENAFAGSS--------IYGKLANIVDDQPDEVIRDSGTLKTIITGGYVDIE 554 Query: 591 LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETK 650 G + N + R + +R ++PFD N ++ K Sbjct: 555 YK-GKGSQTVQMNTVCITASNHYPNFREHGNQINKRLHILPFDHNFMNDPDRISEMESMK 613 Query: 651 ------YTLEAKKWFLKGVKAYISKGLD-VDIPEVCLKAKEEERQGTDTYQAWIDDCCDI 703 K + +K + +D + E +AK+ + D + + Sbjct: 614 QLETVTAREYVLKLAVDAIKEMKQRTVDILTYNEKAEEAKQNFMEYNDPLIDFF---FEY 670 Query: 704 GENLWEESH--SLAKSYSEYREQELNYDRKRISTRTVTLNL-KQKGFIGGIKREKIEKEW 760 + +EE K+Y E+ + + + + + + + G K+ KI Sbjct: 671 DKQFFEEVRGTDALKAYDEWCKDN--HVQYPLGQKQFKDAVCTKYGMEWKDKKVKINSTS 728 Query: 761 KSKRIIK 767 K+ + K Sbjct: 729 KTVKGFK 735 >gi|148543897|ref|YP_001271267.1| P4 family phage/plasmid primase [Lactobacillus reuteri DSM 20016] gi|184153296|ref|YP_001841637.1| phage DNA primase [Lactobacillus reuteri JCM 1112] gi|227364805|ref|ZP_03848853.1| P4 family phage/plasmid primase [Lactobacillus reuteri MM2-3] gi|325682570|ref|ZP_08162087.1| phage/plasmid primase [Lactobacillus reuteri MM4-1A] gi|148530931|gb|ABQ82930.1| phage/plasmid primase, P4 family [Lactobacillus reuteri DSM 20016] gi|183224640|dbj|BAG25157.1| phage DNA primase [Lactobacillus reuteri JCM 1112] gi|227070149|gb|EEI08524.1| P4 family phage/plasmid primase [Lactobacillus reuteri MM2-3] gi|324978409|gb|EGC15359.1| phage/plasmid primase [Lactobacillus reuteri MM4-1A] Length = 463 Score = 191 bits (484), Expect = 5e-46, Method: Composition-based stats. Identities = 77/440 (17%), Positives = 144/440 (32%), Gaps = 40/440 (9%) Query: 352 TASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEA 411 + + + + S + +R + SK + Sbjct: 44 SNQFIEHGYWFDPKSRQWKNYADSVIEKSIKNEIVPHGIWRTNLLASVSKLIALDSQ--- 100 Query: 412 GSIFSITSDLLDS-SSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFL 470 + + D + +L T + E Y+ ++ + + Sbjct: 101 ---EIVEDNPFDQPAPYKAVFGKHTYNLMTDTLEDNSPENYLLQNRPYELETKGKATTWN 157 Query: 471 DLVSGYF--ESEEVM---------------DYFTRCVGMALLGGNK-AQRFIHIRGVGGS 512 + ++E+ + +G AL G K Q ++ + G+GG Sbjct: 158 KWLKQSLVPSTKEIRDDTGKLQDEYDLTAIETVKAFIGFALAGSFKDFQIYMILYGLGGD 217 Query: 513 GKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDE 572 GKST +N + G V N + + +A + +L + ++ + Sbjct: 218 GKSTFLNKLMELIGKPNVSNVSLEALSDQK-----EAKFATSQLYHKAANVFADISPKFM 272 Query: 573 INAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF 632 IK +TGGD TA+ Y + + + N + D + RR I++ F Sbjct: 273 EQTNIIKTLTGGDATTAQFKYKDPF-KLENEAKLIFSANDLPAFNDFTDGFKRRPIIVTF 331 Query: 633 DKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDT 692 I + F ++ + LK K + G + E + K D Sbjct: 332 -HKIKHFKEQFKEQDFKREMPAFAYECLKSYKKALDSG-KFPVTEYMEQQKRSWVNANDN 389 Query: 693 YQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIK 752 WI+DCC EN E+S L +Y EY + N +S R L +G+ K Sbjct: 390 IGNWINDCCTTNENDKEKSVYLYGNYKEYCK---NTAVPCLSNRKFAKELIARGY----K 442 Query: 753 REKIEKEWKSKRIIKGLKLK 772 ++ K+ + KG+ LK Sbjct: 443 HTTVKINGKNVKGYKGIALK 462 >gi|237710652|ref|ZP_04541133.1| phage/plasmid primase P4 [Bacteroides sp. 9_1_42FAA] gi|229455374|gb|EEO61095.1| phage/plasmid primase P4 [Bacteroides sp. 9_1_42FAA] Length = 545 Score = 191 bits (484), Expect = 5e-46, Method: Composition-based stats. Identities = 51/364 (14%), Positives = 118/364 (32%), Gaps = 33/364 (9%) Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY 476 + L + + + + D+ + + T + E + + Sbjct: 106 VAGKALKPDNAIVVFNNCVFDMSARRAHSFNRRWVQTTCVPYDYKPEEHVFLWRMFLDEV 165 Query: 477 FESEEVMDYFTRCVGMALLGGN--KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534 + + +G + K + + +RG G +GKS + I G + V N Sbjct: 166 LPDKNMQKVLQEFLGSIFVDRRVAKMETMLVLRGSGSNGKSVVFETIMGILGRENVSN-- 223 Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEND-EINAAKIKQMTGGDCMTARLNY 593 + ++ + G R+ SE + ++ +K + G+ AR Y Sbjct: 224 ---FGIGALITGNERKKNIAFINGKRLNYCSEIQALEFGKDSDTLKSLISGEPTEARPIY 280 Query: 594 GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDASFAQKLETKY 651 G+ ++ N+ ++++ RR +IPF+ I + ++ LE Sbjct: 281 GDNFTAYNIP-LLMANANQMPYLKDWSYGMRRRICIIPFEVEIPKARQKKELSRDLE-AE 338 Query: 652 TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWI---------DDCCD 702 W L+G +I+ G + + +E + + T ++ ++ D Sbjct: 339 YPAIFNWILEGRDRFIANGYKLTDSKELENVMDEYQSESSTVMKFMYQMNYLCRYEEIAD 398 Query: 703 IGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKS 762 I W S L + Y ++ + L + G+ +K + Sbjct: 399 IEPK-WMSSAILYRKYCKWCRDNNAKEENV---TVFGRILSEAGY--------RKKRTPN 446 Query: 763 KRII 766 ++ Sbjct: 447 GQVY 450 >gi|281492874|ref|YP_003354854.1| phage DNA primase [Lactococcus lactis subsp. lactis KF147] gi|281376526|gb|ADA66012.1| Phage protein, DNA primase [Lactococcus lactis subsp. lactis KF147] Length = 542 Score = 190 bits (483), Expect = 6e-46, Method: Composition-based stats. Identities = 50/322 (15%), Positives = 113/322 (35%), Gaps = 21/322 (6%) Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF-----LDLVSGYF-ESE 480 + +GI + +T Q + + T + T + D + + Sbjct: 178 HLIPVANGIFNKKTQQLEPFSPKYVFTSTIATKYNAKAKVPNINGWNVDDWLLDLMSGDK 237 Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540 E++ + + + G ++ + + G G GK T +LI G + V + +A + Sbjct: 238 ELVSLLWQIISASTNGNYSYRKGVWLVGKGNDGKGTFQSLIMNLIGRENVASVKAEQFSE 297 Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600 SL +++G +I ++ + NA + GD + Sbjct: 298 ---------RFSLSQVVGKTCIIGDDSQVSYLDNAGNYFSVVTGDPVPIEAKGKQPTLAV 348 Query: 601 PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFL 660 + N RN + +RR +++PF+K + ++ K + + ++ L Sbjct: 349 -FNKLVIQSTNFLPKFRNKSNGTYRRLLIVPFNKSFTADNDNWKIKDDYIKRKDVLEYVL 407 Query: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSE 720 K + + D P+ ++ + D A+++D + + + + L+ Y Sbjct: 408 KIALSLNFE--KFDEPKATQGLLDDFKISNDNVLAFVNDMFEEFVSDFLPTTFLSALYRA 465 Query: 721 YREQELNYDRKRISTRTVTLNL 742 + E E K + R L Sbjct: 466 WCEDEG---VKPFTKREFENKL 484 >gi|169826081|ref|YP_001696239.1| hypothetical protein Bsph_0484 [Lysinibacillus sphaericus C3-41] gi|168990569|gb|ACA38109.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41] Length = 656 Score = 190 bits (483), Expect = 6e-46, Method: Composition-based stats. Identities = 67/404 (16%), Positives = 138/404 (34%), Gaps = 28/404 (6%) Query: 377 NKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGIL 436 NKNS + ++ + N + + + ++ L SS + + + Sbjct: 271 NKNSDRIIRKIIPENSKKYINSNKITEILVWIKSSDELVCAETNTL-SSKYLISFSNYVY 329 Query: 437 DLETGQKVKPTKELYITKSTGTPFVEGEPSQ---EFLDLVSGYFESEE-VMDYFTRCVGM 492 D++ + + +IT F S F ++ +++ + D G Sbjct: 330 DIKNEITLDHSSRYFITNKLNANFTIPLTSDSGIHFEKFLNTITQNDSVLYDRLQELFGY 389 Query: 493 ALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS 552 L + + G +GKS ++ L++Y G N + Sbjct: 390 VLSEIRDIKYIPILIGQKDTGKSVILKLLEYIIGEDNFSNISIDQF---------NNSVY 440 Query: 553 LIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612 L L G R+ +E +E + +K+++G D +TAR Y + + N Sbjct: 441 LAELYGKRLNSCAEISELNLKRLDILKKLSGNDYVTARPMYSDP-IKFINQSVLLFAGNN 499 Query: 613 HLFVR--NPDDAWWRRYIVIPFDKPIAN--RDASFAQKLETKYTLEAKKWFLKGVKAYIS 668 + + A+ R ++ PF+ PI +D KL W +KG+ ++ Sbjct: 500 LPNIENLDSSSAFKERLLLFPFNNPIPKEHQDNELIDKLI-AEIDYIAHWSIKGIHRLLN 558 Query: 669 KGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNY 728 + +++ + ++ C + L ++Y Y E NY Sbjct: 559 NNFQFTTSFEIEDTFKPYL--SNSLEEFLLSECAYQTKYQIHTDDLYQAYIVYCE---NY 613 Query: 729 DRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLK 772 K IS ++ LK++ + + +K G+ LK Sbjct: 614 SFKIISKKSFIQILKKQ---SNLSFRRFRMRGTNKYGFIGIGLK 654 >gi|326407787|gb|ADZ64858.1| phage protein, DNA primase [Lactococcus lactis subsp. lactis CV56] Length = 544 Score = 190 bits (483), Expect = 7e-46, Method: Composition-based stats. Identities = 48/325 (14%), Positives = 113/325 (34%), Gaps = 21/325 (6%) Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF-----LDLVSGYF- 477 + + + +GI + T + T + T + D + Sbjct: 175 AEAHLIPVANGIFNKNTQNLEPFSPSYVFTSTIATKYNAKAKVPNINGWNVDDWLLDLMS 234 Query: 478 ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537 +E++ + + + G ++ + + G G GK T +LI G + V + +A Sbjct: 235 GDKELVSLLWQIISASTNGNYSYRKGVWLVGKGNDGKGTFQSLIMNLIGRENVASVKAEQ 294 Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597 + +L +++G +I ++ + NA + GD + Sbjct: 295 FAE---------RFALSQVVGKTCIIGDDSQVSYLDNAGNYFSVVTGDPVPIEAKGKQPT 345 Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKK 657 + N RN + +RR +++PF+K + + ++ K + + + Sbjct: 346 LAV-FNKLVIQSTNFLPKFRNKSNGTYRRLLIVPFNKSFTSDNDNWKIKDDYIKRKDVLE 404 Query: 658 WFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKS 717 + LK + D P+ ++ + D A+++D + + + + ++ Sbjct: 405 YVLKIALSL--NFDKFDEPKATQGLLDDFKISNDNVLAFVNDMFEEFVSDFLPTTFISAL 462 Query: 718 YSEYREQELNYDRKRISTRTVTLNL 742 Y + E E K + R L L Sbjct: 463 YRAWCEDEG---VKPFTKREFELKL 484 >gi|116512920|ref|YP_811827.1| phage DNA polymerase [Lactococcus lactis subsp. cremoris SK11] gi|116108574|gb|ABJ73714.1| Phage DNA polymerase (ATPase domain) [Lactococcus lactis subsp. cremoris SK11] Length = 542 Score = 190 bits (482), Expect = 7e-46, Method: Composition-based stats. Identities = 66/501 (13%), Positives = 156/501 (31%), Gaps = 32/501 (6%) Query: 273 DFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYT-ADTK 331 D +++ D A + + ++I + ++ + + Sbjct: 33 DGKKVVDVAGYQDSLKDWLEQEKEIINSPDYVKANTQTLRAVRKLFFEHRNLFLSTPKED 92 Query: 332 AWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDY 391 K + + + + + ++ + E N +W Y Sbjct: 93 GKPPKSLSPLETARIIYKTLKVNKLDHQSGLLGIYNHELGIYETNENFFHRLIYWLEPSY 152 Query: 392 RRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELY 451 + +E T ++ + + + +GI + +T Q + Sbjct: 153 SQARSKEVLFKLETLAEVKQQTAEA----------HLIPVANGIFNKKTQQLEPFSPSYV 202 Query: 452 ITKSTGTPFVEGEPSQEF-----LDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIH 505 T + T + + D ++ EE++ + + + G ++ + Sbjct: 203 FTSTIATKYNAKAKAPNINGWNIDDWLNDLMSGDEELVKLLWQVISASTNGNYSYRKGVW 262 Query: 506 IRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIIS 565 + G G GK T +LI G + V + +A + +L +++G +I Sbjct: 263 LVGKGNDGKGTFQSLIMNLIGRENVASVKAEQFAE---------RFALSQVVGKTCIIGD 313 Query: 566 ETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625 ++ + NA + GD + + N RN + +R Sbjct: 314 DSQVSYLDNAGNYFSVVTGDPVPIEAKGKQPTLAV-FNKLVIQSTNFLPKFRNKSNGTYR 372 Query: 626 RYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEE 685 R +++PF+K + ++ K + + ++ LK + D P+ ++ Sbjct: 373 RLLIVPFEKSFTADNDNWKIKDDYIKRKDVLEYVLKIALSL--NFDKFDEPKATKGLLDD 430 Query: 686 ERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK 745 + D A+++D D + + + L+ Y + E E K + R L Sbjct: 431 FKISNDNVLAFVNDIFDEFVSDFLPTTFLSALYRAWCEDEG---IKPFTKREFENKLPDH 487 Query: 746 GFIGGIKREKIEKEWKSKRII 766 IK + R I Sbjct: 488 IKEKWIKTTQRPNSAGFNRAI 508 >gi|125625017|ref|YP_001033500.1| putative DNA primase [Lactococcus lactis subsp. cremoris MG1363] gi|124493825|emb|CAL98818.1| putative Dna Primase [Lactococcus lactis subsp. cremoris MG1363] gi|300071817|gb|ADJ61217.1| putative DNA primase [Lactococcus lactis subsp. cremoris NZ9000] Length = 542 Score = 190 bits (481), Expect = 1e-45, Method: Composition-based stats. Identities = 66/501 (13%), Positives = 155/501 (30%), Gaps = 32/501 (6%) Query: 273 DFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYT-ADTK 331 D +++ D A + + ++I + ++ + + Sbjct: 33 DGKKVVDVAGYQDSLKDWLEQEKEIINSPDYVKANTQTLRAVRKLFFEHRNLFLSTPKED 92 Query: 332 AWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDY 391 K + + + + ++ + E N +W Y Sbjct: 93 GKPPKSLSPLETARIIYKTLKVIKLDHQSGLLGIYNHELGIYETNENFFHRLIYWLEPSY 152 Query: 392 RRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELY 451 + +E T ++ + + + +GI + +T Q + Sbjct: 153 SQARSKEVLFKLETLAEVKQQTAEA----------HLIPVANGIFNKKTQQLEPFSPSYV 202 Query: 452 ITKSTGTPFVEGEPSQEF-----LDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIH 505 T + T + + D ++ EE++ + + + G ++ + Sbjct: 203 FTSTIATKYNAKAKAPNINGWNIDDWLNDLMSGDEELVKLLWQVISASTNGNYSYRKGVW 262 Query: 506 IRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIIS 565 + G G GK T +LI G + V + +A + +L +++G +I Sbjct: 263 LVGKGNDGKGTFQSLIMNLIGRENVASVKAEQFAE---------RFALSQVVGKTCIIGD 313 Query: 566 ETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625 ++ + NA + GD + + N RN + +R Sbjct: 314 DSQVSYLDNAGNYFSVVTGDPVPIEAKGKQPTLAV-FNKLVIQSTNFLPKFRNKSNGTYR 372 Query: 626 RYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEE 685 R +++PF+K + ++ K + + ++ LK + D P+ ++ Sbjct: 373 RLLIVPFEKSFTADNDNWKIKDDYIKRKDVLEYVLKIALSL--NFDKFDEPKATKGLLDD 430 Query: 686 ERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK 745 + D A+++D D + + + L+ Y + E E K + R L Sbjct: 431 FKISNDNVLAFVNDIFDEFVSDFLPTTFLSALYRAWCEDEG---IKPFTKREFENKLPDH 487 Query: 746 GFIGGIKREKIEKEWKSKRII 766 IK + R I Sbjct: 488 IKEKWIKTTQRPNSAGFNRAI 508 >gi|258511071|ref|YP_003184505.1| DNA primase small subunit [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477797|gb|ACV58116.1| DNA primase small subunit [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 1036 Score = 189 bits (479), Expect = 2e-45, Method: Composition-based stats. Identities = 66/394 (16%), Positives = 133/394 (33%), Gaps = 40/394 (10%) Query: 419 SDLLDSSSRFLGEQDGILDLET-----GQKVKPTKELYITKSTGTPFVEGEPSQ------ 467 ++ ++ + +G+LD+ + + I PF E Sbjct: 623 HEVWNTEP-LVPFVNGLLDMSDPFDHDWRVYDFSPRHRINWKLTIPFFENWYRTPKSWTL 681 Query: 468 -------EFLDLVSGYFESEEVMDYFTRCVGMALLGG-NKAQRFIHIRGVGGSGKSTLMN 519 + LD F +E +G L + + + G G +GKSTL+ Sbjct: 682 AMKDAEVDVLDFFRTTFPDDETRRSILEFLGYCLCRWDQSEECYAILYGPGQNGKSTLLG 741 Query: 520 LIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIK 579 ++ AFG V + S + + L + I I+ + + + +K Sbjct: 742 MLAKAFGIYAVTESVQSL---------ERNRFASASLTRAAIDIVPDMAGTGIEDTSFLK 792 Query: 580 QMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR 639 G D + A + ++ E N+ ++P ++RR ++ P + + Sbjct: 793 GWIGNDVVRAERKFKASF-EFKPQTKLIYGANELPPTKDPTHGYFRRILLYPMMERFKRQ 851 Query: 640 DASFAQKLETKYTLEAKKWF-LKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID 698 + ++L T L + L + +G ++ + L+ K+ + D +A ID Sbjct: 852 GPGWVERLRTPEALSYMCYLGLLHYRQMRREGRNITESKEMLREKDYYWRANDVVKAAID 911 Query: 699 D-CCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIE 757 + + G+ L K+ Y ++ L++ K E Sbjct: 912 EGIIEFGKEFSVPRDLLQKAMEIYAKETGR------KYPGAAKLLERLRNYAPHKIEYSR 965 Query: 758 KEWKSKRI--IKGLKLKPAFESVDDNSNIIDFKR 789 KRI G+ L A S+ + I+D R Sbjct: 966 PRRNGKRIHMWTGVTLGEAGRSLFVSREIVDLDR 999 >gi|223933202|ref|ZP_03625193.1| phage/plasmid primase, P4 family [Streptococcus suis 89/1591] gi|223898132|gb|EEF64502.1| phage/plasmid primase, P4 family [Streptococcus suis 89/1591] Length = 517 Score = 189 bits (479), Expect = 2e-45, Method: Composition-based stats. Identities = 62/356 (17%), Positives = 124/356 (34%), Gaps = 27/356 (7%) Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFL-----DLVSGYF-ES 479 RF+ ++GI D + + T + T + S D + Sbjct: 154 KRFILVKNGIFDKQLKKMSGFTHRFVAFSTIETEYDPFAESPNIDGWDVDDWLLDLMSGD 213 Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539 ++++ + + +L G ++ I G G GK T+ LI G + V + + Sbjct: 214 KDLVHLLWQVISASLNGNYSYRKSIWFVGEGNDGKGTVQQLITNIVGIRNVATLKLNQFS 273 Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA-AKIKQMTGGDCMTARLNYGNTYS 598 + +L + G ++I + I+ + + G+ + YS Sbjct: 274 E---------RFALSMIEGKTVIIGDDVQAGVYIDESSNFNSVVTGEPVLVEEKNKQPYS 324 Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKW 658 T N+ +N + +RR+++IPF K + ++ ++ K E + K++ Sbjct: 325 TV-FKKTVIQSTNELPRFKNKTNGTYRRFLIIPFRKTFSAKEDNWQIKDEYINRDDVKQY 383 Query: 659 FLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSY 718 LK P+ L EE + DT +A+ID+ ++ L Y Sbjct: 384 VLKKALEL--NFTRFSEPQATLDVLEEFKSSNDTVKAFIDEWFGTFQSERLPVRFLWWLY 441 Query: 719 SEYREQELNYDRKRISTRTVTLNLKQKG-FIGGIKREKIEKEWKSK----RIIKGL 769 E+ ++E ++ L + KR K + +K R G Sbjct: 442 QEWCKEEGITK---VAKGKFERQLIKLLPAEWEKKRAKPTRRFKPSLDVPRRYTGF 494 >gi|301300721|ref|ZP_07206906.1| phage/plasmid primase, P4 family, C-terminal domain protein [Lactobacillus salivarius ACS-116-V-Col5a] gi|300851659|gb|EFK79358.1| phage/plasmid primase, P4 family, C-terminal domain protein [Lactobacillus salivarius ACS-116-V-Col5a] Length = 444 Score = 189 bits (479), Expect = 2e-45, Method: Composition-based stats. Identities = 47/343 (13%), Positives = 128/343 (37%), Gaps = 22/343 (6%) Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY-FESEEV 482 + F+ ++G+ +++ + T + IT + +++ ++ Sbjct: 107 QDANFIAFKNGVYNIKEKRLEPYTPNIIITNKIDYDYGPSAKCSLVDEIMDKLACHQRDL 166 Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542 ++ + N+ +F + G G +GKST +++I+ G++ + + + S++ Q Sbjct: 167 VNLLYEIIAYTFYRRNELGKFFILTGSGANGKSTYLDMIRTLLGSKNISSLDVSELDQ-- 224 Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602 L G I + +++ + + +K++ G+ +TA + + Sbjct: 225 -------RFKTSELAGKLANIGDDISDSYIKDTSILKKLVTGEAVTAERKGLDPFM-FEN 276 Query: 603 SFTPFIVPNKHLFV--RNPDDAWWRRYIVIPFDKPIANRDASFA--QKLETKYTLEAKKW 658 N + + A RR +++PF+ + +D + K + + K Sbjct: 277 YSKLLFSANSIPRLGKGSDTKALNRRMVIVPFNATFSPKDPDYKPYIKYDLRQENAIKYL 336 Query: 659 FLKGVKAYIS--KGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAK 716 +K ++A + E+ + E+ + + DD + + L + + + K Sbjct: 337 IVKSIEALHRILENNGFTKSELADRELEKYEYENNPILGFFDD-LEETDYLNQPTKDVYK 395 Query: 717 SYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKE 759 Y+EY + +S + + + F K ++ + Sbjct: 396 LYTEYCLRNG---LNSVSNISFSRQITSH-FNLTSKSSRVNGK 434 >gi|254366072|ref|ZP_04982117.1| possible phiRv1 phage protein [Mycobacterium tuberculosis str. Haarlem] gi|134151585|gb|EBA43630.1| possible phiRv1 phage protein [Mycobacterium tuberculosis str. Haarlem] Length = 248 Score = 188 bits (478), Expect = 2e-45, Method: Composition-based stats. Identities = 62/256 (24%), Positives = 105/256 (41%), Gaps = 17/256 (6%) Query: 516 TLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA 575 I+YA G+ + + G+ + L G R V +SE+ ++ + Sbjct: 1 MFDKAIRYALGDYACTAEPDLFMHRENAHPTGE-----MDLRGVRWVAVSESEKDRRLAE 55 Query: 576 AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP 635 + IK++TGGD + AR + E S TP ++ N V D A WRR V+PF+ Sbjct: 56 STIKRLTGGDTIRARKM-RQDFVEFTPSHTPLLITNHLPRVPGDDTAIWRRIRVVPFEVV 114 Query: 636 IA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTY 693 I +D +L+ W + G Y GL P+ L A R+ +DT Sbjct: 115 IPADEQDRELDARLQL-EADSILSWAVAGWSDYQRIGL--SQPDAVLAATSNYREDSDTI 171 Query: 694 QAWI-DDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIK 752 + +I D+C L + L +++ +R QE IS + +L G+ K Sbjct: 172 KRFIDDECVTSSPVLKATTTHLFEAWQRWRVQEG---VPEISRKAFGQSLDTHGYPVTDK 228 Query: 753 REKIEKEWKSKRIIKG 768 + W++ ++G Sbjct: 229 AR--DGRWRAGIAVRG 242 >gi|83309457|ref|YP_419721.1| hypothetical protein amb0358 [Magnetospirillum magneticum AMB-1] gi|82944298|dbj|BAE49162.1| hypothetical protein [Magnetospirillum magneticum AMB-1] Length = 757 Score = 188 bits (478), Expect = 2e-45, Method: Composition-based stats. Identities = 65/298 (21%), Positives = 112/298 (37%), Gaps = 30/298 (10%) Query: 7 KEQAKQAIHNGFKLIPLRLGDKRPQRLGK--------WE---EQLLS---SEKIDKLPAC 52 + + NG+ IP+ G K+P R W ++ + E P Sbjct: 9 ARFGARLVDNGYPAIPIWPGTKKPGRFQAGAWCDYPAWTRHCDRPTTLIEVETWATWPDA 68 Query: 53 GFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHG-TPIVRIGQKPKILIPFRMNKE 111 G CG L DID D A+ + + G TP++RIG+ PK L+ +R + Sbjct: 69 AIGLACGT----LVGIDIDVLDPDIAHRLERLARDMLGDTPLLRIGKAPKRLLVYRADVP 124 Query: 112 GIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTW-TTPPHRFKVEDTPLLSEEDV 170 K+ L+IL G+ FVA+ IHP T + Y W P ++D P+++EE V Sbjct: 125 FSGPKRAP------LEILAQGRQFVAFAIHPDTGQSYVWPEDSPLTVALDDLPVVTEESV 178 Query: 171 EYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWI 230 + ++ + PS + + + ++ T + + L+ + +D W+ Sbjct: 179 RQWLDAAIALLPDDLRPATLVSPSVSMPSTSPQRGTLAAVRSALAHI--PNADLEYDSWV 236 Query: 231 PVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFT 288 + MA+ G + WS + W +F IG Sbjct: 237 RIGMAMKGAI--GEDGASLFAAWSAMSAKDVPAATAKAWASFRPTTIGAGTLYHHAME 292 >gi|160943486|ref|ZP_02090719.1| hypothetical protein FAEPRAM212_00977 [Faecalibacterium prausnitzii M21/2] gi|158445165|gb|EDP22168.1| hypothetical protein FAEPRAM212_00977 [Faecalibacterium prausnitzii M21/2] Length = 448 Score = 188 bits (476), Expect = 4e-45, Method: Composition-based stats. Identities = 78/443 (17%), Positives = 152/443 (34%), Gaps = 33/443 (7%) Query: 343 IWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKA 402 W + K+ + + K + L ++ D N + ++ ++ A Sbjct: 26 PWVDSKGKVRETAYCQYLLEKHPMMCLKQKLFDQNGEVDEDALLYEVHSDLRDFVLDNLA 85 Query: 403 KSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVE 462 K Q L+A I + T + + Q+G L+ V ++ + Sbjct: 86 KKEKQVLDALRIETYTPE-WKPQLDRIHLQNGTYFLDERGFVP--EKELCLNRLPVEYQP 142 Query: 463 GEPSQ-EFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLI 521 P+ ++L+ + G E + +G L+ KAQ+ + + G GG GKS + L+ Sbjct: 143 DAPAPTKWLEFLDGLL-IPEDILTLQEYLGYLLIPSTKAQKMLVMTGKGGEGKSRIGLLL 201 Query: 522 KYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM 581 K FG + I NR L +++ + N IK + Sbjct: 202 KKLFGE-ASHSESILRIETNRFAS--------ANLEYKLVMVDDDLNMVALPETRNIKSI 252 Query: 582 -TGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD 640 T D + + + D +WRR I+I + +RD Sbjct: 253 VTAEDRLCIERKNKQAVQGLLYVRFICFGNGNLVAAHDDSDGFWRRQILI----TVKDRD 308 Query: 641 A-----SFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQA 695 F + ++ W L+G+ ++ I E ++ E +D Sbjct: 309 PARVDNPFLIEELSEERPGILLWMLEGLHRLLANRYQFTISERSIQNLEAAMADSDNLTQ 368 Query: 696 WI--DDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTL-NLKQKGFIGGIK 752 ++ + E S L ++Y+++ E L + + + LK G G Sbjct: 369 FMQATAYVRFKPDTEERSTYLYRAYTKWCEDNLES---PVPQKKFSQFLLKNAGKYGLTF 425 Query: 753 REKIEKEWKSKRIIKGLKLKPAF 775 + IE ++ R +G+ + PAF Sbjct: 426 SKHIEGKY---RGFRGVCVHPAF 445 >gi|313895672|ref|ZP_07829228.1| phage/plasmid primase, P4 family, C-terminal domain protein [Selenomonas sp. oral taxon 137 str. F0430] gi|312975798|gb|EFR41257.1| phage/plasmid primase, P4 family, C-terminal domain protein [Selenomonas sp. oral taxon 137 str. F0430] Length = 759 Score = 188 bits (476), Expect = 4e-45, Method: Composition-based stats. Identities = 99/742 (13%), Positives = 211/742 (28%), Gaps = 103/742 (13%) Query: 34 GKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPI 93 W + + G GF+ + +Y DID +DE A Sbjct: 44 ASWVTFEEARRAAEASSYGGVGFII---PKGMYFLDIDHRDEADAMVQLQ-IRRHDTYAE 99 Query: 94 VRIGQKPKILIPF------RMNKEGIKKKKTT-------ESTQGHLDILGCG---QYFVA 137 + + + R+ K K K ++ +++ G ++ V Sbjct: 100 KSVS--GNGIHIYGCCDYDRIPKTKDKDGKEKLDPKFYVKNPHNGMELYVGGLTNRFAVF 157 Query: 138 YNIHPKTKKEYTWTTPPHRFKVEDTP--LLSEEDVEYLFKFFQEITVPLVKDKKSIIPSK 195 + D P +E + L K + K+ + Sbjct: 158 TGDV-----------------LHDVPFADGTEAVLTTLRKDMLRKQPVNYRPKEDGDRAV 200 Query: 196 TWTNNNNRQYTNREITAFLSCFGE--EFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRW 253 + R+ N A L G+ E+ + S + + ++ + R Sbjct: 201 FDIVCSLRKAKNGGKFARLFDRGDISEYGSASEADAALCALIAFRTGNDAALIDAVFR-- 258 Query: 254 SKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNK 313 + KW+ D++ + ++ + + Sbjct: 259 -------KSALYRRKWEREDYKAATIRVGVEACHGVFHASVMDHPDFIHFNAKGNPVISC 311 Query: 314 AMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEP 373 + Y + + Y + + Y++ + ++ A M +K + E Sbjct: 312 PALADYIRQNLHYIFVRDS--ARHGVLRYVYEGGVYRLYADDM-LKGLIKNCIASYDSEM 368 Query: 374 EDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQD 433 + K ++ R I L++ + Q+ Sbjct: 369 IEMRKVDETFRILTTDLN------------------------YIKDSDLNADEDIINFQN 404 Query: 434 GILDLETGQKVKPTKELYITKSTGTPFVEGE-PSQEFLDLVSGYF-ESEEVMDYFTRCVG 491 GIL L T + + +L T + + + + F + E+ +G Sbjct: 405 GILHLSTMELTEHASDLLSTIQIPCAWSQEDLATPVFDRFMQTLTDGDSEIQQLLLEFIG 464 Query: 492 MALLGGNKAQ--RFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549 L + + + + G G +GKS L L++ G + + +I A Sbjct: 465 ACLSNVKGWRMKKALFMYGAGDTGKSRLKCLVEQLLGRGNYVGIDLREIE---------A 515 Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609 + G R+ S+ + K+ TGGD + A N + E + + Sbjct: 516 RFGTGLIYGMRLAGSSDMSFITVDELKTFKKCTGGDSIFAEFKGQNGF-EFTFNGLFWFC 574 Query: 610 PNKHLFVRNPDDAWW--RRYIVIPFDKPIA-NRDASFAQKLETKYTLEAKKWFLKGVKAY 666 N+ DD W R + + I ++ F + + + ++A Sbjct: 575 MNQLPRFGG-DDGQWVHDRIMQVHCKNAIPIDKQDRFLGEKLYAERDGIVRKAVHALRAV 633 Query: 667 ISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENL----WEESHSLAKSYSEYR 722 I G P+ L A+EE ++ A+ +C + + + Y + Sbjct: 634 IQNGYRFTEPQSVLAAREEYMVENNSVLAFHAECMMKRPEGVKCSEVTTGQVYRIYQTWC 693 Query: 723 EQELNYDRKRISTRTVTLNLKQ 744 N + R L + Sbjct: 694 RLNNNG--YAKTAREFRTTLAR 713 >gi|307591581|ref|YP_003900380.1| primase P4 [Cyanothece sp. PCC 7822] gi|306986435|gb|ADN18314.1| primase P4 [Cyanothece sp. PCC 7822] Length = 1006 Score = 188 bits (476), Expect = 4e-45, Method: Composition-based stats. Identities = 77/506 (15%), Positives = 160/506 (31%), Gaps = 60/506 (11%) Query: 287 FTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSL 346 + + +Y Y W + +N++ Sbjct: 322 HNQPSEEEDNSNEQPSTGLPKQSRLVAQIQELYNDKF-KYNDQANTWLEYQENSLLH--- 377 Query: 347 TLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTA 406 + N + +N R +S Sbjct: 378 ------------------------DGSWVPVSNLRIQTQIYNILQARGYEFNSSYLNGVE 413 Query: 407 QSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVE-GEP 465 L+ S+ +G D + +L TG+ + + Y+T PF Sbjct: 414 DLLKKALYI----KEWPSTKDLVGFSDCVYELSTGKTREHSPHNYLTWVLPRPFNPLSRS 469 Query: 466 SQEFLDLVSGYFESEEVMDYFTR-CVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524 + ++ ++ + L Q+F+H+ G GGSGKS+ MNL+ Sbjct: 470 WTTIDEWLTEATQNNQTHKQILICYAAAVLRQRADLQKFLHLIGTGGSGKSSFMNLLVAL 529 Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGG 584 G Q I+ + + + + G + I + + + N + K+MTG Sbjct: 530 VGQQNTISLDFPSLNEKDA---------IAEAFGKALAIFPDQDSAGK-NLSNFKKMTGQ 579 Query: 585 DCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFA 644 D + R Y + +S + N +F RR +++PF+ +A+ + Sbjct: 580 DLLRGRRLYKDGFS-FKFGGMCVLSSNHPIFHAGSGRWLTRRVLMVPFNLAVADGNVRNL 638 Query: 645 QKLETKYTLEAKKWFLKGVKAYISKGLD-VDIPEVCLKAKEEERQGTDTYQAWIDD---- 699 +K + L I L ++ +V E ++ +D +W++D Sbjct: 639 EKEFEPELSAFTSYLLSIPTEEIEATLKGLNKKQVISSTLWESQKRSDGLASWVNDEIIF 698 Query: 700 ----CCDIGENLWEESHSLA-----KSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGG 750 IG N E + + Y R+ ++ + NL + G Sbjct: 699 DCTAKTQIGSNAREWNDEDYNPLKSTLFGSYCHHIRRSGRQPLTKDNFSANLIEL-LKGT 757 Query: 751 IKREKIEKEWKSKRIIKGLKLKPAFE 776 +K++ +++ R + G++L+ A + Sbjct: 758 LKKDVDKRKTNQGRFLMGVRLRTAQD 783 >gi|218291388|ref|ZP_03495331.1| ATPase-like protein [Alicyclobacillus acidocaldarius LAA1] gi|218238743|gb|EED05959.1| ATPase-like protein [Alicyclobacillus acidocaldarius LAA1] Length = 1039 Score = 188 bits (476), Expect = 4e-45, Method: Composition-based stats. Identities = 83/552 (15%), Positives = 178/552 (32%), Gaps = 58/552 (10%) Query: 275 EEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDA----YNKAMFSIYKKGHFLYTADT 330 E A + L + +S+ ++ KK HF+Y + Sbjct: 472 AEDWVEAPEDVIVHEPVAWTEDLSEAPEEDTNWSERPFTNRTAREWARVKKSHFVYVDEE 531 Query: 331 KAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWF--- 387 K ++ + TL K ++ F S + P D+ ++ R + Sbjct: 532 KG----KEHLLLRRMATLIKKDFNLQYFFQSCYYYDGTIYTTPTDDGEDEAVIRDFILEA 587 Query: 388 ------NTDYRRQNVEENSKAKSTAQSLEAGSIFSIT-SDLLDSSSRFLGEQDGILDLET 440 + E + Q S+ SI ++ ++ + +G+LD+ Sbjct: 588 LETIKPTWATWSRAEEIKRMLINNVQRDRNHSVESIRVHEVWNTEP-LVPFANGLLDMSD 646 Query: 441 -----GQKVKPTKELYITKSTGTPFVEGEPSQ-------------EFLDLVSGYFESEEV 482 + + I PF E + LD F +E Sbjct: 647 PFDHDWRVYDFSPRHRINWKLTIPFFENWNRTPKSWTLAMKDAEVDVLDFFRTTFPDDET 706 Query: 483 MDYFTRCVGMALLGG-NKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQN 541 +G L + + + G G +GKSTL+ ++ AFG V + S Sbjct: 707 RRSILEFLGYCLCRWDQSEECYAILYGPGQNGKSTLLGMLAKAFGVYAVTESVQSL---- 762 Query: 542 RPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESP 601 + + L + I I+ + + + +K G D + A + ++ E Sbjct: 763 -----ERNRFASACLTRAAIDIVPDMAGTGIEDTSFLKGWIGNDVVRAERKFKASF-EFK 816 Query: 602 ASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWF-L 660 N+ ++P ++RR ++ P + + + ++L T L + L Sbjct: 817 PQTKLIYGANELPPTKDPTHGYFRRILLYPMMERFKRQGPGWVERLRTPEALSYMCYLGL 876 Query: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD-CCDIGENLWEESHSLAKSYS 719 + +G ++ + L+ K+ + D +A ID+ ++G++ L K+ Sbjct: 877 LHYRQMRREGRNITESKEMLREKDYYWRANDVVKAAIDEGIIELGKDYIVPRDLLQKAME 936 Query: 720 EYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKE--WKSKRIIKGLKLKPAFES 777 Y ++ L++ K E K + G++L A Sbjct: 937 IYAKETGR------KYPGAAKLLERLRNYAPHKIEYSRPRLNGKPTHVWTGVRLGEAGRM 990 Query: 778 VDDNSNIIDFKR 789 + + +++ + Sbjct: 991 LLVSREVVNLDQ 1002 >gi|220925612|ref|YP_002500914.1| P4 family phage/plasmid primase [Methylobacterium nodulans ORS 2060] gi|219950219|gb|ACL60611.1| phage/plasmid primase, P4 family [Methylobacterium nodulans ORS 2060] Length = 978 Score = 187 bits (474), Expect = 7e-45, Method: Composition-based stats. Identities = 62/444 (13%), Positives = 137/444 (30%), Gaps = 41/444 (9%) Query: 357 NFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFS 416 ++ K+ + + + S + + + EA Sbjct: 443 EAILFTKKTAWRYRDGIWAMETDGLSS---WLNVQIEMACAALNIVSTLKLISEARGWIQ 499 Query: 417 ITSDLL-DSSSR----FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLD 471 +L D + + G++D TG+ E Y T T F +L Sbjct: 500 RRPELWRDEIPFDRHGKVPCRSGLVDPRTGEIEPIRPEHYCTWVVDTEFDPAARCPLWLQ 559 Query: 472 LVSGYFES------EEVMDYFTRCVGMALLG--GNKAQRFIHIRGVGGSGKSTLMNLIKY 523 ++ F +E++ +G A++ + + + + G GKS L+ ++ Sbjct: 560 MLDDVFPDRTATVRKEIVATLQEVLGCAMVDVKSRQLTKALVLVGGSNVGKSGLLEVLGG 619 Query: 524 AFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTG 583 FG+ + A S + + + + V+ ++ A+ +K + Sbjct: 620 MFGDDPISVALDSL---------EGTHGKMPFVRRAPWVLHEAFDQRKWHFASGVKAIIT 670 Query: 584 GDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASF 643 GD + + G F N + A R IVI + Sbjct: 671 GDPVEINVKNG-PIISGRVRAPIFWGTNYPPQFKESTRAIVNRMIVIHCRNVFDDHRLVG 729 Query: 644 AQKL-------------ETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGT 690 +L K W L+G++ + +G + +P + + + Sbjct: 730 VAQLASERGYDKPSSIVLAKERAGVLNWALEGLRRALDRG-SIAVPAEVRENADAIHKDA 788 Query: 691 DTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGG 750 + +ID+C + + ++S + + DR S ++ + G Sbjct: 789 NIVAGFIDECIEWDHEMRVPVPDFCAAFSVWWAENKGEDRSIPSNDSIGRAVTALGNERI 848 Query: 751 IKREKIEKEWKSKRIIKGLKLKPA 774 + ++ R + G+ L PA Sbjct: 849 GLHARETRDMHR-RYLCGIALNPA 871 >gi|13095886|ref|NP_076775.1| helicase [Lactococcus phage bIL310] gi|15672011|ref|NP_266185.1| DNA primase [Lactococcus lactis subsp. lactis Il1403] gi|12722868|gb|AAK04127.1|AE006242_6 prophage ps1 protein 05, DNA primase [Lactococcus lactis subsp. lactis Il1403] gi|12831075|gb|AAK08428.1|AF323671_24 helicase [Lactococcus phage bIL310] gi|326405626|gb|ADZ62697.1| phage DNA primase [Lactococcus lactis subsp. lactis CV56] Length = 542 Score = 187 bits (474), Expect = 8e-45, Method: Composition-based stats. Identities = 47/346 (13%), Positives = 122/346 (35%), Gaps = 23/346 (6%) Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF-----LDLVSGYF- 477 + + + +GI + +T Q + + T + T + + + Sbjct: 175 TEAHLIPVANGIFNKKTQQLEPFSPKYVFTSTIATKYNDKAKVPNINGWNVDGWLLDLMS 234 Query: 478 ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537 +E++ + + + G ++ + + G G GK T +LI G + V + +A Sbjct: 235 GDKELVSLLWQIISASTNGNYSYRKGVWLVGKGNDGKGTFQSLIMNLIGRENVASVKAEQ 294 Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597 + +L +++G +I ++ + NA + GD + Sbjct: 295 FAE---------RFALSQVVGKTCIIGDDSQVSYLDNAGNYFSVVTGDPVPIEAKGKQPT 345 Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKK 657 + N RN + +RR +++PF+K + + K + + + Sbjct: 346 LAV-FNKLVIQSTNFLPKFRNKSNGTYRRLLIVPFEKSFTADNDDWKIKDDYIKRKDVLE 404 Query: 658 WFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKS 717 + LK + + D P+ ++ + D A+++D + + + + ++ Sbjct: 405 YVLKIALSLNFE--KFDEPKATQGLLDDFKISNDNVLAFVNDMFEEFVSDFLPTAFISAL 462 Query: 718 YSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSK 763 Y + E E K + R L ++ ++ +++ + Sbjct: 463 YRAWCEDEG---VKPFTKREFENKLPD--YVKDQWKKTVQRPNSAG 503 >gi|268610895|ref|ZP_06144622.1| primase, putative [Ruminococcus flavefaciens FD-1] Length = 446 Score = 187 bits (473), Expect = 8e-45, Method: Composition-based stats. Identities = 69/388 (17%), Positives = 132/388 (34%), Gaps = 24/388 (6%) Query: 393 RQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYI 452 R V+ + A+ + E S+ L + +G+L++ TG+ + Sbjct: 65 RFKVKSTNIAEVAKRLSEDISLKIDIEGALKRQQYLINFMNGVLNILTGEFTTDRNKWIF 124 Query: 453 TKSTGTPFVEGEP---SQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGV 509 ++E F+ + E D R +G L + + + G Sbjct: 125 DYVFNVNYIEHCTERECPNFMKFIKTSAGIENK-DCIFRSIGFGLSSLTDVKCAVFLIGE 183 Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569 GKSTL+ +I+ A V N + I+L G ++ I + + Sbjct: 184 SDGGKSTLLRIIESAVTPGLVSNISFQQL---------GDPHYTIQLQGKKLNISYDNSS 234 Query: 570 NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIV 629 N K + + + R N + + F N+ ++PD A +RR ++ Sbjct: 235 KALDNEHIFKSIVSCEKIEGRALRENP-VQFVPTAKLFFASNRPYVFKHPDQALYRRMVI 293 Query: 630 IPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEER 687 IPF+ I +D KL + +K +I G D + Sbjct: 294 IPFEYSIPPDKQDKHLLDKL-MDERDAIFSRAARSLKEFIESGYDFKMSSKGEAYLRSRI 352 Query: 688 QGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQE-LNYDRKRISTRTVTLNLKQKG 746 + + +++D + E L ++Y + + L+ D K +V Sbjct: 353 TALHSVEEFLNDRTTLDEKGSVPVSVLYEAYKIWCNENALDADDKSEFKESV------LS 406 Query: 747 FIGGIKREKIEKEWKSKRIIKGLKLKPA 774 + I +K+ K KG++LK A Sbjct: 407 YSPSIDFKKVGPRNSRKIGFKGIRLKTA 434 >gi|125622911|ref|YP_001031394.1| putative DNA primase [Lactococcus lactis subsp. cremoris MG1363] gi|124491719|emb|CAL96638.1| Putative DNA primase [Lactococcus lactis subsp. cremoris MG1363] gi|300069649|gb|ADJ59049.1| putative DNA primase [Lactococcus lactis subsp. cremoris NZ9000] Length = 542 Score = 187 bits (473), Expect = 8e-45, Method: Composition-based stats. Identities = 46/346 (13%), Positives = 119/346 (34%), Gaps = 23/346 (6%) Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF-----LDLVSGYF- 477 + + + +GI + +T Q + + T + T + + + Sbjct: 175 TEAHLIPVANGIFNKKTQQLEPFSPKYVFTSTIATKYNDKAKVPNINGWNVDGWLLDLMS 234 Query: 478 ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537 +E++ + + + G ++ + G G GK T +LI G + V + +A Sbjct: 235 GDKELVSLLWQIISASTNGNYSYRKGAWLVGKGNDGKGTFQSLIMNLIGRENVASVKAEQ 294 Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597 + L +++G +I ++ + NA + GD + Sbjct: 295 FAE---------RFVLSQVVGKTCIIGDDSQVSYLDNAGNYFSVVTGDPVPIEAKGKQPT 345 Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKK 657 + N RN + +RR +++PF+K + + K + + + Sbjct: 346 LAV-FNKLVIQSTNFLPKFRNKSNGTYRRLLIVPFEKSFTADNDDWKIKDDYIKRTDVLE 404 Query: 658 WFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKS 717 + LK + + P+ ++ + D A+++D + + + + ++ Sbjct: 405 YVLKIALSL--NFDKFNEPKATQGLLDDFKISNDNVLAFVNDMFEEFVSDFLPTAFISAL 462 Query: 718 YSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSK 763 Y + E E K + R L ++ ++ +++ + Sbjct: 463 YRAWCEDEG---VKPFTKREFENKLPD--YVKDQWKKTVQRPNSAG 503 >gi|257437684|ref|ZP_05613439.1| phage/plasmid primase, P4 family domain protein [Faecalibacterium prausnitzii A2-165] gi|257199991|gb|EEU98275.1| phage/plasmid primase, P4 family domain protein [Faecalibacterium prausnitzii A2-165] Length = 448 Score = 186 bits (472), Expect = 1e-44, Method: Composition-based stats. Identities = 78/443 (17%), Positives = 152/443 (34%), Gaps = 33/443 (7%) Query: 343 IWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKA 402 W + K+ + + K + L ++ D N + ++ ++ A Sbjct: 26 PWVDSKGKVRETAYCQYLLEKHPMMCLKQKLFDQNGEVDEDALLYEVHSDLRDFVLDNLA 85 Query: 403 KSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVE 462 K Q L+A I + T + + Q+G L+ V ++ + Sbjct: 86 KKEKQVLDALRIETYTPE-WKPQLDRIHLQNGTYFLDERGFVP--EKELCLNRLPVEYQP 142 Query: 463 GEPSQ-EFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLI 521 P+ ++L+ + G E + +G L+ KAQ+ + + G GG GKS + L+ Sbjct: 143 DAPAPTKWLEFLDGLL-IPEDILTLQEYLGYLLIPSTKAQKMLVMTGKGGEGKSRIGLLL 201 Query: 522 KYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM 581 K FG + I NR L +++ + N IK + Sbjct: 202 KKLFGE-ASHSESILRIETNRFAS--------ANLEYKLVMVDDDLNMVALPETRNIKSI 252 Query: 582 -TGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD 640 T D + + + D +WRR I+I + +RD Sbjct: 253 VTAEDRLCIERKNKQAVQGLLYVRFICFGNGNLVAAHDDSDGFWRRQILI----TVKDRD 308 Query: 641 A-----SFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQA 695 F + ++ W L+G+ ++ I E ++ E +D Sbjct: 309 PARVDNPFLIEELSEERPGILLWMLEGLHRLLANRYQFTISERSIQNLEAAMADSDNLTQ 368 Query: 696 WI--DDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTL-NLKQKGFIGGIK 752 ++ + E S L ++Y+++ E L + + + LK G G Sbjct: 369 FMQASAYVRFKPDTEERSTYLYRAYTKWCEDNLES---PVPQKKFSQFLLKNAGKYGLTF 425 Query: 753 REKIEKEWKSKRIIKGLKLKPAF 775 + IE ++ R +G+ + PAF Sbjct: 426 SKHIEGKY---RGFRGVCVHPAF 445 >gi|94266128|ref|ZP_01289842.1| Phage/plasmid primase P4-like [delta proteobacterium MLMS-1] gi|93453303|gb|EAT03746.1| Phage/plasmid primase P4-like [delta proteobacterium MLMS-1] Length = 925 Score = 186 bits (471), Expect = 1e-44, Method: Composition-based stats. Identities = 76/377 (20%), Positives = 133/377 (35%), Gaps = 35/377 (9%) Query: 418 TSDLLDSSSRF-LGEQDGILDLETGQKVKPTKELYITKSTGTPFVE-GEPSQEFLDLVSG 475 T+D + L +G L +E G+ L + F P +F + Sbjct: 568 TNDTFFKDAHVGLATPEGFLKIEAGKIETVPLVLGHRQRIKIGFAPEDAPIPQFERFLKE 627 Query: 476 YFESE------EVMDYFTRCVGMALLG-GNKAQRFIHIRGV-GGSGKSTLMNLIKYAFGN 527 F+SE + G L G K Q+ G SGK T+ ++ Sbjct: 628 TFQSEVPGEEAQQRGLLQEIAGAILTGCMPKFQKAAMFYDPFGRSGKGTMERFLRQLVPA 687 Query: 528 QYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCM 587 +V + + + L G+R+ ++ E E+ I AA K +TGGD + Sbjct: 688 SFVTAVSPFNWDKE---------YYVASLAGARLNVVGELPESKPIPAAAFKTVTGGDVL 738 Query: 588 TARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR----DASF 643 T R + N + + +A++ R++++ F D Sbjct: 739 TGRHPNFRP-ISFTNEAAHLFMSNHFITTSDHSEAFFTRWLLVEFPNSRLKSGLPIDPDL 797 Query: 644 AQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDI 703 A+++ W +KG + +++G V + R+ T++ + +I D C++ Sbjct: 798 AERIIADELPGIAHWSMKGARRLLAQG-KFSGSTVHDRLMASWRRTTNSLEEFIHDVCEL 856 Query: 704 GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSK 763 + E L K Y + + RK S V L +G K E Sbjct: 857 APDAHERRSELYKGYKYWCGENG---RKPFSKAKVKDLLAHNMALGIGHTVKDGYE---- 909 Query: 764 RIIKGLKLK--PAFESV 778 I +G+KLK P F V Sbjct: 910 -IFRGIKLKETPEFTKV 925 >gi|313112558|ref|ZP_07798221.1| phage/plasmid primase, P4 family protein [Faecalibacterium cf. prausnitzii KLE1255] gi|295103823|emb|CBL01367.1| phage/plasmid primase, P4 family, C-terminal domain [Faecalibacterium prausnitzii SL3/3] gi|310625124|gb|EFQ08416.1| phage/plasmid primase, P4 family protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 448 Score = 186 bits (471), Expect = 2e-44, Method: Composition-based stats. Identities = 78/443 (17%), Positives = 152/443 (34%), Gaps = 33/443 (7%) Query: 343 IWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKA 402 W + K+ + + K + L ++ D N + ++ ++ A Sbjct: 26 PWVDSKGKVRETAYCQYLLEKHPMMCLKQKLFDQNGEVDEDALLYEVHSDLRDFVLDNLA 85 Query: 403 KSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVE 462 K Q L+A I + T + + Q+G L+ V ++ + Sbjct: 86 KKEKQVLDALRIETYTPE-WKPQLDRIHLQNGTYFLDERGFVP--EKELCLNRLPVEYQP 142 Query: 463 GEPSQ-EFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLI 521 P+ ++L+ + G E + +G L+ KAQ+ + + G GG GKS + L+ Sbjct: 143 DAPAPTKWLEFLDGLL-IPEDILTLQEYLGYLLIPSTKAQKMLVMTGKGGEGKSRIGLLL 201 Query: 522 KYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM 581 K FG + I NR L +++ + N IK + Sbjct: 202 KKLFGE-ASHSESILRIETNRFAS--------ANLEYKLVMVDDDLNMVALPETRNIKSI 252 Query: 582 -TGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD 640 T D + + + D +WRR I+I + +RD Sbjct: 253 VTAEDRLCIERKNKQAVQGLLYVRFICFGNGNLVAAHDDSDGFWRRQILI----TVKDRD 308 Query: 641 A-----SFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQA 695 F + ++ W L+G+ ++ I E ++ E +D Sbjct: 309 PARVDNPFLIEELSEERPGILLWMLEGLHRLLANRYQFTISERSIQNLEAAMADSDNLTQ 368 Query: 696 WI--DDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTL-NLKQKGFIGGIK 752 ++ + E S L ++Y+++ E L + + + LK G G Sbjct: 369 FMQATAYVRFKPDTEERSTYLYRAYTKWCEDNLES---PVPQKKFSQFLLKNAGKYGLTF 425 Query: 753 REKIEKEWKSKRIIKGLKLKPAF 775 + IE ++ R +G+ + PAF Sbjct: 426 SKHIEGKY---RGFRGVCVHPAF 445 >gi|215488939|ref|YP_002331370.1| predicted DNA primase [Escherichia coli O127:H6 str. E2348/69] gi|215267011|emb|CAS11456.1| predicted DNA primase [Escherichia coli O127:H6 str. E2348/69] Length = 804 Score = 186 bits (471), Expect = 2e-44, Method: Composition-based stats. Identities = 88/685 (12%), Positives = 181/685 (26%), Gaps = 93/685 (13%) Query: 111 EGIKKKKTTESTQGHLDILGCGQYFVAYNIH-PKTKKEYTWTTPPHRFKVEDTPLLSEED 169 + KK + Y + P T + V P Sbjct: 155 ASLADKKARWENGSDYVVFDRNVYGAQSYCYCPHTGAKAQNYAG-AVIDVGALPE--PAQ 211 Query: 170 VEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEW 229 + I + + ++ + L + W Sbjct: 212 PPAKAAKSKAKKQRQRDAAAVIDADFDDLSAGPDNFLIADLRSALWFPSMLQKAWDNGAW 271 Query: 230 IPVVMAVHHE--TRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTF 287 I + T +++ WS + + + + D + A ++++ Sbjct: 272 IEQGYRLASLKGTDFEDDARQLWVEWSLTAA---DGWPDEELDEVAAQRWNGLAPDKTSY 328 Query: 288 TSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLT 347 ++F R AY + M + +G L K D N VY ++ Sbjct: 329 KAIFTDAQAQGWNNPGKWRAKAAYIEKM-APSTRGELLAQYYGNVCLKADGNMVYHYTGQ 387 Query: 348 LDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQ 407 + + A +++ R + KS + Sbjct: 388 VWEHIA-------------------------DAELRRQLSQIFKDNGVPFTPYEVKSAIE 422 Query: 408 SLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-- 465 ++ ++ +G +G+ DLE + + ++T G + + Sbjct: 423 AMGMLLPLMG-----ETPRNLIGFANGVYDLEAQRFRPHCPDDWLTSHNGVEYTQPVKGE 477 Query: 466 -----SQEFLDLV-SGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMN 519 + F + + M+ + M L Q FI + G GGSGKS Sbjct: 478 TLKNNAPNFWRWLHHSAGGDFDKMERIKAALYMVLANRYDWQLFIEVTGAGGSGKSVFTG 537 Query: 520 LIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIK 579 + + G + + D+ R +G ++ + + IK Sbjct: 538 IARMLTGELHATSGTMEDMDTAR---------ERASFVGKSLITLPDQATYTGSGPG-IK 587 Query: 580 QMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA-- 637 +TGGD + + + N+ + RR ++ PF+ + Sbjct: 588 AITGGDVVRIDPKHEKPFHTVI-RAVVIATNNEPMRFTERQGGISRRRVIFPFNHEVPEA 646 Query: 638 NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEER---------Q 688 RD K+ ++G+ +D + P +R Sbjct: 647 ERDPHLLDKI-KAELPVI----VRGLL------IDFEQPGKAKSLLIAQRDSAEALQVKN 695 Query: 689 GTDTYQAWID--------DCCDIGEN--LWEESHSLAKSYSEYREQEL--NYDRKRISTR 736 D + + +G+ E L +Y Y E + Sbjct: 696 DNDPMYGFCSYLLGLPNPEGMYMGDGRMAREPRIYLYHAYLAYLEAYGYQRTPTLPKFSG 755 Query: 737 TVTLNLKQKGFIGGIKREKIEKEWK 761 + LK G K+ K K + Sbjct: 756 DLRDTLKAFGITLDSKKSKKGKRYN 780 >gi|9885251|emb|CAC04163.1| putative primase [Lactococcus phage phi31] Length = 492 Score = 185 bits (470), Expect = 2e-44, Method: Composition-based stats. Identities = 63/398 (15%), Positives = 141/398 (35%), Gaps = 26/398 (6%) Query: 375 DNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDG 434 D F+ N + + +K+ L+ + ++ +S + ++G Sbjct: 79 DKGIYETRADFFHNVIFWIEPSFSEAKSNQVIFHLKNMAKEVEST----ASRDLVPVKNG 134 Query: 435 ILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF-----LDLVSGYF-ESEEVMDYFTR 488 I + +T + + T + T ++E + D + EE++ + Sbjct: 135 IYNKKTKKLEPFSNRYVFTSTIETEYIEEIEAPNINGWNVDDWLLDLMSGDEELVKLLWQ 194 Query: 489 CVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGK 548 + +L G ++ I G G GK TL LI G Q V + + + + Sbjct: 195 VISASLNGNYSYRKSIWFVGEGNDGKGTLQQLISNLVGLQNVASLKINQFSE-------- 246 Query: 549 ANPSLIRLMGSRIVIISETNENDEINA-AKIKQMTGGDCMTARLNYGNTYSESPASFTPF 607 +L + G ++I + I+ + + G+ + Y T Sbjct: 247 -RFTLSMIEGKTVIIGDDVQAGLYIDDSSNFNSVVTGEPVFVEEKGKQPYVSF-YKKTVI 304 Query: 608 IVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYI 667 N VRN + +RR+++IPF K + +D ++A K + + E ++ LK Sbjct: 305 QSTNGLPKVRNKTNGTYRRFLIIPFRKTFSAKDDNWAIKDDYIFREEVLQYVLKKAIELN 364 Query: 668 SKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELN 727 + D P+ +E ++ ++ ++++ ++ L Y E+ Sbjct: 365 FE--RFDEPQATKVMMQEFKEKNNSIIEFVNEWFPQFKSNVLPVRFLWWLYQEWCRDSG- 421 Query: 728 YDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRI 765 ++ R +L + K++ K+ R+ Sbjct: 422 --YTALAKRQFDNDLSKNIPDNWQKKKIRPKDDFYLRM 457 >gi|315651057|ref|ZP_07904091.1| phage/plasmid primase [Eubacterium saburreum DSM 3986] gi|315486647|gb|EFU76995.1| phage/plasmid primase [Eubacterium saburreum DSM 3986] Length = 728 Score = 185 bits (469), Expect = 3e-44, Method: Composition-based stats. Identities = 53/406 (13%), Positives = 137/406 (33%), Gaps = 30/406 (7%) Query: 396 VEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKS 455 + ++ + + A +++ +++ ++G+ +++T ++ T+ Sbjct: 333 LTNDNLLNNVYNLMLADVDHMANEKNFNTNEKYINFKNGLYNIDTKALEPHNADILYTRQ 392 Query: 456 TGTPFVEGEPSQE---FLDLVSGYFE------SEEVMDYFTRCVGMALL---GGNKAQRF 503 T ++E E F + + + G+A+ G + Sbjct: 393 VNTEYIESYTITEYHTFTKFIRDLCKSADGGIDWQAYKSLQEVAGLAISNIYGHKTKKAV 452 Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVI 563 VG +GKS + L+ + G + + + ++ +++ + R+++ Sbjct: 453 FLYSPVGNTGKSQFLGLLGHLIGQENITSIPLQNMNEDKG------RFAFANAGLVRLIM 506 Query: 564 ISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV-RNPDDA 622 + ++ D +++ K +TGGD + G I N ++ + + Sbjct: 507 NGDQSKADVKDSSIFKSVTGGDAIKVEAK-GKDIRTLVFKGLVVIACNDLPYIADDKGEH 565 Query: 623 WWRRYIVIPFDKPIANRDASFAQ-KLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLK 681 +RR ++P I ++ K W ++G+ + + + Sbjct: 566 IYRRMYIVPCTHTIEEKERDPNILDKMIKELPAIANWGIEGLHRLRANNYNFTEIAAGAE 625 Query: 682 AKEEERQGTDTYQAWIDDC---CDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738 R+ +DT +++ D L +Y++Y + R+ + R Sbjct: 626 VIANYRKNSDTVYSFLMDEGYIITKNPADKVSKQELLTAYNKYCQDNG---RQAVGVRQF 682 Query: 739 TLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDNSNI 784 + + G K + +GLKL F V++ I Sbjct: 683 RDRIVKL---TGYTIHKTRLKNILASYCEGLKLSDEFIPVNEGQAI 725 >gi|125974238|ref|YP_001038148.1| P4 family phage/plasmid primase [Clostridium thermocellum ATCC 27405] gi|125714463|gb|ABN52955.1| phage / plasmid primase, P4 family [Clostridium thermocellum ATCC 27405] Length = 624 Score = 185 bits (468), Expect = 4e-44, Method: Composition-based stats. Identities = 50/349 (14%), Positives = 110/349 (31%), Gaps = 23/349 (6%) Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY-FESEEV 482 + +GI ++ + + + IT + + + E+ Sbjct: 292 EDYNRIAFNNGIYNIIDDSFTEHSPDFIITNRIPWDYNPNAYFELADKTLDKISCNDAEI 351 Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542 +G N+ + + G +GKST ++++ G + + ++ Sbjct: 352 RSVLEELIGYTFYRRNEIGKAFILTGEKQNGKSTFLDMVTTLIGISNIAALDLKEL---- 407 Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602 L G I + + + K++ GD + A + + + Sbjct: 408 -----GERFKTAELFGKLANIGDDIGDEFIAEPSMFKKLVTGDRVNAERKGKDPF-DFNN 461 Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQK----LETKYTLEAKKW 658 N V++ A RR ++IPF D F L TK ++E Sbjct: 462 YSKLLFSANNVPRVKDKTGAVQRRLLIIPFKAKFTADDPDFRPDIKYELRTKESMEYLIL 521 Query: 659 FLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSY 718 I + +E + + + ++ EN E + ++ K+Y Sbjct: 522 LGLKGLKRILQNKKFTKSIQVEHELKEYEKTNNPIIEFYEEYETKVEN--EPTKNVYKNY 579 Query: 719 SEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIK 767 E+ LN + + +S + + ++ G K + + K RI Sbjct: 580 LEFC---LNNNLQPLSHIEFSRQITKR---FGYKTIDKKIDGKKYRIFV 622 >gi|94988182|ref|YP_596283.1| DNA primase [Streptococcus phage 9429.1] gi|94990062|ref|YP_598162.1| DNA primase [Streptococcus phage 10270.1] gi|94993974|ref|YP_602072.1| DNA primase [Streptococcus phage 10750.1] gi|94541690|gb|ABF31739.1| DNA primase [Streptococcus phage 9429.1] gi|94543570|gb|ABF33618.1| DNA primase [Streptococcus phage 10270.1] gi|94547482|gb|ABF37528.1| DNA primase [Streptococcus phage 10750.1] Length = 491 Score = 184 bits (467), Expect = 4e-44, Method: Composition-based stats. Identities = 57/384 (14%), Positives = 124/384 (32%), Gaps = 22/384 (5%) Query: 378 KNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILD 437 K+ K + N + S++ R++ ++GI D Sbjct: 84 KDYKFAYKLIHILQPTFNETKCRNVLFMLASMDRKYGAMDFEPEFQDVRRYVLVKNGIYD 143 Query: 438 LETGQKVKPTKELYITKSTGTPFVEGEPSQEFL-----DLVSGYF-ESEEVMDYFTRCVG 491 + + + T + P + ++++ + V Sbjct: 144 KYKRKLLPFDYRFINFSTIETELIPNAPLPTIDGWDVESWLLDLMSGDKDLVKLLWQVVA 203 Query: 492 MALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANP 551 +L G ++ I G G GK T +I G + V + + + Sbjct: 204 ASLNGNYSYRKSIWFVGNGNDGKGTFQQMISNLVGFKNVAPLKLNQFSE---------RF 254 Query: 552 SLIRLMGSRIVIISETNENDEINA-AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVP 610 L + G ++I + ++ + + G+ ++ N Y T Sbjct: 255 GLAIIEGKTVIIGDDVQAGIYVDESSNFNSVVTGEPVSIEKKGENPYMAI-FKKTVIQST 313 Query: 611 NKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKG 670 N +N + +RR I+IPF K ++++ ++A K + E ++ L KA Sbjct: 314 NGMPSFKNKSNGTYRRIIIIPFKKTFSSKEDNWAIKDDYINRKEVLEYVL--WKAINIDF 371 Query: 671 LDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDR 730 P+ + ++ +T A+IDD + + + L Y E+ + + Sbjct: 372 DRFSEPKATQERMHAFKRDNNTILAFIDDWFERFTSTVLPTRFLWWLYKEWCKDNGHT-- 429 Query: 731 KRISTRTVTLNLKQKGFIGGIKRE 754 + T L G +K++ Sbjct: 430 -PLKQSTFENELSTNIPDGWVKKK 452 >gi|212638502|ref|YP_002315022.1| phage associated DNA primase [Anoxybacillus flavithermus WK1] gi|212559982|gb|ACJ33037.1| Phage associated DNA primase [Anoxybacillus flavithermus WK1] Length = 620 Score = 184 bits (467), Expect = 4e-44, Method: Composition-based stats. Identities = 59/474 (12%), Positives = 145/474 (30%), Gaps = 39/474 (8%) Query: 305 SRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKE 364 DA+ + + + + K ++ + K + FL Sbjct: 166 YELDDAFIEEL-AHFIDEFVFGEPLGKELIHVIESVNQTYEK---KKKGQAVQFLNEKDI 221 Query: 365 DVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAG------SIFSIT 418 + + K + ++ D+ N + + L+ +F I Sbjct: 222 VMTSEVLVSRLDIKYYQQKLYFKQDDHYVHNDNKLLREIDKLIKLKPNQHKQLIELFKIK 281 Query: 419 SDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY-F 477 ++ ++ + G + ++ G+ ++ + +G + + + Sbjct: 282 AEYIEEQDFPIKLPGGYI-IDDGEVIEADYGFTPYY-LDVQYQDGAYDEHVDQFLDFFTM 339 Query: 478 ESEEVMDYFTRCVGMALLGGNKAQRFIHIRG-VGGSGKSTLMNLIKYAFGNQYVINAEAS 536 +++ G L+ + +G G +GKST + +I G S Sbjct: 340 NRKDLRMVIEEMFGHILMTHSFPHIVFFFQGHKGNNGKSTFLKMINEFAGELA------S 393 Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNT 596 + N +A + L G + I + + + + K + GD + R Y Sbjct: 394 QLTLNDFNDATS----VAFLEGKLVNIGDDIDASYMEQSKNFKTLASGDPIMVRPIYQQP 449 Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETK-YTLEA 655 + + T N ++ RR +VIP D + RD +KL + Sbjct: 450 F-KLKNRATLIFTCNDMPTFKDKSGGIARRVVVIPCDNHVKRRDLDLDRKLSSPNAKSYI 508 Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD--CCDIGENLWEESHS 713 + L+G++ + G + +E +D+ A+ + + + Sbjct: 509 LRLALEGIQRIKANGGKLTDSLTIQAKTKEYFIASDSVLAFESENQHLILNR----PAKD 564 Query: 714 LAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIK 767 + +Y + + + + L G+ + + + K R + Sbjct: 565 VYNAYVAFCFENG---LREVGKVEFGRRLANVGY----ETKVRKINGKPIRYYQ 611 >gi|284176401|ref|YP_003406676.1| phage/plasmid primase, P4 family [Haloterrigena turkmenica DSM 5511] gi|284018058|gb|ADB64003.1| phage/plasmid primase, P4 family [Haloterrigena turkmenica DSM 5511] Length = 1285 Score = 184 bits (467), Expect = 5e-44, Method: Composition-based stats. Identities = 64/360 (17%), Positives = 121/360 (33%), Gaps = 30/360 (8%) Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEG---EPSQEFLDLVSGYFESEE 481 + + +G+ D + G+ + + T+S + E + + + E Sbjct: 674 DADLVCLGNGVYDFDAGKLREHDPKYLFTQSIPWDYPENPESAECPAIEEFMDDITQREA 733 Query: 482 VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ-YVINAEASDIMQ 540 +G ALL + F+ + G G +GK+T N+++ G Q + AE ++I + Sbjct: 734 DKLTMYEFIGHALLPHYDYKAFMVLFGPGDNGKTTFYNVVEQLLGGQSNISAAEMAEIAE 793 Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600 NR ++G+ I +E N + IK+MTGGD G E Sbjct: 794 NRFRAET--------VIGNYANIAAEMNARKIDDMGMIKKMTGGDTFQVEPK-GKPAYEV 844 Query: 601 PASFTPFIVPNKHLFVRNPDDAWWRRYIVI--------------PFDKPIANRDASFAQK 646 + T N+ + R I PF+K + A+ Sbjct: 845 QNTATMMFGCNEPPVLPERGRKIATRLYPIELPYEFKNDPSPNNPFEKQGRPQSELLAEI 904 Query: 647 LETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGEN 706 ++G I + + +PE + E Q +D + + C + Sbjct: 905 TTESELQGLLVKAIEGAHRLIDRNGEFSLPETAEERMELYEQHSDPIKQFSVKCLENESG 964 Query: 707 LWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRII 766 + Y E+ + D K S L+Q F R + + + + K + Sbjct: 965 KRVAKDDVYNVYVEFCRET---DAKVTSKSVFFKKLRQTTFSYSETRPRADGDGERKLYL 1021 >gi|124486496|ref|YP_001031112.1| hypothetical protein Mlab_1684 [Methanocorpusculum labreanum Z] gi|124364037|gb|ABN07845.1| phage/plasmid primase, P4 family [Methanocorpusculum labreanum Z] Length = 606 Score = 184 bits (466), Expect = 6e-44, Method: Composition-based stats. Identities = 99/508 (19%), Positives = 176/508 (34%), Gaps = 57/508 (11%) Query: 306 RFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKED 365 +D N F G+ +Y + W+ N+ L K+ + L D Sbjct: 115 SLNDEGNAVRFEKEAGGNLVYDIASGQWFAFITNHWEPAREKLGKVLRLVGKSLEQEL-D 173 Query: 366 VFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSS 425 + E+ + N +N + + + S S Sbjct: 174 YWKRRAAAENTPEMRNLVVQLQNHVNLSKNHTKQVALRKMIEGSSMQVNLSEA-----SD 228 Query: 426 SRFLGEQDGILDLETGQKVK-----PTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESE 480 R++ ++G LD TG+ + +E Y + G S F+D + F+ Sbjct: 229 GRYITCKNGALDCRTGEFIPIWACDSIREKYPLIYLDAVYTPGLRSPAFIDHLKKVFDDN 288 Query: 481 --------------EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFG 526 E+ F R +G L GN Q I + G G +GKST +++++ FG Sbjct: 289 VSGLSEEERTLQMMELGRCFLRLLGYLLFPGNPEQVIIFLWGKGSNGKSTTIDVLREIFG 348 Query: 527 NQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE----NDEINAAKIKQMT 582 ++ + + A + R + R+++ISE ++ I+A +K +T Sbjct: 349 SEMSEASVRELYAGSEDRPASG----VARSLSKRVMLISEASDEESRGGRISADTVKALT 404 Query: 583 GGDCMTARLNYGNTYSESPAS---FTPFIVPNKHLFV-RNPDDAWWRRYIVIPFDKPIAN 638 G D +T+R + + Y +S TP V N+ + D A RR IPF A Sbjct: 405 G-DAVTSR--FRDMYEKSRPQRVVCTPVGVTNELPRFDKTLDYALLRRIFTIPFPHLFAG 461 Query: 639 RDASFAQKL-ETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWI 697 + + + + AY +GL + P C + E G A+I Sbjct: 462 DERARDIRECLLAERDAVFSMVADELIAYTKEGL-LPQPAFCASTQNELLAGF-EVSAFI 519 Query: 698 DDCCDIGENLWEESHSLAKSYSEYREQEL---------NYDRKRISTRTVTLNLKQKGFI 748 ++C + E L ++Y + + S L +K Sbjct: 520 EECVEKSETGRVSRLELEEAYISWCARHDIPVGLAKIQMPGYDEYSQVNFRQGLSEKEKR 579 Query: 749 GGIKREKI----EKEWKSKRIIKGLKLK 772 G K ++ E+ S+R K +LK Sbjct: 580 GLFKGMRVYGFEEQRTNSQRYFK-CRLK 606 >gi|218442614|ref|YP_002380934.1| P4 family phage/plasmid primase [Cyanothece sp. PCC 7424] gi|218174972|gb|ACK73704.1| phage/plasmid primase, P4 family [Cyanothece sp. PCC 7424] Length = 1145 Score = 183 bits (464), Expect = 9e-44, Method: Composition-based stats. Identities = 90/629 (14%), Positives = 187/629 (29%), Gaps = 97/629 (15%) Query: 206 TNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKG----KEIARRWSKQ-GSTY 260 + ++ + H V S + IA +S+ S Y Sbjct: 360 DEFVLRKGITALKQLLEQSEHGYRWKAKQIVAEHGNDSDEAIEKIFSIAVAYSRTIPSQY 419 Query: 261 DEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYK 320 E + W T + Y IP + ++ + + Sbjct: 420 KLEEETFFWATIRNSLGELDPEAFRAKLKARYGDTPSIPTKSGQDLKVPDWAQSSIAKWL 479 Query: 321 KGHFL----YTADTKAWYKKDKNNVYIWSL----TLDKITASIMNFLVSMKEDVFDLSEE 372 + + D + W++ N IW+ + +I + + L + E + Sbjct: 480 AERYRPLLAFNTDIEEWFRYSAINEGIWTKDPKYYIWQIIITELETLADIHEQL------ 533 Query: 373 PEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQ 432 ++ K P++ + + + + D L Sbjct: 534 ----HEKKKRPKYGSGFISGIEMLLKA----------------YLPVRGWDEQPGLLPFI 573 Query: 433 DGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVG 491 +G+ +L TG+ V +T + G + LD + E ++++ + Sbjct: 574 NGVKNLTTGEFVPHAPGFRLTWCLPYEYSPGATCEPILDWLHSMTNGDEAIIEFIRAHLN 633 Query: 492 MALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANP 551 + G + Q ++ + G GG+GK TL L G++ ++ ++ +NR Sbjct: 634 AIITGRSDIQSYLELIGPGGTGKGTLTRLASALTGDRNTVSTTLRNLEENR--------F 685 Query: 552 SLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPN 611 RL +R+VII++ + + + +K +TGGD + + I N Sbjct: 686 DTSRLYQARLVIITDAEKWGG-DVSVLKAITGGDKLRFEQKFKQPLDGFYYKGRVMICAN 744 Query: 612 KHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKL--------ETKYTLEAKKWFLKGV 663 + + + RR + I + +L Y W L Sbjct: 745 EPIQSADYTSGLERRRQTVYMTNKIPLKSQRKLIELSNSGVEGEFVPYLPGLMNWVLD-- 802 Query: 664 KAYISKGLDVDIPEVCLKAK-------EEERQ----GTDTYQAWIDDCCDIGENLWE--- 709 + E ++ + + T+ W+D + + Sbjct: 803 -------MSPTDVERIIRETPTAHHQFQYYKAQILTETNPIADWLDTSVVVRPDYRTAIG 855 Query: 710 --------ESHSLAK-----SYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKI 756 ES + Y+ Y E K +S R L + + + Sbjct: 856 VASRDKSSESPNWYLNTDRWLYANYAEYCHGSGAKPVSVRRFVNLLHDL-AVNQLNLKVT 914 Query: 757 EKEWKSKRIIKGLKLKPAFESVDDNSNII 785 + + + GLKL+ DD+ II Sbjct: 915 KGRDRMGSYVLGLKLRS---PDDDDPLII 940 >gi|229099129|ref|ZP_04230063.1| hypothetical protein bcere0020_43520 [Bacillus cereus Rock3-29] gi|228684357|gb|EEL38301.1| hypothetical protein bcere0020_43520 [Bacillus cereus Rock3-29] Length = 714 Score = 182 bits (462), Expect = 2e-43, Method: Composition-based stats. Identities = 107/771 (13%), Positives = 237/771 (30%), Gaps = 88/771 (11%) Query: 30 PQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDS--KDEKTANTFKDTFEI 87 W E+ + G GF+ E DID ++ + + KD Sbjct: 4 SNNRNTWSTFEEVLEEYQQGDYSGIGFMF-SKEDAFIGIDIDHCVQEGEFTDLAKDIMT- 61 Query: 88 LHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKE 147 + + I I + ++ L+I G+YF Sbjct: 62 IVPSYTEYSPSGQGIHIIAKGKLPLRGPGTGKKNPALGLEIYRHGRYFTFT--------- 112 Query: 148 YTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVK--DKKSIIPSKTWTNNNNRQY 205 + VE++ + + + + P +KS I + R + Sbjct: 113 ---ANSINNLPVEESTENLKVLFQKYIEKKEVPAAPKTLYVSRKSNISILSDAELWERMF 169 Query: 206 TNREITAFLSCFGEEFYNGSHDEWIPVVMAVHH-----ETRGSSKGKEIARRWSKQGSTY 260 ++ A F NG H MA+ + + ++K + R + + Sbjct: 170 DSKSGAAIKDLFQGILINGDHSS---TDMALANHLAFWTDKDAAKMDSMFRESALIRDKW 226 Query: 261 DEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYK 320 D K + D G +++ S SD ++ Sbjct: 227 D------KPHSSDGRTYGQMTIEKA--------------IESTHSSVSD------YNRKN 260 Query: 321 KGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNS 380 H+L K K + + IM + + + E D + Sbjct: 261 DAHYLVNEQGKTTGIKKGSWWSENNG-RTSFLHHIMVEYILQENKIVRFPNEDGDIYVYN 319 Query: 381 KSPRFW--FNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDS-SSRFLGEQDGILD 437 K+ + T + +++ +++ Q E S +++ S ++ ++G+L Sbjct: 320 KATGIYELDKTCRKLRSLVRDAEILKRNQVREVQEYIMDMSPVVNEESKNYIAVENGLLH 379 Query: 438 LETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEV--MDYFTRCVGMALL 495 L++ + + T E+++TK T + + + + G L Sbjct: 380 LDSMEFKEFTSEVFVTKKIPTKYNSNVFDSFVERTLMKV-SDGHLPTIKNIHEMFGAVLY 438 Query: 496 GGNKAQRFIHIRG-VGGSGKSTLMNLIKYAF-GNQYVINAEASDIMQNRPPEAGKANPSL 553 + ++ G +GKST++ +I+ F + + + +N + Sbjct: 439 PTLLVPKMFYLYGRSAHNGKSTVLYMIQKTFNSGENISAISPQKLAENAFAGSS------ 492 Query: 554 IRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKH 613 + G I+ + + ++ +K + G + G + N + Sbjct: 493 --IYGKLANIVDDQPDEVIRDSGTLKTIITGGYVDIEYK-GKGSQTVQMNTVCITASNHY 549 Query: 614 LFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETK------YTLEAKKWFLKGVKAYI 667 R + +R ++PFD N ++ K K + +K Sbjct: 550 PNFREHGNQINKRLHILPFDHNFMNDPDRISEMESMKQLETVSAREYVLKLAVDAIKEMK 609 Query: 668 SKGLD-VDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESH--SLAKSYSEYREQ 724 + +D + E +AK++ + D + + + +EE +Y E+ + Sbjct: 610 QRTVDILTYNEKAEEAKQKFMEYNDPLADFF---FEYDKQFFEEVRGTDALNAYDEWCKD 666 Query: 725 ELNYDRKRISTRTVTLNL-KQKGFIGGIKREKIEKEWKSKRIIKGLKLKPA 774 + + + + ++ + K KI WK+ +KG K K A Sbjct: 667 N--HVQYPLGQKQFKDSVCTKYEMEWKDKMIKINGSWKT---VKGFKTKSA 712 >gi|331659981|ref|ZP_08360919.1| primase [Escherichia coli TA206] gi|315296988|gb|EFU56268.1| nucleoside triphosphatase, D5 family [Escherichia coli MS 16-3] gi|331053196|gb|EGI25229.1| primase [Escherichia coli TA206] Length = 804 Score = 182 bits (462), Expect = 2e-43, Method: Composition-based stats. Identities = 83/643 (12%), Positives = 173/643 (26%), Gaps = 91/643 (14%) Query: 152 TPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREIT 211 V P + + I + + ++ Sbjct: 196 YAGAVIDVGALPE--PAQLPAKAAKSKAKKQRQRDAAAVIDADFDDLSAGPDNFLIADLR 253 Query: 212 AFLSCFGEEFYNGSHDEWIPVVMAVHHE--TRGSSKGKEIARRWSKQGSTYDEENFNYKW 269 + L + WI + T +++ WS + + + + Sbjct: 254 SALWFPSMLQKAWDNGAWIEQGYRLASLKGTDFEDDARQLWVEWSLTAA---DGWPDEEL 310 Query: 270 DTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTAD 329 D + A ++++ ++F R AY + M + +G L Sbjct: 311 DEVAAQRWDGLAPDKTSYKAIFTDAQAQGWNNPSTWRAKAAYIEKM-APSTRGELLAQYY 369 Query: 330 TKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNT 389 K D N VY ++ + A +++ R + Sbjct: 370 GNVCLKADGNMVYHYTGQGWEHIA-------------------------DAELRRQLSHI 404 Query: 390 DYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKE 449 + KS +++ ++ +G +G+ DLE + + Sbjct: 405 FKDNGVPFTPYEVKSAIEAMGMLLPLMG-----ETPRNLIGFANGVYDLEAQRFRPHCPD 459 Query: 450 LYITKSTGTPFVEGEP-------SQEFLDLV-SGYFESEEVMDYFTRCVGMALLGGNKAQ 501 ++T G + + + F + + M+ + M L Q Sbjct: 460 DWLTSHNGVEYTQPVKGETLKNNAPNFWRWLHHSAGGDFDKMERIKAALYMVLANRYDWQ 519 Query: 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRI 561 FI + G GGSGKS + + G + + D+ R +G + Sbjct: 520 LFIEVTGAGGSGKSVFTGIARMLTGELHATSGTMEDMDTAR---------ERASFVGKSL 570 Query: 562 VIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDD 621 + + + IK +TGGD + + + N+ + Sbjct: 571 ITLPDQATYTGSGPG-IKAITGGDVVRIDPKHEKPFHTVI-RAVVIATNNEPMRFTERQG 628 Query: 622 AWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVC 679 RR ++ PF+ + RD K+ ++G+ +D + P Sbjct: 629 GISRRRVIFPFNHEVPEAERDPHLLDKI-KAELPVI----VRGLL------IDFEQPGKA 677 Query: 680 LKAKEEER---------QGTDTYQAWID--------DCCDIGEN--LWEESHSLAKSYSE 720 +R D + + +G+ E L +Y Sbjct: 678 KSLLIAQRDSAEALQVKNDNDPMYGFCSYLLGLPNPEGMYMGDGRMAREPRIYLYHAYLA 737 Query: 721 YREQEL--NYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWK 761 Y E + + LK G K+ K K + Sbjct: 738 YLEAYGYQRTPTLPKFSGDLRDTLKAFGITLDSKKSKKGKRYN 780 >gi|268592737|ref|ZP_06126958.1| putative P4-specific DNA primase [Providencia rettgeri DSM 1131] gi|291311513|gb|EFE51966.1| putative P4-specific DNA primase [Providencia rettgeri DSM 1131] Length = 801 Score = 182 bits (460), Expect = 3e-43, Method: Composition-based stats. Identities = 92/670 (13%), Positives = 189/670 (28%), Gaps = 104/670 (15%) Query: 151 TTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREI 210 V+ P E + + + + Sbjct: 195 YYEGEVINVDALP-----LPEIALVSKKGKATSDTTTQSEDFADFDDLEALDECLISDIR 249 Query: 211 TAFLSCFGEEFYNGSHDEWIPVVMAVHHE--TRGSSKGKEIARRWSKQGSTYDEENFNYK 268 +A + + H +WI + T + + + WS + Y + + Sbjct: 250 SALWHPEMLKQAHNDH-QWISNGYRLASLKNTELEDEARTLWVEWSLTAADYYPDEQLDE 308 Query: 269 WDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTA 328 ++ S++ +F+ KL K A R M + + Sbjct: 309 VAGNRWD--NALEPNGSSYRGIFFEAQKLGWKNPAALRMKAENIGKMAASERGELLAEYY 366 Query: 329 DTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFN 388 +D VY ++ + + I+ + + + + Sbjct: 367 GQIRLKDEDSERVYYYNGKIWEYLPDIV---------------------LRRQLAKMFID 405 Query: 389 TDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTK 448 D N ++ ++ ++ ++S +G +G+ DL + Sbjct: 406 NDATYTNNAISAAVEAMKLAIPVMG---------ETSRFLIGFANGVYDLTEKSFRPHSA 456 Query: 449 ELYITKSTGTPFVEGEPS-------QEFLDLVSGYFESE-EVMDYFTRCVGMALLGGNKA 500 ++T F P+ F +S + E M+ + M L Sbjct: 457 IDWLTNHNNIEFTSPLPNENYQDHAPNFYKWLSQSSGGKNEYMERIKAALFMVLANRYDW 516 Query: 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSR 560 Q F+ I G GGSGKS + G+ + D+ R ++ +G Sbjct: 517 QLFLEITGPGGSGKSVFTGIAALLAGHHNTASGSVRDLDIPRERDS---------FVGKS 567 Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHL-FVRNP 619 ++I+ + A +K +TGGD + + + + N Sbjct: 568 LIILPDQERYSGSGAG-LKAITGGDPVKVDPKHVRPFETVIEG--VVMATNNEPMRFNEH 624 Query: 620 DDAWWRRYIVIPFDKPIANRDAS--FAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPE 677 RR ++ PF + +D +K+ ++G+ A + + Sbjct: 625 QGGIARRQVIFPFTSQVKEKDIDNQLLEKI-KAELPVI----VRGLLAEFD---KPEDAK 676 Query: 678 VCLKAKE------EERQGTDTYQAWIDDCCDIGENL--------------WEESHSLAKS 717 L A+ + +Q T+ + C + L + L + Sbjct: 677 CLLLAQRNSAEALKVKQETNPLYGF----CSYLKALMLVNGMYMGTATPPFYPRTHLYHA 732 Query: 718 YSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFES 777 Y Y + + + +S L L GI+ K KR+ KG + Sbjct: 733 YLAYMDAHGH--KYVLSLTDFGLKLPNILKESGIELTK-------KRLKKGYRYNVGLTE 783 Query: 778 VDDNSNIIDF 787 D I DF Sbjct: 784 DADEWIISDF 793 >gi|312901365|ref|ZP_07760645.1| phage/plasmid primase, P4 family protein [Enterococcus faecalis TX0470] gi|311291528|gb|EFQ70084.1| phage/plasmid primase, P4 family protein [Enterococcus faecalis TX0470] Length = 619 Score = 182 bits (460), Expect = 3e-43, Method: Composition-based stats. Identities = 60/397 (15%), Positives = 136/397 (34%), Gaps = 25/397 (6%) Query: 381 KSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLET 440 K +W N + + A+ + + I +L++++ + ++ + L+ Sbjct: 245 KEDNYWINDQNKLLRKIDKRIKLLPAKWKQILDLLKIKGELIEAADFPIQFRNDFM-LDG 303 Query: 441 GQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESE-EVMDYFTRCVGMALLGGNK 499 + + + + + + + ++ + ++ +G L+ Sbjct: 304 AEIIPMSTREFTPFFLDVDYDPDAYDKTVDEFLNFLVSDKKDLRIIVEELLGHILMTAGF 363 Query: 500 AQRFIHIRGV-GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMG 558 + + G G +GKST + ++ G+ + N E S++ L G Sbjct: 364 PHKVFFLVGSSGANGKSTFLEMLNSFIGD----------LGLNLALEQFNDQTSVMELEG 413 Query: 559 SRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRN 618 + I + + + K + G+ + R Y Y + T N+ ++ Sbjct: 414 KLVNIGDDIDAGYMEKSMNFKTLASGNTIMVRPIYSKPY-KLKNKATLIFTANEMPTFKD 472 Query: 619 PDDAWWRRYIVIPFDKPIANRDASFAQKL-ETKYTLEAKKWFLKGVKAYISKGLDVDIPE 677 RR ++IP + + D +KL LK ++ I+ G + E Sbjct: 473 KSGGIARRVVIIPCENKVKKADPKIDEKLSSDNAKSYLLNLALKAMERIINNGGQLSSSE 532 Query: 678 VCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRT 737 K EE +D+ +I C I EN+ + + Y + E+ K + Sbjct: 533 TVAKVTEEYFVESDSILTFIHQ-CGIDENM--TTKGVYDEYLKTCEESG---SKPYTQTK 586 Query: 738 VTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPA 774 T LK G+ ++E+ K K +++ Sbjct: 587 FTQRLKSLGY----EKERRMIMGKRYFYYKKIEVNEE 619 >gi|167771872|ref|ZP_02443925.1| hypothetical protein ANACOL_03245 [Anaerotruncus colihominis DSM 17241] gi|167665670|gb|EDS09800.1| hypothetical protein ANACOL_03245 [Anaerotruncus colihominis DSM 17241] Length = 433 Score = 181 bits (459), Expect = 3e-43, Method: Composition-based stats. Identities = 56/373 (15%), Positives = 127/373 (34%), Gaps = 22/373 (5%) Query: 405 TAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGE 464 +L A S L + + +G ++ + Y + Sbjct: 71 VVTNLLASIKLQAYSPPLPIETDRIHVANGTYFMDDSFTTD---KSYCNNRLTVAYNSDA 127 Query: 465 PSQE-FLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKY 523 P+ + +L +S ++E+V +G LL K Q+ + + G GG GKS + +++ Sbjct: 128 PAPKKWLQFLSELLQAEDV-PTLQEFLGYCLLPTTKGQKMLMLIGKGGEGKSRIGLVMRS 186 Query: 524 AFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTG 583 G+ + + I + S L +++ + + + IK + Sbjct: 187 LLGD----SMNTTSIQK-----VESNRFSRADLENKLLMVDDDMDMSALPKTNYIKSIVT 237 Query: 584 GDC-MTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF-DKPIANRDA 641 +C M +Y + + D ++RR IV+ D+P D Sbjct: 238 SECKMDMERKGVQSYQSQLYVRFLCFGNGALTALHDKSDGFFRRQIVLTTKDRPAGRADD 297 Query: 642 SFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWI--DD 699 F + W L+G+ I I + E ++ ++ ++ + Sbjct: 298 PFLVDKLLREKEGIFLWCLEGLHRLIRNNYQFSISGKARENMEAVKRSSNNVIEFLQSEG 357 Query: 700 CCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE-KIEK 758 + S ++ ++Y+ + + +K +S V+ L Q + ++ + Sbjct: 358 YIRFRADSEASSKAIYEAYTRWCDDN---AQKPMSANRVSSELAQNERLYNVEATNNVRI 414 Query: 759 EWKSKRIIKGLKL 771 K R G+++ Sbjct: 415 GGKRVRGFVGIEV 427 >gi|94990320|ref|YP_598420.1| DNA primase [Streptococcus phage 10270.2] gi|94543828|gb|ABF33876.1| DNA primase [Streptococcus phage 10270.2] Length = 493 Score = 181 bits (459), Expect = 4e-43, Method: Composition-based stats. Identities = 65/466 (13%), Positives = 135/466 (28%), Gaps = 48/466 (10%) Query: 322 GHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNN---- 377 Y + WS K+ A +L +DV +LSE Sbjct: 2 DFEFYREKLNEEPGIEPGKPKTWSAIKSKLVAYRREWLEEAGKDVKNLSELAVAIGINKF 61 Query: 378 ----------------------KNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIF 415 K+ K + N + S++ Sbjct: 62 LHVITLENGKVAIYDPDQGYYIKDYKFAYKLIHILQPTFNETKCRNVLFMLASMDRKYGA 121 Query: 416 SITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFL----- 470 R++ ++GI D + + + + T + P Sbjct: 122 MDFEPEYHDVRRYILVKNGIYDKKNKALLPFDHQFINFSTIETELIPNAPLPTIDGWDVE 181 Query: 471 DLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529 + ++++ + V +L G ++ I G G GK T +I G + Sbjct: 182 SWLLDLMSGDKDLVQLLWQVVAASLNGNYSYRKSIWFVGDGNDGKGTFQQMISNLVGFKN 241 Query: 530 VINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA-AKIKQMTGGDCMT 588 V + + + L + G ++I + ++ + + G+ ++ Sbjct: 242 VAPLKLNQFSE---------RFGLAIIEGKTVIIGDDVQAGIYVDESSNFNSVVTGEPVS 292 Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLE 648 N Y T N +N + +RR I+IPF K ++ + ++A K + Sbjct: 293 IEKKGENPYMAI-FKKTVIQSTNGMPVFKNKSNGTYRRIIIIPFKKTFSSAEDNWAIKDD 351 Query: 649 TKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLW 708 E ++ L K+ P+V E ++ +T ++++ + E+ Sbjct: 352 YINRKEVLEYVL--WKSINLDFDKFYEPKVTQDRMREFKEENNTILKFLNEYLEDVESTR 409 Query: 709 EESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754 L Y + + K L G K + Sbjct: 410 LPVRFLWDVYQSWCTENGVTKPK---KSNFEKELAINLPDGWEKTK 452 >gi|283795092|ref|ZP_06344245.1| phage/plasmid primase, P4 family protein [Clostridium sp. M62/1] gi|291076734|gb|EFE14098.1| phage/plasmid primase, P4 family protein [Clostridium sp. M62/1] Length = 431 Score = 181 bits (459), Expect = 4e-43, Method: Composition-based stats. Identities = 56/373 (15%), Positives = 127/373 (34%), Gaps = 22/373 (5%) Query: 405 TAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGE 464 +L A S L + + +G ++ K + T + Sbjct: 69 VVTNLLASIKLQAYSPPLPIETDRIHVANGTYFMDGSFT--ADKSYCNNRLT-VAYNPNA 125 Query: 465 PSQE-FLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKY 523 P+ + +L +S + E + +G LL K Q+ + + G GG GKS + +++ Sbjct: 126 PAPKKWLQFLSELLQ-PEDIPTLQEFLGYCLLPTTKGQKMLMLIGKGGEGKSRIGLVMRS 184 Query: 524 AFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTG 583 G+ + + I + S L +++ + + + IK + Sbjct: 185 LLGD----SMNTTSIQK-----VESNRFSRADLENKLLMVDDDMDMSALPKTNYIKSIVT 235 Query: 584 GDC-MTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF-DKPIANRDA 641 +C M +Y + + D ++RR IV+ D+P D Sbjct: 236 SECKMDMERKGVQSYQSQLYVRFLCFGNGALTALHDKSDGFFRRQIVLTTKDRPAGRADD 295 Query: 642 SFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWI--DD 699 F + W L+G++ I I + E ++ ++ ++ + Sbjct: 296 PFLVDKLLREKEGIFLWCLEGLRRLIGNNYQFSISGKARENMETVKRSSNNVIEFLQSEG 355 Query: 700 CCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE-KIEK 758 + S ++ ++Y+ + + +K +S V+ L Q + ++ + Sbjct: 356 YIRFRADSEASSKAIYEAYTRWCDDN---AQKPMSANRVSSELAQNERLYNVEATNNVHV 412 Query: 759 EWKSKRIIKGLKL 771 K R G+++ Sbjct: 413 GGKRVRGFMGIEV 425 >gi|273809764|ref|YP_003344884.1| primase [Streptococcus phage ALQ13.2] gi|224812516|gb|ACN64909.1| primase [Streptococcus phage ALQ13.2] Length = 506 Score = 181 bits (459), Expect = 4e-43, Method: Composition-based stats. Identities = 56/359 (15%), Positives = 122/359 (33%), Gaps = 22/359 (6%) Query: 404 STAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEG 463 + ++ E +++ RF+ ++GI D + + + + T VE Sbjct: 124 NMSREYEYNNMYMDFEPEYRDVRRFILVKNGIYDKRKKKLLSFDHKFINFSTIETELVEN 183 Query: 464 EPSQEF-----LDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTL 517 P + E+++ + + +L G + ++ I + G G GK T Sbjct: 184 APKPIINGWDVDSWLLDLMSGDSELVELLWQVIAASLNGNHSYRKSIWLVGNGNDGKGTF 243 Query: 518 MNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA-A 576 LI G + V + + + L + G ++I + ++ + Sbjct: 244 QQLISNLVGLKNVAPLKLNQFSE---------RFGLAIIEGKTVIIGDDVQAGIYVDESS 294 Query: 577 KIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI 636 + G+ ++ N Y T N +N + +RR ++IPF K Sbjct: 295 NFNSVVTGEPVSIEKKGENPYLA-QFKKTVIQSTNAMPVFKNKSNGTYRRIVIIPFKKTF 353 Query: 637 ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAW 696 D ++A K + E ++ L KA + P+ + +E ++ +T + Sbjct: 354 GINDDNWAIKDDYINRKEVLEYVL--WKAINLDFDKFNEPKAAQERMQEFKEENNTVYKF 411 Query: 697 IDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755 +++ + L Y + + + K L Q +G IK + Sbjct: 412 LNEYLSDVVSTRIPVRFLWDVYRSWCHEGNHTIPK---KSNFEKELAQNLPVGWIKDRQ 467 >gi|293400200|ref|ZP_06644346.1| putative primase [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306600|gb|EFE47843.1| putative primase [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 433 Score = 180 bits (457), Expect = 7e-43, Method: Composition-based stats. Identities = 56/370 (15%), Positives = 125/370 (33%), Gaps = 22/370 (5%) Query: 408 SLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ 467 +L A S L + + +G ++ + Y + P+ Sbjct: 74 NLLASIKLQAYSPPLPIETDRIHVANGTYFMDGSFSTDRS---YCNNRLTVTYNPDAPTP 130 Query: 468 E-FLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFG 526 + +L +S + E + +G LL K Q+ + + G GG GKS + +I+ G Sbjct: 131 KKWLQFLSELLQ-PEDIPTLQEFLGYCLLPTTKGQKMLMLIGKGGEGKSRIGLVIRSLLG 189 Query: 527 NQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDC 586 + + + I + S L +++ + + + IK + +C Sbjct: 190 D----SMNTTSIQK-----VESNRFSRADLENKLLMVDDDMDMSALPKTNYIKSIVTSEC 240 Query: 587 -MTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF-DKPIANRDASFA 644 M +Y + + D ++RR IV+ D+P D F Sbjct: 241 KMDMERKGVQSYQSQLYVRFLCFGNGALTALHDKSDGFFRRQIVLTTKDRPAGRADDPFL 300 Query: 645 QKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWI--DDCCD 702 + W L+G+ I I + E ++ ++ ++ + Sbjct: 301 VDKLLREKEGIFLWCLEGLHRLIGNNYQFSISGKAKENMETVKRSSNNVIEFLQSEGYIR 360 Query: 703 IGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE-KIEKEWK 761 + S ++ ++Y+ + + +K +S V+ L Q + ++ + K Sbjct: 361 FRADSEASSKAIYEAYTRWCDDN---AQKPMSANRVSSELAQNERLYNVEATNNVHVGGK 417 Query: 762 SKRIIKGLKL 771 R G+++ Sbjct: 418 RVRGFMGIEV 427 >gi|9632452|ref|NP_049424.1| putative primase [Streptococcus phage DT1] gi|4530172|gb|AAD21912.1| putative primase [Streptococcus phage DT1] gi|37781293|gb|AAP36687.1| putative primase [Streptococcus phage kappa3] Length = 504 Score = 180 bits (457), Expect = 7e-43, Method: Composition-based stats. Identities = 56/359 (15%), Positives = 122/359 (33%), Gaps = 22/359 (6%) Query: 404 STAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEG 463 + ++ E +++ RF+ ++GI D + + + + T VE Sbjct: 122 NMSREYEYNNMYMDFEPEYRDVRRFILVKNGIYDKRKKKLLSFDHKFINFSTIETELVEN 181 Query: 464 EPSQEF-----LDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTL 517 P + E+++ + + +L G + ++ I + G G GK T Sbjct: 182 APKPIINGWDVDSWLLDLMSGDSELVELLWQVIAASLNGNHSYRKSIWLVGNGNDGKGTF 241 Query: 518 MNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA-A 576 LI G + V + + + L + G ++I + ++ + Sbjct: 242 QQLISNLVGLKNVAPLKINQFSE---------RFGLAIIEGKTVIIGDDVQAGIYVDESS 292 Query: 577 KIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI 636 + G+ ++ N Y T N +N + +RR ++IPF K Sbjct: 293 NFNSVVTGEPVSIEKKGENPYLA-QFKKTVIQSTNAMPVFKNKSNGTYRRIVIIPFKKTF 351 Query: 637 ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAW 696 D ++A K + E ++ L KA + P+ + +E ++ +T + Sbjct: 352 GINDDNWAIKDDYINRKEVLEYVL--WKAINLDFDKFNEPKATQERMQEFKEENNTVYKF 409 Query: 697 IDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755 +++ + L Y + + + K L Q +G IK + Sbjct: 410 LNEYLSDVVSTRIPVRFLWDVYRSWCHEGNHTIPK---KSNFEKELAQNLPVGWIKDRQ 465 >gi|255505814|ref|ZP_05348281.3| phage/plasmid primase, P4 family domain protein [Bryantella formatexigens DSM 14469] gi|255265791|gb|EET58996.1| phage/plasmid primase, P4 family domain protein [Bryantella formatexigens DSM 14469] Length = 586 Score = 180 bits (457), Expect = 7e-43, Method: Composition-based stats. Identities = 60/398 (15%), Positives = 139/398 (34%), Gaps = 34/398 (8%) Query: 398 ENSKAKSTAQSLEAGSIFSITSDLLDSSS-RFLGEQDGILDLETGQKVKPTKELYITKST 456 ++S +S L + L++ ++ ++G D+ + V+ + + Sbjct: 202 KSSTIQSIYNLLVSQPQIQKKFSDLNNQPTHWINFKNGYFDVIEWKMVEHDTKYLMINQI 261 Query: 457 GTPFVEGEPSQEFLD------LVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVG 510 F + + + E F + +G + + Q+F+ I+G G Sbjct: 262 PYSFYPEQHEEIQKQENITKHYLESSLPDEADQQTFWQYLGYCMTTDTRFQKFLMIKGKG 321 Query: 511 GSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN 570 G+GKS + LI++ G + + D+ + L G ++ ++ Sbjct: 322 GTGKSVAIALIQHIVGIENCSSISLQDLNKRFYATG---------LFGKQLNACADIPCT 372 Query: 571 DEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHL-FVRNPDDAWWRRYIV 629 + IK+ G D + + + + N+ + + +A++RR +V Sbjct: 373 AMQSVDIIKKAVGEDTLLYEKKGQDPT-QFHSYAKLLFSANEMPLNLDDKTNAYYRRLLV 431 Query: 630 IPFDKPI--ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEER 687 + ++ + + +D +K+ K A + +K + + EE Sbjct: 432 LDMNRLVSTSEKDTMLKEKIY-KEADYAIHMGIAALKQLYADN-HFCESLHSRECIEELY 489 Query: 688 QGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGF 747 + D+ +A++D+ + + L + Y+++ E+ DR+ + KG+ Sbjct: 490 RSADSVKAFLDEKICRQKGAKLKRSELYQLYTKFCEEN---DRQAHGKSVFFRMMSDKGY 546 Query: 748 IGGIKREKIEKEWKSKRIIKGLKLKPA-FESVDDNSNI 784 K + L LK F VD I Sbjct: 547 TL--------KRDCNGFYYDNLSLKDEDFVKVDSTEGI 576 >gi|160944862|ref|ZP_02092089.1| hypothetical protein FAEPRAM212_02378 [Faecalibacterium prausnitzii M21/2] gi|158444046|gb|EDP21050.1| hypothetical protein FAEPRAM212_02378 [Faecalibacterium prausnitzii M21/2] Length = 527 Score = 180 bits (455), Expect = 1e-42, Method: Composition-based stats. Identities = 74/432 (17%), Positives = 153/432 (35%), Gaps = 25/432 (5%) Query: 349 DKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQS 408 ++ +FL + E + + V+ + Sbjct: 114 EEKMLEKTDFLYRKSVLYHYNDQYYEAIDAEGVVALYRQYISPGLDGVKNLRNHLDIYKC 173 Query: 409 LEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE 468 ++A L D + ++GIL L + + + + E Sbjct: 174 MKANPRLKYEDSLKDKP--YCPLKNGILYLNKMKLKHHSSKRITFTVLDACYDEDAECPV 231 Query: 469 FLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 F + + E++ + F +G L+ + + F + SGKS L N I+ + Sbjct: 232 FDEFLDTITEGREDLKERFMMALGYLLIEPSSGKYFFVMGYAPNSGKSILGNTIQKLYPE 291 Query: 528 QYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN--DEINAAKIKQMTGGD 585 V N ++ E+ L+ SRI I + + + +K+K++TGGD Sbjct: 292 NSVSNLSLGELGGKFETES---------LLYSRINISLDLPQEVLNASAVSKLKRITGGD 342 Query: 586 CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASF 643 + + + + + N L + + D A+ R I +PF K I RD Sbjct: 343 SIEIQRKNQRS-LKLDHNMKFLFATNFLLRIDSNDPAFLDRIIFLPFMKSIPKDERDPDL 401 Query: 644 AQKLETKYTLEAKKWFLKGVKAYISKGLDV-DIPEVCLKAKEEERQGTDTYQAWIDDCCD 702 A+KL K L+ + + +G IP+V + + D + ++++ C+ Sbjct: 402 AKKLW-KERDAIVTKALQYARKLMKQGWQFPPIPDVDCMRGIQRKNSMDYLKEFLENHCE 460 Query: 703 IGE-NLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWK 761 +G+ N + + L ++Y ++ S ++Q G G R+++ Sbjct: 461 MGDYNYFTATSDLRRTYEACCDENGTC---PCSATAFNKYMEQAG--GVRDRKRLTASEN 515 Query: 762 SKRIIKGLKLKP 773 G++L+P Sbjct: 516 PVWGFYGIRLRP 527 >gi|9632926|ref|NP_049955.1| putative primase [Streptococcus phage Sfi19] gi|5524021|gb|AAD44074.1|AF115102_33 orf508 gp [Streptococcus phage Sfi19] gi|4049997|gb|AAC97924.1| putative primase [Streptococcus phage Sfi19] Length = 506 Score = 180 bits (455), Expect = 1e-42, Method: Composition-based stats. Identities = 56/359 (15%), Positives = 121/359 (33%), Gaps = 22/359 (6%) Query: 404 STAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEG 463 + ++ E +++ RF+ ++GI D + + + + T VE Sbjct: 124 NMSREYEYNNMYMDFEPEYRDVRRFILVKNGIYDKRKKKLLSFDYKFINFSTIETELVEN 183 Query: 464 EPSQEF-----LDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTL 517 P + E+++ + + +L G + ++ I + G G GK T Sbjct: 184 APKPTINGWDVDSWLLDLMSGDSELVELLWQVIAASLNGNHSYRKSIWLVGNGNDGKGTF 243 Query: 518 MNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA-A 576 LI G + V + + + L + G ++I + ++ + Sbjct: 244 QQLISNLVGLKNVAPLKLNQFSE---------RFGLAIIEGKTVIIGDDVQAGIYVDESS 294 Query: 577 KIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI 636 + G+ ++ N Y T N +N + +RR ++IPF K Sbjct: 295 NFNSVVTGEPVSIEKKGENPYLA-QFKKTVIQSTNAMPVFKNKSNGTYRRIVIIPFKKTF 353 Query: 637 ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAW 696 D ++A K + E ++ L KA P+ + +E ++ +T + Sbjct: 354 GINDDNWAIKDDYINRKEVLEYVL--WKAINLDFDKFSEPKATQERMQEFKEENNTVYKF 411 Query: 697 IDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755 +++ + L Y + + + K L Q +G IK + Sbjct: 412 LNEYLSDVVSTRIPVRFLWDVYRSWCHEGNHTIPK---KSNFEKELAQNLPVGWIKDRQ 467 >gi|219853114|ref|YP_002467546.1| P4 family phage/plasmid primase [Methanosphaerula palustris E1-9c] gi|219547373|gb|ACL17823.1| phage/plasmid primase, P4 family [Methanosphaerula palustris E1-9c] Length = 507 Score = 180 bits (455), Expect = 1e-42, Method: Composition-based stats. Identities = 61/428 (14%), Positives = 138/428 (32%), Gaps = 24/428 (5%) Query: 351 ITASIMNFLVSM--KEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQS 408 I ++ ++ K+ ++ ++ + + N+K + Sbjct: 87 IMDYVIKHFAAITFKDVIYIYDQKTGTYRPDEGEINGLIMDLLHSEGYTNNNKIAELFRE 146 Query: 409 LEAGSIFS--ITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPS 466 ++ IT + + + ++G+LD T V + T ++ Sbjct: 147 IQTRIKARNIITKYPFNLVANLIPCKNGVLDPLTQTIVPRSPAYGFTYMINAEYLPEVDC 206 Query: 467 QEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFG 526 + ++ + L+ ++ + ++ G +GK+TL+NL+ G Sbjct: 207 IFIKKYLRTLVAPKD-YEMLLNLGASCLIRESQKKMYLIYNRSGNNGKTTLLNLLTDMLG 265 Query: 527 NQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDC 586 + + D + + + G I + + + IKQ+TG D Sbjct: 266 KENTSSLSLQDFDKG--------GFRVAEIDGKIANISGDLPTTRISDTSVIKQLTGEDF 317 Query: 587 MTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQK 646 + YG Y E N+ + DA++ R ++I F D F +K Sbjct: 318 IMIERKYGQPY-EIQNRAILIFGANEPPVFNDTTDAFYSRMVMIEFPNQF-KVDLDFNKK 375 Query: 647 LETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGEN 706 L+ L A LK +I L I K + + +D+ + +D + Sbjct: 376 LKEPENLSAL---LKVFVDHIPTLLKSGITTDTEAMKNQYLRESDSVYRFFEDNLVKDQF 432 Query: 707 LWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRII 766 + + Y +Y + ++ + + + + + + Sbjct: 433 GEIDLDLVYDVYIDYCTVNKVKKVGKK---AFSVRMSEH---FDVSTRRRGSTGEQIAYL 486 Query: 767 KGLKLKPA 774 KG+K K A Sbjct: 487 KGVKFKSA 494 >gi|9634996|ref|NP_056712.1| putative primase [Streptococcus phage Sfi11] gi|23455861|ref|NP_695091.1| putative primase [Streptococcus phage O1205] gi|7523556|gb|AAF63059.1|AF158600_13 putative primase [Streptococcus phage Sfi11] gi|7523586|gb|AAF63088.1|AF158601_16 putative primase [Streptococcus phage SFi18] gi|2444093|gb|AAC79529.1| ORF13 [Streptococcus phage O1205] Length = 504 Score = 180 bits (455), Expect = 1e-42, Method: Composition-based stats. Identities = 56/359 (15%), Positives = 121/359 (33%), Gaps = 22/359 (6%) Query: 404 STAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEG 463 + ++ E +++ RF+ ++GI D + + + + T VE Sbjct: 122 NMSREYEYNNMYMDFEPEYRDVRRFILVKNGIYDKRKKKLLSFDYKFINFSTIETELVEN 181 Query: 464 EPSQEF-----LDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTL 517 P + E+++ + + +L G + ++ I + G G GK T Sbjct: 182 APKPTINGWDVDSWLLDLMSGDSELVELLWQVIAASLNGNHSYRKSIWLVGNGNDGKGTF 241 Query: 518 MNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA-A 576 LI G + V + + + L + G ++I + ++ + Sbjct: 242 QQLISNLVGLKNVAPLKLNQFSE---------RFGLAIIEGKTVIIGDDVQAGIYVDESS 292 Query: 577 KIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI 636 + G+ ++ N Y T N +N + +RR ++IPF K Sbjct: 293 NFNSVVTGEPVSIEKKGENPYLA-QFKKTVIQSTNAMPVFKNKSNGTYRRIVIIPFKKTF 351 Query: 637 ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAW 696 D ++A K + E ++ L KA P+ + +E ++ +T + Sbjct: 352 GINDDNWAIKDDYINRKEVLEYVL--WKAINLDFDKFSEPKATQERMQEFKEENNTVYKF 409 Query: 697 IDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755 +++ + L Y + + + K L Q +G IK + Sbjct: 410 LNEYLSDVVSTRIPVRFLWDVYRSWCHEGNHTIPK---KSNFEKELAQNLPVGWIKDRQ 465 >gi|9632974|ref|NP_050002.1| putative primase [Streptococcus phage Sfi21] gi|5524055|gb|AAD44107.1|AF115103_37 orf382 gp [Streptococcus phage Sfi21] gi|2352442|gb|AAC72440.1| orf382 [Streptococcus phage Sfi21] Length = 382 Score = 179 bits (454), Expect = 1e-42, Method: Composition-based stats. Identities = 56/358 (15%), Positives = 120/358 (33%), Gaps = 22/358 (6%) Query: 405 TAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGE 464 ++ E +++ RF+ ++GI D + + + + T VE Sbjct: 1 MSREYEYNNMYMDFEPEYRDVRRFILVKNGIYDKRKKKLLSFDYKFINFSTIETELVENA 60 Query: 465 PSQEF-----LDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLM 518 P + E+++ + + +L G + ++ I + G G GK T Sbjct: 61 PKPTINGWDVDSWLLDLMSGDSELVELLWQVIAASLNGNHSYRKSIWLVGNGNDGKGTFQ 120 Query: 519 NLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA-AK 577 LI G + V + + + L + G ++I + ++ + Sbjct: 121 QLISNLVGLKNVAPLKLNQFSE---------RFGLAIIEGKTVIIGDDVQAGIYVDESSN 171 Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637 + G+ ++ N Y T N +N + +RR ++IPF K Sbjct: 172 FNSVVTGEPVSIEKKGENPYLA-QFKKTVIQSTNAMPVFKNKSNGTYRRIVIIPFKKTFG 230 Query: 638 NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWI 697 D ++A K + E ++ L KA P+ + +E ++ +T ++ Sbjct: 231 INDDNWAIKDDYINRKEVLEYVL--WKAINLDFDKFSEPKATQERMQEFKEENNTVYKFL 288 Query: 698 DDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755 ++ + L Y + + + K L Q +G IK + Sbjct: 289 NEYLSDVVSTRIPVRFLWDVYRSWCHEGNHTIPK---KSNFEKELAQNLPVGWIKDRQ 343 >gi|29377412|ref|NP_816566.1| DNA primase domain-containing protein [Enterococcus faecalis V583] gi|29344879|gb|AAO82636.1| DNA primase domain protein [Enterococcus faecalis V583] Length = 794 Score = 179 bits (453), Expect = 2e-42, Method: Composition-based stats. Identities = 54/325 (16%), Positives = 111/325 (34%), Gaps = 22/325 (6%) Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDL-----VSGY-FES 479 + ++G+ +L+T Q T T T +VE +F D ++ Sbjct: 432 RYLIPVKNGVFNLKTKQLEPFTPNYVFTSKIATAYVENPSLPKFNDWDVESWLNEIACGD 491 Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539 ++ + + A+ G ++ I + G G +GK T L+ G Q + + + Sbjct: 492 AQITTLLWQVISDAINGNYSRKKSIWLMGDGSNGKGTYQQLLYNLIGPQNIATLKINQFS 551 Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAA-KIKQMTGGDCMTARLNYGNTYS 598 + L L+ VI + I+ + + + + + + YS Sbjct: 552 E---------RFKLALLVEKVAVIGDDVGAGIYIDDSSEFNSVVTNETILIEVKNRMPYS 602 Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKW 658 T N+ +RN + +RR +++PF+ + K E E ++ Sbjct: 603 A-RMYVTVIQSTNEMPKIRNKSNGTYRRLLIVPFNASFEGAKDDWRIKEEYINRKEVLEY 661 Query: 659 FLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSY 718 L KA +P+V K EE +Q D + + + + Y Sbjct: 662 VL--HKAVNMDFERFIVPDVSKKLLEEYKQENDPLVDFRETVFKPLGINKIPFYMVYSQY 719 Query: 719 SEYREQELNYDRKRISTRTVTLNLK 743 E+ ++ + K +S + Sbjct: 720 KEFCKEN---NFKPLSKIKFSKQFT 741 >gi|172055298|ref|YP_001806625.1| hypothetical protein cce_5213 [Cyanothece sp. ATCC 51142] gi|171701579|gb|ACB54559.1| hypothetical protein cce_5213 [Cyanothece sp. ATCC 51142] Length = 785 Score = 178 bits (452), Expect = 2e-42, Method: Composition-based stats. Identities = 74/393 (18%), Positives = 144/393 (36%), Gaps = 41/393 (10%) Query: 410 EAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ-E 468 + + + + + L ++G+LDLET + + +T + S + Sbjct: 158 KKMRRLLVCKHWEEKNEKHLPFENGVLDLETSKFHQHAPGFRLTSKLPRQYNPLATSWSK 217 Query: 469 FLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 ++ E+ + + L G Q F ++ G GG+GKST NL+ G Sbjct: 218 TDQWLTEVVKGDEKAKELLLCYMAAVLRGRYDLQVFCYLIGSGGAGKSTFTNLLTQLVGE 277 Query: 528 QYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCM 587 Q + + ++ +IRL G R++I+++ + A K++TGGD + Sbjct: 278 QNTVELDFDELDDK---------HEVIRLFGKRLLILADQDRVGR-KIANFKKLTGGDRL 327 Query: 588 TARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWW--RRYIVIPFDKPIANRDASFAQ 645 + R + N+ S + N V A W RR ++ F+ + Sbjct: 328 SGRYLFKNSMS-FQFKGLACVTSN-PPNVFPASTAKWLLRRMRLVEFNGRF-QPNYHLMD 384 Query: 646 KLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE 705 +LE + L + +I L + E + +D +WI+D E Sbjct: 385 ELE-PELPGLTNYLLNLPEHHIENILKGRA-KELTATTWEHQCRSDGLASWINDWLIQDE 442 Query: 706 NLW----------------EESHSLAKSYSEYREQELNYDRKRISTRTVTLNL---KQKG 746 N + S +L SY Y +Q R +T+ + +L ++ Sbjct: 443 NAFSIIGSNGKEWNDSEYNAYSSTLYGSYVLYCKQTG---RTPKTTQNFSADLIEVTERI 499 Query: 747 FIGGIKREKIEKEWKSKRIIKGLKLKPAFESVD 779 +K+ + K R I+G++L+ + Sbjct: 500 LGWPVKKRRKRIAGKIVRGIEGIRLRTNDDDEQ 532 >gi|224477014|ref|YP_002634620.1| hypothetical protein Sca_1530 [Staphylococcus carnosus subsp. carnosus TM300] gi|222421621|emb|CAL28435.1| conserved hypothetical protein [Staphylococcus carnosus subsp. carnosus TM300] Length = 506 Score = 178 bits (452), Expect = 2e-42, Method: Composition-based stats. Identities = 56/328 (17%), Positives = 104/328 (31%), Gaps = 22/328 (6%) Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE-----FLDLVSGY-F 477 + + +G+ + ET + T + T T ++EG F + + Sbjct: 146 NEPHLIPVNNGVFNRETKKLESFTPDYVFTTKITTNYIEGAVQPTISGWSFDNWLDEVAC 205 Query: 478 ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537 EV + + +L G ++ I + G G +GK T L+ G V + + ++ Sbjct: 206 GDREVFTLLWQVINDSLNGNYTRKKAIFLVGDGNNGKGTFQTLLSNLIGFDNVASLKVNE 265 Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI-NAAKIKQMTGGDCMTARLNYGNT 596 P L G +VI + I +++ + GD + + Sbjct: 266 FDHEFKPSV---------LEGKTLVIGDDVPVGVNIEDSSNFNSVVTGDSILVNVKKKQP 316 Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAK 656 Y T N +N RR +++PF+ + K + E Sbjct: 317 YRAV-FRCTVIQSTNGMPRFKNKTGGTNRRLLIVPFNADFNGTKENPDIKEKYLNNKEVL 375 Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAK 716 ++ L KA +P+V EE +Q D + D + + Sbjct: 376 EYVL--YKAINLDFGKFIVPKVSADMLEEYKQDNDPVYDFKVTEFDTWKIDKVPKSVVYY 433 Query: 717 SYSEYREQELNYDRKRISTRTVTLNLKQ 744 Y + E N +S R Q Sbjct: 434 RYKVFCE---NSGYHALSERKFYKTFNQ 458 >gi|66391797|ref|YP_238521.1| primase [Streptococcus phage 2972] gi|56718454|gb|AAW27960.1| primase [Streptococcus phage 2972] Length = 505 Score = 178 bits (452), Expect = 3e-42, Method: Composition-based stats. Identities = 55/358 (15%), Positives = 122/358 (34%), Gaps = 22/358 (6%) Query: 404 STAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEG 463 + ++ E +++ RF+ ++GI D + + + + + T VE Sbjct: 122 NMSREYEYNNMYMDFEPEYRDVRRFILVKNGIYDKKKKKLLSFDYKFINFSTIETELVEN 181 Query: 464 EPSQEF-----LDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTL 517 P + E+++ + + +L G + ++ I + G G GK T Sbjct: 182 APKPTINGWDVDSWLLDLMSGDSELVELLWQVIAASLNGNHSYRKSIWLVGNGNDGKGTF 241 Query: 518 MNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA-A 576 LI G + V + + + L + G ++I + ++ + Sbjct: 242 QQLISNLVGLKNVAPLKLNQFSE---------RFGLAIIEGKTVIIGDDVQAGIYVDESS 292 Query: 577 KIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI 636 + G+ ++ N Y T N +N + +RR ++IPF K Sbjct: 293 NFNSVVTGEPVSIEKKGENPYLA-QFKKTVIQSTNAMPVFKNKSNGTYRRIVIIPFKKTF 351 Query: 637 ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAW 696 D ++A K + E ++ L KA + P+ + +E ++ +T + Sbjct: 352 GINDDNWAIKDDYINRKEVLEYVL--WKAINLDFDKFNEPKATQERMQEFKEENNTVYKF 409 Query: 697 IDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754 +++ + L Y + + + K L Q +G K + Sbjct: 410 LNEYLSDVVSTRIPVRFLWDVYRSWCHEGNHTIPK---KSNFEKELAQNLPVGWTKEK 464 >gi|253581967|ref|ZP_04859191.1| phage primase [Fusobacterium varium ATCC 27725] gi|251836316|gb|EES64853.1| phage primase [Fusobacterium varium ATCC 27725] Length = 667 Score = 178 bits (450), Expect = 4e-42, Method: Composition-based stats. Identities = 88/702 (12%), Positives = 202/702 (28%), Gaps = 114/702 (16%) Query: 57 VCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKK 116 GV + D+D + + A + + + V K K FR K + K Sbjct: 44 FFGVLAPGIAYIDVDIR--EQAEFLYNVIQEIGLKCKVFETIKGK-HFIFRDPKGYLDKT 100 Query: 117 KTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKF 176 T + I+ + A + + ++ +++ L F Sbjct: 101 ITKQYLACG--IVADSKSGNANGV-----EYLKKVGELTEREIVYGQEFPVNELDELPTF 153 Query: 177 FQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAV 236 + D+ + + GS ++ + Sbjct: 154 LKPFKSLGDFDENINKDTGELEPPT--------------ALFNDLGEGSRNDTLT----- 194 Query: 237 HHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGK 296 H + G + +++ Sbjct: 195 RHILALQNVGFTDRDEI---------RDIIRVINSY------------------------ 221 Query: 297 LIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIM 356 A D K + +I + F+ Y + S Sbjct: 222 -----FFADPLED---KELETILRDETFIKGEKENIQYNF--------------FSESGK 259 Query: 357 NFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEEN--SKAKSTAQSLEAGSI 414 + + E + + + + + + D + + N K + + + Sbjct: 260 FYFNNFAEFLKEQYGIIKIDGELHCYEDGIYVKDRGIEKLMINIIPNLKDSNRKEVLKYL 319 Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVS 474 IT + ++ + ++GI ++ + + + + IT + S+ ++ Sbjct: 320 DLITEEKERDNTGLIAFKNGIYNILSDELLPFNPKYIITNKIPWNYNLLAYSELMDTTLN 379 Query: 475 GY-FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533 + + +E + +G L N+ + I G +GKST + ++ Y G Sbjct: 380 KFAYGNENIRLLIDEVIGYILFAKNELGKAFIITGDKSNGKSTFLKILMYTVGKDNTSAL 439 Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593 +DI+ +R + + G + I + A +++ GD + A Sbjct: 440 SLNDIINSRFR--------VYEVAGKLLNIGDDIGSGYIPEAEIFRKLVTGDIIVAEQKG 491 Query: 594 GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR----DASFAQKLET 649 N + N +++P A RR I+IPF + D F K++T Sbjct: 492 KNP-IKFNCYAKFIFSANDIPRIKDPTGATARRIIIIPFKNSFTKKSKDYDPYFLDKIKT 550 Query: 650 KYTLEAKKWFLKGVKAYIS--KGLDVDIPEVCLKAKEEERQGTDTYQAWI---DDCCDIG 704 + + + G+ + E + EE + + + I +D + G Sbjct: 551 QEC--IEYLIVIGIIGLKRIIQNKGFTETEETRQLLEEFNRNNNPVLSIIAQLED--EKG 606 Query: 705 ENLWE--ESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQ 744 E + + + + Y + E K ++ T +K+ Sbjct: 607 EEFYIGMDKNLVYNYYYSEAQSEGM---KPVTLTNFTRTMKK 645 >gi|254521909|ref|ZP_05133964.1| primase, putative [Stenotrophomonas sp. SKA14] gi|219719500|gb|EED38025.1| primase, putative [Stenotrophomonas sp. SKA14] Length = 549 Score = 178 bits (450), Expect = 4e-42, Method: Composition-based stats. Identities = 75/457 (16%), Positives = 151/457 (33%), Gaps = 52/457 (11%) Query: 350 KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSL 409 +I S+ + S + E E + + + + + Sbjct: 77 EIDFSLYQWNESEGIWAPQATREVEAHALDWMRKHAPEDAKQSSATSCVKTAILEMIRLP 136 Query: 410 EAGSIFSITSDLLDSSSRFLGEQDGILDLETG-------QKVKPTKELYITKSTGT---- 458 S + + G L++ + + + IT Sbjct: 137 GMKLPES-------QHRAIVPLKGGYLEILKDANKKAYIEYLPADPKHGITSLVPAKLNL 189 Query: 459 --------PFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVG 510 +P + + + V + +++ + + G G Sbjct: 190 DQVRSGRYTPKPLDPKSRWAKYLDRFMPDMAVRGLLQEAMASSVMPMCLE-KAFLLLGSG 248 Query: 511 GSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN 570 +GKSTL+++++ + + D + A A+ +L + V+ + Sbjct: 249 SNGKSTLLHVLRAIHPKNTAVRIDKLD---GQFAMAPLASKTLYLATEAPKVLSDPIQQ- 304 Query: 571 DEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVI 630 +K + D M+A + Y+ T F+ N V + + +WR+ +I Sbjct: 305 ------VLKALISRDPMSAENKGKDAYTTV-PRGTLFLALNAMFSVTSHEHGFWRKICMI 357 Query: 631 PFDKPI----ANRDASFAQKLET--KYTLEAKKWFLKGVKAYISKGLDVDI-PEVCLKAK 683 PF+ + +RD F +KL W L+G I +G + PE Sbjct: 358 PFNVRLAENDKDRDPDFHKKLTEDPAEMAVIIDWLLEGAMRLIERGGLPEEMPEAVKALA 417 Query: 684 EEERQGTDTYQAWIDDCCDIGEN-LWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNL 742 E+ RQ TDT ++ + I E W + + + Y Y EL RK + + + Sbjct: 418 EQTRQETDTTASYFAERMVIEEEGTWTDKNDIYADYRNYVLDEL--GRKPVGAEELWKRV 475 Query: 743 KQKGFIGGIKREKIEKEWKSKRIIKGLK---LKPAFE 776 +++ K++K K K++R L+ LKP E Sbjct: 476 RERMPGLQQKQKKATKGSKAER-WVNLRVGGLKPRLE 511 >gi|294508904|ref|YP_003566115.1| conserved hypothetical protein containing phage/plasmid primase P4, C-terminal domain [Salinibacter ruber M8] gi|294342041|emb|CBH22707.1| conserved hypothetical protein containing phage/plasmid primase P4, C-terminal domain [Salinibacter ruber M8] Length = 716 Score = 178 bits (450), Expect = 4e-42, Method: Composition-based stats. Identities = 49/354 (13%), Positives = 109/354 (30%), Gaps = 27/354 (7%) Query: 428 FLGEQDGILDLETGQKV--KPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDY 485 ++ +G L L+ E + + G F + S+E + Sbjct: 375 YIPVANGDLFLDGDSVRLEDADPERAPLTRSDAAWDPGADCPCFERHLKNVMPSKEERET 434 Query: 486 FTRCVGMALLGG-NKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544 G LL + + + G SGKST + +++ G+ ++ + P Sbjct: 435 LQEYAGYCLLHWDIPLHKALFMVGPTASGKSTTLTVLRKLMGSVSKLS-PQQLVNGRFGP 493 Query: 545 EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604 L G+ I S+ + + K++ GD + Y Y + Sbjct: 494 ---------AELEGAWANIRSDISSAVLQDIGLFKEVVAGDPIFVERKYEQGY-NIRPTA 543 Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDA----SFAQKLETKYTLEAKKWFL 660 N+ DDA++RR +++ F I + +LE +W + Sbjct: 544 KHLYSANQLPEASIDDDAFYRRILLVSFPTTIPKDERVNRSELDDRLEL-ELDGVLRWAV 602 Query: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIG---ENLWEESHSLAKS 717 +G+ I++ + + + + + + D+ + + + Sbjct: 603 EGLMEVINQN-EFTHDLSPEQTRRRWESRSSSIGRFKVTALDVTGDHAEDFIPKEKVFSA 661 Query: 718 YSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771 Y+++ ++T L Q + + R G +L Sbjct: 662 YTQFCNDRGLAKE---DQNSLTRTLTQ-DPKIADAQRTPPGHSRQVRCYTGFRL 711 >gi|320353144|ref|YP_004194483.1| phage/plasmid primase, P4 family [Desulfobulbus propionicus DSM 2032] gi|320121646|gb|ADW17192.1| phage/plasmid primase, P4 family [Desulfobulbus propionicus DSM 2032] Length = 548 Score = 178 bits (450), Expect = 4e-42, Method: Composition-based stats. Identities = 62/373 (16%), Positives = 117/373 (31%), Gaps = 32/373 (8%) Query: 414 IFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGE-PSQEFLDL 472 + + + L +G L+ Q + + + F Sbjct: 186 MITTDDTFFTNVPVGLACANGFHHLKDHQICVEALTAPHRQRVMVDVTPQQQKTPLFDIF 245 Query: 473 VSGYF-----ESEEV-MDYFTRCVGMALLG-GNKAQRFIHIRGV-GGSGKSTLMNLIKYA 524 + F EE + G +LG + Q+ I G +GK T+ +I Sbjct: 246 LHDTFKSSEPGDEEQQVTLLQEIFGAIILGLMAQFQKAILFYDPFGRAGKGTMERIITNL 305 Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGG 584 ++V L L G R+ + E ++ I +A+ K +TGG Sbjct: 306 IPGEFVSAVSPFKWNGE---------YYLASLAGKRLNSVGELPDSKPIPSAEFKTVTGG 356 Query: 585 DCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFD----KPIANRD 640 D + R + + N + + +A++ R+++I F + D Sbjct: 357 DLVAGRHPGQRPF-TFKNEAAHLFMSNHLITTNDHSEAFFCRWLIIEFPNSRLRTGLPID 415 Query: 641 ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDC 700 A ++ K W L+G K + G + + E+ R ++ +I + Sbjct: 416 PGIADRIIQKELSGIAHWALEGAKRLLENG-KFSNSKAHDRLMEKWRLTANSLLEFIHEE 474 Query: 701 CDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEW 760 C G+ +Y E+ + R S V L +G E Sbjct: 475 CIRGDEHKVRRAEFYAAYKEWCKDNG---RHPFSKGRVKELLSHNIGLGVTHTSLDGYE- 530 Query: 761 KSKRIIKGLKLKP 773 I +G+ KP Sbjct: 531 ----IFRGVAFKP 539 >gi|310826736|ref|YP_003959093.1| phage/plasmid primase [Eubacterium limosum KIST612] gi|308738470|gb|ADO36130.1| phage/plasmid primase [Eubacterium limosum KIST612] Length = 431 Score = 177 bits (448), Expect = 6e-42, Method: Composition-based stats. Identities = 62/437 (14%), Positives = 135/437 (30%), Gaps = 23/437 (5%) Query: 340 NVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEEN 399 N +W KI + + +++ + T Y + + Sbjct: 2 NNPVWIDEKGKIIEPEYCRDFLSRHPMRCINDRFYTVDGPLPDENKLKRTIYEEISPWLH 61 Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTP 459 K T + + + +D L + +G L+ + + Y + Sbjct: 62 DKVAQTVEQVIKALKLAAYADPLPLQCDRIHVANGTYFLDGTFTEE---KEYCSNRLSVS 118 Query: 460 FVEGEPSQE-FLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLM 518 + P+ E +L +S E E + +G L+ K Q+ + + G GG GKS + Sbjct: 119 YRADAPAPEHWLRFISELLE-PEDIPALQEYLGYCLIPSTKGQKMLMLIGKGGEGKSRIG 177 Query: 519 NLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKI 578 ++ FG ++ + + + L G +++ + + N I Sbjct: 178 VVMNTIFG---------LNMNTTSIQKVENSRFARADLEGKLLMVDDDLDMNALTKTNYI 228 Query: 579 KQMTGGD-CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637 K + + M +Y + + D ++RR I++ A Sbjct: 229 KSIVTAELRMDLERKREQSYQGLLYVRFLCFGNGALTALHDRSDGFFRRQIILTTKDKPA 288 Query: 638 NR-DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAW 696 +R D F + W L+G++ I+ I + + + + Sbjct: 289 DRFDDPFLAEKLIAEKEGIFLWMLEGLRRLIANHYHFTISQRAKDNITSAVREANNILDF 348 Query: 697 IDDCCDIG--ENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK--GFIGGIK 752 +D +G + + +L +Y + E +S ++ L Q + Sbjct: 349 LDSEGYVGFKADYEASTKNLYAAYKRWCEDN---AENPLSPKSFANQLSQNAERYHLEPV 405 Query: 753 REKIEKEWKSKRIIKGL 769 K R G+ Sbjct: 406 NNLHIGGGKRCRGYMGI 422 >gi|319648621|ref|ZP_08002834.1| Gp60 protein [Bacillus sp. BT1B_CT2] gi|317389313|gb|EFV70127.1| Gp60 protein [Bacillus sp. BT1B_CT2] Length = 223 Score = 177 bits (448), Expect = 7e-42, Method: Composition-based stats. Identities = 51/198 (25%), Positives = 78/198 (39%), Gaps = 16/198 (8%) Query: 577 KIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI 636 +KQ+TGG+ M+AR Y E F F N V+ D+ WRR +IPF I Sbjct: 1 MVKQITGGEKMSARFL-RQEYFEFTPEFKVFFTTNHKPIVKGSDEGIWRRIRLIPFTVTI 59 Query: 637 ANR--DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQ 694 D QKL +W ++G + +GL PE KA E R+ D Sbjct: 60 PKEKVDKKLPQKL-AAEMPGILRWAVEGCLKWQKEGLG--EPEAIKKATEGYREDMDILG 116 Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754 ++ + C + E+ L K Y + + + + R ++ +GF Sbjct: 117 PFMQERCVQHPSAKIEAKELYKDYKNWCFENDEIE---LKNRAFYRQIEIRGF------- 166 Query: 755 KIEKEWKSKRIIKGLKLK 772 K E K+K G+ L Sbjct: 167 KKENGAKNKVFFYGIGLN 184 >gi|255018276|ref|ZP_05290402.1| phage/plasmid primase, P4 family protein [Listeria monocytogenes FSL F2-515] Length = 284 Score = 175 bits (444), Expect = 2e-41, Method: Composition-based stats. Identities = 51/281 (18%), Positives = 103/281 (36%), Gaps = 18/281 (6%) Query: 300 KGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFL 359 K A F D N F Y+ K WY + + K Sbjct: 10 KAKKAYSFDDTGNAERFRDEYNNSVRYSYVNKGWYYYNSKIWMFDNTGAIK--------- 60 Query: 360 VSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITS 419 + ++ ++ S + + + + EA + + Sbjct: 61 TLADRVIQNMKKDFAYMESESDIEKAFVKHLKATRGNRGKTNMLK-----EAEHLMPVLP 115 Query: 420 DLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE- 478 + D + F Q+G +DL++G+ + + TK + + + + + + F+ Sbjct: 116 EQFDVNKHFFNTQNGYIDLKSGRLNEHDRSKMFTKISHIEYTDKIDAPLWNSFLLDIFDH 175 Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538 +E++DY + VG +L G Q + G G +GKS +++I FG+ + + Sbjct: 176 DKELIDYVQKAVGYSLTGSTSEQVMFILFGNGRNGKSVFLDIINDVFGSYSTNIQPQTIM 235 Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIK 579 ++ ++ AN + RL +R V +E NE ++ IK Sbjct: 236 VKQ---QSSGANSDIARLHAARFVTTTEPNEGVRLDEGXIK 273 >gi|295104245|emb|CBL01789.1| phage/plasmid primase, P4 family, C-terminal domain [Faecalibacterium prausnitzii SL3/3] Length = 568 Score = 174 bits (441), Expect = 4e-41, Method: Composition-based stats. Identities = 68/410 (16%), Positives = 132/410 (32%), Gaps = 26/410 (6%) Query: 374 EDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQD 433 + + N DY N K L + + ++ Sbjct: 175 TQLDSKQLIKLYRQNVDYELNNESSLRGYKDLYDCLVTDPQIECSEPE--DEPIYAPLEN 232 Query: 434 GILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGM 492 GILDL + + + + Q F + + + + +G Sbjct: 233 GILDLMEWKLYPHSPDQITFTCIKAKYDPQAKCQIFEEYLQRVTGGDSLLSERVWMAIGY 292 Query: 493 ALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS 552 L+ + + FI ++G+G SGKS L + I+ + + + + + + Sbjct: 293 LLIYPARGKFFIFMKGIGNSGKSVLGSFIRRLYPKESISSIRLKQMKNEFGMSS------ 346 Query: 553 LIRLMGSRIVIISETNENDEINA--AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVP 610 L + I + + +++KQ+TGGD + + + Sbjct: 347 ---LANAVINFDMDMPSSKIDEEAASRLKQITGGDSINVPRKFRDDALLER-RIKFVFSS 402 Query: 611 NKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDASFAQKLETKYTLEAKKWFLKGVKAYIS 668 N + + DDA +R I +PF+ I + +D K+ K L+ + + Sbjct: 403 NHPIIIDGEDDALLKRIIYLPFNYAIPDDQQDPDLGDKIW-KERDAIATKALRYARKLVK 461 Query: 669 KGLDVDIPEVCLKAKEEERQG-TDTYQAWIDDCCDIGEN-LWEESHSLAKSYSEYREQEL 726 AK R T ++ + CD E+ + L +YS+Y +++ Sbjct: 462 LNYIFPEIPQMDNAKCIVRDSIAKTVGKFVQESCDKSESKAVTATEDLYNAYSDYCKEKN 521 Query: 727 NYDRKRISTRTVTLNLKQKGFIGGIKREKIE---KEWKSKRIIKGLKLKP 773 + S + T L Q R E KG+KL+P Sbjct: 522 MWAC---SQKAFTKELTQMKIEHTRFRCTGEDMIARKNPVSAFKGIKLRP 568 >gi|313896410|ref|ZP_07829961.1| nucleoside triphosphatase, D5 family [Selenomonas sp. oral taxon 137 str. F0430] gi|312974834|gb|EFR40298.1| nucleoside triphosphatase, D5 family [Selenomonas sp. oral taxon 137 str. F0430] Length = 764 Score = 174 bits (441), Expect = 5e-41, Method: Composition-based stats. Identities = 108/764 (14%), Positives = 220/764 (28%), Gaps = 87/764 (11%) Query: 31 QRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHG 90 W + + G GF+ + DID + + T Sbjct: 39 PHRHSWVTYDEALTASKEKHFDGIGFII---PEGYVFLDIDHR--GLDDPLVQTMLRRFD 93 Query: 91 TPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTW 150 T I + ++E K + +G + Y HPKTK E Sbjct: 94 TYAEHSVSGEGIHFYGKCDRE---KIPSYIDGKGQRKLDKT-----YYTKHPKTKIELYV 145 Query: 151 TTPPHRFKV------EDTPLL--SEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNN 202 +RF V D PL + + L K + K+ + T + Sbjct: 146 GGMTNRFAVFTGNVISDKPLKDCTAAVLTTLDKDMRRSKKQKYSAKRDGDRNIYNTISKL 205 Query: 203 RQYTNREITAFLSCFGE--EFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTY 260 R+ N E A L G+ + + S + + + I R+ + + Sbjct: 206 REQKNGEKFAALFDRGDITGYGSPSEADAALCALIAFRTGADAEMIDAIFRQSALYREKW 265 Query: 261 DEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYK 320 + E++ E RS ++ +M + Y Sbjct: 266 EREDYREATIAVGI-EACQGVFHRSKMEHPYFIRFHEKTGAP-------YVEPSMLAKYV 317 Query: 321 KGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNS 380 + H Y + K Y++ +I A D + Sbjct: 318 REHLDYILVRNS--GKQGMIKYVYERGAYRIYA-----------DDMMKGVIKKFIADYD 364 Query: 381 KSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLET 440 + + A L A + + + LD+ R + ++G+L + Sbjct: 365 EELVRIK--------------PINEAFQLLATDLDYVPQEKLDADERLINFRNGLLYVSA 410 Query: 441 GQK--VKPTKELYITKSTGTPFV-EGEPSQEFLDLVSGYFE-SEEVMDYFTRCVGMALLG 496 + + + T + + P+ F + + +G + Sbjct: 411 AEAVLHPHSPKAMSTIQIPCNWTGKETPTPVFDRYMHILTGGDAAIRQLLLEFMGACISN 470 Query: 497 GNKAQ--RFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLI 554 + + + + G G +GKS L +L++ G I + ++I A Sbjct: 471 VKGWRMKKALFLVGEGDTGKSQLKSLVERLLGTGNYIGIDLAEIE---------ARFGTG 521 Query: 555 RLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHL 614 L G+R+ S+ + K++TGGD + A + E + N+ Sbjct: 522 TLYGTRLAGSSDMSFLTVAELKTFKKITGGDSLFAEFKGQQGF-EFTYGGLLWFCMNRLP 580 Query: 615 FVRNPDD-AWWRRYIVIPFDKPIAN--RDASFAQKLETKYTLEAKKWFLKGVKAYISKGL 671 D + R + + PI +D +K+ + ++ I+ G Sbjct: 581 KFGGDDGKWVYNRIMAVNCPNPIPKDAQDKLLLEKMY-AEREGIVYKAVTALQTVIANGY 639 Query: 672 DVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLW----EESHSLAKSYSEYREQELN 727 PE +E R+ +T + ++C + E + + Y + + + Sbjct: 640 RFSEPESIHVIRETYRRENNTVICFFEECMEEREESKYTDGATTGRIYNVYKAWCQDNNH 699 Query: 728 YDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771 K + + L G + I ++ + L Sbjct: 700 GFSK--TAKEFRDELAAH---VGSTFKDISLHTRTGTYYRKFTL 738 >gi|329767786|ref|ZP_08259302.1| hypothetical protein HMPREF0428_00999 [Gemella haemolysans M341] gi|328838887|gb|EGF88481.1| hypothetical protein HMPREF0428_00999 [Gemella haemolysans M341] Length = 626 Score = 174 bits (440), Expect = 6e-41, Method: Composition-based stats. Identities = 53/372 (14%), Positives = 128/372 (34%), Gaps = 25/372 (6%) Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTP 459 + + A + + ++ ++G+ +++T + + T ++ IT Sbjct: 267 NFTIGQRREALAMLELLVEQEYQLRDYNYIAFKNGLYNIKTDEFISFTPDIIITNKINWN 326 Query: 460 FVEGEPSQEFLDLVSGY-FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLM 518 + + ++++ ++E+ +G N+ ++ + G +GKST + Sbjct: 327 YNPKSYASLTDEILNNLAINNKEIRMLIEEMIGYTFYRRNELRKAFILTGQKQNGKSTFL 386 Query: 519 NLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKI 578 N++K G++ + + S ++ I + + + + Sbjct: 387 NILKELLGSKNTSVLDIKHL---------NDRFSTAMMVNKLANIGDDISNKKLYDTEQF 437 Query: 579 KQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDD--AWWRRYIVIPFDKPI 636 K++ G+ +TA + + E N + + DD A R +++PF Sbjct: 438 KKIVSGEKITAEQKGRDKF-EFTPYCKLIYSANNIPKLGDGDDAPAVLSRLVIVPFKAYF 496 Query: 637 ----ANRDASFAQKLETKYTLEAK-KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTD 691 + L T+ ++E L G+K + E + EE + D Sbjct: 497 DSSSPDYKPFIIDDLITEESMEYLINLGLAGLKRVLKNR-KFTESEYTNREFEEYKNEID 555 Query: 692 TYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRK-----RISTRTVTLNLKQKG 746 ++ + + + E S + Y EY +E + R L K + Sbjct: 556 PVSEYL-ETLNADLIVNEMSGKIYSEYMEYCMREGYENIPINAFTRKVNNFFNLTTKNRR 614 Query: 747 FIGGIKREKIEK 758 G I + ++K Sbjct: 615 VDGMIVKTYVKK 626 >gi|325832761|ref|ZP_08165524.1| nucleoside triphosphatase, D5 family [Eggerthella sp. HGA1] gi|325485900|gb|EGC88361.1| nucleoside triphosphatase, D5 family [Eggerthella sp. HGA1] Length = 596 Score = 173 bits (439), Expect = 8e-41, Method: Composition-based stats. Identities = 52/355 (14%), Positives = 122/355 (34%), Gaps = 27/355 (7%) Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLD-----------L 472 + +G+ D + + E T+ + FVEG + + Sbjct: 196 KDPELVVVNNGVYDYTSKFLMGFDPEFVFTEKSHVDFVEGAKNPVIHNDDDGTDWDVESW 255 Query: 473 VSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGV-GGSGKSTLMNLIKYAFGNQYVI 531 + + + +++ + VG L + + G +GK TL L++ G+ Sbjct: 256 MEEFSDDPAMVNLLWQVVGATLRPNVTWNKTAWLYSDSGNNGKGTLCTLMRNLLGDGAWA 315 Query: 532 NAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK-IKQMTGGDCMTAR 590 + L L +I E + ++ A +K + D Sbjct: 316 SLPLKAFSN---------PFMLEPLSRVSAIITDENDTGTFVDDAAALKSIITHDPFLMD 366 Query: 591 LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETK 650 + + S + N+ +R+ ++ +RR +VIPF+K R+ + + K Sbjct: 367 RKFKDPRS-VLFNGFMVQCVNELPKLRDKSESLYRRLLVIPFEKRFEGRERKYIKDDYLK 425 Query: 651 YTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEE 710 ++ L + A + ++D+P+ C+ EE + D + + ++ Sbjct: 426 RKD-VLEYVLYKLLA-TTDYYELDVPQTCIDMLEEFKLENDPVRQFAEEVFAEATWDLLP 483 Query: 711 SHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGG-IKREKIEKEWKSKR 764 + Y + ++ + R + +LK G + ++K+ + + R Sbjct: 484 YKFMYDCYRHWFQRNVPSGR-PVGRNAFLKSLKGLAAECGWLVQDKVRSDGRMDR 537 >gi|268610077|ref|ZP_06143804.1| primase, putative [Ruminococcus flavefaciens FD-1] Length = 467 Score = 173 bits (438), Expect = 1e-40, Method: Composition-based stats. Identities = 61/378 (16%), Positives = 117/378 (30%), Gaps = 30/378 (7%) Query: 407 QSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPS 466 + S+ + F+ Q+G LDL G + T + Sbjct: 102 LQIMDALRLYTYSEPIPPDMNFIHVQNGKLDLN-GNFYPHR--EFCTNRLNICYDPNIRK 158 Query: 467 -----QEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLI 521 ++FL + + E + +G L+ K Q+ + + G GG GKS + ++ Sbjct: 159 GAYYPEKFLTFLMELL-TPEDVTTLQEYLGYLLIPSTKGQKMMFLIGQGGEGKSRIGIVL 217 Query: 522 KYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM 581 + F + + + N L +++ + + IK + Sbjct: 218 REIFMD--------NMLTGNVHR-IENDRFFRYNLKDRLLMVDDDMQMQALSSTGYIKNL 268 Query: 582 TGGD-CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR- 639 + + + + + + + RR I++ P + Sbjct: 269 VTAETPIDVEAKGKQSEQALLYTRLLCFGNGSPKTLYDKSKGFSRRMIILT-TLPPPEKR 327 Query: 640 --DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWI 697 D A+K + W G+ ++ I + + E Q ++ Sbjct: 328 IIDPYIAEK-FIAEKEKIFCWMYDGLLRLLANNYRFTISDKARQNVMETMQDNCNITEFL 386 Query: 698 D--DCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE- 754 + D GENL S +L SY + E KR + L+Q IK + Sbjct: 387 EDTDRVQYGENLRVASSALYDSYYHWCEDNALTALKRET---FVSWLRQNEAAYHIKYDL 443 Query: 755 KIEKEWKSKRIIKGLKLK 772 I R KG+ LK Sbjct: 444 NIPSGSSHVRGFKGIALK 461 >gi|78212114|ref|YP_380893.1| ATPase-like [Synechococcus sp. CC9605] gi|78196573|gb|ABB34338.1| ATPase-like [Synechococcus sp. CC9605] Length = 902 Score = 173 bits (437), Expect = 1e-40, Method: Composition-based stats. Identities = 108/806 (13%), Positives = 224/806 (27%), Gaps = 146/806 (18%) Query: 55 GFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILI---PFRMNKE 111 G VC E ID + + TP + + K + FR Sbjct: 121 GVVCMSYE-------ID-EGLDLEGQKVAWKKANLPTPTIGVFTGNKSIHWSWVFRTPVS 172 Query: 112 GIKKKKTTESTQGHLDILGCGQYF------------VAYNIHPKTKKEYTWTT-PPHRFK 158 + E ++ G +A ++HPKT + PH ++ Sbjct: 173 LTAAEFCRERLSKAIEDANPGVQTDHNLHSAVQVQRLAGSVHPKTGRRAEIIHLSPHTYE 232 Query: 159 VEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTN-----REITAF 213 +++ E L + ++T + + P T + A Sbjct: 233 LDEVLSFLPE----LDEPVDDVTDSGGDFRPADGPEPDDHEQFPDFSTLPPGHLIQALAP 288 Query: 214 LSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKE---------IARRWSKQG------- 257 + + + D+ + R E + + Sbjct: 289 KTLGLLKGLDPDSDDRWRKCWQLSKHLRAGRLHLESLGCTVVDADSIEMTLMSDFIRASG 348 Query: 258 ---------------------STYDEENFNYKWDT-FDFEEIGDTAKKRSTFTSLFYHHG 295 S Y + K F+ E + + L Sbjct: 349 MKGGDVEAALEEHYRPEPCGTSDYCDTYLKRKLRAHFEHEGLWRHS--YGWHKRLVPASN 406 Query: 296 KLIPKGLLASRF-------------------SDAYNKAMFSIYKKGHFLYTADTKAWYKK 336 + F + + Y D W Sbjct: 407 PADWTANIDDSFWTVCRIKTCEVVIENAIGLKGDLTNQPLAHSRGRFVRYNPDQGCWLHV 466 Query: 337 DKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNV 396 +MK +V DL + NK+ + + + ++ Sbjct: 467 S---------------------RDAMKREVADLLLKCFSYNKDEEKVFRFSTASRVKSSI 505 Query: 397 EENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKST 456 E + +D + + +G ++ G+ V E +T S Sbjct: 506 EWLETMTA--------------DAEMDQTP-AIAFANGTYLIDKGELVPHKPEYRLTYSI 550 Query: 457 GTPFVEGE--PSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGK 514 F+ D + F ++ + + + ++ + + G GSGK Sbjct: 551 QGDFIPDCVECPPHLHDFIVSSFGD-HYVEPVQQLLRYMVDPTLPNRKIVMVIGPSGSGK 609 Query: 515 STLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEIN 574 L LI+ F V + +S E + G ++V + + + Sbjct: 610 GVLERLIEKLFPPSCVSSITSSI------KEINSPEKIRQYVSGKQLVAFPDV-QGLQTG 662 Query: 575 AAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK 634 I M G M R + + + I ++ N RR +++ + Sbjct: 663 VTTIYSMVDGGLMAQRNLFTDDTEGVVFTGRVVICSSQAPQFENAGSGMARRALILETQR 722 Query: 635 PIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQ 694 P DA QKL W L+ A + + L V + + A+ D + Sbjct: 723 PAEKPDADLDQKL-AGELGSIVSWALQAKHADVKRVL-VSGNQTFIDAQHNVEADMDVVR 780 Query: 695 AWIDDCCDI-GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKR 753 ++D+CC+ G + + L +++ ++ E K ++ RT+ +KQ +R Sbjct: 781 QFLDNCCEPCGGDYMPKLGVLYETFKQFCEDFGYT--KVLNRRTLLTRIKQALPNLHTQR 838 Query: 754 EKIEKEWKSKRI---IKGLKLKPAFE 776 + +K++ + G +++P + Sbjct: 839 RSVPGTNSTKKVNPQLFGFRIRPEVD 864 >gi|218290889|ref|ZP_03494953.1| phage/plasmid primase, P4 family [Alicyclobacillus acidocaldarius LAA1] gi|218239156|gb|EED06358.1| phage/plasmid primase, P4 family [Alicyclobacillus acidocaldarius LAA1] Length = 1061 Score = 172 bits (435), Expect = 2e-40, Method: Composition-based stats. Identities = 89/549 (16%), Positives = 181/549 (32%), Gaps = 59/549 (10%) Query: 252 RWSKQGSTYDEENFNYKWDTFDFEEI--GDTAKKRSTFTSLFYHHGKLIPKGLLASRFSD 309 + STY E D + G + + + + A Sbjct: 485 EMAGATSTYIEGELEEVLRERDERVLATGGVSSDYWRQQGMRFEIAADWMRNSGARAVEY 544 Query: 310 AYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDL 369 K + + + Y ++ S F+ L Sbjct: 545 DEEKEKYKLVHIDFVRALYEDFPSYYFYSGINL-YNGKYYDFKKSDAAFIKRFM--AHAL 601 Query: 370 SEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFL 429 E + + + + E + + S+ D+ Sbjct: 602 MTEHKHWVTPTMLNNLFTLYKTWLEADEVRNVEDAKVSSV------------FDTDP-LF 648 Query: 430 GEQDGILD---LETGQKVKPTKELYITKSTGTPFVEGEPS----------QEFLDLVSGY 476 Q+GILD L+ + + +T ++ ++ +S Sbjct: 649 PVQNGILDVSSLKHPVMREFSPNYLVTWQIDAAWLREWEMSRRGHWTLAMEQAEKDMSDL 708 Query: 477 FES----EEVMDYFTRCVGMALL-GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVI 531 F EE +G +L QR+ + G G +GK TL+ L++ FG +V Sbjct: 709 FREFDLSEETTTALFEAIGYSLAKFDVDEQRYFVLLGPGYNGKGTLLRLLESIFGK-FVE 767 Query: 532 NAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARL 591 ++++NR + RL + I I+++ + + IK++TG D +TA + Sbjct: 768 TVTLQELVENRFAAS--------RLARASINIVADASNQTLKDTETIKKLTGNDLLTAEM 819 Query: 592 NYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKY 651 Y + + ++ N + ++RR ++ PF + + + A + ++L T Sbjct: 820 KYRDAF-PFRPRIKLWMASNHLPPTPDGSFGFFRRPLIFPFHRQLPMKPADWEKRLRTPE 878 Query: 652 -TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID-------DCCDI 703 +K ++G + + L+A+ + D QA I D + Sbjct: 879 AKSYLLYLAVKHYLNMRAEGRKLTESKEMLRARMDYWAANDIVQAAIQYGIFEFPDSQNK 938 Query: 704 GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIE-KEWKS 762 + +LA E +EL RK++ST T+ L +G IK ++ K Sbjct: 939 DRKDYVVPRALATKAIELFAEEL--GRKKVSTNTLLERL--RGNYADIKEVFATCEDGKR 994 Query: 763 KRIIKGLKL 771 + + +G++L Sbjct: 995 RHVWEGVRL 1003 >gi|329768217|ref|ZP_08259718.1| hypothetical protein HMPREF0428_01415 [Gemella haemolysans M341] gi|328837416|gb|EGF87045.1| hypothetical protein HMPREF0428_01415 [Gemella haemolysans M341] Length = 814 Score = 172 bits (435), Expect = 2e-40, Method: Composition-based stats. Identities = 89/758 (11%), Positives = 210/758 (27%), Gaps = 79/758 (10%) Query: 62 EQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTES 121 + L DI+ + E L + + + Sbjct: 73 TRNLIVIDIEDTGLSSQEVQTIIQEKLASY----------KYLLYSTISHKPNNPRLRLV 122 Query: 122 TQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEIT 181 + DI+ N+ +Y + +++ P+ ++ K + Sbjct: 123 LEPSRDIVKDEYKPTIQNVIQLLNIKYD-KSSCTWSQLQGLPIAVRDNEFIFIKHLDGLP 181 Query: 182 VPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETR 241 P+ + K T ++ + + + + ++ I +++ Sbjct: 182 YPVQEAVKEEKKVITNYTASDTNTLLTD--EEYTEMFKRYLELDYEN-INSDENNYNKAL 238 Query: 242 GSSKGKEIARRWSKQGSTYD-EENFNYKWDTFDFEEIGDTAKKRSTFTSLF--YHHGKLI 298 G I + +YD + + + + + Sbjct: 239 GI--LLSITYDFCYNIISYDVACECSDLLANIGKNPEKYRQENQDKINHAIKSWENNPNY 296 Query: 299 PKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKA---------WYKKD-KNNVYIWSLTL 348 + + K +L W I + T+ Sbjct: 297 FDNEKSYSMLQRFEIVGNKKDKNFSYLVRYKLNKPILNTGELHWRLYTAGEQWRIENTTV 356 Query: 349 DKITASI----MNFLVSMKEDVFDLSEEPEDNNKNSKS--------------PRFWFNTD 390 ++ T + + F V K + + N+++ + Sbjct: 357 NEKTGKVTVPQVPFYVIAKFLLTHIPIIKSGANEDTALLFFYDFSKGIYTSNDDYIKTCI 416 Query: 391 YRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKEL 450 + + + +K K + L A + F LD + +G+ + +T + Sbjct: 417 KKIEIRYKLTKLKDVTEDLRANTRFR-KPQRLD---YLIAVGNGLFNTKTKTLEPFDPKH 472 Query: 451 YITKSTGTPFVEGE---------PSQEFLDLVSGY-FESEEVMDYFTRCVGMALLGGNKA 500 +IT T + F + + +E++ + + A+ Sbjct: 473 FITAKVDTNYNTKALTNYELIKNTYFNFDEWLKSIACNDDEIVTLLWQLINEAINPNKTR 532 Query: 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSR 560 ++ + G G +GKST ++ G+ + + ++ ++ L L G Sbjct: 533 RKIAIMLGNGTNGKSTFRQMMINLIGDINISVSTPHEL---------QSRFGLTSLEGKI 583 Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620 E K+K ++ G+ + + N+ +++ Sbjct: 584 CNYGDEVGTKPLDEMDKLKSISSGESVNYERKNKD-VRNYDFKTLLMFNSNEIPPIKDKS 642 Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCL 680 DA R ++IPF + + + ++ L A IPE Sbjct: 643 DAVLNRLLIIPFKANFEGVKDESIKDEKLNNKI-ILEYIL--YTALHLDFDKFIIPEAVK 699 Query: 681 KAKEEERQGTDTYQAWIDDCCDIGENLWE--ESHSLAKSYSEYREQELNYDRKRIST--- 735 K +Q D+ +++ D G + L Y + + RKRI Sbjct: 700 KQLLNYKQENDSVFSFMLYYKDKGYHHVSCFPVRYLTDDYENFCYENGYNTRKRIGNAFT 759 Query: 736 RTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773 + + NL + +K + KE + I G ++P Sbjct: 760 KHLNDNLTTSNYSYELKNHRFTKENTDELNIYGRNIQP 797 >gi|225377669|ref|ZP_03754890.1| hypothetical protein ROSEINA2194_03320 [Roseburia inulinivorans DSM 16841] gi|225210533|gb|EEG92887.1| hypothetical protein ROSEINA2194_03320 [Roseburia inulinivorans DSM 16841] Length = 459 Score = 172 bits (435), Expect = 3e-40, Method: Composition-based stats. Identities = 54/360 (15%), Positives = 116/360 (32%), Gaps = 24/360 (6%) Query: 420 DLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ-EFLDLVSGYFE 478 + + +G L L+ G + E + + P +L + G Sbjct: 88 EDFPPEPDRIHLSNGTLFLD-GTFAEGKPE-NVRNRFPVAYNPNAPKPVLWLQFLDGLL- 144 Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538 E + +G L+ NK QR + I+G GG GKS + ++ FG S++ Sbjct: 145 YPEDIPTLQEYIGYCLIPSNKGQRMMVIKGSGGEGKSQIGAVLGTLFG---------SNM 195 Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM-TGGDCMTARLNYGNTY 597 + + + L + + + +K + T M +Y Sbjct: 196 KDGSIGKISENRFARADLEHILLCVDDDMRMEALRQTNYVKSIVTAQGKMDLERKGKQSY 255 Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEA 655 + + + D ++RR +V+ + A R D A+K+ Sbjct: 256 QGWMCARLLAFSNGDLQALFDRSDGFYRRQLVLTTKEKPAGRVDDPDLAEKM-KAEVEGI 314 Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD--CCDIGENLWEESHS 713 W +G++ + + + +E ++ + ++D + +L S Sbjct: 315 LLWAFEGLQRLAANNFKFTESDRTRENREAVKRDNNNVYDFLDSDGYVRLKADLSASSKE 374 Query: 714 LAKSYSEYREQELNYDRKRISTRTVTLNLK--QKGFIGGIKREKIEKEWKSKRIIKGLKL 771 L ++Y Y + K R+ + L Q + + R G+++ Sbjct: 375 LYEAYQIYCTENNLPALKP---RSFSEALIACQSRYNLEYCNNVTNAAGRRVRGFLGVEV 431 >gi|257793137|ref|YP_003186534.1| phage/plasmid primase, P4 family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479829|gb|ACV60145.1| phage/plasmid primase, P4 family [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 1061 Score = 171 bits (434), Expect = 3e-40, Method: Composition-based stats. Identities = 93/601 (15%), Positives = 190/601 (31%), Gaps = 65/601 (10%) Query: 200 NNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGST 259 + +T ++ + + + W + E ++ E A S T Sbjct: 439 RPGQDFTEADLPKMDGLPALDNEEEAEEAWKD--GLLSDEQVDPNEAFETADATS----T 492 Query: 260 YDEENFNYKWDTFDFEEI--GDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFS 317 Y E D + G + + + K + Sbjct: 493 YIEGELEEVLRERDERVLATGAVPSDYWRQQGMRFDIAADWMRNSGFRAVEYDEEKEKYK 552 Query: 318 IYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNN 377 + + Y ++ S F+ L E + Sbjct: 553 LVHIDFVRALYEDFPSYYFYSGINL-YNGKYYDFKKSDAAFIKRFM--AHALMTEHKHWV 609 Query: 378 KNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILD 437 + + + E + + S D+ Q+GILD Sbjct: 610 TPTMLNNLFTLYKTWLEADEVRNVEDAKVSSF------------FDTDP-LFPVQNGILD 656 Query: 438 ---LETGQKVKPTKELYITKSTGTPFVEGEPSQE---F-------LDLVSGYFES----E 480 L+ + + +T ++ + VS F E Sbjct: 657 VSSLKRPVMRDFSPDYLVTWQIDAAWLREWEMPRRGHWTLAMEQAEKDVSDLFREFDLSE 716 Query: 481 EVMDYFTRCVGMALL-GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539 E +G +L QR+ + G G +GK TL+ L++ FG +V +++ Sbjct: 717 ETTTALFEAIGYSLAKFDVDEQRYFVLLGPGYNGKGTLLRLLESLFGK-FVETVTLQELV 775 Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599 +NR + RL + I I+++ + + IK++TG D +TA + Y + + Sbjct: 776 ENRFAAS--------RLARASINIVADASNQTLKDTETIKKLTGNDLLTAEMKYRDAF-P 826 Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKY-TLEAKKW 658 ++ N + ++RR ++ PF + + + A + ++L T Sbjct: 827 FRPRIKLWMASNHLPPTPDGSFGFFRRPLIFPFHRQLPMKPADWERRLRTPEAKSYLLYL 886 Query: 659 FLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID-------DCCDIGENLWEES 711 +K ++G + + L+ + + D QA I D + + Sbjct: 887 AIKHYLNMRAEGRKLTESKEMLRTRMDYWAANDIVQAAIQYGIFEFPDSQNKDRKDYVVP 946 Query: 712 HSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIE-KEWKSKRIIKGLK 770 +LA E +EL RK++ST T+ L +G IK ++ K + + +G++ Sbjct: 947 RALATKAIELFAEEL--GRKKVSTNTLLERL--RGNYADIKEVFATCEDGKRRHVWEGVR 1002 Query: 771 L 771 L Sbjct: 1003 L 1003 >gi|325680110|ref|ZP_08159676.1| phage/plasmid primase, P4 family, C-terminal domain protein [Ruminococcus albus 8] gi|324108185|gb|EGC02435.1| phage/plasmid primase, P4 family, C-terminal domain protein [Ruminococcus albus 8] Length = 460 Score = 171 bits (434), Expect = 3e-40, Method: Composition-based stats. Identities = 60/363 (16%), Positives = 115/363 (31%), Gaps = 30/363 (8%) Query: 422 LDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPS-----QEFLDLVSGY 476 L+ F+ Q+G LDL G ++ + + + + FL + Sbjct: 110 LNPDLNFIHVQNGKLDLN-GNFYP--RKEFCQNRLNICYDPNIRNGAYYPERFLTFLMEL 166 Query: 477 FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEAS 536 + E + +G L+ K Q+ + + G GG GKS + +++ F + + Sbjct: 167 L-TPEDVTTLQEYLGYLLIPSTKGQKMMFLIGQGGEGKSRIGIVLREIFMD--------N 217 Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGD-CMTARLNYGN 595 + N L +++ + + IK + + + Sbjct: 218 MLTGNVHR-IENDRFFRYNLKDRLLMVDDDMQMQALSSTGYIKNLVTAETPIDVEAKGKQ 276 Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR---DASFAQKLETKYT 652 + + + + + RR I++ P R D A+K Sbjct: 277 SEQALLYTRLLCFGNGSPKTLYDKSKGFSRRMIILT-TLPPPERRIIDPYIAEK-FIAEK 334 Query: 653 LEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID--DCCDIGENLWEE 710 + W G+ ++ I + + E Q +++ D G NL Sbjct: 335 EKIFCWMYDGLLRLLANNYRFTISDRARQNVMETMQDNCNITEFLEDTDRVQYGGNLRVA 394 Query: 711 SHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE-KIEKEWKSKRIIKGL 769 S +L SY + E KR + L+Q IK + I R KG+ Sbjct: 395 SSALYDSYYHWCEDNALTALKRET---FVSWLRQNEATYHIKYDLNIPSGSSHVRGFKGI 451 Query: 770 KLK 772 LK Sbjct: 452 ALK 454 >gi|317057146|ref|YP_004105613.1| phage/plasmid primase, P4 family [Ruminococcus albus 7] gi|315449415|gb|ADU22979.1| phage/plasmid primase, P4 family [Ruminococcus albus 7] Length = 558 Score = 171 bits (434), Expect = 3e-40, Method: Composition-based stats. Identities = 68/467 (14%), Positives = 163/467 (34%), Gaps = 23/467 (4%) Query: 314 AMFSIYKKGHFLYTADTKAWYKKDKNNVYI--WSLTLDKITASIMNFLVSMKEDVFDLSE 371 ++ + YK + + KK+ + Y W T ++ + + + ++ ++ Sbjct: 95 SLVAPYKDKALRQLKEAEHQEKKEDKSKYPKWWDGT--QVNEDVFCTELLTQHTLYCING 152 Query: 372 EPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGE 431 D + R + + A T + +EA I + + + Sbjct: 153 LFYDIDGEFLISELSKVIYERIKPYVVKNVADRTKRLVEAMKIKCYRPAP-EPNEHTIHL 211 Query: 432 QDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE-FLDLVSGYFESEEVMDYFTRCV 490 ++G L L G V + + G + P E +L V ++VM + Sbjct: 212 KNGTLHLAQGHFVFSQGKQFTMNRLGIEYRSDAPKPERWLKFVQELLNEQDVMT-LQEYM 270 Query: 491 GMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKAN 550 G L+ +AQ+ + I G GG GKS + ++ G + ++ S + A Sbjct: 271 GYLLIPSTRAQKMLMISGNGGEGKSRVGKVLFEIMGYKNSVSGSVSGLD-----NGAAAR 325 Query: 551 PSLIRLMGSRIVIISETNENDEINAAKIKQMTGGD-CMTARLNYGNTYSESPASFTPFIV 609 + ++L+G +I + + + +KQ+ + M ++ + Sbjct: 326 FNKVKLLGKLCMIDDDMDMSALEKTEFLKQLITAEIPMEIEPKGSPSFQALLYTRVIAFG 385 Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAKKWFLKGVKAYI 667 N + + + ++RR +++ +R D +KL +W L+G++ I Sbjct: 386 NNPISALYDRSEGFFRRQMILVAKPVPKDRTADKHLTEKL-LAEKEGIFRWCLEGLERLI 444 Query: 668 SKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDC--CDIGENLWEESHSLAKSYSEYREQE 725 + + I + + + + + +++ + S L +Y + Sbjct: 445 ANDFEFTISDQAKENLKRSERECNNIIPFMESEHDFKFDASGQIHSQELYWAYQSWCRLN 504 Query: 726 LNYDRKRISTRTVTLNLKQK--GFIGGIKREKIEKEWKSKRIIKGLK 770 + +S RT + LK + + ++ + R G++ Sbjct: 505 SLDE---LSRRTFSGYLKSHADDYGITYSENAVNEQGRRARGFLGMR 548 >gi|262113722|emb|CAR95389.1| hypothetical protein [Streptococcus phage phi-m46.1] Length = 610 Score = 171 bits (433), Expect = 4e-40, Method: Composition-based stats. Identities = 84/518 (16%), Positives = 164/518 (31%), Gaps = 67/518 (12%) Query: 148 YTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTN 207 + +D + +E++ +KFF + + ++ +++ Sbjct: 111 FHIYFQIEEVADKDIYVAMKEELCNQYKFFDDNAKDAARFFFGNPNAQVIWHDSWLTIDE 170 Query: 208 REITAFLSCFGEEFYN------------GSHDEWIPVVMA-VHHETRGSSKGKEIARRWS 254 A GE+F GS + + V A + + + ++ + Sbjct: 171 DLFQAVSIDDGEDFDADFYTPPNGPIQQGSRNSTMSVFAAKILKRLGVTQESRDGFDEQA 230 Query: 255 KQG-STYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNK 313 ++ D+ + W + + K S + + L +SD Sbjct: 231 QKCVPPLDKAELDTIWGS--AVRFYNRTIKTS---KGYVAPDAFNRETLKPDDYSDVGEA 285 Query: 314 AMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIM---------NFLVSMKE 364 + + YT T Y + T + + L Sbjct: 286 GVLAREYANRLAYTNATDYLY---------YDGTHWRENKQLALGAVVHFTDEQLAEANA 336 Query: 365 DVFDLSEEPEDNNKNSKSPRFWFNTDYR---------------------RQNVEENSKAK 403 + ++ + + + + + + + ++ Sbjct: 337 FLETAEKQLQSSGIDELTIKAGGKHLEKAVETPLQLKYLKAYLAAKEFHKFVMKHRDYKN 396 Query: 404 STAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQ--KVKPTKELYITKSTGTPFV 461 A A + S+ LDS L + DL G + + E YITK T Sbjct: 397 LMAVYNTAKPMLSVELSELDSDDLLLNTPEATYDLRKGINGQQEHNPEDYITKITAVSPS 456 Query: 462 EGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNL 520 + + + ++ +F +E++DY +GMA +G + I G G +GKST N Sbjct: 457 DQG-MGLWQETLATFFCNDQELIDYVQEIIGMAAIGKVYQEHMIIAYGGGANGKSTFWNT 515 Query: 521 IKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQ 580 I G+ + + M N+ +P L L G R+VI SE E +N A +KQ Sbjct: 516 IARVLGSYSGKLSADALTMSNKR----NVSPELAELKGKRLVIASEMAEGMRLNTAVVKQ 571 Query: 581 MTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRN 618 +T D + A Y + + S T + N V Sbjct: 572 ITSTDEIQAEKKYKDPFH-FVPSHTLVLNTNHLPKVGG 608 >gi|119487229|ref|ZP_01620980.1| hypothetical protein L8106_20932 [Lyngbya sp. PCC 8106] gi|119455784|gb|EAW36919.1| hypothetical protein L8106_20932 [Lyngbya sp. PCC 8106] Length = 842 Score = 171 bits (433), Expect = 4e-40, Method: Composition-based stats. Identities = 88/527 (16%), Positives = 174/527 (33%), Gaps = 49/527 (9%) Query: 286 TFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKK--------- 336 T + + + D F ++ + W +K Sbjct: 212 TLFGVPVYSITGLWNEAEGKGIDDYIQMNGFDKFRDEVLSKAETIEQWKEKHLTSLERQL 271 Query: 337 -DKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTD----- 390 + ++I N L E + E ED S + + Sbjct: 272 SKDSKTPTQKNIANEIAEEYENKLAFNDETNTWMRYEAEDKGVWSPESDRFIRSIISQVV 331 Query: 391 -YRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSR-FLGEQDGILDLETGQKVKPTK 448 + + + K + LE + L+ S L +G+L++ + + V+ + Sbjct: 332 EGKGIKFKTQTYVKQVIECLEVDPRI-LKRKWLERSPNEVLPHHNGVLEIASSKFVEHSP 390 Query: 449 ELYITKSTGTPFVEGE-PSQEFLDLVSGY-FESEEVMDYFTRCVGMALLGGNKAQRFIHI 506 Y+T + + + D + + + + L G + Q+ +H+ Sbjct: 391 LNYLTWTLPREYDPEAKDWSKINDWLDEVSQGNPMIRNLLICFANAVLTGKSGIQKMMHL 450 Query: 507 RGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISE 566 G+GGSGK+T NLI G V++ NR IR R V+ S+ Sbjct: 451 MGLGGSGKTTYSNLITDLIGENNVLDEGVEQFCTNRFTP--------IRAYQKRFVLFSD 502 Query: 567 TNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRR 626 E N + I ++ GG+ +T G + + +V + + W RR Sbjct: 503 EQE-LPKNISNIMKLVGGNNLTGEQK-GKPAFQFRFTGIAMLVSEHPIAQGIRGNGWKRR 560 Query: 627 YIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLD--VDIPEVCLKAKE 684 I +P + +A++D + + L ++++ L DIPE L+ + Sbjct: 561 VIPLPMNLKVADKDRRDLRAEFQSELPAFTNYLLSLSDEFVTQTLRGVSDIPECKLQFWQ 620 Query: 685 EERQGTDTYQAWIDDCCDIGENLWEESH------------SLAKSYSEYREQELNYDRKR 732 R D+ AW++DC + +L SY+++ ++ Sbjct: 621 S-RLREDSIAAWLNDCIICDPEAQTQMGGNKNEADNGTPQTLFGSYADFCKRSGM---NP 676 Query: 733 ISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVD 779 S + L + G+ E +S I G++L+ + D Sbjct: 677 KSVTRFSPELIELC-QSGLSWEVQRFRTRSATQISGIRLRAEGQDDD 722 >gi|254303768|ref|ZP_04971126.1| possible replication protein [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148323960|gb|EDK89210.1| possible replication protein [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 681 Score = 171 bits (432), Expect = 5e-40, Method: Composition-based stats. Identities = 101/795 (12%), Positives = 231/795 (29%), Gaps = 158/795 (19%) Query: 12 QAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGF---------VCGVGE 62 + + GF GDK + K++ + E++ G+ G + Sbjct: 4 EKVFRGFYK---SKGDKGKVPILKYK----TDEQLKDFNKKIVGYDRANKEFDSFVGYLD 56 Query: 63 QPLYAFDIDSKDEKT--------ANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIK 114 D+D+KD+K + + E L + I F+ + + + Sbjct: 57 DGYILIDLDNKDDKGEYDSNKSESKKLIEILEHLGVKTPI-IETPHGHHFYFKCSNKNLT 115 Query: 115 KKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLF 174 S G G +Y +V + E E Sbjct: 116 SVSGVYSLIGLKVDYKLGS-------------KYGCACMKALGEVRPVINDTGEVAELPT 162 Query: 175 KFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIP--V 232 + + T + + + +F+S + + +DE I V Sbjct: 163 FLLNNK-----------VLNNTLKELEDIKASTGGRNSFISKYKYQLLKNGYDELITYQV 211 Query: 233 VMAVHH-ETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLF 291 + +++ KE+ ++ ++ K D+F + K Sbjct: 212 LEIINNYIFDEPLPMKELTTLMRQEHIEASQDTTGIKEDSFLYFTDSGKLKVH------- 264 Query: 292 YHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKI 351 + + M + Y K N ++ ++ T K Sbjct: 265 ----------------TRKMAEKMINDYS-------------IIKIDNYLFSYTGTYYKR 295 Query: 352 TASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEA 411 + ++ +F L ++ N + T+ +++N+ Sbjct: 296 CM-----IEDIERAIFRLHKDITSNELKEVLKKIQLGTEIKKENLS-------------- 336 Query: 412 GSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEG-------- 463 ++ +GI +L++ + +K+ T + E Sbjct: 337 ----------------YIALNNGIFNLDSLELEPHSKDKITTVYMDIDYKEDIDYITGYP 380 Query: 464 EPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKA-QRFIHIRGVGGSGKSTLMNLIK 522 S ++ E+ +G AL N Q+ + I+G +GKS + ++ Sbjct: 381 ADSPIKSYILDLVQNDFELFTVICEFLGQALYRKNNIIQKCLIIKGDKSNGKSKFLQILT 440 Query: 523 YAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMT 582 F + V + L ++G + I + + + IK++ Sbjct: 441 RFFSAENVSTLDLKRFEN---------RFDLFGIVGKMVNIGDDISGQYIGENSNIKKVI 491 Query: 583 GGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--- 639 + + + + T N + A RR ++PF+ + Sbjct: 492 TSEMLPIEQKGKDLF-NYKPYVTCIFSCNNMPRFDDSTKAIKRRLCILPFENTYSEENGN 550 Query: 640 -DASFAQKLETKYTLE-AKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWI 697 + +++ TK + W + G++ + + E +A EE + D + +I Sbjct: 551 INPHIVEQMTTKENMSNLFNWSIWGLRRVLKN-YVITKSEKITEAVEEFDRENDPIKTFI 609 Query: 698 DD---CCDIGENLW---EESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGI 751 D+ ++ + +++ ++ Y + K ++ LKQ I Sbjct: 610 DETAGDTELDLKGYFNMKDTKAVYTDYQIWCNNNG---YKELNNINFGKQLKQH-IPNLI 665 Query: 752 KREKIEKEWKSKRII 766 K + R I Sbjct: 666 KERYRNNFKRPYRYI 680 >gi|310828490|ref|YP_003960847.1| prophage DNA primase [Eubacterium limosum KIST612] gi|308740224|gb|ADO37884.1| prophage DNA primase [Eubacterium limosum KIST612] Length = 602 Score = 171 bits (432), Expect = 5e-40, Method: Composition-based stats. Identities = 55/384 (14%), Positives = 115/384 (29%), Gaps = 28/384 (7%) Query: 374 EDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQD 433 + + + T R + ++ E + + + Sbjct: 147 QSHGERRGLYDTRTETVRRLITALHPGISDVDMRNTENKLRVLVPKVEPCKDKALVPVNN 206 Query: 434 GILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLD-----------LVSGYFESEEV 482 GI D E + + T + FV + + + + EV Sbjct: 207 GIFDYENKILLDFDPKYVFTSKSNVDFVPNARNPVIHNDQDGTDWDVVSWMEELSDDPEV 266 Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGV-GGSGKSTLMNLIKYAFGNQYVINAEASDIMQN 541 + +G +L + + + G +GK T L++ G + D Q+ Sbjct: 267 VKVLWEVLGASLRPNMPWNKSVWLYSTQGNNGKGTFCALVRNLLGKGSWASIPLKDFGQD 326 Query: 542 RPPEAGKANPSLIRLMGSRIVIISETNENDEIN-AAKIKQMTGGDCMTARLNYGNTYSES 600 L L + +I E + I+ AA +K + GD Y Sbjct: 327 ---------FMLEELTRVQAIITDENDVGTYIDKAATLKSVITGDPFLLNRKYKAPM-PC 376 Query: 601 PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFL 660 N+ +++ ++ +RR +VIPF+K + + + ++ L Sbjct: 377 LFRGLMIQCVNEIPKLKDKSESMYRRLLVIPFEKRFEGCERKYIKDDYLGRKD-VLEYVL 435 Query: 661 KGVKAYISKGLD-VDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYS 719 D +PE K+ + R D + + D+ D L Y Sbjct: 436 --FHTLYEMDFDEFSVPEASEKSLDVFRVDNDPLRQFADEVFDKAAWDLLPCKFLYDLYR 493 Query: 720 EYREQELNYDRKRISTRTVTLNLK 743 + + + K +S + +L+ Sbjct: 494 YWFQTNVPQG-KMLSRNSFYSSLE 516 >gi|295103749|emb|CBL01293.1| phage/plasmid primase, P4 family, C-terminal domain [Faecalibacterium prausnitzii SL3/3] Length = 438 Score = 171 bits (432), Expect = 5e-40, Method: Composition-based stats. Identities = 52/439 (11%), Positives = 123/439 (28%), Gaps = 29/439 (6%) Query: 341 VYIW-SLTLDKITASIMNFLVS--MKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVE 397 W + FL +K L S+ + Sbjct: 11 WPDWYNGKKIDEVQFGRAFLEQWPLKCVNGTLYTLDGPVEDESEIKQRILENIEEYVISG 70 Query: 398 ENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTG 457 + K + ++++ SD + Q+G+ L G + L+ Sbjct: 71 LSKKITNILETIK----LLAFSDPFPIEQDCIHLQNGVYHLPDGSFQESR--LFCQNRLP 124 Query: 458 TPFVEGE-PSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKST 516 + +L + + + + +G L+ K Q+ + I G GG GKS Sbjct: 125 VKYDPKAATPDRWLTFLHELLDDAD-IPTLQEYLGYCLIPSTKGQKMMLIVGKGGEGKSR 183 Query: 517 LMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAA 576 + ++K G+ + + L ++I + + N Sbjct: 184 IGLVLKRLMGDAA---------SNGSVQKVENNRFARADLERRLLMIDDDMDMNALPKTN 234 Query: 577 KIKQMTGGD-CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP 635 IK + + + +Y + + + D ++RR +++ Sbjct: 235 YIKTIVTAEAKLDLERKGVQSYQRDIYARLLCFGNGALTSLYDHSDGFFRRQLILTTKDK 294 Query: 636 IANR-DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQ 694 +R D F + W L+G+ + + E + ++ ++ Sbjct: 295 PTDRMDDPFLVEKMCAELEGILLWCLEGLHRLVQNNFRFTVSERAAANVDTIKRSSNNVI 354 Query: 695 AWIDD--CCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQ--KGFIGG 750 +++ + S Y ++ E +S + L+Q + + Sbjct: 355 DFMESEGYFRFKADYSISSKEFYDIYKQWCEDNAC---HSVSAIRFSAELRQNDRRYNLE 411 Query: 751 IKREKIEKEWKSKRIIKGL 769 + R G+ Sbjct: 412 ATNNIYLPGGRRVRGFVGI 430 >gi|71900788|ref|ZP_00682908.1| Poxvirus D5 protein [Xylella fastidiosa Ann-1] gi|71729465|gb|EAO31576.1| Poxvirus D5 protein [Xylella fastidiosa Ann-1] Length = 258 Score = 171 bits (432), Expect = 5e-40, Method: Composition-based stats. Identities = 49/248 (19%), Positives = 94/248 (37%), Gaps = 27/248 (10%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 + + L G R++ ++ET+E + +KQ TGGD + AR + + E + Sbjct: 16 DRHPTEIADLAGRRMMTVNETSEGGILREGFVKQATGGDSLKARHMRSD-FFEFRPTHKL 74 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA------------NRDASFAQKLETKYTLE 654 ++ N ++ D W R ++IPF D +KL Sbjct: 75 QLLTNHKPVIKGQDVGIWSRLMLIPFKARFGTAEEIEAGIAQYPIDHKITEKL-AAEREG 133 Query: 655 AKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHS- 713 W + G + GL+ PE+ A ++ + D +I++ C +G E+ + Sbjct: 134 VLAWVVAGAVEWCKNGLNP--PEIVRNASKDYQTEQDRIAQFIEEECVLGMEHEEKLTAP 191 Query: 714 ----LAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKR---II 766 L +Y+++ + Y +S L++ K K +R +I Sbjct: 192 MGGGLYPAYTQWCKDSGVY---PLSKVRFLGELERCVPDFRKKVTKETVGTGKRRDLVVI 248 Query: 767 KGLKLKPA 774 +G+ L A Sbjct: 249 QGVGLVDA 256 >gi|160943405|ref|ZP_02090639.1| hypothetical protein FAEPRAM212_00896 [Faecalibacterium prausnitzii M21/2] gi|158445265|gb|EDP22268.1| hypothetical protein FAEPRAM212_00896 [Faecalibacterium prausnitzii M21/2] Length = 438 Score = 170 bits (431), Expect = 7e-40, Method: Composition-based stats. Identities = 54/439 (12%), Positives = 125/439 (28%), Gaps = 29/439 (6%) Query: 341 VYIW-SLTLDKITASIMNFLVS--MKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVE 397 W + FL +K L S+ + Sbjct: 11 WPDWYNGKKIDEVQFGRAFLEQWPLKCVNGTLYTLDGPVEDESEIKQRILENIEEYVTSG 70 Query: 398 ENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTG 457 + K + ++++ SD + Q+G+ L G + L+ Sbjct: 71 LSKKVTNILETIK----LLAFSDPFPIEQDCIHFQNGVYHLPDGSFQESR--LFCQNRLP 124 Query: 458 TPFVEGEPSQ-EFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKST 516 + S +L + + + + +G L+ K Q+ + I G GG GKS Sbjct: 125 VRYDPKAASPDRWLTFLHELLDDAD-IPTLQEYLGYCLIPSTKGQKMMLIVGKGGEGKSR 183 Query: 517 LMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAA 576 + ++K G+ + + L ++I + + N Sbjct: 184 IGLVLKRLMGDAA---------SNGSVQKVENNRFARADLERRLLMIDDDMDMNALPKTN 234 Query: 577 KIKQMTGGD-CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP 635 IK + + + +Y + + + D ++RR +++ Sbjct: 235 YIKTIVTAEAKLDLERKGVQSYQRDIYARFLCFGNGALTSLYDHSDGFFRRQLILTTKDK 294 Query: 636 IANR-DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQ 694 A+R D F + W L+G+ + + E + ++ ++ Sbjct: 295 PADRTDDPFLVEKMCAELEGILLWCLEGLHRLVQNNFRFTVSERAAANVDTIKRSSNNVI 354 Query: 695 AWIDD--CCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQ--KGFIGG 750 +++ + S + Y + E +S + L+Q + + Sbjct: 355 DFMESEGYFRFKADYSISSKDFYEIYKLWCEDNAC---HSVSAIRFSAELRQNDRRYNLE 411 Query: 751 IKREKIEKEWKSKRIIKGL 769 + R G+ Sbjct: 412 ATNNIYLPGGRRVRGFVGI 430 >gi|15897095|ref|NP_341700.1| primase (carboxy-end fragment) [Sulfolobus solfataricus P2] gi|13813270|gb|AAK40490.1| Primase (Carboxy-end fragment) [Sulfolobus solfataricus P2] Length = 532 Score = 170 bits (430), Expect = 8e-40, Method: Composition-based stats. Identities = 71/486 (14%), Positives = 140/486 (28%), Gaps = 71/486 (14%) Query: 343 IWSLTLDKITASIMN-FLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSK 401 I + + I F +++ L E D + + V + Sbjct: 17 IIGIFIWNKEKGIFEPFENRLRKKARALLEYYTDLANDE-----------LKPYVISKTI 65 Query: 402 AKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKV---------KPTKELYI 452 + ++ ++ L + + + L+ + + T E + Sbjct: 66 IDNVVDEIKDKTLIP-----LPNEPLRVAFPNCTLEWKISHGRYVPSFVLAEERTPEHFA 120 Query: 453 TKSTGTPFV--------------EGEPSQEFLDLVSGYFES---------EEVMDYFTRC 489 P DL E Sbjct: 121 FHYIPHKIHLEELVKINEEVLSARDIPIDLIEDLARRLCPKSLEVFKQWANEKWVTLFEI 180 Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549 +G L + ++ I G G+GKST +NLIK G V+N + ++ Sbjct: 181 IGYTLFPKIEFRKAFMILGPRGTGKSTFINLIKKLLGRGNVVNIPLHILFGDKN------ 234 Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609 L L + +SET E + + +K +TGGD +TA + + + I Sbjct: 235 RFVLAELYHKLVNAVSETKEYNLDDMDTLKVLTGGDRITADVKFKDP-ITFTPYAKLVIA 293 Query: 610 PNKHLFVRN-PDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYIS 668 NK +R+ D A+W R+++I F + A + + + Sbjct: 294 SNKPPTIRDKNDMAFWHRWLIIEFPNQFEDNTAWGDKTFTEDELEGILTVSILAFSRVLL 353 Query: 669 KGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE-------NLWEESHSLAKSYSEY 721 G D + + + D ++ + GE + + L + Y EY Sbjct: 354 HG-KFDFEQTEEEVRGIWLSTIDYVYKFVKEKLKHGEIMITKNADDYVRVKELYRMYLEY 412 Query: 722 REQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDN 781 + + L+ + E K R + G+K+ + Sbjct: 413 CSTNG---YNATTYKGFVRRLRD---YFNLTVVMKNVEGKRFRAVVGIKINTVQTNETTG 466 Query: 782 SNIIDF 787 + +F Sbjct: 467 GDYGEF 472 >gi|168032336|ref|XP_001768675.1| predicted protein [Physcomitrella patens subsp. patens] gi|162680174|gb|EDQ66613.1| predicted protein [Physcomitrella patens subsp. patens] Length = 419 Score = 170 bits (430), Expect = 8e-40, Method: Composition-based stats. Identities = 60/373 (16%), Positives = 122/373 (32%), Gaps = 59/373 (15%) Query: 369 LSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRF 428 + ++ + ++ + K + +LLDS Sbjct: 68 IYDDKFITDVCESYMETIEPATKIIDFIQSSDNRKKMMYTCAGMLYKEGFEELLDSKRDV 127 Query: 429 LGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPS----QEFLDLVSGYFESEEVMD 484 +G + G+ D + + YIT ST FV + + E LDL++ F +E++ Sbjct: 128 IGMKSGVYDFTEDRFRMMELDDYITLSTRISFVPLDYNSEATNEVLDLLAKVFSNEDIRR 187 Query: 485 YFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544 YF R + L G N + F G G + K+ +++LI+ FG+ + + + + Sbjct: 188 YFMRFISSCLEGRNTNKIFSIWSGSGDNRKTIMVSLIEQVFGDYAIKMPTSLLMEKR--- 244 Query: 545 EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604 ++TG D + R Y P + Sbjct: 245 -----------------------------------EITGNDSLYVRGLYKEGTI-IPQTA 268 Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN-------------RDASFAQKLETKY 651 ++ N+ + D A W R ++PF + +D +F+ K+ + Sbjct: 269 KFILIANRIPQMSMFDKAVWSRIRIMPFVSTFVDKIELSHDLLTTHLKDINFSNKIYF-F 327 Query: 652 TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEES 711 K ++ K Y++ GL + P E + + ++ + Sbjct: 328 APVFMKLVIEEYKQYLTYGL--EEPNEVKDCTEIICVSNNIFGQFLSANVEKNNKNIVAI 385 Query: 712 HSLAKSYSEYREQ 724 L Y + + Sbjct: 386 KELYDLYKYWSKD 398 >gi|284175976|ref|ZP_06389945.1| primase (carboxy-end fragment) [Sulfolobus solfataricus 98/2] Length = 523 Score = 170 bits (430), Expect = 1e-39, Method: Composition-based stats. Identities = 71/486 (14%), Positives = 140/486 (28%), Gaps = 71/486 (14%) Query: 343 IWSLTLDKITASIMN-FLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSK 401 I + + I F +++ L E D + + V + Sbjct: 8 IIGIFIWNKEKGIFEPFENRLRKKARALLEYYTDLANDE-----------LKPYVISKTI 56 Query: 402 AKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKV---------KPTKELYI 452 + ++ ++ L + + + L+ + + T E + Sbjct: 57 IDNVVDEIKDKTLIP-----LPNEPLRVAFPNCTLEWKISHGRYVPSFVLAEERTPEHFA 111 Query: 453 TKSTGTPFV--------------EGEPSQEFLDLVSGYFES---------EEVMDYFTRC 489 P DL E Sbjct: 112 FHYIPHKIHLEELVKINEEVLSARDIPIDLIEDLARRLCPKSLEVFKQWANEKWVTLFEI 171 Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549 +G L + ++ I G G+GKST +NLIK G V+N + ++ Sbjct: 172 IGYTLFPKIEFRKAFMILGPRGTGKSTFINLIKKLLGRGNVVNIPLHILFGDKN------ 225 Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609 L L + +SET E + + +K +TGGD +TA + + + I Sbjct: 226 RFVLAELYHKLVNAVSETKEYNLDDMDTLKVLTGGDRITADVKFKDP-ITFTPYAKLVIA 284 Query: 610 PNKHLFVRN-PDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYIS 668 NK +R+ D A+W R+++I F + A + + + Sbjct: 285 SNKPPTIRDKNDMAFWHRWLIIEFPNQFEDNTAWGDKTFTEDELEGILTVSILAFSRVLL 344 Query: 669 KGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE-------NLWEESHSLAKSYSEY 721 G D + + + D ++ + GE + + L + Y EY Sbjct: 345 HG-KFDFEQTEEEVRGIWLSTIDYVYKFVKEKLKHGEIMITKNADDYVRVKELYRMYLEY 403 Query: 722 REQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDN 781 + + L+ + E K R + G+K+ + Sbjct: 404 CSTNG---YNATTYKGFVRRLRD---YFNLTVVMKNVEGKRFRAVVGIKINTVQTNETTG 457 Query: 782 SNIIDF 787 + +F Sbjct: 458 GDYGEF 463 >gi|160939409|ref|ZP_02086759.1| hypothetical protein CLOBOL_04302 [Clostridium bolteae ATCC BAA-613] gi|158437619|gb|EDP15381.1| hypothetical protein CLOBOL_04302 [Clostridium bolteae ATCC BAA-613] Length = 459 Score = 170 bits (429), Expect = 1e-39, Method: Composition-based stats. Identities = 53/360 (14%), Positives = 113/360 (31%), Gaps = 24/360 (6%) Query: 420 DLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ-EFLDLVSGYFE 478 + + +G L L+ G K + + + P +L + G Sbjct: 88 EDFPPEPDRIHLSNGTLFLD-GTFAKGKPK-IVRNRFPVSYKPNAPKPVLWLQFLDGLL- 144 Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538 E + +G L+ NK QR + I+G GG GKS + ++ FG ++ Sbjct: 145 YPEDIPTLQEYIGYCLIPSNKGQRMMVIKGSGGEGKSQIGAVLGTLFG---------FNM 195 Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM-TGGDCMTARLNYGNTY 597 + + + L + + + +K + T M +Y Sbjct: 196 KDGSIGKISENRFARADLEHILLCVDDDMRMEALRQTNYVKSIVTAQGKMDLERKGKQSY 255 Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEA 655 + + + D ++RR +V+ + A R D A+K+ Sbjct: 256 QGWMCARLLAFSNGDLQALFDRSDGFYRRQLVLTTKEKPAGRVDDPDLAEKM-KAEVEGI 314 Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD--CCDIGENLWEESHS 713 W +G++ + + +E ++ + ++D +L S Sbjct: 315 LLWAFEGLQRLAANNFKFTESQRTKDNREAVKRDNNNVYDFLDSDGYVRRKADLSASSKE 374 Query: 714 LAKSYSEYREQELNYDRKRISTRTVTLNLK--QKGFIGGIKREKIEKEWKSKRIIKGLKL 771 L ++Y Y + K R+ + L Q + + R G+++ Sbjct: 375 LYEAYQIYCTENNLPALKP---RSFSEALIACQSRYNLEYCNNVTNAAGRRVRGFLGIEV 431 >gi|229824159|ref|ZP_04450228.1| hypothetical protein GCWU000282_01463 [Catonella morbi ATCC 51271] gi|229786513|gb|EEP22627.1| hypothetical protein GCWU000282_01463 [Catonella morbi ATCC 51271] Length = 703 Score = 170 bits (429), Expect = 1e-39, Method: Composition-based stats. Identities = 52/322 (16%), Positives = 108/322 (33%), Gaps = 20/322 (6%) Query: 436 LDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFES-EEVMDYFTRCVGMAL 494 +E G+ + E + + Q D ++ + +++ +G + Sbjct: 386 YRIEGGKVKEGAVEDFTPYLLDVAYDPKAYDQTVDDFLNFLVKDRQDLRLIIEELLGHII 445 Query: 495 LGGNKAQRFIHIRGV-GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL 553 + + + G GG+GKST + ++ G + N E K + S+ Sbjct: 446 MLQGFPHKVFFLVGEKGGNGKSTFLEMLNNFVGE----------LGSNINLENFKDHTSV 495 Query: 554 IRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKH 613 L G + I + + + + K + G+ + R Y + T N Sbjct: 496 ASLEGKLVNIGDDIDASYMEKSQIFKTLASGNKVALRPIYKEPF-TLKNRATLIFTANDM 554 Query: 614 LFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETK-YTLEAKKWFLKGVKAYISKGLD 672 ++ RR +++P D + D +KL + L+G++ G Sbjct: 555 PVFKDKTGGIERRLVILPCDNVVKTADFEIDKKLSSDQAKSYILNLALQGLERIRRNGGK 614 Query: 673 VDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKR 732 + E E + +DT ++I++ G + + + Y +Y + K Sbjct: 615 LSESETLKHELESYMEDSDTVLSYINN---KGIDPNMDRKMVYSDYVQYCAEIGQTPHKA 671 Query: 733 ISTRTVTLNLKQKGFIGGIKRE 754 I LK KG+ R Sbjct: 672 I---AFGKRLKAKGYETRETRR 690 >gi|62464803|ref|YP_220367.1| replication initiation protein [Sulfolobus neozealandicus] gi|56562187|emb|CAH89324.1| replication initiation protein [Sulfolobus neozealandicus] Length = 866 Score = 169 bits (428), Expect = 1e-39, Method: Composition-based stats. Identities = 102/713 (14%), Positives = 231/713 (32%), Gaps = 107/713 (15%) Query: 8 EQAKQAIHNGFKLIPLRLGDKRPQ--RLGKWEEQLLSSEKIDKLP---ACGFGFVCGVGE 62 A+ + +G +IP++ DK+P +++E+ + E+I++ G VCG Sbjct: 3 SYAQLYLKHGLSVIPIKYKDKKPALESWKEYQERQSTEEEIERWFSSGKYNVGIVCGKAS 62 Query: 63 QPLYAFDIDSKDEKTANTFKDTFEILH-GTPIVR-------IGQKPKILIPFRMNKEGIK 114 L D D K F +E + P +R + + + K+ + Sbjct: 63 NNLVVLDFDEKRG-----FDKWYEYIDANYPHIRDMILSTWLEDTHNGVHVYLRVKDAVI 117 Query: 115 KKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLF 174 + LDI G G Y VA EY++ P ++++ + + Sbjct: 118 RSSKVGDK---LDIKGDGGYVVATPSLHPEGTEYSFRLGPS--DGAKIIEITKKQFDEIL 172 Query: 175 KFFQEITVPLVKDKKSIIPSKTWTNN-NNRQYTNREITAFLSCFGEEFYNGSHDE----- 228 K +E+ + +D K + + +Y E + + +E Y + Sbjct: 173 KTLREVGLIKSEDTKEERKERANAARVSGFRYLKEEDLSKVIGLAKEGYKEGYRNQLCMF 232 Query: 229 ---WIPVVM-----------AVHHETRG----SSKGKEIARRWSKQGSTYD------EEN 264 W+ V A+H + + +++ K I ++K G E+ Sbjct: 233 LSGWLAVAGIHPLQAVKIIKALHDDGKDEEPLANRCKPIVYSYAKAGYDLTQFREEMEKE 292 Query: 265 FNYK---WDTFDF---EEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSI 318 W+ + + + + L + + + Sbjct: 293 CGGNLSGWNATGAISGVRGVQQILNATVGKDKALIIIRQLQEALGTASPYEDAVFEILDY 352 Query: 319 YKKGHFLYTADTKAWYK-KDKNNVYIWS-----------LTLDKITASIMNFLVSMKEDV 366 + + + + K + + Y + I + V Sbjct: 353 SRDLYVVANPEEKVVVRAYSTDKEYKEKEVVIEAYPTAVEVYENPVGGITKYRTVWASKV 412 Query: 367 FDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSS 426 E + + + +++ N+ + ++ G ++ + +S Sbjct: 413 RQKPIEVGPATADEIADYLRAEGVVKHKDLVYNTVSALLMGYIKYG--KAVIKNEFESPG 470 Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDY- 485 +L +G ++ + KP++E + ++ + + F V+ + Sbjct: 471 FYLN--NGKIEPSRVEIRKPSREELREALELLD----DLAERWFSHIKDKF--AMVVKWG 522 Query: 486 FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545 G +++++ G+ SGK+TL +I +G NR P+ Sbjct: 523 IISPFGYVYKQKGSWIKWLYLFGISKSGKTTLAEMIMKIWG-------------INRAPK 569 Query: 546 AGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCM-------TARLNYGNT-Y 597 +G ++ RL G+ ++ + + +E + D + TAR Y + Y Sbjct: 570 SGANIDNVARL-GAVLMQGTYPDVINEPGDVLKENSPLIDPIKNAIEQKTARGAYRHGNY 628 Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETK 650 E P+ N V D + RR+I++ FD+ +++ + K Sbjct: 629 VELPSLAMLVFTSN---RVYPKDSSLIRRFIIMNFDEQLSDDKIAEFDKNVRP 678 >gi|329729096|gb|EGG65507.1| nucleoside triphosphatase, D5 family [Staphylococcus epidermidis VCU144] Length = 499 Score = 169 bits (428), Expect = 1e-39, Method: Composition-based stats. Identities = 58/400 (14%), Positives = 133/400 (33%), Gaps = 26/400 (6%) Query: 351 ITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLE 410 I MNFL+ +E+ L+ E+ ++ + ++KA + Sbjct: 65 ILIENMNFLLFDEEENTKLAMYQEERGVYTQKTSLIKRIISYLEPKHNSNKADDVIYHIR 124 Query: 411 AGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFL 470 + ++ S + +G+ + +T Q + T T +++ F Sbjct: 125 NRTEIKEKTN----SPYLIPVNNGVFNRKTKQLENFSPNYVFTSKIDTNYIDNPNKPTFD 180 Query: 471 DL-VSGYFE-----SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524 D ++ +F+ ++V + + +L G ++ I + G G +GK T L+ Sbjct: 181 DWDINKWFDELACNDKQVSHLLWQVINDSLNGNYTRKQSIFMVGDGNNGKGTFQELLTNL 240 Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAA-KIKQMTG 583 G + + + ++ + L G VI + I+ K + Sbjct: 241 IGKKNIATLKVNEFD---------HRFKMSLLEGKTAVIGDDVPVGVYIDDGSNFKSVVT 291 Query: 584 GDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASF 643 GD ++ +Y + + N ++ +A ++R +++PF+ Sbjct: 292 GDYVSVEFKNQQSY-TAQFRCSVIQSSNGMPRFKDKTNAVFKRLVIVPFNADFKGDKEKR 350 Query: 644 AQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDI 703 K E + ++ L A IP+V K + +Q + + + D Sbjct: 351 KIKDEYIKNKQVLEYIL--YHAIRMDFEKFSIPDVSKKYLDVYKQENNPVYEFKINVFDE 408 Query: 704 GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLK 743 + + + Y E+ + +S K Sbjct: 409 WKLRKIPKYIVYGLYKEFCKDNG---YNFLSKIKFHKEFK 445 >gi|262200579|ref|YP_003271787.1| P4 family phage/plasmid primase [Gordonia bronchialis DSM 43247] gi|262083926|gb|ACY19894.1| phage/plasmid primase, P4 family [Gordonia bronchialis DSM 43247] Length = 739 Score = 168 bits (426), Expect = 2e-39, Method: Composition-based stats. Identities = 47/335 (14%), Positives = 112/335 (33%), Gaps = 28/335 (8%) Query: 425 SSRFLGEQDGILDLETGQK--VKPTKELYITKSTGTPFVEGEPSQEFLD----------L 472 + ++G++D G + + + + F Sbjct: 250 DRDLIACRNGVVDYNGGSPVFHEFDPKYVFLAKLDVDWNPDAQNPVFDTPDGDQWDVESW 309 Query: 473 VSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRG-VGGSGKSTLMNLIKYAFGNQYVI 531 ++ + EV+D + +G N + + G +GK TL++L++ G Sbjct: 310 MASLSDDPEVVDLLWKGIGAIARPYNSWNKAMFFYSRKGNNGKGTLLSLMRNMLGVGNYA 369 Query: 532 NAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEIN-AAKIKQMTGGDCMTAR 590 + +D ++ L L + +++ E + + AA K + D +T Sbjct: 370 SIPLADFGKD---------FLLEPLTRANAILVDENDVGTFVEKAANFKAVITNDVITIN 420 Query: 591 LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETK 650 Y + F N ++ ++ +RR I +PF+K + + + + Sbjct: 421 RKYKAPIAHQHFGF-MVQCLNDEPVFKDKSESIYRRQIFVPFEKCFTGAERKYIKDDYLR 479 Query: 651 YTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEE 710 E ++ L+ + ++ P A + R+ D +A+ ++ + + Sbjct: 480 -RPEVLEYVLR--RVLTMDYYELPEPAAVQAALNQFRESNDPVRAFWNENQMLFQWDLLP 536 Query: 711 SHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK 745 L + Y + + + + K I L Q Sbjct: 537 FPFLHEFYVAWMGRYM-PNSKPIGKNKFISELVQL 570 >gi|330507945|ref|YP_004384373.1| phage/plasmid primase, P4 family [Methanosaeta concilii GP-6] gi|328928753|gb|AEB68555.1| phage/plasmid primase, P4 family [Methanosaeta concilii GP-6] Length = 378 Score = 168 bits (426), Expect = 2e-39, Method: Composition-based stats. Identities = 49/314 (15%), Positives = 100/314 (31%), Gaps = 15/314 (4%) Query: 421 LLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESE 480 DS + ++G+ + +TG+ + T + Y F +++ E Sbjct: 12 KFDSDLSIINMENGLYNWQTGKFLPHTPDYYSVIQIPVRFDPDARCPNIDKMIN-IVADE 70 Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540 + L Q+ + G GG+GKS +++++ G+ N D+ + Sbjct: 71 KDRMKCYEMFAYCLYRSYPIQKMFVLFGPGGTGKSYFLDVVQRMLGDVNCSNVSMQDLAK 130 Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGG-DCMTARLNYGNTYSE 599 +R + L I + + A +KQ+T D + A+ + Sbjct: 131 DRFASSD--------LYKKLANICGDLDNTAMYQVATLKQLTSNKDRIRAQRKGEKAF-N 181 Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLE-TKYTLEAK 656 P N ++ ++RRY +IPF D F L Sbjct: 182 FVNFAKPIFSANHLPSSKDDTSGFYRRYEIIPFMHVFGADEIDQDFLDSLTSDAEISGLF 241 Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAK 716 + + + + + AK + + +++ D + LA Sbjct: 242 NKVVSILCDLLVRNAFTNQ-LNIEDAKSMYKDRSAPEESFFDQFVVEVPGETIAKNMLAM 300 Query: 717 SYSEYREQELNYDR 730 ++EY E R Sbjct: 301 YFNEYCEILGLPKR 314 >gi|269975282|gb|ACZ55506.1| primase [Staphylococcus phage SA1] Length = 554 Score = 168 bits (425), Expect = 3e-39, Method: Composition-based stats. Identities = 66/324 (20%), Positives = 108/324 (33%), Gaps = 23/324 (7%) Query: 6 WKEQAKQAIHNGFKLIPL------RLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCG 59 W+E + NG+ ++P+ + G + WE + E+I + G Sbjct: 4 WQEYGETLWGNGYTVVPIYAPDADKKGAGKRPIGKDWERTINDKEQIQRWAERYTKNGIG 63 Query: 60 VGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTT 119 + + A DID DE D G RIG++PK L FR K K Sbjct: 64 ILTKYTPAVDIDVYDEDAVAHMADWVLENVGRAPCRIGREPKKLFLFRTESPFSKVKSGV 123 Query: 120 EST----QGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVE---DTPLLSEEDVEY 172 + ++IL GQ FVAY IHP T ++Y W + D +S + Sbjct: 124 WEDDFGQRHAVEILADGQQFVAYGIHPDTNRDYYWLDDENPLNNAADFDLEEISLDTARE 183 Query: 173 LFKFFQEITVPL----------VKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFY 222 + F + + W + + + Sbjct: 184 IAAEFDRYAKEQGWTMVKRPMNGYEAIGTADEEDWAATAGIRKWDGTYEDLRDLVMKYPN 243 Query: 223 NGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAK 282 ++ +I V+ A+ R + K IAR W+ Q +D+ +F YKWD Sbjct: 244 PEDYENYIKVLAALQISCRDQDEAKSIAREWAMQAHNFDDGDFEYKWDKGFAHNASRLVT 303 Query: 283 KRSTFTSLFYHHGKLIPKGLLASR 306 S T + + + R Sbjct: 304 LGSIITEVREIEKAEQEEKAVEYR 327 >gi|293369974|ref|ZP_06616541.1| phage/plasmid primase, P4 family, C-terminal domain protein [Bacteroides ovatus SD CMC 3f] gi|292634892|gb|EFF53414.1| phage/plasmid primase, P4 family, C-terminal domain protein [Bacteroides ovatus SD CMC 3f] Length = 554 Score = 168 bits (425), Expect = 3e-39, Method: Composition-based stats. Identities = 68/521 (13%), Positives = 163/521 (31%), Gaps = 53/521 (10%) Query: 282 KKRSTFTSLFYHHGKLIPKGLLASRFS------DAYNKAMFSIYKKGHFLYTADTKAWYK 335 + + K A D + +I + K+ Sbjct: 64 DNPDMLDFIAKLREDVENKSENAKDAKKTLKELDPSTEVKAAIIIENLLKVCEKKKSGIG 123 Query: 336 KDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQN 395 N+Y ++ ++ + +K + ++E+ + + RF + Sbjct: 124 VINGNIYYYNSYYWELLEENL-----VKNYLSMVAEQSGLPHFQASKVRFIDLLYKQLLA 178 Query: 396 VEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETG--QKVKPTKELYIT 453 + S+ ++ + ++G G + E +T Sbjct: 179 TAALPMSASSTNEVK------------------INLKNGTFKCYDGKFDFCDFSPEDRLT 220 Query: 454 KSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSG 513 F + +F+ + +E + + ++ + + G GG+G Sbjct: 221 YQLPFEFNRNAKADKFMLFLEEVIPEKEARMLVAEYIAYIFAKHLRWEKCLVLLGSGGNG 280 Query: 514 KSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI 573 KS L++++ G Q V + S + + + +G+ ++ + Sbjct: 281 KSVLIDIVTALLGEQNVCHFSLSRLCEANGYYRAE--------IGNYLLNACSEMGSKNT 332 Query: 574 NAAKIKQMTGGDCMTARLNYGNTYSESPASFTPF---IVPNKHLFVRNPDDAWWRRYIVI 630 + +KQ+ D ++AR YG + S F + NK + ++RRY+ + Sbjct: 333 DPEMVKQLFSNDPVSARSPYGKPVTVSNYCRFLFSANFISNKDME---QTIGYFRRYLFL 389 Query: 631 PFDKPIAN--RDASFAQKLETKYTLEAKKWFLKGVKAYIS-KGLDVDIPEVCLKAKEEER 687 F+ I ++ + A+++ + W L+G+K + + + Sbjct: 390 EFNATIPEWKKNPNLAREIIEEELSGVFNWVLEGLKRILEPNRKGFTYSKHIDNTNKRIE 449 Query: 688 QGTDTYQAWI-DDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746 + +++ ++ D+ EE+ +L Y + E S L+ + Sbjct: 450 RNSNSVALFMCDENLQPSSEKHEEAKTLYDRYKNFCEDNH---YGVASKHEFLRRLETQL 506 Query: 747 FIGGIKREKIEKEW-KSKRIIKGLKLKPAFESVDDNSNIID 786 +R W + + K K K F II+ Sbjct: 507 KYCVKRRTTNNATWVYCETVKKTEKDKNEFVEKFKAEGIIN 547 >gi|291539832|emb|CBL12943.1| phage/plasmid primase, P4 family, C-terminal domain [Roseburia intestinalis XB6B4] Length = 516 Score = 168 bits (425), Expect = 3e-39, Method: Composition-based stats. Identities = 60/448 (13%), Positives = 147/448 (32%), Gaps = 44/448 (9%) Query: 335 KKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQ 394 KK + +YIW+ + ++E L +E + K ++ + Sbjct: 100 KKIEEKLYIWNGKYYRQLNEE----SFVREARSVLPKEMQ------KRIPYYNRFQDTYK 149 Query: 395 NVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITK 454 ++ N + + ++ + Q+GI + E + T + + Sbjct: 150 YMQANGSLTGEFKKKDVA-----------TAKHMIVFQNGIYNAEKDALINSTSKYPVLF 198 Query: 455 STGTPFVEGEPS--QEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGG 511 ++ E ++ + ++ F +C+G G +A++F Sbjct: 199 EINAEYLGNEEVQTPYMDKIIMQATGGDVDTLERFYQCLGYIYSQGTEAKKFFVFGTAPD 258 Query: 512 SGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN- 570 SGKS + I G + ++ + L + + + Sbjct: 259 SGKSIIGEFIAKTIGEGNISTISLNEF---------GSRFKLGSISQRILNYNMDLPAGM 309 Query: 571 -DEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIV 629 D+ + +K +TG + Y N + ++ D+A++ R ++ Sbjct: 310 LDKKSVQLLKLLTGDAKIDCEEKYVQ-NRTVTHHCKFLFATNHPIQLKEDDEAFYHRMLL 368 Query: 630 IPFDKPIANRDASFAQ-KLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQ 688 IPF K IA+ + ++ + K + E+ + E R+ Sbjct: 369 IPFVKSIADENRDYSMPEKLWKERHAIATRAAHAYRDLYRNNFVFHESELADRMLNEWRE 428 Query: 689 --GTDTYQAWIDDCCDI---GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLK 743 + + CC++ E+ + + +L K+Y ++ ++ + R S + L Sbjct: 429 NCRQKCLKEFFYQCCEVVKEREDAFVPTDALFKAYRKFCAEKDIHIRD--SDKPQFSRLF 486 Query: 744 QKGFIGGIKREKIEKEWKSKRIIKGLKL 771 + F + +++ G++L Sbjct: 487 KNTFGIASTKRRVDGYNSPVNGYLGIQL 514 >gi|301321603|gb|ADK68993.1| Predicted ATPase [Gordonia sp. KTR9] Length = 740 Score = 168 bits (425), Expect = 3e-39, Method: Composition-based stats. Identities = 49/336 (14%), Positives = 112/336 (33%), Gaps = 33/336 (9%) Query: 424 SSSRFLGEQDGILDLETG--QKVKPTKELYITKSTGTPFVEGE-----------PSQEFL 470 + + +GI+D G Q + + E + + Sbjct: 262 DNRDLIAVNNGIIDYNDGDPQFIDFSPEFIFLAKLDVAWNPDARNVVIHNDTDGTDWDVE 321 Query: 471 DLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGV-GGSGKSTLMNLIKYAFGNQY 529 + + EV++ +G + R G +GK TL++L++ G Q Sbjct: 322 SWMESLSDDPEVVELLWEIIGATVRPYVSWNRCAFFYSEQGNNGKGTLLSLMRNLIGVQS 381 Query: 530 VINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEIN-AAKIKQMTGGDCMT 588 + +D ++ L L + +++ E + I AA K + D +T Sbjct: 382 YASVPLADFGKD---------FLLEPLTRASAILVDENDVGTFIEKAANFKAIVTNDVIT 432 Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLE 648 Y + + F N +++ ++++RR + +PF K + + + Sbjct: 433 INRKYKSPIAHQHFGF-MVQCLNDKPTIKDKSESFYRRQLFVPFTKCFTGAERRYIKDDY 491 Query: 649 TKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLW 708 + ++ LK + + P+ A E+ ++ D +A+ ++ GE W Sbjct: 492 LT-RADVLEYVLK--RVLTMSYYSLSEPQAVKDALEDFKESNDPIRAFWNE--VKGEFRW 546 Query: 709 --EESHSLAKSYSEYREQELNYDRKRISTRTVTLNL 742 Y + + + + K + +L Sbjct: 547 DLVPFPFAYDLYKAWMARNM-PNSKPLGRNKFIDSL 581 >gi|282890934|ref|ZP_06299448.1| hypothetical protein pah_c032o008 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499149|gb|EFB41454.1| hypothetical protein pah_c032o008 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 248 Score = 168 bits (425), Expect = 3e-39, Method: Composition-based stats. Identities = 49/245 (20%), Positives = 93/245 (37%), Gaps = 20/245 (8%) Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK------IKQMTGGDCMTAR 590 + P L G + I++E E EI +K + G+ TA Sbjct: 4 LTSRQFSPCQFDNRFQRAHLFGKLVNIVTEIAEGAEIAEGAEIADAALKAIVSGERTTAE 63 Query: 591 LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLE 648 + N + + T + N R+ DA +RR I++ F++ RD QKL+ Sbjct: 64 HKHKNPF-DFHPYSTCWFGANHMPHCRDFSDAIFRRAIILSFNQKFEGPGRDVHLRQKLQ 122 Query: 649 TKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLW 708 L+G+ +G + AK R D + ++ D C+I +L Sbjct: 123 M-EISGILNLALEGIAGVFERG-EFTYCPSSEAAKRNWRFECDQVEQFVTDACEIASSLR 180 Query: 709 EESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKG 768 S + KSY+++ ++ ++ + +T L++ G + KR++ G Sbjct: 181 SSSLDIFKSYTDWAKEMG--VKRILGHNGLTQRLQKLGVE-------TSRGTNGKRMLSG 231 Query: 769 LKLKP 773 + +K Sbjct: 232 ISIKS 236 >gi|313885599|ref|ZP_07819349.1| phage/plasmid primase, P4 family, C-terminal domain protein [Eremococcus coleocola ACS-139-V-Col8] gi|312619329|gb|EFR30768.1| phage/plasmid primase, P4 family, C-terminal domain protein [Eremococcus coleocola ACS-139-V-Col8] Length = 701 Score = 168 bits (425), Expect = 4e-39, Method: Composition-based stats. Identities = 81/526 (15%), Positives = 172/526 (32%), Gaps = 48/526 (9%) Query: 266 NYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRF--SDAYNKAMFSIYKKGH 323 + K+++ ++ + Y + + L A + + + + Sbjct: 197 HKKFESVTPLNKRQASQIIRAYIDREYENLQEYGNALSAISVIGKAVLTGEIQEEWAREY 256 Query: 324 F-LYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKE----------DVFDLSEE 372 L D K W ++++ + + K I + + +VF+ S+E Sbjct: 257 VELLALDNKEWAEENQQKLNEFLG---KQVDDIYSNYTFKDKFSAPSSSDKFNVFEFSQE 313 Query: 373 -PEDNNKNSKSPRFW-FNTDYRRQNVEENSKAKSTAQSL------EAGSIFSITSDLLDS 424 D + + R N +A + +Q L E + S+ + Sbjct: 314 FARDYQVYYYRDKLYVKQDIVWRSNENSILRAINESQQLTRASDNEVIHQLTKISEEFEG 373 Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSG-YFESEEVM 483 + +G ++ G+ VK + + + S++ D ++ + E+ Sbjct: 374 DIDSIQLANG-FQVKGGKIVKGAVDNFTPYLLDVDYNPNAYSKDVDDFLNFLVMDRPELR 432 Query: 484 DYFTRCVGMALLGGNKAQRFIHIRG-VGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542 +G +L G G +GKST + ++ G+ + N Sbjct: 433 VTVEELLGHIILLKGFPHSVFFFVGRSGANGKSTFLEMLNEWVGD----------MGSNI 482 Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602 +A S+ L + I + + + +A K + G+ + R Y T Sbjct: 483 SLDAFSDPTSIGELEDKIVNIGDDIDASYLDKSANFKALASGNTIMIRPIY-QTPRRLKN 541 Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKY-TLEAKKWFLK 661 + T N+ ++ RR +++P D + D KL TK LK Sbjct: 542 TATLLFTANEMPTFKDKTGGIARRLVIVPCDNVVKKADFDLVSKLTTKEAKSYLLNLALK 601 Query: 662 GVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEY 721 GVK G + V ++ + +D+ ++D+ I NL + + + Y + Sbjct: 602 GVKNIAHNGGKITDNGVVNSMVQDYLEKSDSVAMYVDEE-GITPNL--DKKLVYQDYLNF 658 Query: 722 REQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIK 767 Y K + T L G+ ++ + + K IK Sbjct: 659 CSA---YGMKPQKVTSFTQKLIDLGY---RVKDTYQMNKRVKLYIK 698 >gi|254520503|ref|ZP_05132559.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA] gi|226914252|gb|EEH99453.1| conserved hypothetical protein [Clostridium sp. 7_2_43FAA] Length = 534 Score = 167 bits (423), Expect = 5e-39, Method: Composition-based stats. Identities = 71/509 (13%), Positives = 160/509 (31%), Gaps = 34/509 (6%) Query: 281 AKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNN 340 + Y + + L + + K + ++K +K Sbjct: 42 SDNEEILLKECYLDNEYEEEELFNKETKYEEDIFENLVSKSSNKKREKESKFLINFNKRK 101 Query: 341 VYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNK--NSKSPRFWFNTDYRR-QNVE 397 + + +KI N + + E+++ E + + + F + Sbjct: 102 RVVVTYIANKIINE--NKFICINEEIYLYLENLGYYKRLSDQEIRVFVYKFISLENCKHF 159 Query: 398 ENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTG 457 +S +S ++ + + + + G+ D+ + + + + Sbjct: 160 NSSDIESIIYFIKISDKIQKNMNDIKRHRNLVNTKSGVYDIRSKKILPHDHKYMFFSVVN 219 Query: 458 T-----PFVEGEPSQEFLDLVSGY-FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGG 511 + + + F ++ EE+ G L N+ ++F + G GG Sbjct: 220 AEYNIQNYNDNFYNSRFYKFLNEITLGDEELKQRLKEITGYCLCNANQMRQFYILIGDGG 279 Query: 512 SGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEND 571 +GKS +NL+ G + N + + + + + L + I SE ++ Sbjct: 280 NGKSIFLNLLMTLVGEENTSNIQLNQLSDQK---------YIAELANKMVNIGSELSDIK 330 Query: 572 EINAAKIKQMTG-GDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDD----AWWRR 626 + + IK + D + R Y +S N + N + A++ R Sbjct: 331 LGDTSAIKSLVNDTDKVICRPLYKQPFS-FVNYCKLIFATNNLPELNNKNYKNNTAFFNR 389 Query: 627 Y--IVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKE 684 I P+ +D + +L + W L+G++ ++ E+ + Sbjct: 390 AIIIPFNNIIPVEKQDKNLNNQL-RREIDLVLVWALEGLEKVRKNKWNLSECEISTRYSL 448 Query: 685 EERQGTDTYQAWIDDCCDIGENLWEE--SHSLAKSYSEYREQELNYDRKRISTRTVTLNL 742 E R + ++ + I L + +E D NL Sbjct: 449 EYRDSQSYIERFLKERIRIDIENKNYMFKSDLKDELERFCIEEG-IDSNISDGMKYLHNL 507 Query: 743 KQKGFIGGIKREKIEKEWKSKRIIKGLKL 771 K GIK +KI K+++ G+ L Sbjct: 508 IIK--KYGIKYKKIRIGDKTRQGYIGICL 534 >gi|295105113|emb|CBL02657.1| phage/plasmid primase, P4 family, C-terminal domain [Faecalibacterium prausnitzii SL3/3] Length = 439 Score = 167 bits (423), Expect = 5e-39, Method: Composition-based stats. Identities = 49/357 (13%), Positives = 113/357 (31%), Gaps = 22/357 (6%) Query: 420 DLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ-EFLDLVSGYFE 478 + + + +G L L+ + E + + P +L +S Sbjct: 83 EDFPPVTDRIALANGTLHLD-DTFQEGKPE-IVRNRLPVRYDPKAPQPVHWLRFLSDLL- 139 Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538 E + +G L+ NK QR + I+G GG GKS + ++ FG ++ Sbjct: 140 YPEDIPTVQEFIGYCLIPSNKGQRMMVIKGSGGEGKSQIGVVLSQLFGC---------NM 190 Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM-TGGDCMTARLNYGNTY 597 + + + L + + + + +K + T M +Y Sbjct: 191 KDGSIGKISENRFARADLEHTLLCVDDDMRMEALRQTNYVKSIVTAQGQMDLERKGKQSY 250 Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF-DKPIANRDASFAQKLETKYTLEAK 656 + + + D ++RR +++ DKP++ D + Sbjct: 251 QGWMYARLLAFSNGDLQALYDRSDGFYRRQLILTTKDKPLSRVDDPDIAEKMAAEVEGIL 310 Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD--CCDIGENLWEESHSL 714 W +G++ + G + + +E ++ + +++ + + S L Sbjct: 311 LWAFEGLQRLVKNGFQFTESDRAKRNRELVKRDNNNVFDFLESEGYIRLKADACTSSKEL 370 Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLK--QKGFIGGIKREKIEKEWKSKRIIKGL 769 + Y + E+ I R + L Q + + + R G+ Sbjct: 371 YEVYKMWCEEN---SLNAIKARGFSDALIANQSRYNLESTNNIVNSSGRRVRGFVGI 424 >gi|307591304|ref|YP_003900103.1| phage/plasmid primase, P4 family [Cyanothece sp. PCC 7822] gi|306986158|gb|ADN18037.1| phage/plasmid primase, P4 family [Cyanothece sp. PCC 7822] Length = 999 Score = 167 bits (422), Expect = 8e-39, Method: Composition-based stats. Identities = 72/553 (13%), Positives = 165/553 (29%), Gaps = 96/553 (17%) Query: 269 WDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYT- 327 W+T D R++ + Y + LIP + + + +++ + Sbjct: 428 WNTIRGHLGEDAEAFRASLE-MKYGNSSLIPNDEKDNLGLPVWAASNIAVWLAERYRCVL 486 Query: 328 ---ADTKAWYKKDKNNVYIWSLT----LDKITASIMNFLVSMKEDVFDLSEEPEDNNKNS 380 + WY+ + +WS + +I + + L +++ + + ++ Sbjct: 487 AWNTQIEEWYRYAAQSEGVWSKEPKYYIWQIIITELETLADIRQQLDEKNQ--------- 537 Query: 381 KSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLET 440 + + + +E + D + L +G+ +LET Sbjct: 538 -----------------RPTYSSNFVTGIETLLKAHLAVRGWDETEGLLPFNNGVKNLET 580 Query: 441 GQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNK 499 G+ + +T + + +D + E+++ + + + Sbjct: 581 GEFSPHSPGFRLTWCLPYNYDPLATCEPIVDWLKVMTKGDEQIIQFIRAHLNAVVTSRVD 640 Query: 500 AQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGS 559 Q ++ + G GG+GK T+ L G++ I+ ++ +NR RL + Sbjct: 641 IQSYLELIGPGGTGKGTITRLATALIGDRNTISTTLRNLEENR--------FDTARLYNA 692 Query: 560 RIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNP 619 R+V+I++ + + + +K +TG D + + I N+ + + Sbjct: 693 RLVVITDAEKWGG-DVSVLKALTGQDKLRYEEKFKQPLDGFYFRGRVMICANEPIQSADY 751 Query: 620 DDAWWRRYIVIPFDKPIANRDASFAQKL--------ETKYTLEAKKWFLKGVKAYISKGL 671 RR + I + L Y W L + Sbjct: 752 TSGLERRRQTVYMTNKIPLKSQKTLISLNNKGVTGDFVPYLPGLMNWVLS---------M 802 Query: 672 DVDIPEVCLKAK-------EEERQ----GTDTYQAWIDDCCDIGENLWEESHS------- 713 E +K + + T+ W+D I N Sbjct: 803 SPSDTEQIIKETPTLHHQFQYYKAQILTETNPIADWMDVSVVIRNNYRSPIGVANRDKSS 862 Query: 714 ------------LAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWK 761 L +Y+++ K +S R L + + + Sbjct: 863 DSPNWFLNTDRWLYANYAQFCHATGA---KAVSVRRFVNLLHDLSL-NQLNLNVTKGRDR 918 Query: 762 SKRIIKGLKLKPA 774 + GLKL+ Sbjct: 919 YGAYLLGLKLRDD 931 >gi|255323694|ref|ZP_05364822.1| putative prophage DNA primase [Corynebacterium tuberculostearicum SK141] gi|255299184|gb|EET78473.1| putative prophage DNA primase [Corynebacterium tuberculostearicum SK141] Length = 636 Score = 167 bits (422), Expect = 8e-39, Method: Composition-based stats. Identities = 56/338 (16%), Positives = 114/338 (33%), Gaps = 23/338 (6%) Query: 420 DLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLD-------- 471 +D++ +G+ + +TG+ + + T + Sbjct: 187 RRVDTTQDIAPFANGVYNYDTGEFKPYSPDQTHLFKFATKWNPDAEMPVIEQEDGTVWRP 246 Query: 472 --LVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGV-GGSGKSTLMNLIKYAFGN 527 + F EE+ + +G L N + + G +GK TL+ LI+ G+ Sbjct: 247 DEWLESLFGGDEELALSMWQVIGAHLRPYNSFDQAAILMSPKGSNGKGTLLQLIESLVGS 306 Query: 528 QYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK-IKQMTGGDC 586 + + Q + R++G VI E N +A+ K + D Sbjct: 307 HNTAHIPLDAMEQ---------RFGMHRVIGKCAVIADENNVGAYHTSARNFKALVTADT 357 Query: 587 MTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQK 646 +T + + N +L V + D+ +RR + IPF + + + A + Sbjct: 358 LTIDRKNR-SVVDYRPFVQVTQCFNDNLRVADDSDSLFRRQLFIPFPQTFLDSKRNPAIR 416 Query: 647 LETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGEN 706 + E +W K V I + K E++ + +ID+ D + Sbjct: 417 EDYVKRPEVLEWVAKHVLLEIPSYKRFTESTASKELKIEQKLVNSPIREFIDENYDSFVH 476 Query: 707 LWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQ 744 + L + Y + ++ K S + T L++ Sbjct: 477 DFIPLKCLYQIYKAWYADTVSDRGKAASKKAFTNELRR 514 >gi|319939549|ref|ZP_08013909.1| DNA primase [Streptococcus anginosus 1_2_62CV] gi|319811535|gb|EFW07830.1| DNA primase [Streptococcus anginosus 1_2_62CV] Length = 483 Score = 167 bits (422), Expect = 8e-39, Method: Composition-based stats. Identities = 41/281 (14%), Positives = 94/281 (33%), Gaps = 18/281 (6%) Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEG------EPSQEFLDLVSGY- 476 S + ++GI DL+ + + I T + + + +F + + Sbjct: 122 SDRNLIPVKNGIFDLKRKALLPFSPSYIIKSKINTAYHDKPMKPILDKWFDFDEWLKSIA 181 Query: 477 FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEAS 536 E+++ + + A+ + + G G +GK T +L+ G + + N + + Sbjct: 182 CNDEDIVTLLWQIMNEAINPNYTRGKMAILYGEGNNGKGTFQSLLINLIGAKNISNLKPN 241 Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNT 596 + + L L G I + + + + + GD + + Sbjct: 242 QFEE---------SFQLSALEGKVCNIGDDISNKYLDEVSDLMSVVTGDSVHVNPKHQQP 292 Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAK 656 Y E+ N+ R + W+RR ++PF+ + K + Sbjct: 293 Y-EAVYKCFCLFSGNELPKARAKNQGWYRRLCIVPFNADFNGQKEKPEIKNQYLKDERLL 351 Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWI 697 +W L + K P+ + E + D Y +++ Sbjct: 352 EWVLYRILNL-EKFDKFIEPQAVKELLSEYKINNDFYFSFV 391 >gi|172054865|ref|YP_001806192.1| hypothetical protein cce_4778 [Cyanothece sp. ATCC 51142] gi|171701146|gb|ACB54126.1| hypothetical protein cce_4778 [Cyanothece sp. ATCC 51142] Length = 704 Score = 166 bits (421), Expect = 9e-39, Method: Composition-based stats. Identities = 55/394 (13%), Positives = 117/394 (29%), Gaps = 28/394 (7%) Query: 306 RFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLT----LDKITASIMNFLVS 361 ++++ F K ++ T W+ IW L+K + L Sbjct: 311 KWNEEGLTLYFEELYKDRLIFEDATGEWHLYSAEKEGIWGKISKIQLEKRIILELRELKQ 370 Query: 362 MKEDVF-----DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFS 416 E + + E N + ++ E + + I Sbjct: 371 KFEQINGQIAGAIKSVKESNRSREEKKDIIEQLKAQKPTYREITINFVEKLGKKLSRILL 430 Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY 476 +T ++ + ++G+LD+ET + Y T S + + + Sbjct: 431 VTEMACNAHKGLIPFRNGVLDIETRDLWPHSPTNYFTWSLPYDYNPLATGEPIKQWLLEM 490 Query: 477 F-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535 E +++ + + G Q+F+ + G GG+GKSTL+ L G Sbjct: 491 MQGDESLVELVRAYLHGVVTGRADWQKFLELIGPGGTGKSTLIRLAIALVGFSNCHVTTL 550 Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595 + ++ + R+V++++ + +K +TG D + Sbjct: 551 KRLETSK--------FETANIKDKRLVLVTDAERYTG-DVTTLKALTGEDSLPYEKKMQQ 601 Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLE------- 648 I N+H+ + RR I + + I+ + K + Sbjct: 602 ATGGFKPDCLVIIAGNEHIKTSDYTSGLQRRRITVGMRRKISEENQRNLIKHDNQGNISG 661 Query: 649 --TKYTLEAKKWFLKGVKAYISKGLDVDIPEVCL 680 Y W L+ S+ + Sbjct: 662 EFVPYIPGFLNWVLEMESEKASECIKNAHSRCVK 695 >gi|295101357|emb|CBK98902.1| phage/plasmid primase, P4 family, C-terminal domain [Faecalibacterium prausnitzii L2-6] Length = 439 Score = 166 bits (421), Expect = 1e-38, Method: Composition-based stats. Identities = 49/357 (13%), Positives = 115/357 (32%), Gaps = 22/357 (6%) Query: 420 DLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ-EFLDLVSGYFE 478 + + + +G L L+ G + E + + +L +S Sbjct: 83 EDFPPVTDRIALANGTLYLD-GTFQEGKPE-IVRNRLPVRYDPKAAQPTHWLRFLSDLL- 139 Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538 E + +G L+ NK QR + I+G GG GKS + ++ FG ++ Sbjct: 140 YPEDIPTVQEFIGYCLIPSNKGQRMMVIKGSGGEGKSQIGVVLSRLFGC---------NM 190 Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM-TGGDCMTARLNYGNTY 597 + + + L + + + + +K + T M +Y Sbjct: 191 KDGSIGKISENRFARADLEHTLLCVDDDMRMEALRQTNYVKSIVTAQGQMDLERKGKQSY 250 Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF-DKPIANRDASFAQKLETKYTLEAK 656 + + + D ++RR +++ DKP++ D + Sbjct: 251 QGWMYARLLAFSNGDLQALYDRSDGFYRRQLILTTKDKPLSRVDDPDIAEKMAAEVEGIL 310 Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD--CCDIGENLWEESHSL 714 W +G++ + G + + +E ++ + +++ + + S L Sbjct: 311 LWAFEGLQRLVKNGFQFTESDRAKRNRELVKRDNNNVFDFLESEGYIRLKADACTSSKEL 370 Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLK--QKGFIGGIKREKIEKEWKSKRIIKGL 769 + Y + E+ I +R + L Q+ + + + R G+ Sbjct: 371 YEVYKMWCEEN---SLNAIKSRGFSDALIANQRRYNLESTNNIVNSSGRRVRGFVGI 424 >gi|239622967|ref|ZP_04665998.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239522619|gb|EEQ62485.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 450 Score = 166 bits (421), Expect = 1e-38, Method: Composition-based stats. Identities = 56/467 (11%), Positives = 138/467 (29%), Gaps = 36/467 (7%) Query: 318 IYKKGHFLYTADTKAWYKKDKNNVYIW-SLTLDKITASIMNFLVSM-KEDVFDLSEEPED 375 ++ + Y +K + ++ +W FL V Sbjct: 1 MWHERKRRYCPMSKEAAQNPSADIAVWFDGKAINEVIFCEEFLRDYPMITVNGTFFTVNG 60 Query: 376 NNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGI 435 + + R + ++ AK L+ + +DLL + +G Sbjct: 61 IVNDENRLK--KEIYDRIKPYVTSNIAKRVTNLLDVMRMECCAADLL-LYQDRIHVANGT 117 Query: 436 LDLETGQKVKPTKELYITKSTGTPFVEGEPSQ-EFLDLVSGYFESEEVMDYFTRCVGMAL 494 L+ + + Y + P +L +S E E+++ +G Sbjct: 118 YHLDGTFSTE---KDYCRNRLPVAYHPEAPQPVTWLHFLSQLLEPEDILT-LQEFIGYCF 173 Query: 495 LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLI 554 + K Q+ + + G GG GKS + +++ G +++ + +N + Sbjct: 174 IPSTKGQKMLMLTGKGGEGKSRIGVVLRALLG---------TNMKTGSVAKVETSNFARA 224 Query: 555 RLMGSRIVIISETNENDEINAAKIKQMTGGD-CMTARLNYGNTYSESPASFTPFIVPNKH 613 L +++ + IK + + M +Y + Sbjct: 225 DLEHELLMLDDDMKLEALPQTNNIKAIITAELPMDLERKRQQSYQGDLYVRFIGLGNGVL 284 Query: 614 LFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTL-----EAKKWFLKGVKAYIS 668 + + ++RR I++ +D + + W L+G+ I+ Sbjct: 285 QALHDRSVGFFRRQIIL----TTKEKDPNRKDDPYIAEKMTAEAEGIFLWALEGLHRLIA 340 Query: 669 KGLDVDIPEVCLKAKEEERQGTDTYQAWI--DDCCDIGENLWEESHSLAKSYSEYREQEL 726 + + L + + ++ + + S +L Y ++ + Sbjct: 341 NDFRFTLSQSALDNLNDAVSDGNNIIDFLASEGYIRFRADYEASSKNLYAVYKQWCDDN- 399 Query: 727 NYDRKRISTRTVTLNLKQK--GFIGGIKREKIEKEWKSKRIIKGLKL 771 +S ++ LKQ + + + R G++L Sbjct: 400 --ALNSLSQKSFGSFLKQNESRYNLEYTNKVNIGGGRFARGFVGIEL 444 >gi|315221878|ref|ZP_07863790.1| phage/plasmid primase, P4 family protein [Streptococcus anginosus F0211] gi|315189111|gb|EFU22814.1| phage/plasmid primase, P4 family protein [Streptococcus anginosus F0211] Length = 513 Score = 166 bits (421), Expect = 1e-38, Method: Composition-based stats. Identities = 41/281 (14%), Positives = 94/281 (33%), Gaps = 18/281 (6%) Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEG------EPSQEFLDLVSGY- 476 S + ++GI DL+ + + I T + + + +F + + Sbjct: 152 SDRNLIPVKNGIFDLKRKALLPFSPSYIIKSKINTAYHDKPMKPILDKWFDFDEWLKSIA 211 Query: 477 FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEAS 536 E+++ + + A+ + + G G +GK T +L+ G + + N + + Sbjct: 212 CNDEDIVTLLWQIMNEAINPNYTRGKMAILYGEGNNGKGTFQSLLINLIGAKNISNLKPN 271 Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNT 596 + + L L G I + + + + + GD + + Sbjct: 272 QFEE---------SFQLSALEGKVCNIGDDISNKYLDEVSDLMSVVTGDSVHVNPKHQQP 322 Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAK 656 Y E+ N+ R + W+RR ++PF+ + K + Sbjct: 323 Y-EAVYKCFCLFSGNELPKARAKNQGWYRRLCIVPFNADFNGQKEKPEIKNQYLKDERLL 381 Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWI 697 +W L + K P+ + E + D Y +++ Sbjct: 382 EWVLYRILNL-EKFDKFIEPQAVKELLSEYKINNDFYFSFV 421 >gi|160944691|ref|ZP_02091918.1| hypothetical protein FAEPRAM212_02205 [Faecalibacterium prausnitzii M21/2] gi|158443875|gb|EDP20879.1| hypothetical protein FAEPRAM212_02205 [Faecalibacterium prausnitzii M21/2] Length = 441 Score = 166 bits (421), Expect = 1e-38, Method: Composition-based stats. Identities = 50/357 (14%), Positives = 115/357 (32%), Gaps = 22/357 (6%) Query: 420 DLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ-EFLDLVSGYFE 478 + + + +G L L+ G + E + + P +L +S Sbjct: 85 EDFPPVTDRIALANGTLYLD-GTFQEGKPE-IVRNRLPIRYDPKAPQPSHWLRFLSDLL- 141 Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538 E + +G L+ NK QR + I+G GG GKS + ++ FG ++ Sbjct: 142 YPEDIPTVQEFIGYCLIPSNKGQRMMVIKGSGGEGKSQIGVVLSRLFGC---------NM 192 Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM-TGGDCMTARLNYGNTY 597 + + + L + + + + +K + T M +Y Sbjct: 193 KDGSIGKISENRFARADLEHTLLCVDDDMRMEALRQTNYVKSIVTAQGQMDLERKGKQSY 252 Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF-DKPIANRDASFAQKLETKYTLEAK 656 + + + D ++RR +++ DKP++ D + Sbjct: 253 QGWMYARLLAFSNGDLQALYDRSDGFYRRQLILTTKDKPLSRVDDPDIAEKMAAEVEGIL 312 Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD--CCDIGENLWEESHSL 714 W +G++ + G + + +E ++ + +++ + + S L Sbjct: 313 LWAFEGLQRLVKNGFQFTESDRAKRNRELVKRDNNNVFDFLESEGYIRLKADACTSSKEL 372 Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLK--QKGFIGGIKREKIEKEWKSKRIIKGL 769 + Y + E+ I R + L Q+ + + + R G+ Sbjct: 373 YEVYRMWCEEN---SLNAIKARGFSDALIANQRRYNLESTNNIVNSSGRRVRGFFGI 426 >gi|220915119|ref|YP_002490424.1| hypothetical protein Mnod_7767 [Methylobacterium nodulans ORS 2060] gi|219952973|gb|ACL63358.1| hypothetical protein Mnod_7767 [Methylobacterium nodulans ORS 2060] Length = 846 Score = 166 bits (420), Expect = 1e-38, Method: Composition-based stats. Identities = 100/683 (14%), Positives = 186/683 (27%), Gaps = 100/683 (14%) Query: 6 WKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLP---ACGFGFVCG--- 59 W++ N ++ + ++ G+KRP + + ++ +++ G + G Sbjct: 19 WRDYGDALRTNKWRAVHIQHGEKRPLLKEWPQRGVPTAAEVETWQRPERASMGLILGPQP 78 Query: 60 --VGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEG----- 112 ++ + A D D A + E R+G K+ F K Sbjct: 79 SLPPDEHVVAVDADVFTPAAATAVNEILERRLPGAPHRLGNPAKVGTRFVRTKTADGSEP 138 Query: 113 ---------IKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFK--VED 161 T+ +++LG GQ V + HP Y W + + + Sbjct: 139 VRRQGRRFIFDGAPDTKENHNRVELLGQGQQSVVHGTHPC-GVAYAWPSGTSIVEMHPSE 197 Query: 162 TPLLSEEDVEYLFKFFQEITVPLVKDKKSIIP-SKTWTNNNNRQYT---NREITAFLSCF 217 PL+ +++ + S S++ N T A LS Sbjct: 198 LPLIPIDELNAIIAECDTAMEAAGGVLVSGATFSRSGRNGGGADLTALVEANAEALLSGL 257 Query: 218 GEEFYN-GSHDEWIPVVMAVH-------HETRGSSKGKEIARRWSKQGSTYDE------E 263 + + S + W+ A E R + RW T D Sbjct: 258 ADTRNDISSRNRWVMFTKAFAALCLPALGEDRVAEALFRFTDRWETAPGTADMEEIRRII 317 Query: 264 NFNYKWDTFDFEEIGDTAKKRST------FTSLFYHHGKLIPKGLLASRFSDAYNKAMFS 317 K E+ ++R L + + + + + Sbjct: 318 REEDKPAQMGLREVFHMMRERGAPLPGNFLARLDFEGVPVNDNDMPGATGRAPRAPKVAP 377 Query: 318 IYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNN 377 H + Y +N + S+ + + + + + Sbjct: 378 ADMPEHVSALSAMNGRYAVARNGGST-VVLRFGPEGSVPSMMTKTAFMDLEAPNKITGPD 436 Query: 378 KNS-KSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGIL 436 WF RR E A +T + L L G + Sbjct: 437 ARRHPIAPAWFGWSGRRTYPEGV-----------AMWPQGVTGEGLPVPEGALNTWQGFV 485 Query: 437 DLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF--ESEEVMDYFTRCVGMAL 494 TP G + + + + + A Sbjct: 486 --------------------STPAAAGSDWPTIRAYLRDVICAGDQSLFAWLMNWLAHAA 525 Query: 495 -LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL 553 K +G GSGK+T NL++ F +V++A + GK N Sbjct: 526 QRPHEKPGTAPIFKGPQGSGKTTFTNLLRAIFHPAHVVSA------ERPEALLGKHN--- 576 Query: 554 IRLMGSRIVIISETN-ENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612 L + V+ E D ++K M +T + P+ + N+ Sbjct: 577 AHLREALFVMADEAVFAGDPAANNRLKAMVTDATLTIEPKGIDA-VSVPSFHRFVMTSNE 635 Query: 613 HLFVRNPDDAWWRRYIVIPFDKP 635 +R DA RR+ V FD Sbjct: 636 DHVIRAEADA--RRWAV--FDVS 654 >gi|319788914|ref|YP_004090229.1| hypothetical protein Rumal_3920 [Ruminococcus albus 7] gi|315450781|gb|ADU24343.1| hypothetical protein Rumal_3920 [Ruminococcus albus 7] Length = 425 Score = 166 bits (420), Expect = 1e-38, Method: Composition-based stats. Identities = 62/377 (16%), Positives = 122/377 (32%), Gaps = 30/377 (7%) Query: 408 SLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPS- 466 + S+ + F+ Q+G LDL+ P +E + + + Sbjct: 63 QIMDALRLYTYSEPIPPDMNFIHVQNGKLDLQGNFY--PNREFCTNR-LNICYDPNIRNG 119 Query: 467 ----QEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIK 522 ++F+ + E+V+ +G L+ K Q+ + + G GG GKS + +++ Sbjct: 120 AYYPEQFMTFLLELLTPEDVVT-LQEYLGYLLIPSTKGQKMMFLIGQGGEGKSRIGIVLR 178 Query: 523 YAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMT 582 F + + + N L ++I + + IK + Sbjct: 179 EIFRD--------NMLTGNIHR-IETDRFFRYNLKDRLLMIDDDMQMQALSSTGYIKNLV 229 Query: 583 GGD-CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR-- 639 + + + + + + + RR I++ P R Sbjct: 230 TAETPIDVEAKGKQSEQALLYTRLLCFGNGSPKTLYDKSKGFSRRMIILT-TLPPPERRI 288 Query: 640 -DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID 698 D A+K + W G+ ++ I + + E Q +++ Sbjct: 289 IDPYIAEK-FIAEKEKIFCWMYDGLLRLLANNYRFTISDRARQNVMETMQDNCNITEFLE 347 Query: 699 --DCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE-K 755 D GE L S +L SY + + KR T T +KQ IK Sbjct: 348 DTDRVMYGEKLCVSSAALYDSYYRWCDDNALTALKR---DTFTSWVKQNSDQFSIKYTNN 404 Query: 756 IEKEWKSKRIIKGLKLK 772 I K+ R +G+ +K Sbjct: 405 ISVGGKTVRGFRGIAIK 421 >gi|76787223|ref|YP_330673.1| prophage Sa05, P4 family DNA primase [Streptococcus agalactiae A909] gi|76562280|gb|ABA44864.1| prophage Sa05, DNA primase, P4 family [Streptococcus agalactiae A909] Length = 480 Score = 166 bits (419), Expect = 2e-38, Method: Composition-based stats. Identities = 48/286 (16%), Positives = 94/286 (32%), Gaps = 19/286 (6%) Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE------FLDLVSGY-FES 479 + Q+GI+DL T + + + + IT T + + F D ++ Sbjct: 121 YLIPVQNGIIDLRTKELLPFSPKYVITSKISTAYHAPKRVPTDREGKTFDDWLNSIACND 180 Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539 E++ F + + A+ + +F G G +GK T + G V + Sbjct: 181 SELVTLFWQIILEAINPNHTRNKFAIFYGDGNNGKGTFQRFLINLIGESNVSALKPVQFA 240 Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599 + +L L+G I E N + + +T GD + G E Sbjct: 241 EK---------HNLETLVGKVCNIGDEAPNEYLKNPSDLMSITSGDTVLVNPK-GRPAFE 290 Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWF 659 + N N W+RR +++PF+ K + + ++ Sbjct: 291 ATFKLFNIFSGNYIPNGGNKTKGWYRRIMIVPFNADFNGEKEKPWIKNDFLGKKKVLEYA 350 Query: 660 LKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWI-DDCCDIG 704 L P+ EE ++ D +W+ ++ + G Sbjct: 351 LYKAIN-QESFTHFIEPQAVKGLLEEYQEDNDYLLSWVKNEYMEKG 395 >gi|55822742|ref|YP_141183.1| DNA primase, phage associated [Streptococcus thermophilus CNRZ1066] gi|55738727|gb|AAV62368.1| DNA primase, phage associated [Streptococcus thermophilus CNRZ1066] Length = 500 Score = 165 bits (418), Expect = 2e-38, Method: Composition-based stats. Identities = 51/297 (17%), Positives = 99/297 (33%), Gaps = 24/297 (8%) Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE------FLDLVSGY-FES 479 + Q+GILDL+ + + + IT T + + + F D ++ Sbjct: 142 NLVPVQNGILDLKNKELLPFNPKYVITSKIATAYKPPKSIPKDREGNTFDDWLNSIACGD 201 Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539 E++ F + + A+ +F G G +GK T L+ G V + + Sbjct: 202 SELVTLFWQIILEAINPNYTRNKFAIFYGDGNNGKGTFQRLLINLIGESNVSALKPAQFS 261 Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599 +L L+G I E + N + + +T GD + G E Sbjct: 262 DK---------FNLETLVGKVCNIGDEAPNDYLKNPSDLMSITSGDTVLVNPK-GRPAFE 311 Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR-DASFAQKLETKYTLEAKKW 658 + N N W+RR +++PF+ + + + + ++ Sbjct: 312 ATFKLFNIFSGNYIPNGGNKTKGWYRRIMIVPFNADFNGQTEKPWIKNEFLADKD-VLEY 370 Query: 659 FLKGVKAYISKGL-DVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714 L K + P+ EE ++ D +I + + N W E + Sbjct: 371 VL--YKTVNQEPFTHFIEPKAVKDLLEEYQEDNDYLLDFIRN--EYIPNGWHELDVV 423 >gi|218132428|ref|ZP_03461232.1| hypothetical protein BACPEC_00287 [Bacteroides pectinophilus ATCC 43243] gi|217992766|gb|EEC58768.1| hypothetical protein BACPEC_00287 [Bacteroides pectinophilus ATCC 43243] Length = 414 Score = 165 bits (418), Expect = 2e-38, Method: Composition-based stats. Identities = 47/395 (11%), Positives = 122/395 (30%), Gaps = 26/395 (6%) Query: 378 KNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILD 437 + ++ K + + L+ + D + +G L Sbjct: 3 DDLPLRGEIYDKLKFCAVNNIPRKITNILEVLKLEAQVPDFPPEQDR----IHVFNGTL- 57 Query: 438 LETGQKVKPTKELYITKSTGTPFVEGEPSQ-EFLDLVSGYFESEEVMDYFTRCVGMALLG 496 L G + + + P+ +L+ ++G E + +G L+ Sbjct: 58 LLNGTFTEGRPA-IVRSRLPVVYNPDAPAPVIWLNFLNGLLH-AEDIPTLQEFIGYCLIP 115 Query: 497 GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRL 556 NK QR + I+G GG GKS + ++ FG +++ + + + L Sbjct: 116 SNKGQRMMVIKGNGGEGKSQIGAVLSAIFG---------TNMKDGNIGKISENRFARADL 166 Query: 557 MGSRIVIISETNENDEINAAKIKQM-TGGDCMTARLNYGNTYSESPASFTPFIVPNKHLF 615 + + + +K + T M +Y + Sbjct: 167 EHILLCVDDDMRMEALRQTNYVKSIVTAQGKMDLERKGKQSYQGWMFARLLAFSNGDLQA 226 Query: 616 VRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDV 673 + + D ++RR +V+ + +R D A+K+ W +G++ ++ + Sbjct: 227 LYDRSDGFYRRQLVLTTKEKPVDRADDPDLAEKM-KAEAEGIFLWAFEGLQRLVANNFKL 285 Query: 674 DIPEVCLKAKEEERQGTDTYQAWIDD--CCDIGENLWEESHSLAKSYSEYREQELNYDRK 731 + + +E ++ + +++ + S + Y + E+ Sbjct: 286 TESDRIRENREAVKRDNNNIFDFMESEGYIRRKADASISSKEFYEIYRMWCEENSLA--- 342 Query: 732 RISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRII 766 + R+ + + ++ +R+ Sbjct: 343 PLKARSFSDAMIANAKKFNLEHCNNITNSAGRRVW 377 >gi|295102180|emb|CBK99725.1| phage/plasmid primase, P4 family, C-terminal domain [Faecalibacterium prausnitzii L2-6] Length = 439 Score = 165 bits (418), Expect = 2e-38, Method: Composition-based stats. Identities = 49/357 (13%), Positives = 114/357 (31%), Gaps = 22/357 (6%) Query: 420 DLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ-EFLDLVSGYFE 478 + + + +G L L+ G + E + + +L +S Sbjct: 83 EDFPPVTDRIALANGTLYLD-GTFQEGKPE-IVRNRLPVKYDPKAAQPVHWLRFLSDLL- 139 Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538 E + +G L+ NK QR + I+G GG GKS + ++ FG ++ Sbjct: 140 YPEDIPTVQEFIGYCLIPSNKGQRMMVIKGNGGEGKSQIGVVLSRLFGC---------NM 190 Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM-TGGDCMTARLNYGNTY 597 + + + L + + + + +K + T M +Y Sbjct: 191 KDGSIGKISENRFARADLEHTLLCVDDDMRMEALRQTNYVKSIVTAQGQMDLERKGKQSY 250 Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF-DKPIANRDASFAQKLETKYTLEAK 656 + + + D ++RR +++ DKP++ D + Sbjct: 251 QGWMYARLLAFSNGDLQALYDRSDGFYRRQLILTTKDKPLSRVDDPDIAEKMAAEVEGIL 310 Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD--CCDIGENLWEESHSL 714 W +G++ + G + + +E ++ + +++ + + S L Sbjct: 311 LWAFEGLQRLVKNGFQFTESDRAKRNRELVKRDNNNVFDFLESEGYIRLKADACTSSKEL 370 Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLK--QKGFIGGIKREKIEKEWKSKRIIKGL 769 + Y + E+ I R + L Q+ + + + R G+ Sbjct: 371 YEVYKMWCEEN---SLNAIKARGFSDALIANQRRYNLESTNNIVNSSGRRVRGFIGI 424 >gi|260589348|ref|ZP_05855261.1| putative primase [Blautia hansenii DSM 20583] gi|260540429|gb|EEX20998.1| putative primase [Blautia hansenii DSM 20583] Length = 458 Score = 165 bits (417), Expect = 3e-38, Method: Composition-based stats. Identities = 65/450 (14%), Positives = 142/450 (31%), Gaps = 38/450 (8%) Query: 328 ADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWF 387 ++ W++ + + + + L + F D+ + R Sbjct: 29 PYSQGWFEDGQIDEVAFCENFLQRMP-----LKCINGIFFSYDGMLPDSEVEKEIYRMVK 83 Query: 388 NTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPT 447 + + L S+ L + +G L Sbjct: 84 PVLTK--------GISKKVKQLLEVLKLEAYSEELPVQMDRIHVNNGTYFLNGDFTE--- 132 Query: 448 KELYITKSTGTPFV-EGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHI 506 K+ + + + + +L +S E ++ + +G L+ NKAQ+ + I Sbjct: 133 KKEFCLNRLPVNYEMKEAKPERWLKFLSELLEEDD-ISTLQEYMGYCLIPSNKAQKLLII 191 Query: 507 RGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISE 566 G GG GKS + +++ G + + + NR + L +++ + Sbjct: 192 LGKGGEGKSRIGLVMRKILGT-NMNVSNIQKVEHNR--------FARANLEYRLLMVDDD 242 Query: 567 TNENDEINAAKIKQMTG-GDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625 + IK + D M + + + + ++R Sbjct: 243 MKLEALKDTNYIKTIVTLEDKMDLERKSKQSVQGNLYVRFLCFGNGSLSALHDRSYGFYR 302 Query: 626 RYIVIPFDKPIANR--DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAK 683 R I++ +R D +KL+ + W L+G+K + I E K Sbjct: 303 RQIILTVKDVPPDRVDDPYLIEKLQR-EADDIFLWCLEGLKRLLKNKYRFTISERAKKNL 361 Query: 684 EEERQGTDTYQAWIDD--CCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLN 741 E + + A++ + EN S +L ++Y + E K +S ++ + Sbjct: 362 HEAMESGNNIIAFMQSSGYIRLEENTTATSKNLYQAYCRWCEDNTE---KPMSAKSFSGY 418 Query: 742 LK--QKGFIGGIKREKIEKEWKSKRIIKGL 769 LK +K + K+ R +G+ Sbjct: 419 LKENEKKYHIHYSTNIPSDNGKNARGFQGI 448 >gi|291562404|emb|CBL41220.1| phage/plasmid primase, P4 family, C-terminal domain [butyrate-producing bacterium SS3/4] Length = 463 Score = 165 bits (417), Expect = 3e-38, Method: Composition-based stats. Identities = 48/395 (12%), Positives = 120/395 (30%), Gaps = 26/395 (6%) Query: 378 KNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILD 437 + ++ K + + L+ + D + +G L Sbjct: 52 DDLPLRGEIYDKLKFCAVNNIPRKITNILEVLKLEAQVPDFPPEQDR----IHLSNGTL- 106 Query: 438 LETGQKVKPTKELYITKSTGTPFVEGEPSQ-EFLDLVSGYFESEEVMDYFTRCVGMALLG 496 L G + + + P+ +L + G E + +G L+ Sbjct: 107 LLNGTFTEGRPT-IVRNRLPVVYNPHAPTPVTWLKFLDGLLH-AEDIPTLQEFIGYCLIP 164 Query: 497 GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRL 556 NK QR + I+G GG GKS + ++ FG +++ + + + L Sbjct: 165 SNKGQRMMVIKGNGGEGKSQIGAVLSTIFG---------TNMKDGSIGKISENRFARADL 215 Query: 557 MGSRIVIISETNENDEINAAKIKQM-TGGDCMTARLNYGNTYSESPASFTPFIVPNKHLF 615 + + + +K + T M +Y + Sbjct: 216 EHILLCVDDDMRMEALRQTNYVKSIVTAQGKMDLERKGKQSYQGWMFARLLAFSNGDLQA 275 Query: 616 VRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDV 673 + + D ++RR +V+ + +R D A+K+ + W +G++ ++ Sbjct: 276 LYDRSDGFYRRQLVLTTKEKPVDRADDPDLAEKM-KAESEGIFLWAFEGLQRLVANNFKF 334 Query: 674 DIPEVCLKAKEEERQGTDTYQAWIDD--CCDIGENLWEESHSLAKSYSEYREQELNYDRK 731 + + +E ++ + ++D + S + Y + E+ Sbjct: 335 TESDRIRENREAVKRDNNNIFDFMDSEGYIQRKADASISSKDFYEIYRMWCEENSLA--- 391 Query: 732 RISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRII 766 + R+ + + ++ +R+ Sbjct: 392 PLKARSFSDAMIANAGRFNLEHCNNITNSAGRRVW 426 >gi|291556152|emb|CBL33269.1| phage/plasmid primase, P4 family, C-terminal domain [Eubacterium siraeum V10Sc8a] Length = 457 Score = 165 bits (416), Expect = 3e-38, Method: Composition-based stats. Identities = 49/395 (12%), Positives = 121/395 (30%), Gaps = 26/395 (6%) Query: 378 KNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILD 437 + ++ K + + L+ + D + +G L Sbjct: 52 DDLPLRGEIYDKLKFCAVNNIPRKITNILEVLKLEAQVPDFPPEQDR----IHLSNGTL- 106 Query: 438 LETGQKVKPTKELYITKSTGTPFVEGEPSQE-FLDLVSGYFESEEVMDYFTRCVGMALLG 496 L G + + + P+ E + + + G E + +G L+ Sbjct: 107 LLDGTFTEGRPA-IVRSRLPVAYNPNAPAPEIWQNFLDGLLH-AEDIPTLQEFIGYCLIP 164 Query: 497 GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRL 556 NK QR + I+G GG GKS + ++ FG +++ + + + L Sbjct: 165 SNKGQRMMVIKGNGGEGKSQIGAVLSSIFG---------TNMKDGSIGKISENRFARADL 215 Query: 557 MGSRIVIISETNENDEINAAKIKQM-TGGDCMTARLNYGNTYSESPASFTPFIVPNKHLF 615 + + + +K + T M +Y + Sbjct: 216 EHILLCVDDDMRMEALRQTNYVKSIVTAQGKMDLERKGKQSYQGWMFARLLAFSNGDLQA 275 Query: 616 VRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDV 673 + + D ++RR +V+ + NR D A+K+ W L+G++ ++ Sbjct: 276 LYDRSDGFYRRQLVLTTKERPVNRADDPDLAEKM-KAEAEGIFLWALEGLRRLVASNFKF 334 Query: 674 DIPEVCLKAKEEERQGTDTYQAWIDD--CCDIGENLWEESHSLAKSYSEYREQELNYDRK 731 + + +E ++ + +++ + S + Y + E+ Sbjct: 335 TESDRIRENREAVKRDNNNIFDFMESEGYIRRKADASISSKDFYEIYRMWCEENSLA--- 391 Query: 732 RISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRII 766 + R+ + + ++ +R+ Sbjct: 392 PLKARSFSDAMIANAGRFNLEHCNNITNSAGRRVW 426 >gi|153812927|ref|ZP_01965595.1| hypothetical protein RUMOBE_03334 [Ruminococcus obeum ATCC 29174] gi|149831005|gb|EDM86095.1| hypothetical protein RUMOBE_03334 [Ruminococcus obeum ATCC 29174] Length = 459 Score = 164 bits (415), Expect = 5e-38, Method: Composition-based stats. Identities = 49/367 (13%), Positives = 116/367 (31%), Gaps = 24/367 (6%) Query: 420 DLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-SQEFLDLVSGYFE 478 + + + +G + G + + + P + +L + Sbjct: 91 EDFPPEANKIHLANGTI-YIDGTFIPEKP-DIVRMRLPVNYNPDTPEASTWLSFLDQLL- 147 Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538 E + +G L+ NK QR + I+G GG GKS + ++ G S++ Sbjct: 148 YPEDIPTLQEFIGYCLIPSNKGQRMMIIKGNGGEGKSQIGAVLNSLLG---------SNM 198 Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM-TGGDCMTARLNYGNTY 597 + + + L + + + + +K + T M +Y Sbjct: 199 KDGSIGKISENRFARADLEHILLCVDDDMRMEALKQTSYVKSIVTAQGKMDLERKGKQSY 258 Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR-DASFAQKLETKYTLEAK 656 S + + D ++RR +V+ + A+R D + + K Sbjct: 259 QGWLFSRLLAFSNGDLQALYDRSDGFYRRQLVLTAKEKPADRVDDPYLAEKMKKEAESIF 318 Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD--CCDIGENLWEESHSL 714 W KG++ + + +E ++ + +++ S L Sbjct: 319 LWAFKGLQRLVRQNFKFTESPRIKANRENVKRDNNNVLEFLESEGYIRFQAEASASSKEL 378 Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRII--KGLKL- 771 +SY + E+ + + + + ++ K +R+ G+K+ Sbjct: 379 YESYRLWCEENSMTA---LKNCSFSDAMIAVQAKYNLEHCNTIKNSAGRRVWGFTGVKVI 435 Query: 772 -KPAFES 777 KP++ Sbjct: 436 TKPSYTD 442 >gi|317056910|ref|YP_004105377.1| hypothetical protein Rumal_2258 [Ruminococcus albus 7] gi|315449179|gb|ADU22743.1| hypothetical protein Rumal_2258 [Ruminococcus albus 7] Length = 457 Score = 164 bits (415), Expect = 5e-38, Method: Composition-based stats. Identities = 62/366 (16%), Positives = 121/366 (33%), Gaps = 30/366 (8%) Query: 419 SDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPS-----QEFLDLV 473 S+ + F+ Q+G LDL+ P +E + + + ++F+ + Sbjct: 106 SEPIPPDMNFIHVQNGKLDLQGNFY--PNREFCTNR-LNICYDPNIRNGAYYPEQFMTFL 162 Query: 474 SGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533 E+V+ +G L+ K Q+ + + G GG GKS + +++ F + Sbjct: 163 LELLTPEDVVT-LQEYLGYLLIPSTKGQKMMFLIGQGGEGKSRIGIVLREIFRD------ 215 Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGD-CMTARLN 592 + + N L ++I + + IK + + + Sbjct: 216 --NMLTGNIHR-IETDRFFRYNLKDRLLMIDDDMQMQALSSTGYIKNLVTAETPIDVEAK 272 Query: 593 YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR---DASFAQKLET 649 + + + + + RR I++ P R D A+K Sbjct: 273 GKQSEQALLYTRLLCFGNGSPKTLYDKSKGFSRRMIILT-TLPPPERRIIDPYIAEK-FI 330 Query: 650 KYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID--DCCDIGENL 707 + W G+ ++ I + + E Q +++ D GE L Sbjct: 331 AEKEKIFCWMYDGLLRLLANNYRFTISDRARQNVMETMQDNCNITEFLEDTDRVMYGEKL 390 Query: 708 WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE-KIEKEWKSKRII 766 S +L SY + + KR T T +KQ IK I K+ R Sbjct: 391 CVSSAALYDSYYRWCDDNALTALKR---DTFTSWVKQNSDQFSIKYTNNISVGGKTVRGF 447 Query: 767 KGLKLK 772 +G+ +K Sbjct: 448 RGIAIK 453 >gi|191639830|ref|YP_001988996.1| RepA protein [Lactobacillus casei BL23] gi|190714132|emb|CAQ68138.1| RepA protein [Lactobacillus casei BL23] gi|327383940|gb|AEA55416.1| Phage/plasmid primase, P4 family [Lactobacillus casei LC2W] gi|327387122|gb|AEA58596.1| Phage/plasmid primase, P4 family [Lactobacillus casei BD-II] Length = 528 Score = 164 bits (415), Expect = 5e-38, Method: Composition-based stats. Identities = 67/407 (16%), Positives = 137/407 (33%), Gaps = 20/407 (4%) Query: 372 EPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGE 431 E ++ + YR ++ + E S + + + Sbjct: 125 EFTKTTESRTTKEMLKWGLYRESDITGARRFLQRISYNEDYGKRSPFDE--NPHPELVAF 182 Query: 432 QDGILDLETGQKVKPTKELYITKSTGTPFVEG-EPSQEFLDLVSGYFESEEVMDYFTRCV 490 +G + T + + + + Y+ + + E L++ + F + Sbjct: 183 TNGTYSILTNKMQESSADNYMLNAHEYAVDPDRDDCPETERLLAAMMGDAAI--TFEEFI 240 Query: 491 GMALLGGNK-AQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549 G + Q F+ + G GG GKSTL+ I G V ++ +D+ G Sbjct: 241 GYMFYRSYRPFQAFLWLYGTGGEGKSTLIRRITNLIGRDNVSASKPADLAN------GDR 294 Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609 L G I+++ + + A IK +TGGD + A + + Sbjct: 295 RFETANLYGKEANIVADVGSDYLKSTAAIKSLTGGDYIAAEFKGIQNF-KFMNYAKLLFS 353 Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYIS- 668 N+ + + R VI + Q + K E ++ +K + + Sbjct: 354 ANEMPAFSDHSSGFADRVTVIKMINGDTRHTHWWDQFDDAKMDEETPRFAMKCMHMFAKA 413 Query: 669 -KGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDI--GENLWEESHSLAKSYSEYREQE 725 K + P+ + A +E D ++ ++D +I E+ E S + Y + + Sbjct: 414 LKSGGLTKPDSVVNASQEWLDANDHFKEFLDQYAEINLNEDRGEVSTVVTAEYKRFCQDN 473 Query: 726 LNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEW-KSKRIIKGLKL 771 D+ +T+ +T L G R + + + R GL+L Sbjct: 474 NYMDKT--TTQAITKKLDAYGVKKVNSRRGFDNDTFGNTRRYIGLRL 518 >gi|116627642|ref|YP_820261.1| phage DNA polymerase [Streptococcus thermophilus LMD-9] gi|116100919|gb|ABJ66065.1| Phage DNA polymerase, contains ATPase domain [Streptococcus thermophilus LMD-9] gi|312278167|gb|ADQ62824.1| Phage DNA polymerase, contains ATPase domain [Streptococcus thermophilus ND03] Length = 501 Score = 164 bits (414), Expect = 5e-38, Method: Composition-based stats. Identities = 47/282 (16%), Positives = 94/282 (33%), Gaps = 22/282 (7%) Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE------FLDLVSGY-FES 479 + Q+GILDL+ + + + IT T + + + F D ++ Sbjct: 142 NLVPVQNGILDLKNKKLLPFNPKYVITSKIATAYKPPKSIPKDREGNTFDDWLNSIACGD 201 Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539 E++ F + + A+ +F G G +GK T L+ G V + + Sbjct: 202 SELVTLFWQIILEAINPNYTRNKFAIFYGDGNNGKGTFQRLLINLIGESNVSALKPAQFS 261 Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599 +L L+G I E + N + + +T GD + G E Sbjct: 262 DK---------FNLETLVGKVCNIGDEAPNDYLKNPSDLMSITSGDTVLVNPK-GRPAFE 311 Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR-DASFAQKLETKYTLEAKKW 658 + N N W+RR +++PF+ + + + + ++ Sbjct: 312 ATFKLFNIFSGNYIPNGGNKTKGWYRRIMIVPFNADFNGQIEKPWIKNEFLADKD-VLEY 370 Query: 659 FLKGVKAYISKGL-DVDIPEVCLKAKEEERQGTDTYQAWIDD 699 L K + P+ EE ++ D ++ + Sbjct: 371 VL--YKTVNQEPFTHFIEPKAVKDLLEEYQEDNDYLLDFLKN 410 >gi|134287274|ref|YP_001110970.1| ATPase [Heliothis virescens ascovirus 3e] gi|133722182|gb|ABO37304.1| ATPase [Heliothis virescens ascovirus 3e] Length = 1052 Score = 164 bits (414), Expect = 6e-38, Method: Composition-based stats. Identities = 76/334 (22%), Positives = 138/334 (41%), Gaps = 16/334 (4%) Query: 311 YNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLS 370 +N ++ + L + WY K + +V + L+++ S M + ED S Sbjct: 574 FNGNIWKPVRNDEALIRKELPIWYDKFEEHVSEY---LERLAESGMGAVPHGDED----S 626 Query: 371 EEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLG 430 + + + R + + + +N S + ++L + S +D + + Sbjct: 627 NGGRGPSVVTVAKRKFLSVRRKCKNSAPQSGVITQIRALNTHDAGAYKSTKMDDNDNIIA 686 Query: 431 EQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPS-----QEFLDLVSGYFESEEVMDY 485 +D + +T K T E I++ +V + + D + F EV +Y Sbjct: 687 FKDMVFCRDTLTLRKGTPEDMISRCLNCNYVPYDELTDEVRKFVNDFFTSLFPDPEVKEY 746 Query: 486 FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545 F V G N ++++ GVG +GKS L+ + + G V +++ I + Sbjct: 747 FLLSVAQIFRGSNIFKQYMVWTGVGNNGKSVLIRMFECLLGPLLVKLSKSVLISNKM--D 804 Query: 546 AGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN--TYSESPAS 603 G NP + +L G R+ + E +D+IN + K ++G D AR Y A Sbjct: 805 VGSVNPDMCKLQGVRLAVTDEIAGSDDINVGQAKLLSGNDTFMARDLYMKSAEMEPIKAQ 864 Query: 604 FTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637 F P IV N +R PD+A W+R+ +IPFD Sbjct: 865 FIPIIVCNDLPSLREPDEAAWKRFHIIPFDSYFT 898 >gi|16905404|gb|AAL31318.1|L00966_1 ATP/GTP binding site motif A [African swine fever virus] Length = 348 Score = 163 bits (413), Expect = 8e-38, Method: Composition-based stats. Identities = 59/317 (18%), Positives = 110/317 (34%), Gaps = 27/317 (8%) Query: 487 TRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEA 546 + A+ G K + G G +GK+ LM L+ G+ Y S + R A Sbjct: 1 MFYLSTAIFRGLKEALMLLWLGGGCNGKTFLMRLVAMVLGDHYASKLNISLLTSCR-ETA 59 Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 K N + +RL G ETN+++ +N +++K+M +TAR S + T Sbjct: 60 EKPNSAFMRLKGRGYGYFEETNKSEVLNTSRLKEMVNPGDVTARELNQKQES-FQMTATM 118 Query: 607 FIVPNKHLFVRNPDDAWWRRYI----VIPFDKPI-------ANRDASFAQKLET-----K 650 N + + D WRR + F D F + Sbjct: 119 VAASNYNFIIDTTDHGTWRRLRHYRSKVKFCHNPDPNNSYEKKEDPRFIHEYIMDPNCQN 178 Query: 651 YTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEE 710 +F + ++ + + E R+ DT +I + + Sbjct: 179 AFFSILVYFWEKLQKEYNGQIKKVFCPTIESETEAYRKSQDTLHRFITERVVESPSAETV 238 Query: 711 S--HSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKG 768 + +Y+E+ +N R + L L Q+ + + ++ RI+KG Sbjct: 239 YNLSEVVTAYAEWYNTNINVKRH------IALELSQE-LENSVLEKYLQWSPNKTRILKG 291 Query: 769 LKLKPAFESVDDNSNII 785 ++ FE++ + I Sbjct: 292 CRILHKFETLQPGESYI 308 >gi|227523364|ref|ZP_03953413.1| prophage Lp4 protein 8, DNA primase/helicase [Lactobacillus hilgardii ATCC 8290] gi|227089470|gb|EEI24782.1| prophage Lp4 protein 8, DNA primase/helicase [Lactobacillus hilgardii ATCC 8290] Length = 484 Score = 163 bits (413), Expect = 8e-38, Method: Composition-based stats. Identities = 50/361 (13%), Positives = 113/361 (31%), Gaps = 25/361 (6%) Query: 390 DYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKE 449 R + + A+ + I + +GI +L + + + + Sbjct: 88 IKRLIGMMYAPFNEREAEEVIYHLINWAKVKEPTVDRYLIPVANGIWNLHRHELIPFSPD 147 Query: 450 LYITKSTGTPF-----VEGEPSQEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRF 503 T T + ++ E++ + +L G ++ Sbjct: 148 YVFTTKIATKYVNNPVPPNINGWTVDGWLNEIANHDPEIVKLLWEIINDSLNGNFTRKKA 207 Query: 504 IHIRGV-GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIV 562 I + G +GK T LI+ G V + + + + L L+G + Sbjct: 208 IFLYSEKGNTGKGTFQQLIQNLVGKSNVGSLKVNQFDE---------RFKLALLVGKTVC 258 Query: 563 IISETNENDEI-NAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDD 621 I +T + I +++ + GD +T + ++ T N N Sbjct: 259 IGDDTPPDIYIKDSSSFNSVVTGDLVTIEYKGQDGFTT-TLRCTVIQSCNGLPNFHNK-G 316 Query: 622 AWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLK 681 RR I++PF+ + ++ + + + ++ L +A D+P V + Sbjct: 317 GTMRRMIIVPFNNHFEGSNDNWDIRDDYMSRQDVLQYVL--YRALQLDFKKFDVPTVSKQ 374 Query: 682 AKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLN 741 A E + D + + E ++ + + Y +Y + K + Sbjct: 375 ALSEFEKDNDPLIGF-REFFLSLEVDKIPTYYVYEYYKKYCQING---LKALGQNKFIRR 430 Query: 742 L 742 L Sbjct: 431 L 431 >gi|307149700|ref|YP_003891008.1| primase 2 [Cyanothece sp. PCC 7822] gi|306986766|gb|ADN18643.1| Primase 2 [Cyanothece sp. PCC 7822] Length = 1199 Score = 163 bits (413), Expect = 8e-38, Method: Composition-based stats. Identities = 74/542 (13%), Positives = 147/542 (27%), Gaps = 81/542 (14%) Query: 19 KLIPLRLGDKRPQRLGKWEEQLLSSE-----------------KIDKLPACGFGFVCGVG 61 L+PL +K+P W+ + ++ +I K+ GFG + G Sbjct: 23 ALVPLN-NNKQPLG-DGWQNRPYTATQLIEAITTGGVAVPIKGEIKKIQLQGFGVITGTS 80 Query: 62 ------EQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKK 115 L A D+D L T + + F + ++ Sbjct: 81 LTREHETYTLMAVDLDGASATNKMLELSGSNPLPPTVAFTSTRPGRCQYLFLVPEKLKNL 140 Query: 116 KKTTESTQG---------HLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLS 166 +T + G +++ V T +Y W ++ + L Sbjct: 141 IRTKKIKTGVVGDDGKPEQIELRYSNLQSVLPPSVHPTTGQYHWVEGCAIDEI-EIALAP 199 Query: 167 EEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSH 226 + +E +F I + T T N +Q+++ + F + Sbjct: 200 DWILEQMF-----IDKSSPSSPALNLSYTTHTYNRGKQWSDIDFAISYLNALSPFRADDY 254 Query: 227 DEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRST 286 D+W+ V MA+H WS+ S Y + KW +F T Sbjct: 255 DDWVAVGMALHSVDDS---LLTEWDNWSRSSSKYKPGDCEKKWKSFSRGGGVQLG----T 307 Query: 287 FTSLFYHHGKLIPKG--LLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIW 344 L G P+ LAS + ++ N Sbjct: 308 LAHLAKLDGWTFPRKNTSLASPVKKPSSNQSIALTSTD-----------------NETTV 350 Query: 345 SLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKS 404 + + + L+S+ + V ++ + K+ + + + Sbjct: 351 TGDTLSKSDTPNPQLLSVADTVTAVTAILKLGLKDYEEQNELDLLQSYSTFSKAAYQQLV 410 Query: 405 TAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGE 464 +A +D L+ + + LDL+ L + + Sbjct: 411 SAIRCSEDVTQPSDTDRLNQ---LVNWHNATLDLKKII-----PPLAPVFIHDASVLNID 462 Query: 465 PSQEFLDLVSGYFESEEVM-DYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKY 523 P + + D A + + G G+GK+ +I Sbjct: 463 PISLWQYFLPTVLSLAGKRLDLDIE------SHRIPAIAWTCLVGESGTGKTRAEGVILA 516 Query: 524 AF 525 Sbjct: 517 PL 518 >gi|331700427|ref|YP_004397386.1| phage/plasmid primase, P4 family [Lactobacillus buchneri NRRL B-30929] gi|329127770|gb|AEB72323.1| phage/plasmid primase, P4 family [Lactobacillus buchneri NRRL B-30929] Length = 484 Score = 163 bits (413), Expect = 9e-38, Method: Composition-based stats. Identities = 50/361 (13%), Positives = 113/361 (31%), Gaps = 25/361 (6%) Query: 390 DYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKE 449 R + + A+ + I + +GI +L + + + + Sbjct: 88 IKRLIGMMYAPFNEREAEEVIYHLINWAKVKEPTVDRYLIPVANGIWNLHRHELIPFSPD 147 Query: 450 LYITKSTGTPF-----VEGEPSQEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRF 503 T T + ++ E++ + +L G ++ Sbjct: 148 YVFTTKIATKYVNNPVPPNINGWTVDGWLNEIANHDPEIVKLLWEIINDSLNGNFTRKKA 207 Query: 504 IHIRGV-GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIV 562 I + G +GK T LI+ G V + + + + L L+G + Sbjct: 208 IFLYSEKGNTGKGTFQQLIQNLVGKSNVGSLKVNQFDE---------RFKLALLVGKTVC 258 Query: 563 IISETNENDEI-NAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDD 621 I +T + I +++ + GD +T + ++ T N N Sbjct: 259 IGDDTPPDIYIKDSSSFNSVVTGDLVTIEYKGQDGFTT-TLRCTVIQSCNGLPNFHNK-G 316 Query: 622 AWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLK 681 RR I++PF+ + ++ + + + ++ L +A D+P V + Sbjct: 317 GTMRRMIIVPFNNHFEGSNDNWDIRDDYMSRQDVLQYVL--YRALQLDFKKFDVPTVSKQ 374 Query: 682 AKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLN 741 A E + D + + E ++ + + Y +Y + K + Sbjct: 375 ALSEFEKDNDPLIGF-REFFLSLEVDKIPTYYVYEYYKKYCQING---LKALGQNKFIRR 430 Query: 742 L 742 L Sbjct: 431 L 431 >gi|218442267|ref|YP_002380595.1| primase [Cyanothece sp. PCC 7424] gi|218175408|gb|ACK74138.1| Primase 2 [Cyanothece sp. PCC 7424] Length = 1287 Score = 163 bits (413), Expect = 9e-38, Method: Composition-based stats. Identities = 62/494 (12%), Positives = 141/494 (28%), Gaps = 67/494 (13%) Query: 17 GFKLIPLRLGDKRPQRLGKWEEQLLSSE-----------------KIDKLPACGFGFVCG 59 G L + L +K+ W+ + ++ +I K+ GFG + G Sbjct: 37 GLDLALVPLNNKKQPLGDGWQNRPFTATQLIEAIHNGGVEVPIKGEIKKIQPQGFGVITG 96 Query: 60 ------VGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGI 113 G L A D+D + L T + F + ++ Sbjct: 97 NSLTTQQGTYTLMAVDLDGASATDKMLELSRSKPLPPTVAFTSTLPGRCQYLFLVPEKFK 156 Query: 114 KKKKTTESTQG---------HLDILGCGQYFVAYNI-HPKTKKEYTWTTPPHRFKVEDTP 163 +T + G +++ V HP T + Y W ++ + Sbjct: 157 NLIRTKKIKTGVVGDDGKPEQIELRYSNLQSVLPPSVHPDTGQ-YHWLEGCAIDEL-EIA 214 Query: 164 LLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYN 223 L + +E + + + L + S NN+N+Q+++ + F Sbjct: 215 LAPDWILEQML---IDKSPLLPLSPPPRLSSTAQKNNSNKQWSDIDFAISYLNALSSFRA 271 Query: 224 GSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKK 283 +D+W+ V MA+H WS+ + Y + KW +F Sbjct: 272 DDYDDWLAVGMALHSVDDS---LLSEWDNWSRTSNKYKPGDCEKKWKSFSRGGGVK---- 324 Query: 284 RSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYI 343 +L + R + + + + T+ K Sbjct: 325 ---LGTLAHMAKLDGWT--FPKRKNTPLSSPVKTPSSNQSVSLTSTDKK---------IT 370 Query: 344 WSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAK 403 + K + + L+S+ + V ++ + K+ + + + + + + Sbjct: 371 VTGDTSKRSDTSNPQLLSLADTVTAVTAILKLGLKDYEEQNEL-DLLQSYSTLSKTAYQQ 429 Query: 404 STAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEG 463 + + D ++ + + LD + L + Sbjct: 430 LVRTIRCSLDEIQLGDT--DKFNQLVNWHNATLDFKKVL-----PPLAPAFIHDASVLNI 482 Query: 464 EPSQEFLDLVSGYF 477 +P + + Sbjct: 483 DPISLWQYFLPTVL 496 >gi|319936296|ref|ZP_08010714.1| hypothetical protein HMPREF9488_01547 [Coprobacillus sp. 29_1] gi|319808672|gb|EFW05216.1| hypothetical protein HMPREF9488_01547 [Coprobacillus sp. 29_1] Length = 487 Score = 163 bits (412), Expect = 9e-38, Method: Composition-based stats. Identities = 56/416 (13%), Positives = 127/416 (30%), Gaps = 36/416 (8%) Query: 329 DTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFD----------LSEEPEDNNK 378 + K + W + K + + + ++E + + + Sbjct: 40 EVKRKLLSMDHLDKTWIDLVIKQISKAPSEYMIIEEMIRKYKIMFVDGLGIYIYSGKVWE 99 Query: 379 NSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDL 438 + + S+A S + L+A + +LL Q+ L+L Sbjct: 100 KKSDNYMLKVIGKQMGKWKIGSRASSVLKQLKADCYEEVQFNLLP----VFNFQNCTLEL 155 Query: 439 ETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFES-EEVMDYFTRCVGMALLGG 497 TG+ + + + + + ++ V + EE + G L+ Sbjct: 156 PTGRTHEHSADDLCSIMMEYDYNPQATYSDWHQFVMDICDDNEERYERLQMMCGYVLMND 215 Query: 498 NKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLM 557 Q+ + G G +GKS +N+I+ F V + + LI+L Sbjct: 216 CHLQKSFMLYGEGANGKSVFLNIIEQVFNKNNVSYLQL---------DGLGDKFQLIQLT 266 Query: 558 GSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVR 617 + + I +ET + A K++ G+ ++A + + + N+ + + Sbjct: 267 DTLLNISTETKASTNGGEANFKKVVVGETVSACYKNKD-FYKFKPRAKLIFALNEIPYSK 325 Query: 618 NPDDAWWRRYIVIPFDKPIANRDA--------SFAQKLETKYTLEAKKWFLKGVKAYISK 669 + + RR + F + +K K W +G K Sbjct: 326 EINYGFVRRLSYVKFVNQYVDEPKGEHQKKVNRNLEKRLIKNLSGIFNWCYEGYKKLCVL 385 Query: 670 GLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQE 725 DI + + K+ + ++ D N + + Y + + Sbjct: 386 DRFPDIQDDH-EMKDLFYDISSPIYSFFKDM--KPLNERTLTRDIYSIYITWCKDN 438 >gi|329117177|ref|ZP_08245894.1| phage/plasmid primase, P4 family, C-terminal domain protein [Streptococcus parauberis NCFD 2020] gi|326907582|gb|EGE54496.1| phage/plasmid primase, P4 family, C-terminal domain protein [Streptococcus parauberis NCFD 2020] Length = 480 Score = 163 bits (412), Expect = 1e-37, Method: Composition-based stats. Identities = 42/284 (14%), Positives = 89/284 (31%), Gaps = 20/284 (7%) Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ------EFLDLVSGY- 476 ++ ++G+ +++ + IT TPF +F Sbjct: 118 QEYYYIPVKNGVYNIKNQHLEPFDPKFIITSKITTPFNPEAKKPILGGWFDFDKWFESLA 177 Query: 477 FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEAS 536 EV+ + + A+ ++ + + G G +GK T L++ G + + N + Sbjct: 178 CNDSEVVTLLWQIMNEAINPNRTRKKMVILTGDGNNGKGTFQALLENLIGKENISNLKPD 237 Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNT 596 + + L G I + + + + + GD + T Sbjct: 238 HFTKEFYTSS---------LEGKTCNIGDDISNKYLDEVSDLMSIVSGDRIQVNRKGKET 288 Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAK 656 + E+ N RN + W+RR ++PF+ K + Sbjct: 289 F-EATYRLLCIFSGNDIPRARNKTNGWYRRLCIVPFNADFNGNKERPEIKDKFIKNKTLL 347 Query: 657 KWFLKGVKAYISKGL-DVDIPEVCLKAKEEERQGTDTYQAWIDD 699 +W L K K P+ K E ++ D ++ + Sbjct: 348 EWIL--FKILTMKDFDKFIEPKAVTKMLNEYKRDNDYILTYVTE 389 >gi|160944666|ref|ZP_02091893.1| hypothetical protein FAEPRAM212_02180 [Faecalibacterium prausnitzii M21/2] gi|158443850|gb|EDP20854.1| hypothetical protein FAEPRAM212_02180 [Faecalibacterium prausnitzii M21/2] Length = 437 Score = 163 bits (412), Expect = 1e-37, Method: Composition-based stats. Identities = 53/393 (13%), Positives = 120/393 (30%), Gaps = 27/393 (6%) Query: 377 NKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGIL 436 + + + + + Q+++ + S+ + + + ++G Sbjct: 47 EDEAPLKKEIYEQVRYYATTSVARRIEHIVQAIK----LACASEPPEIQTDRIHVRNGTY 102 Query: 437 DLETGQKVKPTKEL-YITKSTGTPFVEGEPSQ-EFLDLVSGYFESEEVMDYFTRCVGMAL 494 ++ T E Y +V P+ +L ++ EE + +G L Sbjct: 103 FVDGH----FTPEKEYCMNRLPISYVPEAPAPTRWLQFLNELL-YEEDIPALQEYIGYCL 157 Query: 495 LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLI 554 L KAQ+ + + G GG GKS + +++ FGN + + + Sbjct: 158 LPVTKAQKMLLMVGKGGEGKSRIGLILRELFGNS---------MYTGSLQKVETNRFARA 208 Query: 555 RLMGSRIVIISETNENDEINAAKIKQMTG-GDCMTARLNYGNTYSESPASFTPFIVPNKH 613 L +++ + IK + D + + + Sbjct: 209 GLEYKLLLVDDDMKTEALPQTNNIKTLVTLEDKIDIERKGQQSVQGTLYVRFACFGNGSL 268 Query: 614 LFVRNPDDAWWRRYIVIPFDKPIANR-DASFAQKLETKYTLEAKKWFLKGVKAYISKGLD 672 + + + ++RR +++ + R D F W L+G+ I Sbjct: 269 HALYDKSNGFYRRQLLLTTKEKPLGRVDDPFLIDKMRNEKEGILLWALEGLHRLIQNNYQ 328 Query: 673 VDIPEVCLKAKEEERQGTDTYQAWI--DDCCDIGENLWEESHSLAKSYSEYREQELNYDR 730 I E +E + + ++ + +I + +S K Y + L Sbjct: 329 FTISERTAANLKEAMEQGNNILGFLKSEGYFEIRKGAKCKSTDFYKVYERWCLDNLE--- 385 Query: 731 KRISTRTVTLNLKQKGFIGGIKREKIEKEWKSK 763 K ++ T +LK GI + Sbjct: 386 KPLAASTFIHHLKDNQKSLGIVYDDKCIGTNRG 418 >gi|139474571|ref|YP_001129287.1| phage replication protein [Streptococcus pyogenes str. Manfredo] gi|134272818|emb|CAM31096.1| putative phage replication protein [Streptococcus pyogenes str. Manfredo] Length = 500 Score = 163 bits (412), Expect = 1e-37, Method: Composition-based stats. Identities = 49/286 (17%), Positives = 94/286 (32%), Gaps = 19/286 (6%) Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE------FLDLVSGY-FES 479 + Q+GI+DL T + + + + IT T + + F D ++ Sbjct: 141 YLIPVQNGIIDLRTKELLPFSPKYVITSKISTAYHAPKRVPTDREGKTFDDWLNSIACND 200 Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539 E++ F + + A+ + +F G G +GK T + G V + + Sbjct: 201 SELVTLFWQIILEAINPNHTRNKFAIFYGDGNNGKGTFQRFLINLIGESNVSALKPAQFA 260 Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599 + +L L+G I E N + + +T GD + G E Sbjct: 261 EK---------HNLETLVGKVCNIGDEAPNEYLKNPSDLMSITSGDTVLVNPK-GRPAFE 310 Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWF 659 + N N W+RR +++PF+ K + E ++ Sbjct: 311 ATFKLFNIFSGNYIPNGGNKTKGWYRRIMIVPFNADFNGEKEKPWIKNDFLANKEVLEYA 370 Query: 660 LKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID-DCCDIG 704 L P+ EE ++ D +W+ + + G Sbjct: 371 LYKAIN-QKPFTHFIEPQAVKGLLEEYQEDNDYLLSWVKHEYMERG 415 >gi|117926195|ref|YP_866812.1| hypothetical protein Mmc1_2915 [Magnetococcus sp. MC-1] gi|117609951|gb|ABK45406.1| conserved hypothetical protein [Magnetococcus sp. MC-1] Length = 765 Score = 163 bits (411), Expect = 1e-37, Method: Composition-based stats. Identities = 65/298 (21%), Positives = 107/298 (35%), Gaps = 36/298 (12%) Query: 10 AKQAIHNGFKLIPLRLGDKRP--QRLGKWE------------EQLLSSEKIDKLPACGFG 55 ++ + GF+++P+ G K P GKW L + + P G G Sbjct: 10 GEKLVAAGFQILPIAPGKKYPGSYHQGKWSPYKGWNKHAERATTALELQVWKQWPGAGIG 69 Query: 56 FVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTP-IVRIGQKPKILIPFRMNKEGIK 114 G + DID DE + + L G VRIG+ PK L+ +R + Sbjct: 70 VPGGQ----VAGIDIDVADESVSLQLEQLAMRLFGETKAVRIGRAPKRLLVYRTDTPFKG 125 Query: 115 KKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTP-PHRFKVEDTPLLSEEDVEYL 173 K + L++L GQ FVAY IHP T Y W K+ED P+++E+ + Sbjct: 126 IK------KHPLEVLCLGQQFVAYAIHPDTGHPYQWINQELTDLKIEDLPVITEQQAHHF 179 Query: 174 FKFFQEITVPLVKDKKS-------IIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSH 226 + + ++ + S T ++ Q E A F + + Sbjct: 180 IEQGLALLPVEMRPARLEARGDSCNSYSAISTVISHSQAGTYEAVADAMRF-ISNADLPY 238 Query: 227 DEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKR 284 D+W+ + MA+ + + WS + + W F IG Sbjct: 239 DDWMRIGMAIKGALGDAGEVL--FAEWSASSAKNIAQETFKAWSGFKPTIIGAGTIYH 294 >gi|294783579|ref|ZP_06748903.1| DNA primase-phage associated [Fusobacterium sp. 1_1_41FAA] gi|294480457|gb|EFG28234.1| DNA primase-phage associated [Fusobacterium sp. 1_1_41FAA] Length = 639 Score = 163 bits (411), Expect = 1e-37, Method: Composition-based stats. Identities = 70/503 (13%), Positives = 161/503 (32%), Gaps = 40/503 (7%) Query: 282 KKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNV 341 + F+ + K + + + NK + T + + + N Sbjct: 155 RNSEIFSHIKILKDKKVSDTDIGRIVNFINNKVFKTPLPIDELKATIGSAMTGESNNNGK 214 Query: 342 Y----IWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFN----TDYRR 393 I K+ + + + K D+ + + + + N R Sbjct: 215 PSFYTIDEKGKQKLNLTAIEMYMREKLDIREYRNILFYIKDDKRYEKDTLNGTNIFREIR 274 Query: 394 QNVEENSKAKSTAQSLEAGSIFSITSD-LLDSSSRF-LGEQDGILDLETGQKVKPTKELY 451 + +E+ + +T Q E + D + ++ + ++G L Q +K ++++ Sbjct: 275 KTLEKENIVLNTKQDSEILHLIKTDFRIEEDKNKKYPIAFRNG-WCLYRDQFIK-QEKIF 332 Query: 452 ITKSTGTPFVEGEPSQEFLDLVSGYFESEE-VMDYFTRCVGMALLGGNKAQRFIHIR-GV 509 + + ++ + + + +E ++ F +G L+ G Sbjct: 333 TPFYMDVDYDPSANDENVINFIKWFCKDDEGLITLFEEILGHILMLERFPHHIFFFVAGK 392 Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569 G +GKST++N++ + + + L+G + + + ++ Sbjct: 393 GKNGKSTMLNMLNN-WTDGLNSTTALDQFEKETYA---------YDLIGKIVNLGDDIDD 442 Query: 570 NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIV 629 + IK + GG + AR Y + ++ T N ++ RR + Sbjct: 443 TYIEKSRVIKVIAGGSKIKARALYTMP-VDFKSTATLIFSCNNMPTFKDKSGGMARRVVC 501 Query: 630 IPFDKPIA--NRDASFAQKLETK-YTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEE 686 P + + D KL T +KG+K I+ G ++ I E E Sbjct: 502 FPCNSNVEYGKIDLDLDDKLTTDSAKSTLLNLAIKGMKRIIANGGELTITETSKALTERY 561 Query: 687 RQGTDTYQAWIDD------CCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTL 740 D+ + + C D+ N + + L Y + ++ T++ Sbjct: 562 LIENDSIAMFFSETDVNKLCDDMENNTFTK---LYSLYQMFCDENG---YTPSGKNTLSK 615 Query: 741 NLKQKGFIGGIKREKIEKEWKSK 763 L + GF + K K Sbjct: 616 KLDEFGFESYTGAGNVRKIRPKK 638 >gi|299883481|ref|YP_003739032.1| hypothetical protein HacjB3_19528 [Halalkalicoccus jeotgali B3] gi|299126907|gb|ADJ17241.1| hypothetical protein HacjB3_19528 [Halalkalicoccus jeotgali B3] Length = 596 Score = 163 bits (411), Expect = 1e-37, Method: Composition-based stats. Identities = 77/531 (14%), Positives = 187/531 (35%), Gaps = 32/531 (6%) Query: 231 PVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSL 290 ++ +R + +++ + + D+ TF + T S Sbjct: 17 ESGNLTYNNSRFKGEPVDLSEDSEGEENDDDDGTM-----TFATNTEDIDDNESETEKSD 71 Query: 291 FYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYK---KDKNNVYIWSLT 347 + + + + ++ D+ +W + +N+ + + Sbjct: 72 EKLFQRRLERKERIDKQKKSHRTENKPHDSHDKTSLEPDSDSWSEILAMYENDDFGDTKK 131 Query: 348 LDKITASIMNFLVSMK-----EDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKA 402 D A + +K E+VF +E E K + + + R + + +N Sbjct: 132 ADYRAAEKLVEEYHIKTLESSEEVFW-YDESEGTYKENGGKKVDKVLNDRLKWLCDNRTK 190 Query: 403 KSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDL---ETGQKVKPTKELYITKSTGTP 459 L++ S + + + F+ ++G+L+L + + + E K+ TP Sbjct: 191 GEVKSRLQSMSWV-MEDTVFNPPEGFICVKNGVLNLTDPDNPELEDHSPEYGFRKNMDTP 249 Query: 460 FVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMN 519 ++EG +Q F+D + + +++ + G+AL + + + G +GK T ++ Sbjct: 250 YIEGAENQLFVDSLEETVQDKDL-EKLQEYTGIALEDWEQPTKMAVLIGPQNAGKGTYLH 308 Query: 520 LIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIK 579 I+ FG V ++ +R L + I +E + + +K Sbjct: 309 AIESIFGKGNVAAEPIKELADSRWSTNS--------LKDRPLNIANELSTEKVNHQEAVK 360 Query: 580 QMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR 639 +TGG + G++ E + N+ + D ++ R++ + F + + Sbjct: 361 TLTGGGDSKRAEDKGDSVYEFIPTSNHLFATNQLPEMPGADGIFYNRFLFVDFPQTVPKE 420 Query: 640 DAS--FAQKLETKY--TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAK-EEERQGTDTYQ 694 D +K+ W ++G S+G E+ K + + + Sbjct: 421 DRDASLDEKMVESEQRRAGILNWLIEGYARIKSRGKTGYTNELSEADKISKWHSYGSSIE 480 Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK 745 +I+ C + E + +++ + Y Y + + + T+T LK+ Sbjct: 481 RFIETCIETDEAVEDDARTKKDLYQTYLRMSKDANLPCKAQATLTGKLKKL 531 >gi|146319168|ref|YP_001198880.1| virulence-associated protein E [Streptococcus suis 05ZYH33] gi|146321372|ref|YP_001201083.1| virulence-associated protein E [Streptococcus suis 98HAH33] gi|253752213|ref|YP_003025354.1| phage primase [Streptococcus suis SC84] gi|253754039|ref|YP_003027180.1| phage primase [Streptococcus suis P1/7] gi|253755973|ref|YP_003029113.1| phage primase [Streptococcus suis BM407] gi|145689974|gb|ABP90480.1| Virulence-associated protein E [Streptococcus suis 05ZYH33] gi|145692178|gb|ABP92683.1| Virulence-associated protein E [Streptococcus suis 98HAH33] gi|251816502|emb|CAZ52138.1| putative phage primase [Streptococcus suis SC84] gi|251818437|emb|CAZ56266.1| putative phage primase [Streptococcus suis BM407] gi|251820285|emb|CAR46774.1| putative phage primase [Streptococcus suis P1/7] gi|292558805|gb|ADE31806.1| Virulence-associated protein E [Streptococcus suis GZ1] gi|319758602|gb|ADV70544.1| virulence-associated protein E [Streptococcus suis JS14] Length = 510 Score = 163 bits (411), Expect = 1e-37, Method: Composition-based stats. Identities = 58/323 (17%), Positives = 114/323 (35%), Gaps = 26/323 (8%) Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ-----EFLDLVSGYF 477 +++ + +GI + +T T T T + S EF + F Sbjct: 144 ENAPHLIIVGNGIYNRKTRTLEPFTDTRVFTHKIQTNYNPHAQSPTIKGWEFNGWLLDLF 203 Query: 478 -ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEAS 536 +E+ + + + G + G GG+GK TL L G Q + + + + Sbjct: 204 NGDKELYQLSLQLLNAVVRGE-SYAKMFWFVGEGGTGKGTLQELFINLIGRQNIASIKIT 262 Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI-NAAKIKQMTGGDCMTARLNYGN 595 D+ N +L + +G + +I + I + +K+ + GGD +T + Sbjct: 263 DLDVNN-------RFTLAQAIGKQAIIGDDVQAGAVIRDTSKLFSLVGGDTVTVEKKGKD 315 Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655 YS + N +R A RR +++PF+K + + A K + Sbjct: 316 AYSTFIKTV-VIQSTNTLPKIRGDYHAIRRRMVILPFNKHFKGK-PNRAIKNDYITRPSV 373 Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD-----CCDIGENLWEE 710 ++ LK V K D P + +E ++ D A+ + N W Sbjct: 374 LEYVLKTVIDLDFK--DFIEPSKSIDLLDEYQETIDPVLAFSQNLFTNLHSTFIPNDWVW 431 Query: 711 SHSLAKSYSEYREQELNYDRKRI 733 +++Y + N+ + Sbjct: 432 W--YFTGFADYHNFQHNFSSQGF 452 >gi|325696225|gb|EGD38116.1| P4 family prophage Sa05 [Streptococcus sanguinis SK160] Length = 479 Score = 163 bits (411), Expect = 2e-37, Method: Composition-based stats. Identities = 54/344 (15%), Positives = 109/344 (31%), Gaps = 23/344 (6%) Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE------FLDLVSGY-FES 479 + Q+GI++LET + + + + IT T + F D ++ Sbjct: 121 NLIPVQNGIINLETKELLPFSPKYVITSKISTAYHAPTQVPRDREGKTFDDWLNSIACND 180 Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539 E++ F + + A+ + +F G G +GK T + G + + + Sbjct: 181 SELVTLFWQIILEAINPNHTRNKFAIFYGDGNNGKGTFQRFLINLIGESNISALKPAQFA 240 Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599 + +L L+G I E N + + +T GD + G E Sbjct: 241 EK---------HNLETLVGKVCNIGDEAPNEYLKNPSDLMSITSGDTVLVNPK-GRPAFE 290 Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI-ANRDASFAQKLETKYTLEAKKW 658 + N N W+RR +++PF+ ++ + + ++ Sbjct: 291 ATFKLFNIFSGNYIPNGGNKTKGWYRRIMIVPFNADFNGEKEKPWIKNEFLANKD-VLEY 349 Query: 659 FLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID-DCCDIG--ENLWEESHSLA 715 L P+ EE ++ D +W+ + + G E L Sbjct: 350 ALYKAIN-QEPFTHFIEPKAVKGLLEEYQEDNDYLLSWVKHEYMEKGWHELDVVPVFILT 408 Query: 716 KSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKE 759 +S Y E T+ Q+ K ++ + Sbjct: 409 RSLKHYAEDMGIPKPNVYGAGKETIRHLQQLTPNHYKLKRARVK 452 >gi|312113986|ref|YP_004011582.1| Primase 2 [Rhodomicrobium vannielii ATCC 17100] gi|311219115|gb|ADP70483.1| Primase 2 [Rhodomicrobium vannielii ATCC 17100] Length = 782 Score = 163 bits (411), Expect = 2e-37, Method: Composition-based stats. Identities = 63/352 (17%), Positives = 117/352 (33%), Gaps = 62/352 (17%) Query: 8 EQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQL-LSSEKIDKLPAC--GFGFVCGVGEQ- 63 E+ K + GF + LR K P W E + +++ KL G G + Sbjct: 3 EEVKPLVEAGFSVHLLRPKSKIPAN-DGWSEAPVYTFDQLRKLYRDGQNVGIRLGKPSKV 61 Query: 64 ---PLYAFDIDSKDEKTANTFKDTFEILHG------TPIVRIGQKPKILIPFRMNKEGIK 114 L+A D+D + + + D + L P V+ G + + ++ + Sbjct: 62 EGLYLHAIDLDIRVPEAKSEALDRLDELISDGDLKELPCVQSGSGGASRHFYFLTEDAFR 121 Query: 115 KKK------------TTESTQGHLDILGCGQYFVAYNI-HPKTKKEYTWTTPPHRFKVED 161 KK E + +++ G G+ V HP T K Y W P + Sbjct: 122 SKKLAHSKHKFTGDDGKEHWEWEIELFGTGKQVVLPPSIHPDTGKAYRWVLQPDLKRG-- 179 Query: 162 TPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEF 221 P +S + ++ L + + N+ T E +L + Sbjct: 180 IPRISADLIDELVG--------------GDESTGFYENSEPLNLTINEARDYLDAIPD-- 223 Query: 222 YNGSHDEWIPVVMAVHHETRGS----SKGKEIARRWSKQGSTYDEENFNYKWDTFDFEE- 276 + D W+ V MA+ HE + E+ WS++G Y+ +W F F+ Sbjct: 224 WADDRDSWVRVGMALKHEFADDKALIKEAWELFDEWSRRGYGYNRAKNLAQWRGFTFDRE 283 Query: 277 -------IGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKK 321 I A R+ + ++ + + K + S++ Sbjct: 284 ELVTMRSIVAEANDRALYETIEELDDEDEERPPAPPS-----AKVLMSMFDD 330 >gi|237739825|ref|ZP_04570306.1| DNA primase [Fusobacterium sp. 2_1_31] gi|229423433|gb|EEO38480.1| DNA primase [Fusobacterium sp. 2_1_31] Length = 685 Score = 162 bits (409), Expect = 2e-37, Method: Composition-based stats. Identities = 57/436 (13%), Positives = 141/436 (32%), Gaps = 36/436 (8%) Query: 353 ASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYR--RQNVEENSKAKSTAQSLE 410 +N ++ + D S DN S + +++ + + + K + + E Sbjct: 263 KLKVNTYKMAQKLINDFSIINIDNFLYSYNGQYYKKCEKEDIERAILRLHKDITMNELKE 322 Query: 411 AGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPS---- 466 + +D ++ +G+ +L+T + +K+ + + Sbjct: 323 VLKKIQLGADKKKEDLNYIALNNGVFNLDTRKLEPYSKDKITMVHMDIIYTDDVDIITGE 382 Query: 467 ---QEFLDLVSGYFESE-EVMDYFTRCVGMALLGG-NKAQRFIHIRGVGGSGKSTLMNLI 521 + + +++ + +G AL N Q+ + I+G +GKS + ++ Sbjct: 383 PTGTIIKNYMLDLVQNDYNLFCVLCEFLGQALYRKENILQKCLIIKGDKSNGKSKFLEIL 442 Query: 522 KYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM 581 FG + V + Q L ++G + I + + +++ IK++ Sbjct: 443 IKFFGTENVSTLDLKRFEQ---------RFDLFSIVGKMVNIGDDISGQYIPDSSNIKKI 493 Query: 582 TGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR-- 639 + + + + + N + A RR ++PF+ Sbjct: 494 ITSEMLPIERKGQDLF-DYKPRIICIFSCNNLPRFDDSTKAVKRRLCILPFENTYRPELN 552 Query: 640 --DASFAQKLETKY-TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAW 696 + ++ T E W + G+ + + ++ EE + D +A+ Sbjct: 553 NINPFIVHEMTTPENLSELFSWSVWGLDRVLRN-HRLTESPKIMELVEEFDKDNDPIRAF 611 Query: 697 IDDC---CDIGENLWEESHS---LAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGG 750 I+D +IG + + Y + K ++ LKQ Sbjct: 612 IEDMAGDTEIGLKGYFNMKDTGIIYTDYQIWCNNNG---YKEMNASNFGKQLKQHIPKLD 668 Query: 751 IKREKIEKEWKSKRII 766 K + + + R + Sbjct: 669 KKPYRNDFQKVKNRYL 684 >gi|19552943|ref|NP_600945.1| ATPase [Corynebacterium glutamicum ATCC 13032] gi|62390620|ref|YP_226022.1| prophage DNA primase [Corynebacterium glutamicum ATCC 13032] gi|41325958|emb|CAF20121.1| PROPHAGE DNA PRIMASE [Corynebacterium glutamicum ATCC 13032] Length = 591 Score = 162 bits (409), Expect = 2e-37, Method: Composition-based stats. Identities = 41/333 (12%), Positives = 113/333 (33%), Gaps = 27/333 (8%) Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF-----------LDL 472 + ++GI + T Q ++E + + + Sbjct: 188 KQRDLIPVKNGIFNYSTKQLEPFSQEFVFLAKSAVNYNPNAQNPVITHPQDGSVWDVESW 247 Query: 473 VSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGV-GGSGKSTLMNLIKYAFGNQYVI 531 ++ + EV++ +G + + G +GK TL+ L++ G + Sbjct: 248 MNDLSDDPEVVNLLWEIIGAIVRPYVSWNKSAWFYSEAGNNGKGTLVELMRNILGAEAYT 307 Query: 532 NAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEIN-AAKIKQMTGGDCMTAR 590 + + SD + L L ++ +++ E + + +A +K + D ++ Sbjct: 308 SIQLSDFSKE---------FHLESLTRAQAILVDENDVGAFLEKSANLKAIVTNDVISIN 358 Query: 591 LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETK 650 + T N V++ ++++RR + +PF+K + + + Sbjct: 359 RKHK-TMLSYQFYGFMVQCINGFPKVKDQSESFFRRQLFVPFEKSFTGAERKYIKDDYMS 417 Query: 651 YTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEE 710 + ++ L + ++ P L +E ++ D +A+ ++ D Sbjct: 418 -RTDVLEYVL--HRVLHMNYDNLSTPAAALAVLDEYKEFVDPVRAFWNEFSDQFVWDLLP 474 Query: 711 SHSLAKSYSEYREQELNYDRKRISTRTVTLNLK 743 L + Y ++ +++ + R+ + Sbjct: 475 LQFLYEFYRKWFDRDSPSGS-VLGKRSFIQKIT 506 >gi|268610888|ref|ZP_06144615.1| primase, putative [Ruminococcus flavefaciens FD-1] Length = 447 Score = 162 bits (409), Expect = 3e-37, Method: Composition-based stats. Identities = 65/454 (14%), Positives = 135/454 (29%), Gaps = 30/454 (6%) Query: 327 TADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFW 386 + K + ++ + ++D+I V D + + Sbjct: 3 DKEKKKEFLENAPKWVMGINSIDEIAYGTEYLKQFPMLCVNDKLFDVDGEVDMKYVSYRI 62 Query: 387 FNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP 446 +++ KS ++++ + L + Q+G LD++ Sbjct: 63 SQDILPYVRNNLSNRVKSLIEAIKLLCY----NSELPLDEFRIHLQNGTLDVDGTFTE-- 116 Query: 447 TKELYITKSTGTPF----VEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQR 502 K+ + + E ++FL + E E ++ +G L+ + Q+ Sbjct: 117 -KKYFCRNRLNVEYKEFIGEAYYPEKFLTFLYDLLE-PEDVETLQEYLGYCLIPSTRGQK 174 Query: 503 FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIV 562 + I G GG GKS + +++ FG +++ L ++ Sbjct: 175 MMFIVGNGGEGKSRIGVVLQSIFGK---------NMLTGSFQRIENDRFFRYNLQDKLLM 225 Query: 563 IISETNENDEINAAKIKQMTGGD-CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDD 621 + + N ++ IK + + + +Y S + + D Sbjct: 226 VDDDMQMNALMSTGYIKNLITAETPVDVEAKGEQSYQAKLYSRFLCFGNGSPKALYDKTD 285 Query: 622 AWWRRYIVIPFDKPIANR-DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCL 680 + RR I++ NR D F + +W G+K I + I Sbjct: 286 GFARRLIILTTKPKSENRIDDPFIADKFIAEKEKIFRWMYDGLKRLIDRKFRFTISNKTK 345 Query: 681 KAKEEERQGTDTYQAWIDDC--CDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738 E ++ DC + L SYS + + + T Sbjct: 346 LNISEALSDNCNINEFLSDCDIVSFNTDFRVTGAELYSSYSVWC---GDNALTALKRDTF 402 Query: 739 TLNLK--QKGFIGGIKREKIEKEWKSKRIIKGLK 770 LK QK ++ R KG+K Sbjct: 403 ISWLKTNQKKLGICYDSNILDDRGNRVRGFKGIK 436 >gi|326381741|ref|ZP_08203435.1| P4 family phage/plasmid primase [Gordonia neofelifaecis NRRL B-59395] gi|326199988|gb|EGD57168.1| P4 family phage/plasmid primase [Gordonia neofelifaecis NRRL B-59395] Length = 706 Score = 162 bits (409), Expect = 3e-37, Method: Composition-based stats. Identities = 50/361 (13%), Positives = 103/361 (28%), Gaps = 57/361 (15%) Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF-------------- 469 + + ++GI+D T V + E G + S Sbjct: 226 TDPDLIATRNGIVDFRTKTSVPFSPEYVFLAKLGVDWNPDAVSPVIPNPKHCLHDDRISC 285 Query: 470 -------------------------LDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFI 504 ++ + EV V + + + Sbjct: 286 TSLCTCSGDHDDPADCTSSCQTWDVESWMADLIDDPEVTTLLWEIVSAVIRPYISWNKAV 345 Query: 505 HIRGV-GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVI 563 G +GK TL+ +I+ G + +D L L+G+ ++ Sbjct: 346 FFYSQQGNNGKGTLLAMIRNLLGRGNYASLPLADF---------GHEFKLEDLVGTSAIL 396 Query: 564 ISETNENDEIN-AAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDA 622 E + I+ AA K + D + + N V++ ++ Sbjct: 397 TDENDVGTYIDKAANFKAIVTNDVIMINRKNRRA-IKHQHYGLMIQCFNDKPTVKDKSES 455 Query: 623 WWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKA 682 RR + I FDK R+ + + ++ L ++A ++ P A Sbjct: 456 LLRRLMFIHFDKSFTGRERKYIKDDYLHRRD-VLEYVL--LRALSMGHYELSEPAAVKAA 512 Query: 683 KEEERQGTDTYQAWIDD-CCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLN 741 +E ++ D A+ + I L + L Y + + + + K + Sbjct: 513 LDEFKEYNDPVLAFWREIRTQITWRL-APAQFLFDMYKSWMVRNM-PNSKALGRYKFYDQ 570 Query: 742 L 742 L Sbjct: 571 L 571 >gi|62860541|gb|AAY16511.1| putative primase [Gordonia terrae phage GTE5] Length = 225 Score = 161 bits (408), Expect = 3e-37, Method: Composition-based stats. Identities = 54/222 (24%), Positives = 101/222 (45%), Gaps = 4/222 (1%) Query: 551 PSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVP 610 P +I R+V SE + + +++ IK++TGGD +TAR Y N + FTP I Sbjct: 2 PEIIAAFPRRVVFASEVGQRNRLHSDVIKRLTGGDSVTARALYSNVMVQRTPMFTPIIAT 61 Query: 611 NKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTL-EAKKWFLKGVKAYISK 669 N + + D A WRR +V+PFD+ + +A E L W + G+ Y+ + Sbjct: 62 NSMPTIEDGDAALWRRLLVLPFDRQVPLSNADVTPIREVPEALRAVLSWLVDGLLDYLLE 121 Query: 670 GLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYD 729 GLD +P K + GT T+Q + + ++ + + + Y ++ ++E + Sbjct: 122 GLDTALPTEVTKRRAMFIAGTSTFQMFTAEMLTDDDDGKVVALKVFELYRQWAKRE---E 178 Query: 730 RKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771 ++ R +++ G+ + + S+ I G +L Sbjct: 179 ADPLTRREFYSRMRENGYATKKATVRRAGKVTSETIFTGFRL 220 >gi|227903638|ref|ZP_04021443.1| DNA primase [Lactobacillus acidophilus ATCC 4796] gi|227868525|gb|EEJ75946.1| DNA primase [Lactobacillus acidophilus ATCC 4796] Length = 498 Score = 161 bits (408), Expect = 3e-37, Method: Composition-based stats. Identities = 55/408 (13%), Positives = 137/408 (33%), Gaps = 27/408 (6%) Query: 379 NSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLL--DSSSRFLGEQDGIL 436 N++S + ++ + + + E S I S L + +GI Sbjct: 88 NTESGIYEKDSLLIEELINTVEPQITERNIKEVKSKLRIESKRLFLTNDPNLYALGNGIF 147 Query: 437 DLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEV-------MDYFTRC 489 D + + + + + T + F + + +E++ + + Sbjct: 148 DAKKHKLLAYSPKCVFTSKIAVNYNPNAQEPRFDNWSFSKWINEDIAENKTDKIKLIWQT 207 Query: 490 VGMALLGGNKAQRFIHIRGV--GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAG 547 + + + + G +GK T L++ G + + + Sbjct: 208 IKAVVNSNYSYHSAVFLIDSKKGSAGKGTFEALLENIAGPNNYATIKLNQFEKA------ 261 Query: 548 KANPSLIRLMGSRIVIISETNENDEINAAK-IKQMTGGDCMTARLNYGNTYSESPASFTP 606 P L ++ +VI + + N +++++ K + GD + + YS + Sbjct: 262 ---PILATIVNKPLVIGDDNDPNRAVDSSENFKSASTGDPIVINDKFEKAYS-YKPTCLI 317 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 N ++ DA +RR VI F+K + K E E +W +K Sbjct: 318 VQSLNALPVFKDNTDATYRRIRVIKFNKKYIENAKNRRVKDEYISNKELLEWIVKKAIDV 377 Query: 667 ISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQEL 726 G + + + +E + +D++ + +D N + ++Y ++ E Sbjct: 378 KIDG-VMIRTQESNEILKENQIDSDSFLQFTNDIIVPTTNGYRFKDDTYQAYKKWFEITG 436 Query: 727 NYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPA 774 + + R +++ G+K+ + + + + ++LK Sbjct: 437 -HQFGLETYRGFNKRMRE---DIGLKQSRKMRNGRKMDVWLNIQLKTD 480 >gi|58337070|ref|YP_193655.1| DNA primase [Lactobacillus acidophilus NCFM] gi|58254387|gb|AAV42624.1| DNA primase [Lactobacillus acidophilus NCFM] Length = 500 Score = 161 bits (408), Expect = 3e-37, Method: Composition-based stats. Identities = 55/408 (13%), Positives = 137/408 (33%), Gaps = 27/408 (6%) Query: 379 NSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLL--DSSSRFLGEQDGIL 436 N++S + ++ + + + E S I S L + +GI Sbjct: 90 NTESGIYEKDSLLIEELINTVEPQITERNIKEVKSKLRIESKRLFLTNDPNLYALGNGIF 149 Query: 437 DLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEV-------MDYFTRC 489 D + + + + + T + F + + +E++ + + Sbjct: 150 DAKKHKLLAYSPKCVFTSKIAVNYNPNAQEPRFDNWSFSKWINEDIAENKTDKIKLIWQT 209 Query: 490 VGMALLGGNKAQRFIHIRGV--GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAG 547 + + + + G +GK T L++ G + + + Sbjct: 210 IKAVVNSNYSYHSAVFLIDSKKGSAGKGTFEALLENIAGPNNYATIKLNQFEKA------ 263 Query: 548 KANPSLIRLMGSRIVIISETNENDEINAAK-IKQMTGGDCMTARLNYGNTYSESPASFTP 606 P L ++ +VI + + N +++++ K + GD + + YS + Sbjct: 264 ---PILATIVNKPLVIGDDNDPNRAVDSSENFKSASTGDPIVINDKFEKAYS-YKPTCLI 319 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 N ++ DA +RR VI F+K + K E E +W +K Sbjct: 320 VQSLNALPVFKDNTDATYRRIRVIKFNKKYIENAKNRRVKDEYISNKELLEWIVKKAIDV 379 Query: 667 ISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQEL 726 G + + + +E + +D++ + +D N + ++Y ++ E Sbjct: 380 KIDG-VMIRTQESNEILKENQIDSDSFLQFTNDIIVPTTNGYRFKDDTYQAYKKWFEITG 438 Query: 727 NYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPA 774 + + R +++ G+K+ + + + + ++LK Sbjct: 439 -HQFGLETYRGFNKRMRE---DIGLKQSRKMRNGRKMDVWLNIQLKTD 482 >gi|223932863|ref|ZP_03624859.1| phage/plasmid primase, P4 family [Streptococcus suis 89/1591] gi|223898444|gb|EEF64809.1| phage/plasmid primase, P4 family [Streptococcus suis 89/1591] Length = 480 Score = 161 bits (407), Expect = 4e-37, Method: Composition-based stats. Identities = 57/341 (16%), Positives = 109/341 (31%), Gaps = 22/341 (6%) Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE------FLDLVSGY-FES 479 + Q+GI+DL+T + + + + IT T + F + ++ Sbjct: 121 NLIPVQNGIIDLKTKELLPFSPKYVITSKISTAYHAPTTVPTDREGNTFDNWLNSIACND 180 Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539 E++ F + + A+ + +F G G +GK T + G + + + Sbjct: 181 SELVTLFWQIILEAINPNHTRNKFAIFYGDGNNGKGTFQRFLINLIGESNISALKPAQFA 240 Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599 + +L L+G I E N + + +T GD + G E Sbjct: 241 EK---------HNLETLVGKVCNIGDEAPNEYLKNPSDLMSITSGDTVLVNPK-GRPAFE 290 Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWF 659 + N N W+RR +++PF+ K E + ++ Sbjct: 291 ATFKLFNIFSGNYIPNGGNKTKGWYRRIMIVPFNADFNGEKEKPWIKNEFLANQKVLEYA 350 Query: 660 LKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWI-DDCCDIG--ENLWEESHSLAK 716 L P+ EE ++ D +W+ ++ + G E L + Sbjct: 351 LYKAIN-QEPFTHFIEPQAAKGLLEEYQEDNDYLLSWVKNEYMEKGWHELEVVPVFILTR 409 Query: 717 SYSEYREQELNYDRKRISTRTVTLN-LKQKGFIGGIKREKI 756 S Y E T+ L+Q R+K Sbjct: 410 SLKHYAEDMGISKPNVYGAGKETIRHLQQLTPNRYSLRKKR 450 >gi|21324508|dbj|BAB99132.1| Predicted ATPase [Corynebacterium glutamicum ATCC 13032] Length = 550 Score = 161 bits (407), Expect = 4e-37, Method: Composition-based stats. Identities = 41/333 (12%), Positives = 113/333 (33%), Gaps = 27/333 (8%) Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF-----------LDL 472 + ++GI + T Q ++E + + + Sbjct: 147 KQRDLIPVKNGIFNYSTKQLEPFSQEFVFLAKSAVNYNPNAQNPVITHPQDGSVWDVESW 206 Query: 473 VSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGV-GGSGKSTLMNLIKYAFGNQYVI 531 ++ + EV++ +G + + G +GK TL+ L++ G + Sbjct: 207 MNDLSDDPEVVNLLWEIIGAIVRPYVSWNKSAWFYSEAGNNGKGTLVELMRNILGAEAYT 266 Query: 532 NAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEIN-AAKIKQMTGGDCMTAR 590 + + SD + L L ++ +++ E + + +A +K + D ++ Sbjct: 267 SIQLSDFSKE---------FHLESLTRAQAILVDENDVGAFLEKSANLKAIVTNDVISIN 317 Query: 591 LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETK 650 + T N V++ ++++RR + +PF+K + + + Sbjct: 318 RKHK-TMLSYQFYGFMVQCINGFPKVKDQSESFFRRQLFVPFEKSFTGAERKYIKDDYMS 376 Query: 651 YTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEE 710 + ++ L + ++ P L +E ++ D +A+ ++ D Sbjct: 377 -RTDVLEYVL--HRVLHMNYDNLSTPAAALAVLDEYKEFVDPVRAFWNEFSDQFVWDLLP 433 Query: 711 SHSLAKSYSEYREQELNYDRKRISTRTVTLNLK 743 L + Y ++ +++ + R+ + Sbjct: 434 LQFLYEFYRKWFDRDSPSGS-VLGKRSFIQKIT 465 >gi|169834274|ref|YP_001693718.1| prophage Sa05, P4 family DNA primase [Streptococcus pneumoniae Hungary19A-6] gi|168996776|gb|ACA37388.1| prophage Sa05, DNA primase, P4 family [Streptococcus pneumoniae Hungary19A-6] Length = 489 Score = 161 bits (407), Expect = 4e-37, Method: Composition-based stats. Identities = 49/286 (17%), Positives = 95/286 (33%), Gaps = 19/286 (6%) Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE------FLDLVSGY-FES 479 + Q+GI++LET + + + + IT T + + F D ++ Sbjct: 130 NLIPVQNGIINLETKELLPFSPKYVITSKISTAYHAPKRVPTDREGKTFDDWLNSIACND 189 Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539 E++ F + + A+ + +F G G +GK T + G + + + Sbjct: 190 SELVTLFWQIILEAINPNHTRNKFAIFYGDGNNGKGTFQRFLINLIGESNISALKPAQFA 249 Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599 + +L L+G I E N + + +T GD + G E Sbjct: 250 EK---------HNLETLVGKVCNIGDEAPNEYLKNPSDLMSITSGDTVLVNPK-GRPAFE 299 Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWF 659 + N N W+RR +++PF+ K E E ++ Sbjct: 300 ATFKLFNIFSGNYIPNGGNKTKGWYRRIMIVPFNADFNGEKEKPWIKNEFLANKEVLEYA 359 Query: 660 LKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID-DCCDIG 704 L P+ EE ++ D +W+ + + G Sbjct: 360 LYKAIN-QEPFTHFIEPKAVKGLLEEYQEDNDYLLSWVKHEYMEKG 404 >gi|299782824|gb|ADJ40822.1| DNA primase [Lactobacillus fermentum CECT 5716] Length = 522 Score = 160 bits (405), Expect = 6e-37, Method: Composition-based stats. Identities = 68/503 (13%), Positives = 158/503 (31%), Gaps = 47/503 (9%) Query: 309 DAYNKAMFS---IYKKGHFLYTADTKAWYKKDKNN-VYIWSLTLDKITASIMNFLVSMKE 364 D K Y+K+ V+ T T + +++ + Sbjct: 15 DEMVKRRHDAQPKSFDEQLELLTAWGRQYRKENTRTVHHQDGTESVTTKRMPARMIADRI 74 Query: 365 DVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSD---L 421 + + + ++ +S R ++ + +LE ++ L Sbjct: 75 EAVASIAKLGETDRELESAPLVLYVPDRGIYTHSTARVRRMILALEPACTIKARNEVEWL 134 Query: 422 LD---------SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ----- 467 LD SS + +GI + ++G+ T E+ T T + Sbjct: 135 LDGEATAKAPESSPSLIPVGNGIYNTDSGEFQPFTPEIVFTSKIATNYNPNATEPSFNGW 194 Query: 468 EFLDLVSGY-FESEEVMDYFTRCVGMALLGGNKAQRFIHIR--GVGGSGKSTLMNLIKYA 524 +F D V+ E + + + + A F G G +GKSTL L+ Sbjct: 195 KFSDWVNELAQGDEAKRTLIWQMIASIVKNRDTANVFFAFVDNGQGRTGKSTLEQLLMNL 254 Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAA-KIKQMTG 583 G + + + + L G+R++I + I+ +K + Sbjct: 255 VGKDNYTSLKLDEF---------GHDFKLANAYGARLIIGDDNEPKGFIDDGSNLKSIVT 305 Query: 584 GDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASF 643 + + + + T N R+ +RR+ ++ F K + A Sbjct: 306 NETVLLNPKGAKPF-TAKFFATVVQSMNGVPTFRDKSGGLYRRFRMLNFPKQYPDTPAGK 364 Query: 644 AQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDI 703 K + Y + +W LK + + + + R D ++++ Sbjct: 365 RIKNDYIYDRQLLEWILKKALEVDVTTIIDT--KESQELVYDTRLDNDPVLYFVEEVVGQ 422 Query: 704 GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLN----LKQKGFIGGIKREKIEKE 759 ++ ++ L + + + E + + + R+ T ++++G+ K K Sbjct: 423 LKSTRVPTNFLFNLFCAFMKAENSPTK--LKQRSFTKQVRPYMERRGWKYDNKNLTASKY 480 Query: 760 WKSKRIIKGLKLKPAFESVDDNS 782 + + +L F+ + + Sbjct: 481 FNKADM----QLVHGFDDLVGTN 499 >gi|298229143|ref|ZP_06962824.1| prophage Sa05, DNA primase, P4 family protein [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255093|ref|ZP_06978679.1| prophage Sa05, DNA primase, P4 family protein [Streptococcus pneumoniae str. Canada MDR_19A] Length = 495 Score = 160 bits (405), Expect = 7e-37, Method: Composition-based stats. Identities = 49/286 (17%), Positives = 95/286 (33%), Gaps = 19/286 (6%) Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE------FLDLVSGY-FES 479 + Q+GI++LET + + + + IT T + + F D ++ Sbjct: 136 NLIPVQNGIINLETKELLPFSPKYVITSKISTAYHAPKRVPTDREGKTFDDWLNSIACND 195 Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539 E++ F + + A+ + +F G G +GK T + G + + + Sbjct: 196 SELVTLFWQIILEAIDPNHTRNKFAIFYGDGNNGKGTFQRFLINLIGESNISALKPAQFA 255 Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599 + +L L+G I E N + + +T GD + G E Sbjct: 256 EK---------HNLETLVGKVCNIGDEAPNEYLKNPSDLMSITSGDTVLVNPK-GRPAFE 305 Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWF 659 + N N W+RR +++PF+ K E E ++ Sbjct: 306 ATFKLFNIFSGNYIPNGGNKTKGWYRRIMIVPFNADFNGEKEKPWIKNEFLANKEVLEYA 365 Query: 660 LKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID-DCCDIG 704 L P+ EE ++ D +W+ + + G Sbjct: 366 LYKAIN-QEPFTHFIEPKAVKGLLEEYQEDNDYLLSWVKHEYMEKG 410 >gi|148993596|ref|ZP_01823067.1| putative phage replication protein [Streptococcus pneumoniae SP9-BS68] gi|168489324|ref|ZP_02713523.1| prophage Sa05, DNA primase, P4 family [Streptococcus pneumoniae SP195] gi|147927817|gb|EDK78839.1| putative phage replication protein [Streptococcus pneumoniae SP9-BS68] gi|183572209|gb|EDT92737.1| prophage Sa05, DNA primase, P4 family [Streptococcus pneumoniae SP195] gi|332071695|gb|EGI82188.1| phage/plasmid primase, P4 family, C-terminal domain protein [Streptococcus pneumoniae GA17570] Length = 489 Score = 160 bits (405), Expect = 7e-37, Method: Composition-based stats. Identities = 48/286 (16%), Positives = 94/286 (32%), Gaps = 19/286 (6%) Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE------FLDLVSGY-FES 479 + ++GI+DL T + + + + IT T + + F D ++ Sbjct: 130 NLVPVKNGIIDLRTKELLPFSPKYVITSKISTAYHAPKRVPTDREGKTFDDWLNSIACND 189 Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539 E++ F + + A+ + +F G G +GK T + G + + + Sbjct: 190 SELVTLFWQIILEAINPNHTRNKFAIFYGDGNNGKGTFQRFLINLIGESNISALKPAQFG 249 Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599 + +L L+G I E N + + +T GD + G E Sbjct: 250 EK---------HNLETLVGKVCNIGDEAPNEYLKNPSDLMSITSGDTVLVNPK-GRPAFE 299 Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWF 659 + N N W+RR +++PF+ K E E ++ Sbjct: 300 ATFKLFNIFSGNYIPNGGNKTKGWYRRIMIVPFNADFNGEKEKPWIKNEFLANKEVLEYA 359 Query: 660 LKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID-DCCDIG 704 L P+ EE ++ D +W+ + + G Sbjct: 360 LYKAIN-QEPFTHFIEPKAVKGLLEEYQEDNDYLLSWVKHEYMEKG 404 >gi|254304008|ref|ZP_04971366.1| possible ATP-binding protein [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148324200|gb|EDK89450.1| possible ATP-binding protein [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 639 Score = 160 bits (405), Expect = 8e-37, Method: Composition-based stats. Identities = 63/431 (14%), Positives = 143/431 (33%), Gaps = 36/431 (8%) Query: 350 KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFN----TDYRRQNVEENSKAKST 405 K+ + + + K D+ + + + + N R+ +E+ + +T Sbjct: 227 KLNLTAIEMYMRKKLDIREYRNILFYIKDDKRYEKDTLNGTNIFREIRKTLEKENIVLNT 286 Query: 406 AQSLEAGSIFSITSD-LLDSSSRF-LGEQDGILDLETGQKVKPTKELYITKSTGTPFVEG 463 Q E + D + ++ + ++G L Q +K ++++ + Sbjct: 287 KQDSEILHLIKTDFRIEEDKNKKYPIAFRNG-WCLYRDQFLK-QEKIFTPFYMDVDYDPD 344 Query: 464 EPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIR-GVGGSGKSTLMNLI 521 + ++ + + E ++ F +G L+ G G +GKST++N++ Sbjct: 345 ANDENVINFIKWFCKGDEGLITLFEEILGHILMLERFPHHIFFFVAGKGKNGKSTMLNML 404 Query: 522 KYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM 581 + + + L+G + + + ++ + IK + Sbjct: 405 NN-WTDGLNSTTALDQFEKE---------TYTYDLIGKIVNLGDDIDDTYIEKSRVIKVI 454 Query: 582 TGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NR 639 GG + AR Y + ++ T N ++ RR + P + I Sbjct: 455 AGGSKIKARALYSMP-VDFKSTATLIFSCNNMPTFKDKSGGMARRVVCFPCNSNIEYGKI 513 Query: 640 DASFAQKL-ETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID 698 D KL +KG+K I+ G ++ I E E D+ + + Sbjct: 514 DLDLDDKLCTDSAKSTLLNLGIKGMKRIIANGGELTITETSKAMTERYLIENDSIAMFFN 573 Query: 699 D------CCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIK 752 + C D+ N + + L Y + ++ T++ L + GF + Sbjct: 574 ETDVNKLCDDMENNTFTK---LYTIYEIFCDENG---YTPSGKNTLSKKLDEFGFESYVG 627 Query: 753 REKIEKEWKSK 763 + K K Sbjct: 628 AGNVRKIRPKK 638 >gi|225860228|ref|YP_002741737.1| prophage Sa05, DNA primase, P4 family [Streptococcus pneumoniae Taiwan19F-14] gi|298502000|ref|YP_003723940.1| prophage Sa05, P4 family DNA primase [Streptococcus pneumoniae TCH8431/19A] gi|225727584|gb|ACO23435.1| prophage Sa05, DNA primase, P4 family [Streptococcus pneumoniae Taiwan19F-14] gi|298237595|gb|ADI68726.1| prophage Sa05, P4 family DNA primase [Streptococcus pneumoniae TCH8431/19A] gi|327390605|gb|EGE88945.1| phage/plasmid primase, P4 family, C-terminal domain protein [Streptococcus pneumoniae GA04375] Length = 489 Score = 160 bits (404), Expect = 8e-37, Method: Composition-based stats. Identities = 49/286 (17%), Positives = 95/286 (33%), Gaps = 19/286 (6%) Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE------FLDLVSGY-FES 479 + Q+GI++LET + + + + IT T + + F D ++ Sbjct: 130 NLIPVQNGIINLETKELLPFSPKYVITSKISTAYHAPKRVPTDREGKTFDDWLNSIACND 189 Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539 E++ F + + A+ + +F G G +GK T + G + + + Sbjct: 190 SELVTLFWQIILEAIDPNHTRNKFAIFYGDGNNGKGTFQRFLINLIGESNISALKPAQFA 249 Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599 + +L L+G I E N + + +T GD + G E Sbjct: 250 EK---------HNLETLVGKVCNIGDEAPNEYLKNPSDLMSITSGDTVLVNPK-GRPAFE 299 Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWF 659 + N N W+RR +++PF+ K E E ++ Sbjct: 300 ATFKLFNIFSGNYIPNGGNKTKGWYRRIMIVPFNADFNGEKEKPWIKNEFLANKEVLEYA 359 Query: 660 LKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID-DCCDIG 704 L P+ EE ++ D +W+ + + G Sbjct: 360 LYKAIN-QEPFTHFIEPKAVKGLLEEYQEDNDYLLSWVKHEYMEKG 404 >gi|94995306|ref|YP_603404.1| DNA primase [Streptococcus phage 10750.4] gi|94548814|gb|ABF38860.1| DNA primase [Streptococcus phage 10750.4] Length = 498 Score = 160 bits (404), Expect = 9e-37, Method: Composition-based stats. Identities = 49/299 (16%), Positives = 100/299 (33%), Gaps = 22/299 (7%) Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ------EFLDLVSGY- 476 R++ +G+ +++T Q + + IT T + +F +S Sbjct: 137 EDYRYIPVANGVYNIQTKQLEPFSPKFIITSKIQTSYTSKARKPILGGWFDFDKWLSSLA 196 Query: 477 FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEAS 536 EV++ + + A+ ++ + + G G +GK T L++ G + N + Sbjct: 197 VNDGEVVELLWQVMNEAINPNRTRKKLVIMVGDGNNGKGTFQALLENLIGRANISNLKPD 256 Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNT 596 + L L G I + + + + + GD + +T Sbjct: 257 QFGKE---------FYLSALDGKVCNIGDDISNKYLDEVSDLMSVASGDPVQVNRKGKDT 307 Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAK 656 Y E+ N RN W+RR +IPF+ K + + Sbjct: 308 Y-EATYRLMCIFSGNDLPKARNKTTGWYRRLCLIPFNADFNGEVERPEIKDQFMKDKQLL 366 Query: 657 KWFLKGVKAYISKGL-DVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714 +W L K + P+ + E ++ D + W+ + N W E + + Sbjct: 367 EWVL--FKILNMEDFDKFIEPKAVREVIESYKKDNDYIRLWVTEY--YIPNGWHEVNHV 421 >gi|325662741|ref|ZP_08151335.1| hypothetical protein HMPREF0490_02075 [Lachnospiraceae bacterium 4_1_37FAA] gi|325470978|gb|EGC74206.1| hypothetical protein HMPREF0490_02075 [Lachnospiraceae bacterium 4_1_37FAA] Length = 434 Score = 160 bits (403), Expect = 1e-36, Method: Composition-based stats. Identities = 65/443 (14%), Positives = 147/443 (33%), Gaps = 29/443 (6%) Query: 335 KKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQ 394 K+ + + +D++ + + + + + + + + Sbjct: 3 FKEYSQEWFEDGQIDEVAFCENFLQRMPLKCINGIFFSYDGMLPDGEVEKEIYRMVKPVL 62 Query: 395 NVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITK 454 + K K + L+ + +D + ++G L G + + + Sbjct: 63 TKGISKKVKQLLEVLKLEAYSEELPVQMDR----IHVKNGTYFLS-GSFTEM--KEFCLN 115 Query: 455 STGTPFV-EGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSG 513 + + + +L +S E ++ + +G L+ NKAQ+ + I G GG G Sbjct: 116 RLPVNYEMKEAKPERWLKFLSELLEEDD-IPTLQEYMGYCLIPSNKAQKLLIILGKGGEG 174 Query: 514 KSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI 573 KS + +++ G N S+I + + L +++ + Sbjct: 175 KSRIGLVMRKILG----TNMNVSNIQK-----VEHNRFARADLEYRLLMVDDDMKLEALK 225 Query: 574 NAAKIKQMTG-GDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF 632 + IK + D M + + + + ++RR I++ Sbjct: 226 DTNYIKTIVTLEDKMDLERKSKQSVQGNLYVRFLCFGNGSLSALHDRSYGFYRRQIILTV 285 Query: 633 DKPIANR--DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGT 690 A+R D +KL+ + W L G+K + I E K E + Sbjct: 286 KDVPADRVDDPYLIEKLQR-EADDIFLWCLHGLKRLLKNEYRFTISERAKKNLHEAMESG 344 Query: 691 DTYQAWIDD--CCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLK--QKG 746 + A++ + EN S +L ++Y + E K +S ++ + LK +K Sbjct: 345 NNIIAFMQSAGYIRLEENTTATSKNLYQAYCRWCEDNTE---KPMSAKSFSGYLKENEKK 401 Query: 747 FIGGIKREKIEKEWKSKRIIKGL 769 + K+ R +G+ Sbjct: 402 YHIHYSTNIPSDNGKNARGFQGI 424 >gi|222152411|ref|YP_002561586.1| phage replication protein [Streptococcus uberis 0140J] gi|222113222|emb|CAR40712.1| putative phage replication protein [Streptococcus uberis 0140J] Length = 479 Score = 160 bits (403), Expect = 1e-36, Method: Composition-based stats. Identities = 43/284 (15%), Positives = 92/284 (32%), Gaps = 21/284 (7%) Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ------EFLDLVSGY- 476 + ++ ++G+ ++ T + + IT TPF +F Sbjct: 118 QAYNYIPVKNGVYNILTQKLEPFDPKFIITSKIATPFNPDAKKPILNGWFDFDKWFDSLA 177 Query: 477 FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEAS 536 EV+ + + A+ ++ + + G G +GK T L++ G + + N + Sbjct: 178 CNDSEVVTLLWQIMNEAINPNRTRKKMVILTGDGNNGKGTFQALLENLIGKENISNLKPD 237 Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNT 596 + L G I + + + + + GD + T Sbjct: 238 QFKE----------FYTNALEGKTCNIGDDISNKYLDEVSDLMSIVSGDRIQVNRKGKET 287 Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAK 656 + E+ N RN + W+RR ++PF+ K + Sbjct: 288 F-EATYRLLCIFSGNDIPRARNKTNGWYRRLCIVPFNADFNGNKERPEIKDKFIRNKSLL 346 Query: 657 KWFLKGVKAYISKGL-DVDIPEVCLKAKEEERQGTDTYQAWIDD 699 +W L K K P+V K ++ ++ D ++ + Sbjct: 347 EWIL--FKILTMKDFDKFIEPKVVTKMLDQYKRDNDYILTFVTE 388 >gi|291336798|gb|ADD96333.1| primase 2 [uncultured organism MedDCM-OCT-S08-C700] Length = 364 Score = 160 bits (403), Expect = 1e-36, Method: Composition-based stats. Identities = 44/305 (14%), Positives = 90/305 (29%), Gaps = 48/305 (15%) Query: 26 GDKRPQRLGKWEEQLLSSEKIDKLP----ACGFGFVCGVGEQPLYAFDIDSKDEKTANTF 81 +KRP + W+ L ++ K + G G CG L D D A Sbjct: 20 KNKRPYQND-WQNNPLKQSQLFKELVAKRSTGIGVCCGTPSGGLLFLDHDGPSA--AKIL 76 Query: 82 KDT---FEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQG---------HLDIL 129 + L + +V G+ + I +++ ++ K KT + G +++ Sbjct: 77 GEWGFSLSSLPPSWMVTSGRVGRFQIIYKVPEKYWSKIKTRKYQTGVKDEDGSVEQIELR 136 Query: 130 GCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKK 189 G + HP T Y W + ++ + + ++ T + Sbjct: 137 WDGTQSIVSGSHPMTDG-YRWMDARSPRDLS-IAEAPLAIIKKMMELNKKKTPQIQTLNS 194 Query: 190 SIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEI 249 +++ + N + +D W+ + MA H S Sbjct: 195 DTDKARSLLQSINPSRLD-----------------DYDIWLKIGMAAHSVGDDS--LLSD 235 Query: 250 ARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSD 309 S++ S Y KW +F + + +L + + + Sbjct: 236 WENLSQKNSKYKSGECEKKWSSFKSSGV--------SLGTLQKFASEDGWTPPPRTFPTS 287 Query: 310 AYNKA 314 K Sbjct: 288 IEPKE 292 >gi|307126159|ref|YP_003878190.1| prophage Sa05, DNA primase, P4 family [Streptococcus pneumoniae 670-6B] gi|306483221|gb|ADM90090.1| prophage Sa05, DNA primase, P4 family [Streptococcus pneumoniae 670-6B] Length = 492 Score = 160 bits (403), Expect = 1e-36, Method: Composition-based stats. Identities = 49/286 (17%), Positives = 94/286 (32%), Gaps = 19/286 (6%) Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE------FLDLVSGY-FES 479 + Q+GI++LET + + + IT T + + F D ++ Sbjct: 133 NLIPVQNGIINLETKELFPFSPKYVITSKISTAYHAPKRVPTDREGKTFDDWLNSIACND 192 Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539 E++ F + + A+ + +F G G +GK T + G + + + Sbjct: 193 SELVTLFWQIILEAINSNHTRNKFAIFYGDGNNGKGTFQRFLINLIGESNISALKPAQFA 252 Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599 + +L L+G I E N + + +T GD + G E Sbjct: 253 EK---------HNLETLVGKVCNIGDEAPNEYLKNPSDLMSITSGDTVLVNPK-GRPAFE 302 Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWF 659 + N N W+RR +++PF+ K E E ++ Sbjct: 303 ATFKLFNIFSGNYIPNGGNKTKGWYRRIMIVPFNADFNGEKEKPWIKNEFLANDEVLEYA 362 Query: 660 LKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID-DCCDIG 704 L P+ EE ++ D +W+ + + G Sbjct: 363 LYKAIN-QEPFTHFIEPKAVKGLLEEYQEENDYLLSWVKHEYMERG 407 >gi|28379719|ref|NP_786611.1| prophage Lp4 protein 8, DNA primase/helicase [Lactobacillus plantarum WCFS1] gi|28272559|emb|CAD65486.1| prophage Lp4 protein 8, DNA primase/helicase [Lactobacillus plantarum WCFS1] Length = 500 Score = 159 bits (402), Expect = 2e-36, Method: Composition-based stats. Identities = 43/280 (15%), Positives = 94/280 (33%), Gaps = 21/280 (7%) Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDL-VSGYF-----E 478 + +GI +L Q + + + T T + + + + +F Sbjct: 139 DRYLVPVNNGIWNLHQHQLIPFSPKYVFTTKIATNYRDNATTPNIKGWTIDNWFDELACG 198 Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGV-GGSGKSTLMNLIKYAFGNQYVINAEASD 537 +E+++ + L G ++ I + G SGK T LI G V + ++ Sbjct: 199 DDEIVELLWEVINDCLNGNYTRKKAIFLFSELGNSGKGTFQELITNLVGMDNVGTLKVNE 258 Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI-NAAKIKQMTGGDCMTARLNYGNT 596 L L+G + I + + I +++ + GD + + Sbjct: 259 FD---------VRFRLAGLVGKTVCIGDDIAPDIYIKDSSNFNSVVTGDLVNIEFKGQDG 309 Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAK 656 Y+ + T N N RR +++PF+ + +++ + + + Sbjct: 310 YTSAL-RCTIVQSCNGLPNFHNK-GGTMRRLVIVPFNNHFQGKGDNWSIRNDYITRKDVL 367 Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAW 696 ++ L KA +PEV KA + + + Sbjct: 368 EYVL--YKALQLDFDKFSVPEVSKKALADFELDNNPLIGF 405 >gi|153213459|ref|ZP_01948770.1| integrase [Vibrio cholerae 1587] gi|124115923|gb|EAY34743.1| integrase [Vibrio cholerae 1587] Length = 792 Score = 159 bits (402), Expect = 2e-36, Method: Composition-based stats. Identities = 103/664 (15%), Positives = 200/664 (30%), Gaps = 95/664 (14%) Query: 13 AIHNGFKLIPLRLGDKR-----PQRLG-KWEEQLLSSEKIDKLPA-------CGFGFVCG 59 I G+ ++PL P +G + + S ++ G CG Sbjct: 35 YIEVGYYVLPLDPKKGEGKSLPPSSMGVSYAQAAKSRRAVESWFGLGGKFRGYNIGLACG 94 Query: 60 VGEQPLYAFDIDSKDEKTANTFKDTF---EILHGTPIVRIGQK--PKILIPFRM---NKE 111 ++A D+D +D+K F + P +I + F+ K Sbjct: 95 KN-GGIFAIDVDVEDKKGNKGFLALDMLEQEFGKLPETQIQRTASGGTHYIFQWTQGAKT 153 Query: 112 GIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVE 171 K T+G D C + VAY + T + + +E Sbjct: 154 SSGKIAKAIDTRGG-DEHSCRSHIVAYPSRVRNGGYEMVATTVAPAE------IPSWVLE 206 Query: 172 YLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIP 231 L K K+S + ++ +YT R++ L + +DEW+ Sbjct: 207 ALAK------PDRSSKKQSRGSEEITDDDIENKYTPRQLWKMLDFINPDELE--YDEWLM 258 Query: 232 VVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLF 291 + A+H + + KG E+A RWS++GS Y+ + +W FD T Sbjct: 259 CLQAIHSQYPDA-KGFELADRWSQRGSRYEPNEVSIRWGAFDDSGEVRVG----TLIYFA 313 Query: 292 YHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKI 351 G + + + S Y + + + K + + + + I Sbjct: 314 KRGGFNPKTEPKGADAPSQDAEDIVSEYNEKYAIVLHGGKLRVMVETPSDNPFKEPYELI 373 Query: 352 TASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEA 411 T +F+ + DV L++ N K + + W ++ +R +++ Sbjct: 374 TKG--DFISLTEHDVVFLAD-ANGNPKRVQKSKIWRDSSEKRIYEGGLVFEPGKGRTV-- 428 Query: 412 GSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLD 471 L G Q +K L+ + LD Sbjct: 429 --------------GNALNMWRGW----QYQPIKGDWSLFKQHILKVCGGNEKHYNWMLD 470 Query: 472 LVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVI 531 ++ + N + ++GV G+GK T+ N+ FG Y Sbjct: 471 WMADAIQDP----------------MNPKGCAVILKGVEGAGKGTIFNIFGELFGRYYKH 514 Query: 532 NAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN-ENDEINAAKIKQMTGGDCMTAR 590 + ++ L + +V E + A +K +T + Sbjct: 515 IVQEDQLVGKFN----------AHLQEALLVFADEVTYGGSKKVAGVLKGITTEKSLMVE 564 Query: 591 LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETK 650 + I N+ F+ + RR+ ++ +A++D F Sbjct: 565 RKGLDA-VRYRNCMRLGIASNESWFIPAGPQS--RRWFILEVPSDVASKDDYFTPLYRQM 621 Query: 651 YTLE 654 Sbjct: 622 EKEG 625 >gi|67923658|ref|ZP_00517127.1| hypothetical protein CwatDRAFT_2551 [Crocosphaera watsonii WH 8501] gi|67854499|gb|EAM49789.1| hypothetical protein CwatDRAFT_2551 [Crocosphaera watsonii WH 8501] Length = 956 Score = 159 bits (402), Expect = 2e-36, Method: Composition-based stats. Identities = 63/370 (17%), Positives = 109/370 (29%), Gaps = 80/370 (21%) Query: 14 IHNGFKLIPLRLGDKRPQRLGKWEE----------------QLLSSEKIDKLPAC--GFG 55 I + + L P++ DKRP R W+E Q L S + G G Sbjct: 44 IPDNWVLTPVK--DKRPLRP-NWQEEEAIARCDLIELLVAGQKLKSSNGKEWHCHWTGIG 100 Query: 56 FVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKK 115 G + A D D + L TP G+ + + +R++ E +K Sbjct: 101 LRLGTVSGGVLAIDADGDLAEAKLQELS-GGDLPLTPCWTSGKPGRRQLLYRISPEYWEK 159 Query: 116 KKTTESTQG---HLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRF--------------- 157 KT + G HL+ G V +Y W P Sbjct: 160 IKTVKIDCGQGQHLEFRWDGCQSVLPPSKHPETGQYHWLVSPEESAQRNAQNQELTEKNG 219 Query: 158 KVEDTPLLSEEDVEYLFKFFQEITVPLVKDK----------------------------- 188 + T + + +E+L + Q + K Sbjct: 220 EDVATAIAPDWLIEFLLQQNQPVYSDSPSLKLPCTENSSSENAPHKPVNELQGGQTHSDE 279 Query: 189 ----KSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSS 244 + S T + ++++T+ + + +D+W+ V MA+ + G Sbjct: 280 SQPIYPPVYSSKGTYSPSQKWTDEDWARSYLEALASWRADDYDQWVQVGMALQSVSDG-- 337 Query: 245 KGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLA 304 WS+Q S Y KW +F + + G P + Sbjct: 338 -LLWDWEHWSRQSSKYKPGGCERKWRSFKPSKGISIG----SLAQWAKEDGWQSPFKSQS 392 Query: 305 SRFSDAYNKA 314 S F + N+ Sbjct: 393 SSFQETLNRE 402 >gi|149017871|ref|ZP_01834330.1| putative phage replication protein [Streptococcus pneumoniae SP23-BS72] gi|147931435|gb|EDK82413.1| putative phage replication protein [Streptococcus pneumoniae SP23-BS72] Length = 492 Score = 159 bits (402), Expect = 2e-36, Method: Composition-based stats. Identities = 58/341 (17%), Positives = 108/341 (31%), Gaps = 22/341 (6%) Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE------FLDLVSGY-FES 479 + Q+GI++LET + + + IT T + + F D ++ Sbjct: 133 NLIPVQNGIINLETKELFPFSPKYVITSKISTAYHAPKRVPTDREGKTFDDWLNSIACND 192 Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539 E++ F + + A+ + +F G G +GK T + G + + + Sbjct: 193 SELVTLFWQIILEAINSNHTRNKFAIFYGDGNNGKGTFQRFLINLIGESNISALKPAQFA 252 Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599 + +L L+G I E N + + +T GD + G E Sbjct: 253 EK---------HNLETLVGKVCNIGDEAPNEYLKNPSDLMSITSGDTVLVNPK-GRPAFE 302 Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWF 659 + N N W+RR +++PF+ K E E ++ Sbjct: 303 ATFKLFNIFSGNYIPNGGNKTKGWYRRIMIVPFNADFNGEKEKPWIKNEFLANDEVLEYA 362 Query: 660 LKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID-DCCDIG--ENLWEESHSLAK 716 L P+ EE ++ D +W+ + + G E L + Sbjct: 363 LYKAIN-QEPFTHFIEPKAVKGLLEEYQEENDYLLSWVKHEYMERGWHELDVVPVFILTR 421 Query: 717 SYSEYREQELNYDRKRIST-RTVTLNLKQKGFIGGIKREKI 756 S Y E + +L+Q R+K Sbjct: 422 SLKHYAEDMGIPKPNVYGAGKETIKHLQQLTPNRYSLRKKR 462 >gi|116326764|ref|YP_803301.1| hypothetical protein TNAV2c_gp078 [Trichoplusia ni ascovirus 2c] gi|102231772|gb|ABF70595.1| hypothetical protein [Trichoplusia ni ascovirus 2c] Length = 1046 Score = 159 bits (401), Expect = 2e-36, Method: Composition-based stats. Identities = 79/449 (17%), Positives = 162/449 (36%), Gaps = 47/449 (10%) Query: 290 LFYHHGKLIPKGLLASRFSDAYNKAMFSIYKK-----GHFLYTADTKAWYKKDKNNVY-- 342 L + + S +KK ++ + W + + + Sbjct: 522 LNDENEDEDIDFTILSDTDVDIANVFLKAWKKKIMYLDDVMFKFNGTLWKYAQEEDAFLR 581 Query: 343 ----IWSLTLDKITASIMNFLVSMK-EDVFDLSEE----------PEDNNKNSKSPRFWF 387 +W +I + L ++ + + + + ++ + Sbjct: 582 RALTVWVEKFKRIADDHVQELKQVEVNEAMAIVNDGGGSRNRTLPKKQPVTRAEYLQKVI 641 Query: 388 NTDYRR-QNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP 446 ++ +R+ +N S +++ +D++ +D + ET Sbjct: 642 DSIWRKCKNSNTQSGIVKAIKTICTTGAGHDEMVQMDNNENLTAFEDMVFCNETLTMRNG 701 Query: 447 TKELYITKSTGTPFVEGEP-----SQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQ 501 E +++ ++ E + S F +E+ +YF G N + Sbjct: 702 RPEDMLSRCLKCKYIPYEQLEPEAIEFVNIFYSSLFPDKEICEYFQLSCSQIFGGRNVFK 761 Query: 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRI 561 ++ GVG +GKS + L + G + ++ G ANP + RL G R+ Sbjct: 762 QYQVWTGVGNNGKSMCIKLFETMLGRLFSKLNKSVLTSLK--HNIGAANPDMYRLRGVRM 819 Query: 562 VIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY--SESPASFTPFIVPNKHLFVRNP 619 V+ E ++DE+N + K ++GGD AR Y + + A F P IV N +R+P Sbjct: 820 VVTDELAKSDELNVGQTKLLSGGDSFIARDLYQKSTQMATIKAQFIPIIVCNDLPLLRDP 879 Query: 620 DDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVC 679 D+A WRR VIPF+ A ++ +LE + ++ ++ I ++ +P Sbjct: 880 DEAAWRRERVIPFESYFA-----YSNELEIPEEIPKER--IQMRDDNIMVKINKYMPAFA 932 Query: 680 LKAKEEE-----RQGTDTYQAWIDDCCDI 703 ++ + + Y DDCC+ Sbjct: 933 SCLLKKYIDFEKLRRSSPYN---DDCCEK 958 >gi|307578050|gb|ADN53668.1| primase-like protein [Staphylococcus aureus] Length = 750 Score = 159 bits (401), Expect = 2e-36, Method: Composition-based stats. Identities = 91/775 (11%), Positives = 223/775 (28%), Gaps = 96/775 (12%) Query: 27 DKRPQRLGKWEEQLLSSEKIDKLPA-----------CGFGFVCGVGEQPLYAFDIDSKDE 75 K P ++ +S+ A G GFV DID+ + Sbjct: 42 SKIPYSYAGYKASSTNSDTWTIFDAINSIYEQNERYDGIGFVI-SEHDNYIVLDIDNAID 100 Query: 76 KTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYF 135 +++ + + L F + ++KK +++ ++ Sbjct: 101 ESSQITSNLALDMTKMTYCEKSPSGTGLHCFFKGELPKERKKKRSDL--DIELYDNARFM 158 Query: 136 VAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSK 195 + + + EE E KS + + Sbjct: 159 TMTGESI--GQREISDDQSLLNNLVERYFKQEELPETFIGNN--------ITNKSNLDDE 208 Query: 196 TWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHH----ETRGSSKGKEIAR 251 N + +I+ L E +++ + V +H+ ++ + + I Sbjct: 209 DVINIMLKSKQKDKISNLLQGNYEPYFDSPSE---AVQSLLHYLAFYTSKDKEQMERIFL 265 Query: 252 RWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAY 311 ++ + + N W + ++ + + ++ GK P L Sbjct: 266 NYNNLTDKWGSKRGNTTWGQLELDKAINNQSE------VYVKPGKENPSKL--------- 310 Query: 312 NKAMFSIYKKGHFLYTADTKAWYKK---DKNNVYIWSLTLDKITASIMNFLVSMKEDVFD 368 +W+ D N ++ T+ +V + D Sbjct: 311 ----------------IKKGSWWFYPNDDTNRKPKFNHTIMAKFICQEYHIVRYPDADSD 354 Query: 369 LS--EEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSS 426 + + K+ R N+++NS + ++ + S+ ++ Sbjct: 355 IYIYNTQTGIYELDKTGRKLRKIIRSLDNLKDNSVKEVRNYIVDMCDVRSVVNNE----- 409 Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEV-MDY 485 ++ ++G++ T T ++++ T + + + + E + Sbjct: 410 -YVAVKNGLVHYHTKIFRTFTPDIFVIDKLPTAYNPNAYDEFVDTTIQKVSCNHETTIMN 468 Query: 486 FTRCVGMALLGGNKAQRFIHIRGV-GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544 L + I++ G +GKST+ ++IK F + I++ + P Sbjct: 469 IYEMFAQVLYPKILIDKIIYLLGTVADNGKSTVQHMIKATFDSGGRISSVS-------PQ 521 Query: 545 EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604 + + + G ++ + + +A IK G + ++ S Sbjct: 522 RLANNHFAGSSIYGKMANMVDDLPNVEIEDAGNIKTAITGGYLEIEQKGKDSQS-VRMQT 580 Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFA------QKLETKYTLEAKKW 658 I N + + + +R +IPF+ + + + K Sbjct: 581 PFIIASNHYPKFKESGEQINKRLHIIPFNYSFKDDQERLSVTESTNKIYNKSAKEYVLKL 640 Query: 659 FLKGVKAYISKGLDVDIPEVCLKAKEEERQG-TDTYQAWIDDCCDIGENLWEESHSLAKS 717 + + + + P E + ++++ +I L K Sbjct: 641 AIDTLADMLQRDGSYITPNERSDKSAELFSDNNNPLSEYLENR-NIDFFLNNPGAETYKD 699 Query: 718 YSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLK 772 Y + + RK ++ + L + + KR E + K KLK Sbjct: 700 YKVWCHSN--FIRKPVNKDDF-ITLLENYYDIEWKRSVKYTENNVRWGFK--KLK 749 >gi|317495911|ref|ZP_07954274.1| phage/plasmid primase [Gemella moribillum M424] gi|316914088|gb|EFV35571.1| phage/plasmid primase [Gemella moribillum M424] Length = 787 Score = 158 bits (400), Expect = 2e-36, Method: Composition-based stats. Identities = 77/652 (11%), Positives = 183/652 (28%), Gaps = 77/652 (11%) Query: 159 VEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITA----FL 214 + P++ + + K + P+ + K K ++ + ++ + +L Sbjct: 135 LSGLPIVKKGNEHIFIKHLDGLPYPVQEAAKEEKKVKVEYTASDVRLSDEDFKEMFIRYL 194 Query: 215 SCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYD-EENFNYKWDTFD 273 E G +E+ + + +AR + +YD + Sbjct: 195 ELDNENLNPGDSEEYNRALSVL----------LSLARDVCYKDISYDVACECSDLLANIG 244 Query: 274 FEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAW 333 + +S + K +F Y K Sbjct: 245 ANPDKYREDNLNKINHAIKSWQSNSNYFENEKSYSMLQRFEIVGNKKDKNFAYLVRCKLN 304 Query: 334 YKKDKNNVYIWS----LTLDKITASIMN------------FLVSMKEDVFDLSEEPEDNN 377 + W + +I+N F + K ++ + + Sbjct: 305 KPISNTSELHWRLFTIGEQWRKENTIVNKKTGKKIISQMPFYIIAKFLQENIPIKKGGIH 364 Query: 378 KNSKS--------------PRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLD 423 +++ + + + + +K K + L A + + Sbjct: 365 EDTALLFFYDFSKGIYTSNEDYIKTCIKKLEIRYKLTKLKDITEDLRA----NTKFEKPY 420 Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGE---------PSQEFLDLVS 474 + +G+ + +T + +IT T + + + ++ Sbjct: 421 RPEHLIAVGNGLFNTKTKLLESFNPKYFITAKVDTNYNINALKNYEAIKDIYFNYDNWLN 480 Query: 475 GY-FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533 E++ F + A+ ++ + G G +GKST +I G+ + A Sbjct: 481 SIACGDPEIIALFWQLTNEAINPNKTRRKIAIMLGSGTNGKSTFRQMIINLIGDTNISVA 540 Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593 ++ ++ L L G E K+K ++ G+ + L Sbjct: 541 TPHEL---------QSRFGLTSLEGKICNYGDEVGTKPLDEMDKLKSISSGESVNYELKN 591 Query: 594 GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTL 653 + N+ +++ +A R ++IPF + + K Sbjct: 592 KD-VRNYDFKTLLIFNSNEIPLIKDKSEAVLNRLLIIPFKANFEGVKDESIKDEKLKDK- 649 Query: 654 EAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIG--ENLWEES 711 ++ L A + +P+ + E +Q D+ ++ D G Sbjct: 650 RILEYIL--YTALNLEFDKFIVPKAVQQQLEVYKQENDSIYNFMLSYIDEGYHRVSCVPI 707 Query: 712 HSLAKSYSEYREQELNYDRKRISTR---TVTLNLKQKGFIGGIKREKIEKEW 760 + Y Y + RKRI + + K + +K + KE Sbjct: 708 SFITNDYENYCYENGYNPRKRIGKQLEIHLNNRFKGDIYQYEVKNHRFTKEN 759 >gi|228961470|ref|ZP_04123081.1| DNA primase [Bacillus thuringiensis serovar pakistani str. T13001] gi|228798184|gb|EEM45186.1| DNA primase [Bacillus thuringiensis serovar pakistani str. T13001] Length = 812 Score = 158 bits (400), Expect = 2e-36, Method: Composition-based stats. Identities = 63/389 (16%), Positives = 128/389 (32%), Gaps = 27/389 (6%) Query: 385 FWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKV 444 F + N+KA+ L + ++ S + Q+G+ +L+T + Sbjct: 413 FIKRVISWLEPRLNNTKAEEVIYHLTNKAEVQEKTN----SRYLIPVQNGVFNLKTKKLE 468 Query: 445 KPTKELYITKSTGTPFVEGEPSQEFL-----DLVSGY-FESEEVMDYFTRCVGMALLGGN 498 T + T T + E + V E+ + + + AL G Sbjct: 469 PFTADYVFTTKITTRYYEDPVNPILDGWDVVSWVKSIACGDLEIENLLWQVMNDALNGNY 528 Query: 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMG 558 ++ I + G G +GK T LI G + + + ++ + L L G Sbjct: 529 SRRKSIFLIGEGNNGKGTFQELIMNLIGMKNIATLKVNEFDE---------RFRLSVLEG 579 Query: 559 SRIVIISETNENDEINAA-KIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVR 617 VI + N I+ + + GD ++ + + N + Sbjct: 580 KTAVIGDDVPANVYIDDSSNFNSVVTGDMVSVEFKNR-PIYNTVFRCSVIQSTNGMPKFK 638 Query: 618 NPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPE 677 N + RR +++PF + +F K E ++ L +A DIP+ Sbjct: 639 NKTNGTIRRIVIVPFQADFNGKTENFKIKDEYIKDERVLQFVL--YRAINMDFETFDIPK 696 Query: 678 VCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRT 737 V L+ E +Q D + I + + Y Y++ ++ K ++ R Sbjct: 697 VSLQELEVFKQDNDPVLDF---KLSIFDEWGIQEVPKYIVYGFYKKFCMDNGYKYLADRQ 753 Query: 738 VTLNLKQ-KGFIGGIKREKIEKEWKSKRI 765 ++ G + + + K + Sbjct: 754 FYKQFRRYLGEEWEDSQNRFRYDSLIKYV 782 >gi|90961737|ref|YP_535653.1| Phage DNA primase [Lactobacillus phage Sal1] gi|90820931|gb|ABD99570.1| Phage DNA primase [Lactobacillus phage Sal1] gi|300214516|gb|ADJ78932.1| Phage DNA primase [Lactobacillus salivarius CECT 5713] Length = 289 Score = 158 bits (400), Expect = 3e-36, Method: Composition-based stats. Identities = 42/288 (14%), Positives = 108/288 (37%), Gaps = 27/288 (9%) Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540 ++++ + N+ +F + G G +GKST +++I+ G++ + + + S++ Q Sbjct: 10 DLVNLLYEIIAYTFYRRNELGKFFILTGSGANGKSTYLDMIRTLLGSKNISSLDVSELDQ 69 Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600 L G I + +++ + + +K++ G+ +TA + + Sbjct: 70 ---------RFKTGELAGKLANIGDDISDSYIKDTSILKKLVTGEAVTAERKGLDPFM-F 119 Query: 601 PASFTPFIVPNKHLFV--RNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKW 658 N + + A RR +++PF+ + +D + K KY L + Sbjct: 120 ENYSKLLFSANSIPRLGKGSDTKALNRRMVIVPFNATFSPKDPDY--KPYIKYDLRQENA 177 Query: 659 F-------LKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEES 711 ++ + + E+ + E+ + + DD + + L + + Sbjct: 178 IKYLIVKSIEALHRILENN-GFTKSELADRELEKYEYENNPILGFFDD-LEETDYLNQPT 235 Query: 712 HSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKE 759 + K Y+EY + +S + + + F K ++ + Sbjct: 236 KDVYKLYTEYCLRNG---LNSVSNISFSRQITSH-FNLTSKSSRVNGK 279 >gi|309812094|ref|ZP_07705854.1| D5-like protein [Dermacoccus sp. Ellin185] gi|308433973|gb|EFP57845.1| D5-like protein [Dermacoccus sp. Ellin185] Length = 875 Score = 158 bits (399), Expect = 3e-36, Method: Composition-based stats. Identities = 84/574 (14%), Positives = 184/574 (32%), Gaps = 90/574 (15%) Query: 284 RSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYI 343 L+ + +++A+ + Y + AD K W Sbjct: 302 DYAPGEPTLLRQALMQGHDADADWAEAWVANRAARY----ARWVADMKTWMVWRAPIWEP 357 Query: 344 W-------------SLTLDKITASIMNFLVS-MKEDVFDLSEEPEDNNKNSK-------- 381 + ++N + ++E + L EE +K+ Sbjct: 358 CGVPLSHLSSWLLDEARRIEPEVGVLNEEIEPLEEQIAALKEEQSAYDKDDDEWKELAAE 417 Query: 382 -------------SPRFWFNTDYRRQNVEENSKAKSTAQ-SLEAGSIFSITSDLLDSSSR 427 + ++ + ++ A + + S I + LD + Sbjct: 418 VGKLTHEINGKSARRDAVKRIEKTIRDARSRRRMEAIAAVAADLSSPMRIMTADLDPNPH 477 Query: 428 FLGEQDGILDLET------GQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEE 481 + +G+L L+ + V E+ T G + E + LD + E Sbjct: 478 AIPMSNGMLRLDDLDESGAPRLVPHAPEMLSTIKPGCEWRGLEATSPLLDALLEALPDFE 537 Query: 482 VMDYFTRCVGMALLG-GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540 + VG LLG + + + G +GK+ LM+ I AFG+ + + Sbjct: 538 TRTFLQWIVGADLLGTSTSYRWLVQLVGPESNGKTLLMDAIHGAFGDSVRLLTDEVL--- 594 Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600 E G +P ++L G R+ + E D I A ++K++ G ++AR + Sbjct: 595 -GGTEPGAPSPGQMKLRGCRLGYLEEVP-GDIIRAHQLKRLVGTPTLSARELHK-GLVTW 651 Query: 601 PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN---------------RDASFAQ 645 A+ + ++ N + + D A + R ++ F + R+ + A Sbjct: 652 RATHSLMLITNDVVQIAGGDAAAYGRVQLLKFPFTFTDDPTLLEMGEQSGYRPRNPALAA 711 Query: 646 KLETKY---TLEAKKWFLKGVKAYIS-----------KGLDVDIPEVCLKAKEEERQGTD 691 ++++ W ++G Y++ +GL + +P + R D Sbjct: 712 AVKSREPDLMAAVAAWAVRGSLDYLAAQEDPERRQLGRGLGMPLPREVERETSRWRGDVD 771 Query: 692 TYQAWIDDCCDI--GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLN---LKQKG 746 + + + ++ + + L ++ +Q + L+ Sbjct: 772 AAAS-LAEYLEVTGDPTHFLPNDDLKILWTFTSDQTGRSAPSARTVNDRVSKAEPLRSAL 830 Query: 747 FIGGIKR--EKIEKEWKSKRIIKGLKLKPAFESV 778 G + R + +S R G++L A +V Sbjct: 831 ARGDVTRPNSPRKVGGRSVRGWAGVRLTAAGHAV 864 >gi|148988895|ref|ZP_01820310.1| DNA primase [Streptococcus pneumoniae SP6-BS73] gi|147925706|gb|EDK76782.1| DNA primase [Streptococcus pneumoniae SP6-BS73] Length = 496 Score = 157 bits (397), Expect = 5e-36, Method: Composition-based stats. Identities = 52/322 (16%), Positives = 106/322 (32%), Gaps = 22/322 (6%) Query: 388 NTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDL---LDSSSRFLGEQDGILDLETGQKV 444 N +R+ ++ +S+ S LE S + + LD R++ +G+ +++T + Sbjct: 92 NDIFRKLLLKYDSRLTSNKFFLELISYIRTETKMKPPLD-DYRYIPVANGVYNIKTHKLE 150 Query: 445 KPTKELYITKSTGTPFVEGEPSQ------EFLDLVSGY-FESEEVMDYFTRCVGMALLGG 497 + + IT T + +F + +EV+ + + A+ Sbjct: 151 EFSPNFVITSKIQTEYNPCARKPILDGWFDFDRWLEALAVNDKEVVALLWQVINEAINPN 210 Query: 498 NKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLM 557 ++ + + G G +GK T L++ G + N + + L L Sbjct: 211 RTRKKMVLMVGDGNNGKGTFQTLLENLIGRSNISNLKPDQFGKE---------FYLGALE 261 Query: 558 GSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVR 617 G I + + + + + GD + E+ N R Sbjct: 262 GKVCNIGDDISNKYLDEVSDLMSVISGDPVQVNKKSLQP-VEARFRLLCIFSGNDLPRAR 320 Query: 618 NPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPE 677 N W+RR +IPF + K E +W L V PE Sbjct: 321 NKTMGWYRRLCIIPFRADFNGQKERHEIKDRFIKNKELLEWVLFKVLNM-PDFDSFIEPE 379 Query: 678 VCLKAKEEERQGTDTYQAWIDD 699 + + + D + W+++ Sbjct: 380 AVKEMLSKYKNDNDYIKVWVEN 401 >gi|327198746|emb|CCA61447.1| unnamed protein product [Diadromus pulchellus ascovirus 4a] Length = 925 Score = 157 bits (397), Expect = 5e-36, Method: Composition-based stats. Identities = 61/398 (15%), Positives = 130/398 (32%), Gaps = 24/398 (6%) Query: 389 TDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTK 448 T+ + E + + + +D + + + D+ G K Sbjct: 525 TEKETKYCETQKNKAGLRMAFIEHIVDNDFESKIDENLDVFATANCVYDVGEGALRKARP 584 Query: 449 ELYITKSTGTPFVEGEPS---QEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIH 505 ++ +TG + E + F + D + + G ++ + Sbjct: 585 HDFVYTNTGWDYDERAADEHLPAVREFFERVFPVAQERDVVVTYLASLIHGYRTDKKLLA 644 Query: 506 IRG--VGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVI 563 G +GK+TLM L++ FG+ + + + L G R++I Sbjct: 645 FTDKRNGNNGKTTLMTLLRTFFGDY-TKTNNNFFLKGAFAKDKDAHDGGTATLKGKRLLI 703 Query: 564 ISETNENDEINAAKIKQMTGG--DCMTARLNYGNTYSESPASFTPFIVPNK--HLFVRNP 619 E ++ ++ +K +TGG + R ++ N+ Sbjct: 704 CDELKKSMRLDEGTVKNITGGANQELQGRRMGKEDVFRLTVQCGVILIFNEGDCPKFDAT 763 Query: 620 DDAWWRRYIVIPFDKPIA--NRDAS---FAQKLETKYTLEAKKWFLKGVKAYI----SKG 670 D+A+ R +++PF D F + + + L +K +I G Sbjct: 764 DNAFMERLVIVPFRSKFVGGEADPDTYTFQRDCNISDKFKLWRSAL--LKHFISHCRKNG 821 Query: 671 L-DVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYD 729 + D+++P + K E + + W+ D E + + L + Y + E + Sbjct: 822 IADMEMPSSMVDWKNEILEENNVVAEWLWDAVRPQEGSFVQLAELRERYKKDHPHERAFK 881 Query: 730 RKRISTRTVTLNLKQKG-FIGGIKREKIEKEWKSKRII 766 K I R + KG ++ I+ K R + Sbjct: 882 NKDI-ERMINSAFNAKGAYVKDHHNYYIDGARKQGRRV 918 Score = 72.6 bits (176), Expect = 3e-10, Method: Composition-based stats. Identities = 57/373 (15%), Positives = 104/373 (27%), Gaps = 61/373 (16%) Query: 21 IPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEK---- 76 P+ G K P + W +E + G G +CG + D D Sbjct: 11 FPVNAGTKVPA-VKGW---PRLAESVAAKRGQGLGALCGEK-GGFFVVDCDLLKSDAPES 65 Query: 77 ---TANTFKDTFEILHG---TPIVRIGQKPKILIPFRMNKEGIKKK----------KTTE 120 + D + P VR + + F + + Sbjct: 66 FVAGTEAWLDLVGEMPAHVEYPQVRT-RSGGLHAYFAWDPRVKSSVQRYRVCDLFEGEAD 124 Query: 121 STQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEI 180 +DI+ G+Y V Y W H + P + E ++ LF Sbjct: 125 DRTVKIDIIADGRYIVCPPTP-----GYAW---LHNSQYVSPPPMPRELLDLLF-----P 171 Query: 181 TVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHE- 239 V +++ + + Y I A + DEW+ VV AV Sbjct: 172 EPADVDRARALCTTFRNVDKATLAYVVEGIPARRADV--------RDEWMRVVWAVADTA 223 Query: 240 TRGSSKGKEIARRWSKQGSTY-DEENFNYKWD------TFDFEEIGDTAKKRSTFTSLFY 292 + ++A +S++ Y E+ + TF S+ Sbjct: 224 AKNGYDALDVADAFSRRSHKYAGPEDVEAMYRQSNGAVTFGTLVHFSERGLPRDEGSVTL 283 Query: 293 HHGKLIPKGLLASRFSDAYNKAMFSIYKKGHF--LYTADTKAWYKKDKNNVYIWSLTLDK 350 + L+ L A D + + G+ L D K + +Y+ + Sbjct: 284 KNTDLLTSDLKAF---DDKVERIDDFEVNGNVINLVCGDLKIRIDINNLAIYV-NGQYRG 339 Query: 351 ITASIMNFLVSMK 363 + + F + Sbjct: 340 HLKTGLEFENDLS 352 >gi|329313511|gb|AEB87924.1| DNA primase [Staphylococcus aureus subsp. aureus T0131] Length = 750 Score = 157 bits (396), Expect = 7e-36, Method: Composition-based stats. Identities = 91/775 (11%), Positives = 221/775 (28%), Gaps = 96/775 (12%) Query: 27 DKRPQRLGKWEEQLLSSEKIDKLPA-----------CGFGFVCGVGEQPLYAFDIDSKDE 75 K P ++ +S+ A G GFV DID+ + Sbjct: 42 SKIPYSYAGYKANSTNSDTWTIFDAINSIYEQNDRYDGIGFVI-SEHDNYIVLDIDNAID 100 Query: 76 KTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYF 135 +++ + + L F + ++KK +++ ++ Sbjct: 101 ESSQITSNLALDMTKMTYCEKSPSGTGLHCFFKGELPKERKKKRSDL--DIELYDNARFM 158 Query: 136 VAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSK 195 + + + EE E KS + + Sbjct: 159 TMTGESI--GQREISDDQSLLNNLVERYFKQEELPETFIGNN--------ITNKSNLDDE 208 Query: 196 TWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHH----ETRGSSKGKEIAR 251 N + +I+ L E +++ + V +H+ ++ + + I Sbjct: 209 DVINIMLKSKQKDKISNLLQGNYEPYFDSPSE---AVQSLLHYLAFYTSKDKEQMERIFL 265 Query: 252 RWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAY 311 ++ + + N W + ++ + + ++ GK P L Sbjct: 266 NYNNLTDKWGSKRGNTTWGQLELDKAINNQSE------VYVKPGKENPSKL--------- 310 Query: 312 NKAMFSIYKKGHFLYTADTKAWYKK---DKNNVYIWSLTLDKITASIMNFLVSMKEDVFD 368 +W+ D N ++ T+ +V + D Sbjct: 311 ----------------IKKGSWWFYPNDDTNRKPKFNHTIMAKFICQEYHIVRYPDADSD 354 Query: 369 LS--EEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSS 426 + + K+ R N+++NS + ++ + S+ ++ Sbjct: 355 IYIYNTQTGIYELDKTGRKLRKIIRSLDNLKDNSVKEVRNYIVDMCDVRSVVNNE----- 409 Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEV-MDY 485 ++ ++G++ T T ++++ T + + + + E + Sbjct: 410 -YVAVKNGLVHYHTKIFRTFTPDIFVIDKLPTAYNPNAYDEFVDTTIQKVSCNHETTIMN 468 Query: 486 FTRCVGMALLGGNKAQRFIHIRGV-GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544 L + I++ G +GKST+ ++IK F + I++ + P Sbjct: 469 IYEMFAQVLYPKILIDKIIYLLGTVADNGKSTVQHMIKATFDSGGRISSVS-------PQ 521 Query: 545 EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604 + + + G ++ + + +A IK G + G Sbjct: 522 RLANNHFAGSSIYGKMANMVDDLPNIEIEDAGNIKTAITGGYLEIEQK-GKASQSVRMQT 580 Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFA------QKLETKYTLEAKKW 658 I N + + + +R +IPF+ + + + K Sbjct: 581 PFIIASNHYPKFKESGEQINKRLHIIPFNYSFKDDQERLSVTESTNKIYNKSAKEYVLKL 640 Query: 659 FLKGVKAYISKGLDVDIPEVCLKAKEEERQG-TDTYQAWIDDCCDIGENLWEESHSLAKS 717 + + + + P E + ++++ +I L K Sbjct: 641 AIDTLADMLQRDGSYITPNERSDKSAELFSDNNNPLSEYLENR-NIDFFLNNPGAETYKD 699 Query: 718 YSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLK 772 Y + + RK ++ + L + + KR E + K KLK Sbjct: 700 YKVWCHSN--FIRKPVNKDDF-ITLLENYYDIEWKRSVKYTENNVRWGFK--KLK 749 >gi|32455419|ref|NP_862725.1| hypothetical protein pUH24_08 [Synechococcus elongatus PCC 7942] gi|97589|pir||S20531 hypothetical protein F - Synechococcus sp. (strain PCC 7942) plasmid pUH24 gi|247792|gb|AAB21875.1| repA [Synechococcus elongatus PCC 7942] Length = 876 Score = 157 bits (396), Expect = 8e-36, Method: Composition-based stats. Identities = 48/282 (17%), Positives = 84/282 (29%), Gaps = 30/282 (10%) Query: 28 KRPQRLGKWEEQLLSSEKIDKL-----PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFK 82 K P W+ L + + G G + G L A D D A Sbjct: 39 KAPFDP-GWQNNPLDHAAVAERIRSDRRVTGIGLLTGPASGGLIAVDFDGPTAHEALPEG 97 Query: 83 DTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGH---LDILGCGQYFVAYN 139 T L T G+ + +++ +E T + L++ V Sbjct: 98 LTLTELPPTVAYTSGKPGRHQRLYQVPQERWAAIATQKLHSPDGDLLELRWNKLQSVIVG 157 Query: 140 IHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTN 199 HP+T Y W +++ + E ++ + + +D+++ S Sbjct: 158 QHPETG-AYRWVEGCAPWEI-EVAEAPPELLDAMER----------QDRQTAPKSYKPIV 205 Query: 200 NNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGST 259 + I + Y ++ W+ V MA+ + + WS Q S Sbjct: 206 SAPASDDEVAIARTMLAHVPASYADDYESWVAVGMALQSVSDA---LLDDWIAWSAQSSK 262 Query: 260 YD-EENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPK 300 +D KW +F I T L G PK Sbjct: 263 FDGNRKLERKWASFKGSGITIA-----TLAKLAKEGGYRPPK 299 >gi|115298601|ref|YP_762453.1| 94.9 kDa DNA primase/Poxvirus D5 family [Spodoptera frugiperda ascovirus 1a] gi|114416868|emb|CAL44699.1| 94.9 kDa DNA primase/Poxvirus D5 family [Spodoptera frugiperda ascovirus 1a] Length = 826 Score = 156 bits (395), Expect = 9e-36, Method: Composition-based stats. Identities = 66/338 (19%), Positives = 126/338 (37%), Gaps = 19/338 (5%) Query: 323 HFLYTADTKAWYKKDKNNVYIWSLT-LDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSK 381 +Y + W + I L + + +E +D++ + Sbjct: 343 RVMYQFNGNIWRPVRNDEALIRRELPLWFDKFNEYATDYVARLVASGRGDEIQDDDGDES 402 Query: 382 ---------SPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQ 432 + R + + + +N S + ++L + S +D + + + Sbjct: 403 NAANNLLNATRRKFKSIHRKCKNSAPQSGVITQVRALNTHDAGAYKSTKMDDNDSIVAFK 462 Query: 433 DGILDLETGQKVKPTKELYITKSTGTPFVEGEP-----SQEFLDLVSGYFESEEVMDYFT 487 + + +T + E I++ +V E + D + F EV +YF Sbjct: 463 NVVFCRDTLTVRRGKPEDMISRCLNCDYVPYEELADDVKKFVNDFLDSLFPDPEVREYFL 522 Query: 488 RCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAG 547 V G N ++++ GVG +GKS L+ + + G V +++ + + G Sbjct: 523 LSVCQIFRGFNIFKQYVVWTGVGNNGKSVLIRMFECLLGPLMVKLSKSVLVCNKM--DIG 580 Query: 548 KANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN--TYSESPASFT 605 NP + +L G R+ + E + +IN + K ++G AR Y A F Sbjct: 581 SVNPDMCKLQGVRLAVTDEIAGSADINVGQAKLLSGNGTFMARDLYMKSSEMEPIRAQFI 640 Query: 606 PFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASF 643 P IV N +R PD+A W+R ++PFD N F Sbjct: 641 PIIVCNALPSLREPDEAAWKRIHIVPFDSYFTNEPDGF 678 Score = 38.7 bits (88), Expect = 4.1, Method: Composition-based stats. Identities = 19/125 (15%), Positives = 37/125 (29%), Gaps = 8/125 (6%) Query: 189 KSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGS----S 244 KS + + +S E + ++W+ V A+ ++ Sbjct: 114 KSPGREVDTYGPEELKSFRAYLKKCISILNPER-SIDRNQWMRVYWALKDCSKRGLLEYD 172 Query: 245 KGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLA 304 + +S Q + Y+ + W D D R T+ SL + K P Sbjct: 173 EAFVCFDNFSSQWTHYNPQEIRDMWLKNDESIDDDR---RITYRSLLFDAHKDDPSTYAK 229 Query: 305 SRFSD 309 + Sbjct: 230 LTRAH 234 >gi|150019806|ref|YP_001312060.1| ATPase-like protein [Clostridium beijerinckii NCIMB 8052] gi|149906271|gb|ABR37104.1| ATPase-like protein [Clostridium beijerinckii NCIMB 8052] Length = 615 Score = 156 bits (394), Expect = 1e-35, Method: Composition-based stats. Identities = 97/557 (17%), Positives = 176/557 (31%), Gaps = 31/557 (5%) Query: 237 HHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGK 296 H S + + ++ K + ++ + K+ + + F Sbjct: 44 HKNLDIFSDAIKTFQNAENMFLNFEIVKTLSKLEQWNNLKEYSQTKESEVYYNAFIDKIT 103 Query: 297 LIPKGLLASRFSD-AYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASI 355 L + A NK F + G+ ++ DK W+ + + Sbjct: 104 GNIDKLKDISLIEFADNKQAFLSFVNGNLRALINST-----DKKRFAYWNGSTWSLLTDE 158 Query: 356 MNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIF 415 ++ D + S W + + K ++ S Sbjct: 159 ETQIIY--GDFIQKCNIELSAGQGSLKYEDWLELAKKITKWDTGRNTKEALDKIKRESSR 216 Query: 416 SITSDLLDSSSRFLGEQDG-ILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVS 474 I D ++ + DG I++L TG+ T+ I ++ V E S +F+ Sbjct: 217 IIDLKKYDLNNNIICSNDGKIINLNTGEIKNATRNDMILFTSEYNLVNKEESIKFMSEKM 276 Query: 475 GYFES---EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVI 531 + E +D+ + +L Q I + G G +GKS+L N+I+ F + Sbjct: 277 SIYLDIIGNERLDFILDLIAYKMLNR-SLQSAIFMIGAGATGKSSLKNIIRDLFKTESST 335 Query: 532 NAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARL 591 NR + L L +I SE E I++AK K++ +AR Sbjct: 336 IPYDYMTTMNRGNSDASRDDILASLDNKKIAFCSEGEEEKIISSAKFKKILSHADESARK 395 Query: 592 NYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLET 649 + S + N D A RR I + FDKPI R+A + + Sbjct: 396 TNEGLTNVSLQNLDIVFDTNAMPSFSTMDSAISRRLIFVKFDKPIPIEKRNADYYKDEIF 455 Query: 650 KYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWE 709 +F+ KA G ++IP+ + D+ ++ E + Sbjct: 456 PNFDYVFSYFV--YKAIDMIGKKLNIPDCVKNDTSTKLSEVDSLLSFSKRIITPFEGSYI 513 Query: 710 ESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGL 769 + + Y + E+E S + K + + II L Sbjct: 514 KYSEFEEEYLNFCEEEGLESVIPYSFQDTG--------------NKKNQTKRCNYIINLL 559 Query: 770 KLKPAFESVDDNSNIID 786 K K F S+ I D Sbjct: 560 KEKEGFSSIYKGKRISD 576 >gi|237744355|ref|ZP_04574836.1| phage/plasmid primase [Fusobacterium sp. 7_1] gi|229431584|gb|EEO41796.1| phage/plasmid primase [Fusobacterium sp. 7_1] Length = 457 Score = 156 bits (394), Expect = 1e-35, Method: Composition-based stats. Identities = 50/367 (13%), Positives = 128/367 (34%), Gaps = 32/367 (8%) Query: 423 DSSSRFLGEQDGILDLETGQK--VKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESE 480 + + ++G++++ + + T ++ T + + L+ +S + Sbjct: 109 EKDINHISVKNGLINITDDEIVLYEHTSKIVTTFYIDYDYNPNADYTDILNYMSELVGDD 168 Query: 481 E-VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539 E + +G L ++ + I+G +GKS + ++K FG+ + + DI+ Sbjct: 169 ESLTRILMEFLGYCLYPDCFLRKALVIKGDHRNGKSKFLEVLKIFFGDNNCCSLDIQDIV 228 Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599 + L +M I + + + + +K K++ G+ + + + Sbjct: 229 ---------SRFGLFGIMNKSINLGDDISGQYIGDDSKFKKVVAGNDVLIEQKGKDAF-T 278 Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR----DASFAQKLETKYTLE- 654 + N + A R I IPF + + +++ T +E Sbjct: 279 YKPTAKHIFSCNNMPRFDDKTGAVKDRLIFIPFPNVYSVENGNLNPHIVKEMTTNENMES 338 Query: 655 AKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714 L+ +K + +E + + +I++ I EN + + Sbjct: 339 LLVLALQSLKELLKNN-KFTYSYKSENCLDEFDKDKNPILYFIEE---IQENSYLRDKAF 394 Query: 715 -----AKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGL 769 A++Y +Y + K I+ + ++K IK ++ + ++ K Sbjct: 395 NNMPVAEAYDKYINFCQSNGFKAITKINFSKSIKAN-----IKNIDVKPYKNNGKVNKVF 449 Query: 770 KLKPAFE 776 ++ E Sbjct: 450 RILDQQE 456 >gi|225860023|ref|YP_002741532.1| DNA primase [Streptococcus pneumoniae Taiwan19F-14] gi|298229141|ref|ZP_06962822.1| DNA primase [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255123|ref|ZP_06978709.1| DNA primase [Streptococcus pneumoniae str. Canada MDR_19A] gi|298501767|ref|YP_003723707.1| DNA primase [Streptococcus pneumoniae TCH8431/19A] gi|225728196|gb|ACO24047.1| DNA primase [Streptococcus pneumoniae Taiwan19F-14] gi|298237362|gb|ADI68493.1| DNA primase [Streptococcus pneumoniae TCH8431/19A] Length = 521 Score = 156 bits (393), Expect = 2e-35, Method: Composition-based stats. Identities = 53/322 (16%), Positives = 106/322 (32%), Gaps = 22/322 (6%) Query: 388 NTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDL---LDSSSRFLGEQDGILDLETGQKV 444 N +R+ ++ +S+ S LE S + + LD R++ +G+ +++T + Sbjct: 117 NDIFRKLLLKYDSRLTSNKFFLELISYIRTETKMKPPLD-DYRYIPVANGVYNIKTHKLE 175 Query: 445 KPTKELYITKSTGTPFVEGEPSQ------EFLDLVSGY-FESEEVMDYFTRCVGMALLGG 497 + + IT T + +F + +EV+ + + A+ Sbjct: 176 EFSPNFVITSKIQTEYNPCARKPILDGWFDFDRWLEALAVNDKEVVALLWQVINEAINPN 235 Query: 498 NKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLM 557 ++ + + G G +GK T L++ G + N + + L L Sbjct: 236 RTRKKMVLMVGDGNNGKGTFQALLENLIGRSNISNLKPDQFGKE---------FYLGALE 286 Query: 558 GSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVR 617 G I + + + + + GD + E+ N R Sbjct: 287 GKVCNIGDDISNKYLDEVSDLMSVISGDPVQVNKKSLQP-VEARFRLLCIFSGNDLPRAR 345 Query: 618 NPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPE 677 N W+RR +IPF + K E +W L V PE Sbjct: 346 NKTMGWYRRLCIIPFRADFNGQKERHEIKDRFIKNKELLEWVLFKVLNM-PDFDSFIEPE 404 Query: 678 VCLKAKEEERQGTDTYQAWIDD 699 K + + D + W+++ Sbjct: 405 AVQKMLSKYKNDNDYIKVWVEN 426 >gi|46202140|ref|ZP_00053695.2| COG1197: Transcription-repair coupling factor (superfamily II helicase) [Magnetospirillum magnetotacticum MS-1] Length = 1185 Score = 156 bits (393), Expect = 2e-35, Method: Composition-based stats. Identities = 55/288 (19%), Positives = 101/288 (35%), Gaps = 36/288 (12%) Query: 10 AKQAIHNGFKLIPLRLGDKRPQRLGKW--EEQLLSSEKIDKLP------ACGFGFVCGVG 61 A G+ +IP+ G KRP W + L+ +++ + G G + Sbjct: 14 AVAYRRAGYYVIPVDPGTKRP-DQRGWPIHARNLTVKQVAEWSIDPCTAKYGIGVL---- 68 Query: 62 EQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKE---------- 111 A DID + + A+ E + G VRIG PK L + ++ Sbjct: 69 ALATPAIDIDVRHPEAADEIDAAAERILGPAPVRIGAWPKRLRVYSGPEDMPYTSVGECA 128 Query: 112 GIKKKKTTESTQG-HLDIL-GCGQYFVAYNIHPKTKKEYTW-TTPPHRFKVEDTPLLSEE 168 + + ++++L G G+ FVA IHP T K Y W + + + ++ E Sbjct: 129 FPGDDTAAKGYKWHNVEVLSGGGKQFVAAAIHPGTGKPYQWPSGDLLAWPHDRLTAITAE 188 Query: 169 DVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYT-----NREITAFLSCFGEEFYN 223 VE + I K ++ + + T N ++ + Sbjct: 189 MVEAFLAEVRVILARHGAVSKGG---RSAITSGGDRRTSVTGNNVGLSRVAEALAHVPND 245 Query: 224 GSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDT 271 + +W+ A+ G ++ R WS++ YD + W Sbjct: 246 ADYHDWVRYAYALKGAF--GEDGFDLWRDWSERSDKYDADYTETTWAG 291 >gi|282917366|ref|ZP_06325120.1| DNA primase [Staphylococcus aureus subsp. aureus D139] gi|282318718|gb|EFB49074.1| DNA primase [Staphylococcus aureus subsp. aureus D139] Length = 750 Score = 156 bits (393), Expect = 2e-35, Method: Composition-based stats. Identities = 91/775 (11%), Positives = 221/775 (28%), Gaps = 96/775 (12%) Query: 27 DKRPQRLGKWEEQLLSSEKIDKLPA-----------CGFGFVCGVGEQPLYAFDIDSKDE 75 K P ++ +S+ A G GFV DID+ + Sbjct: 42 SKIPYSYAGYKASSTNSDTWTIFDAINSIYEQNDRYDGIGFVI-SEHDNYIVLDIDNAID 100 Query: 76 KTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYF 135 +++ + + L F + ++KK +++ ++ Sbjct: 101 ESSQITSNLALDMTKMTYCEKSPSGTGLHCFFKGELPKERKKKRSDL--DIELYDNARFM 158 Query: 136 VAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSK 195 + + + EE E KS + + Sbjct: 159 TMTGESI--GQREISDDQSLLNNLVERYFKQEELPETFIGNN--------ITNKSNLDDE 208 Query: 196 TWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHH----ETRGSSKGKEIAR 251 N + +I+ L E +++ + V +H+ ++ + + I Sbjct: 209 DVINIMLKSKQKDKISNLLQGNYEPYFDSPSE---AVQSLLHYLAFYTSKDKEQMERIFL 265 Query: 252 RWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAY 311 ++ + + N W + ++ + + ++ GK P L Sbjct: 266 NYNNLTDKWGSKRGNTTWGQLELDKAINNQSE------VYVKPGKENPSKL--------- 310 Query: 312 NKAMFSIYKKGHFLYTADTKAWYKK---DKNNVYIWSLTLDKITASIMNFLVSMKEDVFD 368 +W+ D N ++ T+ +V + D Sbjct: 311 ----------------IKKGSWWFYPNDDTNRKPKFNHTIMAKFICQEYHIVRYPDADSD 354 Query: 369 LS--EEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSS 426 + + K+ R N+++NS + ++ + S+ ++ Sbjct: 355 IYIYNTQTGIYELDKTGRKLRKIIRSLDNLKDNSVKEVRNYIVDMCDVRSVVNNE----- 409 Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEV-MDY 485 ++ ++G++ T T ++++ T + + + + E + Sbjct: 410 -YVAVKNGLVHYHTKIFRTFTPDIFVIDKLSTAYNPNAYDEFVDTTIQKVSCNHETTIMN 468 Query: 486 FTRCVGMALLGGNKAQRFIHIRGV-GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544 L + I++ G +GKST+ ++IK F + I++ + P Sbjct: 469 IYEMFAQVLYPKILIDKIIYLLGTVADNGKSTVQHMIKATFDSGGRISSVS-------PQ 521 Query: 545 EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604 + + + G ++ + + +A IK G + G Sbjct: 522 RLANNHFAGSSIYGKMANMVDDLPNIEIEDAGNIKTAITGGYLEIEQK-GKASQSVRMQT 580 Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFA------QKLETKYTLEAKKW 658 I N + + + +R +IPF+ + + + K Sbjct: 581 PFIIASNHYPKFKESGEQINKRLHIIPFNYSFKDDQERLSVTESANKIYNKSAKEYVLKL 640 Query: 659 FLKGVKAYISKGLDVDIPEVCLKAKEEERQG-TDTYQAWIDDCCDIGENLWEESHSLAKS 717 + + + + P E + ++++ +I L K Sbjct: 641 AIDTLADMLQRDGSYITPNERSDKSAELFSDNNNPLSEYLENR-NIDFFLNNPGAETYKD 699 Query: 718 YSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLK 772 Y + + RK ++ + L + + KR E + K KLK Sbjct: 700 YKVWCHSN--FIRKPVNKDDF-ITLLENYYDIEWKRSVKYTENNVRWGFK--KLK 749 >gi|237651063|ref|ZP_04525315.1| DNA primase [Streptococcus pneumoniae CCRI 1974] gi|237821176|ref|ZP_04597021.1| DNA primase [Streptococcus pneumoniae CCRI 1974M2] Length = 496 Score = 156 bits (393), Expect = 2e-35, Method: Composition-based stats. Identities = 53/322 (16%), Positives = 107/322 (33%), Gaps = 22/322 (6%) Query: 388 NTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDL---LDSSSRFLGEQDGILDLETGQKV 444 N +R+ ++ +S+ S LE S + + LD R++ +G+ +++T + Sbjct: 92 NDIFRKLLLKYDSRLTSNKFFLELISYIRTETKMKPPLD-DYRYIPVANGVYNIKTHKLE 150 Query: 445 KPTKELYITKSTGTPFVEGEPSQ------EFLDLVSGY-FESEEVMDYFTRCVGMALLGG 497 + + IT T + +F + +EV+ + + A+ Sbjct: 151 EFSPNFVITSKIQTEYNPCARKPILDGWFDFDRWLEALAVNDKEVVALLWQVINEAINPN 210 Query: 498 NKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLM 557 ++ + + G G +GK T +L++ G + N + + L L Sbjct: 211 RTRKKMVLMVGDGNNGKGTFQSLLENLIGRSNISNLKPDQFGKE---------FYLGALE 261 Query: 558 GSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVR 617 G I + + + + + GD + E+ N R Sbjct: 262 GKVCNIGDDISNKYLDEVSDLMSVISGDPVQVNKKSLQP-VEARFRLLCIFSGNDLPRAR 320 Query: 618 NPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPE 677 N W+RR +IPF + K E +W L V PE Sbjct: 321 NKTMGWYRRLCIIPFRADFNGQKERHEIKDRFIKNKELLEWVLFKVLNM-PDFDSFIEPE 379 Query: 678 VCLKAKEEERQGTDTYQAWIDD 699 K + + D + W+++ Sbjct: 380 AVQKMLSKYKNDNDYIKVWVEN 401 >gi|295101705|emb|CBK99250.1| phage/plasmid primase, P4 family, C-terminal domain [Faecalibacterium prausnitzii L2-6] Length = 457 Score = 155 bits (392), Expect = 2e-35, Method: Composition-based stats. Identities = 48/395 (12%), Positives = 124/395 (31%), Gaps = 26/395 (6%) Query: 378 KNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILD 437 + + K + + ++ + + D + +G L Sbjct: 53 DDLPLRGEIYEKLKCCAVNNIPRKITNILEVMKLAAHVEDFAPEADR----VHLANGTLK 108 Query: 438 LETGQKVKPTKELYITKSTGTPFVEGEPSQ-EFLDLVSGYFESEEVMDYFTRCVGMALLG 496 L+ G + + + P+ +L + G +E+ + +G +L+ Sbjct: 109 LD-GSFTEGRPT-IVRSRLPVAYRPDAPAPVRWLSFLDGLLYTED-IPTLQEFIGYSLIP 165 Query: 497 GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRL 556 NK QR + I+G GG GKS + ++ FG S++ + + + L Sbjct: 166 SNKGQRMMVIKGNGGEGKSQIGAVLGALFG---------SNMKDGSIGKISENRFARADL 216 Query: 557 MGSRIVIISETNENDEINAAKIKQM-TGGDCMTARLNYGNTYSESPASFTPFIVPNKHLF 615 + + + +K + T + +Y + Sbjct: 217 EHILLCVDDDMRMEALRQTNYVKSIVTAQGKIDLERKGKQSYQGWMFARLLAFSNGDLQA 276 Query: 616 VRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDV 673 + + D ++RR +V+ + A R D A+K+ W +G++ + Sbjct: 277 LYDRSDGFYRRQLVLTTKEKPAGRVDDPDLAEKM-KAEVEGIFLWAFEGLQRLAANNFKF 335 Query: 674 DIPEVCLKAKEEERQGTDTYQAWIDD--CCDIGENLWEESHSLAKSYSEYREQELNYDRK 731 + +E ++ + +++ + + S L + Y + E+ Sbjct: 336 TESQRTRDNREAVKRDNNNVFDFLESEGYIRLKADCTISSKDLYEIYRMWCEENNLT--- 392 Query: 732 RISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRII 766 + R+ + ++ ++ +R+ Sbjct: 393 PLKRRSFSESVIANQSKYNLEYCNKITNAAGRRVW 427 >gi|94994243|ref|YP_602341.1| DNA primase [Streptococcus phage 10750.2] gi|94547751|gb|ABF37797.1| DNA primase [Streptococcus phage 10750.2] Length = 306 Score = 155 bits (392), Expect = 2e-35, Method: Composition-based stats. Identities = 43/278 (15%), Positives = 93/278 (33%), Gaps = 16/278 (5%) Query: 478 ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537 ++++ + V +L G ++ I G G GK T +I G + V + + Sbjct: 3 GDKDLVQLLWQVVAASLNGNYSYRKSIWFVGDGNDGKGTFQQMISNLVGFKNVAPLKLNQ 62 Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA-AKIKQMTGGDCMTARLNYGNT 596 + L + G ++I + ++ + + G+ ++ N Sbjct: 63 FSE---------RFGLAIIEGKTVIIGDDVQAGIYVDESSNFNSVVTGEPVSIEKKGENP 113 Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAK 656 Y N +N + +RR I+IPF K ++ + ++A K + E Sbjct: 114 YMAI-FKKNVIQSTNGMPVFKNKSNGTYRRIIIIPFKKTFSSAEDNWAIKDDYINRKEVL 172 Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAK 716 ++ L K+ P+V E ++ +T ++++ + E+ L Sbjct: 173 EYVL--WKSINLDFDKFYEPKVTQDRMREFKEENNTILKFLNEYLEDVESTRLPVRFLWD 230 Query: 717 SYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754 Y + + K L G K + Sbjct: 231 VYQSWCTENGVTKPK---KSNFEKELAINLPDGWEKTK 265 >gi|253999774|ref|YP_003051837.1| ATPase-like protein [Methylovorus sp. SIP3-4] gi|253986453|gb|ACT51310.1| ATPase-like protein [Methylovorus sp. SIP3-4] Length = 554 Score = 155 bits (392), Expect = 2e-35, Method: Composition-based stats. Identities = 84/534 (15%), Positives = 178/534 (33%), Gaps = 59/534 (11%) Query: 255 KQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKA 314 K T E K I K++T L + + + A ++ Sbjct: 68 KDEPTAKEIEQELKIQKQVEANILKDKVKKATKEELAKINPVSSKREMTAPPTIESI--Y 125 Query: 315 MFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPE 374 + LY D Y++D N+Y W+ ++ +DV Sbjct: 126 LDRTLADNKTLYIDD----YRRDVGNIYKWTSEYWEV---------QNPDDVRAEITNWL 172 Query: 375 DNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGE--Q 432 NN N++ + NS +EA + + + + + + +L Sbjct: 173 KNNHNTE-----------LSSRNVNSIFNVFYFKMEAFNKVNTNNLYIPTKTHWLVVDQT 221 Query: 433 DGILD-LETGQKVKPTKELYITKSTGTPFVEGEP--SQEFLDLVSGYFESEEVMDYFTRC 489 G ++ ++ + + T ++ I P+ E F ++ + Sbjct: 222 TGAIEAIKPNKSIPLTYQINIIIKQAGPYTPKETAVDSLFSKFINSSLPELDKQAVMQEF 281 Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549 G L KA +F+ ++G GG+GKS + ++ N + + + + Sbjct: 282 SGYCLTSCTKAHKFLFMKGGGGNGKSVHIAIMSTLIPNSVSVRMDTIGLYND-------- 333 Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609 L+ ++ +ET++ N K T GD + R + S +V Sbjct: 334 -----NLVDKNVIFTTETHKGG-FNEELFKAATAGDKVEIRGIRKDKQS-IKLIAKWILV 386 Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDKPIANRDA---SFAQKLETKYTLEAKKWFLKGVKAY 666 N + + RR I+I +++ N + Q++ + W L G++ Sbjct: 387 GNNDFRIEDFSSGIARRMIIINWNESFTNSKDIVRNLEQRIVDEELDIVLDWCLIGLQRL 446 Query: 667 ISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCC-DIGEN--LWEESHSLAKSYSEYRE 723 IS L+ E KA + D + + +D + + +L + +Y Sbjct: 447 ISNKLEFTRCEESEKALFDFLNHADKVRMFANDYQYEYSPEHKHFITKENLYNKFLDYVL 506 Query: 724 QELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFES 777 + ++++ + +K + K K + + KR++ LKP + Sbjct: 507 KNG---YEKLNAVNFWIRMKNI-YPEIEKDIKSDIKRDGKRVVF---LKPKLQE 553 >gi|257076858|ref|ZP_05571219.1| virulence-associated protein E [Ferroplasma acidarmanus fer1] Length = 980 Score = 155 bits (392), Expect = 2e-35, Method: Composition-based stats. Identities = 105/826 (12%), Positives = 229/826 (27%), Gaps = 94/826 (11%) Query: 10 AKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKL--PACGFGFVCGVGEQPLYA 67 AK+ G + P + G K P + +++ K ++ P G G Sbjct: 14 AKKYTKAGLPIFPTKPGSKEPDTVHGFKDATNDFNKFMQMHRPGDGIAMPTGAST--YII 71 Query: 68 FDIDSKDEKTANTFKDT-------------------FEILHGTPIVRIGQKPKILIPFRM 108 D D ++ K E +V Q FR Sbjct: 72 IDPDVAKDENKKPIKKDGKVIRIGLDNLCKQFNLLGLEDSKLQTLVTETQSGGDHFWFRN 131 Query: 109 NKEGIKKKKTTESTQGHL---DILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLL 165 K KK + + DI G Y V T+ ++ ++ P + Sbjct: 132 PKGKPPLKKMQGNENNGIDKVDIQAEGAYVVLPP----TEGKFGKYKFITDVPFDEIPEM 187 Query: 166 SEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQY-TNREITAFLSCFGEEFYNG 224 E + ++ + + +N + A ++ Sbjct: 188 PLEFYNFFAGTEKKSENDADLIEYGGEYHPSNFKFDNEKTPLLISTIADITKRSNTGIGA 247 Query: 225 SHDEWIPVVMAVHHETRGSSK----------GKEIARRWSKQGSTYDEENFNYKWDTFDF 274 +I +A H+ + G E TY + K Sbjct: 248 EMTMYITGTLAFHNFEEPHALAVLKKVANINGYEKTDWIPIVKDTYKKFGTKDKNGNQHK 307 Query: 275 EEIGDTAKKRSTFTSLFYHHGKLIPKG---LLASRFSDAY-----------NKAMFSIYK 320 KK F+++ I K L D K + I + Sbjct: 308 IRGLPWLKKLLAEHKEFWNNYDEIIKNLEILFPENLYDIAERMLNLARVGPAKVVSIILE 367 Query: 321 KGHFLYTADT----KAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDN 376 H + +D + Y L +A I + ++ + D Sbjct: 368 TEHVVTKSDNTTDLEEIYLYHDGFYARGEEELKIESARIYTDAWNKALELANKLAPKTDE 427 Query: 377 NKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSL-EAGSIFSITSDLLDSSSRFLGEQDGI 435 + + + ++ +E ++L + D + S + +G Sbjct: 428 LSPDTTKAIFEIRESMKKVIERGPTRSQINETLAQLRLATYTNPDKFNPDSH-IPFLNGY 486 Query: 436 LDLETGQKVKPTKELYITKSTGTPFVEG-------EPSQEFLDLVSGYFESEEVMDYFTR 488 L+ +T + +L + S +F ++ FE + + + Sbjct: 487 LNTKTWKLEPHNPDLIYLWRIEANLNADKLDVVRLQDSPKFSKFINETFEDRD-IPLILQ 545 Query: 489 CVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGK 548 G + Q + + G GK +L+ ++K Y + IM + Sbjct: 546 YFGYTMYPDFPRQMVLFMTGRERVGKGSLVRILKKMNPYGYGSISFEKLIMNDN------ 599 Query: 549 ANPSLIRLMGSRIVIISET----NENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604 + + G +++ +E I+ I ++ GGD + + + Sbjct: 600 -RFAFQGIEGKNLLVDTEIMRYHRRGQTIDYRNINKLFGGDVIDLEKKGVTPT-DYISKA 657 Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPF-DKPIA--NRDASFAQKLETKYTLEAKKWFLK 661 + N + D+ + R I++ D I R A+ + ++ + Sbjct: 658 KGIFLGN-LPLPKVTDEPFLARVILVKTKDHKIEQGERIANIEDVILSEERDTIATLLVH 716 Query: 662 GVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEY 721 + + + + E +D + + DD D + +++ S+ + Sbjct: 717 HLMELSANNWNFTNEMTTDETVELWNLLSDIVEFYTDDEIDDVPEMEIPVNTVYDSFKRW 776 Query: 722 REQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIK 767 + + ++ +T T + G +K + +RI Sbjct: 777 SKAKG---IPLMAQQTFTK------YFGKNYIKKRIRGENKERIYV 813 >gi|46201836|ref|ZP_00054256.2| COG3378: Predicted ATPase [Magnetospirillum magnetotacticum MS-1] Length = 478 Score = 155 bits (392), Expect = 2e-35, Method: Composition-based stats. Identities = 54/376 (14%), Positives = 115/376 (30%), Gaps = 40/376 (10%) Query: 419 SDLLDSSSRFLGEQDGILDLET---GQKVKPTKELYITKSTGTPFVEGEPSQ-----EFL 470 D + + G + ++ + ++ G + Sbjct: 114 EDFFARAPIGINCASGFIRFMGEGLPVLEPHHQDHRSRHTLPGQWLPGAEAHPTAGSLLA 173 Query: 471 DLVSGYFESEE----VMDYFTRCVGMALLG---GNKAQRFIHIRGVGG-SGKSTLMNLIK 522 L+ G F++++ +D G A LG + R I ++G +GKS +++LI+ Sbjct: 174 RLLDGVFKADDDAAQKVDLLAEVAGSAALGYATKLRQPRAIILKGETAENGKSQILDLIR 233 Query: 523 YAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMT 582 + + A + R ++ L+G + E + + I + K + Sbjct: 234 SLLPANAISSVTAGRMGDERH---------IVGLVGKLLNAADELSSSTAIASDTFKAII 284 Query: 583 GGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV-RNPDDAWWRRYIVIPFDKPIANRDA 641 G+ + R Y + E N D RR V+ F++ I + Sbjct: 285 TGEPVQGRDVYK-SRIEFRPVAQHLFATNTLPVFQGGMDRGVQRRLQVVSFNRVIPTEER 343 Query: 642 --SFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD 699 + +++ + W + G I +P+ A + G D AW+ + Sbjct: 344 IEAIGRRIGEEEPDLLLAWAVAGAARLIRNK-GFTLPQSSRTAMNDWLFGADPVLAWLSE 402 Query: 700 CCDI----GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755 ++ + + + E+ E DR S + Sbjct: 403 QVEVRPLYNPEARVATRHAFERFREWAIAEGFSDRTLPSINGFVQRITAN------TTGV 456 Query: 756 IEKEWKSKRIIKGLKL 771 + R G+ L Sbjct: 457 EYRRTGQGRFFFGMVL 472 >gi|295105016|emb|CBL02560.1| phage/plasmid primase, P4 family, C-terminal domain [Faecalibacterium prausnitzii SL3/3] Length = 457 Score = 155 bits (391), Expect = 3e-35, Method: Composition-based stats. Identities = 51/395 (12%), Positives = 120/395 (30%), Gaps = 26/395 (6%) Query: 378 KNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILD 437 + F K + + ++ + D + +G L Sbjct: 52 DDLPLRGEIFEELKYCAVNNIPRKISNIIEIMKLAAHVEDFPPEQDR----IHLANGTLM 107 Query: 438 LETGQKVKPTKELYITKSTGTPFVEGEPSQ-EFLDLVSGYFESEEVMDYFTRCVGMALLG 496 L+ G + + + P +L ++G E + +G L+ Sbjct: 108 LD-GTFTEGKP-DIVRNRLPVFYRPDTPKPVLWLSFLNGLL-YPEDIPTLQEFIGYCLIP 164 Query: 497 GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRL 556 NK QR + I+G GG GKS + ++ G S + + + + L Sbjct: 165 SNKGQRMMVIKGNGGEGKSQIGAVLGQMLG---------SSMKDGSIGKISENRFARADL 215 Query: 557 MGSRIVIISETNENDEINAAKIKQM-TGGDCMTARLNYGNTYSESPASFTPFIVPNKHLF 615 + + + +K + T M +Y + Sbjct: 216 EHILLCVDDDMRMEALRQTNYVKSIVTAQGKMDLERKGKQSYQGWMFARLLAFSNGDLQA 275 Query: 616 VRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDV 673 + + D ++RR +V+ + A R D AQK+ W +G++ ++ Sbjct: 276 LYDRSDGFYRRQLVLTTKEKPAGRMDDPDLAQKM-KAEVEGIFLWAFEGLQRLVANNFKF 334 Query: 674 DIPEVCLKAKEEERQGTDTYQAWIDD--CCDIGENLWEESHSLAKSYSEYREQELNYDRK 731 E +E ++ + +++ + + S L + Y + E+ Sbjct: 335 TESERTKTNRESVKRDNNNIFDFMESEGYIRLKADASISSKELYEIYRMWCEEN---SLP 391 Query: 732 RISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRII 766 + +R+ + ++ ++ +R+ Sbjct: 392 PLKSRSFSDSVVANLSRYNLEHTNKITNSAGRRVW 426 >gi|260889939|ref|ZP_05901202.1| putative phage DNA primase [Leptotrichia hofstadii F0254] gi|260860545|gb|EEX75045.1| putative phage DNA primase [Leptotrichia hofstadii F0254] Length = 683 Score = 155 bits (391), Expect = 3e-35, Method: Composition-based stats. Identities = 65/399 (16%), Positives = 140/399 (35%), Gaps = 29/399 (7%) Query: 379 NSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDL 438 + K + +T ++ + + + E F+ + + R+ +GILD Sbjct: 302 DRKEGIYTTDTAVLKKAMFDLIPSLKINNKRETMDTFNTLAREGKVNYRYRAVANGILDT 361 Query: 439 ETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEE-VMDYFTRCVGMALL-G 496 + + + T ++ T T + G +++ ++ + + + +G L Sbjct: 362 KEFKLLDFTPDIVCTSKIPTNYNPGASTEKADKIIGSFVRDDPFKKNLICEMLGYGLYED 421 Query: 497 GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRL 556 N +F I G +GKS + FG+ +++ + D+ + + L Sbjct: 422 KNLIGKFFIIVGDKENGKSVFLRYTANTFGDFNIMSLDLKDL---------GSRFATTLL 472 Query: 557 MGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV 616 + + + N +K++ G+ M SES + NK V Sbjct: 473 RDKIFNLGDDISGNYIDETDVLKKVVTGEKMVVEEKGKQGRSES-YNIALIFTANKTPRV 531 Query: 617 RNPDDAWWRRYIVIPFDKPI----ANRDASFAQKLE-TKYTLEAKKWFLKGVKAYISKGL 671 ++P A RR +++ FD RD QK++ + K ++G+K +G Sbjct: 532 KDPTGAVLRRAMLVIFDNDFSVGSPARDNKILQKIKNEEEREGLLKLAVEGLKRLSERGY 591 Query: 672 DVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLW---EESHSLAKSYSEYREQELNY 728 + E +K + + + + + + + W + + + SY + Q Sbjct: 592 -FEENEETIKNLIDFDFDNNPIKEFDYEMRTLKTDGWYIGKTADEVHSSYIFWCSQN--- 647 Query: 729 DRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIK 767 D + + R T K K E K +RI Sbjct: 648 DIRPLRKRNFTKEFKAL-----HKTELKRKRIDGERIFV 681 >gi|228962689|ref|ZP_04123982.1| hypothetical protein bthur0005_59570 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228796994|gb|EEM44311.1| hypothetical protein bthur0005_59570 [Bacillus thuringiensis serovar pakistani str. T13001] Length = 195 Score = 155 bits (390), Expect = 3e-35, Method: Composition-based stats. Identities = 46/204 (22%), Positives = 72/204 (35%), Gaps = 22/204 (10%) Query: 594 GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF--DKPIANRDASFAQKLETKY 651 Y E F F N + D+ WRR +IPF + P RD +KL Sbjct: 2 RQEYFEFVPDFKVFFTTNHKPIIGGLDEGIWRRVKLIPFHLNLPAHKRDKRLPEKLSL-E 60 Query: 652 TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIG----ENL 707 W ++G + +GL P +A ++ D ++ + C I E + Sbjct: 61 MPGILNWAIEGCMKWKKEGLK--DPRAVAEATGRYQEDMDILGPFLSEVCYIDEPKNEAI 118 Query: 708 WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIK 767 E+ L Y + + + R+ L+ KGF K +K + Sbjct: 119 KMEAKELYNVYETWC---FRSGERALGNRSFYRMLETKGFGKT-------KGTGNKTFLT 168 Query: 768 GLKL---KPAFESVDDNSNIIDFK 788 G+ L KPA + V N FK Sbjct: 169 GITLFERKPANKRVIKNEENSHFK 192 >gi|312864227|ref|ZP_07724461.1| phage/plasmid primase, P4 family, C-terminal domain protein [Streptococcus vestibularis F0396] gi|311100228|gb|EFQ58437.1| phage/plasmid primase, P4 family, C-terminal domain protein [Streptococcus vestibularis F0396] Length = 507 Score = 155 bits (390), Expect = 4e-35, Method: Composition-based stats. Identities = 44/281 (15%), Positives = 96/281 (34%), Gaps = 18/281 (6%) Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ------EFLDLVSGY- 476 S + ++GI +L T + + IT T + +F + + G Sbjct: 143 QESYLIPVRNGIFNLHTKELEPFIPKHIITTKIATAYNPEAQKPLLGGWFDFDEWLDGLA 202 Query: 477 FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEAS 536 +E+ + + A+ ++ + + G G +GK T L++ G + + N + + Sbjct: 203 CGDKEITTLLWQVMNEAINPNRTRKKMVVLTGDGNNGKGTFQALLENLIGKENISNLKPN 262 Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNT 596 + L L G I + ++ + + + + GD + + Sbjct: 263 QFQEQ---------HLLSALNGKVCNIGDDISDKYLDSVSDLMSIVTGDTIQVNPKHLQP 313 Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAK 656 Y E+ N RN W+RR ++PF+ K E + E Sbjct: 314 Y-EASYRLLCIFSGNGIPRSRNKSQGWYRRLCIVPFNADFNGTVERPEIKDEFIKSKELL 372 Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWI 697 +W L + ++ +E ++ D Y +++ Sbjct: 373 EWVLFKILNM-AEFDRFIEANAVKDMLDEYKEDNDFYYSFV 412 >gi|238027975|ref|YP_002912206.1| phage/plasmid primase P4, C-terminal [Burkholderia glumae BGR1] gi|237877169|gb|ACR29502.1| Phage/plasmid primase P4, C-terminal [Burkholderia glumae BGR1] Length = 519 Score = 154 bits (389), Expect = 6e-35, Method: Composition-based stats. Identities = 64/464 (13%), Positives = 136/464 (29%), Gaps = 78/464 (16%) Query: 342 YIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSK 401 + W+ + + ++++ + + + +++ E + Sbjct: 47 FRWNGVFWEAQRDVALEQDALRQL---------------QKLEPAKYSASKARSMVETAI 91 Query: 402 AKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILD-LETGQKVKPTKELYITKSTGTPF 460 + S+ + +DG+L+ L +G + + Sbjct: 92 TRLAGHKPLPVPQK--------STGVLVPLRDGLLEVLPSGVVKAHKPAPHFGVTHAINA 143 Query: 461 V---------------EGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIH 505 P F + S + DY C G L N + I Sbjct: 144 SIDWTRVGAEGTYGLLPMTPDSRFGRFIMQVQPSPAMRDYLAECFGSTLSTMNVQ-KAII 202 Query: 506 IRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIIS 565 + G G +GKS + ++ + N A D+ + + L+ + +V +S Sbjct: 203 LEGTGANGKSLCLQILSA-----FHANPVAFDLSRLDGE------FNTEPLVHATLVTVS 251 Query: 566 E-TNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWW 624 E IN K D ++ + + N+ + + + Sbjct: 252 EAPPRKRPINENLFKAWVARDPVSVNRKNRVP-LTVKPRASWVLAMNEAMGFSDMSHGFL 310 Query: 625 RRYIVIPFDKPI--ANRDASFAQKLETK--YTLEAKKWFLKGVKAYISKGLDVDI---PE 677 RR +PF + I ++ + + A W L G+ A +G + PE Sbjct: 311 RRIANVPFTQTIRAEDQIPDLDRLITENPDEMAIALDWLLAGLIALTKRGRFMSEDELPE 370 Query: 678 VCLKAKEEERQGTDTYQAWIDDCCDIG-----ENLWEESHSLAKSYSEYREQELNYDRKR 732 K R+ DT W D D G N W + + ++Y ++ R Sbjct: 371 EVRSHKVSLRKSNDTALEW-ADVVDAGQDPAYPNQWADKVVVYRAYRDFCADNG---RHP 426 Query: 733 ISTRTVTLNLKQ---------KGFIGGIKREKIEKEWKSKRIIK 767 + L++ G +R + R+++ Sbjct: 427 VEANEFWKRLRRDLQVSKGIDIGAAENNRRAPKDSTGNRARLVR 470 >gi|109644386|ref|YP_659416.1| putative P4-specific DNA primase [Haloquadratum walsbyi DSM 16790] gi|109627353|emb|CAJ51112.1| putative P4-specific DNA primase [Haloquadratum walsbyi DSM 16790] Length = 649 Score = 154 bits (388), Expect = 6e-35, Method: Composition-based stats. Identities = 51/322 (15%), Positives = 105/322 (32%), Gaps = 32/322 (9%) Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVM 483 + +G+L+L TG+ + E Y + + + + + E Sbjct: 228 EDPH-VCVDNGVLNLLTGELKPHSPEYYFVDRIPVRYKSNADTSVYERYFDDWTQRETDK 286 Query: 484 DYFTRCVGMALLG--GNKAQRFIHIRGVGGSGKSTLMNLIKYAFG-----NQYVINAEAS 536 VG AL+ + ++F+ + G +GKS +K Q V N + S Sbjct: 287 RTLIEMVGHALVPDANERYKKFLMLTGDTNNGKSVFFRCVKALLNGPDGTEQNVSNVKLS 346 Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNT 596 + R + + G+ + E + N A +K +TGGD + + Sbjct: 347 KLSTQRFANSS--------VYGNMANVAGEIDGKKIRNTASLKDITGGDSVEVEPKGTRS 398 Query: 597 YSESPASFTPFIVPNKHLFVRNPDD-AWWRRYIVIPFDKPIAN-------------RDAS 642 + E + T N + + D A R + + + ++ Sbjct: 399 FFE-TINATMMFAANDPPVIGDRDKQAIASRLVPVNLPYSFVDNPTENDPFEKQRRPESE 457 Query: 643 FAQKLETKY-TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCC 701 +L T + ++GV+ DV +PE + + D + + +C Sbjct: 458 LEDELLTDEALSGLLRLAVEGVQRLEDNSGDVSLPESPRERLRRYERTADPMRQFGAECL 517 Query: 702 DIGENLWEESHSLAKSYSEYRE 723 + + + Y E+ E Sbjct: 518 RNEAGEYVVKEHITEIYEEWTE 539 >gi|260102307|ref|ZP_05752544.1| hypothetical protein HMPREF0518_1038 [Lactobacillus helveticus DSM 20075] gi|260083885|gb|EEW68005.1| hypothetical protein HMPREF0518_1038 [Lactobacillus helveticus DSM 20075] Length = 508 Score = 154 bits (388), Expect = 7e-35, Method: Composition-based stats. Identities = 80/525 (15%), Positives = 166/525 (31%), Gaps = 59/525 (11%) Query: 282 KKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNV 341 KK S F + +I + + N +I D K+ Sbjct: 16 KKDSNFKARPSWAQPIIDQYGNTRGWRAKPNLLAKTILDDNEMFSVVDDNG-----KSTS 70 Query: 342 YIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSK 401 YI++ + + ++ +++ + N+ N Sbjct: 71 YIYNGDYWEPVDLAG---------IRNIVASYFYDDEYRHAY-----------NLLSNKV 110 Query: 402 AKSTAQSLEAGSIFSITSDLLDS----SSRFLGEQDGILDLETGQKVKPTKELYITKSTG 457 TA + A D D + ++ ++ T Q V+ + E Y T Sbjct: 111 VNDTANLVTALMDRRKYEDTFDQSDPLNLNYIPFDYYDYNIMTNQNVEHSPERYFTYKRD 170 Query: 458 TPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHI-RGVGGSGKST 516 +G+ L+ E++++ +G + K +F+ G GG GKS Sbjct: 171 YDLEDGDAECTNQWLLESLGGDEKLLELIKILIGASFYRSYKPLQFVIFITGEGGDGKSE 230 Query: 517 LMNLI-KYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA 575 ++ G++ + I++ N +L L + + N + ++ Sbjct: 231 FLDYWGSKLIGSRTNSHLSFDQIVK------TGTNFALAELYHKELNTYDDLNASYIDSS 284 Query: 576 --AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFD 633 KQ+TGG+ A + T N ++N A RR + + Sbjct: 285 MMGTAKQLTGGNPFDAEVKNKR-NLRFANYATMVFATNDMPEIQNLGFAEKRRIYIFKW- 342 Query: 634 KPIANRDASFAQKLETKYTLEAKKWFLKG---VKAYISKG----LDVDIPEVCLKAKEEE 686 I N + + TK K + K G + E + ++ Sbjct: 343 HKIPNFEEKYGMLRITKERGAFAKQCIDAFSIAKLRRDTGESQQDVLPKCEAIEENWKQF 402 Query: 687 RQGTDTYQAWIDDCCDIGENLW------EESHSLAKSYSEYREQELNYDRKRISTRTVTL 740 + +D ++ C+ E H L ++ ++ + N K ++ R Sbjct: 403 QLDSDPVARFVASRCEADPEYTGDHGWIVEKHDLYTNFIDWA-DKHNLKVKGMTERKFNK 461 Query: 741 NLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDNSNII 785 +K+ GF ++ + +K+ R+ + + L P D +S I Sbjct: 462 KIKKLGFQEVVR----KVSYKATRVWQNMMLLPDGVENDTDSKIG 502 >gi|227544975|ref|ZP_03975024.1| DNA primase [Lactobacillus reuteri CF48-3A] gi|300909992|ref|ZP_07127452.1| DNA primase [Lactobacillus reuteri SD2112] gi|227185036|gb|EEI65107.1| DNA primase [Lactobacillus reuteri CF48-3A] gi|300892640|gb|EFK86000.1| DNA primase [Lactobacillus reuteri SD2112] Length = 522 Score = 153 bits (387), Expect = 7e-35, Method: Composition-based stats. Identities = 47/347 (13%), Positives = 109/347 (31%), Gaps = 24/347 (6%) Query: 422 LDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPS------QEFLDLVSG 475 ++ S + +GI D E + + + T T +V+ + F + Sbjct: 153 INKSINLVPVGNGIFDKENKKLLPFNPKYVFTSKVATKYVDNDIPEPTYNGWTFSKWIEE 212 Query: 476 YF-ESEEVMDYFTRCVGMALLGGNKAQR--FIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532 E+ + + + + + G G +GKST L+ G Sbjct: 213 LSNGGEDKATLLWQMIASVIQNRRTSNVLFCLIDNGEGRTGKSTFEALLMNLVGKNNYTA 272 Query: 533 AEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN-ENDEINAAKIKQMTGGDCMTARL 591 + + + L + G+ ++I + + + N + +K + + + Sbjct: 273 LKLEEFD---------HSFLLAQAYGASLIIGDDNDPKGYIDNGSTLKSIVTNELVLINP 323 Query: 592 NYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKY 651 +S T N ++ + +RR+ +I F+ + K E Sbjct: 324 KGQRPFSA-KFYCTIVQSMNGFPRFKDTSNGLYRRFRLIQFNHQYPDTPDGRKVKDEYVK 382 Query: 652 TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEES 711 +W LK KA + +A + + D +++++ E+ Sbjct: 383 DQRLLQWILK--KALQVNIDTIINTRESQEAVNDLQLENDIVLSFVNEVVPNLESTRIPI 440 Query: 712 HSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEK 758 L + +Y + + ++ T T +K G +K Sbjct: 441 ALLFALFRKYVDDN--NSKNGMTRATFTRRIKPLMERNGWNYKKSRP 485 >gi|307149770|ref|YP_003890813.1| Primase 2 [Cyanothece sp. PCC 7822] gi|306986570|gb|ADN18448.1| Primase 2 [Cyanothece sp. PCC 7822] Length = 302 Score = 153 bits (387), Expect = 9e-35, Method: Composition-based stats. Identities = 44/288 (15%), Positives = 92/288 (31%), Gaps = 41/288 (14%) Query: 18 FKLIPLRLGDKRPQRLGKWEEQLLSSEKI-----------------DKLP--ACGFGFVC 58 + LIP+ + +W+ + +++ + P G G + Sbjct: 23 WPLIPVNRN--KQPIGHQWQNHPFTRDQLITNLTGRGYLVVLNKYYQRYPIRPPGIGILL 80 Query: 59 GVGEQP-LYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNK----EGI 113 G + L A D+D + + ++ L T G+ + F++ + Sbjct: 81 GHNSKEFLVALDVDGYSAQ--SFIQELLPRLPPTIAFTSGRPGRCQYLFKLPPGHSIKPF 138 Query: 114 KKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYL 173 K+ L+I GQ V +Y W ++ + ++ E+ ++ Sbjct: 139 KRITGPGEA---LEIRATGQQSVLPPSPHPVTGQYFWLGGCRPDEM-EVAIIPEQIIDL- 193 Query: 174 FKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVV 233 + K + I + + + T E + +D WI + Sbjct: 194 -----AQSPKRTKKIQPITKAPLIREVRHDRATTIEAAKSALSLIHANFADDYDSWIRIG 248 Query: 234 MAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTA 281 M++H S + RWS+ + Y YKW +F + D Sbjct: 249 MSLHFI---SFSLLDDWDRWSQLSAKYQPGECYYKWASFKGSGVSDRT 293 >gi|327198106|ref|YP_004306636.1| DNA primase [Enterococcus phage EFRM31] gi|297179201|gb|ADI23902.1| DNA primase [Enterococcus phage EFRM31] Length = 528 Score = 153 bits (386), Expect = 1e-34, Method: Composition-based stats. Identities = 71/475 (14%), Positives = 146/475 (30%), Gaps = 62/475 (13%) Query: 324 FLYTADTKAWYKKDKNNVY--IWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSK 381 +Y DTK Y+ ++N+ +W ++ + + Sbjct: 96 VVYNHDTKI-YEVSEDNLEARLWQKLYNEFMMVYTPHYAENAKVANQFRNAVQ------- 147 Query: 382 SPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETG 441 R N N+ N K + ++G + Sbjct: 148 --RMAKNALASGANLPFNDKM----------------------DPNKIAFKNGTYRFKED 183 Query: 442 QKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQ 501 KE Y T +++ + + EE + +G Q Sbjct: 184 TLKPTVKEDYQTTRIEYDYIDNPKHNIVAEWIEYIL--EEDAKTLFQLIGRIFYRNQDPQ 241 Query: 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRI 561 + G G +GKS +M+ I+ G +A + + N + +L G + Sbjct: 242 AMVFATGEGSNGKSHVMSFIEDLVGKSNTSHATLASLSGN------NDKFASSQLFGKMV 295 Query: 562 VIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDD 621 I ++ +K ++G D M+A N + N + Sbjct: 296 NIETDMPAQHIKQTGTLKTLSGNDVMSAEYKGINKF-TFTNYALMIFTTNNMPTFSDTSH 354 Query: 622 AWWRRYIVIPFDKPIANRDASFAQKLET------KYTLEAKKWFLKGVKAYI-----SKG 670 + RR I +PF+K + + + + LE + E + L+ + + Sbjct: 355 GFLRRIITLPFNKTMGRDNPTDSMWLERSKNFTYEEKSEFISYCLQQYRNVLFGLNGETK 414 Query: 671 LDVDIPEVCLKAKEEERQGTDTYQAWID-DCCDIGENLW--EESHSLAKSYSEYREQELN 727 + K ++ QG DT +I+ + + N+ + L ++Y+ +E Sbjct: 415 GQFWTSDNANKLRDAFIQGNDTMANFIELNELEFTNNIDDVIPNTELLEAYNTMLREENL 474 Query: 728 YDRKRISTRTVTLNLKQKGFIGGIKREKIEKE--WKSKRIIKGLKLKPAFESVDD 780 + +S + LK+K I I K + +R ++ K D+ Sbjct: 475 ME---VSAKKFIPELKRKAQSENIILSVITKRVDGRVQRCTTNVRWKTNTSETDN 526 >gi|168052394|ref|XP_001778635.1| predicted protein [Physcomitrella patens subsp. patens] gi|162669953|gb|EDQ56530.1| predicted protein [Physcomitrella patens subsp. patens] Length = 456 Score = 153 bits (386), Expect = 1e-34, Method: Composition-based stats. Identities = 72/378 (19%), Positives = 137/378 (36%), Gaps = 62/378 (16%) Query: 334 YKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR 393 Y D N + S + ++ + + E + +K F ++D RR Sbjct: 124 YFFDTRNWALKSSKASMMKEILVGMYRFIADVCESYIETIKPA---TKIIDFIQSSDNRR 180 Query: 394 QNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYIT 453 + + + +LL+S +G + G+ D + + + YIT Sbjct: 181 KIMYTCAGM----------LYKEDFEELLNSRRDMIGMKGGVYDFTEDRFRRMEPDDYIT 230 Query: 454 KSTGTPFVEGEPS----QEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGV 509 ST PFV + + E LDL+S F Sbjct: 231 LSTRIPFVPLDYNSEATNEVLDLLSKIFS--------------------------IWSVF 264 Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569 G +GK+ +++L++ AFG+ + + + + ++ A P L L I ++ E +E Sbjct: 265 GDNGKTVMVSLVERAFGDYAIKMLTSLLMGKR--VQSSAATPKLAMLKRRLIALVQEPDE 322 Query: 570 NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIV 629 D++N +K++TG D + R Y P + ++ N+ + D A W R V Sbjct: 323 GDKLNLGVMKELTGNDSLYIRELYEEGAV-IPQTAKFVLIANRIPQMSTFDKAVWSRVRV 381 Query: 630 IPFDKPIAN-------------RDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIP 676 +PF + +D +F+ K+ + ++ K Y++ GL + P Sbjct: 382 MPFISTFVDKIEPSHDPLTTHLKDINFSNKIPL-LAHVFMRLVIEEYKQYLTYGL--EEP 438 Query: 677 EVCLKAKEEERQGTDTYQ 694 E R D + Sbjct: 439 NEGKDCTETIRVSNDIFG 456 >gi|67925585|ref|ZP_00518913.1| hypothetical protein CwatDRAFT_0747 [Crocosphaera watsonii WH 8501] gi|67852574|gb|EAM48005.1| hypothetical protein CwatDRAFT_0747 [Crocosphaera watsonii WH 8501] Length = 288 Score = 153 bits (386), Expect = 1e-34, Method: Composition-based stats. Identities = 51/277 (18%), Positives = 84/277 (30%), Gaps = 32/277 (11%) Query: 26 GDKRPQRLGKWEEQLLSSEK-IDKLPAC----------------GFGFVCGVGEQP-LYA 67 K+ W+ + + I G G +CG + L+A Sbjct: 19 NGKKQPLGKNWQRNPYTPSQAIAIFQQGYVTLGGEKGSYRVKPLGIGILCGHNSKEFLFA 78 Query: 68 FDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHL- 126 D D + L T G+ + +++ K + G + Sbjct: 79 IDCDGISA---HRSLQRLGQLPPTVSFTSGRPGRCQYLYKLPSHKQIKSCKVTTAPGEVL 135 Query: 127 DILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVK 186 +I G V +Y W P +V P ++L ++ T K Sbjct: 136 EIRGSHHQSVLPPSPHPITGQYRWVNSPADVEVAIAP-------QWLVQWIDLQTYKPSK 188 Query: 187 DKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKG 246 K + P + + T+ E L +Y +D WI V MA+ S Sbjct: 189 PKNNRKPFHQNVSKLDTPSTSEEAAVALLDLIPSYYADDYDSWIKVGMALKSI---SPVL 245 Query: 247 KEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKK 283 E RWS+Q + YKW TF+ I + Sbjct: 246 LEAWDRWSRQSKKWKPGECAYKWRTFNGVGISERTLY 282 >gi|168187843|ref|ZP_02622478.1| CHC2 zinc finger domain protein [Clostridium botulinum C str. Eklund] gi|169294309|gb|EDS76442.1| CHC2 zinc finger domain protein [Clostridium botulinum C str. Eklund] Length = 731 Score = 153 bits (385), Expect = 2e-34, Method: Composition-based stats. Identities = 73/504 (14%), Positives = 170/504 (33%), Gaps = 31/504 (6%) Query: 296 KLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTA--DTKAWYKKDKNNVYIWSLTLDKITA 353 K+ P A Y + K Y + I S+ L K+ Sbjct: 243 KVFPTKDYAKEIGQDITDLFNLKYLDKEQFNNILDEIKPTYTYLTDKGKINSIKLAKLIL 302 Query: 354 SIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGS 413 + + + + KE F + K+ + T + + Sbjct: 303 NCEDIIYTNKEGFFHYEDGY-YKLKDDDKNTLMKQVISNYLGDSILNN-NRTKNEVLSQL 360 Query: 414 IFSITSDLLDSSSRFLGEQDGILDLETG--QKVKPTKELYITKSTGTPFV--EGEPSQEF 469 + + ++ ++++L ++ +L + + + T ++ F + + S + Sbjct: 361 MELTVIEEIEPNNQYLNFKNCLLKVTKEGIEVMDHTPDIITIHRFDYDFKRADYKNSNYY 420 Query: 470 LDLVSGYFESEEVMDYFTRCVGMALLGGNK-AQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 L +++ +++++ + G L+ + + + I G G+GKST + ++ Sbjct: 421 KGLKYALYDNTDIVEFLQQFAGACLMPNARLMKAALIISGTKGTGKSTFIEPLQEMMKG- 479 Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAA-KIKQMTGGDCM 587 + + L+ + I+S + + ++K++ G+ + Sbjct: 480 --------LFETYDLKTLEEDKYIISYLINKK-CILSTDDGGKPLETCHRLKKLIYGENV 530 Query: 588 TARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI---ANRDASFA 644 + + + I N +P +A + R + F + I D F Sbjct: 531 PTDRKFK-SNVSLNLNLAIVIGLNDIPKFNDPSNAIFDRLQFVEFKRKIRGTEKEDPHFI 589 Query: 645 QKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDI- 703 +K++ LE + L G+ + +++P+ KE G ++W+ C ++ Sbjct: 590 EKIKKYEMLEVINFSLDGLAKLLRNDYKLNVPKEVQAFKENIIIGNSPLESWLYSCTEVC 649 Query: 704 GENLWEESHSLAKSYSEYREQELNYDRKRISTR----TVTLNLKQKGFIGGIKREKIEKE 759 + + L SY Y EL+ D K L+ KGF + + + Sbjct: 650 SNDDFTTLKDLYNSYLGYCLNELSLDYKEAKNECGKQEFNKILQGKGFEFKKEIRRAGIK 709 Query: 760 WKSKRIIKGLKLKPAFESVDDNSN 783 +KS + G+KL + N Sbjct: 710 YKS--VFFGIKLNETGRTYLINYE 731 >gi|227894341|ref|ZP_04012146.1| DNA primase [Lactobacillus ultunensis DSM 16047] gi|227863851|gb|EEJ71272.1| DNA primase [Lactobacillus ultunensis DSM 16047] Length = 508 Score = 153 bits (385), Expect = 2e-34, Method: Composition-based stats. Identities = 77/521 (14%), Positives = 161/521 (30%), Gaps = 51/521 (9%) Query: 282 KKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNV 341 KK S F + +I + + N +I D K+ Sbjct: 16 KKDSNFKARPSWAQPIIDQYGNTRGWRAKPNLLAKTILDDNEMFSVVDDNG-----KSTS 70 Query: 342 YIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSK 401 YI++ + L ++ V + + + N Sbjct: 71 YIYNGDYWEPVD-----LAGIRNIVASYF-----------YDDEYRHAYNLLSSKVVNDT 114 Query: 402 AKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFV 461 A ++ + ++ ++ T Q V+ + E Y T Sbjct: 115 ANLVTALMDRRKYEDTFDQSDPLNLNYIPFDYYDYNIMTNQNVEHSPERYFTYKRDYDLE 174 Query: 462 EGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHI-RGVGGSGKSTLMNL 520 +G+ L+ E++++ +G + K +F+ G GG GKS ++ Sbjct: 175 DGDAECTNQWLLESLGGDEKLLELIKILIGASFYRCYKPLQFVIFITGEGGDGKSEFLDY 234 Query: 521 I-KYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA--AK 577 G++ + I++ N +L L + + N + ++ Sbjct: 235 WGSKLIGSRTNSHLSFDQIVK------TGTNFALAELYHKELNTYDDLNASYIDSSMMGT 288 Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637 KQ+TGG+ A + T N ++N A RR + + I Sbjct: 289 AKQLTGGNPFDAEVKNKR-NLRFANYATMVFATNDMPEIQNLGFAEKRRIYIFKW-HKIP 346 Query: 638 NRDASFAQKLETKYTLEAKKWFLKG---VKAYISKG----LDVDIPEVCLKAKEEERQGT 690 N + + TK K + K G + E + ++ + + Sbjct: 347 NFEEKYGMLRITKERGAFAKQCIDAFSIAKLRRDTGESQQDVLPKCEAIEENWKQFQLDS 406 Query: 691 DTYQAWIDDCCDIGENLW------EESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQ 744 D ++ C+ E H L ++ ++ + N K ++ R +K+ Sbjct: 407 DPVARFVASRCEADPEYTGDHGWIVEKHDLYTNFIDWA-DKHNLKVKGMTERKFNKKIKK 465 Query: 745 KGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDNSNII 785 GF ++ + +K+ R+ + + L P D +S I Sbjct: 466 LGFQEVVR----KVSYKATRVWQNMMLLPDGVENDTDSKIG 502 >gi|167855067|ref|ZP_02477840.1| phage DNA primase-like protein [Haemophilus parasuis 29755] gi|167853805|gb|EDS25046.1| phage DNA primase-like protein [Haemophilus parasuis 29755] Length = 609 Score = 153 bits (385), Expect = 2e-34, Method: Composition-based stats. Identities = 62/379 (16%), Positives = 126/379 (33%), Gaps = 46/379 (12%) Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPF-VEGEPSQEFLDLVSGYF-ESEE 481 + +LG Q+G+L+ +TG+ + ++E ++ + + F D +S +++ Sbjct: 249 ENPDYLGFQNGVLNKKTGEFLPHSEENFLRTIDPFECRTDCTDTPYFDDWLSFVSNGNQQ 308 Query: 482 VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQN 541 D + M L ++ F+ G GG+GKS L + G + Sbjct: 309 KHDAILAGLYMILTNRHEWHLFLEATGEGGAGKSILGEIATVLNGKSNTAILDLKAFESE 368 Query: 542 RPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESP 601 + L+G + S + + A +K MTGGD + +L Y + E Sbjct: 369 KGR---------AVLVGKTLAY-SPDQKPYKGTADDLKAMTGGDPIKVKLLYKDE-LEIK 417 Query: 602 ASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDAS-FAQKLETKYTLEAKKWFL 660 + + N + + + RR ++I FD+ I + + L Sbjct: 418 VNAIFMMSTNYPITFTDRNGGITRRRVIILFDRKIPKEKKDVYFMEKVRAEVYGIVNKLL 477 Query: 661 KGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAW-----IDDCCD---- 702 PE E+ ++ + + ID Sbjct: 478 A----------RFPNPEEARLILEDYQAQGEAVAVKREANHLVDFASAFKIDSNLKPLMM 527 Query: 703 IGENLWEESHS--LAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEW 760 G N ++S L K+Y Y E ++ ++ ++ G + IE Sbjct: 528 WGSNRTQKSEDVALFKAYLFYCECLRL--QQPLNLQSFKQAFPDALRDSGQTEKLIEIGV 585 Query: 761 KSKRIIKGLKLKPAFESVD 779 K+ + + K ++ Sbjct: 586 KNGYTLLNIHWKDRLTTIQ 604 >gi|579075|emb|CAA53906.1| unnamed protein product [Streptomyces phage phiC31] Length = 202 Score = 152 bits (383), Expect = 2e-34, Method: Composition-based stats. Identities = 41/201 (20%), Positives = 76/201 (37%), Gaps = 15/201 (7%) Query: 577 KIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI 636 +K++TG D +TAR + +F + N ++ D+ WRR +IPF + Sbjct: 1 MLKRVTGKDKVTARFL-RQEFFTFAPTFLIMLATNHKPKFKSQDEGLWRRVKLIPFVRYF 59 Query: 637 --ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQ 694 RD +KL + W ++G + + GL PE A E R +D Sbjct: 60 APEERDYDLDRKL-RAESAGIVAWAVRGAVEWYANGLG--DPESISTATREYRATSDALA 116 Query: 695 AWIDDCCD-IGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKR 753 + D ++ SY ++ E E + S + ++++G Sbjct: 117 GFFPGVLDAADDSAIVSGADAYNSYRDWCEAEGLKSTEVWSRKAFYGAMEERGIG----- 171 Query: 754 EKIEKEWKSKRIIKGLKLKPA 774 +K+ + + G+K A Sbjct: 172 ---KKKTNTGIALVGVKFADA 189 >gi|323183679|gb|EFZ69075.1| phage/plasmid primase, P4 family, C-terminal domain protein [Escherichia coli 1357] Length = 777 Score = 151 bits (382), Expect = 3e-34, Method: Composition-based stats. Identities = 66/419 (15%), Positives = 121/419 (28%), Gaps = 65/419 (15%) Query: 378 KNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILD 437 ++ P W R + + K S +L+ R +G ++G+LD Sbjct: 368 RHRTLPGMWPGWFQRLRAPFSSGKVASVVDTLKLIIPQQEAPS-----RRLIGFRNGVLD 422 Query: 438 LETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE-SEEVMDYFTRC 489 + G + ++ F + F + E D Sbjct: 423 TQNGTFHPHSPSHWMRTLCDVDFTPPVEGETLETHAPAFWRWLDRAAGGRAEKRDVILAA 482 Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549 + M L Q F+ + G GGSGKS + + G +A + R Sbjct: 483 LFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIETLESPR------- 535 Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609 L G ++ + + + A +K +TGGD ++ Y + YS V Sbjct: 536 --ERAALTGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYRDAYSTHIP-AVILAV 591 Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYI 667 N + + RR ++I F + IA RD K+ + ++ Sbjct: 592 NNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITR-ELAVIVRHLMQ------ 644 Query: 668 SKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGENL----------- 707 P + + + ++ D +I + Sbjct: 645 ----KFSDPMLARSLLQSQQNSDEALNIKRDADPTFDFIG-YLETLPQTSGMYMGNASII 699 Query: 708 -WEESHSLAKSYSEYREQELNYDRKRISTRTVTL----NLKQKGFIGGIKREKIEKEWK 761 L +Y Y E R +S + L LK+ G + K + Sbjct: 700 PRNYRKYLYHAYLAYMEANGY--RNVLSLKMFGLGLPVMLKEYGLNYEKRHTKQGIQTN 756 >gi|186684989|ref|YP_001868185.1| helicase superfamily protein [Nostoc punctiforme PCC 73102] gi|186467441|gb|ACC83242.1| Helicase superfamily 3 [Nostoc punctiforme PCC 73102] Length = 715 Score = 151 bits (382), Expect = 3e-34, Method: Composition-based stats. Identities = 81/493 (16%), Positives = 160/493 (32%), Gaps = 40/493 (8%) Query: 298 IPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMN 357 + D + + W K + KI + Sbjct: 228 MWDESRGKGMDDFIVANGKQEFDIEIAKAQ-RVEQWSNHFKEEEQHGNGN--KIKLPEHS 284 Query: 358 FLVSM-KEDVFDLSEEPEDNNKNSKSPRFWFN------TDYRRQNVEENSKAKSTAQSLE 410 + + + +L + + N +W + + +++ +K + Sbjct: 285 LMAEIIAPQLNNLKFDCQVNQWIQYQNGYWTTVSKEVISQKIIRKIKDTYPSKGFSSGYP 344 Query: 411 AGSIFSITSDLLDSS-----SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP 465 G I + S+LL + + L ++G+LDL+T + + + Y Sbjct: 345 EGVIKFLLSELLCNDFVEPSNHLLPFKNGVLDLKTNKLILHSPNHYFRNIIDREHDHKAT 404 Query: 466 SQ-EFLDLVSGYFESEEVMDYFTR-CVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKY 523 E + FE+ + L G K RF I G+GG+GKST M L Sbjct: 405 DWGEIEKWMDFVFENNPSQKHLLICWYAAVLRGMWKLHRFALIIGLGGTGKSTAMKLAIA 464 Query: 524 AFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTG 583 G ++ + + + N+ + R+V I++ + N +K +TG Sbjct: 465 LIGKRFSHSLTITALNNNQ--------FQTANIYDKRLVCINDADRYRG-NLEILKNITG 515 Query: 584 GDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASF 643 GD + Y +S N D RR I+ FD+ + N D F Sbjct: 516 GDEINIEQKYERAFSAVYKGMVMITANNFV--FSAHDSGLDRRMILFKFDRQLPNIDTIF 573 Query: 644 AQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQ--GTDTYQAWIDDCC 701 +KL T + L + I L + E + + + T++ W+++ Sbjct: 574 LEKL-TAQISGFTNYLLSIPEPEIVHTLLYKVDESGTRKQNDVEALLQTNSLADWLNNSY 632 Query: 702 DIGENLWEESH----SLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIE 757 + ++ + Y +Y K S + + + + G K + Sbjct: 633 VYDPDNQVPIGVDKYNINQLYGDYCIYCHKTRSKPCSNKEFSPEIIRLGRGKLEKVK--- 689 Query: 758 KEWKSKRIIKGLK 770 +S +I+GL+ Sbjct: 690 --IRSGFMIRGLR 700 >gi|300724280|ref|YP_003713598.1| putative phage primase [Xenorhabdus nematophila ATCC 19061] gi|297630815|emb|CBJ91484.1| putative phage primase [Xenorhabdus nematophila ATCC 19061] Length = 810 Score = 151 bits (382), Expect = 4e-34, Method: Composition-based stats. Identities = 86/693 (12%), Positives = 192/693 (27%), Gaps = 73/693 (10%) Query: 127 DILGCGQYFVAYNIHPKT-----KKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEIT 181 I G QY V +H T +++ + L Q+ Sbjct: 140 SIRGESQYLVKKGLHCPNQRLLQDGSLLLVTQTLSDTNTGAQIITPNGEKRLVSGTQKKG 199 Query: 182 VPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETR 241 + + + P +T G + V V + Sbjct: 200 SFIPVSEITGTPDTIIITEGYATA----LTVSQLHNGVVLAAIDESNLLNVAELVRKQWS 255 Query: 242 GSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFT-SLFYHHGKLIPK 300 S W QG F E++ T + + Sbjct: 256 ESKIILAADNDWHAQGERDKNGKFKKNVGKIAAEKVAKAINGWVTLPPTGHKADWDDYRQ 315 Query: 301 GLLASRFSDAYNKAMFSIYKKG--HFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNF 358 ++ ++ + +K + KK NN+ + + + A ++ Sbjct: 316 HHGIEAAKQVFSNGLYQVGEKKLMEAEAAVIHETKPKKANNNLAQMAAS--QRGALLVEH 373 Query: 359 LVSMK-----EDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGS 413 + E V+ + + +++ R + + + +++ Sbjct: 374 YQKIAVHAESEAVYHYNGTTWETVSDNELRRTMVAIFDQHDTPYSPNGINNAIYAMKLQI 433 Query: 414 IFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGE-------PS 466 + S +G +G+ +L T + E ++ G F + + Sbjct: 434 PVIG-----EQRSDLIGFCNGVYELSTQKFTPHQPEHWLMNHNGIEFTQPAIGENLSDHA 488 Query: 467 QEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF 525 +F +S +E M+ + M L Q FI + G GGSGKS + Sbjct: 489 PDFYRWLSHAAGQNENKMNRIKAALFMILANRYDWQLFIEVTGEGGSGKSVFTYIATLLA 548 Query: 526 GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK-IKQMTGG 584 G + + + R + +G + I+ ++ + IK +TGG Sbjct: 549 GEHNTASGNMRALDEARGR---------YQFVGKSL--ITLPDQVKYVGEGAGIKAITGG 597 Query: 585 DCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDAS 642 D + Y +S N+ + + RR ++ PF+ P+ +D Sbjct: 598 DLIEVDGKYEKQFSTII-KAVVLATNNEPMSFTERNGGIARRRVIFPFNIPVKESEKDPQ 656 Query: 643 FAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEE--RQGTDTYQAW---- 696 +K+ + L + + + + + E + +D + Sbjct: 657 LPEKISR-ELPVIIRHLL---TEFADQNKAKKLLQAQRDSNEALTVKSHSDPLYRFCGYL 712 Query: 697 --IDDCC-----DIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIG 749 ++D + + L +Y + E + ++ ++ + Sbjct: 713 VSVNDVTGMKMGNKNISPRAPRMYLYHAYLSFMEAHGF--ERPLTLTKFGESIPKIMLE- 769 Query: 750 GIKREKIEKEWKSKRIIKGLKLKPAFESVDDNS 782 KE++ R KG + Sbjct: 770 ------YRKEYRKVRTKKGYSYNVELSEEAEEW 796 >gi|188491844|ref|ZP_02999114.1| phage/plasmid primase C-terminal domain, P4 family [Escherichia coli 53638] gi|188487043|gb|EDU62146.1| phage/plasmid primase C-terminal domain, P4 family [Escherichia coli 53638] Length = 777 Score = 151 bits (381), Expect = 4e-34, Method: Composition-based stats. Identities = 61/371 (16%), Positives = 110/371 (29%), Gaps = 60/371 (16%) Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478 R +G ++G+LD + G + ++ F + EF + Sbjct: 411 RRLIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVEGETLETHAPEFWRWLDRAAG 470 Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537 E D + M L Q F+ + G GGSGKS + + G +A Sbjct: 471 GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIET 530 Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597 + R L G ++ + + + A +K +TGGD ++ Y + Y Sbjct: 531 LESPR---------ERAALTGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYRDAY 580 Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655 S V N + + RR ++I F + IA RD K+ Sbjct: 581 STHIP-AVILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITR-ELAVI 638 Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGEN 706 + ++ P + + + ++ D +I + Sbjct: 639 VRHLMQ----------KFSDPMLARSLLQSQQNSDEALNIKRDADPTFDFIG-YLETLPQ 687 Query: 707 L------------WEESHSLAKSYSEYREQELNYDRKRISTRTVTL----NLKQKGFIGG 750 L +Y Y E R +S + L LK+ G Sbjct: 688 TSGMYMGNASIIPRNYRKYLYHAYLAYMEANGY--RNVLSLKMFGLGLPVMLKEYGLNYE 745 Query: 751 IKREKIEKEWK 761 + K + Sbjct: 746 KRHTKQGIQTN 756 >gi|329115876|ref|ZP_08244593.1| nucleoside triphosphatase, D5 family [Streptococcus parauberis NCFD 2020] gi|326906281|gb|EGE53195.1| nucleoside triphosphatase, D5 family [Streptococcus parauberis NCFD 2020] Length = 426 Score = 151 bits (381), Expect = 4e-34, Method: Composition-based stats. Identities = 64/402 (15%), Positives = 136/402 (33%), Gaps = 36/402 (8%) Query: 385 FWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLL----------DSSSRFLGEQDG 434 +F + +++N K ++AG + ++ ++L + + + + Sbjct: 1 MYFYNPDKGYYMQDNELIKDIMNIIKAGIVENVAKNVLYIIGRKSPIKELNPEYTALGNC 60 Query: 435 ILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFL-----DLVSGYFE-SEEVMDYFTR 488 + +T Q + ++ +T+ T + + + F+ E+ D + Sbjct: 61 VYSYKTKQFYDFSPDIPVTRKIETNYNPEATEPDIKGWSPTKWLKELFDNDNEMYDLVIQ 120 Query: 489 CVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGK 548 + + + G GG+GK TL I G V + + +++ ++R + Sbjct: 121 MFKACITNEPLERI-FWLYGAGGTGKGTLQQFIINLVGLDNVASLKITELARSRFTTSI- 178 Query: 549 ANPSLIRLMGSRIVIISETNENDEI-NAAKIKQMTGGDCMTARLNYGNTYSESPASFTPF 607 L+G IVI + +N I + +++ +T GD MT YS T Sbjct: 179 -------LLGKSIVIGDDIQQNAMIKDTSELFSLTTGDIMTIEEKGLKPYS-LRLQMTVI 230 Query: 608 IVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYI 667 N + DA RR ++IPF N+ +K ++ LK I Sbjct: 231 QSSNGLPIMDGDKDAISRRLMIIPFTSKYKNKPNKAIKKYYINNK-NVLEYILKLA---I 286 Query: 668 SKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD-CCDIGENLWEESHSLAKSYSEYREQEL 726 P + + + A+I+D D + + + + + Y E Sbjct: 287 ETPTKEIYPSSSKELVHDYLLEINPVLAFIEDFFTDSLNSEFIPNSFVWHVWKNYLEYNN 346 Query: 727 NYDRKRIST--RTVTLNLKQKGFIGGIKREKIEKEWKSKRII 766 + + R + NL +I +R + Sbjct: 347 LRSFRTETALHREIKTNLPD--YIKAGQRTIPKGREHHTNFY 386 >gi|260857931|ref|YP_003231822.1| putative DNA primase [Escherichia coli O26:H11 str. 11368] gi|257756580|dbj|BAI28082.1| putative DNA primase [Escherichia coli O26:H11 str. 11368] gi|323155327|gb|EFZ41510.1| phage/plasmid primase, P4 family, C-terminal domain protein [Escherichia coli EPECa14] Length = 777 Score = 151 bits (380), Expect = 5e-34, Method: Composition-based stats. Identities = 59/371 (15%), Positives = 108/371 (29%), Gaps = 60/371 (16%) Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478 +G ++G+LD + G + ++ F + F + Sbjct: 411 RHLIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVDGETLETHAPAFWRWLDRAAG 470 Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537 E D + M L Q F+ + G GGSGKS + + G +A Sbjct: 471 GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIET 530 Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597 + R L G ++ + + + A +K +TGGD ++ Y + Y Sbjct: 531 LESPR---------ERAALTGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYRDAY 580 Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655 S V N + + RR ++I F + IA RD K+ Sbjct: 581 STHIP-AVILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITR-ELAVI 638 Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGEN 706 + ++ P + + + ++ D +I + Sbjct: 639 VRHLMQ----------KFSDPMLARSLLQSQQNSDEALNIKRDADPTFDFIG-YLETLPQ 687 Query: 707 L------------WEESHSLAKSYSEYREQELNYDRKRISTRTVTL----NLKQKGFIGG 750 L +Y Y E R +S + L LK+ G Sbjct: 688 TSGMYMGNASIIPRNYRKYLYHAYLAYMEANGY--RNVLSLKMFGLGLPVMLKEYGLNYE 745 Query: 751 IKREKIEKEWK 761 + K + Sbjct: 746 KRHTKQGIQTN 756 >gi|290475667|ref|YP_003468556.1| putative phage primase [Xenorhabdus bovienii SS-2004] gi|289174989|emb|CBJ81792.1| putative phage primase [Xenorhabdus bovienii SS-2004] Length = 814 Score = 150 bits (379), Expect = 7e-34, Method: Composition-based stats. Identities = 86/693 (12%), Positives = 192/693 (27%), Gaps = 73/693 (10%) Query: 127 DILGCGQYFVAYNIHPKT-----KKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEIT 181 I G QY V +H T +++ + L Q+ Sbjct: 144 SIRGESQYLVKKGLHCPNQRLLQDGSLLLVTQTLSDTNTGAQIITPNGEKRLVSGTQKKG 203 Query: 182 VPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETR 241 + + + P +T G + V V + Sbjct: 204 SFIPVSEITGTPDTIIITEGYATA----LTVSQLHNGVVLAAIDESNLLNVAELVRKQWS 259 Query: 242 GSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFT-SLFYHHGKLIPK 300 S W QG F E++ T + + Sbjct: 260 ESKIILAADNDWHAQGERDKNGKFKKNVGKIAAEKVAKAINGWVTLPPTGHKADWDDYRQ 319 Query: 301 GLLASRFSDAYNKAMFSIYKKG--HFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNF 358 ++ ++ + +K + KK NN+ + + + A ++ Sbjct: 320 HHGIEAAKQVFSNGLYQVGEKKLMEAEAAVIHETKPKKANNNLAQMAAS--QRGALLVEH 377 Query: 359 LVSMK-----EDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGS 413 + E V+ + + +++ R + + + +++ Sbjct: 378 YQKIAVHAESEAVYHYNGPTWETVSDNELRRAMVAIFDQHDTPYSPNGINNAIYAMKLQI 437 Query: 414 IFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGE-------PS 466 + S +G +G+ +L T + E ++ G F + + Sbjct: 438 PVIG-----EQRSDLIGFCNGVYELSTQKFTPHQPEHWLMNHNGIEFTQPAIGENLSDHA 492 Query: 467 QEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF 525 +F +S +E M+ + M L Q FI + G GGSGKS + Sbjct: 493 PDFYRWLSHAAGQNENKMNRIKAALFMILANRYDWQLFIEVTGEGGSGKSVFTYIATLLA 552 Query: 526 GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK-IKQMTGG 584 G + + + R + +G + I+ ++ + IK +TGG Sbjct: 553 GEHNTASGNMRALDEARGR---------YQFVGKSL--ITLPDQVKYVGEGAGIKAITGG 601 Query: 585 DCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDAS 642 D + Y +S N+ + + RR ++ PF+ P+ +D Sbjct: 602 DLIEVDGKYEKQFSTII-KAVVLATNNEPMSFTERNGGIARRRVIFPFNIPVKESEKDPQ 660 Query: 643 FAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEE--RQGTDTYQAW---- 696 +K+ + L + + + + + E + +D + Sbjct: 661 LPEKISR-ELPVIIRHLL---TEFADQNKAKKLLQAQRDSNEALTVKSHSDPLYRFCGYL 716 Query: 697 --IDDCC-----DIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIG 749 ++D + + L +Y + E + ++ ++ + Sbjct: 717 VSVNDVTGMKMGNKNISPRAPRLYLYHAYLSFMEAHGF--ERPLTLTKFGESIPKIMLE- 773 Query: 750 GIKREKIEKEWKSKRIIKGLKLKPAFESVDDNS 782 KE++ R KG + Sbjct: 774 ------YRKEYRKVRTKKGYSYNVELSEEAEEW 800 >gi|157325399|ref|YP_001468818.1| gp34 [Listeria phage P35] gi|66733404|gb|AAY53219.1| gp34 [Listeria phage P35] Length = 634 Score = 150 bits (379), Expect = 8e-34, Method: Composition-based stats. Identities = 68/518 (13%), Positives = 158/518 (30%), Gaps = 37/518 (7%) Query: 269 WDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTA 328 D F + + + F + K ++ + K + + Sbjct: 131 PDVFKTGKFENAVSMGEGGRNNFMFRHLAMAKSVVTADDVAKIAKFINEYLFDEPLPQSE 190 Query: 329 DTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFN 388 K+ + ++ +S ++K A + + + D EDN Sbjct: 191 LEKSVMQSLESETL-FSGLMEKRIAEQVVRDYRIVK-YRDSLYYFEDNQYKQDESGHILQ 248 Query: 389 TDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQ------ 442 Y+ + + + F + + + +G++D + Sbjct: 249 IAYKECGDVPTKVSDEVYRHISRMVEFVDSETVFP-----IRVANGVIDTRKAEAYGMDS 303 Query: 443 -KVKPTKELYITKSTGTPFVEGEP-SQEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNK 499 + + + P+ QE D ++ E+ +G LL + Sbjct: 304 SFIPIDDKKFSPYYINIPYNAEAEAVQEVDDYLNNLTGGDEDYKKVLLEALGSTLLTDPE 363 Query: 500 AQ----RFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIR 555 + + RG GG+GK TL+ +I G + V + + L Sbjct: 364 QKRLLAKIFIFRGNGGNGKGTLLTIISEILGRESVGTSSLEQLTNE---------SYLYS 414 Query: 556 LMGSRIVIISETNENDEIN--AAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKH 613 L G + + + N IK ++ D + R +S + T + N Sbjct: 415 LNGKLANLCDDVENSAIDNKKMKIIKNISTCDRIDLRKMREQAFSA-TLTCTLIMTSNHT 473 Query: 614 LFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA-KKWFLKGVKAYISKGLD 672 L +W RR + +P + +D F KL T L+ ++G+ + + Sbjct: 474 LKSFEKGKSWKRRVMWMPMFSEVVKKDPRFITKLTTPKALQYWLALMVEGLNRLLDQKCT 533 Query: 673 VDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKR 732 + +V + + + + E + + + Y + + E D+ Sbjct: 534 LTPSKVLEDYNKAYHADNNNALDFFATITE-NEIFDQPVKDVYEKYCAWFKDEHESDQDP 592 Query: 733 ISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLK 770 + T + ++ + ++++ + K+ LK Sbjct: 593 FKSTTFSRSVME---FYPVEKKNVRIGQKTPYCYVALK 627 >gi|307149891|ref|YP_003890934.1| Primase 2 [Cyanothece sp. PCC 7822] gi|306986691|gb|ADN18569.1| Primase 2 [Cyanothece sp. PCC 7822] Length = 302 Score = 150 bits (378), Expect = 9e-34, Method: Composition-based stats. Identities = 45/288 (15%), Positives = 91/288 (31%), Gaps = 41/288 (14%) Query: 18 FKLIPLRLGDKRPQRLGKWEEQLLSSEKIDK-----------------LP--ACGFGFVC 58 + LIP+ + +W+ ++ + + K P G G + Sbjct: 23 WPLIPVNRN--KQPIGHQWQNHPVTRDNLIKNFNQRGYIIVLNKYHQPYPIRPPGVGILL 80 Query: 59 GVGEQP-LYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNK----EGI 113 G + L A D+D + ++ L T G+ + F++ + Sbjct: 81 GQNSKEFLIALDVDGYSARAY--LQELIPHLPRTVAFTSGRPGRCQYLFKLPPGHSIKPF 138 Query: 114 KKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYL 173 K+ L+I GQ V +Y W ++ + ++ E+ ++ Sbjct: 139 KRITGPGEA---LEIRATGQQSVLPPSPHPVTGQYFWLGGCRPDEI-EVAIIPEQIIDL- 193 Query: 174 FKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVV 233 + K + I + + + T E + +D WI + Sbjct: 194 -----AQSPKRTKKIQPITKAPLIREVRHDRATTIEAAKSALSLIHPNFADDYDSWIRIG 248 Query: 234 MAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTA 281 M++H S + RWS+ + Y YKW +F + D Sbjct: 249 MSLHFI---SFSLLDDWDRWSQLSAKYQPGECYYKWASFKGSGVSDRT 293 >gi|326792799|ref|YP_004310620.1| Bifunctional DNA primase/polymerase [Clostridium lentocellum DSM 5427] gi|326543563|gb|ADZ85422.1| Bifunctional DNA primase/polymerase [Clostridium lentocellum DSM 5427] Length = 416 Score = 150 bits (378), Expect = 1e-33, Method: Composition-based stats. Identities = 64/433 (14%), Positives = 121/433 (27%), Gaps = 66/433 (15%) Query: 27 DKRPQRLGKWEEQLLSSEK-----IDKLPACGFGFVCGVGEQPLYAFDIDSK--DEKTAN 79 + W+E +++ K P G G L D+D+K +++ Sbjct: 42 KGKHPIFNGWQELATTNQDTITKWWSKYPDANIGIPTGERSGWLV-LDVDTKYQGDESLE 100 Query: 80 TFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYN 139 + +E L T G + + F+ K S + LD G VA Sbjct: 101 LLQMLYEDLPPTVTALTGSGGR-HLIFKYPKG--VHIPNKVSFKQGLDTRSNGGLIVATP 157 Query: 140 IHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTN 199 + Y+W F + E +E + + Q +V + + Sbjct: 158 SLHVSGNTYSWLEGHSPFD-SEPVEAPEWLLEVMCEGDQIQKREVVYQALETSTATVFEG 216 Query: 200 NNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGST 259 + N T S G G + I V + +E + R Sbjct: 217 SRNNHLT--------SLAGTLRRKGMSESGIIVALMAENEANCEPPLEVEEVR------- 261 Query: 260 YDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIY 319 ++ + +D+ N F Sbjct: 262 ----TIARSIGKYEPNKANLKP----------------------YYNRTDSGNAERFRDL 295 Query: 320 KKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKN 379 Y W+ IW+ + +S + V + EE + + Sbjct: 296 YGKDIRYCHILDKWF--------IWNGQYWEADSSG-RITELAIKTVRTMLEEAQQIQDD 346 Query: 380 SKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLE 439 + E S+ K+ +IT+D LD + Q+GI+DL+ Sbjct: 347 IARRELVKHALK----SEGFSRIKAMISLASDLQELTITTDELDKDIWKINCQNGIIDLK 402 Query: 440 TGQKVKPTKELYI 452 TG+ + ++ + Sbjct: 403 TGELLSHDRKYFY 415 >gi|240119370|dbj|BAH79233.1| putative P4-specific DNA primase [Escherichia coli O157:H7] Length = 777 Score = 150 bits (377), Expect = 1e-33, Method: Composition-based stats. Identities = 59/369 (15%), Positives = 108/369 (29%), Gaps = 60/369 (16%) Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE-S 479 +G ++G+LD + G + ++ F + F + Sbjct: 413 LIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVEGETLETHAPAFWRWLDRAAGGR 472 Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539 E D + M L Q F+ + G GGSGKS + + G +A + Sbjct: 473 AEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEHNATSATIETLE 532 Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599 R L G ++ + + + A +K +TGGD ++ Y + YS Sbjct: 533 SPR---------ERAALTGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYRDAYST 582 Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKK 657 V N + + RR ++I F + IA RD K+ + Sbjct: 583 HIP-AVILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITR-ELAVIVR 640 Query: 658 WFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGENL- 707 ++ P + + + ++ D +I + Sbjct: 641 HLMQ----------KFSDPMLARSLLQSQQNSDEALNIKRDADPTFDFIG-YLETLPQTS 689 Query: 708 -----------WEESHSLAKSYSEYREQELNYDRKRISTRTVTL----NLKQKGFIGGIK 752 L +Y Y E R +S + L LK+ G + Sbjct: 690 GMYMGNASIIPRNYRKYLYHAYLAYMEANGY--RNVLSLKMFGLGLPVMLKEYGLNYEKR 747 Query: 753 REKIEKEWK 761 K + Sbjct: 748 HTKQGIQTN 756 >gi|251777906|ref|ZP_04820826.1| conserved hypothetical protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|243082221|gb|EES48111.1| conserved hypothetical protein [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 643 Score = 150 bits (377), Expect = 1e-33, Method: Composition-based stats. Identities = 78/506 (15%), Positives = 166/506 (32%), Gaps = 33/506 (6%) Query: 287 FTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSL 346 + + K + NK F + G+ ++ DKN W+ Sbjct: 95 YAAFINKIKGNKDKLEDIPLIKYSDNKQAFISFINGNLRALINS-----VDKNKFAYWNS 149 Query: 347 TLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTA 406 ++ ++V + + E N + + + + + + Sbjct: 150 KAWELLTEEETYMV-YGNFITQCNLELRQNINVLEKQEYSEICKRMNKWDTDRNARECLN 208 Query: 407 QSLEAGSIFSITSDLLDSSSRFLGEQDG-ILDLETGQKVKPTKELYITKSTGTPFVEGEP 465 + + +D + + DG I++L TG+ + I ++ ++ Sbjct: 209 KVKRDKQHIINMKNYID-NRNLICSHDGKIINLATGEIKAANRNDLILFTSKYNLMDKGK 267 Query: 466 SQEFLDLVSGYFES---EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIK 522 + EF+ + ++ + + + LL Q I + G +GKST N++K Sbjct: 268 AVEFMQEKMKIYLDIIGKDRLLFILDLISYKLLDR-SLQSAIFMIGTRATGKSTFKNIMK 326 Query: 523 YAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMT 582 F N+ V+ ++ + + L L RI SE + I++A+ K + Sbjct: 327 DLFKNENVVIPYNYLTTSHKGNDDKSRDDILASLDNKRIAFCSEGEDEQTISSARFKTLL 386 Query: 583 GGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP--IANRD 640 +AR + N D A RR + + FDKP I R+ Sbjct: 387 SNSEESARKTGKELMEVNLKGLDIIFDTNSIPSFSTMDGAISRRLMFVKFDKPISIEKRN 446 Query: 641 ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDC 700 A + ++ +F+ +A G ++IP+ + D+ + + Sbjct: 447 ADYYKEEIAPNFDYVFSYFV--YRAIAMIGKKLEIPQCIKDDTSLKLSEVDSLLNFSREA 504 Query: 701 CDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEW 760 + + + L Y + E E QK I + ++ + Sbjct: 505 IAPFDGGFVKYSELENEYIRFCENEG-----------------QKSVIPEVLQDAKKYSK 547 Query: 761 KSKRIIKGLKLKPAFESVDDNSNIID 786 + II LK K + ++ + + D Sbjct: 548 RCNYIINLLKEKDGYYNIYKGNRVSD 573 >gi|324115992|gb|EGC09918.1| poxvirus D5 protein [Escherichia coli E1167] Length = 777 Score = 150 bits (377), Expect = 1e-33, Method: Composition-based stats. Identities = 60/371 (16%), Positives = 109/371 (29%), Gaps = 60/371 (16%) Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478 R +G ++G+LD + G + ++ F + F + Sbjct: 411 RRLIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVDGETLETHAPAFWRWLDRAAG 470 Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537 E D + M L Q F+ + G GGSGKS + + G +A Sbjct: 471 GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIET 530 Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597 + R L G ++ + + + A +K +TGGD ++ Y + Y Sbjct: 531 LESPR---------ERAALTGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYRDAY 580 Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655 S V N + + RR ++I F + IA RD K+ Sbjct: 581 STHIP-AVILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITR-ELAVI 638 Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGEN 706 + ++ P + + + ++ D +I + Sbjct: 639 VRHLMQ----------KFSDPMLARSLLQSQQNSDEALNIKRDADPTFDFIG-YLETLPQ 687 Query: 707 L------------WEESHSLAKSYSEYREQELNYDRKRISTRTVTL----NLKQKGFIGG 750 L +Y Y E R +S + L LK+ G Sbjct: 688 TSGMYMGNASIIPRNYRKYLYHAYLAYMEANGY--RNVLSLKMFGLGLPVMLKEYGLNYE 745 Query: 751 IKREKIEKEWK 761 + K + Sbjct: 746 KRHTKQGIQTN 756 >gi|323182012|gb|EFZ67423.1| phage/plasmid primase, P4 family, C-terminal domain protein [Escherichia coli 1357] Length = 777 Score = 150 bits (377), Expect = 1e-33, Method: Composition-based stats. Identities = 60/371 (16%), Positives = 109/371 (29%), Gaps = 60/371 (16%) Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478 R +G ++G+LD + G + ++ F + F + Sbjct: 411 RRLIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVDGETLETHAPAFWRWLDRAAG 470 Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537 E D + M L Q F+ + G GGSGKS + + G +A Sbjct: 471 GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIET 530 Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597 + R L G ++ + + + A +K +TGGD ++ Y + Y Sbjct: 531 LESPR---------ERAALTGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYRDAY 580 Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655 S V N + + RR ++I F + IA RD K+ Sbjct: 581 STHIP-AVILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITR-ELAVI 638 Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGEN 706 + ++ P + + + ++ D +I + Sbjct: 639 VRHLMQ----------KFSDPMLARSLLQSQQNSDEALNIKRDADPTFDFIG-YLETLPQ 687 Query: 707 L------------WEESHSLAKSYSEYREQELNYDRKRISTRTVTL----NLKQKGFIGG 750 L +Y Y E R +S + L LK+ G Sbjct: 688 TSGMYMGNASIIPRNYRKYLYHAYLAYMEANGY--RNVLSLKMFGLGLPVMLKEYGLNYE 745 Query: 751 IKREKIEKEWK 761 + K + Sbjct: 746 KRHTKQGIQTN 756 >gi|320193611|gb|EFW68246.1| DNA primase, phage-associated [Escherichia coli WV_060327] Length = 777 Score = 150 bits (377), Expect = 1e-33, Method: Composition-based stats. Identities = 60/371 (16%), Positives = 108/371 (29%), Gaps = 60/371 (16%) Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478 R +G ++G+LD + G ++ F + F + Sbjct: 411 RRLIGFRNGVLDTQNGTFHPHRPSHWMRTLCDVDFTPPVDGETLETHAPAFWRWLDRAAG 470 Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537 E D + M L Q F+ + G GGSGKS + + G +A Sbjct: 471 GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIET 530 Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597 + R L G ++ + + + A +K +TGGD ++ Y + Y Sbjct: 531 LESPR---------ERAALTGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYRDAY 580 Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655 S V N + + RR ++I F + IA RD K+ Sbjct: 581 STHIP-AVILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITR-ELAVI 638 Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGEN 706 + ++ P + + + ++ D +I + Sbjct: 639 VRHLMQ----------KFSDPMLARSLLQSQQNSDEALNIKRDADPTFDFIG-YLETLPQ 687 Query: 707 L------------WEESHSLAKSYSEYREQELNYDRKRISTRTVTL----NLKQKGFIGG 750 L +Y Y E R +S + L LK+ G Sbjct: 688 TSGMYMGNASIIPRNYRKYLYHAYLAYMEANGY--RNVLSLKMFGLGLPVMLKEYGLNYE 745 Query: 751 IKREKIEKEWK 761 + K + Sbjct: 746 KRHTKQGIQTN 756 >gi|315296958|gb|EFU56238.1| nucleoside triphosphatase, D5 family [Escherichia coli MS 16-3] Length = 687 Score = 150 bits (377), Expect = 1e-33, Method: Composition-based stats. Identities = 60/371 (16%), Positives = 109/371 (29%), Gaps = 60/371 (16%) Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478 R +G ++G+LD + G + ++ F + F + Sbjct: 321 RRLIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVDGETLETHAPAFWRWLDRAAG 380 Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537 E D + M L Q F+ + G GGSGKS + + G +A Sbjct: 381 GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIET 440 Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597 + R L G ++ + + + A +K +TGGD ++ Y + Y Sbjct: 441 LESPR---------ERAALTGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYRDAY 490 Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655 S V N + + RR ++I F + IA RD K+ Sbjct: 491 STHIP-AVILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITR-ELAVI 548 Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGEN 706 + ++ P + + + ++ D +I + Sbjct: 549 VRHLMQ----------KFSDPMLARSLLQSQQNSDEALNIKRDADPTFDFIG-YLETLPQ 597 Query: 707 L------------WEESHSLAKSYSEYREQELNYDRKRISTRTVTL----NLKQKGFIGG 750 L +Y Y E R +S + L LK+ G Sbjct: 598 TSGMYMGNASIIPRNYRKYLYHAYLAYMEANGY--RNVLSLKMFGLGLPVMLKEYGLNYE 655 Query: 751 IKREKIEKEWK 761 + K + Sbjct: 656 KRHTKQGIQTN 666 >gi|300905045|ref|ZP_07122855.1| nucleoside triphosphatase, D5 family [Escherichia coli MS 84-1] gi|301305722|ref|ZP_07211809.1| nucleoside triphosphatase, D5 family [Escherichia coli MS 124-1] gi|300403032|gb|EFJ86570.1| nucleoside triphosphatase, D5 family [Escherichia coli MS 84-1] gi|300838976|gb|EFK66736.1| nucleoside triphosphatase, D5 family [Escherichia coli MS 124-1] gi|315252798|gb|EFU32766.1| nucleoside triphosphatase, D5 family [Escherichia coli MS 85-1] Length = 777 Score = 150 bits (377), Expect = 1e-33, Method: Composition-based stats. Identities = 60/371 (16%), Positives = 109/371 (29%), Gaps = 60/371 (16%) Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478 R +G ++G+LD + G + ++ F + F + Sbjct: 411 RRLIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVDGETLETHAPAFWRWLDRAAG 470 Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537 E D + M L Q F+ + G GGSGKS + + G +A Sbjct: 471 GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIET 530 Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597 + R L G ++ + + + A +K +TGGD ++ Y + Y Sbjct: 531 LESPR---------ERAALTGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYRDAY 580 Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655 S V N + + RR ++I F + IA RD K+ Sbjct: 581 STHIP-AVILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITR-ELAVI 638 Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGEN 706 + ++ P + + + ++ D +I + Sbjct: 639 VRHLMQ----------KFSDPMLARSLLQSQQNSDEALNIKRDADPTFDFIG-YLETLPQ 687 Query: 707 L------------WEESHSLAKSYSEYREQELNYDRKRISTRTVTL----NLKQKGFIGG 750 L +Y Y E R +S + L LK+ G Sbjct: 688 TSGMYMGNASIIPRNYRKYLYHAYLAYMEANGY--RNVLSLKMFGLGLPVMLKEYGLNYE 745 Query: 751 IKREKIEKEWK 761 + K + Sbjct: 746 KRHTKQGIQTN 756 >gi|218547850|ref|YP_002381641.1| phage DNA primase [Escherichia fergusonii ATCC 35469] gi|218355391|emb|CAQ88000.1| phage DNA primase [Escherichia fergusonii ATCC 35469] Length = 777 Score = 150 bits (377), Expect = 1e-33, Method: Composition-based stats. Identities = 60/371 (16%), Positives = 109/371 (29%), Gaps = 60/371 (16%) Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478 R +G ++G+LD + G + ++ F + F + Sbjct: 411 RRLIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVDGETLETHAPAFWRWLDRAAG 470 Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537 E D + M L Q F+ + G GGSGKS + + G +A Sbjct: 471 GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIET 530 Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597 + R L G ++ + + + A +K +TGGD ++ Y + Y Sbjct: 531 LESPR---------ERAALTGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYRDAY 580 Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655 S V N + + RR ++I F + IA RD K+ Sbjct: 581 STHIP-AVILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITR-ELAVI 638 Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGEN 706 + ++ P + + + ++ D +I + Sbjct: 639 VRHLMQ----------KFSDPMLARSLLQSQQNSDEALNIKRDADPTFDFIG-YLETLPQ 687 Query: 707 L------------WEESHSLAKSYSEYREQELNYDRKRISTRTVTL----NLKQKGFIGG 750 L +Y Y E R +S + L LK+ G Sbjct: 688 TSGMYMGNASIIPRNYRKYLYHAYLAYMEANGY--RNVLSLKMFGLGLPVMLKEYGLNYE 745 Query: 751 IKREKIEKEWK 761 + K + Sbjct: 746 KRHTKQGIQTN 756 >gi|170679915|ref|YP_001745974.1| D5 family nucleoside triphosphatase [Escherichia coli SMS-3-5] gi|170517633|gb|ACB15811.1| nucleoside triphosphatase, D5 family [Escherichia coli SMS-3-5] Length = 777 Score = 150 bits (377), Expect = 1e-33, Method: Composition-based stats. Identities = 60/371 (16%), Positives = 109/371 (29%), Gaps = 60/371 (16%) Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478 R +G ++G+LD + G + ++ F + F + Sbjct: 411 RRLIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVDGETLETHAPAFWRWLDRAAG 470 Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537 E D + M L Q F+ + G GGSGKS + + G +A Sbjct: 471 GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIET 530 Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597 + R L G ++ + + + A +K +TGGD ++ Y + Y Sbjct: 531 LESPR---------ERAALTGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYRDAY 580 Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655 S V N + + RR ++I F + IA RD K+ Sbjct: 581 STHIP-AVILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITR-ELAVI 638 Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGEN 706 + ++ P + + + ++ D +I + Sbjct: 639 VRHLMQ----------KFSDPMLARSLLQSQQNSDEALNIKRDADPTFDFIG-YLETLPQ 687 Query: 707 L------------WEESHSLAKSYSEYREQELNYDRKRISTRTVTL----NLKQKGFIGG 750 L +Y Y E R +S + L LK+ G Sbjct: 688 TSGMYMGNASIIPRNYRKYLYHAYLAYMEANGY--RNVLSLKMFGLGLPVMLKEYGLNYE 745 Query: 751 IKREKIEKEWK 761 + K + Sbjct: 746 KRHTKQGIQTN 756 >gi|9627512|ref|NP_042036.1| DNA primase [Enterobacteria phage P4] gi|130905|sp|P10277|PRIM_BPP4 RecName: Full=Putative P4-specific DNA primase gi|75895|pir||RPBPP4 DNA primase - satellite phage P4 gi|15152|emb|CAA29111.1| unnamed protein product [Enterobacteria phage P4] gi|15158|emb|CAA35898.1| unnamed protein product [Enterobacteria phage P4] Length = 777 Score = 150 bits (377), Expect = 1e-33, Method: Composition-based stats. Identities = 60/371 (16%), Positives = 109/371 (29%), Gaps = 60/371 (16%) Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478 R +G ++G+LD + G + ++ F + F + Sbjct: 411 RRLIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVDGETLETHAPAFWRWLDRAAG 470 Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537 E D + M L Q F+ + G GGSGKS + + G +A Sbjct: 471 GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIET 530 Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597 + R L G ++ + + + A +K +TGGD ++ Y + Y Sbjct: 531 LESPR---------ERAALTGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYRDAY 580 Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655 S V N + + RR ++I F + IA RD K+ Sbjct: 581 STHIP-AVILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITR-ELAVI 638 Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGEN 706 + ++ P + + + ++ D +I + Sbjct: 639 VRHLMQ----------KFSDPMLARSLLQSQQNSDEALNIKRDADPTFDFIG-YLETLPQ 687 Query: 707 L------------WEESHSLAKSYSEYREQELNYDRKRISTRTVTL----NLKQKGFIGG 750 L +Y Y E R +S + L LK+ G Sbjct: 688 TSGMYMGNASIIPRNYRKYLYHAYLAYMEANGY--RNVLSLKMFGLGLPVMLKEYGLNYE 745 Query: 751 IKREKIEKEWK 761 + K + Sbjct: 746 KRHTKQGIQTN 756 >gi|168041210|ref|XP_001773085.1| predicted protein [Physcomitrella patens subsp. patens] gi|162675632|gb|EDQ62125.1| predicted protein [Physcomitrella patens subsp. patens] Length = 378 Score = 150 bits (377), Expect = 1e-33, Method: Composition-based stats. Identities = 65/270 (24%), Positives = 118/270 (43%), Gaps = 18/270 (6%) Query: 357 NFLVSMKEDVFDLSEE-PEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIF 415 L M + + D+ E E +K F ++D RR+ + ++ Sbjct: 120 EILTGMYKFIADICESYMETIELATKIIDFIQSSDNRRKMMYICARM----------LYK 169 Query: 416 SITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPS----QEFLD 471 +LLDS +G + G+ + + + + YIT ST PFV + + E LD Sbjct: 170 EGFEELLDSRRDVIGMKGGVYNFTEDRFRRMELDDYITLSTKIPFVPLDYNSEATNEVLD 229 Query: 472 LVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVI 531 L++ F ++ + YF R + L G N + F G G + K+ +++L++ AFG+ + Sbjct: 230 LLAKVFLNKNIRRYFMRFISSCLEGRNANKIFSIWSGSGDNRKTVMVSLVERAFGDYAI- 288 Query: 532 NAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARL 591 S +M R ++ A P L L G I ++ E +E D++N +K++TG + + R Sbjct: 289 KMPTSLLMGKR-VQSSTATPQLAMLKGRLITLVQEPDEGDKLNLGVMKELTGNNSLYVRG 347 Query: 592 NYGNTYSESPASFTPFIVPNKHLFVRNPDD 621 Y P ++ N+ L + D Sbjct: 348 LYEEGTI-IPQKAKFILIANRILQMSIFDK 376 >gi|253689633|ref|YP_003018823.1| phage/plasmid primase, P4 family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251756211|gb|ACT14287.1| phage/plasmid primase, P4 family [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 775 Score = 150 bits (377), Expect = 1e-33, Method: Composition-based stats. Identities = 68/445 (15%), Positives = 133/445 (29%), Gaps = 70/445 (15%) Query: 364 EDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLD 423 E F + R + Q + S +L+ Sbjct: 354 ETFFQYQNGAWKVLPHRLLSRDIAALFQKIQAPFTAAGIDSVINTLKLIVPMQEA----- 408 Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEG-------EPSQEFLDLVSGY 476 S R +G ++G+ D +G+ +E ++ + + + F ++ Sbjct: 409 SQRRLIGFRNGVFDTASGEFKPHRREHWLHTVNDVDYTPFKAGENLADNAPHFWRWLTRA 468 Query: 477 FES-EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535 + + + + M L Q F+ + G GGSGKS L + G+ A Sbjct: 469 AGNHPDKQERILAALFMVLANCYDWQLFLEVTGPGGSGKSILAEITTMLAGDDNTTAATI 528 Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595 + I +R + ++G ++++ + + A IK +TGGD + Y + Sbjct: 529 NTIESSRERSS---------IIGFSLIVLPDQEKWSGDGAG-IKAITGGDAVMVDPKYRD 578 Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTL 653 YS V N + + RR ++I F + I RD +K+ Sbjct: 579 AYSTRIP-AVILAVNNSPMRFSDRSGGVSRRRVIIHFGETIPASERDPKLKEKI-RAELA 636 Query: 654 EAKKWFLKGVKAYISKGLDVDIPEVCLKAKE---------EERQGTDTYQAWIDDCC--- 701 + +K + P + E ++ D + C Sbjct: 637 VIVRHLMK----------RFEEPNDARTLLQAQQHSAEALEIKRQADPLVDF----CGYL 682 Query: 702 ------------DIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIG 749 + L +Y + E + +K IS L + Sbjct: 683 LAHSDTTGLYMGNANITPRNPRKYLYHAYLSFMESHGH--QKPISLTAFGKVLPN--MMS 738 Query: 750 GIKREKIEKEWKSKRIIKGLKLKPA 774 + ++ K I L+LK Sbjct: 739 EYGQSYLKGRTKQG-IQTNLELKDE 762 >gi|325109860|ref|YP_004270928.1| Bifunctional DNA primase/polymerase [Planctomyces brasiliensis DSM 5305] gi|324970128|gb|ADY60906.1| Bifunctional DNA primase/polymerase [Planctomyces brasiliensis DSM 5305] Length = 660 Score = 149 bits (376), Expect = 1e-33, Method: Composition-based stats. Identities = 49/275 (17%), Positives = 79/275 (28%), Gaps = 31/275 (11%) Query: 10 AKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKL----PACGFGFVCGVGEQPL 65 A Q NGF++ P K P ++ E+I++ P G L Sbjct: 20 AVQYAENGFRVFPCVPNGKSPATKNGCKDATDDVEQIEQWWTQTPDANIGIAT----DGL 75 Query: 66 YAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGH 125 DID D T D L + + + L + ++E Sbjct: 76 VVVDIDGAD-HPWLTDPDRMAELAKNAMAVTPRGGRHLYFAQGDEEIGCSVSKLADK--- 131 Query: 126 LDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLV 185 +DI G Y VA KEY W+ + + E Sbjct: 132 VDIRANGGYVVAPPSTV-NGKEYRWSNSFELGGRSELSAVPESI--------------SG 176 Query: 186 KDKKSIIPSKTWTNNNNRQYTNREITAF-LSCFGEEFYNGSHDEWIPVVMAVHHETRGSS 244 ++ + + + A + + D+W+ V MA+H S Sbjct: 177 PLRRPKNDQQQPVQQDGIFSIAEKAEALTILSRLPLECCDNRDDWLRVGMALHSV---SP 233 Query: 245 KGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGD 279 + WSK + + W FD E G Sbjct: 234 QLLPDWVIWSKLSAKFQPGVCERSWRGFDRERAGG 268 >gi|323944124|gb|EGB40204.1| poxvirus D5 protein [Escherichia coli H120] Length = 780 Score = 149 bits (376), Expect = 2e-33, Method: Composition-based stats. Identities = 60/371 (16%), Positives = 109/371 (29%), Gaps = 60/371 (16%) Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478 R +G ++G+LD + G + ++ F + F + Sbjct: 411 RRLIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVEGETLENHAPAFWRWLDRAAG 470 Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537 E D + M L Q F+ + G GGSGKS + + G +A Sbjct: 471 GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIET 530 Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597 + R L G ++ + + + A +K +TGGD ++ Y + Y Sbjct: 531 LESPR---------ERAALTGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYRDAY 580 Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655 S V N + + RR ++I F + IA RD K+ Sbjct: 581 STHIP-AVILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITR-ELAVI 638 Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGEN 706 + ++ P + + + ++ D +I + Sbjct: 639 VRHLMQ----------KFSDPMLARSLLQSQQNSDEALNIKRDADPTFDFIG-YLETLPQ 687 Query: 707 L------------WEESHSLAKSYSEYREQELNYDRKRISTRTVTL----NLKQKGFIGG 750 L +Y Y E R +S + L LK+ G Sbjct: 688 TSGMYMGNASIIPRNYRKYLYHAYLAYMEANGY--RNVLSLKMFGLGLPVMLKEYGLNYE 745 Query: 751 IKREKIEKEWK 761 + K + Sbjct: 746 KRHTKQGIQTN 756 >gi|323181592|gb|EFZ67012.1| phage/plasmid primase, P4 family, C-terminal domain protein [Escherichia coli 1357] Length = 680 Score = 149 bits (376), Expect = 2e-33, Method: Composition-based stats. Identities = 60/371 (16%), Positives = 109/371 (29%), Gaps = 60/371 (16%) Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478 R +G ++G+LD + G + ++ F + F + Sbjct: 314 RRLIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVEGETLETHAPAFWRWLDRAAG 373 Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537 E D + M L Q F+ + G GGSGKS + + G +A Sbjct: 374 GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIET 433 Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597 + R L G ++ + + + A +K +TGGD ++ Y + Y Sbjct: 434 LESPR---------ERAALTGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYRDAY 483 Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655 S V N + + RR ++I F + IA RD K+ Sbjct: 484 STHIP-AVILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITR-ELAVI 541 Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGEN 706 + ++ P + + + ++ D +I + Sbjct: 542 VRHLMQ----------KFSDPMLARSLLQSQQNSDEALNIKRDADPTFDFIG-YLETLPQ 590 Query: 707 L------------WEESHSLAKSYSEYREQELNYDRKRISTRTVTL----NLKQKGFIGG 750 L +Y Y E R +S + L LK+ G Sbjct: 591 TSGMYMGNASIIPRNYRKYLYHAYLAYMEANGY--RNVLSLKMFGLGLPVMLKEYGLNYE 648 Query: 751 IKREKIEKEWK 761 + K + Sbjct: 649 KRHTKQGIQTN 659 >gi|320197261|gb|EFW71877.1| DNA primase, phage-associated [Escherichia coli WV_060327] Length = 777 Score = 149 bits (376), Expect = 2e-33, Method: Composition-based stats. Identities = 60/371 (16%), Positives = 109/371 (29%), Gaps = 60/371 (16%) Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478 R +G ++G+LD + G + ++ F + F + Sbjct: 411 RRLIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVEGETLETHAPAFWRWLDRAAG 470 Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537 E D + M L Q F+ + G GGSGKS + + G +A Sbjct: 471 GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIET 530 Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597 + R L G ++ + + + A +K +TGGD ++ Y + Y Sbjct: 531 LESPR---------ERAALTGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYRDAY 580 Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655 S V N + + RR ++I F + IA RD K+ Sbjct: 581 STHIP-AVILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITR-ELAVI 638 Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGEN 706 + ++ P + + + ++ D +I + Sbjct: 639 VRHLMQ----------KFSDPMLARSLLQSQQNSDEALNIKRDADPTFDFIG-YLETLPQ 687 Query: 707 L------------WEESHSLAKSYSEYREQELNYDRKRISTRTVTL----NLKQKGFIGG 750 L +Y Y E R +S + L LK+ G Sbjct: 688 TSGMYMGNASIIPRNYRKYLYHAYLAYMEANGY--RNVLSLKMFGLGLPVMLKEYGLNYE 745 Query: 751 IKREKIEKEWK 761 + K + Sbjct: 746 KRHTKQGIQTN 756 >gi|331648374|ref|ZP_08349462.1| putative P4-specific DNA primase [Escherichia coli M605] gi|331042121|gb|EGI14263.1| putative P4-specific DNA primase [Escherichia coli M605] Length = 777 Score = 149 bits (376), Expect = 2e-33, Method: Composition-based stats. Identities = 60/371 (16%), Positives = 109/371 (29%), Gaps = 60/371 (16%) Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478 R +G ++G+LD + G + ++ F + F + Sbjct: 411 RRLIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVEGETLETHAPAFWRWLDRAAG 470 Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537 E D + M L Q F+ + G GGSGKS + + G +A Sbjct: 471 GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIET 530 Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597 + R L G ++ + + + A +K +TGGD ++ Y + Y Sbjct: 531 LESPR---------ERAALTGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYRDAY 580 Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655 S V N + + RR ++I F + IA RD K+ Sbjct: 581 STHIP-AVILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITR-ELAVI 638 Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGEN 706 + ++ P + + + ++ D +I + Sbjct: 639 VRHLMQ----------KFSDPMLARSLLQSQQNSDEALNIKRDADPTFDFIG-YLETLPQ 687 Query: 707 L------------WEESHSLAKSYSEYREQELNYDRKRISTRTVTL----NLKQKGFIGG 750 L +Y Y E R +S + L LK+ G Sbjct: 688 TSGMYMGNASIIPRNYRKYLYHAYLAYMEANGY--RNVLSLKMFGLGLPVMLKEYGLNYE 745 Query: 751 IKREKIEKEWK 761 + K + Sbjct: 746 KRHTKQGIQTN 756 >gi|301047471|ref|ZP_07194548.1| nucleoside triphosphatase, D5 family [Escherichia coli MS 185-1] gi|300300586|gb|EFJ56971.1| nucleoside triphosphatase, D5 family [Escherichia coli MS 185-1] Length = 680 Score = 149 bits (376), Expect = 2e-33, Method: Composition-based stats. Identities = 60/371 (16%), Positives = 109/371 (29%), Gaps = 60/371 (16%) Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478 R +G ++G+LD + G + ++ F + F + Sbjct: 314 RRLIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVEGETLENHAPAFWRWLDRAAG 373 Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537 E D + M L Q F+ + G GGSGKS + + G +A Sbjct: 374 GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIET 433 Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597 + R L G ++ + + + A +K +TGGD ++ Y + Y Sbjct: 434 LESPR---------ERAALTGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYRDAY 483 Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655 S V N + + RR ++I F + IA RD K+ Sbjct: 484 STHIP-AVILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITR-ELAVI 541 Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGEN 706 + ++ P + + + ++ D +I + Sbjct: 542 VRHLMQ----------KFSDPMLARSLLQSQQNSDEARNIKRDADPTFDFIG-YLETLPQ 590 Query: 707 L------------WEESHSLAKSYSEYREQELNYDRKRISTRTVTL----NLKQKGFIGG 750 L +Y Y E R +S + L LK+ G Sbjct: 591 TSGMYMGNASIIPRNYRKYLYHAYLAYMEANGY--RNVLSLKMFGLGLPVMLKEYGLNYE 648 Query: 751 IKREKIEKEWK 761 + K + Sbjct: 649 KRHTKQGIQTN 659 >gi|294492921|gb|ADE91677.1| prophage LambdaSa04, DNA primase, P4 family [Escherichia coli IHE3034] Length = 777 Score = 149 bits (376), Expect = 2e-33, Method: Composition-based stats. Identities = 60/371 (16%), Positives = 109/371 (29%), Gaps = 60/371 (16%) Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478 R +G ++G+LD + G + ++ F + F + Sbjct: 411 RRLIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVEGETLETHAPAFWRWLDRAAG 470 Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537 E D + M L Q F+ + G GGSGKS + + G +A Sbjct: 471 GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIET 530 Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597 + R L G ++ + + + A +K +TGGD ++ Y + Y Sbjct: 531 LESPR---------ERAALTGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYRDAY 580 Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655 S V N + + RR ++I F + IA RD K+ Sbjct: 581 STHIP-AVILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITR-ELAVI 638 Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGEN 706 + ++ P + + + ++ D +I + Sbjct: 639 VRHLMQ----------KFSDPMLARSLLQSQQNSDEALNIKRDADPTFDFIG-YLETLPQ 687 Query: 707 L------------WEESHSLAKSYSEYREQELNYDRKRISTRTVTL----NLKQKGFIGG 750 L +Y Y E R +S + L LK+ G Sbjct: 688 TSGMYMGNASIIPRNYRKYLYHAYLAYMEANGY--RNVLSLKMFGLGLPVMLKEYGLNYE 745 Query: 751 IKREKIEKEWK 761 + K + Sbjct: 746 KRHTKQGIQTN 756 >gi|254038870|ref|ZP_04872922.1| nucleoside triphosphatase [Escherichia sp. 1_1_43] gi|226838835|gb|EEH70862.1| nucleoside triphosphatase [Escherichia sp. 1_1_43] Length = 780 Score = 149 bits (376), Expect = 2e-33, Method: Composition-based stats. Identities = 60/371 (16%), Positives = 109/371 (29%), Gaps = 60/371 (16%) Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478 R +G ++G+LD + G + ++ F + F + Sbjct: 411 RRLIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVEGETLETHAPAFWRWLDRAAG 470 Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537 E D + M L Q F+ + G GGSGKS + + G +A Sbjct: 471 GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIET 530 Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597 + R L G ++ + + + A +K +TGGD ++ Y + Y Sbjct: 531 LESPR---------ERAALTGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYRDAY 580 Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655 S V N + + RR ++I F + IA RD K+ Sbjct: 581 STHIP-AVILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITR-ELAVI 638 Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGEN 706 + ++ P + + + ++ D +I + Sbjct: 639 VRHLMQ----------KFSDPMLARSLLQSQQNSDEALNIKRDADPTFDFIG-YLETLPQ 687 Query: 707 L------------WEESHSLAKSYSEYREQELNYDRKRISTRTVTL----NLKQKGFIGG 750 L +Y Y E R +S + L LK+ G Sbjct: 688 TSGMYMGNASIIPRNYRKYLYHAYLAYMEANGY--RNVLSLKMFGLGLPVMLKEYGLNYE 745 Query: 751 IKREKIEKEWK 761 + K + Sbjct: 746 KRHTKQGIQTN 756 >gi|195957614|gb|ACG59723.1| nucleoside triphosphatase [Escherichia coli] Length = 777 Score = 149 bits (376), Expect = 2e-33, Method: Composition-based stats. Identities = 60/371 (16%), Positives = 109/371 (29%), Gaps = 60/371 (16%) Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478 R +G ++G+LD + G + ++ F + F + Sbjct: 411 RRLIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVEGETLETHAPAFWRWLDRAAG 470 Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537 E D + M L Q F+ + G GGSGKS + + G +A Sbjct: 471 GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIET 530 Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597 + R L G ++ + + + A +K +TGGD ++ Y + Y Sbjct: 531 LESPR---------ERAALTGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYRDAY 580 Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655 S V N + + RR ++I F + IA RD K+ Sbjct: 581 STHIP-AVILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITR-ELAVI 638 Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGEN 706 + ++ P + + + ++ D +I + Sbjct: 639 VRHLMQ----------KFSDPMLARSLLQSQQNSDEALNIKRDADPTFDFIG-YLETLPQ 687 Query: 707 L------------WEESHSLAKSYSEYREQELNYDRKRISTRTVTL----NLKQKGFIGG 750 L +Y Y E R +S + L LK+ G Sbjct: 688 TSGMYMGNASIIPRNYRKYLYHAYLAYMEANGY--RNVLSLKMFGLGLPVMLKEYGLNYE 745 Query: 751 IKREKIEKEWK 761 + K + Sbjct: 746 KRHTKQGIQTN 756 >gi|168785548|ref|ZP_02810555.1| nucleoside triphosphatase, D5 family [Escherichia coli O157:H7 str. EC869] gi|189374573|gb|EDU92989.1| nucleoside triphosphatase, D5 family [Escherichia coli O157:H7 str. EC869] gi|195957495|gb|ACG59606.1| D5 family nucleoside triphosphatase [Escherichia coli O157:H7] Length = 777 Score = 149 bits (376), Expect = 2e-33, Method: Composition-based stats. Identities = 60/371 (16%), Positives = 109/371 (29%), Gaps = 60/371 (16%) Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478 R +G ++G+LD + G + ++ F + F + Sbjct: 411 RRLIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVEGETLETHAPAFWRWLDRAAG 470 Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537 E D + M L Q F+ + G GGSGKS + + G +A Sbjct: 471 GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIET 530 Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597 + R L G ++ + + + A +K +TGGD ++ Y + Y Sbjct: 531 LESPR---------ERAALTGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYRDAY 580 Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655 S V N + + RR ++I F + IA RD K+ Sbjct: 581 STHIP-AVILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITR-ELAVI 638 Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGEN 706 + ++ P + + + ++ D +I + Sbjct: 639 VRHLMQ----------KFSDPMLARSLLQSQQNSDEALNIKRDADPTFDFIG-YLETLPQ 687 Query: 707 L------------WEESHSLAKSYSEYREQELNYDRKRISTRTVTL----NLKQKGFIGG 750 L +Y Y E R +S + L LK+ G Sbjct: 688 TSGMYMGNASIIPRNYRKYLYHAYLAYMEANGY--RNVLSLKMFGLGLPVMLKEYGLNYE 745 Query: 751 IKREKIEKEWK 761 + K + Sbjct: 746 KRHTKQGIQTN 756 >gi|170018102|ref|YP_001723056.1| P4 family phage/plasmid primase [Escherichia coli ATCC 8739] gi|169753030|gb|ACA75729.1| phage/plasmid primase, P4 family [Escherichia coli ATCC 8739] Length = 777 Score = 149 bits (376), Expect = 2e-33, Method: Composition-based stats. Identities = 60/371 (16%), Positives = 109/371 (29%), Gaps = 60/371 (16%) Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478 R +G ++G+LD + G + ++ F + F + Sbjct: 411 RRLIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVEGETLETHAPAFWRWLDRAAG 470 Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537 E D + M L Q F+ + G GGSGKS + + G +A Sbjct: 471 GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIET 530 Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597 + R L G ++ + + + A +K +TGGD ++ Y + Y Sbjct: 531 LESPR---------ERAALTGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYRDAY 580 Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655 S V N + + RR ++I F + IA RD K+ Sbjct: 581 STHIP-AVILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITR-ELAVI 638 Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGEN 706 + ++ P + + + ++ D +I + Sbjct: 639 VRHLMQ----------KFSDPMLARSLLQSQQNSDEALNIKRDADPTFDFIG-YLETLPQ 687 Query: 707 L------------WEESHSLAKSYSEYREQELNYDRKRISTRTVTL----NLKQKGFIGG 750 L +Y Y E R +S + L LK+ G Sbjct: 688 TSGMYMGNASIIPRNYRKYLYHAYLAYMEANGY--RNVLSLKMFGLGLPVMLKEYGLNYE 745 Query: 751 IKREKIEKEWK 761 + K + Sbjct: 746 KRHTKQGIQTN 756 >gi|82546473|ref|YP_410420.1| DNA primase [Shigella boydii Sb227] gi|81247884|gb|ABB68592.1| putative DNA primase [Shigella boydii Sb227] gi|320184529|gb|EFW59331.1| DNA primase , phage-associated [Shigella flexneri CDC 796-83] gi|332086985|gb|EGI92119.1| phage/plasmid primase, P4 family, C-terminal domain protein [Shigella boydii 3594-74] Length = 777 Score = 149 bits (376), Expect = 2e-33, Method: Composition-based stats. Identities = 60/371 (16%), Positives = 109/371 (29%), Gaps = 60/371 (16%) Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478 R +G ++G+LD + G + ++ F + F + Sbjct: 411 RRLIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVEGETLETHAPAFWRWLDRAAG 470 Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537 E D + M L Q F+ + G GGSGKS + + G +A Sbjct: 471 GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIET 530 Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597 + R L G ++ + + + A +K +TGGD ++ Y + Y Sbjct: 531 LESPR---------ERAALTGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYRDAY 580 Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655 S V N + + RR ++I F + IA RD K+ Sbjct: 581 STHIP-AVILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITR-ELAVI 638 Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGEN 706 + ++ P + + + ++ D +I + Sbjct: 639 VRHLMQ----------KFSDPMLARSLLQSQQNSDEALNIKRDADPTFDFIG-YLETLPQ 687 Query: 707 L------------WEESHSLAKSYSEYREQELNYDRKRISTRTVTL----NLKQKGFIGG 750 L +Y Y E R +S + L LK+ G Sbjct: 688 TSGMYMGNASIIPRNYRKYLYHAYLAYMEANGY--RNVLSLKMFGLGLPVMLKEYGLNYE 745 Query: 751 IKREKIEKEWK 761 + K + Sbjct: 746 KRHTKQGIQTN 756 >gi|29143025|ref|NP_806367.1| hypothetical protein t2656 [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|29138658|gb|AAO70227.1| hypothetical protein t2656 [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] Length = 777 Score = 149 bits (376), Expect = 2e-33, Method: Composition-based stats. Identities = 60/371 (16%), Positives = 109/371 (29%), Gaps = 60/371 (16%) Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478 R +G ++G+LD + G + ++ F + F + Sbjct: 411 RRLIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVEGETLETHAPAFWRWLDRAAG 470 Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537 E D + M L Q F+ + G GGSGKS + + G +A Sbjct: 471 GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIET 530 Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597 + R L G ++ + + + A +K +TGGD ++ Y + Y Sbjct: 531 LESPR---------ERAALTGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYRDAY 580 Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655 S V N + + RR ++I F + IA RD K+ Sbjct: 581 STHIP-AVILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITR-ELAVI 638 Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGEN 706 + ++ P + + + ++ D +I + Sbjct: 639 VRHLMQ----------KFSDPMLARSLLQSQQNSDEALNIKRDADPTFDFIG-YLETLPQ 687 Query: 707 L------------WEESHSLAKSYSEYREQELNYDRKRISTRTVTL----NLKQKGFIGG 750 L +Y Y E R +S + L LK+ G Sbjct: 688 TSGMYMGNASIIPRNYRKYLYHAYLAYMEANGY--RNVLSLKMFGLGLPVMLKEYGLNYE 745 Query: 751 IKREKIEKEWK 761 + K + Sbjct: 746 KRHTKQGIQTN 756 >gi|191170424|ref|ZP_03031977.1| nucleoside triphosphatase, D5 family [Escherichia coli F11] gi|300988773|ref|ZP_07178815.1| nucleoside triphosphatase, D5 family [Escherichia coli MS 200-1] gi|190909232|gb|EDV68818.1| nucleoside triphosphatase, D5 family [Escherichia coli F11] gi|300305841|gb|EFJ60361.1| nucleoside triphosphatase, D5 family [Escherichia coli MS 200-1] gi|324012684|gb|EGB81903.1| nucleoside triphosphatase, D5 family [Escherichia coli MS 60-1] Length = 777 Score = 149 bits (376), Expect = 2e-33, Method: Composition-based stats. Identities = 60/371 (16%), Positives = 109/371 (29%), Gaps = 60/371 (16%) Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478 R +G ++G+LD + G + ++ F + F + Sbjct: 411 RRLIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVEGETLETHAPAFWRWLDRAAG 470 Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537 E D + M L Q F+ + G GGSGKS + + G +A Sbjct: 471 GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIET 530 Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597 + R L G ++ + + + A +K +TGGD ++ Y + Y Sbjct: 531 LESPR---------ERAALTGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYRDAY 580 Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655 S V N + + RR ++I F + IA RD K+ Sbjct: 581 STHIP-AVILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITR-ELAVI 638 Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGEN 706 + ++ P + + + ++ D +I + Sbjct: 639 VRHLMQ----------KFSDPMLARSLLQSQQNSDEALNIKRDADPTFDFIG-YLETLPQ 687 Query: 707 L------------WEESHSLAKSYSEYREQELNYDRKRISTRTVTL----NLKQKGFIGG 750 L +Y Y E R +S + L LK+ G Sbjct: 688 TSGMYMGNASIIPRNYRKYLYHAYLAYMEANGY--RNVLSLKMFGLGLPVMLKEYGLNYE 745 Query: 751 IKREKIEKEWK 761 + K + Sbjct: 746 KRHTKQGIQTN 756 >gi|256021327|ref|ZP_05435192.1| P4 family phage/plasmid primase [Shigella sp. D9] gi|332282561|ref|ZP_08394974.1| DNA primase [Shigella sp. D9] gi|332104913|gb|EGJ08259.1| DNA primase [Shigella sp. D9] Length = 777 Score = 149 bits (376), Expect = 2e-33, Method: Composition-based stats. Identities = 59/369 (15%), Positives = 108/369 (29%), Gaps = 60/369 (16%) Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE-S 479 +G ++G+LD + G + ++ F + F + Sbjct: 413 LIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVDGETLETHAPAFWRWLDRAAGGR 472 Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539 E D + M L Q F+ + G GGSGKS + + G +A + Sbjct: 473 AEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIETLE 532 Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599 R L G ++ + + + A +K +TGGD ++ Y + YS Sbjct: 533 SPR---------ERAALTGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYRDAYST 582 Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKK 657 V N + + RR ++I F + IA RD K+ + Sbjct: 583 HIP-AVILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITR-ELAVIVR 640 Query: 658 WFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGENL- 707 ++ P + + + ++ D +I + Sbjct: 641 HLMQ----------KFSDPMLARSLLQSQQNSDEALNIKRDADPTFDFIG-YLETLPQTS 689 Query: 708 -----------WEESHSLAKSYSEYREQELNYDRKRISTRTVTL----NLKQKGFIGGIK 752 L +Y Y E R +S + L LK+ G + Sbjct: 690 GMYMGNASIIPRNYRKYLYHAYLAYMEANGY--RNVLSLKMFGLGLPVMLKEYGLNYEKR 747 Query: 753 REKIEKEWK 761 K + Sbjct: 748 HTKQGIQTN 756 >gi|193070938|ref|ZP_03051869.1| nucleoside triphosphatase, D5 family [Escherichia coli E110019] gi|192955792|gb|EDV86264.1| nucleoside triphosphatase, D5 family [Escherichia coli E110019] Length = 783 Score = 149 bits (376), Expect = 2e-33, Method: Composition-based stats. Identities = 59/369 (15%), Positives = 108/369 (29%), Gaps = 60/369 (16%) Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE-S 479 +G ++G+LD + G + ++ F + F + Sbjct: 419 LIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVDGETLETHAPAFWRWLDRAAGGR 478 Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539 E D + M L Q F+ + G GGSGKS + + G +A + Sbjct: 479 AEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIETLE 538 Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599 R L G ++ + + + A +K +TGGD ++ Y + YS Sbjct: 539 SPR---------ERAALTGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYRDAYST 588 Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKK 657 V N + + RR ++I F + IA RD K+ + Sbjct: 589 HIP-AVILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITR-ELAVIVR 646 Query: 658 WFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGENL- 707 ++ P + + + ++ D +I + Sbjct: 647 HLMQ----------KFSDPMLARSLLQSQQNSDEALNIKRDADPTFDFIG-YLETLPQTS 695 Query: 708 -----------WEESHSLAKSYSEYREQELNYDRKRISTRTVTL----NLKQKGFIGGIK 752 L +Y Y E R +S + L LK+ G + Sbjct: 696 GMYMGNASIIPRNYRKYLYHAYLAYMEANGY--RNVLSLKMFGLGLPVMLKEYGLNYEKR 753 Query: 753 REKIEKEWK 761 K + Sbjct: 754 HTKQGIQTN 762 >gi|324020383|gb|EGB89602.1| nucleoside triphosphatase, D5 family [Escherichia coli MS 117-3] Length = 777 Score = 149 bits (376), Expect = 2e-33, Method: Composition-based stats. Identities = 60/371 (16%), Positives = 110/371 (29%), Gaps = 60/371 (16%) Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478 R +G ++G+LD ++G + ++ F + F + Sbjct: 411 RRLIGFRNGVLDTQSGTFHPHSPSHWMRTLCDVDFTPPVEGETLETHAPAFWRWLDRAAG 470 Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537 E D + M L Q F+ + G GGSGKS + + G +A Sbjct: 471 GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIET 530 Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597 + R L G ++ + + + A +K +TGGD ++ Y + Y Sbjct: 531 LESPR---------ERAALTGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYRDAY 580 Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655 S V N + + RR ++I F + IA RD K+ Sbjct: 581 STHIP-AVILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITR-ELAVI 638 Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGEN 706 + ++ P + + + ++ D +I + Sbjct: 639 VRHLMQ----------KFSDPMLARSLLQSQQNSDEALNIKRDADPTFDFIG-YLETLPQ 687 Query: 707 L------------WEESHSLAKSYSEYREQELNYDRKRISTRTVTL----NLKQKGFIGG 750 L +Y Y E R +S + L LK+ G Sbjct: 688 TSGMYMGNASIIPRNYRKYLYHAYLAYMEANGY--RNVLSLKMFGLGLPVMLKEYGLNYE 745 Query: 751 IKREKIEKEWK 761 + K + Sbjct: 746 KRHTKQGIQTN 756 >gi|323184660|gb|EFZ70032.1| phage/plasmid primase, P4 family, C-terminal domain protein [Escherichia coli 1357] Length = 777 Score = 149 bits (376), Expect = 2e-33, Method: Composition-based stats. Identities = 60/371 (16%), Positives = 110/371 (29%), Gaps = 60/371 (16%) Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478 R +G ++G+LD ++G + ++ F + F + Sbjct: 411 RRLIGFRNGVLDTQSGTFHPHSPSHWMRTLCDVDFTPPVEGETLETHAPAFWRWLDRAAG 470 Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537 E D + M L Q F+ + G GGSGKS + + G +A Sbjct: 471 GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIET 530 Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597 + R L G ++ + + + A +K +TGGD ++ Y + Y Sbjct: 531 LESPR---------ERAALTGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYRDAY 580 Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655 S V N + + RR ++I F + IA RD K+ Sbjct: 581 STHIP-AVILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITR-ELAVI 638 Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGEN 706 + ++ P + + + ++ D +I + Sbjct: 639 VRHLMQ----------KFSDPMLARSLLQSQQNSDEALNIKRDADPTFDFIG-YLETLPQ 687 Query: 707 L------------WEESHSLAKSYSEYREQELNYDRKRISTRTVTL----NLKQKGFIGG 750 L +Y Y E R +S + L LK+ G Sbjct: 688 TSGMYMGNASIIPRNYRKYLYHAYLAYMEANGY--RNVLSLKMFGLGLPVMLKEYGLNYE 745 Query: 751 IKREKIEKEWK 761 + K + Sbjct: 746 KRHTKQGIQTN 756 >gi|315615291|gb|EFU95927.1| phage/plasmid primase, P4 family, C-terminal domain protein [Escherichia coli 3431] Length = 777 Score = 149 bits (376), Expect = 2e-33, Method: Composition-based stats. Identities = 60/371 (16%), Positives = 110/371 (29%), Gaps = 60/371 (16%) Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478 R +G ++G+LD ++G + ++ F + F + Sbjct: 411 RRLIGFRNGVLDTQSGTFHPHSPSHWMRTLCDVDFTPPVEGETLETHAPAFWRWLDRAAG 470 Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537 E D + M L Q F+ + G GGSGKS + + G +A Sbjct: 471 GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIET 530 Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597 + R L G ++ + + + A +K +TGGD ++ Y + Y Sbjct: 531 LESPR---------ERAALTGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYRDAY 580 Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655 S V N + + RR ++I F + IA RD K+ Sbjct: 581 STHIP-AVILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITR-ELAVI 638 Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGEN 706 + ++ P + + + ++ D +I + Sbjct: 639 VRHLMQ----------KFSDPMLARSLLQSQQNSDEALNIKRDADPTFDFIG-YLETLPQ 687 Query: 707 L------------WEESHSLAKSYSEYREQELNYDRKRISTRTVTL----NLKQKGFIGG 750 L +Y Y E R +S + L LK+ G Sbjct: 688 TSGMYMGNASIIPRNYRKYLYHAYLAYMEANGY--RNVLSLKMFGLGLPVMLKEYGLNYE 745 Query: 751 IKREKIEKEWK 761 + K + Sbjct: 746 KRHTKQGIQTN 756 >gi|293415902|ref|ZP_06658542.1| DNA primase [Escherichia coli B185] gi|291432091|gb|EFF05073.1| DNA primase [Escherichia coli B185] Length = 777 Score = 149 bits (375), Expect = 2e-33, Method: Composition-based stats. Identities = 59/369 (15%), Positives = 108/369 (29%), Gaps = 60/369 (16%) Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE-S 479 +G ++G+LD + G + ++ F + F + Sbjct: 413 LIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVEGETLETHAPAFWRWLDRAAGGR 472 Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539 E D + M L Q F+ + G GGSGKS + + G +A + Sbjct: 473 AEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIETLE 532 Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599 R L G ++ + + + A +K +TGGD ++ Y + YS Sbjct: 533 SPR---------ERAALTGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYRDAYST 582 Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKK 657 V N + + RR ++I F + IA RD K+ + Sbjct: 583 HIP-AVILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITR-ELAVIVR 640 Query: 658 WFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGENL- 707 ++ P + + + ++ D +I + Sbjct: 641 HLMQ----------KFSDPMLARSLLQSQQNSDEALNIKRDADPTFDFIG-YLETLPQTS 689 Query: 708 -----------WEESHSLAKSYSEYREQELNYDRKRISTRTVTL----NLKQKGFIGGIK 752 L +Y Y E R +S + L LK+ G + Sbjct: 690 GMYMGNASIIPRNYRKYLYHAYLAYMEANGY--RNVLSLKMFGLGLPVMLKEYGLNYEKR 747 Query: 753 REKIEKEWK 761 K + Sbjct: 748 HTKQGIQTN 756 >gi|168784927|ref|ZP_02809934.1| nucleoside triphosphatase, D5 family [Escherichia coli O157:H7 str. EC869] gi|189374731|gb|EDU93147.1| nucleoside triphosphatase, D5 family [Escherichia coli O157:H7 str. EC869] Length = 777 Score = 149 bits (375), Expect = 2e-33, Method: Composition-based stats. Identities = 59/369 (15%), Positives = 108/369 (29%), Gaps = 60/369 (16%) Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE-S 479 +G ++G+LD + G + ++ F + F + Sbjct: 413 LIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVEGETLETHAPAFWRWLDRAAGGR 472 Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539 E D + M L Q F+ + G GGSGKS + + G +A + Sbjct: 473 AEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIETLE 532 Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599 R L G ++ + + + A +K +TGGD ++ Y + YS Sbjct: 533 SPR---------ERAALTGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYRDAYST 582 Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKK 657 V N + + RR ++I F + IA RD K+ + Sbjct: 583 HIP-AVILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITR-ELAVIVR 640 Query: 658 WFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGENL- 707 ++ P + + + ++ D +I + Sbjct: 641 HLMQ----------KFSDPMLARSLLQSQQNSDEALNIKRDADPTFDFIG-YLETLPQTS 689 Query: 708 -----------WEESHSLAKSYSEYREQELNYDRKRISTRTVTL----NLKQKGFIGGIK 752 L +Y Y E R +S + L LK+ G + Sbjct: 690 GMYMGNASIIPRNYRKYLYHAYLAYMEANGY--RNVLSLKMFGLGLPVMLKEYGLNYEKR 747 Query: 753 REKIEKEWK 761 K + Sbjct: 748 HTKQGIQTN 756 >gi|170019093|ref|YP_001724047.1| P4 family phage/plasmid primase [Escherichia coli ATCC 8739] gi|169754021|gb|ACA76720.1| phage/plasmid primase, P4 family [Escherichia coli ATCC 8739] Length = 777 Score = 149 bits (375), Expect = 2e-33, Method: Composition-based stats. Identities = 59/369 (15%), Positives = 108/369 (29%), Gaps = 60/369 (16%) Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE-S 479 +G ++G+LD + G + ++ F + F + Sbjct: 413 LIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVEGETLETHAPAFWRWLDRAAGGR 472 Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539 E D + M L Q F+ + G GGSGKS + + G +A + Sbjct: 473 AEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIETLE 532 Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599 R L G ++ + + + A +K +TGGD ++ Y + YS Sbjct: 533 SPR---------ERAALTGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYRDAYST 582 Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKK 657 V N + + RR ++I F + IA RD K+ + Sbjct: 583 HIP-AVILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITR-ELAVIVR 640 Query: 658 WFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGENL- 707 ++ P + + + ++ D +I + Sbjct: 641 HLMQ----------KFSDPMLARSLLQSQQNSDEALNIKRDADPTFDFIG-YLETLPQTS 689 Query: 708 -----------WEESHSLAKSYSEYREQELNYDRKRISTRTVTL----NLKQKGFIGGIK 752 L +Y Y E R +S + L LK+ G + Sbjct: 690 GMYMGNASIIPRNYRKYLYHAYLAYMEANGY--RNVLSLKMFGLGLPVMLKEYGLNYEKR 747 Query: 753 REKIEKEWK 761 K + Sbjct: 748 HTKQGIQTN 756 >gi|288932397|ref|YP_003436457.1| Bifunctional DNA primase/polymerase [Ferroglobus placidus DSM 10642] gi|288894645|gb|ADC66182.1| Bifunctional DNA primase/polymerase [Ferroglobus placidus DSM 10642] Length = 882 Score = 149 bits (375), Expect = 2e-33, Method: Composition-based stats. Identities = 91/705 (12%), Positives = 201/705 (28%), Gaps = 95/705 (13%) Query: 10 AKQAIHNGFKLIPL------RLGDKRPQ--RLGKWEEQLLSSEKIDKLPAC--------- 52 A++ + GF +IP+ ++P K++ + E++ Sbjct: 8 AEEYLREGFSVIPVALIRLPDGRSRKPALVDWKKYQLSPPTLEEVRSWFENPEQFEAIRK 67 Query: 53 ----GFGFVCGVGEQPLYAFDIDSKD------EKTANTFKDTFEILHGTPIVRIGQKPKI 102 G V G L D D+++ + + + +E T +V G+ Sbjct: 68 GNKIGIAIVTGSVSGNLAVIDFDNREVLSDFLAELYESDSNLYEKFINTWVVETGK--GF 125 Query: 103 LIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDT 162 R+ K + +DI G + VA + K+Y + P Sbjct: 126 HYYLRVKDPDPKLFHNRIGIREGIDIRAEGGFVVAPPSPHPSGKQYRFVNKPE-----KI 180 Query: 163 PLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFY 222 LS E+ L + + + I +K + + + + + + Y Sbjct: 181 AELSWEEYLTLLRILERNETLPEEGLTEEISAKDSLTSKDERELSESEILEIVNLLKPIY 240 Query: 223 NGSHDE--------WIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENF-NYKWDTFD 273 W+ + + +E + Y D Sbjct: 241 RPGFRNYIILFLTGWLRKAGISYKSAKKIVDLL---------SEKDEERDLRIYVLDRTY 291 Query: 274 FEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAM--FSIYKKGHFLYTADTK 331 +++ + + + + + + S ++ F ++ Sbjct: 292 GLRGNPPSEEELKGKTGLQEIAEKLFGEEKSLELIRRLEEKLGRSSPFRDSIFSLIDFSR 351 Query: 332 AWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDY 391 Y I + + + + + E ED + F+ Sbjct: 352 KLYYVANPRKGIIARAYEDSKNGGIVYKELIAECCPVRVVVYEDPLGGVRKFEIEFDGLL 411 Query: 392 RRQNVEENSKAKSTAQSLEAGS-IFSITSDLLDSSSRFLGE-QDGILDLETGQKVKP--- 446 ++ + + ++ EA + D L S + ++G ++ + Sbjct: 412 KKTIGPADLETIASRLKAEAVVKHKRLVDDALSS--LIIAFIRNGKAEIRRELEKPGFYY 469 Query: 447 -TKELYITKSTGTPFVEGE----------PSQEFLDLVSGYFESEEVMDY-FTRCVGMA- 493 E+ K F + + +E+ ++ F V+ + A Sbjct: 470 IDGEIKAVKWNAEKFTKEDLRKALLLLRELREEWYKHLAERF--TTVIKWGIIAPFSYAI 527 Query: 494 --LLGGNKAQR-FIHIRGVGGSGKSTLMNLIKYA--FGNQYVINAEASDIMQNRPPEAGK 548 + G ++ + G +GKSTL +I+ + + + + + Sbjct: 528 KQIRGTYGIHFPWLLLHGSASTGKSTLGKIIRAIWNLPPEEKGGSHIDTVPRFGKVVSES 587 Query: 549 ANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFI 608 P L I ++E D I +K + + AR Y + +P I Sbjct: 588 TFPVL-------INEVAEVLAKDSIRE-VLKS--SIETLFARGRYVQGVYVEEPALSPMI 637 Query: 609 VPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTL 653 DDA RR+I I F I++R + + L Sbjct: 638 FTTN--KAYPADDALLRRFIGILF--TISDRVKEDKAREFEREVL 678 >gi|324111267|gb|EGC05249.1| poxvirus D5 protein [Escherichia fergusonii B253] Length = 777 Score = 149 bits (375), Expect = 2e-33, Method: Composition-based stats. Identities = 60/371 (16%), Positives = 109/371 (29%), Gaps = 60/371 (16%) Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478 R +G ++G+LD + G + ++ F + F + Sbjct: 411 RRLIGFRNGVLDTQNGTFHPHSPLHWMRTLCDVDFTPPVDGETLETHAPAFWRWLDRAAG 470 Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537 E D + M L Q F+ + G GGSGKS + + G +A Sbjct: 471 GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIET 530 Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597 + R L G ++ + + + A +K +TGGD ++ Y + Y Sbjct: 531 LESPR---------ERAALTGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYRDAY 580 Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655 S V N + + RR ++I F + IA RD K+ Sbjct: 581 STHIP-AVILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITR-ELAVI 638 Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGEN 706 + ++ P + + + ++ D +I + Sbjct: 639 VRHLMQ----------KFSDPMLARSLLQSQQNSDEALNIKRDADPTFDFIG-YLETLPQ 687 Query: 707 L------------WEESHSLAKSYSEYREQELNYDRKRISTRTVTL----NLKQKGFIGG 750 L +Y Y E R +S + L LK+ G Sbjct: 688 TSGMYMGNASIIPRNYRKYLYHAYLAYMEANGY--RNVLSLKMFGLGLPVMLKEYGLNYE 745 Query: 751 IKREKIEKEWK 761 + K + Sbjct: 746 KRHTKQGIQTN 756 >gi|113460678|ref|YP_718744.1| phage DNA primase-like protein [Haemophilus somnus 129PT] gi|112822721|gb|ABI24810.1| phage DNA primase-like protein [Haemophilus somnus 129PT] Length = 636 Score = 148 bits (374), Expect = 2e-33, Method: Composition-based stats. Identities = 68/442 (15%), Positives = 140/442 (31%), Gaps = 57/442 (12%) Query: 368 DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSR 427 + + ++N + F+ + +VE + I + + + Sbjct: 215 QIWQVKDENALQREIKTFFSEYNANYGSVETINNMIKCLTVDLPLFDDEIKAAM---DYQ 271 Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGE-PSQEFLDLVSGYFESE-EVMDY 485 FL ++G+L+ T + KE Y+T ++E + P+ F + E Sbjct: 272 FLAFKNGVLNKRTLAFLPHKKEYYLTAINPCDYLETQTPTPNFDKWLDFISNDSIERKKA 331 Query: 486 FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545 + M L + Q + G GSGKST +N+ K G+ + + + ++ Sbjct: 332 LLAALYMILNNRSDWQLTLEFIGEPGSGKSTFLNVAKMLSGDANHVAIDLETLQRDSKTR 391 Query: 546 AGKANPSLIRLMGSRIVIISETNENDEINAA-KIKQMTGGDCMTARLNYGNTYSESPASF 604 L+ + ++ I + +K ++GGD + T+S + Sbjct: 392 D--------MLLNKTFLYA--PDQGRYIGESSVLKAISGGDEILVNPKGKKTFSA-RINA 440 Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDASFAQKLETKYTLEAKKWFLKG 662 I N +N RR +V PF K I + RD +K++ Sbjct: 441 IIAICSNTLPIYKNDGGGMERRRVVFPFYKAIDDSARDDKLTEKIQ-AELGGII------ 493 Query: 663 VKAYISKGLDVDIPEVCLKAKEEERQ---------GTDTYQAWI----------DDCCDI 703 + + PE +A ++++ D +I +DC + Sbjct: 494 -RKLYDE---FKDPEDAKQALKQQKASAEALKMKTENDHILEFIQEFELISQPSNDCLIL 549 Query: 704 GENLWEESHS-------LAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKI 756 G + ++ Y Y + + + Q F ++ Sbjct: 550 GSSRGIPAYESPLIFERFYWCYLYYCYITGREGKFILKPVEFKKEVIQA-FKTIGEKPFT 608 Query: 757 EKEWKSKRIIKGLKLKPAFESV 778 ++ K K E+V Sbjct: 609 ARQLGGGYNYTNAKFKNKHETV 630 >gi|296101066|ref|YP_003611212.1| nucleoside triphosphatase, D5 family [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295055525|gb|ADF60263.1| nucleoside triphosphatase, D5 family [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 556 Score = 148 bits (374), Expect = 3e-33, Method: Composition-based stats. Identities = 60/373 (16%), Positives = 114/373 (30%), Gaps = 64/373 (17%) Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478 R +G ++G+LD ++G +K ++ F + F + Sbjct: 190 RRLIGFRNGVLDTQSGLFSPHSKSYWLRTLCDVDFTPPVEGETLETHAPNFWRWLDRAAG 249 Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537 + + D + M L Q F+ + G GGSGKS L + G +A+ Sbjct: 250 KNPQKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATLLAGEDNATSADIDT 309 Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597 + R L+G ++ + + + A +K +TGGD ++ Y N Y Sbjct: 310 LEDPRKR---------ASLIGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYQNPY 359 Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEA 655 S V N + + RR ++I F + I RD K+ Sbjct: 360 STHIP-AVILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPEERDPQLRDKIAR-ELAVI 417 Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTY------------- 693 + ++ P + + ++ D Sbjct: 418 VRQLMQ----------KFSDPMAARALLQSQQNSDEALSIKRDADPTFDFCGYLEMLPQT 467 Query: 694 -QAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVT----LNLKQKGFI 748 ++ + + N L +Y Y E R +S + + LK+ G Sbjct: 468 NGMFMGNASIVPRNYR---KYLYHAYLAYMEANGY--RNVLSLKMFGLGLPMMLKEYGLN 522 Query: 749 GGIKREKIEKEWK 761 + K + Sbjct: 523 YEKRHTKQGIQTN 535 >gi|331671414|ref|ZP_08372212.1| putative P4-specific DNA primase [Escherichia coli TA280] gi|331071259|gb|EGI42616.1| putative P4-specific DNA primase [Escherichia coli TA280] Length = 777 Score = 148 bits (374), Expect = 3e-33, Method: Composition-based stats. Identities = 61/371 (16%), Positives = 110/371 (29%), Gaps = 60/371 (16%) Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478 R +G ++G+LD + G + ++ F + F + Sbjct: 411 RRLIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVDGETLETHAPAFWRWLDRAAG 470 Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537 E D + M L Q F+ + G GGSGKS + + G +A Sbjct: 471 GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIET 530 Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597 + R L G ++ + + + A +K +TGGD ++ Y + Y Sbjct: 531 LESPR---------ERAALTGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYRDAY 580 Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655 S V N + + RR ++I F + IA RD K+ T Sbjct: 581 STHIP-AVILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKI-THELAVI 638 Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGEN 706 + ++ P + + + ++ D +I + Sbjct: 639 VRHLMQ----------KFSDPMLARSLLQSQQNSDEALNIKRDADPTFDFIG-YLETLPQ 687 Query: 707 L------------WEESHSLAKSYSEYREQELNYDRKRISTRTVTL----NLKQKGFIGG 750 L +Y Y E R +S + L LK+ G Sbjct: 688 TSGMYMGNASIIPRNYRKYLYHAYLAYMEANGY--RNVLSLKMFGLGLPVMLKEYGLNYE 745 Query: 751 IKREKIEKEWK 761 + K + Sbjct: 746 KRHTKQGIQTN 756 >gi|284923731|emb|CBG36828.1| putative prophage DNA primase [Escherichia coli 042] Length = 777 Score = 148 bits (373), Expect = 3e-33, Method: Composition-based stats. Identities = 60/371 (16%), Positives = 109/371 (29%), Gaps = 60/371 (16%) Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478 R +G ++G+LD + G + ++ F + F + Sbjct: 411 RRLIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVDGETLETHAPAFWRWLDRAAG 470 Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537 E D + M L Q F+ + G GGSGKS + + G +A Sbjct: 471 GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIET 530 Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597 + R L G ++ + + + A +K +TGGD ++ Y + Y Sbjct: 531 LESPR---------ERAALTGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYRDAY 580 Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655 S V N + + RR ++I F + IA RD K+ Sbjct: 581 STHIP-AVIRAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITR-ELAVI 638 Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGEN 706 + ++ P + + + ++ D +I + Sbjct: 639 VRHLMQ----------KFSDPMLARSLLQSQQNSDEALNIKRDADPTFDFIG-YLETLPQ 687 Query: 707 L------------WEESHSLAKSYSEYREQELNYDRKRISTRTVTL----NLKQKGFIGG 750 L +Y Y E R +S + L LK+ G Sbjct: 688 TSGMYMGNASIIPRNYRKYLYHAYLAYMEANGY--RNVLSLKMFGLGLPVMLKEYGLNYE 745 Query: 751 IKREKIEKEWK 761 + K + Sbjct: 746 KRHTKQGIQTN 756 >gi|269219193|ref|ZP_06163047.1| primase [Actinomyces sp. oral taxon 848 str. F0332] gi|269211340|gb|EEZ77680.1| primase [Actinomyces sp. oral taxon 848 str. F0332] Length = 617 Score = 148 bits (373), Expect = 4e-33, Method: Composition-based stats. Identities = 57/351 (16%), Positives = 126/351 (35%), Gaps = 35/351 (9%) Query: 412 GSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE--- 468 +I + + ++++ + ++G+ + ET Q T E + + S Sbjct: 202 RTIVPVVDETMEAN--LVPVRNGVYNTETKQLEAFTPERVFLTKSPVRYDPQAVSPTKTL 259 Query: 469 -------FLDLVSGYFE-SEEVMDYFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLMN 519 F ++ F+ EE + F V +L + + + F G SGKSTL++ Sbjct: 260 SDGDTWTFDCWLADLFDEDEERVTLFWEIVAASLRVYKSYEKAFFFYSSSGSSGKSTLLH 319 Query: 520 LIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK-I 578 L++ G + + ++ E ++G V+ ET+ + + K Sbjct: 320 LMRNILGQRNCASLSLGAFGKDFGCEP---------VLGVSAVLTDETDTHGFMKECKEF 370 Query: 579 KQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN 638 KQ D +T + + N+ + +A RR+I +PFD+ A Sbjct: 371 KQYVTHDVITIQRKGVKA-VQWKPRGIVIQAGNELPEFSDKTEAMTRRFIFVPFDRCFAG 429 Query: 639 R-DASFAQKL--ETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQA 695 D S +L + + + L+ + + + E + +++ R D+ Sbjct: 430 EFDPSIKSELMVDREVQEYVLRRALE-----LPEFVSFTEGEATMALRQQARVQNDSVLE 484 Query: 696 -WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK 745 W+++ + NL +S + + + +S + L+ Sbjct: 485 WWLEERGEFQTNL-IPWDFAFDVFSRWVARTNPGMKSAMSRKKFVQRLRAA 534 >gi|455528|emb|CAA54618.1| unnamed protein product [Streptococcus phage SFi18] Length = 277 Score = 148 bits (373), Expect = 4e-33, Method: Composition-based stats. Identities = 47/289 (16%), Positives = 98/289 (33%), Gaps = 19/289 (6%) Query: 405 TAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGE 464 ++ E +++ RF+ ++GI D + + + + T VE Sbjct: 1 MSREYEYNNMYMDFEPEYRDVRRFILVKNGIYDKRKKKLLSFDYKFINFSTIETELVENA 60 Query: 465 PSQEF-----LDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLM 518 P + E+++ + + +L G + ++ I + G G GK T Sbjct: 61 PKPTINGWDVDSWLLDLMSGDSELVELLWQVIAASLNGNHSYRKSIWLVGNGNDGKGTFQ 120 Query: 519 NLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA-AK 577 LI G + V + + + L + G ++I + ++ + Sbjct: 121 QLISNLVGLKNVAPLKLNQFSE---------RFGLAIIEGKTVIIGDDVQAGIYVDESSN 171 Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637 + G+ ++ N Y T N +N + +RR ++IPF K Sbjct: 172 FNSVVTGEPVSIEKKGENPYLA-QFKKTVIQSTNAMPVFKNKSNGTYRRIVIIPFKKTFG 230 Query: 638 NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEE 686 D ++A K + E ++ L KA P+ + +E Sbjct: 231 INDDNWAIKDDYINRKEVLEYVL--WKAINLDFDKFSEPKATQERMQEF 277 >gi|187935270|ref|YP_001884288.1| hypothetical protein CLL_A0034 [Clostridium botulinum B str. Eklund 17B] gi|187723423|gb|ACD24644.1| hypothetical protein CLL_A0034 [Clostridium botulinum B str. Eklund 17B] Length = 586 Score = 148 bits (372), Expect = 5e-33, Method: Composition-based stats. Identities = 86/536 (16%), Positives = 185/536 (34%), Gaps = 36/536 (6%) Query: 261 DEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRF---SDAYNKAMFS 317 + + + F+ + K S T + R +D Sbjct: 56 NYSDSEKMIENFNVAKELFEINKYSEITQYSLDSKSEMFFKKFRDRIIENTDKIESIPLI 115 Query: 318 IYKKGHFLYTADTKAWYK-----KDKNNVYIWSLTLDKITA---SIMNFLVSMKEDVFDL 369 Y+ + + +K +++ W+ + + + +K+ F+L Sbjct: 116 SYEDNKKAFMSYIGGNFKALINSFNESKFVKWNGKAWIMLTEEEGKIEYNNFIKQCNFEL 175 Query: 370 SEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFL 429 + + K+ ++ + + + ++ L + + I + + L Sbjct: 176 EKNINNLEKDD-----FYKLSKKINSWDNKNRVSEALDKLRRDNAYIINLKYHNKNENIL 230 Query: 430 GEQDG-ILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF----LDLVSGYFESEEVMD 484 ++G I+DL G+ K + I ++ ++ + S +F L L + E ++ Sbjct: 231 CSKNGLIIDLNKGEIKKSCRNDLILNTSKYNLMDKKDSIKFVKDKLKLYKKVLGN-ERLE 289 Query: 485 YFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544 + + +LG N Q I + G G +GKST N++K F V +++ Sbjct: 290 FILDLISYKMLGKN-LQLAIFMIGAGATGKSTFKNIVKDLFEENAVNIPYTYFTTKHKGN 348 Query: 545 EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604 + + L+ L + SE + D IN AK K + AR G Sbjct: 349 DDVSRDDLLVSLDNKSFGLSSEGDTTDIINQAKFKNILSNSSEKARATRGKLIDVDLQKL 408 Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKG 662 I N N DDA RR + I F I +R+ +F ++ + +F+ Sbjct: 409 DLLIDTNDIPQFTNYDDAVNRRLLFIKFINKIPIESRNTNFYKEEIKENFDYLFSYFIYR 468 Query: 663 VKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYR 722 I+K L +P + + + D+ + ++ E+ + + K+Y + Sbjct: 469 AMNLINKTL--IVPNIIKDDTMQNIKELDSLLKFSNEVIAPIEDFFVSCEEVEKAYIKMC 526 Query: 723 EQELNYDRKR----ISTRTVTLNLKQKGFIGGIK-----REKIEKEWKSKRIIKGL 769 E+E + + + + L + G + R+ + + +I GL Sbjct: 527 EEENLVNIIPGDLIGTAKGYSYLLNKLREKPGYENIERIRKSDGSKNRKCYVINGL 582 >gi|251793975|ref|YP_003008707.1| D5 N like family [Aggregatibacter aphrophilus NJ8700] gi|247535374|gb|ACS98620.1| D5 N like family [Aggregatibacter aphrophilus NJ8700] Length = 607 Score = 147 bits (371), Expect = 6e-33, Method: Composition-based stats. Identities = 78/449 (17%), Positives = 153/449 (34%), Gaps = 62/449 (13%) Query: 358 FLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNV---EENSKAKSTAQSLEA-GS 413 FL + + S + N + T +R+ + +E K T +SL+A Sbjct: 171 FLQWTDKPIRQDSTIGKTLEYNGLYWQALPETILQRKIMAFYDEQGYNKYTVRSLKAIAD 230 Query: 414 IFSITSDLLD-SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFV-EGEPSQEFLD 471 + +I +D + + F+G Q+G+L +TG+ + + ++ + + F D Sbjct: 231 LVAIKADEIPTQNPDFIGFQNGVLSKKTGEFMPHKIDHFLRSIEKFDCDTRSQNTPHFDD 290 Query: 472 LVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530 + ++ + + M L ++ F+ G G+GKS + G Sbjct: 291 WIEFVSNGNQNRKNAILAGLYMVLTNRHEWGLFLEATGTAGAGKSVFSRIASIINGESNT 350 Query: 531 INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR 590 ++ +R L+G + I S + + +A ++K +TGGD +T + Sbjct: 351 GYINLQELEIDRKR---------AMLIGKSLAI-SPDQKPYKGSADELKAITGGDNVTVK 400 Query: 591 LNYGNTY-SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKL 647 L Y + + + F +V N L + + RR I+IPFD+ I +D F +K Sbjct: 401 LVYVDDFAVKLTPVF--MLVTNYPLLFTDRNGGIARRRIIIPFDRAIPKEKKDVHFTEK- 457 Query: 648 ETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEER---------QGTDTYQAWI- 697 K L P+ EE R + ++ ++ Sbjct: 458 VQKEVYGIVNKLLA----------LFPEPDTARTILEEYRDLDEGKHIKRESNHLIDFLG 507 Query: 698 ---------DDCCDIG--ENLWEESHS-------LAKSYSEYREQELNYDRKRIS-TRTV 738 + IG + L +Y Y E R S + Sbjct: 508 HFELREHRNEKALRIGNARGGFIPYGDRLGKPDSLYSAYLFYCECNGLSPINRFSFNNAL 567 Query: 739 TLNLKQKGFIGGIKREKIEKEWKSKRIIK 767 + K+ G + + + + K Sbjct: 568 SDAFKEAGEKIPFEIKMLYGNETTNAYWK 596 >gi|324117000|gb|EGC10912.1| phage/plasmid primase [Escherichia coli E1167] Length = 590 Score = 147 bits (370), Expect = 8e-33, Method: Composition-based stats. Identities = 64/412 (15%), Positives = 130/412 (31%), Gaps = 58/412 (14%) Query: 383 PRFWFNTDYRRQNVEENSKAKSTAQSLEA-GSIFSITSDLLDSSSRFLGEQDGILDLETG 441 + + N ++ + +++A + + D+ + ++G+ D+ +G Sbjct: 184 MELSRKMVSIYEKNKTNFSKRAISNAVDALKISVPVMREQSDT---IIPFENGVYDITSG 240 Query: 442 QKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE-SEEVMDYFTRCVGMA 493 + + + E +IT G + P + F +S M + M Sbjct: 241 RFLPHSPEHWITSHNGIYYTPPAPGENIHDHAPHFHRWLSHAAGYDSSKMKRICAALFMV 300 Query: 494 LLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL 553 L Q FI G GGSGKS + + G Q ++ + E Sbjct: 301 LANRYDWQLFIEATGEGGSGKSMFTQIARMLAGEQNTAGSDMKALDDAGGRE-------- 352 Query: 554 IRLMGSRIVIISETNENDEINAAK-IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612 +L+G ++I+ ++ IK +TGGD + Y Y+ S NK Sbjct: 353 -QLVGKSLIIL--PDQPKYFGEGNGIKAITGGDPLQINPKYEKRYTTVLRSVVLI-TNNK 408 Query: 613 HLFVRNPDDAWWRRYIVIPFDKPIANRDASF-AQKLETKYTLEAKKWFLKGVKAYISKGL 671 + RR ++ F+ PIA + K + L + Sbjct: 409 PMVFTERAGGISRRRVIFQFNNPIAEENKDTCLPKKIAAEIPVIVRRLL----------V 458 Query: 672 DVDIPEVCL---------KAKEEERQGTDTYQAWIDDCCDIGENL-----------WEES 711 + PE + E ++ TD A+ + ++GE + Sbjct: 459 NFSDPEKARTLLLEQRDGEEAMEVKRHTDPLYAFCNHIVELGEAVGMFMGNLNIYPRAPR 518 Query: 712 HSLAKSYSEYREQELNYDRKRIST--RTVTLNLKQKGFIGGIKREKIEKEWK 761 L +Y Y + ++ + +K+ G + + + Sbjct: 519 IYLYHAYLAYMDAYGFDKPLNLTNFGKDFPKVMKEYGAEYKKAKTNVGMRYN 570 >gi|304558208|gb|ADM40872.1| DNA primase [Edwardsiella tarda FL6-60] Length = 777 Score = 147 bits (370), Expect = 9e-33, Method: Composition-based stats. Identities = 66/408 (16%), Positives = 122/408 (29%), Gaps = 69/408 (16%) Query: 391 YRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKEL 450 R + + K S ++L+ T R +G ++G+LD ++G K Sbjct: 381 QRLRAPFSSGKIASVVETLKLIIPQQDTPA-----RRLIGFRNGVLDTQSGVFSPHHKSH 435 Query: 451 YITKSTGTPFVEGEP-------SQEFLDLVSGYFES-EEVMDYFTRCVGMALLGGNKAQR 502 ++ F + F + + D + M L Q Sbjct: 436 WLCTLCDVDFTPPVEGETLETHAPNFWRWLDRAAGKSPQKRDVILAALFMVLANRYDWQL 495 Query: 503 FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIV 562 F+ + G GGSGKS L + G +A+ + R L+G ++ Sbjct: 496 FLEVTGPGGSGKSILAEIATLLAGEDNATSADIDTLEDPRKR---------ASLIGFSLI 546 Query: 563 IISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDA 622 + + + A +K +TGGD ++ Y N YS V N + + Sbjct: 547 RLPDQEKWSGDGAG-LKAITGGDAVSVDPKYQNPYSTHIP-AVILAVNNNPMRFTDRSGG 604 Query: 623 WWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCL 680 RR ++I F + I RD K+ + ++ P Sbjct: 605 VSRRRVIIHFPEQIAPEERDPQLRDKIAR-ELAVIVRQLMQ----------KFSDPMTAR 653 Query: 681 KAKEEE---------RQGTDTY--------------QAWIDDCCDIGENLWEESHSLAKS 717 + + ++ D ++ + I N L + Sbjct: 654 ALLQSQQNSDEALSIKRDADPTFDFCGYLEMLPQTSGMFMGNASIIPRNYR---KYLYHA 710 Query: 718 YSEYREQELNYDRKRISTRTVT----LNLKQKGFIGGIKREKIEKEWK 761 Y Y E R +S + + LK+ G + K + Sbjct: 711 YLAYMEANGY--RNVLSLKMFGLGLPMMLKEYGLNYEKRHTKQGIQTN 756 >gi|238763412|ref|ZP_04624375.1| P4-specific DNA primase [Yersinia kristensenii ATCC 33638] gi|238763493|ref|ZP_04624455.1| P4-specific DNA primase [Yersinia kristensenii ATCC 33638] gi|238698275|gb|EEP91030.1| P4-specific DNA primase [Yersinia kristensenii ATCC 33638] gi|238698356|gb|EEP91110.1| P4-specific DNA primase [Yersinia kristensenii ATCC 33638] Length = 776 Score = 146 bits (369), Expect = 9e-33, Method: Composition-based stats. Identities = 74/531 (13%), Positives = 151/531 (28%), Gaps = 103/531 (19%) Query: 265 FNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYN---KAMFSIYKK 321 N W+ + + + L + F A+ + + Sbjct: 288 INGDWNDIYQVR--GAVETANLLHAFCQRGETSPFDSLSEADFKAMSASEKAALIAEHYN 345 Query: 322 GHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSK 381 A + +Y+ + I + F + +E Sbjct: 346 DRLAIDAFGETFYQYENGAWKI------------LTFRILSREVAALF------------ 381 Query: 382 SPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETG 441 + + + +L I + + + +G ++G+ + TG Sbjct: 382 ---------QKIRAPFSAAGISGVLDTL--KLIIPVHKEP---ARHLIGFRNGVFNTVTG 427 Query: 442 QKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYF-ESEEVMDYFTRCVGMA 493 Q KE ++ + + + F + EE + M Sbjct: 428 QFSPHRKEYWLRTVNNVDYTTYKEGENLPEHAPYFWQWLDRAASGREEKRQRILAALFMV 487 Query: 494 LLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL 553 L Q F+ + G GGSGKS + + G A + I +R Sbjct: 488 LANRYDWQLFLEVTGPGGSGKSVMAEIATLLAGKDNTTAATINTIESSR---------ER 538 Query: 554 IRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKH 613 ++G ++I+ + + + A IK +TGGD + Y + YS S V N Sbjct: 539 SAIVGYSLIILPDQEKWSG-DEAGIKAITGGDAVMVDPKYKDAYSTSIP-AVILAVNNNP 596 Query: 614 LFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGL 671 + + RR +++ F + I RD K+E ++ ++ Sbjct: 597 MRFSDRSGGVSRRRVILSFPEVIPVNERDPQMKSKIE-SELSVIVRYLMQ---------- 645 Query: 672 DVDIPEVCLKAKEEERQG---------TDTYQAWIDDCCDIGENLWE------------- 709 P K +E++ +D + C + + Sbjct: 646 RFANPGDARKLLQEQQNSDEALEIKRNSDPLVDF---CGYLLASAEANGLYMGNGNIIPR 702 Query: 710 -ESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKE 759 L +Y + E + K ++ L L Q G+ K + + Sbjct: 703 NPRKYLYHAYLSFMEARGHL--KPMTLTAFGLALPQILREYGLALLKRKTK 751 >gi|300718526|ref|YP_003743329.1| Plasmid and phage DNA primase [Erwinia billingiae Eb661] gi|299064362|emb|CAX61482.1| Plasmid and phage DNA primase [Erwinia billingiae Eb661] Length = 776 Score = 146 bits (369), Expect = 1e-32, Method: Composition-based stats. Identities = 58/371 (15%), Positives = 116/371 (31%), Gaps = 62/371 (16%) Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478 R +G ++G+LD T K+ ++ + F + F + Sbjct: 410 RRLIGFRNGVLDTRTATFSPHRKDYWLRTVSDVDFTPPVTGETLESHAPHFWQWLDRAAG 469 Query: 479 S-EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537 E D + M L Q F+ + G GGSGKS + + G +A Sbjct: 470 RCAEKRDIILAALFMVLANRFDWQLFLEVTGPGGSGKSIMAEIATMLAGTDNTTSATIET 529 Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597 + +R ++G ++I+ + + A IK +TGGD ++ Y + Y Sbjct: 530 LESSR---------ERAAVIGYSLIILPDQEKWSGDGAG-IKAITGGDAVSVDPKYRDAY 579 Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEA 655 S V N + + RR +++ F + + + RD +K+ Sbjct: 580 STHIP-AVILAVNNNPMRFTDRSGGVSRRRVILHFPEIVAASERDPQLKEKI-RGEMAVI 637 Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDC----CD 702 + ++ P+ + + ++ D + C Sbjct: 638 VRQLMQ----------RFSQPQDARALLQSQQNSGEAMRIKRDADPMVDF---CGYLFTA 684 Query: 703 IGENLW----------EESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIK 752 N + L +Y Y E + +S + L L+ G + Sbjct: 685 PEPNALYMGNASIRPAQPRRYLYHAYLCYMEANGY--KNPLSMKMFGLALE--GILREYG 740 Query: 753 REKIEKEWKSK 763 +++ K Sbjct: 741 LSYLKRRTKQG 751 >gi|172035639|ref|YP_001802140.1| hypothetical protein cce_0723 [Cyanothece sp. ATCC 51142] gi|171697093|gb|ACB50074.1| hypothetical protein cce_0723 [Cyanothece sp. ATCC 51142] Length = 732 Score = 146 bits (369), Expect = 1e-32, Method: Composition-based stats. Identities = 56/406 (13%), Positives = 127/406 (31%), Gaps = 48/406 (11%) Query: 16 NGFKLIPLRLGDKRPQRLGKWEEQ------LLSSEKIDK----LPACGFGFVCGVGEQPL 65 N ++ IP+ +K P ++ L+ ++I + G G + Sbjct: 27 NNWRFIPVD-KNKAPMTTKTFQATGWTKKEALTKQEIIRELCDYDVNAVGLALGKHSVNV 85 Query: 66 YAFDIDSKDEKTANTFKDTF------EILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTT 119 A D D ++ + + E L T G+ + + ++++ + + Sbjct: 86 VAIDHDG---ESCDKLIEELTGLSLKEALPSTVAFSSGRTGRYQKLYSVSEDILNQLTNK 142 Query: 120 ESTQGHLDILGCG--------QYFVAYNIHPKTKKE-YTWTTPPHRFKVEDTPLLSEEDV 170 + G D G Y + HPKT+ Y W +++ TPL Sbjct: 143 QIKTGEKDEDGKSEQLEFRVNGYSIIMGFHPKTQSYSYHWLDGCSPQEIDITPLPEWWLN 202 Query: 171 EYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWI 230 +L K N + L + F ++D+W Sbjct: 203 IWLNSEKTNKKEKKKSLSKINDI-------PNDLSSIISKCQNLLSQLKPFRCDNYDDWN 255 Query: 231 PVVMAVHHETRG----SSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRST 286 V MA+HHE S ++ WS+ + + + KW +FD + T Sbjct: 256 RVGMALHHEAGDDPILSELLLDLWTNWSQNSNKFKDGECATKWQSFDSNK-----DNTVT 310 Query: 287 FTSLFYHHGKL--IPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIW 344 +L + +P+ + D + + + +Y + + + + Sbjct: 311 LGTLVEWAKEDSNLPQQNSKNTLDDE-RQEFYQMLDDIDKIYEEEDYGFQQVLSRKIAKK 369 Query: 345 SLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTD 390 I+ + ++ + + + ++ K++ + + Sbjct: 370 YGYNSNISQMLKDYWNANPNLLKSDFIDIKNYVKDTPRIDYLISNL 415 >gi|161615642|ref|YP_001589607.1| hypothetical protein SPAB_03426 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|161365006|gb|ABX68774.1| hypothetical protein SPAB_03426 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] Length = 777 Score = 146 bits (369), Expect = 1e-32, Method: Composition-based stats. Identities = 68/408 (16%), Positives = 122/408 (29%), Gaps = 69/408 (16%) Query: 391 YRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKEL 450 R + + K S ++L+ T R +G ++G+LD TG K Sbjct: 381 QRLRAPFSSGKIASVVETLKLIIPQQDTPA-----RRLIGFRNGVLDTATGTFSPHHKSH 435 Query: 451 YITKSTGTPFVEGEP-------SQEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQR 502 ++ F + F + E D + M L Q Sbjct: 436 WLRTLCDVDFTPPVEGETLETHAPNFWRWLDRAAGGRPEKRDVILAALFMVLANRYDWQL 495 Query: 503 FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIV 562 F+ + G GGSGKS L + G +A+ + R L+G ++ Sbjct: 496 FLEVTGPGGSGKSILAEIATLLAGEDNATSADIDTLEDPRKR---------ASLIGFSLI 546 Query: 563 IISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDA 622 + + + A +K +TGGD ++ Y N YS V N + + Sbjct: 547 RLPDQEKWSGDGAG-LKAITGGDAVSVDPKYQNPYSTHIP-AVILAVNNNPMRFTDRSGG 604 Query: 623 WWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCL 680 RR ++I F + IA RD K+ + ++ P Sbjct: 605 VSRRRVIIHFPEQIAPDERDPQLKDKIAR-ELAVIVRQLMQ----------KFSDPMAAR 653 Query: 681 KAKEEE---------RQGTDTY--------------QAWIDDCCDIGENLWEESHSLAKS 717 + + ++ D ++ + + N L + Sbjct: 654 TLLQSQQNSDEALSIKRDADPTFDFCGYLEMLPQTNGMFMGNASIVPRNYR---KYLYHA 710 Query: 718 YSEYREQELNYDRKRISTRTVT----LNLKQKGFIGGIKREKIEKEWK 761 Y Y E R +S + + LK+ G + K + Sbjct: 711 YLAYMEANGY--RNVLSLKMFGLGLPMMLKEYGLNYEKRHTKQGIQTN 756 >gi|300719024|ref|YP_003743827.1| phage/plasmid primase, P4 family [Erwinia billingiae Eb661] gi|299064860|emb|CAX61980.1| Phage/plasmid primase, P4 family [Erwinia billingiae Eb661] Length = 776 Score = 146 bits (369), Expect = 1e-32, Method: Composition-based stats. Identities = 61/373 (16%), Positives = 121/373 (32%), Gaps = 64/373 (17%) Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478 R +G ++G+LD T K+ ++ + F P + F + Sbjct: 410 RRLIGFRNGVLDTRTATFSPHRKDYWLRTVSDVDFTPPVPGETLESHAPHFWQWLDRAAG 469 Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537 S E D + M L Q F+ + G GGSGKS + ++ G +A Sbjct: 470 RSAEKRDIILAALFMVLANRFDWQLFLEVTGPGGSGKSIMADIATMLAGTDNTTSATIET 529 Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597 + +R ++G ++I+ + + A IK +TGGD ++ Y + Y Sbjct: 530 LESSR---------ERAAVIGYSLIILPDQEKWSGDGAG-IKAITGGDAVSVDPKYRDAY 579 Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEA 655 S V N + + RR +++ F + + + RD +K+ Sbjct: 580 STHIP-AVILAVNNNPMRFTDRSGGVSRRRVILHFPEIVSASERDPQLKEKI-RGELSVI 637 Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDC----CD 702 + ++ P+ + + ++ D + C Sbjct: 638 VRQLMQ----------RFSQPQDARTLLQSQQNSDEAMRIKRDADPMVDF---CGYLFTT 684 Query: 703 IGENL----------WEESHSLAKSYSEYREQELNYDRKRISTRTVTLN----LKQKGFI 748 N + L +Y Y E + +S + L+ L++ G Sbjct: 685 PEPNALYMGNASIRPSQPKRYLYHAYLAYMEANGY--KNPLSMKMFGLSLDGILREYGLN 742 Query: 749 GGIKREKIEKEWK 761 +R K+ + Sbjct: 743 YLKRRTKLGIQTN 755 >gi|323978458|gb|EGB73541.1| poxvirus D5 protein [Escherichia coli TW10509] Length = 777 Score = 146 bits (369), Expect = 1e-32, Method: Composition-based stats. Identities = 66/408 (16%), Positives = 123/408 (30%), Gaps = 69/408 (16%) Query: 391 YRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKEL 450 R + + K S ++L+ T R +G ++G+LD ++G +K Sbjct: 381 QRLRAPFSSGKIASVVETLKLIIPQQDTPA-----RRLIGFRNGVLDTQSGLFSPHSKSH 435 Query: 451 YITKSTGTPFVEGEP-------SQEFLDLVSGYFES-EEVMDYFTRCVGMALLGGNKAQR 502 ++ F + F + + D + M L Q Sbjct: 436 WLRTLCDVDFTPPVEGETLETHAPNFWRWLDRAAGKSPQKRDVILAALFMVLANRYDWQL 495 Query: 503 FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIV 562 F+ + G GGSGKS L + G +A+ + R L+G ++ Sbjct: 496 FLEVTGPGGSGKSILAEIATLLAGEDNATSADIDTLEDPRKR---------ASLIGFSLI 546 Query: 563 IISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDA 622 + + + A +K +TGGD ++ Y N YS V N + + Sbjct: 547 RLPDQEKWSGDGAG-LKAITGGDAVSVDPKYQNPYSTHIP-AVILAVNNNPMRFTDRSGG 604 Query: 623 WWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCL 680 RR ++I F + I RD K+ + ++ P Sbjct: 605 VSRRRVIIHFPEQIAPEERDPQLRDKIAR-ELAVIVRQLMQ----------KFSDPMTAR 653 Query: 681 KAKEEE---------RQGTDTY--------------QAWIDDCCDIGENLWEESHSLAKS 717 + + ++ D ++ + I N L + Sbjct: 654 ALLQSQQNSDEALNIKRDADPTFDFCGYLEMLPQTNGMFMGNASIIPRNYR---KYLYHA 710 Query: 718 YSEYREQELNYDRKRISTRTVT----LNLKQKGFIGGIKREKIEKEWK 761 Y Y E R +S + + LK+ G + K + Sbjct: 711 YLAYMEANGY--RNVLSLKMFGLGLPMMLKEYGLNYEKRHTKQGIQTN 756 >gi|260577360|ref|ZP_05845331.1| ATPase-like protein [Rhodobacter sp. SW2] gi|259020433|gb|EEW23758.1| ATPase-like protein [Rhodobacter sp. SW2] Length = 814 Score = 146 bits (369), Expect = 1e-32, Method: Composition-based stats. Identities = 78/526 (14%), Positives = 151/526 (28%), Gaps = 68/526 (12%) Query: 267 YKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLY 326 ++ E D + R L K + H Sbjct: 329 EDFNDILVREGEDAVRSRIAGAEPLRADQADTRSKDLYIGSDVEIAKRVREDLTARHGRI 388 Query: 327 TADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFW 386 A+++ +I + L+ + +D ++ + S+ Sbjct: 389 VHAEGAFWRYTGTEW-----------EAIEDHLIRLPVHAYDGADFMTAAGEPSR----- 432 Query: 387 FNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLE---TGQK 443 ++ ++ + A E ++ + G + + T Sbjct: 433 ---VKLSRSRVDSVLNECAALCAEPHF--------FENPPAGINCTSGFIRFDAAGTPHL 481 Query: 444 VKPTKELYITKSTGTPFVEG-----EPSQEFLDLVSGYF-ESEE---VMDYFTRCVGMAL 494 + + + G L++G F E D G A Sbjct: 482 EPHHRNHRCRHTLPGHWHAGVPGTPPEGSLLHRLLTGSFKGDPEAQAKCDLLAEICGSAA 541 Query: 495 LGGNK---AQRFIHIRG-VGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKAN 550 LG R + + G +GKS +NL + + + AS + +R Sbjct: 542 LGYATHLLQPRAVVLHGMAAENGKSQFLNLARGLLPPSAICSVPASQMGDDRH------- 594 Query: 551 PSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVP 610 ++ L+G + E + + I + K + GD + R Y + E + Sbjct: 595 --VLGLVGKLLNASDELSA-EAIASDAFKAVVTGDPVQGRDVYK-SRVEFRSVAQNLFAT 650 Query: 611 NKHLFVRN-PDDAWWRRYIVIPFDK--PIANRDASFAQKLETKYTLEAKKWFLKGVKAYI 667 N + D RR +VIPF + PI R A +++ + W + G I Sbjct: 651 NTLPSFKGGVDRGVQRRLMVIPFTRTIPIPERVADIGKRIASDEADLLLAWAVHGAARLI 710 Query: 668 SKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE----NLWEESHSLAKSYSEYRE 723 + + IPE C +A + G D AWID C + + + + Sbjct: 711 RQ-RNFAIPESCHRALLDWVLGEDPVLAWIDACVRVQPIVNGGPMLATRDAHLRFQNWAL 769 Query: 724 QELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGL 769 E K + ++ + KR + R G+ Sbjct: 770 AEGFKTEKIPAINGFVQRVQAQVAGIQHKR------TSTGRFFLGI 809 >gi|204927104|ref|ZP_03218306.1| nucleoside triphosphatase, D5 family [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|204323769|gb|EDZ08964.1| nucleoside triphosphatase, D5 family [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] Length = 777 Score = 146 bits (369), Expect = 1e-32, Method: Composition-based stats. Identities = 66/408 (16%), Positives = 123/408 (30%), Gaps = 69/408 (16%) Query: 391 YRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKEL 450 R + + K S ++L+ T R +G ++G+LD ++G +K Sbjct: 381 QRLRAPFSSGKIASVVETLKLIIPQQDTPA-----RRLIGFRNGVLDTQSGLFSPHSKSH 435 Query: 451 YITKSTGTPFVEGEP-------SQEFLDLVSGYFES-EEVMDYFTRCVGMALLGGNKAQR 502 ++ F + F + + D + M L Q Sbjct: 436 WLRTLCDVDFTPPVEGEMLETHAPNFWRWLDRAAGKSPQKRDVILAALFMVLANRYDWQL 495 Query: 503 FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIV 562 F+ + G GGSGKS L + G +A+ + R L+G ++ Sbjct: 496 FLEVTGPGGSGKSILAEIATLLAGEDNATSADIDTLEDPRKR---------ASLIGFSLI 546 Query: 563 IISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDA 622 + + + A +K +TGGD ++ Y N YS V N + + Sbjct: 547 RLPDQEKWSGDGAG-LKAITGGDAVSVDPKYQNPYSTHIP-AVILAVNNNPMRFTDRSGG 604 Query: 623 WWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCL 680 RR ++I F + I RD K+ + ++ P Sbjct: 605 VSRRRVIIHFPEQIAPEERDPQLRDKIAR-ELAVIVRQLMQ----------KFSDPMTAR 653 Query: 681 KAKEEE---------RQGTDTY--------------QAWIDDCCDIGENLWEESHSLAKS 717 + + ++ D ++ + I N L + Sbjct: 654 ALLQSQQNSDEALSIKRDADPTFDFCGYLEMLPQTNGMFMGNASIIPRNYR---KYLYHA 710 Query: 718 YSEYREQELNYDRKRISTRTVT----LNLKQKGFIGGIKREKIEKEWK 761 Y Y E R +S + + LK+ G + K + Sbjct: 711 YLAYMEANGY--RNVLSLKMFGLGLPMMLKEYGLNYEKRHTKQGIQTN 756 >gi|21910493|ref|NP_664761.1| putative DNA primase - phage associated [Streptococcus pyogenes MGAS315] gi|28876241|ref|NP_795450.1| putative DNA primase [Streptococcus pyogenes phage 315.2] gi|21904692|gb|AAM79564.1| putative DNA primase - phage-associated [Streptococcus pyogenes MGAS315] Length = 290 Score = 146 bits (368), Expect = 1e-32, Method: Composition-based stats. Identities = 46/266 (17%), Positives = 95/266 (35%), Gaps = 16/266 (6%) Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549 + +L G ++ I G G GK T +I G + V + + + Sbjct: 1 MAASLNGNYSYRKSIWFVGDGNDGKGTFQQMISNLVGFKNVAPLKLNQFSE--------- 51 Query: 550 NPSLIRLMGSRIVIISETNENDEINA-AKIKQMTGGDCMTARLNYGNTYSESPASFTPFI 608 L + G ++I + ++ + + G+ ++ N Y T Sbjct: 52 RFGLAIIEGKTVIIGDDVQAGIYVDESSNFNSVVTGEPVSIEKKGENPYMAI-FKKTVIQ 110 Query: 609 VPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYIS 668 N +N + +RR I+IPF K ++ + ++A K + E ++ L KA Sbjct: 111 STNGMPSFKNKSNGTYRRIIIIPFQKTFSSTEDNWAIKDDYINRKEVLEYVL--WKAINL 168 Query: 669 KGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNY 728 P+ + ++ ++T A+IDD + + + L Y E+ + + Sbjct: 169 DFDRFSEPKATQERMHAFKRDSNTILAFIDDWFERFTSTVLPTRFLWWLYKEWCKDNGHT 228 Query: 729 DRKRISTRTVTLNLKQKGFIGGIKRE 754 + T L G +K++ Sbjct: 229 ---PLKQSTFENELSTNIPDGWVKKK 251 >gi|253990202|ref|YP_003041558.1| hypothetical protein PAU_02725 [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253781652|emb|CAQ84815.1| conserved hypothetical protein [Photorhabdus asymbiotica] Length = 778 Score = 146 bits (368), Expect = 1e-32, Method: Composition-based stats. Identities = 59/443 (13%), Positives = 132/443 (29%), Gaps = 52/443 (11%) Query: 363 KEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLL 422 E V+ + + +++ R + + + +++ Sbjct: 351 SEMVYHYNGTTWETVSDNELRRAMVAIFDQHDTPYSPNGINNAICAMKLQVPIIGEQRQ- 409 Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGE-------PSQEFLDLVSG 475 +G +G+ +L T + + E ++ G F + + +F +S Sbjct: 410 ----DLIGFSNGVYELSTQKFIPHQPEHWLMNHNGIKFTQPAIGENLPDHAPDFYRWLSH 465 Query: 476 YFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534 +E M+ + M L Q FI + G GGSGKS + G + Sbjct: 466 AAGQNENKMNRIKAALFMILANRYDWQLFIEVTGEGGSGKSIFTYIATLLAGEHNTASGN 525 Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK-IKQMTGGDCMTARLNY 593 + + R + +G + I+ ++ + IK +TG D + Y Sbjct: 526 MRALDEARGR---------YQFVGKSL--ITLPDQVKYVGEGAGIKAITGSDLIEIDGKY 574 Query: 594 GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKY 651 +S N+ + + RR ++ PF+ P+ +D +K+ Sbjct: 575 EKQFSTII-KAVVLATNNEPMSFTERNGGIARRRVIFPFNIPVKESEKDPQLPEKISR-E 632 Query: 652 TLEAKKWFL-KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAW------IDDCC--- 701 + L + +K L + + +D + ++D Sbjct: 633 LPVIIRHLLNEFADQNKAKKLLQTQRDSNEALT--VKSNSDPLYRFCGYLVSVNDTTGMK 690 Query: 702 --DIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKE 759 + + L +Y + E + ++ +L + KE Sbjct: 691 MGNKNISPRAPRMYLYHAYLSFMEAHGF--ERPLTLTKFGESLPKIMLE-------YRKE 741 Query: 760 WKSKRIIKGLKLKPAFESVDDNS 782 ++ R KG + Sbjct: 742 YRKVRTKKGYSYNVELSEEAEEW 764 >gi|300723481|ref|YP_003712786.1| putative phage primase [Xenorhabdus nematophila ATCC 19061] gi|297630003|emb|CBJ90638.1| putative phage primase [Xenorhabdus nematophila ATCC 19061] Length = 808 Score = 146 bits (368), Expect = 1e-32, Method: Composition-based stats. Identities = 76/599 (12%), Positives = 165/599 (27%), Gaps = 60/599 (10%) Query: 214 LSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFD 273 L G + V V + S W K Sbjct: 226 LHNDGAVLAAIDESNLLTVAELVRKQWPESKIILAADNDWHKPEERDKNGKLKKNVGKIA 285 Query: 274 FEEIGDTAKKRSTFT-SLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKA 332 E+ T + + + A++ ++ + +K A Sbjct: 286 AEKTAKAINGWVTLPPTEYKADWDDYRQRHGTEAAKQAFSNGLYQVREKAPVNSEATENY 345 Query: 333 WYKKDKNNVYIWSLTLDKITASIMNFLVSMK-----EDVFDLSEEPEDNNKNSKSPRFWF 387 K K N + + + A ++ + E V+ + + +++ R Sbjct: 346 ETKPKKANNNLAQMAASQRGALLVEHYKKIAVHAESETVYHYNSATWETVSDNELRRAMV 405 Query: 388 NTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPT 447 + + + +++ +G +G+ L T Q Sbjct: 406 AFFDQHDTPYSPNGINNAICAMKLQIPVIGEQRQ-----DLIGFSNGVYALSTQQFTPHQ 460 Query: 448 KELYITKSTGTPFVEGE-------PSQEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNK 499 E ++ G F + +F +S +E MD + M L Sbjct: 461 PEHWLMNHNGIVFTLPAVGENLPDHAPDFYRWLSHAAGQNENKMDRIKAALFMILANRYD 520 Query: 500 AQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGS 559 Q FI + G GGSGKS + G + + + R + +G Sbjct: 521 WQLFIEVTGEGGSGKSVFTYIATLLAGEHNTASGNMRALDEARGR---------YQFVGK 571 Query: 560 RIVIISETNENDEINAAK-IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRN 618 + I+ ++ + IK +TGGD + Y +S N+ + Sbjct: 572 SL--ITLPDQVKYVGEGAGIKAITGGDLIEVDGKYEKQFSTVI-KAVVLATNNEPMSFTE 628 Query: 619 PDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIP 676 + RR ++ PF+ P+ +D +K+ + L + + + Sbjct: 629 RNGGIARRRVIFPFNIPVKESEKDPQLPEKISR-ELPVIIRHLLN---EFADQNKAKKLL 684 Query: 677 EVCLKAKEEE--RQGTDTYQAW------IDDCC-----DIGENLWEESHSLAKSYSEYRE 723 + + E + +D + ++D + + L +Y + E Sbjct: 685 QAQRDSNEALTVKSHSDPLYRFCGYLVSVNDMTGMKMGNKNISPRAPRLYLYHAYLSFME 744 Query: 724 QELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDNS 782 + ++ ++ + KE++ R KG + Sbjct: 745 AHGF--ERPLTLTKFGESIPKIMLE-------YRKEYRKVRTKKGYSYNVELSEEAEEW 794 >gi|291335727|gb|ADD95331.1| hypothetical protein cce_0723 [uncultured phage MedDCM-OCT-S05-C22] Length = 651 Score = 146 bits (368), Expect = 2e-32, Method: Composition-based stats. Identities = 48/270 (17%), Positives = 82/270 (30%), Gaps = 37/270 (13%) Query: 54 FGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGI 113 G G+ + D+D + K L G PI+ + FR+ +E Sbjct: 64 VGVFTGIRGNGIVILDVD---RNLSKYLKAWGSSLDGAPIITSTKANAAKYLFRVPEELW 120 Query: 114 KKKKT---TESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDV 170 K + G +IL G+ V + +P K + D P + + Sbjct: 121 ADVKGHGLRKEDGGDYEILW-GRQGVVFGAYPG-GKVSKPGQYLLDGDLADIPTAPDWLL 178 Query: 171 EYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWI 230 + + + I T + Q E + +S G+ G+ D W+ Sbjct: 179 AEMKQPPRTINKK--------ELDFTDRTQDEVQQIIFECLSVISPQGK----GTRDHWV 226 Query: 231 PVVMAVHHETRGSSKGKEIARRWSKQGSTYDEEN-----FNYKWDTFDFEEIGDTAKKRS 285 + MA+H G + WS Q Y E W +F Sbjct: 227 KIGMAIHSALPTD-MGLHLWASWSCQDPDYASEWEDSNPCEEVWYSF--------KGNGV 277 Query: 286 TFTSLFYHHGKLIPKGLLASRFSDAYNKAM 315 SL + + + RFS+ K + Sbjct: 278 GLGSLIWLADR---EDPKRKRFSEDTRKIV 304 >gi|16763293|ref|NP_458910.1| bacteriophage P4 DNA primase [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|213648797|ref|ZP_03378850.1| bacteriophage P4 DNA primase [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|289824541|ref|ZP_06544100.1| bacteriophage P4 DNA primase [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25301728|pir||AE1063 Bacteriophage P4 DNA primase (EC 2.7.7.-) [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16505601|emb|CAD06954.1| Bacteriophage P4 DNA primase [Salmonella enterica subsp. enterica serovar Typhi] Length = 777 Score = 146 bits (367), Expect = 2e-32, Method: Composition-based stats. Identities = 62/373 (16%), Positives = 110/373 (29%), Gaps = 64/373 (17%) Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478 R +G ++G+LD TG K ++ F + F + Sbjct: 411 RRLIGFRNGVLDTATGTFSPHHKSHWLRTLCDVDFTSPVEGETLETHAPHFWRWLDRAAG 470 Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537 E D + M L Q F+ + G GGSGKS L + G +A Sbjct: 471 GKPEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNATSATIET 530 Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597 + R L+G ++ + + + A +K +TGGD ++ Y + Y Sbjct: 531 LESPR---------ERAALIGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYKDAY 580 Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEA 655 S V N + + RR ++I F + I RD K+ Sbjct: 581 STHIP-AVILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPEERDPQLRDKIAR-ELAII 638 Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTY------------- 693 + ++ P + + ++ D Sbjct: 639 VRQLMQ----------KFSDPMTARTLLQSQQNSDEALSIKRDADPTFDFCGYLEMLPQT 688 Query: 694 -QAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVT----LNLKQKGFI 748 ++ + I N L +Y Y E R +S + + LK+ G Sbjct: 689 NGMFMGNASIIPRNYR---KYLYHAYLAYMEANGY--RNVLSLKMFGLGLPMMLKEYGLN 743 Query: 749 GGIKREKIEKEWK 761 + K + Sbjct: 744 YEKRHTKQGIQTN 756 >gi|213582465|ref|ZP_03364291.1| bacteriophage P4 DNA primase [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 388 Score = 146 bits (367), Expect = 2e-32, Method: Composition-based stats. Identities = 62/373 (16%), Positives = 110/373 (29%), Gaps = 64/373 (17%) Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478 R +G ++G+LD TG K ++ F + F + Sbjct: 22 RRLIGFRNGVLDTATGTFSPHHKSHWLRTLCDVDFTSPVEGETLETHAPHFWRWLDRAAG 81 Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537 E D + M L Q F+ + G GGSGKS L + G +A Sbjct: 82 GKPEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNATSATIET 141 Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597 + R L+G ++ + + + A +K +TGGD ++ Y + Y Sbjct: 142 LESPR---------ERAALIGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYKDAY 191 Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEA 655 S V N + + RR ++I F + I RD K+ Sbjct: 192 STHIP-AVILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPEERDPQLRDKIAR-ELAII 249 Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTY------------- 693 + ++ P + + ++ D Sbjct: 250 VRQLMQ----------KFSDPMTARTLLQSQQNSDEALSIKRDADPTFDFCGYLEMLPQT 299 Query: 694 -QAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVT----LNLKQKGFI 748 ++ + I N L +Y Y E R +S + + LK+ G Sbjct: 300 NGMFMGNASIIPRNYR---KYLYHAYLAYMEANGY--RNVLSLKMFGLGLPMMLKEYGLN 354 Query: 749 GGIKREKIEKEWK 761 + K + Sbjct: 355 YEKRHTKQGIQTN 367 >gi|146312751|ref|YP_001177825.1| plasmid and phage DNA primase [Enterobacter sp. 638] gi|145319627|gb|ABP61774.1| plasmid and phage DNA primase [Enterobacter sp. 638] Length = 777 Score = 145 bits (366), Expect = 2e-32, Method: Composition-based stats. Identities = 61/374 (16%), Positives = 113/374 (30%), Gaps = 66/374 (17%) Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYF- 477 R +G ++G+LD TG K ++ F + F + Sbjct: 411 RRLIGFRNGVLDTLTGVFSPHNKSHWLRTLCDVDFTPPVDGETLETHAPNFWRWLDRAAS 470 Query: 478 ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537 + E D + M L Q F+ + G GGSGKS L + G +A Sbjct: 471 GNAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATLLAGEDNATSATIET 530 Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597 + R L+G ++ + + + A +K +TGGD ++ Y + Y Sbjct: 531 LESPR---------ERAALIGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYRDAY 580 Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEA 655 S + + N + + RR ++I F + I RD K+ Sbjct: 581 SAYIPAVILAV-NNNPMRFTDRSGGVSRRRVIIHFPEQIAPEERDPQLKDKIAR-ELAVI 638 Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGEN 706 + ++ P + + ++ D + C E Sbjct: 639 VRQLMQ----------QFSDPMTARSLLQSQQNSDEALSIKRDADPTFDF----CGYLEA 684 Query: 707 L---------------WEESHSLAKSYSEYREQELNYDRKRISTRTVT----LNLKQKGF 747 L + + L +Y Y E + +S + + LK+ G Sbjct: 685 LPQTNGMFMGNANIIPRQPRNYLYHAYLVYMEANGY--KHVLSLKMFGLGLPMMLKEYGL 742 Query: 748 IGGIKREKIEKEWK 761 + K + Sbjct: 743 NYDKRHTKQGTQTN 756 >gi|320665356|gb|EFX32443.1| alpha replication protein of prophage CP-933I [Escherichia coli O157:H7 str. LSU-61] Length = 777 Score = 145 bits (366), Expect = 2e-32, Method: Composition-based stats. Identities = 72/531 (13%), Positives = 149/531 (28%), Gaps = 101/531 (19%) Query: 268 KWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFS----DAYNKAMFSIYKKGH 323 W+ D R + + + F+ + + YK Sbjct: 290 DWN--DAFTQNGEEATRHAIHEVIKPAVASPFDTMSEAEFTALSVSEKAQRVVDHYK-NS 346 Query: 324 FLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSP 383 + + + + + + DV L + Sbjct: 347 LAVDPNGQLLSRYEAGAWKVI-------------YYADFARDVAALFQ------------ 381 Query: 384 RFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQK 443 R ++K S ++L+ I + + + +G ++G+LD TG Sbjct: 382 --------RLDAPFSSAKIASLVETLK-----LIVPQQQNPARQLIGFRNGVLDTRTGLF 428 Query: 444 VKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE-SEEVMDYFTRCVGMALL 495 K+ ++ + + + F + + E D + M L Sbjct: 429 SPHDKKHWLRTLCEVDYTQPVDGESLETHAPAFWRWLDRAAGFNPEKRDIILAALFMVLA 488 Query: 496 GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIR 555 Q F+ + G GGSGKS L + G +A + R Sbjct: 489 NRYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNATSATIEMLESPR---------ERAA 539 Query: 556 LMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLF 615 L+G ++ + + + A +K +TGGD ++ Y N YS V N + Sbjct: 540 LIGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYQNAYSTHIP-AVILAVNNNPMR 597 Query: 616 VRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDV 673 + RR +++ F I RD +K+ + ++ Sbjct: 598 FTDRSGGVSRRRVILHFPDQIAPEERDTQLKEKI-ASELAVIVRQLMQ----------RF 646 Query: 674 DIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGENL------------WEESH 712 P + + ++ D+ + ++ + + Sbjct: 647 SDPMSARTLLQSQQNSDEALTIKRDADSAFDFCG-YLEVLPDTTGMFMGNANIVPRQPRT 705 Query: 713 SLAKSYSEYREQEL--NYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWK 761 L +Y Y E N + + + L LK+ G +R + Sbjct: 706 YLYHAYLVYMEANGYKNTLSLTMFGKGLPLMLKEYGLQYEKRRTNQGMQTN 756 >gi|15799978|ref|NP_285990.1| alpha replication protein of prophage CP-933I [Escherichia coli O157:H7 EDL933] gi|12513053|gb|AAG54598.1|AE005204_8 alpha replication protein of prophage CP-933I [Escherichia coli O157:H7 str. EDL933] Length = 796 Score = 145 bits (366), Expect = 2e-32, Method: Composition-based stats. Identities = 72/531 (13%), Positives = 149/531 (28%), Gaps = 101/531 (19%) Query: 268 KWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFS----DAYNKAMFSIYKKGH 323 W+ D R + + + F+ + + YK Sbjct: 309 DWN--DAFTQNGEEATRHAIHEVIKPAVASPFDTMSEAEFTALSVSEKAQRVVDHYK-NS 365 Query: 324 FLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSP 383 + + + + + + DV L + Sbjct: 366 LAVDPNGQLLSRYEAGAWKVI-------------YYADFARDVAALFQ------------ 400 Query: 384 RFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQK 443 R ++K S ++L+ I + + + +G ++G+LD TG Sbjct: 401 --------RLDAPFSSAKIASLVETLK-----LIVPQQQNPARQLIGFRNGVLDTRTGLF 447 Query: 444 VKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE-SEEVMDYFTRCVGMALL 495 K+ ++ + + + F + + E D + M L Sbjct: 448 SPHDKKHWLRTLCEVDYTQPVDGESLETHAPAFWRWLDRAAGFNPEKRDIILAALFMVLA 507 Query: 496 GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIR 555 Q F+ + G GGSGKS L + G +A + R Sbjct: 508 NRYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNATSATIEMLESPR---------ERAA 558 Query: 556 LMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLF 615 L+G ++ + + + A +K +TGGD ++ Y N YS V N + Sbjct: 559 LIGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYQNAYSTHIP-AVILAVNNNPMR 616 Query: 616 VRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDV 673 + RR +++ F I RD +K+ + ++ Sbjct: 617 FTDRSGGVSRRRVILHFPDQIAPEERDTQLKEKI-ASELAVIVRQLMQ----------RF 665 Query: 674 DIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGENL------------WEESH 712 P + + ++ D+ + ++ + + Sbjct: 666 SDPMSARTLLQSQQNSDEALTIKRDADSAFDFCG-YLEVLPDTTGMFMGNANIVPRQPRT 724 Query: 713 SLAKSYSEYREQEL--NYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWK 761 L +Y Y E N + + + L LK+ G +R + Sbjct: 725 YLYHAYLVYMEANGYKNTLSLTMFGKGLPLMLKEYGLQYEKRRTNQGMQTN 775 >gi|15829557|ref|NP_308330.1| DNA primase [Escherichia coli O157:H7 str. Sakai] gi|168749120|ref|ZP_02774142.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC4113] gi|168755822|ref|ZP_02780829.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC4401] gi|168761913|ref|ZP_02786920.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC4501] gi|168769623|ref|ZP_02794630.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC4486] gi|168775431|ref|ZP_02800438.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC4196] gi|168782620|ref|ZP_02807627.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC4076] gi|168788540|ref|ZP_02813547.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC869] gi|168799812|ref|ZP_02824819.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC508] gi|195937755|ref|ZP_03083137.1| putative DNA primase [Escherichia coli O157:H7 str. EC4024] gi|208809690|ref|ZP_03252027.1| putative nucleoside triphosphatase, D5 family [Escherichia coli O157:H7 str. EC4206] gi|208814873|ref|ZP_03256052.1| putative nucleoside triphosphatase, D5 family [Escherichia coli O157:H7 str. EC4045] gi|208822948|ref|ZP_03263266.1| putative nucleoside triphosphatase, D5 family [Escherichia coli O157:H7 str. EC4042] gi|209396448|ref|YP_002268896.1| putative nucleoside triphosphatase, D5 family [Escherichia coli O157:H7 str. EC4115] gi|217324819|ref|ZP_03440903.1| nucleoside triphosphatase, D5 family [Escherichia coli O157:H7 str. TW14588] gi|254791433|ref|YP_003076270.1| alpha replication protein of prophage CP-933I [Escherichia coli O157:H7 str. TW14359] gi|261223633|ref|ZP_05937914.1| alpha replication protein of prophage CP-933I [Escherichia coli O157:H7 str. FRIK2000] gi|261255948|ref|ZP_05948481.1| alpha replication protein of prophage CP-933I [Escherichia coli O157:H7 str. FRIK966] gi|13359760|dbj|BAB33726.1| putative DNA primase [Escherichia coli O157:H7 str. Sakai] gi|187769062|gb|EDU32906.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC4196] gi|188016499|gb|EDU54621.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC4113] gi|188999907|gb|EDU68893.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC4076] gi|189356863|gb|EDU75282.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC4401] gi|189361353|gb|EDU79772.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC4486] gi|189367685|gb|EDU86101.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC4501] gi|189371667|gb|EDU90083.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC869] gi|189377822|gb|EDU96238.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC508] gi|208729491|gb|EDZ79092.1| putative nucleoside triphosphatase, D5 family [Escherichia coli O157:H7 str. EC4206] gi|208731521|gb|EDZ80209.1| putative nucleoside triphosphatase, D5 family [Escherichia coli O157:H7 str. EC4045] gi|208737141|gb|EDZ84825.1| putative nucleoside triphosphatase, D5 family [Escherichia coli O157:H7 str. EC4042] gi|209157848|gb|ACI35281.1| putative nucleoside triphosphatase, D5 family [Escherichia coli O157:H7 str. EC4115] gi|217321040|gb|EEC29464.1| nucleoside triphosphatase, D5 family [Escherichia coli O157:H7 str. TW14588] gi|254590833|gb|ACT70194.1| alpha replication protein of prophage CP-933I [Escherichia coli O157:H7 str. TW14359] gi|320192406|gb|EFW67050.1| DNA primase , phage-associated [Escherichia coli O157:H7 str. EC1212] gi|320638547|gb|EFX08255.1| alpha replication protein of prophage CP-933I [Escherichia coli O157:H7 str. G5101] gi|320644008|gb|EFX13088.1| alpha replication protein of prophage CP-933I [Escherichia coli O157:H- str. 493-89] gi|320649290|gb|EFX17841.1| alpha replication protein of prophage CP-933I [Escherichia coli O157:H- str. H 2687] gi|326338838|gb|EGD62656.1| DNA primase , phage-associated [Escherichia coli O157:H7 str. 1125] gi|326343458|gb|EGD67222.1| DNA primase , phage-associated [Escherichia coli O157:H7 str. 1044] Length = 777 Score = 145 bits (366), Expect = 2e-32, Method: Composition-based stats. Identities = 72/531 (13%), Positives = 149/531 (28%), Gaps = 101/531 (19%) Query: 268 KWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFS----DAYNKAMFSIYKKGH 323 W+ D R + + + F+ + + YK Sbjct: 290 DWN--DAFTQNGEEATRHAIHEVIKPAVASPFDTMSEAEFTALSVSEKAQRVVDHYK-NS 346 Query: 324 FLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSP 383 + + + + + + DV L + Sbjct: 347 LAVDPNGQLLSRYEAGAWKVI-------------YYADFARDVAALFQ------------ 381 Query: 384 RFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQK 443 R ++K S ++L+ I + + + +G ++G+LD TG Sbjct: 382 --------RLDAPFSSAKIASLVETLK-----LIVPQQQNPARQLIGFRNGVLDTRTGLF 428 Query: 444 VKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE-SEEVMDYFTRCVGMALL 495 K+ ++ + + + F + + E D + M L Sbjct: 429 SPHDKKHWLRTLCEVDYTQPVDGESLETHAPAFWRWLDRAAGFNPEKRDIILAALFMVLA 488 Query: 496 GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIR 555 Q F+ + G GGSGKS L + G +A + R Sbjct: 489 NRYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNATSATIEMLESPR---------ERAA 539 Query: 556 LMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLF 615 L+G ++ + + + A +K +TGGD ++ Y N YS V N + Sbjct: 540 LIGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYQNAYSTHIP-AVILAVNNNPMR 597 Query: 616 VRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDV 673 + RR +++ F I RD +K+ + ++ Sbjct: 598 FTDRSGGVSRRRVILHFPDQIAPEERDTQLKEKI-ASELAVIVRQLMQ----------RF 646 Query: 674 DIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGENL------------WEESH 712 P + + ++ D+ + ++ + + Sbjct: 647 SDPMSARTLLQSQQNSDEALTIKRDADSAFDFCG-YLEVLPDTTGMFMGNANIVPRQPRT 705 Query: 713 SLAKSYSEYREQEL--NYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWK 761 L +Y Y E N + + + L LK+ G +R + Sbjct: 706 YLYHAYLVYMEANGYKNTLSLTMFGKGLPLMLKEYGLQYEKRRTNQGMQTN 756 >gi|268589891|ref|ZP_06124112.1| bacteriophage P4 DNA primase [Providencia rettgeri DSM 1131] gi|291314769|gb|EFE55222.1| bacteriophage P4 DNA primase [Providencia rettgeri DSM 1131] Length = 800 Score = 145 bits (365), Expect = 3e-32, Method: Composition-based stats. Identities = 69/453 (15%), Positives = 151/453 (33%), Gaps = 82/453 (18%) Query: 365 DVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLL-D 423 V+ S + K+S+ R + EN S + + + ++ + + Sbjct: 381 TVYTYSGVMWEPIKDSELSREMADF------FIENETHFSMRRITGVIDVLKVIAEPMGE 434 Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGE-------PSQEFLDLVSGY 476 S +G +G+L+ +T + ++ G + E + F +S Sbjct: 435 SDIDLIGFTNGVLNTKTHEFRPHNANDWLLHQNGITYTEPAAGENLKDNAPNFTAWLSHV 494 Query: 477 F-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535 E + M + Q FI GVGGSGKS ++ + G + + Sbjct: 495 SGGDEAKARRIKAGLYMVFANRHDWQLFIEATGVGGSGKSVFAHIAELLAGKHNTSSGDL 554 Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595 + R + +G +++++ + + A +K +TGGD + Y Sbjct: 555 KALDDARGR---------AQFVGKKLILLPDQPKYVGDGAG-LKAITGGDPVGIDPKYEK 604 Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDASFAQKLETKYTL 653 +S F+ N+ + + RR ++ F++ ++ +D + +K++ Sbjct: 605 QFS-MVMKSVVFMTGNRPMQFTERSNGVGRRRVIFHFNETVSEDKKDKNLPEKIQ-AEIP 662 Query: 654 EAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEER---------QGTDTYQAWIDDC---- 700 + L+ + P+ K E+R + TD+ + C Sbjct: 663 VIIRDLLR----------EFPNPDTANKLLIEQRGSGEAVDVKRETDSLIDF---CAYLV 709 Query: 701 -CDIGENLW---------EESHSLAKSYSEYREQELNYDRKRISTRTVTL----NLKQKG 746 + E ++ L +Y Y + N R ++ T LK+ G Sbjct: 710 ALERVEGMFMGNANISPPAPRKYLYHAYMAYMQGNGN--RNPLTLTTFGRSIDGALKELG 767 Query: 747 FIGGIKREKIEKEWKSKRIIKGLKLKPAFESVD 779 K++ R +G++ ++ Sbjct: 768 -----------KKYIKDRFTQGVRTNLELNELE 789 >gi|320662430|gb|EFX29819.1| Alpha replication protein of prophage CP-933I [Escherichia coli O55:H7 str. USDA 5905] Length = 777 Score = 145 bits (365), Expect = 3e-32, Method: Composition-based stats. Identities = 72/531 (13%), Positives = 149/531 (28%), Gaps = 101/531 (19%) Query: 268 KWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFS----DAYNKAMFSIYKKGH 323 W+ D R + + + F+ + + YK Sbjct: 290 DWN--DAFTQNGEEATRHAIHEVIKPAVASPFDTMSEAEFTALSVSEKAQRVVDHYK-NS 346 Query: 324 FLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSP 383 + + + + + + DV L + Sbjct: 347 LAVDPNGQLLSRYEAGAWKVI-------------YYADFARDVAALFQ------------ 381 Query: 384 RFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQK 443 R ++K S ++L+ I + + + +G ++G+LD TG Sbjct: 382 --------RLDAPFSSAKIASLVENLK-----LIVPQQQNPARQLIGFRNGVLDTRTGLF 428 Query: 444 VKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE-SEEVMDYFTRCVGMALL 495 K+ ++ + + + F + + E D + M L Sbjct: 429 SPHDKKHWLRTLCEVDYTQPVDGESLETHAPAFWRWLDRAAGFNPEKRDIILAALFMVLA 488 Query: 496 GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIR 555 Q F+ + G GGSGKS L + G +A + R Sbjct: 489 NRYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNATSATIEMLESPR---------ERAA 539 Query: 556 LMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLF 615 L+G ++ + + + A +K +TGGD ++ Y N YS V N + Sbjct: 540 LIGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYQNAYSTHIP-AVILAVNNNPMR 597 Query: 616 VRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDV 673 + RR +++ F I RD +K+ + ++ Sbjct: 598 FTDRSGGVSRRRVILHFPDQIAPEERDTQLKEKI-ASELAVIVRQLMQ----------RF 646 Query: 674 DIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGENL------------WEESH 712 P + + ++ D+ + ++ + + Sbjct: 647 SDPMSARTLLQSQQNSDEALTIKRDADSAFDFCG-YLEVLPDTTGMFMGNANIVPRQPRT 705 Query: 713 SLAKSYSEYREQEL--NYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWK 761 L +Y Y E N + + + L LK+ G +R + Sbjct: 706 YLYHAYLVYMEANGYKNTLSLTMFGKGLPLMLKEYGLQYEKRRTNQGMQTN 756 >gi|291281168|ref|YP_003497986.1| Alpha replication protein of prophage CP-933I [Escherichia coli O55:H7 str. CB9615] gi|290761041|gb|ADD55002.1| Alpha replication protein of prophage CP-933I [Escherichia coli O55:H7 str. CB9615] Length = 796 Score = 145 bits (365), Expect = 3e-32, Method: Composition-based stats. Identities = 72/531 (13%), Positives = 149/531 (28%), Gaps = 101/531 (19%) Query: 268 KWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFS----DAYNKAMFSIYKKGH 323 W+ D R + + + F+ + + YK Sbjct: 309 DWN--DAFTQNGEEATRHAIHEVIKPAVASPFDTMSEAEFTALSVSEKAQRVVDHYK-NS 365 Query: 324 FLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSP 383 + + + + + + DV L + Sbjct: 366 LAVDPNGQLLSRYEAGAWKVI-------------YYADFARDVAALFQ------------ 400 Query: 384 RFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQK 443 R ++K S ++L+ I + + + +G ++G+LD TG Sbjct: 401 --------RLDAPFSSAKIASLVENLK-----LIVPQQQNPARQLIGFRNGVLDTRTGLF 447 Query: 444 VKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE-SEEVMDYFTRCVGMALL 495 K+ ++ + + + F + + E D + M L Sbjct: 448 SPHDKKHWLRTLCEVDYTQPVDGESLETHAPAFWRWLDRAAGFNPEKRDIILAALFMVLA 507 Query: 496 GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIR 555 Q F+ + G GGSGKS L + G +A + R Sbjct: 508 NRYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNATSATIEMLESPR---------ERAA 558 Query: 556 LMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLF 615 L+G ++ + + + A +K +TGGD ++ Y N YS V N + Sbjct: 559 LIGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYQNAYSTHIP-AVILAVNNNPMR 616 Query: 616 VRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDV 673 + RR +++ F I RD +K+ + ++ Sbjct: 617 FTDRSGGVSRRRVILHFPDQIAPEERDTQLKEKI-ASELAVIVRQLMQ----------RF 665 Query: 674 DIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGENL------------WEESH 712 P + + ++ D+ + ++ + + Sbjct: 666 SDPMSARTLLQSQQNSDEALTIKRDADSAFDFCG-YLEVLPDTTGMFMGNANIVPRQPRT 724 Query: 713 SLAKSYSEYREQEL--NYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWK 761 L +Y Y E N + + + L LK+ G +R + Sbjct: 725 YLYHAYLVYMEANGYKNTLSLTMFGKGLPLMLKEYGLQYEKRRTNQGMQTN 775 >gi|161505697|ref|YP_001572809.1| hypothetical protein SARI_03873 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|160867044|gb|ABX23667.1| hypothetical protein SARI_03873 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] Length = 777 Score = 145 bits (365), Expect = 3e-32, Method: Composition-based stats. Identities = 61/370 (16%), Positives = 111/370 (30%), Gaps = 58/370 (15%) Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478 R +G ++G+LD TG K ++ F + +F + Sbjct: 411 RRLIGFRNGVLDTATGTFSPHHKAHWLRTLCDVDFTPPVEGETLETHAPDFWRWLDRAAG 470 Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537 +E D + M L Q F+ + G GGSGKS L + G +A Sbjct: 471 GRQEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNATSATIET 530 Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597 + R L+G ++ + + + A +K +TGGD ++ Y + Y Sbjct: 531 LESPR---------ERAALIGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYKDAY 580 Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEA 655 S V N + + RR ++I F + I RD K+ Sbjct: 581 STHIP-AVILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPEERDPQLKNKIAR-ELAVI 638 Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWID--DCCDIG 704 + ++ P + + ++ D + + Sbjct: 639 VRQLMQ----------KFSDPMAARTLLQSQQNSDEALSIKRDADPTFDFCGYLEALPEP 688 Query: 705 ENLWE---------ESHSLAKSYSEYREQELNYDRKRISTRTVTL----NLKQKGFIGGI 751 E ++ L +Y Y E R +S LK+ G Sbjct: 689 EGMYIGNANIIPRQPRLYLYHAYLAYMEAHGY--RNTLSLTMFGKGLPAMLKEYGLSYEK 746 Query: 752 KREKIEKEWK 761 +R+ + Sbjct: 747 RRKNQGIQTN 756 >gi|320656999|gb|EFX24834.1| alpha replication protein of prophage CP-933I [Escherichia coli O55:H7 str. 3256-97 TW 07815] Length = 777 Score = 145 bits (365), Expect = 3e-32, Method: Composition-based stats. Identities = 71/531 (13%), Positives = 148/531 (27%), Gaps = 101/531 (19%) Query: 268 KWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFS----DAYNKAMFSIYKKGH 323 W+ D R + + + F+ + + YK Sbjct: 290 DWN--DAFTQNGEEATRHAIHEVIKPAVASPFDTMSEAEFTALSVSEKAQRVVDHYK-NS 346 Query: 324 FLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSP 383 + + + + + + DV L + Sbjct: 347 LAVDPNGQLLSRYEAGAWKVI-------------YYADFARDVAALFQ------------ 381 Query: 384 RFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQK 443 R ++K S ++L+ I + + + +G ++G+ D TG Sbjct: 382 --------RLDAPFSSAKIASLVETLK-----LIVPQQQNPARQLIGFRNGVFDTRTGLF 428 Query: 444 VKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE-SEEVMDYFTRCVGMALL 495 K+ ++ + + + F + + E D + M L Sbjct: 429 SPHDKKHWLRTLCEVDYTQPVDGESLETHAPAFWRWLDRAAGFNPEKRDIILAALFMVLA 488 Query: 496 GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIR 555 Q F+ + G GGSGKS L + G +A + R Sbjct: 489 NRYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNATSATIEMLESPR---------ERAA 539 Query: 556 LMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLF 615 L+G ++ + + + A +K +TGGD ++ Y N YS V N + Sbjct: 540 LIGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYQNAYSTHIP-AVILAVNNNPMR 597 Query: 616 VRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDV 673 + RR +++ F I RD +K+ + ++ Sbjct: 598 FTDRSGGVSRRRVILHFPDQIAPEERDTQLKEKI-ASELAVIVRQLMQ----------RF 646 Query: 674 DIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGENL------------WEESH 712 P + + ++ D+ + ++ + + Sbjct: 647 SDPMSARTLLQSQQNSDEALTIKRDADSAFDFCG-YLEVLPDTTGMFMGNANIVPRQPRT 705 Query: 713 SLAKSYSEYREQEL--NYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWK 761 L +Y Y E N + + + L LK+ G +R + Sbjct: 706 YLYHAYLVYMEANGYKNTLSLTMFGKGLPLMLKEYGLQYEKRRTNQGMQTN 756 >gi|325959878|ref|YP_004291344.1| phage/plasmid primase, P4 family [Methanobacterium sp. AL-21] gi|325331310|gb|ADZ10372.1| phage/plasmid primase, P4 family [Methanobacterium sp. AL-21] Length = 584 Score = 145 bits (364), Expect = 4e-32, Method: Composition-based stats. Identities = 66/433 (15%), Positives = 142/433 (32%), Gaps = 27/433 (6%) Query: 335 KKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSE-EPEDNNKNSKSPRFWFNTDYRR 393 K + + + +++ + + + E D +S + D ++ Sbjct: 156 KYSSIFKFEKDIKRSEKEQALLELYKHINTKYNIIIDKESYDLCIYDESEGIYKAYDEKK 215 Query: 394 QNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYIT 453 + E + + +++ + + + ++++ET + K ++ Sbjct: 216 FSRFLKKVVGKEFFVDEVKKLMGLFNEIKEEDPNHVAFNNCLMNIETLETRKFDPNIFTR 275 Query: 454 KSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSG 513 + S F + + F+ F + VG GN + + G G +G Sbjct: 276 FKVPYNWNPSADSPFFKEKICEIFDDPGKFQTFLQIVGYLFAKGNPHNKLFLLMGKGANG 335 Query: 514 KSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI 573 KS LM +I F N + + + L L+G R+ ++S+ Sbjct: 336 KSLLMQIISAIFINSSAAVP----------LQDFQKDFGLQPLIGKRVNLLSDLPIATIE 385 Query: 574 NAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFD 633 +IK +TGGD +T + + + N+ + + A WRR ++I + Sbjct: 386 ETGQIKAITGGDDITINRKFKDPLTT-KLKCKIVGAGNRLPKIMDDSYALWRRIVIIKLE 444 Query: 634 KPIAN--RDASFAQKLETK-YTLE--AKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQ 688 K RD +KL +E ++ K G D EE + Sbjct: 445 KTFDGDSRDTKLTEKLLNDTEGMEWFIFN-AIQAYKKIRETGWTEDTYREIR---EEAIK 500 Query: 689 GTDTYQAWIDD---CCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK 745 +D + + + + + S +++ + R + +K+ Sbjct: 501 NSDP-ALYASEQLFEVTDSPDNFLTRKEIVDSINDFLIEHDL--RIPANKSEYYDAVKKC 557 Query: 746 GFIGGIKREKIEK 758 G G KR EK Sbjct: 558 GAKEGQKRILEEK 570 >gi|194442419|ref|YP_002042010.1| bacteriophage P4 DNA primase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194401082|gb|ACF61304.1| bacteriophage P4 DNA primase [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 777 Score = 145 bits (364), Expect = 4e-32, Method: Composition-based stats. Identities = 66/405 (16%), Positives = 122/405 (30%), Gaps = 63/405 (15%) Query: 391 YRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKEL 450 R + + K S ++L+ T R +G ++G+LD TG K Sbjct: 381 QRLRAPFSSGKIASVVETLKLIIPQQDTPA-----RRLIGFRNGVLDTATGTFSPHHKSH 435 Query: 451 YITKSTGTPFVEGEP-------SQEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQR 502 ++ F + +F + +E D + M L Q Sbjct: 436 WLRTLCDVDFTPPVEGETLETHAPDFWRWLDRAAGGRQEKRDVILAALFMVLANRYDWQL 495 Query: 503 FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIV 562 F+ + G GGSGKS L + G +A + R L+G ++ Sbjct: 496 FLEVTGPGGSGKSILAEIATMLAGEDNATSATIETLESPR---------ERAALIGFSLI 546 Query: 563 IISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDA 622 + + + A +K +TGGD ++ Y + YS V N + + Sbjct: 547 RLPDQEKWSGDGAG-LKAITGGDAVSVDPKYKDAYSTHIP-AVILAVNNNPMRFTDRSGG 604 Query: 623 WWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCL 680 RR +++ F + IA RD K+ + ++ P Sbjct: 605 VSRRRVILHFPEQIAPDERDPQLKNKIAR-ELAVIVRQLMQ----------KFSDPMTAR 653 Query: 681 KAKEEE---------RQGTDTYQAWID--DCCDIGENLWE---------ESHSLAKSYSE 720 + + ++ D + + E ++ L +Y Sbjct: 654 ALLQSQQNSDEALSIKREADPTFDFCGYLEALPEPEGMYIGNASIIPRQPRLYLYHAYLA 713 Query: 721 YREQELNYDRKRISTRTVTL----NLKQKGFIGGIKREKIEKEWK 761 Y E R +S LK+ G +R+ + Sbjct: 714 YMEAHGY--RNTLSLTMFGKGLPAMLKEYGLSYEKRRKNQGIQTN 756 >gi|253687111|ref|YP_003016301.1| phage/plasmid primase, P4 family [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251753689|gb|ACT11765.1| phage/plasmid primase, P4 family [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 775 Score = 145 bits (364), Expect = 4e-32, Method: Composition-based stats. Identities = 67/441 (15%), Positives = 127/441 (28%), Gaps = 62/441 (14%) Query: 364 EDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLD 423 E F R + S S +L+ Sbjct: 354 ETFFQYQNGAWKVLSYRLLSRDIAALFQKIHAPFTASGIGSVLDTLKLIIPMQEKP---- 409 Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEG-------EPSQEFLDLVSGY 476 R +G ++G+ D +GQ +E ++ + + + F ++ Sbjct: 410 -QRRLIGFRNGVFDTASGQFKPHRREHWLNTVNDVDYTPFKAGENLADNAPHFWRWLTRA 468 Query: 477 FES-EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535 + + + + M L Q F+ + G GGSGKS L + G A Sbjct: 469 AGNSADKQERILAALFMVLANCYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNTTAATI 528 Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595 + I +R + ++G ++++ + + A IK +TGGD + Y + Sbjct: 529 NTIESSRERSS---------IIGFSLIVLPDQEKWSGDGAG-IKAITGGDAVMVDPKYRD 578 Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTL 653 YS V N + + RR ++I F + I RD +K+ Sbjct: 579 AYSTRIP-AVILAVNNSPMRFSDRSGGVSRRRVIIHFGETIPASERDPKLKEKI-RAELA 636 Query: 654 EAKKWFLKGVKAYISKGLDVDIPEVCLKAKE---------EERQGTDTYQAWIDDCCDIG 704 + +K P + E ++ D + G Sbjct: 637 VIVRHLMK----------RFADPNDARTLLQAQQHSAEALEIKRQADPLVDFCGYLLAHG 686 Query: 705 ENL-----------WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKR 753 + L +Y + E + +K IS L + + Sbjct: 687 DTTGLYMGNANITPRNPRKYLYHAYLSFMESHGH--QKPISLTAFGKVLPN--MMSEYGQ 742 Query: 754 EKIEKEWKSKRIIKGLKLKPA 774 ++ I L+LK Sbjct: 743 TYLKGRTNQG-IQTNLELKDE 762 >gi|300172883|ref|YP_003772048.1| poxvirus D5 protein [Leuconostoc gasicomitatum LMG 18811] gi|299887261|emb|CBL91229.1| poxvirus D5 protein, putative [Leuconostoc gasicomitatum LMG 18811] Length = 467 Score = 145 bits (364), Expect = 4e-32, Method: Composition-based stats. Identities = 61/431 (14%), Positives = 132/431 (30%), Gaps = 46/431 (10%) Query: 326 YTADTKAWYKKDKN-NVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPR 384 + A +Y + N Y+++ K ++ ++ V L Sbjct: 43 FVAKETHFYTDNNNLAGYLFNGQYWKRYKNVKQADNALSSRVATL--------------- 87 Query: 385 FWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSD-LLDSSSRFLGEQDGILDLETGQK 443 + + + + K+ + ++ + + +G LD+ T + Sbjct: 88 -----LKQNKKLTSAKQVKNIVDLIRVITVKDVADYIDFTDKPYMVSFTNGTLDMRTLEI 142 Query: 444 VKPTKELYITKSTGTPFVEGE-PSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGN-KAQ 501 + + P + + P+ + + + E + + +G Q Sbjct: 143 KPNAPQYHALGGLDYPVSDKDLPTPKTDEFFTRLLGD-ENAELLYKFIGYGFKRNYLPFQ 201 Query: 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRI 561 F+ + G GG+GK T + I + V L+G Sbjct: 202 NFVILYGKGGNGKGTALTYIGQKLYSGNVSELSLQAFGDKFKTVG---------LVGKYA 252 Query: 562 VIISETNENDEINAAKIK-QMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620 I S+ N N +K ++G + +S T F N +R D Sbjct: 253 NIGSDIPANYMPNTENLKLAVSGKEKFEVESKGVQAFS-IVNYATLFFSANDLPNIR-RD 310 Query: 621 DAWWRRYIVIP-----FDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDI 675 RR +V+ F D F + + +K ++I Sbjct: 311 SGLDRRPLVLTTQGKGFTNADGKSDL-FDESELLDERPAFTRKVIKMFMDAERAR-TLNI 368 Query: 676 PEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIST 735 PE KA + + D W+D+ + ++ + + + +S R+ E ++ I+ Sbjct: 369 PENVQKATADWLKSADIVSQWLDEHTEEEKDRRPTAKYMYQQFS--RDIEDMGMQETINR 426 Query: 736 RTVTLNLKQKG 746 T ++ G Sbjct: 427 NTFYSRMENLG 437 >gi|170022873|ref|YP_001719378.1| P4 family phage/plasmid primase [Yersinia pseudotuberculosis YPIII] gi|169749407|gb|ACA66925.1| phage/plasmid primase, P4 family [Yersinia pseudotuberculosis YPIII] Length = 477 Score = 145 bits (364), Expect = 4e-32, Method: Composition-based stats. Identities = 72/482 (14%), Positives = 149/482 (30%), Gaps = 74/482 (15%) Query: 320 KKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKN 379 + L D D + V+ ++ + + + LS E Sbjct: 36 RGEVLLARYDGDLAVHGDSDAVHHYNGIIWQPVSD------------KALSREMAAIFIE 83 Query: 380 SKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLE 439 S+ P K+ +++ T ++ +G +G+ D Sbjct: 84 SRIPYSM-------------PAMKNAVDTMKLSLPIMGT-----TARNLIGFSNGVFDTR 125 Query: 440 TGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVS-GYFESEEVMDYFTRCVG 491 G + +E ++ ++ F++ E S F ++ + D + Sbjct: 126 EGLFREHRQEDWLLIASDVEFIQAEEGESLDTHSPAFWKWLNWSTAGNARKTDRVLAALY 185 Query: 492 MALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANP 551 M + Q F+ I G GGSGKS L + G ++A + + R Sbjct: 186 MVMANRYDWQLFLEITGAGGSGKSVLAEICTMLAGKANTVSASMKALEEPR--------- 236 Query: 552 SLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPN 611 ++G ++I+ + + A IK +TGGD + + YS V N Sbjct: 237 ERALIVGYSLIIMPDMSRYAGDGAG-IKAITGGDKVAIDPKHKPPYSTRIP-AVILAVNN 294 Query: 612 KHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISK 669 + + RR ++ F + + RD ++K+E + L Sbjct: 295 NAMSFSDRSGGISRRRVIFNFSQVVPENERDPMLSEKIE-AELPVIIRHLLTRFADQGEA 353 Query: 670 GLDVDIPEVCLKAKEEERQGTDTY--------------QAWIDDCCDIGENLWEESHSLA 715 + + +A ++ D+ +I + I + L Sbjct: 354 KRLLFEQQKSEEALAI-KREGDSLVDFCGYLMASVQCDGLFIGNASII---PFSPRKYLY 409 Query: 716 KSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAF 775 +Y Y + K IS ++ G + +E I K+ + ++L Sbjct: 410 HAYLAYMQSNGLS--KPISLNRFATDMP--GSMAEYGKEYIRKKSTKGNMRSNIRLADDA 465 Query: 776 ES 777 + Sbjct: 466 DE 467 >gi|218442562|ref|YP_002380883.1| primase [Cyanothece sp. PCC 7424] gi|218175333|gb|ACK74064.1| Primase 2 [Cyanothece sp. PCC 7424] Length = 305 Score = 144 bits (363), Expect = 5e-32, Method: Composition-based stats. Identities = 52/289 (17%), Positives = 88/289 (30%), Gaps = 43/289 (14%) Query: 18 FKLIPLRLGDKRPQRLGKWEEQLLSSEKIDK-----------------LP--ACGFGFVC 58 + LIP+ L K+P W+ L+ +++ P G G + Sbjct: 23 WPLIPVSLN-KQPIGSQ-WQNHPLTRDQLITNLTQRGYIVVLNKKSQFYPIRPPGIGILL 80 Query: 59 GVGEQP-LYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNK----EGI 113 G ++ L A D+D L T G+ + F++ + Sbjct: 81 GHNKREFLIALDVDGDSAIAYLH--RLIPSLPRTVAFTSGRLGRCQYLFKLPSNQSIKPF 138 Query: 114 KKKKTTESTQGHLDILGCGQYFVAYNI-HPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEY 172 K L+I GQ V HP T + Y W + +V E Sbjct: 139 KVITGPGEA---LEIRSTGQQSVLPPSPHPLTGQYY-WVGGCNPNEVNVALAPPE----- 189 Query: 173 LFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPV 232 L Q + P + + + L+C + + +D WI + Sbjct: 190 LITLSQSHSSKKKIQATDNNPFVSPVRGK-LTTSIEAALSALACIHPSYADE-YDSWIRI 247 Query: 233 VMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTA 281 M++H S WS+ + Y +YKW +F I Sbjct: 248 GMSLHSI---SYSLLHDWDSWSQSSAKYKPGECHYKWASFKGSGISART 293 >gi|23097625|ref|NP_691091.1| primase [Oceanobacillus iheyensis HTE831] gi|22775848|dbj|BAC12126.1| primase [Oceanobacillus iheyensis HTE831] Length = 619 Score = 144 bits (362), Expect = 6e-32, Method: Composition-based stats. Identities = 49/332 (14%), Positives = 101/332 (30%), Gaps = 26/332 (7%) Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPF----------VEGEPSQEFLDLV 473 +GI D +T Q + + + + + Sbjct: 221 KERHLFAVNNGIYDQKTRQLMPFNPKYVYLTKIPVEYKAHPINPVKTSPDGYQWDVESWL 280 Query: 474 SGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGV-GGSGKSTLMNLIKYAFGNQYVI 531 + + + L + I G +GK T+ LIK G Sbjct: 281 REIMDNDAGSTTLMWQVIADCLQPNYSRHKSIWFYSEKGNNGKGTVGQLIKNLLGKGNYA 340 Query: 532 NAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK-IKQMTGGDCMTAR 590 + +D + L+ I E + + I++ K K GD + Sbjct: 341 SLSVADFNHEFLKSS---------LVNVAANIADENDVDIYIDSVKDYKASVTGDDININ 391 Query: 591 LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETK 650 + YG + + + N ++ ++++RR I++PF K N K + Sbjct: 392 IKYGQP-LRIQFNGSNIQMMNGLPKTKDKSESFYRRIILVPFLKSFTNNGERTYIKDDYI 450 Query: 651 YTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEE 710 E ++ L KA + +P + + R+ ++ + ++ + Sbjct: 451 NQQEVLEYVL--HKALNMDFDEFIVPARSAELLDCYREKNNSVMEFWNELKEEFVWDLLP 508 Query: 711 SHSLAKSYSEYREQELNYDRKRISTRTVTLNL 742 + L Y ++ E N K + RT L Sbjct: 509 TDFLYAIYEKWSEMN-NPSGKLMGKRTFKDTL 539 >gi|313884355|ref|ZP_07818117.1| nucleoside triphosphatase, D5 family [Eremococcus coleocola ACS-139-V-Col8] gi|312620433|gb|EFR31860.1| nucleoside triphosphatase, D5 family [Eremococcus coleocola ACS-139-V-Col8] Length = 619 Score = 144 bits (362), Expect = 7e-32, Method: Composition-based stats. Identities = 51/332 (15%), Positives = 112/332 (33%), Gaps = 20/332 (6%) Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF-----------LDL 472 + + + + ET Q++ + + T E PS + LD Sbjct: 203 DDPNIIALNNTLFNYETKQRIPFSPDYVFLSKLSTNLAESPPSIPYHIKPDGTRINPLDW 262 Query: 473 VSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVI 531 ++ +++++ + ++ + G +GKST + +I G V+ Sbjct: 263 INELAADNQKLSQALLVIACACVRPKWIWRQMALLYNSGKNGKSTFLEMINALVGEGNVM 322 Query: 532 NAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI-NAAKIKQMTGGDCMTAR 590 + D+ G +L ++G +V+ +++ N I N K+K + + Sbjct: 323 PSSLEDLSN----TDGAGRFALAGIVGKSLVLCDDSDTNTYIRNTRKLKTLIAHGTIAVE 378 Query: 591 LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETK 650 N +S N R+ AW R +++PF + + K Sbjct: 379 RKGENMFS-YRPLIFLLAAANDLPKSRDKSQAWLDRLVLVPFPARFDGEEDDKLIQPWVK 437 Query: 651 YTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEE 710 E ++ L + + K ++ P KEE D + + + Sbjct: 438 SR-EFSEYMLYHLLVEMDKVYELLEPSDSKALKEEYVMENDPVVEFYHEYIANSHEDFLA 496 Query: 711 SHSLAKSYSEYREQELNYDRKRISTRTVTLNL 742 + L + ++ + +Q + +S RT L Sbjct: 497 NCYLWELFNWWLKQN-RPNTSVMSNRTFIKRL 527 >gi|22127140|ref|NP_670563.1| phage DNA primase [Yersinia pestis KIM 10] gi|21960200|gb|AAM86814.1|AE013927_12 putative phage DNA primase [Yersinia pestis KIM 10] Length = 697 Score = 144 bits (362), Expect = 7e-32, Method: Composition-based stats. Identities = 63/445 (14%), Positives = 129/445 (28%), Gaps = 52/445 (11%) Query: 361 SMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSD 420 + E V+ +E D + R + ++ ++++ Sbjct: 266 AESETVYHYDDERWDKLPDGVLRRELVMIFNANDTPYSPAGIRNAIEAMKLQIPIMGEPP 325 Query: 421 LLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPS-------QEFLDLV 473 +G Q+G+ DL+ Q ++ F E +P F + Sbjct: 326 -----RHLIGFQNGVYDLKAKQFRPHRANDWLQHHNDIIFTEPQPDENLAHHAPHFTKWL 380 Query: 474 SGYFESE-EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532 + E M + M L Q F+ + G GGSGKS + G Q + Sbjct: 381 AHAANDELPKMARIKAALFMILSNRFDWQLFLEVTGEGGSGKSVFTYIATLLAGRQNTAS 440 Query: 533 AEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK-IKQMTGGDCMTARL 591 + + Q R + +G + I+ ++ + IK +TGGD + Sbjct: 441 GNMAALDQARGR---------AQFVGKSL--ITLPDQVKYVGEGAGIKAITGGDLVEIDG 489 Query: 592 NYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDAS-FAQKLETK 650 Y +S + N+ + RR ++ F+ P+ D + Sbjct: 490 KYEKQFSTLL-TAVVLATNNEPMSFTERQGGIARRRVIFAFNHPVKEADKDPLIGEKIAA 548 Query: 651 YTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE----- 705 + L + +A ++ D + ++GE Sbjct: 549 ELPVVIRCLLAEFADQDKARKLLLEQRDSREAMG-VKRDADPLYGFCAHIVELGEAVGMY 607 Query: 706 ------NLWEESHSLAKSYSEYREQELNYDRKRIST--RTVTLNLKQKGFIGGIKREKIE 757 + L +Y Y E + ++ + +++ G Sbjct: 608 MGTLAISPHAPRIYLYHAYLAYMEAYGHQRSLSLTKFGKDFPKVMEEFG----------- 656 Query: 758 KEWKSKRIIKGLKLKPAFESVDDNS 782 E+K R KG + ++ Sbjct: 657 AEYKKARTDKGFRYNMDLSDTANDW 681 >gi|45443313|ref|NP_994852.1| putative primase [Yersinia pestis biovar Microtus str. 91001] gi|108806389|ref|YP_650305.1| putative primase [Yersinia pestis Antiqua] gi|108813239|ref|YP_649006.1| primase [Yersinia pestis Nepal516] gi|145597941|ref|YP_001162017.1| primase [Yersinia pestis Pestoides F] gi|150260107|ref|ZP_01916835.1| putative primase [Yersinia pestis CA88-4125] gi|162420203|ref|YP_001608164.1| D5 family nucleoside triphosphatase [Yersinia pestis Angola] gi|165925009|ref|ZP_02220841.1| nucleoside triphosphatase, D5 family [Yersinia pestis biovar Orientalis str. F1991016] gi|165937310|ref|ZP_02225874.1| nucleoside triphosphatase, D5 family [Yersinia pestis biovar Orientalis str. IP275] gi|166010215|ref|ZP_02231113.1| nucleoside triphosphatase, D5 family [Yersinia pestis biovar Antiqua str. E1979001] gi|166212650|ref|ZP_02238685.1| nucleoside triphosphatase, D5 family [Yersinia pestis biovar Antiqua str. B42003004] gi|167399750|ref|ZP_02305268.1| nucleoside triphosphatase, D5 family [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167418869|ref|ZP_02310622.1| nucleoside triphosphatase, D5 family [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425328|ref|ZP_02317081.1| nucleoside triphosphatase, D5 family [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167467327|ref|ZP_02332031.1| nucleoside triphosphatase, D5 family protein [Yersinia pestis FV-1] gi|218928055|ref|YP_002345930.1| putative primase [Yersinia pestis CO92] gi|229837566|ref|ZP_04457728.1| putative primase [Yersinia pestis Pestoides A] gi|229840789|ref|ZP_04460948.1| putative primase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229842652|ref|ZP_04462807.1| putative primase [Yersinia pestis biovar Orientalis str. India 195] gi|229903695|ref|ZP_04518808.1| putative primase [Yersinia pestis Nepal516] gi|270487473|ref|ZP_06204547.1| nucleoside triphosphatase, D5 family [Yersinia pestis KIM D27] gi|294502949|ref|YP_003567011.1| putative primase [Yersinia pestis Z176003] gi|45438181|gb|AAS63729.1| putative primase [Yersinia pestis biovar Microtus str. 91001] gi|108776887|gb|ABG19406.1| plasmid and phage DNA primase [Yersinia pestis Nepal516] gi|108778302|gb|ABG12360.1| plasmid and phage DNA primase [Yersinia pestis Antiqua] gi|115346666|emb|CAL19549.1| putative primase [Yersinia pestis CO92] gi|145209637|gb|ABP39044.1| plasmid and phage DNA primase [Yersinia pestis Pestoides F] gi|149289515|gb|EDM39592.1| putative primase [Yersinia pestis CA88-4125] gi|162353018|gb|ABX86966.1| nucleoside triphosphatase, D5 family [Yersinia pestis Angola] gi|165914784|gb|EDR33397.1| nucleoside triphosphatase, D5 family [Yersinia pestis biovar Orientalis str. IP275] gi|165923209|gb|EDR40360.1| nucleoside triphosphatase, D5 family [Yersinia pestis biovar Orientalis str. F1991016] gi|165990701|gb|EDR43002.1| nucleoside triphosphatase, D5 family [Yersinia pestis biovar Antiqua str. E1979001] gi|166205942|gb|EDR50422.1| nucleoside triphosphatase, D5 family [Yersinia pestis biovar Antiqua str. B42003004] gi|166962863|gb|EDR58884.1| nucleoside triphosphatase, D5 family [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167050458|gb|EDR61866.1| nucleoside triphosphatase, D5 family [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055728|gb|EDR65512.1| nucleoside triphosphatase, D5 family [Yersinia pestis biovar Mediaevalis str. K1973002] gi|229679465|gb|EEO75568.1| putative primase [Yersinia pestis Nepal516] gi|229690962|gb|EEO83016.1| putative primase [Yersinia pestis biovar Orientalis str. India 195] gi|229697155|gb|EEO87202.1| putative primase [Yersinia pestis biovar Orientalis str. PEXU2] gi|229704254|gb|EEO91265.1| putative primase [Yersinia pestis Pestoides A] gi|262360984|gb|ACY57705.1| putative primase [Yersinia pestis D106004] gi|262364924|gb|ACY61481.1| putative primase [Yersinia pestis D182038] gi|270335977|gb|EFA46754.1| nucleoside triphosphatase, D5 family [Yersinia pestis KIM D27] gi|294353408|gb|ADE63749.1| putative primase [Yersinia pestis Z176003] gi|320014044|gb|ADV97615.1| putative primase [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 763 Score = 144 bits (362), Expect = 7e-32, Method: Composition-based stats. Identities = 63/445 (14%), Positives = 129/445 (28%), Gaps = 52/445 (11%) Query: 361 SMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSD 420 + E V+ +E D + R + ++ ++++ Sbjct: 332 AESETVYHYDDERWDKLPDGVLRRELVMIFNANDTPYSPAGIRNAIEAMKLQIPIMGEPP 391 Query: 421 LLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPS-------QEFLDLV 473 +G Q+G+ DL+ Q ++ F E +P F + Sbjct: 392 -----RHLIGFQNGVYDLKAKQFRPHRANDWLQHHNDIIFTEPQPDENLAHHAPHFTKWL 446 Query: 474 SGYFESE-EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532 + E M + M L Q F+ + G GGSGKS + G Q + Sbjct: 447 AHAANDELPKMARIKAALFMILSNRFDWQLFLEVTGEGGSGKSVFTYIATLLAGRQNTAS 506 Query: 533 AEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK-IKQMTGGDCMTARL 591 + + Q R + +G + I+ ++ + IK +TGGD + Sbjct: 507 GNMAALDQARGR---------AQFVGKSL--ITLPDQVKYVGEGAGIKAITGGDLVEIDG 555 Query: 592 NYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDAS-FAQKLETK 650 Y +S + N+ + RR ++ F+ P+ D + Sbjct: 556 KYEKQFSTLL-TAVVLATNNEPMSFTERQGGIARRRVIFAFNHPVKEADKDPLIGEKIAA 614 Query: 651 YTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE----- 705 + L + +A ++ D + ++GE Sbjct: 615 ELPVVIRCLLAEFADQDKARKLLLEQRDSREAMG-VKRDADPLYGFCAHIVELGEAVGMY 673 Query: 706 ------NLWEESHSLAKSYSEYREQELNYDRKRIST--RTVTLNLKQKGFIGGIKREKIE 757 + L +Y Y E + ++ + +++ G Sbjct: 674 MGTLAISPHAPRIYLYHAYLAYMEAYGHQRSLSLTKFGKDFPKVMEEFG----------- 722 Query: 758 KEWKSKRIIKGLKLKPAFESVDDNS 782 E+K R KG + ++ Sbjct: 723 AEYKKARTDKGFRYNMDLSDTANDW 747 >gi|300724899|ref|YP_003714224.1| putative phage primase [Xenorhabdus nematophila ATCC 19061] gi|297631441|emb|CBJ92138.1| putative phage primase [Xenorhabdus nematophila ATCC 19061] Length = 804 Score = 143 bits (361), Expect = 8e-32, Method: Composition-based stats. Identities = 80/612 (13%), Positives = 173/612 (28%), Gaps = 64/612 (10%) Query: 203 RQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDE 262 Y + L G + V V + S W KQG Sbjct: 215 EGYATALTVSQLHHDGTVLAAIDESNLLNVAELVRTQWPESKIILAADNDWHKQGEKDKS 274 Query: 263 ENFNYKWDTFDFEEIGDTAKKRSTFT-SLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKK 321 ++ T + + A++ ++ + +K Sbjct: 275 GKLKKNVGKIAADKAAKAINGWVTLPPTEHKADWDDYRQHHGIEAAKQAFSNGLYQVGEK 334 Query: 322 G--HFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMK-----EDVFDLSEEPE 374 + KK NN+ + + + A ++ + E V+ + Sbjct: 335 KLMEAEAVVIHETKPKKATNNLAQMAAS--QRGALLVEHYKKIAVHAESEAVYHYNGTTW 392 Query: 375 DNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDG 434 + +++ R + + + +++ + S +G +G Sbjct: 393 ETVSDNELRRAMVAIFDQHDTPYSPNGINNAISAMKLQIPVIG-----EQRSDLIGFSNG 447 Query: 435 ILDLETGQKVKPTKELYITKSTGTPFVEGE-------PSQEFLDLVSGYFE-SEEVMDYF 486 + L T Q E ++ G F + + +F +S +E M+ Sbjct: 448 VYALSTQQFTPHQPEHWLMNHNGIEFTQPAIGENLSDHAPDFYRWLSHAAGQNENKMNRI 507 Query: 487 TRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEA 546 + M L Q FI + G GGSGKS + G + + + R Sbjct: 508 KAALFMILANRYDWQLFIEVTGEGGSGKSVFTYIATLLAGEHNTASGNMRALDEARGR-- 565 Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAK-IKQMTGGDCMTARLNYGNTYSESPASFT 605 + +G + I+ ++ + IK +TGGD + Y +S Sbjct: 566 -------YQFVGKSL--ITLPDQVKYVGEGAGIKAITGGDLIEVDGKYEKQFSTII-KAV 615 Query: 606 PFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFL-KG 662 N+ + + RR ++ PF+ P+ +D +K+ + L + Sbjct: 616 VLATNNEPMSFTERNGGIARRRVIFPFNIPVKESEKDPQLPEKISR-ELPVIIRHLLTEF 674 Query: 663 VKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENL------------WEE 710 +K L + + G+D + GE+ Sbjct: 675 ADQNKAKKLLQAQRDSSEALT--VKCGSDPLYRFCG-YLVSGEDTAGMKMGNKNISPRAP 731 Query: 711 SHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLK 770 L +Y + E + ++ ++ + ++ K+++ R KG Sbjct: 732 RMYLYHAYLSFMEAYGF--ERPLTLTKFGESMPKIM-------QEHRKDYQKVRTKKGYS 782 Query: 771 LKPAFESVDDNS 782 + Sbjct: 783 YHVELSEDAEEW 794 >gi|186896546|ref|YP_001873658.1| P4 alpha zinc-binding domain-containing protein [Yersinia pseudotuberculosis PB1/+] gi|186699572|gb|ACC90201.1| P4 alpha zinc-binding domain protein [Yersinia pseudotuberculosis PB1/+] Length = 763 Score = 143 bits (361), Expect = 1e-31, Method: Composition-based stats. Identities = 64/445 (14%), Positives = 128/445 (28%), Gaps = 52/445 (11%) Query: 361 SMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSD 420 + E V+ E D + R + ++ ++++ Sbjct: 332 AESETVYHYDGERWDKLPDGVLRRELVMIFNANDTPYSPAGIRNAIEAMKLQIPIMGEPP 391 Query: 421 LLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPS-------QEFLDLV 473 +G Q+G+ DL+ Q ++ F E +P F + Sbjct: 392 -----RHLIGFQNGVYDLKAKQFRPHRANDWLQHHNDIIFTEPQPDENLAHHAPHFTKWL 446 Query: 474 SGYFESE-EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532 + E M + M L Q F+ + G GGSGKS + G Q + Sbjct: 447 AHAANDELPKMARIKAALFMILSNRFDWQLFLEVTGEGGSGKSVFTYIATLLAGRQNTAS 506 Query: 533 AEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK-IKQMTGGDCMTARL 591 + + Q R + +G + I+ ++ + IK +TGGD + Sbjct: 507 GNMAALDQARGR---------AQFVGKSL--ITLPDQVKYVGEGAGIKAITGGDLVEIDG 555 Query: 592 NYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDAS-FAQKLETK 650 Y +S + N+ + RR ++ F+ P+ D + Sbjct: 556 KYEKQFSTLL-TAVVLATNNEPMSFTERQGGIARRRVIFAFNHPVKEADKDPLIGEKIAA 614 Query: 651 YTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE----- 705 + L + +A ++ D + ++GE Sbjct: 615 ELPVVIRCLLAEFADQDKARKLLLEQRDSREAMG-VKRDADPLYGFCAHIVELGEAVGMY 673 Query: 706 ------NLWEESHSLAKSYSEYREQELNYDRKRIST--RTVTLNLKQKGFIGGIKREKIE 757 + L +Y Y E + ++ + +K+ G Sbjct: 674 MGTLAISPRAPRIYLYHAYLAYMEAYGHQRSLSLTKFGKDFPKVMKEFG----------- 722 Query: 758 KEWKSKRIIKGLKLKPAFESVDDNS 782 E+K R KG + ++ Sbjct: 723 AEYKKARTDKGFRYNMDLSDTANDW 747 >gi|153949355|ref|YP_001399874.1| D5 family nucleoside triphosphatase [Yersinia pseudotuberculosis IP 31758] gi|152960850|gb|ABS48311.1| nucleoside triphosphatase, D5 family [Yersinia pseudotuberculosis IP 31758] Length = 763 Score = 143 bits (361), Expect = 1e-31, Method: Composition-based stats. Identities = 64/445 (14%), Positives = 128/445 (28%), Gaps = 52/445 (11%) Query: 361 SMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSD 420 + E V+ E D + R + ++ ++++ Sbjct: 332 AESETVYHYDGERWDKLPDGVLRRELVMIFNANDTPYSPAGIRNAIEAMKLQIPIMGEPP 391 Query: 421 LLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPS-------QEFLDLV 473 +G Q+G+ DL+ Q ++ F E +P F + Sbjct: 392 -----RHLIGFQNGVYDLKAKQFRPHRANDWLQHHNDIIFTEPQPDENLAHHAPHFTKWL 446 Query: 474 SGYFESE-EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532 + E M + M L Q F+ + G GGSGKS + G Q + Sbjct: 447 AHAANDELPKMARIKAALFMILSNRFDWQLFLEVTGEGGSGKSVFTYIATLLAGRQNTAS 506 Query: 533 AEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK-IKQMTGGDCMTARL 591 + + Q R + +G + I+ ++ + IK +TGGD + Sbjct: 507 GNMAALDQARGR---------AQFVGKSL--ITLPDQVKYVGEGAGIKAITGGDLVEIDG 555 Query: 592 NYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDAS-FAQKLETK 650 Y +S + N+ + RR ++ F+ P+ D + Sbjct: 556 KYEKQFSTLL-TAVVLATNNEPMSFTERQGGIARRRVIFAFNHPVKEADKDPLIGEKIAA 614 Query: 651 YTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE----- 705 + L + +A ++ D + ++GE Sbjct: 615 ELPVVIRCLLAEFADQDKARKLLLEQRDSREAMG-VKRDADPLYGFCAHIVELGEAVGMY 673 Query: 706 ------NLWEESHSLAKSYSEYREQELNYDRKRIST--RTVTLNLKQKGFIGGIKREKIE 757 + L +Y Y E + ++ + +K+ G Sbjct: 674 MGTLAISPRAPRIYLYHAYLAYMEAYGHQRSLSLTKFGKDFPKVMKEFG----------- 722 Query: 758 KEWKSKRIIKGLKLKPAFESVDDNS 782 E+K R KG + ++ Sbjct: 723 AEYKKARTDKGFRYNMDLSDTANDW 747 >gi|227113527|ref|ZP_03827183.1| hypothetical protein PcarbP_11212 [Pectobacterium carotovorum subsp. brasiliensis PBR1692] Length = 775 Score = 143 bits (360), Expect = 1e-31, Method: Composition-based stats. Identities = 68/441 (15%), Positives = 129/441 (29%), Gaps = 62/441 (14%) Query: 364 EDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLD 423 E F R + S S +L I + L Sbjct: 354 ETFFQYQNGAWKVLPYRLLSRDIAALFQKIHAPFTASGIGSVLDTL--KLIIPMQEKPL- 410 Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEG-------EPSQEFLDLVSGY 476 R +G ++G+ D +G+ +E ++ + + + F ++ Sbjct: 411 --RRLIGFRNGVFDTASGEFKPHRREHWLNTVNDVDYTPFKAGENLADNAPHFWRWLTRA 468 Query: 477 FE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535 + + + + M L Q F+ + G GGSGKS L + G A Sbjct: 469 AGSNTDKQERILAALFMVLANCYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNTTAATI 528 Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595 + I +R + ++G ++++ + + A IK +TGGD + Y + Sbjct: 529 NTIESSRERSS---------IIGFSLIVLPDQEKWSGDGAG-IKAITGGDAVMVDPKYRD 578 Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTL 653 YS V N + + RR ++I F + I RD +K+ Sbjct: 579 AYSTRIP-AVILAVNNSPMRFSDRSGGVSRRRVIIHFGETIPASERDPKLKEKI-RAELA 636 Query: 654 EAKKWFLKGVKAYISKGLDVDIPEVCLKAKE---------EERQGTDTYQAWIDDCCDIG 704 + +K P + E ++ D + G Sbjct: 637 VIVRHLMK----------RFADPNDARTLLQAQQHSAEALEIKRQADPLVDFCGYLLAHG 686 Query: 705 ENL-----------WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKR 753 + L +Y + E + +K IS L + + Sbjct: 687 DTTGLYMGNANITPRNPRKYLYHAYLSFMESHGH--QKPISLTAFGKVLPN--MMSEYGQ 742 Query: 754 EKIEKEWKSKRIIKGLKLKPA 774 ++ I L+LK Sbjct: 743 TYLKGRTNQG-IQTNLELKDE 762 >gi|323131092|gb|ADX18522.1| bacteriophage P4 DNA primase [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] Length = 777 Score = 143 bits (360), Expect = 1e-31, Method: Composition-based stats. Identities = 59/371 (15%), Positives = 108/371 (29%), Gaps = 60/371 (16%) Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478 R +G ++G+LD TG K ++ F + F + Sbjct: 411 RRLIGFRNGVLDTATGTFSPHHKSHWLRTLCDVDFTPPVEGETLETHAPHFWRWLDRAAG 470 Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537 E D + M L Q F+ + G GGSGKS L + G +A Sbjct: 471 GKPEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNATSATIET 530 Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597 + R L+G ++ + + + A +K +TGGD ++ Y + Y Sbjct: 531 LESPR---------ERAALIGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYKDAY 580 Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEA 655 S V N + + RR +++ F + I RD K+ Sbjct: 581 STHIP-AVILAVNNNPMRFTDRSGGVSRRRVILHFPEQIAPEERDPQLRDKIAR-ELAVI 638 Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGEN 706 + ++ P + + ++ D + + + Sbjct: 639 VRQLMQ----------KFSDPMTARTLLQSQQNSDEALSIKRDADPAFDFCG-YLEALPD 687 Query: 707 ------------LWEESHSLAKSYSEYREQELNYDRKRISTRTVTL----NLKQKGFIGG 750 + L +Y Y E R +S LK+ G Sbjct: 688 PDGMYIGNANIIPRQPRLYLYHAYLAYMEAHGY--RNTLSLTMFGKGLPAMLKEYGLSYE 745 Query: 751 IKREKIEKEWK 761 +R+ + Sbjct: 746 KRRKNQGIQTN 756 >gi|301159308|emb|CBW18823.1| bacteriophage P4 DNA primase [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] Length = 794 Score = 143 bits (360), Expect = 1e-31, Method: Composition-based stats. Identities = 59/371 (15%), Positives = 108/371 (29%), Gaps = 60/371 (16%) Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478 R +G ++G+LD TG K ++ F + F + Sbjct: 428 RRLIGFRNGVLDTATGTFSPHHKSHWLRTLCDVDFTPPVEGETLETHAPHFWRWLDRAAG 487 Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537 E D + M L Q F+ + G GGSGKS L + G +A Sbjct: 488 GKPEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNATSATIET 547 Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597 + R L+G ++ + + + A +K +TGGD ++ Y + Y Sbjct: 548 LESPR---------ERAALIGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYKDAY 597 Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEA 655 S V N + + RR +++ F + I RD K+ Sbjct: 598 STHIP-AVILAVNNNPMRFTDRSGGVSRRRVILHFPEQIAPEERDPQLRDKIAR-ELAVI 655 Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGEN 706 + ++ P + + ++ D + + + Sbjct: 656 VRQLMQ----------KFSDPMTARTLLQSQQNSDEALSIKRDADPAFDFCG-YLEALPD 704 Query: 707 ------------LWEESHSLAKSYSEYREQELNYDRKRISTRTVTL----NLKQKGFIGG 750 + L +Y Y E R +S LK+ G Sbjct: 705 PDGMYIGNANIIPRQPRLYLYHAYLAYMEAHGY--RNTLSLTMFGKGLPAMLKEYGLSYE 762 Query: 751 IKREKIEKEWK 761 +R+ + Sbjct: 763 KRRKNQGIQTN 773 >gi|301022218|ref|ZP_07186133.1| nucleoside triphosphatase, D5 family [Escherichia coli MS 69-1] gi|300397631|gb|EFJ81169.1| nucleoside triphosphatase, D5 family [Escherichia coli MS 69-1] Length = 605 Score = 143 bits (360), Expect = 1e-31, Method: Composition-based stats. Identities = 73/541 (13%), Positives = 162/541 (29%), Gaps = 86/541 (15%) Query: 267 YKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYN----KAMFSIYKKG 322 W + E G+ A+K+ ++ + + + + + Y Sbjct: 112 ENWREYLERERGELAEKKKVVELPVKKKERVKDDNASSLALNQMGASQRGEVLLAHYGGE 171 Query: 323 HFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKS 382 + D + V+ ++ + + +D Sbjct: 172 LAI---------HADSDTVHHYNGVVWEP---------------------VQDKELQRAM 201 Query: 383 PRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQ 442 + + + + S + SL +++ +G +G+ D TG Sbjct: 202 AQIFIDAEISYSQNAIKSAVDTMKLSLPVMG---------NTARNLIGFSNGVFDTRTGN 252 Query: 443 KVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVS-GYFESEEVMDYFTRCVGMAL 494 + K ++ ++ PF + F + E++ D + M L Sbjct: 253 FREHNKNDWLLIASELPFSPPAEGETLATHAPNFWKWLRRSVAENDRKADRVLAALFMVL 312 Query: 495 LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLI 554 Q FI + G GGSGKS + + G ++A + R Sbjct: 313 ANRYDWQLFIEVTGPGGSGKSVMAEICTMLAGKANTVSASMKALEDAR---------ERA 363 Query: 555 RLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHL 614 ++G ++I+ + A IK +TGGD + + YS + + N + Sbjct: 364 LVVGFSLIIMPDMTRYAGDGAG-IKAITGGDKVAIDPKHKAPYSTRIPAVVLAV-NNNAM 421 Query: 615 FVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLD 672 + RR ++ F + + RD A+K+E + L Sbjct: 422 SFSDRSGGISRRRVIFNFSEVVPENERDPMLAEKIE-GELAVVIRHLLTRFANQDEARRL 480 Query: 673 VDIPEVCLKAKEEERQGTDTYQAW--------IDDCCDIGENL---WEESHSLAKSYSEY 721 + + +A ++ D+ + + D +G + L +Y Y Sbjct: 481 LYEQQKSEEALAI-KREGDSLVDFCGYLMASVMCDGLLVGNAEIVPFSPRRYLYHAYLAY 539 Query: 722 REQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDN 781 K ++ ++ G + RE ++++ K GL+ ++ Sbjct: 540 MRAHGFG--KPVTLTRFGKDMP--GAMAEYGREYMKRKTKH-----GLRSNVTLTEESED 590 Query: 782 S 782 Sbjct: 591 W 591 >gi|21910875|ref|NP_665143.1| putative DNA primase - phage associated [Streptococcus pyogenes MGAS315] gi|28876421|ref|NP_795620.1| putative DNA primase [Streptococcus pyogenes phage 315.5] gi|21905081|gb|AAM79946.1| putative DNA primase - phage-associated [Streptococcus pyogenes MGAS315] Length = 292 Score = 143 bits (359), Expect = 1e-31, Method: Composition-based stats. Identities = 43/266 (16%), Positives = 89/266 (33%), Gaps = 16/266 (6%) Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549 + +L G ++ I G G GK T +I G + V + + + Sbjct: 1 MAASLNGNYSYRKSIWFVGDGNDGKGTFQQMISNLVGFKNVAPLKLNQFSE--------- 51 Query: 550 NPSLIRLMGSRIVIISETNENDEINA-AKIKQMTGGDCMTARLNYGNTYSESPASFTPFI 608 L + G ++I + ++ + + G+ ++ N Y T Sbjct: 52 RFGLAIIEGKTVIIGDDVQAGIYVDESSNFNSVVTGEPVSIEKKGENPYMAI-FKKTVIQ 110 Query: 609 VPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYIS 668 N +N + +RR I+IPF K ++ + ++A K + E ++ L K+ Sbjct: 111 STNGMPVFKNKSNGTYRRIIIIPFKKTFSSAEDNWAIKDDYINRKEVLEYVL--WKSINL 168 Query: 669 KGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNY 728 P+V E ++ +T ++++ + E+ L Y + + Sbjct: 169 DFDKFYEPKVTQDRMREFKEENNTILKFLNEYLEDVESTRLPVRFLWDVYQSWCTENGVT 228 Query: 729 DRKRISTRTVTLNLKQKGFIGGIKRE 754 K L G K + Sbjct: 229 KPK---KSNFEKELAINLPDGWEKTK 251 >gi|323935654|gb|EGB31971.1| phage/plasmid primase [Escherichia coli E1520] Length = 591 Score = 143 bits (359), Expect = 2e-31, Method: Composition-based stats. Identities = 72/541 (13%), Positives = 161/541 (29%), Gaps = 86/541 (15%) Query: 267 YKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYN----KAMFSIYKKG 322 W + E + A+K+ ++ + + + + + Y Sbjct: 98 ENWREYLERERAELAEKKKVVELPVKKKERVKDDNASSLALNQMGASQRGEVLLAHYGGE 157 Query: 323 HFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKS 382 + D + V+ ++ + + +D Sbjct: 158 LAI---------HADSDTVHHYNGVVWEP---------------------VQDKELQRAM 187 Query: 383 PRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQ 442 + + + + S + SL +++ +G +G+ D TG Sbjct: 188 AQIFIDAEISYSQNAIKSAVDTMKLSLPVMG---------NTARNLIGFSNGVFDTRTGN 238 Query: 443 KVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVS-GYFESEEVMDYFTRCVGMAL 494 + K ++ ++ PF + F + E++ D + M L Sbjct: 239 FREHNKNDWLLIASELPFSPPAEGETLATHAPNFWKWLRRSVAENDRKADRVLAALFMVL 298 Query: 495 LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLI 554 Q FI + G GGSGKS + + G ++A + R Sbjct: 299 ANRYDWQLFIEVTGPGGSGKSVMAEICTMLAGKANTVSASMKALEDAR---------ERA 349 Query: 555 RLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHL 614 ++G ++I+ + A IK +TGGD + + YS + + N + Sbjct: 350 LVVGFSLIIMPDMTRYAGDGAG-IKAITGGDKVAIDPKHKAPYSTRIPAVVLAV-NNNAM 407 Query: 615 FVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLD 672 + RR ++ F + + RD A+K+E + L Sbjct: 408 SFSDRSGGISRRRVIFNFSEVVPENERDPMLAEKIE-GELAVVIRHLLTRFADQDEARRL 466 Query: 673 VDIPEVCLKAKEEERQGTDTYQAW--------IDDCCDIGENL---WEESHSLAKSYSEY 721 + + +A ++ D+ + + D +G + L +Y Y Sbjct: 467 LYEQQKSEEALAI-KREGDSLVDFCGYLMASVMCDGLLVGNAEIVPFSPRRYLYHAYLAY 525 Query: 722 REQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDN 781 K ++ ++ G + RE ++++ K GL+ ++ Sbjct: 526 MRAHGFG--KPVTLTRFGKDMP--GAMAEYGREYMKRKTKH-----GLRSNVTLTEESED 576 Query: 782 S 782 Sbjct: 577 W 577 >gi|51597435|ref|YP_071626.1| phage primase [Yersinia pseudotuberculosis IP 32953] gi|51590717|emb|CAH22360.1| putative phage primase [Yersinia pseudotuberculosis IP 32953] Length = 763 Score = 143 bits (359), Expect = 2e-31, Method: Composition-based stats. Identities = 64/446 (14%), Positives = 134/446 (30%), Gaps = 54/446 (12%) Query: 361 SMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSD 420 + E V+ E D + R + ++ ++++ Sbjct: 332 AESETVYHYDGERWDKLPDGVLRRELVMIFNANDTPYSPAGIRNAIEAMKLQIPIMGEPP 391 Query: 421 LLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPS-------QEFLDLV 473 +G Q+G+ DL+ Q ++ F E +P F + Sbjct: 392 -----RHLIGFQNGVYDLKAKQFRPHRANDWLQHHNDIIFTEPQPDENLAHHAPHFTKWL 446 Query: 474 SGYFESE-EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532 + E M + M L Q F+ + G GGSGKS + G Q + Sbjct: 447 AHAANDELPKMARIKAALFMILSNRFDWQLFLEVTGEGGSGKSVFTYIATLLAGRQNTAS 506 Query: 533 AEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK-IKQMTGGDCMTARL 591 + + Q R + +G + I+ ++ + IK +TGGD + Sbjct: 507 GNMAALDQARGR---------AQFVGKSL--ITLPDQVKYVGEGAGIKAITGGDLVEIDG 555 Query: 592 NYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDAS-FAQKLETK 650 Y +S + N+ + RR ++ F+ P+ D + Sbjct: 556 KYEKQFSTLL-TAVVLATNNEPMSFTERQGGIARRRVIFAFNHPVKEADKDPLIGEKIAA 614 Query: 651 YTLEAKK-WFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE---- 705 + ++ ++ L ++ + +A ++ D + ++GE Sbjct: 615 ELPVVIRCLLVEFADQDKARKLLLEQRDS-REAMG-VKRDADPLYGFCAHIVELGEAVGM 672 Query: 706 -------NLWEESHSLAKSYSEYREQELNYDRKRIST--RTVTLNLKQKGFIGGIKREKI 756 + L +Y Y E + ++ + +K+ G Sbjct: 673 YMGTLAISPRAPRIYLYHAYLAYMEAYGHQRSLSLTKFGKDFPKVMKEFG---------- 722 Query: 757 EKEWKSKRIIKGLKLKPAFESVDDNS 782 E+K R KG + ++ Sbjct: 723 -AEYKKARTDKGFRYNMDLSDTANDW 747 >gi|320177604|gb|EFW52594.1| DNA primase , phage-associated [Shigella boydii ATCC 9905] Length = 777 Score = 143 bits (359), Expect = 2e-31, Method: Composition-based stats. Identities = 66/433 (15%), Positives = 122/433 (28%), Gaps = 65/433 (15%) Query: 364 EDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLD 423 + + S R R + K S ++L+ I + Sbjct: 354 QLLSRYESGAWKVISQSDFARDVAALFQRLGAPFSSGKIASLVETLK-----LIVPQQQN 408 Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGY 476 S +G ++G+LD TG KE ++ F + F + Sbjct: 409 PSRHLIGFRNGVLDTRTGLFSPHCKENWLRTLCEVDFTPPVKGETLETHAPAFWRWLDRA 468 Query: 477 FE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535 D + M L Q F+ + G GGSGKS L + G+ +A Sbjct: 469 AGHKPAKRDIILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATMLAGDDNATSATI 528 Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595 + R L+G ++ + + + A +K +TGGD ++ Y N Sbjct: 529 ETLESPR---------ERAALIGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYQN 578 Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTL 653 YS V N + + RR +++ F + I RD K+ Sbjct: 579 AYSTHIP-AVILAVNNNPMRFTDRSGGVSRRRVILHFPEQIAPEERDPQLKDKIAR-ELA 636 Query: 654 EAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIG 704 + ++ P + + ++ D + + Sbjct: 637 VIVRQLMQ----------RFSDPMSARTLLQSQQNSDEALTIKRDADPAFDFCG-YLEAL 685 Query: 705 ENL------------WEESHSLAKSYSEYREQELNYDRKRISTRTVTL----NLKQKGFI 748 + + L +Y Y E + +S LK+ G Sbjct: 686 PDTNGMFMGNANIVPRQPRTYLYHAYLVYMEANGF--KNTLSLTMFGKGLPVMLKEYGLN 743 Query: 749 GGIKREKIEKEWK 761 +R + Sbjct: 744 YEKRRTNQGMQTN 756 >gi|170016448|ref|YP_001727367.1| DNA primase [Leuconostoc citreum KM20] gi|169803305|gb|ACA81923.1| DNA primase [Leuconostoc citreum KM20] Length = 467 Score = 142 bits (358), Expect = 2e-31, Method: Composition-based stats. Identities = 60/475 (12%), Positives = 139/475 (29%), Gaps = 60/475 (12%) Query: 284 RSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYI 343 S + G++ + R ++ M + + + + Y+ Sbjct: 17 PSWLDVQYNEAGEINKTTVNVERLAEYVA--METHFYTDN-------------NNLAGYL 61 Query: 344 WSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAK 403 ++ K ++ ++ V L + + + + K Sbjct: 62 FNGQYWKRYKNVKQADNALSSRVATL--------------------LKQHKKLTSAKQVK 101 Query: 404 STAQSLEAGSIFSITSD-LLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVE 462 + + ++ + + +G LD+ T + + + P + Sbjct: 102 NIVDLIRVITVKDVADYIDFTDKPYMVSFTNGTLDMRTLEIKPNAPQYHALGGLDYPVSD 161 Query: 463 GE-PSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGN-KAQRFIHIRGVGGSGKSTLMNL 520 + P+ + + + E + + +G Q F+ + G GG+GK + + Sbjct: 162 KDLPTPKTDEFFTRLLGD-ENAELLYKFIGYGFKRNYLPFQNFVILYGKGGNGKGSALTY 220 Query: 521 IKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIK- 579 I + V L+G I S+ N +K Sbjct: 221 IGQQIYSGNVSELSLQAFGDKFKTVG---------LVGKYANIGSDIPSYYMPNTENLKL 271 Query: 580 QMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIP-----FDK 634 ++G + +S T F N ++ D RR +V+ F Sbjct: 272 AVSGKERFELESKGVQAFS-IVNYATLFFSANDLPNIK-RDSGLDRRPLVVTTQGKGFTT 329 Query: 635 PIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQ 694 D F + + +K ++IPE KA E + D Sbjct: 330 KDGKSDF-FDEAELLDERPAFTRKVIKLFMDAERAK-TLNIPENVQKATAEWLKSADIVS 387 Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIG 749 W+D+ + ++ + + + +S R+ E ++ I+ T ++ G Sbjct: 388 QWLDEHTEEAKDRRPTAKYMYQQFS--RDVEDMGMKETINRNTFYSRMEHLGIKS 440 >gi|168464122|ref|ZP_02698039.1| bacteriophage P4 DNA primase [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|195633563|gb|EDX51977.1| bacteriophage P4 DNA primase [Salmonella enterica subsp. enterica serovar Newport str. SL317] Length = 777 Score = 142 bits (358), Expect = 2e-31, Method: Composition-based stats. Identities = 58/367 (15%), Positives = 109/367 (29%), Gaps = 58/367 (15%) Query: 429 LGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE-SE 480 +G ++G+LD TG K ++ F + F + + Sbjct: 414 IGFRNGVLDTATGTFSPHHKSHWLRTLCDVDFTPPVEGEMLETHAPNFWRWLDRAAGKNP 473 Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540 + D + M L Q F+ + G GGSGKS L + G +A + Sbjct: 474 QKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNATSATIETLES 533 Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600 R L+G ++ + + + A +K +TGGD ++ Y + YS Sbjct: 534 PR---------ERAALIGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYKDAYSTH 583 Query: 601 PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEAKKW 658 V N + + RR +++ F + I RD K+ + Sbjct: 584 IP-AVILAVNNNPMRFTDRSGGVSRRRVILHFPEQIAPEERDPQLKNKIAR-ELAVIVRQ 641 Query: 659 FLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWID--DCCDIGENL 707 ++ P + + ++ D + + E + Sbjct: 642 LMQ----------KFSDPMTARALLQSQQNSDEALSIKRDADPTFDFCGYLEALPEPEGM 691 Query: 708 WE---------ESHSLAKSYSEYREQELNYDRKRISTRTVTL----NLKQKGFIGGIKRE 754 + L +Y Y E R +S LK+ G +R+ Sbjct: 692 YIGNANIIPRQPRLYLYHAYLAYMEAHGY--RNTLSLTMFGKGLPAMLKEYGLSYEKRRK 749 Query: 755 KIEKEWK 761 + Sbjct: 750 NQGIQTN 756 >gi|313576893|gb|ADR67065.1| bacteriophage P4 DNA primase [Klebsiella pneumoniae subsp. pneumoniae] Length = 777 Score = 142 bits (358), Expect = 2e-31, Method: Composition-based stats. Identities = 61/372 (16%), Positives = 113/372 (30%), Gaps = 62/372 (16%) Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478 R +G ++G+LD +G +K ++ F + F + Sbjct: 411 RRLIGFRNGVLDTSSGIFSPHSKSHWLRTLCDVDFTPPVEGETLETHAPNFWRWLDRAAS 470 Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537 + D + M L Q F+ + G GGSGKS L + G +A+ Sbjct: 471 RNPTKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNATSADIDT 530 Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597 + R L+G ++ + + + A +K +TGGD ++ Y N Y Sbjct: 531 LEDPRKR---------ASLIGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYQNPY 580 Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEA 655 S V N + + RR ++I F + I RD K+ Sbjct: 581 STHIP-AVILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPEERDPQLRDKIAR-ELAVI 638 Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGEN 706 + ++ P + + ++ D + C E Sbjct: 639 VRQLMQ----------QFSDPMSARALLQSQQNSDEALSIKRDADPTFDF----CGYLEA 684 Query: 707 LWEESH---------------SLAKSYSEYREQELNYDRKRIST--RTVTLNLKQKGFIG 749 L E L +Y Y E + ++ + ++ LK+ G Sbjct: 685 LPEPDGMYMGNANIIPRQPRLYLYHAYLVYMEAHGYRNALSLTMFGKGLSAMLKEYGLNY 744 Query: 750 GIKREKIEKEWK 761 +R + Sbjct: 745 DKRRTNQGMQTN 756 >gi|301169147|emb|CBW28744.1| phage phi-r73 primase-like protein [Haemophilus influenzae 10810] Length = 589 Score = 142 bits (358), Expect = 2e-31, Method: Composition-based stats. Identities = 59/422 (13%), Positives = 135/422 (31%), Gaps = 48/422 (11%) Query: 364 EDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLD 423 +++ + + +N + +S + ++L+A Sbjct: 177 REIYAYDGKTWNKQENDDLEEKAVKFLDENEFNYSDSTIERLIKTLKAQLPRMGEMSN-- 234 Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPS-QEFLDLVSGYF-ESEE 481 + ++G+L+ T + ++ ++T + + F +S +++ Sbjct: 235 ---DLIAFENGVLNRNTMEFESHNRQNWLTSCIPHKYDKQATDTPLFDKWLSFVSDGNKD 291 Query: 482 VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQN 541 + L Q F I G GGSGKS ++ G + ++ Sbjct: 292 KARNILAVLYAILTNRYNWQMFFEITGKGGSGKSVFASIATLLAGVKNTASSNLEKFDDE 351 Query: 542 RPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESP 601 R L L +++ E ++ + +K +TGGD + R NY + + + Sbjct: 352 RG---------LSGLENKTLILCPEQSKYAGDGSG-LKSITGGDTVRVRYNYQDPF-DVK 400 Query: 602 ASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWF 659 + ++ N+ RR ++ F K + RD F K+ + Sbjct: 401 ITALVMLINNRPCSFTERSGGVDRRRVIFDFKKIVPEDERDPHFMDKITL-EVGGIIRKV 459 Query: 660 LKGVKAYISKGLDVDIPEVCLKAKEEERQG------TDTYQAWI-----DDCCD------ 702 D + + LKA+ E ++ +D + + D Sbjct: 460 FDSFH-------DPNDAKKALKAQMESQEALEVKKLSDPLTDFFGYFYTTEQTDGLFIGV 512 Query: 703 IGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKS 762 L + L +Y Y + + + + ++Q G K + +++ K+ Sbjct: 513 TNMGLDKIRTHLYPAYLAYTKA---MNIGELGLNNFVIGVEQALKQNGNKHDFMKRHTKT 569 Query: 763 KR 764 R Sbjct: 570 GR 571 >gi|309796709|ref|ZP_07691114.1| nucleoside triphosphatase, D5 family [Escherichia coli MS 145-7] gi|308119721|gb|EFO56983.1| nucleoside triphosphatase, D5 family [Escherichia coli MS 145-7] Length = 774 Score = 142 bits (357), Expect = 2e-31, Method: Composition-based stats. Identities = 66/431 (15%), Positives = 123/431 (28%), Gaps = 61/431 (14%) Query: 364 EDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLD 423 + + S R R + K S ++L+ I + Sbjct: 351 QLLSRYESGAWKVISQSDFARDVAALFQRLGAPFSSGKIASLVETLK-----LIVPQQQN 405 Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGY 476 + +G ++G+LD TG KE ++ F + F + Sbjct: 406 PARHLIGFRNGVLDTRTGLFSPHCKENWLRTVCEVDFTPPVKGETLETHAPAFWRWLDRA 465 Query: 477 FE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535 D + M L Q F+ + G GGSGKS L + G +A Sbjct: 466 AGHKPAKRDIILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNATSATI 525 Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595 + R L+G ++ + + + A +K +TGGD ++ Y N Sbjct: 526 ETLESPR---------ERAALIGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYQN 575 Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTL 653 YS V N + + RR +++ F + I RD K+ Sbjct: 576 AYSTHIP-AVILAVNNNPMRFTDRSGGVSRRRVILHFPEQIAPEERDPQLKDKIAR-ELA 633 Query: 654 EAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIG 704 + ++ P + + ++ D + + Sbjct: 634 VIVRQLMQ----------RFSDPMSARTLLQSQQNSDEALTIKRDADPAFDFCG-YLEAL 682 Query: 705 ENL------------WEESHSLAKSYSEYREQEL--NYDRKRISTRTVTLNLKQKGFIGG 750 + + L +Y Y E N + + + L LK+ G Sbjct: 683 PDTNGMFMGNANIVPRQPRTYLYHAYLVYMEANGYKNTLSLTMFGKGLPLMLKEYGLQYE 742 Query: 751 IKREKIEKEWK 761 +R + Sbjct: 743 KRRTNQGMQTN 753 >gi|227358324|ref|ZP_03842665.1| primase [Proteus mirabilis ATCC 29906] gi|227161660|gb|EEI46697.1| primase [Proteus mirabilis ATCC 29906] Length = 775 Score = 142 bits (357), Expect = 3e-31, Method: Composition-based stats. Identities = 66/425 (15%), Positives = 130/425 (30%), Gaps = 43/425 (10%) Query: 363 KEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLL 422 E V+ + + +S R + + K+ +L+ Sbjct: 352 SEMVYHYVDGVWNKVSDSDLQRAMVAIFDEYETPYSPTGVKNAIGALKLQIPVLG----- 406 Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPS-------QEFLDLVSG 475 + +G +G+ DL T Q E ++ G F E + F +S Sbjct: 407 EQKRELIGFSNGVYDLSTQQFKPHAPENWLLNHNGIVFTAPESNENLKQHAPSFYKWLSH 466 Query: 476 YFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534 EE M+ + M L Q FI + G GGSGKS ++ G + Sbjct: 467 SAGNDEEKMNRINAGLFMILANRYDWQLFIEVTGEGGSGKSVFTSIATLLAGAHNTASGN 526 Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK-IKQMTGGDCMTARLNY 593 + + R + +G + I+ ++ + IK +TGGD + Y Sbjct: 527 MKALDEARGR---------YQFVGKSL--ITLPDQVKYVGEGAGIKAITGGDLIEVDGKY 575 Query: 594 GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDAS-FAQKLETKYT 652 +S N+ + + RR ++ F+ P+ D + +K Sbjct: 576 EKQFSTII-KAVVLATNNEPMSFTERNGGIARRRVIFSFNTPVKENDKDPLLPEKISKEL 634 Query: 653 LEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENL----- 707 + LK L + +A + +D ++ +GE L Sbjct: 635 PVIIRHLLKLFTCQDKAKLLLQEQRDSGEAL-AVKSNSDPLYSFCAYLVSLGEELGMKMG 693 Query: 708 ------WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWK 761 L +Y + E + ++ +L + + K++ + + K Sbjct: 694 NKNIYPRAPRIYLYHAYLSFMEAYGF--DRPLTLTKFGDSLPK--VMQEYKKDYRKFKTK 749 Query: 762 SKRII 766 Sbjct: 750 RGYYY 754 >gi|145632692|ref|ZP_01788426.1| phage DNA primase-like protein [Haemophilus influenzae 3655] gi|144986887|gb|EDJ93439.1| phage DNA primase-like protein [Haemophilus influenzae 3655] Length = 589 Score = 142 bits (357), Expect = 3e-31, Method: Composition-based stats. Identities = 59/425 (13%), Positives = 134/425 (31%), Gaps = 54/425 (12%) Query: 364 EDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLD 423 +++ + + +N + +S + ++L+A Sbjct: 177 REIYAYDGKTWNKQENDDLEEKAVKFLDENEFNYSDSTIERLIKTLKAQLPRMGEMSK-- 234 Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPS-QEFLDLVSGYF-ESEE 481 + ++G+L+ T + ++ ++T + + F +S ++E Sbjct: 235 ---DLIAFENGVLNRNTMEFESHNRQNWLTSCIPHKYDKHVTDTPHFDKWLSFVSDGNKE 291 Query: 482 VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQN 541 + L Q F I G GGSGKS ++ G + ++ Sbjct: 292 KARNILAVLYAILTNRYNWQMFFEITGKGGSGKSVFASIATLLAGVKNTASSNLEKFDDE 351 Query: 542 RPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESP 601 R L L +++ E ++ +++ +K +TGGD + R NY + + + Sbjct: 352 RG---------LSGLENKTLILCPEQSKYAG-DSSGLKSITGGDTVRVRYNYQDPF-DVK 400 Query: 602 ASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWF 659 + ++ N+ RR ++ F K + RD F K+ + Sbjct: 401 ITALVMLINNRPCSFTERSGGVDRRRVIFDFKKIVPEDERDPHFMDKITL-EVGGIIRKV 459 Query: 660 LKGVKAYISKGLDVDIPEVCLKAKE---------EERQGTDTYQAWI-----DDCCD--- 702 P KA + E ++ +D + + D Sbjct: 460 FD----------SFPDPNDAKKALKAQMESQEALEVKKLSDPLTDFFGYFYTTEQTDGLF 509 Query: 703 ---IGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKE 759 L + L +Y Y + + + + ++Q G K + +++ Sbjct: 510 IGVTNMGLDKIRTHLYPAYLAYTKA---MNIGELGLNNFVIGVEQALKQNGNKHDFMKRH 566 Query: 760 WKSKR 764 K+ R Sbjct: 567 TKTGR 571 >gi|328543326|ref|YP_004303435.1| Gp33 [polymorphum gilvum SL003B-26A1] gi|326413072|gb|ADZ70135.1| Gp33 [Polymorphum gilvum SL003B-26A1] Length = 779 Score = 141 bits (356), Expect = 3e-31, Method: Composition-based stats. Identities = 120/788 (15%), Positives = 222/788 (28%), Gaps = 110/788 (13%) Query: 8 EQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDK--LPACGFGFVCGVGEQPL 65 E + G +LI + K+P G L+ E+ ++ L G + Sbjct: 50 EALDAHVEAGHELIAVD--GKKPVASGWRTALPLAREQAERRLLAGRNVGVRLRDVD--- 104 Query: 66 YAFDIDSKD-EKTANTFKDTFEI--LHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTEST 122 D+D ++ + + L P V G K + FR E + Sbjct: 105 LVLDVDPRNFAENDDPLTRLVRDFDLRDAPFVVTGGGGK-HLYFRKPAEVAVVNE--LDA 161 Query: 123 QGHLDILGCGQYFVAYNI-HPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEIT 181 ++ G+ VA HP+T + Y R ++ + P SE+ + + K Sbjct: 162 YRGVEFKSLGRQVVAAGSVHPETGRLYALDDDVLRMELSEAPEASEKLLRAIEK------ 215 Query: 182 VPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETR 241 S + N + + T ++ LS YNG HDEW+ V+MA HH T Sbjct: 216 -----------LSVGASENRSGEITAEQLARLLSKLDVMAYNGRHDEWLKVMMASHHGTA 264 Query: 242 GSSKGKEIARRWSKQGSTY--DEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIP 299 G +G + WS Y DE +W++ D G ++ +L Sbjct: 265 G--EGVDEFVAWSTSDPDYAGDEARIRERWNSLDTRRGG--VTLKTLLRALVDAGNGAWI 320 Query: 300 KGLLASRFSDAYNKAM-FSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNF 358 + +L S D ++ L + + + + T + Sbjct: 321 EEVLRSAPEDDFDDVPEMPRSMGDLALARMNRNHFTVLHGGKYLVGRESK-HPTLGHVAV 379 Query: 359 LVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSIT 418 + + ++ K Sbjct: 380 DWFSAGAISAHFDSRTVEVEDGKQKALG-------------------------------- 407 Query: 419 SDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF- 477 R + + D T + + G L+ Sbjct: 408 -SWWVKHPRRRQYEGVVFDPSPK--RTHTSLYNLWRGWAVEPKAG-DWSLLKRLLKDVLC 463 Query: 478 -ESEEVMDYFTRCVGMALL-GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535 E DY R + A+ + +G G+GK T +K G A+A Sbjct: 464 RGDAESFDYVLRWAAFMVQKPDMPAEVALVFKGSKGAGKGTFARALKSLAGMHGKQVAQA 523 Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETN-ENDEINAAKIKQMTGGDCMTARLNYG 594 + LM ++ + E D A +K + ++ G Sbjct: 524 EHFVGRFNE----------HLMDCVLLFVDEGYWAGDPKAAGALKNLITEPVLSFEPK-G 572 Query: 595 NTYSESPASFTPFIVPNKHLFVR-NPDDAWWRRYIVIPFDKPIANR-DASFAQKLETKYT 652 P I N+ V + D+ RR+ V D R + F L + Sbjct: 573 RPIVSGPNMLHVVIASNEDWIVPASADE---RRFAVFEADTEARKRLPSGFFDTLNAQMA 629 Query: 653 LEAKKWFLKGVKAYISKGLDV--DIP---EVCLKAKEEERQGTDTYQAWI-------DDC 700 L ++ IP + + + R+ W D Sbjct: 630 NGGLAAMLHDLQNLDLGDWHPRMAIPNTQALIEQKVQAFRRE--PLSFWWFRTLEAGGDG 687 Query: 701 CDIGENLW-EESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKE 759 + E++W + + E E+ K ++ F+ + + K+ Sbjct: 688 LTLDEDVWAVRQVDVGPNGKEELVAEVCAVAKGMNRTAQFSKKAVAQFLKSVGVDVNAKD 747 Query: 760 WKSKRIIK 767 + R+ + Sbjct: 748 SRGVRVWR 755 >gi|331673076|ref|ZP_08373850.1| bacteriophage P4 DNA primase [Escherichia coli TA280] gi|331069763|gb|EGI41144.1| bacteriophage P4 DNA primase [Escherichia coli TA280] Length = 610 Score = 141 bits (356), Expect = 3e-31, Method: Composition-based stats. Identities = 72/541 (13%), Positives = 161/541 (29%), Gaps = 86/541 (15%) Query: 267 YKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYN----KAMFSIYKKG 322 W + E + A+K+ ++ + + + + + Y Sbjct: 117 ENWREYLERERAELAEKKKVVELPVKKKERVKDDNASSLALNQMGASQRGEVLLAHYGGE 176 Query: 323 HFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKS 382 + D + V+ ++ + + +D Sbjct: 177 LAI---------HADSDTVHHYNGVVWEP---------------------VQDKELQRAM 206 Query: 383 PRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQ 442 + + + + S + SL +++ +G +G+ D TG Sbjct: 207 AQIFIDAEISYSQNAIKSAVDTMKLSLPVMG---------NTARNLIGFSNGVFDTRTGN 257 Query: 443 KVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVS-GYFESEEVMDYFTRCVGMAL 494 + K ++ ++ PF + F + E++ D + M L Sbjct: 258 FREHNKNDWLLIASELPFSPPAEGETLATHAPNFWKWLRRSVAENDRKADRVLAALFMVL 317 Query: 495 LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLI 554 Q FI + G GGSGKS + + G ++A + R Sbjct: 318 ANRYDWQLFIEVTGPGGSGKSVMAEICTMLAGKANTVSASMKALEDAR---------ERA 368 Query: 555 RLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHL 614 ++G ++I+ + A IK +TGGD + + YS + + N + Sbjct: 369 LVVGFSLIIMPDMTRYAGDGAG-IKAITGGDKVAIDPKHKAPYSTRIPAVVLAV-NNNAM 426 Query: 615 FVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLD 672 + RR ++ F + + RD A+K+E + L Sbjct: 427 SFSDRSGGISRRRVIFNFSEVVPENERDPMLAEKIE-GELAVVIRHLLTRFADQDEARRL 485 Query: 673 VDIPEVCLKAKEEERQGTDTYQAW--------IDDCCDIGENL---WEESHSLAKSYSEY 721 + + +A ++ D+ + + D +G + L +Y Y Sbjct: 486 LYEQQKSEEALAI-KREGDSLVDFCGYLMASVMCDGLLVGNAEIVPFSPRRYLYHAYLAY 544 Query: 722 REQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDN 781 K ++ ++ G + RE ++++ K GL+ ++ Sbjct: 545 MRAHGFG--KPVTLTRFGKDMP--GAMAEYGREYMKRKTKH-----GLRSNVTLTEESED 595 Query: 782 S 782 Sbjct: 596 W 596 >gi|323977714|gb|EGB72800.1| phage/plasmid primase [Escherichia coli TW10509] Length = 605 Score = 141 bits (356), Expect = 3e-31, Method: Composition-based stats. Identities = 73/541 (13%), Positives = 163/541 (30%), Gaps = 86/541 (15%) Query: 267 YKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYN----KAMFSIYKKG 322 W + E G+ A+K+ ++ + + + + + Y Sbjct: 112 ENWREYLERERGELAEKKKVVELPVKKKERVKDDNASSLALNQMGASQRGEVLLAHYGGE 171 Query: 323 HFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKS 382 + D + V+ ++ + + +D Sbjct: 172 LAI---------HADSDTVHHYNGVVWEP---------------------VQDKELQRAM 201 Query: 383 PRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQ 442 + + + + S + SL +++ +G +G+ D TG Sbjct: 202 AQIFIDAEISYSQNAIKSAVDTMKLSLPVMG---------NTARNLIGFSNGVFDTRTGN 252 Query: 443 KVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVS-GYFESEEVMDYFTRCVGMAL 494 + K ++ ++ PF + F + E++ D + M L Sbjct: 253 FREHNKNDWLLIASELPFSPPAEGETLATHAPNFWKWLHRSVAENDRKADRVLAALFMVL 312 Query: 495 LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLI 554 Q FI + G GGSGKS + + G ++A + R Sbjct: 313 ANRYDWQLFIEVTGPGGSGKSVMAEICTMLAGKANTVSASMKALEDAR---------ERA 363 Query: 555 RLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHL 614 ++G ++I+ + A IK +TGGD + + YS + + N + Sbjct: 364 LVVGFSLIIMPDMTRYAGDGAG-IKAITGGDKVAIDPKHKAPYSTRIPAVVLAV-NNNAM 421 Query: 615 FVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLD 672 + RR ++ F + + RD+ A+K+E + L Sbjct: 422 SFSDRSGGISRRRVIFNFSEVVPENERDSMLAEKIE-GELAVVIRHLLTRFANQDEARRL 480 Query: 673 VDIPEVCLKAKEEERQGTDTYQAW--------IDDCCDIGENL---WEESHSLAKSYSEY 721 + + +A ++ D+ + + D +G + L +Y Y Sbjct: 481 LYEQQKSEEALAI-KREGDSLVDFCGYLMASVMCDGLLVGNAEIVPFSPRRYLYHAYLAY 539 Query: 722 REQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDN 781 K ++ ++ G + RE ++++ K GL+ ++ Sbjct: 540 MRAHGFG--KPVTLTRFGKDMP--GAMAEYGREYMKRKTKH-----GLRSNVTLTEESED 590 Query: 782 S 782 Sbjct: 591 W 591 >gi|300954445|ref|ZP_07166897.1| nucleoside triphosphatase, D5 family [Escherichia coli MS 175-1] gi|300318595|gb|EFJ68379.1| nucleoside triphosphatase, D5 family [Escherichia coli MS 175-1] Length = 605 Score = 141 bits (356), Expect = 3e-31, Method: Composition-based stats. Identities = 72/541 (13%), Positives = 163/541 (30%), Gaps = 86/541 (15%) Query: 267 YKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYN----KAMFSIYKKG 322 W + E G+ +K+ ++ + + + + + Y Sbjct: 112 ENWREYLERERGELTEKKKVVELPVKKKERVKDDNASSLALNQMGASQRGEVLLAHYGGE 171 Query: 323 HFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKS 382 + D + V+ ++ + + +D Sbjct: 172 LAI---------HADSDTVHHYNGVVWEP---------------------VQDKELQRAM 201 Query: 383 PRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQ 442 + + + + S + SL +++ +G +G+ D TG Sbjct: 202 AQIFIDAEISYSQNAIKSAVDTMKLSLPVMG---------NTARNLIGFSNGVFDTRTGN 252 Query: 443 KVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVS-GYFESEEVMDYFTRCVGMAL 494 + K ++ ++ PF + F + E++ D + M L Sbjct: 253 FRQHNKNDWLLIASELPFSPPAEGETLATHAPNFWKWLRRSVAENDRKADRVLAALFMVL 312 Query: 495 LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLI 554 Q FI + G GGSGKS + + G ++A + R Sbjct: 313 ANRYDWQLFIEVTGPGGSGKSVMAEICTMLAGKANTVSASMKALEDAR---------ERA 363 Query: 555 RLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHL 614 ++G ++I+ + A IK +TGGD + + YS + + N + Sbjct: 364 LVVGFSLIIMPDMTRYAGDGAG-IKAITGGDKVAIDPKHKAPYSTRIPAVVLAV-NNNAM 421 Query: 615 FVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLD 672 + RR ++ F + + RD+ A+K+E + L Sbjct: 422 SFSDRSGGISRRRVIFNFSEVVPENERDSMLAEKIE-GELAVVIRHLLTRFADQDEARRL 480 Query: 673 VDIPEVCLKAKEEERQGTDTYQAW--------IDDCCDIGENL---WEESHSLAKSYSEY 721 + + +A ++ D+ + + D +G + L +Y Y Sbjct: 481 LYEQQKSEEALAI-KREGDSLVDFCGYLMASVMCDGLLVGNAEIVPFSPRRYLYHAYLAY 539 Query: 722 REQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDN 781 + K ++ ++ G + RE ++++ K GL+ ++ Sbjct: 540 MKAHGFG--KPVTLTRFGKDMP--GAMAEYGREYMKRKTKH-----GLRSNVTLTEESED 590 Query: 782 S 782 Sbjct: 591 W 591 >gi|323946009|gb|EGB42047.1| poxvirus D5 protein [Escherichia coli H120] Length = 774 Score = 141 bits (356), Expect = 3e-31, Method: Composition-based stats. Identities = 66/433 (15%), Positives = 121/433 (27%), Gaps = 65/433 (15%) Query: 364 EDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLD 423 + + S R R + K S ++L+ I + Sbjct: 351 QLLSRYESGAWKVISQSDFARDVAALFQRLGAPFSSGKIASLVETLK-----LIVPQQQN 405 Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGY 476 S +G ++G+LD TG KE ++ F + F + Sbjct: 406 PSRHLIGFRNGVLDTRTGLFSPHCKENWLRTLCEVDFTPPVKGETLETHAPAFWRWLDRA 465 Query: 477 FE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535 D + M L Q F+ + G GGSGKS L + G +A Sbjct: 466 AGHKPAKRDIILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNATSATI 525 Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595 + R L+G ++ + + + A +K +TGGD ++ Y N Sbjct: 526 ETLESPR---------ERAALIGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYQN 575 Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTL 653 YS V N + + RR +++ F + I RD K+ Sbjct: 576 AYSTHIP-AVILAVNNNPMRFTDRSGGVSRRRVILHFPEQIAPEERDPQLKDKIAR-ELA 633 Query: 654 EAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIG 704 + ++ P + + ++ D + + Sbjct: 634 VIVRQLMQ----------RFSDPMSARTLLQSQQNSDEALTIKRDADPAFDFCG-YLEAL 682 Query: 705 ENL------------WEESHSLAKSYSEYREQELNYDRKRISTRTVTL----NLKQKGFI 748 + + L +Y Y E + +S LK+ G Sbjct: 683 PDTNGMFMGNANIVPRQPRTYLYHAYLVYMEANGF--KNTLSLTMFGKGLPVMLKEYGLN 740 Query: 749 GGIKREKIEKEWK 761 +R + Sbjct: 741 YEKRRTNQGMQTN 753 >gi|6739647|gb|AAF27348.1|AF198256_2 phage phi-R73 primase-like protein [Haemophilus influenzae] Length = 589 Score = 141 bits (356), Expect = 4e-31, Method: Composition-based stats. Identities = 59/422 (13%), Positives = 134/422 (31%), Gaps = 48/422 (11%) Query: 364 EDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLD 423 +++ + + +N + +S + ++L+A Sbjct: 177 REIYAYDGKTWNKQENDDLEEKAVKFLDENEFNYSDSTIERLIKTLKAQLPRMGEMSN-- 234 Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPS-QEFLDLVSGYF-ESEE 481 + ++G+L+ T + ++ ++T + + F +S +++ Sbjct: 235 ---DLIAFENGVLNRNTMEFESHNRQNWLTSCIPHKYDKQATDTPLFDKWLSFVSDGNKD 291 Query: 482 VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQN 541 + L Q F I G GGSGKS ++ G + ++ Sbjct: 292 KARNILAVLYAILTNRYNWQMFFEITGKGGSGKSVFASIATLLAGVKNTASSNLEKFDDE 351 Query: 542 RPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESP 601 R L L +++ E ++ + +K +TGGD + R NY + + + Sbjct: 352 RG---------LSGLENKTLILCPEQSKYAGDGSG-LKSITGGDTVRVRYNYQDPF-DVK 400 Query: 602 ASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWF 659 + ++ N+ RR ++ F K + RD F K+ + Sbjct: 401 ITALVMLINNRPCSFTERSGGVDRRRVIFDFKKIVPEDERDPHFMDKITL-EVGGIIRKV 459 Query: 660 LKGVKAYISKGLDVDIPEVCLKAKEEERQG------TDTYQAWI-----DDCCD------ 702 D + + LKA+ E ++ +D + + D Sbjct: 460 FDSFH-------DPNDAKKALKAQMESQEALEVKKLSDPLTDFFGYFYTTEQTDGLFIGV 512 Query: 703 IGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKS 762 L + L +Y Y + + + + ++Q G K +++ K+ Sbjct: 513 TNMGLDKIRTHLYPAYLAYTKA---MNIGELGLNNFVIGVEQALKQNGNKHNFMKRHTKT 569 Query: 763 KR 764 R Sbjct: 570 GR 571 >gi|432620|emb|CAA53920.1| unnamed protein product [Streptomyces phage phiC31] Length = 519 Score = 141 bits (356), Expect = 4e-31, Method: Composition-based stats. Identities = 45/263 (17%), Positives = 87/263 (33%), Gaps = 30/263 (11%) Query: 308 SDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVF 367 SDA N + G Y + ++W +A+ + + Sbjct: 278 SDAMNAHALVAWTDGRIKYAS---------GLGYFVWDGVTWVKSATRVRQEIHAMGAAL 328 Query: 368 DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSR 427 L+ + ++ + L + + ++ D+++ Sbjct: 329 VLAG-----------------CLPESRGFTMTTRIDALMTELRSVPSVHVEAEEFDANAH 371 Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE-SEEVMDYF 486 L +G++DL TG+ K +T S + + + + F + +++ Y Sbjct: 372 LLSFANGVVDLRTGKLRAHDKGDMLTVSLPIEYDPNAQAPRWEQFLQEIFPNNADLVGYM 431 Query: 487 TRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEA 546 R VG + G Q F + G G +GKS + FG A+ + Sbjct: 432 RRLVGYGITGNTSEQCFAVLWGKGANGKSVFTETLTDVFGRITKTTPFATFEDKGNG--- 488 Query: 547 GKANPSLIRLMGSRIVIISETNE 569 G L L GSR+V+ SE + Sbjct: 489 GGIPNDLAALRGSRLVMASEASR 511 >gi|56416267|ref|YP_153342.1| hypothetical protein SPA4299 [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197365190|ref|YP_002144827.1| hypothetical protein SSPA3993 [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|56130524|gb|AAV80030.1| hypothetical protein SPA4299 [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|197096667|emb|CAR62284.1| hypothetical protein SSPA3993 [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] Length = 777 Score = 141 bits (355), Expect = 4e-31, Method: Composition-based stats. Identities = 58/368 (15%), Positives = 111/368 (30%), Gaps = 54/368 (14%) Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478 R +G ++G+LD TG K ++ F + F + Sbjct: 411 RRLIGFRNGVLDTATGTFSPHHKSHWLRTLCDVDFTPPVEGETLETHAPHFWRWLDRAAG 470 Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537 E D + M L Q F+ + G GGSGKS L + G +A Sbjct: 471 GKPEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNATSATIET 530 Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597 + R L+G ++ + + + A +K +TGGD ++ Y + Y Sbjct: 531 LESPR---------ERAALIGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYKDAY 580 Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEA 655 S + + N + + RR +++ F + I RD K+ Sbjct: 581 STHIPAVILAV-NNNPMRFTDRSGGVSRRRVILHFPEQIAPEERDPQLKNKIAR-ELAVI 638 Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWID--DCCDIG 704 + ++ P + + ++ D + + Sbjct: 639 VRQLMQ----------RFSDPMTAHALLQSQQNSDEALSIKRDADPTFDFCGYLEALPEP 688 Query: 705 ENLWE---------ESHSLAKSYSEYREQEL--NYDRKRISTRTVTLNLKQKGFIGGIKR 753 E ++ L +Y Y E N + + + LK+ G +R Sbjct: 689 EGMYIGNANIIPRQPRLYLYHAYLAYMEAHGYKNTLSLTMFGKGLPAMLKEYGLSYEKRR 748 Query: 754 EKIEKEWK 761 + + Sbjct: 749 KNQGIQTN 756 >gi|300957418|ref|ZP_07169632.1| nucleoside triphosphatase, D5 family [Escherichia coli MS 175-1] gi|300315853|gb|EFJ65637.1| nucleoside triphosphatase, D5 family [Escherichia coli MS 175-1] Length = 774 Score = 141 bits (355), Expect = 5e-31, Method: Composition-based stats. Identities = 66/433 (15%), Positives = 121/433 (27%), Gaps = 65/433 (15%) Query: 364 EDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLD 423 + + S R R + K S ++L+ I + Sbjct: 351 QLLSRYESGAWKVISQSDFARDVAALFQRLGAPFSSGKIASLVETLK-----LIVPQQQN 405 Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGY 476 S +G ++G+LD TG KE ++ F + F + Sbjct: 406 PSRHLIGFRNGVLDTRTGLFSPHCKENWLRTLCEVDFTPPVKGETLETHAPAFWRWLDRA 465 Query: 477 FE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535 D + M L Q F+ + G GGSGKS L + G +A Sbjct: 466 AGHKPAKRDIILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNATSATI 525 Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595 + R L+G ++ + + + A +K +TGGD ++ Y N Sbjct: 526 ETLESPR---------ERAALIGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYQN 575 Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTL 653 YS V N + + RR +++ F + I RD K+ Sbjct: 576 AYSTHIP-AVILAVNNNPMRFTDRSGGVSRRRVILHFPEQIAPEERDPQLKDKIAR-ELA 633 Query: 654 EAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIG 704 + ++ P + + ++ D + + Sbjct: 634 VIVRQLMQ----------RFSDPMSARTLLQSQQNSDEALTIKRDADPAFDFCG-YLEAL 682 Query: 705 ENL------------WEESHSLAKSYSEYREQELNYDRKRISTRTVTL----NLKQKGFI 748 + + L +Y Y E + +S LK+ G Sbjct: 683 PDTNGMFMGNANIVPRQPRTYLYHAYLVYMEANGY--KNTLSLTMFGKGLPVMLKEYGLH 740 Query: 749 GGIKREKIEKEWK 761 +R + Sbjct: 741 YEKRRTNQGMQTN 753 >gi|260858430|ref|YP_003232321.1| putative DNA primase [Escherichia coli O26:H11 str. 11368] gi|257757079|dbj|BAI28581.1| putative DNA primase [Escherichia coli O26:H11 str. 11368] Length = 777 Score = 141 bits (355), Expect = 5e-31, Method: Composition-based stats. Identities = 66/433 (15%), Positives = 121/433 (27%), Gaps = 65/433 (15%) Query: 364 EDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLD 423 + + S R R + K S ++L+ I + Sbjct: 354 QLLSRYESGAWKVISQSDFARDVAALFQRLGAPFSSGKIASLVETLK-----LIVPQQQN 408 Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGY 476 S +G ++G+LD TG KE ++ F + F + Sbjct: 409 PSRHLIGFRNGVLDTRTGLFSPHCKENWLRTLCEVDFTPPVKGETLETHAPAFWRWLDRA 468 Query: 477 FE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535 D + M L Q F+ + G GGSGKS L + G +A Sbjct: 469 AGHKPAKRDIILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNATSATI 528 Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595 + R L+G ++ + + + A +K +TGGD ++ Y N Sbjct: 529 ETLESPR---------ERAALIGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYQN 578 Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTL 653 YS V N + + RR +++ F + I RD K+ Sbjct: 579 AYSTHIP-AVILAVNNNPMRFTDRSGGVSRRRVILHFPEQIAPEERDPQLKDKIAR-ELA 636 Query: 654 EAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIG 704 + ++ P + + ++ D + + Sbjct: 637 VIVRQLMQ----------RFSDPMSARTLLQSQQNSDEALTIKRDADPAFDFCG-YLEAL 685 Query: 705 ENL------------WEESHSLAKSYSEYREQELNYDRKRISTRTVTL----NLKQKGFI 748 + + L +Y Y E + +S LK+ G Sbjct: 686 PDTNGMFMGNANIVPRQPRTYLYHAYLVYMEANGY--KNTLSLTMFGKGLPVMLKEYGLH 743 Query: 749 GGIKREKIEKEWK 761 +R + Sbjct: 744 YEKRRTNQGMQTN 756 >gi|318604725|emb|CBY26223.1| zinc binding domain; DNA primase,Phage P4-associated; Replicative helicase RepA, Phage P4-associated [Yersinia enterocolitica subsp. palearctica Y11] Length = 764 Score = 141 bits (355), Expect = 5e-31, Method: Composition-based stats. Identities = 66/445 (14%), Positives = 130/445 (29%), Gaps = 56/445 (12%) Query: 363 KEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLL 422 E V+ E D + R + ++ ++++ Sbjct: 334 SETVYHYDGERWDKLPDGVLRRELVMIFNANDTPYSPAGIRNAIEAMKLQIPIMAEPS-- 391 Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPS-------QEFLDLVSG 475 +G Q+G+ DL+ Q ++ F E P F ++ Sbjct: 392 ---RHLIGFQNGVYDLKARQFRPHCANDWVQHHNDIIFTEPRPDENLARHAPHFAKWLAH 448 Query: 476 YFESE-EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534 E M + M L Q F+ + G GGSGKS ++ G Q + Sbjct: 449 AANDELPKMASIRAALFMILSNRFDWQLFLEVTGEGGSGKSVFTHIATLLAGRQNTASGN 508 Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK-IKQMTGGDCMTARLNY 593 + + Q R + +G + I+ ++ + IK +TGGD + Y Sbjct: 509 MAALDQARGR---------AQFVGKSL--ITLPDQVKYVGEGAGIKAITGGDLVEIDGKY 557 Query: 594 GNTYSESPASFTPFIVPNKHLF-VRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETK 650 +S T + N RR ++ F+ P+ ++D +K+ Sbjct: 558 EKQFSTLI--TTVVLATNNEPISFTERQGGIARRRVIFAFNHPVKEADKDPQIGEKI-AA 614 Query: 651 YTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE----- 705 + L + +A ++ D + ++GE Sbjct: 615 ELPVVIRCLLAEFVDQDKARKLLLEQRDSREAMGI-KRDADPLYGFCAHIVELGEAVGMY 673 Query: 706 ------NLWEESHSLAKSYSEYREQELNYDRKRIST--RTVTLNLKQKGFIGGIKREKIE 757 + L +Y Y E + ++ + +K+ G Sbjct: 674 MGTLAISPRAPRIYLYHAYLAYMEAYGHQRSLSLTKFGKDFPKVMKEFG----------- 722 Query: 758 KEWKSKRIIKGLKLKPAFESVDDNS 782 E+K R KG + ++ Sbjct: 723 AEYKKARTDKGFRYNMDLSDTANDW 747 >gi|298674303|ref|YP_003726053.1| phage/plasmid primase [Methanohalobium evestigatum Z-7303] gi|298287291|gb|ADI73257.1| phage/plasmid primase, P4 family [Methanohalobium evestigatum Z-7303] Length = 479 Score = 141 bits (354), Expect = 5e-31, Method: Composition-based stats. Identities = 63/438 (14%), Positives = 134/438 (30%), Gaps = 28/438 (6%) Query: 351 ITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKST--AQS 408 I + N L + D E NS F N + N + + Sbjct: 46 IYKNNPNLLDRIIYDEGARLSELRGKGNNSPFTDFDNNNSPFKDFDNSNLIKEEVERVKH 105 Query: 409 LEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ- 467 + + I +++ +L +G+L+L+TG+ + E+Y TK + + Sbjct: 106 VIQSKLRCIDKSQINTDKFYLPVNNGLLELKTGKLKNFSPEIYFTKKIPIDYKKDTNVPC 165 Query: 468 EFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFG 526 EF + + F E + +G L G +F+ +RG+ +G + ++ L+K G Sbjct: 166 EFFNFLKDIFEGDEWQIYVLQEYLGYTLYCGYPFDKFLFLRGLPENGINVILELMKSLVG 225 Query: 527 NQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDC 586 + SD+++ + + I E +N N ++ ++ G + Sbjct: 226 DVNYHTLTFSDLLKEKSAVQ-------LEYYDKLFNICGEMGKNVSPNPEQLGKLVGDNA 278 Query: 587 MTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVI---PFDKPI-ANRDAS 642 + Y + +K V ++ I++ P +K I + + Sbjct: 279 IKVDEKYEYGF-TFKNRTKLLFTGDKLPDVNRLSADLIKKLIILDVFPKEKRIQNDEIPN 337 Query: 643 FAQKLETKYTL----EAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQ-GTDTYQAWI 697 Q W L+G++ + E E + ++ Sbjct: 338 VHQIQIMCENPTFLKGILSWALEGLQRLLYNN-GFSYSEKIDNKINEMLTLKENHIDLYV 396 Query: 698 DDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIE 757 + S + Y + + G K K + Sbjct: 397 GQRIAHNTGSFCPSDMVYSDYISFASE---LGITPYGKSKFYSEFIDACIKFGYKLYKTQ 453 Query: 758 KEWKSK---RIIKGLKLK 772 K + + + + LK Sbjct: 454 KTYNNGKRHQSFVNISLK 471 >gi|194444462|ref|YP_002043737.1| bacteriophage P4 DNA primase [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194403125|gb|ACF63347.1| bacteriophage P4 DNA primase [Salmonella enterica subsp. enterica serovar Newport str. SL254] Length = 776 Score = 141 bits (354), Expect = 5e-31, Method: Composition-based stats. Identities = 58/371 (15%), Positives = 106/371 (28%), Gaps = 60/371 (16%) Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478 +G ++G+LD TG KE ++ F + F + Sbjct: 410 RHLIGFRNGVLDTRTGLFSPHCKENWLRTLCEVDFTPPVKGETLETHAPAFWRWLDRAAG 469 Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537 D + M L Q F+ + G GGSGKS L + G +A Sbjct: 470 HKPAKRDIILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNATSATIET 529 Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597 + R L+G ++ + + + A +K +TGGD ++ Y N Y Sbjct: 530 LESPR---------ERAALIGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYQNAY 579 Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEA 655 S V N + + RR +++ F + I RD K+ Sbjct: 580 STHIP-AVILAVNNNPMRFTDRSGGVSRRRVILHFPEQIAPEERDPQLKDKIAR-ELAVI 637 Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGEN 706 + ++ P + + ++ D + + + Sbjct: 638 VRQLMQ----------RFSDPMSARTLLQSQQNSDEALTIKRDADPAFDFCG-YLEALPD 686 Query: 707 L------------WEESHSLAKSYSEYREQELNYDRKRISTRTVTL----NLKQKGFIGG 750 + L +Y Y E + +S LK+ G Sbjct: 687 TNGMFMGNANIVPRQPRTYLYHAYLVYMEANGY--KNTLSLTMFGKGLPVMLKEYGLHYE 744 Query: 751 IKREKIEKEWK 761 +R + Sbjct: 745 KRRTNQGMQTN 755 >gi|170680147|ref|YP_001743025.1| D5 family nucleoside triphosphatase [Escherichia coli SMS-3-5] gi|170517865|gb|ACB16043.1| nucleoside triphosphatase, D5 family [Escherichia coli SMS-3-5] Length = 605 Score = 141 bits (354), Expect = 6e-31, Method: Composition-based stats. Identities = 71/541 (13%), Positives = 160/541 (29%), Gaps = 86/541 (15%) Query: 267 YKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYN----KAMFSIYKKG 322 W + E + A+K+ ++ + + + + + Y Sbjct: 112 ENWREYLERERAEQAEKKKVVELPVKKKERVKDDNASSLALNQMGASQRGEVLLAHYGGE 171 Query: 323 HFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKS 382 + D + V+ ++ + + +D Sbjct: 172 LAI---------HADSDTVHHYNGVVWEP---------------------VQDKELQRAM 201 Query: 383 PRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQ 442 + + + + S + SL +++ +G +G+ D TG Sbjct: 202 AQIFIDAEISYSQNAIKSAVDTMKLSLPVMG---------NTARNLIGFSNGVFDTRTGN 252 Query: 443 KVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVS-GYFESEEVMDYFTRCVGMAL 494 + K ++ ++ PF + F + E++ D + M L Sbjct: 253 FREHNKNDWLLIASELPFSPPAEGETLATHAPNFWKWLRRSVAENDRKADRVLAALFMVL 312 Query: 495 LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLI 554 Q FI + G GGSGKS + + G ++A + R Sbjct: 313 ANRYDWQLFIEVTGPGGSGKSVMAEICTMLAGKANTVSASMKALEDAR---------ERA 363 Query: 555 RLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHL 614 ++G ++I+ + A IK +TGGD + + YS + + N + Sbjct: 364 LVVGFSLIIMPDMTRYAGDGAG-IKAITGGDKVAIDPKHKAPYSTRIPAVVLAV-NNNAM 421 Query: 615 FVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLD 672 + RR ++ F + + RD A+K+E + L Sbjct: 422 SFSDRSGGISRRRVIFNFSEVVPENERDPMLAEKIE-GELAVVIRHLLTRFADQDEARRL 480 Query: 673 VDIPEVCLKAKEEERQGTDTYQAW--------IDDCCDIGENL---WEESHSLAKSYSEY 721 + + +A ++ D+ + + D +G + L +Y Y Sbjct: 481 LYEQQKSEEALAI-KREGDSLVDFCGYLMASVMCDGLLVGNAEIVPFSPRRYLYHAYLAY 539 Query: 722 REQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDN 781 K ++ ++ G + RE ++++ K G + ++ Sbjct: 540 MRAHGFG--KPVTLTRFGKDMP--GAMAEYGREYMKRKTKH-----GFRSNVTLTEESED 590 Query: 782 S 782 Sbjct: 591 W 591 >gi|227329980|ref|ZP_03834004.1| hypothetical protein PcarcW_22653 [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 451 Score = 140 bits (353), Expect = 7e-31, Method: Composition-based stats. Identities = 55/352 (15%), Positives = 107/352 (30%), Gaps = 46/352 (13%) Query: 364 EDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLD 423 E F R + Q S S +L+ Sbjct: 99 ETFFQYQNGAWKVLPYRLLSRDIAALFQKIQAPFTASGIGSVLDTLKLIIPMQEKP---- 154 Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEG-------EPSQEFLDLVSGY 476 R +G ++G+ D +G+ +E ++ + + + F ++ Sbjct: 155 -QRRLIGFRNGVFDTVSGEFKPHRREHWLHTVNDVDYTPFKAGENLADNAPHFWRWLTRA 213 Query: 477 FES-EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535 + + + + M L Q F+ + G GGSGKS L + G A Sbjct: 214 AGNNADKQERILAALFMVLANCYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNTTAATI 273 Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595 + I +R + ++G ++++ + + A IK +TGGD + Y + Sbjct: 274 NTIESSRERSS---------IIGFSLIVLPDQEKWSGDGAG-IKAITGGDAVMVDPKYRD 323 Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTL 653 YS V N + + RR ++I F + I RD +K+ Sbjct: 324 AYSTRIP-AVILAVNNSPMRFSDRSGGVSRRRVIIHFGETIPASERDPKLKEKI-RAELA 381 Query: 654 EAKKWFLKGVKAYISKGLDVDIPEVCLKAKE---------EERQGTDTYQAW 696 + +K + P + E ++ D + Sbjct: 382 VIVRHLMK----------RFEEPNDARMLLQAQQHSAEALEIKRQADPLVDF 423 >gi|331664205|ref|ZP_08365111.1| bacteriophage P4 DNA primase [Escherichia coli TA143] gi|331058136|gb|EGI30117.1| bacteriophage P4 DNA primase [Escherichia coli TA143] Length = 591 Score = 140 bits (353), Expect = 7e-31, Method: Composition-based stats. Identities = 72/541 (13%), Positives = 160/541 (29%), Gaps = 86/541 (15%) Query: 267 YKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYN----KAMFSIYKKG 322 W + E + A+K+ ++ + + + + + Y Sbjct: 98 ENWREYLERERAEQAEKKKVVELPVKKKERVKDDNASSLALNQMGASQRGEVLLAHYGGE 157 Query: 323 HFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKS 382 + D + V+ ++ + + +D Sbjct: 158 LAI---------HADSDTVHHYNGVVWEP---------------------VQDKELQRAM 187 Query: 383 PRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQ 442 + + + + S + SL +++ +G +G+ D TG Sbjct: 188 AQIFIDAEISYSQNAIKSAVDTMKLSLPVMG---------NTARNLIGFSNGVFDTRTGN 238 Query: 443 KVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVS-GYFESEEVMDYFTRCVGMAL 494 K ++ ++ PF + F + E++ D + M L Sbjct: 239 FRGHNKNDWLLIASELPFSPPAEGETLATHAPNFWKWLRRSVAENDRKADRVLAALFMVL 298 Query: 495 LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLI 554 Q FI + G GGSGKS + + G ++A + R Sbjct: 299 ANRYDWQLFIEVTGPGGSGKSVMAEICTMLAGKANTVSASMKALEDAR---------ERA 349 Query: 555 RLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHL 614 ++G ++I+ + A IK +TGGD + + YS + + N + Sbjct: 350 LVVGFSLIIMPDMTRYAGDGAG-IKAITGGDKVAIDPKHKAPYSTRIPAVVLAV-NNNAM 407 Query: 615 FVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLD 672 + RR ++ F + + RD A+K+E + L Sbjct: 408 SFSDRSGGISRRRVIFNFSEVVPENERDPMLAEKIE-GELAVVIRHLLTRFADQDEARRL 466 Query: 673 VDIPEVCLKAKEEERQGTDTYQAW--------IDDCCDIGENL---WEESHSLAKSYSEY 721 + + +A ++ D+ + + D +G + L +Y Y Sbjct: 467 LYEQQKSEEALAI-KREGDSLVDFCGYLMASVMCDGLLVGNAEIVPFSPRRYLYHAYLAY 525 Query: 722 REQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDN 781 K ++ ++ G + RE ++++ K GL+ ++ Sbjct: 526 MRAHGFG--KPVTLTRFGKDMP--GAMAEYGREYMKRKTKH-----GLRSNVTLTEESED 576 Query: 782 S 782 Sbjct: 577 W 577 >gi|307129027|ref|YP_003881043.1| DNA primase [Dickeya dadantii 3937] gi|306526556|gb|ADM96486.1| DNA primase [Dickeya dadantii 3937] Length = 589 Score = 140 bits (353), Expect = 7e-31, Method: Composition-based stats. Identities = 68/430 (15%), Positives = 138/430 (32%), Gaps = 52/430 (12%) Query: 374 EDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQD 433 D + + + + D S ++ SL + +T+ +G + Sbjct: 174 ADKELQREMAQIFIDADIAYSQNAIKSAVETMKLSL---PVMGVTAR------NLIGFSN 224 Query: 434 GILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFES-EEVMDY 485 G+ D +GQ KE ++ ++ PF + F +S + + D Sbjct: 225 GVFDTRSGQFRCHIKEDWLLIASELPFSAPAEGETLATHAPSFWKWLSRSVGNNKRKADR 284 Query: 486 FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545 + M L Q F+ + G GGSGKS + G ++A + R Sbjct: 285 VLAALFMVLANRYDWQLFLEVTGPGGSGKSVFAEICTMLAGKANTVSASMKALEDPR--- 341 Query: 546 AGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFT 605 ++G ++I+ + A IK +TGGD ++ + YS + Sbjct: 342 ------DRALVVGYSLIIMPDMTRYAGDGAG-IKAITGGDKVSIDPKHKAPYSTRIPAVV 394 Query: 606 PFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGV 663 + N + + RR ++ F + + RD A+K+E + L Sbjct: 395 LAV-NNNAMTFSDRSGGISRRRVIFNFSEVVPENERDPMLAEKIE-GELAVIIRHLLTRF 452 Query: 664 KAYISKGLDVDIPEVCLKAKEEERQGTDTYQAW--------IDDCCDIGENL---WEESH 712 + + +A ++ D+ + + D IG + Sbjct: 453 AKQDEAKRLLHEQQKSEEAMAI-KREGDSLVDFCGYLMASVLCDGMFIGNAEIVPFSPRR 511 Query: 713 SLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLK 772 L +Y Y K +S ++ G + +E +++ K GL+ Sbjct: 512 YLYHAYLAYMRANGLN--KPVSLTRFGTDMP--GAMAEYGKEYQKRKTK-----LGLRSN 562 Query: 773 PAFESVDDNS 782 ++ Sbjct: 563 VTLNEDSEDW 572 >gi|269140399|ref|YP_003297100.1| bacteriophage P4 DNA primase [Edwardsiella tarda EIB202] gi|267986061|gb|ACY85890.1| bacteriophage P4 DNA primase [Edwardsiella tarda EIB202] Length = 611 Score = 140 bits (352), Expect = 1e-30, Method: Composition-based stats. Identities = 62/372 (16%), Positives = 114/372 (30%), Gaps = 62/372 (16%) Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478 R +G ++G+LD TG +K ++ F + F + Sbjct: 245 RRLIGFRNGVLDTSTGIFSPHSKTHWLRTLCDVDFTPPVEGETLETHAPNFWRWLDRAAG 304 Query: 479 S-EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537 S + D + M L Q F+ + G GGSGKS L + G +A Sbjct: 305 SRADKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNATSATIET 364 Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597 + R L+G ++ + + + A +K +TGGD ++ Y + Y Sbjct: 365 LESPR---------ERAALIGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYRDAY 414 Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEA 655 S + + N + + RR +++ F + I RD K+ Sbjct: 415 STHIPAVILAV-NNNPMRFTDRSGGVSRRRVIMHFPEQIAPEERDPKLKDKIAR-ELAVI 472 Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGEN 706 + ++ P + + ++ D + C E Sbjct: 473 VRQLMQ----------TFSDPMTARTLLQSQQNSDEALSIKRDADPTFDF----CGYLEA 518 Query: 707 LWEESH---------------SLAKSYSEYREQEL--NYDRKRISTRTVTLNLKQKGFIG 749 L E L +Y Y E N + + ++ LK+ G Sbjct: 519 LPEPDGMYMGNANIIPRQPRLYLYHAYLVYMEAHGYKNTLSLTMFGKGLSSMLKEYGLNY 578 Query: 750 GIKREKIEKEWK 761 G +R + Sbjct: 579 GKRRTNQGMQTN 590 >gi|218698910|ref|YP_002406539.1| putative DNA primase from prophage [Escherichia coli IAI39] gi|218368896|emb|CAR16647.1| putative DNA primase from prophage (possibly fragment) [Escherichia coli IAI39] Length = 545 Score = 140 bits (351), Expect = 1e-30, Method: Composition-based stats. Identities = 65/441 (14%), Positives = 142/441 (32%), Gaps = 48/441 (10%) Query: 363 KEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLL 422 + V + + ++ + R + + KS +++ Sbjct: 118 SDTVHHYNGVVWEPVQDKELQRAMAQIFIDAEISYSQNAIKSAVDTMKLSLPVMG----- 172 Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVS- 474 +++ +G +G+ D TG + K ++ ++ PF + F + Sbjct: 173 NTARNLIGFSNGVFDTRTGNFREHNKNDWLLIASELPFSPPAEGETLATHAPNFWKWLRR 232 Query: 475 GYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534 E++ D + M L Q FI + G GGSGKS + + G ++A Sbjct: 233 SVAENDRKADRVLAALFMVLANRYDWQLFIEVTGPGGSGKSVMAEICTMLAGKANTVSAS 292 Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594 + R ++G ++I+ + A IK +TGGD + + Sbjct: 293 MKALEDAR---------ERALVVGFSLIIMPDMTRYAGDGAG-IKAITGGDKVAIDPKHK 342 Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYT 652 YS + + N + + RR ++ F + + RD+ A+K+E Sbjct: 343 APYSTRIPAVVLAV-NNNAMSFSDRSGGISRRRVIFNFSEVVPENERDSMLAEKIE-GEL 400 Query: 653 LEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAW--------IDDCCDIG 704 + L + + +A ++ D+ + + D +G Sbjct: 401 AVVIRHLLTRFADQDEARRLLYEQQKSEEALAI-KREGDSLVDFCGYLMASVMCDGLLVG 459 Query: 705 ENL---WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWK 761 + L +Y Y K ++ ++ G + RE ++++ K Sbjct: 460 NAEIVPFSPRRYLYHAYLAYMRAHGFG--KPVTLTRFGKDMP--GAMAEYGREYMKRKTK 515 Query: 762 SKRIIKGLKLKPAFESVDDNS 782 GL+ ++ Sbjct: 516 H-----GLRSNVTLTEESEDW 531 >gi|85703019|ref|ZP_01034123.1| hypothetical protein ROS217_19797 [Roseovarius sp. 217] gi|85671947|gb|EAQ26804.1| hypothetical protein ROS217_19797 [Roseovarius sp. 217] Length = 1012 Score = 140 bits (351), Expect = 1e-30, Method: Composition-based stats. Identities = 55/294 (18%), Positives = 103/294 (35%), Gaps = 23/294 (7%) Query: 4 MQWKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKID----KLPACGFGFVCG 59 + ++ A++ + NG++ IP++ G K P L +W ++ +D + +CG G G Sbjct: 30 ITFENAAERLLDNGYEPIPIKPGQKAPA-LNRWTSVVIDDAALDDWRGRYASCGIGLRTG 88 Query: 60 VGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTT 119 + L DID D A+ + G +VR+G PK L+ +R Sbjct: 89 L----LVGIDIDVLDPDRAHDVQALAVRRFGETLVRVGCWPKRLLIYRTEIPF------A 138 Query: 120 ESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFK--VEDTPLLSEEDVEYLFKFF 177 + G ++ILG GQ FVA+ IHP T + Y W + D P++ ++ Sbjct: 139 KMKSGQVEILGQGQQFVAFGIHPGTGRPYAWPLGETPLDVALSDLPVIDHTEIAAFLAEI 198 Query: 178 QEITVPLVKDK--KSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSH---DEWIPV 232 + + D + + + Q + ++ + V Sbjct: 199 EPTDHRSITDAGGRRRKAAGFGHPVRDAQGVVTDGRDAWLSLIAFHAVHDLLEAEDALDV 258 Query: 233 VMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKW-DTFDFEEIGDTAKKRS 285 + + ++ R TY + K D G + Sbjct: 259 DQLAAQVWQRFGESTDLTRPRQDGARTYTYSDAVRKVHDKMRLHATGALPSRDR 312 >gi|85703049|ref|ZP_01034153.1| hypothetical protein ROS217_19947 [Roseovarius sp. 217] gi|85671977|gb|EAQ26834.1| hypothetical protein ROS217_19947 [Roseovarius sp. 217] Length = 791 Score = 140 bits (351), Expect = 1e-30, Method: Composition-based stats. Identities = 55/294 (18%), Positives = 103/294 (35%), Gaps = 23/294 (7%) Query: 4 MQWKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKID----KLPACGFGFVCG 59 + ++ A++ + NG++ IP++ G K P L +W ++ +D + +CG G G Sbjct: 30 ITFENAAERLLDNGYEPIPIKPGQKAPA-LNRWTSVVIDDAALDDWRGRYASCGIGLRTG 88 Query: 60 VGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTT 119 + L DID D A+ + G +VR+G PK L+ +R Sbjct: 89 L----LVGIDIDVLDPDRAHDVQALAVRRFGETLVRVGCWPKRLLIYRTEIPF------A 138 Query: 120 ESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFK--VEDTPLLSEEDVEYLFKFF 177 + G ++ILG GQ FVA+ IHP T + Y W + D P++ ++ Sbjct: 139 KMKSGQVEILGQGQQFVAFGIHPGTGRPYAWPLGETPLDVALSDLPVIDHTEIAAFLAEI 198 Query: 178 QEITVPLVKDK--KSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSH---DEWIPV 232 + + D + + + Q + ++ + V Sbjct: 199 EPTDHRSITDAGGRRRKAAGFGHPVRDAQGVVTDGRDAWLSLIAFHAVHDLLEAEDALDV 258 Query: 233 VMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKW-DTFDFEEIGDTAKKRS 285 + + ++ R TY + K D G + Sbjct: 259 DQLAAQVWQRFGESTDLTRPRQDGARTYTYSDAVRKVHDKMRLHATGALPSRDR 312 >gi|168061752|ref|XP_001782850.1| predicted protein [Physcomitrella patens subsp. patens] gi|162665628|gb|EDQ52305.1| predicted protein [Physcomitrella patens subsp. patens] Length = 445 Score = 140 bits (351), Expect = 1e-30, Method: Composition-based stats. Identities = 45/238 (18%), Positives = 88/238 (36%), Gaps = 17/238 (7%) Query: 487 TRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEA 546 R + L G N + F G G +GK+ +++L++ AFG+ V S +M R ++ Sbjct: 1 MRFISSCLEGRNANKIFSIWSGSGDNGKTVMVSLVERAFGDYAV-KMPTSLLMGKR-VQS 58 Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 A P + L G I ++ E +E D++N +K++ G D + R Y P + Sbjct: 59 LAATPEVAMLKGRLIALVEEPDEGDKLNLGVMKELKGNDSLYVRGLYKEGAV-IPQTAKF 117 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 ++ N+ ++ D + F I + ++ K Y Sbjct: 118 VLIANRISQMKPSHDPLTTHLRDVNFSNKIP------------LLAPVFMRLVIEEYKQY 165 Query: 667 ISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQ 724 ++ GL + P E D + ++ + L +Y + + Sbjct: 166 LTYGL--EEPNDVKDCTETIHVSNDIFGQFLSANVEKSNKSIVAIKELYDTYKYWSKD 221 >gi|86158263|ref|YP_465048.1| hypothetical protein Adeh_1839 [Anaeromyxobacter dehalogenans 2CP-C] gi|85774774|gb|ABC81611.1| conserved hypothetical protein [Anaeromyxobacter dehalogenans 2CP-C] Length = 751 Score = 139 bits (350), Expect = 2e-30, Method: Composition-based stats. Identities = 89/621 (14%), Positives = 175/621 (28%), Gaps = 111/621 (17%) Query: 29 RPQRLGKWEEQLLSSEKIDKL---PACGFGFVCGVGEQPLYAFDIDSKDEKTANTF---K 82 + W + + + P G GFV + + D D + + Sbjct: 43 KTNDPKTWRPFRDALAFLKRTYDDPQAGVGFVF-QRKLGVVFIDFDHCLDTSGALLPWAA 101 Query: 83 DTFEILHGTPIVRIGQKPKILIPF--RMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNI 140 E GT + R + + + K + H+++ +Y Sbjct: 102 PLLEPFRGTYVERSLSGRGLHVLALGSVPHAFSKLVPPAAAGDEHIEVYSEKRYAAI--- 158 Query: 141 HPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNN 200 T Y ++ D +++++ L + +P Sbjct: 159 ---TGDTY----DGAPAELLD----KQKELDALLRALAPKATVAATRSDEHVPLSA---- 203 Query: 201 NNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTY 260 +E+ S + HDEW+ V MA+H GS++G + WS G Y Sbjct: 204 -------QEVDKIRSALDAIDPDVGHDEWLRVGMALHFGFEGSAEGLALWNEWSAGGGKY 256 Query: 261 DEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYK 320 +W +F + T SLF+ K + + A Sbjct: 257 KNGEPADRWRSF--------KRNGVTLGSLFHFAKKHGWRPEPTAEQDFGPALAR----- 303 Query: 321 KGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNS 380 F+ D + + I S +F+ D + + Sbjct: 304 DEAFVSLDDLNSQFFV--------------IEESGRHFVACESYD----------HARRR 339 Query: 381 KSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLG---------E 431 + + + +++ + + + Q A S ++LG Sbjct: 340 RMLKRFSFAEFKARYLGRTVLNEKGRQIPMAKSWL-----EWPGRRQYLGGVVFVPGRSL 394 Query: 432 QDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVG 491 +L+L G V P + V + E V G+ + R Sbjct: 395 PSDVLNLWGGWAVAPKPGDWSLLREHIHDVICSKNDELDAYVMGW-----LRRLVQR--- 446 Query: 492 MALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANP 551 + + +RGV G+GKS + ++ G + A + Sbjct: 447 ----PDEPGEVVLVLRGVQGAGKSVVGYALQRMCGQHGMAVASQRAVTGQF----NAHLR 498 Query: 552 SLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPN 611 L+ L+ + V D + +K + + + E P + N Sbjct: 499 DLLLLVANEAVF-----PGDRSGTSALKALATDPTIFLEQKGIDA-VEVPNYLHILMTTN 552 Query: 612 KHLFVRNP-DDAWWRRYIVIP 631 ++ V DD RR+ V+ Sbjct: 553 ENWAVPVALDD---RRFAVLD 570 >gi|296532655|ref|ZP_06895354.1| phage/plasmid primase [Roseomonas cervicalis ATCC 49957] gi|296267026|gb|EFH12952.1| phage/plasmid primase [Roseomonas cervicalis ATCC 49957] Length = 489 Score = 139 bits (350), Expect = 2e-30, Method: Composition-based stats. Identities = 61/511 (11%), Positives = 142/511 (27%), Gaps = 61/511 (11%) Query: 291 FYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDK 350 G + + + + D + + Sbjct: 17 LEWSPDDKDGGDTCRERLEIGSDVEIARRVSEDLCNSFD----------RIVHADGQFWR 66 Query: 351 ITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLE 410 + + ++ + + + + + + + ++ + + Sbjct: 67 Y--EGTCWRPIPEPELRRVVHCYDGAEYTTPTGKPSAVALSKARINSSLNEMAAMLAAP- 123 Query: 411 AGSIFSITSDLLDSSSRFLGEQDGILDLETG---QKVKPTKELYITKSTGTPFVEG-EPS 466 + + + G ++ E + E + + P Sbjct: 124 ---------NFFVDAPAGINCASGFIEFERDGTPTIKPHSPEQRARHTLPGRYPAKIAPD 174 Query: 467 QE----FLDLVSGYF-ESEE---VMDYFTRCVGMALLGGNK---AQRFIHIRGVGG-SGK 514 Q L+ G F E+ +++ G A G + + I ++G +GK Sbjct: 175 QRAASLMTKLLQGCFKGDEDAEAKINFLGEIAGAAATGWSTRLTKPKAIILKGETAENGK 234 Query: 515 STLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEIN 574 S +++L++ + + + + R L+ L G + E I Sbjct: 235 SQILDLLRGLLPDTAICSIPPQKLADERF---------LVTLAGKLLNASDELTSATAIG 285 Query: 575 AAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRN-PDDAWWRRYIVIPFD 633 + K G+ M+ R Y + N R D RR + F Sbjct: 286 SDSFKSAITGEPMSGRDVYRSA-VGFRPFALHVYATNDLPTFRGGMDRGVMRRLAALTFQ 344 Query: 634 KPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTD 691 + I R Q++ + ++G I++ P +A E G D Sbjct: 345 RTIPTNERIEHIGQRIGQDEPDLLLDFAVQGASRLIARK-SYAEPTSSNQAIREWALGAD 403 Query: 692 TYQAWIDDCCDIG-ENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGG 750 QAW+ G + ++ + + + +E + T + + Sbjct: 404 AVQAWLHTVNVTGNAHDKCKTREAYQYFRNWALEEGYQSTALPAVTQFTQRVVAQRPQIT 463 Query: 751 IKREKIEKEWKSKRIIKGLKLKPAFESVDDN 781 I + ++GL+L P S+DD+ Sbjct: 464 I------IRPQRVSHLRGLRLGP--PSIDDS 486 >gi|260846581|ref|YP_003224359.1| putative DNA primase [Escherichia coli O103:H2 str. 12009] gi|257761728|dbj|BAI33225.1| putative DNA primase [Escherichia coli O103:H2 str. 12009] gi|326339871|gb|EGD63678.1| DNA primase , phage-associated [Escherichia coli O157:H7 str. 1125] Length = 608 Score = 139 bits (350), Expect = 2e-30, Method: Composition-based stats. Identities = 71/541 (13%), Positives = 160/541 (29%), Gaps = 86/541 (15%) Query: 267 YKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYN----KAMFSIYKKG 322 W + E + A+K+ ++ + + + + + Y Sbjct: 115 ENWREYLERERAEQAEKKKVVELPVKKKERVKDDNASSLALNQMGASQRGEVLLAHYGGE 174 Query: 323 HFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKS 382 + D + V+ ++ + + +D Sbjct: 175 LAI---------HADSDTVHHYNGVVWEP---------------------VQDKELQRAM 204 Query: 383 PRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQ 442 + + + + S + SL +++ +G +G+ D TG Sbjct: 205 AQIFIDAEISYSQNAIKSAVDTMKLSLPVMG---------NTARNLIGFSNGVFDTRTGN 255 Query: 443 KVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVS-GYFESEEVMDYFTRCVGMAL 494 + K ++ ++ PF + F + E++ D + M L Sbjct: 256 FREHNKNDWLLIASELPFSPPAEGETLATHAPNFWKWLRRSVAENDRKADRVLAALFMVL 315 Query: 495 LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLI 554 Q FI + G GGSGKS + + G ++A + R Sbjct: 316 ANRYDWQLFIEVTGPGGSGKSVMAEICTMLAGKANTVSASMKALEDAR---------ERA 366 Query: 555 RLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHL 614 ++G ++I+ + A IK +TGGD + + YS + + N + Sbjct: 367 LVVGFSLIILPDMTRYAGDGAG-IKAITGGDKVAIDPKHKAPYSTRIPAVVLAV-NNSAM 424 Query: 615 FVRNPDDAWWRRYIVIPFDKPIAN--RDASFAQKLETKYTLEAKKWFLKGVKAYISKGLD 672 + RR ++ F + + RD +K+E + L Sbjct: 425 SFSDRSGGISRRRVIFNFSEVVPENERDPMLPEKIE-GELAVVIRHLLTRFADQDEARRL 483 Query: 673 VDIPEVCLKAKEEERQGTDTYQAW--------IDDCCDIGENL---WEESHSLAKSYSEY 721 + + +A ++ D+ + + D +G + L +Y Y Sbjct: 484 LYEQQKSEEALAI-KREGDSLVDFCGYLMSSVMCDGLLVGNAEIIPFSPRRYLYHAYLSY 542 Query: 722 REQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDN 781 K ++ ++ G + RE ++K K +G++ ++ Sbjct: 543 MRAHGFS--KPVTLTRFGADMP--GAMAEYGREYMKKRTK-----EGVRSNVILTDESED 593 Query: 782 S 782 Sbjct: 594 W 594 >gi|218961148|ref|YP_001740923.1| hypothetical protein CLOAM0836 [Candidatus Cloacamonas acidaminovorans] gi|167729805|emb|CAO80717.1| hypothetical protein CLOAM0836 [Candidatus Cloacamonas acidaminovorans] Length = 343 Score = 139 bits (349), Expect = 2e-30, Method: Composition-based stats. Identities = 43/256 (16%), Positives = 80/256 (31%), Gaps = 13/256 (5%) Query: 24 RLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKD 83 + G K + +W+ LS E I + + G Q L DID +D + Sbjct: 61 KKGKKVVSNMPQWKNSSLSVESIKQE-HNAIAIITGEASQ-LMVIDIDKRDADIYALLAE 118 Query: 84 TFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQG-----HLDILGCGQYFVAY 138 + + + E KK+ ++ +DI G A Sbjct: 119 YGLEIDNYCYALTPSGGMHIYLNLSHSELWKKRYGRKTLTTTNKNIGIDIRAEGGLIFAP 178 Query: 139 NIHPKTKKEYTWTTPPHRFKVEDT-PLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTW 197 Y W P + D P ++ +F + T K + Sbjct: 179 PSIVTNGGFYEWVNMPVNKEDTDYDPNKLIPIMDAIFGYNNNPTPLAPIQKTITKSYFPF 238 Query: 198 TNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQG 257 T N Q + + N +++WI + +A+ +E +G + ++ Sbjct: 239 TYYPNIQDNYDQAAQLIRKLNGTIIN--YNDWIRMGIALKNEF--GKRGLSLWLLFADNS 294 Query: 258 S-TYDEENFNYKWDTF 272 + EE KW++F Sbjct: 295 AYQDTEEYLIKKWNSF 310 >gi|300724194|ref|YP_003713512.1| putative P4-specific DNA primase [Xenorhabdus nematophila ATCC 19061] gi|297630729|emb|CBJ91394.1| putative P4-specific DNA primase [Xenorhabdus nematophila ATCC 19061] Length = 812 Score = 139 bits (349), Expect = 2e-30, Method: Composition-based stats. Identities = 61/426 (14%), Positives = 128/426 (30%), Gaps = 43/426 (10%) Query: 359 LVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSIT 418 L E V N R + + +L+ Sbjct: 382 LDGASETVHHYDGIVWCPVSNRDLQREMVAAFMEEKMPYSPHGISAAVDALKLQLPMMNA 441 Query: 419 SDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVE-------GEPSQEFLD 471 + +G ++G+ DL+ GQ K ++ + F + +F Sbjct: 442 PE-----RHLIGFRNGVFDLKIGQFRPHHKHDWLLLANDVEFNSPVSGETLHSHAPQFWH 496 Query: 472 LVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530 ++ E + + M L Q F+ + G GGSGKS + G Sbjct: 497 WLNRATAHCENKAERVLAALFMVLANRYDWQLFLEVTGAGGSGKSIFAEICMMLAGKGNT 556 Query: 531 INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK-IKQMTGGDCMTA 589 ++A + + R ++G ++I+ ++ + IK +TGGD + Sbjct: 557 VSASMAALENPR---------ERALIVGYSLIIL--PDQTRYVGDGSGIKAITGGDEVAI 605 Query: 590 RLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDAS-FAQKLE 648 + YS + + N + + RR ++ F + + + + Sbjct: 606 DPKHKQPYSTRIPAVVLAV-NNNAMSFSDRSGGVSRRRVIFNFSEVVPENERDPLLRDKI 664 Query: 649 TKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWI--------DDC 700 + L + + + +A + ++GTD + D Sbjct: 665 AAELPVIIRQLLHRFADPQTARRLLAEQQKSEEALDI-KRGTDPLVDFCGYLVASHETDG 723 Query: 701 CDIGENL---WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIE 757 IG + L +Y Y + N K +S +++ G + + + Sbjct: 724 LLIGNAEIVPFNPRKYLYHAYLAYMK--GNNLNKPVSVTRFGMDMP--GALAEYNQHYLR 779 Query: 758 KEWKSK 763 K+ K Sbjct: 780 KKSKQG 785 >gi|260855418|ref|YP_003229309.1| putative DNA primase [Escherichia coli O26:H11 str. 11368] gi|257754067|dbj|BAI25569.1| putative DNA primase [Escherichia coli O26:H11 str. 11368] Length = 605 Score = 139 bits (349), Expect = 2e-30, Method: Composition-based stats. Identities = 73/541 (13%), Positives = 162/541 (29%), Gaps = 86/541 (15%) Query: 267 YKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYN----KAMFSIYKKG 322 W + E G+ +K++ ++ + + + + + Y Sbjct: 112 ENWREYLERERGELTEKKNVVELPVKKKERVKDDNASSLALNQMGASQRGEVLLAHYGGE 171 Query: 323 HFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKS 382 + D + V+ ++ + + +D Sbjct: 172 LAI---------HADSDTVHYYNGVVWEP---------------------VQDKELQRAM 201 Query: 383 PRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQ 442 + + + + S + SL +++ +G +G+ D TG Sbjct: 202 AQIFIDAEISYSQNAIKSAVDTMKLSLPVMG---------NTARNLIGFSNGVFDTRTGD 252 Query: 443 KVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVS-GYFESEEVMDYFTRCVGMAL 494 + K ++ ++ PF + F + E++ D + M L Sbjct: 253 FREHNKNDWLLIASELPFSPPAEGETLATHAPNFWKWLRRSVAENDRKADRVLAALFMVL 312 Query: 495 LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLI 554 Q FI + G GGSGKS + + G ++A + R Sbjct: 313 ANRYDWQLFIEVTGPGGSGKSVMAEICTMLAGKANTVSASMKALEDAR---------ERA 363 Query: 555 RLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHL 614 ++G ++I+ + A IK +TGGD + + YS V N + Sbjct: 364 LVVGFSLIIMPDMTRYAGDGAG-IKAITGGDKVAIDPKHKAPYST-RIQAVVLAVNNNAM 421 Query: 615 FVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLD 672 + RR ++ F + + RD A+K+E + L + Sbjct: 422 SFSDRSGGISRRRVIFNFSEVVPENERDPMLAEKIE-GELAVVIRHLLTRFSDQDAAKRL 480 Query: 673 VDIPEVCLKAKEEERQGTDTYQAW--------IDDCCDIGENL---WEESHSLAKSYSEY 721 + + +A ++ D+ + + D +G + L +Y Y Sbjct: 481 LYEQQKSEEALVI-KREGDSLVDFCGYLMSSVMCDGLLVGNAEIIPFSPRRYLYHAYLAY 539 Query: 722 REQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDN 781 K ++ ++ G + RE ++++ K GL+ ++ Sbjct: 540 MRAHGFG--KPVTLTRFGKDMP--GAMAEYGREYMKRKTKH-----GLRSNVTLTEESED 590 Query: 782 S 782 Sbjct: 591 W 591 >gi|227329979|ref|ZP_03834003.1| hypothetical protein PcarcW_22648 [Pectobacterium carotovorum subsp. carotovorum WPP14] Length = 452 Score = 139 bits (349), Expect = 2e-30, Method: Composition-based stats. Identities = 54/352 (15%), Positives = 109/352 (30%), Gaps = 46/352 (13%) Query: 364 EDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLD 423 E F + R + Q S S +L+ Sbjct: 99 ETFFQYQNGAWKVLPHRLLSRDIAALFQKIQAPFTASGIDSVINTLKLIVPMQAEP---- 154 Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEG-------EPSQEFLDLVSGY 476 R +G ++G+ D +G+ +E ++ + + + F ++ Sbjct: 155 -QRRLIGFRNGVFDTVSGEFKPHRREHWLHTVNDVDYTPFKAGENLADNAPHFWRWLTRA 213 Query: 477 FES-EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535 + + + + M L Q F+ + G GGSGKS L + G+ A Sbjct: 214 AGNHPDKQERILAALFMVLANCYDWQLFLEVTGPGGSGKSILAEIAIMLAGDDNATAATI 273 Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595 + I +R + ++G ++++ + + A IK +TGGD + Y + Sbjct: 274 NTIESSRERSS---------IIGFSLIVLPDQEKWSGDGAG-IKAITGGDAVMVDPKYRD 323 Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTL 653 YS + + N + + RR ++I F + I RD +K+ Sbjct: 324 AYSTRIPAVILAV-NNSPMRFSDRSGGVSRRRVIIHFGETIPASERDPKLKEKI-RTELA 381 Query: 654 EAKKWFLKGVKAYISKGLDVDIPEVCLKAKE---------EERQGTDTYQAW 696 + +K P + E ++ D + Sbjct: 382 VIVRHLMK----------RFADPNDARTLLQAQQHSAEALEIKRQADPLVDF 423 >gi|325578236|ref|ZP_08148371.1| bacteriophage P4 DNA primase [Haemophilus parainfluenzae ATCC 33392] gi|325159972|gb|EGC72101.1| bacteriophage P4 DNA primase [Haemophilus parainfluenzae ATCC 33392] Length = 589 Score = 139 bits (349), Expect = 2e-30, Method: Composition-based stats. Identities = 76/430 (17%), Positives = 136/430 (31%), Gaps = 56/430 (13%) Query: 368 DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSS- 426 DL+ P+D W D + + A SI SI + S Sbjct: 169 DLALNPKDRELYRYDGISWQLVDKFEFLDNAVTFFDEQDFNYSARSIESIIDTIKIQSPK 228 Query: 427 ------RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPS-QEFLDLVSGYFES 479 + +G L+ T + + +E ++ ++ + F + Sbjct: 229 MGTQVQELIAFNNGTLNRTTLEFLPHYRENWLMSYIPHEYLNSAQNTPYFDKWLEFVSGG 288 Query: 480 EE-VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538 +E + + L N Q F + G GGSGKS N+ G Q + D+ Sbjct: 289 KENKKNAILAALYAVLTNRNDWQLFFEVTGDGGSGKSVFANIATLLAGAQNTESGRLVDL 348 Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598 + R E+ +G ++I E + + +K +TGGD + + + Sbjct: 349 DEPRGRES---------FVGKTLLICPEQSRYGG-DGGGLKSITGGDPVNIDPKHRTKFK 398 Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAK 656 S IV N+ RR ++ FDK + RD +F K+E Sbjct: 399 AVI-SAVVLIVNNEATRFTERSGGIERRRVIFHFDKVVPENERDPNFMDKIER-EVGGII 456 Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWI--------DD 699 + + PE A +E+ + +D + +D Sbjct: 457 YKLIH----------TFEQPETAKAALKEQQTSDEALEIKSESDHITEFCGYFYTTPQND 506 Query: 700 CCDIGENLW--EESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIE 757 IG + L +Y + ++ R + +LKQ GF K + Sbjct: 507 GLYIGNANQGNKSRTHLYPAYLAFAVASG--ITNTLTLRNFSNSLKQ-GF-AQHKNKFEF 562 Query: 758 KEWKSKRIIK 767 + K K + Sbjct: 563 SKIKGKYGYR 572 >gi|81428210|ref|YP_395210.1| putative prophage lsa1 DNA primase [Lactobacillus sakei subsp. sakei 23K] gi|78609852|emb|CAI54899.1| Putative prophage lsa1 DNA primase [Lactobacillus sakei subsp. sakei 23K] Length = 497 Score = 138 bits (348), Expect = 3e-30, Method: Composition-based stats. Identities = 51/371 (13%), Positives = 109/371 (29%), Gaps = 24/371 (6%) Query: 382 SPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETG 441 + + +VE N + S S+L D + +G+ + T Sbjct: 88 YMKDKQLINRLILSVERNLNMRQCRDVYFYLETDSKRSNLSDR-KELIIVNNGVFNKNTK 146 Query: 442 QKVKPTKELYITKSTGTPFVEGEPSQ-----EFLDLVSGYF-ESEEVMDYFTRCVGMALL 495 + T + T + F V+ + + + A+ Sbjct: 147 ELEPFTPDHVFISKISTNYNPNAKEPTMQGWRFSKWVTELSDGQRDKETLIWQMIASAVN 206 Query: 496 GGNKAQRFIHIR--GVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL 553 + + G G +GK TL ++ G Q + + + + L Sbjct: 207 ANYSPETAFFLIDDGRGHTGKGTLQQILINLVGEQNCASLKLKEFDE---------RFKL 257 Query: 554 IRLMGSRIVIISETNENDEINA-AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612 + G +VI + + N +++ A K +T GD ++ + + T N Sbjct: 258 ATIFGKALVIGDDNDPNSYVDSVANFKSVTTGDVVSVESKGVDA-LSIRMTPTIIQSMNG 316 Query: 613 HLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLD 672 ++ + RR I + + K + Y + ++ L KA Sbjct: 317 APKFKDITGGFKRRLRAIKMLHQYDTSNVNRDIKDKYIYDNQVLEYIL--FKALQIDLDT 374 Query: 673 VDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKR 732 + + E D+ + + + L + + + +N + Sbjct: 375 IIETTESNQTIYEIALDNDSILDFFESEIVELSSTRLPITYLFNLFRCWCD--INNSPTK 432 Query: 733 ISTRTVTLNLK 743 I RT T L Sbjct: 433 IKQRTFTTRLI 443 >gi|213423871|ref|ZP_03356851.1| hypothetical protein Salmonentericaenterica_41108 [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 401 Score = 138 bits (348), Expect = 3e-30, Method: Composition-based stats. Identities = 46/235 (19%), Positives = 80/235 (34%), Gaps = 21/235 (8%) Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478 R +G ++G+LD + G + ++ F + F + Sbjct: 137 RRLIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVEGETLETHAPAFWRWLDRAAG 196 Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537 E D + M L Q F+ + G GGSGKS + + G +A Sbjct: 197 GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIET 256 Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597 + R L G ++ + + + A +K +TGGD ++ Y + Y Sbjct: 257 LESPR---------ERAALTGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYRDAY 306 Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETK 650 S V N + + RR ++I F + IA RD K+ + Sbjct: 307 STHIP-AVILAVNNNPMRFTDRSGGVSRRRVIIHFPEQIAPQERDPQLKDKITRE 360 >gi|315640374|ref|ZP_07895489.1| DNA primase [Enterococcus italicus DSM 15952] gi|315483879|gb|EFU74360.1| DNA primase [Enterococcus italicus DSM 15952] Length = 512 Score = 138 bits (348), Expect = 3e-30, Method: Composition-based stats. Identities = 51/333 (15%), Positives = 101/333 (30%), Gaps = 22/333 (6%) Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDL-VSGYF----- 477 + + +GI + T + + E T +VE F D S + Sbjct: 137 NDKNLVVVNNGIFNRSTKRLEPFSSEYVFVNKVATNYVENAKEPHFKDWNFSEWVKELSD 196 Query: 478 ESEEVMDYFTRCVGMALLGGN-KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEAS 536 + + +A+ + G +GKST L+ G + + Sbjct: 197 GNPSKETLLWQMFSVAVNANYISEVAVFFLSEQGRTGKSTFQQLMVNLVGRHNTASLKIK 256 Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK-IKQMTGGDCMTARLNYGN 595 + + L G +VI + N D ++ K + GD + Sbjct: 257 EFESD---------FKLASAYGRSLVIGDDNNPKDFNETSENFKSVVTGDSVLLNPKGKE 307 Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655 +S F N ++ D RR V+ F+ + K + Y + Sbjct: 308 PFSTKLTPF-VIQSMNGLPRFKDITDGLQRRLRVVLFNHSYKGDKNNRLIKEKYIYDSQL 366 Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLA 715 ++ L V + ++ +A E ++ +D E+ L Sbjct: 367 LEYILSKVINMEFEEVEDTE--ESRQAIHELVLENSAVLSFFEDKFLELESERLPVKFLF 424 Query: 716 KSYSEYREQELNYD--RKRISTRTVTLNLKQKG 746 K + + E E R+R T+ +++ G Sbjct: 425 KYFQAWCEHENQPTNMRQRTFTKEFRSIVERNG 457 >gi|168798600|ref|ZP_02823607.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC508] gi|189378766|gb|EDU97182.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC508] Length = 608 Score = 138 bits (348), Expect = 3e-30, Method: Composition-based stats. Identities = 71/541 (13%), Positives = 160/541 (29%), Gaps = 86/541 (15%) Query: 267 YKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYN----KAMFSIYKKG 322 W + E + A+K+ ++ + + + + + Y Sbjct: 115 ENWREYLERERAEQAEKKKVVELPVKKKERVKDDNASSLALNQMGASQRGEVLLAHYGGE 174 Query: 323 HFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKS 382 + D + V+ ++ + + +D Sbjct: 175 LAI---------HADSDTVHHYNGVVWEP---------------------VQDKELQRAM 204 Query: 383 PRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQ 442 + + + + S + SL +++ +G +G+ D TG Sbjct: 205 AQIFIDAEISYSQNAIKSAVDTMKLSLPVMG---------NTARNLIGFSNGVFDTRTGN 255 Query: 443 KVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVS-GYFESEEVMDYFTRCVGMAL 494 + K ++ ++ PF + F + E++ D + M L Sbjct: 256 FREHNKNDWLLIASELPFSPPAEGETLATHAPNFWKWLRRSVAENDRKADRVLAALFMVL 315 Query: 495 LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLI 554 Q FI + G GGSGKS + + G ++A + R Sbjct: 316 ANRYDWQLFIEVTGPGGSGKSVMAEICTMLAGKANTVSASIKALEDAR---------ERA 366 Query: 555 RLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHL 614 ++G ++I+ + A IK +TGGD + + YS + + N + Sbjct: 367 LVVGFSLIILPDMTRYAGDGAG-IKAITGGDKVAIDPKHKAPYSTRIPAVVLAV-NNSAM 424 Query: 615 FVRNPDDAWWRRYIVIPFDKPIAN--RDASFAQKLETKYTLEAKKWFLKGVKAYISKGLD 672 + RR ++ F + + RD +K+E + L Sbjct: 425 SFSDRSGGISRRRVIFNFSEVVPENERDPMLPEKIE-GELAVVIRHLLTRFADQDEARRL 483 Query: 673 VDIPEVCLKAKEEERQGTDTYQAW--------IDDCCDIGENL---WEESHSLAKSYSEY 721 + + +A ++ D+ + + D +G + L +Y Y Sbjct: 484 LYEQQKSEEALAI-KREGDSLVDFCGYLMSSVMCDGLLVGNAEIVPFSPRRYLYHAYLAY 542 Query: 722 REQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDN 781 K ++ ++ G + RE ++K K +G++ ++ Sbjct: 543 MRAHGFG--KPVTLTRFGADMP--GAMAEYGREYMKKRTK-----EGVRSNVILTDESED 593 Query: 782 S 782 Sbjct: 594 W 594 >gi|294637020|ref|ZP_06715338.1| putative P4-specific DNA primase [Edwardsiella tarda ATCC 23685] gi|291089789|gb|EFE22350.1| putative P4-specific DNA primase [Edwardsiella tarda ATCC 23685] Length = 774 Score = 138 bits (348), Expect = 3e-30, Method: Composition-based stats. Identities = 63/433 (14%), Positives = 129/433 (29%), Gaps = 65/433 (15%) Query: 364 EDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLD 423 + + + R R ++K S ++L+ I + Sbjct: 351 QLLSRYEAGAWKVIYYADFARDVAALFQRLDAPFSSAKIASLVETLK-----LIVPQQQN 405 Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGY 476 + + +G ++G+LD TG K+ ++ + + + F + Sbjct: 406 PARQLIGFRNGVLDTRTGLFSPHDKKHWLRTLCEVDYTQPVDGESLETHAPAFWRWLDRA 465 Query: 477 FE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535 + E D + M Q F+ + G GGSGKS L + G +A Sbjct: 466 AGFNPEKRDIILAALFMVQANRYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNATSATI 525 Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595 + R L+G ++ + + + A +K +TGGD ++ Y N Sbjct: 526 EMLESPR---------ERAALIGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYQN 575 Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTL 653 YS + + N + + RR +++ F I RD +K+ Sbjct: 576 AYSTHIPAVILAV-NNNPMRFTDRSGGVSRRRVILHFPDQIAPEERDTQLKEKI-ASELA 633 Query: 654 EAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGT----------------------- 690 + ++ P + ++ Sbjct: 634 VIVRQLMQ----------RFSDPMSARTLLQSQQNSDEALTIKRDADSAFDFCGYLKVLP 683 Query: 691 DTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQEL--NYDRKRISTRTVTLNLKQKGFI 748 DT ++ + + + L +Y Y E N + + + L LK+ G Sbjct: 684 DTSGMFMGNANIV---PRQPRTYLYHAYLVYMEANGYKNTLSLTMFGKGLPLMLKEYGLQ 740 Query: 749 GGIKREKIEKEWK 761 +R + Sbjct: 741 YEKRRTNQGMQTN 753 >gi|323968126|gb|EGB63536.1| phage/plasmid primase [Escherichia coli M863] Length = 584 Score = 138 bits (346), Expect = 4e-30, Method: Composition-based stats. Identities = 64/365 (17%), Positives = 119/365 (32%), Gaps = 55/365 (15%) Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE- 478 L +G LDL+TG+ T E +IT G + P + F + Sbjct: 228 DLLPFANGALDLKTGEFSPHTPENWITTHNGIEYTPPAPGENIRDNAPNFHKWLEHVAGK 287 Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538 M + M + Q FI G GGSGKST ++ G Q ++AE + + Sbjct: 288 DPRKMMRICAALYMIMANRYDWQMFIEATGDGGSGKSTFTHIASLLAGKQNTVSAEMTSL 347 Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598 +++GSR++++++ + IK++TGGD + Y ++ Sbjct: 348 DDAGGR---------AQVVGSRLIVLADQPKYTGEGTG-IKKITGGDPVEINPKYEKRFT 397 Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAK 656 N + RR I+ FD ++ +D +K+ Sbjct: 398 AVI-RAVVLATNNNPMIFTERAGGVSRRRIIFRFDNIVSEAEKDRELPEKI-AAEIPVII 455 Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEER---------QGTDTYQA------WIDDCC 701 + L + PE E+R Q TD ++++ Sbjct: 456 RRLLA----------NFTDPEKARALLLEQRDGDEALAIKQQTDPVIEFCQFLNFLEEAR 505 Query: 702 DI------GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755 + + +SL + Y + K ++ +K + G K Sbjct: 506 GLMMGGGGDSVKYTTRNSLYRVYLAFMAYAGRS--KPLNVNDFGKAMKPAAKVYGHKYIT 563 Query: 756 IEKEW 760 + + Sbjct: 564 RKVKG 568 >gi|300722921|ref|YP_003712217.1| putative P4-specific DNA primase [Xenorhabdus nematophila ATCC 19061] gi|297629434|emb|CBJ90035.1| putative P4-specific DNA primase [Xenorhabdus nematophila ATCC 19061] Length = 777 Score = 138 bits (346), Expect = 5e-30, Method: Composition-based stats. Identities = 61/426 (14%), Positives = 133/426 (31%), Gaps = 43/426 (10%) Query: 359 LVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSIT 418 L E V + R + S +L+ Sbjct: 347 LDGASETVHHYDGIIWRPVSDRDLRREMVAAFMEGKLPYSPHGINSAVDALKLQLPMMQP 406 Query: 419 SDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVE-------GEPSQEFLD 471 + +G +G+ DL+T Q K ++ + F + +++F Sbjct: 407 PE-----RHLIGFNNGVFDLKTCQFRSHCKNNWLLLANDVEFNSPVSGETLKDHARQFWR 461 Query: 472 LVSGYFESEEVMDY-FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530 ++ + E Y + M L Q F+ + GVGGSGKS + G Sbjct: 462 WLNQATANCENKAYRVLAALFMVLANRYDWQLFLEVTGVGGSGKSIFAEICSMLAGKGNT 521 Query: 531 INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK-IKQMTGGDCMTA 589 ++A + + R + ++G ++I+ ++ + IK +TGGD + Sbjct: 522 VSASMATLENPR---------ERVLIVGYSLIIL--PDQTRYVGDGSGIKAITGGDEVAI 570 Query: 590 RLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDAS-FAQKLE 648 + YS + + N + + RR ++ F + + + + Sbjct: 571 DPKHKQPYSTRIPAVVLAV-NNNAMSFSDRSGGVSRRRVIFNFSEVVPENERDPLLRDKI 629 Query: 649 TKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAW---------IDD 699 + L + + + +A + ++GTD + +D Sbjct: 630 AAELPVIIRHLLHRFVDPQTARRLLAEQQKSAEALDI-KRGTDPLVDFCGYLIASHEVDG 688 Query: 700 CCDIGENL--WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIE 757 + + L +Y Y + N K +S +++ G + ++ + Sbjct: 689 LLIGNAEIMPFNPRKYLYHAYLAYMK--GNNLNKPVSVTRFGMDMP--GALAEYSQQYLR 744 Query: 758 KEWKSK 763 K+ K Sbjct: 745 KKSKQG 750 >gi|218690979|ref|YP_002399191.1| putative DNA primase from prophage [Escherichia coli ED1a] gi|218428543|emb|CAR09471.2| putative DNA primase from prophage (possibly fragment) [Escherichia coli ED1a] Length = 606 Score = 138 bits (346), Expect = 5e-30, Method: Composition-based stats. Identities = 63/422 (14%), Positives = 133/422 (31%), Gaps = 43/422 (10%) Query: 363 KEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLL 422 + V + ++ + R + KS +++ Sbjct: 179 SDTVHYYNGVIWSPVQDKELQRTMAQIFIDEDICYSQNAIKSAVDTMKLSLPVMG----- 233 Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVS- 474 +++ +G +G+ D TG + K+ ++ ++ PF + F + Sbjct: 234 NTARHLIGFSNGVFDTRTGDFREHDKDDWLLIASELPFTPPAEGETLATHAPNFWKWLRR 293 Query: 475 GYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534 E++ D + M L Q FI + G GGSGKS + + G ++A Sbjct: 294 SVAENDRKADRVLAALFMVLANRYDWQLFIEVTGPGGSGKSVMAEICTMLAGKANTVSAS 353 Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594 + R ++G ++I+ + A IK +TGGD + + Sbjct: 354 MKALEDAR---------ERALVVGFSLIILPDMTRYAGDGAG-IKAITGGDKVAIDPKHK 403 Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDASFAQKLETKYT 652 YS + + N + + RR ++ F + + RD +K+E Sbjct: 404 APYSTRIPAVVLAV-NNSAMSFSDRSGGISRRRVIFNFSEVVPENERDPMLPEKIE-GEL 461 Query: 653 LEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAW--------IDDCCDIG 704 + L + + +A ++ D+ + + D +G Sbjct: 462 AVVIRHLLTRFSDQDEARRLLHEQQKSEEALAI-KREGDSLVDFCGYLMSSVMCDGLLVG 520 Query: 705 ENL---WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWK 761 + L +Y Y K ++ ++ G + RE ++K K Sbjct: 521 NAEIIPFSPRRYLYHAYLSYMRAHGFS--KPVTLTRFGADMP--GAMAEYGREYMKKRTK 576 Query: 762 SK 763 Sbjct: 577 EG 578 >gi|330910991|gb|EGH39501.1| DNA primase , phage-associated / Replicative helicase RepA [Escherichia coli AA86] Length = 606 Score = 137 bits (345), Expect = 7e-30, Method: Composition-based stats. Identities = 65/441 (14%), Positives = 142/441 (32%), Gaps = 48/441 (10%) Query: 363 KEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLL 422 + V + + ++ + R + + KS +++ Sbjct: 179 SDTVHHYNGVVWEPVQDKELQRAMAQIFIDAEISYSQNAIKSAVDTMKLSLPVMG----- 233 Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVS- 474 +++ +G +G+ D TG + K ++ ++ PF + F + Sbjct: 234 NTARNLIGFSNGVFDTRTGNFREHNKNDWLLIASELPFSPPAEGETLATHAPNFWKWLRR 293 Query: 475 GYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534 E++ D + M L Q FI + G GGSGKS + + G ++A Sbjct: 294 SVAENDRKADRVLAALFMVLANRYDWQLFIEVTGPGGSGKSVMAEICTMLAGKANTVSAS 353 Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594 + R ++G ++I+ + A IK +TGGD + + Sbjct: 354 MKALEDAR---------ERALVVGFSLIIMPDMTRYAGDGAG-IKAITGGDKVAIDPKHK 403 Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYT 652 YS + + N + + RR ++ F + + RD+ A+K+E Sbjct: 404 APYSTRIPAVVLAV-NNNAMSFSDRSGGISRRRVIFNFSEVVPENERDSMLAEKIE-GEL 461 Query: 653 LEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAW--------IDDCCDIG 704 + L + + +A ++ D+ + + D +G Sbjct: 462 AVVIRHLLTRFADQDEARRLLYEQQKSEEALAI-KREGDSLVDFCGYLMASVMCDGLLVG 520 Query: 705 ENL---WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWK 761 + L +Y Y K ++ ++ G + RE ++++ K Sbjct: 521 NAEIVPFSPRRYLYHAYLAYMRAHGFG--KPVTLTRFGKDMP--GAMAEYGREYMKRKTK 576 Query: 762 SKRIIKGLKLKPAFESVDDNS 782 GL+ ++ Sbjct: 577 H-----GLRSNVTLTEESEDW 592 >gi|291335467|gb|ADD95079.1| hypothetical protein [uncultured phage MedDCM-OCT-S04-C348] Length = 391 Score = 137 bits (344), Expect = 8e-30, Method: Composition-based stats. Identities = 49/356 (13%), Positives = 107/356 (30%), Gaps = 45/356 (12%) Query: 444 VKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQR 502 + ++ Y+ + + + + + + + + L+G + Q+ Sbjct: 1 MPFQRDFYLIQLLPYDYNPNAECETIIKWLKFTQDGNWGRVQVLRAWLRAVLMGASDIQK 60 Query: 503 FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIV 562 F+ I G G SGKST NL G++ + + +NR L +++ Sbjct: 61 FVEIVGPGKSGKSTYANLCNALVGDENTTISTLEHLEKNR--------FETANLYKKKLL 112 Query: 563 IISETNENDEINAAKIKQMTGGDCMTARLNYGN-TYSESPASFTPFIVPNKHLFVRNPDD 621 + ++ + + +K +TG D + Y I N+ + +P Sbjct: 113 LFNDVERYGG-SVSILKALTGRDLLRNEHKYQAGKQKPFKFDGLCMITANEPIQTTDPTS 171 Query: 622 AWWRRYIVIPFDKPI---ANRDASFAQK--------LETKYTLEAKKWFLKGVKAYISKG 670 RR + IPF+ P A + W L + + Sbjct: 172 GLARRRLTIPFNNPFRGSAKEQKTLIDMDDQGNAFGEFAPLLPGLVNWLLDMSHDQMREY 231 Query: 671 LDVDIPEVCL---KAKEEERQGTDTYQAWIDDCCDIGEN-----------------LWEE 710 L + +++ ++ + W+ C N + + Sbjct: 232 LMETT-KHVKFFADYTIDQQLKSNPVKDWMHHCLVFELNTSSQIGFKKFAPQGSSTHYAK 290 Query: 711 SHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRII 766 ++ Y+ Y E +N + +S L ++ K RI Sbjct: 291 TNEW--LYASYCEFCMNSNNNIMSRSRFESLLMDIFNHQLHLNIYAKRNTKGLRIF 344 >gi|323179375|gb|EFZ64942.1| poxvirus D5 protein-like family protein [Escherichia coli 1180] Length = 608 Score = 137 bits (344), Expect = 8e-30, Method: Composition-based stats. Identities = 71/541 (13%), Positives = 160/541 (29%), Gaps = 86/541 (15%) Query: 267 YKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYN----KAMFSIYKKG 322 W + E + A+K+ ++ + + + + + Y Sbjct: 115 ENWREYLERERAEQAEKKKVVELPVKKKERVKDDNASSLALNQMGASQRGEVLLAHYGGE 174 Query: 323 HFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKS 382 + D + V+ ++ + + +D Sbjct: 175 LAI---------HADSDTVHHYNSVVWEP---------------------VQDKELQRAM 204 Query: 383 PRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQ 442 + + + + S + SL +++ +G +G+ D TG Sbjct: 205 AQIFIDAEISYSQNAIKSAVDTMKLSLPVMG---------NTARNLIGFSNGVFDTRTGN 255 Query: 443 KVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVS-GYFESEEVMDYFTRCVGMAL 494 + K ++ ++ PF + F + E++ D + M L Sbjct: 256 FREHNKNDWLLIASELPFSPPAEGETLATHAPNFWKWLRRSVAENDRKADRVLAALFMVL 315 Query: 495 LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLI 554 Q FI + G GGSGKS + + G ++A + R Sbjct: 316 ANRYDWQLFIEVTGPGGSGKSVMAEICTMLAGKANTVSASMKALEDAR---------ERA 366 Query: 555 RLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHL 614 ++G ++I+ + A IK +TGGD + + YS + + N + Sbjct: 367 LVVGFSLIILPDMTRYAGDGAG-IKAITGGDKVAIDPKHKAPYSTRIPAVVLAV-NNSAM 424 Query: 615 FVRNPDDAWWRRYIVIPFDKPIAN--RDASFAQKLETKYTLEAKKWFLKGVKAYISKGLD 672 + RR ++ F + + RD +K+E + L Sbjct: 425 SFSDRSGGISRRRVIFNFSEVVPENERDPMLPEKIE-GELAVVIRHLLTRFADQDEARRL 483 Query: 673 VDIPEVCLKAKEEERQGTDTYQAW--------IDDCCDIGENL---WEESHSLAKSYSEY 721 + + +A ++ D+ + + D +G + L +Y Y Sbjct: 484 LYEQQKSEEALAI-KREGDSLVDFCGYLMSSVMCDGLLVGNAEIIPFSPRRYLYHAYLSY 542 Query: 722 REQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDN 781 K ++ ++ G + RE ++K K +G++ ++ Sbjct: 543 MRAHGFS--KPVTLTRFGADMP--GAMAEYGREYMKKRTK-----EGVRSNVILTDESED 593 Query: 782 S 782 Sbjct: 594 W 594 >gi|312945751|gb|ADR26578.1| putative DNA primase from prophage [Escherichia coli O83:H1 str. NRG 857C] Length = 606 Score = 137 bits (344), Expect = 8e-30, Method: Composition-based stats. Identities = 65/441 (14%), Positives = 142/441 (32%), Gaps = 48/441 (10%) Query: 363 KEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLL 422 + V + + ++ + R + + KS +++ Sbjct: 179 SDTVHHYNGVVWEPVQDKELQRAMAQIFIDAEISYSQNAIKSAVDTMKLSLPVMG----- 233 Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVS- 474 +++ +G +G+ D TG + K ++ ++ PF + F + Sbjct: 234 NTARNLIGFSNGVFDTRTGNFREHNKNDWLLIASELPFSPPAEGETLATHAPNFWKWLRR 293 Query: 475 GYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534 E++ D + M L Q FI + G GGSGKS + + G ++A Sbjct: 294 SVAENDRKADRVLAALFMVLANRYDWQLFIEVTGPGGSGKSVMAEICTMLAGKANTVSAS 353 Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594 + R ++G ++I+ + A IK +TGGD + + Sbjct: 354 MKALEDAR---------ERALVVGFSLIIMPDMTRYAGDGAG-IKAITGGDKVAIDPKHK 403 Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYT 652 YS + + N + + RR ++ F + + RD+ A+K+E Sbjct: 404 APYSTRIPAVVLAV-NNNAMSFSDRSGGISRRRVIFNFSEVVPENERDSMLAEKIE-GEL 461 Query: 653 LEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAW--------IDDCCDIG 704 + L + + +A ++ D+ + + D +G Sbjct: 462 AVVIRHLLTRFADQDEARRLLYEQQKSEEALAI-KREGDSLVDFCGYLMASVMCDGLLVG 520 Query: 705 ENL---WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWK 761 + L +Y Y K ++ ++ G + RE ++++ K Sbjct: 521 NAEIVPFSPRRYLYHAYLAYMRAHGFG--KPVTLTRFGKDMP--GAMAEYGREYMKRKTK 576 Query: 762 SKRIIKGLKLKPAFESVDDNS 782 GL+ ++ Sbjct: 577 H-----GLRSNVTLTEESEDW 592 >gi|238753953|ref|ZP_04615313.1| P4-specific DNA primase [Yersinia ruckeri ATCC 29473] gi|238707941|gb|EEQ00299.1| P4-specific DNA primase [Yersinia ruckeri ATCC 29473] Length = 777 Score = 136 bits (343), Expect = 1e-29, Method: Composition-based stats. Identities = 64/431 (14%), Positives = 127/431 (29%), Gaps = 68/431 (15%) Query: 350 KITASIMNFLV---SMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTA 406 ++ A L+ + ED+ + R + + S S Sbjct: 340 ELLAEHYQHLLAVPQVGEDLCRYEKGAWQVLPYRVLSREIAALFQKIRAPFSASGINSVL 399 Query: 407 QSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEG--- 463 +L+ T +G ++G+ D TGQ K ++ + Sbjct: 400 DTLKLMVPQMGTPA-----RHLIGFRNGVFDTTTGQFSAHQKTHWLRTVNSVDYTPPKAG 454 Query: 464 ----EPSQEFLDLVSGYFESE-EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLM 518 + + F ++ + E + + M L Q F+ + G GGSGKS + Sbjct: 455 ENLSDHAPHFWRWLTRAAGQQHEKQERILAALYMVLANRYDWQLFLEVTGPGGSGKSVMA 514 Query: 519 NLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKI 578 ++ G +A + +R ++G ++I+ + A I Sbjct: 515 SIASLLAGKDNTTSATIDTLESSR---------ERASVVGFSLIILPDQERWSGDGAG-I 564 Query: 579 KQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA- 637 K +TGGD + Y + YS V N + + RR +++PF + I Sbjct: 565 KAITGGDAVAIDPKYRDAYSTHIP-AVILAVNNNPMQFSDRSGGVSRRRVILPFPEVIPA 623 Query: 638 -NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQG------- 689 RD K+ ++ + P E ++ Sbjct: 624 NERDPQLLAKIT-----GELAVMVRHLMQ------RFIAPNDARALLEAQQNSDEALEIK 672 Query: 690 --TDTYQAWIDDC-----CDIGENLW---------EESHSLAKSYSEYREQELNYDRKRI 733 D + C + L+ L +Y + E + ++ + Sbjct: 673 RGADPLVDF---CGYLLAVNTPNGLYMGNANIIPANPRKYLYHAYLSFMEARGH--QRPM 727 Query: 734 STRTVTLNLKQ 744 S + Q Sbjct: 728 SLTAFGRAVPQ 738 >gi|213613130|ref|ZP_03370956.1| bacteriophage P4 DNA primase [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 649 Score = 136 bits (343), Expect = 1e-29, Method: Composition-based stats. Identities = 47/235 (20%), Positives = 81/235 (34%), Gaps = 21/235 (8%) Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478 R +G ++G+LD TG K ++ F + F + Sbjct: 411 RRLIGFRNGVLDTATGTFSPHHKSHWLRTLCDVDFTSPVEGETLETHAPHFWRWLDRAAG 470 Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537 E D + M L Q F+ + G GGSGKS L + G +A Sbjct: 471 GKPEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNATSATIET 530 Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597 + R L+G ++ + + + A +K +TGGD ++ Y + Y Sbjct: 531 LESPR---------ERAALIGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYKDAY 580 Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETK 650 S + + N + + RR ++I F + I RD K+ + Sbjct: 581 STHIPAVILAV-NNNPMRFTDRSGGVSRRRVIIHFPEQIAPEERDPQLRDKIARE 634 >gi|304398649|ref|ZP_07380521.1| P4 alpha zinc-binding domain protein [Pantoea sp. aB] gi|304353860|gb|EFM18235.1| P4 alpha zinc-binding domain protein [Pantoea sp. aB] Length = 771 Score = 136 bits (341), Expect = 2e-29, Method: Composition-based stats. Identities = 56/371 (15%), Positives = 118/371 (31%), Gaps = 62/371 (16%) Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478 R +G ++G+ D TG +E ++ + P + F ++ Sbjct: 409 RRLIGFRNGVYDTTTGTFGPHRRENWLRTVNSVDYSAPRPGENLADHAPYFYRWLTRAAG 468 Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537 + + + + M L Q F+ + G GGSGKS + ++ G +A Sbjct: 469 HNHDKQERILAALFMVLANRYDWQMFLEVTGPGGSGKSVMASIATLLAGKDNTTSATIDT 528 Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597 + +R ++G ++I+ + + A IK +TGGD + Y + Y Sbjct: 529 LESSR---------ERASVVGFSLIILPDQEKWSGDGAG-IKAITGGDAVAIDPKYRDAY 578 Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655 S V N + + RR +++ F + I RD K+ T Sbjct: 579 STHIP-AVILAVNNNPMRFSDRSGGVSRRRVILTFPEVIPAKERDPQLLDKVST-ELAVI 636 Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKE---------EERQGTDTYQAWIDDC-----C 701 + ++ P+ + + E ++ D + C Sbjct: 637 VRHLMQ----------RFASPDEARELLQAQQSSGEALEIKRQADPLVDF---CGYLMPL 683 Query: 702 DIGENLWE---------ESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIK 752 L+ L +Y + E + + +S + Q + + Sbjct: 684 STPNGLFIGNANIRPINPKRYLYHAYLSFMESRGH--QHPLSLTAFGQAVPQT--LKEYE 739 Query: 753 REKIEKEWKSK 763 R +++ + Sbjct: 740 RVLLKRRTNNG 750 >gi|168759751|ref|ZP_02784758.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC4501] gi|217324190|ref|ZP_03440274.1| nucleoside triphosphatase, D5 family [Escherichia coli O157:H7 str. TW14588] gi|189369456|gb|EDU87872.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC4501] gi|217320411|gb|EEC28835.1| nucleoside triphosphatase, D5 family [Escherichia coli O157:H7 str. TW14588] Length = 607 Score = 136 bits (341), Expect = 2e-29, Method: Composition-based stats. Identities = 60/381 (15%), Positives = 125/381 (32%), Gaps = 43/381 (11%) Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVS- 474 +++ +G +G+ D TG + K ++ ++ PF + F + Sbjct: 235 NTARNLIGFSNGVFDTRTGDFREHDKNDWLLIASELPFTPPAEGETLATHAPNFWKWLRR 294 Query: 475 GYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534 E++ D + M L Q FI + G GGSGKS + + G ++A Sbjct: 295 SVAENDRKADRVLAALFMVLANRYDWQLFIEVTGPGGSGKSVMAEICTMLAGKANTVSAS 354 Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594 + R ++G ++I+ + A IK +TGGD + + Sbjct: 355 MKALEDAR---------ERALVVGFSLIILPDMTRYAGDGAG-IKAITGGDKVAIDPKHK 404 Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDASFAQKLETKYT 652 YS + + N + + RR ++ F + + RD +K+E Sbjct: 405 APYSTRIPAVVLAV-NNSAMSFSDRSGGISRRRVIFNFSEVVPENERDPMLPEKIE-GEL 462 Query: 653 LEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAW--------IDDCCDIG 704 + L + + +A ++ D+ + + D +G Sbjct: 463 AVVIRHLLTRFADQDEARRLLYEQQKSEEALAI-KREGDSLVDFCGYLMSSVMCDGLLVG 521 Query: 705 ENL---WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWK 761 + L +Y Y K ++ ++ G + RE ++K K Sbjct: 522 NAEIIPFSPRRYLYHAYLSYMRAHGFS--KPVTLTRFGADMP--GAMAEYGREYMKKRTK 577 Query: 762 SKRIIKGLKLKPAFESVDDNS 782 +G++ ++ Sbjct: 578 -----EGVRSNVILTDESEDW 593 >gi|88807242|ref|ZP_01122754.1| hypothetical protein WH7805_11863 [Synechococcus sp. WH 7805] gi|88788456|gb|EAR19611.1| hypothetical protein WH7805_11863 [Synechococcus sp. WH 7805] Length = 831 Score = 136 bits (341), Expect = 2e-29, Method: Composition-based stats. Identities = 65/489 (13%), Positives = 140/489 (28%), Gaps = 70/489 (14%) Query: 291 FYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDK 350 G + + S ++++K K+ +Y W+ + Sbjct: 233 IDKDGDHQFIWTVEPKESHDKALIAWTVFKDNFA----------KRKGVGLYRWNGRHWQ 282 Query: 351 ITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLE 410 + + + + + + + ++ S S L Sbjct: 283 RC-----------------PDRSDSSALLTPLHLWMDHCGWVKR---STSAINSITSELL 322 Query: 411 AGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVK-PTKELYITKSTGTPFVEGEPSQEF 469 A T DS +G +G L+ TGQ +E ++T + F Sbjct: 323 ARLS---TDAPWDSV-DLIGFANGTLNWRTGQFTPGHRREDFLTFCLDYNYEPEAKCPNF 378 Query: 470 LDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQRFIH-----IRGVGGSGKSTLMNLIKY 523 + + +++ A+ + +Q F + G G GK TL + Sbjct: 379 HRFLREACANDDGLINLVRGGFRWAIAPKDTSQAFPIERSFDVTGRKGRGKGTLSEALTA 438 Query: 524 AFG-NQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMT 582 G + ++S SL L+G R+ + ++ +A + Sbjct: 439 LVGGDHGRGLIKSSTFTN---------PNSLAGLIGKRVA-MDPDSDGRISSAGTFNAVV 488 Query: 583 GGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDAS 642 + + +L Y +T+ + + + RR I IPFD + RD Sbjct: 489 SNEPVEVKLLYKDTHPQRLGVVVWRFFNDSPGASGGGVEGMGRRIITIPFDVEPSKRDPL 548 Query: 643 FAQKLETKYTLEAKKWFL-----KGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWI 697 +K+ + W + A + G + A E D ++ Sbjct: 549 LKRKIV-EEAAGIFAWVFAMTTDEMTAALANSGTV----QSSADASIEHALERDPVVRFL 603 Query: 698 DDCCDIGEN--LWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755 + + L K + ++ Q + + S +K+ G+ + Sbjct: 604 ---LETYPEGIDRIQGRDLFKQWCDWCAQVRH---ESGSETRFGGLIKKVRVGVGVDAKG 657 Query: 756 IEKEWKSKR 764 + R Sbjct: 658 VAVRVSKGR 666 >gi|303251447|ref|ZP_07337623.1| putative primase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307252318|ref|ZP_07534215.1| hypothetical protein appser6_8360 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302649679|gb|EFL79859.1| putative primase [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306860240|gb|EFM92256.1| hypothetical protein appser6_8360 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 600 Score = 136 bits (341), Expect = 2e-29, Method: Composition-based stats. Identities = 57/421 (13%), Positives = 134/421 (31%), Gaps = 36/421 (8%) Query: 359 LVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSIT 418 L +++ + +N + +S +L+A + Sbjct: 183 LRRGSREIYAYDGKTWKQQENDDLEERAVQFFDECELGYSDSTIDRLINTLKAQLP-RMG 241 Query: 419 SDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPS-QEFLDLVSGYF 477 D + +G+L+ T + + ++T + E + F ++ Sbjct: 242 EMPCD----LIAFDNGVLNRNTLEFKPHNRLNWLTACIPHNYDEQATNTPYFDKWLNFVS 297 Query: 478 -ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEAS 536 +++ + L Q F + G GGSGKS N+ G + I+A+ Sbjct: 298 DGNQDKARNILAALYAILTNRYNWQIFFEVTGKGGSGKSVFANIATLLAGERNTISAKLE 357 Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNT 596 D + L +++ E ++ N +K ++GGD + + Sbjct: 358 DFDNAK---------DLEGFEDKTLILCPEQSKYGG-NGGGLKTISGGDLLRVNPKHKKP 407 Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLE 654 + + ++ N+ RR ++ F K + RD +F +K+ Sbjct: 408 FFT-KITALIMLINNEPCRFTERAGGVDRRRVIFDFKKVVPESERDPTFTEKITL-EVGG 465 Query: 655 AKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID--------DCCDIG-E 705 + L + ++ +A E ++ +D + D +G Sbjct: 466 IIRKVLDAFPDSLEAKKALNTQMNSQEAL-EVKKLSDPLTDFFSYFYTTEQIDGLFVGVA 524 Query: 706 NLWEES--HSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSK 763 N+ + + +Y Y + + + ++Q G + + ++K K+ Sbjct: 525 NMGVDKIRTHIYPAYLAY---TRAMNISELGLGNFVIGIEQALKQHGNQHDFMKKHTKTG 581 Query: 764 R 764 R Sbjct: 582 R 582 >gi|168756423|ref|ZP_02781430.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC4401] gi|168770139|ref|ZP_02795146.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC4486] gi|227883824|ref|ZP_04001629.1| bacteriophage P4 DNA primase [Escherichia coli 83972] gi|189356437|gb|EDU74856.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC4401] gi|189360975|gb|EDU79394.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC4486] gi|227839102|gb|EEJ49568.1| bacteriophage P4 DNA primase [Escherichia coli 83972] gi|307555753|gb|ADN48528.1| nucleoside triphosphatase [Escherichia coli ABU 83972] Length = 604 Score = 136 bits (341), Expect = 2e-29, Method: Composition-based stats. Identities = 65/441 (14%), Positives = 140/441 (31%), Gaps = 48/441 (10%) Query: 363 KEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLL 422 + V + + ++ + R + + KS +++ Sbjct: 177 SDTVHHYNGVVWEPVQDKELQRTMAQIFIDAEISYSQNAIKSAVDTMKLSLPVMG----- 231 Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVS- 474 +++ +G +G+ D TG + K ++ ++ PF + F + Sbjct: 232 NTARNLIGFSNGVFDTRTGNFREHNKNDWLLIASELPFSPPAEGETLATHAPNFWKWLRR 291 Query: 475 GYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534 E++ D + M L Q F+ + G GGSGKS + + G ++A Sbjct: 292 SVAENDRKADRVLAALFMVLANRYDWQLFLEVTGPGGSGKSVMAEICTMLAGKANTVSAS 351 Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594 + R ++G ++I+ + A IK +TGGD + + Sbjct: 352 MKALEDAR---------ERALVVGFSLIIMPDMTRYAGDGAG-IKAITGGDKVAIDPKHK 401 Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYT 652 YS V N + + RR ++ F + + RD A+K+E Sbjct: 402 APYST-RIQAVVLAVNNNAMSFSDRSGGISRRRVIFNFSEVVPENERDPMLAEKIE-GEL 459 Query: 653 LEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAW--------IDDCCDIG 704 + L + + +A ++ D+ + + D +G Sbjct: 460 AVVIRHLLTRFSDQDEAKRLLYEQQKSEEALVI-KREGDSLVDFCGYLMSSVMCDGLLVG 518 Query: 705 ENL---WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWK 761 + L +Y Y K ++ ++ G + RE ++++ K Sbjct: 519 NAEIIPFSPRRYLYHAYLAYMRAHGFG--KPVTLTRFGKDMP--GAMAEYGREYMKRKTK 574 Query: 762 SKRIIKGLKLKPAFESVDDNS 782 GL+ ++ Sbjct: 575 H-----GLRSNVILTEDSEDW 590 >gi|269140755|ref|YP_003297456.1| hypothetical protein ETAE_3414 [Edwardsiella tarda EIB202] gi|267986416|gb|ACY86245.1| hypothetical protein ETAE_3414 [Edwardsiella tarda EIB202] Length = 775 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 66/389 (16%), Positives = 116/389 (29%), Gaps = 69/389 (17%) Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVE-------GEPSQEFLDLVSGYFE 478 R +G ++G+LD TG K ++ F + F + Sbjct: 411 RRLIGFRNGVLDTSTGIFSPHCKSHWLRTLCDVDFTPPVAGETLETHAPNFWRWLDRAAG 470 Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537 + D + M L Q F+ + G GGSGKS L + G +A+ Sbjct: 471 GRADKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATLLAGADNATSADIDT 530 Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597 + R L+G ++ + + + A +K +TGGD ++ Y N Y Sbjct: 531 LEDPRKR---------ASLIGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYQNPY 580 Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEA 655 S V N + + RR +++ F + I RD K+ Sbjct: 581 STHIP-AVILAVNNNPMRFTDRSGGVSRRRVILHFPEQIAPEERDPQLKDKI-------- 631 Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGEN 706 + P + + ++ D + C E Sbjct: 632 ---ACELAVIVRQLMQQFSDPMTARTLLQAQQNSDEALCIKRDADPAFDF----CGYLEA 684 Query: 707 LWEESH---------------SLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGI 751 L E L +Y Y E T++L + KG + Sbjct: 685 LPEPDGMYIGNANIIPRQPRLYLYHAYLAYMEAHG-------YKNTLSLTMFGKGLPAML 737 Query: 752 KREKIEKEWKSKRIIKGLKLKPAFESVDD 780 K + E + K +G++ A + Sbjct: 738 KEYGVNYEKRRKN--QGIQTNLALREESN 764 >gi|326338726|gb|EGD62546.1| DNA primase , phage-associated [Escherichia coli O157:H7 str. 1125] Length = 604 Score = 135 bits (340), Expect = 2e-29, Method: Composition-based stats. Identities = 65/441 (14%), Positives = 140/441 (31%), Gaps = 48/441 (10%) Query: 363 KEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLL 422 + V + + ++ + R + + KS +++ Sbjct: 177 SDTVHHYNGVVWEPVQDKELQRTMAQIFIDAEISYSQNAIKSAVDTMKLSLPVMG----- 231 Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVS- 474 +++ +G +G+ D TG + K ++ ++ PF + F + Sbjct: 232 NAARNLIGFSNGVFDTRTGNFREHNKNDWLLIASELPFSPPAEGETLATHAPNFWKWLRR 291 Query: 475 GYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534 E++ D + M L Q F+ + G GGSGKS + + G ++A Sbjct: 292 SVAENDRKADRVLAALFMVLANRYDWQLFLEVTGPGGSGKSVMAEICTMLAGKANTVSAS 351 Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594 + R ++G ++I+ + A IK +TGGD + + Sbjct: 352 MKALEDAR---------ERALVVGFSLIIMPDMTRYAGDGAG-IKAITGGDKVAIDPKHK 401 Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYT 652 YS V N + + RR ++ F + + RD A+K+E Sbjct: 402 APYST-RIQAVVLAVNNNAMSFSDRSGGISRRRVIFNFSEVVPENERDPMLAEKIE-GEL 459 Query: 653 LEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAW--------IDDCCDIG 704 + L + + +A ++ D+ + + D +G Sbjct: 460 AVVIRHLLTRFSDQDEAKRLLYEQQKSEEALVI-KREGDSLVDFCGYLMSSVMCDGLLVG 518 Query: 705 ENL---WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWK 761 + L +Y Y K ++ ++ G + RE ++++ K Sbjct: 519 NAEIIPFSPRRYLYHAYLAYMRAHGFG--KPVTLTRFGKDMP--GAMAEYGREYMKRKTK 574 Query: 762 SKRIIKGLKLKPAFESVDDNS 782 GL+ ++ Sbjct: 575 H-----GLRSNVILTEDSEDW 590 >gi|90962177|ref|YP_536093.1| DNA primase [Lactobacillus phage Sal4] gi|90821371|gb|ABE00010.1| DNA primase [Lactobacillus phage Sal4] gi|300214851|gb|ADJ79267.1| DNA primase [Lactobacillus salivarius CECT 5713] Length = 516 Score = 135 bits (339), Expect = 3e-29, Method: Composition-based stats. Identities = 51/330 (15%), Positives = 107/330 (32%), Gaps = 25/330 (7%) Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDL-VSGYF----- 477 S + +G+ + T + T T + F +S +F Sbjct: 140 ESRNLIIVGNGVFNKNTKKLEPYNPRYIFTSKISTNYNPQAQEPNFKGWSLSKWFKDIAE 199 Query: 478 ESEEVMDYFTRCVGMALLGGNKAQRFIHIR--GVGGSGKSTLMNLIKYAFGNQYVINAEA 535 E + + A+ I + G G +GKST L++ G + Sbjct: 200 NDNEKEILLWQSLACAINPNLTPDVAIFLVDNGQGRTGKSTFERLLENLVGIDNHAPLKL 259 Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK-IKQMTGGDCMTARLNYG 594 + ++ L G +++I + N ND ++ K++ G+ + Sbjct: 260 KEFEED---------FKLANAQGVKLIIGDDNNPNDYNKTSENFKRVATGETILVNPKRL 310 Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLE 654 +S + N ++ DA RR +I F+ ++ A+ K + Sbjct: 311 PPFST-QFNCFIVQSMNGLPRFKDDSDALLRRIKIIKFNHQYNDKTANKDIKEKYIKDKR 369 Query: 655 AKKWFLKGVKAYISKGLDV-DIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHS 713 +W L I D E + +E + D ++++ + ++ Sbjct: 370 LLEWIL---SKVIVMDFDFMIDTEESRQEIKELKIANDPVAYYVNEHINDLKSQRLPIVF 426 Query: 714 LAKSYSEYREQELNYDRKRISTRTVTLNLK 743 L K + + E N +++ T T L+ Sbjct: 427 LFKHFQATSDYENNP--QKMKQSTFTRRLR 454 >gi|317506243|ref|ZP_07964062.1| phage/plasmid primase [Segniliparus rugosus ATCC BAA-974] gi|316255489|gb|EFV14740.1| phage/plasmid primase [Segniliparus rugosus ATCC BAA-974] Length = 775 Score = 135 bits (339), Expect = 3e-29, Method: Composition-based stats. Identities = 41/282 (14%), Positives = 82/282 (29%), Gaps = 21/282 (7%) Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSG--YFESEE 481 S + ++G+L+ TG+K+ + + + + E+ Sbjct: 353 SDEPLINLKNGMLNWVTGEKLDHDPKYLSAYQFPVDYDPEATCPVYEAWLRESTLVGGED 412 Query: 482 VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQN 541 + + + + + G SGKSTLM L++ G E + Sbjct: 413 QTLILESVLSQLIDFTAPPTKALFLTGPTKSGKSTLMELMEALVGGDLTSAIEFHKMED- 471 Query: 542 RPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESP 601 S+ L G R+ I ++ N A K++TG D + A +G + + Sbjct: 472 --------PFSVAELYGMRLNIDADMPANYVPEVATFKKLTGRDKINANRKFGRMF-KFK 522 Query: 602 ASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQ--KLETKYTLEAKKWF 659 NK V A+ R + F + + + L Sbjct: 523 NFAVLIFSANKMPAVGERSRAFLSRAVPASFPHSLEGSEKMNGKLPALLKAELPGVLNRL 582 Query: 660 LKGVKAYISK-----GLDVDIPEVCLKAKEEERQGTDTYQAW 696 + ++ ++ G P E + Sbjct: 583 IMALRERKARAETQGGDGFLPPN--KTVMREFEASISIAHEF 622 >gi|190150075|ref|YP_001968600.1| primase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307263408|ref|ZP_07545024.1| hypothetical protein appser13_8250 [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|189915206|gb|ACE61458.1| putative primase [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306871286|gb|EFN03014.1| hypothetical protein appser13_8250 [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 600 Score = 135 bits (339), Expect = 3e-29, Method: Composition-based stats. Identities = 57/421 (13%), Positives = 134/421 (31%), Gaps = 36/421 (8%) Query: 359 LVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSIT 418 L +++ + +N + +S +L+A + Sbjct: 183 LRRGSREIYAYDGKTWKQQENDDLEERAVQFFDECELGYSDSTIDRLINTLKAQLP-RMG 241 Query: 419 SDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPS-QEFLDLVSGYF 477 D + +G+L+ T + + ++T + E + F ++ Sbjct: 242 EMPCD----LIAFDNGVLNRNTLEFKPHNRLNWLTACIPHNYDEQATNTPHFDKWLNFVS 297 Query: 478 -ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEAS 536 +++ + L Q F + G GGSGKS N+ G + I+A+ Sbjct: 298 DGNQDKARNILAALYAILTNRYNWQIFFEVTGKGGSGKSVFANIATLLAGERNTISAKLE 357 Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNT 596 D + L +++ E ++ N +K ++GGD + + Sbjct: 358 DFDNAK---------DLEGFEDKTLILCPEQSKYGG-NGGGLKTISGGDLLRVNPKHKKP 407 Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLE 654 + + ++ N+ RR ++ F K + RD +F +K+ Sbjct: 408 FFT-KITALIMLINNEPCRFTERAGGVDRRRVIFDFKKVVPESERDPTFTEKITL-EVGG 465 Query: 655 AKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID--------DCCDIG-E 705 + L + ++ +A E ++ +D + D +G Sbjct: 466 IIRKVLDTFPDSLEAKKALNTQMNSQEAL-EVKKLSDPLTDFFSYFYTTEQIDGLFVGVA 524 Query: 706 NLWEES--HSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSK 763 N+ + + +Y Y + + + ++Q G + + ++K K+ Sbjct: 525 NMGVDKIRTHIYPAYLAY---TRAMNISELGLGNFVIGIEQALKQHGNQHDFMKKHTKTG 581 Query: 764 R 764 R Sbjct: 582 R 582 >gi|238784156|ref|ZP_04628169.1| P4-specific DNA primase [Yersinia bercovieri ATCC 43970] gi|238714865|gb|EEQ06864.1| P4-specific DNA primase [Yersinia bercovieri ATCC 43970] Length = 777 Score = 135 bits (339), Expect = 4e-29, Method: Composition-based stats. Identities = 64/431 (14%), Positives = 126/431 (29%), Gaps = 68/431 (15%) Query: 350 KITASIMNFLV---SMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTA 406 ++ A L+ + ED+ R + + S S Sbjct: 340 ELLAEHYQHLLAVPQVGEDLCRYEHGAWQVLPYRVLSREIAALFQKIRAPFSASGINSVL 399 Query: 407 QSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEG--- 463 +L+ T +G ++G+ D TGQ K ++ + Sbjct: 400 DTLKLMVPQMGTPA-----RHLIGFRNGVFDTTTGQFSAHQKTHWLRTVNSVDYTPPKAG 454 Query: 464 ----EPSQEFLDLVSGYFESE-EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLM 518 + + F ++ + E + + M L Q F+ + G GGSGKS + Sbjct: 455 ENLSDHAPHFWRWLTRAAGQQHEKQERILAALYMVLANRYDWQLFLEVTGPGGSGKSVMA 514 Query: 519 NLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKI 578 ++ G +A + +R ++G ++I+ + A I Sbjct: 515 SIASLLAGKDNTTSATIDTLESSR---------ERASVVGFSLIILPDQERWSGDGAG-I 564 Query: 579 KQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA- 637 K +TGGD + Y + YS V N + + RR +++PF + I Sbjct: 565 KAITGGDAVAIDPKYRDAYSTHIP-AVILAVNNNPMQFSDRSGGVSRRRVILPFPEVIPA 623 Query: 638 -NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQG------- 689 RD K+ ++ + P E ++ Sbjct: 624 NERDPQLLAKIT-----GELAVMVRHLMQ------RFTAPNDARVLLEAQQNSDEALEIK 672 Query: 690 --TDTYQAWIDDC-----CDIGENLW---------EESHSLAKSYSEYREQELNYDRKRI 733 D + C + L+ L +Y + E + ++ + Sbjct: 673 RGADPLVDF---CGYLLAVNTPNGLYMGNANIIPANPRKYLYHAYLSFMEARGH--QRPM 727 Query: 734 STRTVTLNLKQ 744 S + Q Sbjct: 728 SLTAFGRAVPQ 738 >gi|168009191|ref|XP_001757289.1| predicted protein [Physcomitrella patens subsp. patens] gi|162691412|gb|EDQ77774.1| predicted protein [Physcomitrella patens subsp. patens] Length = 384 Score = 135 bits (338), Expect = 4e-29, Method: Composition-based stats. Identities = 60/365 (16%), Positives = 113/365 (30%), Gaps = 79/365 (21%) Query: 373 PEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQ 432 E +K F ++D RR+ + + +LLDS +G + Sbjct: 21 METIEPATKIMDFIQSSDNRRKMMYTCAGM----------LYKEGFEELLDSRRDVIGMK 70 Query: 433 DGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGM 492 G+ D + + + YIT ST PF+ + + E + EV+D + Sbjct: 71 GGVYDFTKDKFRRMEPDDYITLSTRIPFIPLDYNSEVTN---------EVLDLLAKVF-- 119 Query: 493 ALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS 552 DI + + P Sbjct: 120 -----------------------------------------PNEDIRRYFIRFISSSTPE 138 Query: 553 LIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612 L L G I + E +E D++N +K++TG D + R Y + ++ N+ Sbjct: 139 LAMLKGRLIAFVQEPDEGDKLNLGVMKELTGNDSLYIRGLYEEGTI-ILQTTKFVLIANR 197 Query: 613 HLFVRNPDDAWWRRYIVIPFDKPIAN-------------RDASFAQKLETKYTLEAKKWF 659 + D A W R V+PF + +D +F+ K+ + Sbjct: 198 IPQMSMFDKAVWSRVRVMPFVSMFVDKIESSHDSLTTHLKDINFSNKIPL-LAPVFMRLV 256 Query: 660 LKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYS 719 ++ K Y++ GL + E D + ++ + L +Y Sbjct: 257 IEEYKQYLTYGL--EESNEVKDCTETICVSNDIFGQFLSANVEKNSKSIVAIKELYDTYK 314 Query: 720 EYREQ 724 + + Sbjct: 315 YWSKD 319 >gi|238787759|ref|ZP_04631556.1| P4-specific DNA primase [Yersinia frederiksenii ATCC 33641] gi|238724102|gb|EEQ15745.1| P4-specific DNA primase [Yersinia frederiksenii ATCC 33641] Length = 777 Score = 134 bits (337), Expect = 5e-29, Method: Composition-based stats. Identities = 63/417 (15%), Positives = 123/417 (29%), Gaps = 65/417 (15%) Query: 361 SMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSD 420 + ED+ R ++ + S S +L+ T Sbjct: 354 QVGEDLCRYENGAWQVLPYRVLSREIAALFHKIRAPFSASGINSVLDTLKLMVPQMGTPA 413 Query: 421 LLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEG-------EPSQEFLDLV 473 +G ++G+ D TGQ K ++ + + + F + Sbjct: 414 -----RHLIGFRNGVFDTTTGQFSAHQKTHWLRTVNSVDYTPPKAGENLSDHAPHFWRWL 468 Query: 474 SGYFESE-EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532 + + E + + M L Q F+ + G GGSGKS + ++ G + Sbjct: 469 TRAAGQQHEKQERILAALYMVLANRYDWQLFLEVTGPGGSGKSVMASIASLLAGKDNTTS 528 Query: 533 AEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLN 592 A + +R ++G ++I+ + A IK +TGGD + Sbjct: 529 ATIDTLESSR---------ERASVVGFSLIILPDQERWSGDGAG-IKAITGGDAVAIDPK 578 Query: 593 YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETK 650 Y + YS V N + + RR +++PF + I RD K+ T Sbjct: 579 YRDAYSTHIP-AVILAVNNNPMQFSDRSGGVSRRRVILPFPEVIPANERDPLLLAKI-TG 636 Query: 651 YTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQG---------TDTYQAWIDDC- 700 + ++ P E ++ D + C Sbjct: 637 ELAVIVRHLMQ----------RFTAPNDARALLEAQQNSDEALEIKRGADPLVDF---CG 683 Query: 701 ----CDIGENLW---------EESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQ 744 + L+ L +Y + E + ++ +S + Q Sbjct: 684 YLLAVNTPNGLYMGNANIIPANPRKYLYHAYLSFMEARGH--QRPMSLTAFGRAVPQ 738 >gi|315291925|gb|EFU51277.1| phage/plasmid primase, P4 family protein [Escherichia coli MS 153-1] Length = 584 Score = 134 bits (337), Expect = 5e-29, Method: Composition-based stats. Identities = 62/365 (16%), Positives = 119/365 (32%), Gaps = 55/365 (15%) Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE- 478 L +G LDL+TG+ T E +IT G + P + F + Sbjct: 228 DLLPFANGALDLKTGEFSPHTPENWITTHNGIEYTPPAPGENIRDNAPNFHKWLEHAAGK 287 Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538 M + M + Q FI G GGSGKST ++ G Q ++AE + + Sbjct: 288 DPRKMMRICAALYMIMANRYDWQMFIEATGDGGSGKSTFTHIASLLAGKQNTVSAEMTSL 347 Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598 +++GSR++++++ + IK++TGGD + Y ++ Sbjct: 348 DDAGGR---------AQVVGSRLIVLADQPKYTGEGTG-IKKITGGDPVEINPKYEKRFT 397 Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAK 656 N + RR ++ FD ++ +D +K+ Sbjct: 398 AVI-RAVVLATNNNPMIFTERAGGVARRRVIFRFDNIVSEAEKDRELPEKI-AAEIPVII 455 Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEER---------QGTDTYQA------WIDDCC 701 + L + PE E+R Q TD ++++ Sbjct: 456 RRLLA----------NFTDPEKARALLLEQRDGDEALAIKQQTDPVIEFCQFLNFLEEAR 505 Query: 702 DI------GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755 + + +SL + Y + K ++ +K + G + Sbjct: 506 GLMMGGGGDSVKYTTRNSLYRVYLAFMAYAGRS--KPLNVNDFGKAMKPAAKVYGHEYIT 563 Query: 756 IEKEW 760 + + Sbjct: 564 RKVKG 568 >gi|331682252|ref|ZP_08382871.1| bacteriophage P4 DNA primase [Escherichia coli H299] gi|331079883|gb|EGI51062.1| bacteriophage P4 DNA primase [Escherichia coli H299] Length = 583 Score = 134 bits (337), Expect = 5e-29, Method: Composition-based stats. Identities = 62/365 (16%), Positives = 118/365 (32%), Gaps = 55/365 (15%) Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE- 478 L +G LDL+TG+ T E +IT G + P + F + Sbjct: 227 DLLPFANGALDLKTGEFSPHTPENWITTHNGIEYTPPAPGENIRDNAPNFHKWLEHAAGK 286 Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538 M + M + Q FI G GGSGKST ++ G Q ++AE + + Sbjct: 287 DPRKMMRICAALYMIMANRYDWQMFIEATGDGGSGKSTFTHIATLLAGKQNTVSAEMTSL 346 Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598 +++GSR++++++ + IK++TGGD + Y ++ Sbjct: 347 DDAGGR---------AQVVGSRLIVLADQPKYTGEGTG-IKKITGGDPVEINPKYEKRFT 396 Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEAK 656 N + RR ++ FD + +D +K+ Sbjct: 397 TII-RAVVLATNNDPMIFTERAGGVSRRRVIFRFDNIVREDEKDKELPEKI-AAEIPVII 454 Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEER---------QGTDTY------QAWIDDCC 701 + L + PE E+R Q TD ++++ Sbjct: 455 RRLLA----------NFADPEKARALLLEQRDGDEALAIKQQTDPVVELCAALEFLEEAR 504 Query: 702 DI------GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755 + + +SL + Y + K +S ++ + G + Sbjct: 505 GLMMGGGGDTVKYTTRNSLYRVYMAFMAYTGKG--KCLSVNEFGKAMRSAAKVYGYEYIT 562 Query: 756 IEKEW 760 + + Sbjct: 563 RKVKG 567 >gi|156932824|ref|YP_001436740.1| hypothetical protein ESA_00620 [Cronobacter sakazakii ATCC BAA-894] gi|156531078|gb|ABU75904.1| hypothetical protein ESA_00620 [Cronobacter sakazakii ATCC BAA-894] Length = 771 Score = 134 bits (337), Expect = 6e-29, Method: Composition-based stats. Identities = 54/372 (14%), Positives = 118/372 (31%), Gaps = 64/372 (17%) Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478 R +G ++G+ D TG +E ++ + P + F ++ Sbjct: 409 RRLIGFRNGVFDTVTGTFGPHRRENWLRTVNSVDYTAPRPEENLKEHAPSFWQWLTRAAG 468 Query: 479 SE-EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537 + + + M L Q F+ + G GGSGKS + ++ G +A Sbjct: 469 RSHDKQERILAALFMVLANRYDWQMFLEVTGPGGSGKSVMASIATLLAGKDNTTSATIDT 528 Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597 + +R ++G ++I+ + + A IK +TGGD + Y + Y Sbjct: 529 LESSR---------ERASVVGYSLIILPDQEKWSGDGAG-IKAITGGDAVAIDPKYRDAY 578 Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEA 655 S V N + + RR +++ F + I RD K+ Sbjct: 579 STHIP-AVILAVNNNPMRFSDRSGGVSRRRVILTFPEVIPAKERDPKLLDKIS-AELAVI 636 Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDI--- 703 + ++ +P+ + + + ++ +D + C Sbjct: 637 VRHLMQ----------RFALPDEARELLQAQQSSGEALDIKRQSDPLVDF----CGYLMP 682 Query: 704 ----------GENLW--EESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGI 751 N+ L +Y + E + + +S + Q + Sbjct: 683 LSTPNGLFMGNANIRPINPKRYLYHAYLSFMESRGH--QHPLSLTAFGQAVPQT--LKEY 738 Query: 752 KREKIEKEWKSK 763 +R +++ + Sbjct: 739 ERVLLKRRTSNG 750 >gi|320197682|gb|EFW72293.1| DNA primase, phage-associated / Replicative helicase RepA [Escherichia coli WV_060327] Length = 583 Score = 134 bits (337), Expect = 6e-29, Method: Composition-based stats. Identities = 58/365 (15%), Positives = 118/365 (32%), Gaps = 55/365 (15%) Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEG-------EPSQEFLDLVSGYFE- 478 L +G+L+L+TG+ + E + T G + + + F + Sbjct: 227 DLLPFTNGVLNLKTGEFSPHSPEHWSTTHNGIEYTPPVAGENIRDNAPNFHKWLEHAAGK 286 Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538 M + M + Q FI G GGSGKST ++ G Q ++AE + + Sbjct: 287 DPRKMMRICAALYMIMANRYDWQMFIEATGDGGSGKSTFTHIATLLAGKQNTVSAEMTSL 346 Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598 +++GSR++++++ + IK++TGGD + Y ++ Sbjct: 347 DDAGGR---------AQVVGSRLIVLADQPKYTGEGTG-IKKITGGDPVEINPKYEKRFT 396 Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEAK 656 N + RR ++ FD + +D +K+ Sbjct: 397 TII-RAVVLATNNDPMIFTERAGGVSRRRVIFRFDNIVREDEKDKELPEKI-AAEIPVII 454 Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEER---------QGTDTY------QAWIDDCC 701 + L + PE E+R Q TD ++++ Sbjct: 455 RRLLA----------NFADPEKARALLLEQRDGDEALAIKQQTDPVVELCAALEFLEEAR 504 Query: 702 DI------GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755 + + +SL + Y + K +S ++ + G + Sbjct: 505 GLMMGGGGDSVKYTTRNSLYRVYMAFMAYTGKG--KCLSVNEFGKAMRSAAKVYGYEYIT 562 Query: 756 IEKEW 760 + + Sbjct: 563 RKVKG 567 >gi|67922846|ref|ZP_00516345.1| Poxvirus D5 protein [Crocosphaera watsonii WH 8501] gi|67855339|gb|EAM50599.1| Poxvirus D5 protein [Crocosphaera watsonii WH 8501] Length = 478 Score = 134 bits (337), Expect = 6e-29, Method: Composition-based stats. Identities = 50/320 (15%), Positives = 110/320 (34%), Gaps = 39/320 (12%) Query: 494 LLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL 553 + G Q+++ + G GG+GKSTL+ L G + V N + + +N Sbjct: 1 MTGRCDWQKYLELIGPGGTGKSTLIRLAIALVGFENVHNTTFKKLEK--------SNFET 52 Query: 554 IRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKH 613 + R+V+I++ + + +K +TG D + + + N++ Sbjct: 53 ASIKDKRLVVITDAERYTG-DVSTLKALTGQDTLPYEKKRQQATGGFKPTCMVILAANEN 111 Query: 614 LFVRNPDDAWWRRYIVIPFDKPIAN---------RDASFAQKLETKYTLEAKKWFLKGVK 664 + + RR + + I+ D Y W L G+ Sbjct: 112 IKTSDYTSGLERRRVTVKMKNKISGIKQKDLINISDEGLITGEFASYLPGLLNWVL-GLD 170 Query: 665 AYISKGLDVDIPEVCLKAKEEERQ---GTDTYQAWIDDCCDIGENLW------EESHSLA 715 ++ L ++ +K E + + AW++ + +S + Sbjct: 171 GDKARHLINNVNNRSIKMTLERVETLIENNPIAAWLNANIVYDPSAQTHVGLAVKSADIE 230 Query: 716 KSY--------SEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIK 767 + Y + Y + K ++ + + L + + E ++ R I+ Sbjct: 231 EGYLRANELLYTNYCAYCDASNLKPVNMQRFSALLLDFCQNQLNLSDVFKDENRNGRYIQ 290 Query: 768 GLKLKPAFESVDDNSNIIDF 787 GL+++ E D + I+F Sbjct: 291 GLRIR---EVNDLDPRFIEF 307 >gi|240119330|dbj|BAH79195.1| putative DNA primase [Escherichia coli O157:H7] Length = 584 Score = 134 bits (336), Expect = 6e-29, Method: Composition-based stats. Identities = 62/365 (16%), Positives = 119/365 (32%), Gaps = 55/365 (15%) Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE- 478 L +G LDL+TG+ T E +IT G + P + F + Sbjct: 228 DLLPFANGALDLKTGEFSPHTPENWITTHNGIEYTPPAPGENIRDNAPNFHKWLEHAAGK 287 Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538 M + M + Q FI G GGSGKST ++ G Q ++AE + + Sbjct: 288 DPRKMMRICAALYMIMANRYDWQMFIEATGDGGSGKSTFTHIASLLAGKQNTVSAEMTSL 347 Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598 +++GSR++++++ + IK++TGGD + Y ++ Sbjct: 348 DDAGGR---------AQVVGSRLIVLADQPKYTGEGTG-IKKITGGDPVEINPKYEKRFT 397 Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAK 656 N + RR ++ FD ++ +D +K+ Sbjct: 398 AVI-RAVVLATNNNPMIFTERAGGVARRRVIFRFDNIVSEAEKDRELPEKI-AAEIPVII 455 Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEER---------QGTDTYQA------WIDDCC 701 + L + PE E+R Q TD ++++ Sbjct: 456 RRLLA----------NFTDPEKARALLLEQRDGDEALAIKQQTDPVIEFCQFLNFLEEAR 505 Query: 702 DI------GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755 + + +SL + Y + K ++ +K + G + Sbjct: 506 GLMMGGGGDSVKYTTRNSLYRVYLAFMAYAGRS--KPLNVNDFGKAMKPAAKVYGHEYIT 563 Query: 756 IEKEW 760 + + Sbjct: 564 RKVKG 568 >gi|307627703|gb|ADN72007.1| nucleic acid independent nucleoside triphosphatase; phage DNA primase [Escherichia coli UM146] Length = 535 Score = 134 bits (336), Expect = 7e-29, Method: Composition-based stats. Identities = 62/365 (16%), Positives = 119/365 (32%), Gaps = 55/365 (15%) Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE- 478 L +G LDL+TG+ T E +IT G + P + F + Sbjct: 179 DLLPFANGALDLKTGEFSPHTPENWITTHNGIEYTPPAPGENIRDNAPNFHKWLEHAAGK 238 Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538 M + M + Q FI G GGSGKST ++ G Q ++AE + + Sbjct: 239 DPRKMMRICAALYMIMANRYDWQMFIEATGDGGSGKSTFTHIASLLAGKQNTVSAEMTSL 298 Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598 +++GSR++++++ + IK++TGGD + Y ++ Sbjct: 299 DDAGGR---------AQVVGSRLIVLADQPKYTGEGTG-IKKITGGDPVEINPKYEKRFT 348 Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAK 656 N + RR ++ FD ++ +D +K+ Sbjct: 349 AVI-RAVVLATNNNPMIFTERAGGVARRRVIFRFDNIVSEAEKDRELPEKI-AAEIPVII 406 Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEER---------QGTDTYQA------WIDDCC 701 + L + PE E+R Q TD ++++ Sbjct: 407 RRLLA----------NFADPEKARALLIEQRDGDEALAIKQQTDPVIEFCQFLNFLEEAR 456 Query: 702 DI------GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755 + + +SL + Y + K ++ +K + G + Sbjct: 457 GLMMGGGGDSVKYTTRNSLYRVYLAFMAYAGRS--KPLNVNDFGKAMKPAAKVYGHEYIT 514 Query: 756 IEKEW 760 + + Sbjct: 515 RKVKG 519 >gi|300902120|ref|ZP_07120125.1| phage/plasmid primase, P4 family protein [Escherichia coli MS 84-1] gi|301306883|ref|ZP_07212930.1| phage/plasmid primase, P4 family protein [Escherichia coli MS 124-1] gi|300405785|gb|EFJ89323.1| phage/plasmid primase, P4 family protein [Escherichia coli MS 84-1] gi|300837892|gb|EFK65652.1| phage/plasmid primase, P4 family protein [Escherichia coli MS 124-1] gi|315252746|gb|EFU32714.1| phage/plasmid primase, P4 family protein [Escherichia coli MS 85-1] gi|320180578|gb|EFW55508.1| DNA primase , phage-associated / Replicative helicase RepA [Shigella boydii ATCC 9905] Length = 584 Score = 134 bits (336), Expect = 8e-29, Method: Composition-based stats. Identities = 62/365 (16%), Positives = 120/365 (32%), Gaps = 55/365 (15%) Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE- 478 L +G LDL+TG+ T E +IT G + P + F + Sbjct: 228 DLLPFANGALDLKTGEFSPHTPENWITTHNGIEYTPPAPGENIRDNAPNFHKWLEHAAGK 287 Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538 M + M + Q FI G GGSGKST ++ G Q ++AE + + Sbjct: 288 DPRKMMRICAALYMIMANRYDWQMFIEATGDGGSGKSTFTHIASLLAGKQNTVSAEMTSL 347 Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598 +++GSR++++++ + IK++TGGD + Y ++ Sbjct: 348 DDAGGR---------AQVVGSRLIVLADQPKYTGEGTG-IKKITGGDPVEINPKYEKRFT 397 Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAK 656 N + RR ++ FD ++ +D +K+ Sbjct: 398 AVI-RAVVLATNNNPMIFTERAGGVARRRVIFRFDNIVSEAEKDRELPEKI-AAEIPVII 455 Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEER---------QGTDTYQA------WIDDCC 701 + L + PE E+R Q TD ++++ Sbjct: 456 RRLLA----------NFTDPEKARALLLEQRDGDEALAIKQQTDPVIEFCQFLNFLEEAR 505 Query: 702 DI------GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755 + + +SL + Y + K ++ + +K + G + Sbjct: 506 GLMMGGGGDSVKYTTRNSLYRVYLAFMAYAGRS--KPLNVAEFSKAMKPAAKVYGHEYIT 563 Query: 756 IEKEW 760 + + Sbjct: 564 RKVKG 568 >gi|194434203|ref|ZP_03066470.1| bacteriophage P4 DNA primase [Shigella dysenteriae 1012] gi|194417532|gb|EDX33634.1| bacteriophage P4 DNA primase [Shigella dysenteriae 1012] gi|332096153|gb|EGJ01156.1| putative bacteriophage P4 DNA primase [Shigella dysenteriae 155-74] Length = 582 Score = 133 bits (335), Expect = 8e-29, Method: Composition-based stats. Identities = 79/566 (13%), Positives = 165/566 (29%), Gaps = 71/566 (12%) Query: 242 GSSKGKEIARRWSKQGSTYDEENFNYKWDTFDF-EEIGDTAKKRSTFTSLFYHHGKLIPK 300 S A++W +Q +N W + E+ + + + Sbjct: 25 AGSDAWSHAKQWQEQDGPASGDNVPPVWLGPNQLAELDALKIVPDGKKRVRLYQAGELDL 84 Query: 301 GLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLV 360 + ++ + W + + L Sbjct: 85 VETKKIGQKLAAADIQDANFYPEGMHVQKCENWRRYLNAERENIAAGLTMPEQKNTQLAQ 144 Query: 361 SMKEDVFDLSEEPED---NNKNSKSPRFWFNTDY-RRQNVEENSKAKSTAQSLEAGSIFS 416 + L E D + S+ W + +E + + + A Sbjct: 145 MADSERAQLLAERFDGVCVHPESEIVHVWRGGVWCPVSTMELSREMVAIYSEHRATFSKR 204 Query: 417 ITSDLLDS-----------SSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP 465 + ++ +++ S L +G LDL+TG+ T E +IT G + P Sbjct: 205 VINNAVEALKVIAEPMGEPSGDLLPFANGALDLKTGEFSPHTPENWITTHNGIEYTPPAP 264 Query: 466 -------SQEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTL 517 + F + M + M + Q FI G GGSGKST Sbjct: 265 GENIRDNAPNFHKWLKHAAGKDPRKMMRICAALYMIMANRYDWQMFIEATGDGGSGKSTF 324 Query: 518 MNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK 577 ++ G Q ++AE + + +++GSR++++++ + Sbjct: 325 THIASLLAGKQNTVSAEMTSLDDAGGR---------AQVVGSRLIVLADQPKYTGEGTG- 374 Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637 IK++TGGD + Y ++ N + RR ++ FD ++ Sbjct: 375 IKKITGGDPVEINPKYEKRFTAVI-RAVVLATNNNPMIFTERAGGVARRRVIFRFDNIVS 433 Query: 638 --NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEER-------- 687 +D +K+ + L + PE E+R Sbjct: 434 EAEKDRELPEKI-AAEIPVIIRRLLA----------NFTDPEKARALLLEQRDGDEALAI 482 Query: 688 -QGTDTYQA------WIDDCCDI------GENLWEESHSLAKSYSEYREQELNYDRKRIS 734 Q TD ++++ + + +SL + Y + K ++ Sbjct: 483 KQQTDPVIEFCQFLNFLEEARGLMMGGGGDSVKYTTRNSLYRVYLAFMAYAGRS--KPLN 540 Query: 735 TRTVTLNLKQKGFIGGIKREKIEKEW 760 +K + G + + + Sbjct: 541 VNDFGKAMKPAAKVYGHEYITRKVKG 566 >gi|307261229|ref|ZP_07542904.1| hypothetical protein appser12_7930 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306868960|gb|EFN00762.1| hypothetical protein appser12_7930 [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 600 Score = 133 bits (335), Expect = 8e-29, Method: Composition-based stats. Identities = 57/421 (13%), Positives = 134/421 (31%), Gaps = 36/421 (8%) Query: 359 LVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSIT 418 L +++ + +N + +S +L+A + Sbjct: 183 LRRGSREIYAYDGKTWKQQENDDLEERAVQFFDECELGYSDSTIDRLINTLKAQLP-RMG 241 Query: 419 SDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPS-QEFLDLVSGYF 477 D + +G+L+ T + + ++T + E + F ++ Sbjct: 242 EMPCD----LIAFDNGVLNRNTLEFKPHNQLNWLTACIPHNYDEQATNTPYFDKWLNFVS 297 Query: 478 -ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEAS 536 +++ + L Q F + G GGSGKS N+ G + I+A+ Sbjct: 298 DGNQDKARNILAALYAILTNRYNWQIFFEVTGKGGSGKSVFANIATLLAGERNTISAKLE 357 Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNT 596 D + L +++ E ++ N +K ++GGD + + Sbjct: 358 DFDNAK---------DLEGFEDKTLILCPEQSKYGG-NGGGLKTISGGDLLRVNPKHKKP 407 Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLE 654 + + ++ N+ RR ++ F K + RD +F +K+ Sbjct: 408 FFT-KITALIMLINNEPCRFTERAGGVDRRRVIFDFKKVVPESERDPTFTEKITL-EVGG 465 Query: 655 AKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID--------DCCDIG-E 705 + L + ++ +A E ++ +D + D +G Sbjct: 466 IIRKVLDTFPDSLEAKKALNTQMNSQEAL-EVKKLSDPLTDFFSYFYTTEQIDGLFVGVA 524 Query: 706 NLWEES--HSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSK 763 N+ + + +Y Y + + + ++Q G + + ++K K+ Sbjct: 525 NMGVDKIRTHIYPAYLAY---TRAMNISELGLGNFVIGIEQALKQHGNQHDFMKKHTKTG 581 Query: 764 R 764 R Sbjct: 582 R 582 >gi|315615444|gb|EFU96076.1| putative DNA primase [Escherichia coli 3431] Length = 584 Score = 133 bits (335), Expect = 9e-29, Method: Composition-based stats. Identities = 62/365 (16%), Positives = 120/365 (32%), Gaps = 55/365 (15%) Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE- 478 L +G LDL+TG+ T E +IT G + P + F + Sbjct: 228 DLLPFANGALDLKTGEFSPHTPENWITTHNGIEYTPPAPGENIRDNAPNFHKWLEHAAGK 287 Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538 M + M + Q FI G GGSGKST ++ G Q ++AE + + Sbjct: 288 DPRKMMRICAALYMIMANRYDWQMFIEATGDGGSGKSTFTHIASLLAGKQNTVSAEMTSL 347 Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598 +++GSR++++++ + IK++TGGD + Y ++ Sbjct: 348 DDAGGR---------AQVVGSRLIVLADQPKYTGEGTG-IKKITGGDPVEINPKYEKRFT 397 Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAK 656 N + RR ++ FD ++ +D +K+ Sbjct: 398 AVI-RAVVLATNNNPMIFTERAGGVARRRVIFRFDNIVSEAEKDRELPEKI-AAEIPVII 455 Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEER---------QGTDTYQA------WIDDCC 701 + L + PE E+R Q TD ++++ Sbjct: 456 RRLLA----------NFTDPEKARALLIEQRDGDEALAIKQQTDPVIEFCQFLNFLEEAR 505 Query: 702 DI------GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755 + + +SL + Y + K ++ + +K + G + Sbjct: 506 GLMMGGGGDSVKYTTRNSLYRVYLAFMAYAGRS--KPLNVAEFSKAMKPAAKVYGHEYIT 563 Query: 756 IEKEW 760 + + Sbjct: 564 RKVKG 568 >gi|327252446|gb|EGE64105.1| phage/plasmid primase, P4 family, C-terminal domain protein [Escherichia coli STEC_7v] Length = 582 Score = 133 bits (335), Expect = 9e-29, Method: Composition-based stats. Identities = 79/566 (13%), Positives = 165/566 (29%), Gaps = 71/566 (12%) Query: 242 GSSKGKEIARRWSKQGSTYDEENFNYKWDTFDF-EEIGDTAKKRSTFTSLFYHHGKLIPK 300 S A++W +Q +N W + E+ + + + Sbjct: 25 AGSDAWSHAKQWQEQDGPASGDNVPPVWLGPNQLAELDALKIVPDGKKRVRLYQAGELDL 84 Query: 301 GLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLV 360 + ++ + W + + L Sbjct: 85 VETKKIGQKLAAADIQDANFYPEGMHVQKCENWRRYLNAERENIAAGLTMPEQKNTQLAQ 144 Query: 361 SMKEDVFDLSEEPED---NNKNSKSPRFWFNTDY-RRQNVEENSKAKSTAQSLEAGSIFS 416 + L E D + S+ W + +E + + + A Sbjct: 145 MADSERAQLLAERFDGVCVHPESEIVHVWRGGVWCPVSTMELSREMVAIYSEHRATFSKR 204 Query: 417 ITSDLLDS-----------SSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP 465 + ++ +++ S L +G LDL+TG+ T E +IT G + P Sbjct: 205 VINNAVEALKVIAEPMGEPSGDLLPFANGALDLKTGEFSPHTPENWITTHNGIEYTPPAP 264 Query: 466 -------SQEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTL 517 + F + M + M + Q FI G GGSGKST Sbjct: 265 GENIRDNAPNFHKWLEHAAGKDPSKMMRICAALYMIMANRYDWQMFIEATGDGGSGKSTF 324 Query: 518 MNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK 577 ++ G Q ++AE + + +++GSR++++++ + Sbjct: 325 THIASLLAGKQNTVSAEMTSLDDAGGR---------AQVVGSRLIVLADQQKYTGEGTG- 374 Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637 IK++TGGD + Y ++ N + RR ++ FD ++ Sbjct: 375 IKKITGGDPVEINPKYEKRFTAVI-RAVVLATNNNPMIFTERAGGVARRRVIFRFDNIVS 433 Query: 638 --NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEER-------- 687 +D +K+ + L + PE E+R Sbjct: 434 EAEKDRELPEKI-AAEIPVIIRRLLA----------NFADPEKARALLIEQRDGDEALAI 482 Query: 688 -QGTDTYQA------WIDDCCDI------GENLWEESHSLAKSYSEYREQELNYDRKRIS 734 Q TD ++++ + + +SL + Y + K ++ Sbjct: 483 KQQTDPVIEFCQFLNFLEEARGLMMGGGGDSVKYTTRNSLYRVYLAFMAYAGRS--KPLN 540 Query: 735 TRTVTLNLKQKGFIGGIKREKIEKEW 760 +K + G + + + Sbjct: 541 VNDFGKAMKPAAKVYGHEYITRKVKG 566 >gi|26247364|ref|NP_753404.1| hypothetical protein c1495 [Escherichia coli CFT073] gi|26107765|gb|AAN79964.1|AE016759_238 Hypothetical protein c1495 [Escherichia coli CFT073] Length = 584 Score = 133 bits (334), Expect = 1e-28, Method: Composition-based stats. Identities = 62/365 (16%), Positives = 119/365 (32%), Gaps = 55/365 (15%) Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE- 478 L +G LDL+TG+ T E +IT G + P + F + Sbjct: 228 DLLPFANGALDLKTGEFSPHTPENWITTHNGIEYTPPAPGENIRDNAPNFHKWLEHAAGK 287 Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538 M + M + Q FI G GGSGKST ++ G Q ++AE + + Sbjct: 288 DPRKMMRICAALYMIMANRYDWQMFIEATGDGGSGKSTFTHIASLLAGKQNTVSAEMTSL 347 Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598 +++GSR++++++ + IK++TGGD + Y ++ Sbjct: 348 DDAGGR---------AQVVGSRLIVLADQPKYTGEGTG-IKKITGGDPVEINPKYEKRFT 397 Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAK 656 N + RR ++ FD ++ +D +K+ Sbjct: 398 AVI-RAVVLATNNNPMIFTERAGGVARRRVIFRFDNIVSEAEKDRELPEKI-AAEIPVII 455 Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEER---------QGTDTYQA------WIDDCC 701 + L + PE E+R Q TD ++++ Sbjct: 456 RRLLA----------NFADPEKARALLIEQRDGDEALAIKQQTDPVIEFCQFLNFLEEAR 505 Query: 702 DI------GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755 + + +SL + Y + K ++ +K + G + Sbjct: 506 GLMMGGGGDSVKYTTRNSLYRVYLAFMAYAGRS--KPLNVNDFGKAMKPAAKVYGHEYIT 563 Query: 756 IEKEW 760 + + Sbjct: 564 RKVKG 568 >gi|238797084|ref|ZP_04640587.1| P4-specific DNA primase [Yersinia mollaretii ATCC 43969] gi|238719129|gb|EEQ10942.1| P4-specific DNA primase [Yersinia mollaretii ATCC 43969] Length = 777 Score = 133 bits (334), Expect = 1e-28, Method: Composition-based stats. Identities = 65/431 (15%), Positives = 128/431 (29%), Gaps = 68/431 (15%) Query: 350 KITASIMNFLV---SMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTA 406 ++ A L+ + ED+ + R + + S S Sbjct: 340 ELLAEHYQHLLAVPQVGEDLCRYEKGAWQVLPYRVLSREIAALFQKIRAPFSASGINSVL 399 Query: 407 QSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEG--- 463 +L+ T +G ++G+ D TGQ K ++ + Sbjct: 400 DTLKLMVPQMGTPA-----RHLIGFRNGVFDTTTGQFSAHQKTHWLRTVNSVDYTPPKAG 454 Query: 464 ----EPSQEFLDLVSGYFESE-EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLM 518 + + F ++ + E + + M L Q F+ + G GGSGKS + Sbjct: 455 ENLSDHAPHFWRWLTRAAGQQHEKQERILAALYMVLANRYDWQLFLEVTGPGGSGKSVMA 514 Query: 519 NLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKI 578 ++ G +A + +R ++G ++I+ + A I Sbjct: 515 SIASLLAGKDNTTSATIDTLESSR---------ERASVVGFSLIILPDQERWSGDGAG-I 564 Query: 579 KQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA- 637 K +TGGD + Y + YS V N + + RR +++PF + I Sbjct: 565 KAITGGDAVAIDPKYRDAYSTHIP-AVILAVNNNPMQFSDRSGGVSRRRVILPFPEVIPA 623 Query: 638 -NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQG------- 689 RD K+ T + ++ P E ++ Sbjct: 624 NERDPLLLAKI-TGELAVIVRHLMQ----------CFTAPNDARALLEAQQNSDEALEIK 672 Query: 690 --TDTYQAWIDDC-----CDIGENLW---------EESHSLAKSYSEYREQELNYDRKRI 733 D + C + L+ L +Y + E + ++ + Sbjct: 673 RGADPLVDF---CGYLLAVNTPNGLYMGNANIIPANPRKYLYHAYLSFMEARGH--QRPM 727 Query: 734 STRTVTLNLKQ 744 S + Q Sbjct: 728 SLTAFGRAVPQ 738 >gi|218689534|ref|YP_002397746.1| nucleic acid independent nucleoside triphosphatase; phage DNA primase [Escherichia coli ED1a] gi|218427098|emb|CAR07979.2| nucleic acid independent nucleoside triphosphatase; phage DNA primase [Escherichia coli ED1a] Length = 582 Score = 133 bits (334), Expect = 1e-28, Method: Composition-based stats. Identities = 64/374 (17%), Positives = 120/374 (32%), Gaps = 63/374 (16%) Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE- 478 L +G+LDL+ G+ T E +IT G + P + F + Sbjct: 226 DLLPFANGVLDLKAGEFSPHTPENWITTHNGIEYTPPAPGENIRDNAPNFHKWLEHAAGK 285 Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538 M + M + Q FI G GGSGKST ++ G Q ++AE + + Sbjct: 286 DPRKMMRICAALYMIMANRYDWQMFIEATGEGGSGKSTFTHIASLLAGKQNTVSAEMTSL 345 Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598 +++GSR++++++ + IK++TGGD + Y ++ Sbjct: 346 DDAGGR---------AQVVGSRLIVLADQPKYTGEGTG-IKKITGGDPVEINPKYEKRFT 395 Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEAK 656 N + RR ++ FD + +D +K Sbjct: 396 AVI-RAVVLATNNNPMIFTERAGGVSRRRVIFRFDNIVREDEKDKDLPEK-VAAEIPVII 453 Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEER---------QGTDTYQA------WIDDCC 701 + L + PE E+R Q TD ++++ Sbjct: 454 RRLLA----------NFADPEKARALLLEQRDGDEALAIKQQTDPVIEFCQFLNFLEEAR 503 Query: 702 DI------GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755 + + +SL + Y + K ++ + +K K Sbjct: 504 GLMMGGGGDSVKYTTRNSLYRVYLAFMAYAGRS--KPLNVAEFSKAMK--------PAAK 553 Query: 756 IEKEWKSKRIIKGL 769 + R +KG+ Sbjct: 554 VYGHEYITRRVKGV 567 >gi|218700360|ref|YP_002407989.1| nucleic acid independent nucleoside triphosphatase; phage DNA primase [Escherichia coli IAI39] gi|218370346|emb|CAR18149.1| nucleic acid independent nucleoside triphosphatase; phage DNA primase [Escherichia coli IAI39] Length = 582 Score = 133 bits (334), Expect = 1e-28, Method: Composition-based stats. Identities = 62/365 (16%), Positives = 120/365 (32%), Gaps = 55/365 (15%) Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE- 478 L +G LDL+TG+ T E +IT + G + P + F + Sbjct: 226 DLLPFANGALDLKTGEFSPHTPENWITTNNGIEYTPPAPGENIRDNAPNFHKWLEHAAGK 285 Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538 M + M + Q FI G GGSGKST ++ G Q ++AE + + Sbjct: 286 DSRKMMRICAALYMIMANRYDWQMFIEATGDGGSGKSTFTHIASLLAGKQNTVSAEMTSL 345 Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598 +++GSR++++++ + IK++TGGD + Y ++ Sbjct: 346 DDAGGR---------AQVVGSRLIVLADQPKYTGEGTG-IKKITGGDPVEINPKYEKRFT 395 Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAK 656 N + RR ++ FD ++ +D +K+ Sbjct: 396 TVI-RAVVLATNNNPMIFTERAGGVSRRRVIFRFDNIVSEAEKDRELPEKI-AAEIPVII 453 Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEER---------QGTDTYQA------WIDDCC 701 + L + PE E+R Q TD ++++ Sbjct: 454 RRLLA----------NFTDPEKARALLLEQRDGDEALAIKQQTDPVIEFCQFLNFLEEAR 503 Query: 702 DI------GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755 + + +SL + Y + K ++ +K + G + Sbjct: 504 GLMMGGGGDSVKYTTRNSLYRVYLAFMAYAGRS--KPLNVNDFGKAMKPAAKVYGHEYIT 561 Query: 756 IEKEW 760 + + Sbjct: 562 RKVKG 566 >gi|320178845|gb|EFW53808.1| DNA primase , phage-associated / Replicative helicase RepA [Shigella boydii ATCC 9905] Length = 584 Score = 133 bits (334), Expect = 1e-28, Method: Composition-based stats. Identities = 60/365 (16%), Positives = 120/365 (32%), Gaps = 55/365 (15%) Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE- 478 L +G+L+L+TG+ T E +IT G + P + F + Sbjct: 228 DLLPFTNGVLNLKTGEFSPHTPENWITTHNGIEYTPPAPGENIRDNAPNFHKWLDHAAGK 287 Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538 M + M + Q FI G GGSGKST ++ G Q ++AE + + Sbjct: 288 DPRKMMRICAALYMIMANRYDWQMFIEATGDGGSGKSTFTHIASLLAGKQNTVSAEMTSL 347 Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598 +++GSR++++++ + IK++TGGD + Y ++ Sbjct: 348 DDAGGR---------AQVVGSRLIVLADQPKYTGEGTG-IKKITGGDPVEINPKYEKRFT 397 Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAK 656 N + RR ++ FD ++ +D +K+ Sbjct: 398 AVI-RAVVLATDNNPMIFTERAGGVARRRVIFRFDNIVSEAEKDRELPEKI-AAEIPVII 455 Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQA------WIDDCC 701 + L + PE E+ +Q TD ++++ Sbjct: 456 RRLLA----------NFTDPEKARALLLEQHDGDEALAIKQQTDPVIEFCQFLNFLEEAR 505 Query: 702 DI------GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755 + + +SL + Y + K ++ +K + G + Sbjct: 506 GLMMGGGGDSVKYTTRNSLYRVYLAFMAYAGRS--KPLNVNDFGKAMKPAAKVYGHEYIT 563 Query: 756 IEKEW 760 + + Sbjct: 564 RKVKG 568 >gi|217324275|ref|ZP_03440359.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. TW14588] gi|217320496|gb|EEC28920.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. TW14588] Length = 584 Score = 133 bits (334), Expect = 1e-28, Method: Composition-based stats. Identities = 65/374 (17%), Positives = 121/374 (32%), Gaps = 63/374 (16%) Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE- 478 L +G LDL+TG+ T E +IT G + P + F + Sbjct: 228 DLLPFANGALDLKTGEFSPHTPENWITTHNGIEYTPPAPGENIRDNAPNFHKWLDHAAGK 287 Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538 M + M + Q FI G GGSGKST ++ G Q ++AE + + Sbjct: 288 DPRKMMRICAALYMIMANRYDWQMFIEATGDGGSGKSTFTHIASLLAGKQNTVSAEMTSL 347 Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598 +++GSR++++++ + IK++TGGD + Y ++ Sbjct: 348 DDAGGR---------AQVVGSRLIVLADQPKYTGEGTG-IKKITGGDPVEINPKYEKRFT 397 Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEAK 656 N + RR ++ FD + +D +K+ Sbjct: 398 TVI-RAVVLATNNNPMIFTERAGGVSRRRVIFRFDNIVREDEKDKELPEKI-AAEIPVII 455 Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEER---------QGTDTYQA------WIDDCC 701 + L + PE E+R Q TD ++++ Sbjct: 456 RRLLA----------NFADPEKARALLLEQRDGDEALAIKQQTDPVIEFCQFLNFLEEAR 505 Query: 702 DI------GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755 + + +SL + Y + K ++ + +K K Sbjct: 506 GLMMGGGGDSVKYTTRNSLYRVYLAFMAYAGRS--KPLNVAEFSKAMK--------PAAK 555 Query: 756 IEKEWKSKRIIKGL 769 + R +KG+ Sbjct: 556 VYGHEYITRRVKGV 569 >gi|237707148|ref|ZP_04537629.1| bacteriophage P4 DNA primase [Escherichia sp. 3_2_53FAA] gi|226898358|gb|EEH84617.1| bacteriophage P4 DNA primase [Escherichia sp. 3_2_53FAA] gi|294493409|gb|ADE92165.1| conserved hypothetical protein [Escherichia coli IHE3034] gi|323958175|gb|EGB53884.1| phage/plasmid primase [Escherichia coli H263] Length = 582 Score = 133 bits (333), Expect = 2e-28, Method: Composition-based stats. Identities = 79/566 (13%), Positives = 165/566 (29%), Gaps = 71/566 (12%) Query: 242 GSSKGKEIARRWSKQGSTYDEENFNYKWDTFDF-EEIGDTAKKRSTFTSLFYHHGKLIPK 300 S A++W +Q +N W + E+ + + + Sbjct: 25 AGSDAWSHAKQWQEQDGPASGDNVPPVWLGPNQLAELDALKIVPDGKKRVRLYQAGELDL 84 Query: 301 GLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLV 360 + ++ + W + + L Sbjct: 85 VETKKIGQKLAAADIQDANFYPEGMHVQKCENWRRYLNAERENIAAGLTMPEQKNTQLAQ 144 Query: 361 SMKEDVFDLSEEPED---NNKNSKSPRFWFNTDY-RRQNVEENSKAKSTAQSLEAGSIFS 416 + L E D + S+ W + +E + + + A Sbjct: 145 MADSERAQLLAERFDGVCVHPESEIVHVWRGGVWCPVSTMELSREMVAIYSEHRATFSKR 204 Query: 417 ITSDLLDS-----------SSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP 465 + ++ +++ S L +G LDL+TG+ T E +IT G + P Sbjct: 205 VINNAVEALKVIAEPMGEPSGDLLPFANGALDLKTGEFSPHTPENWITTHNGIEYTPPAP 264 Query: 466 -------SQEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTL 517 + F + M + M + Q FI G GGSGKST Sbjct: 265 GENIRDNAPNFHKWLEHAAGKDPRKMMRICAALYMIMANRYDWQMFIEATGDGGSGKSTF 324 Query: 518 MNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK 577 ++ G Q ++AE + + +++GSR++++++ + Sbjct: 325 THIASLLAGKQNTVSAEMTSLDDAGGR---------AQVVGSRLIVLADQPKYTGEGTG- 374 Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637 IK++TGGD + Y ++ N + RR ++ FD ++ Sbjct: 375 IKKITGGDPVEINPKYEKRFTAVI-RAVVLATNNNPMIFTERAGGVARRRVIFRFDNIVS 433 Query: 638 --NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEER-------- 687 +D +K+ + L + PE E+R Sbjct: 434 EAEKDRELPEKI-AAEIPVIIRRLLA----------NFADPEKARALLIEQRDGDEALAI 482 Query: 688 -QGTDTYQA------WIDDCCDI------GENLWEESHSLAKSYSEYREQELNYDRKRIS 734 Q TD ++++ + + +SL + Y + K ++ Sbjct: 483 KQQTDPVIEFCQFLNFLEEARGLMMGGGGDSVKYTTRNSLYRVYLAFMAYAGRS--KPLN 540 Query: 735 TRTVTLNLKQKGFIGGIKREKIEKEW 760 +K + G + + + Sbjct: 541 VNDFGKAMKPAAKVYGHEYITRKVKG 566 >gi|323969627|gb|EGB64914.1| phage/plasmid primase [Escherichia coli TA007] Length = 582 Score = 132 bits (332), Expect = 2e-28, Method: Composition-based stats. Identities = 65/374 (17%), Positives = 122/374 (32%), Gaps = 63/374 (16%) Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE- 478 L +G LDL+TG+ T E +IT G + P + F + Sbjct: 226 DLLPFANGALDLKTGEFSPHTPENWITTHNGIEYTPPAPGENIRDNAPNFHKWLEHAAGK 285 Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538 M + M + Q FI G GGSGKST ++ G Q ++AE + + Sbjct: 286 DPRKMMRICAALYMIMANRYDWQMFIEATGDGGSGKSTFTHIASLLAGKQNTVSAEMTSL 345 Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598 +++GSR++++++ + IK++TGGD + Y ++ Sbjct: 346 DDAGGR---------AQVVGSRLIVLADQPKYTGEGTG-IKKITGGDPVEINPKYEKRFT 395 Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAK 656 N + RR ++ FD ++ +D +++ Sbjct: 396 AVI-RAVVLATNNNPMIFTERAGGVARRRVIFRFDNIVSEAEKDRELPERI-AAEIPVII 453 Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEER---------QGTDTYQA------WIDDCC 701 + L + PE E+R Q TD ++++ Sbjct: 454 RRLLA----------NFADPEKARALLLEQRDGDEALAIKQQTDPVIEFCQFLNFLEEAR 503 Query: 702 DI------GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755 + + +SL + Y + K ++ + +K K Sbjct: 504 GLMMGGGGDSVKYTTRNSLYRVYLAFMAYAGRS--KPLNVAEFSKAMK--------PAAK 553 Query: 756 IEKEWKSKRIIKGL 769 + R IKG+ Sbjct: 554 VYGHEYITRRIKGV 567 >gi|188494151|ref|ZP_03001421.1| phage/plasmid P4 DNA primase domain protein [Escherichia coli 53638] gi|188489350|gb|EDU64453.1| phage/plasmid P4 DNA primase domain protein [Escherichia coli 53638] Length = 584 Score = 132 bits (332), Expect = 2e-28, Method: Composition-based stats. Identities = 63/365 (17%), Positives = 118/365 (32%), Gaps = 55/365 (15%) Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE- 478 L +G LDL+TG+ T E +IT G + P + F + Sbjct: 228 DLLPFANGALDLKTGEFSPHTPENWITTHNGIEYTAPAPGENIRDNAPNFHKWLDHAAGK 287 Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538 M + M + Q FI G GGSGKST ++ G Q ++AE + + Sbjct: 288 DPGKMMRICAALYMIMANRYDWQMFIEATGDGGSGKSTFTHIASLLAGKQNTVSAEMTSL 347 Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598 +++GSR++++++ + IK++TGGD + Y ++ Sbjct: 348 DDAGGR---------AQVVGSRLIVLADQPKYTGEGTG-IKKITGGDPVEINPKYEKRFT 397 Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEAK 656 N + RR ++ FD + A +D +K+ Sbjct: 398 AVI-RAVVLATNNNPMIFTERAGGVARRRVIFRFDNIVNEAEKDRELPEKI-AAEIPVII 455 Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEER---------QGTDTYQA------WIDDCC 701 + L + PE E+R Q TD ++++ Sbjct: 456 RRLLA----------NFADPEKARALLLEQRDGDEALAIKQQTDPVIEFCQFLNFLEEAR 505 Query: 702 DI------GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755 + + +SL + Y + K ++ +K + G + Sbjct: 506 GLMMGGGGDSVKYTTRNSLYRVYLAFMAYAGRT--KPLNVNDFGKAMKPAAKVYGHEYIT 563 Query: 756 IEKEW 760 + Sbjct: 564 RKING 568 >gi|284008872|emb|CBA75685.1| phage primase [Arsenophonus nasoniae] Length = 477 Score = 132 bits (331), Expect = 2e-28, Method: Composition-based stats. Identities = 51/343 (14%), Positives = 113/343 (32%), Gaps = 50/343 (14%) Query: 373 PEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQ 432 +D+ + + F+ + N E I LD +G Sbjct: 150 IKDSELSREMANFFTENNTHFSMRRINGVIDVLKVIAEP-----IRERDLD----VIGFA 200 Query: 433 DGILDLETGQKVKPTKELYITKSTGTPFVE-------GEPSQEFLDLVSGYFE-SEEVMD 484 +G+L+ + + + ++ G + E + + ++ + + Sbjct: 201 NGVLNTKNHKFSPHNPDDWLLHENGITYTEAVEGETLEANAPNYTKWLNHVSGGNADKAR 260 Query: 485 YFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544 + M L Q FI + GVGGSGKS M++ ++ G + E + R Sbjct: 261 RIKAGLYMVLANRYDWQLFIEVTGVGGSGKSVFMHIAEFLTGKHNTSSGELKSLDDARGR 320 Query: 545 EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604 + +G +++++ + + +K +TGGD + Y +S Sbjct: 321 ---------AQFVGKKLILLPDQRKYSGDGEG-LKAITGGDDVGIDPKYEKQFS-MVMKS 369 Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDAS--FAQKLETKYTLEAKKWFLKG 662 I N+ + + RR ++ F++ + ++D +K+E + L Sbjct: 370 VVIITGNRPMQFTERHNGIARRRVIFHFNESVPDKDKDKKLTEKIE-AEIPVIIRDLL-- 426 Query: 663 VKAYISKGLDVDIPEVCLKAK---------EEERQGTDTYQAW 696 L+ PE + E ++ +D + Sbjct: 427 --------LEFTQPEKAYQLLLEQRDSGEATEVKRESDPLIDF 461 >gi|228961912|ref|ZP_04123454.1| hypothetical protein bthur0005_53160 [Bacillus thuringiensis serovar pakistani str. T13001] gi|228797771|gb|EEM44842.1| hypothetical protein bthur0005_53160 [Bacillus thuringiensis serovar pakistani str. T13001] Length = 168 Score = 132 bits (331), Expect = 3e-28, Method: Composition-based stats. Identities = 40/178 (22%), Positives = 69/178 (38%), Gaps = 22/178 (12%) Query: 620 DDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPE 677 D+ WRR +IPF+ + RD ++KL W ++G + +GL P+ Sbjct: 2 DEGIWRRVKLIPFNLNLPAHKRDKRLSEKLSL-EMSGILNWAIEGCMKWQKEGLK--EPK 58 Query: 678 VCLKAKEEERQGTDTYQAWIDDCCDIG----ENLWEESHSLAKSYSEYREQELNYDRKRI 733 V +A ++ D ++ + C I E + E+ L Y + + + Sbjct: 59 VVAEATGRYKEDMDILGPFLSEVCYIDEPKNEAIKMEAKELYNVYETWC---FRSGERAL 115 Query: 734 STRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL---KPAFESVDDNSNIIDFK 788 R+ L+ KGF K +K G+ L KP + V +N+ FK Sbjct: 116 GNRSFYRMLETKGFGKT-------KGTGNKTFFTGITLLERKPVTKGVTENAENNHFK 166 >gi|15675884|ref|NP_270058.1| putative DNA primase [Streptococcus phage 370.4] gi|13623119|gb|AAK34779.1| putative DNA primase - phage associated [Streptococcus phage 370.4] Length = 562 Score = 132 bits (331), Expect = 3e-28, Method: Composition-based stats. Identities = 58/345 (16%), Positives = 128/345 (37%), Gaps = 27/345 (7%) Query: 432 QDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFL-----DLVSGYF-ESEEVMDY 485 + + + +TGQ + T ++ +T+ T + + + F E+ + Sbjct: 189 GNQLYNYKTGQFEELTPDITVTRKIKTGYNKKAKEPTIKGWKPTAWLLELFDGDAELYNL 248 Query: 486 FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545 + + ++ G Q+ + G GG+GK T L+ G V + + +++ ++R Sbjct: 249 AIQIIKASITGQ-SLQKIFWLFGEGGTGKGTFQQLLINLVGMDNVASLKITELAKSRFTT 307 Query: 546 AGKANPSLIRLMGSRIVIISETNENDEI-NAAKIKQMTGGDCMTARLNYGNTYSESPASF 604 + L+G IVI + ++ I + + I + GD MT YS + Sbjct: 308 SI--------LLGKSIVIGDDIQKDAVIKDTSDIFSLATGDIMTIEDKGKRPYS-IRLNM 358 Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVK 664 T N + A RR+ ++PF K + + A + + E ++ LK Sbjct: 359 TVVQSSNGLPRMNGDKSAIDRRFRILPFTKVFKGK-PNKAIRNDYINRKEVLEYLLKLA- 416 Query: 665 AYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD-CCDIGENLWEESHSLAKSYSEYRE 723 I + P+ ++ EE + + ++ D + + + + + + E Sbjct: 417 --IETPITDINPKASIEILEEHHKEMNPVIDFVSKFFTDELTSEFIPNSFVYHVWKGFLE 474 Query: 724 QELNYDRKRISTRTVTLNLKQK---GFIGGIKREKIEKEWKSKRI 765 ++ S R + +K GF G K + ++ + Sbjct: 475 YYD--IKQIKSERGLHKEIKSNLPEGFEAGQKVIPVGRQLHTGFY 517 >gi|50915163|ref|YP_061135.1| virulence-associated protein E [Streptococcus pyogenes MGAS10394] gi|50904237|gb|AAT87952.1| Virulence-associated protein E [Streptococcus pyogenes MGAS10394] Length = 562 Score = 132 bits (331), Expect = 3e-28, Method: Composition-based stats. Identities = 58/345 (16%), Positives = 128/345 (37%), Gaps = 27/345 (7%) Query: 432 QDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFL-----DLVSGYF-ESEEVMDY 485 + + + +TGQ + T ++ +T+ T + + + F E+ + Sbjct: 189 GNQLYNYKTGQFEELTPDITVTRKIKTGYNKKAKEPTIKGWKPTAWLLELFDGDAELYNL 248 Query: 486 FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545 + + ++ G Q+ + G GG+GK T L+ G V + + +++ ++R Sbjct: 249 AIQIIKASITGQ-SLQKIFWLFGEGGTGKGTFQQLLINLVGMDNVASLKITELAKSRFTT 307 Query: 546 AGKANPSLIRLMGSRIVIISETNENDEI-NAAKIKQMTGGDCMTARLNYGNTYSESPASF 604 + L+G IVI + ++ I + + I + GD MT YS + Sbjct: 308 SI--------LLGKSIVIGDDIQKDAVIKDTSDIFSLATGDIMTIEDKGKRPYS-IRLNM 358 Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVK 664 T N + A RR+ ++PF K + + A + + E ++ LK Sbjct: 359 TVVQSSNGLPRMNGDKSAIDRRFRILPFTKVFKGK-PNKAIRNDYINRKEVLEYLLKLA- 416 Query: 665 AYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD-CCDIGENLWEESHSLAKSYSEYRE 723 I + P+ ++ EE + + ++ D + + + + + + E Sbjct: 417 --IETPITDINPKASIEILEEHHKEMNPVIDFVSKFFTDELTSEFIPNSFVYHVWKGFLE 474 Query: 724 QELNYDRKRISTRTVTLNLKQK---GFIGGIKREKIEKEWKSKRI 765 ++ S R + +K GF G K + ++ + Sbjct: 475 YYD--IKQIKSERGLHKEIKSNLPEGFEAGQKVIPVGRQLHTGFY 517 >gi|191172101|ref|ZP_03033645.1| bacteriophage P4 DNA primase [Escherichia coli F11] gi|300991771|ref|ZP_07179634.1| phage/plasmid primase, P4 family protein [Escherichia coli MS 200-1] gi|190907628|gb|EDV67223.1| bacteriophage P4 DNA primase [Escherichia coli F11] gi|300305525|gb|EFJ60045.1| phage/plasmid primase, P4 family protein [Escherichia coli MS 200-1] Length = 584 Score = 131 bits (330), Expect = 3e-28, Method: Composition-based stats. Identities = 61/365 (16%), Positives = 119/365 (32%), Gaps = 55/365 (15%) Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE- 478 L +G LDL+TG+ + E +IT G + P + F + Sbjct: 228 DLLPFANGALDLKTGEFSPHSPENWITTHNGIEYTPPVPGENIRDNAPNFHKWLDHAAGK 287 Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538 M + M + Q FI G GGSGKST ++ G Q ++AE + + Sbjct: 288 DPGKMMRICAALYMIMANRYDWQMFIEATGDGGSGKSTFTHIASLLAGKQNTVSAEMTSL 347 Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598 +++GSR++++++ + IK++TGGD + Y ++ Sbjct: 348 DDAGGR---------AQVVGSRLIVLADQPKYTGEGTG-IKKITGGDPVEINPKYEKRFT 397 Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAK 656 N + RR ++ FD ++ +D +K+ Sbjct: 398 AVI-RAVVLATNNNPMIFTERAGGVARRRVIFRFDNIVSEAEKDRELPEKI-AAEIPVII 455 Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEER---------QGTDTYQA------WIDDCC 701 + L + PE E+R Q TD ++++ Sbjct: 456 RRLLA----------NFADPEKARALLLEQRDGDEALAIKQQTDPVIEFCQFLNFLEEAR 505 Query: 702 DI------GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755 + + +SL + Y + K ++ +K + G + Sbjct: 506 GLMMGGGGDSVKYTTRNSLYRVYLAFMAYAGRT--KPLNVNDFGKAMKPAAKVYGHEYIT 563 Query: 756 IEKEW 760 + + Sbjct: 564 RKVKG 568 >gi|324012997|gb|EGB82216.1| phage/plasmid primase, P4 family protein [Escherichia coli MS 60-1] Length = 584 Score = 131 bits (330), Expect = 4e-28, Method: Composition-based stats. Identities = 61/365 (16%), Positives = 119/365 (32%), Gaps = 55/365 (15%) Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE- 478 L +G LDL+TG+ + E +IT G + P + F + Sbjct: 228 DLLPFANGALDLKTGEFSPHSPENWITTHNGIEYTPPVPGENIRDNAPNFHKWLDHAAGK 287 Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538 M + M + Q FI G GGSGKST ++ G Q ++AE + + Sbjct: 288 DPGKMMRICAALYMIMANRYDWQMFIEATGDGGSGKSTFTHIASLLAGKQNTVSAEMTSL 347 Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598 +++GSR++++++ + IK++TGGD + Y ++ Sbjct: 348 DDAGGR---------AQVVGSRLIVLADQPKYTGEGTG-IKKITGGDPVEINPKYEKRFT 397 Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAK 656 N + RR ++ FD ++ +D +K+ Sbjct: 398 AVI-RAVVLATNNNPMIFTERAGGVARRRVIFRFDNIVSEAEKDRELPEKI-AAEIPVII 455 Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEER---------QGTDTYQA------WIDDCC 701 + L + PE E+R Q TD ++++ Sbjct: 456 RRLLA----------NFADPEKARALLLEQRDGDEALAIKQQTDPVIEFCQFLNFLEEAR 505 Query: 702 DI------GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755 + + +SL + Y + K ++ +K + G + Sbjct: 506 GLMMGGGGDSVKYTTRNSLYRVYLAFMAYAGRT--KPLNVNDFGKAMKPAAKVYGHEYIT 563 Query: 756 IEKEW 760 + + Sbjct: 564 RKVKG 568 >gi|254480931|ref|ZP_05094177.1| Primase C terminal 2 family protein [marine gamma proteobacterium HTCC2148] gi|214038726|gb|EEB79387.1| Primase C terminal 2 family protein [marine gamma proteobacterium HTCC2148] Length = 657 Score = 131 bits (330), Expect = 4e-28, Method: Composition-based stats. Identities = 58/307 (18%), Positives = 105/307 (34%), Gaps = 37/307 (12%) Query: 17 GFKLIPLRLGDKRPQRLGKWEE----QLLSSEKIDKL----PACGFGFVCGVGEQPLYAF 68 GF ++P+ G KRP KW +LLS + + P V G + Sbjct: 32 GFVVVPIIPGTKRPAI--KWRSDQGGRLLSRRSVARYWRKHPKYDVAIVVGPR---IIML 86 Query: 69 DIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQG--HL 126 D D+ + + + L IVR + + F + I K +S + Sbjct: 87 DADTPEAEARLHEIEAAHDLTPKIIVRTSR--GLHHYFGLADGVIAKADGLDSKSNPTGI 144 Query: 127 DILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFF--QEITVPL 184 DI + T K + +ED ++ + V+ + + + + P Sbjct: 145 DIRAGESLAIVPPS---TSKSFEL---CEANSLEDLGVVGQNFVDAIVRNNGRKPASPPA 198 Query: 185 VKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSS 244 + +P+ T N + + + + L + + +W V MAVHH T G Sbjct: 199 TSTPPASLPAPITTLTNAEEARIQNLLSHLEP------DLCYQDWSHVGMAVHHATGGGQ 252 Query: 245 KGKEIARRWSKQGSTY-DEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLL 303 G ++ +WS G Y + W F E + T +L + + LL Sbjct: 253 IGLDLFDQWSSGGKKYIGRHDIQNAWKYFSTER-----EDPITLGTLIMMANQAKQQLLL 307 Query: 304 ASRFSDA 310 + + Sbjct: 308 PAPATMT 314 >gi|326692265|ref|ZP_08229270.1| poxvirus D5 protein [Leuconostoc argentinum KCTC 3773] Length = 475 Score = 131 bits (329), Expect = 5e-28, Method: Composition-based stats. Identities = 56/417 (13%), Positives = 123/417 (29%), Gaps = 24/417 (5%) Query: 376 NNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGI 435 K++++ + ++ N K S + D + + ++G Sbjct: 68 TEKSARAYIEREALENLKRYNAYNVKRMQGVSKTTLIQTISEHNPFEDQRTDIIAFKNGA 127 Query: 436 LDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALL 495 ++ETG + Y+ + + S F + + +G A + Sbjct: 128 YEIETGNITPNQQLHYLVNGHDIEINKDGQAPNIEAWGSYLFGNSW--QFIKELLGYAFI 185 Query: 496 GGNK--AQRFIHIRGVGGSGKSTLMNLIKY-AFGNQYVINAEASDIMQNRPPEAGKANPS 552 K I + +GG+GKS + I + G + ++ + I + A Sbjct: 186 PEYKTFNTIAIIVDEMGGTGKSYFFDSIVFPLLGTKNIVAKDMDTIAGSNGKS---ARFG 242 Query: 553 LIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612 LI L I + + ++ ++GGD + + N+ Sbjct: 243 LIGLFEKLSNIHLDLPDTRIEVPDTLRSLSGGDRIDVEAKNADA-LSLKFYALLLFGANQ 301 Query: 613 HLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQK--LETKYT-----LEAKKWFLKGVKA 665 + + A +R ++P P A K L L A + + Sbjct: 302 TPNI-AVNVALSQRIKIVPVTAPRARERPQEQAKRALLWDEKQAIKELGAFAYSVLTAYQ 360 Query: 666 YISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLW---EESHSLAKSYSEYR 722 + + A E + D ++ D +NL+ + + Sbjct: 361 QAEQRGKFSTSDEIETATREWLERQDLVTMFLKDVTREDDNLYSGGVSISQTWDLFQLWL 420 Query: 723 EQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIK--GLKLKPAFES 777 + + + + + ++Q G+ R + + GL L P F Sbjct: 421 QDNGIHSK--LQRKQFNGRMEQLGYKKIKTRSHQTGKTTEYPVWSWDGLDLDPYFNE 475 >gi|56808601|ref|ZP_00366330.1| COG3378: Predicted ATPase [Streptococcus pyogenes M49 591] gi|209558920|ref|YP_002285392.1| Putative DNA primase-phage associated [Streptococcus pyogenes NZ131] gi|209540121|gb|ACI60697.1| Putative DNA primase-phage associated [Streptococcus pyogenes NZ131] Length = 562 Score = 131 bits (329), Expect = 5e-28, Method: Composition-based stats. Identities = 57/345 (16%), Positives = 128/345 (37%), Gaps = 27/345 (7%) Query: 432 QDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFL-----DLVSGYF-ESEEVMDY 485 + + + +TG+ + T ++ +T+ T + + + F E+ + Sbjct: 189 GNRLYNYKTGRFEELTPDITVTRKIKTSYNKKAKEPTIKGWKPTTWLLELFDGDTELYNL 248 Query: 486 FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545 + + ++ G Q+ + G GG+GK T L+ G V + + +++ ++R Sbjct: 249 AIQIIKASITGQ-SLQKIFWLFGEGGTGKGTFQQLLINLVGMDNVASLKITELAKSRFTT 307 Query: 546 AGKANPSLIRLMGSRIVIISETNENDEI-NAAKIKQMTGGDCMTARLNYGNTYSESPASF 604 + L+G IVI + ++ I + + I + GD MT YS + Sbjct: 308 SI--------LLGKSIVIGDDIQKDAVIKDTSDIFSLATGDIMTIEDKGKRPYS-IRLNM 358 Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVK 664 T N + A RR+ ++PF K + + A + + E ++ LK Sbjct: 359 TVVQSSNGLPRMNGDKSAIDRRFRILPFTKVFKGK-PNKAIRNDYINRKEVLEYLLKLA- 416 Query: 665 AYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD-CCDIGENLWEESHSLAKSYSEYRE 723 I + P+ ++ EE + + ++ D + + + + + + E Sbjct: 417 --IETPITDINPKTSIEILEEHHKEMNPVIDFVSKFFTDELTSEFIPNSFVYHVWKGFLE 474 Query: 724 QELNYDRKRISTRTVTLNLKQK---GFIGGIKREKIEKEWKSKRI 765 ++ S R + +K GF G K + ++ + Sbjct: 475 YYD--IKQIKSERGLHKEIKSNLPEGFEAGQKVIPVGRQLHTGFY 517 >gi|322410912|gb|EFY01820.1| Putative DNA primase-phage associated protein [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] gi|322411248|gb|EFY02156.1| Putative DNA primase-phage associated protein [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 562 Score = 131 bits (328), Expect = 6e-28, Method: Composition-based stats. Identities = 56/345 (16%), Positives = 128/345 (37%), Gaps = 27/345 (7%) Query: 432 QDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFL-----DLVSGYF-ESEEVMDY 485 + + + +TG+ + T ++ +T+ T + + + F E+ + Sbjct: 189 GNRLYNYKTGRFEELTPDITVTRKIKTNYNKKAKEPTIKGWKPTTWLLELFDGDTELYNL 248 Query: 486 FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545 + + ++ G Q+ + G GG+GK T L+ G V + + +++ ++R Sbjct: 249 AIQIIKASITGQ-SLQKIFWLFGEGGTGKGTFQQLLINLVGMDNVASLKITELAKSRFTT 307 Query: 546 AGKANPSLIRLMGSRIVIISETNENDEI-NAAKIKQMTGGDCMTARLNYGNTYSESPASF 604 + L+G IVI + ++ I + + + + GD MT YS + Sbjct: 308 SI--------LLGKSIVIGDDIQKDAVIKDTSDMFSLATGDIMTIEDKGKRPYS-IRLNM 358 Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVK 664 T N + A RR+ ++PF K + + A + + E ++ LK Sbjct: 359 TVVQSSNGLPRMNGDKSAIDRRFRILPFTKVFKGK-PNKAIRNDYINRKEVLEYLLKLA- 416 Query: 665 AYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD-CCDIGENLWEESHSLAKSYSEYRE 723 I + P+ ++ EE + + ++ D + + + + + + E Sbjct: 417 --IETPITDINPKTSIEILEEHHKEMNPVIDFVSKFFTDELTSEFIPNSFVYHVWKGFLE 474 Query: 724 QELNYDRKRISTRTVTLNLKQK---GFIGGIKREKIEKEWKSKRI 765 ++ S R + +K GF G K + ++ + Sbjct: 475 YYD--IKQIKSERGLHKEIKSNLPEGFEAGQKVIPVGRQLHTGFY 517 >gi|168758806|ref|ZP_02783813.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC4401] gi|168769867|ref|ZP_02794874.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC4486] gi|195937923|ref|ZP_03083305.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC4024] gi|189354443|gb|EDU72862.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC4401] gi|189361144|gb|EDU79563.1| bacteriophage P4 DNA primase [Escherichia coli O157:H7 str. EC4486] Length = 584 Score = 131 bits (328), Expect = 7e-28, Method: Composition-based stats. Identities = 62/365 (16%), Positives = 120/365 (32%), Gaps = 55/365 (15%) Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE- 478 L +G LDL+TG+ T E +IT G + P + F + Sbjct: 228 DLLPFANGALDLKTGEFSPHTPENWITTHNGIEYTPPAPGENIRDNAPNFHKWLEHAARK 287 Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538 M + M + Q FI G GGSGKST ++ G Q ++AE + + Sbjct: 288 DPRKMMRICAALYMIMANRYDWQMFIEASGDGGSGKSTFTHIASLLAGKQNTVSAEMTSL 347 Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598 +++GSR++++++ + IK++TGGD + Y ++ Sbjct: 348 DDAGGR---------AQVVGSRLIVLADQPKYTGEGTG-IKKITGGDPVEINPKYEKRFT 397 Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAK 656 N + RR ++ FD ++ +D +K+ Sbjct: 398 AVI-RAVVLATNNNPMIFTERAGGVARRRVIFRFDNIVSEAEKDRELPEKI-AAEIPVII 455 Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEER---------QGTDTYQA------WIDDCC 701 + L + PE E+R Q TD ++++ Sbjct: 456 RRLLA----------NFTDPEKARALLLEQRDGDEALAIKQQTDPVIEFCQFLNFLEEAR 505 Query: 702 DI------GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755 + + +SL + Y + K ++ + +K + G + Sbjct: 506 GLMMGGGGDSVKYTTRNSLYRVYLAFMAYAGRS--KPLNVAEFSKAMKPAAKVYGHEYIT 563 Query: 756 IEKEW 760 + + Sbjct: 564 RKVKG 568 >gi|333008342|gb|EGK27816.1| phage/plasmid primase [Shigella flexneri K-272] gi|333019830|gb|EGK39102.1| phage/plasmid primase [Shigella flexneri K-227] Length = 583 Score = 130 bits (327), Expect = 7e-28, Method: Composition-based stats. Identities = 78/568 (13%), Positives = 167/568 (29%), Gaps = 74/568 (13%) Query: 242 GSSKGKEIARRWSKQGSTYDEENFNYKWDTFDF-EEIGDTAKKRSTFTSLFYHHGKLIPK 300 S A++W +Q +N W + E+ + + + Sbjct: 25 AGSDAWSHAKQWQEQDGPASGDNVPPVWLGPNQLAELDALKIVPDGKKRVRLYQAGELDL 84 Query: 301 GLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLV 360 + ++ + W + + L Sbjct: 85 VETKKIGQKLAAADIQDANFYPEGMHVQKCENWRRYLNAERENIAAGLTMPEQKNTQLAQ 144 Query: 361 SMKEDVFDLSEEPED---NNKNSKSPRFWFNTDY-RRQNVEENSKAKSTAQSLEAGSIFS 416 + L E D ++ S+ W + +E + + + A Sbjct: 145 MADSERAQLLAERFDGVCVHQESEIVHVWRGGVWCPVSTMELSREMVAIYSEHRATFSKR 204 Query: 417 ITSDLLDS-----------SSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP 465 + ++ +++ S L +G LDL+TG+ T E +IT G + P Sbjct: 205 VINNAVEALKVIAEPMGEPSGDLLPFANGALDLKTGEFSPHTPENWITTHNGIEYTPPAP 264 Query: 466 SQ-------EFLDLVSGYFESEEVMDYFTRCVG---MALLGGNKAQRFIHIRGVGGSGKS 515 + F + ++ + R M + Q FI G GGSGKS Sbjct: 265 GENIRDNALNFHKWLEHAAG-KDQRNKMMRICAALYMIMANRYDWQMFIEATGDGGSGKS 323 Query: 516 TLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA 575 T ++ G Q ++AE + + +++GSR++++++ + Sbjct: 324 TFTHIASLLAGKQNTVSAEMTSLDDAGGR---------AQVVGSRLIVLADQPKYTGEGT 374 Query: 576 AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP 635 IK++TGGD + Y ++ N + RR ++ FD Sbjct: 375 G-IKKITGGDPVEINPKYEKRFTAVI-RAVVLATNNNPMIFTERAGGVARRRVIFRFDNI 432 Query: 636 IA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEER------ 687 ++ +D +K+ + L + E E+R Sbjct: 433 VSEAEKDRELPEKI-AAEIPVIIRRLLA----------NFTDSEKARALLLEQRDGDEAL 481 Query: 688 ---QGTDTYQA------WIDDCCDI------GENLWEESHSLAKSYSEYREQELNYDRKR 732 Q TD ++++ + + +SL + Y + K Sbjct: 482 AIKQQTDPVIEFCQFLNFLEEARGLMMGGGGDSVKYTTRNSLYRVYLAFMAYAGRS--KP 539 Query: 733 ISTRTVTLNLKQKGFIGGIKREKIEKEW 760 ++ +K + G + + + Sbjct: 540 LNVNDFGKAMKPAAKVYGHEYITRKVKG 567 >gi|281600549|gb|ADA73533.1| Bacteriophage P4 DNA primase [Shigella flexneri 2002017] Length = 499 Score = 130 bits (327), Expect = 7e-28, Method: Composition-based stats. Identities = 61/365 (16%), Positives = 119/365 (32%), Gaps = 55/365 (15%) Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ-------EFLDLVSGYFE- 478 L +G LDL+TG+ T E +IT G + P + F + Sbjct: 143 DLLPFANGALDLKTGEFSPHTPENWITTHNGIEYTPPAPGENIRDNALNFHKWLEHAAGK 202 Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538 + M + M + Q FI G GGSGKST ++ G Q ++AE + + Sbjct: 203 DQRKMMRICAALYMIMANRYDWQMFIEATGDGGSGKSTFTHIASLLAGKQNTVSAEMTSL 262 Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598 +++GSR++++++ + IK++TGGD + Y ++ Sbjct: 263 DDAGGR---------AQVVGSRLIVLADQPKYTGEGTG-IKKITGGDPVEINPKYEKRFT 312 Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAK 656 N + RR ++ FD ++ +D +K+ Sbjct: 313 AVI-RAVVLATNNNPMIFTERAGGVARRRVIFRFDNIVSEAEKDRELPEKI-AAEIPVII 370 Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEER---------QGTDTYQA------WIDDCC 701 + L + E E+R Q TD ++++ Sbjct: 371 RRLLA----------NFTDSEKARALLLEQRDGDEALAIKQQTDPVIEFCQFLNFLEEAR 420 Query: 702 DI------GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755 + + +SL + Y + K ++ +K + G + Sbjct: 421 GLMMGGGGDSVKYTTRNSLYRVYLAFMAYAGRS--KPLNVNDFGKAMKPAAKVYGHEYIT 478 Query: 756 IEKEW 760 + + Sbjct: 479 RKVKG 483 >gi|182419856|ref|ZP_02951096.1| hypothetical protein CBY_4020 [Clostridium butyricum 5521] gi|237666893|ref|ZP_04526878.1| conserved hypothetical protein [Clostridium butyricum E4 str. BoNT E BL5262] gi|182376404|gb|EDT73986.1| hypothetical protein CBY_4020 [Clostridium butyricum 5521] gi|237658092|gb|EEP55647.1| conserved hypothetical protein [Clostridium butyricum E4 str. BoNT E BL5262] Length = 831 Score = 130 bits (327), Expect = 8e-28, Method: Composition-based stats. Identities = 95/518 (18%), Positives = 167/518 (32%), Gaps = 21/518 (4%) Query: 281 AKKRSTFTSLFYHHGKLIPKGLLA--SRFSDAYNKAMFSIYKKGHFLYTADT-KAWYKKD 337 K + + + K L SR A + K F + D K D Sbjct: 319 PTKYNDLNEWLIADKEELEKELNTVVSRLKYANKINISGDVKDAFFSWIGDNLKYILNCD 378 Query: 338 KNNVYI-WSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNV 396 +I W+ + L+ K + + + SP + ++ Sbjct: 379 DERRFIYWNEKAWIRKTEEESRLLYGKFIKKCEEQFKRNRARGKYSPEEASKVLNKVKSW 438 Query: 397 EENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDG-ILDLETGQKVKPTKELYITKS 455 SKAK + +I L +G I+DL+ G KE + + Sbjct: 439 RNTSKAKECLNLIGLDEDLTINIAEYKKKYHILISANGKIIDLKDGVIRDSVKEDMVLDT 498 Query: 456 TGTPFVEGEPS-----QEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVG 510 V E + ++ L S EE +++ + M L G N Q + G Sbjct: 499 VPYNLVGKEEALDFMEKKILKTYSYVLG-EERLNFLLDFLAMKLSGKN-YQLALINIGPS 556 Query: 511 GSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN 570 SGKS + NL + N ++ + + ++ L I + SE +N Sbjct: 557 KSGKSMMKNLTTNLYPNLVAQIPYTYLTTSHKGNMGAERDDIIVNLDKKLIALSSEVEKN 616 Query: 571 DE-INAAKIKQMTGGDCMTARLNYGNTYSESPASFT-PFIVPNKHLFVRNPDDAWWRRYI 628 + I + K + AR G + + I N+ DDA R + Sbjct: 617 NSPIAIGRFKNLLSNSITDARAAGGKMQNGIDLTHLDMIIDTNEMPSFSGYDDAIENRLV 676 Query: 629 VIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEE 686 I + I +R +F ++ + +F+ +A K + +PEV K E Sbjct: 677 FINWQNSIPVEDRIDNFNGEVIVPNMDKIWSYFI--YRAIELKDKKIVVPEVIKKDSAER 734 Query: 687 RQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746 + D + + E + E L +E EL + K+ ++ + KG Sbjct: 735 KGELDKFTM---NVVTKLEYIEGEFIELVTLINELEIFELCPELKQSDKLHKSITDRIKG 791 Query: 747 FIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDNSNI 784 G K + K IKG+ LK ++ Sbjct: 792 VPGFEKVIQYRKGKYKVNGIKGIALKQKNSISQGDTIY 829 >gi|332761077|gb|EGJ91364.1| phage/plasmid primase [Shigella flexneri K-671] Length = 532 Score = 130 bits (327), Expect = 9e-28, Method: Composition-based stats. Identities = 61/365 (16%), Positives = 119/365 (32%), Gaps = 55/365 (15%) Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ-------EFLDLVSGYFE- 478 L +G LDL+TG+ T E +IT G + P + F + Sbjct: 176 DLLPFANGALDLKTGEFSPHTPENWITTHNGIEYTPPAPGENIRDNALNFHKWLEHAAGK 235 Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538 + M + M + Q FI G GGSGKST ++ G Q ++AE + + Sbjct: 236 DQRKMMRICAALYMIMANRYDWQMFIEATGDGGSGKSTFTHIASLLAGKQNTVSAEMTSL 295 Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598 +++GSR++++++ + IK++TGGD + Y ++ Sbjct: 296 DDAGGR---------AQVVGSRLIVLADQPKYTGEGTG-IKKITGGDPVEINPKYEKRFT 345 Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAK 656 N + RR ++ FD ++ +D +K+ Sbjct: 346 AVI-RAVVLATNNNPMIFTERAGGVARRRVIFRFDNIVSEAEKDRELPEKI-AAEIPVII 403 Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEER---------QGTDTYQA------WIDDCC 701 + L + E E+R Q TD ++++ Sbjct: 404 RRLLA----------NFTDSEKARALLLEQRDGDEALAIKQQTDPVIEFCQFLNFLEEAR 453 Query: 702 DI------GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755 + + +SL + Y + K ++ +K + G + Sbjct: 454 GLMMGGGGDSVKYTTRNSLYRVYLAFMAYAGRS--KPLNVNDFGKAMKPAAKVYGHEYIT 511 Query: 756 IEKEW 760 + + Sbjct: 512 RKVKG 516 >gi|110805144|ref|YP_688664.1| bacteriophage P4 DNA primase [Shigella flexneri 5 str. 8401] gi|110614692|gb|ABF03359.1| Bacteriophage P4 DNA primase [Shigella flexneri 5 str. 8401] Length = 582 Score = 130 bits (326), Expect = 1e-27, Method: Composition-based stats. Identities = 78/566 (13%), Positives = 167/566 (29%), Gaps = 71/566 (12%) Query: 242 GSSKGKEIARRWSKQGSTYDEENFNYKWDTFDF-EEIGDTAKKRSTFTSLFYHHGKLIPK 300 S A++W +Q +N W + E+ + + + Sbjct: 25 AGSDAWSHAKQWQEQDGPASGDNVPPVWFGPNQLAELDALKIVPDGKKRVRLYQAGELDL 84 Query: 301 GLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLV 360 + ++ + W + + L Sbjct: 85 VETKKIGQKLAAADIQDANFYPEGMHVQKCENWRRYLNAERENIAAGLTMPEQKNTQLAQ 144 Query: 361 SMKEDVFDLSEEPED---NNKNSKSPRFWFNTDY-RRQNVEENSKAKSTAQSLEAGSIFS 416 + L E D ++ S+ W + +E + + + A Sbjct: 145 MADSERAQLLAERFDGVCVHQESEIVHVWRGGVWCPVSTMELSREMVAIYSEHRATFSKR 204 Query: 417 ITSDLLDS-----------SSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP 465 + ++ +++ S L +G LDL+TG+ T E +IT G + P Sbjct: 205 VINNAVEALKVIAEPMGEPSGDLLPFANGALDLKTGEFSPHTPENWITTHNGIEYTPPAP 264 Query: 466 SQ-------EFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTL 517 + F + + M + M ++ Q FI G GGSGKST Sbjct: 265 GENIRDNALNFHKWLEHAAGKDQRKMMRICAALYMIMVNRYDWQMFIEATGDGGSGKSTF 324 Query: 518 MNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK 577 ++ G Q ++AE + + +++GSR++++++ + Sbjct: 325 THIASLLAGKQNTVSAEMTSLDDAGGR---------AQVVGSRLIVLADQPKYTGEGTG- 374 Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637 IK++TGGD + Y ++ N + RR ++ FD ++ Sbjct: 375 IKKITGGDPVEINPKYEKRFTAVI-RAVVLATNNNPMIFTERAGGVARRRVIFRFDNIVS 433 Query: 638 --NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEER-------- 687 +D +K+ + L + E E+R Sbjct: 434 EAEKDRELPEKI-AAEIPVIIRRLLA----------NFTDSEKARALLLEQRDGDEALAI 482 Query: 688 -QGTDTYQA------WIDDCCDI------GENLWEESHSLAKSYSEYREQELNYDRKRIS 734 Q TD ++++ + + +SL + Y + K ++ Sbjct: 483 KQQTDPVIEFCQFLNFLEEARGLMMGGGGDSVKYTTRNSLYRVYLAFMAYAGRS--KPLN 540 Query: 735 TRTVTLNLKQKGFIGGIKREKIEKEW 760 +K + G + + + Sbjct: 541 VNDFGKAMKPAAKVYGHEYITRKVKG 566 >gi|306834495|ref|ZP_07467608.1| virulence-associated protein E [Streptococcus bovis ATCC 700338] gi|304423297|gb|EFM26450.1| virulence-associated protein E [Streptococcus bovis ATCC 700338] Length = 545 Score = 130 bits (325), Expect = 1e-27, Method: Composition-based stats. Identities = 64/521 (12%), Positives = 156/521 (29%), Gaps = 60/521 (11%) Query: 296 KLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKD---KNNVYIWSLTLDKIT 352 + + + + + F+D+ K+ L T D K + + Sbjct: 6 EQLDEIVPDNNFNDSSEKSQDKDEVMDTHLTTFKNIRQVLFDEVEKIKRDAYDRAYQEYM 65 Query: 353 ASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAG 412 N + + + N + + E K+ + Sbjct: 66 LEHENAEDKTARAYAEKARKKATPNTPLAVAIILKKYIHFVRIKPEAQNQKAPLYFYKPD 125 Query: 413 SIFSITSDLLDSSSRFLGEQDGI-------------------------------LDLETG 441 + + + L + TG Sbjct: 126 NGVYVEDNEFLQDLIMLIFPNATEKQAFDTLYKIAHQSPIKKIQGEYTAIGTQLYHNITG 185 Query: 442 QKVKPTKELYITKSTGTPFVEGEPSQEFL-----DLVSGYF-ESEEVMDYFTRCVGMALL 495 + ++ +T+ T + D + F +E+ + + ++ Sbjct: 186 KFEPFNPKIIVTRKIKTAYNPYAKEPTINGWKVTDWLKELFDGDKELYQLAIQIIKASIT 245 Query: 496 GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIR 555 G ++ + G GG+GK T L+ G + V + + + + ++R + Sbjct: 246 GQ-SLEKIFWLYGEGGTGKGTFQQLLINLVGLENVASLKITALNKSRFTTSI-------- 296 Query: 556 LMGSRIVIISETNENDEI-NAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHL 614 L+G +VI + ++ I + + + + GD MT YS + T N Sbjct: 297 LLGKSLVIGDDVQKDAIIKDTSDMFSLASGDIMTIEDKGKKPYS-LRLNMTVVQSSNGLP 355 Query: 615 FVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD 674 + A RR+ ++ F ++ + A K + + ++ +K I L+ Sbjct: 356 RMNGDVSAIDRRFRILVFSSKFKDK-PNPAIKKDYINRKKVLEYLVKLA---IETPLEDI 411 Query: 675 IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYR-EQELNYDRKRI 733 P+ E ++ + ++ + S + + Y +Q +Y R+ Sbjct: 412 NPKQSQTLLGEHQKDINPVLDFV----EKTFREDLASEFIPNDFIWYCWKQYQDYFRQPS 467 Query: 734 STRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPA 774 S + L+ + K ++ + + +++ G K Sbjct: 468 SKSSNGLHREIKQYLPTFFKAGVRTIPAGRQLHLGFYPKED 508 >gi|332767356|gb|EGJ97550.1| phage/plasmid primase [Shigella flexneri 2930-71] Length = 582 Score = 130 bits (325), Expect = 1e-27, Method: Composition-based stats. Identities = 78/566 (13%), Positives = 166/566 (29%), Gaps = 71/566 (12%) Query: 242 GSSKGKEIARRWSKQGSTYDEENFNYKWDTFDF-EEIGDTAKKRSTFTSLFYHHGKLIPK 300 S A++W +Q +N W + E+ + + + Sbjct: 25 AGSDAWSHAKQWQEQDGPASGDNVPPVWLGPNQLAELDALKIVPDGKKRVRLYQAGELDL 84 Query: 301 GLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLV 360 + ++ + W + + L Sbjct: 85 VETKKIGQKLAAADIQDANFYPEGMHVQKCENWRRYLNAERENIAAGLTMPEQKNTQLAQ 144 Query: 361 SMKEDVFDLSEEPED---NNKNSKSPRFWFNTDY-RRQNVEENSKAKSTAQSLEAGSIFS 416 + L E D ++ S+ W + +E + + + A Sbjct: 145 MADSERAQLLAERFDGVCVHQESEIVHVWRGGVWCPVSTMELSREMVAIYSEHRATFSKR 204 Query: 417 ITSDLLDS-----------SSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP 465 + ++ +++ S L +G LDL+TG+ T E +IT G + P Sbjct: 205 VINNAVEALKVIAAPMGEPSGDLLPFANGALDLKTGEFSPHTPENWITTHNGIEYTPPAP 264 Query: 466 SQ-------EFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTL 517 + F + + M + M + Q FI G GGSGKST Sbjct: 265 GENIRDNALNFHKWLEHAAGKDQRKMMRICAALYMIMANRYDWQMFIEATGDGGSGKSTF 324 Query: 518 MNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK 577 ++ G Q ++AE + + +++GSR++++++ + Sbjct: 325 THIASLLAGKQNTVSAEMTSLDDAGGR---------AQVVGSRLIVLADQPKYTGEGTG- 374 Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637 IK++TGGD + Y ++ N + RR ++ FD ++ Sbjct: 375 IKKITGGDPVEINPKYEKRFTAVI-RAVVLATNNNPMIFTERAGGVARRRVIFRFDNIVS 433 Query: 638 --NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEER-------- 687 +D +K+ + L + E E+R Sbjct: 434 EAEKDRELPEKI-AAEIPVIIRRLLA----------NFTDSEKARALLLEQRDGDEALAI 482 Query: 688 -QGTDTYQA------WIDDCCDI------GENLWEESHSLAKSYSEYREQELNYDRKRIS 734 Q TD ++++ + + +SL + Y + K ++ Sbjct: 483 KQQTDPVIEFCQFLNFLEEARGLMMGGGGDSVKYTTRNSLYRVYLAFMAYAGRS--KPLN 540 Query: 735 TRTVTLNLKQKGFIGGIKREKIEKEW 760 +K + G + + + Sbjct: 541 VNDFGKAMKPAAKVYGHEYITRKVKG 566 >gi|332759427|gb|EGJ89735.1| phage/plasmid primase [Shigella flexneri 2747-71] Length = 582 Score = 130 bits (325), Expect = 1e-27, Method: Composition-based stats. Identities = 78/566 (13%), Positives = 166/566 (29%), Gaps = 71/566 (12%) Query: 242 GSSKGKEIARRWSKQGSTYDEENFNYKWDTFDF-EEIGDTAKKRSTFTSLFYHHGKLIPK 300 S A++W +Q +N W + E+ + + + Sbjct: 25 AGSDAWSHAKQWQEQDGPASGDNVPPVWLGPNQLAELDALKIVPDGKKRVRLYQAGELDL 84 Query: 301 GLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLV 360 + ++ + W + + L Sbjct: 85 VETKKIGQKLAAADIQDANFYPEGMHVQKCENWRRYLNAERENIAAGLTMPEQKNTQLAQ 144 Query: 361 SMKEDVFDLSEEPED---NNKNSKSPRFWFNTDY-RRQNVEENSKAKSTAQSLEAGSIFS 416 + L E D ++ S+ W + +E + + + A Sbjct: 145 MADSERAQLLAERFDGVCVHQESEIVHVWRGGVWCPVSTMELSREMVAIYSEHRATFSKR 204 Query: 417 ITSDLLDS-----------SSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP 465 + ++ +++ S L +G LDL+TG+ T E +IT G + P Sbjct: 205 VINNAVEALKVIAEPMGEPSGDLLPFANGALDLKTGEFSPHTPENWITTHNGIEYTPPAP 264 Query: 466 SQ-------EFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTL 517 + F + + M + M + Q FI G GGSGKST Sbjct: 265 GENIRDNALNFHKWLEHAAGKDQRKMMRICAALYMIMANRYDWQMFIEATGDGGSGKSTF 324 Query: 518 MNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK 577 ++ G Q ++AE + + +++GSR++++++ + Sbjct: 325 THIASLLAGKQNTVSAEMTSLDDAGGR---------AQVVGSRLIVLADQPKYTGEGTG- 374 Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637 IK++TGGD + Y ++ N + RR ++ FD ++ Sbjct: 375 IKKITGGDPVEINPKYEKRFTAVI-RAVVLATNNNPMIFTERAGGVARRRVIFRFDNIVS 433 Query: 638 --NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEER-------- 687 +D +K+ + L + E E+R Sbjct: 434 EAEKDRELPEKI-AAEIPVIIRRLLA----------NFTDSEKARALLLEQRDGDEALAI 482 Query: 688 -QGTDTYQA------WIDDCCDI------GENLWEESHSLAKSYSEYREQELNYDRKRIS 734 Q TD ++++ + + +SL + Y + K ++ Sbjct: 483 KQQTDPVIEFCQFLNFLEEARGLMMGGGGDSVKYTTRNSLYRVYLAFMAYAGRS--KPLN 540 Query: 735 TRTVTLNLKQKGFIGGIKREKIEKEW 760 +K + G + + + Sbjct: 541 VNDFGKAMKPAAKVYGHEYITRKVKG 566 >gi|88807526|ref|ZP_01123038.1| ATPase-like protein [Synechococcus sp. WH 7805] gi|88788740|gb|EAR19895.1| ATPase-like protein [Synechococcus sp. WH 7805] Length = 854 Score = 130 bits (325), Expect = 1e-27, Method: Composition-based stats. Identities = 67/438 (15%), Positives = 137/438 (31%), Gaps = 42/438 (9%) Query: 345 SLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKS 404 +L + T + ++ DV +D + + P+ + R + +N K S Sbjct: 345 NLQFWRWTEELHHWERRSGHDVKHWLS--KDLERYYEPPQSERDIPRFRFSTLDNVKRIS 402 Query: 405 TAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGE 464 + LD S + +G+LD+ TG+ + E T + Sbjct: 403 GYLQ------IRLDDPRLDGSPHLIPFTNGVLDVTTGELLDHAPEHGCTYCIQGNYCAPG 456 Query: 465 P---SQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMN-L 520 F L+ + + + M + + + + + G GSGK L+N + Sbjct: 457 TGQLGPAFHHLLQTSY-DKAHHQMLRAGMRMIVDPTMPSGKALVLEGASGSGKGALVNGV 515 Query: 521 IKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQ 580 I+ F + D + + ++G R++ + + + + Sbjct: 516 IRRLFPTHAISALSRLDQLDGKEAIYQS-------VLGKRLITFGDLI-GKQSKYSAFYE 567 Query: 581 MTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDD--AWWRRYIVIPFDKPIAN 638 + +TAR + + + + K + D W RR V+P I Sbjct: 568 LVDQSMITARRLFESEEVTVDFAGRFVLAMTKMPMFVDDDGNTGWMRRAFVVP---TIPG 624 Query: 639 R------DASFAQKLETKYTLEAKKWFLKGVKAY---ISKGLDVDIPEVCLKAKEEERQG 689 D L T W L + I +G D E + + + Sbjct: 625 ERDRSLYDGDLEADLAT-EVGAIASWALAMDRKEAIDILQGRSDD--EEVQRVQAKAAAS 681 Query: 690 TDTYQAWIDDCCDIGENLWEESH-SLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFI 748 TD+ +ID C + E L +Y + +K ++ L++ Sbjct: 682 TDSLSEFIDHCLVPTDGTVEADQVDLIDAYRLFCHATG---KKALADARFIGQLRKALPH 738 Query: 749 GGIKREKIEKEWKSKRII 766 R ++ + R + Sbjct: 739 LHQPRRQLSRSVARDRGV 756 >gi|229583958|ref|YP_002842459.1| Bifunctional DNA primase/polymerase [Sulfolobus islandicus M.16.27] gi|228019007|gb|ACP54414.1| Bifunctional DNA primase/polymerase [Sulfolobus islandicus M.16.27] Length = 865 Score = 129 bits (324), Expect = 2e-27, Method: Composition-based stats. Identities = 97/691 (14%), Positives = 211/691 (30%), Gaps = 77/691 (11%) Query: 8 EQAKQAIHNGFKLIPLRLGDKRP-QRLGKWEEQLLSSEKIDKLPACG---FGFVCGVGEQ 63 + A G +IPL+ +K P + K++++L + ++I K +CG Sbjct: 7 DYALFYHTYGLSVIPLKPKEKVPLIKWEKYQKELATIDEIKKWFENNENNIAIICGKVSG 66 Query: 64 PLYAFDIDSKDEKTANTFKDTFEI-------LHGTPIVRIGQKPKILIPFRMNKEGIKKK 116 L D D D + F E ++ T +V+ G+ I R++ + K Sbjct: 67 NLVVIDFD--DAEIYEKFLKEVEKDSELAEIINNTWLVKTGK--GYHIYLRIDIDKPVKI 122 Query: 117 KTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKF 176 + +D+ G G Y VA + K Y + + + +++EE + + Sbjct: 123 GKLQK----IDVKGEGGYVVAPPSIHPSGKTYEFVR-FSKTTGHEIRVITEEQYKKILTI 177 Query: 177 FQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIP--VVM 234 + +T + D ++++ + I + + G + + Sbjct: 178 LENVTESTITDTAIEK----GEIRHDKKLSENTILRIIDILSPVYKEGVRHDIVMYLSGW 233 Query: 235 AVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFE---EIGDTAKKRSTFTSLF 291 + + + + + +E N + T + + K R +S Sbjct: 234 ----LYKAGIELESAKKLILLLCDKFKDEECNDRIYTLERTYGLKGNQPPKDRLKTSSGL 289 Query: 292 YHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLY---TADTKAWYKKDKNNVYIWSLTL 348 Y + A + + S + L + + + I + T Sbjct: 290 YEIFSNVLTEADALGRIRQLEEILESAEPQPKVLIELLNYEKEIFAIAHLERCEILTATR 349 Query: 349 --DKITASIMNFLVSMKEDVFDLSEEPEDNNKN----SKSPRFWFNTDYRRQNVEENSKA 402 ++ + LV + K W+ R+ EN Sbjct: 350 KVEENGQDKIERLVYKDRVIIGCPRSVTAIESPFSQVIKYDFAWYIPSQNREIKLENVTV 409 Query: 403 KSTAQSLEAGSIFSITSDLLDSSSRFLG------EQDGILDLETGQKVKPTKELYITKST 456 L+A + + D + L + + ++ K Sbjct: 410 DEILAYLKANGLVLRKNLAEDVLNAILNAMLRKKIANVKTGFDAPGFYWHDNKILANKI- 468 Query: 457 GTPFVEGEPSQEFLDLVSGYFESEEVMDY----------FTRCVGMALLGGNKAQR---- 502 + +E L+L++ + A+ K ++ Sbjct: 469 EVRKHTSDEVREALELLNELINTWFARAKEQFVTAVKLGLLLPFSFAVKQKFKNEKGFLP 528 Query: 503 FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIV 562 ++++ G +GK+T +I Y ++N + + EA + I Sbjct: 529 WLYLYGKKNTGKTTTAEIILYI---YNIMNRQHELGVGEVNTEAKLGSVLASDTFPHVIN 585 Query: 563 IISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS--ESPASFTPFIVPNKHLFVRNPD 620 + + +N + + G + AR + N E PA + I N+ R D Sbjct: 586 EGASLFDKPGLNEVIKQAIEG---VIARQRFENKTIIKEYPAFASLIITTNEM---RITD 639 Query: 621 DAWW-RRYIVIPFDKPIANRDASFAQKLETK 650 DA +R ++I + PI + K + Sbjct: 640 DALTQKRLVLIRY--PIEAQADQVKIKEFRE 668 >gi|30062663|ref|NP_836834.1| bacteriophage P4 DNA primase [Shigella flexneri 2a str. 2457T] gi|56479831|ref|NP_707046.2| bacteriophage P4 DNA primase [Shigella flexneri 2a str. 301] gi|30040911|gb|AAP16641.1| Bacteriophage P4 DNA primase [Shigella flexneri 2a str. 2457T] gi|56383382|gb|AAN42753.2| Bacteriophage P4 DNA primase [Shigella flexneri 2a str. 301] gi|313650411|gb|EFS14818.1| putative DNA primase [Shigella flexneri 2a str. 2457T] gi|333019317|gb|EGK38600.1| phage/plasmid primase [Shigella flexneri K-304] Length = 582 Score = 129 bits (323), Expect = 2e-27, Method: Composition-based stats. Identities = 61/365 (16%), Positives = 119/365 (32%), Gaps = 55/365 (15%) Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ-------EFLDLVSGYFE- 478 L +G LDL+TG+ T E +IT G + P + F + Sbjct: 226 DLLPFANGALDLKTGEFSPHTPENWITTHNGIEYTPPAPGENIRDNALNFHKWLEHAAGK 285 Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538 + M + M + Q FI G GGSGKST ++ G Q ++AE + + Sbjct: 286 DQRKMMRICAALYMIMANRYDWQMFIEATGDGGSGKSTFTHIASLLAGKQNTVSAEMTSL 345 Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598 +++GSR++++++ + IK++TGGD + Y ++ Sbjct: 346 DDAGGR---------AQVVGSRLIVLADQPKYTGEGTG-IKKITGGDPVEINPKYEKRFT 395 Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAK 656 N + RR ++ FD ++ +D +K+ Sbjct: 396 AVI-RAVVLATNNNPMIFTERAGGVARRRVIFRFDNIVSEAEKDRELPEKI-AAEIPVII 453 Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEER---------QGTDTYQA------WIDDCC 701 + L + E E+R Q TD ++++ Sbjct: 454 RRLLA----------NFTDSEKARALLLEQRDGDEALAIKQQTDPVIEFCQFLNFLEEAR 503 Query: 702 DI------GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755 + + +SL + Y + K ++ +K + G + Sbjct: 504 GLMMGGGGDSVKYTTRNSLYRVYLAFMAYAGRS--KPLNVNDFGKAMKPAAKVYGHEYIT 561 Query: 756 IEKEW 760 + + Sbjct: 562 RKVKG 566 >gi|217979240|ref|YP_002363387.1| hypothetical protein Msil_3116 [Methylocella silvestris BL2] gi|217504616|gb|ACK52025.1| conserved hypothetical protein [Methylocella silvestris BL2] Length = 841 Score = 129 bits (323), Expect = 2e-27, Method: Composition-based stats. Identities = 53/298 (17%), Positives = 94/298 (31%), Gaps = 39/298 (13%) Query: 11 KQAIHNGF----KLIP----------LRLG--DKRPQRL---------GKWEEQLLSSEK 45 K+ G+ LIP +R K P + W+ + Sbjct: 38 KELWDRGYRALRPLIPHDATMSESSNIRPELIGKIPGKRLANGTWVGFHDWQTHSTTDAD 97 Query: 46 IDKLP--ACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKIL 103 + + G G + G+ + A DID+ D + + + G R+G+ PK L Sbjct: 98 LVEWASWGAGVGLMTGLVSS-VLAVDIDTLDHGLSARAAELMREMLGPARPRVGRAPKAL 156 Query: 104 IPFRMNKE---GIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVE 160 +R + K E + +++ + V HPKT K Y+W FK Sbjct: 157 FLYRCAQPVPFLKVKFDGPEGKRELVELSTDRRQIVMRGTHPKTGKPYSWPEGLPPFK-- 214 Query: 161 DTPLLSEEDVEYLFKFFQEITV--PLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFG 218 + ++ E VE F + K S A S Sbjct: 215 ELTEVTPEQVEAFFLELSHVMPNAEFRGRKLSAGSGSGGDQTKFTGSAEAVARAVRSLPN 274 Query: 219 EEFYNGSHDEWIPVVMAVHHET-RGSSKGKEIARRWSKQ---GSTYDEENFNYKWDTF 272 E + D W+ ++ A+ + +A+ WS++ D + +W Sbjct: 275 TEALYPTRDSWLDMLYAIKAALPDDPGAAEALAQEWSEKYDGPDGNDPDYVAQEWRKM 332 >gi|284162709|ref|YP_003401332.1| Bifunctional DNA primase/polymerase [Archaeoglobus profundus DSM 5631] gi|284012706|gb|ADB58659.1| Bifunctional DNA primase/polymerase [Archaeoglobus profundus DSM 5631] Length = 1107 Score = 128 bits (322), Expect = 3e-27, Method: Composition-based stats. Identities = 116/830 (13%), Positives = 223/830 (26%), Gaps = 139/830 (16%) Query: 8 EQAKQAIHNGFKLIPL---------RLGDKRPQ-RLGKWEEQLLSSEKIDKLPAC----- 52 E AK + GF +IP+ G+K +++++ + E+++K Sbjct: 6 EWAKHYLEQGFSVIPVIIVPPSENNPKGNKISAVEWKEFQQRRPTLEELEKWFKHPDFPA 65 Query: 53 -------GFGFVCGVGEQPLYAFDIDSKD------EKTANTFKDTFEILHGTPIVRIGQK 99 G V G L D DS++ + A+ D + + T IV G+ Sbjct: 66 LRKGNKLGLAIVTGEISGNLTVVDFDSREVMSEVLAELADKHPDLYGKILDTWIVETGK- 124 Query: 100 PKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKV 159 ++ K + +DI G Y VA + K Y + P Sbjct: 125 -GFHYYLKVKNPDPNKFTNRIGIRPGVDIRANGGYVVAPPSPHPSGKVYRFVHKPE---- 179 Query: 160 EDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGE 219 + L+ E+ + L F + + + + K + EI L + Sbjct: 180 -EIAELTWEEYQTLLSFLEGKKRTIPRVEV-----KDGEGRELEESKIVEIVNILRPIYK 233 Query: 220 EFYNG----SHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFN-YKWDTFDF 274 Y S W+ ++ R + +E N Y D Sbjct: 234 VGYRDLVVFSLTGWLKKAGVSYNSARKIVELL---------AEKDEELNLRLYVLDRTYG 284 Query: 275 EEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAM--FSIYKKGHFLYTADTKA 332 ++ + + + A + + S +K F K Sbjct: 285 LRGNPPTEEELKGKAGLQEIAETLLGEERALDLIRNLEEILGKSSPFKDSIFSLIDFRKK 344 Query: 333 WYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYR 392 Y I + + + I+ + + E ED F+ Sbjct: 345 AYYVANPKRGIIARAFEDKSGGIV-YEKIVAEICPVKVVVYEDPLGGLTKFEIEFHGFRN 403 Query: 393 RQN-VEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELY 451 E S QS + D L S + G ++ + Sbjct: 404 LTIGPAELDVVISRLQSEGVVKHSRLLRDALSSIISAF-IRKGKAEIRRELEKPGFY-YI 461 Query: 452 ITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRF-------- 503 + + E S+E L +E+ + G K Sbjct: 462 NGQIKAVKWQPEEFSKEDLAKALKLL--DELRTKWYSKAGKRFTTMIKWGLIAPFAYAIK 519 Query: 504 ------------IHIRGVGGSGKSTLMNLIKYAF------GNQYVINAEASDIMQNRPPE 545 + G +GK+T+ I + G + +A ++ Sbjct: 520 QIRGTIAVHFPDLVAYGARNTGKTTIGAQIILSIWNPPEEGRIVRGSGDADTKAKHGRLR 579 Query: 546 AGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNT-YSESPASF 604 + P ++ + E + R + + Y E P+ Sbjct: 580 SLTTFPVVVNEVEGIFNNKELLEEYKSAVENRF----------VRGKHSHGVYIEFPSLA 629 Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVK 664 F+ N L + + A +R+ I F +++ + T+ L G Sbjct: 630 PFFMTMNGQLPL-DGTGAVRKRFFGIHF--SLSDEIPQHEIEKFTEEVLPRL-----GDL 681 Query: 665 AYISKGLDVDIPEVCLKAKEEER-------------QGTDTYQAW--------------- 696 ++ + I E + KE + D W Sbjct: 682 RFLGSFIFKKISENPERLKEAWQVLATELLREAFEFAELD-VPEWVNEFYEGETEEEVNE 740 Query: 697 -IDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK 745 I++ +I L E ++L Y E ++ T+ LK Sbjct: 741 TINE--EIRARLLESINNLYARYISRIEIVGENQNDLYTSTTLERRLKAL 788 >gi|332758300|gb|EGJ88623.1| phage/plasmid primase [Shigella flexneri 4343-70] Length = 498 Score = 128 bits (322), Expect = 3e-27, Method: Composition-based stats. Identities = 61/365 (16%), Positives = 118/365 (32%), Gaps = 55/365 (15%) Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ-------EFLDLVSGYFE- 478 L +G LDL+TG+ T E +IT G + P + F + Sbjct: 142 DLLPFANGALDLKTGEFSPHTPENWITTHNGIEYTPPAPGENIRDNALNFHKWLEHAAGK 201 Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538 + M + M + Q FI G GGSGKST ++ G Q ++AE + + Sbjct: 202 DQRKMMRICAALYMIMANRYDWQMFIEATGDGGSGKSTFTHIASLLAGKQNTVSAEMTSL 261 Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598 +++GSR++++++ + IK++TGGD Y ++ Sbjct: 262 DDAGGR---------AQVVGSRLIVLADQPKYTGEGTG-IKKITGGDPAEINPKYEKRFT 311 Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAK 656 N + RR ++ FD ++ +D +K+ Sbjct: 312 AVI-RAVVLATNNNPMIFTERAGGVARRRVIFRFDNIVSEAEKDRELPEKI-AAEIPVII 369 Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEER---------QGTDTYQA------WIDDCC 701 + L + E E+R Q TD ++++ Sbjct: 370 RRLLA----------NFTDSEKARALLLEQRDGDEALAIKQQTDPVIEFCQFLNFLEEAR 419 Query: 702 DI------GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755 + + +SL + Y + K ++ +K + G + Sbjct: 420 GLMMGGGGDSVKYTTRNSLYRVYLAFMAYAGRS--KPLNVNDFGKAMKPAAKVYGHEYIT 477 Query: 756 IEKEW 760 + + Sbjct: 478 RKVKG 482 >gi|333005686|gb|EGK25204.1| phage/plasmid primase, P4 family [Shigella flexneri K-218] Length = 535 Score = 128 bits (322), Expect = 3e-27, Method: Composition-based stats. Identities = 61/365 (16%), Positives = 118/365 (32%), Gaps = 55/365 (15%) Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ-------EFLDLVSGYFE- 478 L +G LDL+TG+ T E +IT G + P + F + Sbjct: 179 DLLPFANGALDLKTGEFSPHTPENWITTHNGIEYTPPAPGENIRDNALNFHKWLEHAAGK 238 Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538 + M + M + Q FI G GGSGKST ++ G Q ++AE + + Sbjct: 239 DQRKMMRICAALYMIMANRYDWQMFIEATGDGGSGKSTFTHIASLLAGKQNTVSAEMTSL 298 Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598 +++GSR++++++ + IK++TGGD Y ++ Sbjct: 299 DDAGGR---------AQVVGSRLIVLADQPKYTGEGTG-IKKITGGDPAEINPKYEKRFT 348 Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAK 656 N + RR ++ FD ++ +D +K+ Sbjct: 349 AVI-RAVVLATNNNPMIFTERAGGVARRRVIFRFDNIVSEAEKDRELPEKI-AAEIPVII 406 Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEER---------QGTDTYQA------WIDDCC 701 + L + E E+R Q TD ++++ Sbjct: 407 RRLLA----------NFTDSEKARALLLEQRDGDEALAIKQQTDPVIEFCQFLNFLEEAR 456 Query: 702 DI------GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755 + + +SL + Y + K ++ +K + G + Sbjct: 457 GLMMGGGGDSVKYTTRNSLYRVYLAFMAYAGRS--KPLNVNDFGKAMKPAAKVYGHEYIT 514 Query: 756 IEKEW 760 + + Sbjct: 515 RKVKG 519 >gi|333004948|gb|EGK24468.1| phage/plasmid primase, P4 family [Shigella flexneri VA-6] Length = 582 Score = 127 bits (319), Expect = 6e-27, Method: Composition-based stats. Identities = 78/566 (13%), Positives = 166/566 (29%), Gaps = 71/566 (12%) Query: 242 GSSKGKEIARRWSKQGSTYDEENFNYKWDTFDF-EEIGDTAKKRSTFTSLFYHHGKLIPK 300 S A++W +Q +N W + E+ + + + Sbjct: 25 AGSDAWSHAKQWQEQDGPASGDNVPPVWLGPNQLAELDALKIVPDGKKRVRLYQAGELDL 84 Query: 301 GLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLV 360 + ++ + W + + L Sbjct: 85 VETKKIGQKLAAADIQDANFYPEGMHVQKCENWRRYLNAERENIAAGLTMPEQKNTQLAQ 144 Query: 361 SMKEDVFDLSEEPED---NNKNSKSPRFWFNTDY-RRQNVEENSKAKSTAQSLEAGSIFS 416 + L E D ++ S+ W + +E + + + A Sbjct: 145 MADSERAQLLAERFDGVCVHQESEIVHVWRGGVWCPVSTMELSREMVAIYSEHRATFSKR 204 Query: 417 ITSDLLDS-----------SSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP 465 + ++ +++ S L +G LDL+TG+ T E +IT G + P Sbjct: 205 VINNAVEALKVIAEPMGEPSGDLLPFANGALDLKTGEFSPHTPENWITTHNGIEYTPPAP 264 Query: 466 SQ-------EFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTL 517 + F + + M + M + Q FI G GGSGKST Sbjct: 265 GENIRDNALNFHKWLEHAAGKDQRKMMRICAALYMIMANRYDWQMFIEATGDGGSGKSTF 324 Query: 518 MNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK 577 ++ G Q ++AE + + +++GSR++++++ + Sbjct: 325 THIASLLAGKQNTVSAEMTSLDDAGGRP---------QVVGSRLIVLADQPKYTGEGTG- 374 Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637 IK++TGGD + Y ++ N + RR ++ FD ++ Sbjct: 375 IKKITGGDPVEINPKYEKRFTAVI-RAVVLATNNNPMIFTERAGGVARRRVIFRFDNIVS 433 Query: 638 --NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEER-------- 687 +D +K+ + L + E E+R Sbjct: 434 EAEKDRELPEKI-AAEIPVIIRRLLA----------NFTDSEKARALLLEQRDGDEALAI 482 Query: 688 -QGTDTYQA------WIDDCCDI------GENLWEESHSLAKSYSEYREQELNYDRKRIS 734 Q TD ++++ + + +SL + Y + K ++ Sbjct: 483 KQQTDPVIEFCQFLNFLEEARGLMMGGGGDSVKYTTRNSLYRVYLAFMAYAGRS--KPLN 540 Query: 735 TRTVTLNLKQKGFIGGIKREKIEKEW 760 +K + G + + + Sbjct: 541 VNDFGKAMKPAAKVYGHEYITRKVKG 566 >gi|74311430|ref|YP_309849.1| bacteriophage P4 DNA primase [Shigella sonnei Ss046] gi|73854907|gb|AAZ87614.1| bacteriophage P4 DNA primase [Shigella sonnei Ss046] Length = 495 Score = 127 bits (319), Expect = 7e-27, Method: Composition-based stats. Identities = 57/396 (14%), Positives = 122/396 (30%), Gaps = 64/396 (16%) Query: 267 YKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYN----KAMFSIYKKG 322 W + E + A+K+ ++ + + + + + Y Sbjct: 112 ENWREYLERERAEQAEKKKVVELPVKKKERVKDDNASSLALNQMGASQRGEVLLAHYGGE 171 Query: 323 HFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKS 382 + D + V+ ++ + + +D Sbjct: 172 LAI---------HADSDTVHHYNGVVWEP---------------------VQDKELQRAM 201 Query: 383 PRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQ 442 + + + + S + SL +++ +G +G+ D TG Sbjct: 202 AQIFIDAEISYSQNAIKSAVDTMKLSLPVMG---------NTARNLIGFSNGVFDTRTGN 252 Query: 443 KVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVS-GYFESEEVMDYFTRCVGMAL 494 + K ++ ++ PF + F + E++ D + M L Sbjct: 253 FREHNKNDWLLIASELPFSPPAEGETLATHAPNFWKWLRRSVAENDRKADRVLAVLFMVL 312 Query: 495 LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLI 554 Q FI + G GGSGKS + + G ++A + R Sbjct: 313 ANRYDWQLFIEVTGPGGSGKSVMAEICTMLAGKANTVSASMKALEDAR---------ERA 363 Query: 555 RLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHL 614 ++G ++I+ + A IK +TGGD + + YS + + N + Sbjct: 364 LVVGFSLIIMPDMTRYAGDGAG-IKAITGGDKVAIDPKHKAPYSTRIPAVVLAV-NNNAM 421 Query: 615 FVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLE 648 + RR ++ F + + RD A+K+E Sbjct: 422 SFSDRSGGISRRRVIFNFSEVVPENERDPMLAEKIE 457 >gi|10956537|ref|NP_043130.1| DNA primase [Lactobacillus delbrueckii] gi|971480|emb|CAA90741.1| DNA primase [Lactobacillus delbrueckii] Length = 598 Score = 127 bits (318), Expect = 8e-27, Method: Composition-based stats. Identities = 52/404 (12%), Positives = 120/404 (29%), Gaps = 44/404 (10%) Query: 381 KSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLD--SSSRFLGEQDGILDL 438 K+ + + + + + + + SD L ++ RF+ ++G+ D+ Sbjct: 165 KTKLYDKSRKSIEKLMLCVENTLTERARNDVYEWIRVESDTLAYVTNPRFIPFRNGVYDM 224 Query: 439 ETGQKVKPTKELYITKSTGTPFVEGEPSQ-----------EFLDLVSGYFE--SEEVMDY 485 + + + + + + ++++ +S E Sbjct: 225 QQHKLTPFSPKHPFLYKLPFDYNPKATQEPEFGSKHWKLSKWINALSMSDGYFDENKNKL 284 Query: 486 FTRCVGMAL---LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542 + + AL ++ G G SGK T LI G V + + ++ Sbjct: 285 IWQILACALHLHSPAGDLAFWLIDNGHGRSGKGTFQALITNLAGVNNVGSLKIAEF---- 340 Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602 L+ +VI + + + + D + Y + Sbjct: 341 -----GHRFRTAALL-KPVVIGDDNPPTYISDNSNFRSAVTHDQVFVETKGKQGY-DIYP 393 Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKW-FLK 661 N ++ A RR VI F+ + K + + +W LK Sbjct: 394 RSLIIQSMNNFPKFKDTTFANLRRQRVIKFNHEFKEGEFDPNIKGKYMQDPKLLEWLALK 453 Query: 662 GVKAYISKGLDVD---IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSL-AKS 717 + + LD+D + E ++ D + + S L Sbjct: 454 IITEEEAGNLDIDNIVNTSESDELLEGMQRDNDPVFNFASELLTGDIKSTVFSTDLMYNI 513 Query: 718 YSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWK 761 + + E + V++N++ + F +K+ + WK Sbjct: 514 FLAWNED----------SEHVSINMRPRRFKNELKQSVEKLGWK 547 >gi|331028101|ref|YP_004421815.1| integrase [Roseobacter phage RDJL Phi 1] gi|301341564|gb|ADK73448.1| integrase [Roseobacter phage RDJL Phi 1] Length = 802 Score = 127 bits (318), Expect = 9e-27, Method: Composition-based stats. Identities = 90/656 (13%), Positives = 182/656 (27%), Gaps = 98/656 (14%) Query: 9 QAKQAIHNGFKLIPL------------RLGDKRPQRLGKWEEQLLSSEKIDKL--PACGF 54 Q K + G +LIPL + + W ++ S+ Sbjct: 9 QLKPYLAAGMQLIPLHHHTDEDEYKGKKRNRGKSPVDKNWMKRTYKSDLQVDYMEEGYNV 68 Query: 55 GFVCGVGEQPLYAFDIDSK----------DEKTANTFKDTFEILHGTPIVRIGQKPKILI 104 G G G+ DID + D KD + P V G L Sbjct: 69 GVRLGAGD---LVLDIDPRGFPEGETLATDNPFKRLCKDVGLNVDEFPRVETGSGG--LH 123 Query: 105 PFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNI-HPKTKKEYTWTTPPHRFKVEDTP 163 + E + + + ++ G+ V+ HP TK Y+W TP Sbjct: 124 IYMSKPEDVSTRDSLNDQYPGVEFKSFGRQVVSAGSIHPDTKLPYSWDFLYPELDELGTP 183 Query: 164 LLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYN 223 + ++ + T + ++E A + + Sbjct: 184 SAPKLLIDLI-------------------RRPTGSAATGGGEHDQEELAEMLDQLDPEDF 224 Query: 224 GSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEE--NFNYKWDTFDFEEIGDTA 281 HD W+ ++ A HH T G G++ W + Y + +WD+ + G Sbjct: 225 SDHDSWLTLMQACHHATAGD--GRQEFIEWCTRDPEYSDHGTIIGLRWDSLHADADGARV 282 Query: 282 KKRSTFTSLFYH-HGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNN 340 R+ + G+LIP+ A F D + Sbjct: 283 TYRTLHKFMRDKGAGELIPRTPAADDFDDLDPDDVPDEAFDEET---------------P 327 Query: 341 VYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENS 400 + L+K+ + K V +P+ + + ++ Sbjct: 328 EHEKKGPLEKMNDRYCAVMDGGKFRVMWEVLDPDSGDAKEGIAPR-KCWVSATKFDFQSF 386 Query: 401 KAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPF 460 A Q + + ++ +G++ + + ++ TG Sbjct: 387 LANRRVQQGDRAVPIAEAWQEWGGRRQY----NGVIFDP-----ERDHKGFLNLWTGWAV 437 Query: 461 VEGEPSQEF---LDLVSGYF--ESEEVMDYFTRCVGMAL-LGGNKAQRFIHIRGVGGSGK 514 + + +L+S E V +Y + G+ A+ I +G G GK Sbjct: 438 TPAKKDDGWSYLNELLSDVLCDGDEAVYEYVMNWAAYMIQHPGSPAEVAICFQGGKGVGK 497 Query: 515 STLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISE-TNENDEI 573 T + G + + + L + E D+ Sbjct: 498 GTWFRTLAQLAGRHGMQITSSEHLTGRFND----------HLRDCIFLFADEAIKAYDKD 547 Query: 574 NAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIV 629 +++K + + + + N+ F+ + RR+++ Sbjct: 548 GESRLKGLITEPTLVYEGKGKDAKRG-KNRLHVGMASNEDWFIPMGLEG-ERRFLL 601 >gi|289168832|ref|YP_003447101.1| phage-related DNA primase [Streptococcus mitis B6] gi|307711139|ref|ZP_07647561.1| poxvirus D5 protein-like family protein [Streptococcus mitis SK321] gi|288908399|emb|CBJ23241.1| phage-related DNA primase [Streptococcus mitis B6] gi|307617101|gb|EFN96279.1| poxvirus D5 protein-like family protein [Streptococcus mitis SK321] Length = 498 Score = 126 bits (317), Expect = 1e-26, Method: Composition-based stats. Identities = 56/340 (16%), Positives = 121/340 (35%), Gaps = 25/340 (7%) Query: 436 LDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFL-----DLVSGYF-ESEEVMDYFTRC 489 + +TG + T E+ T+ T + G + F +E+ + + Sbjct: 128 YNAKTGIFEETTPEITATRKIKTGYSPGAEEPIINGWKPTAWLLELFDGDKELYNLAIQI 187 Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549 + ++ G Q+ + G GG+GK T L+ G + V + + + + +++ + Sbjct: 188 IKASVTGQ-SLQKIFWLFGEGGTGKGTFQQLLINLVGMENVASLKITGLTKSQFSTSI-- 244 Query: 550 NPSLIRLMGSRIVIISETNENDEI-NAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFI 608 L+G +VI + ++ I + + + + GD MT YS + T Sbjct: 245 ------LLGKSLVIGDDVQKDAVIRDTSDMFSLATGDIMTIEDKGKRPYS-IRLNMTVVQ 297 Query: 609 VPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYIS 668 N + A RR+ ++PF K + + A K + E ++ +K I Sbjct: 298 SSNGLPRMNGDKSAIDRRFRILPFTKIFKG-NPNKAIKDDYINRKEVLEYLVKLA---IE 353 Query: 669 KGLDVDIPEVCLKAKEEERQGTDTYQAWIDD-CCDIGENLWEESHSLAKSYSEYREQEL- 726 + P ++ EE + + ++ D + + + + + + E Sbjct: 354 TPIADINPTKSIEILEEHHKDMNPVIDFVSKFFTDELTSEFIPNSFVYHVWKGFLEYYGI 413 Query: 727 -NYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRI 765 + R + NL + GF G K ++ Sbjct: 414 KENRSEMGLHREIKSNLPE-GFAVGQKVIPAGQQIHKGFY 452 >gi|291618473|ref|YP_003521215.1| Alpha [Pantoea ananatis LMG 20103] gi|291153503|gb|ADD78087.1| Alpha [Pantoea ananatis LMG 20103] Length = 774 Score = 126 bits (316), Expect = 1e-26, Method: Composition-based stats. Identities = 56/373 (15%), Positives = 116/373 (31%), Gaps = 64/373 (17%) Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVE-------GEPSQEFLDLVSGYF 477 + +G ++G LD +G +E ++ + + + F + Sbjct: 407 QRQLIGFRNGALDTRSGTFSPHRRENWLRTLSDVDYTHPVHGETLERHAPHFWQWLDRTA 466 Query: 478 E-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEAS 536 S E D + M L Q F+ + G GGSGKS + + G ++A Sbjct: 467 GRSAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATMLAGTDNAVSAIIE 526 Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNT 596 + +R ++G ++ + + + A IK +TGG + Sbjct: 527 TLEYSR---------ERASVIGYSLIRLPDQEKWSGDGAG-IKAITGGMRCPLTPSTATP 576 Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLE 654 + V N + + RR +++ F + I RD QK++ Sbjct: 577 TRP-TSRRVILAVNNNPMRFTDRSGGVSRRRVILHFAEIIPANERDPQLKQKIQ-AELAV 634 Query: 655 AKKWFLKGVKAYISKGLDVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCC---- 701 + ++ P+ +++ ++ TD + C Sbjct: 635 IVRQLMQ----------RFSSPQDARALLQQQQNSGEAMRIKRDTDPMVDF----CGYLF 680 Query: 702 -DIGENL----------WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGG 750 N + L +Y Y E R +S +T + L+ + Sbjct: 681 ATAEPNGLHMGNASIQPLQPRRYLYHAYLAYMEANGY--RNPLSMKTFSQALES--ILRE 736 Query: 751 IKREKIEKEWKSK 763 R +++ K+ Sbjct: 737 YGRSYLKRRTKTG 749 >gi|289569622|ref|ZP_06449849.1| phiRv1 phage protein [Mycobacterium tuberculosis T17] gi|289543376|gb|EFD47024.1| phiRv1 phage protein [Mycobacterium tuberculosis T17] Length = 240 Score = 126 bits (316), Expect = 2e-26, Method: Composition-based stats. Identities = 43/239 (17%), Positives = 69/239 (28%), Gaps = 22/239 (9%) Query: 300 KGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYK-----------KDKNNVYIWSLTL 348 + + D + K ++ + Y+ + W Sbjct: 8 TDYPDAPWIDRDGHVLIDDGGKPTQVHRGQARIAYRLAERYQDKLLHVAGIGWHSWDGRR 67 Query: 349 DKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQS 408 + E LS+ D + + E S Sbjct: 68 WAADDRGEAKRAVLAELRQALSDSLNDKELRADVRKC-----------ESASGVAGVLDL 116 Query: 409 LEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE 468 A F+ T LDS L +G LDL T + ITK + S Sbjct: 117 AAALVPFAATVADLDSDPHLLNVANGTLDLHTLKLRPHAPADRITKICRGAYQSDTESPL 176 Query: 469 FLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 + ++ E V + R G+ LLG + + GVG +GKS I+YA G+ Sbjct: 177 WQAFLTRVLPDEGVRGFVQRLAGVGLLGTVREHVLAILIGVGANGKSVFDKAIRYALGD 235 >gi|323139650|ref|ZP_08074692.1| Bifunctional DNA primase/polymerase [Methylocystis sp. ATCC 49242] gi|322395082|gb|EFX97641.1| Bifunctional DNA primase/polymerase [Methylocystis sp. ATCC 49242] Length = 265 Score = 126 bits (316), Expect = 2e-26, Method: Composition-based stats. Identities = 32/230 (13%), Positives = 65/230 (28%), Gaps = 17/230 (7%) Query: 10 AKQAIHNGFKLIPLRLGDKRP-QRLGKWEEQLLSSEKI----DKLPACGFGFVCGVGEQP 64 A+ + G+ ++PLR +KRP K + + + + + ++ P G V G Sbjct: 14 ARSYLARGWSVLPLRPREKRPLAAWRKLQRERPTEDDLVDWFERWPDANIGIVTGEVSN- 72 Query: 65 LYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQG 124 L D+D K + P V + + + + Sbjct: 73 LIVLDVDPKHGGDIALKQLERRYRPLPPTVEAVTGGGGRHFYFTHPGFLT--RNRAGLAQ 130 Query: 125 HLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPL 184 +D+ G G Y VA + + Y W + ++ PL + + Sbjct: 131 GVDLRGDGGYIVAPPSVHPSGRPYQWASGHGPDEIALAPL-PRWLLTTIHGARAG----- 184 Query: 185 VKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVM 234 + + N I + N + + Sbjct: 185 ---RSLNDWRQLVQEGVAEGQRNSSIASLTGHLLWHNVNPGVALELLLAW 231 >gi|291335967|gb|ADD95559.1| hypothetical protein [uncultured phage MedDCM-OCT-S09-C37] Length = 288 Score = 126 bits (316), Expect = 2e-26, Method: Composition-based stats. Identities = 33/224 (14%), Positives = 73/224 (32%), Gaps = 23/224 (10%) Query: 54 FGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGI 113 G G+ + D+D K E L G P+V ++ FR+ ++ Sbjct: 69 VGIFTGIRGNGIVFLDVD---RNLKRCMKQWGESLAGAPMVTSTKQNAAKFLFRVPEKLW 125 Query: 114 KKKKTTESTQGHLDILGCG-QYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEY 172 K+ K + +IL + V + +P + P+ + + Sbjct: 126 KEVKGRGLGKQDYEILWNSKKQGVIFGAYPGGDNSEPGEYKFEG-DLNSIPVAPDWLLAE 184 Query: 173 LFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPV 232 + + + I + +++ ++ + G+ GS D W+ + Sbjct: 185 MREPPKTIIK--------RDLDFSDRSDDEIFQIVKDCLDVIPNKGK----GSRDHWVKI 232 Query: 233 VMAVHHETRGSSKGKEIARRWSKQGSTYDEEN-----FNYKWDT 271 MA+ + + G + WS ++EE + W + Sbjct: 233 GMAI-NSALPTEAGMMLWSSWSSDDPDFEEEWKEDNPCEHIWHS 275 >gi|227828130|ref|YP_002829910.1| Bifunctional DNA primase/polymerase [Sulfolobus islandicus M.14.25] gi|227459926|gb|ACP38612.1| Bifunctional DNA primase/polymerase [Sulfolobus islandicus M.14.25] Length = 855 Score = 124 bits (312), Expect = 5e-26, Method: Composition-based stats. Identities = 105/695 (15%), Positives = 222/695 (31%), Gaps = 83/695 (11%) Query: 8 EQAKQAIHNGFKLIPLRLGDKRPQ-RLGKWEEQLLSSEKIDKLPAC---GFGFVCGVGEQ 63 E A G +IPL+ +K P G+++++ S +I+K VCG Sbjct: 7 EHALFYHTYGLSVIPLKPKEKIPIVEWGEYQKERPSISEIEKWFKDTDNNIAIVCGKVSG 66 Query: 64 PLYAFDIDSKDEKTANTFKDTFEI-------LHGTPIVRIGQKPKILIPFRMNKEGIKKK 116 L D D D + F E ++ T +V G+ I R++ K Sbjct: 67 NLVVIDFD--DTEIYEKFLKEVEKDNELSESVNNTWLVETGK--GYHIYLRVD----NDK 118 Query: 117 KTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKF 176 + +DI G G Y VA + K Y + + + ++SEE + L Sbjct: 119 PVRTAKLPKIDIKGEGGYVVAPPSIHPSGKRYEFVR-FSKTTGHEIRVISEEQYQKLLAL 177 Query: 177 FQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAV 236 + IT V+++ S K + + +I A + G+ H+ + + + Sbjct: 178 LERITGVKVEEEVSGENRKFRELTSEKVLKIADIIAPIYKEGQR-----HNVIMYLSGWL 232 Query: 237 HHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFE---EIGDTAKKRSTFTSLFYH 293 + K++ + + N + T D + ++R +S + Sbjct: 233 YKANVSYESAKKLVEF---ICDKFGDNECNDRLYTLDRTYGLKGNQPPEERLKTSSGLFE 289 Query: 294 HGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITA 353 K A + + + + Y+K+ V + Sbjct: 290 LFKGSMSEEEAIERVRELEEILEASEPNPKV---IIERLNYEKEIYAVLNFDRCEVLTAI 346 Query: 354 SIMNFLVSMKEDV----FDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSL 409 + N L + +++ ++ W +R + L Sbjct: 347 RVDNKLNYKDRVIIGCPENVTAIISPFSQIITYDITWKIPTQKRSIKLDRVTIDEILAYL 406 Query: 410 EAGSIFSITSDLLDSSSRFLG--EQDGILDLETGQKVKPTKELYITKSTG---TPFVEGE 464 +A + D + L + G+ + +TG + + Sbjct: 407 KANGLVLRKYQAEDVLNAILNAMLRKGLANTKTGFDAPGFYWHGGKIIANKVEIRKPDKQ 466 Query: 465 PSQEFLDLVSGYFE------SEEVMDYFTRCVGMALLGGNKAQR--------FIHIRGVG 510 +E L+L++ + E+ + + + K + ++++ GV Sbjct: 467 ELKEALELLNEFVNVWFSKAKEQFVTTIKIGLLLPFSFTVKQKFANEKGFLPWLYLYGVR 526 Query: 511 GSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISET--- 567 SGK+T +I + F ++++ E GK + +G+ + + Sbjct: 527 DSGKTTTAEMILHIFN------------IKDKYHERGKGDVDTEAKLGAILASDTFPHVI 574 Query: 568 -NENDEINAAKIKQMTGG--DCMTARLNYGNTYS--ESPASFTPFIVPNKHLFVRNPDDA 622 + + + +M + TAR + N E PA I N+ R D+A Sbjct: 575 NEGSTLFDKPNLNEMIKQSVEGFTARQRFENKTIIKEYPAYAPLIITANQM---RITDEA 631 Query: 623 WW-RRYIVI--PFDKPIANRDASFAQKLETKYTLE 654 +R ++I P + + D ++ + Sbjct: 632 LTQKRLLIIRYPIEAKRSKDDIKEFREKVVPKLPK 666 >gi|330719217|ref|ZP_08313817.1| DNA primase [Leuconostoc fallax KCTC 3537] Length = 475 Score = 124 bits (311), Expect = 6e-26, Method: Composition-based stats. Identities = 55/417 (13%), Positives = 121/417 (29%), Gaps = 24/417 (5%) Query: 376 NNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGI 435 K++++ + +Q N K S + D + + ++G Sbjct: 68 TEKSARAYIEREALEKLKQYHAYNVKRMQDVSKTTLIQTISEHNPFEDQRTDIIAFKNGT 127 Query: 436 LDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALL 495 ++ETG + Y+ + + + S F + + +G A + Sbjct: 128 YEIETGNITPNQQSHYLVNGHDIDINKDGQANNIEEWGSYLFGNSW--QFIKELLGYAFI 185 Query: 496 GGNK--AQRFIHIRGVGGSGKSTLMNLIKY-AFGNQYVINAEASDIMQNRPPEAGKANPS 552 K I + +GG+GKS + I + G + ++ + I + A Sbjct: 186 PEYKTFNTIAIIVDEMGGTGKSYFFDSIVFPLLGTKNIVAKDMDTIAGSNGKS---ARFG 242 Query: 553 LIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612 LI L I + + ++ ++GGD + + N+ Sbjct: 243 LIGLFEKLSNIHLDLPDTRIEVPDTLRSLSGGDKIDVEAKNADA-LSLKFYALLLFGANQ 301 Query: 613 HLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQK--LETKYTL-----EAKKWFLKGVKA 665 + + A +R ++P P A K L A + + Sbjct: 302 TPNI-AVNVALSQRIKIVPVTAPRARERPQEQAKRALLWDEKQAVKEVGAFAYSVLTAYQ 360 Query: 666 YISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCC---DIGENLWEESHSLAKSYSEYR 722 + + A E + D ++ D +I + + + Sbjct: 361 QAKQRGKFSTSDEIETATREWLERQDLVTMFLKDAVQDTEIDFGGGATVVQTWELFELWL 420 Query: 723 EQELNYDRKRISTRTVTLNLKQKGFI--GGIKREKIEKEWKSKRIIKGLKLKPAFES 777 + + I + + ++Q G+ K + + GL L F Sbjct: 421 SENGINSK--IQRKQFNVKMEQLGYTKVKTRKHQSATETDNPVWSWDGLNLNKYFSD 475 >gi|288906322|ref|YP_003431544.1| phage associated protein [Streptococcus gallolyticus UCN34] gi|325979336|ref|YP_004289052.1| virulence-associated protein E [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288733048|emb|CBI14629.1| putative phage associated protein [Streptococcus gallolyticus UCN34] gi|325179264|emb|CBZ49308.1| virulence-associated protein E [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 542 Score = 124 bits (310), Expect = 7e-26, Method: Composition-based stats. Identities = 50/363 (13%), Positives = 120/363 (33%), Gaps = 32/363 (8%) Query: 377 NKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSR--------- 427 ++ +F + E+N + + + D L + Sbjct: 108 EAQNQKAPLYFYHPDKGIYTEDNEFLQDLIMLIFPNATEKQAFDTLYKIAHQSPIKKIQG 167 Query: 428 -FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFL-----DLVSGYF-ESE 480 + + + TG+ ++ +T+ T + D + F E Sbjct: 168 EYTAIGKQLYNNATGKFEPFNPQIIVTRKIKTAYNPYAKEPTINGWKVTDWLKELFDGDE 227 Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540 E+ + ++ G ++ + G GG+GK T L+ G + V + + +D+ + Sbjct: 228 ELYKLAIQIFKASVTGQ-SLEKIFWLYGEGGTGKGTFQQLLINLVGLENVASLKITDLNK 286 Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEI-NAAKIKQMTGGDCMTARLNYGNTYSE 599 +R + L+G +VI + ++ I + + + + GD MT YS Sbjct: 287 SRFTTSI--------LLGKSLVIGDDVQKDAIIKDTSDMFSLATGDIMTIEDKGKKPYS- 337 Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWF 659 + T N + A RR+ ++ F + + K + E ++ Sbjct: 338 LRLNMTVVQSSNGLPRMNGDVSAIDRRFRILTFSSKFKTK-PNPIIKKDYINRKEVLEYL 396 Query: 660 LKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIG-ENLWEESHSLAKSY 718 +K I L+ P+ E ++ + +++ + + + + + Sbjct: 397 VKLA---IETPLEDINPKKSQILLGEHQKDINPVLDFVEKTFKEDLASEFIPNDFIWYCW 453 Query: 719 SEY 721 +Y Sbjct: 454 KQY 456 >gi|269203634|ref|YP_003282903.1| putative phage primase [Staphylococcus aureus subsp. aureus ED98] gi|262075924|gb|ACY11897.1| putative phage primase [Staphylococcus aureus subsp. aureus ED98] Length = 618 Score = 123 bits (309), Expect = 9e-26, Method: Composition-based stats. Identities = 57/429 (13%), Positives = 144/429 (33%), Gaps = 38/429 (8%) Query: 358 FLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSI 417 ++ +F +E + N + R ++ + K I ++ Sbjct: 219 YVRFYNNVLFFRDDEGKFINDENMLKRKIHQFLDQKDSRNVEEVYKQLLLMS---PIITL 275 Query: 418 TSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF-LDLVSGY 476 D S + +G L G+ + + + + + E + ++ Sbjct: 276 GEDE----SFEIHFNNGYLH--EGRFYEMDSKTFTPYHIDVNYNPDAEAVEVVDNYLNHL 329 Query: 477 FES-EEVMDYFTRCVGMALL----GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVI 531 + E+ + L+ +F G GG+GK TL+ +I+ + Sbjct: 330 SNNNEDYKKLILEVLAHTLIINKEFKRMLAKFFIFVGDGGNGKGTLLTIIRAILNRKNCS 389 Query: 532 NAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK--IKQMTGGDCMTA 589 D+ R + + G + + + + N +K ++ D ++ Sbjct: 390 GLSIGDMADER---------YFVTMQGKLVNLGDDIEDEPINNKQMKALKNISTCDFVST 440 Query: 590 RLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLET 649 R + E + + N L +++ RR + +P A ++ +F QKL Sbjct: 441 RQLFQQAT-EVEMTLSLIFTSNHILKSWEKGESYKRRVMWLPIYTKPAKKEKNFIQKLTQ 499 Query: 650 KYTLEAK-KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLW 708 + LE K ++ + + + EV K ++ + + + ++ D + + + Sbjct: 500 QDALEYWIKLIVEAYERLYANE-KFTVSEVVEKFNDQYHEENNNFLLYLQD-FERKDFIN 557 Query: 709 EESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKG 768 + + Y + E+ D S + V +++K G+ + ++R+ Sbjct: 558 MKPKQIYDEYEAWAEEN---DLHPQSKKQVKDTIEKKY---GLVVKGRRINGSTQRVY-- 609 Query: 769 LKLKPAFES 777 ++L + Sbjct: 610 IELNEEVKE 618 >gi|254559012|ref|YP_003066107.1| hypothetical protein METDI0390 [Methylobacterium extorquens DM4] gi|254266290|emb|CAX22051.1| hypothetical protein METDI0390 [Methylobacterium extorquens DM4] Length = 1433 Score = 123 bits (309), Expect = 9e-26, Method: Composition-based stats. Identities = 43/217 (19%), Positives = 84/217 (38%), Gaps = 30/217 (13%) Query: 10 AKQAIHNGFKLIPLRLGDKR-PQ-------RLGKWEEQLLSSEKIDKL----PACGFGFV 57 + + G+ + P +R P + G+++++L + +ID P+ + Sbjct: 131 GPELVTRGWSVFPQTRDHRRGPGLVDNAALKWGEYKDRLPTLGEIDWWSRFCPSHNVACI 190 Query: 58 CGVGEQPLYAFDIDSKDEKTANTFKDTFEILHG-TPIVRIGQKPKILIPF---------- 106 G +A DID D + +N + G TP R+G+ P+I++ + Sbjct: 191 LGAASGGTWALDIDVSDAELSNAIVKLADDHLGYTPFSRVGRVPRIVLVYRQAPVSEVGA 250 Query: 107 ----RMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTT-PPHRFKVED 161 R++ + E + G +++LG G+ + +H T K + W PH E Sbjct: 251 DQVIRVSPHRFAARPG-EDSPGQIEVLGHGKPVTFFGLHHGTGKYFIWVDRSPHVLGPEH 309 Query: 162 TPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWT 198 PL++ + + + P K P WT Sbjct: 310 APLVTRQQYDAFLDAVHAL-HPFAKPAVHEAPDAAWT 345 >gi|319647186|ref|ZP_08001409.1| hypothetical protein HMPREF1012_02448 [Bacillus sp. BT1B_CT2] gi|317390745|gb|EFV71549.1| hypothetical protein HMPREF1012_02448 [Bacillus sp. BT1B_CT2] Length = 167 Score = 123 bits (308), Expect = 1e-25, Method: Composition-based stats. Identities = 32/145 (22%), Positives = 54/145 (37%), Gaps = 15/145 (10%) Query: 629 VIPFDKPIANR--DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEE 686 +IPF I D QKL +W ++G + +GL PE KA E Sbjct: 1 MIPFTVTIPKEKVDKKLPQKL-AAEMPGILRWAVEGCLKWQKEGLG--EPEAIKKATEGY 57 Query: 687 RQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746 R+ D ++++ C E+ L K Y ++ + + + R L+ +G Sbjct: 58 REDMDILGPFMEERCIQHPKAKVEAKELYKDYKDWCFENDEIE---LKNRAFYRQLEIRG 114 Query: 747 FIGGIKREKIEKEWKSKRIIKGLKL 771 F K + +K G+ L Sbjct: 115 F-------KKYRGNYNKNYFDGIGL 132 >gi|254504141|ref|ZP_05116292.1| hypothetical protein SADFL11_4180 [Labrenzia alexandrii DFL-11] gi|222440212|gb|EEE46891.1| hypothetical protein SADFL11_4180 [Labrenzia alexandrii DFL-11] Length = 1293 Score = 123 bits (307), Expect = 1e-25, Method: Composition-based stats. Identities = 65/352 (18%), Positives = 126/352 (35%), Gaps = 46/352 (13%) Query: 2 PVMQWKEQAKQAI----HNGFKLIPLRLGDKRPQRLGK-------WEEQ---------LL 41 PV + A + I N ++P DKRP + G W + L Sbjct: 70 PVRRSSYHAARLIARFGQNNVHVLPAMPKDKRPGKYGGSGWFGGTWGQFTNPGGETIYPL 129 Query: 42 SSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHG-TPIVRIGQKP 100 +D L G + G + A D+D D A F+ E+L +P RIG+ P Sbjct: 130 KERALDVLQHHGGAGITLGGHHNIAAIDMDVMDPVLAAEFESVLELLCDKSPFERIGKSP 189 Query: 101 KILIPFRMNKEGIKKKKTTE---STQGHLDILGCG-QYFVAYNIHPKTKKEYTWTT-PPH 155 K L +R K S + +++ Q+ V Y +H TK+ YTW + Sbjct: 190 KKLWLYRTEKPIKSYASGEWFTDSGKNQVELRAQSNQFIVCYGVHKDTKRPYTWPNASLY 249 Query: 156 RFKVEDTPLLSEEDVEYLFKFF---------QEITVPLVKDKKSIIPSKTWTNNNNRQYT 206 V D PL+S + + + + F + I + + ++ N++ + T Sbjct: 250 DCDVSDIPLISADALIDMLEVFDGMAARHGAKGIAKKQNRGAVPVGLAEANRNSHRLEDT 309 Query: 207 N--REITAFL-SCFGEEFYNG-----SHDEWIPVVMAVHHETRGSSKGKE-IARRWSKQG 257 + AF+ C +F++ + W + ++ + E +A S Sbjct: 310 TPLEDAVAFIVECAEGDFFDPPEELLGYHGWTNSIASIVNSVPHDRALAESLAHDISAAL 369 Query: 258 STYD-EENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFS 308 Y+ ++ +D++ +++ + + ++ L G + Sbjct: 370 PGYEGPDDVQKTFDSY-HDDLDHRTGTKLGASYIYRAAKSLGWNGYERFDLT 420 >gi|207270806|ref|YP_002261448.1| gp32 [Listeria phage P40] gi|204308021|gb|ACI00392.1| gp32 [Listeria phage P40] Length = 635 Score = 122 bits (306), Expect = 2e-25, Method: Composition-based stats. Identities = 85/512 (16%), Positives = 175/512 (34%), Gaps = 61/512 (11%) Query: 266 NYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFL 325 K TF E + D A + + L + + + S Y+ F Sbjct: 172 IPKVATFINEFLFDEALGDKELNKIIDQALDS--ETLGSGNLQKNMAQQIVSDYRIVRFR 229 Query: 326 YTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRF 385 + WY +D N + +L K ++ I+ F + D + E ++ ++ + Sbjct: 230 GS----LWYYED--NRFKMDDSLKKESSQILRFCYILAGD--APTHESDEIFRHVERLVE 281 Query: 386 WFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVK 445 T+ +N F DLL+ + ++ Sbjct: 282 VIPTEKVFHIRFKNGILDPARGEASGIGSFIEGGDLLEFTPYYIDVN------------- 328 Query: 446 PTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQ--- 501 + + EP D ++ E+ C+G L+ + + Sbjct: 329 -------------YYPDAEPVAMVDDYITNLTEGDEDYRKLLLECLGSTLITNPETKRAL 375 Query: 502 -RFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSR 560 + G GG GK T++ +++ G++ V + D+ + + L L G Sbjct: 376 AKLFIFIGKGGEGKGTMLTILRRILGDESVSASSIEDLTREQ---------YLYSLTGKL 426 Query: 561 IVIISETNENDEINAAK---IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVR 617 + + N IN K +K ++ D + R ++ + + + + N L Sbjct: 427 ANLCDDVE-NKPINDKKMKILKNISTCDRIELRKMREQSF-PATLTCSLILTSNHLLKSF 484 Query: 618 NPDDAWWRRYIVIP-FDKPIANRDASFAQKLETKYTLEAK-KWFLKGVKAYISKGLDVDI 675 ++W RR + +P F++ +D F K+ T LE + ++G I G + Sbjct: 485 EKGESWKRRVVWLPMFNRGF-KKDPRFITKVTTPKALEYWVRLMMEGYNRIIENG-QLTS 542 Query: 676 PEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIST 735 E K EE + + + D I + + + ++ Y+ + EQE+ K +S Sbjct: 543 SEKINKYNEEYERENNNVIEY-CDSITIDDIVGLKPKAVYDKYTTWYEQEIGEKDKALSA 601 Query: 736 RTVTLNLKQKGFIGGIKREKIEKEWKSKRIIK 767 + V + F +K ++I I+ Sbjct: 602 KIVKETVSSV-FDVEVKPQRIHGTTVKAYSIR 632 >gi|291569389|dbj|BAI91661.1| hypothetical protein [Arthrospira platensis NIES-39] Length = 908 Score = 121 bits (304), Expect = 4e-25, Method: Composition-based stats. Identities = 91/770 (11%), Positives = 201/770 (26%), Gaps = 132/770 (17%) Query: 18 FKLIPLRLGDKRPQRLGKWE-----EQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDS 72 + L P+ G+K P R W+ + + ++I K A G+G G + A D D Sbjct: 24 WVLTPVN-GEKAPYRT-GWQKESAISRDVLVDEISKGRAKGYGLRTGKVSGGIVAIDADG 81 Query: 73 KDEKTANTFKDTFEILHGTPIV---RIGQKPKILIPFRMNKEGIKKKKTTESTQGH---- 125 + + E L G P G++ + + + K T + GH Sbjct: 82 ------HKAHELAESLGGLPPTVSFTSGKEGRAQYLYLIPDTYWDKITTKKLPTGHKSSD 135 Query: 126 -----LDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEI 180 L++ G V EY W P+ + PL + + K + Sbjct: 136 GKEELLELRWDGCQSVLPPSKHPETGEYKWLKSPNEIDIAQAPL---WVINKMLKETPQP 192 Query: 181 TVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNG-SHDEWIPVVMAVHHE 239 +V + + + ++ T + + N W+ + Sbjct: 193 MPLVVLPESIPLEACLTKDDRQLLKTGASQGSRNDSAAKLARNLIGTHNWLHS-----NG 247 Query: 240 TRGSSKGKEIARRWSKQG-STYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLI 298 R + + + W + + T + T+ + + Sbjct: 248 ERCQDDPHILFNNYCDRCNPPLPPRERGAIWKSAEKSNPTPTLSEDY-LTNCVKSYRRQP 306 Query: 299 PKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNF 358 DA N + + KD + + Sbjct: 307 THTPTHWTEKDAINTVVKCDLQ-------------ILKDIEKIKRAFGERIRYNTRFKVI 353 Query: 359 LVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSIT 418 + + D E + + +V +++ LE Sbjct: 354 EIDGEPINPDAPEIDLAKKGGVEIKGSLRIKNQIILDVAQSNSFDPFEDYLEDCHKKWDG 413 Query: 419 SDLLD-SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF 477 + ++ ++ R+ G + + GT +P +F L+ Sbjct: 414 QNRINGAAKRYFGTDN-----------PLHQRYLECLLVGTVARTKKPGCKFDTLL---- 458 Query: 478 ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537 + G G GKST + G+ + + Sbjct: 459 ---------------------------ILHGQQGIGKST---WFRTMVGDDFFCDDMGDF 488 Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597 ++ + ++ N + KIK R Y Sbjct: 489 KEKDERLKMHQS---------VWTEWAEVENNISRSTSGKIKAFITTQTDNIRPPYAQRS 539 Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKK 657 + P + N+ F + A RR++VIP + I + + + Sbjct: 540 TAYPRANVLVGSTNRTDFNHDETGA--RRFMVIPVSQVIP---TNLVED----ERDQLWG 590 Query: 658 WFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTY------QAWIDDCCD--IGENLWE 709 ++ +G + EE+Q + +++ + + + + Sbjct: 591 EVVE----LYRQGRCFYL-------TREEQQQANLLNKEFTEHSYLHELIEQFVTDKDTV 639 Query: 710 ESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKE 759 + + + +++ + R + + GF K Sbjct: 640 TTEEIKDYLGKLDGEKIKTNEFNRIEREIRKVMTNLGFSQKRFNRNGTKR 689 >gi|254431281|ref|ZP_05044984.1| Primase C terminal 2 family [Cyanobium sp. PCC 7001] gi|197625734|gb|EDY38293.1| Primase C terminal 2 family [Cyanobium sp. PCC 7001] Length = 901 Score = 121 bits (304), Expect = 4e-25, Method: Composition-based stats. Identities = 48/282 (17%), Positives = 82/282 (29%), Gaps = 32/282 (11%) Query: 40 LLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKD--EKTANTFKDTFEILHGTPIVRIG 97 + ++D +P +G G + D+D++ E T E L T G Sbjct: 58 PQEAAELDLMPPA-WGLKSGPAS-GVVVLDLDAEGWRESFQAVTGHTVEDLPATLSWTSG 115 Query: 98 QKPKILIPFRMNKEGIKKKKTTE-----STQGHLDILGCGQYFVAYNIHPKTKKEYTWTT 152 + + F + E + + ++ V HP+T + Y W Sbjct: 116 KPGRSGRAFTVPPEWWPALRNRRPWSNDDGETLWELRWDRHQAVIIGTHPETGR-YRWRP 174 Query: 153 PPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITA 212 V + + +E L T P+ Sbjct: 175 GGDPKDVG-LAVAPDWLLEPLAVQELPDTEPITPTA----------------EDTERAVQ 217 Query: 213 FLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTF 272 L+ + S+ +W+ MA+H + WS+Q +DE KW + Sbjct: 218 MLAHIDP-AAHTSYGDWLRAGMALH---DTDPDLLSVWVEWSRQMPNFDEAECLEKWSSL 273 Query: 273 DFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKA 314 G +A R T L G P+ AS K Sbjct: 274 GKGHRGRSATIR-TLHYLAKAGGYREPRRCKASSPRAGAAKT 314 >gi|186687026|ref|YP_001870415.1| hypothetical protein Npun_DF027 [Nostoc punctiforme PCC 73102] gi|186469650|gb|ACC85447.1| conserved hypothetical protein [Nostoc punctiforme PCC 73102] Length = 1002 Score = 121 bits (303), Expect = 5e-25, Method: Composition-based stats. Identities = 72/571 (12%), Positives = 155/571 (27%), Gaps = 85/571 (14%) Query: 260 YDEENFNYKWDTFDFEEIGDTAKK--RSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFS 317 Y + + E ++ + + A+ + F Sbjct: 298 YKSSDIKEILGQMETPEFIRRLEQEIHAAVAKREQLAEVNVIDSDDDQNPVVAFTQQAFQ 357 Query: 318 IYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNN 377 A K +Y + K + ++ ++D N Sbjct: 358 ALYGDKNWICAADKLYYH---------TGNHYKHSPDSTE-----RKRIYDFCNSFVVEN 403 Query: 378 KNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILD 437 + K + + ++ +E ++ I + + +GI+ Sbjct: 404 EQGKKTCPYASPSSVKKVLE----WAKMGTEIDPELI----------NPPGVNCTNGIVK 449 Query: 438 LE------TGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVG 491 +E T + T E Y + L++ + + F R + Sbjct: 450 VEWEGRNFTVRLAPHTPEDYYIYEPLIEYNPNADDTYCEQLLA--CLDKPQQEIFLRNIA 507 Query: 492 MALLGGN------KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545 +L + + + G+G +GK L + +G + + + Sbjct: 508 ASLDLQTVRKFRGREVKAMFAIGLGSNGKDALRECVSTIYGKNGLTSVSL----GDFQSY 563 Query: 546 AGKANPSLIRLMGSRIVIISETNENDEINA-AKIKQMTGGDCMTARLNYGNTYSESPASF 604 L L+ SR+ SE + I+ +K GD + G + E ++ Sbjct: 564 DEGRKFGLAPLIYSRVNWASENPQTSRIDRLQSLKLFVTGDTLHCEHK-GKDHIEFSSNA 622 Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR-----------DASFAQK---LETK 650 N+ + A R ++ F K + D F + TK Sbjct: 623 IGIFNLNETPAFQGVIQAIKDRIAILEFKKTFVDNPSPNNLNEIKGDPRFRYDQDFIRTK 682 Query: 651 YTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD----CCDIGE- 705 LK + I G+D E A ++ + +I+D + GE Sbjct: 683 LAPAFLNRILKALNNLIESGIDY---ECTTDAFRNLQRENNHLFDFIEDEKLGYVEGGEM 739 Query: 706 ---NLWEESHSLA----------KSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIK 752 LW + + + +Q D+ + + Q Sbjct: 740 SASALWMLLENWYIQNGTLTIDENNRRTWIDQVRPSDKNVKGINQIIARIAQLFPKAVRA 799 Query: 753 REKIEKEWKSKRIIKGLKLKPAFESVDDNSN 783 + K I+KG+ + + +N+ Sbjct: 800 TRYCDIRKKQIPILKGIGIIENTRPIIENTR 830 >gi|150396564|ref|YP_001327031.1| hypothetical protein Smed_1346 [Sinorhizobium medicae WSM419] gi|150028079|gb|ABR60196.1| hypothetical protein Smed_1346 [Sinorhizobium medicae WSM419] Length = 793 Score = 121 bits (302), Expect = 6e-25, Method: Composition-based stats. Identities = 45/217 (20%), Positives = 76/217 (35%), Gaps = 19/217 (8%) Query: 7 KEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKL-----PACGFGFVCGVG 61 + + I NG++ +P + K P W ++ID G + G Sbjct: 13 ADVRRALIENGYRYVPAK--GKGPIIKD-WPNFSQRPDQIDGYLRKHADHRNTGVLTG-- 67 Query: 62 EQPLYAFDIDSKDEKTANTFKDTFEILHGT--PIVRIGQKPKILIPFRMNKEGIKKKKT- 118 + A D+D+ D A+ + G R+G+ PK L F+ + K Sbjct: 68 --DIVAVDVDAPDAAIADQLIARLMAIPGAKRAPYRVGKAPKCLFIFKATEPRRKASTGE 125 Query: 119 --TESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTP-PHRFKVEDTPLLSEEDVEYLFK 175 ++ ++ILG GQ FVAY H +T Y W+ P + D P ++ + V+ Sbjct: 126 YLIGGSKCQVEILGQGQQFVAYGNHAETGLPYVWSNGEPLSIPLHDLPEITPDAVDAFLA 185 Query: 176 FFQEITVPLVKD-KKSIIPSKTWTNNNNRQYTNREIT 211 I KK P + + Sbjct: 186 DADAILAKAGTPMKKKSEPRQQGRGADTFWQRVNSAA 222 >gi|284050056|ref|ZP_06380266.1| hypothetical protein AplaP_01145 [Arthrospira platensis str. Paraca] Length = 706 Score = 121 bits (302), Expect = 7e-25, Method: Composition-based stats. Identities = 91/770 (11%), Positives = 201/770 (26%), Gaps = 132/770 (17%) Query: 18 FKLIPLRLGDKRPQRLGKWE-----EQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDS 72 + L P+ G+K P R W+ + + ++I K A G+G G + A D D Sbjct: 24 WVLTPVN-GEKAPYRT-GWQKESAISRDVLVDEISKGRAKGYGLRTGKVSGGIVAIDADG 81 Query: 73 KDEKTANTFKDTFEILHGTPIV---RIGQKPKILIPFRMNKEGIKKKKTTESTQGH---- 125 + + E L G P G++ + + + K T + GH Sbjct: 82 ------HKAHELAESLGGLPPTVSFTSGKEGRAQYLYLIPDTYWDKITTKKLPTGHKSSD 135 Query: 126 -----LDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEI 180 L++ G V EY W P+ + PL + + K + Sbjct: 136 GKEELLELRWDGCQSVLPPSKHPETGEYKWLKSPNEIDIAQAPL---WVINKMLKETPQP 192 Query: 181 TVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNG-SHDEWIPVVMAVHHE 239 +V + + + ++ T + + N W+ + Sbjct: 193 MPLVVLPESIPLEACLTKDDRQLLKTGASQGSRNDSAAKLARNLIGTHNWLHS-----NG 247 Query: 240 TRGSSKGKEIARRWSKQG-STYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLI 298 R + + + W + + T + T+ + + Sbjct: 248 ERCQDDPHILFNNYCDRCNPPLPPRERGAIWKSAEKSNPTPTLSEDY-LTNCVKSYRRQP 306 Query: 299 PKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNF 358 DA N + + KD + + Sbjct: 307 THTPTHWTEKDAINTVVKCDLQ-------------ILKDIEKIKRAFGERIRYNTRFKVI 353 Query: 359 LVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSIT 418 + + D E + + +V +++ LE Sbjct: 354 EIDGEPINPDAPEIDLAKKGGVEIKGSLRIKNQIILDVAQSNSFDPFEDYLEDCHKKWDG 413 Query: 419 SDLLD-SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF 477 + ++ ++ R+ G + + GT +P +F L+ Sbjct: 414 QNRINGAAKRYFGTDN-----------PLHQRYLECLLVGTVARTKKPGCKFDTLL---- 458 Query: 478 ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537 + G G GKST + G+ + + Sbjct: 459 ---------------------------ILHGQQGIGKST---WFRTMVGDDFFCDDMGDF 488 Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597 ++ + ++ N + KIK R Y Sbjct: 489 KEKDERLKMHQS---------VWTEWAEVENNISRSTSGKIKAFITTQTDNIRPPYAQRS 539 Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKK 657 + P + N+ F + A RR++VIP + I + + + Sbjct: 540 TAYPRANVLVGSTNRTDFNHDETGA--RRFMVIPVSQVIP---TNLVED----ERDQLWG 590 Query: 658 WFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTY------QAWIDDCCD--IGENLWE 709 ++ +G + EE+Q + +++ + + + + Sbjct: 591 EVVE----LYRQGRCFYL-------TREEQQQANLLNKEFTEHSYLHELIEQFVTDKDTV 639 Query: 710 ESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKE 759 + + + +++ + R + + GF K Sbjct: 640 TTEEIKDYLGKLDGEKIKTNEFNRIEREIRKVMTNLGFSQKRFNRNGTKR 689 >gi|254517351|ref|ZP_05129408.1| Primase C terminal 2 family protein [gamma proteobacterium NOR5-3] gi|219674189|gb|EED30558.1| Primase C terminal 2 family protein [gamma proteobacterium NOR5-3] Length = 703 Score = 119 bits (299), Expect = 1e-24, Method: Composition-based stats. Identities = 51/273 (18%), Positives = 91/273 (33%), Gaps = 23/273 (8%) Query: 10 AKQAIHNGFKLIPLRLGDKRPQ-RLGKWEEQLLSSEKID----KLPACGFGFVCGVGEQP 64 A GF IPLR G K + W E LS EKI K P + Sbjct: 10 ALDLFRRGFTPIPLRRGTKATAVKWDPWVE-DLSEEKIRHHFNKYPNHELAVLL---NDE 65 Query: 65 LYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQG 124 L D D+ D +A + TP + + + R K Sbjct: 66 LLVLDADTPDAVSALH--QLLKSYEITPTLSVNSARGCHVYLRRASGTYAKSDAPNKDAN 123 Query: 125 H--LDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITV 182 +DI G+ A+ P T K +V D P + + ++ +++ Sbjct: 124 PAAIDIK-TGRAITAFP--PSTGKSIDVD---EIERVSDLPEVDQVFIDAVYRHNGRDAP 177 Query: 183 PLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRG 242 + + +++ ++ I L+ + + +W+ + +A++ E G Sbjct: 178 RPLSKQTPPATVLVPLSSSELEHKRTRIAELLAHIDP---DTGYHDWLRIGIAIYVELEG 234 Query: 243 SSKGKEIARRWSKQGSTY-DEENFNYKWDTFDF 274 + G ++ WS +G+ Y KW F Sbjct: 235 APVGFQLFDEWSAKGTKYPGTAALQDKWGKFGR 267 >gi|186686657|ref|YP_001869852.1| helicase superfamily 3 [Nostoc punctiforme PCC 73102] gi|186469691|gb|ACC85487.1| Helicase superfamily 3 [Nostoc punctiforme PCC 73102] Length = 1019 Score = 119 bits (299), Expect = 1e-24, Method: Composition-based stats. Identities = 68/488 (13%), Positives = 147/488 (30%), Gaps = 67/488 (13%) Query: 350 KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRF------WFNTDYRRQNVEENSKAK 403 K +++ + + + + +++ R + + + + + Sbjct: 366 KTLYGDKSWICAADRLYWHTGNHYKHSPDDTERRRITNFCNSFAVENEQGKKSYPYASPS 425 Query: 404 STAQSLE-AGSIFSITSDLLDSSSRFLGEQDGIL------DLETGQKVKPTKELYITKST 456 S + LE A I ++LL + + +GI+ + + T E Y Sbjct: 426 SVKKVLEWAKMRTGIEAELL--NPPGINCTNGIVRPVLIGNKVIPRLDPHTPEDYFIYEP 483 Query: 457 GTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGN------KAQRFIHIRGVG 510 + + + L+ + R + ++ + + I G+G Sbjct: 484 LIEYNPNADTTDCDRLLE--CLDRPQQEILLRNLAASIDLKTVRKLRGREVKAILAVGLG 541 Query: 511 GSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN 570 +GK L + +G + + +D +L LM SR+ SE + Sbjct: 542 SNGKDALRECVSIIYGENGLTSVSLADF----QLYDEGRKFNLAPLMHSRVNWASENPQT 597 Query: 571 DEIN-AAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIV 629 I+ +K G+ + G + E N+ ++ A R V Sbjct: 598 SRIDKIQSLKLFVTGNKLHCERK-GKDHIEFTPEAIGIFNLNETPSLQGVMKAIQDRIAV 656 Query: 630 IPFDKPIANR-----------DASFAQKLE---TKYTLEAKKWFLKGVKAYISKGLDVDI 675 + F K D FA E TK L+ + I +G+D Sbjct: 657 LEFKKTFEKNPDPNNPNELLADPRFAYDKEFIRTKVAPAFLNKMLQALNDLIEEGIDY-- 714 Query: 676 PEVCLKAKEEERQGTDTYQAWID--DCCDI------GENLWEESHSLAKS---------- 717 E A ++ + +I+ + C + + LW Sbjct: 715 -ECTTDAFYNLQKENNHLFDFIEAANLCYVPGKELTAKELWVRLEHYYTQTGTLTIDSDN 773 Query: 718 -YSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKI-EKEWKSKRIIKGLKLKPAF 775 + EQ D+ V + Q F +K + + ++ ++KG+ + Sbjct: 774 NRRTWSEQVRPSDKNVKGINQVIARIAQL-FPKAVKGTRYCDIAKRNIPVLKGIGILEVT 832 Query: 776 ESVDDNSN 783 + D + Sbjct: 833 RTTLDETR 840 >gi|5420103|emb|CAB46558.1| putative DNA primase [Streptococcus thermophilus] Length = 556 Score = 118 bits (296), Expect = 3e-24, Method: Composition-based stats. Identities = 52/349 (14%), Positives = 109/349 (31%), Gaps = 27/349 (7%) Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDL-----VSGYF 477 D ++ + + ETG+ + + +T+ + + G F Sbjct: 184 DKQENYVVVGGELYNNETGEFTQFDPRIIVTRKVRMGYNPDATEPIIDGWKPTVWLKGLF 243 Query: 478 -ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEAS 536 + D + + + G + G GG+GK T L++ G++ V + Sbjct: 244 NGDRDSYDLAIQIIRATITGKTLENI-FWLYGEGGTGKGTFQTLLENLVGSENVAS---- 298 Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI-NAAKIKQMTGGDCMTARLNYGN 595 + L+G +VI + ++ I + + + + GD + Sbjct: 299 -----FKIDGASGKFDTSILIGKTVVIGDDIQKDVVIKDTSVVFSLATGDPIRIEDKGKR 353 Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLE-TKYTLE 654 Y+ T N + A RR+ V+ F + D K LE Sbjct: 354 PYTTRK-RMTVVQSSNGFPRMNADQKAINRRFRVLTFSELKGKADKRIKNDYVGRKEVLE 412 Query: 655 AKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCC--DIGENLWEESH 712 VK I P+ ++ +E + + ++D ++ + + + Sbjct: 413 YF------VKLAIETPFRDVNPQKSIEFLDEAYKEMNPVADFVDRFFNDEVIKCNYVPNG 466 Query: 713 SLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWK 761 + + + Y E+ N + S K K I+K K Sbjct: 467 YVFECFKAYCEKNQNRNYFLNSRTLHKQIKKILPKTFRPKEVTIKKGQK 515 >gi|300941010|ref|ZP_07155532.1| toprim domain protein [Escherichia coli MS 21-1] gi|300454249|gb|EFK17742.1| toprim domain protein [Escherichia coli MS 21-1] Length = 500 Score = 118 bits (295), Expect = 4e-24, Method: Composition-based stats. Identities = 39/209 (18%), Positives = 68/209 (32%), Gaps = 19/209 (9%) Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478 R +G ++G+LD + G + ++ F + F + Sbjct: 299 RRLIGFRNGVLDTQNGTFHPHSPSHWMRTLCDVDFTPPVEGETLETHAPAFWRWLDRAAG 358 Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537 E D + M L Q F+ + G GGSGKS + + G +A Sbjct: 359 GRAEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSIMAEIATLLAGEDNATSATIET 418 Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597 + R L G ++ + + + A +K +TGGD ++ Y + Y Sbjct: 419 LESPR---------ERAALTGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYRDAY 468 Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRR 626 S V N + + RR Sbjct: 469 STHIP-AVILAVNNNPMRFTDRSGGVSRR 496 >gi|158522714|ref|YP_001530584.1| bifunctional DNA primase/polymerase [Desulfococcus oleovorans Hxd3] gi|158511540|gb|ABW68507.1| Bifunctional DNA primase/polymerase [Desulfococcus oleovorans Hxd3] Length = 746 Score = 118 bits (294), Expect = 5e-24, Method: Composition-based stats. Identities = 89/707 (12%), Positives = 194/707 (27%), Gaps = 125/707 (17%) Query: 5 QWKEQAKQAIHNGFKLIPL----------------RLGDKRPQR-----LGKWEEQLLSS 43 +W+ KQ G+ + PL G K P ++ S Sbjct: 6 KWQ-AVKQYYKKGWPIFPLHTIKDGKCSCDKPTCTTPG-KHPMYDAEDLTEGFKNASSSQ 63 Query: 44 EKIDKL----PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQK 99 +++ K P G G A DID D + + + Sbjct: 64 QQLKKWWSRWPDANIGIRTGKES--FIAIDIDLPDGPDNMKKLEKTYGNLPKTVNQKTGG 121 Query: 100 PKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKV 159 + F+ + G++DI G G Y VA K+Y W P ++ Sbjct: 122 GGYQLFFKPPHT---RIPCKTGLLGNIDIRGEGGYVVAPPSDHIKNKKYKWRHSPDSIEI 178 Query: 160 EDTPLLSEEDVEYLFKF--FQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCF 217 P + +E K+ + + K++ ++ + EI L Sbjct: 179 AGMPEWLTDLIEKGEKYCDLVHSLKKIPEGKRNDTLAEIAGSLRGEGRELDEIHGVLRKA 238 Query: 218 GEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEI 277 + + ++ + K+IA S T D + Sbjct: 239 NKNRCTPALED---------------DEVKKIAESISSYPPNAS---------TSDNKNK 274 Query: 278 GDTAKKRSTFTSLFYHHGK---LIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWY 334 + + F F+ + G + + + + + Sbjct: 275 NAKTAQFNKFIETFFEKNEILQDTNSGFFYAIINGEGGEQVLDTRSDNFKRHC------- 327 Query: 335 KKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQ 394 ++ K + ++++ ++D+ + + E N + Sbjct: 328 ----------RSSIRKSSDALIS-----RQDIDLIIDHLEANAVDQNKKGEVSI------ 366 Query: 395 NVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITK 454 + + E + ITS+ G + + + Sbjct: 367 RIARVDNTIYLDLADEKKQVVKITSE-------------GWTICQETPVHFYRPQGMLPL 413 Query: 455 STGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGK 514 + FL + + + AL + + G GS K Sbjct: 414 PVPVEGKGFAKLKHFLPAGKQH---KHTCRLILAWLVGALNPQG-PYVALILTGPKGSSK 469 Query: 515 STLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEIN 574 STL +K+ + +G +I + +V + + Sbjct: 470 STLTEFLKFLI-DPAKATT---------RALSGNEETLMIYCKNNWLVSFDNLSVLSQPM 519 Query: 575 AAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK 634 + + +++ G ++ R Y + + P I+ + F++ D R ++I + Sbjct: 520 SDALCRVSTGGGLSKRKQYTDDEEYVFQANRPIIMNGINNFIKADD--LVDRSLII--EL 575 Query: 635 PIANRDASFAQK----LETKYTLEAKKWFLKGV-KAYISKGLDVDIP 676 P + +K + LK V A ++ + +D+P Sbjct: 576 PFIDDAKRLTKKRLNQEFQEAQPLILGSLLKAVSSALKNENIKIDVP 622 >gi|315122493|ref|YP_004062982.1| P4 family phage/plasmid primase [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495895|gb|ADR52494.1| P4 family phage/plasmid primase [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 120 Score = 118 bits (294), Expect = 5e-24, Method: Composition-based stats. Identities = 98/118 (83%), Positives = 108/118 (91%), Gaps = 2/118 (1%) Query: 587 MTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQK 646 MTAR NYGNTYSE+ ASFTPFIV NKHLFVRN DDAWWRRYIVIPFDKPIANRDA+FAQK Sbjct: 1 MTARFNYGNTYSEARASFTPFIVSNKHLFVRNLDDAWWRRYIVIPFDKPIANRDATFAQK 60 Query: 647 LETKYTLEAKKWFLKGVKAYISKG--LDVDIPEVCLKAKEEERQGTDTYQAWIDDCCD 702 LET+Y LEAKKWFL+G+KAYI G LD+D+PEVC+ AKEEER+GTDTYQAWIDDCC+ Sbjct: 61 LETEYALEAKKWFLEGIKAYIRNGRNLDIDVPEVCINAKEEERRGTDTYQAWIDDCCE 118 >gi|62362410|ref|YP_224275.1| hypothetical protein LPPPVgp44 [Listonella phage phiHSIC] gi|58220032|gb|AAW67544.1| putative phage protein [Listonella phage phiHSIC] Length = 815 Score = 117 bits (293), Expect = 7e-24, Method: Composition-based stats. Identities = 91/686 (13%), Positives = 183/686 (26%), Gaps = 92/686 (13%) Query: 12 QAIHNGFKLIPLRLGDK----------------RPQRLGKWEEQLLSSEKI----DKLPA 51 I GF ++ L K + +L W+ + + +++ D P Sbjct: 5 DYIDAGFSIVELHPMTKEKHCTCFKGKECAMAGKHPKLQNWQSKQYTEDELVAIEDSSPD 64 Query: 52 CGFGFVCGVGEQPLYAFDIDSKDEKTA---NTFKDTFEILHGTPIVRIGQKPKILIPFRM 108 G DID +++ KDT + + Sbjct: 65 S-----FGALVGGYLVIDIDPRNDGDNSYEQLCKDTNTDYEKESSFVVFTGGGGKHIYFK 119 Query: 109 NKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEE 168 EG++ K +D G + V K+ Y + + P E Sbjct: 120 APEGVQLKSKLGQY-NGVDFKSSG-FVVGAGSLHKSGLLYESIKG-APSDISEPPKKLVE 176 Query: 169 DVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDE 228 +E K + P + + + ++I L C + +++ Sbjct: 177 LLE-----------------KKVNPKNSAFSLPEDKVDQQKIQDMLDCIDP---DCDYED 216 Query: 229 WIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFT 288 W+ + MA+H ET G +G ++ WS GS Y+++ ++KW +F + T Sbjct: 217 WLHIGMAIHDETCG--EGFDLWDAWSSNGSKYNQKEMDFKWHSFG------KSPNPVTIG 268 Query: 289 SLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTL 348 +L + + NK + + + + + Sbjct: 269 TLIRIAEDNGYSEPV----TFESNKPTVVDWDDNDPRIEKAIELAMINEAAERAQYHDAM 324 Query: 349 D------KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKA 402 + + + I+ + + KED ++ + D+ + K Sbjct: 325 NDLDFGIEESKEIVAQIKADKEDDDTTLDDKPKFDLTKPPGLVGEIADWINRRGHAPRKM 384 Query: 403 KSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVE 462 + A +L+A S + S+ + + G KE Sbjct: 385 LAIAAALQAVSNSCGIYWRMSSNGFNDLCPNLYMVCIAGSGT--GKESIQNNQMAIQREL 442 Query: 463 GEPSQEFLDLVSGYFESEEVMDYFTR--CVGMALLGGNKAQRFIHIRGVGGSGKSTLMNL 520 G F +E+ R + A + G G + + + Sbjct: 443 GLGGSMF----GKIKSDKEMYTNLLRSQVNSYVI--DEFASIMQKVFGGGKNTAAYNAGI 496 Query: 521 IKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQ 580 + L L + NE E + K KQ Sbjct: 497 ESVLLQLFSKSGGRIEFGGDEADAIKSQLRGELAALEKK-----KDENEFTEYDEKKEKQ 551 Query: 581 MTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD 640 + + + TP + R +VI + Sbjct: 552 ILRLYENAYDGFLDDPFVSLTGYSTPTEFFKYINRSMVDSGFFARMTVVIE-----PENN 606 Query: 641 ASFA---QKLETKYTLEAKKWFLKGV 663 +K+ K E+ K+ L Sbjct: 607 PGPMPASEKILDKEIPESIKYKLLAA 632 >gi|315634869|ref|ZP_07890151.1| bacteriophage P4 DNA primase [Aggregatibacter segnis ATCC 33393] gi|315476421|gb|EFU67171.1| bacteriophage P4 DNA primase [Aggregatibacter segnis ATCC 33393] Length = 348 Score = 117 bits (293), Expect = 7e-24, Method: Composition-based stats. Identities = 54/363 (14%), Positives = 111/363 (30%), Gaps = 33/363 (9%) Query: 441 GQKVKPTKELYITKSTGTPFVEGEPS-QEFLDLVSGYF-ESEEVMDYFTRCVGMALLGGN 498 + +E ++T + E + F + ++ E+ + L + Sbjct: 1 MEFSPHCRENWLTSFIPYDYTNQEENTPHFDNWLNFVADGKEDKKQAILGALYAILTNRH 60 Query: 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMG 558 Q F + G GGSGKS + G Q D+ + R E + Sbjct: 61 NWQLFFEVTGDGGSGKSVFAQIATMLAGEQNTERGRLVDLDEPRGRE---------NFVN 111 Query: 559 SRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRN 618 +++ E + + +K ++ GD + + + + IV N+ Sbjct: 112 KTLILCLEQSRYGG-DGGGLKSISAGDLVNIDPKHKSKFKADIP-AIVLIVNNEPTRFTE 169 Query: 619 PDDAWWRRYIVIPFDKPIAN--RDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIP 676 + RR ++ FDK + RD K+E ++ K + + Sbjct: 170 RNGGIERRRVIFHFDKVVPESKRDPHLMDKIE-AEAGGIIYKLIQAFKNPLDAKKALTKQ 228 Query: 677 EVCLKAKEEERQGTDTYQAWIDDCCDIGE-------NLWE--ESHSLAKSYSEYREQELN 727 + +A E + +D + E N L +Y + E Sbjct: 229 KESAEALEI-KMNSDHLTVFCSYFLTSQESNGLGIGNAKTGLPRTHLYPAYLVFIEAN-- 285 Query: 728 YDRKRISTRTVTLNLK----QKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDNSN 783 + ++ T +L+ Q R +I + R I + K F+ + Sbjct: 286 NIQNALTLNNFTESLRQGLAQHKNKYPYTRRRITSGAEKGRYITNVHFK-NFDEFYNEYI 344 Query: 784 IID 786 + Sbjct: 345 KSN 347 >gi|254361629|ref|ZP_04977767.1| bacteriophage protein [Mannheimia haemolytica PHL213] gi|153093147|gb|EDN74163.1| bacteriophage protein [Mannheimia haemolytica PHL213] Length = 622 Score = 115 bits (288), Expect = 2e-23, Method: Composition-based stats. Identities = 49/344 (14%), Positives = 108/344 (31%), Gaps = 34/344 (9%) Query: 438 LETGQKVKPTKELYITKSTGTPFVEG-EPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALL 495 + ++ ++T + E + F ++ ++ + L Sbjct: 278 YSVNVQRTVNRQNWLTAYIPHSYDENVAETPHFDQWLNFVSDGKQDKAKNILAALYAILT 337 Query: 496 GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIR 555 Q F + G GGSGKS + G + +A + R + Sbjct: 338 NRYNWQVFFQVTGKGGSGKSVFAGIATLLAGEKNTASARLENFDDERK---------IAG 388 Query: 556 LMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLF 615 L +++I SE + + +K +TGGD + + + + + IV N Sbjct: 389 LEDKKLIICSEQTKYAG-DGGGLKAITGGDMVRVDPKNKHPF-NARIAAMIMIVNNDPCK 446 Query: 616 VRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDV 673 + RR + F+K RD F K+ + L + + Sbjct: 447 WTERNGGIDRRIVNFRFNKRPPENERDPYFMDKITL-EIGGIIRKVLDTFPDPLEAKRAL 505 Query: 674 DIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEES-------------HSLAKSYSE 720 + + L+A E ++ +D + + EN L +Y Sbjct: 506 EEQKESLEALEI-KKQSDPLTDFF-EYLYTTENTDGLYIGTGNTLGHDKIRTHLYPAYLA 563 Query: 721 YREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKR 764 + + + + + T + ++Q G K + +++ + Sbjct: 564 FVKAKNVLE---LGLNTFVVGIEQAVKQHGNKHDFTKRKTNKGQ 604 >gi|211956363|ref|YP_002302432.1| NTPase [Deerpox virus W-1170-84] gi|115503158|gb|ABI99076.1| NTPase [Deerpox virus W-1170-84] Length = 786 Score = 115 bits (288), Expect = 3e-23, Method: Composition-based stats. Identities = 66/372 (17%), Positives = 127/372 (34%), Gaps = 53/372 (14%) Query: 351 ITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR-----QNVEENSKAKST 405 I S + L + + ++ + N++ S + N + +V K K Sbjct: 333 IMDSNVIHLTDRGDHIVWINNSWKFNSEESLITKLILNMKDQLPMEYGHDVLCPRKRKVI 392 Query: 406 AQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKV--KPTKELYITKSTGTPFVEG 463 +L + +I + D+ L ++GILD+ TG+ +K+ T STG Sbjct: 393 ESNLRDMLVDNIET---DTYPCMLPFKNGILDISTGKFYTGPESKKFVCTVSTGFNLDVN 449 Query: 464 -------EPSQEFLDLVSGYFE----SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGS 512 + +E +++ +++ + + R + L G K G + Sbjct: 450 IFSDENSKEMKELEKILNDIQPLTEENKKNRELYERTLASCLCGSTKQ-CLTFFFGETAT 508 Query: 513 GKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE--- 569 GKST L++ A G+ ++ + NP + + R V SE + Sbjct: 509 GKSTTKRLLQSAIGDLFIETGQTILTD----VMDKGPNPFIANMHLKRSVFCSELPDFAC 564 Query: 570 --NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627 + +I A IK++T C+ R + N + + I N D+A RR Sbjct: 565 SGSKKIRADNIKKLT-EPCIVGRPCFSNRINN-KNHASIIIDTNYKPIFDKVDNALMRRI 622 Query: 628 IVIPFDKPIANR------------------DASFAQKLETK-YTLEAKKWFLKGVKAY-I 667 +I F + D + K++ Y + +K + Y I Sbjct: 623 SLIRFRTHFTQKNGFETARNNSAYSDIKQLDENLDIKIQKNYYRYQFLNLLVKWYQKYHI 682 Query: 668 SKGLDVDIPEVC 679 P+ Sbjct: 683 PTMRLFPTPDAV 694 >gi|62637469|ref|YP_227467.1| NTPase (DNA replication) [Deerpox virus W-848-83] gi|115503329|gb|ABI99247.1| NTPase [Deerpox virus W-848-83] Length = 786 Score = 115 bits (288), Expect = 3e-23, Method: Composition-based stats. Identities = 66/372 (17%), Positives = 127/372 (34%), Gaps = 53/372 (14%) Query: 351 ITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR-----QNVEENSKAKST 405 I S + L + + ++ + N++ S + N + +V K K Sbjct: 333 IMDSNVIHLTDRGDHIVWINNSWKFNSEESLITKLILNMKDQLPMEYGHDVLCPRKRKVI 392 Query: 406 AQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKV--KPTKELYITKSTGTPFVEG 463 +L + +I + D+ L ++GILD+ TG+ +K+ T STG Sbjct: 393 ESNLRDMLVDNIET---DTYPCMLPFKNGILDISTGKFYTGPESKKFVCTVSTGFNLDVN 449 Query: 464 -------EPSQEFLDLVSGYFE----SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGS 512 + +E +++ +++ + + R + L G K G + Sbjct: 450 IFSDENSKEMKELEKILNDIQPLTEENKKNRELYERTLASCLCGSTKQ-CLTFFFGETAT 508 Query: 513 GKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE--- 569 GKST L++ A G+ ++ + NP + + R V SE + Sbjct: 509 GKSTTKRLLQSAIGDLFIETGQTILTD----VMDKGPNPFIANMHLKRSVFCSELPDFAC 564 Query: 570 --NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627 + +I A IK++T C+ R + N + + I N D+A RR Sbjct: 565 SGSKKIRADNIKKLT-EPCIVGRPCFSNRINN-KNHASIIIDTNYKPIFDKVDNALMRRI 622 Query: 628 IVIPFDKPIANR------------------DASFAQKLETK-YTLEAKKWFLKGVKAY-I 667 +I F + D + K++ Y + +K + Y I Sbjct: 623 SLIRFRTHFTQKNGFETARNNSAYSDIKQLDENLDIKIQKNYYRYQFLNLLVKWYQKYHI 682 Query: 668 SKGLDVDIPEVC 679 P+ Sbjct: 683 PTMRLFPTPDAV 694 >gi|147678840|ref|YP_001213055.1| hypothetical protein PTH_2505 [Pelotomaculum thermopropionicum SI] gi|146274937|dbj|BAF60686.1| hypothetical membrane protein [Pelotomaculum thermopropionicum SI] Length = 433 Score = 115 bits (287), Expect = 3e-23, Method: Composition-based stats. Identities = 33/196 (16%), Positives = 56/196 (28%), Gaps = 31/196 (15%) Query: 8 EQAKQAIHNGFKLIPL----------------RLGDKRP--QRLGKWEEQLLSSEKI--- 46 + A + G+ +IPL + G K P G+++ + S ++I Sbjct: 3 DVALFYLALGWSVIPLHSAQGGRCTCGRSGCDKPG-KHPILPAWGEYQTRRASEDEIHDW 61 Query: 47 -DKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIP 105 + P G V G L D+D + G P K Sbjct: 62 FARWPDANLGVVTGQVS-GLVVVDLDGPAA------VEAVRDRGGLPPTPTVITGKGYHY 114 Query: 106 FRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLL 165 + ++ K LD+ G Y VA + + Y W + P Sbjct: 115 YLVHPGQPTKNAAALGGIKGLDVRADGGYVVAPPSVHSSGRVYRWAKGRSPDDLPLAPC- 173 Query: 166 SEEDVEYLFKFFQEIT 181 +E L + Sbjct: 174 PAWFLEMLANRGRAQA 189 >gi|39937604|ref|NP_949880.1| hypothetical protein RPA4546 [Rhodopseudomonas palustris CGA009] gi|39651463|emb|CAE29986.1| conserved hypothetical protein [Rhodopseudomonas palustris CGA009] Length = 770 Score = 114 bits (284), Expect = 7e-23, Method: Composition-based stats. Identities = 47/249 (18%), Positives = 82/249 (32%), Gaps = 16/249 (6%) Query: 36 WEEQL-LSSEKIDKLP--ACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTP 92 W Q + + G G + G L A D D+ D+ A G+ Sbjct: 64 WLNQPDPDEHDLARWQRMGAGVGIMTGGPLN-LIAVDADTLDQACAGKVMIAGMKHFGST 122 Query: 93 IVRIGQKPKILIPFRMNKEG------IKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKK 146 VRIG+ PK + R+ + +++L G+ FVA+ IHP TKK Sbjct: 123 PVRIGRAPKAVYLIRVTEPIQYCRVEFGPLNDEGRRVDRVELLSDGRQFVAHGIHPVTKK 182 Query: 147 EYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYT 206 Y WTTP V+ P+++ + + ++I + + + R Sbjct: 183 PYVWTTPL--CHVDKLPVVTPQQLAAFMDELRQILPNTGPLVTEGA-TTEVSQASLRGDI 239 Query: 207 NREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSS-KGKEIARRWSKQGST--YDEE 263 + A + G+ + + A+ + EI W + D + Sbjct: 240 EKVRAAVAATPNTSAAFGTREAYRDFGYAIKAALPDDEPEAFEIFADWCARWEDGENDPD 299 Query: 264 NFNYKWDTF 272 W Sbjct: 300 IVAADWRRM 308 >gi|254453953|ref|ZP_05067390.1| Bifunctional DNA primase/polymerase, N-terminal domain family [Octadecabacter antarcticus 238] gi|198268359|gb|EDY92629.1| Bifunctional DNA primase/polymerase, N-terminal domain family [Octadecabacter antarcticus 238] Length = 516 Score = 114 bits (284), Expect = 7e-23, Method: Composition-based stats. Identities = 65/524 (12%), Positives = 130/524 (24%), Gaps = 99/524 (18%) Query: 27 DKRPQRLGKWEEQLLSSEKIDKL----PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFK 82 K+P ++ +++ K P G C + D D+ A + Sbjct: 44 QKKPITANGHKDATNDLDQVKKWWTETPTANIGLAC--AASGIVVVDPDTYKPTFAWD-Q 100 Query: 83 DTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHP 142 E + + + + K S +D+ G Y + Sbjct: 101 FRVEKGIDVIKTLTQRSARGGWHYIFAAQADTKYPG--SLAVEVDVKHKG-YIMLAPSK- 156 Query: 143 KTKKEYTWTTPPHRFKVEDTPLLSEED-VEYLFKFFQEITVPLVKDKKSIIPSKTWTNNN 201 K Y W +D + + + I + + + + + Sbjct: 157 FEGKVYAWHND------DDIADAPDWIKAKAPVRNVATIAPQVDELTIADVSGPMFVEQA 210 Query: 202 NRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYD 261 I A + +W+ V M + HET G G + +WS+Q Y Sbjct: 211 RIDKALDAIPA---------AELDYGDWVKVGMGLCHETMGEESGLALWDQWSRQDPRYK 261 Query: 262 EE-NFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYK 320 + +W F + T S+F P LL Sbjct: 262 GGDDLAKRWAKFTVG-----SDNPVTMRSIFEMAKARKPDYLLPD--------------- 301 Query: 321 KGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNS 380 W ++++ L + + + PE Sbjct: 302 ------------W-----AAGWVYNKALMEFHQLATGHSIKPGAFNAKFTRMPECYAAE- 343 Query: 381 KSPRFWFNTDYRRQNVEENSKAKSTAQSLE-AGSIFSITSDLLDSSSRFLGEQDGILDLE 439 R ++ ++ A ++ I LD ++ Sbjct: 344 -----------RTASMLVLRHMRTVANTMFWPCDDRIIGHRGLD----YVNV-------- 380 Query: 440 TGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMAL-LGGN 498 + +T Q L+ + + G Sbjct: 381 ---FQRHD----VTPVAPMTLDAELAVQTILEHAYSLVADPAEAELLLTFLAYVYQNPGK 433 Query: 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542 + + I + G+ G+GKS + L+K G + + Q Sbjct: 434 RVRWAIVLFGIQGNGKSFWVELMKRLMG-HNAGEVAGTTVSQRF 476 >gi|218442838|ref|YP_002381158.1| DNA primase [Cyanothece sp. PCC 7424] gi|218175196|gb|ACK73928.1| DNA primase catalytic core domain protein [Cyanothece sp. PCC 7424] Length = 1117 Score = 113 bits (283), Expect = 1e-22, Method: Composition-based stats. Identities = 71/522 (13%), Positives = 154/522 (29%), Gaps = 83/522 (15%) Query: 306 RFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKED 365 + Y + ++++ + + K +Y W + + ++ K+ Sbjct: 479 SPNSEYTQQVYNVLYRDKRWICVEGKLYY---------WETNHYEHSKDVVE-----KKR 524 Query: 366 VFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSS 425 + D NK+ + + + N+ + + Sbjct: 525 IRDFLNTLPKKNKDGEITYPFA------KPNCVNNALEWLKMGFGIDPEL--------VN 570 Query: 426 SRFLGEQDGILDL------ETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFES 479 L +G+L + T + V E Y + P + L+S Sbjct: 571 PPGLNCTNGVLKIHWIESTPTWELVPHNPEQYYLYEPVLTYDPDAPQTDCDRLLSAL--D 628 Query: 480 EEVMDYFTRCVGMAL-LGGNKAQR-----FIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533 + F R V +L + + + + ++G+G +GK ++ +++ +G + Sbjct: 629 PAQLTIFLRSVAASLDIQTVRKYKGRLVRALLMKGLGSNGKDSIREVVRLMYGGIGMTGC 688 Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA-AKIKQMTGGDCMTARLN 592 SD Q L +L SR+ SE +I++ +K GD ++ Sbjct: 689 TLSDFRQ----YDEGRKFPLSKLGRSRVNWASENASFAKIDSLQSLKAAITGDPLSVENK 744 Query: 593 YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA----------NRDAS 642 + +E + F N + +A RY V+ F+K D Sbjct: 745 GKDE-NEYDPTAVLFFNCNDIPRLTGSMEAIASRYAVLTFNKTFTIDADPSKGEIEADPR 803 Query: 643 FAQKLE---TKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD 699 F + T L + +S G+D + A E + + D Sbjct: 804 FKYDPDFLKTHVLSAFLNRVLSELVNLMSDGIDYRACDR---AWNEIKAENSHLFQFTQD 860 Query: 700 C-CDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTL-----------------N 741 E + K + + ST + Sbjct: 861 VGLSYLEGKEMPVGDIWKLLEGWYQDNGYLSYIESSTGKLKADWTDSPIRGDRLVKGANQ 920 Query: 742 LKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDNSN 783 + + K +++ S R+I+G+ + P+ + N Sbjct: 921 VTARILELFPKAKRVVLANNS-RVIRGIGIVPSGNGDEGGHN 961 >gi|307710139|ref|ZP_07646583.1| hypothetical protein SMSK564_1413 [Streptococcus mitis SK564] gi|307619119|gb|EFN98251.1| hypothetical protein SMSK564_1413 [Streptococcus mitis SK564] Length = 513 Score = 113 bits (282), Expect = 1e-22, Method: Composition-based stats. Identities = 62/473 (13%), Positives = 143/473 (30%), Gaps = 44/473 (9%) Query: 295 GKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITAS 354 + + + D N + YK+ +Y + + +I +K+ Sbjct: 15 ADIKFETYPENAIQDFDNATPITEYKEEWRIYK------NEVIDSTPHIEPSEKEKMKKR 68 Query: 355 IMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSI 414 F + + L +++ + A+ LE Sbjct: 69 KAPFYIMADFLMAHLIVVSIAEIEDTGEGNLFVYNPKEGIYQPAWHIVNKLARRLEPSFR 128 Query: 415 FSITSDLLD------------SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVE 462 + S++ SR++ + I D G +K + + T + Sbjct: 129 SNDISEIFSVLSCICKNVSIYQGSRYIALGNCIYDTYYGDGMKYSPSIVFTHKVQVNYNS 188 Query: 463 GEPSQE-----FLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKST 516 S ++ F E++ + + + G + I + G GG+GK + Sbjct: 189 EATSPVLGDWSIDSWLTELFNNDAELIHLAWQTILAVIRGYADERI-IWLIGKGGTGKGS 247 Query: 517 LMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI-NA 575 L+ G + + ++ + +L+G +VI + + + + Sbjct: 248 FQELLINLVGRINTASMKLIELEGKN-------RFATSQLIGKHLVIGDDNPIDKVVTDP 300 Query: 576 AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP 635 + + + D +T YS + N+ + ++ +A RR ++PF Sbjct: 301 STMFSLVTHDIVTIEKKGKQAYSA-RLTPVIVQSSNRLIKIQGDKEAIARRTFILPFVSE 359 Query: 636 IANRDASFAQKLETKYTLEAKKWFLKGVKAY-ISKGLDVD--IPEVCLKAKEEERQGTDT 692 K + ++ LK Y IS G P + KE + + Sbjct: 360 FNKDGYKREIKQVYLKRQDVLEYVLKNALEYDISDGFKDISHHPAI----KEIHGKSMTS 415 Query: 693 YQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK 745 + + ++ + + + +Y ++ E KR + LK Sbjct: 416 VEQFSSYLFSRVKSTFLPNSFMLWAYEQFCEGNG---LKRETKEAFHKELKDA 465 >gi|17227468|ref|NP_478650.1| hypothetical protein all9003 [Nostoc sp. PCC 7120] gi|17134934|dbj|BAB77489.1| all9003 [Nostoc sp. PCC 7120] Length = 1097 Score = 113 bits (282), Expect = 1e-22, Method: Composition-based stats. Identities = 57/470 (12%), Positives = 126/470 (26%), Gaps = 64/470 (13%) Query: 300 KGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFL 359 L + + F+ AD K +Y W + + + Sbjct: 358 ADLGDEEPDSTFLQKGFNTLYGETKWICADGKLYY---------WHGKGYRYSPDAVERR 408 Query: 360 VSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITS 419 + + KN S + + + L + Sbjct: 409 R-----ITNYCNSYPVIKKNGDSY-----------VITYPYAKPNKVKELLEWVKLRVEI 452 Query: 420 DLLDSSSRFLGEQDGIL--DLETGQKVK----PTKELYITKSTG-TPFVEGEPSQEFLDL 472 D + + +G+L D + + + S L Sbjct: 453 DPQLLNPPGVNCTNGVLAIDWSGPIPRPVLEEHDPDKHFFTYEPLVKYDPKADSSHCDRL 512 Query: 473 VSGYFESEEVMDYFTRCVGMALL------GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFG 526 + R +G +L + + + G+G +GK ++ ++ +G Sbjct: 513 LE--CLDSPQQQILLRNLGASLDLAEVRKRKGREPKVLLACGLGANGKDSIRQVVSTIYG 570 Query: 527 NQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEIN-AAKIKQMTGGD 585 +Q + + +D + +L L+ SR+ SE + ++ +K G+ Sbjct: 571 HQGMTSCSLADFV----AYDEGRKFALAALVNSRVNWASENPQTTRLDKIQSLKLFATGN 626 Query: 586 CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI-ANRDASFA 644 + + G + E ++ N A R + F K N D + Sbjct: 627 VLHSERK-GKDHIEFNSNAIGIFNLNDTPSWYGTIQAILDRIAALIFRKTFKTNPDPNNH 685 Query: 645 QKLETKYT-------------LEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTD 691 +L + G++A I++G+D + +A EE + Sbjct: 686 DELLADPRFAYDVDFVQECVAPAFLNKMIAGLQALIAEGIDYSCTQ---QALEEIQAENS 742 Query: 692 TYQAWIDDC-CDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTL 740 + D N + + + + + S V Sbjct: 743 HLFQFCKDTGLGYKANGIVTAFDIWQRLENWYIDNGTLSFEESSNGKVKA 792 >gi|167032204|ref|YP_001667435.1| bifunctional DNA primase/polymerase [Pseudomonas putida GB-1] gi|166858692|gb|ABY97099.1| Bifunctional DNA primase/polymerase [Pseudomonas putida GB-1] Length = 920 Score = 113 bits (282), Expect = 1e-22, Method: Composition-based stats. Identities = 103/866 (11%), Positives = 222/866 (25%), Gaps = 150/866 (17%) Query: 7 KEQAKQAIHN-GFKLIPLRLGDKRP-----QRLGKWEEQLLSSEK-IDKLPACGFGFVCG 59 + A++ I L+P+ G K P + G + + S+E+ P+ G V G Sbjct: 10 ADWARRYIQTFNLALVPMDPGTKGPTQEGWNKPGGYFTDVASAEQFWVANPSHNLGVVLG 69 Query: 60 VGEQPLYAFDIDSKD---EKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMN------- 109 + + D+D + T + L + +G + I FR+ Sbjct: 70 P--SRVCSLDVDDVEFTRLVLQQTHGIDVDALAESYPTSVGNPARFRIMFRVPDGVELKR 127 Query: 110 ----------------------------------KEGIKKKKTTESTQGHLDILGCGQYF 135 + ++ ++ Sbjct: 128 HALVWPNKNDPDGIIHKGLMAQVRAAVDAKDEAREAALRMAAEPFKKLTVFELRAGLVQD 187 Query: 136 VAYNI-HPKTKKEYTWTTPPHRFKVEDTP--LLSEEDVEYLFKFFQEITVPLVKDKKSII 192 V HP T K YTW P + D P LL+ FK E P + Sbjct: 188 VLPPSIHPGTGKPYTWRKAPDANGLPDLPGELLAIWQGWEEFKPNGEALCPWRPQPAVPV 247 Query: 193 PSKTWTNNNNRQYTNREITAFLSCFG------EEFYNGSHD----EW------------- 229 + + + F + +W Sbjct: 248 SRPAVAPRPAAARSGEPLPEVIPEFNRIHDIATMIEAHGYKRVGSKWLCPQSSSGLPGVT 307 Query: 230 IPVVMAV--HHETRGSSKGK--EIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRS 285 I + HH + + G + + D+ + Sbjct: 308 ITDDKKLYSHHTSDPLANGHKNDAFDVFCILMHNGDQRAATRAAAQILGIDAKARPPTPP 367 Query: 286 TFTSL-----FYHHGKLIPKGLLASRFSDAYNKAMFSIY---------KKGHFLYTADTK 331 L + G +D + S + + Sbjct: 368 PLGELPRAPSVVEQAEQGEAGAAPDEAADVDARQGDSSTAGSSADGGQGGEGLVLKIAKR 427 Query: 332 AWYKKDK--NNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNT 389 + + N + K + + + + +++ +++ K Sbjct: 428 RFALVEGTTNVWDMDKGQSMKRSGFEALVGKPLAKQWMESADKKLVSSEQVKELEQARKM 487 Query: 390 DYRR------QNVEENSKAKSTAQ-----SLEAGSIFSITSDLLDSSSRFLGEQDG-ILD 437 ++ ++ T + S+ L D+ +L ++D Sbjct: 488 SSKKGGALNLTPLDRYVYIDGTKEAWDREKKRRLPEGSVKMALGDAYQLWLNSPSRRVVD 547 Query: 438 LETGQKVKPTKELYITKSTGTPFVE-----GEPSQEFLDLVSGYFESEEVM--DYFTRCV 490 ++ + + + + E L + + + + + D+ + + Sbjct: 548 VDHIVFDPTMTKDPAIYINTFEGLPLGPVRDDAACENLRWLISFLCNHDAVALDWLVKWL 607 Query: 491 GMAL--LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGK 548 L +G + + GSGKS L I +Y + + N Sbjct: 608 AYPLQHMGAKMDTAVLFHSTMEGSGKSLLFADIMGELYGRYGATVGQTQLEGNFNAWQS- 666 Query: 549 ANPSLIRLMGSRIVIISET-NENDEIN-AAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 G + E + + N KIK M G + + N + E+ + Sbjct: 667 ---------GKLWAVFEEVVSRDQRYNQVGKIKHMITGKTVRMESKFINGWEEANHMNSV 717 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVI-PFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKA 665 F+ + + D RR +V+ P + R + A++L W L Sbjct: 718 FLSNEIMPWPISESD---RRMLVMWPLETLPPERQKAIARELANGGVAALYGWLLDVELG 774 Query: 666 YISKGLDVDIPEV----CLKAKEEERQGTDTYQAWIDDCCDIGENLW--EESHSLAKSYS 719 ++ E ++ + + W ++G LW + + + Sbjct: 775 EFNQRTRPPETEARQRLVELSRTAWQT---FFYLWRAG--ELGHGLWGCCLTSDVYAMFL 829 Query: 720 EYREQELNYDRKRISTRTVTLNLKQK 745 E+ +S +L K Sbjct: 830 EWCSHNKE---NSMSHTKFSLMFSAK 852 >gi|325106784|ref|YP_004267852.1| Bifunctional DNA primase/polymerase [Planctomyces brasiliensis DSM 5305] gi|324967052|gb|ADY57830.1| Bifunctional DNA primase/polymerase [Planctomyces brasiliensis DSM 5305] Length = 687 Score = 113 bits (281), Expect = 1e-22, Method: Composition-based stats. Identities = 41/278 (14%), Positives = 81/278 (29%), Gaps = 24/278 (8%) Query: 4 MQWKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKL----PACGFGFVCG 59 M + +A + GF + P G K+P ++ E+I++ P G Sbjct: 1 MDFLTEAIKYAEAGFPVFPCVPGSKQPLTSDGFKSATTDEEQIEQWWTETPNANIGIATA 60 Query: 60 VGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTT 119 L D+D D ++ F L + + + G K + Sbjct: 61 ----GLVVVDVDGIDNSWLQGEEELFSQLSLNAVCMTPRNGT--HFWFTQPAGEPVKCSA 114 Query: 120 ESTQGHLDILGCGQYFVAYNIHPKTKK-----EYTWTTPPHRFKVEDTPLLSEEDVEYLF 174 ++DI G G Y V + + K +Y W P + E + L Sbjct: 115 GKVAPNVDIRGDGGYVVVPPSYIEDDKKGIKGKYQWVYPQILGMRSELTPAPEWLMRQLN 174 Query: 175 KFFQEITVP------LVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDE 228 +E+ + +++ ++ + + EI + L + + D Sbjct: 175 GSPKELAKDFGGGNIIPSGQRNTALARIAGSVRRIGCSEHEIRSLLRAVNSQRCDPPIDN 234 Query: 229 WIPVVMAVHHETR--GSSKGKEIARRWSKQGSTYDEEN 264 V R W+ Q + + Sbjct: 235 -TEVDRIARSIARYEPDQTAVSHHEDWAGQDDEHAPQV 271 >gi|27383370|ref|NP_774899.1| hypothetical protein bll8259 [Bradyrhizobium japonicum USDA 110] gi|27356545|dbj|BAC53524.1| bll8259 [Bradyrhizobium japonicum USDA 110] Length = 223 Score = 113 bits (281), Expect = 2e-22, Method: Composition-based stats. Identities = 41/197 (20%), Positives = 75/197 (38%), Gaps = 18/197 (9%) Query: 11 KQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKID----KLP-ACGFGFVCGVGEQPL 65 + I G++ + + +G W+ S+ +++ P A G +CG L Sbjct: 13 RSLIAYGYRPV---ACSGKAAVMGNWQRSRWSAAQMEGIARNYPDATNTGLLCGE----L 65 Query: 66 YAFDIDSKDEKTANTFKDTFEILHGT--PIVRIGQKPKILIPFRMNKEGIKKKKTTESTQ 123 D+D+ D +TA+ + L G+ R+G+ PK L FR + K+ Sbjct: 66 VGLDVDTPDAETADAIRAMVMELPGSDRAPYRMGKAPKTLFAFRATEPREKRATGAYLIN 125 Query: 124 G---HLDILGCGQYFVAYNIHPKTKKEYTW-TTPPHRFKVEDTPLLSEEDVEYLFKFFQE 179 G ++ G FVA+ HP T + Y W P + + P ++ E ++ L + Sbjct: 126 GAKCQVEAFGERTQFVAFGTHPDTGRPYEWFNGSPAETPLAELPEITPEAIDELLARAEA 185 Query: 180 ITVPLVKDKKSIIPSKT 196 K + Sbjct: 186 YFAERGTLIKPASKASD 202 >gi|225575522|ref|ZP_03784132.1| hypothetical protein RUMHYD_03614 [Blautia hydrogenotrophica DSM 10507] gi|225037272|gb|EEG47518.1| hypothetical protein RUMHYD_03614 [Blautia hydrogenotrophica DSM 10507] Length = 616 Score = 112 bits (280), Expect = 2e-22, Method: Composition-based stats. Identities = 33/170 (19%), Positives = 52/170 (30%), Gaps = 13/170 (7%) Query: 2 PVMQWKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKL----PACGFGFV 57 V KE A + H G + P++ K P ++ + +I+ P G Sbjct: 8 AVASMKEWALRYAHLGLAVFPVKEKGKAPATPHGCKDATTDALQIETWWNINPQHNIGIA 67 Query: 58 CGVGEQPLYAFDIDS---KDEKTANTFKDTFEILHGTPI--VRIGQKPKILIPFRMNKEG 112 G L D+D K + T K+ + P + I +R Sbjct: 68 TGSRSGGLVVIDLDIDEEKGKNGYETLKEWQKEHGDLPETWISITGNGGYHYFYRDTAAN 127 Query: 113 IKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDT 162 K +DI G G Y VA Y W P +++ Sbjct: 128 KNKVA----LYDGVDIRGEGGYIVAPPSIHPNGHTYEWEQEPGEYEIAQV 173 >gi|284794737|ref|YP_003412090.1| hypothetical protein PhlaMp11 [Phaeoceros laevis] gi|254596057|gb|ACT75298.1| hypothetical protein PhlaMp11 [Phaeoceros laevis] Length = 316 Score = 112 bits (279), Expect = 3e-22, Method: Composition-based stats. Identities = 44/248 (17%), Positives = 89/248 (35%), Gaps = 17/248 (6%) Query: 420 DLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-E 478 LD + ++ ++G+L+ ET + + E ++T S G + P+ F + + Sbjct: 37 PKLD-DTIYILFENGVLNPETKEFFSHSPEFFLTTSIGFNWDPSCPTTVFFKYLDDFTQG 95 Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538 +++ + + + NKAQ F+ + G GGSGK+ L +++ G + + Sbjct: 96 NKDYKLFIQAFLQSLVKKQNKAQIFLVVIGPGGSGKTILAHVMTALAGKERTGTTGLKRL 155 Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598 + L+ +++ +E E A +K G D + A + N Sbjct: 156 ETD--------PFENSTLINKHLILANEAEEYHGT-ANNLKAFVGSDMLKASEKHKNDPK 206 Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFA------QKLETKYT 652 + I+ N L + +P + RR +I R + Sbjct: 207 TAYYKGQVVIIGNNPLTINDPGGSVLRRVRLIKALNVCQERKDLLSWSAGGWNGDIVPEL 266 Query: 653 LEAKKWFL 660 W L Sbjct: 267 PGIMAWAL 274 >gi|155122360|gb|ABT14228.1| hypothetical protein MT325_M674R [Paramecium bursaria chlorella virus MT325] Length = 653 Score = 112 bits (279), Expect = 3e-22, Method: Composition-based stats. Identities = 55/434 (12%), Positives = 129/434 (29%), Gaps = 40/434 (9%) Query: 363 KEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLL 422 + E + + W + QN++ S A + + L Sbjct: 227 MHSYRQVYEVKDFVYSRLRKEVSWAHWVNATQNMKNVSSAVEYLTNCHDSQL-----PNL 281 Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKE-------LYITKSTGTPFVEGEPSQEFLD---L 472 +G+ + E + K F E F Sbjct: 282 HKQRGTYAFMNGVYIASEDRFHCFDTETQPLSDNIVACKFFEQNFDNTEYDDWFDIPTPH 341 Query: 473 VSGYFE----SEEVMDYFTRCVGMALLGGN---KAQRFIHIRGVGGSGKSTLMNLIKYAF 525 + +V + +G L N Q G+ G+GKS L+ + F Sbjct: 342 LDSVMNHQQWDADVQRWLLCLIGRVLYKTNEIDSWQVCPFFVGLAGTGKSLLVLKVIKQF 401 Query: 526 GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGD 585 + +++I + + +V E + I A+ + + G+ Sbjct: 402 FETVDVGILSNNIERKFG---------ISAFFDKMLVCAPEIRNDLAIEQAEFQSIVSGE 452 Query: 586 CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQ 645 ++ + + + + + N+ + + RR IV F + + + D ++ Sbjct: 453 EISVAIKHQKAFMQ-EWDVPIVLAGNEVPGWADSGGSIQRRLIVFEFKQAVKSGDMKLSE 511 Query: 646 KLETKYTLEAKKWFLKGVK----AYISKGLDVDIPEVCLKAKEEERQGTDTYQAWI-DDC 700 KL T + K + Y + +PE + +E + T+ ++++ + Sbjct: 512 KLYT-EMPNIIRKANKAYRYFADKYAEDNIWTVLPEYFISTRETIARSTNFIESFLASEF 570 Query: 701 CDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQ-KGFIGGIKREKIEKE 759 +G + + +Y + K+++ + K I + Sbjct: 571 LVLGGDNIVPFSDFKSALKDYAATNSLH-MKQLTNEAFGGPFSKYKVTILPQQTLTYNGR 629 Query: 760 WKSKRIIKGLKLKP 773 + ++G+ LK Sbjct: 630 EMNTIFLRGVTLKS 643 >gi|332360063|gb|EGJ37877.1| virulence-associated protein E [Streptococcus sanguinis SK1056] Length = 546 Score = 111 bits (278), Expect = 3e-22, Method: Composition-based stats. Identities = 59/340 (17%), Positives = 123/340 (36%), Gaps = 30/340 (8%) Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFL-----DLVSGYFE 478 + +R+ + + + +TG+ + + + + ++ + + F Sbjct: 168 ADNRYTALGNLLYNAKTGETEPFSPQKLVIRKIDCNYIADAKEPNIKGWKVTEWLKNLFG 227 Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537 +E+ + + ++ G + + G GG+GK T LIK G Q V N + ++ Sbjct: 228 GDDELYRMALQIIKASVTGESLKNV-FWLLGKGGTGKGTFQELIKNLVGAQNVANLKINE 286 Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI-NAAKIKQMTGGDCMTARLNYGNT 596 + ++R L+G +VI + +I + + +T GD + Sbjct: 287 VNKSR--------FETSVLVGKTVVIGDDVQVRVKIKDVSTFFSLTTGDPIKIEEKGKTP 338 Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAK 656 YS T N + DA RR+ ++PF A + + A K + E Sbjct: 339 YS-VNLKMTIIQSSNGLPIINGDSDAIGRRFRILPFKGGFAGK-VNPAIKDDYICRREVL 396 Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIG------ENLWEE 710 ++ L A +K P+ KA + ++ + ++ + N + Sbjct: 397 EYLL--CLALNTKTDLKLNPQASQKAVYDFQEEVNEVVSFTRNFFKKNLVSSFLPNSFVW 454 Query: 711 SHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGG 750 + S+ EY + E + + R + NL GF G Sbjct: 455 W--VWLSFKEYYQIENDLTPNAL-HREIKNNLPD-GFKPG 490 >gi|155370772|ref|YP_001426306.1| hypothetical protein FR483_N674R [Paramecium bursaria Chlorella virus FR483] gi|155124092|gb|ABT15959.1| hypothetical protein FR483_N674R [Paramecium bursaria Chlorella virus FR483] Length = 653 Score = 111 bits (278), Expect = 4e-22, Method: Composition-based stats. Identities = 55/434 (12%), Positives = 129/434 (29%), Gaps = 40/434 (9%) Query: 363 KEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLL 422 + E + + W + QN++ S A + + L Sbjct: 227 MHSYRQVYEIKDFVYSRLRKEVSWAHWVNATQNMKNVSSAVEYLTNCHDSQL-----PNL 281 Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKE-------LYITKSTGTPFVEGEPSQEFLD---L 472 +G+ + E + K F E F Sbjct: 282 HKQRGTYAFMNGVYIASEDRFHCFDTETQPLSDNIVACKFFEQNFDNTEYDDWFDIPTPH 341 Query: 473 VSGYFE----SEEVMDYFTRCVGMALLGGN---KAQRFIHIRGVGGSGKSTLMNLIKYAF 525 + +V + +G L N Q G+ G+GKS L+ + F Sbjct: 342 LDSVMNHQQWDADVQRWLLCLIGRVLYKTNEIDSWQVCPFFVGLAGTGKSLLVLKVIKQF 401 Query: 526 GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGD 585 + +++I + + +V E + I A+ + + G+ Sbjct: 402 FETVDVGILSNNIERKFG---------ISAFFDKMLVCAPEIRNDLAIEQAEFQSIVSGE 452 Query: 586 CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQ 645 ++ + + + + + N+ + + RR IV F + + + D ++ Sbjct: 453 EISVAIKHQKAFMQ-EWDVPIVLAGNEVPGWADSGGSIQRRLIVFEFKQAVKSGDMKLSE 511 Query: 646 KLETKYTLEAKKWFLKGVK----AYISKGLDVDIPEVCLKAKEEERQGTDTYQAWI-DDC 700 KL T + K + Y + +PE + +E + T+ ++++ + Sbjct: 512 KLYT-EMPNIIRKANKAYRYFADKYAEDNIWTVLPEYFISTRETIARSTNFIESFLASEF 570 Query: 701 CDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQ-KGFIGGIKREKIEKE 759 +G + + +Y + K+++ + K I + Sbjct: 571 LVLGGDNIVPFSDFKSALKDYAATNSLH-MKQLTNEAFGGPFSKYKVTILPQQTLTYNGR 629 Query: 760 WKSKRIIKGLKLKP 773 + ++G+ LK Sbjct: 630 EMNTIFLRGVTLKS 643 >gi|49188486|ref|YP_025316.1| hypothetical protein pIT3_6 [Sulfolobus solfataricus] gi|46560102|gb|AAT00521.1| RepA [Sulfolobus solfataricus] Length = 915 Score = 111 bits (277), Expect = 5e-22, Method: Composition-based stats. Identities = 41/241 (17%), Positives = 76/241 (31%), Gaps = 14/241 (5%) Query: 8 EQAKQAIHNGFKLIPLRLGDKRPQ-RLGKWEEQLLSSEKIDKL---PACGFGFVCGVGEQ 63 + A + G ++PL DK P ++E+L + E++ K P+ + G Sbjct: 36 DYALYYVSVGLSVVPLVPKDKVPIIEWKPYQERLPTEEEVRKWFRDPSTNIAIITGAVSG 95 Query: 64 PLYAFDIDSKDEKTANTFKDTFEILHG--TPIVRIGQKPKILIPFR---MNKEGIKKK-- 116 L D D + T K ++ + G I + K + ++K K+ Sbjct: 96 NLVGIDFDDPNVYTDFADKLFYDPILGDKAYSTWITKTGKGYHIYFRIDVDKGVFKQIFR 155 Query: 117 KTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKF 176 + + H+D+ G YFVA + Y + P K L E E L K Sbjct: 156 QKIDIEGKHIDMKAEGGYFVAPPSIHPSGSRYEFLAGPPMNKEPAVLSLKEW--ERLLKL 213 Query: 177 FQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAV 236 + + P N + + + E + + + Sbjct: 214 L-GVEPWEGLLRILNAPDSATPGNGKAEQRKEQSASQTPRNVSNCKKLGEKEILRIEELL 272 Query: 237 H 237 Sbjct: 273 E 273 >gi|261492854|ref|ZP_05989401.1| alpha replication protein of prophage CP-933I [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261311536|gb|EEY12692.1| alpha replication protein of prophage CP-933I [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 313 Score = 111 bits (276), Expect = 7e-22, Method: Composition-based stats. Identities = 37/222 (16%), Positives = 85/222 (38%), Gaps = 15/222 (6%) Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFV-EGEPSQEFLDLVSGY-FESEEV 482 + F+ +G+L+ +TG+ + ++ ++ + E +P F ++ ++ Sbjct: 102 NLDFIPFLNGVLNRKTGEFLPHNEKYFLRNVLPFDYSLEDKPMPNFEKWINWVSQNDKQK 161 Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542 M L + Q F+ I GVGGSGKS + G + + D+ + Sbjct: 162 KRTILAAFYMILTNSYEWQLFLEITGVGGSGKSIFNEIAIMLVGEENSTSVYLKDLEKAS 221 Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEI-NAAKIKQMTGGDCMTARLNYGNTYSESP 601 R+ ++I ++ + + A +K +TG D M Y N + ++ Sbjct: 222 -----------SRIKLLDKILIFAPDQGRIVTDGAVLKGLTGDDVMHFEPKYKNAF-DAR 269 Query: 602 ASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASF 643 + N+ + + RR ++ F + + ++ + Sbjct: 270 VKSIFLMTNNEPIIFTENNGGIARRRVLFHFSEKVPEKNERY 311 >gi|195982544|ref|YP_002122374.1| V13 [Sputnik virophage] gi|226732444|sp|B4YNF3|V13_SPTNK RecName: Full=Putative helicase V13 gi|193245553|gb|ACF16997.1| V13 [Sputnik virophage] Length = 779 Score = 110 bits (275), Expect = 7e-22, Method: Composition-based stats. Identities = 81/498 (16%), Positives = 142/498 (28%), Gaps = 34/498 (6%) Query: 290 LFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLD 349 ++ I + +FS Y K + KN + L Sbjct: 288 VYEQINYKINLEEKPMEHKLKFEVPIFSDYVDSDSDCQI--KLFELVGKNKFKFCNGVLW 345 Query: 350 KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSL 409 F S L E N + + E K Sbjct: 346 VFDDQTGMFENSNHVVFRYLKRYKEYFNFIISTDDDGNHKTKNYATDEVLRKKIIGFIKD 405 Query: 410 EAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP-TKELYITKSTGTPFVEGEPSQE 468 E + S L +DGI + T + + F + Sbjct: 406 ECQDNEWMLKTQTSSLGYLL-FKDGIYNFNTSTFTEGFDPNIVFKFRVPWKF-PKYDKEL 463 Query: 469 FLDLVSGYFES-EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 F + + F + AL G K ++ G +GKS L+ +++Y FG+ Sbjct: 464 IKKAYKLSFGALFDNPKPFITSLACALAGEIKLKKIYFCPGKSNAGKSYLIKMLQYCFGD 523 Query: 528 QYVINAEASDIMQNRPPEAGKANP-SLIRLMGSRIVIISETNENDEINAAKIKQM-TGGD 585 + ++ A L +RIV+ SE + I+ IK+ + GD Sbjct: 524 YIGTINGENISYNSKDSRDEAAKYRWAYLLANTRIVMSSEISMKKSIDGNMIKKFASAGD 583 Query: 586 CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN------- 638 + R + + +FT F + N + D+A R + F Sbjct: 584 KIVGR-KHCESEISFTPNFTIFCMFNDIPEIEPHDEAVSNRLVYHEFPYVFVKEEELNEK 642 Query: 639 -----RDASFAQKLETKY-TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDT 692 +D K +TK L K Y+ GL + + + + D Sbjct: 643 PYNKLKDEDLDSKYQTKDFASGFIHILLDAYKNYLENGL-PEFDNEVKEKWTAQTKQIDK 701 Query: 693 YQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIK 752 + I++ ++ N+ + +E + D K IS L + + Sbjct: 702 VTSIINEYYEVTNNVK----DFVPLNEILKFKEQHKDLKTISKNRFNEILVE-------E 750 Query: 753 REKIEKEWKSKRIIKGLK 770 + E R GLK Sbjct: 751 LKLKEGRSAKLRYWSGLK 768 >gi|220915108|ref|YP_002490414.1| hypothetical protein Mnod_7757 [Methylobacterium nodulans ORS 2060] gi|219952962|gb|ACL63348.1| hypothetical protein Mnod_7757 [Methylobacterium nodulans ORS 2060] Length = 885 Score = 110 bits (275), Expect = 8e-22, Method: Composition-based stats. Identities = 53/354 (14%), Positives = 95/354 (26%), Gaps = 53/354 (14%) Query: 6 WKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGF-------GFVC 58 W++ +G++ I L G+K P+ + + ++ +++ G GF Sbjct: 19 WQDYGHTVRKHGWRAIYLEHGEKGPKYADWNKRSVPTAADVERWQRSGLPGQRPNMGFNL 78 Query: 59 GVGEQ-----PLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEG- 112 G + A D D A + E R+G K+ F K Sbjct: 79 GPQPGLPEGEHVVAVDADVFTPAAATAVNEILERRLPGAPHRLGNPAKVGTRFVRTKTAD 138 Query: 113 -------------IKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKV 159 T+ +++LG GQ V + HP YTW ++ Sbjct: 139 GSEPVRRQGRRFIFDGAPDTKENHNRVELLGQGQQSVVHGAHPC-GALYTWPDGISIVEL 197 Query: 160 --EDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIP-SKTWTNNNNRQYT---NREITAF 213 E PL+ +++ + + S S++ N T + Sbjct: 198 HPEALPLIPIDELNAIIAECDAAMEAVGGKVVSGATFSRSGRNGGGADLTPLVEADAEVL 257 Query: 214 LSCFGEEFYN-GSHDEWIPVVMAVH-------HETRGSSKGKEIARRWSKQGSTYDEENF 265 LS G + +W+ A E R RW T D + Sbjct: 258 LSGLGSVRNDLSDRGDWVMFTKAFAALCVPALGEGRVVDALLGFTDRWEAAPETGDPDEI 317 Query: 266 NYKWDT------------FDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRF 307 F G + L + + + Sbjct: 318 LRIIREEEKPAHVGLREVFHAMRKGGAPLPSNFLARLDFARVPVNDNDMPRPEL 371 >gi|92118040|ref|YP_577769.1| hypothetical protein Nham_2527 [Nitrobacter hamburgensis X14] gi|91800934|gb|ABE63309.1| hypothetical protein Nham_2527 [Nitrobacter hamburgensis X14] Length = 756 Score = 110 bits (275), Expect = 9e-22, Method: Composition-based stats. Identities = 94/648 (14%), Positives = 180/648 (27%), Gaps = 121/648 (18%) Query: 2 PVMQWKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLS-SEKIDKL--PACGFGFVC 58 P Q + G +RL K P +G+W++ + + GF Sbjct: 44 PSFQDASLLDEYEQAGHGAKLIRLRGKEP--VGRWKDLPSIGVDGGKRWMAKGGNVGFRM 101 Query: 59 GVGEQPLYAFDID-----SKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGI 113 DID D+ A +D L P V G + FR E Sbjct: 102 ---SNTDLVIDIDPRRFPDSDDVLARFLRDF--DLPAHPFVLTG-GGGYHLYFRKPAE-- 153 Query: 114 KKKKTTESTQGHLDILGCGQYFVAYNI-HPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEY 172 + + G Y V+ HP T + Y + P R + + P++ + ++ Sbjct: 154 DIVRYEHDNYPGFEFRTSGHYVVSAGSVHPDTGRLYRFDDDPLRCSLSEAPMMPDRLLDA 213 Query: 173 LFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPV 232 + K E + ++ + E A + +W + Sbjct: 214 IRKPNIEAS------------------SDEAGALDPETLAEWLVDVDPTEFKDQRKWQDM 255 Query: 233 VMAVHHETRGSSKGKEIARRWSKQGSTYDE--ENFNYKWDTFDFEEIGDTAKKRSTF--T 288 +MA HH T G G + WS Y + E +WD + G T + + Sbjct: 256 MMACHHATNG--TGVDEFIVWSTSDPEYSDYSEVIRQRWDPLEAIPDGITVRTLIGYLPR 313 Query: 289 SLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTL 348 +LI + F D + K ++ W Sbjct: 314 EKRREAVELINRTNALDDFPDDLDAEP-------------------DKTRSVWDDW---- 350 Query: 349 DKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQS 408 F+ + V + ++ + + +S Sbjct: 351 --------VFVADAMQFVRREDGKKYRTDQWKALYAGLNPDGEVLNAIWKGRVPMRKFES 402 Query: 409 LEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE 468 L D + +DG+ + + G Sbjct: 403 LVYLPETGEFPDGESGRRYNIWRKDGV-EAKAGDVTP----------------------- 438 Query: 469 FLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIR--GVGGSGKSTLMNLIKYAFG 526 FL ++ F + D+ + + L+ + + G G+GKS + L++ G Sbjct: 439 FLVHLAYLFPDGKDRDHVLDYLAL-LVQRPADKIHFALLIRGAQGTGKSWIGRLMERIVG 497 Query: 527 NQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISET-NENDEINAAKIKQMTGGD 585 ++ + RP + + G+++ +I E + A ++K Sbjct: 498 SRNTV----------RPSNEEVVSHWTAWMEGAQLAVIEELMTLGRKEVANRLKPAITDP 547 Query: 586 CMTARLNYGNTYSESPASFTPFIVPNK---HLFVRNPDDAWWRRYIVI 630 + + YS P N RR++V+ Sbjct: 548 TIRIEEKNCSLYS-IPNCLNFIGFTNHEDALPIEHGD-----RRWLVV 589 >gi|254497903|ref|ZP_05110668.1| putative truncated Phage / plasmid primase P4 [Legionella drancourtii LLAP12] gi|254352901|gb|EET11671.1| putative truncated Phage / plasmid primase P4 [Legionella drancourtii LLAP12] Length = 301 Score = 110 bits (275), Expect = 9e-22, Method: Composition-based stats. Identities = 39/190 (20%), Positives = 63/190 (33%), Gaps = 19/190 (10%) Query: 13 AIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKI-----DKLPACGFGFVCGVGEQPLYA 67 G+ + PL K+ L W+E ++ I K P G V G L Sbjct: 44 YCDRGWAVHPLN--KKKRPLLKGWQENATTNPNIFMQWLQKWPWANVGIVTGNISN-LLI 100 Query: 68 FDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLD 127 D+D + + D L +PIV + F T ++D Sbjct: 101 LDVDGGEGINSLRGLD----LPVSPIVVTARGH--HYYFNCPSILSNVSTTRSGLLSNVD 154 Query: 128 ILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITV-PLVK 186 G G Y A +T +Y W+ P D P E ++ L + P+ Sbjct: 155 TRGRGGYITAPPSIHETGHQYYWSEPLDG----DLPDAPEWLIQRLLPPVKISYKMPIFI 210 Query: 187 DKKSIIPSKT 196 D+ + ++T Sbjct: 211 DRTTSHYART 220 >gi|260892768|ref|YP_003238865.1| Bifunctional DNA primase/polymerase [Ammonifex degensii KC4] gi|260864909|gb|ACX52015.1| Bifunctional DNA primase/polymerase [Ammonifex degensii KC4] Length = 599 Score = 110 bits (274), Expect = 1e-21, Method: Composition-based stats. Identities = 35/231 (15%), Positives = 62/231 (26%), Gaps = 32/231 (13%) Query: 1 MPVMQWKEQAKQAIHNGFKLIPL-RLG--------------DKRP--QRLGKWEEQLLSS 43 M E A G+ +IPL G K P +++E+ + Sbjct: 1 MSAKAALEAALSYFGLGWSVIPLHTPGPAGGCSCGRDCDSPGKHPRLASWKEFQERRPTE 60 Query: 44 EKI-----DKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQ 98 E++ +K + G V G + D+D +D G P + + Sbjct: 61 EELREWWGEKWSSANLGLVTGRVS-GVVVVDLDGEDG------VRAVRERGGLPPTPVVR 113 Query: 99 KPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFK 158 K + E + T +D+ G G V T + Y W ++ Sbjct: 114 TGKGWHYYFAYPEVV--VPTRAGVLPGVDVRGDGGLAVLPPSLHPTGRRYEWARGRSPWE 171 Query: 159 VEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNRE 209 V P E + + + V + Sbjct: 172 VPLAPC-PEWLLGLVRGRGEGGDDGGVAGADRPRLDPLAVLAGVEEGRRDM 221 >gi|75812724|ref|YP_320341.1| hypothetical protein Ava_C0063 [Anabaena variabilis ATCC 29413] gi|75705480|gb|ABA25152.1| conserved hypothetical protein [Anabaena variabilis ATCC 29413] Length = 332 Score = 110 bits (274), Expect = 1e-21, Method: Composition-based stats. Identities = 45/313 (14%), Positives = 84/313 (26%), Gaps = 56/313 (17%) Query: 18 FKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLP---------------ACGFGFVCG--V 60 ++++P KRP WE+ S +++ G VCG Sbjct: 19 WRIVPTF--GKRPLGKE-WEKNTYSPKELQTELIRRRLKVWTNNRFITPTGIALVCGFNH 75 Query: 61 GEQPLYAFDIDS---------------------------KDEKTANTFKDTFEILHGTPI 93 + L A D D +D + + L T Sbjct: 76 PQGYLVAIDCDGETSWRQIIQINEHSEPEELNHLTPTETRDTPMESLCDRAQQYLPPTIA 135 Query: 94 VRIGQKPKILIPFRMNKEGIKKKKTTESTQG---HLDILGCGQYFVAYNIHPKTKKEYTW 150 G+K + + + K+ + G HL+ G + + Y W Sbjct: 136 FTSGRKYRSQRLYLIPNSKACDVKSRKIKTGKDEHLEFRGKNLASILPPSFHPEGRNYRW 195 Query: 151 TTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNN--NRQYTNR 208 + + + + + ++ + +K + TN Sbjct: 196 LPGCSPSE-RQIEIAPDWVIAQMLVKQEKTRKFNLPKEKYNRRYGVDRYAHLIPSIETNI 254 Query: 209 EITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYK 268 + L + + WI V MA+ S + WS+ Y YK Sbjct: 255 QTALVLLEVIHPRFADDYHSWIQVGMALKSV---SPILFKAWDTWSQLSPKYKPGECAYK 311 Query: 269 WDTFDFEEIGDTA 281 W +F+ I Sbjct: 312 WQSFNKTGITIRT 324 >gi|240142182|ref|YP_002966692.1| hypothetical protein MexAM1_META2p0504 [Methylobacterium extorquens AM1] gi|240012126|gb|ACS43351.1| Hypothetical protein MexAM1_META2p0504 [Methylobacterium extorquens AM1] Length = 1438 Score = 110 bits (274), Expect = 1e-21, Method: Composition-based stats. Identities = 57/260 (21%), Positives = 101/260 (38%), Gaps = 31/260 (11%) Query: 6 WKEQAKQAIHNGFKLIPLRL-GDKR-PQRLG----KWEE---------QLLSSEKIDKL- 49 + + A++ + NG+ + P + GD+R P R+ KW E + + E+ + Sbjct: 42 FGDVARELVANGWAVYPQEIYGDRRLPGRIRREVIKWREDHRLDERLPRPEALEEWIRWC 101 Query: 50 PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHG-TPIVRIGQKPKILIPFRM 108 PA V G G ++ DID DE + + E + G TP+ R+G PK+ + FR Sbjct: 102 PAHNVALVLGRGSGDAFSVDIDVLDELLSYDIRRLAEDILGATPLRRVGNAPKVALFFRW 161 Query: 109 --NKEGIKKKKTT--------ESTQGHLDILGCGQYFVAYNIHPKTKKEYTWT-TPPHRF 157 +E K ++T + LDIL + Y H +T + ++W P Sbjct: 162 ASPEEAHKLQRTAFKFRDATGRGREQGLDILNYAKSVTIYGRHHRTGRNFSWEADTPLTT 221 Query: 158 KVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCF 217 + ED P ++ EDV+ +F + V + + + + S Sbjct: 222 RPEDLPAVTAEDVQ---RFVDAVDVLHPFARGAGFQAGEVVLEFDETTQLTVPRRRRSAD 278 Query: 218 GEEFYNGSHDEWIPVVMAVH 237 G + D I + Sbjct: 279 GAANWVEDSDGRITDGREEY 298 >gi|9633891|ref|NP_051969.1| gp080R [Rabbit fibroma virus] gi|6578610|gb|AAF17964.1|AF170722_82 gp080R [Rabbit fibroma virus] Length = 786 Score = 109 bits (273), Expect = 1e-21, Method: Composition-based stats. Identities = 56/318 (17%), Positives = 104/318 (32%), Gaps = 47/318 (14%) Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP--TKELYITKSTG 457 + + ++ + +T D L ++G+LD+ G +K+ T STG Sbjct: 386 PRKRKVIENNLKDMLVDVTET--DVYPCILPFKNGVLDISNGTFYSGHESKDFICTVSTG 443 Query: 458 TP-------FVEGEPSQEFLDLVSGYFE----SEEVMDYFTRCVGMALLGGNKAQRFIHI 506 + E +E + +++ +++ + + R + L G K Sbjct: 444 FNLNMEKFLDDDSEEMKELVSIINDIQPLTEENKQNRELYERTLSSCLCGTTKQ-CITFF 502 Query: 507 RGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISE 566 G +GKST L+ A GN ++ + NP + + R V SE Sbjct: 503 FGETATGKSTTKKLLHSAIGNLFIETGQTILTE----AMDKGPNPFIANMHLKRSVFCSE 558 Query: 567 TNE-----NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDD 621 + + I A IK++T C+ R + N + + I N D+ Sbjct: 559 LPDFACSTSRRIRADNIKKLT-EPCIVGRQCFSNRINN-KNHASIIIDTNYKPVFDRVDN 616 Query: 622 AWWRRYIVIPFDKPIANR------------------DASFAQKLETK-YTLEAKKWFLKG 662 A RR ++ F A D + K++ Y ++ Sbjct: 617 AIMRRISLVRFRTHFAQTMTKKEMLNKSAYDDVKPLDETLDMKIQKNYYRYAFLNLLVQW 676 Query: 663 VKAYISKGLD-VDIPEVC 679 + Y L PE Sbjct: 677 YQKYHVPHLKLFSTPENV 694 >gi|18640166|ref|NP_570240.1| SPV080 putative NTPase [Swinepox virus] gi|18448573|gb|AAL69819.1| SPV080 putative NTPase [Swinepox virus] Length = 786 Score = 109 bits (272), Expect = 2e-21, Method: Composition-based stats. Identities = 63/372 (16%), Positives = 124/372 (33%), Gaps = 53/372 (14%) Query: 351 ITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQN-----VEENSKAKST 405 I S + L + + + + + + S + + + + + K K+ Sbjct: 333 IMDSNVIHLTDRGDHIVWIKNTWKFSTEESLITKLILSMKEQLPSEYIPDILCPRKRKAI 392 Query: 406 AQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP--TKELYITKSTGTPFV-- 461 +L+ + +I + D+ L ++GIL++ TG+ +K+ T STG Sbjct: 393 ENNLKDMLVDNIET---DTYPNMLPFKNGILNISTGEFYTGVESKDFICTVSTGFELDME 449 Query: 462 -----EGEPSQEFLDLVSGYFE--SEEV--MDYFTRCVGMALLGGNKAQRFIHIRGVGGS 512 E +E +++ E + F + + L G K G + Sbjct: 450 KFSDTESTEMKELETILNDIQPLTDENRCNRELFEKILSSCLHGSTKQ-CITFFFGETAT 508 Query: 513 GKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE--- 569 GKST L++ + G+ ++ + NP + + R V SE + Sbjct: 509 GKSTTKKLLRSSIGDLFIETGQTILTE----VMDKGPNPFISNMHLKRSVFCSELPDFAC 564 Query: 570 --NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627 + +I A IK++T C+ R + N + T I N D+A RR Sbjct: 565 SGSKKIRADNIKKLT-ETCIVGRACFSNKINN-RNHATIIIDTNYKPIFDRVDNALMRRI 622 Query: 628 IVIPFDKPIANR------------------DASFAQKLET-KYTLEAKKWFLKGVKAY-I 667 ++ F D + K++ Y +K + Y + Sbjct: 623 SLVKFRTHFTQPSSNISTRNSTAYDEIKPLDETLDLKIQRNNYRYPFLHLLVKWYRKYHL 682 Query: 668 SKGLDVDIPEVC 679 + PE Sbjct: 683 PTMVLYPTPEAV 694 >gi|71900789|ref|ZP_00682909.1| phage-related protein [Xylella fastidiosa Ann-1] gi|71729466|gb|EAO31577.1| phage-related protein [Xylella fastidiosa Ann-1] Length = 557 Score = 109 bits (271), Expect = 2e-21, Method: Composition-based stats. Identities = 31/213 (14%), Positives = 68/213 (31%), Gaps = 19/213 (8%) Query: 294 HGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITA 353 + +D N + + + +AD ++W T Sbjct: 353 AVERHDVPEALYLTTDTANAVRIAKHYGKRLMVSAD----------RWFVWEGTHWAHGM 402 Query: 354 SIMNFLV-SMKEDVFDLSEEPEDNNKNSKSPRFW-FNTDYRRQNVEENSKAKSTAQSLEA 411 L + + + E+ +++ + + + S+ +ST ++ A Sbjct: 403 DAARLLALKLSKIIRGEVEQWRTKRADTEKEKSKNAKIAAALEAWGKKSEMRSTVEAAMA 462 Query: 412 --GSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF 469 S+ + ++ LD+ L +G +DL TG E YIT+ F + EF Sbjct: 463 LAKSMLVVKAERLDTDPWLLNCANGTVDLRTGTLKAHRPEDYITRVVPINFDPKATAPEF 522 Query: 470 LDLVSGYFES-----EEVMDYFTRCVGMALLGG 497 + ++ + + + R G G Sbjct: 523 ITTLARITCEYGESFKPLCAFLQRWFGYCATGS 555 >gi|310828796|ref|YP_003961153.1| hypothetical protein ELI_3221 [Eubacterium limosum KIST612] gi|308740530|gb|ADO38190.1| hypothetical protein ELI_3221 [Eubacterium limosum KIST612] Length = 893 Score = 109 bits (271), Expect = 3e-21, Method: Composition-based stats. Identities = 81/666 (12%), Positives = 166/666 (24%), Gaps = 74/666 (11%) Query: 10 AKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKID----KLPACGFGFVCGVGEQPL 65 A + GF + P+ K P ++ +I+ K P G + Sbjct: 8 ALKFARGGFPVFPVAARGKAPLTENGLKDATTDERQINRWWSKWPDANIAMATG---HGM 64 Query: 66 YAFDIDSKDEKTAN------TFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTT 119 DID ++ + ++ FE L T +V G I F+ +KE + Sbjct: 65 VVLDIDVDADRGVDGYDSLRLWESEFEALPETWMVLTG-GGGIHYYFKTDKE----IRNR 119 Query: 120 ESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQE 179 +D+ G G Y + + Y W +KV L E+ + Sbjct: 120 TGVLPGVDVRGDGGYVIVPPSIHPNGRAYEWEAVSFDYKVPVP--LPEDLYALMVNNSTR 177 Query: 180 ITVPLVKDKKSIIPSKTWT------NNNNRQYTNREITAFLSCFGEEFYNGSH---DEWI 230 ++ + T + + T+ EI A + ++ + + Sbjct: 178 DHPKFELPERIPEGERNDTLFRYAASLQGKGRTDFEIMAIVQAANDQCCDVPLKPGEVET 237 Query: 231 PVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSL 290 V A+ E + + + + K Sbjct: 238 LVNSALR--YDKGEDQAATTAESKDTLKKVAEAEDVERLLSRETFDHIFAIKDPFEREKQ 295 Query: 291 FYHHGKLIPKGLLASRFS-------DAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYI 343 + F+ A + K K + Sbjct: 296 IAKMKAAARSLKVTQSFNNLLRAHQKERAMAKKQAESQDIQFTDPPIKG--LKCGEWIAE 353 Query: 344 WSLTL---DKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENS 400 S +K + + ++E + + ++ F D + Q + Sbjct: 354 DSGIYRCVEKNSGDAFKEYACSHPVI--ITERLCNIDTETEKLTLAFLKDDKWQTLIVER 411 Query: 401 KAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPF 460 ++ + + I + ++ + D L+ K+ + + GT F Sbjct: 412 STLASRTKVIELADRGIAVNSENAKAFIRYLAD--LESLNLDKIPAYQSIDRMGWIGTAF 469 Query: 461 VEGEPSQEFL---------------------DLVSGYFESEEVMDYFTRC--VGMALL-G 496 F + V+ L+ Sbjct: 470 SPYVKDIRFDGDAKNREIFEAVTEAGDYETWKTLCQSIRQTSVIGKIMLAASFASCLIEP 529 Query: 497 GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRL 556 K F+H+ G +GK+ + L +GN V S E A I L Sbjct: 530 MAKLPFFVHLWGGTEAGKTVALMLAASVWGNPAVGKLTRSFNATLVGLERAAAFNYAIPL 589 Query: 557 MGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV 616 + + I + + + G + R F+ + Sbjct: 590 VLDELQTIKD-SYGGGFDKIVYNLCEGQGKI--RGLKAGGIERMNRWKNVFLSSGEQPLS 646 Query: 617 RNPDDA 622 + Sbjct: 647 SDTSGG 652 >gi|124378233|ref|YP_001029427.1| GfV-D1-ORF1 [Glypta fumiferanae ichnovirus] gi|124270640|dbj|BAF45563.1| GfV-D1-ORF1 [Glypta fumiferanae ichnovirus] Length = 833 Score = 108 bits (269), Expect = 4e-21, Method: Composition-based stats. Identities = 58/442 (13%), Positives = 124/442 (28%), Gaps = 69/442 (15%) Query: 306 RFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKED 365 R +A+F ++ + +Y+ +Y Sbjct: 378 RSEAELAQALFDVF--------PNISNYYRYSHKRIYHCDEK------------------ 411 Query: 366 VFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITS----DL 421 ++ + + + + + N+ + + I + Sbjct: 412 -TNIWNSLTNYDFYRQIRQKLERKIQLTEAELINNSTTDIVLKIRDIIVRKIEDVNFTEQ 470 Query: 422 LDSSSRFLGEQDGILDLE--TGQKVKPTKELYITKSTGTPFVEGEPSQE---FLDLVSGY 476 LDS S + +D+ E I +TG + G + + Sbjct: 471 LDSVSNLFVTDNKAIDMSIIPPVIRSIKCEDLIKTTTGWTYDPGLSCKYKKSVKSYFNKL 530 Query: 477 FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGV--GGSGKSTLMNLIKYAFGNQYVINAE 534 +F + L G + + + G SGKSTL++L++ FGN YV ++ Sbjct: 531 LPKPCEQRWFLSFIARMLNGKRCNEPCVILTDNRGGKSGKSTLIHLLRAVFGNYYVNDST 590 Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594 + + N R++++ +N+ +N IK D Y Sbjct: 591 IVPRRTKYFIRSSQEN--------KRLLVVDGLEKNETLNCDFIKSTINYD-------YS 635 Query: 595 NTYSESPASFTPFIVPNK-HLFVRNPDDAWWRRYIVIPFDKPI-------------ANRD 640 N S P + IV N + D+ + + + P + Sbjct: 636 NRRSIFPVNVGLIIVSNTGKPILDTSDEDFLKMIVTCPMRSRFVSKKKMAHMKKHGEDIT 695 Query: 641 ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDC 700 ++ ++ + + KG +P+ + D Y W+D Sbjct: 696 DTYIADNSLRHQFSEWRSAVLDFLLEFYKGSLPPVPDSMIDCNNSNFHDNDFYVNWLDTH 755 Query: 701 --CDIGENLWEESHSLAKSYSE 720 + + + K E Sbjct: 756 ISVVKNSGSFVTALQIVKQMKE 777 >gi|124378265|ref|YP_001029444.1| GfV-D4-ORF1 [Glypta fumiferanae ichnovirus] gi|124270649|dbj|BAF45569.1| GfV-D4-ORF1 [Glypta fumiferanae ichnovirus] Length = 849 Score = 108 bits (269), Expect = 4e-21, Method: Composition-based stats. Identities = 58/442 (13%), Positives = 125/442 (28%), Gaps = 69/442 (15%) Query: 306 RFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKED 365 R +A+F ++ + +Y+ +Y Sbjct: 395 RSEAELAQALFDVF--------PNISNYYRYSHKRIYHCDEK------------------ 428 Query: 366 VFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITS----DL 421 ++ +++ + + + N+ + + I + Sbjct: 429 -TNIWNSLTNDDFYRQIRQKLERKIQLTEAELINNSTTDIVLKIRDIIVRKIEDVNFTEQ 487 Query: 422 LDSSSRFLGEQDGILDLE--TGQKVKPTKELYITKSTGTPFVEGEPSQE---FLDLVSGY 476 LDS S + +D+ E I +TG + G + + Sbjct: 488 LDSVSNLFVTDNKAIDMSIIPPVIRSIKCEDLIKTTTGWTYDPGLSCKYKKSVKSYFNKL 547 Query: 477 FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGV--GGSGKSTLMNLIKYAFGNQYVINAE 534 +F + L G + + + G SGKSTL++L++ FGN YV ++ Sbjct: 548 LPKPCEQRWFLSFIARMLNGKRCNEPCVILTDNRGGKSGKSTLIHLLRAVFGNYYVNDST 607 Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594 + + N R++++ +N+ +N IK D Y Sbjct: 608 IVPRRTKYFIRSSQEN--------KRLLVVDGLEKNETLNCDFIKSTINYD-------YS 652 Query: 595 NTYSESPASFTPFIVPNK-HLFVRNPDDAWWRRYIVIPFDKPI-------------ANRD 640 N S P + IV N + D+ + + + P + Sbjct: 653 NRRSIFPVNVGLIIVSNTGKPILDTSDEDFLKMIVTCPMRSRFVSKKKMAHMKKHGEDIT 712 Query: 641 ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDC 700 ++ ++ + + KG +P+ + D Y W+D Sbjct: 713 DTYIADNSLRHQFSEWRSAVLDFLLEFYKGSLPPVPDSMIDCNNSNFHDNDFYVNWLDTH 772 Query: 701 --CDIGENLWEESHSLAKSYSE 720 + + + K E Sbjct: 773 ISVVKNSGSFVTALQIVKQMKE 794 >gi|225194770|gb|ACN81893.1| DNA-dependent NTPase [Skunkpox virus] Length = 785 Score = 108 bits (269), Expect = 4e-21, Method: Composition-based stats. Identities = 64/358 (17%), Positives = 122/358 (34%), Gaps = 51/358 (14%) Query: 350 KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR-----QNVEENSKAKS 404 +I + L + + ++ + NN+ + + ++ + K K+ Sbjct: 332 RILDTNSVLLTERGDHIVWINNSWKFNNEEPLITKLILSIRHQLPKEYSSELLCPRKRKT 391 Query: 405 TAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVE 462 ++ + S+ + D+ L ++G+LDL G K+ T STG F + Sbjct: 392 VEANIRDMLVDSVET---DTYPDKLPFKNGVLDLVDGMFYSGDEAKKYTCTVSTGFRFDD 448 Query: 463 G---EPSQEFLDL---VSGYFE----SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGS 512 E S E +L ++ +++ + + + + L G K G + Sbjct: 449 TKFVEESPEMEELVNIINDIQPLTDENKKNRELYEKTLSSCLCGTTK-GCLTFFFGETAT 507 Query: 513 GKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE--- 569 GKST L+K A G+ +V + NP + + R V SE + Sbjct: 508 GKSTTKRLLKSAIGDLFVETGQTILTD----VLDKGPNPFIANMHLKRSVFCSELPDFAC 563 Query: 570 --NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627 + +I + IK++T C+ R + N + T I N D+A RR Sbjct: 564 SGSKKIRSDNIKKLT-EPCVIGRPCFSNKINN-RNHATIIIDTNYKPVFDRIDNALMRRI 621 Query: 628 IVIPFDKPIANR------------------DASFAQKLETK-YTLEAKKWFLKGVKAY 666 V+ F + D K++ Y +K + Y Sbjct: 622 AVVRFRTHFSQPSGREAAENNDAYDKVKLLDEGLDNKIQNNRYRFAFLYLLVKWYRKY 679 >gi|148912960|ref|YP_001293274.1| hypothetical protein GTPV_gp079 [Goatpox virus Pellor] Length = 786 Score = 108 bits (269), Expect = 4e-21, Method: Composition-based stats. Identities = 63/372 (16%), Positives = 123/372 (33%), Gaps = 53/372 (14%) Query: 351 ITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQN-----VEENSKAKST 405 I S + L + V + + N + N + + + K K Sbjct: 333 IMDSNVIHLTERGDHVVWIKNSWKFNTDEPLITKLILNMKDQLPSEYIPDILCPRKRKVI 392 Query: 406 AQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP--TKELYITKSTGTPFV-- 461 +L+ + +I + D+ L ++G+LD+ +G+ K +K+ T STG Sbjct: 393 ENNLKDMLVDTIET---DTYPFMLPFKNGVLDICSGKFYKGAESKKFICTVSTGFNLDIE 449 Query: 462 -----EGEPSQEFLDLVSGYFE----SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGS 512 + + ++ ++++ ++E + + R + L G K G + Sbjct: 450 KYLNEDSQEMKDLNNIINDIQPLTEENKENRELYERTLSSCLCGSTKQ-CLTFFFGETAT 508 Query: 513 GKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE--- 569 GKST L++ + G ++ + NP + + R V SE + Sbjct: 509 GKSTTKKLLQSSIGELFIETGQTILTD----IIDKGPNPFISNMHLKRSVFCSELPDFSC 564 Query: 570 --NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627 + +I A IK++T C+ R + N + I N D+A RR Sbjct: 565 SGSKKIKADNIKKLT-EPCIVGRPCFSNRIHN-KNHASIIIDTNYKPVFDKVDNALMRRI 622 Query: 628 IVIPFDKPI------------------ANRDASFAQKLETKY-TLEAKKWFLKGVKAY-I 667 ++ F D + K++ Y +K + Y I Sbjct: 623 ALVKFRTHFSQYSNSDSVKNNAAYDDVKPLDENLDMKIQKNYFRYAFLNLLVKWYQRYHI 682 Query: 668 SKGLDVDIPEVC 679 PE Sbjct: 683 PTMRLFPTPEAI 694 >gi|22595776|gb|AAN02808.1| putative NTPase [lumpy skin disease virus] Length = 786 Score = 108 bits (268), Expect = 5e-21, Method: Composition-based stats. Identities = 54/295 (18%), Positives = 101/295 (34%), Gaps = 45/295 (15%) Query: 423 DSSSRFLGEQDGILDLETGQKVKP--TKELYITKSTGTPFV-------EGEPSQEFLDLV 473 D+ L ++G+LD+ +G+ K +K+ T STG + + ++ +++ Sbjct: 407 DTYPFMLPFKNGVLDICSGKFYKGAESKKFICTVSTGFNLDIEQYLNEDSQEMKDLNNII 466 Query: 474 SGYFE----SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529 + ++E + + R + L G K G +GKST L++ + G + Sbjct: 467 NDIQPLTEENKENRELYERTLSSCLCGSTKQ-CLTFFFGETATGKSTTKKLLQSSIGELF 525 Query: 530 VINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE-----NDEINAAKIKQMTGG 584 + + NP + + R V SE + + +I A IK++T Sbjct: 526 IETGQTILTD----IIDKGPNPFISNMHLKRSVFCSELPDFSCSGSKKIKADNIKKLT-E 580 Query: 585 DCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI-------- 636 C+ R + N + I N D+A RR ++ F Sbjct: 581 PCIVGRPCFSNRIHN-KNHASIIIDTNYKPVFDKVDNALMRRIALVKFRTHFSQYSNSDS 639 Query: 637 ----------ANRDASFAQKLETKY-TLEAKKWFLKGVKAY-ISKGLDVDIPEVC 679 D + K++ KY +K + Y I PE Sbjct: 640 VKNNAAYDDVKPLDENLDMKIQKKYFRYAFLNLLVKWYQKYHIPTMRLFPTPEAI 694 >gi|301134606|gb|ADK63720.1| m80R [Myxoma virus] Length = 786 Score = 108 bits (268), Expect = 5e-21, Method: Composition-based stats. Identities = 55/318 (17%), Positives = 104/318 (32%), Gaps = 47/318 (14%) Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP--TKELYITKSTG 457 + + ++ + +T D L ++G+LD+ G +K+ T STG Sbjct: 386 PRKRKVIENNLKDMLVDVTET--DVHPCILPFRNGVLDISNGTFYTGHDSKDFICTVSTG 443 Query: 458 TP-------FVEGEPSQEFLDLVSGYFE----SEEVMDYFTRCVGMALLGGNKAQRFIHI 506 + E +E + +++ +++ + + R + L G K Sbjct: 444 FNLNMEKFLDNDSEEMKELVSIINDIQPLTEENKQNRELYERTLASCLCGTTKQ-CITFF 502 Query: 507 RGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISE 566 G +GKST L+ A G+ ++ + NP + + R V SE Sbjct: 503 FGETATGKSTTKKLLHSAIGSLFIETGQTILTE----VMDKGPNPFIANMHLKRSVFCSE 558 Query: 567 TNE-----NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDD 621 + + I A IK++T C+ R + N + + I N D+ Sbjct: 559 LPDFACSTSKRIRADNIKKLT-EPCIVGRQCFSNRINN-KNHASIIIDTNYKPVFDRVDN 616 Query: 622 AWWRRYIVIPFDKPIANR------------------DASFAQKLETK-YTLEAKKWFLKG 662 A RR ++ F A D + K++ Y ++ Sbjct: 617 ALMRRISLVRFRTHFAQTATNKEMLNKAAYDDVKPLDETLDMKIQKNYYRYAFLNLLVQW 676 Query: 663 VKAYISKGLD-VDIPEVC 679 + Y L PE Sbjct: 677 YQKYHVPHLKLFSTPENV 694 >gi|9633716|ref|NP_051794.1| m80R [Myxoma virus] gi|6523935|gb|AAF14968.1|AF170726_84 m80R [Myxoma virus] gi|170664546|gb|ACB28703.1| m80R [Myxoma virus] gi|170664719|gb|ACB28875.1| m80R [recombinant virus 6918VP60-T2] Length = 786 Score = 108 bits (268), Expect = 5e-21, Method: Composition-based stats. Identities = 55/318 (17%), Positives = 104/318 (32%), Gaps = 47/318 (14%) Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP--TKELYITKSTG 457 + + ++ + +T D L ++G+LD+ G +K+ T STG Sbjct: 386 PRKRKVIENNLKDMLVDVTET--DVHPCILPFRNGVLDISNGTFYTGHDSKDFICTVSTG 443 Query: 458 TP-------FVEGEPSQEFLDLVSGYFE----SEEVMDYFTRCVGMALLGGNKAQRFIHI 506 + E +E + +++ +++ + + R + L G K Sbjct: 444 FNLNMEKFLDNDSEEMKELVSIINDIQPLTEENKQNRELYERTLASCLCGTTKQ-CITFF 502 Query: 507 RGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISE 566 G +GKST L+ A G+ ++ + NP + + R V SE Sbjct: 503 FGETATGKSTTKKLLHSAIGSLFIETGQTILTE----VMDKGPNPFIANMHLKRSVFCSE 558 Query: 567 TNE-----NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDD 621 + + I A IK++T C+ R + N + + I N D+ Sbjct: 559 LPDFACSTSKRIRADNIKKLT-EPCIVGRQCFSNRINN-KNHASIIIDTNYKPVFDRVDN 616 Query: 622 AWWRRYIVIPFDKPIANR------------------DASFAQKLETK-YTLEAKKWFLKG 662 A RR ++ F A D + K++ Y ++ Sbjct: 617 ALMRRISLVRFRTHFAQTATNKEMLNKAAYDDVKPLDETLDMKIQKNYYRYAFLNLLVQW 676 Query: 663 VKAYISKGLD-VDIPEVC 679 + Y L PE Sbjct: 677 YQKYHVPHLKLFSTPENV 694 >gi|40556020|ref|NP_955105.1| CNPV082 NTPase, DNA replication [Canarypox virus] gi|40233845|gb|AAR83428.1| CNPV082 NTPase, DNA replication [Canarypox virus] Length = 794 Score = 107 bits (267), Expect = 6e-21, Method: Composition-based stats. Identities = 47/231 (20%), Positives = 81/231 (35%), Gaps = 22/231 (9%) Query: 423 DSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVEGEPSQEFLDLVSGYFES- 479 D L +G+ D++ + K T STG + + E ++ +S + Sbjct: 410 DIYPEKLQFTNGVYDIKDSVFYQGNDAKNFVCTVSTGYKYEDKEDINGVIEELSKILDDI 469 Query: 480 -------EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532 E + + + + L+G K G +GKST L+K N ++ Sbjct: 470 QPKTKENSENRELYEQILSSCLMGTTKQ-CIFFFYGETATGKSTTKKLLKSVMHNMFLET 528 Query: 533 AEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE-----NDEINAAKIKQMTGGDCM 587 + Q NP + + R V SE + + +I + IK++T C+ Sbjct: 529 GQVILTEQ----MDKGPNPFIANMHLKRAVFCSELPDFSCNTSKKIRSDNIKKLT-EPCI 583 Query: 588 TARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN 638 R Y N + T I N D+A RR ++ F N Sbjct: 584 VGRPCYSNKINN-RNHATIIIDTNYKPVFDKVDNAIMRRIALVNFKTHFTN 633 >gi|12085066|ref|NP_073468.1| 83R protein [Yaba-like disease virus] gi|157939706|ref|YP_001497078.1| NTPase [Tanapox virus] gi|12056242|emb|CAC21321.1| 83R protein [Yaba-like disease virus] gi|146746422|gb|ABQ43558.1| NTPase [Tanapox virus] gi|146746578|gb|ABQ43713.1| NTPase [Tanapox virus] Length = 786 Score = 107 bits (267), Expect = 7e-21, Method: Composition-based stats. Identities = 57/381 (14%), Positives = 114/381 (29%), Gaps = 67/381 (17%) Query: 337 DKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNV 396 ++ + +W K + L E + R++ V Sbjct: 343 ERGDHIVWIKNSWKFNNEEPVITKLVLNMKDQLPSEYTPD-----------ILCPRKRKV 391 Query: 397 EENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKST 456 EN+ ++E D+ L ++G+LD+ +G+ + + Sbjct: 392 IENNLKDMLVDTVET-----------DTYPHILPFKNGVLDITSGKFYHGEESKKFICTA 440 Query: 457 GTPFVEGEP---------SQEFLDLVSGYFE----SEEVMDYFTRCVGMALLGGNKAQRF 503 T F +E ++ + + + + R + L G K Sbjct: 441 STDFNFEMDKFLNDTSIEMKELECIIDDIQPKTCENLKNRELYERTLSSCLCGSTKQ-CI 499 Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVI 563 G +GKST L++ A G+ ++ + NP + + R V Sbjct: 500 TFFFGETATGKSTTKRLLQSAIGDLFIETGQTILTD----LMDKGPNPFISNMHLKRSVF 555 Query: 564 ISETNE-----NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRN 618 SE + + +I A +K++T C+ R + N + + I N Sbjct: 556 CSELPDFACSGSKKIRADNVKKLT-EPCIVGRSCFSNKINN-RNHASIIIDTNYKPIFDR 613 Query: 619 PDDAWWRRYIVIPFDKPIANR------------------DASFAQKLETK-YTLEAKKWF 659 D A RR ++ F + D + K++ K Y Sbjct: 614 VDCALMRRVSLVKFRTHFSQPSSAEAAKSNSAYDDVKPLDENLDMKIQKKYYRFAFLNML 673 Query: 660 LKGVKAYISKGLD-VDIPEVC 679 +K + Y + P+ Sbjct: 674 VKWYQKYHVPTMRLFPTPDAV 694 >gi|295696541|ref|YP_003589779.1| Bifunctional DNA primase/polymerase [Bacillus tusciae DSM 2912] gi|295412143|gb|ADG06635.1| Bifunctional DNA primase/polymerase [Bacillus tusciae DSM 2912] Length = 269 Score = 107 bits (267), Expect = 7e-21, Method: Composition-based stats. Identities = 33/216 (15%), Positives = 63/216 (29%), Gaps = 19/216 (8%) Query: 12 QAIHNGFKLIPLRLGDKRP-QRLGKWEEQLLSSEKIDKL----PACGFGFVCGVGEQPLY 66 I IPL KRP + ++ + + E++ + P C + V G + Sbjct: 20 AYIKRDLSTIPLEPKGKRPLIKWEPFQHRRPTPEQVMRWAQEHPGCNWAIVTGAVS-GVV 78 Query: 67 AFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHL 126 D+D + A K G P+V+ G+ + FR ++ + Sbjct: 79 VLDLD--SPEAAQEIKQRGVEDVG-PVVKTGK--GWHLYFRHPGHPVQN---AVKLLPGV 130 Query: 127 DILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVK 186 D+ G G Y A + Y W ++E E++ + + P Sbjct: 131 DVRGDGGYVAAPPSVHPSGAVYRWAKGRSILEIE-----PPPLPEWVEELLNQPQEPAGG 185 Query: 187 DKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFY 222 + E + + Sbjct: 186 VSIQLEGIGDDIERIALGVGQGERNQATARLAGYLF 221 >gi|21492536|ref|NP_659655.1| NTPase; DNA replication [Sheeppox virus] Length = 786 Score = 107 bits (267), Expect = 7e-21, Method: Composition-based stats. Identities = 63/372 (16%), Positives = 123/372 (33%), Gaps = 53/372 (14%) Query: 351 ITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQN-----VEENSKAKST 405 I S + L + V + + N + N + + + K K Sbjct: 333 IMDSNVIHLTERGDHVVWIKNSWKFNTDEPLITKLILNMKDQLPSEYIPDILCPRKRKVI 392 Query: 406 AQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP--TKELYITKSTGTPFV-- 461 +L+ + +I + D+ L ++G+LD+ +G+ K +K+ T STG Sbjct: 393 ENNLKDMLVDTIET---DTYPFMLPFKNGVLDICSGKFYKGAESKKFICTVSTGFNLDIE 449 Query: 462 -----EGEPSQEFLDLVSGYFE----SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGS 512 + + ++ ++++ ++E + + R + L G K G + Sbjct: 450 KYLNEDSQEMKDLNNIINDIQPLTEENKENRELYERTLSSCLCGSTKQ-CLTFFFGETAT 508 Query: 513 GKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE--- 569 GKST L++ + G ++ + NP + + R V SE + Sbjct: 509 GKSTTKKLLQSSIGELFIETGQTILTD----IIDKGPNPFISNMHLKRSVFCSELPDFSC 564 Query: 570 --NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627 + +I A IK++T C+ R + N + I N D+A RR Sbjct: 565 SGSKKIKADNIKKLT-EPCIVGRPCFSNRIHN-KNHASIIIDTNYKPVFDKVDNALMRRI 622 Query: 628 IVIPFDKPI------------------ANRDASFAQKLETKY-TLEAKKWFLKGVKAY-I 667 ++ F D + K++ Y +K + Y I Sbjct: 623 ALVKFRTHFSQYSNSDSVKNNAAYDDVKPLDENLDMKIQKNYFRYAFLNLLVKWYQKYHI 682 Query: 668 SKGLDVDIPEVC 679 PE Sbjct: 683 PTMRLFPTPEAI 694 >gi|44971462|gb|AAS49812.1| RPXV099 [Rabbitpox virus] Length = 785 Score = 107 bits (267), Expect = 7e-21, Method: Composition-based stats. Identities = 60/358 (16%), Positives = 122/358 (34%), Gaps = 51/358 (14%) Query: 350 KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR-----QNVEENSKAKS 404 +I + L + + ++ + N++ + + ++ + K K+ Sbjct: 332 RILDTNSVLLTERGDHIVWINNSWKFNSEEPLITKLILSIRHQLPKEYSSELLCPRKRKT 391 Query: 405 TAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVE 462 ++ + S+ + D+ L ++G+LDL G K+ T STG F + Sbjct: 392 VEANIRDMLVDSVET---DTYPDKLPFKNGVLDLVDGMFYSGDDAKKYMCTVSTGFKFDD 448 Query: 463 G------EPSQEFLDLVSGYFE----SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGS 512 +E +++++ +++ + + + + L G K G + Sbjct: 449 TKFVEDSPEMEELMNIINDIQPLTDENKKNRELYEKTLSSCLCGATK-GCLTFFFGETAT 507 Query: 513 GKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE--- 569 GKST L+K A G+ +V + NP + + R V SE + Sbjct: 508 GKSTTKRLLKSAIGDLFVETGQTILTD----VLDKGPNPFIANMHLKRSVFCSELPDFAC 563 Query: 570 --NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627 + +I + IK++T C+ R + N + T I N D+A RR Sbjct: 564 SGSKKIRSDNIKKLT-EPCVIGRPCFSNKINN-RNHATIIIDTNYKPVFDRIDNALMRRI 621 Query: 628 IVIPFDKPIANR------------------DASFAQKLETK-YTLEAKKWFLKGVKAY 666 V+ F + D K++ Y +K + Y Sbjct: 622 AVVRFRTHFSQPSGREAAENNDAYDKVKLLDEGLDGKIQNNRYRFAFLYLLVKWYRKY 679 >gi|225194752|gb|ACN81884.1| DNA-dependent NTPase [Raccoonpox virus] Length = 785 Score = 107 bits (267), Expect = 7e-21, Method: Composition-based stats. Identities = 62/358 (17%), Positives = 122/358 (34%), Gaps = 51/358 (14%) Query: 350 KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR-----QNVEENSKAKS 404 +I + L + + ++ + N++ + + ++ + K K+ Sbjct: 332 RILDTNSVLLTERGDHIVWINNSWKFNSEEPLITKLILSIRHQLPKEYSSELLCPRKRKT 391 Query: 405 TAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVE 462 ++ + S+ + D+ L ++G+LDL G K+ T STG F + Sbjct: 392 VEANIRDMLVDSVET---DTYPDKLPFKNGVLDLVDGMFYSGDDAKKYTCTISTGFKFDD 448 Query: 463 G------EPSQEFLDLVSGYFE----SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGS 512 +E L++++ +++ + + + + L G K G + Sbjct: 449 KKFVEDSPEMEELLNIINDIQPLTEENKKNRELYEKTLSSCLCGATK-GCLTFFFGETAT 507 Query: 513 GKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE--- 569 GKST L+K A G+ +V + NP + + R V SE + Sbjct: 508 GKSTTKRLLKSAIGDLFVETGQTILTD----VLDKGPNPFIANMHLKRSVFCSELPDFAC 563 Query: 570 --NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627 + +I + IK++T C+ R + N + T I N D+A RR Sbjct: 564 SGSKKIRSDNIKKLT-EPCVIGRPCFSNKINN-RNHATIIIDTNYKPVFDRIDNALMRRI 621 Query: 628 IVIPFDKPIANR------------------DASFAQKLETK-YTLEAKKWFLKGVKAY 666 V+ F + D K++ Y +K K Y Sbjct: 622 AVVRFRTHFSQPSGREAAENNDAYDNVKLLDEGLDSKIQNNRYRFAFLYLLVKWYKQY 679 >gi|15150522|ref|NP_150517.1| LSDV083 putative NTPase [Lumpy skin disease virus NI-2490] gi|15149094|gb|AAK85044.1| LSDV083 putative NTPase [Lumpy skin disease virus NI-2490] gi|22595618|gb|AAN02651.1| putative NTPase [Lumpy skin disease virus NW-LW] Length = 786 Score = 107 bits (267), Expect = 7e-21, Method: Composition-based stats. Identities = 53/295 (17%), Positives = 100/295 (33%), Gaps = 45/295 (15%) Query: 423 DSSSRFLGEQDGILDLETGQKVKP--TKELYITKSTGTPFV-------EGEPSQEFLDLV 473 D+ L ++G+LD+ +G+ K +K+ T STG + + ++ +++ Sbjct: 407 DTYPFMLPFKNGVLDICSGKFYKGAESKKFICTVSTGFNLDIEQYLNEDSQEMKDLNNII 466 Query: 474 SGYFE----SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529 + ++E + + R + L G K G +GKST L++ + G + Sbjct: 467 NDIQPLTEENKENRELYERTLSSCLCGSTKQ-CLTFFFGETATGKSTTKKLLQSSIGELF 525 Query: 530 VINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE-----NDEINAAKIKQMTGG 584 + + NP + + R V SE + + +I A IK++T Sbjct: 526 IETGQTILTD----IIDKGPNPFISNMHLKRSVFCSELPDFSCSGSKKIKADNIKKLT-E 580 Query: 585 DCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI-------- 636 C+ R + N + I N D+A RR ++ F Sbjct: 581 PCIVGRPCFSNRIHN-KNHASIIIDTNYKPVFDKVDNALMRRIALVKFRTHFSQYSNSDS 639 Query: 637 ----------ANRDASFAQKLETKY-TLEAKKWFLKGVKAY-ISKGLDVDIPEVC 679 D + K++ Y +K + Y I PE Sbjct: 640 VKNNAAYDDVKPLDENLDMKIQKNYFRYAFLNLLVKWYQKYHIPTMRLFPTPEAI 694 >gi|225194734|gb|ACN81875.1| DNA-dependent NTPase [Volepox virus] Length = 785 Score = 107 bits (266), Expect = 9e-21, Method: Composition-based stats. Identities = 61/358 (17%), Positives = 122/358 (34%), Gaps = 51/358 (14%) Query: 350 KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR-----QNVEENSKAKS 404 +I + L + + ++ + NN+ + + ++ + K K+ Sbjct: 332 RILDTNSVLLTERGDHIVWINNSWKFNNEEPLITKLILSIRHQLPKEYSSELLCPRKRKT 391 Query: 405 TAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVE 462 ++ + S+ + D+ L ++G+LDL G K+ T STG F + Sbjct: 392 VEANIRDMLVDSVET---DTYPDKLPFKNGVLDLVDGMFYSGDEAKKYTCTVSTGFRFDD 448 Query: 463 ------GEPSQEFLDLVSGYFE----SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGS 512 +E +++++ +++ + + + + L G K G + Sbjct: 449 VKFIEGSPEMEELVNIINDIQPLTDENKKNRELYEKTLSSCLCGATK-GCLTFFFGETAT 507 Query: 513 GKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE--- 569 GKST L+K A G+ +V + NP + + R V SE + Sbjct: 508 GKSTTKRLLKSAIGDLFVETGQTILTD----VLDKGPNPFIANMHLKRSVFCSELPDFAC 563 Query: 570 --NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627 + +I + IK++T C+ R + N + T I N D+A RR Sbjct: 564 SGSKKIRSDNIKKLT-EPCVIGRPCFSNKINN-RNHATIIIDTNYKPVFDRIDNALMRRI 621 Query: 628 IVIPFDKPIANR------------------DASFAQKLETK-YTLEAKKWFLKGVKAY 666 V+ F + D K++ Y +K + Y Sbjct: 622 AVVRFRTHFSQPSGREAAENNDAYDKVKLLDEGLDNKIQNNRYRFAFLYLLVKWYRKY 679 >gi|147677729|ref|YP_001211944.1| hypothetical protein PTH_1394 [Pelotomaculum thermopropionicum SI] gi|146273826|dbj|BAF59575.1| hypothetical protein [Pelotomaculum thermopropionicum SI] Length = 645 Score = 107 bits (266), Expect = 9e-21, Method: Composition-based stats. Identities = 34/210 (16%), Positives = 69/210 (32%), Gaps = 33/210 (15%) Query: 1 MPVMQWKEQAKQAIHNGFKLIPL----------------RLGDKRP--QRLGKWEEQLLS 42 M ++ I F +IPL + G K P ++ + + Sbjct: 1 MNRSKYSVPQNDDIFQKFSVIPLHSLKNGKCTCGKNDCTKPG-KHPCIPEWRVYQRRRPT 59 Query: 43 SEKIDKL----PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQ 98 +++ + P C + V G + D+D + + + + + T +VR G+ Sbjct: 60 RDEVTQWRGKYPGCNWAVVTGKVS-EVVVLDMDGPEGEASLR----GKHIPPTWMVRTGK 114 Query: 99 KPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFK 158 I F+ ++ + +DI G G Y VA + K+Y W Sbjct: 115 --GRHIYFQWPGFPVECRTGI---LPGVDIRGDGGYVVAPGSVHVSGKKYGWVDGLSPAD 169 Query: 159 VEDTPLLSEEDVEYLFKFFQEITVPLVKDK 188 + + VE L + + + + Sbjct: 170 MPEPAEAPAWLVELLKRPGGNSSSKIDPVR 199 >gi|56713483|gb|AAW23523.1| putative NTPase [Vaccinia virus] gi|56713767|gb|AAW23805.1| putative NTPase [Vaccinia virus] Length = 785 Score = 107 bits (266), Expect = 9e-21, Method: Composition-based stats. Identities = 60/358 (16%), Positives = 122/358 (34%), Gaps = 51/358 (14%) Query: 350 KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR-----QNVEENSKAKS 404 +I + L + + ++ + N++ + + ++ + K K+ Sbjct: 332 RILDTNSVLLTERGDHIVWINNSWKFNSEEPLITKLILSIRHQLPKEYSSELLCPRKRKT 391 Query: 405 TAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVE 462 ++ + S+ + D+ L ++G+LDL G K+ T STG F + Sbjct: 392 VEANIRDMLVDSVET---DTYPDKLPFKNGVLDLVDGMFYSGDDAKKYTCTVSTGFKFDD 448 Query: 463 G------EPSQEFLDLVSGYFE----SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGS 512 +E +++++ +++ + + + + L G K G + Sbjct: 449 TKFVEDSPEMEELMNIINDIQPLTDENKKNRELYEKTLSSCLCGATK-GCLTFFFGETAT 507 Query: 513 GKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE--- 569 GKST L+K A G+ +V + NP + + R V SE + Sbjct: 508 GKSTTKRLLKSAIGDLFVETGQTILTD----VLDKGPNPFIANMHLKRSVFCSELPDFAC 563 Query: 570 --NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627 + +I + IK++T C+ R + N + T I N D+A RR Sbjct: 564 SGSKKIRSDNIKKLT-EPCVIGRPCFSNKINN-RNHATIIIDTNYKPVFDRIDNALMRRI 621 Query: 628 IVIPFDKPIANR------------------DASFAQKLETK-YTLEAKKWFLKGVKAY 666 V+ F + D K++ Y +K + Y Sbjct: 622 AVVRFRTHFSQPSGREAAENNDAYDKVKLLDEGLDGKIQNNRYRFAFLYLLVKWYRKY 679 >gi|66275907|ref|YP_232992.1| NTPase [Vaccinia virus] gi|137602|sp|P04305|VD05_VACCV RecName: Full=Protein D5 gi|335647|gb|AAA48259.1| ORF5 cds [Vaccinia virus] gi|893340|gb|AAA69629.1| unknown protein [Vaccinia virus] gi|29692216|gb|AAO89389.1| NTPase interacts with A20R [Vaccinia virus WR] gi|88854163|gb|ABD52581.1| nucleic acid-independent nucleoside triphosphatase [Vaccinia virus] Length = 785 Score = 107 bits (266), Expect = 9e-21, Method: Composition-based stats. Identities = 60/358 (16%), Positives = 122/358 (34%), Gaps = 51/358 (14%) Query: 350 KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR-----QNVEENSKAKS 404 +I + L + + ++ + N++ + + ++ + K K+ Sbjct: 332 RILDTNSVLLTERGDHIVWINNSWKFNSEEPLITKLILSIRHQLPKEYSSELLCPRKRKT 391 Query: 405 TAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVE 462 ++ + S+ + D+ L ++G+LDL G K+ T STG F + Sbjct: 392 VEANIRDMLVDSVET---DTYPDKLPFKNGVLDLVDGMFYSGDDAKKYTCTVSTGFKFDD 448 Query: 463 G------EPSQEFLDLVSGYFE----SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGS 512 +E +++++ +++ + + + + L G K G + Sbjct: 449 TKFVEDSPEMEELMNIINDIQPLTDENKKNRELYEKTLSSCLCGATK-GCLTFFFGETAT 507 Query: 513 GKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE--- 569 GKST L+K A G+ +V + NP + + R V SE + Sbjct: 508 GKSTTKRLLKSAIGDLFVETGQTILTD----VLDKGPNPFIANMHLKRSVFCSELPDFAC 563 Query: 570 --NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627 + +I + IK++T C+ R + N + T I N D+A RR Sbjct: 564 SGSKKIRSDNIKKLT-EPCVIGRPCFSNKINN-RNHATIIIDTNYKPVFDRIDNALMRRI 621 Query: 628 IVIPFDKPIANR------------------DASFAQKLETK-YTLEAKKWFLKGVKAY 666 V+ F + D K++ Y +K + Y Sbjct: 622 AVVRFRTHFSQPSGREAAENNDAYDKVKLLDEGLDGKIQNNRYRFAFLYLLVKWYRKY 679 >gi|37551555|gb|AAQ93207.1| NTPase [Vaccinia virus] gi|38348977|gb|AAR17953.1| NTPase [Vaccinia virus] gi|88900728|gb|ABD57640.1| VACV106 [Vaccinia virus] gi|90819770|gb|ABD98580.1| VACV-DUKE-118 [Vaccinia virus] Length = 785 Score = 107 bits (266), Expect = 1e-20, Method: Composition-based stats. Identities = 60/358 (16%), Positives = 122/358 (34%), Gaps = 51/358 (14%) Query: 350 KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR-----QNVEENSKAKS 404 +I + L + + ++ + N++ + + ++ + K K+ Sbjct: 332 RILDTNSVLLTERGDHIVWINNSWKFNSEEPLITKLILSIRHQLPKEYSSELLCPRKRKT 391 Query: 405 TAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVE 462 ++ + S+ + D+ L ++G+LDL G K+ T STG F + Sbjct: 392 VEANIRDMLVDSVET---DTYPDKLPFKNGVLDLVDGMFYSGDNAKKYTCTVSTGFKFDD 448 Query: 463 G------EPSQEFLDLVSGYFE----SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGS 512 +E +++++ +++ + + + + L G K G + Sbjct: 449 TKFVEDSPEMEELMNIINDIQPLTDENKKNRELYEKTLSSCLCGATK-GCLTFFFGETAT 507 Query: 513 GKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE--- 569 GKST L+K A G+ +V + NP + + R V SE + Sbjct: 508 GKSTTKRLLKSAIGDLFVETGQTILTD----VLDKGPNPFIANMHLKRSVFCSELPDFAC 563 Query: 570 --NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627 + +I + IK++T C+ R + N + T I N D+A RR Sbjct: 564 SGSKKIRSDNIKKLT-EPCVIGRPCFSNKINN-RNHATIIIDTNYKPVFDRIDNALMRRI 621 Query: 628 IVIPFDKPIANR------------------DASFAQKLETK-YTLEAKKWFLKGVKAY 666 V+ F + D K++ Y +K + Y Sbjct: 622 AVVRFRTHFSQPSGREAAENNDAYDKVKLLDEGLDGKIQNNRYRFAFLYLLVKWYRKY 679 >gi|167412610|gb|ABZ80044.1| NTPase interacts with A20R [Vaccinia virus GLV-1h68] Length = 785 Score = 107 bits (266), Expect = 1e-20, Method: Composition-based stats. Identities = 61/358 (17%), Positives = 122/358 (34%), Gaps = 51/358 (14%) Query: 350 KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR-----QNVEENSKAKS 404 +I + L + + ++ + N++ + + ++ + K K+ Sbjct: 332 RILDTNSVLLTERGDHIVWINNSWKFNSEEPLITKLILSIRHQLPKEYSSELLCPRKRKT 391 Query: 405 TAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVE 462 ++ + S+ + D+ L ++G+LDL G K+ T STG F + Sbjct: 392 VEANIRDMLVDSVET---DTYPDKLPFKNGVLDLVDGMFYSGDDAKKYTCTVSTGFKFDD 448 Query: 463 G------EPSQEFLDLVSGYFE----SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGS 512 +E +++++ +++ + + + + L G K G + Sbjct: 449 TKFVEDSPEMEELMNIINDIQPLTDENKKNRELYEKTLSSCLCGATK-GCLTFFFGETAT 507 Query: 513 GKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE--- 569 GKST L+K A G+ +V + NP + + R V SE + Sbjct: 508 GKSTTKRLLKSAIGDLFVETGQTILTD----VLDKGPNPFIANMHLKRSVFCSELPDFAC 563 Query: 570 --NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627 + +I + IK++T C+ R + N + T I N D+A RR Sbjct: 564 SGSKKIRSDNIKKLT-EPCVIGRPCFSNKINN-RNHATIIIDTNYKPVFDRIDNALMRRI 621 Query: 628 IVIPFDKPIANR------------------DASFAQKLETK-YTLEAKKWFLKGVKAY 666 V+ F + D K++ Y +K K Y Sbjct: 622 AVVRFRTHFSQPSGREAAENNDAYDKVKLLDEGLDGKIQNNIYRFAFLYLLVKWYKKY 679 >gi|30519484|emb|CAD90659.1| E5R protein [Cowpox virus] Length = 785 Score = 107 bits (266), Expect = 1e-20, Method: Composition-based stats. Identities = 60/358 (16%), Positives = 122/358 (34%), Gaps = 51/358 (14%) Query: 350 KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR-----QNVEENSKAKS 404 +I + L + + ++ + N++ + + ++ + K K+ Sbjct: 332 RILDTNSVLLTERGDHIVWINNSWKFNSEEPLITKLILSIRHQLPKEYSSELLCPRKRKT 391 Query: 405 TAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVE 462 ++ + S+ + D+ L ++G+LDL G K+ T STG F + Sbjct: 392 VEANIRDMLVDSVET---DTYPDKLPFKNGVLDLVDGMFYSGDDAKKYTCTVSTGFKFDD 448 Query: 463 G------EPSQEFLDLVSGYFE----SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGS 512 +E +++++ +++ + + + + L G K G + Sbjct: 449 TKFVEDSPEMEELMNIINDIQPLTDENKKNRELYEKTLSSCLCGATK-GCLTFFFGETAT 507 Query: 513 GKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE--- 569 GKST L+K A G+ +V + NP + + R V SE + Sbjct: 508 GKSTTKRLLKSAIGDLFVETGQTILTD----VLDKGPNPFIANMHLKRSVFCSELPDFAC 563 Query: 570 --NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627 + +I + IK++T C+ R + N + T I N D+A RR Sbjct: 564 SGSKKIRSDNIKKLT-EPCVIGRPCFSNKINN-RNHATIIIDTNYKPVFDRIDNALMRRI 621 Query: 628 IVIPFDKPIANR------------------DASFAQKLETK-YTLEAKKWFLKGVKAY 666 V+ F + D K++ Y +K + Y Sbjct: 622 AVVRFRTHFSQPSGREAAENNDAYDKVKLLDEGLDGKIQNNRYRFAFLYLLVKWYRKY 679 >gi|320166803|gb|EFW43702.1| predicted protein [Capsaspora owczarzaki ATCC 30864] Length = 763 Score = 107 bits (266), Expect = 1e-20, Method: Composition-based stats. Identities = 64/472 (13%), Positives = 141/472 (29%), Gaps = 55/472 (11%) Query: 167 EEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSH 226 + + + +E ++ ++T REI L + G Sbjct: 280 PLQCDAIDEALEEQERSNKAAEERRKLQ---LATPVNEHTVREIREILMEHLGPEHYGQR 336 Query: 227 DEWIPVVMAVHHETRGSSKGKEIARRWSKQG--STYDEENFNYKWDTFDFEEIGDTAKK- 283 W +V AV G ++AR +S + YD +F W++ + Sbjct: 337 KHWFGIVAAVK--CVLGEAGYDLAREFSARAGDPQYDN-DFPKNWESISPDHNWSMESLY 393 Query: 284 ----------RSTFTSLFYHHGKLIPKGLLASRFS-------DAYNKAMFSIYKKGHFLY 326 R + + + DA + ++ Sbjct: 394 KYVKGGSSALRCNQDFRIDSDEEEENEKPMQFSEDEPEFGNEDADALILKDLFAGNVISV 453 Query: 327 TAD-TKAWYKKDKNNVYIWSLTLDKITASI-MNFLVSMKEDVFDLSEEPEDN--NKNSKS 382 ++ +Y + V + T + + + + + + + ++ + + K + Sbjct: 454 SSKSDDNFYIYNPRKVLWETATNADMNDLVGVELKKYLAKRIEKMEQQIQSSVSQKKKEL 513 Query: 383 PRFWFNTDYRRQNVEEN------------------SKAKSTAQSLEAGSIFSITSDLLDS 424 + + V+ N A L++ + + LD Sbjct: 514 SPKLKKSAVKAFGVDRNLNSTRTQLKSAYKQAGGSRHANGIIVKLKSKLLDASFKAKLDK 573 Query: 425 SSRFLGEQ-DGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEV 482 L + +L+L TG + +E Y T + + G S E+ Sbjct: 574 DPYSLAIAGNKMLNLLTGVTRQRVREDYCTFALDVDYTPGSDLSIAQSFFSDVMCGDAEM 633 Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542 ++YF R +G LLG N A G G +GKS ++ +++ Q+ + + Sbjct: 634 IEYFQRVMGYCLLGNNAAHLMFFFLGRGSNGKSLILQILEAILKGQFFTWMVQGIMKAGK 693 Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594 E + + + ++ + I A +K+ GD + Sbjct: 694 KFEHQMPK---LVAEVTTAMRYADDPVHQWIAAQVVKK--AGDWYVDEEKHQ 740 >gi|160857992|emb|CAM58280.1| DNA-dependent ATPase [Vaccinia virus Ankara] Length = 785 Score = 107 bits (266), Expect = 1e-20, Method: Composition-based stats. Identities = 60/358 (16%), Positives = 122/358 (34%), Gaps = 51/358 (14%) Query: 350 KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR-----QNVEENSKAKS 404 +I + L + + ++ + N++ + + ++ + K K+ Sbjct: 332 RILDTNSVLLTERGDHIVWINNSWKFNSEEPLITKLILSIRHQLPKEYSSELLCPRKRKT 391 Query: 405 TAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVE 462 ++ + S+ + D+ L ++G+LDL G K+ T STG F + Sbjct: 392 VEANIRDMLVDSVET---DTYPDKLPFKNGVLDLVDGMFYSGDDAKKYTCTVSTGFKFDD 448 Query: 463 G------EPSQEFLDLVSGYFE----SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGS 512 +E +++++ +++ + + + + L G K G + Sbjct: 449 TKFVEDSPEMEELMNIINDIQPLTDENKKNRELYEKTLSSCLCGATK-GCLTFFFGETAT 507 Query: 513 GKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE--- 569 GKST L+K A G+ +V + NP + + R V SE + Sbjct: 508 GKSTTKRLLKSAIGDLFVETGQTILTD----VLDKGPNPFIANMHLKRSVFCSELPDFAC 563 Query: 570 --NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627 + +I + IK++T C+ R + N + T I N D+A RR Sbjct: 564 SGSKKIRSDNIKKLT-EPCVIGRPCFSNKINN-RNHATIIIDTNYKPVFDRIDNALMRRI 621 Query: 628 IVIPFDKPIANR------------------DASFAQKLETK-YTLEAKKWFLKGVKAY 666 V+ F + D K++ Y +K + Y Sbjct: 622 AVVRFRTHFSQPSGREAAENNDAYDKVKLLDEGLDGKIQNNRYRFAFLYLLVKWYRKY 679 >gi|111184297|gb|ABH08217.1| HSPV111 [Horsepox virus] Length = 785 Score = 107 bits (266), Expect = 1e-20, Method: Composition-based stats. Identities = 60/358 (16%), Positives = 122/358 (34%), Gaps = 51/358 (14%) Query: 350 KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR-----QNVEENSKAKS 404 +I + L + + ++ + N++ + + ++ + K K+ Sbjct: 332 RILDTNSVLLTERGDHIVWINNSWKFNSEEPLITKLILSIRHQLPKEYSSELLCPRKRKT 391 Query: 405 TAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVE 462 ++ + S+ + D+ L ++G+LDL G K+ T STG F + Sbjct: 392 VEANIRDMLVDSVET---DTYPDKLPFKNGVLDLVDGMFYSGDNAKKYTCTVSTGFKFDD 448 Query: 463 G------EPSQEFLDLVSGYFE----SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGS 512 +E +++++ +++ + + + + L G K G + Sbjct: 449 TKFVEDSPEMEELMNIINDIQPLTDENKKNRELYEKTLSSCLCGATK-GCLTFFFGETAT 507 Query: 513 GKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE--- 569 GKST L+K A G+ +V + NP + + R V SE + Sbjct: 508 GKSTTKRLLKSAIGDLFVETGQTILTD----VLDKGPNPFIANMHLKRSVFCSELPDFAC 563 Query: 570 --NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627 + +I + IK++T C+ R + N + T I N D+A RR Sbjct: 564 SGSKKIRSDNIKKLT-EPCVIGRPCFSNKINN-RNHATIIIDTNYKPVFDRIDNALMRRI 621 Query: 628 IVIPFDKPIANR------------------DASFAQKLETK-YTLEAKKWFLKGVKAY 666 V+ F + D K++ Y +K + Y Sbjct: 622 AVVRFRTHFSQPSGREAAENNDAYDKVKLLDEGLDGKIQNNRYRFAFLYLLVKWYRKY 679 >gi|113195289|ref|YP_717419.1| NTPase [Taterapox virus] gi|90660565|gb|ABD97678.1| NTPase [Taterapox virus] Length = 785 Score = 107 bits (266), Expect = 1e-20, Method: Composition-based stats. Identities = 60/358 (16%), Positives = 122/358 (34%), Gaps = 51/358 (14%) Query: 350 KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR-----QNVEENSKAKS 404 +I + L + + ++ + N++ + + ++ + K K+ Sbjct: 332 RILDTNSVLLTERGDHIVWINNSWKFNSEEPLITKLILSIRHQLPKEYSSELLCPRKRKT 391 Query: 405 TAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVE 462 ++ + S+ + D+ L ++G+LDL G K+ T STG F + Sbjct: 392 VEANIRDMLVDSVET---DTYPDKLPFKNGVLDLVDGMFYSGDDAKKYTCTVSTGFKFDD 448 Query: 463 G------EPSQEFLDLVSGYFE----SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGS 512 +E +++++ +++ + + + + L G K G + Sbjct: 449 TKFVEDSPEMEELMNIINDIQPLTDENKKNRELYEKTLSSCLCGATK-GCLTFFFGETAT 507 Query: 513 GKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE--- 569 GKST L+K A G+ +V + NP + + R V SE + Sbjct: 508 GKSTTKRLLKSAIGDLFVETGQTILTD----VLDKGPNPFIANMHLKRSVFCSELPDFAC 563 Query: 570 --NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627 + +I + IK++T C+ R + N + T I N D+A RR Sbjct: 564 SGSKKIRSDNIKKLT-EPCVIGRPCFSNKINN-RNHATIIIDTNYKPVFDRIDNALMRRI 621 Query: 628 IVIPFDKPIANR------------------DASFAQKLETK-YTLEAKKWFLKGVKAY 666 V+ F + D K++ Y +K + Y Sbjct: 622 AVVRFRTHFSQPSGREAAENNDAYDKVKLLDEGLDGKIQNNRYRFAFLYLLVKWYRKY 679 >gi|323098511|gb|ADX22749.1| NTPase [Monkeypox virus] gi|323098708|gb|ADX22945.1| NTPase [Monkeypox virus] Length = 785 Score = 106 bits (265), Expect = 1e-20, Method: Composition-based stats. Identities = 61/358 (17%), Positives = 122/358 (34%), Gaps = 51/358 (14%) Query: 350 KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR-----QNVEENSKAKS 404 +I + L + + ++ + N++ + + ++ + K K+ Sbjct: 332 RILDTNSVLLTERGDHIVWINNSWKFNSEEPLITKLILSIRHQLPKEYSSELLCPRKRKT 391 Query: 405 TAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVE 462 ++ + S+ + D+ L ++G+LDL G K+ T STG F + Sbjct: 392 VEANIRDMLVDSVET---DTYPDKLPFKNGVLDLVDGMFYSGDDAKKYTCTVSTGFKFDD 448 Query: 463 G------EPSQEFLDLVSGYFE----SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGS 512 +E +++++ +++ + + + + L G K G + Sbjct: 449 TKFVENSPEMEELMNIINDIQPLTDENKKNRELYEKTLSSCLCGATK-GCLTFFFGETAT 507 Query: 513 GKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE--- 569 GKST L+K A G+ +V + NP + + R V SE + Sbjct: 508 GKSTTKRLLKSAIGDLFVETGQTILTD----VLDKGPNPFIANMHLKRSVFCSELPDFAC 563 Query: 570 --NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627 + +I + IK++T C+ R + N + T I N D+A RR Sbjct: 564 SGSKKIRSDNIKKLT-EPCVIGRPCFSNKINN-RNHATIIIDTNYKPVFDRIDNALMRRI 621 Query: 628 IVIPFDKPIANR------------------DASFAQKLETK-YTLEAKKWFLKGVKAY 666 V+ F + D K++ Y +K K Y Sbjct: 622 AVVRFRTHFSQPSGREAAENNDAYDKVKLLDEGLDGKIQNNRYRFAFLYLLVKWYKKY 679 >gi|17975015|ref|NP_536529.1| E5R [Monkeypox virus Zaire-96-I-16] gi|17529882|gb|AAL40560.1|AF380138_102 E5R [Monkeypox virus Zaire-96-I-16] gi|68448979|gb|AAY97101.1| NTPase [Monkeypox virus] gi|68449181|gb|AAY97302.1| NTPase [Monkeypox virus] gi|300872725|gb|ADK39127.1| NTPase [Monkeypox virus] Length = 785 Score = 106 bits (265), Expect = 1e-20, Method: Composition-based stats. Identities = 61/358 (17%), Positives = 122/358 (34%), Gaps = 51/358 (14%) Query: 350 KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR-----QNVEENSKAKS 404 +I + L + + ++ + N++ + + ++ + K K+ Sbjct: 332 RILDTNSVLLTERGDHIVWINNSWKFNSEEPLITKLILSIRHQLPKEYSSELLCPRKRKT 391 Query: 405 TAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVE 462 ++ + S+ + D+ L ++G+LDL G K+ T STG F + Sbjct: 392 VEANIRDMLVDSVET---DTYPDKLPFKNGVLDLVDGMFYSGDDAKKYTCTVSTGFKFDD 448 Query: 463 G------EPSQEFLDLVSGYFE----SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGS 512 +E +++++ +++ + + + + L G K G + Sbjct: 449 TKFVENSPEMEELMNIINDIQPLTDENKKNRELYEKTLSSCLCGATK-GCLTFFFGETAT 507 Query: 513 GKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE--- 569 GKST L+K A G+ +V + NP + + R V SE + Sbjct: 508 GKSTTKRLLKSAIGDLFVETGQTILTD----VLDKGPNPFIANMHLKRSVFCSELPDFAC 563 Query: 570 --NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627 + +I + IK++T C+ R + N + T I N D+A RR Sbjct: 564 SGSKKIRSDNIKKLT-EPCVIGRPCFSNKINN-RNHATIIIDTNYKPVFDRIDNALMRRI 621 Query: 628 IVIPFDKPIANR------------------DASFAQKLETK-YTLEAKKWFLKGVKAY 666 V+ F + D K++ Y +K K Y Sbjct: 622 AVVRFRTHFSQPSGREAAENNDAYDKVKLLDEGLDGKIQNNRYRFAFLYLLVKWYKKY 679 >gi|260893832|ref|YP_003239929.1| Bifunctional DNA primase/polymerase [Ammonifex degensii KC4] gi|260865973|gb|ACX53079.1| Bifunctional DNA primase/polymerase [Ammonifex degensii KC4] Length = 283 Score = 106 bits (265), Expect = 1e-20, Method: Composition-based stats. Identities = 36/237 (15%), Positives = 65/237 (27%), Gaps = 34/237 (14%) Query: 8 EQAKQAIHNGFKLIPLR----------------LGDKRPQRLGKWEEQLLSSEKI----D 47 A++ G+ ++PL G K P +E SE I Sbjct: 10 YYAERF---GWAVLPLHSIAGGRCTCGRVDCPSPG-KHPLTRHGVKEASKDSEAIAAWWR 65 Query: 48 KLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFR 107 + P G G + D+D + + + + +I + FR Sbjct: 66 RWPWANIGIATGKAS-GFFVLDVDGPEGEDSLYELVRRHGELPETVEQITGSGGRHLLFR 124 Query: 108 MNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSE 167 M + + LD+ G G Y VA + Y W +V Sbjct: 125 MPEG--RAIGNKVRLAPGLDVRGEGGYIVAAPSIHAGGRRYEWEFSSRPGEV-QIAEAPG 181 Query: 168 EDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNG 224 +E L + + P+ ++ + N I A + + Sbjct: 182 WLLELLAGPAEGLGRPVEVWRQ------LVSEGVEEGQRNNSIAALAGHLLRKRVDP 232 >gi|17158691|ref|NP_478202.1| hypothetical protein alr7555 [Nostoc sp. PCC 7120] gi|17134640|dbj|BAB77198.1| alr7555 [Nostoc sp. PCC 7120] Length = 332 Score = 106 bits (265), Expect = 1e-20, Method: Composition-based stats. Identities = 45/313 (14%), Positives = 85/313 (27%), Gaps = 56/313 (17%) Query: 18 FKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLP---------------ACGFGFVCG--V 60 ++++P KRP WE+ S +++ G VCG Sbjct: 19 WRIVPTF--GKRPLGKE-WEKNTYSPKELQTELVRRRLKFWTNNRLITPTGVALVCGFNH 75 Query: 61 GEQPLYAFDIDS---------------------------KDEKTANTFKDTFEILHGTPI 93 + L A D D +D + + L T Sbjct: 76 PQGYLVAIDCDGETSWRHIIQINEHLEPKELNQLTPAETRDTPMESLHDRAQKYLPPTIA 135 Query: 94 VRIGQKPKILIPFRMNKEGIKKKKTTESTQG---HLDILGCGQYFVAYNIHPKTKKEYTW 150 G+K + + + K + K+ + G HL+ G + + Y W Sbjct: 136 FTSGRKYRSQRLYLIPKSKAWEVKSRKIKTGKDEHLEFRGKNLASILPPSFHPEGRNYRW 195 Query: 151 TTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNN--NRQYTNR 208 + + + + + ++ + +K + +N Sbjct: 196 LPGCSPSE-RQIEIAPDWVIAQMLAKQEKTRKFNLLKEKYNRRYGVDRYAHLIPSIESNI 254 Query: 209 EITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYK 268 + L + + WI V MA+ S + WS+ Y YK Sbjct: 255 QTALVLLEVIHPRFADDYHSWIQVGMALKSV---SPILFKAWDTWSQLSPKYKPGECAYK 311 Query: 269 WDTFDFEEIGDTA 281 W +F I Sbjct: 312 WQSFKKTGITIRT 324 >gi|20178485|ref|NP_619906.1| CPXV122 protein [Cowpox virus] gi|20153103|gb|AAM13564.1|AF482758_115 CPXV122 protein [Cowpox virus] Length = 785 Score = 106 bits (265), Expect = 1e-20, Method: Composition-based stats. Identities = 61/358 (17%), Positives = 122/358 (34%), Gaps = 51/358 (14%) Query: 350 KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR-----QNVEENSKAKS 404 +I + L + + ++ + N++ + + ++ + K K+ Sbjct: 332 RILDTNSVLLTERGDHIVWINNSWKFNSEEPLITKLILSIRHQLPKEYSSELLCPRKRKT 391 Query: 405 TAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVE 462 ++ + S+ + D+ L ++G+LDL G K+ T STG F + Sbjct: 392 VEANIRDMLVDSVET---DTYPDKLPFKNGVLDLVDGMFYSGDDAKKYTCTVSTGFKFDD 448 Query: 463 G------EPSQEFLDLVSGYFE----SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGS 512 +E +++++ +++ + + + + L G K G + Sbjct: 449 TKFVEDSPEMEELMNIINDIQPLTDENKKNRELYEKTLSSCLCGATK-GCLTFFFGETAT 507 Query: 513 GKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE--- 569 GKST L+K A G+ +V + NP + + R V SE + Sbjct: 508 GKSTTKRLLKSAIGDLFVETGQTILTD----VLDKGPNPFIANMHLKRSVFCSELPDFAC 563 Query: 570 --NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627 + +I + IK++T C+ R + N + T I N D+A RR Sbjct: 564 SGSKKIRSDNIKKLT-EPCVIGRPCFSNKINN-RNHATIIIDTNYKPVFDRIDNALMRRI 621 Query: 628 IVIPFDKPIANR------------------DASFAQKLETK-YTLEAKKWFLKGVKAY 666 V+ F + D K++ Y +K K Y Sbjct: 622 AVVRFRTHFSQPSGREAAENNDAYDKVKLLDEGLDGKIQNNRYRFAFLYLLVKWYKKY 679 >gi|51342262|gb|AAU01306.1| MPXV-WRAIR096 [Monkeypox virus] gi|58220566|gb|AAW67854.1| MPXV-SL-096 [Monkeypox virus] gi|59858902|gb|AAX09197.1| MPXV-COP-096 [Monkeypox virus] gi|68448778|gb|AAY96901.1| NTPase [Monkeypox virus] gi|68449380|gb|AAY97500.1| NTPase [Monkeypox virus] gi|68449580|gb|AAY97699.1| NTPase [Monkeypox virus] Length = 785 Score = 106 bits (265), Expect = 1e-20, Method: Composition-based stats. Identities = 61/358 (17%), Positives = 122/358 (34%), Gaps = 51/358 (14%) Query: 350 KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR-----QNVEENSKAKS 404 +I + L + + ++ + N++ + + ++ + K K+ Sbjct: 332 RILDTNSVLLTERGDHIVWINNSWKFNSEEPLITKLILSIRHQLPKEYSSELLCPRKRKT 391 Query: 405 TAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVE 462 ++ + S+ + D+ L ++G+LDL G K+ T STG F + Sbjct: 392 VEANIRDMLVDSVET---DTYPDKLPFKNGVLDLVDGMFYSGDDAKKYTCTVSTGFKFDD 448 Query: 463 G------EPSQEFLDLVSGYFE----SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGS 512 +E +++++ +++ + + + + L G K G + Sbjct: 449 TKFVEDSPEMEELMNIINDIQPLTDENKKNRELYEKTLSSCLCGATK-GCLTFFFGETAT 507 Query: 513 GKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE--- 569 GKST L+K A G+ +V + NP + + R V SE + Sbjct: 508 GKSTTKRLLKSAIGDLFVETGQTILTD----VLDKGPNPFIANMHLKRSVFCSELPDFAC 563 Query: 570 --NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627 + +I + IK++T C+ R + N + T I N D+A RR Sbjct: 564 SGSKKIRSDNIKKLT-EPCVIGRPCFSNKINN-RNHATIIIDTNYKPVFDRIDNALMRRI 621 Query: 628 IVIPFDKPIANR------------------DASFAQKLETK-YTLEAKKWFLKGVKAY 666 V+ F + D K++ Y +K K Y Sbjct: 622 AVVRFRTHFSQPSGREAAENNDAYDKVKLLDEGLDGKIQNNRYRFAFLYLLVKWYKKY 679 >gi|2772775|gb|AAB96514.1| putative 90.4k protein [Vaccinia virus] gi|47088430|gb|AAT10500.1| NTPase [Vaccinia virus] Length = 785 Score = 106 bits (265), Expect = 1e-20, Method: Composition-based stats. Identities = 62/358 (17%), Positives = 122/358 (34%), Gaps = 51/358 (14%) Query: 350 KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR-----QNVEENSKAKS 404 +I + L + + ++ + N++ + + ++ + K K+ Sbjct: 332 RILDTNSVLLTERGDHIVWINNSWKFNSEEPLITKLILSIRHQLPKEYSSELLCPRKRKT 391 Query: 405 TAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVE 462 ++ I S+ + D+ L ++G+LDL G K+ T STG F + Sbjct: 392 VEANIRDMLIDSVET---DTYPDKLPFKNGVLDLVDGMFYSGDDAKKYTCTVSTGFKFDD 448 Query: 463 G------EPSQEFLDLVSGYFE----SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGS 512 +E +++++ +++ + + + + L G K G + Sbjct: 449 TKFVEDSPEMEELMNIINDIQPLTDENKKNRELYEKTLSSCLCGATK-GCLTFFFGETAT 507 Query: 513 GKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE--- 569 GKST L+K A G+ +V + NP + + R V SE + Sbjct: 508 GKSTTKRLLKSAIGDLFVETGQTILTD----VLDKGPNPFIANMHLKRSVFCSELPDFAC 563 Query: 570 --NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627 + +I + IK++T C+ R + N + T I N D+A RR Sbjct: 564 SGSKKIRSDNIKKLT-EPCVIGRPCFSNKINN-RNHATIIIDTNYKPVFDRIDNALMRRI 621 Query: 628 IVIPFDKPIANR------------------DASFAQKLETK-YTLEAKKWFLKGVKAY 666 V+ F + D K++ Y +K K Y Sbjct: 622 AVVRFRTHFSQPSGREAAENNDAYDKVKLLDEGLDGKIQNNRYRFAFLYLLVKWYKKY 679 >gi|255283191|ref|ZP_05347746.1| conserved hypothetical protein [Bryantella formatexigens DSM 14469] gi|255266264|gb|EET59469.1| conserved hypothetical protein [Bryantella formatexigens DSM 14469] Length = 1386 Score = 106 bits (265), Expect = 1e-20, Method: Composition-based stats. Identities = 68/329 (20%), Positives = 126/329 (38%), Gaps = 27/329 (8%) Query: 447 TKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNK-AQRFIH 505 +K Y +K P G + + L+S + EE +G + G +K Q+F+ Sbjct: 122 SKNDYASKRLSYPLEAG-EIKAYDRLISTLYSPEE-RHKIEWAIGAIVSGESKTIQKFMV 179 Query: 506 IRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIIS 565 + G G+GKST++N+I+ F + + + + +L + +V I Sbjct: 180 LYGAAGTGKSTVLNIIEKLFDGYCTV-------FSAKDLGSSGSQFALEPFKTNPLVAIQ 232 Query: 566 ETNENDEINA-AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWW 624 E I+ ++ + + MT + +TY+ F+ NK + + + Sbjct: 233 HDGELSRIDDNTRLNSLVSHELMTVNEKFKSTYAS-RFKCFLFVGSNKPVKITDGKSGLI 291 Query: 625 RRYIVI-PFDKPIANRDAS-FAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKA 682 RR I + P K I +R+ + +++ + L A W +GV D IP L A Sbjct: 292 RRLIDVHPSGKKIPSREYNQLVHQIDFE--LGAIAWHCRGVYMENPDYYDDYIPVEMLDA 349 Query: 683 KEE-ERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLN 741 + D+Y + + G +L + Y +Y E S R Sbjct: 350 TNDFYNFVIDSYSVFKRED---GTSLKAAW----EMYKQYCEDAK--VPYPDSRRVFKEE 400 Query: 742 LKQKGFIGGIKREKIEKEWKSKRIIKGLK 770 LK F + R ++E + + KG + Sbjct: 401 LKN-YFREVLDRFEMEDGTRVRSYYKGFR 428 >gi|90660347|gb|ABD97461.1| NTPase [Cowpox virus] Length = 785 Score = 106 bits (264), Expect = 1e-20, Method: Composition-based stats. Identities = 61/358 (17%), Positives = 122/358 (34%), Gaps = 51/358 (14%) Query: 350 KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR-----QNVEENSKAKS 404 +I + L + + ++ + N++ + + ++ + K K+ Sbjct: 332 RILDTNSVLLTERGDHIVWINNSWKFNSEEPLITKLILSIRHQLPKEYSSELLCPRKRKT 391 Query: 405 TAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVE 462 ++ + S+ + D+ L ++G+LDL G K+ T STG F + Sbjct: 392 VEANIRDMLVDSVET---DTYPDKLPFKNGVLDLVDGMFYSGDDAKKYTCTVSTGFKFDD 448 Query: 463 G------EPSQEFLDLVSGYFE----SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGS 512 +E +++++ +++ + + + + L G K G + Sbjct: 449 TKFVEDSPEMEELMNIINDIQPLTDENKKNRELYEKTLSSCLCGATK-GCLTFFFGETAT 507 Query: 513 GKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE--- 569 GKST L+K A G+ +V + NP + + R V SE + Sbjct: 508 GKSTTKRLLKSAIGDLFVETGQTILTD----VLDKGPNPFIANMHLKRSVFCSELPDFAC 563 Query: 570 --NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627 + +I + IK++T C+ R + N + T I N D+A RR Sbjct: 564 SGSKKIRSDNIKKLT-EPCVIGRPCFSNKINN-RNHATIIIDTNYKPVFDRIDNALMRRI 621 Query: 628 IVIPFDKPIANR------------------DASFAQKLETK-YTLEAKKWFLKGVKAY 666 V+ F + D K++ Y +K K Y Sbjct: 622 AVVRFRTHFSQPSGREAAENNDAYDKVKLLDEGLDGKIQNNRYRFAFLYLLVKWYKKY 679 >gi|22164699|ref|NP_671612.1| EVM094 [Ectromelia virus] gi|22123840|gb|AAM92398.1|AF523264_94 EVM094 [Ectromelia virus] Length = 785 Score = 106 bits (264), Expect = 2e-20, Method: Composition-based stats. Identities = 61/358 (17%), Positives = 122/358 (34%), Gaps = 51/358 (14%) Query: 350 KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR-----QNVEENSKAKS 404 +I + L + + ++ + N++ + + ++ + K K+ Sbjct: 332 RILDTNSVLLTERGDHIVWINNSWKFNSEEPLITKLILSIRHQLPKEYSSELLCPRKRKT 391 Query: 405 TAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVE 462 ++ + S+ + D+ L ++G+LDL G K+ T STG F + Sbjct: 392 VEANIRDMLVDSVET---DTYPDKLPFKNGVLDLVDGMFYSGDDAKKYTCTVSTGFKFDD 448 Query: 463 G------EPSQEFLDLVSGYFE----SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGS 512 +E +++++ +++ + + + + L G K G + Sbjct: 449 TKFVEDSPEMEELMNIINDIQPLTDENKKNRELYEKTLSSCLCGATK-GCLTFFFGETAT 507 Query: 513 GKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE--- 569 GKST L+K A G+ +V + NP + + R V SE + Sbjct: 508 GKSTTKRLLKSAIGDLFVETGQTILTD----VLDKGPNPFIANMHLKRSVFCSELPDFAC 563 Query: 570 --NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627 + +I + IK++T C+ R + N + T I N D+A RR Sbjct: 564 SGSKKIRSDNIKKLT-EPCVIGRPCFSNKINN-RNHATIIIDTNYKPVFDRIDNALMRRI 621 Query: 628 IVIPFDKPIANR------------------DASFAQKLETK-YTLEAKKWFLKGVKAY 666 V+ F + D K++ Y +K K Y Sbjct: 622 AVVRFRTHFSQPSGREAAENNDAYDKVKLLDEGLDGKIQNNRYRFAFLYLLVKWYKKY 679 >gi|137601|sp|P21010|VD05_VACCC RecName: Full=Protein D5 gi|335450|gb|AAA48102.1| putative D5R [Vaccinia virus Copenhagen] Length = 785 Score = 106 bits (263), Expect = 2e-20, Method: Composition-based stats. Identities = 55/280 (19%), Positives = 96/280 (34%), Gaps = 43/280 (15%) Query: 423 DSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVEG------EPSQEFLDLVS 474 D+ L ++G+LDL G K+ T STG F + +E +++++ Sbjct: 407 DTYPDKLPFKNGVLDLVDGMFYSGDDAKKYTCTVSTGFKFDDTKFVEDSPEMEELMNIIN 466 Query: 475 GYFE----SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530 +++ + + + + L G K G +GKST L+K A G+ +V Sbjct: 467 DIQPLTDENKKNRELYEKTLSSCLCGATK-GCLTFFFGETATGKSTTKRLLKSAIGDLFV 525 Query: 531 INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE-----NDEINAAKIKQMTGGD 585 + NP + + R V SE + + +I + IK++T Sbjct: 526 ETGQTILTD----VLDKGPNPFIANMHLKRSVFCSELPDFACSGSKKIRSDNIKKLT-EP 580 Query: 586 CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR------ 639 C+ R + N + T I N D+A RR V+ F + Sbjct: 581 CVIGRPCFSNKINN-RNHATIIIDTNYKPVFDRIDNALMRRIAVVRFRTHFSQPSGREAA 639 Query: 640 ------------DASFAQKLETK-YTLEAKKWFLKGVKAY 666 D K++ Y +K K Y Sbjct: 640 ENNDAYDKVKLLDEGLDGKIQNNRYRFAFLYLLVKWYKKY 679 >gi|6969760|gb|AAF33972.1| TD5R [Vaccinia virus Tian Tan] Length = 785 Score = 106 bits (263), Expect = 2e-20, Method: Composition-based stats. Identities = 57/280 (20%), Positives = 96/280 (34%), Gaps = 43/280 (15%) Query: 423 DSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVEG---EPSQEFLDLVS--- 474 D+ L ++G+LDL G K+ T STG F + E S E +L++ Sbjct: 407 DTYPDKLPFKNGVLDLVDGMFYSGDDAKKYTCTVSTGFKFDDTKFVEDSPEMEELMNIIK 466 Query: 475 GYFE----SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530 +++ + + + + L G K G +GKST L+K A G+ +V Sbjct: 467 DIQPLTDENKKNRELYEKTLSSCLCGATK-GCLTFFFGETATGKSTTKRLLKSAIGDLFV 525 Query: 531 INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE-----NDEINAAKIKQMTGGD 585 + NP + + R V SE + + +I + IK++T Sbjct: 526 ETGQTILTD----VLDKGPNPFIANMHLKRSVFCSELPDFACSGSKKIRSDNIKKLT-EP 580 Query: 586 CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR------ 639 C+ R + N + T I N D+A RR V+ F + Sbjct: 581 CVIGRPCFSNKINN-RNHATIIIDTNYKPVFDRIDNALMRRIAVVRFRTHFSQPSGREAA 639 Query: 640 ------------DASFAQKLETK-YTLEAKKWFLKGVKAY 666 D K++ Y +K + Y Sbjct: 640 ENNDAYDKVKLLDEGLDGKIQNNRYRFAFLYLLVKWYRKY 679 >gi|9632024|ref|NP_048813.1| hypothetical protein PBCV1_A456L [Paramecium bursaria Chlorella virus 1] gi|1620128|gb|AAC96824.1| contains ATP/GTP-binding site motif A [Paramecium bursaria Chlorella virus 1] Length = 654 Score = 106 bits (263), Expect = 2e-20, Method: Composition-based stats. Identities = 70/431 (16%), Positives = 141/431 (32%), Gaps = 40/431 (9%) Query: 367 FDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSS 426 +SE + K W QN++ A + + L S Sbjct: 233 RAVSEIKDFVYSRLKKEVSWEQWKNATQNMKNVGSAVEYLTNCHDHQL-----PFLHKSR 287 Query: 427 RFLGEQDGIL-------DLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLD---LVSGY 476 +G+ +K + + +K F F + Sbjct: 288 GVYSFYNGVYIAPEDRFHCFETEKEPLSDSIVASKFIEGNFDNTHYDDWFDIPTPHLDSI 347 Query: 477 FE----SEEVMDYFTRCVGMALLGGN---KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529 EEV + +G L N Q +G+ +GKST++ + F Sbjct: 348 MIYQQWEEEVQRWLFALLGRILYPVNQVDSWQVIPFFKGLAATGKSTIILKVIKNFFETV 407 Query: 530 VINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTA 589 + ++++ + + V+ E + I A+ + M G+ + Sbjct: 408 DVGILSNNVERKFG---------ISAFHDKYCVLAPEIKSDLAIEQAEFQSMVSGEDVQV 458 Query: 590 RLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLET 649 + + ++E S + N+ + + RR +V F KP+ N D +KL+ Sbjct: 459 NVKHKKAFAE-EWSVPMALAGNEVPGWADNGGSIQRRMVVFEFKKPVRNGDMKLGEKLD- 516 Query: 650 KYTLEAKKWFLKGVKAYISKGLDVDI----PEVCLKAKEEERQGTDTYQAWIDD-CCDIG 704 K + K K DV+I PE + +E + T+ ++++ +G Sbjct: 517 KELPYILRKCNKAYLDLAGKYSDVNIWSVLPEYFINTREALARATNFIESFMASGDVILG 576 Query: 705 ENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGF-IGGIKREKIEKEWKSK 763 EN + E+ + + K+++ T ++ G G + + + + Sbjct: 577 ENEICPFGDFKSALREHATMNVMHT-KQLTADVFTGPFEKYGIKYLGTQTLEYCGQSVNT 635 Query: 764 RIIKGLKLKPA 774 I+GL LK A Sbjct: 636 EFIQGLSLKSA 646 >gi|19718057|gb|AAG37582.1| CMP107R [Camelpox virus CMS] Length = 785 Score = 106 bits (263), Expect = 2e-20, Method: Composition-based stats. Identities = 54/280 (19%), Positives = 96/280 (34%), Gaps = 43/280 (15%) Query: 423 DSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVEG------EPSQEFLDLVS 474 D+ L ++G+LDL G K+ T STG F + +E +++++ Sbjct: 407 DTYPDKLPFKNGVLDLVDGMFYSGDDAKKYTCTVSTGFKFDDTKFVEDSPEMKELMNIIN 466 Query: 475 GYFE----SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530 +++ + + + + L G K G +GKST L+K A G+ +V Sbjct: 467 DIQPLTDENKKNRELYEKTLSSCLCGATK-GCLTFFFGETATGKSTTKRLLKSAIGDLFV 525 Query: 531 INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE-----NDEINAAKIKQMTGGD 585 + NP + + R V SE + + +I + IK++T Sbjct: 526 ETGQIILTD----VLDKGPNPFIANMHLKRSVFCSELPDFACSGSKKIRSDNIKKLT-EP 580 Query: 586 CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR------ 639 C+ R + N + T I N D+A RR V+ F + Sbjct: 581 CVIGRPCFSNKINN-RNHATIIIDTNYKPVFDRIDNALMRRIAVVRFRTHFSQPSGREAA 639 Query: 640 ------------DASFAQKLETK-YTLEAKKWFLKGVKAY 666 D K++ Y +K + Y Sbjct: 640 ENNDAYDKVKLLDEGLDGKIQNNRYRFAFLYLLVKWYRKY 679 >gi|18640342|ref|NP_570498.1| CMLV108 [Camelpox virus] gi|18483018|gb|AAL73815.1|AF438165_105 putative NTPase [Camelpox virus M-96] Length = 785 Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats. Identities = 54/280 (19%), Positives = 96/280 (34%), Gaps = 43/280 (15%) Query: 423 DSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVEG------EPSQEFLDLVS 474 D+ L ++G+LDL G K+ T STG F + +E +++++ Sbjct: 407 DTYPDKLPFKNGVLDLVDGMFYSGDDAKKYTCTVSTGFKFDDTKFVEDSPEMKELMNIIN 466 Query: 475 GYFE----SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530 +++ + + + + L G K G +GKST L+K A G+ +V Sbjct: 467 DIQPLTDENKKNRELYEKTLSSCLCGATK-GCLTFFFGETATGKSTTKRLLKSAIGDLFV 525 Query: 531 INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE-----NDEINAAKIKQMTGGD 585 + NP + + R V SE + + +I + IK++T Sbjct: 526 ETGQIILTD----VLDKGPNPFIANMHLKRSVFCSELPDFACSGSKKIRSDNIKKLT-EP 580 Query: 586 CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR------ 639 C+ R + N + T I N D+A RR V+ F + Sbjct: 581 CVIGRPCFSNKINN-RNHATIIIDTNYKPVFDRIDNALMRRIAVVRFRTHFSQPSGREAA 639 Query: 640 ------------DASFAQKLETK-YTLEAKKWFLKGVKAY 666 D K++ Y +K + Y Sbjct: 640 ENNDAYDKVKLLDEGLDGKIQNNRYRFAFLYLLVKWYRKY 679 >gi|326439149|ref|YP_004300279.1| putative superfamily 3 helicase [Mavirus] gi|325484986|gb|ADZ16400.1| putative superfamily 3 helicase [Mavirus] Length = 652 Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats. Identities = 66/376 (17%), Positives = 117/376 (31%), Gaps = 30/376 (7%) Query: 394 QNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYIT 453 + + N+ K S+ + + IT + + Q+G +L + TK +I Sbjct: 108 KMILNNTFIKRNISSIRSNLTYDIT---FNDDPDGIHFQNGRFNLLNNTLEERTKPCFIN 164 Query: 454 KSTGTPF--VEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQR-FIHIRGVG 510 + F + E + F +E +Y +G L G A++ F+ G G Sbjct: 165 QYIKRDFINPKEETINWLNSKIDQLFREKEAREYCLHMLGGMLSGRVCAKQEFLVNYGQG 224 Query: 511 GSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN 570 GKSTL N I A + Y + + + N + I Sbjct: 225 ARGKSTLYNFINAAVSDVYFQCLKNDTFSNHNNNKDKSLNSFNNYTRYYFLNEIDT---- 280 Query: 571 DEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVI 630 +N IK + G + Y + ++ T V N + + D RR Sbjct: 281 RSLNTDLIKSVVDG-KIQTNKLYQDGTFKTRTQGTLIFVSNHMINFK-TDSGIERRLKGY 338 Query: 631 PFDKPIANRDASF--------AQKLETKYT---LEAKKWFLKGVKAYISKGLDVDIPEVC 679 + + +KL E K + + + K IPE Sbjct: 339 EYKNEFTDDKTRVNNDTVYLKDEKLFNAEENFTDEQKNAMFYILSSQLVKENVPTIPECF 398 Query: 680 LKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYS-EYREQELNYDRKRISTRTV 738 ++ D + +I+ + + ++ EY +K I V Sbjct: 399 TSVTDDIVDANDEWAHFIEKYLIEEKGAKVHIDYIIENVRLEY------PTKKNIGRSQV 452 Query: 739 TLNLKQKGFIGGIKRE 754 LK KGF K + Sbjct: 453 LSELKDKGFNYNRKLK 468 >gi|170751665|ref|YP_001757925.1| hypothetical protein Mrad2831_5295 [Methylobacterium radiotolerans JCM 2831] gi|170658187|gb|ACB27242.1| hypothetical protein Mrad2831_5295 [Methylobacterium radiotolerans JCM 2831] Length = 1349 Score = 105 bits (262), Expect = 2e-20, Method: Composition-based stats. Identities = 45/335 (13%), Positives = 102/335 (30%), Gaps = 55/335 (16%) Query: 5 QWKEQAKQAIHNGFKLIPLRLGDKR-------PQ------RLGKWEEQLLSSEKIDKLPA 51 ++ A + NG+ L P +R P + +E+L +++++ Sbjct: 70 RFSAVAPACVANGWSLFPQARSGRRGPILVKQPGRSSKALQWKPLQERLPTADELSWWAE 129 Query: 52 -------CGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTP-IVRIGQKPKIL 103 + G DID D A + G R+G+ P+++ Sbjct: 130 SDGPRNRANVALIMGEVSGRALCLDIDVSDPTLAQAILALVDRHLGRTEFRRVGRAPRLV 189 Query: 104 IPFRMNKEGIKKKKT----TESTQGH---LDILGCGQYFVAYNIHPKTKKEYTWTTP--P 154 + +R + + KT + G+ +++L + + H KT + W P Sbjct: 190 LIYRSDVSDPVRNKTYALDAKDDGGNDQAIEVLADRKPVTGFGAHHKTGAHFQWVGACRP 249 Query: 155 HRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKK-------SIIPSKTWTNNNNRQYTN 207 E P++++ VE + + + + T + Q Sbjct: 250 DTHGPEHAPVITQAQVEDFISAVDAAGIIVPNLRNAVAWGDGVPLDPALVTASGFIQPAV 309 Query: 208 REITAFLSCFGEEFYNGSHDEWIPV----------VMAVHHETRGSSKGK---EIARRWS 254 + A + + + ++ MA+ E R + G E+ ++ Sbjct: 310 NQAMAGVKWDAKGKVIAGREAFLHSRAFSYVVRNPGMALTDEGRYALAGHLIAEVTDLFA 369 Query: 255 KQGSTYDEEN-----FNYKWDTFDFEEIGDTAKKR 284 G + + D+ + + R Sbjct: 370 AGGDRFRSSTELARGCRERIDSAAAKLARGEVRAR 404 >gi|239621443|ref|ZP_04664474.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239515904|gb|EEQ55771.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 766 Score = 105 bits (262), Expect = 3e-20, Method: Composition-based stats. Identities = 53/339 (15%), Positives = 105/339 (30%), Gaps = 49/339 (14%) Query: 6 WKEQAKQAIHNGF-KLIPLRLGDKRPQRLG--KWEEQLLSSEKIDKL----PACGFGFVC 58 + A G+ ++IPL G K P G + ++ E++ P G V Sbjct: 7 YTAAAPMYRAAGWMQVIPLPEGRKTPPPAGFTGRSRKPVTDEQVQVWSQATPDANTGIVI 66 Query: 59 GVGEQPLYAFDIDSKD-----EKTANTFKDTFEILHGTPIVRIGQ-----KPKILIPFRM 108 + + DID+ A + + L P P + +++ Sbjct: 67 ---PEGVLVLDIDAAQGHQVKADGAKGISELSQELGVLPATWSSTAHGIDSPARHLFYKV 123 Query: 109 NKEGIKKKKTTESTQGHLDILGCG-QYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSE 167 + +DIL G +Y V + + + Y W TP F P +S+ Sbjct: 124 PEGL----AWKGGAIEGVDILQPGHRYSVVWPSIHPSGEMYCWYTPSGAF-ASTLPHISD 178 Query: 168 --EDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGS 225 + ++ + S T T +N R+Y +R A + + N + Sbjct: 179 LATLPWKWVDYLRKPDNMSNPKELKCSNSNTLTPSNPREYDDRMCKAVNTFLNKTLANPA 238 Query: 226 -----HDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTY----------DEENFNYKWD 270 HD + V A+ + + +G S+ + E +W Sbjct: 239 SKGSRHDTTLQAVWALVNFAQEGHRGAL--DAISQLKPRFIAEVAPDRQGKEREAAREWA 296 Query: 271 TFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSD 309 + + +K + S + + + F + Sbjct: 297 SI----LSGAMEKVNGVQSHVDPCEQSKIERMTPGEFDE 331 >gi|38229245|ref|NP_938338.1| 83R [Yaba monkey tumor virus] gi|38000516|gb|AAR07439.1| 83R [Yaba monkey tumor virus] Length = 786 Score = 105 bits (262), Expect = 3e-20, Method: Composition-based stats. Identities = 62/372 (16%), Positives = 123/372 (33%), Gaps = 53/372 (14%) Query: 351 ITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQN-----VEENSKAKST 405 I + + L + + + + NN+ + + N + + K K Sbjct: 333 IMDANVIRLTERGDHIVWIKNSWKFNNEENVITKLVLNMKDQLPLEYTPDILCPRKRKVI 392 Query: 406 AQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKV--KPTKELYITKSTGTPFVEG 463 +L+ + ++ + D+ L ++G+LD+ +G + +K+ T ST F Sbjct: 393 ENNLKDMLVDTVET---DTYPHILPFKNGVLDITSGSFYYGEESKKFICTVSTDFNFEMD 449 Query: 464 ----EPSQEFLDL---VSGYFE----SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGS 512 S E +L + + + + + R + L G K G + Sbjct: 450 KFLDNDSNEIKELTCIIDDIQPKTCENLKNRELYERTLSSCLCGSTKQ-CITFFFGETAT 508 Query: 513 GKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE--- 569 GKST L++ A G+ ++ + NP + + R V SE + Sbjct: 509 GKSTTKRLLQSAIGDLFIETGQTILTD----LMDKGPNPFISNMHLKRSVFCSELPDFAC 564 Query: 570 --NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627 + +I A +K++T C+ R + N + + I N D A RR Sbjct: 565 SGSKKIRADNVKKLT-EPCIVGRSCFSNKINN-RNHASIIIDTNYKPIFDRVDCALMRRV 622 Query: 628 IVIPFDKPIANR------------------DASFAQKLETK-YTLEAKKWFLKGVKAYIS 668 +I F + D + K++ K Y +K + Y Sbjct: 623 SLIKFRTHFSQPTNVEAAKSNSAYDDVKPLDENLDMKIQKKCYRFAFLNMLVKWYQKYHV 682 Query: 669 KGLD-VDIPEVC 679 + P+ Sbjct: 683 PTMRLFPTPDAV 694 >gi|313768370|ref|YP_004062050.1| hypothetical protein MpV1_167c [Micromonas sp. RCC1109 virus MpV1] gi|312599066|gb|ADQ91090.1| hypothetical protein MpV1_167c [Micromonas sp. RCC1109 virus MpV1] Length = 650 Score = 105 bits (261), Expect = 3e-20, Method: Composition-based stats. Identities = 40/371 (10%), Positives = 115/371 (30%), Gaps = 34/371 (9%) Query: 434 GILDLETGQKVKPTKELYITKSTGTPFVEG--EPSQEFLDLVSGYFESEEVMDYFTRC-- 489 G+ D + + + D + + + + Sbjct: 292 GVYDCRFYPYKSEKYACLDASIIACKYFDQQFDDFSHIEDWTKIPTPYFDSILKYQKFEE 351 Query: 490 ----VGMALLGGNK--------AQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537 + G Q +G+ SGKSTL+ + F + +++ Sbjct: 352 EVCNWAYVMGGRLCFDIGELDGWQIIPFFKGIARSGKSTLITKVFKKFYENEDVGTLSNN 411 Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597 I + L + + + I E + + A+ + + G+ ++ + T Sbjct: 412 IEKKFG---------LSAIKDAFMFIAPEVKGDLALEQAEFQSIVSGEDVSVAVKNK-TA 461 Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKK 657 + N+ ++ + RR + F K + + D +KL Sbjct: 462 VSIEWKVPGVLGGNEVPNWKDNSGSVLRRILPWNFGKQVQDADPQLDEKLNM-ELPIILL 520 Query: 658 WFLKGVK----AYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD-CCDIGENLWEESH 712 ++ Y ++ + +P+ + +++ + +++ +G++L+ Sbjct: 521 KCVRAYHDYSNKYRNRDIWNVVPKYFKQIQKQVAMVASSLTNFLESTYVVLGDDLFVPQK 580 Query: 713 SLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEW-KSKRIIKGLKL 771 ++++ ++ N + + ++ K + K++ II GL + Sbjct: 581 DFVTKFNQHCKEN-NLGSHKFHQDFYAGPFSSREIEVRVETVKYKGRVCKNQPIIYGLDI 639 Query: 772 KPAFESVDDNS 782 + D++ Sbjct: 640 VTDDLTYTDDN 650 >gi|157953752|ref|YP_001498643.1| hypothetical protein AR158_C562L [Paramecium bursaria Chlorella virus AR158] gi|156068400|gb|ABU44107.1| hypothetical protein AR158_C562L [Paramecium bursaria Chlorella virus AR158] Length = 654 Score = 104 bits (260), Expect = 4e-20, Method: Composition-based stats. Identities = 67/454 (14%), Positives = 145/454 (31%), Gaps = 39/454 (8%) Query: 345 SLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKS 404 K+ + ++ D+ E + + + + + S Sbjct: 208 EKKYRKVGDWLYEPIIIDGRDMHSWRAVSEIKDFVYSRLKKEISWEQWKNATLNMKNVGS 267 Query: 405 TAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKEL-------YITKSTG 457 + L + + L S +G+ + E +K Sbjct: 268 AVEYLTNCHDYQL--PFLHKSRGVYSFYNGVYIAPEDRFHCFDTEKEPLSDSIVASKFIE 325 Query: 458 TPFVEGEPSQEFLD---LVSGYFE----SEEVMDYFTRCVGMALLGGN---KAQRFIHIR 507 F F + E+V + +G L N Q + Sbjct: 326 GNFDNTYYDDWFDIPTPHLDSIMIFQQWEEDVQRWLFALLGRMLYPVNQVDSWQVVPFFK 385 Query: 508 GVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISET 567 G+ +GKST++ + F + +++I + + V+ E Sbjct: 386 GLAATGKSTIILKVIKNFFETVDVGILSNNIERKFG---------ISAFHDKFCVLAPEI 436 Query: 568 NENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627 + I A+ + M G+ + + + ++E + N+ + + RR Sbjct: 437 KNDLAIEQAEFQSMVSGEDVQVNVKHKKAFAE-EWRVPMALAGNEVPGWADNGGSIQRRL 495 Query: 628 IVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDI----PEVCLKAK 683 +V F KP+ + D +KL+ K + K K DV+I PE + + Sbjct: 496 VVFEFKKPVRHGDMKLGEKLD-KELPFILRKCNKAYLDLAGKYSDVNIWSVLPEYFINTR 554 Query: 684 EEERQGTDTYQAWI-DDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNL 742 E + T+ ++++ +GEN + E+ + + K+++ T Sbjct: 555 EALARATNFIESFMASSEVILGENEICSLGDFKSALREHATMNVMHT-KQLTADVFTGPF 613 Query: 743 KQKG--FIGGIKREKIEKEWKSKRIIKGLKLKPA 774 ++ G F+G + + ++ I+GL LK A Sbjct: 614 EKYGIKFLGAQTLDYCGQSVHTE-FIQGLSLKSA 646 >gi|241895004|ref|ZP_04782300.1| conserved hypothetical protein [Weissella paramesenteroides ATCC 33313] gi|241871722|gb|EER75473.1| conserved hypothetical protein [Weissella paramesenteroides ATCC 33313] Length = 576 Score = 104 bits (260), Expect = 5e-20, Method: Composition-based stats. Identities = 53/373 (14%), Positives = 113/373 (30%), Gaps = 20/373 (5%) Query: 385 FWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKV 444 FW R V+ S+++S A L+S+ L G L+L T + Sbjct: 177 FWLTLLTRILGVKATSQSESETLIALAKIAHRFDFAKLNSTYTTLVT--GDLNLSTFELE 234 Query: 445 KPTKELYITKSTGTPFVEGEPS--QEFLDLVS-GYFESEEVMDYFTRCVGMALLGGNKAQ 501 + + + + EE + + + LL N Sbjct: 235 PFDARHMTSYQLNLTPDLDAQVMPPAWQKYLDGQWKNDEETVTFILEWLATHLLLQN-PG 293 Query: 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRI 561 + + + GGSGK+ L++ I+ Q + + + E R R Sbjct: 294 KVLFLYSPGGSGKTLLLDAIRAMLSPQLTASVPTYQLDRQFGLEYLLQGD---RQTVVRA 350 Query: 562 VIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNP-- 619 ++ E N I+ +KIK++ + + + P + N N Sbjct: 351 NLVDENAINKGIDWSKIKRLADVNAVMNVDRKNTSSLLLPMNVQCTFAMNTLDVQTNNVE 410 Query: 620 -DDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAKKWFLKGVKAYI-SKGLDVDI 675 A R+ ++ F+K + D +++ + + ++ +K + Sbjct: 411 TTYAVQRKVCLLRFEKSFSKEEMDEDLGRRMI-EELPQLGGLLIQTLKEMKGRDDMVPKE 469 Query: 676 PEVCLKAKEEER----QGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRK 731 L K+ Q ++ + + L ++ +Y + Sbjct: 470 SHKMLADKKAWFASMTQDNSPVASFATERLQQKNDESVTRIELLDAFVDYCVKRDIPKNG 529 Query: 732 RISTRTVTLNLKQ 744 S R L++ Sbjct: 530 FDSPRRFFPELRR 542 >gi|257455559|ref|ZP_05620789.1| bifunctional DNA primase/polymerase domain protein [Enhydrobacter aerosaccus SK60] gi|257447025|gb|EEV22038.1| bifunctional DNA primase/polymerase domain protein [Enhydrobacter aerosaccus SK60] Length = 768 Score = 104 bits (260), Expect = 5e-20, Method: Composition-based stats. Identities = 36/277 (12%), Positives = 79/277 (28%), Gaps = 39/277 (14%) Query: 37 EEQLLSSEK-----IDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHG- 90 + + + K P L A DID ++ + + E HG Sbjct: 54 QNSATTDKDMITQWWGKYPQANIAIFL--AGSGLCAVDIDPRNG--GDYTIEVLESEHGK 109 Query: 91 --TPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEY 148 + ++++ F + K + +D G Y +A + + Y Sbjct: 110 IDSDVLQLTGGGGEHRVFLLPS---GDVKLPGTLGKGVDFKSNG-YIIAEPSSHISGQSY 165 Query: 149 TWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNR 208 W + +++ F + T + ++ Sbjct: 166 VWEMSSDPL----AGAVPSPLPDWIRSFNINAAHASNE-----------TGTLHNGMSDN 210 Query: 209 EITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYK 268 + L + D W+ V MA+ + G + ++ WS+ S +D+ + Sbjct: 211 QYYDVLEALQ-FIGSDDRDTWLNVGMAL--QASGDKRAYQMWCDWSQASSKFDQNDQYRV 267 Query: 269 WDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLAS 305 W +F + +G ++F A Sbjct: 268 WRSFKGKGLGSI-----DLPTIFKMAQDNGWVNSNAK 299 >gi|9634728|ref|NP_039021.1| NTPase, DNA replication [Fowlpox virus] gi|19857121|sp|P21969|VD05_FOWPN RecName: Full=Protein FPV058 gi|7271556|gb|AAF44402.1|AF198100_49 ORF FPV058 NTPase, DNA replication [Fowlpox virus] gi|41023349|emb|CAE52603.1| DNA replication complex protein D5R orthologue [Fowlpox virus isolate HP-438/Munich] Length = 791 Score = 104 bits (259), Expect = 6e-20, Method: Composition-based stats. Identities = 47/235 (20%), Positives = 82/235 (34%), Gaps = 22/235 (9%) Query: 423 DSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVEGEPSQEFLDLVSGYFES- 479 D+ L +G+ D++ + K+ T STG + EG + + + Sbjct: 411 DTYPEKLQFLNGVYDIKDSIFYQGNDAKKFVCTVSTGYKYEEGINVDDITTELMSILDDI 470 Query: 480 -------EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532 E + + + + L+G K G +GKST L+K N ++ Sbjct: 471 QPKTKENFENRELYEQILSSCLMGTTKQ-CIFFFYGETATGKSTTKKLLKSVMHNMFLET 529 Query: 533 AEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE-----NDEINAAKIKQMTGGDCM 587 + Q NP + + R+V SE + + +I + IK++T C+ Sbjct: 530 GQVILTEQ----MDKGPNPFIANMHLKRVVFCSELPDFSCNTSKKIRSDNIKKLT-EPCV 584 Query: 588 TARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDAS 642 R Y N + T I N D+A RR ++ F N Sbjct: 585 VGRSCYSNKINN-RNHATIIIDTNYKPVFDKVDNAIMRRIALVNFKTHFTNTKKK 638 >gi|61228|emb|CAA35068.1| ORF FPD5 [Fowlpox virus] Length = 791 Score = 104 bits (259), Expect = 6e-20, Method: Composition-based stats. Identities = 47/235 (20%), Positives = 82/235 (34%), Gaps = 22/235 (9%) Query: 423 DSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVEGEPSQEFLDLVSGYFES- 479 D+ L +G+ D++ + K+ T STG + EG + + + Sbjct: 411 DTYPEKLQFLNGVYDIKDSIFYQGNDAKKFVCTVSTGYKYEEGINVDDITTELMSILDDI 470 Query: 480 -------EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532 E + + + + L+G K G +GKST L+K N ++ Sbjct: 471 QPKTKENFENRELYEQILSSCLMGTTKQ-CIFFFYGETATGKSTTKKLLKSVMHNMFLET 529 Query: 533 AEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE-----NDEINAAKIKQMTGGDCM 587 + Q NP + + R+V SE + + +I + IK++T C+ Sbjct: 530 GQVILTEQ----MDKGPNPFIANMHLKRVVFCSELPDFSYNTSKKIRSDNIKKLT-EPCV 584 Query: 588 TARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDAS 642 R Y N + T I N D+A RR ++ F N Sbjct: 585 VGRSCYSNKINN-RNHATIIIDTNYKPVFDKVDNAIMRRIALVNFKTHFTNTKKK 638 >gi|182637532|ref|YP_001828703.1| putative helicase [Lactococcus phage 1706] gi|157884971|gb|ABV91262.1| putative helicase [Lactococcus phage 1706] Length = 1317 Score = 104 bits (259), Expect = 6e-20, Method: Composition-based stats. Identities = 61/465 (13%), Positives = 143/465 (30%), Gaps = 64/465 (13%) Query: 327 TADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFW 386 +Y W+ + + + + ++ + ++ Sbjct: 35 VVKGGDFYAY-------WNGETW---------ITDIDSLIKAIDQDSWERFNELRALDPN 78 Query: 387 FNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP 446 + ++ + + Q + I + + + Sbjct: 79 LRINVKQMDFASSGIMAKFQQYCQLRKPSDIQFNK------KILFSNYT----------- 121 Query: 447 TKELYITKSTGTPFVE-GEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGG-NKAQRFI 504 + + + + F +L+S + EE+ +G L G +K ++F+ Sbjct: 122 -PKKTDYSTYQLSYTPTEMETPAFDELMSVLYADEELEKILW-ALGALLSGKMSKIEKFL 179 Query: 505 HIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVII 564 ++ G G+GK T +N+IK F QY + + G + + + ++I Sbjct: 180 YLYGAKGTGKGTAINIIKKMF-EQYWGPIDLRTLT-------GSSEFATSAVTEVPMLID 231 Query: 565 SETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWW 624 ++++ + N + ++T + + + + + Y N+ V+N D Sbjct: 232 ADSDISRIRNEQNLLKLTSHEELMRNVKFKSPY-PVVFDGLLITASNERYTVKNKDSGIT 290 Query: 625 RRYIVI-PFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAK 683 RR IV+ P K + K ++ K +G + Sbjct: 291 RRAIVVNPTGKTVPYDMYQRLYKQIDYEIPGIAYRAMQIFK---KRGASYYEN-LVDTEM 346 Query: 684 EEERQGTDTYQAWIDD-CCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNL 742 E +D A+I + + + + + +Y Y + L Sbjct: 347 VEY---SDKVFAFIRESSFNYIGKEYVKLVDVVPAYQRYLTDMG------WDNKGAKREL 397 Query: 743 KQ---KGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDNSNI 784 K K F +K K E+ + + KG + AF +N + Sbjct: 398 KNELHKYFESYVKDTKDEEGNRIYDVYKGFRTDIAFPEEVNNKEV 442 >gi|260893044|ref|YP_003239141.1| Bifunctional DNA primase/polymerase [Ammonifex degensii KC4] gi|260865185|gb|ACX52291.1| Bifunctional DNA primase/polymerase [Ammonifex degensii KC4] Length = 283 Score = 104 bits (258), Expect = 8e-20, Method: Composition-based stats. Identities = 36/236 (15%), Positives = 66/236 (27%), Gaps = 34/236 (14%) Query: 9 QAKQAIHNGFKLIPLR----------------LGDKRPQRLGKWEEQLLSSEKI----DK 48 A++ G+ ++PL G K P +E SE I + Sbjct: 11 YAERF---GWAVLPLHSIAGGRCTCGRVNCPSPG-KHPLTQHGVKEASKDSETIAAWWRR 66 Query: 49 LPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRM 108 P G G + D+D + + + + +I + FRM Sbjct: 67 WPWANIGVATGSIS-GFFVLDVDGPEGEDSLYELVKRHGELPETVEQITGSGGRHLLFRM 125 Query: 109 NKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEE 168 + + LD+ G G Y VA + + Y W +V + Sbjct: 126 PEG--RAIGNKVRLAPGLDVRGEGGYVVAAPSLHASGRRYEWEFSSRPGEV-EVAEAPGW 182 Query: 169 DVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNG 224 +E L P+ + ++ + N I A + + Sbjct: 183 LLELLAGPAGSQGRPVEEWRQ------LISGGVEEGQRNNSIAALAGHLLRKRVDP 232 >gi|94485354|gb|ABF24463.1| NTPase [Variola virus] gi|94485557|gb|ABF24665.1| NTPase [Variola virus] gi|94488191|gb|ABF27286.1| NTPase [Variola virus] gi|94488391|gb|ABF27485.1| NTPase [Variola virus] gi|109726175|gb|ABG45291.1| NTPase [Variola virus] Length = 785 Score = 103 bits (257), Expect = 1e-19, Method: Composition-based stats. Identities = 59/358 (16%), Positives = 120/358 (33%), Gaps = 51/358 (14%) Query: 350 KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR-----QNVEENSKAKS 404 +I + L + + ++ + N++ + + ++ + K K+ Sbjct: 332 RILDTNSVLLTERGDHIVWINNSWKFNSEEPLITKLILSIRHQLPKEYSSELLCPRKRKT 391 Query: 405 TAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVE 462 ++ + S+ + D+ L ++G+LDL G K+ T STG F + Sbjct: 392 VEANIRDMLVDSVET---DTYPDKLPFKNGVLDLVDGMFYSGDDAKKYTCTVSTGFKFDD 448 Query: 463 G------EPSQEFLDLVSGYFE----SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGS 512 +E +++++ +++ + + + + L G K G + Sbjct: 449 TKFVEDSPEMEELINIINDIQPLTDENKKNRELYEKTLSSCLCGATK-GCLTFFFGETAT 507 Query: 513 GKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN-- 570 GKST L+K A + +V + NP + + R V SE + Sbjct: 508 GKSTTKRLLKSAISDLFVETGQTILTD----VLDKGPNPFIANMHLKRSVFCSELPDFAC 563 Query: 571 ---DEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627 +I + IK++T C+ R + N + T I N D+A RR Sbjct: 564 SGTKKIRSDNIKKLT-EPCVIGRPCFSNKINN-RNHATIIIDTNYKPVFDRIDNALMRRI 621 Query: 628 IVIPFDKPIANR------------------DASFAQKLETK-YTLEAKKWFLKGVKAY 666 V+ F + D K++ Y +K + Y Sbjct: 622 AVVRFRTHFSQPSGREAAENNDAYDKVKLLDEGLDGKIQNNRYRFAFLYLLVKWYRKY 679 >gi|9627616|ref|NP_042139.1| hypothetical protein VARVgp095 [Variola virus] gi|418200|sp|P33069|VD05_VAR67 RecName: Full=Protein D5 gi|62371|emb|CAA47594.1| ATP /GTP binding protein [Variola virus] gi|297275|emb|CAA49036.1| F5R [Variola virus] gi|439013|gb|AAA60843.1| homolog of vaccinia virus CDS D5R; putative [Variola major virus] gi|94483946|gb|ABF23062.1| NTPase [Variola virus] gi|94484149|gb|ABF23264.1| NTPase [Variola virus] gi|94484558|gb|ABF23671.1| NTPase [Variola virus] gi|94484756|gb|ABF23868.1| NTPase [Variola virus] gi|94484954|gb|ABF24065.1| NTPase [Variola virus] gi|94485152|gb|ABF24262.1| NTPase [Variola virus] gi|94485962|gb|ABF25068.1| NTPase [Variola virus] gi|94486163|gb|ABF25268.1| NTPase [Variola virus] gi|94486366|gb|ABF25470.1| NTPase [Variola virus] gi|94486569|gb|ABF25672.1| NTPase [Variola virus] gi|94486771|gb|ABF25873.1| NTPase [Variola virus] gi|94486974|gb|ABF26075.1| NTPase [Variola virus] gi|94487177|gb|ABF26277.1| NTPase [Variola virus] gi|94487583|gb|ABF26681.1| NTPase [Variola virus] gi|94487784|gb|ABF26881.1| NTPase [Variola virus] gi|94488591|gb|ABF27684.1| NTPase [Variola virus] gi|94488792|gb|ABF27884.1| NTPase [Variola virus] gi|94488993|gb|ABF28084.1| NTPase [Variola virus] gi|94489192|gb|ABF28282.1| NTPase [Variola virus] gi|94489392|gb|ABF28481.1| NTPase [Variola virus] gi|94489594|gb|ABF28682.1| NTPase [Variola virus] gi|94489794|gb|ABF28881.1| NTPase [Variola virus] gi|94490203|gb|ABF29288.1| NTPase [Variola virus] gi|109724138|gb|ABG43264.1| NTPase [Variola virus] gi|109724342|gb|ABG43467.1| NTPase [Variola virus] gi|109724544|gb|ABG43668.1| NTPase [Variola virus] gi|109724749|gb|ABG43872.1| NTPase [Variola virus] gi|109725156|gb|ABG44277.1| NTPase [Variola virus] gi|109725361|gb|ABG44481.1| NTPase [Variola virus] gi|109725564|gb|ABG44683.1| NTPase [Variola virus] gi|109725768|gb|ABG44886.1| NTPase [Variola virus] gi|109725971|gb|ABG45088.1| NTPase [Variola virus] gi|109726378|gb|ABG45493.1| NTPase [Variola virus] gi|109726581|gb|ABG45695.1| NTPase [Variola virus] gi|745214|prf||2015436DG F5R gene Length = 785 Score = 103 bits (257), Expect = 1e-19, Method: Composition-based stats. Identities = 59/358 (16%), Positives = 120/358 (33%), Gaps = 51/358 (14%) Query: 350 KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR-----QNVEENSKAKS 404 +I + L + + ++ + N++ + + ++ + K K+ Sbjct: 332 RILDTNSVLLTERGDHIVWINNSWKFNSEEPLITKLILSIRHQLPKEYSSELLCPRKRKT 391 Query: 405 TAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVE 462 ++ + S+ + D+ L ++G+LDL G K+ T STG F + Sbjct: 392 VEANIRDMLVDSVET---DTYPDKLPFKNGVLDLVDGMFYSGDDAKKYTCTVSTGFKFDD 448 Query: 463 G------EPSQEFLDLVSGYFE----SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGS 512 +E +++++ +++ + + + + L G K G + Sbjct: 449 TKFVEDSPEMEELINIINDIQPLTDENKKNRELYEKTLSSCLCGATK-GCLTFFFGETAT 507 Query: 513 GKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN-- 570 GKST L+K A + +V + NP + + R V SE + Sbjct: 508 GKSTTKRLLKSAISDLFVETGQTILTD----VLDKGPNPFIANMHLKRSVFCSELPDFAC 563 Query: 571 ---DEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627 +I + IK++T C+ R + N + T I N D+A RR Sbjct: 564 SGTKKIRSDNIKKLT-EPCVIGRPCFSNKINN-RNHATIIIDTNYKPVFDRIDNALMRRI 621 Query: 628 IVIPFDKPIANR------------------DASFAQKLETK-YTLEAKKWFLKGVKAY 666 V+ F + D K++ Y +K + Y Sbjct: 622 AVVRFRTHFSQPSGREAAENNDAYDKVKLLDEGLDGKIQNNRYRFAFLYLLVKWYRKY 679 >gi|5830656|emb|CAB54695.1| F5R protein [Variola minor virus] gi|94483741|gb|ABF22858.1| NTPase [Variola virus] gi|94484354|gb|ABF23468.1| NTPase [Variola virus] gi|94485759|gb|ABF24866.1| NTPase [Variola virus] gi|94487379|gb|ABF26478.1| NTPase [Variola virus] gi|94487988|gb|ABF27084.1| NTPase [Variola virus] gi|94489998|gb|ABF29084.1| NTPase [Variola virus] Length = 785 Score = 103 bits (257), Expect = 1e-19, Method: Composition-based stats. Identities = 59/358 (16%), Positives = 120/358 (33%), Gaps = 51/358 (14%) Query: 350 KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR-----QNVEENSKAKS 404 +I + L + + ++ + N++ + + ++ + K K+ Sbjct: 332 RILDTNSVLLTERGDHIVWINNSWKFNSEEPLITKLILSIRHQLPKEYSSELLCPRKRKT 391 Query: 405 TAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVE 462 ++ + S+ + D+ L ++G+LDL G K+ T STG F + Sbjct: 392 VEANIRDMLVDSVET---DTYPDKLPFKNGVLDLVDGMFYSGDDAKKYTCTVSTGFKFDD 448 Query: 463 G------EPSQEFLDLVSGYFE----SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGS 512 +E +++++ +++ + + + + L G K G + Sbjct: 449 TKFVEDSPEMEELINIINDIQPLTDENKKNRELYEKTLSSCLCGATK-GCLTFFFGETAT 507 Query: 513 GKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN-- 570 GKST L+K A + +V + NP + + R V SE + Sbjct: 508 GKSTTKRLLKSAISDLFVETGQTILTD----VLDKGPNPFIANMHLKRSVFCSELPDFAC 563 Query: 571 ---DEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627 +I + IK++T C+ R + N + T I N D+A RR Sbjct: 564 SGTKKIRSDNIKKLT-EPCVIGRPCFSNKINN-RNHATIIIDTNYKPVFDRIDNALMRRI 621 Query: 628 IVIPFDKPIANR------------------DASFAQKLETK-YTLEAKKWFLKGVKAY 666 V+ F + D K++ Y +K + Y Sbjct: 622 AVVRFRTHFSQPSGREAAENNDAYDKVKLLDEGLDGKIQNNRYRFAFLYLLVKWYRKY 679 >gi|109724952|gb|ABG44074.1| NTPase [Variola virus] Length = 785 Score = 103 bits (257), Expect = 1e-19, Method: Composition-based stats. Identities = 59/358 (16%), Positives = 120/358 (33%), Gaps = 51/358 (14%) Query: 350 KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR-----QNVEENSKAKS 404 +I + L + + ++ + N++ + + ++ + K K+ Sbjct: 332 RILDTNSVLLTERGDHIVWINNSWKFNSEEPLITKLILSIRHQLPKEYSSELLCPRKRKT 391 Query: 405 TAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVE 462 ++ + S+ + D+ L ++G+LDL G K+ T STG F + Sbjct: 392 VEANIRDMLVDSVET---DTYPDKLPFKNGVLDLVDGMFYSGDDAKKYTCTVSTGFKFDD 448 Query: 463 G------EPSQEFLDLVSGYFE----SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGS 512 +E +++++ +++ + + + + L G K G + Sbjct: 449 TKFVEDSPEMEELINIINDIQPLTDENKKNRELYEKTLSSCLCGATK-GCLTFFFGETAT 507 Query: 513 GKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN-- 570 GKST L+K A + +V + NP + + R V SE + Sbjct: 508 GKSTTKRLLKSAISDLFVETGQTILTD----VLDKGPNPFIANMHLKRSVFCSELPDFAC 563 Query: 571 ---DEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627 +I + IK++T C+ R + N + T I N D+A RR Sbjct: 564 SGTKKIRSDNIKKLT-EPCVIGRPCFSNKINN-RNHATIIIDTNYKPVFDRIDNALMRRI 621 Query: 628 IVIPFDKPIANR------------------DASFAQKLETK-YTLEAKKWFLKGVKAY 666 V+ F + D K++ Y +K + Y Sbjct: 622 AVVRFRTHFSQPSGREAAENNDAYDKVKLLDEGLDGKIQNNRYRFAFLYLLVKWYRKY 679 >gi|301116649|ref|XP_002906053.1| conserved hypothetical protein [Phytophthora infestans T30-4] gi|262109353|gb|EEY67405.1| conserved hypothetical protein [Phytophthora infestans T30-4] Length = 238 Score = 103 bits (257), Expect = 1e-19, Method: Composition-based stats. Identities = 46/241 (19%), Positives = 84/241 (34%), Gaps = 13/241 (5%) Query: 425 SSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEV 482 ++G +G+ DL T + + T + + E + F S F EE Sbjct: 4 DHNYIGFSNGVYDLSTAKFINATDVPKGIQVRKYINQRFEHTETPLFDKYFSFQFTEEED 63 Query: 483 MDYFTRCVGMALL-GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQN 541 ++ +G L +K + I G GGSGKS L NL+K+AFG + S Q Sbjct: 64 REFIYFLIGRCLTVLDDKFDFMLMIHGQGGSGKSLLANLVKFAFGQDQIGLLSNSM--QE 121 Query: 542 RPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESP 601 + + A ++ I +D + M ++ + + Sbjct: 122 KFGLSEFATKQIVCCDDMPHNIAKTLPRSDFL------SMMTRGSISCPVKGKGSIEVLD 175 Query: 602 ASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAKKWF 659 + I N ++ RR +++ F K + + D QK++ + Sbjct: 176 WNIPTLINSNHMPNYKDEAGEIVRRLMIVEFGKQVPDDEVDVELEQKIKDQEFATFLHRC 235 Query: 660 L 660 L Sbjct: 236 L 236 >gi|157952927|ref|YP_001497819.1| hypothetical protein NY2A_B623L [Paramecium bursaria Chlorella virus NY2A] gi|155123154|gb|ABT15022.1| hypothetical protein NY2A_B623L [Paramecium bursaria Chlorella virus NY2A] Length = 654 Score = 103 bits (255), Expect = 2e-19, Method: Composition-based stats. Identities = 65/455 (14%), Positives = 143/455 (31%), Gaps = 43/455 (9%) Query: 345 SLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKS 404 K+ + ++ D+ E + + + + + S Sbjct: 208 EKKYRKVGDWLYEPIIIDGRDMHSWRAVSEIKDFVYSRLKKEISWEQWKNATLNMKNVGS 267 Query: 405 TAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKST-------- 456 + L + + L S +G+ + E + Sbjct: 268 AVEYLTNCHDYQL--PFLHKSRGVYSFYNGVYIAPEDRFHCFDTEKEPLSDSIVASKFIE 325 Query: 457 ----GTPFVEGEPSQEFLDLVSGYFE----SEEVMDYFTRCVGMALLGGN---KAQRFIH 505 T + + + EEV + +G L N Q Sbjct: 326 NIFDNTHYDDWFDIPT--PHLDSIMIFQQWEEEVQRWLFALLGRMLYPVNQVDSWQVVPF 383 Query: 506 IRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIIS 565 +G+ +GKST++ + F + +++I + + V+ Sbjct: 384 FKGLAATGKSTIILKVIKNFFETVDVGILSNNIERKFG---------ISAFHDKFCVLAP 434 Query: 566 ETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625 E + I A+ + M G+ + + + ++E + N+ + + R Sbjct: 435 EIKNDLAIEQAEFQSMVSGEDVQVNVKHKKAFAE-EWRVPMALAGNEVPGWADNGGSIQR 493 Query: 626 RYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDI----PEVCLK 681 R IV F KP+ + D +KL+ K + K K DV+I PE + Sbjct: 494 RLIVFEFKKPVRHGDMKLGEKLD-KELPYILRKCNKAYLDLAGKYSDVNIWSVLPEYFIN 552 Query: 682 AKEEERQGTDTYQAWI-DDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTL 740 +E + T+ ++++ +GEN + E+ + + K+++ Sbjct: 553 TREALARATNFIESFMASSEVILGENEICSLGDFKSALREHATTNVMHT-KQLTADVFAG 611 Query: 741 NLKQKG--FIGGIKREKIEKEWKSKRIIKGLKLKP 773 ++ G F+G + + ++ I+GL LK Sbjct: 612 PFEKYGIKFLGAQTLDYCGQSVHTE-FIQGLSLKS 645 >gi|41057504|ref|NP_957977.1| ORF068 NTPase [Bovine papular stomatitis virus] gi|41018820|gb|AAR98425.1| ORF068 NTPase [Bovine papular stomatitis virus] Length = 788 Score = 103 bits (255), Expect = 2e-19, Method: Composition-based stats. Identities = 56/307 (18%), Positives = 95/307 (30%), Gaps = 52/307 (16%) Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPTK--ELYITKSTGT-----PFVEGEPSQ 467 + D L +G+LDL TG+ + + E T STG + S+ Sbjct: 400 MLVDVSETDVLYDKLPFTNGVLDLATGEFLTGDRAKECVCTVSTGYRFSREEYEAAADSE 459 Query: 468 EFLDL---VSGYFES----EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNL 520 L + + E + R + AL G K + G +GKST L Sbjct: 460 AMRRLVSVIDDIQPNTPENAENRALYERAMSSALCGATK-TVIVFFFGDTMTGKSTSKRL 518 Query: 521 IKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN-----DEINA 575 + Y+ + NP + + R V SE + ++ + Sbjct: 519 LHSVLSGLYIETGQTVLTD----VLDKGPNPFVANMHLRRAVFCSELPDFACNNARKLRS 574 Query: 576 AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP 635 K++T C+ R + N T I N D+A RR ++ F Sbjct: 575 DNFKKLT-EPCIVGRPCFSNKIHN-RNHATFIIDTNYRPVFDRVDNALMRRVALVRFRTH 632 Query: 636 I------------------ANRDASFAQKLETKY-TLEAKKWFLKGVKAYISKGLDVDIP 676 + D S K++ Y + ++ + Y +P Sbjct: 633 FSSAATRAAAVHNIEYSAVKDMDDSLDAKIQRNYFRYAFLRLLVEWFRKYH-------VP 685 Query: 677 EVCLKAK 683 +V L A Sbjct: 686 QVSLDAT 692 >gi|94266791|ref|ZP_01290456.1| RecA-family ATPase-like [delta proteobacterium MLMS-1] gi|93452534|gb|EAT03120.1| RecA-family ATPase-like [delta proteobacterium MLMS-1] Length = 700 Score = 102 bits (254), Expect = 2e-19, Method: Composition-based stats. Identities = 35/236 (14%), Positives = 56/236 (23%), Gaps = 24/236 (10%) Query: 2 PVMQWKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKL----PACGFGFV 57 Q A + + P KRP +++ E+I P GF Sbjct: 40 AKNQALNAALEYAAKDRPVFPCDPATKRPLTKNGFKDATTDPEQIKTWWRKHPRALIGFP 99 Query: 58 CGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKK 117 G L D+D + + P + P+ F + +K Sbjct: 100 TG---NGLMVLDVDPPHGPESLAALEA--KHGPLPATLEQRSPRGRHLFLASNHDVKISA 154 Query: 118 TTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFF 177 LDI G Y + K Y WT E ++ + + Sbjct: 155 NK--LGPGLDIRAKGGYVIVSPSVNSEGKAYQWTNKAEPAP------APEWLIDAISEAT 206 Query: 178 QEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVV 233 T N + R I G+ + W Sbjct: 207 TRATPTPKTGDGRPGDDF------NERGDIRPILERHGWTF-FRTAGAFERWTRPG 255 >gi|23012376|ref|ZP_00052477.1| hypothetical protein Magn03006897 [Magnetospirillum magnetotacticum MS-1] Length = 543 Score = 102 bits (254), Expect = 2e-19, Method: Composition-based stats. Identities = 37/247 (14%), Positives = 77/247 (31%), Gaps = 36/247 (14%) Query: 10 AKQAIHNGFKLIPLR------LGD--KRPQRLGKWEEQLLSSEKIDKL----PACGFGFV 57 A + G+ + P G + +L + ++ +L P+ + Sbjct: 50 APDLVALGWSVFPQNRDDCRGPGKVHGTSFPWKPLQTRLPTDRELRELVTFCPSHNVAGI 109 Query: 58 CGVGEQPLYAFDIDSKDEKTANTFKDTFEILHG-TPIVRIGQKPKILIPFRMNKEGIKKK 116 G A D+D D + + + + G TP R+G+ P+I++ +R K Sbjct: 110 LGPSSAHTCAIDVDVGDLDLSLAIVERADSILGYTPFRRVGRDPRIILIYREAGAATAKS 169 Query: 117 KTTESTQ---------GHLDILGCGQYFVAYNIHPKTKKEYTWTT-PPHRFKVEDTPLLS 166 + ++IL G + +H KT K + W PH E+ ++ Sbjct: 170 DALIRQKKLWLQGPEGHMIEILARGAPVTFFGLHHKTGKYFLWLDRSPHVAPPEEAREVT 229 Query: 167 EEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSH 226 + ++ + + + + E + G Sbjct: 230 RDQIDEFLDAVNALRPLKAGTGRLAMAET--------WTYDAEAGLHVPAEL-----GGE 276 Query: 227 DEWIPVV 233 DEW + Sbjct: 277 DEWNEID 283 >gi|289183832|ref|YP_003457373.1| NTPase [Pseudocowpox virus] gi|288804304|gb|ADC53969.1| NTPase [Pseudocowpox virus] Length = 787 Score = 102 bits (254), Expect = 2e-19, Method: Composition-based stats. Identities = 48/290 (16%), Positives = 85/290 (29%), Gaps = 45/290 (15%) Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGT-------PFVEGEPSQ 467 + D+ L +G+LDL TG+ + + + T + S+ Sbjct: 399 MLVEISETDTQYDKLPFTNGVLDLATGEFLTGDRAKACVCTVSTGYRFSREEYEAAADSE 458 Query: 468 EFLDL---VSGYFES----EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNL 520 L + E + R + AL G K + G +GKST L Sbjct: 459 AMRRLVSVIDDIQPDTPENAENRALYERAMSSALCGNTK-TVIVFFYGETMTGKSTSKRL 517 Query: 521 IKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN-----DEINA 575 + A G ++ + NP + + R V SE + ++ + Sbjct: 518 LMSALGGLFIETGQTVLTD----VLDKGPNPFVANMHLRRAVFCSELPDFACSNARKLRS 573 Query: 576 AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP 635 K++T C+ R + N T I N D+A RR ++ F Sbjct: 574 DNFKKLT-EPCIVGRPCFSNKIHN-RNHATFIIDTNYRPVFDRVDNALMRRVALVRFRTH 631 Query: 636 I------------------ANRDASFAQKLETKY-TLEAKKWFLKGVKAY 666 D K++ Y + ++ Y Sbjct: 632 FSSSATRAAAAHNIEYSAVKEMDEGLDTKIQRNYFRYAFLRLLVQWFGKY 681 >gi|288804172|gb|ADC53838.1| NTPase [Pseudocowpox virus] Length = 787 Score = 102 bits (254), Expect = 2e-19, Method: Composition-based stats. Identities = 48/290 (16%), Positives = 85/290 (29%), Gaps = 45/290 (15%) Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGT-------PFVEGEPSQ 467 + D+ L +G+LDL TG+ + + + T + S+ Sbjct: 399 MLVEISETDTQYDKLPFTNGVLDLATGEFLTGDRAKACVCTVSTGYAFSREEYEAAADSE 458 Query: 468 EFLDL---VSGYFES----EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNL 520 L + E + R + AL G K + G +GKST L Sbjct: 459 AMRRLVSVIDDIQPDTPENAENRALYERAMSSALCGNTK-TVIVFFYGETMTGKSTSKRL 517 Query: 521 IKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN-----DEINA 575 + A G ++ + NP + + R V SE + ++ + Sbjct: 518 LMSALGGLFIETGQTVLTD----VLDKGPNPFVANMHLRRAVFCSELPDFACSNARKLRS 573 Query: 576 AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP 635 K++T C+ R + N T I N D+A RR ++ F Sbjct: 574 DNFKKLT-EPCIVGRPCFSNKIHN-RNHATFIIDTNYRPVFDRVDNALMRRVALVRFRTH 631 Query: 636 I------------------ANRDASFAQKLETKY-TLEAKKWFLKGVKAY 666 D K++ Y + ++ Y Sbjct: 632 FSSSATRAAAAHNIEYSAVKEMDEGLDTKIQRNYFRYAFLRLLVQWFGKY 681 >gi|281419301|ref|ZP_06250316.1| Bifunctional DNA primase/polymerase [Clostridium thermocellum JW20] gi|281406921|gb|EFB37184.1| Bifunctional DNA primase/polymerase [Clostridium thermocellum JW20] Length = 268 Score = 102 bits (253), Expect = 3e-19, Method: Composition-based stats. Identities = 39/250 (15%), Positives = 67/250 (26%), Gaps = 34/250 (13%) Query: 8 EQAKQAIHNGFKLIPL-----------------RLGDKRPQRLGKWEEQLLSSEKIDKL- 49 + A + +IPL K P G ++ E+I K Sbjct: 7 DAALKYAEANIPVIPLHWICEDGSCSCKKGQQCDSKGKHPLYTGWYKNSTADMEQIKKWW 66 Query: 50 ---PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPF 106 P G G L D+D ++T + + T+ L T G+ + F Sbjct: 67 TKTPNANIGIPTGEKSGWLV-LDVDDGGDETLSALESTYGNLPDTVTAVTGRGGR-HYIF 124 Query: 107 RMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLS 166 + + + DI G V + Y W F + Sbjct: 125 KYPEG--RSIPNKTKFASGFDIRSNGGLIVVSPSVHISGNRYEWIKDHSLFD-RNPAEAP 181 Query: 167 EEDVEYLFK--------FFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFG 218 E ++ + + I + + ++ + R T I A L Sbjct: 182 EWLLKLMERVEVLLTPFEGSSIAAEIKEGSRNSTLTSLAGTMRVRGMTEESIYAALLAEN 241 Query: 219 EEFYNGSHDE 228 N DE Sbjct: 242 NARCNPPLDE 251 >gi|73661353|ref|YP_300134.1| hypothetical protein SSP0044 [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72493868|dbj|BAE17189.1| hypothetical protein [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 546 Score = 101 bits (252), Expect = 3e-19, Method: Composition-based stats. Identities = 43/353 (12%), Positives = 119/353 (33%), Gaps = 22/353 (6%) Query: 345 SLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKS 404 + T+ + + ++F ++ + + + + S Sbjct: 79 NDTILVEMMISIFHIKRFDSELFVFKDKGWQKVNEDELQGLISKMIQVL--LVDYKPSLS 136 Query: 405 TAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLET----GQKVKPTKELYIT-KSTGTP 459 +++ G SI + L + +++G + +L+ G +K + + + Sbjct: 137 ILKNVVVGLQNSIDVEELVENKQYIGCGHNMFNLDAFEVVGNSIKIFPATRLNLELVKSD 196 Query: 460 FVEGEPSQEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLM 518 + + F + + ++ + + + + L K +R + + G +GKS + Sbjct: 197 VITEKTPPHFNRYMLEFANFDSDLQYFLFQHIAVLLTANTKYRRALLLYGGAKNGKSVFI 256 Query: 519 NLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEIN--AA 576 NL++ F ++ +++ +++ L+G +++ E E+ Sbjct: 257 NLVRSFFYSEDIVSKALNELQG---------RFDKESLVGKKLMASDEIGESRIQEKIVN 307 Query: 577 KIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD-DAWWRRYIVIPFDKP 635 +K++ + + G T E+ N L + A RR VIP + Sbjct: 308 DLKKLVSVEPVHVDRK-GKTQVETTLDLKLAFGTNARLNFPSAHAKALERRIAVIPCEYY 366 Query: 636 IANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQ 688 + D +KL+ E + + K + ++ + + + Sbjct: 367 VEKADPDLIEKLQ-DEKKEIFLYLMYVYKQIVKNDIEYLQNDRVTEISHDWLN 418 >gi|113927238|emb|CAL22882.1| hypothetical protein ZH07 [Staphylococcus aureus] Length = 539 Score = 101 bits (251), Expect = 5e-19, Method: Composition-based stats. Identities = 51/364 (14%), Positives = 115/364 (31%), Gaps = 23/364 (6%) Query: 334 YKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR 393 Y L ++ + + ++F + Sbjct: 70 YSYFGIKKNPNDTVLMEMMIKVF-HIKRFNSELFIFKVNGWQKINGDELQGLISKMIQVL 128 Query: 394 QNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLET----GQKVKPTKE 449 + + + ST +++ G S + L + R++G + + DL T + + Sbjct: 129 --LVDYKPSLSTLKNVVDGLQKSTDVEELVENERYIGCGENMFDLNTFQVVKNSIDIFPK 186 Query: 450 LYITKSTGTPFVEGEPSQE-FLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIR 507 + S T V + F + +++ + + + L K +R + + Sbjct: 187 TRLNLSLSTNDVITDKIPPYFKQYMLQLANYDDDLQYFLFQHTAVLLTADTKYRRGLILY 246 Query: 508 GVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISET 567 G +GKS + L+K F + +++ +++ L+G RI+ E Sbjct: 247 GGAKNGKSVYIELVKSFFYSNDIVSKTLNELGG---------RFDKESLIGKRIMASDEV 297 Query: 568 NENDEINAAK--IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD-DAWW 624 + + A K++ + + A G T E N L + A Sbjct: 298 GKANIDEATVNDFKKLLSVEPIHADRK-GRTQVEVTLDLKLIFNTNAVLNFPSSHAKALE 356 Query: 625 RRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKE 684 RR VIP + + D +KL+ E + + K + ++ + + Sbjct: 357 RRIAVIPCEYYVEKADPDLIEKLQ-DEKKEIFLYLMYVYKQIVKNDIEYLQNDRVTEISH 415 Query: 685 EERQ 688 + Sbjct: 416 DWLN 419 >gi|213028477|ref|ZP_03342924.1| bacteriophage P4 DNA primase [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 389 Score = 101 bits (251), Expect = 5e-19, Method: Composition-based stats. Identities = 38/189 (20%), Positives = 64/189 (33%), Gaps = 18/189 (9%) Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478 R +G ++G+LD TG K ++ F + F + Sbjct: 209 RRLIGFRNGVLDTATGTFSPHHKSHWLRTLCDVDFTSPVEGETLETHAPHFWRWLDRAAG 268 Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537 E D + M L Q F+ + G GGSGKS L + G +A Sbjct: 269 GKPEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNATSATIET 328 Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597 + R L+G ++ + + + A +K +TGGD ++ Y + Y Sbjct: 329 LESPR---------ERAALIGFSLIRLPDQEKWSGDGAG-LKAITGGDAVSVDPKYKDAY 378 Query: 598 SESPASFTP 606 S + Sbjct: 379 STHIPAVIL 387 >gi|168032222|ref|XP_001768618.1| predicted protein [Physcomitrella patens subsp. patens] gi|162680117|gb|EDQ66556.1| predicted protein [Physcomitrella patens subsp. patens] Length = 330 Score = 101 bits (251), Expect = 6e-19, Method: Composition-based stats. Identities = 41/273 (15%), Positives = 93/273 (34%), Gaps = 34/273 (12%) Query: 442 QKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFT-----RCVGMALLG 496 EL +K + + + + + +++D+ + + G Sbjct: 51 CVCPKNPELITSKIFCVIYDDKFITDVCESYMETIEPATKIIDFIQSSDNRKKMMYTCAG 110 Query: 497 GNKAQRFIHI-------RGVGGSGKSTLMNLIKYA-FGNQYVINAEASDIMQNRPPEAGK 548 + F + G+ + + + + ++ S + + EA Sbjct: 111 MLYKEGFEELLDSKRDVIGMKSGVYNFTEDRFRMMELDDYITLSTRISFVPLDYNSEATN 170 Query: 549 ANPSL----IRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604 L L G I ++ E +E +++N + +K++TG D + R Y P + Sbjct: 171 EVLDLLAKLAMLKGRLIALVQEPDEGNKLNLSVMKEITGNDSLYVRGLYKEGTI-IPQTA 229 Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN-------------RDASFAQKLETKY 651 ++ N+ + D A W R ++PF + +D +F+ K+ + Sbjct: 230 KFILIANRIPQMSMFDKAVWSRIRIMPFVSTFVDKIELSHDLLTTHLKDINFSNKIHF-F 288 Query: 652 TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKE 684 K ++ K Y++ GL + P E Sbjct: 289 APVFMKLVIEEYKQYLTYGL--EEPNEVKDCTE 319 >gi|313576825|gb|ADR67001.1| bacteriophage P4 DNA primase [Klebsiella pneumoniae subsp. pneumoniae] Length = 271 Score = 101 bits (250), Expect = 6e-19, Method: Composition-based stats. Identities = 51/290 (17%), Positives = 92/290 (31%), Gaps = 51/290 (17%) Query: 492 MALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANP 551 M L Q F+ + G GGSGKS L + G +A + R Sbjct: 1 MVLANRYDWQLFLDVTGTGGSGKSILAEIATLLAGEDNATSATIETLESPR--------- 51 Query: 552 SLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPN 611 L+G ++ + + ++ A +K +TGGD ++ Y + YS V N Sbjct: 52 ERAALIGFPLIRLPDQDKWSGDGAG-LKAITGGDAVSVDPKYRDAYSAYIP-AVILAVNN 109 Query: 612 KHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEAKKWFLKGVKAYISK 669 + N RR ++I F + I RD K+ + ++ Sbjct: 110 NPMRFTNRSGGVSRRRVIIHFPEQIAPEERDPQLRDKIAR-ELAVIVRQLMQ-------- 160 Query: 670 GLDVDIPEVCLKAKEEE---------RQGTDTYQAW---IDDCCDIGENL--------WE 709 P + + ++ D + +++ + G + Sbjct: 161 --RFRDPMTARTLLQSQQNSDEALSIKRDADPTFDFCGYLEELPEPGGMYMGNANIVPRQ 218 Query: 710 ESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKE 759 L +Y Y E T++L + KG +KR + E Sbjct: 219 PRLYLYHAYLVYMEAHG-------YKNTLSLTMFGKGLSSMLKRVRPELR 261 >gi|228475608|ref|ZP_04060326.1| conserved hypothetical protein [Staphylococcus hominis SK119] gi|228270390|gb|EEK11825.1| conserved hypothetical protein [Staphylococcus hominis SK119] Length = 535 Score = 100 bits (249), Expect = 8e-19, Method: Composition-based stats. Identities = 58/384 (15%), Positives = 122/384 (31%), Gaps = 34/384 (8%) Query: 322 GHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSM-------KEDVFDLSEEPE 374 + T Y+ +N+Y + +K + + + + + +F S+E Sbjct: 52 EELNFEISTDINYR---SNIYGYYGIKNKPKDTDLVQMATQILNVKRFESKLFMFSKEGW 108 Query: 375 DNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDG 434 +S+ T + + + +S +S+ G S D L R++G Sbjct: 109 QKLDDSELRSIVRKTIQVI--LIDYTPTQSELKSVIDGMKESADIDKLVEDERYIGCHRY 166 Query: 435 ILDLETGQKVKPTKELYITKSTGTPFVEGEPS-----QEFLDLVSGYFE-SEEVMDYFTR 488 + DLE Q + +++ + + F +S +++ + + Sbjct: 167 LFDLEQFQVTNNSIDIFPKTRLDVELDKSDSITSSIPPHFDKYISELANFDDDLRYFLMQ 226 Query: 489 CVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGK 548 + L K +R + G +GKS + L++ F Q V++ +++ Sbjct: 227 HTAVLLTSNRKLRRGLIFYGTANNGKSVYIKLMRAFFYRQDVVSKTLNELGG-------- 278 Query: 549 ANPSLIRLMGSRIVIISETNENDEINA---AKIKQMTGGDCMTARLNYGNTYSESPASFT 605 L+G R++ E + I+ K++ + + G E Sbjct: 279 -RFDKESLIGKRLMASDEIGK-ARIDEKTVNDFKKLLSVEPIHVDRK-GRRQVEVTLDLK 335 Query: 606 PFIVPNKHLFVRNPD-DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVK 664 N L A RR VIP D + D KL + + K Sbjct: 336 LLFNTNAVLNFPPEHAKALERRIAVIPCDYYVEKADIDLNDKL-KSEKKHIFLYLMYVYK 394 Query: 665 AYISKGLDVDIPEVCLKAKEEERQ 688 + +D E + + Sbjct: 395 QMMIDDIDRIENEKVTELTHDWLN 418 >gi|254432090|ref|ZP_05045793.1| Pas55 [Cyanobium sp. PCC 7001] gi|197626543|gb|EDY39102.1| Pas55 [Cyanobium sp. PCC 7001] Length = 1757 Score = 100 bits (249), Expect = 8e-19, Method: Composition-based stats. Identities = 52/364 (14%), Positives = 108/364 (29%), Gaps = 34/364 (9%) Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF---ES 479 D + +G +L T + + E T + ++ G L V + Sbjct: 385 DVPPPVVVFGNGTFNLRTRRLEPHSPEHGATYAVDADYLPGAGCPAALQRVIETCYPEGA 444 Query: 480 EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIM 539 E ++ R + + + H G G+GK L+ + S Sbjct: 445 EPIIRAELRWL---IDPSVRYGEVFHHLGDTGTGKGLLVEFLSSLL--------PPSLQA 493 Query: 540 QNRPPEAGKANPSLIRL-MGSRIVIISETNENDEIN--AAKIKQMTGGDCMTARLNYGNT 596 P + L ++ G R++ + + + ++ TAR Y Sbjct: 494 TAAHPASLDTPEKLHQIVRGRRLLQFPDCPARLRNSGHSGLFYELVENKPQTARRLYSAE 553 Query: 597 YSESPA-SFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLE--TKY-- 651 E+ + I L + D + RR + + + + D L T Sbjct: 554 AEEARPFNVRCIIASVAPLQFSDGRDGFLRRCLTLQTLQRSGDPDPMLRSDLIGSTPEHR 613 Query: 652 --TLEAKKWFLKGVKAYISKGLDVDIPE-VCLKAKEEERQGTDTYQAWIDDCCD---IGE 705 +A W + + L + PE + + E D+ + D C +G Sbjct: 614 VIRSQAVSWAMSMPTFELEAILSKNDPEGLLRLGEAEAAAAGDSVSQFADACLVPHPLGP 673 Query: 706 NLWEESHSL---AKSYSEYREQELNYDRKRISTRTVTLNLKQ-KGFIGGIKREKIEKEWK 761 + + L ++Y + + + L++ G + R K +E Sbjct: 674 DAEVDEADLGQMFEAYRGWCKYAG--VEHAMQLSNFRGQLRRVLGPGRCLPRRKESREEA 731 Query: 762 SKRI 765 + Sbjct: 732 KAQG 735 >gi|290343635|ref|YP_003495002.1| hypothetical protein OTV1_163 [Ostreococcus tauri virus 1] gi|260161050|emb|CAY39751.1| hypothetical protein OTV1_163 [Ostreococcus tauri virus 1] Length = 647 Score = 100 bits (249), Expect = 8e-19, Method: Composition-based stats. Identities = 51/459 (11%), Positives = 132/459 (28%), Gaps = 54/459 (11%) Query: 350 KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSL 409 + ++ F + + + + W N R + + ++ L Sbjct: 201 EEIRTVEGHRTRAWRPKFTIEQFVYSLAQKDDNFEVWKNFTSRGTVFRD--VIDNMSKCL 258 Query: 410 EAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF 469 +A + ++G+ + + + F +P+ Sbjct: 259 DAQFP------EITKRRHVWSFKNGVFVGKEWIPDRGVYDCCFYSYDSQEFRCLDPTIIA 312 Query: 470 LDLVSGYFESEEVMDYFTR--------------------CVGMALLGGNK--------AQ 501 F+ ++ + + G Q Sbjct: 313 CKYFDQQFDDFSHLENWQDIPTPWFDSVLKYQKFEDEVCHWAYVMGGRLCFDVGELDGWQ 372 Query: 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRI 561 +G+ SGKSTL+ + F + +++I + L + + + Sbjct: 373 VIPFFKGIARSGKSTLITKVFKKFYENEDVGTLSNNIEKKFG---------LSAIKDAFM 423 Query: 562 VIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDD 621 I E + + A+ + M G+ ++ + T + + N+ ++ Sbjct: 424 FIAPEVKGDLALEQAEFQSMVSGEDVSVAVKNK-TAVSIEWNVPGVLGGNEVPNWKDNSG 482 Query: 622 AWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVK----AYISKGLDVDIPE 677 + RR + F K + + D +KL +K Y K + +PE Sbjct: 483 SVLRRILPWNFSKQVRDADPQLDEKLNR-ELPIILLKCVKAYLDYSNKYRDKDIWNVVPE 541 Query: 678 VCLKAKEEERQGTDTYQAWIDD-CCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTR 736 K +++ T +++ G+ L+ + ++++ + N + + + Sbjct: 542 YFKKIQKQVAMVASTLHNFLESTNIVFGKELFVPQTLFIQVFNQHCQAN-NLGKPKFNPD 600 Query: 737 TVTLNLKQKGFIGGIKREKIEKEWKSKR-IIKGLKLKPA 774 + + + K+ II GL + Sbjct: 601 FYAGPFSSRDIEVREEVVTYKGRTYPKQPIIYGLDVVEE 639 >gi|70725056|ref|YP_251970.1| hypothetical protein SH0055 [Staphylococcus haemolyticus JCSC1435] gi|67003802|gb|AAY60815.1| hypothetical protein [Staphylococcus aureus] gi|68445780|dbj|BAE03364.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] gi|166197602|dbj|BAG06211.1| hypothetical protein [Staphylococcus aureus] gi|221148482|gb|ACL99843.1| hypothetical protein [Staphylococcus pseudintermedius] gi|238768514|dbj|BAH66826.1| hypothetical protein [Staphylococcus aureus] gi|283469276|emb|CAQ48487.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus ST398] Length = 538 Score = 100 bits (249), Expect = 8e-19, Method: Composition-based stats. Identities = 46/340 (13%), Positives = 110/340 (32%), Gaps = 22/340 (6%) Query: 358 FLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSI 417 + ++F ++ + + + + ST +++ G S Sbjct: 92 HIKRFDSELFVFKDKGWQKVSEDELQGLISKMIQVL--LVDYKPSLSTLKNVVDGIQKST 149 Query: 418 TSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPS-----QEFLDL 472 + L +++G + +L+T + V E++ + F Sbjct: 150 DIEKLVEHRQYIGCGRNMFNLKTFKVVDNDLEIFPKTRLDLELDINDTITDKIPPNFKQY 209 Query: 473 VSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVI 531 + ++ + + + + L K +R + + G +GKS + L+K F + ++ Sbjct: 210 MLELANYDHDLQYFLFQHMAVLLTADTKLRRGLFLYGTAKNGKSVYIKLVKSFFYSNDIV 269 Query: 532 NAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK--IKQMTGGDCMTA 589 + +++ L+G RI+ E + + A K++ + + A Sbjct: 270 SKTLNELGG---------RFDKESLIGKRIMASDEVGKANIDEATVNDFKKLLSVEPIHA 320 Query: 590 RLNYGNTYSESPASFTPFIVPNKHLFVRNPD-DAWWRRYIVIPFDKPIANRDASFAQKLE 648 G T E N L + A RR VIP + + D +KL+ Sbjct: 321 DRK-GRTQVEVTLDLKLIFNTNAVLNFPSSHAKALERRIAVIPCEYYVEKADPDLIEKLQ 379 Query: 649 TKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQ 688 E + + K + ++ + + + Sbjct: 380 -DEKKEIFLYLMYVYKQIVKNDIEYLQNDRVTEISHDWLN 418 >gi|160932537|ref|ZP_02079927.1| hypothetical protein CLOLEP_01375 [Clostridium leptum DSM 753] gi|156868496|gb|EDO61868.1| hypothetical protein CLOLEP_01375 [Clostridium leptum DSM 753] Length = 1383 Score = 100 bits (249), Expect = 9e-19, Method: Composition-based stats. Identities = 62/350 (17%), Positives = 121/350 (34%), Gaps = 30/350 (8%) Query: 447 TKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKA-QRFIH 505 K+ Y +K P EG + L+S + EE +G + G +K Q+F+ Sbjct: 122 NKKDYASKRLNYPLEEGAT-DAWNKLMSTIYSEEE-RTKIEWAIGSIVCGESKKLQKFMV 179 Query: 506 IRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIIS 565 + G G+GKST++N+++ F Y + + + + +L + +V I Sbjct: 180 LYGAAGTGKSTVLNIVQQLFEGYYSV-------FDAKALGSSSNSFALEAFKTNPLVAIQ 232 Query: 566 ETNENDEI-NAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWW 624 + I + ++ + + MT + +TY+ F+ NK + + + Sbjct: 233 HDGDLSRIEDNTRLNSLVSHELMTVNEKFKSTYAN-RFKCFLFMGTNKPVKITDAKSGLI 291 Query: 625 RRYIVI-PFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAK 683 RR I + P ++ ++ K + D IP L A Sbjct: 292 RRLIDVSPSGNKLSPKEYKAVTKQIEFELGAIAYHCQEVYLE-NPGRYDDYIPVTMLGAS 350 Query: 684 EE-ERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNL 742 + D+Y + + G L + Y Y ++ S R L Sbjct: 351 NDFYNFIIDSYHVFKKED---GTTLKASW----EMYKTYCDEAK--VTFPFSQRIFKEEL 401 Query: 743 KQKGFIGGIKREKIEKEWKSKRIIKGLKL-----KPAFESVDDNSNIIDF 787 K F +R ++ + + G + K E + +I+F Sbjct: 402 KN-YFRDYKERFNLDDGTRVRSYYIGFRTEKFEDKTLTEQDEPEHKLIEF 450 >gi|153810985|ref|ZP_01963653.1| hypothetical protein RUMOBE_01376 [Ruminococcus obeum ATCC 29174] gi|149832873|gb|EDM87956.1| hypothetical protein RUMOBE_01376 [Ruminococcus obeum ATCC 29174] Length = 196 Score = 100 bits (249), Expect = 9e-19, Method: Composition-based stats. Identities = 30/172 (17%), Positives = 49/172 (28%), Gaps = 9/172 (5%) Query: 7 KEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKL----PACGFGFVCGVGE 62 KE A G + PL DK P +G + I++ P G G Sbjct: 2 KEWALHYAEMGLAVFPLVCRDKVPAVVGGCKVATTERTTIERWWDKNPQYNIGIATGNKS 61 Query: 63 QPLYAFDIDS---KDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTT 119 L D+D K + +D P + + + Sbjct: 62 SGLVVIDLDVDKNKGIDGYDVLRDWQNKHGKLPETWQSITGRGGYHYFYKDAIVH--SNR 119 Query: 120 ESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVE 171 +DI G G Y VA Y W P +++ + + ++ Sbjct: 120 VGLYEGVDIRGEGGYIVAPPSVHPNGNIYEWEQGPEEYEIAQVDNIVNDFLK 171 >gi|49257044|dbj|BAD24833.1| hypothetical protein [Staphylococcus aureus] Length = 547 Score = 100 bits (248), Expect = 1e-18, Method: Composition-based stats. Identities = 53/365 (14%), Positives = 113/365 (30%), Gaps = 25/365 (6%) Query: 334 YKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR 393 Y L ++ + + ++F + Sbjct: 70 YSYFGIQKKPNDTVLMEMMIEVF-HIKRFNSELFVFKANGWQKINKDELQGLVSKMIQVL 128 Query: 394 QNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYIT 453 + S +ST +++ G S + L +++G + +L T + VK +++ Sbjct: 129 FIDYKPS--QSTLRNVVDGLQKSTDVEELVEDKQYIGCGPNMFNLNTFEVVKNCIDIFPK 186 Query: 454 KSTGTPFVEGEPSQE-----FLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIR 507 +G+ E F + ++ + + + L K +R + + Sbjct: 187 TRLNIEIDKGDVINENIPDHFSKYMLELANFDTDLKHFLIQHTAILLTANTKLRRGLILH 246 Query: 508 GVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISET 567 G +GKS + L+K F VI+ +++ L+G R++ E Sbjct: 247 GAANNGKSVYIKLLKSFFHQNDVISKTLNELGG---------RFDKESLIGKRLMASDEI 297 Query: 568 NENDEINAAK---IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD-DAW 623 E IN K++ + + G T E N L + A Sbjct: 298 GE-ARINEKVVNDFKKLLSVEPIHVDRK-GQTQVEVTLDLKLIFNTNAVLNFPSEHAKAL 355 Query: 624 WRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAK 683 RR VIP + + D +KL+ E + + K + ++ + + Sbjct: 356 ERRIAVIPCEYYVEKADPDLIEKLQ-DEKKEIFLYLMYVYKQIVKNDIEYLQNDRVTEIS 414 Query: 684 EEERQ 688 + Sbjct: 415 HDWLN 419 >gi|313768154|ref|YP_004061585.1| hypothetical protein BpV1_155c [Bathycoccus sp. RCC1105 virus BpV1] gi|312599761|gb|ADQ91782.1| hypothetical protein BpV1_155c [Bathycoccus sp. RCC1105 virus BpV1] Length = 650 Score = 100 bits (248), Expect = 1e-18, Method: Composition-based stats. Identities = 60/453 (13%), Positives = 132/453 (29%), Gaps = 55/453 (12%) Query: 364 EDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLD 423 + + + E + W N R N + + I Sbjct: 216 KQIETIQEYVYGVAQKETRYELWKNLSSRGSA--YNDVIRHLTHCKDMQFPEII------ 267 Query: 424 SSSRFLGEQDGIL--------------DLETGQKVKP---TKELYITKSTGTPFVEGEPS 466 + ++GI + T + + + + K F E Sbjct: 268 KNRHVWSFKNGIFIGKEWSAQTGLYESNFYTYESREFKNLDQTIVSCKYFDKEFTNYEDL 327 Query: 467 QEFLD----LVSGYFE----SEEVMDYFTRCVGMALLGGN---KAQRFIHIRGVGGSGKS 515 + + D E V + G G N Q ++G+ SGKS Sbjct: 328 ENWYDIPTPFFQSVLEYQKFDSNVSKWMYVMGGRLCFGVNDIDTWQIIPFLKGIARSGKS 387 Query: 516 TLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA 575 TL+ + F N + ++++ + L + + + I E + ++ Sbjct: 388 TLITKVFRKFYNADDVRTLSNNVEKKFG---------LSSIYDAFMFIAPEVKGDLQLEQ 438 Query: 576 AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP 635 A+ + + G+ ++ + + + + N+ ++ + RR + F K Sbjct: 439 AEFQSIVSGEDVSIAVKHEKA-KSFEWTTPGILGGNEVPNWKDNSGSVLRRILTWNFGKQ 497 Query: 636 IANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDI----PEVCLKAKEEERQGTD 691 + + D + KL+ + ++ Y K D DI PE +++ Sbjct: 498 VKDADPTLEYKLD-SELPVILQKCIRAYLEYAQKYADRDIWNVVPEYFKTVQKQVATVAS 556 Query: 692 TYQAWIDDC-CDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGG 750 T + ++ G++L ++ + + N + R + Q+ Sbjct: 557 TLENFMQSTGVKYGKDLCCPQKDFVALFNSHCQAN-NLGKPRFTQDFYVGPFSQRDIEVR 615 Query: 751 IKREKIEKEWKSKR--IIKGLKLKPAFESVDDN 781 K R I GL + N Sbjct: 616 EINNLTYKGRVCPRQPFIFGLDIVDEQSIQYSN 648 >gi|163955160|ref|YP_001648264.1| hypothetical protein OsV5_188r [Ostreococcus virus OsV5] gi|163638609|gb|ABY27968.1| hypothetical protein OsV5_188r [Ostreococcus virus OsV5] Length = 647 Score = 100 bits (248), Expect = 1e-18, Method: Composition-based stats. Identities = 51/459 (11%), Positives = 132/459 (28%), Gaps = 54/459 (11%) Query: 350 KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSL 409 + ++ F + + + + W N R + + ++ L Sbjct: 201 EEIRTVEGHRTRAWRPKFTIEQFVYSLAQKDDNFEVWKNFTSRGTVFRD--VIDNMSKCL 258 Query: 410 EAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF 469 +A + ++G+ + + + F +P+ Sbjct: 259 DAQFP------EITKRRHVWSFKNGVFVGKEWIPDRGVYDCCFYSYESQEFRCLDPTIIA 312 Query: 470 LDLVSGYFESEEVMDYFTR--------------------CVGMALLGGNK--------AQ 501 F+ ++ + + G Q Sbjct: 313 CKYFDQQFDDFSHLENWQDIPTPWFDSVLKYQKFEDEVCHWAYVMGGRLCFDVGELDGWQ 372 Query: 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRI 561 +G+ SGKSTL+ + F + +++I + L + + + Sbjct: 373 VIPFFKGIARSGKSTLITKVFKKFYENEDVGTLSNNIEKKFG---------LSAIKDAFM 423 Query: 562 VIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDD 621 I E + + A+ + M G+ ++ + T + + N+ ++ Sbjct: 424 FIAPEVKGDLALEQAEFQSMVSGEDVSVAVKNK-TAVSIEWNVPGVLGGNEVPNWKDNSG 482 Query: 622 AWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVK----AYISKGLDVDIPE 677 + RR + F K + + D +KL +K Y K + +PE Sbjct: 483 SVLRRILPWNFSKQVRDADPQLDEKLNR-ELPIILLKCVKAYLDYSNKYRDKDIWNVVPE 541 Query: 678 VCLKAKEEERQGTDTYQAWIDD-CCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTR 736 K +++ T +++ G+ L+ + ++++ + N + + + Sbjct: 542 YFKKIQKQVAMVASTLHNFLESTNIVFGKELFVPQTLFIQVFNQHCQAN-NLGKPKFNPD 600 Query: 737 TVTLNLKQKGFIGGIKREKIEKEWKSKR-IIKGLKLKPA 774 + + + K+ II GL + Sbjct: 601 FYAGPFSSRDIEVREEVVTYKGRTYPKQPIIYGLDVVEE 639 >gi|41057131|ref|NP_957845.1| ORF068 NTPase [Orf virus] gi|41018688|gb|AAR98293.1| ORF068 NTPase [Orf virus] Length = 787 Score = 99.6 bits (246), Expect = 2e-18, Method: Composition-based stats. Identities = 49/290 (16%), Positives = 87/290 (30%), Gaps = 45/290 (15%) Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFV-------EGEPSQ 467 + D+ L +G+LDL TG+ + + + T + S+ Sbjct: 399 MLVDISETDTQYDKLPFTNGVLDLATGEFLTGDRAKACVCTVSTGYAFSREEFAAAADSE 458 Query: 468 EFLDL---VSGYFES----EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNL 520 L ++ E + R + AL G K + G +GKST L Sbjct: 459 AMRRLVGVINDIQPDTPENAENRALYERAMSSALCGATK-TVIVFFYGDTMTGKSTSKRL 517 Query: 521 IKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN-----DEINA 575 + A G ++ + NP + + R V SE + ++ + Sbjct: 518 LMSALGGLFIETGQTVLTD----VLDKGPNPFVANMHLRRAVFCSELPDFACNNARKLRS 573 Query: 576 AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP 635 K++T C+ R + N T I N D+A RR ++ F Sbjct: 574 DNFKKLT-EPCIVGRPCFSNKIHN-RNHATFIIDTNYRPVFDRVDNALMRRVALVRFRTH 631 Query: 636 I------------------ANRDASFAQKLETKY-TLEAKKWFLKGVKAY 666 D S K++ Y + ++ Y Sbjct: 632 FSSAATRAAAAHNVEYSAVKEMDESLDTKIQRNYFRYAFLRLLVQWFGKY 681 >gi|325073819|gb|ADY76872.1| PP212 [Orf virus] Length = 787 Score = 99.2 bits (245), Expect = 2e-18, Method: Composition-based stats. Identities = 49/290 (16%), Positives = 86/290 (29%), Gaps = 45/290 (15%) Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFV-------EGEPSQ 467 + D+ L +G+LDL TG+ + + + T + S+ Sbjct: 399 MLVDISETDTQYDKLPFTNGVLDLATGEFLTGDRAKACVCTVSTGYAFSREEFAAAADSE 458 Query: 468 EFLDL---VSGYFES----EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNL 520 L + E + R + AL G K + G +GKST L Sbjct: 459 AMRRLVGVIDDIQPDTPENAENRALYERAMSSALCGATK-TVIVFFYGDTMTGKSTSKRL 517 Query: 521 IKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN-----DEINA 575 + A G ++ + NP + + R V SE + ++ + Sbjct: 518 LMSALGGLFIETGQTVLTD----VLDKGPNPFVANMHLRRAVFCSELPDFACNNARKLRS 573 Query: 576 AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP 635 K++T C+ R + N T I N D+A RR ++ F Sbjct: 574 DNFKKLT-EPCIVGRPCFSNKIHN-RNHATFIIDTNYRPVFDRVDNALMRRVALVRFRTH 631 Query: 636 I------------------ANRDASFAQKLETKY-TLEAKKWFLKGVKAY 666 D S K++ Y + ++ Y Sbjct: 632 FSSSATRAAAAHNVEYSAVKEMDESLDTKIQRNYFRYAFLRLLVQWFGKY 681 >gi|30230665|gb|AAP21119.1| D5R-like protein [Orf virus] Length = 781 Score = 99.2 bits (245), Expect = 2e-18, Method: Composition-based stats. Identities = 49/290 (16%), Positives = 86/290 (29%), Gaps = 45/290 (15%) Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFV-------EGEPSQ 467 + D+ L +G+LDL TG+ + + + T + S+ Sbjct: 393 MLVDISETDTQYDKLPFTNGVLDLATGEFLTGDRAKACVCTVSTGYAFSREEFAAAADSE 452 Query: 468 EFLDL---VSGYFES----EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNL 520 L + E + R + AL G K + G +GKST L Sbjct: 453 AMRRLVGVIDDIQPDTPENAENRALYERAMSSALCGATK-TVIVFFYGDTMTGKSTSKRL 511 Query: 521 IKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN-----DEINA 575 + A G ++ + NP + + R V SE + ++ + Sbjct: 512 LMSALGGLFIETGQTVLTD----VLDKGPNPFVANMHLRRAVFCSELPDFACNNARKLRS 567 Query: 576 AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP 635 K++T C+ R + N T I N D+A RR ++ F Sbjct: 568 DNFKKLT-EPCIVGRPCFSNKIHN-RNHATFIIDTNYRPVFDRVDNALMRRVALVRFRTH 625 Query: 636 I------------------ANRDASFAQKLETKY-TLEAKKWFLKGVKAY 666 D S K++ Y + ++ Y Sbjct: 626 FSSSATRAAAAHNVEYSAVKEMDESLDTKIQRNYFRYAFLRLLVQWFGKY 675 >gi|282892588|ref|ZP_06300861.1| hypothetical protein pah_c272o027 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281497712|gb|EFB40081.1| hypothetical protein pah_c272o027 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 159 Score = 99.2 bits (245), Expect = 2e-18, Method: Composition-based stats. Identities = 30/164 (18%), Positives = 64/164 (39%), Gaps = 5/164 (3%) Query: 608 IVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYI 667 ++ N+ + + A RY+V+ +R+ + + W LKG+K Sbjct: 1 MMSNELPDLTDSSGALANRYLVLNLKTSWLHREDTGLLERLKMELSGILLWALKGLKRLN 60 Query: 668 SKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELN 727 G P+ L+ EE ++ + ++D+ C+ SL +++++ Sbjct: 61 ENG-HFIQPKASLETIEELKELSSPIMVFVDEVCNFEPKACTSIKSLFIAWNQWCTSNG- 118 Query: 728 YDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771 K+ +T++ + K F KR +E K + G+ L Sbjct: 119 --YKKGTTQSFGKSFKAA-FPEIKKRRLSFEEGKREWCYIGITL 159 >gi|313844134|ref|YP_004061797.1| hypothetical protein OlV1_165c [Ostreococcus lucimarinus virus OlV1] gi|312599519|gb|ADQ91541.1| hypothetical protein OlV1_165c [Ostreococcus lucimarinus virus OlV1] Length = 647 Score = 99.2 bits (245), Expect = 2e-18, Method: Composition-based stats. Identities = 50/452 (11%), Positives = 125/452 (27%), Gaps = 72/452 (15%) Query: 348 LDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQ 407 + SI F+ S+ + D W + R + + ++ Sbjct: 213 AWQPKFSIEQFIYSLAQKDDDFIT--------------WKHFTSRGSVFRD--VIDNLSK 256 Query: 408 SLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ 467 +A + ++G+ + + + F +P+ Sbjct: 257 CHDAQFP------EITKRRHVWSFKNGVFVGKEWIPDRGVYDCCFYPYDSREFRCLDPTI 310 Query: 468 EFLDLVSGYFESEEVMDYFTRC--------------------VGMALLGGNK-------- 499 F+ ++ + + G Sbjct: 311 IACKYFDQQFDDFSHVERWQDIPTPWFDSILKYQQFEDEVCNWAYVMGGRLCFDIGELDG 370 Query: 500 AQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGS 559 Q +G+ SGKSTL+ + F + +++I + L + S Sbjct: 371 WQIIPFFKGIARSGKSTLITKVFKKFYENEDVGTLSNNIEKKFG---------LSAIKDS 421 Query: 560 RIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNP 619 + I E + + A+ + M G+ ++ + T + + N+ ++ Sbjct: 422 FMFIAPEVKGDLALEQAEFQSMVSGEDVSVAVKNK-TAVSIEWTVPGVLGGNEVPNWKDN 480 Query: 620 DDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVK----AYISKGLDVDI 675 + RR + F K + + D +KL +K Y K + + Sbjct: 481 SGSVLRRILPWNFSKQVRDADPQLDEKLNR-ELPIILLKCIKAYLDYSNKYRDKDIWNVV 539 Query: 676 PEVCLKAKEEERQGTDTYQAWIDD-CCDIGENLWEESHSLAKSYSEYREQELNYDRKRIS 734 P+ K +++ T +++ G+ L+ + ++++ + + Sbjct: 540 PDYFKKIQKQVAMVASTLHNFLESTNIVFGKELFVPQKLFIQVFNQHCQANN------LG 593 Query: 735 TRTVTLNLKQKGFIGGIKREKIEKEWKSKRII 766 + F + E R+ Sbjct: 594 KPKFNQDFYAGPFSSRDIEVREEVVNYKGRVY 625 >gi|228475778|ref|ZP_04060496.1| conserved hypothetical protein [Staphylococcus hominis SK119] gi|228270560|gb|EEK11995.1| conserved hypothetical protein [Staphylococcus hominis SK119] Length = 539 Score = 98.8 bits (244), Expect = 3e-18, Method: Composition-based stats. Identities = 48/411 (11%), Positives = 124/411 (30%), Gaps = 28/411 (6%) Query: 287 FTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSL 346 T ++ ++ + +++ ++ +I K + Y Sbjct: 28 LTIPVNNNDEIEETAQGETVYNELIDQLRLNIPKDTDYRPNI-----YSYFGIKKNPNDT 82 Query: 347 TLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTA 406 L ++ + + ++F + + + + ST Sbjct: 83 VLMEMMIKVF-HIKRFNSELFVFKANGWQKINGDELQGLISKMIQVL--LVDYKPSLSTL 139 Query: 407 QSLEAGSIFSITSDLLDSSSRFLGEQDGILDLET----GQKVKPTKELYITKSTGTPFVE 462 +++ G S + L + ++G + + DL T + + + S T V Sbjct: 140 KNVVDGLQKSTDVEELVENEHYIGCGENMFDLNTFQVVKNSIDIFPKTRLNLSLSTNDVI 199 Query: 463 GEPSQE-FLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNL 520 + F + +++ + + + L K +R + + G +GKS + L Sbjct: 200 TDTIPPYFNQYMLQLANYDDDLQYFLFQHTAVLLTADTKYRRGLILYGGAKNGKSVYIEL 259 Query: 521 IKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEIN--AAKI 578 +K F ++ +++ +++ L+ ++ E ++ Sbjct: 260 VKSFFYSKDIVSKPLNELEG---------RFDKESLIDKSLMASHEIGQSRIQEKIVNDF 310 Query: 579 KQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD-DAWWRRYIVIPFDKPIA 637 K++ + M G T E N L A RR +IP + + Sbjct: 311 KKLLSVESMHVDRK-GKTQVEVILDLKLIFSTNAILNFPPEHAKALERRINIIPCEYYVE 369 Query: 638 NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQ 688 D S KL+ E + + + + ++ + + Sbjct: 370 KADTSLIDKLQ-SEKKEIFLYLMYVYQQIVKADIEYLENSRVTEITHDWLN 419 >gi|254417833|ref|ZP_05031557.1| Bifunctional DNA primase/polymerase, N-terminal family [Brevundimonas sp. BAL3] gi|196184010|gb|EDX78986.1| Bifunctional DNA primase/polymerase, N-terminal family [Brevundimonas sp. BAL3] Length = 590 Score = 98.8 bits (244), Expect = 3e-18, Method: Composition-based stats. Identities = 36/223 (16%), Positives = 54/223 (24%), Gaps = 30/223 (13%) Query: 17 GFKLIPLRLGDKRPQR---------------LGKWEEQ---LLSSEKIDKLP-----ACG 53 G + PL DKRP L WE + + D+ P Sbjct: 14 GIAVFPLMPRDKRPYGGTPGLHGATKDPALVLAWWEGRKALPPKPDATDRRPVFAGSMAN 73 Query: 54 FGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGI 113 G G + DID D A + + K + I F G Sbjct: 74 IGIATGQIS-GFWVLDIDGPDGAAALAALEAQHGPLPVTAEQSTGKGR-HILFAWPVAGE 131 Query: 114 KKKKTTEST----QGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEED 169 +T ++ +D+ G G Y VA + + Y W V P Sbjct: 132 IGDRTVRNSASKIGPGIDVRGDGGYIVAAPSIHPSGRPYEWAPGRGPVDVGFAP-APAWL 190 Query: 170 VEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITA 212 +E + + A Sbjct: 191 LELAAPPIVQSAPVQRVAIEGRATRYGEAALAGACRDVETAAA 233 >gi|314055246|ref|YP_004063584.1| hypothetical protein OtV2_151 [Ostreococcus tauri virus 2] gi|313575137|emb|CBI70150.1| hypothetical protein OtV2_151 [Ostreococcus tauri virus 2] Length = 483 Score = 98.8 bits (244), Expect = 3e-18, Method: Composition-based stats. Identities = 50/459 (10%), Positives = 132/459 (28%), Gaps = 54/459 (11%) Query: 350 KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSL 409 + ++ + F + + + W N R + + + + Sbjct: 37 EEIRTVEGHRTRAWQPKFTIEQFVYSLAQKDDDFITWKNFTSRGSVFRD--VIDNMTKCV 94 Query: 410 EAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF 469 +A + ++G+ + + + F +P+ Sbjct: 95 DAQFP------EITKRRHVWSFKNGVFVGKEWIPDRGVYDCCFYPYDSQEFRCLDPTIIA 148 Query: 470 LDLVSGYFESEEVMDYFTRC--------------------VGMALLGGNK--------AQ 501 F+ ++ + + G Q Sbjct: 149 CKYFDQQFDDFSHIERWQDIPTPWFDSVLKYQKFEDEVCNWAYVMGGRLCYDVGELDGWQ 208 Query: 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRI 561 +G+ SGKSTL+ + F + +++I + L + S + Sbjct: 209 VIPFFKGIARSGKSTLITKVFKKFYENEDVGTLSNNIEKKFG---------LSAIKDSFM 259 Query: 562 VIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDD 621 I E + + A+ + M G+ ++ + T + + N+ ++ Sbjct: 260 FIAPEVKGDLALEQAEFQSMVSGEDVSVAVKNK-TAVSIEWNVPGVLGGNEVPNWKDNSG 318 Query: 622 AWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVK----AYISKGLDVDIPE 677 + RR + F K + + D +KL +K Y +K + +PE Sbjct: 319 SVLRRILAWNFSKQVRDADPQLDEKLNR-ELPIILLKCVKAYLEYSNEYRNKDIWNVVPE 377 Query: 678 VCLKAKEEERQGTDTYQAWIDD-CCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTR 736 K +++ T +++ G+ L+ + ++++ + N + + + Sbjct: 378 YFKKIQKQVAMVASTLHNFLESTNIVFGKELFVPQKLFIQVFNQHCQAN-NLGKPKFNQD 436 Query: 737 TVTLNLKQKGFIGGIKREKIEKEWKSKR-IIKGLKLKPA 774 + + + K+ +I GL + Sbjct: 437 FYAGPFSSRDIEVREEVVNYKGRTYPKQPVIYGLDVVEE 475 >gi|183596366|ref|ZP_02958394.1| hypothetical protein PROSTU_00112 [Providencia stuartii ATCC 25827] gi|188023827|gb|EDU61867.1| hypothetical protein PROSTU_00112 [Providencia stuartii ATCC 25827] Length = 126 Score = 98.4 bits (243), Expect = 4e-18, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 51/118 (43%), Gaps = 12/118 (10%) Query: 654 EAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHS 713 W L GV+A+ ++G +P + A +E RQ +D ++ + C + + + + Sbjct: 3 GILNWALAGVQAWHTEGFKRSLPAAVIAANDEYRQESDLIGEFL-EGCRLEPDAYTAASD 61 Query: 714 LAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771 L ++ + + + R++ R T + ++GF + +K +G+ L Sbjct: 62 LYSAFLSFASEGNEW---RMTQRIFTKKMVERGFK--------KIRRNNKASFRGIAL 108 >gi|41018555|gb|AAR98163.1| ORF068 NTPase [Orf virus] Length = 787 Score = 98.4 bits (243), Expect = 4e-18, Method: Composition-based stats. Identities = 48/290 (16%), Positives = 86/290 (29%), Gaps = 45/290 (15%) Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFV-------EGEPSQ 467 + D+ L +G+LDL TG+ + + + T + S+ Sbjct: 399 MLVDISETDTQYDKLPFTNGVLDLATGEFLTGDRAKACVCTVSTGYAFSREEFAAAADSE 458 Query: 468 EFLDL---VSGYFES----EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNL 520 L + + + R + AL G K + G +GKST L Sbjct: 459 AMRRLVGVIDDIQPDTPENADNRALYERAMSSALCGATK-TVIVFFYGDTMTGKSTSKRL 517 Query: 521 IKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN-----DEINA 575 + A G ++ + NP + + R V SE + ++ + Sbjct: 518 LMSALGGLFIETGQTVLTD----VLDKGPNPFVANMHLRRAVFCSELPDFACNNARKLRS 573 Query: 576 AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP 635 K++T C+ R + N T I N D+A RR ++ F Sbjct: 574 DNFKKLT-EPCIVGRPCFSNKIHN-RNHATFIIDTNYRPVFDRVDNALMRRVALVRFRTH 631 Query: 636 I------------------ANRDASFAQKLETKY-TLEAKKWFLKGVKAY 666 D S K++ Y + ++ Y Sbjct: 632 FSSSATRAAAAHNVEYSAVKEMDESLDTKIQRNYFRYAFLRLLVQWFGKY 681 >gi|74230780|gb|ABA00585.1| NTPase [Orf virus] Length = 787 Score = 98.4 bits (243), Expect = 4e-18, Method: Composition-based stats. Identities = 48/290 (16%), Positives = 86/290 (29%), Gaps = 45/290 (15%) Query: 415 FSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFV-------EGEPSQ 467 + D+ L +G+LDL TG+ + + + T + S+ Sbjct: 399 MLVDISETDTQYDKLPFTNGVLDLATGEFLTGDRAKACVCTVSTGYAFSREEFAAAADSE 458 Query: 468 EFLDL---VSGYFES----EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNL 520 L + + + R + AL G K + G +GKST L Sbjct: 459 AMRRLVGVIDDIQPDTPENADNRALYERAMSSALCGATK-TVIVFFYGDTMTGKSTSKRL 517 Query: 521 IKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN-----DEINA 575 + A G ++ + NP + + R V SE + ++ + Sbjct: 518 LMSALGGLFIETGQTVLTD----VLDKGPNPFVANMHLRRAVFCSELPDFACNNARKLRS 573 Query: 576 AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP 635 K++T C+ R + N T I N D+A RR ++ F Sbjct: 574 DNFKKLT-EPCIVGRPCFSNKIHN-RNHATFIIDTNYRPVFDRVDNALMRRVALVRFRTH 631 Query: 636 I------------------ANRDASFAQKLETKY-TLEAKKWFLKGVKAY 666 D S K++ Y + ++ Y Sbjct: 632 FSSSATRAAAAHNVEYSAVKEMDESLDTKIQRNYFRYAFLRLLVQWFGKY 681 >gi|124378230|ref|YP_001029426.1| GfV-C21-ORF1 [Glypta fumiferanae ichnovirus] gi|124270637|dbj|BAF45562.1| GfV-C21-ORf1 [Glypta fumiferanae ichnovirus] Length = 574 Score = 98.4 bits (243), Expect = 4e-18, Method: Composition-based stats. Identities = 58/435 (13%), Positives = 131/435 (30%), Gaps = 40/435 (9%) Query: 309 DAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVF- 367 K + + K L K +Y N Y + L + N + Sbjct: 102 RDIRKVLLAETHK--LLAMKSGKDFYDDIHLNDYEFLLLYNHRYRRERNIIYHYNVTTKL 159 Query: 368 ----DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLD 423 D+ + + K + + +++V + + + + + L+ Sbjct: 160 WHELDMRKFNWHLSIFYKEILKRKASSHLQEHVPKKTVMINIRNIILDEGENVYCAGSLN 219 Query: 424 SSSRFLGEQDGILDLE--TGQKVKPTKELYITKSTGTPFVEG---EPSQEFLDLVSGYFE 478 S+ + + +D + K + G + + F Sbjct: 220 SNFQLFFTNNRTIDTSSIPPITRQIKKFDLAQTTCGWSYDPELSAAYHDSVELYFNKLFP 279 Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIR--GVGGSGKSTLMNLIKYAFGNQYVINAEAS 536 + D+F + L G + F+ + G G G +TL++L+ FG YV N Sbjct: 280 LKCERDWFLSFIARILNGKRDEELFVLLTDEGKGQCGITTLISLLSIVFGKYYVSN--TR 337 Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNT 596 ++ + + + + L R+++ + D +N IK +T +Y N+ Sbjct: 338 IVVDEKSQDNHYIHEGMYDLEKKRLLVADRLTKKDTLNCCVIKALTAESNHIIEWDYDNS 397 Query: 597 YSESPAS--FTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDAS-----------F 643 + + F + N D + R +V P ++ Sbjct: 398 HIKYALQTGFIMVVTDNNIPKFDKTDKHFRERMVVCPMRSRFVKQNFETVSMSKENINIH 457 Query: 644 AQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDI 703 ++ L + + IP+ + ++ + + D Sbjct: 458 IANKSLQHELSVWSSAVLDLLIKYYNTSVPTIPDSM----ADYKKR-------VYEYFDR 506 Query: 704 GENLWEESHSLAKSY 718 E+ ESH L++ + Sbjct: 507 PESHSNESHILSRRF 521 >gi|332088051|gb|EGI93176.1| hypothetical protein SB521682_2984 [Shigella boydii 5216-82] Length = 753 Score = 98.0 bits (242), Expect = 5e-18, Method: Composition-based stats. Identities = 82/637 (12%), Positives = 167/637 (26%), Gaps = 101/637 (15%) Query: 14 IHNGFKLIPLRL-GDKRPQRLGKWEEQLLSSEKIDKL---PACGFGFVCGVGEQPLYAFD 69 + + F P R G ++ + W +++ + P G G + A D Sbjct: 44 LSHNFGKTPCRYNGQRKVVGIPDWANYVVTENDFARWSNEPDYGICVRTG---DGVVALD 100 Query: 70 IDSKDEKTANTFKDTFEILHG--TPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLD 127 D D ++ G P K L ++ + K+ E ++ Sbjct: 101 CDINDAGMQEIVRNIILSCLGELPPRRWRADSHKCLYLIAVDGDYRKRGHRLEGENKQIE 160 Query: 128 ILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKD 187 +L GQ FVA HP + W ++ ++ E +E L++ + Sbjct: 161 LLAKGQQFVACGTHPA-GERIQWDCGLPGEPLK----ITSEQLESLWQRLADNLPVKDSY 215 Query: 188 KKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPV-VMAVHHETRGSSKG 246 + LSC +W+ + + GS Sbjct: 216 TAGAGRQRD-----------------LSCVDPS-ATDDVADWLDANGWTLSVSSDGSRNL 257 Query: 247 KEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASR 306 K S Y F K F + GL + Sbjct: 258 KPFRDE-----SEYSNGCSETSIKYF--------PKGTGGFEQGHFKSMHNTDAGLTDAD 304 Query: 307 FSD--AYNKAMFSIY-----KKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFL 359 + + Y +++F +T + +Y+ D++ Sbjct: 305 WLEGYGYTQSLFEDLTVVEDGDKPEFTDINTDMTAHFLERFIYVIEG--DQVCDLSRPPY 362 Query: 360 VSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITS 419 M + + + T + + K A++ Sbjct: 363 QCMMDMKSFKNLMAPYQFPPEGKGQPTPATKRWIE-----HRHKKIAETTGYKPGAGRII 417 Query: 420 DLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFES 479 + D G ++ + + +K + FL+ ++ Sbjct: 418 ERFD----------GRFEINEFYMPEHPRTADTSKVS-----------TFLNHMAYLVPD 456 Query: 480 EEVMDYFTRCVGMALLG--GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537 ++F +G + +H+ G+G+ + L++ G Sbjct: 457 AWQREFFIARLGWMVQRPERRCPISILHVATAHGTGRGWVSQLMERVLGPWNCARTRMKI 516 Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA--AKIKQMTGGDCMTARLNYGN 595 + N+ + L + + I E END+ KI+ + YG+ Sbjct: 517 LCDNQFHD---------YLYNTLLCTIDEVRENDKRYEVNDKIRDVLTEPRFEVNRKYGS 567 Query: 596 TYSESPASFTPFIVPNKH--LFVRNPDDAWWRRYIVI 630 N L + D RR V+ Sbjct: 568 K-KTMDIYTGFLFYTNHFDALALPEED----RRIAVL 599 >gi|291335538|gb|ADD95149.1| hypothetical protein [uncultured phage MedDCM-OCT-S04-C491] gi|291335654|gb|ADD95261.1| hypothetical protein [uncultured phage MedDCM-OCT-S04-C846] Length = 185 Score = 98.0 bits (242), Expect = 5e-18, Method: Composition-based stats. Identities = 23/143 (16%), Positives = 44/143 (30%), Gaps = 9/143 (6%) Query: 45 KIDKLPA-CGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKIL 103 + + P G G+ + D+D + L PI+ + Sbjct: 29 AVKRNPDLQAVGVFTGIRGNGIVILDVD---RNLSKYLNAWGSSLDNAPIITSTKTNAAK 85 Query: 104 IPFRMNKEGIKKKKT---TESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVE 160 FR+ +E K + G +IL G+ V Y +P K + + Sbjct: 86 YLFRVPEELWADVKGHGLRKEDGGDYEILW-GRQGVVYGAYPG-GKVSKPGQYRLQGDLT 143 Query: 161 DTPLLSEEDVEYLFKFFQEITVP 183 D P + + + + + I Sbjct: 144 DIPTAPDWLLAEMRQPPRSINKK 166 >gi|312599305|gb|ADQ91328.1| hypothetical protein BpV2_161c [Bathycoccus sp. RCC1105 virus BpV2] Length = 648 Score = 98.0 bits (242), Expect = 5e-18, Method: Composition-based stats. Identities = 57/445 (12%), Positives = 131/445 (29%), Gaps = 54/445 (12%) Query: 364 EDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLD 423 + V + + + W N R N + + I Sbjct: 216 KQVETIQDYVYGVAQKETRYELWKNLSSRGSA--YNDVIRHLTHCKDMQFPEII------ 267 Query: 424 SSSRFLGEQDGIL--------------DLETGQKVKP---TKELYITKSTGTPFVEGEPS 466 + ++GI + T + + + + K F E Sbjct: 268 KNRHVWSFKNGIFIGKEWSAQTGLYESNFYTYESREFKNLDQTIVSCKYFDKEFTNYEHL 327 Query: 467 QEFLD----LVSGYFE----SEEVMDYFTRCVGMALLGGN---KAQRFIHIRGVGGSGKS 515 + + D E V + G N Q ++G+ SGKS Sbjct: 328 ENWYDIPTPFFQSILEYQKFDSNVSKWMYVMGGRLCFDVNDIDTWQVIPFLKGIARSGKS 387 Query: 516 TLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA 575 TL+ + F N + ++++ + L + + + I E + ++ Sbjct: 388 TLITKVFRKFYNADDVRTLSNNVEKKFG---------LSSIYDAFMFIAPEVKGDLQLEQ 438 Query: 576 AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP 635 A+ + + G+ ++ + + S + N+ ++ + RR + F K Sbjct: 439 AEFQSIVSGEDVSIAVKHEKA-KSFEWSTPGILGGNEVPNWKDNSGSVLRRILTWNFGKQ 497 Query: 636 IANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDI----PEVCLKAKEEERQGTD 691 + + D KL+ + ++ Y K D DI PE +++ Sbjct: 498 VKDADPMLEYKLD-AELPIILQKCIRAYLEYAQKYADRDIWNVVPEYFKTVQKQVATIAS 556 Query: 692 TYQAWIDDC-CDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFI-G 749 T + ++ G+ L+ ++ + + N + R + Q+ Sbjct: 557 TLENFMQSTGVKYGKELFCPQKEFVALFNSHCQAN-NLGKPRFTQDFYVGPFSQREIEVR 615 Query: 750 GIKREKIEKEWKSKRIIKGLKLKPA 774 + + + + I GL + Sbjct: 616 EVTLTYKGRNYPRQAFIFGLDIVNE 640 >gi|227544271|ref|ZP_03974320.1| conserved hypothetical protein [Lactobacillus reuteri CF48-3A] gi|227185749|gb|EEI65820.1| conserved hypothetical protein [Lactobacillus reuteri CF48-3A] Length = 220 Score = 98.0 bits (242), Expect = 6e-18, Method: Composition-based stats. Identities = 33/199 (16%), Positives = 71/199 (35%), Gaps = 13/199 (6%) Query: 367 FDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSS 426 ++E + KN ++ + + + + + + I D+ Sbjct: 32 RTFNDEQQAAFKNYENAKAYEAFILKER---STRGINGILTNSRPKLVKEIND--FDADP 86 Query: 427 RFLGEQDGILDLETGQK--VKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVM 483 L +G +L+ G + + ITKST + + + + ++ +F + ++ Sbjct: 87 FLLNTPNGPFNLKKGMHGQQEIQADELITKSTSCVPG-NQGASLWQEALTTFFCGDQALI 145 Query: 484 DYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP 543 +Y VG+ +G + I G G +GKST N I G + + R Sbjct: 146 NYVQEIVGLVAIGQVYLEALIIAYGSGRNGKSTFWNTIANVLGTYTGHLSADALTTGVRR 205 Query: 544 PEAGKANPSLIRLMGSRIV 562 P + + G R++ Sbjct: 206 ----NVKPEMAEVKGKRLI 220 >gi|325292915|ref|YP_004278779.1| regulatory protein RepA [Agrobacterium sp. H13-3] gi|325060768|gb|ADY64459.1| putative regulatory protein RepA [Agrobacterium sp. H13-3] Length = 747 Score = 98.0 bits (242), Expect = 6e-18, Method: Composition-based stats. Identities = 45/273 (16%), Positives = 76/273 (27%), Gaps = 32/273 (11%) Query: 2 PVMQWKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWE----EQLLSSEKIDKLPACGFGFV 57 PV + A++ + G I + LG+K P ++ + L K P G Sbjct: 37 PVFPCRSHAEEHVDQGTGEI-ITLGEKTPLTPNGFKGATLNRPLIERMWTKYPKAAVGLP 95 Query: 58 CGVGEQPLYAFDIDSK--DEKTANTFKDTFEILHGTP-IVRIGQKPKILIPFRMNKEGIK 114 G +A DID+K + + P R+ L + G Sbjct: 96 TGEKT-GFFALDIDNKPGGANGFDWLSEMEAEHGPLPDTARVTSPNGGLHIYFKYVVGT- 153 Query: 115 KKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLF 174 + + +DI G Y +A + Y W T + ++ L Sbjct: 154 --RNRGALGAGVDIRSEGGYVLAAGSTMANGRSYKWET-----DTREIADAPAWLLDLLL 206 Query: 175 KFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVM 234 S N +RE+ N +D + Sbjct: 207 -------PKSAPAHTQYSLSAATNNAYVDAAVDRELADLAGAPMGSRNNALNDAAFSIGT 259 Query: 235 AVHHETRGSSKGKEI-------A-RRWSKQGST 259 V G S+ + + R WS+ T Sbjct: 260 IVGAGALGESEARALLQDVARGWGRDWSRCCKT 292 >gi|269837505|ref|YP_003319733.1| Bifunctional DNA primase/polymerase [Sphaerobacter thermophilus DSM 20745] gi|269786768|gb|ACZ38911.1| Bifunctional DNA primase/polymerase [Sphaerobacter thermophilus DSM 20745] Length = 458 Score = 97.6 bits (241), Expect = 7e-18, Method: Composition-based stats. Identities = 29/153 (18%), Positives = 46/153 (30%), Gaps = 15/153 (9%) Query: 8 EQAKQAIHNGFKLIPLRLGDKRP-QRLGKWEEQLLSSEKIDKL----PACGFGFVCGVGE 62 A G+ + L K P R + + + + P G G Sbjct: 41 RHALAYAARGWPVFALAPRAKVPLARSRGHHDATTDARAVREWWALWPDANIGIALG--G 98 Query: 63 QPLYAFDIDSKDEKTA--NTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120 L D+D + A + +E L P VR G + + + G + T Sbjct: 99 GRLVVLDVDRRHGGDATLAAVEREYEPLPPAPAVRTG--DGLHLYY---AAGGRPVPTRV 153 Query: 121 STQGHLDILGCGQYFVAYNIHPKTKKEYTWTTP 153 L++ G G Y VA + Y W Sbjct: 154 -LGPGLELRGDGAYVVAPPSIHPSGTRYQWADG 185 >gi|9629026|ref|NP_044045.1| MC094R [Molluscum contagiosum virus subtype 1] gi|1492037|gb|AAC55222.1| MC094R [Molluscum contagiosum virus subtype 1] Length = 791 Score = 97.6 bits (241), Expect = 7e-18, Method: Composition-based stats. Identities = 50/277 (18%), Positives = 88/277 (31%), Gaps = 41/277 (14%) Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ----------EFLDL 472 D L DG+LD+ G + T + ++ E + Sbjct: 409 DVFPEKLPFADGVLDIADGSFHTGADAKDFMCTVSTGYRLERDARARDALAPARAELERV 468 Query: 473 VSGYFE----SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 + + E + + + L G K G +GKST L++ A Sbjct: 469 LDDIQPRSPGNAENRALYEKVLASCLCGATK-PCIFFFFGETATGKSTTKKLLQSALHGL 527 Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN-----DEINAAKIKQMTG 583 ++ + NP L + R V SE + +I A +K++T Sbjct: 528 FLETGQTILTD----LMDKGPNPFLANMHLKRAVFCSELPDFSCSGAKKIRADNVKRLT- 582 Query: 584 GDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR---- 639 C+ R Y N + T I N D+A RR ++ F +NR Sbjct: 583 EPCLVGRPCYSNRINN-RNHATIIIDTNYRPVFDKVDNALMRRVGLVRFRTHFSNRGAPA 641 Query: 640 ----------DASFAQKLETKY-TLEAKKWFLKGVKA 665 DA+ +K+++ Y + L+ + Sbjct: 642 SRLYDTVKPLDAALDRKIQSHYFRFAFLELLLEWYQR 678 >gi|281419611|ref|ZP_06250619.1| Bifunctional DNA primase/polymerase [Clostridium thermocellum JW20] gi|281406743|gb|EFB37013.1| Bifunctional DNA primase/polymerase [Clostridium thermocellum JW20] Length = 268 Score = 97.6 bits (241), Expect = 8e-18, Method: Composition-based stats. Identities = 37/250 (14%), Positives = 64/250 (25%), Gaps = 34/250 (13%) Query: 8 EQAKQAIHNGFKLIPL-----------------RLGDKRPQRLGKWEEQLLSSEKIDKL- 49 + A + +IPL K P G ++ E+I K Sbjct: 7 DAALKYAEANIPVIPLHWICEDGSCSCKAGRNCDSKGKHPLYTGWYKNSTSDIEQIRKWW 66 Query: 50 ---PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPF 106 P G G L D+D ++T + + T L + + F Sbjct: 67 TKTPNANIGIPTGAKSDWLV-LDVDDGGDETISALESTHGKL-PDTVTAVTGSGGWHYVF 124 Query: 107 RMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLS 166 + K + LD G V + +Y W F Sbjct: 125 KYPKG--RSIPNKTKFAPGLDTRSTGGLIVVAPSIHVSGNQYQWLEGHSPFD-RTLAEAP 181 Query: 167 EEDVEYLFK--------FFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFG 218 ++ + + I + + ++ + R T I A L Sbjct: 182 AWLLKLMERVEVLLTPFEGSSIAAEIKEGSRNSTLTSLAGTMRARGMTEESIYAALLAEN 241 Query: 219 EEFYNGSHDE 228 N + DE Sbjct: 242 NARCNPTLDE 251 >gi|331019769|gb|EGH99825.1| bifunctional DNA primase/polymerase [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 897 Score = 97.3 bits (240), Expect = 1e-17, Method: Composition-based stats. Identities = 110/852 (12%), Positives = 225/852 (26%), Gaps = 158/852 (18%) Query: 9 QAKQAIHN-GFKLIPLRLGDKRP-----QRLGKWEEQLLSSEK-IDKLPACGFGFVCGVG 61 A++ F L+P++ G+K P + GK+ +E K P G V G Sbjct: 11 WARRYCETFNFALVPIQPGEKGPKGRGWNQPGKYIVDPAMAEAFWTKNPNHNLGVVLGP- 69 Query: 62 EQPLYAFDIDSKD---EKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNK-------- 110 + + D+D + L T +G + + F++ + Sbjct: 70 -SRVCSLDVDDVQWTRFVLYELLGVDLDALALTFPTVVGNPLRFRVLFQVPEGLELTRHS 128 Query: 111 --------------EGIKKKKTTESTQGH-------------------LDILGCGQYFVA 137 + I K G ++ V Sbjct: 129 LSWPNENDPDGSKHKSIMLKANAAREAGDTAREALYRADAEQYKRFTVFELRAGLVQDVL 188 Query: 138 YNI-HPKTKKEYTWTTPPHRFKVEDT--------------PLLSEEDVEYLFK------- 175 HP T + YTW TPP + +E +L K Sbjct: 189 PPSIHPGTGQPYTWRTPPDASGLPVLIGDLLNVWNNWDVFKRGAEAACPWLPKDAKPTGK 248 Query: 176 -------------------------FFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREI 210 +EI K+ ++ T E Sbjct: 249 QKPKPKPAPAGGKRPSVIDEFNNCHDVEEILRSHGYTKRGGKWLYPQSSTGLPGITVAEG 308 Query: 211 TAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKW- 269 + + NG ++ V + H S KE AR Q + + Sbjct: 309 KVYSHHAADPLANGHQNDAFEVFCLLEHGGDQSKAVKEAARMLGMQSTRPSASDLPPAPT 368 Query: 270 ------DTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGH 323 D + + D A +++ + L + ++ KK Sbjct: 369 EGSDQSDAAEPAAVSDAAPAPDGGAGEELTIEQVLRRFALVEGTTHVWDFDKSRAMKKSA 428 Query: 324 F---LYTADTKAWYKKDKNNVYIWSLTLD----KITASIMNFLVSMKEDVFDLSEEPEDN 376 F + K W + D + A + M+ + + + Sbjct: 429 FEARVGKPIAKLWLDATDKKLIADDQVKDIEQARKMAGKKGGALGMRPTERYVYIDGTKD 488 Query: 377 NKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGIL 436 + + R + + + ++++ + + + Sbjct: 489 VWDREKKRRIAEGAVKMALGDTYALWLNSSERRVVDVEHIVFDPTMTKDPSIY------I 542 Query: 437 DLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMAL-- 494 + G ++P + + + + E + TR + L Sbjct: 543 NTFDGLPLEPVNDDA----------ACANLRWLISFLCN--HDEAAALWLTRWLAYPLQH 590 Query: 495 LGGNKAQRFIHIRGVGGSGKS-TLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL 553 LG + + GSGKS + +G + ++N + Sbjct: 591 LGAKMDTAVLMHSTMEGSGKSLLFADTFGALYGQYAATVGQTQL----------ESNFNA 640 Query: 554 IRLMGSRIVIISETNENDEIN-AAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612 + V + + N KIK + G + + N + E+ F+ Sbjct: 641 WQSRKMWAVFEEVVSRDQRYNQVGKIKHLVTGKTVRMESKFINGWEEANHMNAVFLSNEI 700 Query: 613 HL-FVRNPDDAWWRRYIVI-PFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKG 670 + + D RR +V+ P + R + ++LE W L+ ++ Sbjct: 701 LPWPISDSD----RRMLVMWPMETLPIARQKAIGRELENGGVAALYGWLLRVDLGDFNER 756 Query: 671 LDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLW--EESHSLAKSYSEYREQELNY 728 + R G T+ ++ ++G LW S L + E+ ++ Sbjct: 757 TRPPSTASRERLVALSRAGWQTF-LYLWRYGELGRGLWGVCLSTDLYALFLEWCQRNKE- 814 Query: 729 DRKRISTRTVTL 740 +S +L Sbjct: 815 --HVMSQTKFSL 824 >gi|302873740|ref|YP_003842373.1| Bifunctional DNA primase/polymerase [Clostridium cellulovorans 743B] gi|307690022|ref|ZP_07632468.1| Bifunctional DNA primase/polymerase [Clostridium cellulovorans 743B] gi|302576597|gb|ADL50609.1| Bifunctional DNA primase/polymerase [Clostridium cellulovorans 743B] Length = 893 Score = 96.9 bits (239), Expect = 1e-17, Method: Composition-based stats. Identities = 84/648 (12%), Positives = 165/648 (25%), Gaps = 72/648 (11%) Query: 27 DKRPQRLGKWEEQLLSSEKI----DKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFK 82 K P ++ S E+I K P GF G + D+D Sbjct: 42 GKHPIYSNWGKKATTSEEEIIAEFKKYPKANIGFATG---DNYFVLDVDI--GHGGYESL 96 Query: 83 DTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHP 142 + L T VR G + M +DI G VA Sbjct: 97 KEYGELKKTLSVRTG-SGGSHHYYLMPDGVT--VPNRVGVLNGVDIRSNGGLVVAPGSVH 153 Query: 143 KTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNN 202 K+ K Y W V + + ++ +F + ++ + + + Sbjct: 154 KSGKHYEWLEHCSIDDV-EITTPDKWLIDLIFSKKSSVKEVPESIEEGSRNAVMASIAGS 212 Query: 203 RQY---TNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQ--- 256 + + I A L N ++ V R + + W + Sbjct: 213 LRRKGLSFEAILAALLVENNNRCNPPLND-SEVETIAKSICRYNPEAPITGEEWGEDKKE 271 Query: 257 ---GSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPK--------GLLAS 305 S + E+F+ ++ ++ ++ K + Sbjct: 272 NLLSSISNLEDFSKIYEKDMLSKLSMAKDNDPVTFAIIKSKLKGKINLKDLERAIKHIKH 331 Query: 306 RFSDAYNKAMFSI-------YKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNF 358 + K + Y + K ++N I+ T +++ Sbjct: 332 SEKEVEFKQALELDGLGTNGYMIPFGWSVDFNEGISKYEQNGEGIFKEVPVSFTPVVISR 391 Query: 359 LVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEA------G 412 +L E E + +W R + + A S G Sbjct: 392 RFH------NLDTEQEKVELSFYRDGYWKKVLAPRSVIFNRNSILRLADSSFPVSSNNAG 445 Query: 413 SIFSITSDLLDSSSRFLGEQDGIL--------DLETGQKVKPTKELYITKSTGTPFVEGE 464 + S SD + + + + + + + +K + Sbjct: 446 ELISYLSDFERENDKAIPVIKSVARLGWLKESEFFPYSTREYLEFENDSKEASNIMAGLK 505 Query: 465 PSQEFLDLVSGYFESEEVM--DYFTR--CVGMALLGGNKAQRFIHIRGVGGSGKSTLMNL 520 +F + ++ E + + + L +K FIH+ SGK+ + L Sbjct: 506 TYGDFDKWLEVARKARENLAARFIMASSFASVLLEPLHKRVFFIHLWHNSRSGKTATIKL 565 Query: 521 IKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISE-TNENDEINAAKIK 579 AFGN ++ + L I +++ I Sbjct: 566 SMSAFGNPNK-------LIGSFNSTIVGLERMAAALRNLPFAIDELQVLNTKKMSTDSII 618 Query: 580 QMTGGDCMTARLNYGNTYSESPASFTPFIVPNK--HLFVRNPDDAWWR 625 M R + E+ I + L D A R Sbjct: 619 YMLSQGQGRTRGSKDGGIQETLTWRNIIITTGEEAMLGTNMQDGANTR 666 >gi|115531777|ref|YP_784303.1| NTPase [Crocodilepox virus] gi|115521130|gb|ABJ09004.1| NTPase [Crocodilepox virus] Length = 781 Score = 96.9 bits (239), Expect = 1e-17, Method: Composition-based stats. Identities = 70/365 (19%), Positives = 122/365 (33%), Gaps = 41/365 (11%) Query: 349 DKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQS 408 ++I + + E + ++ E N+ R + + E S + Sbjct: 331 ERIMEAGVVHKNKYGEYIAWIAGRWETETDNNHLTRLVLSMKDAVDDDEGLVLVPSNRRI 390 Query: 409 LEAGSIFSITSDLL-DSSSRFLGEQDGILDLETGQKVKPT--KELYITKSTGTPFVE--- 462 +E ITS + D L +GILD+ T + + K+ T STG + Sbjct: 391 IENNLKDMITSCVATDLFPEKLQFDNGILDVATREFHRGEEGKDFVCTVSTGYEYAPTPA 450 Query: 463 -GEPSQEFLDLVSGYFE----SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTL 517 E ++ + + F R + L G NK G SGKST+ Sbjct: 451 GDPAVTELRAVLDDIQPPTGGNAGNREVFERVLSSCLCGVNKPYI-FFFYGDTSSGKSTV 509 Query: 518 MNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN-----DE 572 L++ F + ++ + P NP + + R+ SE + + Sbjct: 510 KKLLRSVFDGLFTETSQCILVE----PFDKGPNPYVSSIHLKRVTFCSELPDFSCNNVKK 565 Query: 573 INAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF 632 I + +K++T +C+ R + N S S T I N D+A RR +I F Sbjct: 566 IRSDNVKKLT-ENCIVGRACFSNKISNCNVS-TIIIDSNYKPVFDKVDNAIMRRIGLIHF 623 Query: 633 DKPI----------------ANRDASFAQKLETKY-TLEAKKWFLKGVKAYISKGLDVDI 675 +A K+ T Y L+ + GL ++ Sbjct: 624 KTHFSPNLNRPCLGNSYDVVKKLNAELESKIRTNYFRGAFLTLLLEWYAKHHLHGLSLEP 683 Query: 676 -PEVC 679 PE+ Sbjct: 684 TPELI 688 >gi|281419623|ref|ZP_06250630.1| Bifunctional DNA primase/polymerase [Clostridium thermocellum JW20] gi|281406730|gb|EFB37001.1| Bifunctional DNA primase/polymerase [Clostridium thermocellum JW20] Length = 268 Score = 96.9 bits (239), Expect = 1e-17, Method: Composition-based stats. Identities = 40/250 (16%), Positives = 64/250 (25%), Gaps = 34/250 (13%) Query: 8 EQAKQAIHNGFKLIPL-----------------RLGDKRPQRLGKWEEQLLSSEKIDKL- 49 + A + +IPL K P G + E+I K Sbjct: 7 DAALKYAEANIPVIPLHWICEGGLCSCKAGKNCDSKGKHPLYTGWYNNSTTDVEQIKKWW 66 Query: 50 ---PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPF 106 P G G L D+D ++T + + T L + + + F Sbjct: 67 TKTPNANIGIPTGAKSGWLV-LDVDDGGDETLSALEATHGKL-PDTVTAVTGGGGLHYIF 124 Query: 107 RMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLS 166 + K + D G V + +Y W F + Sbjct: 125 KYPKG--RSIPNKTKFAPGFDNHSTGGLIVVAPSIHVSDNQYQWLKGHSSFD-KTLAEAP 181 Query: 167 EEDV------EYLFKFFQEITVPLVKDKKSIIPSKTWTNNN--NRQYTNREITAFLSCFG 218 E + E L F+ ++ + S + T R T I L Sbjct: 182 EWLLKLMEREEVLLTPFEGRSIVAGIKEGSRNSTLTSLAGTMRARGMTEEGIYTALLAEN 241 Query: 219 EEFYNGSHDE 228 N DE Sbjct: 242 NARCNPPLDE 251 >gi|317508622|ref|ZP_07966280.1| bifunctional DNA primase/polymerase [Segniliparus rugosus ATCC BAA-974] gi|316253089|gb|EFV12501.1| bifunctional DNA primase/polymerase [Segniliparus rugosus ATCC BAA-974] Length = 679 Score = 96.9 bits (239), Expect = 1e-17, Method: Composition-based stats. Identities = 46/367 (12%), Positives = 94/367 (25%), Gaps = 57/367 (15%) Query: 8 EQAKQAIHNGFKLIPL-----------------RLGDKRPQRLGKWEEQLLSSEK----- 45 E A + G+ +IP+ + + G W+ ++E Sbjct: 6 EGALRLAKLGWAVIPVHYVVPSTGVCSCGNADPKHSTGKHPIRGGWQNGPAATEADVYSL 65 Query: 46 -IDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKP-KIL 103 +++ P G G +A D+D + T P + + Sbjct: 66 FMEENPRYNVGVRTGKVS-GFFALDVDPRHG-GDETLAALVAEHGALPATVVVRTGSGGQ 123 Query: 104 IPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTP 163 + E + LD+ G G + VA Y + + P Sbjct: 124 HYYFQLPEDFEVGNNKSYIGDGLDVRGKGGFVVAPPSASGEGG-YRFESDPETT---AIA 179 Query: 164 LLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYN 223 E +E L + +P + + ++ + A ++ + + N Sbjct: 180 PAPEWLLELL--RPKANEQEAEAVVVEDLPDRDGMPESVQRRYDAYARAAVASEADLYRN 237 Query: 224 GSHDEWIPVVMAVHHETRGSSKGKEIARR-WSKQGSTYDEENFN------YKWDTF---- 272 P+ + G EI+ W+ KW Sbjct: 238 A------PLGRGNDALFTAACNGFEISNSPWNAVTGKDVRAALEAARVERAKWRGAGGGQ 291 Query: 273 ---DFEEIGDTAKKRSTFTSLF--YHHGKLIPKGLLASRFS--DAYNKAMFSIYKKG-HF 324 +F + D+A+ +T G D + K + + Sbjct: 292 TEEEFRKTVDSARNTTTGKGRRPPEEREDKQIGGDEVDDMHVLDDHVKWLLDQFVDSQDV 351 Query: 325 LYTADTK 331 D + Sbjct: 352 DAAPDRR 358 >gi|288964715|gb|ADC79472.1| hypothetical protein [Staphylococcus aureus] Length = 539 Score = 96.9 bits (239), Expect = 1e-17, Method: Composition-based stats. Identities = 47/391 (12%), Positives = 118/391 (30%), Gaps = 28/391 (7%) Query: 307 FSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDV 366 +++ ++ +I K + Y L ++ + + ++ Sbjct: 48 YNELIDQLRLNIPKDTDYRPNI-----YSYFGIKKNPNDTVLMELMIKVF-HIKRFNSEL 101 Query: 367 FDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSS 426 F + + + + ST +++ G S + L + Sbjct: 102 FVFKANGWQKINGDELQGLISKMIQVL--LVDYKPSLSTLKNVVDGLQKSTDVEELVENE 159 Query: 427 RFLGEQDGILDLET----GQKVKPTKELYITKSTGTPFVEGEPSQE-FLDLVSGYFE-SE 480 ++G + + DL T + + + S T V + F + + Sbjct: 160 HYIGCGENMFDLNTFQVVKNSIDIFPKTRLNLSLSTNDVITDKIPPYFKQYMLQLANYDD 219 Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540 ++ + + + L K +R + + G +GKS + L+K F ++ +++ +++ Sbjct: 220 DLQYFLFQHTAVLLTADTKYRRGLILYGGAKNGKSVYIELVKSFFYSKDIVSKPLNELEG 279 Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEIN--AAKIKQMTGGDCMTARLNYGNTYS 598 L+ ++ E ++ K++ + M G T Sbjct: 280 ---------RFDKESLIDKSLMASHEIGQSRIQEKIVNDFKKLLSVESMHVDRK-GKTQV 329 Query: 599 ESPASFTPFIVPNKHLFVRNPD-DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKK 657 E N L A RR +IP + + D S KL+ E Sbjct: 330 EVILDLKLIFSTNAILNFPPEHAKALERRINIIPCEYYVEKADTSLIDKLQ-SEKKEIFL 388 Query: 658 WFLKGVKAYISKGLDVDIPEVCLKAKEEERQ 688 + + + + ++ + + Sbjct: 389 YLMYVYQQIVKADIEYLENSRVTEITHDWLN 419 >gi|291336073|gb|ADD95660.1| hypothetical protein [uncultured phage MedDCM-OCT-S11-C349] Length = 633 Score = 96.5 bits (238), Expect = 2e-17, Method: Composition-based stats. Identities = 37/219 (16%), Positives = 66/219 (30%), Gaps = 34/219 (15%) Query: 105 PFRMNKEGIKKKKT---TESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVED 161 FR+ +E K + G +IL G+ V Y +P K + + D Sbjct: 1 MFRVPEELWADVKGHGLRKEDGGDYEILW-GRQGVVYGAYPG-GKVSKPGQYRLQGDLTD 58 Query: 162 TPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEF 221 P + + + + + I T + E +S G+ Sbjct: 59 IPTAPDWLLAEMRQPPRSINKK--------ELDFTDRTQDEIAQIIFECLTVISQQGK-- 108 Query: 222 YNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEEN-----FNYKWDTFDFEE 276 G+ D W+ + MA+H G + WS + Y E W +F Sbjct: 109 --GTRDHWVKIGMAIHSALPTD-MGLHLWASWSCEDPDYASEWENSNPCEEVWYSF---- 161 Query: 277 IGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAM 315 +L + + + RFS+ K + Sbjct: 162 ----KGNGVGLGTLIWLADR---EDPDRKRFSEDTKKIV 193 >gi|14021049|dbj|BAB47673.1| hypothetical protein [Staphylococcus aureus] gi|27529899|dbj|BAC53836.1| hypothetical protein [Staphylococcus aureus] gi|205825353|dbj|BAG71444.1| hypothetical protein [Staphylococcus aureus] gi|288551796|gb|ADC53392.1| hypothetical protein [Staphylococcus aureus] gi|329315336|gb|AEB89749.1| hypothetical protein SAT0131_02878 [Staphylococcus aureus subsp. aureus T0131] Length = 547 Score = 96.5 bits (238), Expect = 2e-17, Method: Composition-based stats. Identities = 48/391 (12%), Positives = 119/391 (30%), Gaps = 28/391 (7%) Query: 307 FSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDV 366 +++ ++ +I K + Y L ++ + + ++ Sbjct: 48 YNELIDQLRLNIPKDTDYRPNI-----YSYFGIKKNPNDTVLMEMMIKVF-HIKRFNSEL 101 Query: 367 FDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSS 426 F + + + + ST +++ G S + L + Sbjct: 102 FVFKANGWQKINGDELQGLISKMIQVL--LVDYKPSLSTLKNVVDGLQKSTDVEELVENE 159 Query: 427 RFLGEQDGILDLET----GQKVKPTKELYITKSTGTPFVEGEPSQE-FLDLVSGYFE-SE 480 R++G + + DL T + + + S T V + F + + Sbjct: 160 RYIGCGENMFDLNTFQVVKNSIDIFPKTRLNLSLSTNDVITDKIPPYFKQYMLQLANYDD 219 Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540 ++ + + + L K +R + + G +GKS + L+K F ++ +++ +++ Sbjct: 220 DLQYFLFQHTAVLLTADTKYRRGLILYGGAKNGKSVYIELVKSFFYSKDIVSKPLNELEG 279 Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEIN--AAKIKQMTGGDCMTARLNYGNTYS 598 L+ ++ E ++ K++ + M G T Sbjct: 280 ---------RFDKESLIDKSLMASHEIGQSRIQEKIVNDFKKLLSVESMHVDRK-GKTQV 329 Query: 599 ESPASFTPFIVPNKHLFVRNPD-DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKK 657 E N L A RR +IP + + D S KL+ E Sbjct: 330 EVILDLKLIFSTNAILNFPPEHAKALERRINIIPCEYYVEKADTSLIDKLQ-SEKKEIFL 388 Query: 658 WFLKGVKAYISKGLDVDIPEVCLKAKEEERQ 688 + + + + ++ + + Sbjct: 389 YLMYVYQQIVKADIEYLENSRVTEITHDWLN 419 >gi|149003120|ref|ZP_01828029.1| DNA primase [Streptococcus pneumoniae SP14-BS69] gi|147758861|gb|EDK65857.1| DNA primase [Streptococcus pneumoniae SP14-BS69] Length = 313 Score = 96.5 bits (238), Expect = 2e-17, Method: Composition-based stats. Identities = 33/215 (15%), Positives = 76/215 (35%), Gaps = 20/215 (9%) Query: 388 NTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDL---LDSSSRFLGEQDGILDLETGQKV 444 N +R+ ++ +S+ S LE S + + LD R++ +G+ +++T + Sbjct: 92 NDIFRKLLLKYDSRLTSNKFFLELISYIRTETKMKPPLD-DYRYIPVANGVYNIKTHKLE 150 Query: 445 KPTKELYITKSTGTPFVEGEPSQ------EFLDLVSGY-FESEEVMDYFTRCVGMALLGG 497 + + IT T + +F + +EV+ + + A+ Sbjct: 151 EFSPNFVITSKIQTEYNPCARKPILDGWFDFDRWLEALAVNDKEVVALLWQVINEAINPN 210 Query: 498 NKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLM 557 ++ + + G G +GK T +L++ G + N + + L L Sbjct: 211 RTRKKMVLMVGDGNNGKGTFQSLLENLIGRSNISNLKPDQFGKE---------FYLGALE 261 Query: 558 GSRIVIISETNENDEINAAKIKQMTGGDCMTARLN 592 G I + + + + + GD + Sbjct: 262 GKVCNIGDDISNKYLDEVSDLMSVISGDPVQVNKK 296 >gi|330939433|gb|EGH42789.1| bifunctional DNA primase/polymerase [Pseudomonas syringae pv. pisi str. 1704B] Length = 897 Score = 96.5 bits (238), Expect = 2e-17, Method: Composition-based stats. Identities = 106/856 (12%), Positives = 219/856 (25%), Gaps = 166/856 (19%) Query: 9 QAKQAIHN-GFKLIPLRLGDKRP-----QRLGKWEEQLLSSEK-IDKLPACGFGFVCGVG 61 A++ F L+P++ G+K P + GK+ +E K P G V G Sbjct: 11 WARRYCETFNFALVPIQPGEKGPKGRGWNQPGKYIVDPAKAEAFWTKNPNHNLGVVLGP- 69 Query: 62 EQPLYAFDIDSKD---EKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNK-------- 110 + + D+D + L T +G + + F++ + Sbjct: 70 -SRVCSLDVDDVQWTRFVLYELLGVDLDALALTFPTVVGNPLRFRVLFQVPEGLELTRHS 128 Query: 111 --------------EGIKKKKTTESTQGH-------------------LDILGCGQYFVA 137 + I K G ++ V Sbjct: 129 LSWPNENDPDGSKHKSIMLKANAARDAGDTAREALYRADAENYKRFTVFELRAGLVQDVL 188 Query: 138 YNI-HPKTKKEYTWTTPPHRFKVEDT--------------PLLSEEDVEYLFK------- 175 HP T K YTW TPP + +E +L K Sbjct: 189 PPSIHPGTGKPYTWRTPPDASGLPILISDLLNVWNNWDVFKRGAEAACPWLPKDAKPAGK 248 Query: 176 -------------------------FFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREI 210 +EI K+ ++ + E Sbjct: 249 QKPKPKPAPAGCKRPSVIDEFNNSHDVEEILRSHGYTKRGSKWLYPQSSTGLPGISVAEG 308 Query: 211 TAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWD 270 + + NG ++ V + H S K+ AR Q + Sbjct: 309 KVYSHHAADPLANGHQNDAFEVFCLLEHAGDQSKAVKDAARMLGMQSARPSASELPPAPT 368 Query: 271 TFDFEEIGDTAKKRSTFTSLFY--HHGKLIPKGLLA-----SRFSDAYNKAMFSIYKKGH 323 + S +L + +L + ++ + KK Sbjct: 369 EGSDKPDAAAPDAASEAAPAPDGGAGEELTIEQVLRRFALVEGTTHVWDSDKSRVMKKSA 428 Query: 324 F---LYTADTKAWYKKDKNNVYIWSLTLD----KITASIMNFLVSMKEDVFDLSEEPEDN 376 F + K W + D + A + M+ + + + Sbjct: 429 FEARVGKPIAKLWLDATDKKLIADDQVKDIEQARKMAGKKGGALGMRPTERYVYIDGTKD 488 Query: 377 NKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGIL 436 + + R + + + ++++ + + + Sbjct: 489 VWDREKKRRIAEGAVKMALGDTYALWLNSSERRVVDVEHIVFDPTMTKDPSIY------I 542 Query: 437 DLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMAL-- 494 + G ++P + + + + E + TR + L Sbjct: 543 NTFDGLPLEPVNDDA----------ACANLRWLISFLCN--HDEAAALWLTRWLAYPLQH 590 Query: 495 LGGNKAQRFIHIRGVGGSGKS-TLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL 553 LG + + GSGKS + +G + ++N + Sbjct: 591 LGAKMDTAVLMHSTMEGSGKSLLFADTFGALYGQYAATVGQTQL----------ESNFNA 640 Query: 554 IRLMGSRIVIISETNENDEIN-AAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612 + V + + N KIK + G + + N + E+ F+ Sbjct: 641 WQSRKMWAVFEEVVSRDQRYNQVGKIKHLVTGKTVRMESKFINGWEEANHMNAVFLSNEI 700 Query: 613 HL-FVRNPDDAWWRRYIVI-PFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKG 670 + + D RR +V+ P + R + ++LE W L+ ++ Sbjct: 701 LPWPISDSD----RRMLVMWPMETLPVARQKAIGRELENGGVAALYGWLLRVDLGDFNER 756 Query: 671 LDVDIPEV----CLKAKEEERQGTDTYQAWIDDCCDIGENLWEE--SHSLAKSYSEYREQ 724 ++ + W ++G LW S L + E+ ++ Sbjct: 757 TRPPSTASRERLVALSRAGWQT---FLHLW--RYGELGRGLWGACLSTDLYALFIEWCQR 811 Query: 725 ELNYDRKRISTRTVTL 740 +S +L Sbjct: 812 NKE---HVMSQTKFSL 824 >gi|251811420|ref|ZP_04825893.1| conserved hypothetical protein [Staphylococcus epidermidis BCM-HMP0060] gi|251805049|gb|EES57706.1| conserved hypothetical protein [Staphylococcus epidermidis BCM-HMP0060] Length = 539 Score = 96.5 bits (238), Expect = 2e-17, Method: Composition-based stats. Identities = 47/391 (12%), Positives = 118/391 (30%), Gaps = 28/391 (7%) Query: 307 FSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDV 366 +++ ++ +I K + Y L ++ + + ++ Sbjct: 48 YNELIDQLRLNIPKDTDYRPNI-----YSYFGIKKNPNDTVLMEMMIKVF-HIKRFNSEL 101 Query: 367 FDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSS 426 F + + + + ST +++ G S + L + Sbjct: 102 FVFKANGWQKINGDELQGLISKMIQVL--LVDYKPSLSTLKNVVDGLQKSTDVEELVENE 159 Query: 427 RFLGEQDGILDLET----GQKVKPTKELYITKSTGTPFVEGEPSQE-FLDLVSGYFE-SE 480 ++G + + DL T + + + S T V + F + + Sbjct: 160 HYIGCGENMFDLNTFQVVKNSIDIFPKTRLNLSLSTNDVITDKIPPYFKQYMLQLANYDD 219 Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540 ++ + + + L K +R + + G +GKS + L+K F ++ +++ +++ Sbjct: 220 DLQYFLFQHTAVLLTADTKYRRGLILYGGAKNGKSVYIELVKSFFYSKDIVSKPLNELEG 279 Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEIN--AAKIKQMTGGDCMTARLNYGNTYS 598 L+ ++ E ++ K++ + M G T Sbjct: 280 ---------RFDKESLIDKSLMASHEIGQSRIQEKIVNDFKKLLSVESMHVDRK-GKTQV 329 Query: 599 ESPASFTPFIVPNKHLFVRNPD-DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKK 657 E N L A RR +IP + + D S KL+ E Sbjct: 330 EVILDLKLIFSTNAILNFPPEHAKALERRVNIIPCEYYVEKADTSLIDKLQ-SEKKEIFL 388 Query: 658 WFLKGVKAYISKGLDVDIPEVCLKAKEEERQ 688 + + + + ++ + + Sbjct: 389 YLMYVYQQIVKADIEYLENSRVTEITHDWLN 419 >gi|37626154|gb|AAQ96530.1| putative integrase [Vibrio phage VP16T] Length = 791 Score = 96.5 bits (238), Expect = 2e-17, Method: Composition-based stats. Identities = 45/319 (14%), Positives = 90/319 (28%), Gaps = 49/319 (15%) Query: 10 AKQAIHNGFKLIPLRLGDKRPQRLGK--WEEQLLSSEKIDKLPACGFGFVCGVGEQPLYA 67 A NG + P DK P W++ + P+ G Q + Sbjct: 5 AVTLKANGLDVFPCL-QDKTPAVPKGTSWKQWAHADLNALPWPSDIVGV---PIPQGVVV 60 Query: 68 FDIDSKDEKTANTFKDTFEILHGTPIVRI--GQKPKILIPFRMNKEGIKKKKTTESTQ-- 123 D+D+ T + I Q FR +K + Q Sbjct: 61 LDLDTYKGITREYVEAGAGFAIPWDEAHIQDTQSGGQHYAFRAPDWPVKNISNAKHNQTG 120 Query: 124 ---GHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEI 180 LD+ G+ + T + Y T + F ++ Sbjct: 121 EKFEGLDVRSAGK------GYIATGEPYYRPTAKGG---------------AVAMAFPQM 159 Query: 181 TVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHET 240 PL + + + + + + T++E +EW+ V +A+ Sbjct: 160 LPPLPEGLRPWLEAVEHDSAERVEITDQEAQTVREALSYIDPGDKREEWVKVGLALKSGF 219 Query: 241 RGSSKGKEIARRWSKQG--------STYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFY 292 +G + WS + Y E+ +W +F A+ T ++++ Sbjct: 220 GDDPQGLSLFDEWSSGALWQDGDMPANYVPEHIETQWHSF-------KAEGGRTIATVYH 272 Query: 293 HHGKLIPKGLLASRFSDAY 311 + + +D + Sbjct: 273 KAIEGGWQPPAGINAADVF 291 >gi|37626216|gb|AAQ96591.1| putative integrase [Vibrio phage VP16C] Length = 791 Score = 96.1 bits (237), Expect = 2e-17, Method: Composition-based stats. Identities = 42/323 (13%), Positives = 95/323 (29%), Gaps = 57/323 (17%) Query: 10 AKQAIHNGFKLIPLRLGDKRPQRLGK--WEEQLLSSEKIDKLPACGFGFVCGVGEQPLYA 67 A+Q +G P +K P W++ + P+ G + Sbjct: 5 AQQLKAHGLGAFPCL-QNKMPAVPKGTSWKDWAHAELNALPWPSDIVGV---PIPSGVVV 60 Query: 68 FDIDSKDEKTANTFKDTFEILHG------TPIVRIGQKPKILIPFRMNKEGIKKKKTTES 121 D+D+ T ++ E G ++ Q FR +K + Sbjct: 61 LDLDTYKGIT----REYVEAGAGFAIPWDAAHIQTTQSGGQHYAFRAPNWPVKNISNAKH 116 Query: 122 TQGHL-----DILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKF 176 + + D+ G+ + T + Y T L Sbjct: 117 NETGVQFEGLDVRSAGK------GYIATGEPYYTPTHLGG---------------ALAMA 155 Query: 177 FQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAV 236 F ++ PL + + + + ++ + T+ + + +EW+ V +++ Sbjct: 156 FPQMLPPLPEGLRPWLEAVAHESSERVEVTDEDAKTIREALRHIDPGETREEWVKVGLSL 215 Query: 237 HHETRGSSKGKEIARRWSKQG--------STYDEENFNYKWDTFDFEEIGDTAKKRSTFT 288 +G + WS + Y E+ +WD+F A+ T Sbjct: 216 KSGFGDDPQGLSLFDEWSSGALWRDGDEPANYVPEHIETQWDSF-------KAEGGRTIA 268 Query: 289 SLFYHHGKLIPKGLLASRFSDAY 311 ++++ + + D + Sbjct: 269 TVYHKAIEGGWQPPAGINAFDVF 291 >gi|322366581|gb|ADW95367.1| putative phage/plasmid primase [Staphylococcus cohnii] Length = 545 Score = 96.1 bits (237), Expect = 2e-17, Method: Composition-based stats. Identities = 50/354 (14%), Positives = 111/354 (31%), Gaps = 24/354 (6%) Query: 345 SLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKS 404 + T+ + + ++F + + + + S Sbjct: 79 NDTILVEMMISIFHIKRFDSELFIFKDIGWQKVNEDELQGLISKMIQVL--LVGYKPSLS 136 Query: 405 TAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGE 464 T +++ G S L +++G + +L T + V+ + +++ + + Sbjct: 137 TLKNVVDGIQKSTDVKELVEDKQYIGCGLNMFNLNTFEVVENSIKIFPKTRLNLELNKSD 196 Query: 465 PS-----QEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLM 518 F + ++ + + + L K +R + + G +GKS + Sbjct: 197 VITDKIPPYFNRYMLELANFDSDLQYFLFQHTAVLLTADTKRRRGLILYGAANNGKSVFI 256 Query: 519 NLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK- 577 L+K F + VI+ ++I L+G R++ E E +IN Sbjct: 257 KLLKSFFYSNDVISKTLNEIGG---------RFDKESLVGKRLMASDEIGE-AKINEKVV 306 Query: 578 --IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD-DAWWRRYIVIPFDK 634 K++ + + A G T E N L A RR +VIP + Sbjct: 307 NDFKKLLSVEPIHADRK-GKTQVEVTLDLKLVFNTNAVLSFPPAHAKALERRIVVIPCEY 365 Query: 635 PIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQ 688 + D KL+ + + K + ++ E + + Sbjct: 366 YVTKADPDLVVKLQ-SEKKAIFLYLMYVYKQILDDDVEKIENERVTELSHDWLN 418 >gi|281419297|ref|ZP_06250313.1| Bifunctional DNA primase/polymerase [Clostridium thermocellum JW20] gi|281407163|gb|EFB37425.1| Bifunctional DNA primase/polymerase [Clostridium thermocellum JW20] Length = 268 Score = 95.7 bits (236), Expect = 2e-17, Method: Composition-based stats. Identities = 39/250 (15%), Positives = 66/250 (26%), Gaps = 34/250 (13%) Query: 8 EQAKQAIHNGFKLIPL-----------------RLGDKRPQRLGKWEEQLLSSEKIDKL- 49 + A + +IPL K P G ++ E+I K Sbjct: 7 DAALKYAEANIPVIPLHWICEGGLCSCKAGKNCDSKGKHPLYTGWYKNSTTDVEQIKKWW 66 Query: 50 ---PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPF 106 P G G L D+D ++T + + T L + + + F Sbjct: 67 TKTPNANIGIPTGAKSGWLV-LDVDDGGDETLSALEATHGKL-PDTVTAVTGGGGLHYIF 124 Query: 107 RMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLS 166 + ++ + D G V + +Y W F + Sbjct: 125 KYSQG--RSIPNKTKFAPGFDNHSTGGLIVVAPSIHVSDNQYQWLKGHSSFD-KTLAEAP 181 Query: 167 EEDV------EYLFKFFQEITVPLVKDKKSIIPSKTWTNNN--NRQYTNREITAFLSCFG 218 E + E L F+ ++ + S + T R T I L Sbjct: 182 EWLLKLMEREEVLLTPFEGRSIVAGIKEGSRNSTLTSLAGTMRARGMTEEGIYTALLAEN 241 Query: 219 EEFYNGSHDE 228 N DE Sbjct: 242 NARCNPPLDE 251 >gi|323173146|gb|EFZ58777.1| hypothetical protein ECLT68_2560 [Escherichia coli LT-68] Length = 565 Score = 95.7 bits (236), Expect = 3e-17, Method: Composition-based stats. Identities = 77/610 (12%), Positives = 160/610 (26%), Gaps = 95/610 (15%) Query: 14 IHNGFKLIPLRL-GDKRPQRLGKWEEQLLSSEKIDKL---PACGFGFVCGVGEQPLYAFD 69 + + F P R G ++ + W +++ + P G G + A D Sbjct: 14 LSHNFGKTPCRYNGQRKVVGIPDWANYVVTENDFARWSNEPDYGICVRTG---DGVVALD 70 Query: 70 IDSKDEKTANTFKDTFEILHG--TPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLD 127 D D ++ G P K L ++ + K+ E ++ Sbjct: 71 CDINDAGMQEIVRNIILSCLGELPPRRWRADSHKCLYLIAVDGDYRKRGHRLEGENKQIE 130 Query: 128 ILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKD 187 +L GQ FVA HP + W ++ ++ E +E L++ + Sbjct: 131 LLAKGQQFVACGTHPA-GERIQWDCGLPGEPLK----ITSEQLESLWQRLADNLPVKDSY 185 Query: 188 KKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPV-VMAVHHETRGSSKG 246 + LSC +W+ + + GS Sbjct: 186 TAGAGRQRD-----------------LSCVDPS-ATDDVADWLDANGWTLSVSSDGSRNL 227 Query: 247 KEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASR 306 K S Y F K F + GL + Sbjct: 228 KPFRDE-----SEYSNGCSETSIKYF--------PKGTGGFEQGHFKSMHNTDAGLTDAD 274 Query: 307 FSD--AYNKAMFSIY-----KKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFL 359 + + Y +++F +T + +Y+ D++ Sbjct: 275 WLEGYGYTQSLFEDLTVAEDGDKPEFTDINTDMTAHFLERFIYVIEG--DQVCDLSRPPY 332 Query: 360 VSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITS 419 M + + + T + + K A++ Sbjct: 333 QCMMDMKSFKNLMAPYQFPPEGKGQPVPATKRWIE-----HRHKKIAETTGYKPGAGRII 387 Query: 420 DLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFES 479 + D G ++ + + +K + FL+ ++ Sbjct: 388 ERFD----------GRFEINEFYMPEHPRTADTSKVS-----------TFLNHMAYLVPD 426 Query: 480 EEVMDYFTRCVGMALLG--GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537 ++F +G + +H+ G+G+ + L++ G Sbjct: 427 AWQREFFIARLGWMVQRPERRCPISILHVATAHGTGRGWVSQLMERVLGPWNCARTRMKI 486 Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA--AKIKQMTGGDCMTARLNYG- 594 + N+ + L + + I E END+ KI+ + YG Sbjct: 487 LCDNQFHD---------YLYNTLLCTIDEVRENDKRYEVNDKIRDVLTEPRFEVNRKYGS 537 Query: 595 NTYSESPASF 604 +F Sbjct: 538 KKRWIYTPAF 547 >gi|294085074|ref|YP_003551834.1| hypothetical protein SAR116_1507 [Candidatus Puniceispirillum marinum IMCC1322] gi|292664649|gb|ADE39750.1| hypothetical protein SAR116_1507 [Candidatus Puniceispirillum marinum IMCC1322] Length = 728 Score = 95.7 bits (236), Expect = 3e-17, Method: Composition-based stats. Identities = 43/318 (13%), Positives = 96/318 (30%), Gaps = 34/318 (10%) Query: 465 PSQEFLDLVSG--YFESEEVMDYFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLMNLI 521 +L+ + E++ +Y + A+ G + + IRG G GK +N+ Sbjct: 399 DCGLYLEHIRQNICLGDEDLYEYVLDWMADAIQNPGKRPGVALAIRGKQGVGKGVFVNVF 458 Query: 522 KYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN-ENDEINAAKIKQ 580 FG + ++S ++ N L +V E D+ +K Sbjct: 459 ASLFGPHAIQVTQSSHLVGNFN----------AHLRDKLLVFADEAFWAGDKRAEGVLKG 508 Query: 581 MTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD 640 + D + + G SP + N + D RR++VI + Sbjct: 509 LVTEDNIAIEMK-GIDVQSSPNYVRLILASNNEWIIPASAD--QRRFVVIEASEARMQDA 565 Query: 641 ASFAQKLETKYTLEAKKWF-LKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD 699 + F + + + L +IP+ ++ D+ W+ + Sbjct: 566 SYFGSIINQIENGGREALMYFLSERDLNRVNLR-NIPKT-EALVMQQLHSLDSVAQWLYN 623 Query: 700 CC---DIGENLW---------EESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGF 747 C +I ++ + +Y + ++ + L++ Sbjct: 624 CLYSGEIEDDAHGIRTSWPTSVSVSNFFDAYIYFCKR--HSISHPSKLAVFGRRLRELLP 681 Query: 748 IGGIKREKIEKEWKSKRI 765 RE + ++ Sbjct: 682 SSRKIREGGKTRDAKYQL 699 >gi|281419573|ref|ZP_06250583.1| Bifunctional DNA primase/polymerase [Clostridium thermocellum JW20] gi|281406762|gb|EFB37030.1| Bifunctional DNA primase/polymerase [Clostridium thermocellum JW20] Length = 268 Score = 95.7 bits (236), Expect = 3e-17, Method: Composition-based stats. Identities = 42/255 (16%), Positives = 66/255 (25%), Gaps = 34/255 (13%) Query: 3 VMQWKEQAKQAIHNGFKLIPL-----------------RLGDKRPQRLGKWEEQLLSSEK 45 M + A + +IPL K P G ++ E+ Sbjct: 2 KMTMMDAALKYAETNIPVIPLHWICEDGSCSCKKGQQCDSKGKHPLYTGWYKNSTTDVEQ 61 Query: 46 IDKL----PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPK 101 I K P G G L D+D ++T + + T L T G+ + Sbjct: 62 IKKWWTKTPNANIGIPTGAKSDWLV-LDVDDGGDETLSALESTHGKLPDTVTAVTGRGGR 120 Query: 102 ILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVED 161 F+ + + LD G V + Y W F Sbjct: 121 -HYIFKYPQG--RSIPNKTKFAPGLDTRSTGGLIVVAPSIHVSGNRYEWIKDYSPFD-RT 176 Query: 162 TPLLSEEDV------EYLFKFFQEITVPLVKDKKSIIPSKTWTNNN--NRQYTNREITAF 213 + E L F+ ++ + S + T + R T I Sbjct: 177 PAEAPAWLLKLMERVEVLLTPFEGSSIIAEIKEGSRNSTLTSLAGSMRARGMTEEGIYTA 236 Query: 214 LSCFGEEFYNGSHDE 228 L N DE Sbjct: 237 LLAENNARSNPPLDE 251 >gi|315501675|ref|YP_004080562.1| bifunctional DNA primase/polymerase [Micromonospora sp. L5] gi|315408294|gb|ADU06411.1| Bifunctional DNA primase/polymerase [Micromonospora sp. L5] Length = 719 Score = 95.3 bits (235), Expect = 3e-17, Method: Composition-based stats. Identities = 37/259 (14%), Positives = 73/259 (28%), Gaps = 32/259 (12%) Query: 18 FKLIPLRLGDKRPQRLG--KWEEQLLSSEKIDKL---------PACGFGFVCG----VGE 62 ++ IPL G K P W S E++++ P G G Sbjct: 20 WRPIPLPPGKKSPVPDAVTGWSNPQPSREQVEEWVTSGRFTVDPKNGVKLRAGNIALRLG 79 Query: 63 QPLYAFDIDSKDEKTANTFKDTFEILHG--TPIVRIGQKP---KILIPFRMNKEGIKKKK 117 L D+D+ D+K + G P R + + FR + Sbjct: 80 HGLIGVDVDAYDDKPGAETFKVLQERLGDLPPTWRSSSRDDGISGIYLFRCRPGRRRGSP 139 Query: 118 TTESTQGHLDILGCG-QYFVAYNIHPKTKKEYTWTTPPHRFKVEDT---PLLSEEDVEYL 173 E G ++ + G +Y + + ++Y W P +ED P E Sbjct: 140 APEDG-GGIEFVQYGHRYVICAPSLHPSGRQYVW-FSPDGEALEDEAPDPEELPWLPEAW 197 Query: 174 FKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTN----REITAFLSCFGEEFYNGSHDEW 229 ++ + +D + ++ + + + + Sbjct: 198 DRYLMRDDPVVGEDAPELPDAEVAGWIAEDSAEPCAQMARLITKTAGELALRGSSGAHDI 257 Query: 230 IPVVMAVHHETRGSSKGKE 248 + R S++G Sbjct: 258 TRDG--LWQAIRDSAQGHR 274 >gi|304379979|ref|ZP_07362708.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|269939555|emb|CBI47914.1| hypothetical protein SATW20_00320 [Staphylococcus aureus subsp. aureus TW20] gi|304341559|gb|EFM07469.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus ATCC BAA-39] Length = 547 Score = 95.3 bits (235), Expect = 4e-17, Method: Composition-based stats. Identities = 46/364 (12%), Positives = 110/364 (30%), Gaps = 23/364 (6%) Query: 334 YKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR 393 Y L ++ + + ++F + Sbjct: 70 YSYFGIKKNPNDTVLMEMMIKVF-HIKRFNSELFIFKVNGWQKINGDELQGLISKMIQVL 128 Query: 394 QNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLET----GQKVKPTKE 449 + + + ST +++ G S + L + R++G + + DL T + + Sbjct: 129 --LVDYKPSLSTLKNVVDGLQKSTDVEELVENERYIGCGENMFDLNTFQVVKNSIDIFPK 186 Query: 450 LYITKSTGTPFVEGEPSQE-FLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIR 507 + S T V + F + +++ + + + L K +R + + Sbjct: 187 TRLNLSLSTNDVITDKIPPYFKQYMLQLANYDDDLQYFLFQHTAVLLTADTKYRRGLILY 246 Query: 508 GVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISET 567 G +GKS + L+K F ++ +++ +++ L+ ++ E Sbjct: 247 GGAKNGKSVYIELVKSFFYSKDIVSKPLNELEG---------RFDKESLIDKSLMASHEI 297 Query: 568 NENDEIN--AAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD-DAWW 624 ++ K++ + M G T E N L A Sbjct: 298 GQSRIQEKIVNDFKKLLSVESMHVDRK-GKTQVEVILDLKLIFSTNAILNFPPEHAKALE 356 Query: 625 RRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKE 684 RR +IP + + D S KL+ E + + + + ++ + Sbjct: 357 RRINIIPCEYYVEKADTSLIDKLQ-SEKKEIFLYLMYVYQQIVKADIEYLENSRVTEITH 415 Query: 685 EERQ 688 + Sbjct: 416 DWLN 419 >gi|125975335|ref|YP_001039245.1| prophage Lp4 protein 7, DNA replication [Clostridium thermocellum ATCC 27405] gi|125715560|gb|ABN54052.1| prophage Lp4 protein 7, DNA replication [Clostridium thermocellum ATCC 27405] Length = 266 Score = 95.0 bits (234), Expect = 4e-17, Method: Composition-based stats. Identities = 39/250 (15%), Positives = 65/250 (26%), Gaps = 34/250 (13%) Query: 8 EQAKQAIHNGFKLIPL-----------------RLGDKRPQRLGKWEEQLLSSEKIDKL- 49 + A + +IPL K P G + E+I K Sbjct: 5 DAALKYAEANIPVIPLHWICEGGLCSCKAGKNCDSKGKHPLYTGWYNNSTTDVEQIKKWW 64 Query: 50 ---PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPF 106 P G G L D+D ++T + + T L + + + F Sbjct: 65 TKTPNANIGIPTGAKSGWLV-LDVDDGGDETLSALEATHGKL-PDTVTAVTGGGGLHYIF 122 Query: 107 RMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLS 166 + ++ + D G V + +Y W F + Sbjct: 123 KYSQG--RSIPNKTKFAPGFDNHSTGGLIVVAPSIHVSDNQYQWLKGHSSFD-KTLAEAP 179 Query: 167 EEDV------EYLFKFFQEITVPLVKDKKSIIPSKTWTNNN--NRQYTNREITAFLSCFG 218 E + E L F+ ++ + S + T R T I L Sbjct: 180 EWLLKLMEREEVLLTPFEGRSIVAGIKEGSRNSTLTSLAGTMRARGMTEEGIYTALLAEN 239 Query: 219 EEFYNGSHDE 228 N DE Sbjct: 240 NARCNPPLDE 249 >gi|166197581|dbj|BAG06190.1| hypothetical protein [Staphylococcus aureus] gi|221148470|gb|ACL99831.1| hypothetical protein [Staphylococcus pseudintermedius] gi|238768495|dbj|BAH66807.1| hypothetical protein [Staphylococcus aureus] gi|283469260|emb|CAQ48471.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus ST398] gi|288964701|gb|ADC79458.1| hypothetical protein [Staphylococcus aureus] Length = 547 Score = 95.0 bits (234), Expect = 4e-17, Method: Composition-based stats. Identities = 46/364 (12%), Positives = 110/364 (30%), Gaps = 23/364 (6%) Query: 334 YKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR 393 Y L ++ + + ++F + Sbjct: 70 YSYFGIKKNPNDTVLMEMMIKVF-HIKRFNSELFIFKVNGWQKINGDELQGLISKMIQVL 128 Query: 394 QNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLET----GQKVKPTKE 449 + + + ST +++ G S + L + R++G + + DL T + + Sbjct: 129 --LVDYKPSLSTLKNVVDGLQKSTDVEELVENERYIGCGENMFDLNTFQVVKNSIDIFPK 186 Query: 450 LYITKSTGTPFVEGEPSQE-FLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIR 507 + S T V + F + +++ + + + L K +R + + Sbjct: 187 TRLNLSLSTNDVITDKIPPYFKQYMLQLANYDDDLQYFLFQHTAVLLTADTKYRRGLILY 246 Query: 508 GVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISET 567 G +GKS + L+K F ++ +++ +++ L+ ++ E Sbjct: 247 GGAKNGKSVYIELVKSFFYSKDIVSKPLNELEG---------RFDKESLIDKSLMASHEI 297 Query: 568 NENDEIN--AAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD-DAWW 624 ++ K++ + M G T E N L A Sbjct: 298 GQSRIQEKIVNDFKKLLSVESMHVDRK-GKTQVEVILDLKLIFSTNAILNFPPEHAKALE 356 Query: 625 RRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKE 684 RR +IP + + D S KL+ E + + + + ++ + Sbjct: 357 RRINIIPCEYYVEKADTSLIDKLQ-SEKKEIFLYLMYVYQQIVKADIEYLENSRVTEITH 415 Query: 685 EERQ 688 + Sbjct: 416 DWLN 419 >gi|311063734|ref|YP_003970459.1| DNA primase [Bifidobacterium bifidum PRL2010] gi|310866053|gb|ADP35422.1| DNA primase [Bifidobacterium bifidum PRL2010] Length = 271 Score = 95.0 bits (234), Expect = 5e-17, Method: Composition-based stats. Identities = 34/211 (16%), Positives = 74/211 (35%), Gaps = 6/211 (2%) Query: 553 LIRLMGSRIVIISETNENDEINAAK-IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPN 611 L L VI E + ++ A +K + GD + N Sbjct: 2 LEPLTRVSAVITDENDTGTFVDDAAALKSVITGDPFQLNRKFKAP-RNVLFRGFMIQCVN 60 Query: 612 KHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGL 671 + +R+ ++ +RR +VIPFDK + + + ++ L V A + Sbjct: 61 ELPKLRDKSESMYRRLLVIPFDKRFQGCERKYIKDDYLNRQD-VLEYVLYRVLA-ETDYY 118 Query: 672 DVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRK 731 ++D P+VC ++ R D + + D+ L Y + ++ R Sbjct: 119 ELDEPDVCSALLDDFRVANDPLRQFADEIFYAASWHLLPCKFLYDLYRHWFQRNQPSGR- 177 Query: 732 RISTRTVTLNLKQKGFIGGIK-REKIEKEWK 761 + +++ G + +E++ + + Sbjct: 178 MLGRNAFYESIEGLAEEWGWQLQERVRVDGR 208 >gi|281419017|ref|ZP_06250034.1| Bifunctional DNA primase/polymerase [Clostridium thermocellum JW20] gi|281419526|ref|ZP_06250539.1| Bifunctional DNA primase/polymerase [Clostridium thermocellum JW20] gi|281406817|gb|EFB37082.1| Bifunctional DNA primase/polymerase [Clostridium thermocellum JW20] gi|281407166|gb|EFB37427.1| Bifunctional DNA primase/polymerase [Clostridium thermocellum JW20] gi|316941629|gb|ADU75663.1| Bifunctional DNA primase/polymerase [Clostridium thermocellum DSM 1313] Length = 268 Score = 95.0 bits (234), Expect = 5e-17, Method: Composition-based stats. Identities = 39/255 (15%), Positives = 62/255 (24%), Gaps = 34/255 (13%) Query: 3 VMQWKEQAKQAIHNGFKLIPL-----------------RLGDKRPQRLGKWEEQLLSSEK 45 M + A + +IPL K P G ++ E+ Sbjct: 2 KMTMMDAAIKYAEANIPVIPLHWICEDGSCSCKAGSDCDSKGKHPLYTGWYKNSTTDVEQ 61 Query: 46 IDKL----PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPK 101 I K P G G L D+D ++T + + T L T G + Sbjct: 62 IKKWWTKTPNANIGIPTGEKSGWLV-LDVDDGGDETLSALEATHGKLPDTVTAVTGSGGR 120 Query: 102 ILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVED 161 F K + LD G + Y W F Sbjct: 121 -HYVFIYPKG--RSIPNKTKFAPGLDTRSTGGLIAVAPSIHVSGNRYEWIKDHSPFD-RT 176 Query: 162 TPLLSEEDVEYLFK--------FFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAF 213 ++ + K I + + ++ + + R T I Sbjct: 177 PAEAPAWLLKLMEKEEVLLTPFEGSSIIAEIKEGSRNSTLTSLAGSMRARGMTEEGIYTA 236 Query: 214 LSCFGEEFYNGSHDE 228 L N DE Sbjct: 237 LLAENNARCNPPLDE 251 >gi|167767035|ref|ZP_02439088.1| hypothetical protein CLOSS21_01553 [Clostridium sp. SS2/1] gi|167711010|gb|EDS21589.1| hypothetical protein CLOSS21_01553 [Clostridium sp. SS2/1] Length = 1387 Score = 95.0 bits (234), Expect = 5e-17, Method: Composition-based stats. Identities = 61/329 (18%), Positives = 112/329 (34%), Gaps = 29/329 (8%) Query: 448 KELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNK-AQRFIHI 506 KE Y +K P G+ S + L+S + EE +G + G +K Q+F+ + Sbjct: 119 KEDYASKRLDYPLEPGDTS-AYEKLISTLYTEEERYK-IEWAIGSIVTGDSKTIQKFLVL 176 Query: 507 RGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISE 566 G G+GKST++N+I+ F S A + I + Sbjct: 177 YGEAGTGKSTILNIIQKLFNGYC------STFDAKAIGSASNMFALEAFKTNPLVAIQHD 230 Query: 567 TNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRR 626 + + + ++ + + MT + + ++ S F+ NK + + + RR Sbjct: 231 GDLSRIEDNTRLNSLVSHELMTVNEKFKSAFTNS-FKAFLFMGTNKPVKITDGKSGLIRR 289 Query: 627 YIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKG-VKAYISKG---LDVDIPEVCLKA 682 I D + S E ++ + + K + D IP L A Sbjct: 290 LI----DVKPSGNKLSSKAYKEAFSKIDFELGAIAYHCKEVYLENPGRYDNYIPTAMLGA 345 Query: 683 KEE-ERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLN 741 + D+Y + + G L + Y Y ++ S R Sbjct: 346 SNDFYNFVLDSYHIFKKEN---GTTLKAAW----EMYKTYCDEAK--VPFPFSKRNFKEE 396 Query: 742 LKQKGFIGGIKREKIEKEWKSKRIIKGLK 770 LK F +R +E + + KG + Sbjct: 397 LKN-YFHDFNERFNMEDGSRVRSYYKGFR 424 >gi|260904380|ref|ZP_05912702.1| hypothetical protein BlinB_03562 [Brevibacterium linens BL2] Length = 310 Score = 95.0 bits (234), Expect = 5e-17, Method: Composition-based stats. Identities = 26/207 (12%), Positives = 60/207 (28%), Gaps = 14/207 (6%) Query: 10 AKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKL----PACGFGFVCGVGEQPL 65 A++ G + P KRP G + + ++ P G G + Sbjct: 24 AREFARAGVPVFPCAPNGKRPLTHGGFHDATTDFSQVQAWWDQIPNANIGLPTGHPS-GV 82 Query: 66 YAFDIDSKDEKTANTFKDTFEI---LHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTEST 122 D+D ++ + L +V + + ++++ ++ Sbjct: 83 VVVDVDLHEKVNGYDAINRAHDAGKLGHWEVVTRTPSGGAHLIY--PATPATQQRSWQAA 140 Query: 123 QGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITV 182 + +D G G Y + H + +R + + D + L F Sbjct: 141 RAGVDFRGDGGYIIVPPSHRHIDGQQH----HYRLDQVNNGPATAVDAQGLRDFLDPRPA 196 Query: 183 PLVKDKKSIIPSKTWTNNNNRQYTNRE 209 + + + +R + RE Sbjct: 197 VPAPESRGTRRTPNIAALADRVASLRE 223 >gi|125974481|ref|YP_001038391.1| hypothetical protein Cthe_1980 [Clostridium thermocellum ATCC 27405] gi|125714706|gb|ABN53198.1| hypothetical protein Cthe_1980 [Clostridium thermocellum ATCC 27405] Length = 266 Score = 94.6 bits (233), Expect = 5e-17, Method: Composition-based stats. Identities = 39/250 (15%), Positives = 63/250 (25%), Gaps = 34/250 (13%) Query: 8 EQAKQAIHNGFKLIPL-----------------RLGDKRPQRLGKWEEQLLSSEKIDKL- 49 + A + +IPL K P G + E+I K Sbjct: 5 DAAIKYAEANIPVIPLHWICEDGSCSCKAGKNCDSKGKHPLYTGWYNNSTTDVEQIKKWW 64 Query: 50 ---PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPF 106 P G G L D+D ++T + + T L + + + F Sbjct: 65 TKTPNANIGIPTGAKSGWLV-LDVDDGGDETLSALEATHGKL-PDTVTAVTGGGGLHYIF 122 Query: 107 RMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLS 166 + ++ + LD G V + Y W F Sbjct: 123 KYSQG--RSIPNKTKFALGLDTRSTGGLIVVAPSIHVSGNRYEWIKDHSPFD-RTPAEAP 179 Query: 167 EEDV------EYLFKFFQEITVPLVKDKKSIIPSKTWTNNN--NRQYTNREITAFLSCFG 218 + E L F+ ++ + S + T R T I L Sbjct: 180 AWLLKLMEREEVLLTPFEGRSIVAGIKEGSRNSTLTSLAGTMRARGMTEEGIYTALLAEN 239 Query: 219 EEFYNGSHDE 228 N DE Sbjct: 240 NARCNPPLDE 249 >gi|331089475|ref|ZP_08338374.1| hypothetical protein HMPREF1025_01957 [Lachnospiraceae bacterium 3_1_46FAA] gi|330404843|gb|EGG84381.1| hypothetical protein HMPREF1025_01957 [Lachnospiraceae bacterium 3_1_46FAA] Length = 1352 Score = 94.6 bits (233), Expect = 6e-17, Method: Composition-based stats. Identities = 58/328 (17%), Positives = 111/328 (33%), Gaps = 25/328 (7%) Query: 447 TKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKA-QRFIH 505 K+ Y +K P G + L+S + E +G + G +K Q+F+ Sbjct: 122 DKKDYASKKLKYPLEAG-DLSAYNKLMSTLYSETE-RQKIEWAIGSIVCGESKKLQKFMV 179 Query: 506 IRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIIS 565 + G G+GKST++N+I+ F Y + + + + +L + +V I Sbjct: 180 LYGAAGTGKSTVLNIIQQLFEGYYSV-------FDAKALGSSSNSFALEAFKNNPLVAIQ 232 Query: 566 ETNENDEI-NAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWW 624 + I + ++ + + MT + +TYS F+ NK + + + Sbjct: 233 HDGDLSRIEDNTRLNSLVSHELMTVNEKFKSTYSN-RFKCFLFMGTNKPVKITDAKSGLI 291 Query: 625 RRYIVI-PFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAK 683 RR + + P + ++ K + D IP L A Sbjct: 292 RRLVDVSPSGNKLGPKEYKTIMKQIEFELGAIAYHCQEIYLK-NPGMYDDYIPIAMLGAS 350 Query: 684 EE-ERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNL 742 + D+Y + + G L + Y Y ++ S R L Sbjct: 351 NDFYNFIVDSYHVFKREN---GTTLKAAW----EMYKTYCDEAKVG--YPFSQRVFKEEL 401 Query: 743 KQKGFIGGIKREKIEKEWKSKRIIKGLK 770 K F +R +E + + G + Sbjct: 402 KN-YFRDYKERFNMEDGSRVRSYYIGFR 428 >gi|169334191|ref|ZP_02861384.1| hypothetical protein ANASTE_00589 [Anaerofustis stercorihominis DSM 17244] gi|169258908|gb|EDS72874.1| hypothetical protein ANASTE_00589 [Anaerofustis stercorihominis DSM 17244] Length = 410 Score = 94.6 bits (233), Expect = 7e-17, Method: Composition-based stats. Identities = 48/418 (11%), Positives = 115/418 (27%), Gaps = 42/418 (10%) Query: 5 QWKEQAKQAIHNGFKLIPLRLGD------KRPQRLGKWEEQLLSSEKIDKLPACGFGFVC 58 +W + +G +P K P + + + ++ G G Sbjct: 16 KWCNWRYENRDSGMTKVPYNPMTNAHASVKIPS---TFTDFDSAINALNIY--DGIGIRV 70 Query: 59 GVGEQPLYAFDIDS-KDEKTANTFKDTFEILHGTPIVRIGQKP-KILIPFRMNKEGIKKK 116 + L A D+D ++ ++ + G + I + I + + K Sbjct: 71 ---DGKLIAIDLDHCIEDGKLSSLAEDITSHFGNTYIEISPSGTGLRIILFVADGYVYDK 127 Query: 117 KTTESTQGHLDILGCG---QYFVAYNIHPKTKKEYTWTTPP----HRFKVEDTPLLSEED 169 T +G +++ G ++ + T + P +++ + Sbjct: 128 DTYHIKKGDIEVYVAGATNRFVTITGDVYLKNEIAENTDGLQWLIDTYMKRKVPTVNDLN 187 Query: 170 VEYLFKFFQEITV--PLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHD 227 E F + +V K+ W + + + E L + NG+ + Sbjct: 188 FENRPSFLSDESVIAKATVSKQRNKFQNLWNGDISDYPSQSEADLGLVSILSFYCNGNKE 247 Query: 228 EWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTF-DFEEIGDTAKKRST 286 + + R S+ + TY E + +F A Sbjct: 248 Q-------IDRLFRESALFRSKWDEM-HGSKTYGEITIDKALSGMKNFYSPIVPAPASED 299 Query: 287 FTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSL 346 F L P+ + ++D +F+ + + Y + K+W+ + Sbjct: 300 FDDEMNRLIALNPEDITKYPWTDIGAGMLFADFYENCLRYVPERKSWFYYENG------- 352 Query: 347 TLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKS 404 + K + + L K + + + + + K Sbjct: 353 -IWKQDVGGLKAMKLCMNLANLLHMYALKITDEHKRKSYMDYSKRWQSHGCRINILKD 409 >gi|302058867|ref|ZP_07250408.1| bifunctional DNA primase/polymerase [Pseudomonas syringae pv. tomato K40] Length = 897 Score = 94.2 bits (232), Expect = 8e-17, Method: Composition-based stats. Identities = 112/868 (12%), Positives = 216/868 (24%), Gaps = 190/868 (21%) Query: 9 QAKQAIHN-GFKLIPLRLGDKRP-----QRLGKWEEQLLSSEK-IDKLPACGFGFVCGVG 61 A++ F L+P++ G+K P + GK+ +E K P G V G Sbjct: 11 WARRYCETFNFALVPIQPGEKGPKGRGWNQPGKYIVDPAKAEAFWTKNPNHNLGVVLGP- 69 Query: 62 EQPLYAFDIDSKD---EKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNK-------- 110 + + D+D + + L +G + I FR+ + Sbjct: 70 -SRVCSLDVDDVQWTRVVLYDLLGLDLDALALAFPTVVGNPLRFRILFRVPEGLDLTRHA 128 Query: 111 --------------EGIKKKKTTESTQGH-------------------LDILGCGQYFVA 137 + I K G ++ V Sbjct: 129 LAWPNENDPDGSIHKSIMLKANAARDAGDTAREALYRADAEKYKRLTVFELRAGLVQDVL 188 Query: 138 YNI-HPKTKKEYTWTTPPHRFKVEDT--------------PLLSEEDVEYLFKFFQEITV 182 HP T + YTW TPP + +E +L K + Sbjct: 189 PPSIHPGTGQPYTWRTPPDASGLPVLIGDLLNVWNNWDVFKRGAEAACPWLPKDAKPTAK 248 Query: 183 PLVKDKKSII--PSKTWTNNNNRQYTNREITA---------------------------- 212 K K++ + + + N + EI Sbjct: 249 QKPKPKRAPVAGNRPSVIDEFNNCHDVEEILRSHGYTKRGGKWLYPQSSTGLPGITVAEG 308 Query: 213 --FLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWD 270 + + NG ++ V + H S K+ AR Q Sbjct: 309 KVYSHHAADPLANGHQNDAFEVFCLLEHGGDQSKAVKDAARMLGMQS------------- 355 Query: 271 TFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADT 330 D + + + A + + L T Sbjct: 356 --TRPSASDLPPAPTEGSDKPDAAAPDAASEAAPAPDGGAGEELTIEQVLRRFALVEGTT 413 Query: 331 KAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTD 390 W DK+ F + + + L + D Sbjct: 414 HVW-DFDKS-----------RAMKKSAFEARVGKPIAKLWLDATDKKL---IADDQVKDI 458 Query: 391 YRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDS----------------SSRFLGEQDG 434 + + + + E T D+ D + L G Sbjct: 459 EQARKMAGKKGGALGMRPTERYVYIDGTKDVWDREKKRRIAEGAVKMALGDTYALWLNSG 518 Query: 435 ---ILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEF-----LDLVSGYFESEEVMDYF 486 ++D+E + + EP + L + + + + Sbjct: 519 ERRVVDVEHIVFDPTMTKDPSIYINTFDGLPLEPVNDDAACANLRWLISFLCNHDEAAAL 578 Query: 487 T--RCVGMAL--LGGNKAQRFIHIRGVGGSGKS-TLMNLIKYAFGNQYVINAEASDIMQN 541 R + L LG + + GSGKS + +G + Sbjct: 579 WLTRWLAYPLQHLGAKMDTAVLMHSTMEGSGKSLLFADTFGALYGQYAATVGQTQL---- 634 Query: 542 RPPEAGKANPSLIRLMGSRIVIISETNENDEIN-AAKIKQMTGGDCMTARLNYGNTYSES 600 ++N + + V + + N KIK + G + + N + E+ Sbjct: 635 ------ESNFNAWQSRKMWAVFEEVVSRDQRYNQVGKIKHLVTGKTVRMESKFINGWEEA 688 Query: 601 PASFTPFIVPNKHL-FVRNPDDAWWRRYIVI-PFDKPIANRDASFAQKLETKYTLEAKKW 658 F+ + + D RR +V+ P + R + ++LE W Sbjct: 689 NHMNAVFLSNEILPWPISDSD----RRMLVMWPMETLPVARQKAIGRELENGGVAALYGW 744 Query: 659 FLKGVKAYISKGLDVDIPEV----CLKAKEEERQGTDTYQAWIDDCCDIGENLWEE--SH 712 L+ ++ ++ + W ++G LW S Sbjct: 745 LLRVDLGDFNERTRPPSTASRERLVALSRAGWQT---FLHLW--RYGELGRGLWGACLST 799 Query: 713 SLAKSYSEYREQELNYDRKRISTRTVTL 740 L + E+ ++ +S +L Sbjct: 800 DLYALFIEWCQRNKE---HVMSQTKFSL 824 >gi|78067109|ref|YP_369878.1| virulence-associated E family protein [Burkholderia sp. 383] gi|77967854|gb|ABB09234.1| Virulence-associated E family protein [Burkholderia sp. 383] Length = 761 Score = 93.8 bits (231), Expect = 1e-16, Method: Composition-based stats. Identities = 91/644 (14%), Positives = 176/644 (27%), Gaps = 126/644 (19%) Query: 38 EQLLSSEKIDKLPACG--FGFVCGVGEQP--LYAF-DIDSKDEKTANTFKDT-------- 84 + L++E++ G +G L A D+DS +T Sbjct: 59 NRPLTNERLAHHVNGGPAYGVYPMQPGSDVTLIALLDLDSHKGETPWHEMQDTAVRIVTV 118 Query: 85 --FEILHGTPIVRIGQKPKILIPFRM---NKEGIKKKKTTESTQGHLDILGCGQYFVAYN 139 L+G P G + + + ++ ++ S +D L G VA Sbjct: 119 ASAAGLNGIPFRSSG--GAGIHIYFLWDEPQDAYSARQALRSILAAVD-LHDGTKGVAAG 175 Query: 140 ---IHPKTKKEYTWTTP-------------PHRFKVEDTPLLSEEDVEYLFKFFQEITVP 183 I PK F+++D P ++++ + P Sbjct: 176 QVEIFPKQDSVSHNGYGNMFLLPLAGKSVPLDSFELDDMPKAYVTEMDW------PSSAP 229 Query: 184 LVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGS 243 + + ++ I+ + + GE +D W V+ VHH ++GS Sbjct: 230 VPRAEREIVVPPPAVVAPAEFGALKSALDAIPNGGE--NELDYDSWRNVLFGVHHASQGS 287 Query: 244 SKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLL 303 +G + +S + S YD W G T ++ + Sbjct: 288 DEGLALVHEFSARSSKYDPAKTERDWGY-----AGKNQGTPITIGTIKAMAAAHGWQDPA 342 Query: 304 ASRFSDAYNKAM----------FSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITA 353 D ++ + KG L A+ + W + D A Sbjct: 343 REPSEDDFDVVPVDEQEPPRPGYRRNGKGEILALAE-NIVTAVRAPHECGWHIRYDDFRA 401 Query: 354 SIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGS 413 + M DV D + + + +E K + ++L G Sbjct: 402 EV------MLADVADPRGLRAFTDPDYTRLQI---------QLERRGFLKLSKEALRDGV 446 Query: 414 IFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLV 473 + +DS+ +L ++ + Sbjct: 447 GLVADDNRIDSAVEWLA------------GLQHD-----------------GVPRIETFL 477 Query: 474 SGYFESEE------VMDYFTRCV-GMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFG 526 Y E+ V Y + G L G +A + G G+GK+ + + Sbjct: 478 RDYMAVEDTPYARAVSRYLWTALAGRVLSPGCEAPMVPVLIGEQGAGKTRAVKAL----- 532 Query: 527 NQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDC 586 + A+ A+ + G +V + E +A IK Sbjct: 533 ----VPAQEFYCELKLDERDDNASRMM---RGRLVVELGELRGLHTRDAESIKAFISRTH 585 Query: 587 MTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVI 630 Y F N+ F+ + RR++ + Sbjct: 586 ENFVPKYKEFSVTFARRFLFVGTTNQDEFLADETG--ERRWLPV 627 >gi|13928292|dbj|BAB46984.1| hypothetical protein [Staphylococcus aureus] Length = 547 Score = 93.8 bits (231), Expect = 1e-16, Method: Composition-based stats. Identities = 47/361 (13%), Positives = 110/361 (30%), Gaps = 23/361 (6%) Query: 334 YKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR 393 Y L ++ + + ++F + Sbjct: 70 YSYFGIKKNPNDTVLMEMMIKVF-HIKRFNSELFIFKVNGWQKINGDELQGLISKMIQVL 128 Query: 394 QNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLET----GQKVKPTKE 449 + + + ST +++ G S + L + R++G + + DL T + + Sbjct: 129 --LVDYKPSLSTLKNVVDGLQKSTDVEELVENERYIGCGENMFDLNTFQVVKNSIDIFPK 186 Query: 450 LYITKSTGTPFVEGEPSQE-FLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIR 507 + S T V + F + +++ + + + L K +R + + Sbjct: 187 TRLNLSLSTNDVITDKIPPYFKQYMLQLANYDDDLQYFLFQHTAVLLTADTKYRRGLILY 246 Query: 508 GVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISET 567 G +GKS + L+K F ++ +++ +++ L+ ++ E Sbjct: 247 GGAKNGKSVYIELVKSFFYSKDIVSKPLNELEG---------RFDKESLIDKSLMASHEI 297 Query: 568 NENDEIN--AAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD-DAWW 624 ++ K++ + M G T E N L A Sbjct: 298 GQSRIQEKIVNDFKKLLSVESMHVDRK-GKTQVEVILDLKLIFSTNAILNFPPEHAKALE 356 Query: 625 RRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKE 684 RR +IP + + D S KL+ E + + + + ++ + Sbjct: 357 RRINIIPCEYYVEKADTSLIDKLQ-SEKKEIFLYLMYVYQQIVKADIEYLENSRVTEITH 415 Query: 685 E 685 E Sbjct: 416 E 416 >gi|256006172|ref|ZP_05431087.1| Bifunctional DNA primase/polymerase [Clostridium thermocellum DSM 2360] gi|255989866|gb|EEU00033.1| Bifunctional DNA primase/polymerase [Clostridium thermocellum DSM 2360] Length = 222 Score = 93.4 bits (230), Expect = 1e-16, Method: Composition-based stats. Identities = 31/195 (15%), Positives = 48/195 (24%), Gaps = 26/195 (13%) Query: 3 VMQWKEQAKQAIHNGFKLIPL-----------------RLGDKRPQRLGKWEEQLLSSEK 45 M + A + +IPL K P G ++ E+ Sbjct: 2 KMTMMDAAIKYAEANIPVIPLHWICEDGSCSCKAGSDCDSKGKHPLYTGWYKNSTTDVEQ 61 Query: 46 IDKL----PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPK 101 I K P G G L D+D ++T + + T L T G + Sbjct: 62 IKKWWTKTPNANIGIPTGEKSGWLV-LDVDDGGDETLSALEATHGKLPDTVTAVTGSGGR 120 Query: 102 ILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVED 161 F K + LD G + Y W F Sbjct: 121 -HYVFIYPKG--RSIPNKTKFAPGLDTRSTGGLIAVAPSIHVSGNRYEWIKDHSPFD-RT 176 Query: 162 TPLLSEEDVEYLFKF 176 ++ + K Sbjct: 177 PAEAPAWLLKLMEKE 191 >gi|266621007|ref|ZP_06113942.1| conserved hypothetical protein [Clostridium hathewayi DSM 13479] gi|288867323|gb|EFC99621.1| conserved hypothetical protein [Clostridium hathewayi DSM 13479] Length = 1448 Score = 93.4 bits (230), Expect = 1e-16, Method: Composition-based stats. Identities = 60/331 (18%), Positives = 114/331 (34%), Gaps = 31/331 (9%) Query: 447 TKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKA-QRFIH 505 K+ Y +K P G + L+S + EE +G + G +K Q+F+ Sbjct: 122 NKKDYASKKLNYPLEAG-DLSAYEKLMSTLYSEEE-RTKIEWAIGSIVSGESKKLQKFMV 179 Query: 506 IRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIIS 565 + G G+GKST++N+I+ F Y + + + + +L + +V I Sbjct: 180 LYGAAGTGKSTVLNIIQQLFDGYYSV-------FDAKALGSSSNSFALEAFKTNPLVAIQ 232 Query: 566 ETNENDEI-NAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWW 624 + I + ++ + + MT + +TYS F+ NK + + + Sbjct: 233 HDGDLSRIEDNTRLNSLVSHELMTVNEKFKSTYSN-RFKCFLFMGTNKPVKITDAKSGLI 291 Query: 625 RRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKG-VKAYISKG---LDVDIPEVCL 680 RR I D + + + +E + + + S D IP L Sbjct: 292 RRLI----DVSPSGNKLNPKEYKTIVKQVEFELGAIAYHCQEVYSNNPGRYDDYIPITML 347 Query: 681 KAKEE-ERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVT 739 A + D+Y + + G L + Y Y + S R Sbjct: 348 GASNDFYNFIIDSYHVFKKEN---GTTLKAAW----EMYKTYCDDAKVG--FPFSQRVFK 398 Query: 740 LNLKQKGFIGGIKREKIEKEWKSKRIIKGLK 770 LK F +R ++ + + G + Sbjct: 399 EELKN-YFHDFQERFNLDDGTRVRSYYIGFR 428 >gi|162452339|ref|YP_001614706.1| pseudogene [Sorangium cellulosum 'So ce 56'] gi|161162921|emb|CAN94226.1| pseudogene [Sorangium cellulosum 'So ce 56'] Length = 122 Score = 93.4 bits (230), Expect = 1e-16, Method: Composition-based stats. Identities = 24/122 (19%), Positives = 51/122 (41%), Gaps = 6/122 (4%) Query: 660 LKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYS 719 ++G + + GLDV P ++A E R D + +I D C I + W E +L + Y Sbjct: 1 MRGCREWQKHGLDV--PASIMRATEAYRAENDPLRDFIKDRCVIAQEAWVEKAALRREYE 58 Query: 720 EYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVD 779 + N + + ++ + ++ G KR + + + +G+ L+ + Sbjct: 59 RWCLDNGN--KYPLGSKRFAVRIRDLGAAQSTKR--VPGHSSPRDVWRGIGLRYQGDDQP 114 Query: 780 DN 781 + Sbjct: 115 EG 116 >gi|320103976|ref|YP_004179567.1| Bifunctional DNA primase/polymerase [Isosphaera pallida ATCC 43644] gi|319751258|gb|ADV63018.1| Bifunctional DNA primase/polymerase [Isosphaera pallida ATCC 43644] Length = 629 Score = 93.0 bits (229), Expect = 2e-16, Method: Composition-based stats. Identities = 32/233 (13%), Positives = 62/233 (26%), Gaps = 26/233 (11%) Query: 10 AKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKL----PACGFGFVCGVGEQPL 65 A + G+++ P G+ P + + E+I++ P L Sbjct: 10 ALRYAELGYRVFPCAPGNSTPLTDHGFLDATTEVEQIERWWGQHPTANVAIATA----GL 65 Query: 66 YAFDIDSKDEKTANTFKDTFEIL---HGTPIVRIGQKPKILIPFRMNKEGIKKKKTTEST 122 D+D + AN + + + FR G + T Sbjct: 66 LVVDLDPAEGNAANPWLKDDPDKRLDLAAAPTAMTPRGGRHHVFRKPA-GKGWRCTASRL 124 Query: 123 QGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITV 182 +D G Y + Y+W D + L + T Sbjct: 125 APKVDTRTDGGYIIVPPSWRP-DGAYSWVPGLELDGPPDRLPEPPPWLVALLDSLAQETP 183 Query: 183 -------------PLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFY 222 P+ + +++ ++ N T EI A L ++ Sbjct: 184 TLAHVAAGGGQANPIPEGQRNATLARLGGNMRRVGMTLAEIAAALLQTNKDRC 236 >gi|125975306|ref|YP_001039216.1| hypothetical protein Cthe_2824 [Clostridium thermocellum ATCC 27405] gi|125715531|gb|ABN54023.1| hypothetical protein Cthe_2824 [Clostridium thermocellum ATCC 27405] Length = 263 Score = 93.0 bits (229), Expect = 2e-16, Method: Composition-based stats. Identities = 38/250 (15%), Positives = 65/250 (26%), Gaps = 34/250 (13%) Query: 8 EQAKQAIHNGFKLIPL-----------------RLGDKRPQRLGKWEEQLLSSEKIDKL- 49 + A + +IPL K P G ++ E+I K Sbjct: 2 DAALKYAEANIPVIPLHWICEDGSCSCKEGSNCDSKGKHPLYTGWYKNSTAYVEQIRKWW 61 Query: 50 ---PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPF 106 P G G L D+D ++T + + T L + + F Sbjct: 62 TKTPNANIGIPTGEKSDWLV-LDVDDGGDETISALEATHGKL-PDTVTAVTGSGGWHYVF 119 Query: 107 RMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLS 166 + K + LD G V + +Y W F Sbjct: 120 KYPKG--RSIPNKTKFASGLDTRSTGGLIVVAPSIHVSGNQYQWLEGHSPFD-RTLAEAP 176 Query: 167 EEDVEYLFK--------FFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFG 218 E ++ + + I V + + ++ + R T I L Sbjct: 177 EWLLKLMEREEVLLTPFEGSSIIVEIKEGNRNSTLTSLAGTMRARGMTEEGIYTALLAEN 236 Query: 219 EEFYNGSHDE 228 N + DE Sbjct: 237 NARCNPTLDE 246 >gi|291165042|gb|ADD81070.1| gp072 [Rhodococcus phage ReqiPoco6] Length = 1294 Score = 93.0 bits (229), Expect = 2e-16, Method: Composition-based stats. Identities = 48/328 (14%), Positives = 103/328 (31%), Gaps = 24/328 (7%) Query: 448 KELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKA-QRFIHI 506 K Y++K G+ S + +LV + + E +G + G K Q+F+ + Sbjct: 125 KTDYVSKRLPYCLAPGDYS-AWDELVGTLY-NVEERAKIEWAIGAIVSGDAKRIQKFLVL 182 Query: 507 RGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISE 566 G G+GKST++N+I+ F + + A + + + I + Sbjct: 183 YGPAGTGKSTVLNVIQQMFEGY------TTTFEAKALGMSSGAFATEVFKNNPLVAIQHD 236 Query: 567 TNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRR 626 + + + ++ + + MT Y + + F+ N + + + RR Sbjct: 237 GDLSRIEDNTRLNSIISHEEMTMNEKYK-PSYTARVNAFLFMGTNNPVKISDAKSGIIRR 295 Query: 627 YIVI-PFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEE 685 I + P I + + L+ ++ + P + Sbjct: 296 LIDVHPTGIKIPPNRYNTLIQKVDFELGAIAHHCLEVYRSMGKNYYNSYRPLEMMLQT-- 353 Query: 686 ERQGTDTYQAWIDDCCDI-GENLWEESHSLAKSYSEYREQELNYDRKRIST-----RTVT 739 D + +I+ DI E Y E+ + R Sbjct: 354 -----DVFFNYIEAHFDIFKEQDSVSLKQAYALYKEFCDDTGIDKVLPQYKFREELRNYF 408 Query: 740 LNLKQKGFIGGIKREKIEKEWKSKRIIK 767 K++G + G I + + + Sbjct: 409 DEFKERGVVNGQTVRSIYSGFNANKFKT 436 >gi|330470704|ref|YP_004408447.1| bifunctional DNA primase/polymerase [Verrucosispora maris AB-18-032] gi|328813675|gb|AEB47847.1| bifunctional DNA primase/polymerase [Verrucosispora maris AB-18-032] Length = 302 Score = 92.6 bits (228), Expect = 2e-16, Method: Composition-based stats. Identities = 37/233 (15%), Positives = 61/233 (26%), Gaps = 45/233 (19%) Query: 15 HNGFKLIPLRLGDKRPQRLG--------------------KWEEQLLSS-EKIDK-LP-- 50 G+ + PLR GDKRP WE++ + ++I + Sbjct: 13 ERGWHIFPLRPGDKRPAFPDHPADRCAGRDRRCRAAGQHVGWEDRATTDPDRIRRAWSTR 72 Query: 51 ACGFGFVCGVGEQPLYAFDIDSKD-----------EKTANTFKDTFEILHGTPIVRIGQK 99 G G CG L D+D+ A+ + T V G+ Sbjct: 73 PYGIGIACGP--SGLVVVDLDTPKHPAEADGRDGLAVLADLADTHGATIDPTYTVTTGR- 129 Query: 100 PKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKV 159 + ++ G + T + +D G Y VA + Y + Sbjct: 130 GGTHLYYQHPNTGPALRNTAGTVGPMVDTRAAGGYVVAAGSIVA-GRPYVVALDCDPDPL 188 Query: 160 EDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITA 212 L P+V D + R+ A Sbjct: 189 ------PAWLAGMLAPAPLPPQRPVVVDLPTDRAGAYVRAAVGREVDRVTAAA 235 >gi|29566880|ref|NP_818445.1| gp145 [Mycobacterium phage Omega] gi|29425605|gb|AAN12787.1| gp145 [Mycobacterium phage Omega] Length = 219 Score = 92.6 bits (228), Expect = 2e-16, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 53/165 (32%), Gaps = 22/165 (13%) Query: 2 PVMQWKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKL----PACGFGFV 57 P W AK G+ + PL G+KRP +++ +I K P G Sbjct: 68 PAALW--YAK---RAGWAVFPLVPGEKRPATKNGFKDATRDEAQIRKWWTENPNYNIGLP 122 Query: 58 CGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQ--KPKILIPFRMNKEGIKK 115 G DID + K E+ G G+ P+ + + Sbjct: 123 TGRAA-GFDVVDIDGPEG-----MKSLAELGEGVLPDVHGKVATPRGFHLY-VAGTDDGN 175 Query: 116 KKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVE 160 + + +D G + VA K+Y+W P ++ Sbjct: 176 RAGV---RPGIDYRSTGGFVVAVPSVV-NGKQYSWVVRPSPEILK 216 >gi|291164934|gb|ADD80963.1| gp072 [Rhodococcus phage ReqiPepy6] Length = 1294 Score = 92.6 bits (228), Expect = 2e-16, Method: Composition-based stats. Identities = 49/328 (14%), Positives = 103/328 (31%), Gaps = 24/328 (7%) Query: 448 KELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKA-QRFIHI 506 K Y++K G+ S + +LV + + E +G + G K Q+F+ + Sbjct: 125 KTDYVSKRLPYCLAPGDYS-AWDELVGTLY-NVEERAKIEWAIGAVVSGDAKRIQKFLVL 182 Query: 507 RGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISE 566 G G+GKST++N+I+ F + + A + + + I + Sbjct: 183 YGPAGTGKSTVLNVIQQMFEGY------TTTFEAKALGMSSGAFATEVFKNNPLVAIQHD 236 Query: 567 TNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRR 626 + + + ++ + + MT Y S + F+ N + + + RR Sbjct: 237 GDLSRIEDNTRLNSIISHEEMTMNEKYK-PSYTSRVNAFLFMGTNNPVKISDAKSGIIRR 295 Query: 627 YIVI-PFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEE 685 I + P I + + L+ ++ + P + Sbjct: 296 LIDVHPTGIKIPPNRYNTLIQKVDFELGAIAHHCLEVYRSMGKNYYNSYRPLEMMLQT-- 353 Query: 686 ERQGTDTYQAWIDDCCDI-GENLWEESHSLAKSYSEYREQELNYDRKRIST-----RTVT 739 D + +I+ DI E Y E+ + R Sbjct: 354 -----DVFFNYIEAHFDIFKEQDSVSLKQAYALYKEFCDDTGIDKVLPQYKFREELRNYF 408 Query: 740 LNLKQKGFIGGIKREKIEKEWKSKRIIK 767 K++G + G I + + + Sbjct: 409 DEFKERGVVNGQTVRSIYSGFNANKFKT 436 >gi|283481673|emb|CAZ69789.1| putative nucleic acid independent nucleoside triphosphatase [Emiliania huxleyi virus 99B1] Length = 675 Score = 92.6 bits (228), Expect = 2e-16, Method: Composition-based stats. Identities = 66/420 (15%), Positives = 138/420 (32%), Gaps = 44/420 (10%) Query: 283 KRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYK----KDK 338 S + SL + + + + + ++ Y K YK KD Sbjct: 149 NSSRYASLTKYETAVNIISDTDLKPHQQVENHILNQL--DNYGYRHYKKYCYKRIVTKDN 206 Query: 339 NNVYIWSLTLDKITASIMNFLVSMKE-DVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVE 397 + V+ W +K+T I N L K ++ L N N+ RF + + + Sbjct: 207 SPVFAWERK-EKVTDFIPNELTMEKNYAMYKLYTHAPSYNMNAHLSRFLTEDSKQIRFLP 265 Query: 398 ENS--------------KAKSTAQSLEAGSIFSITSDLLDS----SSRFLGE--QDGILD 437 N K + + + IT +D + +G Sbjct: 266 LNPNRHIYSCINGIYHTKHCAFYDYADEQNWPQITQQAIDRMVKYDPSAVDFVPPNGNDT 325 Query: 438 LETGQKVKPTKELYITKSTGT-PFVEG-EPSQEFLDLVSGYFESEEVMDYFTRCVGMALL 495 + + YI T ++F +++ + + ++ +G Sbjct: 326 CLRHYEYEFKHGDYINNCTDFMDIDPSVFKCRDFDNVLEYQKLTPDTIENIYGLIGRLFF 385 Query: 496 GGNKA---QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS 552 + Q + +GV GSGKS+++NLI F + + ++ Q S Sbjct: 386 ETKQYDDMQLLLFFKGVAGSGKSSVLNLISECFDPEAIGILNSNCQDQ----------FS 435 Query: 553 LIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612 L + + IVI E + N A ++Q G+ +T +Y + + + N+ Sbjct: 436 LEHIADAHIVITYEAKRDFRFNQATLQQCVSGEGVTIVRKGEKSY-DKKWTAPFVMAGNE 494 Query: 613 HLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLD 672 ++ + RR +++PF+ + +D ++ K+ + + I Sbjct: 495 LPGWKDAAGSMARRLVLVPFNHRVIEQDEELGDRMSKDILEYIPKFTIMYRQMTIRSNKK 554 >gi|159037549|ref|YP_001536802.1| bifunctional DNA primase/polymerase [Salinispora arenicola CNS-205] gi|157916384|gb|ABV97811.1| Bifunctional DNA primase/polymerase [Salinispora arenicola CNS-205] Length = 377 Score = 92.6 bits (228), Expect = 2e-16, Method: Composition-based stats. Identities = 39/266 (14%), Positives = 74/266 (27%), Gaps = 50/266 (18%) Query: 15 HNGFKLIPLRLGDKRPQRLG--------------------KWEEQLLSS-EKIDK-LPA- 51 G+++ PLR DKRP WE + + ++I + A Sbjct: 90 ARGWRVFPLRPDDKRPAFPDHPADDCTGRDPRCRNAGCHLGWEPRATTDPDRIRRAWTAR 149 Query: 52 -CGFGFVCGVGEQPLYAFDIDSKDEK----------TANTFKDTFEILHGTPIVRIGQKP 100 G G CG L D+D + A + T V G+ Sbjct: 150 PYGIGLACGPSH--LVVVDLDVPKDDSGGGPSGTDTLAALASQHGASIDATYTVTTGR-G 206 Query: 101 KILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVE 160 + +R G + T + +D G Y VA + YT + + Sbjct: 207 GTHLYYRHPDGGPDLRNTAGTLGPMVDTRAHGGYVVAAGS-TAAGRPYTVSLDTDPAPLP 265 Query: 161 DTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEE 220 +L PL + ++ + + A ++ + Sbjct: 266 A----------WLAGLLAPA--PLPPQRPVVVELPGGRERSYVRAAVERECASVTGAPDH 313 Query: 221 FYNGSHDEWIPVVMAVHHETRGSSKG 246 + + I + V + + + Sbjct: 314 HNDALYFASIALGQLVAGGSLSADEA 339 >gi|168702949|ref|ZP_02735226.1| hypothetical membrane protein [Gemmata obscuriglobus UQM 2246] Length = 805 Score = 92.6 bits (228), Expect = 2e-16, Method: Composition-based stats. Identities = 40/308 (12%), Positives = 76/308 (24%), Gaps = 52/308 (16%) Query: 10 AKQAIHNGFKLIPLRL-----------------------GDKRPQRLGKWEEQLLSSEK- 45 A G++++PL K P+ +E + + Sbjct: 12 ALDYAGRGWRVVPLHGCVADERRTDGQVGCSCGNPECGSQGKHPRLKAWQKEASVDPAQV 71 Query: 46 ---IDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIG--QKP 100 P G G E + A D+D+K + + L G + R + Sbjct: 72 GTWWAAWPEANVGVALG-PESGVVAIDVDTKAGE------QLVKELAGDAVERTALFRTG 124 Query: 101 KIL-IPFRMNKEGIKKKKTTESTQGHLD---ILGCGQYFVAYNIHPKTKKEYTWTTPPHR 156 K + + + + T G + G V + Y W Sbjct: 125 KGHRLLYAVPADLPAPPATRAVKLGGSEAVRFQSTGSQCVMPPSLHPSGNFYEWVEGRDP 184 Query: 157 FKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSC 216 P + + V + + + + N + Y + A + Sbjct: 185 AACPVAP-MPDWLVAEMCRPNSP--EWTDQGAREAFLEGKDFNRDADWYRDILEPAGFTP 241 Query: 217 FGE-----EFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDT 271 G+ F I V + + GS +S D K+ Sbjct: 242 AGQANGVMRFTRPGKRSGISVTVGHYRARDGSPALY----VFSGSIPGLDAGRCYDKFGA 297 Query: 272 FDFEEIGD 279 + G Sbjct: 298 YTKLHHGG 305 >gi|220923968|ref|YP_002499270.1| bifunctional DNA primase/polymerase [Methylobacterium nodulans ORS 2060] gi|219948575|gb|ACL58967.1| Bifunctional DNA primase/polymerase [Methylobacterium nodulans ORS 2060] Length = 970 Score = 92.3 bits (227), Expect = 3e-16, Method: Composition-based stats. Identities = 35/261 (13%), Positives = 63/261 (24%), Gaps = 42/261 (16%) Query: 10 AKQAIHNGFKLIPLRLGDKRP---------QRLGKWEEQLLSSEKIDKL----PACGFGF 56 A G+ + P K+P + G ++I P G Sbjct: 13 ALDYATRGWPVFPCSPTTKQPLTRKESAPGAKDGGLHLATTDEDQIRAWWTKHPRAMIGI 72 Query: 57 VCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRI---GQKPKILIPFRM----- 108 G + D+ T + + G + + FR Sbjct: 73 PTGARTGNVLDLDLGDPAVITGAAYLERLREHVGGIPETAIAETGSGGLHLWFRADPDAP 132 Query: 109 --------------NKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPP 154 EG + ++ +D+ G G Y + + + YTW P Sbjct: 133 IANGANICPALFIPPTEGATRADGRKAKGAAIDVRGEGGYVIVPPSVREDGRAYTWCPGP 192 Query: 155 HRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFL 214 + +E + + K + S P W A Sbjct: 193 E----DGLSPPTEALLRLMRKEEARAARDAQTEAASRGP---WAPRPADGSDPARSLAEG 245 Query: 215 SCFGEEFYNGSHDEWIPVVMA 235 + + D+ I V A Sbjct: 246 DEAVVRYGRAALDKEIAAVAA 266 >gi|125974515|ref|YP_001038425.1| hypothetical protein Cthe_2020 [Clostridium thermocellum ATCC 27405] gi|125714740|gb|ABN53232.1| hypothetical protein Cthe_2020 [Clostridium thermocellum ATCC 27405] Length = 263 Score = 92.3 bits (227), Expect = 3e-16, Method: Composition-based stats. Identities = 40/250 (16%), Positives = 64/250 (25%), Gaps = 34/250 (13%) Query: 8 EQAKQAIHNGFKLIPL-----------------RLGDKRPQRLGKWEEQLLSSEKIDKL- 49 + A + +IPL K P G ++ E+I K Sbjct: 2 DAALKYAEANIPVIPLHWICEDGSCSCKEGSNCDSKGKHPLYTGWYKNSTAYVEQIRKWW 61 Query: 50 ---PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPF 106 P G G L D+D ++T + + T L + + F Sbjct: 62 TKTPNANIGIPTGEKSDWLV-LDVDDGGDETISALEATHGKL-PDTVTAVTGSGGWHYVF 119 Query: 107 RMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLS 166 + K + LD G V + +Y W F Sbjct: 120 KYPKG--RSIPNKTKFASGLDTRSTGGLIVVAPSIHVSGNQYQWLEGHSPFD-RTPAEAP 176 Query: 167 EEDV------EYLFKFFQEITVPLVKDKKSIIPSKTWTNNN--NRQYTNREITAFLSCFG 218 + E L F+ ++ + S + T + R T I L Sbjct: 177 AWLLKLMEREEVLLTPFEGSSIIAEIKEGSRNSTLTSLAGSMRARGMTEEGIYTALLAEN 236 Query: 219 EEFYNGSHDE 228 N DE Sbjct: 237 NARCNPPLDE 246 >gi|73852933|ref|YP_294217.1| putative nucleic acid independent nucleoside triphosphatase [Emiliania huxleyi virus 86] gi|72415649|emb|CAI65886.1| putative nucleic acid independent nucleoside triphosphatase [Emiliania huxleyi virus 86] Length = 675 Score = 92.3 bits (227), Expect = 3e-16, Method: Composition-based stats. Identities = 64/386 (16%), Positives = 129/386 (33%), Gaps = 52/386 (13%) Query: 322 GHFLYTADTKAWYK----KDKNNVYIWSLTLDKITASIMNFLVSMKE-DVFDLSEEPEDN 376 ++ Y K YK KD + V+ W +K+T I N L K ++ L Sbjct: 186 DNYGYRHYKKYCYKRIITKDNSPVFAWERK-EKVTDFIPNELTMEKNYAMYKLYTHAPSY 244 Query: 377 NKNSKSPRFWFNTDYRRQNVEENS--------------KAKSTAQSLEAGSIFSITSDLL 422 N N+ RF + + + N K + + + IT + Sbjct: 245 NMNAHLSRFLTEDSKQIRFLPLNPNRHIYSCINGIYHTKHCAFYDYTDEQNWPQITQQAI 304 Query: 423 DS----SSRFLGE--QDGILDLETGQKVKPTKELYITKSTGT-PFVEG-EPSQEFLDLVS 474 D + +G + + YI T ++F +++ Sbjct: 305 DRMVKYDPSAVDFVPPNGNDTCLRHYEYEFKHGDYINNCTDFMDIDPSVFKCRDFDNVLE 364 Query: 475 GYFESEEVMDYFTRCVGMALLGGN--------KAQRFIHIRGVGGSGKSTLMNLIKYAFG 526 + + ++ L+G Q + +GV GSGKS+++NLI F Sbjct: 365 YQKLTPDTIENI-----YGLIGRLFFETKQFDDMQLLLFFKGVAGSGKSSVLNLISECFD 419 Query: 527 NQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDC 586 + + ++ Q SL + + IVI E + N A ++Q G+ Sbjct: 420 PEAIGILNSNCQDQ----------FSLEHIADAHIVITYEAKRDFRFNQATLQQCVSGEG 469 Query: 587 MTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQK 646 +T +Y + + + N+ ++ + RR +++PF+ + +D + Sbjct: 470 VTIVRKGEKSY-DKKWTAPFVMAGNELPGWKDAAGSMARRLVLVPFNHRVIEQDEELGDR 528 Query: 647 LETKYTLEAKKWFLKGVKAYISKGLD 672 + K+ + + I Sbjct: 529 MSKDILEYIPKFTIMYRQMTIRSNKK 554 >gi|153815791|ref|ZP_01968459.1| hypothetical protein RUMTOR_02036 [Ruminococcus torques ATCC 27756] gi|145846816|gb|EDK23734.1| hypothetical protein RUMTOR_02036 [Ruminococcus torques ATCC 27756] Length = 1354 Score = 91.9 bits (226), Expect = 4e-16, Method: Composition-based stats. Identities = 58/337 (17%), Positives = 112/337 (33%), Gaps = 28/337 (8%) Query: 447 TKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKA-QRFIH 505 K+ Y +K P G + L+S + E +G + G +K Q+F+ Sbjct: 122 DKKDYASKKLKYPLEAG-DLSAYNKLMSTLYSETE-RQKIEWAIGSIVCGESKKLQKFMV 179 Query: 506 IRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIIS 565 + G G+GKST++N+I+ F Y + + + + +L + +V I Sbjct: 180 LYGAAGTGKSTVLNIIQQLFEGYYSV-------FDAKALGSSSNSFALEAFKNNPLVAIQ 232 Query: 566 ETNENDEI-NAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWW 624 + I + ++ + + MT + +TYS F+ NK + + + Sbjct: 233 HDGDLSRIEDNTRLNSLVSHELMTVNEKFKSTYSN-RFKCFLFMGTNKPVKITDAKSGLI 291 Query: 625 RRYIVI-PFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAK 683 RR + + P + ++ K + D IP L A Sbjct: 292 RRLVDVSPSGNKLGPKEYKTIMKQIEFELGAIAYHCQEIYLK-NPGMYDDYIPIAMLGAS 350 Query: 684 EE-ERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNL 742 + D+Y + + G L + Y Y ++ S R L Sbjct: 351 NDFYNFIVDSYHVFKREN---GTTLKAAW----EMYKTYCDEAKVG--YPFSQRVFKEEL 401 Query: 743 KQKGFIGGIKREKIEKEWKSKRIIKGLKLKPA-FESV 778 K + K ++ R ++ + FE Sbjct: 402 KN--YFRDYKERFNMEDGSRVRSYY-IRFRTEKFEEE 435 >gi|170739472|ref|YP_001768127.1| bifunctional DNA primase/polymerase [Methylobacterium sp. 4-46] gi|168193746|gb|ACA15693.1| Bifunctional DNA primase/polymerase [Methylobacterium sp. 4-46] Length = 289 Score = 91.9 bits (226), Expect = 4e-16, Method: Composition-based stats. Identities = 36/242 (14%), Positives = 64/242 (26%), Gaps = 37/242 (15%) Query: 10 AKQAIHNGFKLIPL----------------RLGDKRPQR-------LGKWEEQLLSSEKI 46 A NG + PL + P + +++ + + Sbjct: 9 ASWLAENGAPVFPLHGILRADDGSLACTCGNPNCRHPGKHPMARFAPSGFKDATTDTRAV 68 Query: 47 DKL----PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKI 102 + P G G D+D + A E VR Sbjct: 69 RQWFEAVPGANIGMATGKVT----IIDVDPRHGGDATLAALEAEHGPLPHTVRARTGGGG 124 Query: 103 LIPFRMNKEGIKKKKTTESTQG---HLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKV 159 F G+ + LD+ G G Y VA + Y W+ H + Sbjct: 125 QHIFFRPPAGVTVGCYGDPNSPLGHGLDVRGAGGYIVAVGSDHISGGRYEWSAEHHPLRG 184 Query: 160 EDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGE 219 L E L K ++ P+ + ++ + R ++ +L C Sbjct: 185 APVAPLPEWMAARLAKPERKAARPVSEWRELVT---EGVTEGGRNTAVAKLAGYLICRHV 241 Query: 220 EF 221 +F Sbjct: 242 DF 243 >gi|227496702|ref|ZP_03926977.1| bifunctional DNA primase/polymerase [Actinomyces urogenitalis DSM 15434] gi|226833799|gb|EEH66182.1| bifunctional DNA primase/polymerase [Actinomyces urogenitalis DSM 15434] Length = 290 Score = 91.5 bits (225), Expect = 5e-16, Method: Composition-based stats. Identities = 29/207 (14%), Positives = 59/207 (28%), Gaps = 31/207 (14%) Query: 7 KEQAKQAIHNGFKLIPLRL---GDKRPQRLGKWEEQLLSSEK----IDKLPACGFGFVCG 59 +E A G++++P K P +++ S E ++ P G V Sbjct: 6 REAATAYAVAGWQVLPCHPAGDRAKSPMLTHGFKDASTSPEAVAAWWEQWPTALIGLVV- 64 Query: 60 VGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVR----IGQKPKILIPFRMNKEGIKK 115 DID ++ + + + L G G+ + + Sbjct: 65 --PPGAVVVDIDPRNLEEGSNPSTVLDDLTGPLPDTLTSWSGRGDGGRHLWFAAPALPEG 122 Query: 116 KKTTESTQGHLDILGCGQ-YFVAYNI-HPKTKKEYTWTT--------------PPHRFKV 159 ++ + +D+ G+ Y +A HP T + Y W Sbjct: 123 RRWR-NPAPGVDVKSPGRGYVIAPPSPHPATGQPYRWQDTATGYARLPLPALSALAPSDG 181 Query: 160 EDTPLLSEEDVEYLFKFFQEITVPLVK 186 ++ P L P+ + Sbjct: 182 QEGPQQPRRGPFALPWQPGTPAPPVGR 208 >gi|291335469|gb|ADD95081.1| hypothetical protein [uncultured phage MedDCM-OCT-S04-C348] Length = 231 Score = 91.5 bits (225), Expect = 6e-16, Method: Composition-based stats. Identities = 31/179 (17%), Positives = 59/179 (32%), Gaps = 19/179 (10%) Query: 18 FKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGF----GFVCGVG---EQPLYAFDI 70 + L PL G+ + W+ + S + I + G G + G DI Sbjct: 26 WPLTPL--GENKNPYKAGWQNKPFSVKDIAREIEEGVCKAVGLLGGPVYNEPYGFVWVDI 83 Query: 71 D---SKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKK-KKT-----TES 121 D + + + L T + G++ + +R+ K+ K + E Sbjct: 84 DGITVYKKIEELAGEPVAKALPPTLTICSGREGRERKLYRVPKQLWDKFIRNKYCWHAEG 143 Query: 122 TQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEI 180 + L++L V +HPKT YT V + P + + + + Sbjct: 144 NREKLEVLWKRHQGVLMGMHPKTDGYYTKEN-EDFTFVSNIPDIPAWLLTEIAIKIKSK 201 >gi|55416830|gb|AAV50480.1| helicase III/ VV D5-type ATPase (N-term) [Acanthamoeba polyphaga mimivirus] Length = 582 Score = 91.1 bits (224), Expect = 6e-16, Method: Composition-based stats. Identities = 25/273 (9%), Positives = 63/273 (23%), Gaps = 21/273 (7%) Query: 163 PLLSEEDVEYLFKFFQEITVPLVKDKKSIIPS---KTWTNNNNRQYTNREITAFLSCFGE 219 PL + ++ + + T K + + + + L Sbjct: 315 PLAIDAKLKKIKEKINNNTNNTNTHKNTAELGDHHFNFIKAVSEETLVE--AKNLVKLFS 372 Query: 220 EFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGS-TYDEENFNYKWDTFDFEEIG 278 + W V + + + E +SK+ + +E W + + Sbjct: 373 VQRATDYHTWYQVGRCLSNI---DHRLLEDWITFSKKCPSKFKKEECERLWRNMNMKPSN 429 Query: 279 ---------DTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTAD 329 + + + + K + + K + YK + + Sbjct: 430 YTMATLHYFASKDDPDKYFEMKKLKIDGLIKEGMEASH-HTIAKLLIEKYKFIYKCASIK 488 Query: 330 TKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEP--EDNNKNSKSPRFWF 387 WY+ + + L E +D + Sbjct: 489 NGIWYEFRNHRWIEIDSAYTLRNLISEVLVNEYANRQRILFGEATRQDAENKKEKFNDAV 548 Query: 388 NTDYRRQNVEENSKAKSTAQSLEAGSIFSITSD 420 N + + N+ + + I S Sbjct: 549 NITKVIKQLNNNTFKIGVIKECADMHMILIFSR 581 >gi|323485201|ref|ZP_08090552.1| hypothetical protein HMPREF9474_02303 [Clostridium symbiosum WAL-14163] gi|323401520|gb|EGA93867.1| hypothetical protein HMPREF9474_02303 [Clostridium symbiosum WAL-14163] Length = 1447 Score = 91.1 bits (224), Expect = 6e-16, Method: Composition-based stats. Identities = 59/328 (17%), Positives = 111/328 (33%), Gaps = 25/328 (7%) Query: 447 TKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKA-QRFIH 505 K+ Y +K P G + L+S + EE +G + G +K Q+F+ Sbjct: 122 NKKDYASKKLNYPLEAG-DLSAYEKLMSTLYSEEE-RTKIEWAIGSIVSGESKKLQKFMV 179 Query: 506 IRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIIS 565 + G G+GKST++N+I+ F Y + + + + +L + +V I Sbjct: 180 LYGAAGTGKSTVLNIIQQLFDGYYSV-------FDAKALGSSSNSFALEAFKTNPLVAIQ 232 Query: 566 ETNENDEI-NAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWW 624 + I + ++ + + MT + +TYS F+ NK + + + Sbjct: 233 HDGDLSRIEDNTRLNSLVSHELMTVNEKFKSTYSN-RFKCFLFMGTNKPVKITDAKSGLI 291 Query: 625 RRYIVI-PFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAK 683 RR I + P + ++ K + D IP L A Sbjct: 292 RRLIDVSPSGNKLNPKEYKTIVKQVEFELGAIAYHCQEVYLG-NPGRYDDYIPITMLGAS 350 Query: 684 EE-ERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNL 742 + D+Y + + G L + Y Y + S R L Sbjct: 351 NDFYNFIIDSYHVFKKEN---GTTLKAAW----EMYKTYCDDAKVG--FPFSQRVFKEEL 401 Query: 743 KQKGFIGGIKREKIEKEWKSKRIIKGLK 770 K F +R ++ + + G + Sbjct: 402 KN-YFHDFQERFNLDDGTRVRSYYIGFR 428 >gi|254366071|ref|ZP_04982116.1| possible phiRv1 phage protein [Mycobacterium tuberculosis str. Haarlem] gi|134151584|gb|EBA43629.1| possible phiRv1 phage protein [Mycobacterium tuberculosis str. Haarlem] Length = 240 Score = 91.1 bits (224), Expect = 6e-16, Method: Composition-based stats. Identities = 25/148 (16%), Positives = 38/148 (25%), Gaps = 11/148 (7%) Query: 340 NVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEEN 399 + W + E LS+ D + + E Sbjct: 59 GWHSWDGRRWAADDRGEAKRAVLAELRQALSDSLNDKELRADVRKC-----------ESA 107 Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTP 459 S A F+ T LDS L +G LDL T + ITK Sbjct: 108 SGVAGVLDLAAALVPFAATVADLDSDPHLLNVANGTLDLHTLKLRPHAPADRITKICRGA 167 Query: 460 FVEGEPSQEFLDLVSGYFESEEVMDYFT 487 + S + ++ E V + Sbjct: 168 YQSDTESPLWQAFLTRVLPDEGVRGFLQ 195 >gi|240145191|ref|ZP_04743792.1| putative primase [Roseburia intestinalis L1-82] gi|257202726|gb|EEV01011.1| putative primase [Roseburia intestinalis L1-82] Length = 242 Score = 91.1 bits (224), Expect = 7e-16, Method: Composition-based stats. Identities = 24/225 (10%), Positives = 72/225 (32%), Gaps = 9/225 (4%) Query: 554 IRLMGSRIVIISETNENDEINAAKIKQM-TGGDCMTARLNYGNTYSESPASFTPFIVPNK 612 L +++ + +K + T M +Y + Sbjct: 1 ADLEHIHLLVDDDMKMEVLKQTNYVKSIVTAQGKMDLERKSVQSYQGWMYARLLAFSNGD 60 Query: 613 HLFVRNPDDAWWRRYIVIPFDKPIANR--DASFAQKLETKYTLEAKKWFLKGVKAYISKG 670 + + + ++RR +++ + A+R D A+K++ W +G++ + Sbjct: 61 LQSLYDRSNGFYRRQLILTTKEKPADRVDDPDIAEKMKL-EIEGIFLWAFEGLQRLAANN 119 Query: 671 LDVDIPEVCLKAKEEERQGTDTYQAWIDD--CCDIGENLWEESHSLAKSYSEYREQELNY 728 L ++ ++ + +++ + ++ S L Y + ++ Sbjct: 120 FRFTESLRTLNNRKYVKRDANNAIDFMESTGYIRLKADMSVTSKELYAIYGIWCDENGLT 179 Query: 729 DRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773 I R+ + L + ++ +R+ L ++P Sbjct: 180 ---PIRQRSFSDFLMRNLKTYNLEHTNTVTNATGRRVWGYLGIEP 221 >gi|307294812|ref|ZP_07574654.1| Bifunctional DNA primase/polymerase [Sphingobium chlorophenolicum L-1] gi|306879286|gb|EFN10504.1| Bifunctional DNA primase/polymerase [Sphingobium chlorophenolicum L-1] Length = 694 Score = 91.1 bits (224), Expect = 7e-16, Method: Composition-based stats. Identities = 31/169 (18%), Positives = 50/169 (29%), Gaps = 12/169 (7%) Query: 6 WKEQAKQAIHNGFKLIPLRLGDKRPQ-RLGKWEEQLLSSEKIDKLPAC--GFGFVCGVGE 62 W + G IP+ DK+P + + + S E+I A G G Sbjct: 11 WNTRFSDIYRLGLSPIPVLPKDKKPAIQWKVLQTERASVEQIKVWDASSFNVGIATGRLS 70 Query: 63 QPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTEST 122 + FD D+ + + D P+ + K + G + Sbjct: 71 N-VIVFDTDNVEAEQFMANLDL-------PVTAKSKTAKGYHWMFAHP-GFAVRNHVRLE 121 Query: 123 QGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVE 171 + LD+ G G + VA Y W P P +E Sbjct: 122 KYKLDVRGDGGFIVAPPSIHPDGSIYQWVNHPMDVGFAQAPADLLALLE 170 Score = 68.8 bits (166), Expect = 3e-09, Method: Composition-based stats. Identities = 47/265 (17%), Positives = 92/265 (34%), Gaps = 33/265 (12%) Query: 432 QDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVG 491 GI D + + + + G+PS F D ++ + ++ + + Sbjct: 349 PAGIYD------HNGRPYVNSYRPSDVEPLSGDPSP-FEDFLAYLVPDQAEREHLVKYIA 401 Query: 492 MAL-LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKAN 550 + K Q I ++G G+GK+TL ++ G + ++ Sbjct: 402 WTVRYPARKLQHAILMKGAQGTGKTTLSHIWAKLVGEWNFRPTTSEEMNSGWH------- 454 Query: 551 PSLIRLMGSRIVIISETNENDEINA-AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609 L G +V++ E N + K+K + G ++ G E P Sbjct: 455 ---YFLEGKILVVLEEMNLGAGLTVYNKLKDLITGPTVSVNKK-GKDIREVPNFTNLVCF 510 Query: 610 PN--KHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLET--KYTLEAKKWFLKGVKA 665 N + + N D RR+ VI D P R+A++ ++ T K + + ++ Sbjct: 511 SNLPNPILIENDD----RRFFVI--DSPAVRREAAYYREFNTWWKENIGV---VMSFFQS 561 Query: 666 YISKGLDVDIPEVCLKAKEEERQGT 690 D P +AKE + + Sbjct: 562 VDLDDFDPMAPPPVTEAKERLKAAS 586 >gi|256377802|ref|YP_003101462.1| Bifunctional DNA primase/polymerase [Actinosynnema mirum DSM 43827] gi|255922105|gb|ACU37616.1| Bifunctional DNA primase/polymerase [Actinosynnema mirum DSM 43827] Length = 271 Score = 90.7 bits (223), Expect = 8e-16, Method: Composition-based stats. Identities = 33/214 (15%), Positives = 56/214 (26%), Gaps = 23/214 (10%) Query: 10 AKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKL---PACGFGFVCGVGEQPLY 66 A A+ G+ +IPLR G K P +++ G C L Sbjct: 7 ALAAVERGWPVIPLRPGGKAPVLRDWDRRATADPDRVRAWWARAPFNVGIAC--RGAGLL 64 Query: 67 AFDIDSKDEKTANTFKDTFEILHGTPIV-RIGQK-PKILIPFRMNKEGIKKKKTTESTQG 124 D+D ++ FE L +P+ R+G FR + Sbjct: 65 VVDLDVPGG------REVFEGLGSSPVTYRVGTPSGGEHRYFRAPPVRLGNSAGR--LGP 116 Query: 125 HLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLF-KFFQEITVP 183 +D G G Y VA + Y E V L + Sbjct: 117 RVDTRGVGGYVVAAGSAVR-GVRYRVLCDEPVAP------APEWLVAALAPAPRSPVAPA 169 Query: 184 LVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCF 217 + + + + + + + Sbjct: 170 VNPSSRRVRAYRDAVVAGEVERVRGALPGTRAHV 203 >gi|312199632|ref|YP_004019693.1| bifunctional DNA primase/polymerase [Frankia sp. EuI1c] gi|311230968|gb|ADP83823.1| Bifunctional DNA primase/polymerase [Frankia sp. EuI1c] Length = 311 Score = 90.7 bits (223), Expect = 9e-16, Method: Composition-based stats. Identities = 27/162 (16%), Positives = 46/162 (28%), Gaps = 17/162 (10%) Query: 10 AKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEK-----IDKLPACGFGFVCGVGEQP 64 A G + P+R G K P KW + + ++ PA C Sbjct: 12 ALALARRGMHVFPVRPGSKAPMV--KWGTEATVDPEVIAGWWERWPAASIAVAC--KPSG 67 Query: 65 LYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQ-KPKILIPFRMNK-EGIKKKKTTEST 122 L D+D + + T V G+ I +R + K Sbjct: 68 LTVVDVDGPAGRASWQALTARHGQAPTTSVTTGRDDGGIHYWYRAPHVDPPGNSKGLVGA 127 Query: 123 QGHLDIL----GCGQYFVAYNIHPKTKKEYTWTTPPHRFKVE 160 +D+ G G +A + + Y W ++ Sbjct: 128 --GIDVRGAGEGAGGMVLAPPSRHPSGRRYQWCDRLSLAELP 167 >gi|126727690|ref|ZP_01743522.1| Hypothetical prophage lsa1protein [Rhodobacterales bacterium HTCC2150] gi|126703106|gb|EBA02207.1| Hypothetical prophage lsa1protein [Rhodobacterales bacterium HTCC2150] Length = 184 Score = 90.7 bits (223), Expect = 9e-16, Method: Composition-based stats. Identities = 41/183 (22%), Positives = 68/183 (37%), Gaps = 21/183 (11%) Query: 8 EQAKQAIHNGFKLIPLRLGDKRPQRLG-----KWEEQLLSSEKID-KL---PACGFGFVC 58 + A G+ ++ ++ G K+P+ +W E I+ + G G VC Sbjct: 6 DAALDYASRGWPVLAIKAGTKQPRDAAVNGGPRW-NATTDLETINNRWGIADPPGIGIVC 64 Query: 59 GVGEQPLYAFDIDSKDEKTAN--TFKDTFEILHGTPIVRI---GQKPKILIPFRMNKEGI 113 G+ L DID+ D A+ T E HGT + Q + FR +G Sbjct: 65 GIDS-GLLVIDIDTDDGHGADGPTSLAALEAKHGTLPATVEAKTQSGGRHLYFRYL-DGP 122 Query: 114 KKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYL 173 + +D G G + VA T +Y W P+ ++ D P ++ + Sbjct: 123 QIGNGAGVIGPGIDHRGEGGFVVAPPSQ-GTYGDYLWVRSPNDHEIADCP---GWLIDKM 178 Query: 174 FKF 176 FK Sbjct: 179 FKK 181 >gi|298530805|ref|ZP_07018207.1| Bifunctional DNA primase/polymerase [Desulfonatronospira thiodismutans ASO3-1] gi|298510179|gb|EFI34083.1| Bifunctional DNA primase/polymerase [Desulfonatronospira thiodismutans ASO3-1] Length = 500 Score = 89.9 bits (221), Expect = 1e-15, Method: Composition-based stats. Identities = 31/196 (15%), Positives = 55/196 (28%), Gaps = 15/196 (7%) Query: 13 AIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKL----PACGFGFVCGVGEQPLYAF 68 GF + P R +K+P ++ I K P G G ++A Sbjct: 24 YAETGFPVFPCR--NKKPITDHGHKDATTDEAIIRKWWTRNPDAQIGTPTGPAS-GVWAL 80 Query: 69 DIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDI 128 D D D +T + + P R Q F + G + + +T +D+ Sbjct: 81 DEDLPDGP--DTLEQLIDTYGPLPPTRTQQTGSGGKQFLFSWNGCQVRNSTSKIGPDIDV 138 Query: 129 LGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDK 188 G G Y + + Y W + E + T + Sbjct: 139 RGDGGYIILPPSGHPSGGVYQWINELSP------AAAPDWLSELALNPRRPKTALQDTNA 192 Query: 189 KSIIPSKTWTNNNNRQ 204 + + R+ Sbjct: 193 ATFQGTAYGRAALERE 208 >gi|182436697|ref|YP_001824416.1| hypothetical protein SGR_2904 [Streptomyces griseus subsp. griseus NBRC 13350] gi|178465213|dbj|BAG19733.1| hypothetical protein [Streptomyces griseus subsp. griseus NBRC 13350] Length = 294 Score = 89.9 bits (221), Expect = 2e-15, Method: Composition-based stats. Identities = 41/261 (15%), Positives = 63/261 (24%), Gaps = 34/261 (13%) Query: 10 AKQAIHNGFKLIPLRLGDKRPQRLG---------------KWEEQLLSSEKIDK--LPAC 52 A A G+ + PLR DKRP G KWE++ + + A Sbjct: 8 ALDAAERGWHVFPLRPADKRPALHGETACSGTGDCAGGHRKWEQRATTDPDRIRAAWSAG 67 Query: 53 --GFGFVCGVGEQPLYAFDIDSKDEKT------ANTFKDTFEILHGTPI---VRIGQKPK 101 G G L D+D K T G + R Sbjct: 68 AFNVGLATGP--SGLVVVDLDPVKAKDPKGTPDGVTSLQALCERAGQTVPATYRTRTASG 125 Query: 102 ILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVED 161 + G++ + H+D G Y VA Y P + + Sbjct: 126 GHHLYFTAPPGVRLGNSAGRLGKHIDTRAHGGYVVAAGSTLPNG-AYEVVNPTDPVPLPE 184 Query: 162 --TPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGE 219 LL+ ++ N + G Sbjct: 185 WLYALLAPRQPSRGLMAVPVPVRASRYAAAALRAETAAVAGAGEGVRNWTLVRAARALGR 244 Query: 220 EFYNGSHDEWIPVVMAVHHET 240 +G D V A++ Sbjct: 245 FIPSGDLD-RSEVEAALNSAG 264 >gi|75675821|ref|YP_318242.1| ATPase [Nitrobacter winogradskyi Nb-255] gi|74420691|gb|ABA04890.1| RecA-family ATPase [Nitrobacter winogradskyi Nb-255] Length = 666 Score = 89.6 bits (220), Expect = 2e-15, Method: Composition-based stats. Identities = 51/307 (16%), Positives = 96/307 (31%), Gaps = 54/307 (17%) Query: 11 KQAIHNGFKLIPLRLGDKR-----PQRLGKWEEQLLSSEKIDKL----PACGFGFVCGVG 61 + NG L+P+ G K W E+IDK P C FG V Sbjct: 16 QYYKSNGAALVPIPAGSKIATGIISSFKHDWSRNP---EQIDKWARENPGCNFGVV--AF 70 Query: 62 EQPLYAFDIDSKDEKTANTFKDTFEILHGTPIV------RIGQKPKILIPFRMNKEGIK- 114 L DID+K + + L + + + + +G+ Sbjct: 71 ASNLIIVDIDTKGDNGREEAWALWAELCASWGLPAALVPHVQSPSGGWHVYCTVPDGVDA 130 Query: 115 -KKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYL 173 + ++ +G ++I G Y VA + + Y E L Sbjct: 131 ATLRQPDAIKGRINIRCIG-YTVAAGSYYD-GRPYQLMPGAPPP---------HPAPEGL 179 Query: 174 FKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVV 233 + T + + + +++ R++ + L+ E S+++WI + Sbjct: 180 IQHCSGGTRKVTEHRSRQG-----------EHSLRDVRSMLAWMNERDAFDSYEDWISIG 228 Query: 234 MAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYH 293 A+ G E+ Y + + KW+TF + G+ T + F Sbjct: 229 QALKICFWDD--GLELW-ESVTVAGRY---SCDQKWETFKDTDDGNAV----TLATWFQR 278 Query: 294 HGKLIPK 300 K + Sbjct: 279 ARKAGWQ 285 >gi|168703469|ref|ZP_02735746.1| hypothetical membrane protein [Gemmata obscuriglobus UQM 2246] Length = 901 Score = 89.6 bits (220), Expect = 2e-15, Method: Composition-based stats. Identities = 40/308 (12%), Positives = 75/308 (24%), Gaps = 52/308 (16%) Query: 10 AKQAIHNGFKLIPLRL-----------------------GDKRPQRLGKWEEQLLSSEK- 45 A G++++PL K P+ +E + Sbjct: 12 ALDYAGRGWRVVPLHACVADERRTDGAIGCSCGNPECGSQGKHPRLKAWQKEASADPAQV 71 Query: 46 ---IDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRI--GQKP 100 P G G E + A D+D+K + + L G + R + Sbjct: 72 GTWWAAWPEANVGVALG-PESGVVAIDVDTKAGE------QLVKELAGDAVERTVLFRTG 124 Query: 101 KIL-IPFRMNKEGIKKKKTTESTQGHLD---ILGCGQYFVAYNIHPKTKKEYTWTTPPHR 156 K + + + + T G + G V + Y W Sbjct: 125 KGHRLLYAVPADLPAPPVTRVVQLGGSEAVRFQSTGGQCVMPPSLHPSGSFYEWVEGRDL 184 Query: 157 FKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSC 216 P + + + + + + + N + Y + A + Sbjct: 185 AACPVAP-MPDWLIAEMCRPNSP--EWTDQGAREAFLEGKDFNRDADWYRDVLEPAGFTP 241 Query: 217 FGE-----EFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDT 271 G+ F I V + + GS +S D K+ Sbjct: 242 AGQANGVMRFTRPGKRAGISVTVGHYRARDGSPALY----VFSGSIPGLDAGRCYDKFGA 297 Query: 272 FDFEEIGD 279 F G Sbjct: 298 FAKLHHGG 305 >gi|42543570|pdb|1RNI|A Chain A, Bifunctional Dna PrimasePOLYMERASE DOMAIN OF ORF904 FROM The Archaeal Plasmid Prn1 Length = 216 Score = 89.6 bits (220), Expect = 2e-15, Method: Composition-based stats. Identities = 36/207 (17%), Positives = 69/207 (33%), Gaps = 26/207 (12%) Query: 8 EQAKQAIHNGFKLIPLRLGDKRP--QRLGKWEEQLLSSEKIDKLPA-----CGFGFVCGV 60 AK + +GF +IP+ K+P + K+ ++ S E+ + + G Sbjct: 6 RYAKWFLEHGFNIIPIDPESKKPVLKEWQKYSHEMPSDEEKQRFLKMIEEGYNYAIPGGQ 65 Query: 61 GEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIP--------FRMNKEG 112 + L D +SK++ A + E L + I I ++N Sbjct: 66 --KGLVILDFESKEKLKAWIGESALEELCRKTLCTNTVHGGIHIYVLSNDIPPHKINPLF 123 Query: 113 IKKKKTTESTQGHLD-ILGCGQYFVAYNIH----PKTKKEYTWTTPPHRFKVEDTPLLSE 167 + K Q + +LG G + P ++ YT + + +S+ Sbjct: 124 EENGKGIIDLQSYNSYVLGLGSCVNHLHCTTDKCPWKEQNYTTCYTLY----NELKEISK 179 Query: 168 EDVEYLFKFFQEITVPLVKDKKSIIPS 194 D++ L +F E L Sbjct: 180 VDLKSLLRFLAEKGKRLGITLSKTAKE 206 >gi|226306821|ref|YP_002766781.1| hypothetical protein RER_33340 [Rhodococcus erythropolis PR4] gi|226185938|dbj|BAH34042.1| hypothetical protein RER_33340 [Rhodococcus erythropolis PR4] Length = 290 Score = 89.6 bits (220), Expect = 2e-15, Method: Composition-based stats. Identities = 28/194 (14%), Positives = 57/194 (29%), Gaps = 26/194 (13%) Query: 2 PVMQWKEQAKQAIHNGFKLIPLRLGDKRP-QRLGKWEEQLLSSEKIDKL----PACGFGF 56 P + + A +G+ + PL DK P + +I+K G Sbjct: 18 PAGPFAQHAPALAADGWSVFPLVPRDKVPFAGSHGHRDATTDRTQIEKWTRTHADGNIGL 77 Query: 57 VCGVGEQPLYAFDIDSKDEKTANTFKDTF-EILHGTPIVRIGQKPKILIPFRMNKEGIKK 115 + + DID +A E P R+ + + + + Sbjct: 78 R---PDVGMLVVDID-----SAALLAPWMNERGLSLPPTRVVRTNRGSHYYYAHSSERPL 129 Query: 116 KKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYT-WTTPPHRFKVEDTPLLSEEDVEYLF 174 +D+ + +A K+ + Y W P L E ++++ Sbjct: 130 LAAI----PGVDLKTEKGFVLAPGSIHKSGRIYRVWRDLP-------IAELPAEWLKHIQ 178 Query: 175 KFFQEITVPLVKDK 188 + + P+V Sbjct: 179 RPEPKPRPPVVTRS 192 >gi|282890933|ref|ZP_06299447.1| hypothetical protein pah_c032o007 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281499148|gb|EFB41453.1| hypothetical protein pah_c032o007 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 159 Score = 89.6 bits (220), Expect = 2e-15, Method: Composition-based stats. Identities = 25/126 (19%), Positives = 50/126 (39%), Gaps = 6/126 (4%) Query: 417 ITSDLLDSSSRFLGEQDGILDLETG--QKVKPTKELYITKSTGTPFVEGEPSQEFLDLVS 474 + D +R + +G L L+ G K Y T + + F + Sbjct: 32 MAKHQFDIDTRAINCLNGELHLKEGTWHLQPHDKHNYRTTQIPIAYDPQATAPRFEQFLE 91 Query: 475 GYF-ESEEVMD---YFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530 F E+ + +G +LL + ++F+ + G G +GKS L+++++Y G +V Sbjct: 92 EIFQGDEDTEERKITVCELLGYSLLTSCEFEKFVILLGNGSNGKSVLLHVVEYLVGTSHV 151 Query: 531 INAEAS 536 + Sbjct: 152 SAVQPL 157 >gi|302343152|ref|YP_003807681.1| Bifunctional DNA primase/polymerase [Desulfarculus baarsii DSM 2075] gi|301639765|gb|ADK85087.1| Bifunctional DNA primase/polymerase [Desulfarculus baarsii DSM 2075] Length = 624 Score = 89.2 bits (219), Expect = 2e-15, Method: Composition-based stats. Identities = 41/231 (17%), Positives = 71/231 (30%), Gaps = 19/231 (8%) Query: 8 EQAKQAIHNGFKLIPLRLGDKRPQR-LGKWEEQLLSSEKIDKL---PACGFGFVCGVGEQ 63 E A++ G+ IP+ DKRP R +++ + + ++ P G V G Sbjct: 3 EAAQRYASLGWAAIPV-GADKRPLRPWAEYQTRRPEAGELADWFGKPGAMVGVVTGKVSN 61 Query: 64 PLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQ 123 L D D+ + + + PI P+ + ++EG+K Sbjct: 62 -LLVVDADNSEAI--SRAEALLPDGLELPIATT---PRGRHYYFAHREGMKNAVGVM--- 112 Query: 124 GHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVP 183 +D+ G Y VA P + W P + P E+ V K V Sbjct: 113 PAVDVRAEGGYVVAP---PGPGR--EWLVAPWDCAPPELPAQLEDVVRARAKERMLAGVK 167 Query: 184 LVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVM 234 + + + R E+T +D V Sbjct: 168 VDPGANLPQGERAPCSRYGRHALADELTKIALAGQGGRNRQINDSSFAVGQ 218 >gi|298508556|pdb|3M1M|A Chain A, Crystal Structure Of The Primase-Polymerase From Sulfolobus Islandicus Length = 335 Score = 89.2 bits (219), Expect = 2e-15, Method: Composition-based stats. Identities = 42/251 (16%), Positives = 80/251 (31%), Gaps = 28/251 (11%) Query: 8 EQAKQAIHNGFKLIPLRLGDKRP--QRLGKWEEQLLSSEKIDKLPA-----CGFGFVCGV 60 AK + +GF +IP+ K+P + K+ ++ S E+ + + G Sbjct: 10 RYAKWFLEHGFNIIPIDPESKKPVLKEWQKYSHEMPSDEEKQRFLKMIEEGYNYAIPGGQ 69 Query: 61 GEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIP--------FRMNKEG 112 + L D +SK++ A + E L + I I ++N Sbjct: 70 --KGLVILDFESKEKLKAWIGESALEELCRKTLCTNTVHGGIHIYVLSNDIPPHKINPLF 127 Query: 113 IKKKKTTESTQGHLD-ILGCGQYFVAYNIH----PKTKKEYTWTTPPHRFKVEDTPLLSE 167 + K Q + +LG G + P ++ YT + + +S+ Sbjct: 128 EENGKGIIDLQSYNSYVLGLGSCVNHLHCTTDKCPWKEQNYTTCYTLY----NELKEISK 183 Query: 168 EDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHD 227 D++ L +F E L +K W + L + +G Sbjct: 184 VDLKSLLRFLAEKGKRLGI--TLSKTAKEWLEGKKEEEDTVVEFEELRKELVKRDSGKPV 241 Query: 228 EWIPVVMAVHH 238 E I + Sbjct: 242 EKIKEEICTKS 252 >gi|83311028|ref|YP_421292.1| hypothetical protein amb1929 [Magnetospirillum magneticum AMB-1] gi|82945869|dbj|BAE50733.1| hypothetical protein [Magnetospirillum magneticum AMB-1] Length = 469 Score = 89.2 bits (219), Expect = 2e-15, Method: Composition-based stats. Identities = 41/285 (14%), Positives = 72/285 (25%), Gaps = 41/285 (14%) Query: 8 EQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEK-IDKL---------PACGFGFV 57 + A GFK+ PL+ K P W ++ + I G Sbjct: 9 DHALALAAKGFKVFPLQPNGKLP-IWEGWPDRATTDAATIRGWWSDPLTGGSKPYNVGVC 67 Query: 58 CGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTP--IVRIGQKPKILIPFRMN----KE 111 L D D+K K + + + GTP V I F++ E Sbjct: 68 T----SGLLVTDPDAKGGKPGLVNWEINDAIFGTPDHPVTITPTGGQHHFFKLPAGINPE 123 Query: 112 GIKKKKTTESTQG----HLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSE 167 + + + +D + V Y W V D P + Sbjct: 124 TVGNIADSAKRESPLGKGIDARSWHGFVVGAGSVID-GVPYRW--QAEAASVADLPDAPD 180 Query: 168 EDVEYLFKFF--QEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGS 225 ++ + + T + P+ Q+ E F Sbjct: 181 WIIDKCKRQVVERPDTAETPEGLTLDTPAALHRATWYLQHEAPEAVEGDGGDSTAFSVAC 240 Query: 226 H--DEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYK 268 H D + MA+ + + + E+ K Sbjct: 241 HVRDYGVSREMAL-------ELLLDHWND--RCCPPWSPEDLELK 276 >gi|315503922|ref|YP_004082809.1| bifunctional DNA primase/polymerase [Micromonospora sp. L5] gi|315410541|gb|ADU08658.1| Bifunctional DNA primase/polymerase [Micromonospora sp. L5] Length = 299 Score = 88.8 bits (218), Expect = 3e-15, Method: Composition-based stats. Identities = 33/178 (18%), Positives = 52/178 (29%), Gaps = 36/178 (20%) Query: 15 HNGFKLIPLRLGDKRPQRLG------------------KWEEQLLSS-EKIDK-LPA--C 52 G+++ PLR DKRP WE + + ++I + A Sbjct: 13 ARGWRVFPLRPDDKRPAFPDHAADDCTGRDPRCRAGHVGWEARATTDPDRIRRAWSARPY 72 Query: 53 GFGFVCGVGEQPLYAFDIDSKDEKTA----------NTFKDTFEILHGTPIVRIGQKPKI 102 G G CG L D+D+ A + T V G+ Sbjct: 73 GIGLACGP--SRLVVVDLDTPKTGGAGGRDGLTVLAELAAAHAATIDPTYTVTTGR-GGT 129 Query: 103 LIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVE 160 + +R G + T + +D G Y VA + YT + Sbjct: 130 HLYYRHPDTGPALRNTAGTLGPMVDTRAHGGYVVAPGSTVA-GRPYTVDLDTDLAPLP 186 >gi|259507777|ref|ZP_05750677.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] gi|259164570|gb|EEW49124.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] Length = 289 Score = 88.8 bits (218), Expect = 3e-15, Method: Composition-based stats. Identities = 36/254 (14%), Positives = 71/254 (27%), Gaps = 30/254 (11%) Query: 1 MPVMQW-KEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEK----IDKLPACGFG 55 +P QW A++ GFK+ PL K P +++ + +K P G Sbjct: 41 LPTNQWLPTAARRYAQLGFKVGPLN--GKVPLTPNGFKDFTTDLAQVQAWWEKWPGANIG 98 Query: 56 FVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKK 115 + + DID ++ +T+ + + ++ + + F + Sbjct: 99 ---ATPPKGMVVLDIDPRNG-GWDTWVELGGLEVPDTLMMLTGSHGLHYWFTLP--YSGD 152 Query: 116 KKTTESTQGHLDILGCGQYFVAYNI-HPKTKKEY---TWTTPPHRFKVEDTPLLSEEDVE 171 + T +D+ Y V HP T Y W TP +L Sbjct: 153 VRGTAG--EGVDVKTHTGYVVVPPSVHPTTGMHYLIAHWCTPV---------VLPTWLRA 201 Query: 172 YLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIP 231 +++K + + + Q + L D Sbjct: 202 HVYKPLPK--PVQARRVQLGESPGAGLVATVEQAGEGQRNNVLHWAACRALEDGLDLTAE 259 Query: 232 VVMAVHHETRGSSK 245 + A + Sbjct: 260 LTTAAQSIGLSDME 273 >gi|25028716|ref|NP_738770.1| hypothetical protein CE2160 [Corynebacterium efficiens YS-314] gi|23494002|dbj|BAC18970.1| conserved hypothetical protein [Corynebacterium efficiens YS-314] Length = 293 Score = 88.8 bits (218), Expect = 3e-15, Method: Composition-based stats. Identities = 36/254 (14%), Positives = 71/254 (27%), Gaps = 30/254 (11%) Query: 1 MPVMQW-KEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEK----IDKLPACGFG 55 +P QW A++ GFK+ PL K P +++ + +K P G Sbjct: 45 LPTNQWLPTAARRYAQLGFKVGPLN--GKVPLTPNGFKDFTTDLAQVQAWWEKWPGANIG 102 Query: 56 FVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKK 115 + + DID ++ +T+ + + ++ + + F + Sbjct: 103 ---ATPPKGMVVLDIDPRNG-GWDTWVELGGLEVPDTLMMLTGSHGLHYWFTLP--YSGD 156 Query: 116 KKTTESTQGHLDILGCGQYFVAYNI-HPKTKKEY---TWTTPPHRFKVEDTPLLSEEDVE 171 + T +D+ Y V HP T Y W TP +L Sbjct: 157 VRGTAG--EGVDVKTHTGYVVVPPSVHPTTGMHYLIAHWCTPV---------VLPTWLRA 205 Query: 172 YLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIP 231 +++K + + + Q + L D Sbjct: 206 HVYKPLPK--PVQARRVQLGESPGAGLVATVEQAGEGQRNNVLHWAACRALEDGLDLTAE 263 Query: 232 VVMAVHHETRGSSK 245 + A + Sbjct: 264 LTTAAQSIGLSDME 277 >gi|307592387|ref|YP_003899978.1| primase 2 [Cyanothece sp. PCC 7822] gi|306986032|gb|ADN17912.1| Primase 2 [Cyanothece sp. PCC 7822] Length = 1087 Score = 88.8 bits (218), Expect = 4e-15, Method: Composition-based stats. Identities = 26/202 (12%), Positives = 51/202 (25%), Gaps = 33/202 (16%) Query: 11 KQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSE-----------------KIDKLPACG 53 +Q I +G L + +G + W+ + + +I KL G Sbjct: 16 QQIIASGIDLPLVPIGTHKQPLGDNWQNRPYKAAQLIEALQNGGVEVPIKGEIKKLQLGG 75 Query: 54 FGFVCGVG------EQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFR 107 FG + G+ L A D D + + + T G+ + F Sbjct: 76 FGVITGLPVTVEGISYYLMALDQDGESAIAIIDQLGNGKGVPPTVAFTSGRPGRCQYLFL 135 Query: 108 MNKEGIKKKKTTE---------STQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFK 158 + +T + L+ V Y W + Sbjct: 136 VPSFYKDLIRTKKLKTAQTGDDDKPEQLEFRFANMQSVLPPSIHPVTGVYHWIEGAALGE 195 Query: 159 VEDTPLLSEEDVEYLFKFFQEI 180 V + + + + Sbjct: 196 VP-IAIAPPWVISQMLINMSRL 216 Score = 83.8 bits (205), Expect = 1e-13, Method: Composition-based stats. Identities = 67/443 (15%), Positives = 127/443 (28%), Gaps = 64/443 (14%) Query: 100 PKILIPFRMNKEGIK-KKKTTESTQGHLDILGC-GQYFVAYNIHPKTKKEYTWTTPPHRF 157 K IP +++ G K E +D+L G+Y Y + K Y P H Sbjct: 225 HKYDIPLKVDSTGTKIDGSIIERLHKKVDLLSVIGEYIPLY----ERGKNYVGHCPVHES 280 Query: 158 KVEDTPLLSEEDV-------------EYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQ 204 K + + ++ + +L + + + + T N ++ Sbjct: 281 KAPNLMVYPDKKMFTCHDCGIGGNIFNFLQLLGKSQLKETITPQSTPQKRLTNNNGHHNF 340 Query: 205 YTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEEN 264 ++N + F +D+W+ V MA+H + WS+ S Y Sbjct: 341 WSNVDWALSYLNALSPFRADDYDDWLTVGMALHSVDDS---LLKEWDNWSRSSSKYKPGE 397 Query: 265 FNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHF 324 KW +F + +L + + + +Y G Sbjct: 398 CEKKWKSFSSGGGV-------SLGTLAHLAKSDGWRSPFENN---------HRVYSNGSK 441 Query: 325 LYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKN--SKS 382 + D++ V TL ++ I+ L E + + S+ Sbjct: 442 NIAPSSSERNFVDEHTVNQGEPTLAQLIEEILAQNFDDATQDLALVELAKSYDNYNPSEI 501 Query: 383 PRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQ 442 R + S+ K+ + LE F +L D D Sbjct: 502 RAIANKLIDARHEQDYLSERKAELEQLEEHESFE-----------YLPFDDIFYDC---- 546 Query: 443 KVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQR 502 ++ + Q FL ++ V+ + L G K Sbjct: 547 -----PDVASAFKYACQVNKKIQPQYFLGILPVTAG---VIGVKGEVMAPVL-GKVKGTL 597 Query: 503 FIHIRGVGGSGKSTLMNLIKYAF 525 + I G G GKS + ++ Sbjct: 598 NLAIVGESGEGKSIVSKILISPL 620 >gi|15897097|ref|NP_341702.1| primase (amino-end fragment) [Sulfolobus solfataricus P2] gi|13813274|gb|AAK40492.1| Primase (Amino-end Fragment) [Sulfolobus solfataricus P2] Length = 405 Score = 88.4 bits (217), Expect = 4e-15, Method: Composition-based stats. Identities = 39/251 (15%), Positives = 80/251 (31%), Gaps = 30/251 (11%) Query: 1 MPVMQWKEQAKQAIHN-GFKLIPLRLGDKRP--QRLGKWEEQLLSSEKIDKLPA-----C 52 M ++W AK I GF +IP+ K+P ++ + L+ E+ +K P Sbjct: 1 MDKIEW---AKWFIDTLGFAVIPIDRDTKKPTIPNWQQYSTRALTDEEKEKFPKMIEEGY 57 Query: 53 GFGFVCGVGEQP--LYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNK 110 +G + ++ L D + K+ A + L + + L + + + Sbjct: 58 NYGIPGQMLDKNRALVILDFEDKELLKAWIGESELNKLCQNTLC-VTTPHNGLHIYAITE 116 Query: 111 EGIKKKKTT---ESTQGHLDILGCGQYFVAYNI---H--------PKTKKEYTWTTPPHR 156 E + K + +D+ Y VA H P ++Y Sbjct: 117 EFPEYKFNPAFLRENKNVMDLQSLKSYVVAPGSCINHKFCDSAKCPWKGQDYVTCYYADI 176 Query: 157 FKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSC 216 + ++E ++ K+ E L S + N + + E Sbjct: 177 TP--ERAKINEIHLKGFLKYLVEKGKKLGITPASGLLEWLGGNKKSDTEEDFEKLKEEMR 234 Query: 217 FGEEFYNGSHD 227 + + + D Sbjct: 235 KYDRYRGKTLD 245 >gi|282929010|ref|ZP_06336596.1| hypothetical protein SAPG_02823 [Staphylococcus aureus A9765] gi|282591865|gb|EFB96907.1| hypothetical protein SAPG_02823 [Staphylococcus aureus A9765] Length = 531 Score = 88.0 bits (216), Expect = 5e-15, Method: Composition-based stats. Identities = 60/521 (11%), Positives = 150/521 (28%), Gaps = 75/521 (14%) Query: 27 DKRPQRLGKWEEQLLSSEKIDKLPA-----------CGFGFVCGVGEQPLYAFDIDSKDE 75 K P ++ +S+ A G GFV DID+ + Sbjct: 42 SKIPYSYAGYKASSTNSDTWTIFDAINSIYEQNDRYDGIGFVI-SEHDNYIVLDIDNAID 100 Query: 76 KTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYF 135 +++ + + L F + ++KK +++ ++ Sbjct: 101 ESSQITSNLALDMTKMTYCEKSPSGTGLHCFFKGELPKERKKKRSDL--DIELYDNARFM 158 Query: 136 VAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSK 195 + + + EE E KS + + Sbjct: 159 TMTGESI--GQREISDDQSLLNNLVERYFKQEELPETFIGNN--------ITNKSNLDDE 208 Query: 196 TWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVH----HETRGSSKGKEIAR 251 N + +I+ L E +++ + V +H + ++ + + I Sbjct: 209 DVINIMLKSKQKDKISNLLQGNYEPYFDSPSE---AVQSLLHYLAFYTSKDKEQMERIFL 265 Query: 252 RWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAY 311 ++ + + N W + ++ + + ++ GK P L Sbjct: 266 NYNNLTDKWGSKRGNTTWGQLELDKAINNQSE------VYVKPGKENPPKL--------- 310 Query: 312 NKAMFSIYKKGHFLYTADTKAWYKK---DKNNVYIWSLTLDKITASIMNFLVSMKEDVFD 368 +W+ D N ++ T+ +V + D Sbjct: 311 ----------------IKKGSWWFYPNDDTNRKPKFNHTIMAKFICQEYHIVRYPDADSD 354 Query: 369 --LSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSS 426 + + K+ R N+++NS + ++ + S+ ++ Sbjct: 355 IYIYNTQTGIYELDKTGRKLRKIIRSLDNLKDNSVKEVRNYIVDMCDVRSVVNNE----- 409 Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEE-VMDY 485 ++ ++G++ T T ++++ T + + + + E + Sbjct: 410 -YVAVKNGLVHYHTKIFRTFTPDIFVIDKLPTAYNPNAYDEFVDTTIQKVSCNHETTIMN 468 Query: 486 FTRCVGMALLGGNKAQRFIHIRGV-GGSGKSTLMNLIKYAF 525 L + I++ G +GKST+ ++IK F Sbjct: 469 IYEMFAQVLYPKILIDKIIYLLGTVADNGKSTVQHMIKATF 509 >gi|312891663|ref|ZP_07751173.1| Bifunctional DNA primase/polymerase [Mucilaginibacter paludis DSM 18603] gi|311295847|gb|EFQ73006.1| Bifunctional DNA primase/polymerase [Mucilaginibacter paludis DSM 18603] Length = 827 Score = 88.0 bits (216), Expect = 5e-15, Method: Composition-based stats. Identities = 103/813 (12%), Positives = 233/813 (28%), Gaps = 136/813 (16%) Query: 10 AKQAIHNGFKLIPLRLGDKRPQ-RLGKWEEQLLSSEK----IDKLPACGFGFVCGVGEQP 64 A + +G LIP++ DK P + ++ ++ + + I+ +CG Sbjct: 8 ALSYLKDGISLIPVKEVDKTPFFKWKDFQSKIATEGELWTSIEFYGTSSLAIICGKVSGN 67 Query: 65 LYAFDIDSK-----DEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNK--------- 110 + D+D K D N ++ + L + I +R+ Sbjct: 68 IEVIDVDVKYKPGIDAILMNDIRNFYPDLFSRLRIHKTPSGGFHIIYRVGGHEVPGNLKL 127 Query: 111 ------------EGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFK 158 + K K L+ G G Y + K Sbjct: 128 AGRPTLEAEIELQKAKGVKRPNKEVNFLETRGEGGYIL-----------SDLCNGYTLHK 176 Query: 159 VEDTPLLSEED---VEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFL- 214 P+++ E+ + L + + EI K K + + N Y N L Sbjct: 177 DNPIPVITWEERCSLITLCQTYNEIIKEAPKPKPNKSQESIYDENPFEHYNNTVNPTELL 236 Query: 215 -------SCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNY 267 S + + + V A ++++ + ++ Y+ Sbjct: 237 SGFGWKFSHENPHYIWYTRPDKDKGVSASWNKSKRIFYIFTSSTEL-QESRGYNPATVLS 295 Query: 268 KWD---------TFDFEEIGDTAKKRSTFTSLFYHH--GKLIPKGLLASRFS--DAYNKA 314 + F + KK+ + G IP + + Sbjct: 296 ELKFDGDKSKTYYFLTQNGFGKVKKQVEQGLVKKAALSGSGIPANFSPDAKKTFEDLKIS 355 Query: 315 MFSIYKKGHFLYTADTKAW-------YKKDKN---NVYIWSLTLDKITASIMNFLVSMKE 364 + + G F + + Y+ Y + K I + Sbjct: 356 LHDDHPHGIFWEQDENDRFRIDRLGLYEVANKLGFATYRGDIVRIK-DRLIYKVTPRLFY 414 Query: 365 DVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSD---L 421 D + ED N + R S ++ +I T D Sbjct: 415 DTLRDYIKEEDGNLYKDICNAYEAFIQR-----SGDFTISRINQIDENNILKDTYDTCYK 469 Query: 422 LDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEE 481 L ++ DG ++ + ++ I + ++L+ + + Sbjct: 470 LYINTAVKITADGYKEVPYSEIIEHIWHDKIMQR-KWDMSIVPSEFKYLEFLHYAIGIND 528 Query: 482 VMDYFTRCVGMALLGGNKAQRFIHIRG----------VGGSGKSTLMNLIKYAFGNQYVI 531 + + +G L NK + +I GGSGK+ N+++ Sbjct: 529 QVK---KVIGY-LSHDNKDENTGYIITLVEKCPDPKMGGGSGKNIFGNILRN-------- 576 Query: 532 NAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARL 591 + + + + L G R+ +++ + + + + +K+M+ G + + Sbjct: 577 ---TTTVCTVAGSQVKFSEKLLQSWNGERVFFMADVPK--KFDFSYLKEMSTGYGL-VKK 630 Query: 592 NYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA---NRDASFAQKL- 647 + + S P ++ N + + D RR I + F D F Sbjct: 631 LWKDDRS-VGPDEMPKLLVNTNFSFDDSDGGLKRRIIPLEFTDFFTRCGGVDVHFNCMFP 689 Query: 648 ---------ETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQA--- 695 K + + + V+ Y++ + E+ E++ + + Sbjct: 690 TSNNSNSGWTEKDWMGFDCFIAECVQQYLAANCKITPTELSHGGWEKQFKQQ--FGQHTF 747 Query: 696 -WIDDCCDI-GENLWEESHSLAKSYSEYREQEL 726 +I++ + +++ + Y +RE+ Sbjct: 748 EFINENFERWTNSVFISTKEFNNEYKAFREENN 780 >gi|284174333|ref|ZP_06388302.1| primase (amino-end fragment) [Sulfolobus solfataricus 98/2] Length = 382 Score = 88.0 bits (216), Expect = 5e-15, Method: Composition-based stats. Identities = 39/251 (15%), Positives = 80/251 (31%), Gaps = 30/251 (11%) Query: 1 MPVMQWKEQAKQAIHN-GFKLIPLRLGDKRP--QRLGKWEEQLLSSEKIDKLPA-----C 52 M ++W AK I GF +IP+ K+P ++ + L+ E+ +K P Sbjct: 1 MDKIEW---AKWFIDTLGFAVIPIDRDTKKPTIPNWQQYSTRALTDEEKEKFPKMIEEGY 57 Query: 53 GFGFVCGVGEQP--LYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNK 110 +G + ++ L D + K+ A + L + + L + + + Sbjct: 58 NYGIPGQMLDKNRALVILDFEDKELLKAWIGESELNKLCQNTLC-VTTPHNGLHIYAITE 116 Query: 111 EGIKKKKTT---ESTQGHLDILGCGQYFVAYNI---H--------PKTKKEYTWTTPPHR 156 E + K + +D+ Y VA H P ++Y Sbjct: 117 EFPEYKFNPAFLRENKNVMDLQSLKSYVVAPGSCINHKFCDSAKCPWKGQDYVTCYYADI 176 Query: 157 FKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSC 216 + ++E ++ K+ E L S + N + + E Sbjct: 177 TP--ERAKINEIHLKGFLKYLVEKGKKLGITPASGLLEWLGGNKKSDTEEDFEKLKEEMR 234 Query: 217 FGEEFYNGSHD 227 + + + D Sbjct: 235 KYDRYRGKTLD 245 >gi|13242580|ref|NP_077594.1| EsV-1-109 [Ectocarpus siliculosus virus 1] gi|13177383|gb|AAK14527.1|AF204951_109 EsV-1-109 [Ectocarpus siliculosus virus 1] Length = 606 Score = 87.6 bits (215), Expect = 7e-15, Method: Composition-based stats. Identities = 47/392 (11%), Positives = 118/392 (30%), Gaps = 49/392 (12%) Query: 366 VFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIF--SITSDLLD 423 + + K + + ++ + + L+ Sbjct: 173 IGSFPTHAWEELCEIKGIVRFLCDKETHCEMWKHCNMGGNYEQCVKYLANCCDLEFPDLN 232 Query: 424 SSSRFLGEQDGILDLETGQKVKPTKE-LYITKSTGTPFVEG-----------EPSQEFLD 471 + R DGI D +E S + + F Sbjct: 233 AKRRVWSFNDGIYDATEDTFTTYDQEIDEHLVSCKIIYKDFYDVYFSTPSRAADKLNFSQ 292 Query: 472 L----VSGYFE----SEEVMDYFTRCVG---MALLGGNKAQRFIHIRGVGGSGKSTLMNL 520 L F+ ++++ + VG + + Q ++GV G+GKST++ + Sbjct: 293 LKTPLFDSIFQPQRWDQDMLWWMYVFVGRLFYEVSELDSWQVIPFMKGVAGTGKSTVIKV 352 Query: 521 IKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQ 580 I+ N+ + +++I + L + I ++ E + ++ A + Sbjct: 353 IQ-MMYNRADVGVISNNIEKKFG---------LSTIYNKTIFVVPELKGDFAMDQADFQS 402 Query: 581 MTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR- 639 M G+ ++ + G+ + + + N+ + + RR +V PF + Sbjct: 403 MVTGETLSMPVKNGSPITGV-WTTPGIMAGNESAKWEDKSGSISRRIVVFPFSHKVPEDK 461 Query: 640 -DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDV-------DIPEVCLKAKEEERQGTD 691 + +++ + K AY +P + K++ + T+ Sbjct: 462 VNPGLMDEIQDTELPAIIR---KSALAYRDAVQRFGNGDIWQALPSRIREQKKKLQYSTN 518 Query: 692 TYQAWID-DCCDIGENLWEESHSLAKSYSEYR 722 A+I+ D + + + + Sbjct: 519 PLFAFINSDNVSLSDEEYTLESIFVTKLKSFA 550 >gi|331648291|ref|ZP_08349380.1| virulence-associated E family protein [Escherichia coli M605] gi|331042840|gb|EGI14981.1| virulence-associated E family protein [Escherichia coli M605] Length = 728 Score = 87.6 bits (215), Expect = 8e-15, Method: Composition-based stats. Identities = 82/624 (13%), Positives = 152/624 (24%), Gaps = 118/624 (18%) Query: 33 LGKWEEQLLSSEKIDKL---PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILH 89 + +W +++ + P G G A D DS+DE + T L Sbjct: 63 IAQWTSHVVTEHDFARWSNEPDYGICVRTG---HGWLALDCDSEDEDIQADIRKTLVQLL 119 Query: 90 G--TPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKE 147 G P K L ++ + K+ G +++L GQ FVA H + Sbjct: 120 GELPPRRWRANSNKCLYLLAVDGDFRKRIHRLAGDMGIIELLANGQQFVACGTH-SSGAR 178 Query: 148 YTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTN 207 W ++ P ++ E +E L++ E V + + + + Sbjct: 179 IEWDGGL----PDEPPAITGEQLETLWQRLAEQLPVSVTTEAGSTKMRDRSTFTPGATDD 234 Query: 208 -REITAFLSCFGEEFYNGSHDEW--IPVVMAVHH------ETRGSSKGKE--IARRWSKQ 256 E + NG + G + G E + Sbjct: 235 TAEYLDANGWTLLDGANGERYIRCPFEDGHSTGGDPTSTVYFPGGTAGFEQGHFKCLHAS 294 Query: 257 GSTYDEENFNYKW----DTFD--FEEIGDTAKKRSTFTSLFYHHGKLIPKGLLAS--RFS 308 + D+ +F D F+ F + + + R Sbjct: 295 CAHRDDGDFLNAIGIRNDDFEDLTSTEVAEPLPLPAFERDKWGRIEATISNAAKAVVRPD 354 Query: 309 DAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFD 368 F ++ A + W +IT F +E + D Sbjct: 355 FVDIDIRFDQFRDEIMFAQAGSGQWQAFTD-----ADYARLRITMEKRGFKPVGRELIRD 409 Query: 369 LSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRF 428 + D + +I + D R Sbjct: 410 VVLLAAD-------------------------------EQPFDSAITWLNGLEWDGVPRI 438 Query: 429 LGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTR 488 + TP+ + Sbjct: 439 ECF-----------------YHTHFGTADTPYTRAVSMYMWT-----------------A 464 Query: 489 CVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGK 548 G L G KA + G G GKS+ + + + + + + E Sbjct: 465 LAGRVLEPGIKADMVPILVGPQGCGKSSGVEAL----------SPDPAFFTEISFAEKDD 514 Query: 549 ANPSLIR-LMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPF 607 L R + G + I E + IK Y ++ P Sbjct: 515 ---DLARKMRGRLVAEIGELRGLNTKELESIKAFVTRTHENWIPKYREFATQFPRRLVFV 571 Query: 608 IVPNKHLFVRNPDDAWWRRYIVIP 631 N+ F+ + RR++ + Sbjct: 572 GTTNEDEFLADKTG--NRRWLPVE 593 >gi|23014441|ref|ZP_00054257.1| hypothetical protein Magn03008885 [Magnetospirillum magnetotacticum MS-1] Length = 286 Score = 87.6 bits (215), Expect = 8e-15, Method: Composition-based stats. Identities = 38/286 (13%), Positives = 71/286 (24%), Gaps = 38/286 (13%) Query: 9 QAKQAIHNGFKLIPL-----RLGD--------------KRPQR---LGKWEEQLLSSEKI 46 A + G ++PL R G K P ++ E + Sbjct: 7 HAHLYLSLGLAVLPLHFPFEREGSLQCSCGKATCRQPAKHPFGQLAKNGLKDSSRDPETV 66 Query: 47 DKLPAC---GFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRI-GQKPKI 102 + G G + A D+D + + E P R Sbjct: 67 QRWFDGRSLNIGIATGTIS-GIIALDVDPRHDGDTTLAGLEAEHGPLPPTWRFLTGGGGE 125 Query: 103 LIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDT 162 I FR + LD+ G G Y VA +++ Y + H V Sbjct: 126 HILFRHPGGTVANSAGL--LGPGLDVRGDGGYIVAPPSRHISRRAYAISVDHHPNDVLLA 183 Query: 163 PLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFY 222 P E+L + + + + + T A L+ Sbjct: 184 P-----PPEWLMQRLSRRKPAAKDAPQERTDWRGHVGATHAEGTRNTALASLTGHLLRNR 238 Query: 223 NGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYK 268 + +M + + + S + + + + Sbjct: 239 VDPFA--VLDLMLCWNRAHCNPPLDD--DEVSATVRSIARKEIDRR 280 >gi|213692010|ref|YP_002322596.1| pancreatic ribonuclease [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213523471|gb|ACJ52218.1| pancreatic ribonuclease [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320458120|dbj|BAJ68741.1| hypothetical phage protein [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 760 Score = 87.6 bits (215), Expect = 8e-15, Method: Composition-based stats. Identities = 49/340 (14%), Positives = 100/340 (29%), Gaps = 50/340 (14%) Query: 17 GF-KLIPLRLGDKRPQRLG--KWEEQLLSSEKIDKL----PACGFGFVCGVGEQPLYAFD 69 G+ ++IPL G K P G + ++ E++ P G V + + D Sbjct: 18 GWMQVIPLPEGHKTPPPSGFTGRSRKPVTDEQVQVWSQATPNANTGIVI---PEGVLVLD 74 Query: 70 IDSKD-----EKTANTFKDTFEILHGTPIVRIGQ-----KPKILIPFRMNKEGIKKKKTT 119 ID++ A + + L P P + +++ + Sbjct: 75 IDAEQGHRVKADGAKGISELSQELGALPATWSSTAHGIDSPARHLFYKVPEGL----AWK 130 Query: 120 ESTQGHLDILGCG-QYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSE--EDVEYLFKF 176 +DIL G +Y V + + + Y W TP P +S+ + Sbjct: 131 GGAIEGVDILQPGHRYSVVWPSIHPSGEMYCWYTPSGSTT-SQIPHISDLATLPWKWVDY 189 Query: 177 FQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGS-----HDEWIP 231 ++ K T ++ Y R A + + N + HD + Sbjct: 190 LRKPEHTTPKPA-----FNTLISHETGTYDTRMCKAINTFLNKTLSNPASKGSRHDTTLQ 244 Query: 232 VVMAVHH--------ETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKK 283 V A+ + ++ K E +W + +K Sbjct: 245 AVWALVNFAQEGHRGALDAINQLKPRFIAEIAPDRPGKEREAAREWAAI----LSGAMEK 300 Query: 284 RSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGH 323 + S + + +L F++ + + + H Sbjct: 301 VNGIQSHADPCEQSKIERMLPGEFNELTQNTIANQMGESH 340 >gi|260845231|ref|YP_003223009.1| putative replication protein [Escherichia coli O103:H2 str. 12009] gi|257760378|dbj|BAI31875.1| probable replication protein [Escherichia coli O103:H2 str. 12009] Length = 728 Score = 87.6 bits (215), Expect = 8e-15, Method: Composition-based stats. Identities = 82/629 (13%), Positives = 156/629 (24%), Gaps = 128/629 (20%) Query: 33 LGKWEEQLLSSEKIDKL---PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILH 89 + +W +++ + P G G A D DS+DE + T L Sbjct: 63 IAQWTGHVVTEHDFARWSNEPDYGICVRTG---HGWLALDCDSEDEDIQADIRKTLVQLL 119 Query: 90 G--TPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKE 147 G P K L ++ + K+ G +++L GQ FVA H + Sbjct: 120 GESPPRRWRANSNKCLYLLAVDGDFRKRIHRLAGDMGIIELLANGQQFVACGTH-SSGAR 178 Query: 148 YTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTN 207 W ++ P ++ E +E L++ E V + + + + Sbjct: 179 IEWDGGL----PDEPPAITGEQLETLWQRLAEQLPVSVTTEAGNTKMRDRSAFTPGATDD 234 Query: 208 -REITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEE--- 263 E + NG +I H + G + + +++ Sbjct: 235 TAEYLDANGWTLLDGANGER--YIRCPFEDGHSSGGDPT---STVYFPAGTAGFEQGHFK 289 Query: 264 ----NFNYKWDTFDFEEIGDTAKKRSTFTSL--------------FYHHGKLIPKGLLAS 305 + ++ D IG TS+ + + + Sbjct: 290 CLHASCAHRDDGDFLNAIGIRNDDFEDLTSIEVAEPLPLPAFERDKWGRIEATISNAAKA 349 Query: 306 --RFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMK 363 R F ++ A + W +IT F + Sbjct: 350 VVRSDFVDIDIRFDQFRDEIMFAPAGSGQWRAFTD-----ADYARLRITMEKRGFKPVGR 404 Query: 364 EDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLD 423 E + D+ D + +I + D Sbjct: 405 ELIRDVVLLAAD-------------------------------EQPFDSAITWLNGLEWD 433 Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVM 483 R + TP+ + Sbjct: 434 GVPRIECF-----------------YHTHFGTADTPYTRAVSMYMWT------------- 463 Query: 484 DYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP 543 G L G KA + G G GKS+ + + + + + + Sbjct: 464 ----ALAGRVLEPGIKADMVPILVGPQGCGKSSGVEAL----------SPDPAFFTEISF 509 Query: 544 PEAGKANPSLIR-LMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602 E L R + G + I E + IK Y ++ P Sbjct: 510 AEKDD---DLARKMRGRLVAEIGELRGLNTKELESIKAFVTRTHENWIPKYREFATQFPR 566 Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIVIP 631 N+ F+ + RR++ + Sbjct: 567 RLVFVGTTNEDEFLADKTG--NRRWLPVE 593 >gi|126347806|emb|CAJ89526.1| putative DNA primase/helicase [Streptomyces ambofaciens ATCC 23877] Length = 286 Score = 87.2 bits (214), Expect = 9e-15, Method: Composition-based stats. Identities = 36/221 (16%), Positives = 62/221 (28%), Gaps = 19/221 (8%) Query: 359 LVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSIT 418 L + + RQ + + + I Sbjct: 21 RHHAAHPFRLLDVHHVEPRHRRHQADGRRAEAHHRQLALSTTGINAMLTQATSAPGMVIN 80 Query: 419 SDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE 478 + LLD+ L DG++DL TG P T P+ + ++ F Sbjct: 81 AALLDADPYALCTPDGMVDLRTGLVKAPDPPRTSTHGPPPSDPRTMPTPRWERFLADAFG 140 Query: 479 -SEE---VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534 E ++ F +G ++ G Q + G GKS L++++ G+ Sbjct: 141 EDAEAQHMVSDFQLLLGYSVTGDVGGQVPPLLFDSGTIGKSVLLDVLMRLLGDYADAAP- 199 Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA 575 S L G R + SE D+ Sbjct: 200 --------------LGFSWHALHGRRAIFCSEVKHGDKYTE 226 >gi|218555124|ref|YP_002388037.1| hypothetical protein ECIAI1_2654 [Escherichia coli IAI1] gi|218361892|emb|CAQ99492.1| conserved hypothetical protein; putative virulence-associated protein E [Escherichia coli IAI1] Length = 728 Score = 87.2 bits (214), Expect = 9e-15, Method: Composition-based stats. Identities = 82/629 (13%), Positives = 156/629 (24%), Gaps = 128/629 (20%) Query: 33 LGKWEEQLLSSEKIDKL---PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILH 89 + +W +++ + P G G A D DS+DE + T L Sbjct: 63 IAQWTGHVVTEHDFARWSNEPDYGICVRTG---HGWLALDCDSEDEDIQADIRKTLVQLL 119 Query: 90 G--TPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKE 147 G P K L ++ + K+ G +++L GQ FVA H + Sbjct: 120 GELPPRRWRANSNKCLYLLAVDGDFRKRIHRLAGDMGIIELLANGQQFVACGTH-SSGAR 178 Query: 148 YTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTN 207 W ++ P ++ E +E L++ E V + + + + Sbjct: 179 IEWDGGL----PDEPPAITGEQLETLWQRLAEQLPVSVTTEAGNTKMRDRSAFTPGATDD 234 Query: 208 -REITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEE--- 263 E + NG +I H + G + + +++ Sbjct: 235 TAEYLDANGWTLLDGANGER--YIRCPFEDGHSSGGDPT---STVYFPAGTAGFEQGHFK 289 Query: 264 ----NFNYKWDTFDFEEIGDTAKKRSTFTSL--------------FYHHGKLIPKGLLAS 305 + ++ D IG TS+ + + + Sbjct: 290 CLHASCAHRDDGDFLNAIGIRNDDFEDLTSIEVAEPLPLPAFERDKWGRIEATISNAAKA 349 Query: 306 --RFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMK 363 R F ++ A + W +IT F + Sbjct: 350 VVRPDFVDIDIRFDQFRDEIMFAPAGSGQWRAFTD-----ADYARLRITMEKRGFKPVGR 404 Query: 364 EDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLD 423 E + D+ D + +I + D Sbjct: 405 ELIRDVVLLAAD-------------------------------EQPFDSAITWLNGLEWD 433 Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVM 483 R + TP+ + Sbjct: 434 GVPRIECF-----------------YHTHFGTADTPYTRAVSMYMWT------------- 463 Query: 484 DYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP 543 G L G KA + G G GKS+ + + + + + + Sbjct: 464 ----ALAGRVLEPGIKADMVPILVGPQGCGKSSGVEAL----------SPDPAFFTEISF 509 Query: 544 PEAGKANPSLIR-LMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602 E L R + G + I E + IK Y ++ P Sbjct: 510 AEKDD---DLARKMRGRLVAEIGELRGLNTKELESIKAFVTRTHENWIPKYREFATQFPR 566 Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIVIP 631 N+ F+ + RR++ + Sbjct: 567 RLVFVGTTNEDEFLADKTG--NRRWLPVE 593 >gi|324014360|gb|EGB83579.1| virulence-associated protein E [Escherichia coli MS 60-1] Length = 730 Score = 87.2 bits (214), Expect = 9e-15, Method: Composition-based stats. Identities = 84/626 (13%), Positives = 154/626 (24%), Gaps = 122/626 (19%) Query: 33 LGKWEEQLLSSEKIDKL---PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILH 89 + +W +++ + P G G A D DS+DE + T L Sbjct: 63 IAQWTGHVVTEHDFARWSNEPDYGICVRTG---HGWLALDCDSEDEDIQADIRKTLVQLL 119 Query: 90 G--TPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKE 147 G P K L ++ + K+ G +++L GQ FVA H + Sbjct: 120 GELPPRRWRANSNKCLYLLAVDGDFRKRIHRLAGDMGIIELLANGQQFVACGTH-SSGAR 178 Query: 148 YTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTN 207 W ++ P ++ E +E L++ E V + + + + Sbjct: 179 IEWDGGL----PDEPPAITGEQLETLWQRLAEQLPVSVTTEAGNTKMRDRSAFTPGATDD 234 Query: 208 -REITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSK----------GKE--IARRWS 254 E + NG +I H + G G E + Sbjct: 235 TAEYLDANGWTLLDGANGER--YIRCPFEDGHSSGGDPTSTVYFPAGTAGFEQGHFKCLH 292 Query: 255 KQGSTYDEENFNYKW----DTFD--FEEIGDTAKKRSTFTSLFYHHGKLIPKGLLAS--R 306 + D+ +F D F+ F + + + R Sbjct: 293 ASCAHRDDGDFLNAIGIRNDDFEDLTSTEVAEPLPLPAFERDKWGRIEATISNAAKAVVR 352 Query: 307 FSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDV 366 F ++ A + W +IT F +E + Sbjct: 353 PDFVDIDIRFDQFRDEIMFAPAGSGQWRAFTD-----ADYARLRITMEKRGFKPVGRELI 407 Query: 367 FDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSS 426 D+ D + +I + D Sbjct: 408 RDVVLLAAD-------------------------------EQPFDSAITWLNGLEWDGVP 436 Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYF 486 R + TP+ + Sbjct: 437 RIECF-----------------YHTHFGTADTPYTRAVSMYMWT---------------- 463 Query: 487 TRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEA 546 G L G KA + G G GKS+ + + + + + + E Sbjct: 464 -ALAGRVLEPGIKADMVPILVGPQGCGKSSGVEAL----------SPDPAFFTEISFAEK 512 Query: 547 GKANPSLIR-LMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFT 605 L R + G + I E + IK Y ++ P Sbjct: 513 DD---DLARKMRGRLVAEIGELRGLNTKELESIKAFVTRTHENWIPKYREFATQFPRRLV 569 Query: 606 PFIVPNKHLFVRNPDDAWWRRYIVIP 631 N+ F+ + RR++ + Sbjct: 570 FVGTTNEDEFLADKTG--NRRWLPVE 593 >gi|155371013|ref|YP_001426547.1| hypothetical protein ATCV1_Z066R [Acanthocystis turfacea Chlorella virus 1] gi|155124333|gb|ABT16200.1| hypothetical protein ATCV1_Z066R [Acanthocystis turfacea Chlorella virus 1] Length = 598 Score = 87.2 bits (214), Expect = 9e-15, Method: Composition-based stats. Identities = 37/308 (12%), Positives = 88/308 (28%), Gaps = 29/308 (9%) Query: 367 FDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITS-DLLDSS 425 ++ + + K+ + ++E + T +L S Sbjct: 225 RNMHSYRQVYEIKEFVYSRLRKEISFEHWSKGTQNMKNISSAVEYLTNCHDTQLPVLHKS 284 Query: 426 SRFLGEQDGILDLETGQKV-------KPTKELYITKSTGTPFVEGEPSQEFLD---LVSG 475 +G+ + + + K F + F + Sbjct: 285 RGTYAFTNGVYIASEDRFHCFETSETPLSDSVVACKFFEMKFDNTQYDDWFDIPTPHLDS 344 Query: 476 YFE----SEEVMDYFTRCVGMALLGGN---KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 +EV + +G L N Q G+ G+GKS L+ + F Sbjct: 345 VMNHQQWPKEVQMWLLCLIGRVLYRTNEIDSWQVCPFFVGLAGTGKSLLVLKVIKQFFET 404 Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588 + +++I + + +V E + I A+ + + G+ ++ Sbjct: 405 VDVGILSNNIERKFG---------ISAFYDKMLVCAPEIRNDLAIEQAEFQSIVSGEEIS 455 Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLE 648 + + + + + N+ + + RR +V F +P+ D ++KL Sbjct: 456 VAVKFQKAFLQ-EWDVPIVLAGNEVPGWADAGGSIQRRLVVFEFKQPVKEGDMKLSEKLY 514 Query: 649 TKYTLEAK 656 Sbjct: 515 R-EMPNII 521 >gi|332976117|gb|EGK12985.1| N- superfamily bifunctional DNA primase/polymerase [Desmospora sp. 8437] Length = 798 Score = 87.2 bits (214), Expect = 9e-15, Method: Composition-based stats. Identities = 32/225 (14%), Positives = 65/225 (28%), Gaps = 13/225 (5%) Query: 24 RLGDKRPQRLGKWEEQLLSSEKIDK-LPA---CGFGFVCGVGEQPLYAFDIDSKDEKTAN 79 + K P E I K G G L+A D+D + + Sbjct: 45 KSNGKHPLLESWAEHATADPAAIQKMWEKNSWANVGVPMGKV-NGLFAIDVDGPEGQ--E 101 Query: 80 TFKDTFEILHGTPIVR--IGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVA 137 T + + P + + + +R+ K G++ + + ++DI G G VA Sbjct: 102 TLQKWIQEHGELPATWQVLTGGGGMQLWYRVPK-GMEIPNSVKKIGINVDIRGTGGQSVA 160 Query: 138 YNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFF--QEITVPLVKDKKSIIPSK 195 ++ Y W ++ E VE + + Q+ + I S Sbjct: 161 PGSLHQSGNRYRWAPTRGPEDLK-PSAPPEWLVEKIREVIADQQQAKLSKIQTEEINLSL 219 Query: 196 TWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHET 240 + + + + + MA+ + Sbjct: 220 SPKGKPKFEKLLQLRKSSKKFREILEGEKTFRSPSERDMAMANIA 264 >gi|239834270|ref|ZP_04682598.1| ATPase-like protein [Ochrobactrum intermedium LMG 3301] gi|239822333|gb|EEQ93902.1| ATPase-like protein [Ochrobactrum intermedium LMG 3301] Length = 727 Score = 87.2 bits (214), Expect = 1e-14, Method: Composition-based stats. Identities = 36/243 (14%), Positives = 65/243 (26%), Gaps = 38/243 (15%) Query: 8 EQAKQAIHNGFKLIPLRLGD---------------KRPQRLGKWEEQLLSS----EKIDK 48 + A + + P R D K P + L+ E + Sbjct: 14 DVALAYAARNWPVFPCRAADEEFVDEDGLIEILATKTPLTSNGFRGATLNERIVRELWRR 73 Query: 49 LPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRM 108 P G G + DID K E + F Sbjct: 74 NPGAMIGVPTGAPI-GAWVLDIDPKHGGPDTLAALEAEHGALPATLTAETTSGGRHYFFK 132 Query: 109 NKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEE 168 +K G + + +D+ G G Y +A P + Y W + Sbjct: 133 HKAG---VRNRGALGAGIDVRGDGGYVIAACSVPAVGQPYRWLVDMEPVD------APDW 183 Query: 169 DVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDE 228 +E + P D ++ + + + N +Y R + + L E G+ + Sbjct: 184 LLELVL--------PRSYDSTTMYQAPSVSGTINDRYVERAVQSELDDLAMEPM-GNRNN 234 Query: 229 WIP 231 + Sbjct: 235 RLN 237 >gi|191172659|ref|ZP_03034198.1| replication protein [Escherichia coli F11] gi|190907132|gb|EDV66732.1| replication protein [Escherichia coli F11] Length = 684 Score = 87.2 bits (214), Expect = 1e-14, Method: Composition-based stats. Identities = 84/626 (13%), Positives = 154/626 (24%), Gaps = 122/626 (19%) Query: 33 LGKWEEQLLSSEKIDKL---PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILH 89 + +W +++ + P G G A D DS+DE + T L Sbjct: 17 IAQWTGHVVTEHDFARWSNEPDYGICVRTG---HGWLALDCDSEDEDIQADIRKTLVQLL 73 Query: 90 G--TPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKE 147 G P K L ++ + K+ G +++L GQ FVA H + Sbjct: 74 GELPPRRWRANSNKCLYLLAVDGDFRKRIHRLAGDMGIIELLANGQQFVACGTH-SSGAR 132 Query: 148 YTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTN 207 W ++ P ++ E +E L++ E V + + + + Sbjct: 133 IEWDGGL----PDEPPAITGEQLETLWQRLAEQLPVSVTTEAGNTKMRDRSAFTPGATDD 188 Query: 208 -REITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSK----------GKE--IARRWS 254 E + NG +I H + G G E + Sbjct: 189 TAEYLDANGWTLLDGANGER--YIRCPFEDGHSSGGDPTSTVYFPAGTAGFEQGHFKCLH 246 Query: 255 KQGSTYDEENFNYKW----DTFD--FEEIGDTAKKRSTFTSLFYHHGKLIPKGLLAS--R 306 + D+ +F D F+ F + + + R Sbjct: 247 ASCAHRDDGDFLNAIGIRNDDFEDLTSTEVAEPLPLPAFERDKWGRIEATISNAAKAVVR 306 Query: 307 FSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDV 366 F ++ A + W +IT F +E + Sbjct: 307 PDFVDIDIRFDQFRDEIMFAPAGSGQWRAFTD-----ADYARLRITMEKRGFKPVGRELI 361 Query: 367 FDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSS 426 D+ D + +I + D Sbjct: 362 RDVVLLAAD-------------------------------EQPFDSAITWLNGLEWDGVP 390 Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYF 486 R + TP+ + Sbjct: 391 RIECF-----------------YHTHFGTADTPYTRAVSMYMWT---------------- 417 Query: 487 TRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEA 546 G L G KA + G G GKS+ + + + + + + E Sbjct: 418 -ALAGRVLEPGIKADMVPILVGPQGCGKSSGVEAL----------SPDPAFFTEISFAEK 466 Query: 547 GKANPSLIR-LMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFT 605 L R + G + I E + IK Y ++ P Sbjct: 467 DD---DLARKMRGRLVAEIGELRGLNTKELESIKAFVTRTHENWIPKYREFATQFPRRLV 523 Query: 606 PFIVPNKHLFVRNPDDAWWRRYIVIP 631 N+ F+ + RR++ + Sbjct: 524 FVGTTNEDEFLADKTG--NRRWLPVE 547 >gi|222528751|ref|YP_002572633.1| Bifunctional DNA primase/polymerase [Caldicellulosiruptor bescii DSM 6725] gi|222455598|gb|ACM59860.1| Bifunctional DNA primase/polymerase [Caldicellulosiruptor bescii DSM 6725] Length = 287 Score = 86.9 bits (213), Expect = 1e-14, Method: Composition-based stats. Identities = 24/206 (11%), Positives = 56/206 (27%), Gaps = 13/206 (6%) Query: 33 LGKWEEQLLSSEKIDKL----PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEIL 88 ++ K+ + P G G + D+D + K + Sbjct: 57 PNGVKDATKDISKVKEWWLKKPWANIGIATGKIS-GFFVLDVDGEIGKEELRALEVEYDK 115 Query: 89 HGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEY 148 + ++ I F+ + + + +DI G G Y V K+ +Y Sbjct: 116 LPDTVEQLTGSGGKHILFKYPENIV--IQNKVGFIPKVDIRGDGGYIVVAPSIHKSGNQY 173 Query: 149 TWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNR 208 W H +V + + ++ + + K+ + Y N Sbjct: 174 MWEAFSHPLEV-EIAEPPKWLIDMIAEK-----PSTPDGKRPPEWWRKLAQGVPEGYRNM 227 Query: 209 EITAFLSCFGEEFYNGSHDEWIPVVM 234 + + + N + + Sbjct: 228 SAASLMGLLLRKRINPVLATMLVIAW 253 >gi|302559042|ref|ZP_07311384.1| N- superfamily bifunctional DNA primase/polymerase [Streptomyces griseoflavus Tu4000] gi|302476660|gb|EFL39753.1| N- superfamily bifunctional DNA primase/polymerase [Streptomyces griseoflavus Tu4000] Length = 296 Score = 86.9 bits (213), Expect = 1e-14, Method: Composition-based stats. Identities = 35/240 (14%), Positives = 56/240 (23%), Gaps = 35/240 (14%) Query: 15 HNGFKLIPLRLGDKRPQRLG---------------KWEEQLLSS-----EKIDKLPACGF 54 G+ ++PLR G KRP G KWE++ + P Sbjct: 18 ACGWPVLPLRPGGKRPALHGENACPRTGPCAGGHLKWEQRATTDPDRIRAAWAAGP-FNV 76 Query: 55 GFVCGVGEQPLYAFDIDSKDEKTANTFKDT----FEILHGTPI---VRIGQKPKILIPFR 107 G G L D+D T G P+ + + Sbjct: 77 GIATGPA--GLLVIDLDKPKSSADTPCGVTTFTALCERTGQPVPTTRTVRTASGGRHLYF 134 Query: 108 MNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSE 167 GI+ T + +D G Y VA Y + L + Sbjct: 135 TAPAGIRLGNTAGALAPLVDTRAHGGYVVAPGSTTPAG-TYEVIHDDPVLPLPA--WLLK 191 Query: 168 EDVEYLFKFFQEITVPLVKDKKSIIPSKTW--TNNNNRQYTNREITAFLSCFGEEFYNGS 225 + T + ++ N ++ G G Sbjct: 192 AVAPAPAQPVSLSTPRCGNRLADTVLAREVAAVATAQEGGRNAQLLTSARAVGRFVAWGD 251 >gi|260063427|ref|YP_003196507.1| hypothetical protein RB2501_01425 [Robiginitalea biformata HTCC2501] gi|88782871|gb|EAR14045.1| hypothetical protein RB2501_01425 [Robiginitalea biformata HTCC2501] Length = 754 Score = 86.9 bits (213), Expect = 1e-14, Method: Composition-based stats. Identities = 78/658 (11%), Positives = 178/658 (27%), Gaps = 79/658 (12%) Query: 62 EQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPF-RMNKEGIKKKKTTE 120 + D+D++D + E + L+ + +++ E + Sbjct: 71 HSGIIGIDLDAEDNADLLANRARLEQDPHCYACHTSIRGFGLVWYVKVSPEKHLEAFQA- 129 Query: 121 STQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEI 180 ++ QY V P V +S + + Sbjct: 130 -----IERYLANQYGVV--------------VDPSGKDVSRLRFISYDPH----LYLNRG 166 Query: 181 TVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYN--GSHDEWIPVVMAVHH 238 + K Y + +I L N + W+ A+ Sbjct: 167 SKKWSKYLNKKQREFREAPARAIAYHDEDIRHILEQIQNRGVNIAEDYHSWLHTSFALAS 226 Query: 239 ETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLI 298 E G++ S Q S Y+ + ++D + + FY+ + Sbjct: 227 EFGEG--GRDYFHIVSAQSSKYERGKCDKQYD----IALRRDHTGGVGIGTFFYYCQQAG 280 Query: 299 PKGLLASRFSDAY--NKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIM 356 + + + + S T+ + + L+KI + Sbjct: 281 IETRTPATIEAEIYYAQRLKSEPGIDRKEAIRSTEEYLQMRGVEPERTREALEKIKDIPV 340 Query: 357 NFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFS 416 + +++ + L E + + + E+ S + F+ Sbjct: 341 HQFQTVQVNDKVLELETFIKSLGLRFNEITRYYESGEGEQLEDRDYNSLYRKAMHAVGFN 400 Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY 476 ++ L D L ++ K TG + G Sbjct: 401 VSQSKL------FALMDSDLITSYNPFTSFFRDNKHLKPTGCLEELLACFDYEKPDLDGV 454 Query: 477 --FESEEVMDYFTRCVGMALLG------GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 E EE DY + LLG G + + + G G+GK+ + Sbjct: 455 ALTEDEEAADYLEVFLTRWLLGIISAMNGTFSLLVLVLTGEQGTGKTKFFRNL------- 507 Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISET-NENDEINAAKIKQMTGGDCM 587 S + K N + LM +++I + + ++ A + K++ + Sbjct: 508 ----LPESLSSYQTENKLNKEN-DIAPLMTKKLIICDDEFSGKNKRQADEFKELVSKEKF 562 Query: 588 TARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKL 647 + R YG + + N + + RR I + I + D ++ Sbjct: 563 SVRKPYGKVWEDLTRYAVLCGTSNDDRVLYDMTG--NRRIIPV----KIRSIDHDRMAEI 616 Query: 648 ETKYTLEAKKWFLKGV-KAY---ISKGLDVDIPEVC-------LKAKEEERQGTDTYQ 694 + W + + + + + ++ + ++ + TD+ Sbjct: 617 DKTELFMELYWMWRDLGDKWMLGKKERIYLNKCTGIHESENFEMDMVQKYFEPTDSLG 674 >gi|302343670|ref|YP_003808199.1| Bifunctional DNA primase/polymerase [Desulfarculus baarsii DSM 2075] gi|301640283|gb|ADK85605.1| Bifunctional DNA primase/polymerase [Desulfarculus baarsii DSM 2075] Length = 626 Score = 86.5 bits (212), Expect = 1e-14, Method: Composition-based stats. Identities = 40/232 (17%), Positives = 73/232 (31%), Gaps = 30/232 (12%) Query: 8 EQAKQAIHNGFKLIPLRLGDKRPQR-LGKWEEQLLSSEKIDKL---PACGFGFVCGVGEQ 63 E A++ G+ IP+ DKRP R +++ + + + P G V G Sbjct: 3 EAAQRYASLGWAAIPV-GADKRPLRPWAEYQTRRPEAGALADWFGKPGAMVGIVTGKVSN 61 Query: 64 PLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQ 123 L D D+ + + + PI P+ + ++EG+K Sbjct: 62 -LLVIDADNSEAI--SRVEALLPDGLEMPIATT---PRGRHYYFAHREGMKNAVGVM--- 112 Query: 124 GHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVP 183 +D+ G Y VA P + W P + P E+ V K Sbjct: 113 PAVDVRAEGGYVVAP---PGPGR--EWLVAPWDCAPPELPAQLEDVVRARAK-------- 159 Query: 184 LVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMA 235 +++ + + + RE + DE + +A Sbjct: 160 ---ERQIASLKQGDVAPDPVRANLREREKGRDSRSRYGRHALADELTKIALA 208 >gi|262043412|ref|ZP_06016537.1| virulence-associated E family protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|259039238|gb|EEW40384.1| virulence-associated E family protein [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] Length = 729 Score = 86.5 bits (212), Expect = 2e-14, Method: Composition-based stats. Identities = 86/626 (13%), Positives = 161/626 (25%), Gaps = 122/626 (19%) Query: 33 LGKWEEQLLSSEKIDKL---PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILH 89 + W E +++ + P G G A D DS+D +D L Sbjct: 63 IKDWTEHVVTEHDFARWSKEPDYGICVRTG---NGWLALDCDSEDVDVQQKIRDLLAQLL 119 Query: 90 G--TPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKE 147 G P R K L + + K+ E G +++L GQ FVA H + Sbjct: 120 GVVPPRRRRANSNKCLYLLGVEGDFRKRIHRLEGELGIIELLANGQQFVACGTH-SSGAR 178 Query: 148 YTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTN 207 W +D P ++ + +E L++ ++ V + + + Sbjct: 179 IEWDNEL----PDDPPAVTTDQLETLWQQLADVLPVSVTTEAGSSKMRDRSTFTPGATDE 234 Query: 208 -REITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSK----------GKEIARRWSKQ 256 E + NG +I H T G G ++ Sbjct: 235 TAEYLDANGWTLLDGTNGER--YIRCPFEDGHSTGGDPTSTVYFPAGTAGFDLGHFKCLH 292 Query: 257 GSTYDEEN------FNYKWDTFD--FEEIGDTAKKRSTFTSLFYHHGKLIPKGLLAS--R 306 S + + D F+ F + + + R Sbjct: 293 ASCAHRNDGDYLNAIGIRTDDFEDLTSTEVAEPLPLPAFERDKWGRIEATISNAAKAVVR 352 Query: 307 FSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDV 366 F ++ A + W +IT F +E + Sbjct: 353 PDFVDIDIRFDQFRDEIMFAPAGSGQWQAFTDP-----DYARLRITMEKRGFKAVGRELI 407 Query: 367 FDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSS 426 D+ D DS++ Sbjct: 408 RDVVLLAAD-------------------------------------------EQPFDSAT 424 Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYF 486 +L +G L+ + +++ + + TP+ + Sbjct: 425 TWL---NG-LEWDGVPRIEHFYHTHFG-TADTPYTRAVSMYMWT---------------- 463 Query: 487 TRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEA 546 G L G KA + G G GKS+ + + + + + + E Sbjct: 464 -ALAGRVLEPGIKADMVPILVGRQGCGKSSGVEAL----------SPDPAFFTEISFAEK 512 Query: 547 GKANPSLIR-LMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFT 605 L R + G + I E + IK Y ++ P Sbjct: 513 DD---DLARKMRGRLVAEIGELRGLNTKELESIKAFVTRTHENWIPKYREFATQFPRRLV 569 Query: 606 PFIVPNKHLFVRNPDDAWWRRYIVIP 631 N+ F+ + RR++ + Sbjct: 570 FIGTTNEDEFLADKTG--NRRWLPVE 593 >gi|315640373|ref|ZP_07895488.1| prophage Lp4 protein 7 [Enterococcus italicus DSM 15952] gi|315483878|gb|EFU74359.1| prophage Lp4 protein 7 [Enterococcus italicus DSM 15952] Length = 265 Score = 86.5 bits (212), Expect = 2e-14, Method: Composition-based stats. Identities = 36/229 (15%), Positives = 61/229 (26%), Gaps = 33/229 (14%) Query: 12 QAIHNGFKLIPLRLGDKRPQRLGKWE--------EQLLSSEKIDKLPACGFGFVCGVGEQ 63 + GFK++PL+ K P + + E P G G Sbjct: 6 DYLQAGFKVLPLQSNKKIPFTTETFTNGFKSATNDIQALKEHWVNYPESNLGIRVGEDT- 64 Query: 64 PLYAFDIDSKDEKTANTFKDTFEILHGTP-IVRIGQKPKILIPFRMNKEGIKKKKTTEST 122 L DID + T ++ P + + + EGI+ ++ Sbjct: 65 GLIVLDIDVHEVDGYKTLSAIEKVHEPLPNTLEVATPTGGKHYYFKLPEGIQIERQINQF 124 Query: 123 QGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITV 182 G +DIL G Y VA K+Y + + + ++ Sbjct: 125 AG-IDILTNG-YVVAPPSSID-GKKYEIVNGS----LNEIAIFPTWFLKVFDTKKMNELP 177 Query: 183 PLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIP 231 + AFL G ++WI Sbjct: 178 VKPFFTVGKKYTG----------------AFLDELVAGCAKGGRNDWIM 210 >gi|220922585|ref|YP_002497887.1| bifunctional DNA primase/polymerase [Methylobacterium nodulans ORS 2060] gi|219947192|gb|ACL57584.1| Bifunctional DNA primase/polymerase [Methylobacterium nodulans ORS 2060] Length = 970 Score = 86.1 bits (211), Expect = 2e-14, Method: Composition-based stats. Identities = 33/261 (12%), Positives = 63/261 (24%), Gaps = 42/261 (16%) Query: 10 AKQAIHNGFKLIPLRLGDKRP---------QRLGKWEEQLLSSEKIDKL----PACGFGF 56 A G+ + P K+P + G +I P G Sbjct: 13 ALDYAIRGWPVFPCSPTTKQPLTRKESAPGAKDGGLHLATTDEAQIRAWWAKHPRAMIGI 72 Query: 57 VCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRI---GQKPKILIPFRM----- 108 G + D+ T + + G + + FR Sbjct: 73 PTGARTGNVLDLDLGDPAVITGAAYLERLREHVGGIPETAIAETGSGGLHLWFRADPDAP 132 Query: 109 --------------NKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPP 154 EG + ++ +D+ G G Y + + + YTW P Sbjct: 133 IANGANICPALFIPPAEGATRADGRKAKGAAIDVRGEGGYVIVPPSVREDGRAYTWCPGP 192 Query: 155 HRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFL 214 + +E + + K + S P W ++ Sbjct: 193 E----DGLSPPTEALLRLMRKEEARAARDAQAEAASRGP---WVPRPTDSIDPAQVLLDG 245 Query: 215 SCFGEEFYNGSHDEWIPVVMA 235 + + D+ + V A Sbjct: 246 DEAVVRYGRAALDKEVAAVAA 266 >gi|289704576|ref|ZP_06501009.1| bifunctional DNA primase/polymerase [Micrococcus luteus SK58] gi|289558696|gb|EFD51954.1| bifunctional DNA primase/polymerase [Micrococcus luteus SK58] Length = 686 Score = 86.1 bits (211), Expect = 2e-14, Method: Composition-based stats. Identities = 41/252 (16%), Positives = 72/252 (28%), Gaps = 31/252 (12%) Query: 8 EQAKQAIHNGFKLIPLRL-GDKRPQRLGKWEEQLLSSEKIDKLP------ACGFGFVCGV 60 + A+Q G +IP+R G K P W+ ++ +D G CG Sbjct: 7 DTARQMHAAGVNVIPVRHDGTKAPALKA-WQSHRTTAADLDAWFGGDDPRHRAIGAACGA 65 Query: 61 GEQPLYAFDI---------DSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNK- 110 L +I D A + +E ++G R + +R+ Sbjct: 66 LSGGLEMLEIEGAHVGLLEDVGRAAGAAGLLELWERVNGGWCERSP-SGGVHWFYRVEGM 124 Query: 111 --EGIKKKKTTESTQGHLDILGCGQYFVAYNI---HPKTKKEYTWTTPPHRFKVEDTPLL 165 G K TE+ Q + G G V KT + + P L Sbjct: 125 DVPGNVKLAATEARQTIAETRGQGGQVVLAPSGGTTHKTGRAWERLDGG----PATVPTL 180 Query: 166 SEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGS 225 + + E L F+ + +++ T ++ A + + E Sbjct: 181 TAAERETLHGLFRALDR---APARTVEHRPASTLAPADGARPGDLYAARTTWDELLTRHG 237 Query: 226 HDEWIPVVMAVH 237 H Sbjct: 238 WQVHHRAGAETH 249 >gi|282892589|ref|ZP_06300862.1| hypothetical protein pah_c272o028 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281497713|gb|EFB40082.1| hypothetical protein pah_c272o028 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 420 Score = 85.7 bits (210), Expect = 3e-14, Method: Composition-based stats. Identities = 41/393 (10%), Positives = 108/393 (27%), Gaps = 38/393 (9%) Query: 157 FKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSC 216 +++ L + ++ +++ I + + ++ Sbjct: 36 NRIKSNGCLWNDVFRAWIAPIKDKKAVESIFRENNISYEIKEISAPNSIIPKDAKTANLQ 95 Query: 217 FGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEE 276 E + + ++ S+ E+F + + + Sbjct: 96 TCSEIL-------------LRKIFDEERELLADVYQY---DSSLRPEDF-KNPPSIEEKT 138 Query: 277 IGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLY------TADT 330 + + + + + SD K + + + Sbjct: 139 EVQIQLENDFHRRFLDLEKQKEKQKSINNIISDQSEKILCHDAPVNTAKFLIKDSFSHQE 198 Query: 331 KAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTD 390 + + N+ ++W T +++ + E+ + + + Sbjct: 199 ERTIQFCSNSFWLWKGTHYVEIDP-----NKIRQITYKFLEDAKVFKN--TCLKNFNPNQ 251 Query: 391 YRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQK------V 444 + + + +A+ + A I + +S + +GI +E K + Sbjct: 252 NKVTQIIDALRAECFFEHHPANGTIWIDGRQIPNSRYVISFPNGIFSIEDWLKDEKIALI 311 Query: 445 KPTKELYITKSTGTPFVEGEPSQ-EFLDLVSGYF-ESEEVMDYFTRCVGMALLGGNKAQR 502 PT L T F E+L + + E E + +G L K Q+ Sbjct: 312 PPTPSLLNTSCLDFNFDPNATEPKEWLKFLESLWSEDIESQNAIQEWMGYLLTQDTKHQK 371 Query: 503 FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535 + I G +GK T+ +++ G V Sbjct: 372 ILLIVGPPRAGKGTIARILETLLGASNVAGPTL 404 >gi|326330159|ref|ZP_08196470.1| putative prophage Lp4 protein 7, DNA replication [Nocardioidaceae bacterium Broad-1] gi|325951972|gb|EGD44001.1| putative prophage Lp4 protein 7, DNA replication [Nocardioidaceae bacterium Broad-1] Length = 302 Score = 85.7 bits (210), Expect = 3e-14, Method: Composition-based stats. Identities = 30/203 (14%), Positives = 62/203 (30%), Gaps = 16/203 (7%) Query: 10 AKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKL----PACGFGFVCGVGEQPL 65 A + G + P G K+P ++ + E+++ P G G + Sbjct: 28 AATLANAGIPVFPCVPGAKQPLTAHGFKSATAAVEQVNDWWSKSPTANIGIPTGAVS-GI 86 Query: 66 YAFDIDSKDEKTANTFKDTFEI--LHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQ 123 D+D + T + L + + L + + + ++ Sbjct: 87 AVVDVDVHGADSGFTAFNRAHRAGLVDAWELLVRTPSGGLHAYFSPAKA--EMRSWSLPA 144 Query: 124 GHLDILGCGQYFVAYNIH---PKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEI 180 HLD G G Y VA P ++ Y ++ L + + + + + Sbjct: 145 QHLDFRGDGGYIVAPPSRITTPDGERSY----GLIAVAQHESRPLDADRLRTFLEPVRIV 200 Query: 181 TVPLVKDKKSIIPSKTWTNNNNR 203 P + + P + NR Sbjct: 201 QPPASLTRDGVRPDRLAAWVANR 223 >gi|218295952|ref|ZP_03496732.1| Bifunctional DNA primase/polymerase [Thermus aquaticus Y51MC23] gi|218243690|gb|EED10218.1| Bifunctional DNA primase/polymerase [Thermus aquaticus Y51MC23] Length = 298 Score = 85.7 bits (210), Expect = 3e-14, Method: Composition-based stats. Identities = 42/168 (25%), Positives = 59/168 (35%), Gaps = 18/168 (10%) Query: 8 EQAKQAIHNGFKLIPLRLGDKRPQR---LGKWEEQLLSSEKIDKL----PACGFGFVCGV 60 E A G+ + PL G+KRP +E I K P CG G + Sbjct: 12 EAAVAYARLGYAVFPLTPGEKRPHGRLVPHGLKEASREEATITKWWRSCPGCGVGIL--- 68 Query: 61 GEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120 + + D D D K + L P R + F + ++ T Sbjct: 69 APEEVLVLDFD--DPTAWERLKGEYPTLGDAPRQRTPKGG--YHVFLRLPQRVRLSATVR 124 Query: 121 STQGHLDILGCGQ-YFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSE 167 G +D+ G G+ Y VA + YTW P K ED PL+ E Sbjct: 125 KLAG-VDLRGMGKAYVVASPTRLADGRGYTWEVPL--VKPEDLPLIPE 169 >gi|145592628|ref|YP_001156925.1| hypothetical protein Strop_0062 [Salinispora tropica CNB-440] gi|145301965|gb|ABP52547.1| hypothetical protein Strop_0062 [Salinispora tropica CNB-440] Length = 391 Score = 85.7 bits (210), Expect = 3e-14, Method: Composition-based stats. Identities = 42/235 (17%), Positives = 61/235 (25%), Gaps = 55/235 (23%) Query: 2 PVMQWKEQAKQAIHNGFKLIPLRLGDKRPQRLG------------------KWEEQLLSS 43 +E A A G+ + PLR DKRP WE + + Sbjct: 79 DATTLREVALAAALRGWHIFPLRPDDKRPAFPDHLADACTGRDPRCRNGHTGWEARATTD 138 Query: 44 -EKIDK-LPAC--GFGFVCGVGEQPLYAFDIDSKDEK-------------TANTFKDTFE 86 ++I + G G CG L D+D + + Sbjct: 139 PDRIRRGWSETPWGVGIACGP--SGLVVIDLDVRKPDQDAPPGNPHPAATSGIDVFAALC 196 Query: 87 ILHGTPI------VRIGQKPKILIPFRMNKEGIKKKKTTESTQGH----LDILGCGQYFV 136 G PI V G+ + FR + + T +D G Y V Sbjct: 197 ETAGQPIPDDTYAVTTGR-GGSHLYFRHPADSPALRNTAGERGNGLGWLVDTRAHGGYVV 255 Query: 137 AYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSI 191 A + YT L E L P+V D + Sbjct: 256 AAGSTVA-GRSYTVARDLP------VAELPGWLAERLAPAPLPPQRPVVVDLPTG 303 >gi|124378237|ref|YP_001029430.1| GfV-D2-ORF1 [Glypta fumiferanae ichnovirus] gi|124270644|dbj|BAF45566.1| GfV-D2-ORF1 [Glypta fumiferanae ichnovirus] Length = 694 Score = 85.7 bits (210), Expect = 3e-14, Method: Composition-based stats. Identities = 53/364 (14%), Positives = 105/364 (28%), Gaps = 45/364 (12%) Query: 288 TSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLT 347 + K + ++R +A+F ++ Y +Y D IW Sbjct: 351 DKDDDNIVTKNVKNVDSTRSEVELVRALFDVFPNLSIYYRYSHNTFYYCDA-KTNIWD-- 407 Query: 348 LDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQ 407 + + F +++ + + E NV Sbjct: 408 ----SLTNDEFYHHIQQTLKSRIQLTEAE----------------LINVTTKDTIVKIID 447 Query: 408 SLEAGSIFSITSDLLDSSSRFLGEQDGILDLE--TGQKVKPTKELYITKSTGTPFVEGEP 465 + + LDS S + +D+ E I ++ G + Sbjct: 448 IIMRKIEDVDFTKQLDSLSHIFVTDNKAIDMSIFPPVMRSIRCEDLIKRTNGWTYDPDLS 507 Query: 466 SQE---FLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGV--GGSGKSTLMNL 520 + + +F + L G + + + G SGKSTL L Sbjct: 508 HKYKKSVQSYFNKLLPKPCEQIWFLSFIARMLNGKRSQEPCVILTDKRRGKSGKSTLTYL 567 Query: 521 IKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQ 580 + FGN Y+ ++ + ++ L R+ + + ++ + IK Sbjct: 568 LHAVFGNYYLNDSIIESLGKS-------------NLENKRLFVADGSKKDKTLTGDFIKS 614 Query: 581 MTGGDCMTARLNYGNTYSESPASFTPFIVP--NKHLFVRNPDDAWWRRYIVIPFDKPIAN 638 + D +TA NT+S P IV + L D R + P + Sbjct: 615 IINSDYVTAEDTNCNTHSIFPIQAGLIIVSPKHDVLICDTNDKDLLNRIVTCPMRSRFVS 674 Query: 639 RDAS 642 + + Sbjct: 675 KKKN 678 >gi|318060883|ref|ZP_07979604.1| hypothetical protein SSA3_23263 [Streptomyces sp. SA3_actG] gi|318075930|ref|ZP_07983262.1| hypothetical protein SSA3_04265 [Streptomyces sp. SA3_actF] Length = 296 Score = 85.7 bits (210), Expect = 3e-14, Method: Composition-based stats. Identities = 31/172 (18%), Positives = 48/172 (27%), Gaps = 29/172 (16%) Query: 15 HNGFKLIPLRLGDKRPQRLG---------------KWEEQLLSS-EKIDK-LP--ACGFG 55 G+ + PLR G KRP G WE++ + ++I + G Sbjct: 14 ERGWPVFPLRPGSKRPALHGETRCPRSGPCASGHLGWEQRATTDPDRIRRAWASGDYNVG 73 Query: 56 FVCGVGEQPLYAFDIDSK-----DEKTANTFKDTFEILH-GTPIVRIGQKP-KILIPFRM 108 G L D+D A + E P R + P + Sbjct: 74 LATGPA--NLLVVDLDVPKPGAEGPDGAAHLRALTERHGQPMPSTRTVRTPSGGAHLYFP 131 Query: 109 NKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVE 160 + T + +D G Y VA T + Y P + Sbjct: 132 APLAARLHNTAGTLAPLVDTRAWGGYVVAPGSILPTGR-YESVAPFALRPLP 182 >gi|184200566|ref|YP_001854773.1| hypothetical protein KRH_09200 [Kocuria rhizophila DC2201] gi|183580796|dbj|BAG29267.1| hypothetical protein [Kocuria rhizophila DC2201] Length = 301 Score = 85.3 bits (209), Expect = 3e-14, Method: Composition-based stats. Identities = 35/209 (16%), Positives = 62/209 (29%), Gaps = 30/209 (14%) Query: 7 KEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPA-CGFGFVCGVGEQPL 65 ++ +GF L+PL G+KRP + + ++D+ P G G CG L Sbjct: 27 RDHLYALAIHGFHLLPLIPGEKRPAITDWEKRATVDPAQLDRWPKGAGVGIACGR--SGL 84 Query: 66 YAFDIDSKD------------EKTANTFKDTFEILHGT-----PIVRIGQKPKILIPFRM 108 D DS + F D + + + FR Sbjct: 85 VVIDCDSHGSTPPPEWDRPGIRDGVDVFADLWSRHSPNVSMFDTFTVTTPSGGLHLYFRA 144 Query: 109 NKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEE 168 + + + +D+ G Y + K YT P L + Sbjct: 145 PVG--SRIRNRTGVEWQVDVRAHGGYACGPGTNLKQG-TYTPAGDPG-----KLLPLPQW 196 Query: 169 DVEYLF--KFFQEITVPLVKDKKSIIPSK 195 + L + Q +P+ +S + Sbjct: 197 LHDMLAPQEPAQRRPMPVAPPTRSQADRR 225 >gi|291453089|ref|ZP_06592479.1| hypothetical protein SSHG_03382 [Streptomyces albus J1074] gi|291356038|gb|EFE82940.1| hypothetical protein SSHG_03382 [Streptomyces albus J1074] Length = 288 Score = 85.3 bits (209), Expect = 4e-14, Method: Composition-based stats. Identities = 28/186 (15%), Positives = 45/186 (24%), Gaps = 35/186 (18%) Query: 15 HNGFKLIPLRLGDKRPQRLG---------------KWEEQLLSSEKIDK--LP--ACGFG 55 G+ + PLR G KRP WE + + + G Sbjct: 5 ERGWPVFPLRPGGKRPALHPETRCPHAGACTNGHVTWERRATTDPDRIRAAWSTGDWNIG 64 Query: 56 FVCGVGEQPLYAFDID----SKDEKTANTFKDTFEILHGTPI---VRIGQKPKILIPFRM 108 G L D+D D G P+ + + Sbjct: 65 LATGPA--RLVVIDLDKPKDGTDAPDGAANLLALCEHAGQPVPTTRTVRTASGGTHLYFS 122 Query: 109 NKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEE 168 +G + + T + +D G Y +A Y P + Sbjct: 123 APDGTRLRNTAGALGPLIDTRAHGGYVLAPGSVI-NGHAYRVEGPALIRPL------PGW 175 Query: 169 DVEYLF 174 +E L Sbjct: 176 LLERLA 181 >gi|239981226|ref|ZP_04703750.1| hypothetical protein SalbJ_17449 [Streptomyces albus J1074] Length = 296 Score = 85.3 bits (209), Expect = 4e-14, Method: Composition-based stats. Identities = 28/186 (15%), Positives = 45/186 (24%), Gaps = 35/186 (18%) Query: 15 HNGFKLIPLRLGDKRPQRLG---------------KWEEQLLSSEKIDK--LP--ACGFG 55 G+ + PLR G KRP WE + + + G Sbjct: 13 ERGWPVFPLRPGGKRPALHPETRCPHAGACTNGHVTWERRATTDPDRIRAAWSTGDWNIG 72 Query: 56 FVCGVGEQPLYAFDID----SKDEKTANTFKDTFEILHGTPI---VRIGQKPKILIPFRM 108 G L D+D D G P+ + + Sbjct: 73 LATGPA--RLVVIDLDKPKDGTDAPDGAANLLALCEHAGQPVPTTRTVRTASGGTHLYFS 130 Query: 109 NKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEE 168 +G + + T + +D G Y +A Y P + Sbjct: 131 APDGTRLRNTAGALGPLIDTRAHGGYVLAPGSVI-NGHAYRVEGPALIRPL------PGW 183 Query: 169 DVEYLF 174 +E L Sbjct: 184 LLERLA 189 >gi|291283822|ref|YP_003500640.1| putative P-loop ATPase-like protein [Escherichia coli O55:H7 str. CB9615] gi|290763695|gb|ADD57656.1| Predicted P-loop ATPase-like protein [Escherichia coli O55:H7 str. CB9615] Length = 728 Score = 85.3 bits (209), Expect = 4e-14, Method: Composition-based stats. Identities = 84/626 (13%), Positives = 154/626 (24%), Gaps = 122/626 (19%) Query: 33 LGKWEEQLLSSEKIDKL---PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILH 89 + +W +++ + P G G A D DS+DE + T L Sbjct: 63 IAQWTGYVVTEHDFARWSNEPDYGICVRTG---HGWLALDCDSEDEDIQADIRKTLVQLL 119 Query: 90 G--TPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKE 147 G P K L ++ + K+ G +++L GQ FVA H + Sbjct: 120 GELPPRRWRANSNKCLYLLAVDGDFRKRIHRLAGDMGIIELLANGQQFVACGTH-SSGAR 178 Query: 148 YTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTN 207 W ++ P ++ E +E L++ E V + + + + Sbjct: 179 IEWDGGL----PDEPPAITGEQLETLWQRLAEQLPVSVTTEAGNTKMRDRSAFTPGATDD 234 Query: 208 -REITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSK----------GKE--IARRWS 254 E + NG +I H + G G E + Sbjct: 235 TAEYLDANGWTLLDGANGER--YIRCPFEDGHSSGGDPTSTAYFPAGTAGFEQGHFKCLH 292 Query: 255 KQGSTYDEENFNYKW----DTFD--FEEIGDTAKKRSTFTSLFYHHGKLIPKGLLAS--R 306 + D+ +F D F+ F + + + R Sbjct: 293 ASCAHRDDGDFLNAIGIRNDDFEDLTSTEVAEPLPLPAFERDKWGRIEATISNAAKAVVR 352 Query: 307 FSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDV 366 F ++ A + W +IT F +E + Sbjct: 353 PDFVDIDIRFDQFRDEIMFAPAGSGQWRAFTD-----ADYARLRITMEKRGFKPVGRELI 407 Query: 367 FDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSS 426 D+ D + +I + D Sbjct: 408 RDVVLLAAD-------------------------------EQPFDSAITWLNGLEWDGVP 436 Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYF 486 R + TP+ + Sbjct: 437 RIECF-----------------YHTHFGTADTPYTRAVSMYMWT---------------- 463 Query: 487 TRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEA 546 G L G KA + G G GKS+ + + + + + + E Sbjct: 464 -ALAGRVLEPGIKADMVPILVGPQGCGKSSGVEAL----------SPDPAFFTEISFVEK 512 Query: 547 GKANPSLIR-LMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFT 605 L R + G + I E + IK Y ++ P Sbjct: 513 DD---DLARKMRGRLVAEIGELRGLNTKELESIKAFVTRTHENWIPKYREFATQFPRRLV 569 Query: 606 PFIVPNKHLFVRNPDDAWWRRYIVIP 631 N+ F+ + RR++ + Sbjct: 570 FVGTTNEDEFLADKTG--NRRWLPVE 593 >gi|145354403|ref|XP_001421475.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144581712|gb|ABO99768.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 724 Score = 84.9 bits (208), Expect = 4e-14, Method: Composition-based stats. Identities = 95/764 (12%), Positives = 195/764 (25%), Gaps = 112/764 (14%) Query: 20 LIPLRLGDKRPQRLGKW-EEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTA 78 LIPL +K P + +E +P +G + G + D D K Sbjct: 3 LIPLD-QNKEPTCGRGFLDEANYEQNTQKVIPGEMYGVLTGRP-NRVLVIDWDCYGGKCE 60 Query: 79 NTFKDTF---EILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYF 135 + ++ + + F ++E K T +G +DI G Y Sbjct: 61 FELTEEMLTRKVGGEGAYIVKTRSGGYHTYFAWDEERFGDWKGTVGIEGFVDIRTTGNYV 120 Query: 136 V---AYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSII 192 V A Y + + P + + +L + Sbjct: 121 VGADAPG--------YELLRG----DINNLPPMPNDLYSFLDGKVGHKVERADTECS--- 165 Query: 193 PSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARR 252 +T +T L G + W+ + E + Sbjct: 166 ------------FTQASVTPLLEEMGFTGIH-----WLSGATSYDFECDQCRPQRGTTVG 208 Query: 253 WSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYN 312 + E N + F E+G +HG P+ Sbjct: 209 QCPCCGGFHEGNGRGGGNHFYVAEVGLGV-------LTVKNHGNCKPRQF---------- 251 Query: 313 KAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVS---MKEDVFDL 369 ++ G + K + + + + + L + + Sbjct: 252 -----RFEVGCLVTGITEKEQNEIKEGTSAGYIEVRREFEKHVAKILTKDLFCDDSCYGT 306 Query: 370 SEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFL 429 + + ++ + R+ + V K + + D LD + Sbjct: 307 TGDITKFSEAALVRRYRELSFVDENGVLRKGKKNGFIEKWLDDDNKRVY-DTLDVVPK-- 363 Query: 430 GEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE-SEEVMDYFTR 488 + +L G V+ + + + FL+L+ SE ++Y Sbjct: 364 NCSNKTYNLWRGYPVEG---------IPSELGKEGDVKPFLELLLVLCGGSENALEYALN 414 Query: 489 CVGMAL-LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAG 547 K + RGV G+GK T ++L+ G + + Sbjct: 415 WFACLFQRPEEKPITSLVFRGVQGTGKGTFLHLLHALMGK-------TFHETADPKKDIF 467 Query: 548 KANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPF 607 + ++I + + ++ +K M T + Y F Sbjct: 468 GTHANMIEGK-KCLALNEADECIMKMYRKLLKSMLTDTSFTINPKHVQLYVIMNLVGFLF 526 Query: 608 IVPNKHLFVRNPDDAWWRRYIVI-PFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + + D RR++V+ P + ++ + + + Sbjct: 527 FSNDDYPVFLEMSD---RRFVVMEPLLTHLNDQTGFLKEFRDVYIKDLRNLRAIYDHLM- 582 Query: 667 ISKGLDVDIPEVCLK--AKEEE----RQGTDTYQAWIDDCCDIG-ENLWE----ESHSLA 715 GLD+ + + R + W + C + W + + Sbjct: 583 ---GLDLSTFDYVKDRPTTDAYSEMKRGCMPKFTRWFEHCVTVEFPEKWVGNKIRNSDIF 639 Query: 716 KSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKE 759 Y + S V LK F K +I Sbjct: 640 IEYQTWLPAATRGQD---SATRVGNKLKD--FFKKEKGHRIPMR 678 >gi|312876298|ref|ZP_07736284.1| Bifunctional DNA primase/polymerase [Caldicellulosiruptor lactoaceticus 6A] gi|311796944|gb|EFR13287.1| Bifunctional DNA primase/polymerase [Caldicellulosiruptor lactoaceticus 6A] Length = 277 Score = 84.6 bits (207), Expect = 6e-14, Method: Composition-based stats. Identities = 20/155 (12%), Positives = 43/155 (27%), Gaps = 8/155 (5%) Query: 33 LGKWEEQLLSSEKIDKL----PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEIL 88 ++ K+ + G G + D+D + K + Sbjct: 50 PNGVKDATKDINKVKEWWTKKLWANIGVATGKIS-GFFVIDVDGEIGKEELRSLELEHSK 108 Query: 89 HGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEY 148 + ++ I F+ + + +DI G Y V K+ +Y Sbjct: 109 LPDTVEQLTGSGGKHILFKYPSDVV--IPNKVGFIPKVDIRSDGGYIVVAPSIHKSGNQY 166 Query: 149 TWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVP 183 W H F+V + ++ + + P Sbjct: 167 MWEALSHPFEV-EIAEPPNWLIDLIAEKPTGGKRP 200 >gi|256006071|ref|ZP_05431004.1| Bifunctional DNA primase/polymerase [Clostridium thermocellum DSM 2360] gi|255989961|gb|EEU00110.1| Bifunctional DNA primase/polymerase [Clostridium thermocellum DSM 2360] Length = 207 Score = 84.6 bits (207), Expect = 6e-14, Method: Composition-based stats. Identities = 27/169 (15%), Positives = 45/169 (26%), Gaps = 25/169 (14%) Query: 8 EQAKQAIHNGFKLIPL-----------------RLGDKRPQRLGKWEEQLLSSEKIDKL- 49 + A + +IPL K P G ++ E+I K Sbjct: 7 DAALKYAEANIPVIPLHWICEDGSCSCKEGSNCDSKGKHPLYTGWYKNSTAYVEQIRKWW 66 Query: 50 ---PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPF 106 P G G L D+D ++T + + T L T G+ + F Sbjct: 67 TKTPNANIGIPTGEKSDWLV-LDVDDGGDETISALEATHGKLPDTVTAVTGRGGR-HYVF 124 Query: 107 RMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPH 155 + + + LD V + +Y W Sbjct: 125 KYPQG--RSIPNKTKFAPDLDTRSTDGLIVVAPSIHVSGNQYQWLEGHS 171 >gi|302553095|ref|ZP_07305437.1| hypothetical protein SSQG_04324 [Streptomyces viridochromogenes DSM 40736] gi|302470713|gb|EFL33806.1| hypothetical protein SSQG_04324 [Streptomyces viridochromogenes DSM 40736] Length = 295 Score = 84.2 bits (206), Expect = 7e-14, Method: Composition-based stats. Identities = 30/212 (14%), Positives = 52/212 (24%), Gaps = 44/212 (20%) Query: 15 HNGFKLIPLRLGDKRPQ----------------RLGKWEEQLLSSEKID-KLP--ACGFG 55 G+ +IPL KRP + + E I G Sbjct: 10 ERGWPVIPLLPNAKRPAGHPERACPGTGRCASGHRKPEQRATTNPELIRATWATRPYNVG 69 Query: 56 FVCGVGEQPLYAFDIDSKDEK------TANTFKDTFEILHGTPI-----VRIGQKPKILI 104 G L D+D + T G + VR + + Sbjct: 70 IATGPA--GLLVIDLDVCKPEEPKGAPDGATSLKALCERTGHTVPATYRVRTARGGE--H 125 Query: 105 PFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPL 164 + G++ K + H+D G Y VA Y ++ P+ Sbjct: 126 LYFTAPAGMRLKNSANRLGPHIDTRAWGGYVVAPGSTTP-DGAYEVN--------DEAPV 176 Query: 165 LS-EEDVEYLFKFFQEITVPLVKDKKSIIPSK 195 + L + V + + + Sbjct: 177 APLPWWLAALLTEHPKPAVVELAPVRDGTRAA 208 >gi|152990211|ref|YP_001355933.1| hypothetical protein NIS_0462 [Nitratiruptor sp. SB155-2] gi|151422072|dbj|BAF69576.1| hypothetical protein [Nitratiruptor sp. SB155-2] Length = 718 Score = 84.2 bits (206), Expect = 7e-14, Method: Composition-based stats. Identities = 76/638 (11%), Positives = 168/638 (26%), Gaps = 109/638 (17%) Query: 19 KLIPLRLGDKRPQRLGK---WEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDE 75 IP + + W + + + + A G GFV P D+D + Sbjct: 26 TKIPYNPNNGKKASSTDPLAWGDIDEAQAGLVRYGANGLGFVL-TKSDPFVFIDLDHVLD 84 Query: 76 KTANTFKDT----FEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGC 131 + + + + + ++ + IK K T L++ Sbjct: 85 ENKRVKCEWARQLLKEIKSYTEISPSGDGLHVVVSGKLPDYIKHK-TKFDDGSALEVYES 143 Query: 132 GQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSI 191 G+Y ++ + E D+ L +F + + Sbjct: 144 GRYMTITGEVFD-GRD----------------DIKELDLSILGEFAEHKIETKNAPVQIE 186 Query: 192 IPSKTWTNNNNRQYTNREITAFLSCFGEEFYNG--SHDEWIPVVMAVHHE-----TRGSS 244 + + E L ++ + D+W + M+ + + Sbjct: 187 SATT----------LDDEAIIDLMKRKGQWPDAPKDGDDWSSLDMSFANRLAFWCGKDIE 236 Query: 245 KGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLA 304 + I R+ +D + ++ D P Sbjct: 237 RMDRIFRQSPLMRQKWDRPTAGSTYGRITLKKACDFVDSVYDPALRNESDCPFEPYNEEG 296 Query: 305 SRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKE 364 +D K +YK L T + W+ Sbjct: 297 GPRNDKEEKDPLWLYK---VLLTKGIEVWF------------------------------ 323 Query: 365 DVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDS 424 D+ E +N++ ++ + K+ A G+ + + Sbjct: 324 ---DIKLEKYGIKRNNRVDYIAKSSLQQIVFEIIGKTPKNIAVPTYIGAYEPSKPEKWEE 380 Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFE-SEEVM 483 GI + + + K + + +L+ F+ + M Sbjct: 381 E--------GIKYINLFKPTP------LMKVKPVKEMP----EIVKNLLLNLFDYDAKSM 422 Query: 484 DYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP 543 F + + G G+GK L++L+K F N +++ Sbjct: 423 GLFINWLAFIYQYKERTGVAWIFMGKQGTGKGLLVDLLKKIFEEHMSSNITDANLDSQF- 481 Query: 544 PEAGKANPSLIRLMGSRIVIISETN-ENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602 NP L + + +S N ++ + ++K + + E Sbjct: 482 ------NPYLYNKLIVHLNEVSADNRKSRMLVKNRLKTWITDETLYINRKNMKE-VEIKN 534 Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD 640 I N+ + V D RR+ VI + + ++ Sbjct: 535 FCNFIINSNETIPVDIEDSD--RRFNVIECNNVLKEQE 570 >gi|306833439|ref|ZP_07466566.1| prophage Lp4 protein 7 [Streptococcus bovis ATCC 700338] gi|304424209|gb|EFM27348.1| prophage Lp4 protein 7 [Streptococcus bovis ATCC 700338] Length = 574 Score = 84.2 bits (206), Expect = 8e-14, Method: Composition-based stats. Identities = 38/225 (16%), Positives = 71/225 (31%), Gaps = 13/225 (5%) Query: 8 EQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEK-IDKLP---ACGFGFVCGVGEQ 63 E A GF++ PL+ K Q + W+E+ + + I G G Sbjct: 6 ESALNYAREGFQVFPLQSNSKSKQIVKSWKEKATTDNEVIQNWFSNTDYNVGVRTG---N 62 Query: 64 PLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQ 123 DID+K E F + + + +R+++E Sbjct: 63 GFIVIDIDNKSEVNGYESIKLFLKDFPSTKIVKTPNNGWHMYYRVDRE----ISCRTGIV 118 Query: 124 GHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVP 183 +DI G G Y V + + P E E ++ + + E+ Sbjct: 119 KGVDIRGDGGYVVGIGSVVNGNRYFVSRDEPIAQANEAIYRFLE--MKSMNRKNLEVEEG 176 Query: 184 LVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDE 228 + + K++ + + +++ I L E N DE Sbjct: 177 IYQGKRNDYLFRMGCFLQQKGFSDEAIECCLKKENEWKCNPPLDE 221 >gi|283851766|ref|ZP_06369044.1| Bifunctional DNA primase/polymerase [Desulfovibrio sp. FW1012B] gi|283572886|gb|EFC20868.1| Bifunctional DNA primase/polymerase [Desulfovibrio sp. FW1012B] Length = 832 Score = 84.2 bits (206), Expect = 8e-14, Method: Composition-based stats. Identities = 34/255 (13%), Positives = 66/255 (25%), Gaps = 44/255 (17%) Query: 8 EQAKQAIHNGFKLIPL----------------RLGDKR----------PQRLGKWEEQLL 41 E A + +G + P DKR P+ G ++ Sbjct: 22 EHALKYAASGKSVFPCWERDETEAEYQARLSTMPEDKRAAAKRWEAKNPRVAGGFKAATT 81 Query: 42 SSEKI----DKLPACGFGFVCGVGEQPLYAFDIDSK----DEKTANTFKDTFEILHGTPI 93 KI + P G G + D+D + +T P Sbjct: 82 DESKILFWWQRWPDAAIGCPTGPAL-GAWVLDVDLPKIPGEPDGRDTLARLEADHGALPA 140 Query: 94 VRIGQKP--KILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWT 151 + F+ + +G + K T LD G G Y + Y WT Sbjct: 141 TVTQRTGSGGEQRFFKWSPDGPEIKNTGSKIGPKLDTRGAGGYVIMPPSLHPAGNRYAWT 200 Query: 152 TPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREIT 211 + + +E + + P ++ + S + + ++ + Sbjct: 201 SNGV-----ELAEAPAWLIELIL--VKPTPEPRMERQASTRTATGYGRAALEAEASKVAS 253 Query: 212 AFLSCFGEEFYNGSH 226 A ++ Sbjct: 254 APQGQRNGTLNAAAY 268 >gi|195546631|ref|YP_002117659.1| p101 [Rhizobium phage 16-3] gi|102642581|gb|ABF71362.1| p101 [Rhizobium phage 16-3] Length = 722 Score = 84.2 bits (206), Expect = 9e-14, Method: Composition-based stats. Identities = 29/249 (11%), Positives = 60/249 (24%), Gaps = 28/249 (11%) Query: 8 EQAKQAIHNGFKLIP----------------LRLGDKRPQRLGKWEEQLLSSEKI----- 46 + A+ I G + P + +K P + S+ + Sbjct: 19 DIARSYIAAGVPVFPCRERASEDIDQATGEYVDYAEKAPYNPNGLKGATTSARIVGIWFG 78 Query: 47 DKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIV--RIGQKPKILI 104 ++ P G G + D+D ++ + + E HG R Sbjct: 79 ERYPGALIGLPTGEPL-GAWVLDLDRHGDRDGHAWLAEMEAKHGALPETARASTANGGTH 137 Query: 105 PFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPL 164 F + GI+ + +D G G Y + Y W + Sbjct: 138 IFFKHVAGIRNRAAI---APGVDTRGDGGYVCGPGSQMADGRRYQWIDY-DGDGLPPIAD 193 Query: 165 LSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNG 224 ++ L E + P + + E+ + + Sbjct: 194 APAWLIDLLKPKVVEAAERRQPSTYTYQPEDSGAARYAAKSFEMELEKLRNSPSGQRGQQ 253 Query: 225 SHDEWIPVV 233 + Sbjct: 254 LFASACSIG 262 >gi|56479563|ref|YP_161152.1| hypothetical protein ebA7287 [Aromatoleum aromaticum EbN1] gi|56315606|emb|CAI10251.1| hypothetical protein ebA7287 [Aromatoleum aromaticum EbN1] Length = 833 Score = 84.2 bits (206), Expect = 9e-14, Method: Composition-based stats. Identities = 62/419 (14%), Positives = 126/419 (30%), Gaps = 33/419 (7%) Query: 379 NSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDL 438 + RF + + + + I + LD Sbjct: 401 DELLERFALIYGEKEAVFDRQERMIVPLAGMRNICISRELHRRWMEHPTKAIVR---LDN 457 Query: 439 ETGQKVKPTKELYITKSTGTPFVEGEPSQEFL-DLVSGYFESEE----VMDYFTRCVGMA 493 + +++ G P E L DL++ +EE V + + + Sbjct: 458 VGFDPTEKDRKITCNTYAGWPTKPKAGCCEMLIDLLAYLCSAEENADAVYQWLMKWLAYP 517 Query: 494 L-LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS 552 + G K Q + + G G+GKS I +G + +A+ I +R Sbjct: 518 IQRPGAKMQSAVVMHGPQGTGKSQFFKAISSIYGPYGLTINQAA-IENHRNTWLASRLFI 576 Query: 553 LIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612 L +++ NA +K++ G+ + + N Y E F + Sbjct: 577 LAE------EVVARQELYQVKNA--LKELVTGETVYVDPKFVNAYEEKNHVNIVFNSNEE 628 Query: 613 HLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLD 672 V DD RR++V+ D A K E + A + Sbjct: 629 MPIVLEDDD---RRHLVVRTPYAPQPEDFYRAVKREIEEGGIAALHA--HLLDLPLGDFT 683 Query: 673 V-DIPE--VCLKAKEEERQGTDT--YQAWIDDCCD-IGENLWEESHSLAKSYSEYREQEL 726 P A ++ + T Y+ ++ + I + + + +Y + Sbjct: 684 PHTKPPMTASKAALQDLALDSTTRFYREFVAGAIEGIKPGVVAIATDVFDAYRTWCN--- 740 Query: 727 NYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDNSNII 785 + K + L++K I ++ + + K G+ P + D + I+ Sbjct: 741 RINVKPAPMPRLINALEKKHRIECARKRYLGADGK-VMGPHGVCFIPEYREQPDRTRIL 798 >gi|163782228|ref|ZP_02177227.1| hypothetical protein HG1285_18884 [Hydrogenivirga sp. 128-5-R1-1] gi|159882760|gb|EDP76265.1| hypothetical protein HG1285_18884 [Hydrogenivirga sp. 128-5-R1-1] Length = 880 Score = 83.8 bits (205), Expect = 1e-13, Method: Composition-based stats. Identities = 39/234 (16%), Positives = 73/234 (31%), Gaps = 19/234 (8%) Query: 11 KQAIHNGFKLIPLRLGDKRPQ-RLGKWEEQLLSSEKIDKLPAC----GFGFVCGVGEQPL 65 K GF ++P G KRP ++ + S E +L VCG + Sbjct: 17 KAYYELGFCVLPAIKGKKRPSLNWREFISERPSLEDTLRLFEGKIDPNLCIVCGEVS-GV 75 Query: 66 YAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKI-LIPFRMNKEGIKKKKTTESTQG 124 DID ++ A + + I + K I F+ E I ++ E Sbjct: 76 VVLDIDGPEKFKAWLREKDKGLKSPLSIPSAIKTGKGFHIWFKHPSEDIGVRRFPEH--- 132 Query: 125 HLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDT-----PLLSEEDVEYLFKFFQE 179 ++ G G + + Y W +E L E ++L + +E Sbjct: 133 GFELRGTGGIVIVPPSLHPSGGIY-WPLHLEERSLEALLSWLKKLTLPELPDWLLEVAKE 191 Query: 180 ITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVV 233 ++ + + + Q T +++ L F+ H + Sbjct: 192 DEKRAIRYESDTPTLEGVELS---QETAQKLKTLLKEDLLPFWTEGHRHELACG 242 >gi|288918371|ref|ZP_06412724.1| Bifunctional DNA primase/polymerase [Frankia sp. EUN1f] gi|288350266|gb|EFC84490.1| Bifunctional DNA primase/polymerase [Frankia sp. EUN1f] Length = 794 Score = 83.8 bits (205), Expect = 1e-13, Method: Composition-based stats. Identities = 65/612 (10%), Positives = 149/612 (24%), Gaps = 99/612 (16%) Query: 25 LGDKRPQRLGKWEEQLLSSEKID----KLPACGFGFVCGVGEQPLYAFDIDSKDEKTANT 80 G K P+ ++E +I + P C +G V L D+D + A+ Sbjct: 54 PG-KHPRTASGFKEATADRVQIRTWVRQWPGCNWGGVTA----GLVVVDLDG--PRGADG 106 Query: 81 FKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNI 140 + + P + + +R N + + + +DI G Y V Sbjct: 107 WAALVDEHGEAPTLTHRTGRGRHLIYRQNGTKVSNSASKIADS--IDIRADGGYVVLPGS 164 Query: 141 HPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNN 200 + + Y + V + P Sbjct: 165 LHPSGRLYETEQAGAVVE------APRWLV------VSATAPRSTATSSTDGPRPGRLGE 212 Query: 201 NNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTY 260 + + +C + + + + G ++ + + Sbjct: 213 AIPYGAHDDTLFKYACLLRSRNIDKAEAYALIE---KRRLDCQNGGPSEVAGFTAEAARA 269 Query: 261 DEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYK 320 + WD + GD K S +L+ L F++ K Sbjct: 270 KVDEV---WDRYPAGRGGD-GDKPSGGRGPSQ-ATQLVNLALERYELGQTDEGEPFAVSK 324 Query: 321 KGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNS 380 G ++ + F+ S N+ + Sbjct: 325 GGDVRIA----------------------RMLRGAGGLRAELSALYFERSGSAPSNSGLA 362 Query: 381 KSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLET 440 + R + + + + T + I ++ + G + Sbjct: 363 DALVALEGFARRGE--KRSVAYRVTRDEADPARPVVIDLGEEETGRAVVVRPGGWEVVSN 420 Query: 441 GQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDY--FTRCVGMALLGGN 498 + +S T + LD + + D+ + +L+ Sbjct: 421 APVL-------FRRSALTKPLPTPERGGALDALRELL-NVSDRDWALLVAFLVASLIPEI 472 Query: 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMG 558 + G G+ K+ M + ++ G Sbjct: 473 PHPVLLI-TGEHGTAKTGAMVTLVSLIDPSAAPT----------RATPRDYEQWVVAASG 521 Query: 559 SRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRN 618 S ++ + + + + + + + GD M R Y + R+ Sbjct: 522 SWVIPLDNVSYIADWFSDAVCKASTGDAMVRRTLYAD---------------------RD 560 Query: 619 PDDAWWRRYIVI 630 +RR ++I Sbjct: 561 LTVDTFRRVVII 572 >gi|284030144|ref|YP_003380075.1| Bifunctional DNA primase/polymerase [Kribbella flavida DSM 17836] gi|283809437|gb|ADB31276.1| Bifunctional DNA primase/polymerase [Kribbella flavida DSM 17836] Length = 308 Score = 83.8 bits (205), Expect = 1e-13, Method: Composition-based stats. Identities = 36/262 (13%), Positives = 63/262 (24%), Gaps = 36/262 (13%) Query: 10 AKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSS----EKIDKLPACGFGFVCGVGEQPL 65 A G + PL G K P + WE + +I + G G L Sbjct: 25 AHWHADRGMAVFPLVPGRKTPA-VEDWEHAATTDHLSIAQIWRRAPYNIGVAAGR--SGL 81 Query: 66 YAFDIDSKDEK-------------------TANTFKDTFEILHGTPIVRIGQKPKILIPF 106 D+D A D + L T V + Sbjct: 82 VVVDLDRPKGAGDTAPEPWHSRGAASGGDVLALLAADAGQELPATYTVATASGGS--HLY 139 Query: 107 RMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLS 166 +GI+ T +D G G Y VA W + P Sbjct: 140 FRQPDGIRLGNTAGRLGWKIDTRGHGGYVVAAGSVTFAG----WYATTSLTAPQPLP--- 192 Query: 167 EEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSH 226 L + + T ++ + +T ++ + A + + Sbjct: 193 AWITGALTRSPDQPTAARTATQQL-KDASAYTLAAVSGELDKLLAATEGHRNDTLNRAAF 251 Query: 227 DEWIPVVMAVHHETRGSSKGKE 248 V + ++ + Sbjct: 252 ALGQLVGADLLDQSTARDELLS 273 >gi|42543571|pdb|1RO0|A Chain A, Bifunctional Dna PrimasePOLYMERASE DOMAIN OF ORF904 FROM The Archaeal Plasmid Prn1- Triple Mutant F50mL107ML110M Semet Remote gi|42543572|pdb|1RO2|A Chain A, Bifunctional Dna PrimasePOLYMERASE DOMAIN OF ORF904 FROM The Archaeal Plasmid Prn1- Triple Mutant F50mL107ML110M Manganese Soak Length = 216 Score = 83.8 bits (205), Expect = 1e-13, Method: Composition-based stats. Identities = 35/207 (16%), Positives = 69/207 (33%), Gaps = 26/207 (12%) Query: 8 EQAKQAIHNGFKLIPLRLGDKRP--QRLGKWEEQLLSSEKIDKLPA-----CGFGFVCGV 60 AK + +GF +IP+ K+P + K+ ++ S E+ + + G Sbjct: 6 RYAKWMLEHGFNIIPIDPESKKPVLKEWQKYSHEMPSDEEKQRFLKMIEEGYNYAIPGGQ 65 Query: 61 GEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIP--------FRMNKEG 112 + + D +SK++ A + E L + I I ++N Sbjct: 66 --KGMVIMDFESKEKLKAWIGESALEELCRKTLCTNTVHGGIHIYVLSNDIPPHKINPLF 123 Query: 113 IKKKKTTESTQGHLD-ILGCGQYFVAYNIH----PKTKKEYTWTTPPHRFKVEDTPLLSE 167 + K Q + +LG G + P ++ YT + + +S+ Sbjct: 124 EENGKGIIDLQSYNSYVLGLGSCVNHLHCTTDKCPWKEQNYTTCYTLY----NELKEISK 179 Query: 168 EDVEYLFKFFQEITVPLVKDKKSIIPS 194 D++ L +F E L Sbjct: 180 VDLKSLLRFLAEKGKRLGITLSKTAKE 206 >gi|167999191|ref|XP_001752301.1| predicted protein [Physcomitrella patens subsp. patens] gi|162696696|gb|EDQ83034.1| predicted protein [Physcomitrella patens subsp. patens] Length = 416 Score = 83.8 bits (205), Expect = 1e-13, Method: Composition-based stats. Identities = 46/379 (12%), Positives = 102/379 (26%), Gaps = 100/379 (26%) Query: 346 LTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKST 405 + +S + + + ++ + ++ ++ + + Sbjct: 125 EVKWALKSSKASMMKEILTGMYKFIADVCES-----YTETIKPATKIIDFIQSSDNRRKM 179 Query: 406 AQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP 465 + +LLDS +G + G+ + + + + YIT ST PFV + Sbjct: 180 MYTCAGMLYKEGFEELLDSRKDVIGMKGGMYNFIEDRFRRMEPDDYITLSTRIPFVPLDC 239 Query: 466 SQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF 525 + K+T N + Sbjct: 240 ----------------------------------------------NSKAT--NEVLDLL 251 Query: 526 GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGD 585 S +M+ R ++ A P L L I + E +E D++N +K++TG D Sbjct: 252 -----AKMPTSLVMRKR-VQSLAATPELAMLKERLIAFVQELDEGDKLNLGVMKELTGND 305 Query: 586 CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQ 645 + + L + D I F I Sbjct: 306 SLYIE------------------SSHDPLTMHLKD---------INFSNKIP-------- 330 Query: 646 KLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE 705 ++ ++ K Y++ ++ P E D + ++ + Sbjct: 331 ----LLAPVFMRFVIEEYKQYLT--YRLEEPNEVKDCTEIICVSNDIFGQFLSANVEKNG 384 Query: 706 NLWEESHSLAKSYSEYREQ 724 L +Y + + Sbjct: 385 KSIVAIKELYDTYKYWSKD 403 >gi|124378226|ref|YP_001029423.1| GfV-C20-ORF1 [Glypta fumiferanae ichnovirus] gi|124270633|dbj|BAF45559.1| GfV-C20-ORF1 [Glypta fumiferanae ichnovirus] Length = 972 Score = 83.8 bits (205), Expect = 1e-13, Method: Composition-based stats. Identities = 64/484 (13%), Positives = 131/484 (27%), Gaps = 62/484 (12%) Query: 273 DFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDA-----YNKAMFSIYKKGHFL-- 325 + + T + +L KL+ D +N + L Sbjct: 444 NHKRGRKTCDLQRIHKALRKETMKLLSIKSGKIFAKDDNCIVYFNNKNSDATRDDIKLVQ 503 Query: 326 ----YTADTKAWYKKDKNNVYIWS--LTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKN 379 + K Y N + + +I K+ F L + + Sbjct: 504 ALYAAKPNIKTRYCYSGNTISCCDPKTNVWEIIGE--------KKFDFHLRTYLTEIAE- 554 Query: 380 SKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLE 439 T +++ + + + G + ++ L+S + +D Sbjct: 555 ------IKLTKAELKHMNTKNAIANIRNIILGGVEITNFANRLNSKLHLFITDNKTIDTS 608 Query: 440 --TGQKVKPTKELYITKSTGTPFVEG---EPSQEFLDLVSGYFESEEVMDYFTRCVGMAL 494 E + G + + + + F + D+F + L Sbjct: 609 SIPPIIRHIEIEDLAKTTCGWSYNSELAAKYKEPVQSYFNTLFPEQSERDWFLSFIARFL 668 Query: 495 LGGNKAQRFIHIRG--VGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS 552 G + F+ + G +GK TL L+K FG+ Y+ N+ R Sbjct: 669 NGRRMDEPFLILTDEHEGKTGKKTLAKLLKAVFGSYYLSNSTIVRAGGTRENNEFAG--G 726 Query: 553 LIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARL---NYGNTYSESPASFTPFIV 609 L R+++ + D +N IK +TG DC + T E ++ Sbjct: 727 LYGFNEKRLLLADGLQKTDTLNCGFIKAITG-DCNYYMKHINKFFRTQFEFVVQAGLVVI 785 Query: 610 PN--KHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAK----------- 656 N D+ + ++ +V P ++ + Sbjct: 786 ANEKNMPKFDKTDENFLKKMVVCPLRSRFVTQEEFQEMRRSKNKMTNILIANDSSKLPFH 845 Query: 657 KW--FLKGVKAYISKGLDVDIPEVCLKAKEE----ERQGTDTYQAWIDDCCDIGENLWEE 710 +W + IP+ K+ TD + C EN + Sbjct: 846 EWRSATLDLLTEYYNKPISTIPDSMKAWKKRVCDMFFDYTDWMN--LHLCKSQNENEFVS 903 Query: 711 SHSL 714 + + Sbjct: 904 ATEI 907 >gi|227487379|ref|ZP_03917695.1| bifunctional DNA primase/polymerase [Corynebacterium glucuronolyticum ATCC 51867] gi|227092603|gb|EEI27915.1| bifunctional DNA primase/polymerase [Corynebacterium glucuronolyticum ATCC 51867] Length = 300 Score = 83.4 bits (204), Expect = 1e-13, Method: Composition-based stats. Identities = 33/234 (14%), Positives = 68/234 (29%), Gaps = 19/234 (8%) Query: 13 AIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEK----IDKLPACGFGFVCGVGEQPLYAF 68 G +++PL KRP+ G +E+ K P G + Sbjct: 56 YTEWGLEVLPLD--GKRPRIHGGVNAATTDTEQVAEWWSKWPYANIGIRV---PEGCLVV 110 Query: 69 DIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDI 128 D+D ++ A+ + + + F + +G +T +D+ Sbjct: 111 DVDPRNGGLADYRRMFPHGSCPHTGRTFTGSGGLHLYFTLPYDG----ETRGKYGTGIDL 166 Query: 129 LGCGQYFVAYNI-HPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKD 187 G G++ VA HP T + Y W P + PL S ++ + + Sbjct: 167 QGRGKFLVAPPSIHPTTGRAYAWW--PFVPPEKWAPLPSWCYLD--VYKPPRVAPREPLE 222 Query: 188 KKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGS-HDEWIPVVMAVHHET 240 + E + H++ + + + + Sbjct: 223 IRRYKAQHAKNPGAGLIRAVAEAQQGERNSLLYWAARCAHEDGLQIDAELTNAA 276 >gi|315121956|ref|YP_004062445.1| P4 family phage/plasmid primase [Candidatus Liberibacter solanacearum CLso-ZC1] gi|315122924|ref|YP_004063413.1| P4 family phage/plasmid primase [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495358|gb|ADR51957.1| P4 family phage/plasmid primase [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313496326|gb|ADR52925.1| P4 family phage/plasmid primase [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 68 Score = 83.4 bits (204), Expect = 1e-13, Method: Composition-based stats. Identities = 55/67 (82%), Positives = 59/67 (88%) Query: 1 MPVMQWKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGV 60 M VMQWK QAKQAI NGFK+IPLR GDKRP R GKWEEQLLS+E IDKLP+CGFG VCGV Sbjct: 1 MSVMQWKPQAKQAIKNGFKIIPLRHGDKRPLRAGKWEEQLLSNEDIDKLPSCGFGLVCGV 60 Query: 61 GEQPLYA 67 GEQP+YA Sbjct: 61 GEQPIYA 67 >gi|332983388|ref|YP_004464829.1| bifunctional DNA primase/polymerase [Mahella australiensis 50-1 BON] gi|332701066|gb|AEE98007.1| Bifunctional DNA primase/polymerase [Mahella australiensis 50-1 BON] Length = 271 Score = 83.4 bits (204), Expect = 1e-13, Method: Composition-based stats. Identities = 28/187 (14%), Positives = 52/187 (27%), Gaps = 33/187 (17%) Query: 9 QAKQAIHNGFKLIPLR----------------LGDKRPQRLGKWEEQLLS----SEKIDK 48 AK+ G+ +IPL G K P + + +K Sbjct: 11 YAKRL---GWMIIPLNNIEDGRCSCGNPHCQSPG-KHPLTQHGMKNATADILVIARWWEK 66 Query: 49 LPACGFGFVCGVGEQPLYAFDIDSKDEKTAN--TFKDTFEILHGTPIVRIGQKPKILIPF 106 P G +C ++ D+D++ + + L T + G F Sbjct: 67 WPNANIGLIC--RANGIFVLDVDARHGGIDSLYQLIAEYGELPYTVVCNSG-GGGAHFYF 123 Query: 107 RMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLS 166 + + + + LDI G Y + + K Y W F Sbjct: 124 KYPVNIV--ITDKQGFKSGLDIRSNG-YILLPPSDHISGKSYMWRKSCTPFSTP-IAEAP 179 Query: 167 EEDVEYL 173 + + + Sbjct: 180 QWLLNMI 186 >gi|332160965|ref|YP_004297542.1| Replication protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|325665195|gb|ADZ41839.1| Replication protein [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|330862121|emb|CBX72285.1| hypothetical protein YEW_AK02220 [Yersinia enterocolitica W22703] Length = 721 Score = 83.0 bits (203), Expect = 2e-13, Method: Composition-based stats. Identities = 50/366 (13%), Positives = 97/366 (26%), Gaps = 36/366 (9%) Query: 35 KWEEQLLSSEKIDKL---PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHG- 90 W ++ ++ +I+K P G C + A D DS+ E+ ++ L G Sbjct: 66 NWTKRQINDSEIEKWSREPDYGI---CMRTGNGVIALDCDSESEEIQAIIQELTLELFGV 122 Query: 91 -TPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYT 149 P K L + E K+ E G +++L G V HP + Sbjct: 123 IPPRRYRSNSNKCLYLLAVEGEYRKRIHRLEGNNGIIEMLADGNQAVVAGTHP-SGARIL 181 Query: 150 WTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTN-R 208 W ++ +++ E +E L+ E + + + + Sbjct: 182 WDNGL----PDEPVVITPEQLESLWSALAERLPVVNSTEAGTSRLRDRSQATPNATDETA 237 Query: 209 EITAFLSCFGEEFYNGSHDEWIPVVMAVHHETR------------GSSKGKEIARRWSKQ 256 + + +G P T G G S Sbjct: 238 DFLDANGWTLDFGASGERYIRCPFEDGHSGATDPTSTVYFPAGTAGFELGHFKCLHASCG 297 Query: 257 GSTYDE--ENFNYKWDTFDFEEIGDTAKKR-STFTSLFYHHGKLIPKGLLAS--RFSDAY 311 + + D FD E+ + +F + + + R Sbjct: 298 HRNDGDYLNKLGLRIDDFDIVEVEASEPAPLPSFKRDNKGRIEATIENTAKAVMRPDFCS 357 Query: 312 NKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSE 371 + F ++ W + +IT F +E + D+ Sbjct: 358 IQIRFDQFRDEIMFAPDKGDQWQAFGDP-----DYSRLRITMEKRGFKPIGRELIRDVVL 412 Query: 372 EPEDNN 377 D Sbjct: 413 LAADEQ 418 >gi|170751546|ref|YP_001757806.1| bifunctional DNA primase/polymerase [Methylobacterium radiotolerans JCM 2831] gi|170658068|gb|ACB27123.1| Bifunctional DNA primase/polymerase [Methylobacterium radiotolerans JCM 2831] Length = 289 Score = 82.6 bits (202), Expect = 2e-13, Method: Composition-based stats. Identities = 26/143 (18%), Positives = 40/143 (27%), Gaps = 12/143 (8%) Query: 50 PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRI---GQKPKILIPF 106 P G G D+D + + + E HG I F Sbjct: 75 PQANIGMATGT----TVVLDVDPRHG--GDASLEALEAEHGPLPETTRALTGGGGQHILF 128 Query: 107 RMNK--EGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPL 164 R E LDI G G Y VA + + + Y W+ H V Sbjct: 129 RAPADVEIRNSAGDQGGLAPGLDIRGAGGYIVAPSSRHASGRYYAWSVDHHPDDVP-PAE 187 Query: 165 LSEEDVEYLFKFFQEITVPLVKD 187 + + V+ L + + + Sbjct: 188 MPDWLVQALSRTGEGAAARDPSE 210 >gi|257052763|ref|YP_003130596.1| hypothetical protein Huta_1690 [Halorhabdus utahensis DSM 12940] gi|256691526|gb|ACV11863.1| conserved hypothetical protein [Halorhabdus utahensis DSM 12940] Length = 370 Score = 82.6 bits (202), Expect = 2e-13, Method: Composition-based stats. Identities = 42/297 (14%), Positives = 79/297 (26%), Gaps = 39/297 (13%) Query: 2 PVMQWKEQAKQAIHNGFKLIPLRLGD---KRPQRLGKWEEQLLSSEKIDKLPACGFGFVC 58 QW ++ +P+ G W + + +ID+ G GFV Sbjct: 20 DRDQWICWREETRDGKATKVPIEPGSDEFASTTDAETWTDFETARREIDREDIDGVGFVF 79 Query: 59 GVGEQPLYAFDID---SKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKK 115 P D+D K T +D + L V +I + Sbjct: 80 -SEAGPFVGVDLDDCRDPGGKLDETARDIVQRLDSYTEVSPSGTGVHVIV-------KGE 131 Query: 116 KKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFK 175 + + +++ ++F T + + + E V Sbjct: 132 LPDGRNRRRSVELYDTARFFTVTGERIDE------TPTRVAHRQDALAAVHREYVREEDS 185 Query: 176 FFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNG---SHDEWIPV 232 P S + ++ + + +A S ++ +NG ++ Sbjct: 186 NSNGANAPGSVSPSQRRSSGSEAQLDDAEVLEKARSAENSGKFDDLWNGRKAGYESHSEA 245 Query: 233 VMAV---------------HHETRGSSKGKEIARRWS-KQGSTYDEENFNYKWDTFD 273 MA+ R S +E GSTY E+ T D Sbjct: 246 DMALCCLLAFWTGGDRSQIDRLFRQSGLMREKWDAVHYADGSTYGEKTIERAIGTVD 302 >gi|309780874|ref|ZP_07675614.1| regulatory prophage protein [Ralstonia sp. 5_7_47FAA] gi|308920340|gb|EFP65997.1| regulatory prophage protein [Ralstonia sp. 5_7_47FAA] Length = 670 Score = 82.6 bits (202), Expect = 3e-13, Method: Composition-based stats. Identities = 36/215 (16%), Positives = 57/215 (26%), Gaps = 27/215 (12%) Query: 8 EQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKI-DKL---PACGFGFVCGVGEQ 63 + AK + G ++P+ K P + L + E+I D PA G G Sbjct: 32 QAAKFYVRCGHPVVPVHPYAKNPYIKDWEQHPLRTVEEIQDHWSAHPADNVGLFMG---D 88 Query: 64 PLYAFDIDSKDEKTANTFKDTFEILHGTPIVRI-----GQKPKILIPFRMNKE------- 111 A DID+KD K P +R Q FR+ Sbjct: 89 EYVALDIDTKDGKEGARTLAWLA--AKYPPIRSTLTQRSQSGGWHKIFRLTPAQRCRLRK 146 Query: 112 GIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVE 171 + LDI+ V Y W + + ++ E Sbjct: 147 HTNVRLGPCHANSGLDIITGNAIIVVAPSTTHVG-AYKWKDL-----DAEILDMPDDLFE 200 Query: 172 YLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYT 206 L P ++ +K + Sbjct: 201 LLVSVEHAGREPANDPAPQLLGAKPPVVELDDHII 235 >gi|302536929|ref|ZP_07289271.1| predicted protein [Streptomyces sp. C] gi|302445824|gb|EFL17640.1| predicted protein [Streptomyces sp. C] Length = 336 Score = 82.2 bits (201), Expect = 3e-13, Method: Composition-based stats. Identities = 36/249 (14%), Positives = 58/249 (23%), Gaps = 48/249 (19%) Query: 15 HNGFKLIPLRLGDKRPQ----------------RLGKWEEQLLSSEKIDK-LP--ACGFG 55 G+ + PLR GDKRP + L +E+I G Sbjct: 46 ERGWPVFPLRPGDKRPAGHPERNCPRTGRCTDGHRTPEQRATLDTEQITACWQTAPYNVG 105 Query: 56 FVCGVGEQPLYAFDIDSKDEKTANTFKDTFE----------------ILHGTPIVRIGQK 99 G L D+D E D T + + Sbjct: 106 LATGPA--GLLVVDLDIPKEDDGPAPADWAGATDGLDVFAMICERAGERLPTETFTVRTR 163 Query: 100 PKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKV 159 + + + + +D G Y VA T + Sbjct: 164 RGGQHLYFTAPAEKRLRGSAGRLGWKVDTRAWGGYVVAAGSTVGTGSY---------EII 214 Query: 160 EDTP--LLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCF 217 D P L + L VP+ + I + + + A Sbjct: 215 HDAPPAALPTWLGDLLITPPAPAPVPVAVLRSRIGKADRYATAALNGEVAKVAAAATGAQ 274 Query: 218 GEEFYNGSH 226 YN ++ Sbjct: 275 NTTLYNAAY 283 >gi|46198964|ref|YP_004631.1| hypothetical protein TTC0656 [Thermus thermophilus HB27] gi|46196588|gb|AAS81004.1| hypothetical conserved protein [Thermus thermophilus HB27] Length = 293 Score = 81.9 bits (200), Expect = 4e-13, Method: Composition-based stats. Identities = 34/152 (22%), Positives = 51/152 (33%), Gaps = 16/152 (10%) Query: 8 EQAKQAIHNGFKLIPLRLGDKRPQRL------GKWEEQLLSSEK-IDKLPACGFGFVCGV 60 E A G+ ++PLR G K P + E P CG G + G Sbjct: 5 EHALSYAAQGYGVLPLRPGGKEPLGKLVPHGLKNASRDPATLEAWWRSCPRCGVGILPGP 64 Query: 61 GEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120 + D D D + + L P R + + F EG++ + Sbjct: 65 ---EVLVLDFD--DPEAWEGLRQEHPALEAAPRQRTPKGGR--HVFLRLPEGVRLSASV- 116 Query: 121 STQGHLDILGCGQ-YFVAYNIHPKTKKEYTWT 151 +D+ G G+ Y VA K + YTW Sbjct: 117 RAIPGVDLRGMGRAYVVAAPTRLKDGRTYTWE 148 >gi|320450734|ref|YP_004202830.1| bifunctional DNA primase/polymerase, N- family [Thermus scotoductus SA-01] gi|320150903|gb|ADW22281.1| bifunctional DNA primase/polymerase, N- family [Thermus scotoductus SA-01] Length = 300 Score = 81.9 bits (200), Expect = 4e-13, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 60/165 (36%), Gaps = 18/165 (10%) Query: 11 KQAIHNGFKLIPLRLGDKRP---QRLGKWEEQLLSSEKIDKL----PACGFGFVCGVGEQ 63 ++ + G+ ++PL G+KRP +E ++ P G G + + Sbjct: 16 QRYVRLGYAVLPLVPGEKRPHFRLVPHGLKEASQDPATLEAWWRSCPEAGVGIL---APE 72 Query: 64 PLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQ 123 + D+D + + F L P + + + F EG+K + Sbjct: 73 GVLVLDVD--QGEAWEALRRDFPALEAAPRQKTPKGG--VHLFLRLPEGVKLSASV-RAI 127 Query: 124 GHLDILGCGQ-YFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSE 167 +D+ G G+ Y VA K + Y W P + E P + + Sbjct: 128 PGVDLRGMGRAYVVAAPTRLKDGRTYAWEVPL--VRPEALPPVPD 170 >gi|254516156|ref|ZP_05128216.1| putative integrase [gamma proteobacterium NOR5-3] gi|219675878|gb|EED32244.1| putative integrase [gamma proteobacterium NOR5-3] Length = 489 Score = 81.9 bits (200), Expect = 4e-13, Method: Composition-based stats. Identities = 58/447 (12%), Positives = 121/447 (27%), Gaps = 49/447 (10%) Query: 350 KITASIMNFLVSMKEDVFDLSEEPEDNNKNS--KSPRFWFNTDYRRQNVEENSKAKSTAQ 407 K L + V +L+++ N S + + +T + + Sbjct: 50 KNVDLDPARLSDPDQCVAELNKQYAVVNSGSRVEIADEFNDTHPFLTVDAFHDLFANVMV 109 Query: 408 SLEAGSIFSITSDLL---DSSSRFLGEQDGILDLETGQKVKPTKELYITKS-TGTPFVEG 463 ++ + +T D G Q V + Y G Sbjct: 110 LVDGKRLKPVTKYWFTHPDRRQYLAGTQ-------FAPGVPASPNYYNLWKDFGVQADPL 162 Query: 464 EPSQEFLDLVSGYF--ESEEVMDYFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLMNL 520 FL+ V +++ +Y + +A+ G I + G+GK + Sbjct: 163 GSCPLFLNHVESVVCDGNQDCYEYLLNWLALAVQNPGVLPGVAICLLSGQGTGKGLFASY 222 Query: 521 IKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN-ENDEINAAKIK 579 FGN + + + L + ++ E + ++ +K Sbjct: 223 AGKLFGNHFKHITDRGQLFGRFTD----------HLDDALLMFADEMHWSGNKEETGLLK 272 Query: 580 QMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNP-DDAWWRRYIVIPFDKPIAN 638 + + ++ YG I N+ V DD RR+ V+ Sbjct: 273 VLITEETRSSERKYG-ATMPVKNCVHLIIASNEGWVVPAELDD---RRFFVLEVASKRVG 328 Query: 639 RDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID 698 D + +L + + L + + ++ + W+ Sbjct: 329 -DYGYFDQLSAEMDSGGPEALLHKLLTRDISTFNPKDFPRTQARVSQQLASLANIERWLY 387 Query: 699 D-----CCDIGENL-------WEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746 D + L L +Y +R + S T L + G Sbjct: 388 DLADSTQLSLDTGLIDAPWPAKLPKDQLYAAYCRWRSESRIAG-PVESKAVFTQTLTKFG 446 Query: 747 FIGGIKREKIEKEWKSKRI---IKGLK 770 F G +K + ++GL+ Sbjct: 447 FTTGKATCPGKKNRVQAYVLPSVEGLR 473 >gi|302545972|ref|ZP_07298314.1| N- superfamily bifunctional DNA primase/polymerase [Streptomyces hygroscopicus ATCC 53653] gi|302463590|gb|EFL26683.1| N- superfamily bifunctional DNA primase/polymerase [Streptomyces himastatinicus ATCC 53653] Length = 301 Score = 81.9 bits (200), Expect = 4e-13, Method: Composition-based stats. Identities = 38/234 (16%), Positives = 56/234 (23%), Gaps = 45/234 (19%) Query: 4 MQWKEQAKQAIHN-------GFKLIPLRLGDKRPQRLG---------------KWEEQLL 41 M + E ++ G+ + PLR K P G KWEE+ Sbjct: 1 MPYDEYGNPFRNSAFNAAGRGWHVFPLRPDSKTPALHGADRCPRKGDCASGHRKWEERAT 60 Query: 42 S-SEKIDKLPA---CGFGFVCGVGEQPLYAFDIDSKDEKTANTFK------DTFEILHGT 91 E+I + G L D+D + ++ G Sbjct: 61 DKPEQIAAWWSRHWYNVAVATGP--SGLVVIDLDVPKDNSSADTPFGVETFKALCERAGQ 118 Query: 92 PI---VRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEY 148 P+ R+ + G++ T +D G Y VA Y Sbjct: 119 PVPATYRVRTASSGWHLYFTAPPGVQLANTAGKLGPLIDTRAWGGYVVAAGSAI-NGGVY 177 Query: 149 TWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNN 202 V PL E L Q V T Sbjct: 178 ------ADSGVHVAPL-PEWLCARLTARPQPQGHVAVPSSSRASRYATVALKAE 224 >gi|78214079|ref|YP_382858.1| ATPase-like [Synechococcus sp. CC9605] gi|78198538|gb|ABB36303.1| ATPase-like [Synechococcus sp. CC9605] Length = 355 Score = 81.5 bits (199), Expect = 5e-13, Method: Composition-based stats. Identities = 29/226 (12%), Positives = 77/226 (34%), Gaps = 24/226 (10%) Query: 553 LIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612 ++ L G + I + + + + + + + N ++ + + N Sbjct: 26 MLGLHGKKAAI-DYDSSGVVNDPGQFNSIVSNEPVQVWRKFSNKT-DARLGVVIWRLFND 83 Query: 613 HLFVRNPD--DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISK- 669 V + + RR I + + +D + +KL + +W + I K Sbjct: 84 LPGVSDSGGVEGMQRRIITFSIGQSVRRKDPNLKEKLC-EELPGILQWAWSLSRDEIRKA 142 Query: 670 ----GLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENL--WEESHSLAKSYSEYRE 723 G I E ++A+ + + ++ ++ + + L + Y ++ Sbjct: 143 FDAAGRIASISEASIEAQ---LNASPWLK-FL---IEVYPDGIQDIAAKKLFERYQQWCA 195 Query: 724 QELNYDRKRISTRTVTLNLKQKGFIGGIKREK---IEKEWKSKRII 766 E R ++ L LK+ G++ + +++E K+ Sbjct: 196 DEGR--RAVLNNTNFGLKLKKLTAPKGVEGSRLPIVKRETKTANRY 239 >gi|86750422|ref|YP_486918.1| hypothetical protein RPB_3311 [Rhodopseudomonas palustris HaA2] gi|86573450|gb|ABD08007.1| hypothetical protein RPB_3311 [Rhodopseudomonas palustris HaA2] Length = 1082 Score = 81.5 bits (199), Expect = 5e-13, Method: Composition-based stats. Identities = 49/258 (18%), Positives = 83/258 (32%), Gaps = 47/258 (18%) Query: 7 KEQAKQAIHNGFKLIPLRLGD--------KRPQRL-------------GKWEEQLLSSEK 45 ++ + I NG +P+ K P R+ KWE + Sbjct: 5 RDVFDRLIANGCSPLPIGPRSADPRGPQGKSPARIRSNARGEPIWFHFKKWETFC--DRQ 62 Query: 46 IDKL--------PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIG 97 + P CG G CG L A DID D + +L + + G Sbjct: 63 PHRFAFTAELRDPECGIGIACGF--NNLVAVDIDRDD-----LIEPLLAVLPPMVVAKRG 115 Query: 98 QKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYN-IHPKTKKEYTWTT--PP 154 + K L F E K + G LD + G V IHP T + Y WTT Sbjct: 116 R--KGLTVFYRGAEHWPKA----NYTGFLDFIARGAQTVLPPTIHPDTGQPYAWTTERTL 169 Query: 155 HRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFL 214 VE+ PLL+ + + + +D+++ ++ + ++ + Sbjct: 170 LDTPVEELPLLTADHRKAMEAVLAAHGWQPKEDRQARTAVTAARSSAHSAVSDYFALSDA 229 Query: 215 SCFGEEFYNGSHDEWIPV 232 G+ + + Sbjct: 230 VNSAALANIGAWAPALNL 247 >gi|326381302|ref|ZP_08202996.1| pancreatic ribonuclease [Gordonia neofelifaecis NRRL B-59395] gi|326199549|gb|EGD56729.1| pancreatic ribonuclease [Gordonia neofelifaecis NRRL B-59395] Length = 362 Score = 81.5 bits (199), Expect = 6e-13, Method: Composition-based stats. Identities = 50/292 (17%), Positives = 85/292 (29%), Gaps = 42/292 (14%) Query: 9 QAKQAIHNGF-KLIPLRLGDKRPQRLG------KWEEQLLSSEKIDKLP-ACGFGFVCGV 60 +A+ G+ + PL K P G W + + P C +G Sbjct: 59 EAEAYAARGWLDVFPLPAARKAPPPTGLTGRRAPWTD---TERAALVFPSGCNYGMRT-- 113 Query: 61 GEQPLYAFDIDSKDEKTANTFKDTFE----ILHGTPIVRIGQK--PKILIPFRMNKEGIK 114 L A D+D D KT E L T V P +R+ Sbjct: 114 -PAGLLAIDVDHYDGKTGAVTLADLEAKLGPLPSTWRVTSHGAANPSGQRWYRVPAVAEY 172 Query: 115 KKKTTESTQGHLD-ILGCGQYFVAYNIHPKTKKEYTWTTPPHRFK-----VEDTPLLSEE 168 + + ++ I +Y V Y W +P V P L + Sbjct: 173 ESAAGKD----IEVIHRNHRYSVLPPSVHPKGGRYAWISPDGAITEDVPLVTRIPELPAK 228 Query: 169 DVEYLFKFFQEI--TVPLVKDKKSIIPS---KTWTNNNN-RQYTNREITAFLSCFGEEFY 222 V+YL + + P + + + W ++ N + AF+S F Sbjct: 229 WVDYLTSTRPPVPGSTPAGIVRATAELDRMHRDWLSDTPIDGTVNAKTKAFISYIPGAFD 288 Query: 223 NGS--HDEWIPVVMAVHH----ETRGSSKGKEIARRWSKQGSTYDEENFNYK 268 G+ +D + + E G+ + + TY E + Sbjct: 289 RGTSRYDTMVRLFWEAAKRNAEEFDGARVHQGMVAALEAIAQTYRERVGEDR 340 >gi|328882523|emb|CCA55762.1| hypothetical protein SVEN_2476 [Streptomyces venezuelae ATCC 10712] Length = 321 Score = 81.5 bits (199), Expect = 6e-13, Method: Composition-based stats. Identities = 35/221 (15%), Positives = 55/221 (24%), Gaps = 37/221 (16%) Query: 9 QAKQAIHNGFKLIPLRLGDKRPQRL---------------GKWEEQLLSSEKI--DKL-- 49 A A G+ + PLR DKRP E++ + + Sbjct: 27 HAVAAAERGWHVFPLRPHDKRPAGHSTARCPATGRCTAGHKTPEQRATTDVDLLAAAWTH 86 Query: 50 PACGFGFVCGVGEQPLYAFDIDS---KDEKTANTFKDTFEILHGTPIVRIGQKPK----- 101 G G L D+D+ DE+ TFE L + + Sbjct: 87 APYNIGIATGP--SGLLVVDLDTLKPTDEEGTPDGVTTFEALCERAGQAVPLTHRVRTAR 144 Query: 102 -ILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVE 160 + G + T H+D G G Y VA Y + Sbjct: 145 GGQHLYFTQPTGHRLGNTAGRLGKHIDTRGWGGYVVAPGS-TTADGAYEVLDSRPPAPL- 202 Query: 161 DTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNN 201 ++ L Q V + + + Sbjct: 203 -----PPWILDALTARPQPAQTATVPPAPLTVRASRYAAAA 238 >gi|85716250|ref|ZP_01047224.1| Hypothetical Membrane Spanning Protein [Nitrobacter sp. Nb-311A] gi|85696922|gb|EAQ34806.1| Hypothetical Membrane Spanning Protein [Nitrobacter sp. Nb-311A] Length = 853 Score = 81.1 bits (198), Expect = 6e-13, Method: Composition-based stats. Identities = 40/274 (14%), Positives = 73/274 (26%), Gaps = 36/274 (13%) Query: 15 HNGFKLIPLRLGDKRPQ--RLGKW--EEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDI 70 GF++ P+ DK+P +W + + P G + L D+ Sbjct: 52 QRGFRVFPVIQNDKKPYIKEWPEWATHDAPRIQAVWGRYPILNIGCF----NEDLILIDV 107 Query: 71 DSKDEKTANTFKDTFEIL-HGTPIVRIGQ--KPKILIPFRMNKEGIKKKKTTESTQ---G 124 D+K K E L G P+ + +R + + KT + Sbjct: 108 DTKAGKHGAKSLALLEALYEGLPLTYTQRSASGGYHFTYRAPPQIVVTIKTCSNKIVGFP 167 Query: 125 HLDIL-GCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVP 183 +DI G Y V EYT + ++ L K Sbjct: 168 DIDIRAGRTGYIVGAGSSTAVG-EYTVEKDLP------IADAPQWLIDLLPKV------- 213 Query: 184 LVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHET--- 240 + S+T + + +L E G+ + +A H + Sbjct: 214 HDRRATRNGDSQTPLVELDTESAIARAADWLENNAPEAVQGAGGDAETYKVACHVKGFGI 273 Query: 241 ---RGSSKGKEIARRWSKQGSTYDEENFNYKWDT 271 + + K + + K Sbjct: 274 SPEKCLELMLDHWNDI-KASPPWKPDELEEKVAN 306 >gi|320450759|ref|YP_004202855.1| bifunctional DNA primase/polymerase, N- family [Thermus scotoductus SA-01] gi|320150928|gb|ADW22306.1| bifunctional DNA primase/polymerase, N- family [Thermus scotoductus SA-01] Length = 330 Score = 81.1 bits (198), Expect = 7e-13, Method: Composition-based stats. Identities = 35/165 (21%), Positives = 63/165 (38%), Gaps = 17/165 (10%) Query: 9 QAKQAIHNGFKLIPLRLGDKRPQR---LGKWEEQLLSSEKIDKL----PACGFGFVCGVG 61 A++ + G++ +PL G+KRP ++ S ++ P CG G + G Sbjct: 12 FAQRYLSYGYRALPLFPGEKRPHPGLVPHGLKDATGDSATLEAWWRACPECGVGLLPGP- 70 Query: 62 EQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTES 121 + D+D+ K+ L P R + + + R+ E + + T Sbjct: 71 --EVLVLDVDAPGAW--ERLKEEHPALLEAPRARTPR-GGVHVYLRLPPEAVGRLTATTK 125 Query: 122 TQGHLDILGCGQ-YFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLL 165 +D+ G G+ Y VA T Y W + E+ PL+ Sbjct: 126 ALPGVDLRGLGRSYLVAPPTTLPTG-AYAWEVAL--RRPEELPLV 167 >gi|160942659|ref|ZP_02089903.1| hypothetical protein FAEPRAM212_00132 [Faecalibacterium prausnitzii M21/2] gi|158446074|gb|EDP23077.1| hypothetical protein FAEPRAM212_00132 [Faecalibacterium prausnitzii M21/2] Length = 169 Score = 81.1 bits (198), Expect = 8e-13, Method: Composition-based stats. Identities = 19/113 (16%), Positives = 40/113 (35%), Gaps = 6/113 (5%) Query: 640 DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWI-- 697 D F + ++ W L+G+ ++ I E ++ E +D ++ Sbjct: 2 DNPFLIEELSEERPGILLWMLEGLHRLLANRYQFTISERSIQNLEAAMADSDNLTQFMQA 61 Query: 698 DDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTL-NLKQKGFIG 749 + E S L ++Y+++ E L + + + LK G G Sbjct: 62 SAYVRFKPDTEERSTYLYRAYTKWCEDNLES---PVPQKKFSQFLLKNAGKYG 111 >gi|288922735|ref|ZP_06416906.1| Bifunctional DNA primase/polymerase [Frankia sp. EUN1f] gi|288345912|gb|EFC80270.1| Bifunctional DNA primase/polymerase [Frankia sp. EUN1f] Length = 350 Score = 80.7 bits (197), Expect = 8e-13, Method: Composition-based stats. Identities = 45/305 (14%), Positives = 77/305 (25%), Gaps = 60/305 (19%) Query: 10 AKQAIHNGFKLIPLRLGDKRPQR---------------LGKW-EEQLLSSEKIDKL---- 49 A A G+ ++PL G+KRP W + L I Sbjct: 49 ALDAAARGWYVLPLLPGEKRPASHPADRCPCTGPCRDGHRTWEQRATLDGATITAYWSAH 108 Query: 50 PACGFGFVCGVGEQPLYAFDIDSKDEK-------------------TANTFKDTFEILHG 90 P G G G L D+D+ + E + Sbjct: 109 PTHGVGIATGP--SGLVVVDLDTPKPGDRPPSAVWAAEGVRTGVHALTVLARRVGESVTP 166 Query: 91 TPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTW 150 T VR G+ + G++ T S +D G VA + + + YT Sbjct: 167 TYAVRTGRGG--WHLYYQAPAGVRLTNTGRSIGPWIDTRAWGGQVVAAG-NTVSGRPYTL 223 Query: 151 TTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREI 210 T + + F T PL + + + Sbjct: 224 THDAPPAPLPP------------WLFQLIQTAPLPPQRPVRVAVGAGRRSAYITAAVNRQ 271 Query: 211 TAFLSCFGEEFYNGSHDEWIPVVMAVHH----ETRGSSKGKEIARRWSKQGSTYDEENFN 266 A+++ N + + + V E + K+ A T+ Sbjct: 272 LAYITHATGGRNNAVYRSAVALGQLVAGGALTEADATDMLKQAAGGHVATDPTFTWAEVE 331 Query: 267 YKWDT 271 + Sbjct: 332 ATISS 336 >gi|290959765|ref|YP_003490947.1| hypothetical protein SCAB_53671 [Streptomyces scabiei 87.22] gi|260649291|emb|CBG72406.1| conserved hypothetical protein [Streptomyces scabiei 87.22] Length = 301 Score = 80.7 bits (197), Expect = 1e-12, Method: Composition-based stats. Identities = 41/250 (16%), Positives = 66/250 (26%), Gaps = 50/250 (20%) Query: 17 GFKLIPLRLGDKRPQRLGKW----------------EEQLLSSEKIDK-LPAC--GFGFV 57 G+ +IPLR K P G+ + L +I++ + G Sbjct: 20 GWPVIPLRPRSKVPALHGERRCPHSGDCAGGHRTFEQRATLDPARIERCWSSGPFNVGIA 79 Query: 58 CGVGEQPLYAFDIDSKDE-------KTANTFKDTFEI--LHGTPIVRIGQKPKILIPFRM 108 G L D+D+ A F+ E RI + Sbjct: 80 TGPA--GLLVVDLDTLKPTDEAGTPDGAANFQALCERAGHTVPATRRIRTPSGGEHLYFT 137 Query: 109 NKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPL--LS 166 G++ TT + +D G VA YT ++D P+ LS Sbjct: 138 APSGVRFANTTGTLTPKVDTRAWGGQVVAPGSITPHG-PYTV--------LDDQPVANLS 188 Query: 167 EEDVEYLFKFFQEITVPLVKDKKSI---------IPSKTWTNNNNRQYTNREITAFLSCF 217 E + L + T P++ E+ + Sbjct: 189 EWLQKALTASQRRATAPILPTLARDADRYAAAVLNREVAAVAATGEGGRQAELLRAVRAV 248 Query: 218 GEEFYNGSHD 227 G G D Sbjct: 249 GRFVAWGDLD 258 >gi|308176189|ref|YP_003915595.1| bifunctional primase/DNA polymerase protein [Arthrobacter arilaitensis Re117] gi|307743652|emb|CBT74624.1| putative bifunctional primase/DNA polymerase protein [Arthrobacter arilaitensis Re117] Length = 301 Score = 80.3 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 21/139 (15%), Positives = 43/139 (30%), Gaps = 8/139 (5%) Query: 8 EQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEK----IDKLPACGFGFVCGVGEQ 63 + A+ G + P G+KRP + + ++ D+ P+ G Sbjct: 18 DAARSLASAGVPVFPCVPGEKRPLTRRGFHDAANDLDQVSAWWDRWPSANLAIPTGPAS- 76 Query: 64 PLYAFDIDSKDEKTANTFKDTFEI--LHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTES 121 + DID + L + L + +++ + ++ Sbjct: 77 GIDVVDIDIGSTGSGVPAFQRARREGLVHGWAALVRTPSGGLHVYF-PAGTSREQPSWQA 135 Query: 122 TQGHLDILGCGQYFVAYNI 140 H+D G G Y +A Sbjct: 136 PMAHIDFRGTGGYVLAPPS 154 >gi|269977396|ref|ZP_06184368.1| P4 family phage/plasmid primase [Mobiluncus mulieris 28-1] gi|269934312|gb|EEZ90874.1| P4 family phage/plasmid primase [Mobiluncus mulieris 28-1] Length = 283 Score = 80.3 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 33/231 (14%), Positives = 64/231 (27%), Gaps = 21/231 (9%) Query: 10 AKQAIHNGFKLIPLRLGD----KRPQRLGKWEEQLLSSEKIDKL----PACGFGFVCGVG 61 A + G+ + P + K P G ++ I + P G Sbjct: 20 AIELAGRGWPVFPCQEAGREHPKAPYVRGGFKSATTDLGMIRRWWKEYPNALIGLAL--- 76 Query: 62 EQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTES 121 + L D+D ++ + ++ L T V G+ + + + + Sbjct: 77 PKTLLVLDVDPRNGGSLEALQEKIGRLPETLRVESGRGDGGTHYYFRHPGIPLYGR---N 133 Query: 122 TQGHLDILGCG-QYFVAYNI-HPKTKKEYTWT-TPPHRFKVEDTPLLSEEDVEYLFKFFQ 178 +D+ G Y +A HP+T Y W V + L+ + + Sbjct: 134 LPEGVDLKEGGKGYVIAPPSLHPETGMPYKWIPGALSSLTVGNVKRLAAKPAPSVASRPT 193 Query: 179 EITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEW 229 DK + T ++ A N + W Sbjct: 194 RFIGYKNTDKWRGVLRVVETAAEGQRNRTLFWAACRMAEN----NADQNAW 240 >gi|254504973|ref|ZP_05117124.1| hypothetical protein SADFL11_5012 [Labrenzia alexandrii DFL-11] gi|222441044|gb|EEE47723.1| hypothetical protein SADFL11_5012 [Labrenzia alexandrii DFL-11] Length = 1485 Score = 80.3 bits (196), Expect = 1e-12, Method: Composition-based stats. Identities = 35/270 (12%), Positives = 73/270 (27%), Gaps = 29/270 (10%) Query: 34 GKWEEQLLSSEKIDKLPA-------CGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFE 86 W+ + + +++L G + L D+D+ + +D Sbjct: 57 DGWQN-VTAETAVERLSDNLRNPYPHNIGVLL---NDGLVCVDVDTDHPGIVDAVEDWAR 112 Query: 87 ILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTES-TQGHLDILGCGQYFVAYNIHPKTK 145 L G + ++G K + F ++ +DIL G+ + + Sbjct: 113 SLGGDYVAKVG--GKGVSVFVRLEDPDLHLPGKLHVGDHLIDILASGRQTIVPPSMHTSG 170 Query: 146 KEYTWTTP--PHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNR 203 K Y W ++D P L+E + L K +++ + Sbjct: 171 KRYRWVGDVALEDSSLDDLPSLNETAWQALLDALGVHGDLAGKGSALG-SGQSYEKDGFS 229 Query: 204 QYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEE 263 +Y T V + R + +++ ST Sbjct: 230 KYLEDLATESFDHMARWMRPLELARIQRVG----NGFRAVNT--------TRKSSTNRPT 277 Query: 264 NFNYKWDTFDFEEIGDTAKKRSTFTSLFYH 293 +W + D A L+ Sbjct: 278 AQRTQWLEISPGRVVDKATGVYGIAKLYQA 307 >gi|307825540|ref|ZP_07655758.1| conserved hypothetical protein [Methylobacter tundripaludum SV96] gi|307733426|gb|EFO04285.1| conserved hypothetical protein [Methylobacter tundripaludum SV96] Length = 803 Score = 79.9 bits (195), Expect = 1e-12, Method: Composition-based stats. Identities = 54/328 (16%), Positives = 101/328 (30%), Gaps = 41/328 (12%) Query: 446 PTKELYITKSTGTPFVEGEP------SQEFLDLVSGYFESE----EVMDYFTRCVGMAL- 494 T + LDL+ E V ++ R + L Sbjct: 444 FDPTEKDKNITCNVWDGFPTTPIDGNCDRLLDLLMYMCADEKNSDAVYNWVLRWLAYPLQ 503 Query: 495 LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLI 554 G K + I I G G+GK+ ++I +G I + S I G L Sbjct: 504 HPGAKMKTTIVIHGPQGTGKNLFFDVILGIYGKYGRII-DQSAIEDKFNDCFGGKLFMLA 562 Query: 555 RLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHL 614 +++ ++ N K+K + GD + Y E+ F+ + Sbjct: 563 D------EVVARSDLYHIKN--KLKGLITGDRIRINPKNMAAYEEANHVNLVFLSNERMP 614 Query: 615 FVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISK----G 670 V + DD RR+ VI + A + LE + + Y+ Sbjct: 615 VVLDQDD---RRHQVI-WT------PAKLGPDFYKEIALEIDNGGAEALHYYLVNLPLGD 664 Query: 671 LDVDIPEVCLKAKEEERQGT-DTYQAWIDDCCDIG----ENLWEESHSLAKSYSEYREQE 725 + + AK++ + + D+ + D+ + S + Y+ + +E Sbjct: 665 FNPHTKPLMTAAKQDLQDLSKDSIIRFYDEWNTKEISGVPPIPALSEDIYTLYTHWCRRE 724 Query: 726 LNYDRKRISTRTVTLNLKQKGFIGGIKR 753 R + + K+ G KR Sbjct: 725 G--VRAAPKNKAIDAIAKRPGVKKERKR 750 >gi|226363434|ref|YP_002781216.1| hypothetical protein ROP_40240 [Rhodococcus opacus B4] gi|226241923|dbj|BAH52271.1| hypothetical protein [Rhodococcus opacus B4] Length = 904 Score = 79.9 bits (195), Expect = 1e-12, Method: Composition-based stats. Identities = 35/212 (16%), Positives = 65/212 (30%), Gaps = 25/212 (11%) Query: 3 VMQWKEQAKQAIHNGFK-LIPLR-LGDK--RPQRLGKWEEQLLSSEKIDKL----PACGF 54 + + A + + G++ ++P + G K P+ +E S + PA Sbjct: 11 ASPYADGATELWNAGWRGVLPTKRPGTKWPIPEGYTGYEGVYPSYADLMAWTEDKPASNI 70 Query: 55 GFVCGVGEQPLYAFDIDSKDEKTAN----TFKDTFEILHGTPIVRIGQKPKILIPFRMNK 110 + + D+D+ D+K + + L T I I F Sbjct: 71 ALRM---PKNIIGIDVDAYDKKQGAVTFARALELWGPLPDTWISTSRNDGVSGIRFFTIP 127 Query: 111 EGIKKKKTTE-STQGHLDI--LGCGQYFVAYNIHPKTKKEYTWTTPPHRF-------KVE 160 EG + E ++I VA ++HP T Y W P + Sbjct: 128 EGTALRTIIELDGTKDIEIVQYFHRYAIVAPSVHPLTSSTYRWVMPDGTDAPETVVPEPH 187 Query: 161 DTPLLSEEDVEYLFKFFQEITVPLVKDKKSII 192 + P L + + L + P+ Sbjct: 188 ELPTLPDRWLTALEAPIVDTLQPVDVQAALRD 219 >gi|62184576|ref|YP_220481.1| hypothetical protein pFP11.26 [Streptomyces sp. F11] gi|61661460|gb|AAX51330.1| unknown [Streptomyces sp. F11] Length = 301 Score = 79.9 bits (195), Expect = 2e-12, Method: Composition-based stats. Identities = 41/288 (14%), Positives = 74/288 (25%), Gaps = 33/288 (11%) Query: 10 AKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLL-SSEKIDK-LPAC--GFGFVCGVGEQPL 65 A + G + PL +G K P R WEE+ E I++ G CG L Sbjct: 5 ALRYAERGMFVHPLLVGAKEP-RWTNWEERATRDPEVIERTWGRAPFNIGVACGP--SGL 61 Query: 66 YAFDIDSKDEKTANTFKDTFE---------------ILHGTPIVRIGQKPKILIPFRMNK 110 A D+D E + + + + T VR + + +R Sbjct: 62 VALDLDVPHEGEVSGSPEIVDGVTMLDSLAARTPGARVTPTLTVRTPSGGR-HLVYRAPA 120 Query: 111 EGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDV 170 G+ + T + LD G Y V + Y P + Sbjct: 121 -GVAVRNTARTLGFCLDTRAAGGYVVGIGSVVE-GAAY-VLEDGSPTDPAVLPGWLLTLI 177 Query: 171 EYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWI 230 K + P D + + T +++ + + G + + Sbjct: 178 TAAPKPPKAGGAPRRADVVARLRELTRQGTREQRWAAGILRSECGELAAMRQEGGRNNRL 237 Query: 231 PVVM-------AVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDT 271 + A ++ S + Sbjct: 238 NLAAYRAGQLVAAGLVDHDVAEEHLTEAAQSAGLGVDTPREIEKTIRS 285 >gi|183984415|ref|YP_001852706.1| hypothetical protein MMAR_4444 [Mycobacterium marinum M] gi|183177741|gb|ACC42851.1| hypothetical protein MMAR_4444 [Mycobacterium marinum M] Length = 400 Score = 79.9 bits (195), Expect = 2e-12, Method: Composition-based stats. Identities = 34/302 (11%), Positives = 72/302 (23%), Gaps = 40/302 (13%) Query: 7 KEQAKQAIHNGFKLIPLRLGDKRPQRL--GKWEEQLLSS-----EKIDKLPACGFGFVCG 59 + A+ G +IP++ G K P W + E + P G G Sbjct: 18 ADAAETYAKAGLHVIPVKPGTKNPGSYLGRGWPARATDDLEVVREWWRRWPDAGIAVHVG 77 Query: 60 VGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKE-----GIK 114 L D+D + + + E + +R+ + G+ Sbjct: 78 GC--GLVVVDVDVPENVPDSLWV-LLESAAFRSTTTDADSKRGYYFYRLRRGELFGCGLG 134 Query: 115 KKKTTESTQGHLDILGCGQYFVA-YNIHPKTKKEYTWTTPPHRFKVE-------DTPLLS 166 + K + + ++ G V HP+ Y + + P Sbjct: 135 RLKPPKGKRWG-EVKCYGGAVVLGPTEHPREGGRYATAPGGTLSYLPAEIADGLNAPDTD 193 Query: 167 EED----------VEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSC 216 + V+ + + P + TN + + A Sbjct: 194 RAEAVTPGELAARVKAFLETNIDNDAPHALAPICRSFDPSPTNRHP-TMWDALCWAMREA 252 Query: 217 FGEEFYNGS-----HDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDT 271 F W + + + + + + E + Sbjct: 253 KAGRFPARDAAIALRARWTDAIGGQYRGGDPDEFDRMLRDAVAVADADGTREELAARAHR 312 Query: 272 FD 273 F Sbjct: 313 FT 314 >gi|329936166|ref|ZP_08285959.1| hypothetical protein SGM_1451 [Streptomyces griseoaurantiacus M045] gi|329304276|gb|EGG48156.1| hypothetical protein SGM_1451 [Streptomyces griseoaurantiacus M045] Length = 300 Score = 79.5 bits (194), Expect = 2e-12, Method: Composition-based stats. Identities = 36/257 (14%), Positives = 54/257 (21%), Gaps = 44/257 (17%) Query: 10 AKQAIHNGFKLIPLRLGDKRPQRLG---------------KWEEQLLSS-----EKIDKL 49 A A G+ + PLR G KRP G KWE++ + + Sbjct: 8 ALDAAARGWHVFPLRPGTKRPALHGETACPGTGPCERGHRKWEQRATTDPGRIRATWSRA 67 Query: 50 PACGFGFVCGVGEQPLYAFDIDSK----------DEKTANTFKDTFEILHGTPI---VRI 96 P G G L D+D D G + R Sbjct: 68 P-YNVGIATGP--SGLVVVDLDLPKNDDKGKGSSDAPCGAASFGALCERAGHAVPDTYRT 124 Query: 97 GQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHR 156 + GI+ + + +D G Y VA Y Sbjct: 125 RTASGGTHLYFTAPPGIRLGNSAGTVAPLVDTRAWGGYVVAAGSTTPAG-AYEALCGSVA 183 Query: 157 FKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSC 216 + + + Q S T N Sbjct: 184 APL------PGWLLS-ILTPAQRPAERASVAVLVQSRSYADTALANESRNVASAVTGQRE 236 Query: 217 FGEEFYNGSHDEWIPVV 233 + +I Sbjct: 237 ATLFRAARALGRFIAWG 253 >gi|222476074|ref|YP_002564595.1| hypothetical protein Hlac_3173 [Halorubrum lacusprofundi ATCC 49239] gi|222454445|gb|ACM58709.1| conserved hypothetical protein [Halorubrum lacusprofundi ATCC 49239] Length = 417 Score = 79.2 bits (193), Expect = 2e-12, Method: Composition-based stats. Identities = 42/298 (14%), Positives = 83/298 (27%), Gaps = 43/298 (14%) Query: 5 QWKEQAKQAIHNGFKLIPLRLGDK---RPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVG 61 QW ++ +P+ G W+ + E + A G GFV Sbjct: 21 QWVCWREETRDGKPTKVPVTPGTGGFASSTDPETWDAFETALEYTETEHADGVGFVF-TD 79 Query: 62 EQPLYAFDI-DSKDEKTA---NTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKK 117 + P+ D+ D +D +T + +D + L V ++ + Sbjct: 80 DDPIVGVDLDDCRDPETGDVDDAAQDIIKRLDSYTEVSPSGTGYHVLI-------TGELP 132 Query: 118 TTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFF 177 + +G +++ ++F H T + + + E V+ + Sbjct: 133 EGRNRRGSVELYDTARFFTVTGDHVDE------TLGRVARRQDALTAIHREYVQDTERDT 186 Query: 178 QEITVP---LVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNG---SHDEWIP 231 + P + + + + + A E +NG +D Sbjct: 187 ASESEPGNGTDDQSTATGTADVDVDLEDEDLLEKARNASNGEKFERLWNGNTVGYDSQSE 246 Query: 232 VVMAV---------------HHETRGSSKGKEIARRWS-KQGSTYDEENFNYKWDTFD 273 MA+ R S +E GSTY E+ T Sbjct: 247 ADMALCCLLAFWTGGDRTQMKQLFRQSGLLREKWDEVHYADGSTYGEKTIERAIATTS 304 >gi|295096871|emb|CBK85961.1| Predicted P-loop ATPase and inactivated derivatives [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 728 Score = 79.2 bits (193), Expect = 2e-12, Method: Composition-based stats. Identities = 36/197 (18%), Positives = 65/197 (32%), Gaps = 15/197 (7%) Query: 33 LGKWEEQLLSSEKIDKL---PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILH 89 + +W E +++ + P G G A D DS+DE + T L Sbjct: 63 IAQWTEHVVTEHDFARWSKEPDYGICVRTG---HGWLALDCDSEDEDIQADIRKTLVQLL 119 Query: 90 G--TPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKE 147 G P K L + + K+ G +++L GQ FVA H + Sbjct: 120 GELPPRRWRANSNKCLYLLAVEGDFRKRIHRLAGDMGIIELLANGQQFVACGTH-SSGAR 178 Query: 148 YTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTN 207 W ++ P+++ + +E L++ E V + + + Sbjct: 179 IEWDGGL----PDEPPVITADQLETLWQRLAEQLPVSVTTEAGSTKMRDRSTFTP--GAT 232 Query: 208 REITAFLSCFGEEFYNG 224 E +L G +G Sbjct: 233 DETAEYLDANGWTLLDG 249 >gi|330857717|gb|AEC46815.1| primase [Xanthomonas vesicatoria] Length = 803 Score = 79.2 bits (193), Expect = 3e-12, Method: Composition-based stats. Identities = 59/376 (15%), Positives = 105/376 (27%), Gaps = 34/376 (9%) Query: 394 QNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYIT 453 + + + S + + +D + + Sbjct: 401 TVFDHQEHMLVALGDMRDACVRRELHRAWLESPQRAIVRVQEVDFDPSGCKPG---ITCN 457 Query: 454 KSTGTPFVEGE-PSQEFLDLVSGYFESEE----VMDYFTRCVGMAL-LGGNKAQRFIHIR 507 G P V E + L L+ +E + D+ + + L G K + I I Sbjct: 458 LFAGWPTVPQEGTCDKLLQLLWHMCGNEANQRMLYDWVIKWLAYPLQHPGAKMKSTIVIH 517 Query: 508 GVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISET 567 G G+GK+ + FG + + S + A + L +++ T Sbjct: 518 GPQGTGKNMFFDEYMKLFGEYGRV-LDQSALEDKFNDWASRKLFLLAD------EVVART 570 Query: 568 NENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627 N K+K + GD + Y E + F+ V DD RR+ Sbjct: 571 EVYHLKN--KLKALITGDRIRINPKNIQAYEEDNHANLVFLSNEAMPVVLEEDD---RRH 625 Query: 628 IVIPFDKPIANRDASFAQKLETKYTLEAKK-WFLKGVKAYISKGLDVDIPEVCLKAKEEE 686 VI + R A + L+ + G + AK E Sbjct: 626 AVIWTPDKLPGRVLPGGAGEIRAGGTAALHHYLLQVDLGDFTNGTNPP----MTAAKAEL 681 Query: 687 RQ-GTDTYQAWIDDCCDIG-ENLW---EESHSLAKSYSEYREQELNYDRKRISTRTVTLN 741 G D+ Q ++D+ L S + Y + K + Sbjct: 682 INLGQDSPQRFLDELYGQDIPGLKPRPAPSKEWYEVYKVWC---GREGVKPAPSPKFINA 738 Query: 742 LKQKGFIGGIKREKIE 757 L +K I R + Sbjct: 739 LVRKRGITHPDRARKR 754 >gi|326331498|ref|ZP_08197788.1| putative prophage Lp4 protein 7, DNA replication [Nocardioidaceae bacterium Broad-1] gi|325950754|gb|EGD42804.1| putative prophage Lp4 protein 7, DNA replication [Nocardioidaceae bacterium Broad-1] Length = 304 Score = 79.2 bits (193), Expect = 3e-12, Method: Composition-based stats. Identities = 31/212 (14%), Positives = 58/212 (27%), Gaps = 11/212 (5%) Query: 7 KEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKL----PACGFGFVCGVGE 62 K+ A + P G K P L +++ +S ++ + P G G Sbjct: 26 KDAAVALATTRIPVFPCVPGGKEPLTLRGFKDASISIRQVQRWWQRHPDANIGIPTGAAS 85 Query: 63 QPLYAFDIDSKDEKTANTFKDTFEI--LHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120 L A D+D ++T D L + L + + + ++ Sbjct: 86 -GLAAVDVDVHGDRTGFAAFDRAGRAGLVDRWSWLVRTPSGGLHAYFRPIDP--EMRSWS 142 Query: 121 STQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEI 180 HLD G G Y +A + L + + + + Sbjct: 143 LPGQHLDFRGDGGYVIAPPSRISNSDATSRAYQVIAVAQHQARPLDSDALRRFLDPPRAV 202 Query: 181 TVPLVKDKKSIIPSKT--WTNNNNRQYTNREI 210 P P + W N+ + Sbjct: 203 RPPAALTLGDARPDRLAHWVATRPEGARNQSL 234 >gi|289803544|ref|ZP_06534173.1| bacteriophage P4 DNA primase [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 367 Score = 78.8 bits (192), Expect = 4e-12, Method: Composition-based stats. Identities = 33/139 (23%), Positives = 47/139 (33%), Gaps = 9/139 (6%) Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYFE 478 R +G ++G+LD TG K ++ F + F + Sbjct: 221 RRLIGFRNGVLDTATGTFSPHHKSHWLRTLCDVDFTSPVEGETLETHAPHFWRWLDRAAG 280 Query: 479 -SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537 E D + M L Q F+ + G GGSGKS L + G +A Sbjct: 281 GKPEKRDVILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATMLAGEDNATSATIET 340 Query: 538 IMQNRPPEAGKANPSLIRL 556 + R A SLIRL Sbjct: 341 LESPRERAA-LIGFSLIRL 358 >gi|90962626|ref|YP_536542.1| hypothetical protein LSL_1657 [Lactobacillus phage Sal3] gi|90821820|gb|ABE00459.1| Hypothetical protein, phage associated [Lactobacillus phage Sal3] Length = 256 Score = 78.4 bits (191), Expect = 4e-12, Method: Composition-based stats. Identities = 30/227 (13%), Positives = 67/227 (29%), Gaps = 31/227 (13%) Query: 8 EQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPAC--GFGFVCGVGEQPL 65 +Q + + G + P+ K+P + + + I + + + L Sbjct: 5 DQVIEMVQRGLYVYPIVPNGKQPIKDYSYLKATQDIALIKRWFMDEPNINIGLNLAKSNL 64 Query: 66 YAFDIDSKDEKTANTFKDT--FEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQ 123 DID+ + + + V + + +R + +KT Sbjct: 65 IIVDIDNHNNDLQAPLQSLSNLGYNLPSDYVERTKSGGLHFYYRCSDGIPATRKTKFID- 123 Query: 124 GHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVP 183 +D+L + V T + ++D P ++ L +P Sbjct: 124 -GVDLLSD--FVVTSPS--------TNYKILNGATLDDIPQTPNWIIKAL----DNRAMP 168 Query: 184 LVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWI 230 K + + P + + Y EI + G+ + WI Sbjct: 169 TDKMQDNPTPYRRYYTG----YLIDEIVNGVDA-------GNRNNWI 204 >gi|295396334|ref|ZP_06806501.1| N- superfamily bifunctional DNA primase/polymerase [Brevibacterium mcbrellneri ATCC 49030] gi|294970829|gb|EFG46737.1| N- superfamily bifunctional DNA primase/polymerase [Brevibacterium mcbrellneri ATCC 49030] Length = 208 Score = 78.4 bits (191), Expect = 4e-12, Method: Composition-based stats. Identities = 20/167 (11%), Positives = 49/167 (29%), Gaps = 10/167 (5%) Query: 10 AKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKL----PACGFGFVCGVGEQPL 65 A++ +G + P +KRP + + E+++ P G G + Sbjct: 25 ARELAQSGVPVFPCVPYEKRPLTPRGFHDASADPEQVEMWWRHTPLASIGIPTGQPS-GM 83 Query: 66 YAFDIDSKDEKTANTFKDTFEI---LHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTEST 122 A D+D + G ++ + + ++++ ++ Sbjct: 84 VAVDVDQHGRVDGYQAIRRARQAGLVAGWEMLVRTPTGGMHAYY--PAAPGLEQRSWQAA 141 Query: 123 QGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEED 169 + +D G G Y + +P+ S+ Sbjct: 142 RAGVDFRGDGGYVIVPPSLRSISGATVSYRVESVIPGPASPIDSDAL 188 >gi|170744933|ref|YP_001773588.1| hypothetical protein M446_6918 [Methylobacterium sp. 4-46] gi|168199207|gb|ACA21154.1| hypothetical protein M446_6918 [Methylobacterium sp. 4-46] Length = 681 Score = 78.4 bits (191), Expect = 4e-12, Method: Composition-based stats. Identities = 52/374 (13%), Positives = 115/374 (30%), Gaps = 43/374 (11%) Query: 433 DGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF--ESEEVMDYFTRCV 490 +G++ E + + +L + + G + E Y + Sbjct: 293 NGLI-FEPEKGREVDGQLNLWRGFAIQPQPG-DWTRLRRHIREVLAAGDAEADRYIIAWL 350 Query: 491 GMAL-LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549 L G +A+ + +G G+GK TL N + G ++A + Sbjct: 351 AWLLQNPGRRAEVALVFKGTKGTGKGTLGNALCRILGQHATHISDAEHLSGRFN------ 404 Query: 550 NPSLIRLMGSRIVIISETN-ENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFI 608 L + + E D+ +K++ + + P + Sbjct: 405 ----AHLRDACFLFADEAYWPGDKSAEGSLKRLITEPDLFIEGKGRDG-VTVPNRLHVLM 459 Query: 609 VPNKHLFVR-NPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYI 667 N+ V D+ RR+ V + +D + L + L + A+ Sbjct: 460 ASNEDWIVPAGADE---RRFAVF-AVSDVHKQDPEWFGPLYDEMEAGGLAAMLHDLLAFD 515 Query: 668 SKGLDVDIPEVCLKA--KEEERQGTDTYQAWIDDCCDI----GENLWEESHSLAKSYSEY 721 KG +V A E++ + W + + G + E + +++ + E Sbjct: 516 LKGWHPR--QVVRTAALVEQQERSLRPLDEWWVELLETGILEGADPREPNRAVSTGWDEE 573 Query: 722 REQELNYDRKR----------ISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIK---G 768 N KR +S + T++ +Q G K ++ ++ Sbjct: 574 VPAGFNTRSKRRRGLFDQAREMSPKLKTVSDRQLGSYLKSKGCSNHRKVMRRQGWTFPPL 633 Query: 769 LKLKPAFESVDDNS 782 +L+ +E++ Sbjct: 634 AQLRAEWEALFPGW 647 >gi|299820270|gb|ADJ54280.1| hypothetical phage/plasmid primase [archaeon enrichment culture clone 1(2010)] Length = 575 Score = 78.4 bits (191), Expect = 4e-12, Method: Composition-based stats. Identities = 60/327 (18%), Positives = 106/327 (32%), Gaps = 39/327 (11%) Query: 468 EFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 +F F+ +E +YF VG L N G SGKST++ L+ Sbjct: 262 KFYQFFRKQFDDKEW-EYFIDLVGALLKPSNSKLIGYI-DGPTDSGKSTILYLLTRPIKK 319 Query: 528 QYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTG-GDC 586 + S L L G I+I+ D++ A + + G D Sbjct: 320 MVATISSISIKQG--------YVFGLEMLYGKHILIM--PERIDKLPAELLNLLLGKRDQ 369 Query: 587 MTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD----DAWWRRYIVIPFDKPIANRDAS 642 + + N + D DA R I KPI Sbjct: 370 ILIERKNK-PAVMMESLKLAIFAGNGPPKIEYLDPDALDALLNRLSYIR-IKPIQGPKIE 427 Query: 643 FAQKLETK-YTLEAKKWFLKGV----KAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWI 697 +L + + W G + + + +D ++++EE T + ++ Sbjct: 428 DIDRLISDIDIMSFLMWC--GWNLRQREWQIRKRGIDEIWEVIQSREE------TVEKFL 479 Query: 698 D-DCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKI 756 + D I + + L +Y ++ ++ L S L +KG G+ Sbjct: 480 ESDWVKIDPDGRIKGTVLYNAYVKFVKRVLKMT--PTSLTNFYNELDEKGSKYGVSTYIR 537 Query: 757 EKEWKSKRIIKGLKLKPAFESVDDNSN 783 EK ++GL+L A + D +S Sbjct: 538 EK----VTWVRGLRLTEASDVTDKDSQ 560 >gi|213163899|ref|YP_002321451.1| putative primase [Stenotrophomonas phage S1] gi|212295210|gb|ACJ24725.1| gp1 [Stenotrophomonas phage S1] Length = 804 Score = 78.0 bits (190), Expect = 6e-12, Method: Composition-based stats. Identities = 55/338 (16%), Positives = 112/338 (33%), Gaps = 42/338 (12%) Query: 448 KELYITKSTGTPFVEGE-PSQEFLDLVSGYFESEE----VMDYFTRCVGMAL-LGGNKAQ 501 + G P V E L L+ +E + D+ + + L G K + Sbjct: 452 PGVTCNLFAGWPTVPQEGNCDRLLQLLWHMCGNEANQKALYDWVVKWLAYPLQHPGAKMK 511 Query: 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRI 561 I I G G+GK+ + +G + + + + A + L Sbjct: 512 STIVIHGPQGTGKNMFFDEYMKLYGEYGRV-LDQAALEDKFNDWASRKLFLLAD------ 564 Query: 562 VIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDD 621 +++ T N K+K + GD + Y E + F+ V DD Sbjct: 565 EVVARTEVYHLKN--KLKALITGDRIRINPKNIQAYEEDNHANLVFLSNEAMPVVLEEDD 622 Query: 622 AWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISK----GLDVDIPE 677 RR+ VI D +Q+ ++ + + + Y+ + G Sbjct: 623 ---RRHAVI------WTPDK-LSQEFYSEVLSDIRNGATAALHHYLLQVDLTGFTNGTNP 672 Query: 678 VCLKAKEEERQ-GTDTYQAWIDDCCDIGEN------LWEESHSLAKSYSEYREQELNYDR 730 +AKEE D+ Q ++D+ G++ + S + Y + +E Sbjct: 673 PMTQAKEELIGLSQDSPQRFLDEL--YGDDIPGLKPMPALSKEWYEVYKAWCAREGMP-- 728 Query: 731 KRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKG 768 + + L +K + ++ K ++ ++ + G Sbjct: 729 RPAPSPKFINALVRKR--QILHPDRARKRYQIEQTVNG 764 >gi|296139150|ref|YP_003646393.1| Bifunctional DNA primase/polymerase [Tsukamurella paurometabola DSM 20162] gi|296027284|gb|ADG78054.1| Bifunctional DNA primase/polymerase [Tsukamurella paurometabola DSM 20162] Length = 808 Score = 77.6 bits (189), Expect = 7e-12, Method: Composition-based stats. Identities = 34/251 (13%), Positives = 75/251 (29%), Gaps = 29/251 (11%) Query: 2 PVMQWKEQAKQAIHNGFK-LIPLRLGDKRPQRLG--KWEEQLLSSEKIDKLPAC------ 52 P + A+ + G++ ++PL G K P + +I Sbjct: 11 PADGYAAWAQAYLDAGWRGVLPLPEGMKLPPPTSYTGQGTPDPDAAQIAAWARSPRFERG 70 Query: 53 GFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTP-----IVRIGQKPKILIPFR 107 + A D+D+ D K A E G P +R Sbjct: 71 NLALRL---PPNVIALDVDNHDGKPAAETIAALERAAGVPLPQTWTSTSRSDGSCHAFYR 127 Query: 108 MNKEGIKKK--KTTESTQGHLDILGCG-QYFVAYNI-HPKTKKE-YTWTTP-------PH 155 ++ + + + +D+L G +Y + + +P Y W P Sbjct: 128 VSLLAGDRGWPGSLKQFGPGVDLLQTGHRYSLVWPSTNPANDGAHYRWYRPDGSPAAVGE 187 Query: 156 RFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLS 215 + ED L + ++ + + + + + + + + R + + ++ Sbjct: 188 IPRPEDLTELPQSFIDAITAPRSISGEKATEAEATALLDRLAAHPDYRAPMSERMAEAVA 247 Query: 216 CFGEEFYNGSH 226 E+F H Sbjct: 248 DAIEQFPADGH 258 >gi|22788811|ref|NP_690523.1| Orf104 [Heliothis zea virus 1] gi|22671571|gb|AAN04398.1|AF451898_103 Orf104 [Heliothis zea virus 1] Length = 1585 Score = 77.6 bits (189), Expect = 8e-12, Method: Composition-based stats. Identities = 47/249 (18%), Positives = 83/249 (33%), Gaps = 29/249 (11%) Query: 472 LVSGYFESEE--VMDYFTRCVGMALLGGNKAQRFI-HIRGVGGSGKSTLMNLIKYAFGNQ 528 +S F+ E + DYF L K Q+ + G GK+TL+NL + Sbjct: 1160 FLSETFKYNEHVLRDYFMYTC--CLYQPCKVQKHMNIYYGSPRCGKTTLLNLHTEMCNDD 1217 Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGD-CM 587 + + ++ +P+ I L I II+E + I+ +K MTG D Sbjct: 1218 AIYRTSKEY----KDVKSSGPSPNAIHLKTKYISIINELS---SISNNLLKTMTGDDGTN 1270 Query: 588 TARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN--RDAS--- 642 R + + + N ++ PD+A R I+ F+ + +D + Sbjct: 1271 DDRTLFSTKFPMLSSCTFLVAACNHLPYMTMPDEAIRDRIIIFLFEMKATDVVKDPNCML 1330 Query: 643 -FAQKLETKYTLEA------KKWFLKGVKAYISKGLDVDIPEVCLKAKE----EERQGTD 691 FA+ K +E L + P+ + E + Sbjct: 1331 TFAENYTYKEQMEVSKMAPLLSNLLYVYFRQHRNDYGIVSPKCINRVSTKLLYEFMLKNN 1390 Query: 692 TYQAWIDDC 700 +D C Sbjct: 1391 YLYKVLDMC 1399 >gi|327541459|gb|EGF27997.1| Bifunctional DNA primase/polymerase [Rhodopirellula baltica WH47] Length = 339 Score = 77.6 bits (189), Expect = 8e-12, Method: Composition-based stats. Identities = 49/299 (16%), Positives = 90/299 (30%), Gaps = 34/299 (11%) Query: 1 MPVMQWKEQAKQAIHNGFKLIPLRL-GDKRPQ--RLGKWEEQLLSSEKIDKLP--ACGFG 55 M Q + A+ + G +IPL+ G K P ++ ++ + +++ + G G Sbjct: 23 MASSQ-LDLARAYVSAGVSVIPLKTDGTKAPALASWNEYRKRFAADDELRRWFRRPAGIG 81 Query: 56 FVCGVGEQPLYAFDIDSKDEKTANTFKDTFEI-LHGTPIVRIGQKPKILIPFRMNK-EGI 113 VCGV L D D +T + L + +P+R G Sbjct: 82 LVCGVQSNGLEVLDFDEDPVETMLEWAKILPEGLLDRLTIVATGGGGFHVPYRCESVTGN 141 Query: 114 KKKKTTESTQGHLDILGCGQYFVAYNI---HPKTKKEYTWTTPPHRFKVEDTPLLSEEDV 170 K ++ G G Y V + K Y W T + P +S ++ Sbjct: 142 TKIAMAAEGGVLIESRGDGGYVVGVGSATRVHSSGKSY-WQTAGE--PLPSLPTVSADER 198 Query: 171 EYL----FKFFQEITVPLVKDKKSIIPSKTWTNNNNRQ-----YTNREITAFLSCFGEEF 221 + + + + +K + T ++ + + L G Sbjct: 199 KLMWMAAAELDERPDAADEFVRKRRAQLRPLTKPDSDTPWGAFDESADWREILEPAGWTT 258 Query: 222 YNGSHDEWIPVV-----MAVHHETRGSSKGKEIARRWSKQGSTYD-EENFNYKWDTFDF 274 NG H W AV ++ + +S E + W F Sbjct: 259 TNGKH--WTRAGKTFGTSAVLGTANNGNEILTV---FSTNAGELSVEGTGHRNWGKFAA 312 >gi|254454539|ref|ZP_05067976.1| Bifunctional DNA primase/polymerase, N-terminal domain family [Octadecabacter antarcticus 238] gi|198268945|gb|EDY93215.1| Bifunctional DNA primase/polymerase, N-terminal domain family [Octadecabacter antarcticus 238] Length = 219 Score = 77.6 bits (189), Expect = 9e-12, Method: Composition-based stats. Identities = 42/225 (18%), Positives = 76/225 (33%), Gaps = 26/225 (11%) Query: 39 QLLSSEKIDKL----PACGFGFVCGVGEQPLYAFDIDSKDEKTA-NTFKDTFEILHGTPI 93 Q +ID+ P G G + DID KD+K D Sbjct: 14 QSRDHRQIDRWWDKHPDALPGLPTGAAS-GVAVLDIDRKDDKDGFTALSDAGLDRFTDGR 72 Query: 94 VRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTP 153 + + + +G+ + +T +D+L G Y +A T+ Y ++ Sbjct: 73 YVVDTPSGGQHIYFAHIDGL--RCSTSKIAEGVDVLADGGYVIAPGAE-TTQGTYPTSSN 129 Query: 154 PHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAF 213 V+ P + L + T P + + Sbjct: 130 SEDMTVKPFPKT----LRKLVGQRKATTKPKSSEPAQA------------WKIVKAALKS 173 Query: 214 LSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGS 258 + G+ + S D W+ ++ A+HHE+ GS+KG+++A WS Sbjct: 174 IPNNGKG-ADVSRDWWVKMLAALHHESSGSAKGRKLAHTWSGTCQ 217 >gi|239905658|ref|YP_002952397.1| hypothetical protein DMR_10200 [Desulfovibrio magneticus RS-1] gi|239795522|dbj|BAH74511.1| hypothetical protein [Desulfovibrio magneticus RS-1] Length = 677 Score = 77.2 bits (188), Expect = 9e-12, Method: Composition-based stats. Identities = 37/193 (19%), Positives = 63/193 (32%), Gaps = 26/193 (13%) Query: 12 QAIHNGFKLIPLR-----LGD-----KRP--QRLGKW--EEQLLSSEKIDKLPACGFGFV 57 + + + F LIPL G KRP KW +++ S + A G Sbjct: 28 EFLSDSFSLIPLVGGFPAPGQSSSEFKRPTEANWTKWCVQKRQFSRDDFSPERA---GVA 84 Query: 58 CGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKK 117 CG + D+D + + E L T V+ G + + ++ Sbjct: 85 CGPAS-GVLVLDVDDMGKFREWLAANVGEELPATLTVKTGGIGERYHFYFQYPN-DGQRY 142 Query: 118 TTESTQGHLDILGCGQYFVAYNI-HPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEY-LFK 175 S + DI G G + HP+T+K Y P + + Y L++ Sbjct: 143 PNRSVKDVFDIRGVGGEVLCPGSLHPETRKPYIIVESPE-----NLAPAPDWLRNYSLYR 197 Query: 176 FFQEITVPLVKDK 188 + + D Sbjct: 198 TIKPLAPVSTSDA 210 >gi|239928908|ref|ZP_04685861.1| hypothetical protein SghaA1_11855 [Streptomyces ghanaensis ATCC 14672] gi|291437235|ref|ZP_06576625.1| hypothetical protein SSFG_02335 [Streptomyces ghanaensis ATCC 14672] gi|291340130|gb|EFE67086.1| hypothetical protein SSFG_02335 [Streptomyces ghanaensis ATCC 14672] Length = 296 Score = 77.2 bits (188), Expect = 1e-11, Method: Composition-based stats. Identities = 31/202 (15%), Positives = 48/202 (23%), Gaps = 30/202 (14%) Query: 10 AKQAIHNGFKLIPLRLGDKRPQRLG---------------KWEEQLL-SSEKID-KLPAC 52 A A G+ + PLR G KRP G KWE++ ++I Sbjct: 9 ALDAAARGWHVFPLRPGTKRPALHGEKTCTRTGPCARGHRKWEQRATVDPDRIRAAWSQA 68 Query: 53 --GFGFVCGVGEQPLYAFDIDSK------DEKTANTFKDTFEILHGTPIVRIGQK---PK 101 G G L D+D D G + + Sbjct: 69 PFNVGIATGP--SGLLVVDLDVPKDKGSSDAPGGAATFAALCERAGHAVPTTYRTRTASG 126 Query: 102 ILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVED 161 + G++ T + +D G Y VA Sbjct: 127 GTHLYFTAPNGVRLPNTAGTVADSVDTRAWGGYVVAAGSTTPAGPYEALCGSAAAVLPAW 186 Query: 162 TPLLSEEDVEYLFKFFQEITVP 183 + + F+ V Sbjct: 187 LQSILQPAPARPVGPFRLPAVD 208 >gi|330467066|ref|YP_004404809.1| bifunctional DNA primase/polymerase [Verrucosispora maris AB-18-032] gi|328810037|gb|AEB44209.1| bifunctional DNA primase/polymerase [Verrucosispora maris AB-18-032] Length = 304 Score = 77.2 bits (188), Expect = 1e-11, Method: Composition-based stats. Identities = 22/179 (12%), Positives = 48/179 (26%), Gaps = 30/179 (16%) Query: 10 AKQAIHNGFKLIPLRLGDKRP-------------------------QRLGKWEEQLLSSE 44 A + G+ + L KRP + ++ Sbjct: 11 ALDYVARGWPVFML-GRTKRPVANCPDCATTTAGHDREACPCLTCHGFYAATTDPDRAAA 69 Query: 45 KIDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILI 104 + +P G + D+D + + L + + + Sbjct: 70 IVRAVPTGQLALRTGAAS-GVVVVDVDPAHGGRDSMNALIADGLLPPTAYVVTGSGGLHL 128 Query: 105 PFRMNKEGI--KKKKTTESTQGHLDILGCGQYFVAYNI-HPKTKKEYTWTTPPHRFKVE 160 +R + + + K + +D+ G Y V HP+T + Y W ++ Sbjct: 129 YYRHPGQPVPCSQGKPGQGLGPGIDVKADGGYVVLPPSVHPRTGRAYRWAPDRAMEEMP 187 >gi|238063625|ref|ZP_04608334.1| bifunctional DNA primase/polymerase [Micromonospora sp. ATCC 39149] gi|237885436|gb|EEP74264.1| bifunctional DNA primase/polymerase [Micromonospora sp. ATCC 39149] Length = 291 Score = 76.8 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 19/128 (14%), Positives = 36/128 (28%), Gaps = 9/128 (7%) Query: 46 IDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIP 105 ID +P G D+D + + E L + + + Sbjct: 68 IDAVPRGQLALRTGAAS-GTVVVDVDPRHGGHHSMAALITEGLLPRTRYAVTGSNGLHLY 126 Query: 106 FRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNI-HPKTKKEYTWTTPPHRFKVEDTPL 164 +R + + +DI G Y V H +T + Y W D Sbjct: 127 YRHPGTSVISRPMPGRY--GIDIKADGGYVVLPPSRHQRTGRPYRWADGE-----HDLTE 179 Query: 165 LSEEDVEY 172 ++ ++ Sbjct: 180 MAPALLDA 187 >gi|251793969|ref|YP_003008701.1| phage DNA primase [Aggregatibacter aphrophilus NJ8700] gi|247535368|gb|ACS98614.1| phage DNA primase [Aggregatibacter aphrophilus NJ8700] Length = 239 Score = 76.8 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 33/245 (13%), Positives = 76/245 (31%), Gaps = 22/245 (8%) Query: 557 MGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV 616 M +++ E + + +K ++ GD + + + + IV N+ Sbjct: 1 MNKTLILCPEQSRYGG-DGGGLKSISTGDLVNIDPKHKSKFKAIIP-AIVLIVNNEPTRF 58 Query: 617 RNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD 674 + RR ++ FDK + + R+ K+E ++ K + + Sbjct: 59 TERNGGIERRRVIFHFDKVVQESKREPHLMDKIE-AEAGGIIYKLIQAFKNPLDAKKALI 117 Query: 675 IPEVCLKAKEEERQGTDTYQAWIDDCCDIGE-------NLWE--ESHSLAKSYSEYREQE 725 + +A E + +D + E N L +Y + E Sbjct: 118 QQQESAEALEI-KMNSDHLAVFCSYFLTSQESNGLGIGNAKTGLPRTHLYPAYLVFTEAN 176 Query: 726 LNYDRKRISTRTVTLNLK----QKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDN 781 + ++ + L+ Q R++I + R I + K F+ + Sbjct: 177 --NIQNALTLNNFSEALRQGLAQHKNKYPYARKRITSGMEKGRYITNVHFK-DFDEFYNE 233 Query: 782 SNIID 786 + Sbjct: 234 YIKSN 238 >gi|239916596|ref|YP_002956154.1| hypothetical protein Mlut_00280 [Micrococcus luteus NCTC 2665] gi|281414938|ref|ZP_06246680.1| hypothetical protein MlutN2_07018 [Micrococcus luteus NCTC 2665] gi|239837803|gb|ACS29600.1| Hypothetical protein Mlut_00280 [Micrococcus luteus NCTC 2665] Length = 314 Score = 76.8 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 15/131 (11%), Positives = 37/131 (28%), Gaps = 10/131 (7%) Query: 17 GFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKL----PACGFGFVCGVGEQPLYAFDIDS 72 G + P G KRP + + +++ P G + D+D Sbjct: 32 GVPVFPCVPGGKRPLTEHGFHDATTDPGQVEAWWRTHPDANLAVPTGAAS-GMVVVDVDV 90 Query: 73 KDEKTANTFKDTFEI---LHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDIL 129 + + G + + + + +++ ++ + +D Sbjct: 91 HAPTDGYEAFERAHRAGLVSGWAFLVSTPSGGMHAYY--PATPDRAQRSWQAARAGVDFR 148 Query: 130 GCGQYFVAYNI 140 G G Y + Sbjct: 149 GGGGYILLPPS 159 >gi|119869598|ref|YP_939550.1| hypothetical protein Mkms_3566 [Mycobacterium sp. KMS] gi|119695687|gb|ABL92760.1| conserved hypothetical protein [Mycobacterium sp. KMS] Length = 717 Score = 76.8 bits (187), Expect = 1e-11, Method: Composition-based stats. Identities = 33/235 (14%), Positives = 72/235 (30%), Gaps = 26/235 (11%) Query: 17 GFK-LIPLRLGDK--RPQRLGKWEEQLLSSEKIDKL----PACGFGFVCGVGEQPLYAFD 69 G++ +IP+ DK P + ++ E + P G + D Sbjct: 42 GWRGVIPVDPRDKGGVPAGFTGYGGIDVTPENMAWFAKSKPGHNIGLRL---PDGVIGID 98 Query: 70 IDSKDEK-TANTFKDTFEILHGTPI--VRIGQKPK--ILIPFRMNKEGI--KKKKTTEST 122 +D+ K A+TF + P + + +R+ + + Sbjct: 99 VDAYGPKKGADTFAEAQGRWGALPPSYRSTSRDDGISGIRLYRVPAGTKLETIIEFKDLD 158 Query: 123 QGHLDILG-CGQYF-VAYNIHPKTKKEYTWTTPPH------RFKVEDTPLLSEEDVEYL- 173 ++I+ ++ +IH KT + Y W + +D P L V L Sbjct: 159 IRDIEIVQRHHRHVQCWPSIHDKTGQRYRWVSELDGSAMDTPPAPDDLPNLPAAWVAALR 218 Query: 174 FKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDE 228 + T + + + + + + A C+G ++ + Sbjct: 219 AESGSNGTPLNGAEAPVDVQTALTEGDASPRVAELLARAIGDCYGGSRFDHTRGN 273 >gi|331694991|ref|YP_004331230.1| Bifunctional DNA primase/polymerase [Pseudonocardia dioxanivorans CB1190] gi|326949680|gb|AEA23377.1| Bifunctional DNA primase/polymerase [Pseudonocardia dioxanivorans CB1190] Length = 315 Score = 76.5 bits (186), Expect = 2e-11, Method: Composition-based stats. Identities = 26/180 (14%), Positives = 38/180 (21%), Gaps = 39/180 (21%) Query: 16 NGFKLIPLRLGDKRPQRLG-----------------KWEEQLLSS-----EKIDKLPACG 53 G+ + PL KRP G WE++ + A Sbjct: 21 RGWPVFPLHPATKRPALHGHAHCPRTGPCAGADGHLGWEQRATTDPDRIHTAWAAGRAFN 80 Query: 54 FGFVCGVGEQPLYAFDIDS----------KDEKTANTFKDTFEILHGTPIVRIG---QKP 100 G G L D D+ G Sbjct: 81 IGLATGPA--GLVVIDCDTDTDGAPRAQWAGAGGGLDVLHRLADQAGALPATFTVATPSG 138 Query: 101 KILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVE 160 +R + + T +D G Y VA YT T ++ Sbjct: 139 GTHFYYRAPA-CDELRNTAGLLGWKIDSRAHGGYVVAAGSTTPAG-AYTITDARDPVELP 196 >gi|145354411|ref|XP_001421479.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144581716|gb|ABO99772.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 689 Score = 76.5 bits (186), Expect = 2e-11, Method: Composition-based stats. Identities = 90/742 (12%), Positives = 191/742 (25%), Gaps = 113/742 (15%) Query: 54 FGFVCGVGEQPLYAFDIDSKDEKTANTFKDTF---EILHGTPIVRIGQKPKILIPFRMNK 110 +G + G + D D K + ++ + + F ++ Sbjct: 2 YGVLTGRP-NRVLVIDWDCYGGKCEFELTEEMLTRKVGGEGAYIVKTRSGGYHTYFAWDE 60 Query: 111 EGIKKKKTTESTQGHLDILGCGQYFV---AYNIHPKTKKEYTWTTPPHRFKVEDTPLLSE 167 E K T +G +DI G Y V A Y + + P + Sbjct: 61 ERFGDWKGTVGIEGFVDIRTTGNYVVGADAPG--------YELLRG----DINNLPPMPN 108 Query: 168 EDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHD 227 + +L + +T +T L G + Sbjct: 109 DLYSFLDGKVGHKVERADTECS---------------FTQASVTPLLEEMGFTGIH---- 149 Query: 228 EWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTF 287 W+ + E + + E N + F E+G Sbjct: 150 -WLSGATSYDFECDQCRPQRGTTVGQCPCCGGFHEGNGRGGGNHFYVAEVGLGV------ 202 Query: 288 TSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLT 347 +HG P+ ++ G + K + + + Sbjct: 203 -LTVKNHGNCKPRQF---------------RFEVGCLVTGITEKEQNEIKEGTSAGYIEV 246 Query: 348 LDKITASIMNFLVS---MKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKS 404 + + L + + + + ++ + R+ + V K Sbjct: 247 RREFEKHVAKILTKDLFCDDSCYGTTGDITKYSEAALVRRYRELSFVDENGVLRKGKKNG 306 Query: 405 TAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGE 464 + + + LD + + +L G V+ + + Sbjct: 307 FIEKWLDDDNKRVYDN-LDVVPK--NCSNKTYNLWRGYPVEG---------IPSELGKEG 354 Query: 465 PSQEFLDLVSGYFE-SEEVMDYFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLMNLIK 522 + FL+L+ SE ++Y + K + RGV G+GK T ++L+ Sbjct: 355 DVKPFLELLLVLCGGSENALEYASNWFACLFQRPEEKPITSLVFRGVQGTGKGTFLHLLH 414 Query: 523 YAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMT 582 G + + + ++I + + ++ +K M Sbjct: 415 ALMGK-------TFHETADPKKDIFGTHANMIEGK-KCLALNEADECIMKMYRKLLKSML 466 Query: 583 GGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVI-PFDKPIANRDA 641 T + Y F + + D RR++V+ P + ++ Sbjct: 467 TDTSFTINPKHVQLYVIMNLVGFLFFSNDDYPVFLEMSD---RRFVVMEPLLTHLNDQTG 523 Query: 642 SFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLK--AKEEE----RQGTDTYQA 695 + E + GLD+ + + R + Sbjct: 524 FLKEFREVYIRDPRNLRAIYDHLM----GLDLSTFDYVKDRPTTDAYSEMKRGCMPKFTR 579 Query: 696 WIDDCCDIG-ENLWE----ESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGG 750 W + C + W + + Y + R + S V LK F Sbjct: 580 WFEHCVTVEFPEKWVGNKIRNSDIFIEYQTWLPA---AARGQDSATKVGNKLKD--FFKK 634 Query: 751 IKREKIEK---EWKSKRIIKGL 769 K ++ + R KG+ Sbjct: 635 EKGHRVPMQEDHLRQGRDEKGV 656 >gi|194430133|ref|ZP_03062636.1| replication protein [Escherichia coli B171] gi|194411843|gb|EDX28162.1| replication protein [Escherichia coli B171] gi|323159199|gb|EFZ45189.1| virulence-associated protein E family protein [Escherichia coli E128010] Length = 642 Score = 76.5 bits (186), Expect = 2e-11, Method: Composition-based stats. Identities = 80/593 (13%), Positives = 145/593 (24%), Gaps = 116/593 (19%) Query: 63 QPLYAFDIDSKDEKTANTFKDTFEILHG--TPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120 A D DS+DE + T L G P K L ++ + K+ Sbjct: 5 HGWLALDCDSEDEDIQADIRKTLVQLLGELPPRRWRANSNKCLYLLAVDGDFCKRIHRLA 64 Query: 121 STQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEI 180 G +++L GQ FVA H + W ++ P ++ E +E L++ E Sbjct: 65 GDMGIIELLANGQQFVACGTH-SSGARIEWDGGL----PDEPPAITGEQLETLWQRLAEQ 119 Query: 181 TVPLVKDKKSIIPSKTWTNNNNRQYTN-REITAFLSCFGEEFYNGSHDEWIPVVMAVHHE 239 V + + + + E + NG +I H Sbjct: 120 LPVSVTTEAGNTKMRDRSAFTPGATDDTAEYLDANGWTLLDGANGER--YIRCPFEDGHS 177 Query: 240 TRGSSK----------GKE--IARRWSKQGSTYDEENFNYKW----DTFD--FEEIGDTA 281 + G G E + + D+ +F D F+ Sbjct: 178 SGGDPTSTAYFPAGTAGFEQGHFKCLHASCAHRDDGDFLNAIGIRNDDFEDLTSTEVAEP 237 Query: 282 KKRSTFTSLFYHHGKLIPKGLLAS--RFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKN 339 F + + + R F ++ +A + W Sbjct: 238 LPLPAFERDKWGRIEATISNAAKAVVRPDFVDIDIRFDQFRDEIMFASAGSGQWRAFTD- 296 Query: 340 NVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEEN 399 +IT F +E + D+ D Sbjct: 297 ----ADYARLRITMEKRGFKPVGRELIRDVVLLAAD------------------------ 328 Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTP 459 + +I + D R + TP Sbjct: 329 -------EQPFDSAITWLNGLEWDGVPRIECF-----------------YHTHFGTADTP 364 Query: 460 FVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMN 519 + + G L G KA + G G GKS+ + Sbjct: 365 YTRAVSMYMWT-----------------ALAGRVLEPGIKADMVPILVGPQGCGKSSGVE 407 Query: 520 LIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIR-LMGSRIVIISETNENDEINAAKI 578 + + + + + E L R + G + I E + I Sbjct: 408 AL----------SPDPAFFTEISFAEKDD---DLARKMRGRLVAEIGELRGLNTKELESI 454 Query: 579 KQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIP 631 K Y ++ P N+ F+ + RR++ + Sbjct: 455 KAFVTRTHENWIPKYREFATQFPRRLVFVGTTNEDEFLADKTG--NRRWLPVE 505 >gi|29566306|ref|NP_817873.1| gp22 [Mycobacterium phage Corndog] gi|29425031|gb|AAN01954.1| gp22 [Mycobacterium phage Corndog] Length = 786 Score = 76.5 bits (186), Expect = 2e-11, Method: Composition-based stats. Identities = 31/185 (16%), Positives = 63/185 (34%), Gaps = 17/185 (9%) Query: 6 WKEQAKQAIHNGFK-LIPLRLGDKRPQRLG--KWEEQLLSSEKIDKLPA-CGFGFVCGVG 61 + + A+ G++ ++PL+ K P G ++ + S I + G +C Sbjct: 9 YGDAAQVYWDKGWRGVLPLKRETKWPPPSGFTGYDGAVPSYPDILQWSELYPDGNLCLRL 68 Query: 62 EQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPK------ILIPFRMNKEGI-- 113 + D+D+ KT E G + L FR+ + Sbjct: 69 PDGVVGIDVDAYGAKTGAAALAEAERRWGPLPDGPQSTSRLDDPVSGLRLFRVPPGTLLE 128 Query: 114 KKKKTTESTQGHLDILG-CGQYFVAYNIHPKTKKEYTWTTPPHRF----KVEDTPLLSEE 168 E + G ++++ +Y V + + Y W + +++D P L Sbjct: 129 TIIVFRELSIGDIEVIQPHHRYAVCWPSIHPEGRAYWWRNSQGQTIGIPELDDIPELPPS 188 Query: 169 DVEYL 173 +E L Sbjct: 189 WLEGL 193 >gi|108800482|ref|YP_640679.1| hypothetical protein Mmcs_3516 [Mycobacterium sp. MCS] gi|119869621|ref|YP_939573.1| hypothetical protein Mkms_3589 [Mycobacterium sp. KMS] gi|108770901|gb|ABG09623.1| hypothetical protein Mmcs_3516 [Mycobacterium sp. MCS] gi|119695710|gb|ABL92783.1| conserved hypothetical protein [Mycobacterium sp. KMS] Length = 718 Score = 76.5 bits (186), Expect = 2e-11, Method: Composition-based stats. Identities = 31/226 (13%), Positives = 70/226 (30%), Gaps = 20/226 (8%) Query: 17 GFK-LIPLRLGDK--RPQRLGKWEEQLLSSEKIDKL----PACGFGFVCGVGEQPLYAFD 69 G++ +IP+ DK P + ++ E + P G + D Sbjct: 42 GWRGVIPVDPRDKGGIPAGFTGYGGIDVTPENMAWFAKSKPGHNIGLRL---PDGVIGID 98 Query: 70 IDSKDEK-TANTFKDTFEILHGTPI--VRIGQKPK--ILIPFRMNKEGI--KKKKTTEST 122 +D+ K A+TF + P + + +R+ + + Sbjct: 99 VDAYGPKKGADTFAEAQGRWGALPPSYRSTSRDDGISGIRLYRVPAGTKLETIIEFKDLD 158 Query: 123 QGHLDILG-CGQYF-VAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEI 180 ++I+ ++ +IH KT + Y W + V DTP E+ + + + Sbjct: 159 IRDIEIVQRHHRHVQCWPSIHDKTGQRYRWVSELDGS-VMDTPPAPEDLPDLPAAWVAAL 217 Query: 181 TVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSH 226 V + + + T + + ++ + Sbjct: 218 RVEESGSNGTPLNGAEAPVDVQTALTEGDASPRVAELLARAIGDCY 263 >gi|218884436|ref|YP_002428818.1| primase [Desulfurococcus kamchatkensis 1221n] gi|218766052|gb|ACL11451.1| primase [Desulfurococcus kamchatkensis 1221n] Length = 598 Score = 76.1 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 53/409 (12%), Positives = 118/409 (28%), Gaps = 73/409 (17%) Query: 425 SSRFLGEQDGILDLETG--------QKVKPTKELYITKSTGTP---------------FV 461 F+ ++ + D P E+ + P ++ Sbjct: 192 DYNFIVFENKLFDWRVFLKTENLVEAVKDPDPEIVVMHRIPNPIDLDAWRAVRPGLQQYI 251 Query: 462 EGEPSQEFLDLVSGYFE-------------------SEEVMDYFTRCVGMALLGGN---- 498 + + + L+ E + + + VG +L G Sbjct: 252 PPKNCSDLVALLRQLAPATYSYLYSLAYVAGASQDFIESRICFLVQMVGRMMLPGYRVNG 311 Query: 499 ----KAQRFIHIRGVGGSGKSTLMNLIKY--AFGNQYVINAEASDIMQNRPPEAGKANPS 552 K + + G +GKST + G + + + + P + + Sbjct: 312 VIVEKLKNVFALLGKTNTGKSTFLQDYTGDVVLGKENYRITDLARLTSLDPEDRLR---E 368 Query: 553 LIRLMGSRIVIISETNENDEINA-AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPN 611 L G+ +VI + ++ + I+ ++GGD + AR Y ++Y E SF I N Sbjct: 369 FHDLRGTLMVIHPDIGRKSRVSDWSIIRDVSGGDRIKARGLYKDSY-EYYPSFKIAISSN 427 Query: 612 KHLFVRNPDDAWW---RRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYIS 668 + +A +R+ V + + + A +L G + Sbjct: 428 DPPPIGEEGEALKALLQRFKVFETWNTFTGK--TLDIEPLEAEVSRAVIAYLYGAYLVLK 485 Query: 669 KGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIG---ENLWEESHSLAKSYSEYREQE 725 G ++ + ++ +I + + G + L S++ + Sbjct: 486 AGW---ACTGVSDIEDAWLRYSEPIYRYIIEMIERGVLVRGGEINTGDLYSLLSKFIKCR 542 Query: 726 LNYDRKRISTRTVTLN-----LKQKGFIGGIKREKIEKEWKSKRIIKGL 769 + + + +K K K + +I GL Sbjct: 543 SRESEEEDYEEEGSALPPQDVVTKKLKKWSAKLGIAVKHKERGNVIIGL 591 >gi|158421602|ref|YP_001527829.1| bifunctional DNA primase/polymerase [Deinococcus geothermalis DSM 11300] gi|158342845|gb|ABW35131.1| Bifunctional DNA primase/polymerase [Deinococcus geothermalis DSM 11300] Length = 402 Score = 76.1 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 40/287 (13%), Positives = 80/287 (27%), Gaps = 21/287 (7%) Query: 7 KEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPA---CGFGFVCGVGEQ 63 + + I G K +K ++ + E++ G G V G Sbjct: 32 RPHGQALISTGHKTSGTDGREK--GAWQALQQTPATREEVLTWLRPGWRGLGLVTGSVS- 88 Query: 64 PLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMN--KEGIKKKKTTES 121 + D+D + F + L G VR + + R + +T + Sbjct: 89 GIVVIDVDQSEGV--ARFTEWG--LLGRAHVRT-RSGGLHWYLRHPGWPVRTVQSQTNKR 143 Query: 122 TQG--HLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQE 179 + +D+ G G Y V P + D P L +V+ L Sbjct: 144 LEWIRGIDVRGDGGYVVIPPTRFGRVGY----EPLRDHRDLDDPSLLPFEVQVLLGLHAA 199 Query: 180 ITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHE 239 + P + S P+ + + ++E+ + + + Sbjct: 200 PSAPGPRAAVSPAPASGPWVARDGRTLDQELLYRALELAHTGGRRNESGFWLACQLRDNG 259 Query: 240 TRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRST 286 R + + R S+ +T + TF+ R Sbjct: 260 FREGDAEEVLRRYVSQVPATNSKGERED--YTFEEARHSLGQAYRRE 304 >gi|297566004|ref|YP_003684976.1| Bifunctional DNA primase/polymerase [Meiothermus silvanus DSM 9946] gi|296850453|gb|ADH63468.1| Bifunctional DNA primase/polymerase [Meiothermus silvanus DSM 9946] Length = 1006 Score = 76.1 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 26/148 (17%), Positives = 48/148 (32%), Gaps = 13/148 (8%) Query: 10 AKQAIHNGFKLIPLRLGDKRPQR---LGKWEEQLLSSEKIDKL----PACGFGFVCGVGE 62 A + G+ ++PL G+KRP + E + + P G G + Sbjct: 13 ALEYAGMGYPVLPLLPGEKRPHGRLVPSGLRDASTDPEVLRRWWQAAPGAGVGIL---PP 69 Query: 63 QPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTEST 122 A D D A + L P R + + + R+ + ++ Sbjct: 70 AETLALDCDVPSAWGA--LLAEYPELGEAPRQRTPR-GGVHVFLRLPAGLVGSLTSSARK 126 Query: 123 QGHLDILGCGQYFVAYNIHPKTKKEYTW 150 +D+ G G+ ++A Y W Sbjct: 127 LPGVDLRGLGKAYLAAAPTTLPNGAYVW 154 >gi|33864892|ref|NP_896451.1| hypothetical protein SYNW0356 [Synechococcus sp. WH 8102] gi|33638576|emb|CAE06871.1| conserved hypothetical protein [Synechococcus sp. WH 8102] Length = 656 Score = 76.1 bits (185), Expect = 2e-11, Method: Composition-based stats. Identities = 39/236 (16%), Positives = 74/236 (31%), Gaps = 19/236 (8%) Query: 2 PVMQWKEQAKQAIHNGFKLIPLRLGDKRPQRLG--------KWEEQLLSSEKIDKLPAC- 52 PV W+++ + G LIP G+K + W+ + ++I + Sbjct: 3 PVSNWRQKLLPQLT-GLPLIPCGAGEKFKAPIDPSTGFGAKGWQHMSFTPDEIAAMGPKV 61 Query: 53 -GFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIV-RIGQKPKILIPFRMNK 110 G G + FDID + + E T +V R + + FR+ K Sbjct: 62 LCVGTRLGPDAGGIVCFDIDGLSA-ISELIRMGIEHQPVTWMVGRNTDSNRYKLFFRVPK 120 Query: 111 EGIKKKKTT----ESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLS 166 E + ++I + H ++ EY WT + ++ P Sbjct: 121 ERWEHLPGKCEVKADGNEKVEIFWSTGQCIVAGEHRQSGGEYVWT-QRNPERIAPIPDDW 179 Query: 167 EED-VEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEF 221 + + K + V D IP + + L +G+ + Sbjct: 180 WALWQKAMAKTENRRSHKQVGDWHDAIPCPICGRTEPDCRQSADGKVILCHYGKRW 235 >gi|291297141|ref|YP_003508539.1| Bifunctional DNA primase/polymerase [Meiothermus ruber DSM 1279] gi|290472100|gb|ADD29519.1| Bifunctional DNA primase/polymerase [Meiothermus ruber DSM 1279] Length = 1002 Score = 76.1 bits (185), Expect = 3e-11, Method: Composition-based stats. Identities = 29/151 (19%), Positives = 51/151 (33%), Gaps = 15/151 (9%) Query: 8 EQAKQAIHNGFKLIPLRLGDKRPQR---LGKWEEQLLSSEKIDKL----PACGFGFVCGV 60 + A + G+ ++PL G+KRP E + + P G G + Sbjct: 6 QAALEYARLGYAVLPLLPGEKRPHSRLAPNGLTNATPDPEVLRRWWQAVPTAGVGIL--- 62 Query: 61 GEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120 + + D D + + + L P R + + + ++ K I TT Sbjct: 63 PPEQVLVLDFD--APEVWEQLRAEYPELATAPRQRSPR-GGVHVFLKLPKSLIGSLTTTA 119 Query: 121 STQGHLDILGCGQ-YFVAYNIHPKTKKEYTW 150 LD+ G G+ Y A Y+W Sbjct: 120 RKMPGLDLRGLGKAYLAAAPTELPNGG-YSW 149 >gi|187251854|ref|YP_001876336.1| bifunctional DNA primase/polymerase [Elusimicrobium minutum Pei191] gi|186972014|gb|ACC98999.1| Bifunctional DNA primase/polymerase [Elusimicrobium minutum Pei191] Length = 255 Score = 76.1 bits (185), Expect = 3e-11, Method: Composition-based stats. Identities = 29/230 (12%), Positives = 67/230 (29%), Gaps = 36/230 (15%) Query: 14 IHNGFKLIPLR-LGDKR--------------PQRLGKWEEQLLSSEKIDKL-----PACG 53 + GFK+ P+ +K+ P G + + +I +C Sbjct: 14 LRRGFKVFPVWYPKEKKCACFNASCNCPAKHPMFKGGHKIASSNISQIKNWTTSIKESCN 73 Query: 54 FGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGI 113 + G + DID + + + L T V G F++ + Sbjct: 74 WAVATGKPSN-IVVVDIDFRKDGDKSIAP---YNLPSTYTVSTGN--GFHYYFKLPMQY- 126 Query: 114 KKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYL 173 + + + +D G Y + + Y + + D P +E + Sbjct: 127 QYLASKINLLQGVDFKANGGYVIIPPSIHISGAAYK---MHNDITIADIP---ANLLEVI 180 Query: 174 FKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNRE-ITAFLSCFGEEFY 222 + + +++ + + + +T +LS E+ Sbjct: 181 LRQVKNNIFREG--ERNSQLFRIGVGFAYNRSKEKSRLTKYLSVVNEDRC 228 >gi|224178113|ref|YP_002600956.1| putative phage associated DNA primase [Pyramimonas parkeae] gi|224178119|ref|YP_002600974.1| putative phage associated DNA primase [Pyramimonas parkeae] gi|215882780|gb|ACJ71153.1| putative phage associated DNA primase [Pyramimonas parkeae] gi|215882786|gb|ACJ71159.1| putative phage associated DNA primase [Pyramimonas parkeae] Length = 454 Score = 75.7 bits (184), Expect = 3e-11, Method: Composition-based stats. Identities = 45/374 (12%), Positives = 108/374 (28%), Gaps = 42/374 (11%) Query: 430 GEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRC 489 +D + ++L + T + ++ + S+ + +F + Sbjct: 16 NFPIEFIDPLDREMYLHRRKLNLKTITD---GKNIDLEKLQKELQKIALSDWLQGFF-KT 71 Query: 490 VGM---------ALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540 + + R I G ++ + A G +++ Sbjct: 72 LTYNLAEQSPLNIFILRTFMNRIIFAAKEGHFYQTITWLSGRSATGKSSIVSICKFLSEG 131 Query: 541 NRPPEAGKAN-PSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599 + +N + L+G ++++I++ ++ ++ + G D ++ N Sbjct: 132 SYLELGKDSNQFTASALVGKKLLLITDPSKITPNQIDILRTVAGRDTLSYENKNMNGTYT 191 Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWR----RYIVIPFDKPIANRDASFAQKLETKYTLEA 655 IV N++ + W+ R +I + + S + + Sbjct: 192 FVPYCQILIVTNRNPRDYDN---IWQLEELRTKIIDIEYLHPLPEVSNFNQYLESFKDHF 248 Query: 656 KKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQ---GTDTYQAWIDDCCDI--------G 704 W + Y+ L + + ++I+DC I Sbjct: 249 HVWATFCPREYL---LQTTRSQAIQNTRSSNEHVSTEISPLHSFIEDCIYICDPAYECNE 305 Query: 705 ENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGF-------IGGIKREKIE 757 + L+ L +Y + E++ S R Q I + + E Sbjct: 306 KELFVTKKDLLIAYENWIEKQGQEASFDGSARKFFQKNIQNALLTTYNIAIKNYRPKVTE 365 Query: 758 KEWKSKRIIKGLKL 771 K KG+KL Sbjct: 366 KNEVRPLAWKGIKL 379 >gi|134097719|ref|YP_001103380.1| hypothetical protein SACE_1124 [Saccharopolyspora erythraea NRRL 2338] gi|291006321|ref|ZP_06564294.1| hypothetical protein SeryN2_17535 [Saccharopolyspora erythraea NRRL 2338] gi|133910342|emb|CAM00455.1| hypothetical protein SACE_1124 [Saccharopolyspora erythraea NRRL 2338] Length = 314 Score = 75.7 bits (184), Expect = 3e-11, Method: Composition-based stats. Identities = 33/260 (12%), Positives = 55/260 (21%), Gaps = 48/260 (18%) Query: 16 NGFKLIPLRLGDKRPQRLG---------------KWEEQLLSSEKIDK--L--PACGFGF 56 G+ + PL+ G P G KWE++ K + A G Sbjct: 17 RGWPVFPLKPGGSFPALHGVDDCPRTGVCADGHLKWEQRATIYAKRIRACWTHDAYNIGL 76 Query: 57 VCGVGEQPLYAFDIDSKDEK--------------TANTFKDTFEILHGTPIVRI----GQ 98 G L D D + F P + Sbjct: 77 ATGPA--GLLVVDFDVPKPGKPVPDRWAAQGVESGMDVFLLLCAEAGQAPPLETFTVATP 134 Query: 99 KPKILIPFRMNKEGIKKKKT--TESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHR 156 + F + + + +D G G Y VA + YT T Sbjct: 135 SGGTHLYFTVPADAGLRITQGERNGLGWGIDTRGHGGYVVAPGSI-RRDGTYTITHDRPL 193 Query: 157 FKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSC 216 + +E L P S + + Sbjct: 194 MPL------PGWLIERLRPQELPPQQPTPVATISGRRAGFLRAAIEGEVRRVTSADGGQR 247 Query: 217 FGEEFYNGSHDEWIPVVMAV 236 + + + A+ Sbjct: 248 NFALYCAATALGQLVAGGAL 267 >gi|281357235|ref|ZP_06243724.1| Bifunctional DNA primase/polymerase [Victivallis vadensis ATCC BAA-548] gi|281316266|gb|EFB00291.1| Bifunctional DNA primase/polymerase [Victivallis vadensis ATCC BAA-548] Length = 660 Score = 75.7 bits (184), Expect = 3e-11, Method: Composition-based stats. Identities = 27/220 (12%), Positives = 64/220 (29%), Gaps = 17/220 (7%) Query: 10 AKQAIHNGFKLIPLRLGDKRPQ--RLGKWEEQLLSSEKIDKLPA---CGFGFVCGVGEQP 64 A++ + ++P K P + W+E+L + +I A +CG Sbjct: 8 AEEYLAAKLSVLPAVREKKCPAVGKWKVWQERLPTDVEIRAWFANRHDAICLICGKISGN 67 Query: 65 LYAFDIDSKDEKTANTFKDTF-EILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQ 123 L D D+ + +K+ + L+ ++ +R + E K + + Sbjct: 68 LEILDFDN-HGELFPKWKELIPQELYEKLVIEQTPSGGFHAAYRCSDEICGNLKLAQGER 126 Query: 124 GH-----LDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQ 178 ++ G G F+ +P + ++ + + + Sbjct: 127 DGKLVTLIETRGNGGLFL---CYPTEGYTLKQAAFTSLQILSS--DERKQLFDAAYSLNE 181 Query: 179 EITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFG 218 + + + +I L C G Sbjct: 182 KTQGEAKEPPDITDSDLFEERPGDDFNERGDIRDLLICHG 221 >gi|74835168|dbj|BAE44469.1| hypothetical protein [Salmonella enterica subsp. enterica serovar Abortusequi] Length = 160 Score = 75.3 bits (183), Expect = 4e-11, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 45/130 (34%), Gaps = 13/130 (10%) Query: 523 YAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMT 582 G +A + R L+G ++ + E + A +K +T Sbjct: 1 MLAGEDNAASAPIETLESPR---------ERAALIGFSLIRLPEQEKWSGDGAG-LKAIT 50 Query: 583 GGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI--ANRD 640 GGD ++ Y + YS + + N + + RR +++ F + I RD Sbjct: 51 GGDALSVDPKYKDAYSTHIPAVILAV-NNNPMRFSDRSGGVSRRRVILHFPEQIAPKERD 109 Query: 641 ASFAQKLETK 650 K+ + Sbjct: 110 PQLKNKIARE 119 >gi|227542783|ref|ZP_03972832.1| conserved hypothetical protein [Corynebacterium glucuronolyticum ATCC 51866] gi|227181409|gb|EEI62381.1| conserved hypothetical protein [Corynebacterium glucuronolyticum ATCC 51866] Length = 259 Score = 75.3 bits (183), Expect = 4e-11, Method: Composition-based stats. Identities = 31/237 (13%), Positives = 64/237 (27%), Gaps = 17/237 (7%) Query: 9 QAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKL----PACGFGFVCGVGEQP 64 QA G +++PL K+P +I K P G Sbjct: 4 QALGYSEWGLEVVPLN--GKKPFSKPGLYAATTDPNQIIKWWTERPHANIGLRV---PAG 58 Query: 65 LYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQG 124 D+D ++ A+ + I + + F + G +T Sbjct: 59 CLVVDVDPRNGGIADYRRLFPNGSCPYTARTITGSGGLHLYFTLPYSG----ETNAHFGK 114 Query: 125 HLDILGCGQYFVAYNI-HPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVP 183 +D+ G + V HPKT + Y W E L E + +++K Sbjct: 115 GIDLQGRKRLTVLPPSIHPKTHRAYKWWPFL---PPEQWAPLPEWCLPHVYKVPDTKPKV 171 Query: 184 LVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHET 240 ++ + + + + + + + + + Sbjct: 172 PEHIRRHYMKQSKDPGAGLIRTVVEAQEGNRNHALNWAAWTAAKDGLDIKQELINAA 228 >gi|294817427|ref|ZP_06776069.1| Bifunctional DNA primase/polymerase [Streptomyces clavuligerus ATCC 27064] gi|294322242|gb|EFG04377.1| Bifunctional DNA primase/polymerase [Streptomyces clavuligerus ATCC 27064] Length = 374 Score = 75.3 bits (183), Expect = 4e-11, Method: Composition-based stats. Identities = 39/269 (14%), Positives = 59/269 (21%), Gaps = 71/269 (26%) Query: 8 EQAKQAIHNGFKLIPLRLGDKRPQRL-----------------------GKWEEQLLSSE 44 E A G+ + PL G K P + Sbjct: 30 ETALWCAAQGWPVHPLAPGRKTPAPNCGDCRDRPHPPQECDCIPAGRWCHGFHAATTDPA 89 Query: 45 KIDKL----PACGFGFVCGVGEQPLYAFDIDSKDEKT----------------------- 77 I P G G CG L D+D+ Sbjct: 90 LITAWWTRQPRFGVGVACGPA--GLVVIDVDAHPAPLPTPDRLLPGIHIPESVCLDGLRH 147 Query: 78 ANTFKDTFEILHGTP---------IVRIGQKPKILIPFRMNKEGIKKKKTTESTQ---GH 125 L G P VR L + + + + Sbjct: 148 GFHSLAVLAALRGRPDPSQDESTLRVRTPSGGLHLWYTARPGQEWRCSTGSGVNRALAWQ 207 Query: 126 LDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLV 185 +D+ G Y +A + + YT P V L + L + P Sbjct: 208 VDVRAHGGYIIAPGTRTASGR-YTACGP-----VRRPAPLPDWLAAELERTGHRPVPPHP 261 Query: 186 KDKKSIIPSKTWTNNNNRQYTNREITAFL 214 + +PS+ W N + L Sbjct: 262 RTAT-PVPSRAWAAVNAARGGRDSAARVL 289 >gi|330970611|gb|EGH70677.1| bifunctional DNA primase/polymerase [Pseudomonas syringae pv. aceris str. M302273PT] Length = 823 Score = 74.9 bits (182), Expect = 4e-11, Method: Composition-based stats. Identities = 91/705 (12%), Positives = 189/705 (26%), Gaps = 112/705 (15%) Query: 105 PFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVE---- 160 +R + E K+ E G + Q + +IHP T + YTW TPP + Sbjct: 89 LYRADAEQYKRFTVFELRAGLV------QDVLPPSIHPGTGQPYTWRTPPDASGLPVLIS 142 Query: 161 DTPLLS------EEDVEYLFKFFQEITVPLVKDKKSIIPS------KTWTNNNNRQYTNR 208 D + + E + + P K K P+ + + N + Sbjct: 143 DLLNVWNNWDVFKRGAEAACPWLPKDAKPTGKQKPKPKPALVGGRRPSVIDEFNNCHDVE 202 Query: 209 EITA------------------------------FLSCFGEEFYNGSHDEWIPVVMAVHH 238 EI + + NG ++ V + H Sbjct: 203 EILRSHGYTKRGGKWLYPQSSTGLPGITVAEGKVYSHHAADPLANGHQNDAFEVFCLLEH 262 Query: 239 ETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFY--HHGK 296 S KE AR Q + + S + Sbjct: 263 GGDQSKAVKEAARMLGMQSTRPSASDLPPAPTEGSDTPDAAAPDAPSEAAPAPDGGAGEE 322 Query: 297 LIPKGLLASR---------FSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLT 347 L + +L + ++AM + K W + Sbjct: 323 LTIEQVLRRFALVEGTTHVWDFDKSRAMKKSAFEARV-GKPIAKLWLDATDKKLIADEQV 381 Query: 348 LD----KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAK 403 D + A + M+ + + + + + R + + + Sbjct: 382 KDIEQARKMAGKKGGALGMRPTERYVYIDGTKDVWDREKKRRIAEGAVKMALGDTYALWL 441 Query: 404 STAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEG 463 ++++ + + ++ G ++P + Sbjct: 442 NSSERRVVDVEHIVFDPTMTKDPSIY------INTFDGLPLEPVNDDA----------AC 485 Query: 464 EPSQEFLDLVSGYFESEEVMDYFTRCVGMAL--LGGNKAQRFIHIRGVGGSGKS-TLMNL 520 + + + E + TR + L LG + + GSGKS + Sbjct: 486 ANLRWLISFLCN--HDEAAALWLTRWLAYPLQHLGAKMDTAVLMHSTMEGSGKSLLFADT 543 Query: 521 IKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEIN-AAKIK 579 +G + ++N + + V + + N KIK Sbjct: 544 FGALYGQYAATVGQTQL----------ESNFNAWQSRKMWAVFEEVVSRDQRYNQVGKIK 593 Query: 580 QMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHL-FVRNPDDAWWRRYIVI-PFDKPIA 637 + G + + N + E+ F+ + + D RR +V+ P + Sbjct: 594 HLVTGKTVRMESKFINGWEEANHMNAVFLSNEILPWPISDSD----RRMLVMWPMETLPV 649 Query: 638 NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWI 697 R + ++LE W L+ ++ + R G T+ ++ Sbjct: 650 ARQKAIGRELENGGVAALYGWLLRVDLGDFNERTRPPSTASRERLVALSRAGWQTF-LYL 708 Query: 698 DDCCDIGENLW--EESHSLAKSYSEYREQELNYDRKRISTRTVTL 740 ++G LW S L + E+ ++ +S +L Sbjct: 709 WRYGELGRGLWGVCLSTDLYALFLEWCQRNKE---HVMSQTKFSL 750 >gi|220915145|ref|YP_002490449.1| ATPase-like protein [Anaeromyxobacter dehalogenans 2CP-1] gi|219952999|gb|ACL63383.1| ATPase-like protein [Anaeromyxobacter dehalogenans 2CP-1] Length = 548 Score = 74.9 bits (182), Expect = 5e-11, Method: Composition-based stats. Identities = 31/237 (13%), Positives = 73/237 (30%), Gaps = 15/237 (6%) Query: 449 ELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRG 508 + + P + + ++ + E M + N++++++ +RG Sbjct: 248 DDRVCFKRFDWKPAEAPFPAWEEFLTRLSDREAFMAFVW----SCFEKKNRSRQYLWLRG 303 Query: 509 VGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN 568 G GKS ++ ++ FG + N+ L G R+VI + Sbjct: 304 EGQDGKSKVLGVLLEVFGPAGAAINNSHVEKGNQ--------FFFSALYGKRLVIYPDCK 355 Query: 569 ENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYI 628 ++ T GD + ++ F+ N + A R I Sbjct: 356 NAKFGMKEIVRNCTSGDPVAVEFKGETPFTTVL-RIRLFVASNTKPEFTSQ-AADRSRII 413 Query: 629 VIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEE 685 + + + D ++ ++L + + D+ + E +E Sbjct: 414 YVEVAESASKDDPTWEERL-KAQLPGFLWSCKATYERVCAHHGDIPVSEQTKAMLDE 469 >gi|251793968|ref|YP_003008700.1| bacteriophage P4 DNA primase [Aggregatibacter aphrophilus NJ8700] gi|247535367|gb|ACS98613.1| bacteriophage P4 DNA primase [Aggregatibacter aphrophilus NJ8700] Length = 130 Score = 74.9 bits (182), Expect = 5e-11, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 44/124 (35%), Gaps = 2/124 (1%) Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPS-QEFLDLVSGYF-ESE 480 + S L ++G+L+ T + +E ++T + + F ++ E Sbjct: 3 EQSKELLAFKNGVLNRSTLEFSPHCRENWLTSFIPHNYTNQTENTPHFDSWLNFVADGKE 62 Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540 + + L + Q F + G GGSGKS + G Q + D+ + Sbjct: 63 DKKQAILSALYAILTNRHNWQLFFEVTGDGGSGKSVFAQIATMLAGEQNTESGRLVDLDE 122 Query: 541 NRPP 544 R Sbjct: 123 PRGR 126 >gi|69245155|ref|ZP_00603279.1| prophage Lp4 protein 7, DNA replication [Enterococcus faecium DO] gi|257879626|ref|ZP_05659279.1| prophage Lp4 protein 7 [Enterococcus faecium 1,230,933] gi|257890293|ref|ZP_05669946.1| prophage Lp4 protein 7 [Enterococcus faecium 1,231,410] gi|260559711|ref|ZP_05831891.1| prophage Lp4 protein 7 [Enterococcus faecium C68] gi|293560113|ref|ZP_06676617.1| prophage Lp4 protein 7, DNA replication [Enterococcus faecium E1162] gi|314938177|ref|ZP_07845482.1| DNA primase/polymerase [Enterococcus faecium TX0133a04] gi|314943779|ref|ZP_07850514.1| DNA primase/polymerase [Enterococcus faecium TX0133C] gi|314951148|ref|ZP_07854206.1| DNA primase/polymerase [Enterococcus faecium TX0133A] gi|314994614|ref|ZP_07859874.1| DNA primase/polymerase [Enterococcus faecium TX0133B] gi|314995576|ref|ZP_07860670.1| DNA primase/polymerase [Enterococcus faecium TX0133a01] gi|68195998|gb|EAN10431.1| prophage Lp4 protein 7, DNA replication [Enterococcus faecium DO] gi|257813854|gb|EEV42612.1| prophage Lp4 protein 7 [Enterococcus faecium 1,230,933] gi|257826653|gb|EEV53279.1| prophage Lp4 protein 7 [Enterococcus faecium 1,231,410] gi|260074379|gb|EEW62701.1| prophage Lp4 protein 7 [Enterococcus faecium C68] gi|291605980|gb|EFF35410.1| prophage Lp4 protein 7, DNA replication [Enterococcus faecium E1162] gi|313590164|gb|EFR69009.1| DNA primase/polymerase [Enterococcus faecium TX0133a01] gi|313591019|gb|EFR69864.1| DNA primase/polymerase [Enterococcus faecium TX0133B] gi|313596627|gb|EFR75472.1| DNA primase/polymerase [Enterococcus faecium TX0133A] gi|313597503|gb|EFR76348.1| DNA primase/polymerase [Enterococcus faecium TX0133C] gi|313642524|gb|EFS07104.1| DNA primase/polymerase [Enterococcus faecium TX0133a04] Length = 282 Score = 74.9 bits (182), Expect = 5e-11, Method: Composition-based stats. Identities = 36/297 (12%), Positives = 81/297 (27%), Gaps = 46/297 (15%) Query: 8 EQAKQAIHNGFKLIPLRLGDKRPQR-LGKWEEQLLSSEKIDKL----PACGFGFVCGVGE 62 + A + +G+ + PL G K P + W + S +I++ G + + Sbjct: 6 QAATELQKSGWSIYPLSPGTKIPIKGSSGWNDATNDSNQINEWWTEDATRNIGLML--ED 63 Query: 63 QPLYAFDID----SKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNK-------- 110 + D+D +++ + + I I F++ Sbjct: 64 HQMVVVDLDQHSETRNGVENYKKLASMYDPFPSTYTEITPGKGIHFFFKIPDGVIIQQET 123 Query: 111 EGIKKKKTTESTQ---GHLDILGCGQYFVAYNIHPKT-KKEYTWTTPPHRFKVEDTPLLS 166 + +DI+ G I ++ + Y P + + Sbjct: 124 GAFADIFGRDDKGKSLSGIDIITKGVPIAPTMIISRSVGRAYE---PIENVSLNNIAPAP 180 Query: 167 EEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSH 226 + V L K QEI K+ L + GS Sbjct: 181 DWLVNLLLKKPQEIKTQYRPVAKTGT------------------AKKLDMIVQGAGEGSR 222 Query: 227 DEWIP--VVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTA 281 ++ + + H + + I + ++ N + +++ A Sbjct: 223 NDHLTKLCGWLLWHGVDNQTLAELIYTANAYNEPPLKDKEVNQIIRSMIKKDLRGKA 279 >gi|240142756|ref|YP_002967269.1| hypothetical protein MexAM1_META2p1160 [Methylobacterium extorquens AM1] gi|240012703|gb|ACS43928.1| Hypothetical protein MexAM1_META2p1160 [Methylobacterium extorquens AM1] Length = 1370 Score = 74.9 bits (182), Expect = 5e-11, Method: Composition-based stats. Identities = 31/243 (12%), Positives = 74/243 (30%), Gaps = 23/243 (9%) Query: 6 WKEQAKQAIHNGFKLIPLRL-GDKRPQR---LGKWEEQLLSSEK------IDKLPACGFG 55 + A++ NG+ P + GD++P + +W E+ + + + A Sbjct: 67 YSHCAQRCWENGWVTFPQQRDGDRKPTKGVTYKQWSERAQTLREVIDMTCLRDAAAQNVA 126 Query: 56 FVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVR--IGQKPKILIPFRMNKE-- 111 V + ++ D+D ++ + + G P +R + K + + + Sbjct: 127 TVT-SAQNRVFVVDVDVQNVAITDAIIRLARRMLGVPFIREYTQSRGKASLIYSTDPAND 185 Query: 112 -------GIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTT-PPHRFKVEDTP 163 + + T ++IL F H KT + + P R + Sbjct: 186 PVALKRSYPVLSRDGKPTSQAVEILSNNAAFTILGRHWKTGSSFQYRGLHPLRDRPTAAA 245 Query: 164 LLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYN 223 +++ + + E V L K + + + + + Sbjct: 246 SVTQTQLRAFLERVSEEIVLLGKLQSYQGREVVFEEGAVEGAQVDTDGLVIPGNAKSVRD 305 Query: 224 GSH 226 S Sbjct: 306 VSW 308 >gi|125974153|ref|YP_001038063.1| hypothetical protein Cthe_1647 [Clostridium thermocellum ATCC 27405] gi|125714378|gb|ABN52870.1| conserved hypothetical protein [Clostridium thermocellum ATCC 27405] Length = 851 Score = 74.9 bits (182), Expect = 5e-11, Method: Composition-based stats. Identities = 36/265 (13%), Positives = 64/265 (24%), Gaps = 37/265 (13%) Query: 19 KLIPLRLGDKRPQ---RLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDS--- 72 IP R W + ++ G FV L DID Sbjct: 30 SKIPYNPLTGRKASSTNPNDWSTLDDAIAAKEQYLYTGLDFVFAK-SGGLVGIDIDHCRD 88 Query: 73 -KDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGC 131 + ++T KD E + + I ++ K ++T+ +++ Sbjct: 89 KNTGELSDTAKDILERFPSYTEISPSGTG-LHIFYKGEMPA----KGNKNTKTGVEMYAH 143 Query: 132 GQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSI 191 +YF + TP ED L + + KS Sbjct: 144 SRYFTMTG-----------------DPLPGTPDSIAEDNGALAWIHENYIKSKKRSGKSK 186 Query: 192 IPSKTWT-NNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIA 250 K + + + + E +W E + Sbjct: 187 KNRKNFKLEPLTDEEILEKAQTAENHKEFELLWEG--KWQEAGYPSQSEADLALCCMLAF 244 Query: 251 RRWSKQGSTY----DEENFNYKWDT 271 + + F KWDT Sbjct: 245 WSGKNKEQMDRLFRNSGLFREKWDT 269 >gi|284028383|ref|YP_003378314.1| Bifunctional DNA primase/polymerase [Kribbella flavida DSM 17836] gi|283807676|gb|ADB29515.1| Bifunctional DNA primase/polymerase [Kribbella flavida DSM 17836] Length = 290 Score = 74.5 bits (181), Expect = 6e-11, Method: Composition-based stats. Identities = 20/149 (13%), Positives = 38/149 (25%), Gaps = 4/149 (2%) Query: 50 PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMN 109 P G L D+D + + L + + +R Sbjct: 70 PDGQLAVRTGAVA-GLVVVDVDPAHGGNDSLAELVTHQLVPRTLWVRTGSGGAHLYYRHP 128 Query: 110 KEGIKKKKTTESTQGHLDILGCGQYFVAYNI-HPKTKKEYTWTTPPHRFKVEDTPLLSEE 168 I + + +D+ G Y V H +T Y W + P L++ Sbjct: 129 GREIASRPMPG--RAGIDVKADGGYVVLPPSMHHRTHLPYQWGSGPADPTEMPPALITAC 186 Query: 169 DVEYLFKFFQEITVPLVKDKKSIIPSKTW 197 + P+ + I + Sbjct: 187 LPATPAESATRTAGPIRTTRAGGISNPEG 215 >gi|323138660|ref|ZP_08073727.1| Bifunctional DNA primase/polymerase [Methylocystis sp. ATCC 49242] gi|322396148|gb|EFX98682.1| Bifunctional DNA primase/polymerase [Methylocystis sp. ATCC 49242] Length = 416 Score = 74.5 bits (181), Expect = 6e-11, Method: Composition-based stats. Identities = 28/227 (12%), Positives = 55/227 (24%), Gaps = 24/227 (10%) Query: 10 AKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEK-----IDKLPACGFGFVCGVGEQP 64 A + G + P KRP KW E + P Sbjct: 23 AHELAAAGLHVHPCDA-TKRPLT--KWSESSSIDAARIDDWWTRWPDALPAIDL--ASAG 77 Query: 65 LYAFDID-SKDEKTANTFKDTFEIL---HGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120 L D D F + G P++ + + FR + + ++ Sbjct: 78 LLVIDADRHGGPDGVAAFDQLVAVHGLPDGAPVIETAR-GGLHYIFRNLPDQLGNREGGL 136 Query: 121 STQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPP----HRFKVEDTPLLSEEDVEYLFKF 176 + +G +++ G G Y +A + + + P + + Sbjct: 137 AGRG-INVRGAGGYIIAPGSILPDGRCWREADGSPTLVEAYSSGTIPEVPAW----IVAL 191 Query: 177 FQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYN 223 ++ P + R + E N Sbjct: 192 IRDKPARPEPSPSPSRPPGSREEAYARAAIDDEAAKVAGAAEGGRNN 238 >gi|301116645|ref|XP_002906051.1| conserved hypothetical protein [Phytophthora infestans T30-4] gi|262109351|gb|EEY67403.1| conserved hypothetical protein [Phytophthora infestans T30-4] Length = 325 Score = 74.2 bits (180), Expect = 8e-11, Method: Composition-based stats. Identities = 36/232 (15%), Positives = 75/232 (32%), Gaps = 14/232 (6%) Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569 GGSGKS L NL+K+AFG + S Q + + A ++ I Sbjct: 66 GGSGKSLLANLVKFAFGQDQIGLLSNSM--QEKFGLSEFATKQIVCCDDMPHNIAKTLPR 123 Query: 570 NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIV 629 +D + M ++ + + + I N ++ RR ++ Sbjct: 124 SDFL------SMMTRGSISCPVKGKGSIEVLDWNIPTLINSNHMPNYKDEAGEIVRRLMI 177 Query: 630 IPFDKPIANR--DASFAQKLETKYTLEAKKWF----LKGVKAYISKGLDVDIPEVCLKAK 683 + F K + + D QK++ + ++ Y SK + P+ + Sbjct: 178 VEFGKQVPDDEVDVELEQKIKDQEFATFLHRCRSKYIEFKAKYASKKVTAFAPQSFIDRS 237 Query: 684 EEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIST 735 E R+ + + E + + + +++ D+ Sbjct: 238 NEFRETANNSYGFAMGNVAYEEGAEISRSEMRRHLLVWMQEKFGLDKLPKEQ 289 >gi|160946062|ref|ZP_02093280.1| hypothetical protein PEPMIC_00015 [Parvimonas micra ATCC 33270] gi|158447845|gb|EDP24840.1| hypothetical protein PEPMIC_00015 [Parvimonas micra ATCC 33270] Length = 107 Score = 74.2 bits (180), Expect = 8e-11, Method: Composition-based stats. Identities = 23/107 (21%), Positives = 43/107 (40%), Gaps = 10/107 (9%) Query: 680 LKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVT 739 +KA +E R+ D +I++ C I ES L Y ++ Q + + R+ Sbjct: 1 MKATDEYREDMDILGPYINENCIINPMAKVESRKLYDDYKKWCYQNDELE---LKNRSFY 57 Query: 740 LNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDNSNIID 786 L +GF K ++ +K G+ LK + ++ + D Sbjct: 58 RQLVTRGF-------KKKRGTANKIFFYGIGLKKEQSYLSNSFSNSD 97 >gi|123188785|ref|XP_001281913.1| hypothetical protein [Trichomonas vaginalis G3] gi|121837810|gb|EAX68983.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 270 Score = 74.2 bits (180), Expect = 8e-11, Method: Composition-based stats. Identities = 44/277 (15%), Positives = 81/277 (29%), Gaps = 33/277 (11%) Query: 478 ESEEVMDYFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLM-NLIKYAF-GNQYVINAE 534 +E V +Y L K + + I G G+GK+T +++ G Sbjct: 3 GNERVYEYILCWFANILQHPSAKNETALIIIGKQGTGKNTFFTDILCKLLEGYSNPNMTN 62 Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594 +I N S+ + + + +N+ +K + Y Sbjct: 63 LENICGKF-------NSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYK 115 Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLE 654 + + + N D RRY+V+ +D + L T Sbjct: 116 DQRVCENVANFIMVSNNVVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTPN 171 Query: 655 AKKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WID----DCCDIGENLW 708 + IP + ++ + + +ID +C D Sbjct: 172 FYNHLFSYFMTLDISKFNPRQIPHT--EERQTLLEANKSVYELFIDETNFECLDE----- 224 Query: 709 EESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK 745 SL SY +Y ++ Y S RT N+K Sbjct: 225 ---RSLYDSYKQYCQE---YGYMAASKRTFLANVKSL 255 >gi|301115482|ref|XP_002905470.1| conserved hypothetical protein [Phytophthora infestans T30-4] gi|262110259|gb|EEY68311.1| conserved hypothetical protein [Phytophthora infestans T30-4] Length = 243 Score = 74.2 bits (180), Expect = 9e-11, Method: Composition-based stats. Identities = 43/245 (17%), Positives = 80/245 (32%), Gaps = 36/245 (14%) Query: 503 FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIV 562 + + G GGSGKS LMNL+K +G L +++ Sbjct: 1 MVLLYGEGGSGKSLLMNLLKAIWG--------------------------LKEYSQKQVL 34 Query: 563 IISETNE-NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVP-NKHLFVRNPD 620 + + + A M + ++ + I+ NK ++ Sbjct: 35 CCDDMDNLAKTLPKADFLSMATPESISCPVKGKQRLVIVLDWNIGAILNDNKLPNYKDES 94 Query: 621 DAWWRRYIVIPFDKPIANRDAS--FAQKLETKYTLEAKKWF----LKGVKAYISKGLDVD 674 RR++V F I + F ++ + LK Y KG++ Sbjct: 95 GEVVRRFMVANFMNIIPEERENTIFENDIKDQEFGVFLHRCRSAYLKFYFKYKIKGVESF 154 Query: 675 IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIS 734 P ++ + R T+ +I + C E L K+ Y ++ Y+ K+ S Sbjct: 155 CPVSFIENRNLLRMATNYTYQFISEKCTYEEGASISVSQLNKALKAYIKE--RYEMKQTS 212 Query: 735 TRTVT 739 T+ Sbjct: 213 KDTIN 217 >gi|301386003|ref|ZP_07234421.1| bifunctional DNA primase/polymerase [Pseudomonas syringae pv. tomato Max13] Length = 811 Score = 74.2 bits (180), Expect = 9e-11, Method: Composition-based stats. Identities = 93/720 (12%), Positives = 182/720 (25%), Gaps = 142/720 (19%) Query: 105 PFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDT-- 162 +R + E K+ E G + Q + +IHP T + YTW TPP + Sbjct: 77 LYRADAEKYKRLTVFELRAGLV------QDVLPPSIHPGTGQPYTWRTPPDASGLPVLIG 130 Query: 163 ------------PLLSEEDVEYLFKFFQEITVPLVKDKKSII--PSKTWTNNNNRQYTNR 208 +E +L K + K K++ + + + N + Sbjct: 131 DLLNVWNNWDVFKRGAEAACPWLPKDAKPTAKQKPKPKRAPVAGNRPSVIDEFNNCHDVE 190 Query: 209 EITA------------------------------FLSCFGEEFYNGSHDEWIPVVMAVHH 238 EI + + NG ++ V + H Sbjct: 191 EILRSHGYTKRGGKWLYPQSSTGLPGITVAEGKVYSHHAADPLANGHQNDAFEVFCLLEH 250 Query: 239 ETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLI 298 S K+ AR Q D + + Sbjct: 251 GGDQSKAVKDAARMLGMQS---------------TRPSASDLPPAPTEGSDKPDAAAPDA 295 Query: 299 PKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNF 358 + A + + L T W DK+ F Sbjct: 296 ASEAAPAPDGGAGEELTIEQVLRRFALVEGTTHVW-DFDKS-----------RAMKKSAF 343 Query: 359 LVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSIT 418 + + + L + D + + + + E T Sbjct: 344 EARVGKPIAKLWLDATDKKL---IADDQVKDIEQARKMAGKKGGALGMRPTERYVYIDGT 400 Query: 419 SDLLDS----------------SSRFLGEQDG---ILDLETGQKVKPTKELYITKSTGTP 459 D+ D + L G ++D+E + Sbjct: 401 KDVWDREKKRRIAEGAVKMALGDTYALWLNSGERRVVDVEHIVFDPTMTKDPSIYINTFD 460 Query: 460 FVEGEPSQEF-----LDLVSGYFESEEVMDYFT--RCVGMAL--LGGNKAQRFIHIRGVG 510 + EP + L + + + + R + L LG + + Sbjct: 461 GLPLEPVNDDAACANLRWLISFLCNHDEAAALWLTRWLAYPLQHLGAKMDTAVLMHSTME 520 Query: 511 GSGKS-TLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569 GSGKS + +G + ++N + + V + Sbjct: 521 GSGKSLLFADTFGALYGQYAATVGQTQL----------ESNFNAWQSRKMWAVFEEVVSR 570 Query: 570 NDEIN-AAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHL-FVRNPDDAWWRRY 627 + N KIK + G + + N + E+ F+ + + D RR Sbjct: 571 DQRYNQVGKIKHLVTGKTVRMESKFINGWEEANHMNAVFLSNEILPWPISDSD----RRM 626 Query: 628 IVI-PFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEV----CLKA 682 +V+ P + R + ++LE W L+ ++ + Sbjct: 627 LVMWPMETLPVARQKAIGRELENGGVAALYGWLLRVDLGDFNERTRPPSTASRERLVALS 686 Query: 683 KEEERQGTDTYQAWIDDCCDIGENLWEE--SHSLAKSYSEYREQELNYDRKRISTRTVTL 740 + + W ++G LW S L + E+ ++ +S +L Sbjct: 687 RAGWQT---FLHLW--RYGELGRGLWGACLSTDLYALFIEWCQRNKE---HVMSQTKFSL 738 >gi|184154704|ref|YP_001843044.1| hypothetical protein LAF_0228 [Lactobacillus fermentum IFO 3956] gi|183226048|dbj|BAG26564.1| hypothetical phage protein [Lactobacillus fermentum IFO 3956] Length = 274 Score = 74.2 bits (180), Expect = 9e-11, Method: Composition-based stats. Identities = 36/285 (12%), Positives = 69/285 (24%), Gaps = 39/285 (13%) Query: 7 KEQAKQAIHNGFKLIPLRLGDKRPQRL-GKWEEQLLSSEKIDKLPAC-GFGFVCGVGEQP 64 K +A Q G + PL G K P + + E ++ I + G G Sbjct: 4 KRRALQLAQAGVPVYPLAPGSKTPPKGHHGYREATTDTDTILRWSDDWGLGIDL--FTAG 61 Query: 65 LYAFDID-----------SKDEKTANTFKDTFEIL---HGTPIVRIGQKPKILIPFRMNK 110 + D+D + K E P+ L F Sbjct: 62 IVVLDLDRPGTTTDGKAVHGGKDGVKALKIYLEQHQRQLPHPMYAEQTPHGGLHLFFKLD 121 Query: 111 EGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWT-TPPHRFKVEDTPLLSEED 169 + +++ + +DILG + +A Y + DT + Sbjct: 122 QPLERPTRKTNALPGVDILGD--FVIASPSEVD-GSPYLVMQDQTQPVSIHDTATAPQWI 178 Query: 170 VEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEW 229 V L + T + G + W Sbjct: 179 VGLLTAPQTAFNPAKTNSLMKGQKTYTGR--------------LFDKIAQGADEGERNNW 224 Query: 230 IP-VVMAVHHETRGSSKGKEI--ARRWSKQGSTYDEENFNYKWDT 271 + V ++ + + + D+ N + + Sbjct: 225 LASVTGSILNAGTDPANAYYLIGWINERFISPPLDDREVNAVFKS 269 >gi|299782825|gb|ADJ40823.1| Hypothetical phage protein [Lactobacillus fermentum CECT 5716] Length = 274 Score = 74.2 bits (180), Expect = 1e-10, Method: Composition-based stats. Identities = 37/285 (12%), Positives = 70/285 (24%), Gaps = 39/285 (13%) Query: 7 KEQAKQAIHNGFKLIPLRLGDKRPQRL-GKWEEQLLSSEKIDKLPAC-GFGFVCGVGEQP 64 K +A Q G + PL G K P + + E ++ I + G G Sbjct: 4 KRRALQLXQAGVPVYPLAPGSKTPPKGHHGYREATTDTDTILRWSDDWGLGIDL--FTAG 61 Query: 65 LYAFDID-----------SKDEKTANTFKDTFEIL---HGTPIVRIGQKPKILIPFRMNK 110 + D+D + K E P+ L F Sbjct: 62 MLVVDLDRPGTDRNGHAVHGGKNGVKALKRYLEQHQRRLPHPMYAEQTPHGGLHLFFKLD 121 Query: 111 EGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPH-RFKVEDTPLLSEED 169 + ++K + +DILG + +A Y + DT + Sbjct: 122 QPLQKPTRKPNALPGVDILGD--FVIASPSEVD-GSPYLVMQGQAQPVSIHDTATAPQLI 178 Query: 170 VEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEW 229 V+ L + T + G + W Sbjct: 179 VDLLTAPQTAFNPTKANSFMKGQKTYTGR--------------LFDKIAQGANEGERNNW 224 Query: 230 IP-VVMAVHHETRGSSKGKEI--ARRWSKQGSTYDEENFNYKWDT 271 + V ++ + + + D+ N + + Sbjct: 225 LASVTGSILNAGTDPANAYYLIGWINERFISPPLDDREVNAVFKS 269 >gi|33603114|ref|NP_890674.1| hypothetical protein BB4140 [Bordetella bronchiseptica RB50] gi|33568745|emb|CAE34503.1| phage-related hypothetical protein [Bordetella bronchiseptica RB50] Length = 700 Score = 73.8 bits (179), Expect = 1e-10, Method: Composition-based stats. Identities = 37/280 (13%), Positives = 75/280 (26%), Gaps = 54/280 (19%) Query: 33 LGKWEEQLLSSEKIDKLPACG----FGFVCGVGEQPLYA--FDIDSKDEKTANTFKDTFE 86 W + L G GF G E + D D + D Sbjct: 83 PDDWAHLASYEDAKATLSRLGAGWILGFALGPDESGGHWQGIDFDDIPQNL---LSDLAN 139 Query: 87 ILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKK 146 +HG V +K I + + T ++ G+YF Sbjct: 140 DVHGYVEVSPSRKGAHAIGYG------RHFATLGHNGTGIEAYAKGRYFTVT-------- 185 Query: 147 EYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYT 206 + + + L + +E P +++ T N + Sbjct: 186 ---------------EQRIRDGGLICLAAYIEETLAPRHGARRATNAGMTEVVPVNAKTV 230 Query: 207 NREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFN 266 +A L + W+ + +A+ G+ + WS +D ++ Sbjct: 231 TELRSALL-----YMRAEDYHLWVNMGLALREL---GETGRGLWMEWSATSEKFDSKDAA 282 Query: 267 YKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASR 306 KW++F +++ ++F + S Sbjct: 283 KKWNSFKPTG--------TSYQAVFAEAARHGWVNPGRSD 314 >gi|81428209|ref|YP_395209.1| hypothetical protein LSA0594 [Lactobacillus sakei subsp. sakei 23K] gi|78609851|emb|CAI54898.1| Hypothetical prophage lsa1protein [Lactobacillus sakei subsp. sakei 23K] Length = 266 Score = 73.8 bits (179), Expect = 1e-10, Method: Composition-based stats. Identities = 27/164 (16%), Positives = 49/164 (29%), Gaps = 20/164 (12%) Query: 10 AKQAIHNGFKLIPLRLGDKRPQR-LGKWEEQLLSSEKIDKL----PACGFGFVCGVGEQP 64 A G ++ PL K P + +E + E++ P C G + Sbjct: 8 AMSYAKRGLQVFPLTPNSKIPLKGTQGSKEATSTPEQVKTWWTNNPDCNIGVAT----RG 63 Query: 65 LYAFDIDSKDEKTANT------FKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKT 118 DID A+ +DT+ L T V+ + + EG++ + Sbjct: 64 FIVLDIDINHVDDADGYHSLEVLEDTYNKLPETLTVKTASGGR--HLYFKLPEGVELPQK 121 Query: 119 TESTQGHLDILGC-GQYFVAYNIHPKTKKEYTWTTPPHRFKVED 161 +DI Y + YT+ + + Sbjct: 122 IAFL-NGVDIKANPNNYVLLPPSRI-NGDAYTFENKRPMADLPE 163 >gi|33865636|ref|NP_897195.1| hypothetical protein SYNW1102 [Synechococcus sp. WH 8102] gi|33632806|emb|CAE07617.1| conserved hypothetical protein [Synechococcus sp. WH 8102] Length = 688 Score = 73.8 bits (179), Expect = 1e-10, Method: Composition-based stats. Identities = 40/207 (19%), Positives = 65/207 (31%), Gaps = 25/207 (12%) Query: 4 MQWKEQAKQAIHNGFKLIPLRLGDKRPQRLG--------KWEEQLLSSEKIDKLPACG-- 53 M W+E+ + GF L+P G+K + W + + + I L G Sbjct: 1 MSWREKLPEL--QGFALLPCGAGEKGKAPIDQVTGKHLNNWPDASFTPDDI--LAMNGKV 56 Query: 54 --FGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMN-- 109 G G L DID T G I R ++ + F++N Sbjct: 57 KCVGVRPGPDSDNLLFIDIDGASALTFCQEHRCDLKDAGWIIRRTTADDRLKVAFQINDQ 116 Query: 110 ---KEGIKKKKTTESTQGH--LDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPL 164 +E KT ST L++ V H + +Y W P P Sbjct: 117 ELEEELSDIGKTVHSTGAGEQLELFWSTGQCVVLGDHKTSGGQYVWEGSPAEIDSPTEP- 175 Query: 165 LSEEDVEYLFKFFQEITVPLVKDKKSI 191 E ++ L + ++ + K Sbjct: 176 -WRELIKLLIQITRQRQSSSGQSDKGD 201 >gi|289642846|ref|ZP_06474982.1| Bifunctional DNA primase/polymerase [Frankia symbiont of Datisca glomerata] gi|289507323|gb|EFD28286.1| Bifunctional DNA primase/polymerase [Frankia symbiont of Datisca glomerata] Length = 300 Score = 73.8 bits (179), Expect = 1e-10, Method: Composition-based stats. Identities = 29/218 (13%), Positives = 57/218 (26%), Gaps = 42/218 (19%) Query: 11 KQAIHNGFKLIPLRLGDKRP---------------------QRLGKWEEQLLSSEKIDKL 49 + I G+ + + KRP + L +++ + Sbjct: 13 ESYIEAGWPVF-VLGRTKRPVANCPRCRDAGRDHDPEACACLSCHGFYAATLDLDRVAAM 71 Query: 50 PACG----FGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIP 105 + G L DID + + T V G + Sbjct: 72 LSAAPRGLLAIRTGALA-GLVVVDIDPGHGGRLDPAL-----MTPTAAVASG-GGGWHLY 124 Query: 106 FRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNI-HPKTKKEYTWTTPPHRFKVEDTPL 164 + + ++ T +D+ G Y VA HP T+ Y WT Sbjct: 125 YAHPGPPVLSRRLPGRT--GVDVKADGGYVVAPPSIHPVTRTPYRWTARQT------VGE 176 Query: 165 LSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNN 202 + + + P + P++ T ++ Sbjct: 177 MPPPLHAAVTAPAAPSSQPTRPPATAGPPARRPTGGDD 214 >gi|283778057|ref|YP_003368812.1| bifunctional DNA primase/polymerase [Pirellula staleyi DSM 6068] gi|283436510|gb|ADB14952.1| Bifunctional DNA primase/polymerase [Pirellula staleyi DSM 6068] Length = 409 Score = 73.8 bits (179), Expect = 1e-10, Method: Composition-based stats. Identities = 28/152 (18%), Positives = 48/152 (31%), Gaps = 14/152 (9%) Query: 17 GFKLIPLRLGDKRPQ--RLGKWEEQLLSSEKIDKL----PACGFGFVCGVGEQPLYAFDI 70 G L+PL K+P +++ I P G V G + A D Sbjct: 16 GLSLLPLHYKQKKPAVRSWKRYQTTRPDEATIYHWWANHPERGLAIVLGQVSSCIVARDF 75 Query: 71 DSKDEKTANTFKDTFEILHGT-PIVRIGQKPKILIPFRMNKEGIKK--KKTTESTQGHLD 127 D+ + + +F L P V + + R + E I++ K+T + Sbjct: 76 DTMEA--YEQWAASFSELAAKLPTVETSR--GRHVYARADFEAIRRRGKETIYEFDDG-E 130 Query: 128 ILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKV 159 + G Y A + +Y W Sbjct: 131 LRLSGCYVAAPPSMHPSGSQYRWLISMVELPP 162 >gi|240171663|ref|ZP_04750322.1| hypothetical protein MkanA1_20283 [Mycobacterium kansasii ATCC 12478] Length = 834 Score = 73.8 bits (179), Expect = 1e-10, Method: Composition-based stats. Identities = 30/187 (16%), Positives = 47/187 (25%), Gaps = 28/187 (14%) Query: 17 GFKLIPLRL----GDKRPQRLGK--WEEQLLSSEK-IDKLPA---CGFGFVCGVGEQPLY 66 G+ ++P+R K P + W + S + I A G CG Sbjct: 89 GWYVLPVRRVAGKAGKHPGGIVGHEWHHKSSSDPQVIAAWYAATDHGIALHCGR--SGAV 146 Query: 67 AFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKP---KILIPFRMNK-EGIKKKKTTEST 122 FD+D D D T + + + F M + + Sbjct: 147 VFDVDDPDA-----MPDVLARHLDTAPHQSSRPDTPRRGHYVFAMPPGQTLGNGTGRLGG 201 Query: 123 QGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITV 182 +I G +A EY W P+L + E L Sbjct: 202 AWG-EIRGANGVIIAAPSWHPEGGEYRWAHAGI------VPVLPADIAELLPDAASAEDA 254 Query: 183 PLVKDKK 189 Sbjct: 255 VSDAVVA 261 >gi|284031274|ref|YP_003381205.1| Bifunctional DNA primase/polymerase [Kribbella flavida DSM 17836] gi|283810567|gb|ADB32406.1| Bifunctional DNA primase/polymerase [Kribbella flavida DSM 17836] Length = 307 Score = 73.4 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 18/180 (10%), Positives = 43/180 (23%), Gaps = 6/180 (3%) Query: 50 PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMN 109 P G+ L D+D + + L + + +R Sbjct: 77 PGGQLAVRTGMVS-GLLVVDVDPAHGGWESLSELVARQLVPRTLWVRTGSDGAHLYYRHP 135 Query: 110 KEGIKKKKTTESTQGHLDILGCGQYFVAYNI-HPKTKKEYTWTTPPHRFKVEDTPLLSEE 168 + + + +D+ G Y V H +T++ Y W T + Sbjct: 136 GLHMPSRPMPN--RPGIDVKADGGYVVLPPSIHHRTRRPYAWGTGSDLADPAAVVEMPPP 193 Query: 169 DVEY--LFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSH 226 + + P + ++ + + A + + Sbjct: 194 LIAACLPATPAESTHAPSAPLSGPQRDTGGGGISHPDKLLTAHLDAVRQAPQGKRRTTLY 253 >gi|326955330|gb|AEA29023.1| Bifunctional DNA primase/polymerase [Pseudonocardia dioxanivorans CB1190] Length = 296 Score = 73.4 bits (178), Expect = 1e-10, Method: Composition-based stats. Identities = 28/206 (13%), Positives = 46/206 (22%), Gaps = 31/206 (15%) Query: 18 FKLIPLRLGDKRPQRLGKWEEQLLSS----EKIDKLPACGFGFVCGVGEQPLYAFDIDSK 73 F + P+ K P W+++ E + G V G L D+D Sbjct: 21 FPIFPVAPFGKTPAVRR-WQDRATQDNRVIEAWYRQAPFNIGLVTGK---GLVVVDLDVA 76 Query: 74 DEK---------------TANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKT 118 A ++T E G + F ++ + Sbjct: 77 RGGDGRSGESGELSGREHLARIARETGEEYPGDTYTVRTPSGGDHLYFAVSDREFLRNTG 136 Query: 119 TESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQ 178 +D G Y VA Y + L Sbjct: 137 -GRLGARIDTRANGGYIVAAGSRRP-GGMYRVVNRRPIAPL------PSWLATALAPTPP 188 Query: 179 EITVPLVKDKKSIIPSKTWTNNNNRQ 204 V S + T+ N + Sbjct: 189 TPRPAPVHAVASGNLTGYVTSAINAE 214 >gi|258616764|ref|ZP_05714534.1| prophage Lp4 protein 7, DNA replication [Enterococcus faecium DO] Length = 241 Score = 73.4 bits (178), Expect = 2e-10, Method: Composition-based stats. Identities = 32/234 (13%), Positives = 64/234 (27%), Gaps = 28/234 (11%) Query: 8 EQAKQAIHNGFKLIPLRLGDKRPQR-LGKWEEQLLSSEKIDKL----PACGFGFVCGVGE 62 + A + +G+ + PL G K P + W + S +I++ G + + Sbjct: 6 QAATELQKSGWSIYPLSPGTKIPIKGSSGWNDATNDSNQINEWWTEDATRNIGLML--ED 63 Query: 63 QPLYAFDID----SKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNK-------- 110 + D+D +++ + + I I F++ Sbjct: 64 HQMVVVDLDQHSETRNGVENYKKLASMYDPFPSTYTEITPGKGIHFFFKIPDGVIIQQET 123 Query: 111 EGIKKKKTTESTQ---GHLDILGCGQYFVAYNIHPKT-KKEYTWTTPPHRFKVEDTPLLS 166 + +DI+ G I ++ + Y P + + Sbjct: 124 GAFADIFGRDDKGKSLSGIDIITKGVPIAPTMIISRSVGRAYE---PIENVSLNNIAPAP 180 Query: 167 EEDVEYLFKFFQEITVPLVKDKKSIIPSKTWT--NNNNRQYTNREITAFLSCFG 218 + V L K QEI K+ K N +T Sbjct: 181 DWLVNLLLKKPQEIKTQYRPVAKTGTAKKLDMIVQGAGEGSRNDHLTKLCGWLL 234 >gi|323138608|ref|ZP_08073675.1| Bifunctional DNA primase/polymerase [Methylocystis sp. ATCC 49242] gi|322396096|gb|EFX98630.1| Bifunctional DNA primase/polymerase [Methylocystis sp. ATCC 49242] Length = 721 Score = 73.4 bits (178), Expect = 2e-10, Method: Composition-based stats. Identities = 26/165 (15%), Positives = 43/165 (26%), Gaps = 22/165 (13%) Query: 10 AKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPA---CGFGFVCGVGEQPLY 66 A I G+ IP+ K P W + +S+++ + C G G L Sbjct: 30 ALDYIERGWSPIPISFRSKAPSLP-GWTDLRISADEASRYFNGAPCNIGVALGEVSGGLV 88 Query: 67 AFDIDSKDEKTAN-TFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGH 125 D+D ++ A F + G R + N + Sbjct: 89 DVDLDCREAIAAAPYFLQKTAAIFGRETAR-----ASHWLYYTNSASVNLSANVYFDDPI 143 Query: 126 ----------LDIL-GCGQYFVAYNI-HPKTKKEYTWTTPPHRFK 158 +D+ G V H T + W Sbjct: 144 AKERGAKARLVDLRLGPKVQTVFPGSAHEDTSEPIAWEPGCDGEP 188 >gi|90962176|ref|YP_536092.1| hypothetical protein LSL_1201 [Lactobacillus phage Sal4] gi|90821370|gb|ABE00009.1| Hypothetical protein, phage associated [Lactobacillus phage Sal4] gi|300214850|gb|ADJ79266.1| Putative uncharacterized protein [Lactobacillus salivarius CECT 5713] Length = 256 Score = 73.0 bits (177), Expect = 2e-10, Method: Composition-based stats. Identities = 25/178 (14%), Positives = 51/178 (28%), Gaps = 16/178 (8%) Query: 9 QAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPAC--GFGFVCGVGEQPLY 66 Q + + G + P+ K+P + + + I + + + L Sbjct: 6 QVIKMVQRGLYVYPIVPNGKQPIKDYSYLKASQDIALIKRWFMDEPNINIGLNLAKSNLI 65 Query: 67 AFDIDSKDEKTANTFKDT--FEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQG 124 DID+ + + + V Q + FR NK +KT Sbjct: 66 VVDIDNHNNDLQAPLQSLSNLGYNLPSDYVERTQSGGLHYYFRSNKPVKPTRKTKFID-- 123 Query: 125 HLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITV 182 +D+L + V+ + Y ++D P ++ L Sbjct: 124 GVDLLSD--FVVSSPSN-----NYKVLNGA---TLDDIPQAPNWIIKALDNRAMPTDK 171 >gi|222475878|ref|YP_002564399.1| hypothetical protein Hlac_2965 [Halorubrum lacusprofundi ATCC 49239] gi|222454249|gb|ACM58513.1| conserved hypothetical protein [Halorubrum lacusprofundi ATCC 49239] Length = 440 Score = 72.6 bits (176), Expect = 2e-10, Method: Composition-based stats. Identities = 41/327 (12%), Positives = 84/327 (25%), Gaps = 26/327 (7%) Query: 1 MPVMQWKEQAKQAIHNGFKLIPLRLGD---KRPQRLGKWEEQLLSSEKIDKLPACGFGFV 57 + QW Q + +P+ G W + + + + P G GFV Sbjct: 15 VDRDQWVCWRSQQREDKHTKVPIIPGTTQFASTTDPDTWRDFQTARKAVTSTPVDGLGFV 74 Query: 58 CGVGEQPLYAFDI-DSKDEKTANT---FKDTFEILHGTPIVRIGQKPKILIPFRMNKEGI 113 + PL D+ D +D T L V + ++ EG Sbjct: 75 F-TTDDPLIGIDLDDCRDPDTGEPTAWASQIITQLDSYTEVSPSETGYHILVTGALPEG- 132 Query: 114 KKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYL 173 + G+L++ ++F + + SE E Sbjct: 133 ------RNRAGNLELYDRSRFFTVTGTQLAETPATVAERTAAVASLHAEKVASESSSEPP 186 Query: 174 FKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGS---HDEWI 230 P + ++ + NR A + G ++ Sbjct: 187 STTTDR--SPNDDTTAPETATAGVGALSDEELLNRATAAANGAKFRRLWGGDTSGYESHS 244 Query: 231 PVVMAVHH-----ETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRS 285 MA+ R + + R+ +DE ++ T+ + + + Sbjct: 245 EADMALCRLLAFWTGRDRGRMDRLFRQSGLARDKWDEVHYADG-STYGEKTLERAIARTD 303 Query: 286 TFTSLFYHHGKLIPKGLLASRFSDAYN 312 + G + D+ Sbjct: 304 DVYTPPGTADASPSAGDTDTAPDDSAA 330 >gi|254555204|ref|YP_003061621.1| prophage Lp3 protein 7 [Lactobacillus plantarum JDM1] gi|254044131|gb|ACT60924.1| prophage Lp3 protein 7 [Lactobacillus plantarum JDM1] Length = 266 Score = 72.6 bits (176), Expect = 3e-10, Method: Composition-based stats. Identities = 26/195 (13%), Positives = 49/195 (25%), Gaps = 22/195 (11%) Query: 8 EQAKQAIHNGFKLIPLRLGDKRPQR-LGKWEEQLLSSEKIDKL----PACGFGFVCGVGE 62 ++A + G+ + PL K+P + + ++ I PA G Sbjct: 8 DKAIELAQQGYAVYPLIENTKKPPKGVAGYQAATSDQNTIFAWFKKHPAYNLGLRL--DL 65 Query: 63 QPLYAFDIDSKDEKTA-----NTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKK 117 L DID D + L + + + +K Sbjct: 66 SDLLVVDIDMHDPTKNGRASLAQLFKQGQTLPNDTYIERTANGGVHYFLKYAGAKARKI- 124 Query: 118 TTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFF 177 +D+L + V K Y + D + V+ L Sbjct: 125 ---DVWPGIDLLSD--FTVIAPSEI-NGKPYQ---AIDGRTLADIKPAPQWLVDKLAGQK 175 Query: 178 QEITVPLVKDKKSII 192 T + + Sbjct: 176 VNWTSEHACNTRQKK 190 >gi|67922845|ref|ZP_00516344.1| hypothetical protein CwatDRAFT_3556 [Crocosphaera watsonii WH 8501] gi|67855338|gb|EAM50598.1| hypothetical protein CwatDRAFT_3556 [Crocosphaera watsonii WH 8501] Length = 514 Score = 72.6 bits (176), Expect = 3e-10, Method: Composition-based stats. Identities = 28/257 (10%), Positives = 72/257 (28%), Gaps = 10/257 (3%) Query: 238 HETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKL 297 T + + R+ + + E D + KL Sbjct: 215 SVTAARERLSDCFRQACCKVTCLAWETEEKGIDDAIAANGSQWFDEMWKKRGSKPKTVKL 274 Query: 298 IPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIW----SLTLDKITA 353 +++ + + +Y TK WY +W + +++++ Sbjct: 275 SRIEHDLPAWNEKSITDWLATLYEKKLIYEDRTKEWYLYGGQKEGVWSITSNESIERMLM 334 Query: 354 SIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDY---RRQNVEENSKAKSTAQSLE 410 + M+ L+ + + K S +F + Q ++ S + Sbjct: 335 TQMDNLLDESKKFNKQIYTAMKSVKESNRDKFEKKELLSQLKEQLIDYRSYKLRFVKDCR 394 Query: 411 AGSIFSITSDLL--DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE 468 + D S + +G+LDL+ + + + T + + P Q Sbjct: 395 ERLSRVVLIDKFVSKSDPNLIPMANGVLDLQDRILHPHSPKNHYTSALPYEYAPNTPYQP 454 Query: 469 FLDLVSGYF-ESEEVMD 484 + + +++ Sbjct: 455 IKEWLIEMLEGDLSLVE 471 >gi|258543727|ref|YP_003189160.1| DNA recombinase RecA [Acetobacter pasteurianus IFO 3283-01] gi|256634805|dbj|BAI00781.1| DNA recombinase RecA [Acetobacter pasteurianus IFO 3283-01] gi|256637861|dbj|BAI03830.1| DNA recombinase RecA [Acetobacter pasteurianus IFO 3283-03] gi|256640915|dbj|BAI06877.1| DNA recombinase RecA [Acetobacter pasteurianus IFO 3283-07] gi|256643970|dbj|BAI09925.1| DNA recombinase RecA [Acetobacter pasteurianus IFO 3283-22] gi|256647025|dbj|BAI12973.1| DNA recombinase RecA [Acetobacter pasteurianus IFO 3283-26] gi|256650078|dbj|BAI16019.1| DNA recombinase RecA [Acetobacter pasteurianus IFO 3283-32] gi|256653068|dbj|BAI19002.1| DNA recombinase RecA [Acetobacter pasteurianus IFO 3283-01-42C] gi|256656122|dbj|BAI22049.1| DNA recombinase RecA [Acetobacter pasteurianus IFO 3283-12] Length = 288 Score = 72.2 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 32/248 (12%), Positives = 72/248 (29%), Gaps = 29/248 (11%) Query: 1 MPVMQWKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEK-----IDKLPACGFG 55 + ++ E+A+ +G K+ P DK+P KW E + + P G Sbjct: 30 LALLPVAEKAQLLARHGLKIFPCN-EDKKPVC--KWSEVATNCPESVPLLWRTYPGTLIG 86 Query: 56 FVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILH---GTPIVRIGQKPKILIPFRMNKEG 112 G D+D ++ +K + + FR + Sbjct: 87 VATGKAS-GFDVLDLDLYKPDADA----WYQEHCARIPATRTHKTRKDGLHLLFRHRENM 141 Query: 113 IKKKKTTESTQGHLDILGCGQYFVAYNI----HPKTKKEYTWTTPPHRFKVEDTPLLSEE 168 + + +D+ G Y + + + W P ++ PL + Sbjct: 142 ---RNSAGKIAPGVDVRADGGYIIWWPAAGYEIIDKSRAQPW--PAWLVEMTQPPLPRKA 196 Query: 169 DVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDE 228 D+E+L + + + + + + +I + F + Sbjct: 197 DLEHL----DNKLKDADRYVQGAVRAAVQAVASAPEGRRNDILNGETYSLARFIPEGYLT 252 Query: 229 WIPVVMAV 236 + A+ Sbjct: 253 ATDIAYAM 260 >gi|227432710|ref|ZP_03914681.1| possible DNA primase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227351526|gb|EEJ41781.1| possible DNA primase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 192 Score = 72.2 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 18/158 (11%), Positives = 47/158 (29%), Gaps = 10/158 (6%) Query: 594 GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI----ANRDASFAQKLET 649 G N+ +++ + RR ++ + D + + Sbjct: 9 GQDSFSFTNHAKLLFTANEAPAIKSN-EGLRRRIKILIAKSSPHVATSGDDDHYTE--YM 65 Query: 650 KYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWE 709 K + + + + + A E D + W+++ N Sbjct: 66 KERGAFVYYAMSLYMEA-KNRRKMSLTKDIEDATAEWFLKGDDIENWVNEHLVEDTNSRP 124 Query: 710 ESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGF 747 S+ + +Y + K S++TV +++ G+ Sbjct: 125 RSNWIYNELKDYWAENGL--EKVPSSKTVMARIRELGY 160 >gi|227544976|ref|ZP_03975025.1| Bifunctional DNA primase/polymerase [Lactobacillus reuteri CF48-3A] gi|300909991|ref|ZP_07127451.1| phage protein [Lactobacillus reuteri SD2112] gi|227185037|gb|EEI65108.1| Bifunctional DNA primase/polymerase [Lactobacillus reuteri CF48-3A] gi|300892639|gb|EFK85999.1| phage protein [Lactobacillus reuteri SD2112] Length = 259 Score = 72.2 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 38/281 (13%), Positives = 78/281 (27%), Gaps = 37/281 (13%) Query: 9 QAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKID----KLPACGFGFVCGVGEQP 64 A Q GF ++P + KRP L+ E++ K P Sbjct: 7 YAIQYAQKGFYVLPTQ--GKRPLIKFA-NTPPLTVEQVKYYWSKYPDANIALRT----VD 59 Query: 65 LYAFDIDSKDEKTANTFKDT----FEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120 + DID+K+ + K L + ++ + ++ K + Sbjct: 60 FFVLDIDTKEAHGKDGMKSYQTLKNTGLIAPTLAQLTASGGNQLFYKKPKNIPVNQ--VI 117 Query: 121 STQGHLDILGC-GQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQE 179 + +DI Y + +K Y W + P + + E Sbjct: 118 GLKQGIDIKAHINNYVIVPPS-TTSKGSYQW--------LNKLP---------MREPKTE 159 Query: 180 ITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHE 239 + + K W+ ++ + + L E + + +H Sbjct: 160 LVKFINKHHPLNNHKNDWSKHHTDKKWTGIVLDNLVKGAPEGQRNDYMTRL-CGQMIHAG 218 Query: 240 TRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDT 280 ++ I S + + + EEIG + Sbjct: 219 ADDNTIWLLIQYANSFNSPPLENKELEKILSSIIREEIGKS 259 >gi|123328427|ref|XP_001293761.1| hypothetical protein [Trichomonas vaginalis G3] gi|121870948|gb|EAX80831.1| hypothetical protein TVAG_173510 [Trichomonas vaginalis G3] Length = 270 Score = 72.2 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 43/277 (15%), Positives = 83/277 (29%), Gaps = 33/277 (11%) Query: 478 ESEEVMDYFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLM-NLIKYAF-GNQYVINAE 534 +E+V +Y L K + + I G G+GK+T +++ G Sbjct: 3 GNEKVYEYILCWFANILQYPSAKNETALIIIGKQGTGKNTFFTDILCKLLEGYSNPNMTN 62 Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594 +I N S+ + + + +N+ +K + Y Sbjct: 63 LENICGKF-------NSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYK 115 Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLE 654 ++ + + N D RRY+V+ +D + L T + Sbjct: 116 DSRVCENVANFIMVSNNVVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSD 171 Query: 655 AKKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WID----DCCDIGENLW 708 + IP + ++ + + +ID +C D Sbjct: 172 FYNHLFSYFMTLDISKFNPRQIPYT--EERQTLLEANKSVYELFIDETNFECLDE----- 224 Query: 709 EESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK 745 SL Y +Y ++ Y S RT N+K Sbjct: 225 ---RSLYDEYKQYCQE---YGYMTASKRTFLANVKNL 255 >gi|86739908|ref|YP_480308.1| hypothetical protein Francci3_1201 [Frankia sp. CcI3] gi|86566770|gb|ABD10579.1| conserved hypothetical protein 2SC10A7.05c [Frankia sp. CcI3] Length = 295 Score = 72.2 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 25/153 (16%), Positives = 43/153 (28%), Gaps = 17/153 (11%) Query: 37 EEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRI 96 ++ + +P G L DID ++ T + + T V Sbjct: 63 TDRNRIVAMLAAVPDGLLAIRTGTAA-GLAVIDIDPRNGGTLDRSL-----MTPTAAVAT 116 Query: 97 GQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNI-HPKTKKEYTWTTPPH 155 G + +R + + + +DI G VA HP T + Y W Sbjct: 117 G-GGGWHLYYRHPGHPVLSR--PLTGAPGIDIKADGGLVVAPPSLHPTTGRPYQWAGTR- 172 Query: 156 RFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDK 188 V + P + +T P Sbjct: 173 --PVAEMPPA----LIAAVAADPPMTKPAPPRS 199 >gi|284033434|ref|YP_003383365.1| Bifunctional DNA primase/polymerase [Kribbella flavida DSM 17836] gi|283812727|gb|ADB34566.1| Bifunctional DNA primase/polymerase [Kribbella flavida DSM 17836] Length = 292 Score = 72.2 bits (175), Expect = 3e-10, Method: Composition-based stats. Identities = 20/182 (10%), Positives = 47/182 (25%), Gaps = 10/182 (5%) Query: 46 IDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIP 105 I+ +P G L D+D A+ L + + Sbjct: 66 INAVPGGQLAVRTGAVS-GLAVIDVDPAHGGDASLSDLMTAGLVPRTRHVHTGSGGLHLY 124 Query: 106 FRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNI-HPKTKKEYTWTTPPHRFKVEDTPL 164 +R + + + + +D+ G Y V H +T + Y W D Sbjct: 125 YRHPGQHLPSRPMPN--RPGIDVKADGGYVVLPPSIHHRTHRPYRW-----GTAGNDVVE 177 Query: 165 LSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNG 224 + V + + + ++ + + + A + + Sbjct: 178 MPPALVTACL-PAPTPAESHTHPRTPVATTAGGGISHPDRLLSAHLDAVRNAPTGKRRTT 236 Query: 225 SH 226 + Sbjct: 237 LY 238 >gi|315442842|ref|YP_004075721.1| bifunctional DNA primase/polymerase famiily protein [Mycobacterium sp. Spyr1] gi|315261145|gb|ADT97886.1| bifunctional DNA primase/polymerase famiily protein [Mycobacterium sp. Spyr1] Length = 353 Score = 72.2 bits (175), Expect = 4e-10, Method: Composition-based stats. Identities = 27/210 (12%), Positives = 46/210 (21%), Gaps = 33/210 (15%) Query: 30 PQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILH 89 P + W + G G + D+D + + E H Sbjct: 95 PTIVAWWSG---------RYAGHNIG---GRVPANIVVVDVDPRSG--GDESLAALERQH 140 Query: 90 GTPIVRIG-----QKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNI-HPK 143 G G FR + + +DI Y V HP Sbjct: 141 GRMPDAFGEISGRGDGGRHYWFRAPAGPLSSSR----LGRGIDIKTHSGYVVLPPSIHPD 196 Query: 144 TKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNR 203 T + Y P P + + + + + + Sbjct: 197 TGRPYEKVDGPIT-----PPPAWLAGLLLPEQPKPSTSTRAMTPATARTAHDFFNTGTGT 251 Query: 204 QYTNREITAFLSCFGEEFYNGSHDEWIPVV 233 + + S +G W PV Sbjct: 252 GLSIEKFNENTSWRDVLEPHG----WRPVG 277 >gi|38683726|gb|AAR26902.1| FirrV-1-B27 [Feldmannia irregularis virus a] Length = 575 Score = 71.8 bits (174), Expect = 4e-10, Method: Composition-based stats. Identities = 26/218 (11%), Positives = 72/218 (33%), Gaps = 39/218 (17%) Query: 480 EEVMDYFTRCVGMALLGGN---KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEAS 536 ++++ + VG N + Q ++G+ G+GKST++ +I+ +G + + + Sbjct: 307 QDMVHWLFVFVGRLFFAVNERDQWQVIPFLKGIAGTGKSTVIKVIQKLYGARDIGVLS-N 365 Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNT 596 ++ + + ++ II E + ++ A + M G+ ++ + + + Sbjct: 366 NMEKQFGAST---------IFDKKVFIIPEMKGDFTLDVAVFQSMVTGEEVSLAVKHESP 416 Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLE 654 + + N+ ++ + RR +V F + + + + Sbjct: 417 RVG-KWTVPGIMAGNESPNWQDKSGSISRRVVVFDFPNKVPLETSNPNLFCDIVDSEIPA 475 Query: 655 AKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDT 692 KA + D Sbjct: 476 I-----------------------IRKATMSYQWAVDH 490 >gi|257883931|ref|ZP_05663584.1| prophage Lp4 protein 7 [Enterococcus faecium 1,231,501] gi|257819769|gb|EEV46917.1| prophage Lp4 protein 7 [Enterococcus faecium 1,231,501] Length = 274 Score = 71.8 bits (174), Expect = 4e-10, Method: Composition-based stats. Identities = 35/293 (11%), Positives = 78/293 (26%), Gaps = 46/293 (15%) Query: 12 QAIHNGFKLIPLRLGDKRPQR-LGKWEEQLLSSEKIDKL----PACGFGFVCGVGEQPLY 66 + +G+ + PL G K P + W + S +I++ G + + + Sbjct: 2 ELQKSGWSIYPLSPGTKIPVKGSSGWNDATNDSNQINEWWTEDATRNIGLML--EDHQMM 59 Query: 67 AFDID----SKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNK--------EGIK 114 D+D +++ + + I I F++ Sbjct: 60 VVDLDRHSETRNGVENYKKLASMYDPFPSTYTEITPGKGIHFFFKIPDGVIIQQETGAFA 119 Query: 115 KKKTTESTQ---GHLDILGCGQYFVAYNIHPKT-KKEYTWTTPPHRFKVEDTPLLSEEDV 170 + +DI+ G I + + Y P + + + V Sbjct: 120 DIFGRDDKGKSLSGIDIITKGVPIAPTMIISGSVGRAYE---PIENVSLNNIAPAPDWLV 176 Query: 171 EYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWI 230 L K QEI K+ L + GS ++ + Sbjct: 177 NLLLKKTQEIKTQYRPVAKTGT------------------AKKLDMIVQGAGEGSRNDHL 218 Query: 231 P--VVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTA 281 + H + + I + ++ N + +++ A Sbjct: 219 TKLCGWLLWHGVDNQTLAELIYTANAYNEPPLKDKEVNQIIRSMIKKDLRGKA 271 >gi|13470708|ref|NP_102277.1| hypothetical protein mll0485 [Mesorhizobium loti MAFF303099] gi|14021451|dbj|BAB48063.1| mll0485 [Mesorhizobium loti MAFF303099] Length = 780 Score = 71.8 bits (174), Expect = 4e-10, Method: Composition-based stats. Identities = 77/721 (10%), Positives = 184/721 (25%), Gaps = 96/721 (13%) Query: 24 RLGDKRPQRL--------------GKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFD 69 + G +P ++ W + + + G GFV P + D Sbjct: 27 KPGSPKPAKMPYSANGGRADTTNPATWSDYPTAVRALASGQYAGIGFVFAEN-DPFFVID 85 Query: 70 IDS-KDEKTANTFKD--TFEILHGTPIVRIGQKPKILIPF-RMNKEGIKKKKTTESTQGH 125 +D +D T + + + Q + + F R +K + + Sbjct: 86 LDGCRDATTGELSAEAAAITRMFPNAAWELSQSGEGIHIFGRCDKVALG---GFRNKWAG 142 Query: 126 L-DILGCGQYFVAYNIHPKTKKEYTWTTPPHRF-------KVEDTPLLSEEDVEYLFKFF 177 + ++ + + WT + + + E D ++ Sbjct: 143 WCEFYRTKRFVAFGPGGIQGNIDIDWTNQLAILVPARGVGEQDASQEAVERDPRWIGPDD 202 Query: 178 QEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFL----SCFGEEFYNGSHDEWIPVV 233 E + +K + N Q A S G+ F + S D+ + V Sbjct: 203 DEELLRRFLASTGGTKAKLQASPTNLQLWEAHAAALAQYFPSATGKPFDHSSADQALANV 262 Query: 234 MAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYH 293 +A R + + R S + + + + T Sbjct: 263 LAFW-TGRDYGRIIRLFGR-----SALGRREKWTRRAAYRNSTVNAAVRSCQTVYGGNGQ 316 Query: 294 HGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITA 353 + SD + L W+ + + + + Sbjct: 317 ERRSRQVQENVRIGSDIGADIHTRVMTLEDML----QDLWFIRHSKSGGAIADSR----- 367 Query: 354 SIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGS 413 + L ++ +T + + Q ++ S Sbjct: 368 -----------TLNVLPFATAQREYSASRYEVAASTIDPKTGDFKKRYLPVFNQWEQSPS 416 Query: 414 IFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTG-TPFVEGEPSQEFLDL 472 S+ + +G + E + + P + + + Sbjct: 417 RKSVDVITW--------KPNGAVICEAPESQGAGFNTWRGFQPYRLPDGSQSLVEVWSEH 468 Query: 473 VSGYFESEEVMDYFTRCVGMALLG--GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530 ++ E F + + + ++ I G G++ L +++ Sbjct: 469 LAYLIPIEAERVRFEQWLAHIVQRPEELPQSAYLFITEETGIGRNWLSSVLVRVLRGYVA 528 Query: 531 INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE-----NDEINAAKIKQMTGGD 585 + +++ RL + ++ E ++ K+K M + Sbjct: 529 AGIDIQEMLDGTFNG---------RLSRKLLAVVDEAKAGMQGYGRWSHSEKLKSMINPE 579 Query: 586 CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQ 645 +G + E F N + D RR+ V+ P + + + Sbjct: 580 MRRINEKHGLEFVEWNCCRWLFFSNNWDALPFDASD---RRFNVV--ANPTHRQSPDYYE 634 Query: 646 KLETKYTLEAKKWFLKGVKAYISK-----GLDVDIPEVCLKAKEEERQGTDT-YQAWIDD 699 ++ ++ ++ + G D+ E KA D A+ D+ Sbjct: 635 RIYSQIANPDFISAVRKRLELLDISGFKPGAIPDMNEAKRKALGAMASDLDNLLAAFRDE 694 Query: 700 C 700 Sbjct: 695 W 695 >gi|160941777|ref|ZP_02089104.1| hypothetical protein CLOBOL_06673 [Clostridium bolteae ATCC BAA-613] gi|158435274|gb|EDP13041.1| hypothetical protein CLOBOL_06673 [Clostridium bolteae ATCC BAA-613] Length = 102 Score = 71.8 bits (174), Expect = 5e-10, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 29/93 (31%), Gaps = 7/93 (7%) Query: 7 KEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKL----PACGFGFVCGVGE 62 ++ A G + PL K P +++ +IDK P G G Sbjct: 8 RQYALAYAKVGMAVFPLVPKSKNPATQHGFQDATTDFNQIDKWWMKNPNYNIGIATGQVS 67 Query: 63 QPLYAFDIDS---KDEKTANTFKDTFEILHGTP 92 L D+D K + T +D P Sbjct: 68 GGLIVIDLDIDKEKGKHGNETLRDWEAEQGQLP 100 >gi|9631496|ref|NP_048160.1| ORF MSV089 Putative NTPase, Rabbit fibroma virus C5 (vaccinia D5R) homolog, similar to PIR:G41700 [Melanoplus sanguinipes entomopoxvirus] gi|4049849|gb|AAC97809.1| ORF MSV089 Putative NTPase, Rabbit fibroma virus C5 (vaccinia D5R) homolog, similar to PIR:G41700 [Melanoplus sanguinipes entomopoxvirus] Length = 834 Score = 71.8 bits (174), Expect = 5e-10, Method: Composition-based stats. Identities = 54/326 (16%), Positives = 103/326 (31%), Gaps = 39/326 (11%) Query: 325 LYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPR 384 + D K +K+ W M + + + + ++K S + Sbjct: 354 KFIKDLDIVRKVNKDLKLYWDGMKWMPIIDDMIYGKIALKLLDEYKNTMLLHDKKYVSTK 413 Query: 385 FWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKV 444 ++ R + S ++D +++ + +GI DL+ + Sbjct: 414 YFKEAKVRI------------------LTDLSDSTDTYNTNPYLIQMCNGIFDLKNNIFI 455 Query: 445 KPTKELYITKSTGTP-------------FVEGEPSQEFLDL-VSGYFESEEVMDYFTRC- 489 + K P + + L ++ C Sbjct: 456 YGIEAKKYIKPNYIPLSYKNIEEMSEEEYNNYMENYNMLVTVINNIIPENHKDRKIFECN 515 Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549 + +LL +K + G SGK+T+ L+ FGN ++ I + Sbjct: 516 ISSSLLQISKETIT-FLVGPTKSGKTTIKLLLAALFGNLFLTIP---IIDYVKQHNPHSP 571 Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609 N L +L G + SE+N D+ ++ IK MT + +R+ N + T I Sbjct: 572 NAWLGKLNGKLVCFASESNACDKFDSQTIKHMTER-IIISRVLNSNEGDQ-HNYATQIID 629 Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDKP 635 N + D+A R VI D Sbjct: 630 TNIFPSIDITDNAILERLAVINIDHS 655 >gi|66391796|ref|YP_238520.1| replication protein [Streptococcus phage 2972] gi|56718453|gb|AAW27959.1| replication protein [Streptococcus phage 2972] Length = 271 Score = 71.5 bits (173), Expect = 6e-10, Method: Composition-based stats. Identities = 35/286 (12%), Positives = 66/286 (23%), Gaps = 31/286 (10%) Query: 4 MQWKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLL-SSEKIDK-L---PACGFGFVC 58 M+ + A G+ +IP+ K P + ++ + I + P Sbjct: 1 MEMVDYAINYQRMGYSVIPISKNGKTPLIS--FADKPPMTENDIRRVWRDNPDANIALRT 58 Query: 59 GVGEQPLYAFDID-SKDEKTANTFKDTFE-ILHGTPIVRIGQKPKILIPFRMNKEGIKKK 116 + D+D D ++ L + I I + + Sbjct: 59 ----DTFFVIDVDMHGDVDGLTNLRNWEHARLIPPTLQAITPSGGRHIYLKKDPNHP--I 112 Query: 117 KTTESTQGHLDILGC-GQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFK 175 +DI Y + + +K Y W ++ L K Sbjct: 113 SQNIGMIEGVDIKAHVNNYILVPPSN-NSKGYYEWDKVHSPKD-GSITEAPLALIKVLQK 170 Query: 176 FFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIP--VV 233 E V S T T G + + V Sbjct: 171 MKPEPLSYEVSSFASDSVRSTKTTKLFESI-----------LLGFGDQGGRNNALAEFVG 219 Query: 234 MAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGD 279 + S D++ F + + +EI Sbjct: 220 GLLLRGVDPEITYHLAKMANSNTSEPLDDKEFERTFKSMLDKEIRR 265 >gi|188496353|ref|ZP_03003623.1| conserved hypothetical protein [Escherichia coli 53638] gi|188491552|gb|EDU66655.1| conserved hypothetical protein [Escherichia coli 53638] gi|323171853|gb|EFZ57497.1| nucleoside triphosphatase, D5 family [Escherichia coli LT-68] Length = 241 Score = 71.1 bits (172), Expect = 7e-10, Method: Composition-based stats. Identities = 32/230 (13%), Positives = 72/230 (31%), Gaps = 38/230 (16%) Query: 554 IRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKH 613 +++GSR++++++ + IK++TGGD + Y ++ N Sbjct: 11 AQVVGSRLIVLADQPKYTGEGTG-IKKITGGDPVEINPKYEKRFTAVI-RAVVLATNNNP 68 Query: 614 LFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGL 671 + RR ++ FD + A +D +K+ + L Sbjct: 69 MIFTERAGGVARRRVIFRFDNIVNEAEKDRELPEKI-AAEIPVIIRRLLA---------- 117 Query: 672 DVDIPEVCLKAKEEER---------QGTDTYQA------WIDDCCDI------GENLWEE 710 + PE E+R Q TD ++++ + + Sbjct: 118 NFADPEKARALLLEQRDGDEALAIKQQTDPVIEFCQFLNFLEEARGLMMGGGGDSVKYTT 177 Query: 711 SHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEW 760 +SL + Y + K ++ +K + G + + Sbjct: 178 RNSLYRVYLAFMAYAGRT--KPLNVNDFGKAMKPAAKVYGHEYITRKING 225 >gi|123192617|ref|XP_001282637.1| hypothetical protein [Trichomonas vaginalis G3] gi|121840302|gb|EAX69707.1| hypothetical protein TVAG_545240 [Trichomonas vaginalis G3] Length = 269 Score = 71.1 bits (172), Expect = 7e-10, Method: Composition-based stats. Identities = 42/274 (15%), Positives = 84/274 (30%), Gaps = 25/274 (9%) Query: 477 FESEEVMDYFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLM-NLIKYAF-GNQYVINA 533 E+++V +Y L K + + I G G+GK+T +++ G Sbjct: 1 METKKVYEYILCWFANILQHPSAKNETALIIIGKQGTGKNTFFTDILCKLLEGYSNPNMT 60 Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593 +I N S+ + + + +N+ +K + Y Sbjct: 61 NLENICGKF-------NSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKY 113 Query: 594 GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTL 653 + + + N D RRY+V+ +D + L T Sbjct: 114 KDQRVCENVANFIMVSNNAVPMKLESSD---RRYVVVR-TSEAHMQDTEYFDDLAETLTS 169 Query: 654 EAKKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEES 711 + + IP + ++ + + +ID+ + + Sbjct: 170 DFYNHLFSYFMTLDISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFECLDE 223 Query: 712 HSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK 745 SL SY +Y ++ Y S RT N+K Sbjct: 224 RSLYDSYKQYCQE---YGYMTASKRTFLANVKSL 254 >gi|168229312|ref|YP_001686833.1| orf39 [Streptococcus phage 858] gi|155241707|gb|ABT18027.1| orf39 [Streptococcus phage 858] Length = 271 Score = 71.1 bits (172), Expect = 7e-10, Method: Composition-based stats. Identities = 35/289 (12%), Positives = 87/289 (30%), Gaps = 31/289 (10%) Query: 8 EQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKL----PACGFGFVCGVGEQ 63 E A GF +IP+ KR + K++++ S E++ +L P Sbjct: 6 EYALHYQKLGFSVIPIDKTSKR--AVTKFKDKTFSEEEVKRLWHEHPNANIALRT----T 59 Query: 64 PLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQ 123 + DID + + + +E+ P + P + K + Sbjct: 60 DFFVIDIDVSESEDGFQSLEDWELSKYIPKTLTAKTPSGGRHIFLKKPKGVNISQDIRVK 119 Query: 124 GHLDILG-CGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITV 182 +DI Y + + + Y+W + +E ++ L Sbjct: 120 PGIDIKANNNNYILVAPSNSSKGR-YSW-----NKDTDTIAEAPKEIIDIL--------- 164 Query: 183 PLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIP--VVMAVHHET 240 K ++ P TN +++++ F G + + + + + Sbjct: 165 ---KSEQKHEPLVFSTNYQRNEFSSKTAKLFEQIVFGLGDKGGRNNALASFIGGLLTRKV 221 Query: 241 RGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTS 289 + + + + +++ +E+ +T ++ Sbjct: 222 DIDAVYLLAKIANHYTPESLPQSELDRTFESMVRKELDTKHGNTTTHST 270 >gi|159036858|ref|YP_001536111.1| bifunctional DNA primase/polymerase [Salinispora arenicola CNS-205] gi|157915693|gb|ABV97120.1| Bifunctional DNA primase/polymerase [Salinispora arenicola CNS-205] Length = 290 Score = 70.7 bits (171), Expect = 8e-10, Method: Composition-based stats. Identities = 24/170 (14%), Positives = 42/170 (24%), Gaps = 35/170 (20%) Query: 10 AKQAIHNGFKLIPLRLGDKRPQ-------RLGKW--------------------EEQLLS 42 A + G+ + L KRP + + Sbjct: 6 AMEYAERGWPVFML-ARSKRPLAGCERCDDKRGYDGHDRDICPCLTCHGFYAATTDPDRI 64 Query: 43 SEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKI 102 + ID P G + D+D ++ + L I + Sbjct: 65 TAMIDTAPRGQLALRTGRASD-VVVLDVDPRNGGHRGLATLVADGLAPRTAYVITGSDGL 123 Query: 103 LIPFRMNKEGI-KKKKTTESTQGHLDILGCGQYFVAYNIHP-KTKKEYTW 150 + +R + K +DI G Y V +T + Y W Sbjct: 124 HLFYRHPGTPLAAKVPGV----PGVDIKTDGGYVVLPPSIHQRTGRPYRW 169 >gi|169829605|ref|YP_001699763.1| hypothetical protein Bsph_4172 [Lysinibacillus sphaericus C3-41] gi|168994093|gb|ACA41633.1| conserved hypothetical protein [Lysinibacillus sphaericus C3-41] Length = 861 Score = 70.7 bits (171), Expect = 9e-10, Method: Composition-based stats. Identities = 34/285 (11%), Positives = 68/285 (23%), Gaps = 38/285 (13%) Query: 19 KLIP--LRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDS--KD 74 IP + G+ R W + + G GF+ DID+ ++ Sbjct: 51 TKIPYNVNGGEARSNDANTWSSFVDAVTAARTGRYNGIGFMFTQN-DEYIGIDIDNCYEN 109 Query: 75 EKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQY 134 + L + + + + +S++ ++I G+Y Sbjct: 110 GVFNEVATSVIDSLDSYTEFSPSKTG-VHLIVKGKMPDWVSGTGKKSSKYGIEIYSYGRY 168 Query: 135 FVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPL-------VKD 187 F R + ++E + L +F + Sbjct: 169 FTFTG---------------DRENGNEIQERTDEVAKLLETYFTRDEMAAFANVIIPQGV 213 Query: 188 KKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHD--------EWIPVV-MAVHH 238 S TW N + + + + + S D W + Sbjct: 214 ANKEEDSVTWQRMFNSKQGEKIQAMYRGELIIDNDHSSTDLSLCNYLAFWCNKDFWKMDR 273 Query: 239 ETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKK 283 R S ++ + Y E T K Sbjct: 274 MFRQSGLMRDKWDE-RRGELLYGEITLIKAISTKKETVSEYANKN 317 >gi|330963895|gb|EGH64155.1| bifunctional DNA primase/polymerase [Pseudomonas syringae pv. actinidiae str. M302091] Length = 823 Score = 70.7 bits (171), Expect = 1e-09, Method: Composition-based stats. Identities = 92/704 (13%), Positives = 191/704 (27%), Gaps = 110/704 (15%) Query: 105 PFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDT-- 162 +R + E K+ E G + Q + +IHP T K YTW TPP + Sbjct: 89 LYRADAENYKRFTVFELRAGLV------QDVLPPSIHPGTGKPYTWRTPPDAEGLPVLIS 142 Query: 163 ------------PLLSEEDVEYLFK--------------------------------FFQ 178 +E +L K + Sbjct: 143 DLLNVWNNWDVFKRGAEAACPWLPKDTKPAGKQKPKPKPAPAGGKRPSVIDEFNNCHDVE 202 Query: 179 EITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHH 238 EI K+ ++ T E + + NG ++ V + H Sbjct: 203 EILRSNGYTKRGSKWLYPQSSTGLPGITVDEGKVYSHHAADPLANGHQNDAFEVFCLLEH 262 Query: 239 ETRGSSKGKEIARRWSKQGSTYDEENFN-------YKWDTFDFEEIGDTAKKRSTFTSLF 291 S KE AR Q + + + D + + + A Sbjct: 263 GGDQSKAVKEAARMLGMQSTRPTASDLPPAPTEGSDQPDAAEPAAVSEAAPAPGGGAGEE 322 Query: 292 YHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADT---KAWYKKDKNNVYIWSLTL 348 +++ + L + ++ KK F K W + Sbjct: 323 LTIEQVLRRFALVEGTTHVWDFDKSRAMKKSAFEARVGKLIAKLWLDATDKKLIADDQVK 382 Query: 349 D----KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKS 404 D + A + M+ + + + + + R + + + + Sbjct: 383 DIEQARKMAGKKGGALGMRPTERYVYIDGTKDVWDREKKRRIAEGAVKMALGDTYALWLN 442 Query: 405 TAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGE 464 +++ + + ++ G ++P + Sbjct: 443 SSERRVVDVEHIVFDPTMTKDPSIY------INTFDGLPLEPVNDDV----------ACA 486 Query: 465 PSQEFLDLVSGYFESEEVMDYFTRCVGMAL--LGGNKAQRFIHIRGVGGSGKS-TLMNLI 521 + + + E + TR + L LG + + GSGKS + Sbjct: 487 NLRWLISFLCN--HDEAAALWLTRWLAYPLQHLGAKMDTAVLMHSTMEGSGKSLLFADTF 544 Query: 522 KYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEIN-AAKIKQ 580 +G + ++N + + V + + N KIK Sbjct: 545 GALYGQYAATVGQTQL----------ESNFNAWQSRKMWAVFEEVVSRDQRYNQVGKIKH 594 Query: 581 MTGGDCMTARLNYGNTYSESPASFTPFIVPNKHL-FVRNPDDAWWRRYIVI-PFDKPIAN 638 + G + + N + E+ F+ + + D RR +V+ P + Sbjct: 595 LVTGKTVRMESKFINGWEEANHMNAVFLSNEILPWPISDSD----RRMLVMWPMETLPVA 650 Query: 639 RDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID 698 R + +LE+ W L+ ++ + R G T+ ++ Sbjct: 651 RQKAIGHELESGGVAALYGWLLRVDLGDFNERTRPPSTASRERLVALSRAGWQTF-LYLW 709 Query: 699 DCCDIGENLWEE--SHSLAKSYSEYREQELNYDRKRISTRTVTL 740 ++G LW S L + E+ ++ +S +L Sbjct: 710 RYGELGRGLWAVCLSTDLYALFLEWCQRNKE---HVMSQTKFSL 750 >gi|302544086|ref|ZP_07296428.1| N- superfamily bifunctional DNA primase/polymerase [Streptomyces hygroscopicus ATCC 53653] gi|302461704|gb|EFL24797.1| N- superfamily bifunctional DNA primase/polymerase [Streptomyces himastatinicus ATCC 53653] Length = 303 Score = 70.7 bits (171), Expect = 1e-09, Method: Composition-based stats. Identities = 46/277 (16%), Positives = 71/277 (25%), Gaps = 37/277 (13%) Query: 17 GFKLIPLRLGDKRPQRLG--------------------KWEEQLLSSEKIDKLPAC---- 52 GF++IPL K P + E I L A Sbjct: 22 GFRVIPLTR-AKLPAVRSPHHHDPVPLPCRGACGRLGHGVHDASADPEAIRALFAAAPWA 80 Query: 53 -GFGFVCGVGEQPLYAFDIDSK-----DEKTANTFKDTFEILHGTPIVRIGQKPKILIPF 106 G+G CG L D+D K D A V + + Sbjct: 81 TGYGIACGCAPHHLIGVDLDLKHEPRVDGAAALARLARRYAFAVPHTVTVLTPGGGRHLW 140 Query: 107 RMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLS 166 G+ + +DI G G Y V + P P L Sbjct: 141 LCGPPGLGVPNSAGRIAPGIDIRGTGGYLVGPGSATSRGRYRLAPGSPAWHPAPVPPELL 200 Query: 167 ---EEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYN 223 + V + + + + + + +R A +C E Sbjct: 201 SLVQPPVRTPPERATARPSAVGAPGRDAALVRFVRESQEGRRNDRLFWA--ACRAYEAGA 258 Query: 224 GSHDEWIPVVMAVH-HETRGSSKGKEIARRWSKQGST 259 G + A+H TR ++ + S GST Sbjct: 259 GDELAPALIEAALHTGLTRREAEATVASAARSATGST 295 >gi|227495251|ref|ZP_03925567.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436] gi|226831703|gb|EEH64086.1| conserved hypothetical protein [Actinomyces coleocanis DSM 15436] Length = 737 Score = 70.3 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 46/371 (12%), Positives = 103/371 (27%), Gaps = 51/371 (13%) Query: 7 KEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPAC----GFGFVCGVGE 62 +E A+ NG ++P+ K R ++++ +++++ G + G Sbjct: 29 RETAQLMQANGLSILPIGASKKTTVRWKEYQQIPATTDQVKAWFNSPNNLGVAVITGAVS 88 Query: 63 QPLYAFDIDS-------KDEKTANTFKDTFEILHGT------PIVRIGQ--------KPK 101 L +I+ + K A D + + V IG Sbjct: 89 GNLEMLEIEGAGKHNPNAEPKPAIPLNDIYTAFNARGAGELFTKVFIGNEVWSEYTPSGG 148 Query: 102 ILIPFRMNKEGIKKKKTTESTQGH---LDILGCGQYFVAYNIHPKTKKEYT-----WT-T 152 +R+ + K ++ G G Y + + + W T Sbjct: 149 RHFYYRVQGTPVLKNTKLACNAEGEVVIETRGEGGYSIVAPTPKECHNQPELITSGWELT 208 Query: 153 PPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITA 212 P ++ E+ + + K Q +K S +R Sbjct: 209 STSPTPWAHIPTVNAEEYQMIHKIMQSFNQMPEPEKTVAPASVLMVGQQALIEDDR---- 264 Query: 213 FLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIA-------RRWSKQGSTYDEENF 265 ++ G++F N W ++ + + G+E R + Y Sbjct: 265 WIVRPGDDFNN--KASWSEIIEPYGWQFNYQANGQEFWTRPGKDVREGASATINYAGNGC 322 Query: 266 NYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASR----FSDAYNKAMFSIYKK 321 + + + IG + K + L ++ LA + + + Sbjct: 323 LWVFSSSTCFPIGQSISKFWAYAILNHNGDGKASAKALAEKGYGTPKQQTEQERLAYSVA 382 Query: 322 GHFLYTADTKA 332 +A+ Sbjct: 383 EPACVSAEGGT 393 >gi|289644930|ref|ZP_06476972.1| Bifunctional DNA primase/polymerase [Frankia symbiont of Datisca glomerata] gi|289505239|gb|EFD26296.1| Bifunctional DNA primase/polymerase [Frankia symbiont of Datisca glomerata] Length = 212 Score = 70.3 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 34/119 (28%), Gaps = 13/119 (10%) Query: 46 IDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIP 105 + +PA G L DID + + T V G + Sbjct: 72 LTTIPAGLLAVRTGAVS-GLVVVDIDPGHGGRLDRTL-----MTPTATVATG-GGGWHLY 124 Query: 106 FRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNI-HPKTKKEYTWTTPPHRFKVEDTP 163 ++ + + +DI G Y A HP T + Y W V + P Sbjct: 125 YQHPGTPVLSRPLPGHV--GIDIKADGGYVTAPPSTHPTTGRPYQWVGTR---PVNEMP 178 >gi|78214078|ref|YP_382857.1| hypothetical protein Syncc9605_2574 [Synechococcus sp. CC9605] gi|78198537|gb|ABB36302.1| hypothetical protein Syncc9605_2574 [Synechococcus sp. CC9605] Length = 426 Score = 70.3 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 16/118 (13%), Positives = 35/118 (29%), Gaps = 8/118 (6%) Query: 406 AQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVK-PTKELYITKSTGTPFVEGE 464 + + + + D + +G LDL T +T + + Sbjct: 310 MMEILSEVETYLQHNDWDGN-HLAAFSNGTLDLSTNILRPGHDPSDRLTFAFPYRWDPKA 368 Query: 465 PSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNK-----AQRFIHIRGVGGSGKSTL 517 +L + F ++ F +G + + ++ I G G GK + Sbjct: 369 TCPRWLQFIEQTF-DDDTAKVFRAAIGWTIKPKKQDAPFPFEKAFDIAGPKGCGKGVI 425 >gi|285017019|ref|YP_003374730.1| hypothetical protein XALc_0198 [Xanthomonas albilineans GPE PC73] gi|283472237|emb|CBA14743.1| hypothetical protein XALc_0198 [Xanthomonas albilineans] Length = 822 Score = 70.3 bits (170), Expect = 1e-09, Method: Composition-based stats. Identities = 47/313 (15%), Positives = 94/313 (30%), Gaps = 37/313 (11%) Query: 447 TKELYITKSTGTPFVEGE-PSQEFLDLVSGYFESE----EVMDYFTRCVGMAL-LGGNKA 500 ++ G P +DL+ E E+ D+ R + G K Sbjct: 457 DPQITCNLWGGWPTTPQPGKCDRIIDLLHYLCSEERNSRELFDWVLRWCAYPIQHPGAKM 516 Query: 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSR 560 + + + G G+GK+ I +G I + + + ++ A+ L + Sbjct: 517 KSCVVVHGAQGAGKNLFFEAIMAIYGQYGSILDQNALVDKHNDW----ASRKLFLIADEV 572 Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620 + + + +K + G + + Y E F+ K V D Sbjct: 573 VAQAHRFEQKN-----LLKVLVTGTRIRINPKHIAAYDEVNHCNLVFLSNEKMPVVLEKD 627 Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISK----GLDVDIP 676 D RR+ VI + I + A + E L+ Y+ + Sbjct: 628 D---RRHCVI-WTPSIKEEEYYQAIRDELGNGG------LEAFHDYLLNVDLGNFNPGTR 677 Query: 677 EVCLKAKEEERQ-GTDTYQAWIDDCCDIGENLWEE----SHSLAKSYSEYREQELNYDRK 731 + +AK + D+ +ID + + + Y + K Sbjct: 678 PLMTEAKSDLIDLAKDSPLDFIDALTSWNMPPMKPMPGLTEDWYQVYQRWCVNTGT---K 734 Query: 732 RISTRTVTLNLKQ 744 S + +LK+ Sbjct: 735 PASLKRFIHSLKK 747 >gi|254436894|ref|ZP_05050388.1| hypothetical protein OA307_1764 [Octadecabacter antarcticus 307] gi|198252340|gb|EDY76654.1| hypothetical protein OA307_1764 [Octadecabacter antarcticus 307] Length = 668 Score = 69.9 bits (169), Expect = 2e-09, Method: Composition-based stats. Identities = 44/329 (13%), Positives = 106/329 (32%), Gaps = 33/329 (10%) Query: 422 LDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEE 481 L S+++ + DG+ + +K + + F + P F + + E+ Sbjct: 203 LPSNTQKIVFVDGLAVVNIWEK----PKYRDLTVAPSVFTKENP-DYFDEFLRFVIPVEQ 257 Query: 482 VMDYFTRCVGMALLGGNKAQRFIHIRGVG--GSGKSTLMNLIKYAFGNQYVINAEASDIM 539 + F + L ++ ++ + G+GKS + + + FG ++ Sbjct: 258 DRNMFLDWLAWQLQNEHQKPKWAVMLYSQNQGTGKSVVAEVCEALFGQANATRCSVEQLL 317 Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599 E L +++ + + A IK + +T G ++ Sbjct: 318 ARFNKEI---------LQHKMVIVEEVSIQKGSAKANGIKTLITDPTVTMEAK-GAPSTK 367 Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK---PIANRDASFAQKLETK--YTLE 654 P + + N D RR+ ++ FD ++ + KL + Sbjct: 368 EPILCSFILTTNHLPTWLEESD---RRFFIMNFDHEGYNNGGKEYEYFSKLGEAISEKVA 424 Query: 655 AKKWFLKG-VKAYISKGLDVDIP------EVCLKAKEEERQGT-DTYQAWIDDCCDIGEN 706 +K A +++ L P + + ++ RQ + D + +++ + Sbjct: 425 KSPAAIKALYNALLARDLSDFNPMSLNVQKYSTQIMKDLRQLSPDVVKQNLEELFENNGI 484 Query: 707 LWEESHSLAKSYSEYREQELNYDRKRIST 735 + K + ++E N S Sbjct: 485 HFIPQDLAVKLVKTFAKREANAVTHLFSE 513 >gi|323139022|ref|ZP_08074081.1| Bifunctional DNA primase/polymerase [Methylocystis sp. ATCC 49242] gi|322395682|gb|EFX98224.1| Bifunctional DNA primase/polymerase [Methylocystis sp. ATCC 49242] Length = 713 Score = 69.9 bits (169), Expect = 2e-09, Method: Composition-based stats. Identities = 30/236 (12%), Positives = 52/236 (22%), Gaps = 28/236 (11%) Query: 10 AKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPA---CGFGFVCGVGEQPLY 66 A I G+ IP+ K P W + +S+++ + G V G L Sbjct: 31 ALDYIERGWSPIPIGFRSKAPSLP-GWTDLRISADEASRYFNGAPANIGVVLGQNSSGLS 89 Query: 67 AFDIDSKDEKTANTFKDTFEILHGTPIVRIGQ--KPKILIPFRMNKEGIKKKKTTESTQG 124 D+D + A G+ + N + Sbjct: 90 DVDLDCPEAIAA------APYFLPKTAAIFGRETARASHWLYYTNSASVNLSANVYFDDP 143 Query: 125 H----------LDIL-GCGQYFVAYNI-HPKTKKEYTWTTPPHRFKV----EDTPLLSEE 168 +D+ G V H T + W +D E Sbjct: 144 IAKERGAKARLVDLRLGPKVQTVFPGSAHEDTSEPIAWEPGCDGEPARVECDDLLRRVER 203 Query: 169 DVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNG 224 D + + + + A G+E Sbjct: 204 LAACSLLARHWPAHGARHDARLAVAGVLVRAGFSESESKLFAEALARAVGDEDARD 259 >gi|118581963|ref|YP_903213.1| hypothetical protein Ppro_3564 [Pelobacter propionicus DSM 2379] gi|118504673|gb|ABL01156.1| hypothetical protein Ppro_3564 [Pelobacter propionicus DSM 2379] Length = 734 Score = 69.5 bits (168), Expect = 2e-09, Method: Composition-based stats. Identities = 33/137 (24%), Positives = 54/137 (39%), Gaps = 8/137 (5%) Query: 167 EEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSH 226 +E VE L ++ P ++ +++ + I + + + Sbjct: 240 QEIVEGLKLELRQKNEPKTAIERQHNLGFD--KQIDQEANDTSIQKIEALLNRIDADCGY 297 Query: 227 DEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDE-ENFNYKWDTFDFEEIGDTAKKRS 285 D+W+ V MAV HET GS +G + RWS +GS Y + YKW +F F+E Sbjct: 298 DDWLHVGMAVFHETSGSDEGLALFDRWSSKGSKYKGIKEIEYKWRSFRFDEST-----PV 352 Query: 286 TFTSLFYHHGKLIPKGL 302 T +L G Sbjct: 353 TIGTLIKMARDAGADGF 369 >gi|323138104|ref|ZP_08073177.1| Bifunctional DNA primase/polymerase [Methylocystis sp. ATCC 49242] gi|322396566|gb|EFX99094.1| Bifunctional DNA primase/polymerase [Methylocystis sp. ATCC 49242] Length = 708 Score = 69.5 bits (168), Expect = 2e-09, Method: Composition-based stats. Identities = 24/166 (14%), Positives = 40/166 (24%), Gaps = 24/166 (14%) Query: 10 AKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPA---CGFGFVCGVGEQPLY 66 A I G+ IP+ K P W + +S+++ + G V G L Sbjct: 30 ALDYIERGWSPIPIGFRSKAPSLP-GWTDLRISADEASRYFNGAPANIGVVLGQNSSGLS 88 Query: 67 AFDIDSKDEKTANTFKDTFEILHGTPIVRIGQ--KPKILIPFRMNKEGIKKKKTTESTQG 124 D+D + A G+ + N + Sbjct: 89 DVDLDCPEAIAA------APYFLPKTAAIFGRETARASHWLYYTNSASVNLSANVYFDDP 142 Query: 125 ----------HLDIL-GCGQYFVAYNI-HPKTKKEYTWTTPPHRFK 158 +D+ G V H T + W Sbjct: 143 IAKERGAKARIVDLRLGPKVQTVFPGSAHEDTSEPIAWEPGCDGEP 188 >gi|255323766|ref|ZP_05364892.1| bifunctional DNA primase/polymerase, N- family [Corynebacterium tuberculostearicum SK141] gi|255298946|gb|EET78237.1| bifunctional DNA primase/polymerase, N- family [Corynebacterium tuberculostearicum SK141] Length = 242 Score = 69.5 bits (168), Expect = 2e-09, Method: Composition-based stats. Identities = 26/238 (10%), Positives = 61/238 (25%), Gaps = 27/238 (11%) Query: 33 LGKWEEQLLSSEKIDKL----PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEIL 88 +++ + ++ P G + + DID K + + T + Sbjct: 17 PHGFKDFTSDARRVRSWWSTYPTANIG---ANPPRGVVVIDIDVKHGGIESWAQLTAGHV 73 Query: 89 HGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNI-HPKTKKE 147 + + + FR+ +G K + +T +D+ Y V HP T Sbjct: 74 VPETLTVLTGSGGWHLWFRLPYQG-KLRGQLAATDSGIDVKTHTGYLVMPPSVHPDTGGL 132 Query: 148 Y---TWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQ 204 Y TW L + +++ + + Sbjct: 133 YLLHTWAP---------IAPLPQWLYRHVYAPLRATRPARPGLLTIAPGDGAGLIRVVAE 183 Query: 205 YTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDE 262 + L + + + G++ G S +++ Sbjct: 184 SEEGQRNKVLFWAACRAAEDG----LNIDRQL--IDAGTAAGLPEWEARRTVASAHNK 235 >gi|284040171|ref|YP_003390101.1| ATPase P [Spirosoma linguale DSM 74] gi|283819464|gb|ADB41302.1| P-loop ATPase and inactivated derivatives-like protein [Spirosoma linguale DSM 74] Length = 749 Score = 69.5 bits (168), Expect = 2e-09, Method: Composition-based stats. Identities = 75/578 (12%), Positives = 163/578 (28%), Gaps = 71/578 (12%) Query: 63 QPLYAFDIDSKDEKTANTFKDTFE-ILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTES 121 L + D+D +E + + + + R + + FR++ + + Sbjct: 94 SGLMSVDLDHLEESEIQRVFNLLKSDPYVYAVFRSVGGKGLCVIFRVDYQRWLESF---- 149 Query: 122 TQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPP-HRFKVEDTPLLSEEDVEYLFKFFQEI 180 + I Q+ + W ++ + V Y + F+ Sbjct: 150 --EGIRIYLTEQHGLVMG----------WDASVKDICRLRFVSYDPDTYVNYKAQLFK-- 195 Query: 181 TVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHET 240 K+KK ++ + +Y +I A GS+++W + A+ + Sbjct: 196 -KYPRKEKKEVVKLPYTHTETDIRYVLDQIHARALDL-----TGSYEDWFRIGWAL--IS 247 Query: 241 RGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPK 300 + + I S+ S+YD + + K++ + K +TF G Sbjct: 248 QYGEVARPIFHEVSQYHSSYDSNDCDKKFNYLVATR--PHSIKIATFYYYCRQAGLDTAT 305 Query: 301 GLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLV 360 +++ ++ KK + V + + I+ + Sbjct: 306 PQTKE------VQSLAAMAKKQKVSIPSAVDT--------VLRMTDISEAEARPIIEQVY 351 Query: 361 SMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSD 420 + ED E ++ +S ++N RR S + + + Sbjct: 352 ASTEDFATQETIYEQGVRHIQSHFLFYNEVSRRIESPSGSIFGKWEVNELYNEVLILFDG 411 Query: 421 LLDSSSR-FLGEQDGI---LDLETGQKVKPTKELYITKSTG-TPFVEGEPSQEFLDLVSG 475 L + L ++ + + +E + E Sbjct: 412 KLGRQAFESLLFSRKTVPPINPLKQFFSQHQHNKPTGIISQLASSIETDTGWELDQFA-- 469 Query: 476 YFESEEVMDYFTR--CVGM-ALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532 +YF R +G+ AL N + + G GK+ + Sbjct: 470 ----PSYTEYFLRKWLIGLVALAFDNLCDLMLILTGPQNVGKTEFFRRL----------- 514 Query: 533 AEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLN 592 + + I L + IV + E + + +K + R Sbjct: 515 LPEELRRYFAETKLDRGKDDEILLCENWIVFLDELSGKSFQDVGLMKNLLSSKVFDLREP 574 Query: 593 YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVI 630 YG+T + N + +P RR I I Sbjct: 575 YGSTNVKLKRRAALCGSSNPQAILSDPTG--NRRIIPI 610 >gi|284038164|ref|YP_003388094.1| ATPase P [Spirosoma linguale DSM 74] gi|283817457|gb|ADB39295.1| P-loop ATPase and inactivated derivatives-like protein [Spirosoma linguale DSM 74] Length = 748 Score = 69.1 bits (167), Expect = 3e-09, Method: Composition-based stats. Identities = 79/578 (13%), Positives = 166/578 (28%), Gaps = 71/578 (12%) Query: 63 QPLYAFDIDSKDEKTANTFKDTFE-ILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTES 121 L + D+D +E N + + + + R + + FR++ + + Sbjct: 93 SGLMSVDLDHLEESEINRVFNLLKSDPYVYAVFRSVGGKGLCVIFRVDYQRWLESF---- 148 Query: 122 TQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPP-HRFKVEDTPLLSEEDVEYLFKFFQEI 180 + I Q+ + W ++ E V Y + F+ Sbjct: 149 --EGIRIYLTEQHGLVMG----------WDASVKDICRLRFVSYDPETYVNYKAQLFK-- 194 Query: 181 TVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHET 240 K+KK ++ ++ +Y +I A ++++W + A+ + Sbjct: 195 -KYPRKEKKEVVKLPYTHTESDIRYVLDQIHAKALDL-----TAAYEDWFRIGWAL--IS 246 Query: 241 RGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPK 300 + + I S+ S+YD N + K++ + K +TF G Sbjct: 247 QYGDAARPIFHEVSQYHSSYDPNNCDKKFNYLVATR--PHSIKIATFYYYCRQAGLDTAT 304 Query: 301 GLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLV 360 +++ ++ KK T+ + V + + I I+ + Sbjct: 305 PQTKE------VQSLAAMSKKQKVSITSAVET--------VLKMTEIPEDIARPIIEQVY 350 Query: 361 SMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSD 420 E E ++ ++ ++N RR S + + + Sbjct: 351 ESTEQFDTNETIYEQGVRHIQTHFLFYNEVSRRIESPSGSIFGKWEVNELYNEVLILFDG 410 Query: 421 LLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGT-----PFVEGEPSQEFLDLVSG 475 L + + + K TG +E + E Sbjct: 411 KLGRQAFESLLFSRKTVPPVNPLKQFFYQHQHNKPTGIISQLASSIETDTGWELDQFA-- 468 Query: 476 YFESEEVMDYFTR--CVGM-ALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532 +YF R +G+ AL N + + G GK+ + Sbjct: 469 ----PSYTEYFLRKWLIGLVALAFDNLCDLMLILTGPQNVGKTEFFRRL----------- 513 Query: 533 AEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLN 592 + + I L + IV + E + + +K + R Sbjct: 514 LPEELRRYFAETKLDRGKDDEILLCENWIVFLDELSGKSFQDVGLMKNLLSSKVFDLREP 573 Query: 593 YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVI 630 YG+T + N +R+P RR I I Sbjct: 574 YGSTNVKLKRRAALCGSSNPQAILRDPTG--NRRIIPI 609 >gi|123203098|ref|XP_001284247.1| hypothetical protein [Trichomonas vaginalis G3] gi|121845344|gb|EAX71317.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 261 Score = 69.1 bits (167), Expect = 3e-09, Method: Composition-based stats. Identities = 40/266 (15%), Positives = 79/266 (29%), Gaps = 25/266 (9%) Query: 485 YFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLM-NLIKYAF-GNQYVINAEASDIMQN 541 Y L K + + I G G+GK+T +++ G +I Sbjct: 1 YILCWFANILQHPSAKNETALIIIGKQGTGKNTFFTDILCKLLEGYSNPNMTNLENICGK 60 Query: 542 RPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESP 601 N S+ + + + +N+ +K + Y + Sbjct: 61 F-------NSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCEN 113 Query: 602 ASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLK 661 + + N D RRY+V+ +D + L T + Sbjct: 114 VANFIMVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFS 169 Query: 662 GVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYS 719 + IP + ++ + + +ID+ + + + SL SY Sbjct: 170 YFMTLDISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFVSLDERSLYDSYK 223 Query: 720 EYREQELNYDRKRISTRTVTLNLKQK 745 +Y ++ Y S RT N+K Sbjct: 224 QYCQE---YGYMTASKRTFLANVKSL 246 >gi|126436228|ref|YP_001071919.1| hypothetical protein Mjls_3651 [Mycobacterium sp. JLS] gi|126236028|gb|ABN99428.1| hypothetical protein Mjls_3651 [Mycobacterium sp. JLS] Length = 801 Score = 69.1 bits (167), Expect = 3e-09, Method: Composition-based stats. Identities = 39/288 (13%), Positives = 70/288 (24%), Gaps = 49/288 (17%) Query: 12 QAIHNGF-KLIPLRLGDKRPQRLG--KWEEQLLSSEKIDKL------PACGF-----GFV 57 + G+ +PL G K P G + + +I G Sbjct: 37 RYRLAGWLGTLPLPAGKKNPPPTGYTGHQASHPTRAQIAAWVGDPARRGANICLRLAGID 96 Query: 58 CGVGEQ----PLYAFDIDS-----KDEKTANTFKDTFEILHGTPIVRIGQKP----KILI 104 C + + D+D KD++ + L P I + Sbjct: 97 CAPENRIDAFEVVGIDVDHYAKGGKDKRGGDQLAKLEAELGPLPATWISSARVDGTSGIR 156 Query: 105 PFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFK------ 158 FR+ + + + G V + +P W PP Sbjct: 157 YFRVPAGLTFRGQVAADIECIY--RGYRFAVVWPSTNPDAGGATYWWFPPGTTPNAGGRK 214 Query: 159 -----------VEDTPLLSEEDVEYLFK-FFQEITVPLVKDKKSIIPSKTWTNNNNRQYT 206 D PLL + +++L + P+ D N Sbjct: 215 AWNSHTDVLPKPADLPLLPDAWIDHLTQGRMSATADPIDMDSSVDELYAWADATFNDSAG 274 Query: 207 NREITAFLSCFGEEFYN--GSHDEWIPVVMAVHHETRGSSKGKEIARR 252 + F +V A H R +++G + Sbjct: 275 DAMCGRVEKSFHTLKAEIAEDATSHDKIVKAHWHIYRLAAEGHTGWKD 322 >gi|84517218|ref|ZP_01004573.1| hypothetical protein SKA53_00225 [Loktanella vestfoldensis SKA53] gi|84508893|gb|EAQ05355.1| hypothetical protein SKA53_00225 [Loktanella vestfoldensis SKA53] Length = 260 Score = 69.1 bits (167), Expect = 3e-09, Method: Composition-based stats. Identities = 32/208 (15%), Positives = 60/208 (28%), Gaps = 12/208 (5%) Query: 17 GFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDK----LPACGFGFVCGVGEQPLYAFDIDS 72 G+++ P K+P + I++ P G + D+D Sbjct: 18 GYRVFPSN-QQKKPCVKDPFGRATNDKAGIEELFGNFPNAMTAIPTGPI-NGVTVVDLDV 75 Query: 73 KDE-KTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGC 131 K T + + L T +VR I + FR EG+ + +DI G Sbjct: 76 KGGVNGIETLRGLIDDLPPTMLVRTP-SGGIHLYFRTGSEGL--PSSVGKLGPGIDIRGS 132 Query: 132 GQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSI 191 G +++ K Y W F P + + ++ Sbjct: 133 GANAISFGS-TSQKGMYRWDHSVSGFTWRPAP-MPADLKRLIYAATPSSGTQTTNGYTRS 190 Query: 192 IPSKTWTNNNNRQYTNREITAFLSCFGE 219 + T N E+ + + + Sbjct: 191 DVGERLTTPIVTGQRNSELASRIGYLLK 218 >gi|149012725|ref|ZP_01833701.1| phage protein [Streptococcus pneumoniae SP19-BS75] gi|147763325|gb|EDK70263.1| phage protein [Streptococcus pneumoniae SP19-BS75] Length = 270 Score = 68.8 bits (166), Expect = 4e-09, Method: Composition-based stats. Identities = 36/277 (12%), Positives = 83/277 (29%), Gaps = 25/277 (9%) Query: 7 KEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLL-SSEKIDK----LPACGFGFVCGVG 61 KE A Q GF +IP+ +K P ++ ++ ++ +I++ P Sbjct: 2 KEYALQYQKLGFSVIPINPKNKMPLI--EFADKPAMTASEIERFWDGYPNANIALRT--- 56 Query: 62 EQPLYAFDIDSKDEKTANTFKDTFEILH---GTPIVRIGQKPKILIPFRMNKEGIKKKKT 118 + DID ++ +E L+ T + K L+ F+ + E Sbjct: 57 -TNFFVIDIDKHGKENGFESLKKWEHLNLIEPTLQAKTASGGKHLLYFKRDDEP---ITQ 112 Query: 119 TESTQGHLDILGC-GQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFF 177 +DI Y + + + Y W + T + D+ K Sbjct: 113 MIKFLPGVDIKAHENNYIIVAPSATENGQ-YEW--DLEKSAEGGTIVTPSRDLIRAIKKQ 169 Query: 178 QEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIP--VVMA 235 T D K + + + ++ ++ + G ++ + V Sbjct: 170 YGKTHGYRYDGKDGLRDLARRSQTRDRTQTTDLFETIALGFGD--EGGRNDKLAKFVGGL 227 Query: 236 VHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTF 272 ++ + + + E+ ++ Sbjct: 228 LYRAVDDGVVVQLARLANANSPNPLPEKEMMRTIESM 264 >gi|115534315|ref|YP_783844.1| hyphotheical protein [Streptomyces laurentii] gi|23978907|dbj|BAC21270.1| hyphotheical protein [Streptomyces laurentii] Length = 250 Score = 68.8 bits (166), Expect = 4e-09, Method: Composition-based stats. Identities = 27/173 (15%), Positives = 44/173 (25%), Gaps = 26/173 (15%) Query: 35 KWEEQLLSSEK-----IDKLPACGFGFVCGVGEQPLYAFDID----SKDEKTANTFKDTF 85 KWE++ + + + P G G L D+D + Sbjct: 2 KWEDRATTDRERIAGAWGQGP-FNVGLATGP--SGLVVVDLDMPKEGASGLSGAEVFAAL 58 Query: 86 EILHGTP---IVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHP 142 G P R G + GI+ + +D G Y VA Sbjct: 59 CERAGQPLPATFRAGTASGGEHLYFTAPVGIRLGNSAGLLGQLVDTRAWGGYVVAPGSIT 118 Query: 143 KTKKEYTWTTPPHRFKVEDTPL--LSEEDVEYLFKFFQEITVPLVKDKKSIIP 193 YT ++D P+ L +E L + + Sbjct: 119 P-GGVYTV--------LDDAPVLPLPSWLLEALTARQKSSRPRGGVPAFPAVS 162 >gi|313667338|ref|YP_004049739.1| hypothetical protein Ocepr_2371 [Oceanithermus profundus DSM 14977] gi|313153969|gb|ADR37819.1| hypothetical protein Ocepr_2371 [Oceanithermus profundus DSM 14977] Length = 282 Score = 68.8 bits (166), Expect = 4e-09, Method: Composition-based stats. Identities = 23/252 (9%), Positives = 57/252 (22%), Gaps = 24/252 (9%) Query: 32 RLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHG- 90 W + + G GFV + D+D + E + Sbjct: 44 NPDSWSSYAHAVFVAQRGGFDGIGFVF--AGDGIVGVDLDGVRDPETGRLDAWAEEIVVR 101 Query: 91 -TPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYT 149 + + L F + +G +++ ++F Sbjct: 102 LGSFAEVSPSGRGLHIFLR-----GEIPGERRRRGPVEVYEKDRFFTFTGAVV------- 149 Query: 150 WTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNRE 209 P + P + QE P + S R + ++ Sbjct: 150 ---PGAPHTINADPDALAWLYQTYLDPPQERKPPSSRSLTSTYEPADDQVVLERMFRSKH 206 Query: 210 ITAFLSCFGEEFYNGSHDEWIPVVMAVHH-----ETRGSSKGKEIARRWSKQGSTYDEEN 264 + + + + +A + ++ + RR +D + Sbjct: 207 GERNRALWEGRWQELGYASQSEADLAFCNALAVFTGGDLAQMDRLFRRSGLMREKWDRKT 266 Query: 265 FNYKWDTFDFEE 276 + + Sbjct: 267 GGETYGEMTLKR 278 >gi|317501014|ref|ZP_07959222.1| hypothetical protein HMPREF1026_01165 [Lachnospiraceae bacterium 8_1_57FAA] gi|316897592|gb|EFV19655.1| hypothetical protein HMPREF1026_01165 [Lachnospiraceae bacterium 8_1_57FAA] Length = 145 Score = 68.4 bits (165), Expect = 4e-09, Method: Composition-based stats. Identities = 16/117 (13%), Positives = 40/117 (34%), Gaps = 5/117 (4%) Query: 556 LMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLF 615 + G + ++ N +K+ G D + G + N+ Sbjct: 1 MYGKLLNACADIPCKAMENTDVLKKAVGEDTLIYEKK-GQDAIHFHSYAKLLFSTNEMPQ 59 Query: 616 -VRNPDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISK 669 + N DA++RR +++ ++ + +D +K + A + +K + Sbjct: 60 NLENKSDAFYRRLLILDMNRVVKSGEKDLHLKEK-VQAESDYAIHMAMIALKNLYEQ 115 >gi|28379033|ref|NP_785925.1| prophage Lp3 protein 7 [Lactobacillus plantarum WCFS1] gi|28271871|emb|CAD64776.1| prophage Lp3 protein 7 [Lactobacillus plantarum WCFS1] Length = 266 Score = 68.4 bits (165), Expect = 4e-09, Method: Composition-based stats. Identities = 25/195 (12%), Positives = 51/195 (26%), Gaps = 22/195 (11%) Query: 8 EQAKQAIHNGFKLIPLRLGDKRPQR-LGKWEEQLLSSEKIDKL----PACGFGFVCGVGE 62 ++A + G+ + PL K P + + +++ + I P G Sbjct: 8 DKAIELAQQGYSVYPLIENMKNPPKGVAGYKDATIDQGTIFAWFENHPNYNLGLRL--DL 65 Query: 63 QPLYAFDIDSKD-----EKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKK 117 L D+D D + + L + + + ++K Sbjct: 66 SDLLVVDVDMHDQTKNGRNSLAQLFKQGQTLPNDTYIERTANGGVHYFLKYAGAKVRKV- 124 Query: 118 TTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFF 177 +D+L + V K Y P + D + V+ L Sbjct: 125 ---DVWPGIDLLSD--FTVIAPSEI-NGKPYE---PLDDRTLTDIKPAPQWLVDKLAGQK 175 Query: 178 QEITVPLVKDKKSII 192 T + Sbjct: 176 VNWTSEHAYTTRQKK 190 >gi|229551170|ref|ZP_04439895.1| bifunctional DNA primase/polymerase [Lactobacillus rhamnosus LMS2-1] gi|229315462|gb|EEN81435.1| bifunctional DNA primase/polymerase [Lactobacillus rhamnosus LMS2-1] Length = 278 Score = 68.4 bits (165), Expect = 5e-09, Method: Composition-based stats. Identities = 25/177 (14%), Positives = 50/177 (28%), Gaps = 26/177 (14%) Query: 13 AIHNGFKLIPLRLGDKRPQR-LGKWEEQLLSSEKIDKL----PACGFGFVCGVGEQPLYA 67 +GF + PL G + P + +++ E+ K P G + Sbjct: 14 YQQHGFAVYPLAPGTRTPLKGSHGYKDATKDPEQAKKWWGEHPNYNIGLGL----DGVLV 69 Query: 68 FDIDSKDE---KTANTFKDTFEI----LHGTPIVRIGQKPKILIPFRMNKEGI----KKK 116 FDID + ++T + I + I F KE Sbjct: 70 FDIDVGHKSGTNGSDTLAKLCADGRAGQISSSYAEISPNGGLHIFFTYPKELKLTSRSDL 129 Query: 117 KTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYL 173 + + LD + G + + P K+ + + ++ + Sbjct: 130 FSKNGEKTGLDYVATG--VPVFPSIRENGIY----QPLRGRKITKLAPVPQWLLDEI 180 >gi|15805557|ref|NP_294253.1| hypothetical protein DR_0530 [Deinococcus radiodurans R1] gi|6458224|gb|AAF10112.1|AE001911_7 hypothetical protein DR_0530 [Deinococcus radiodurans R1] Length = 891 Score = 68.0 bits (164), Expect = 5e-09, Method: Composition-based stats. Identities = 34/205 (16%), Positives = 52/205 (25%), Gaps = 28/205 (13%) Query: 19 KLIPLRLGDKRP------QRLGKWEEQLLSSEK-IDKLPACGFGFVCGVGEQPLYAFDID 71 L+P+ G K P +W ++ + + P G G + + D D Sbjct: 20 ALVPVPQGTKGPRAKGWDSDPAQWITTPSAAREYLTAHPGAGVGLLHSESQTAALDIDHD 79 Query: 72 SKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEG--------IKKKKTTESTQ 123 A D +L P G+K FR+ + Sbjct: 80 GAALALAAVGVDLAAVLASNPYRVRGKKG-EKPIFRVPDGLSLNRHALSWPDPSGKKGPG 138 Query: 124 GH------LDILG-CGQYFVAYNI-HPKTKKEYTWTTP----PHRFKVEDTPLLSEEDVE 171 G ++ G G V HP T + Y WT P LLS Sbjct: 139 GRPAPLTIFELRGGAGVQDVMPPSVHPDTGRPYEWTGPVPASLGELPELPPELLSLWQRW 198 Query: 172 YLFKFFQEITVPLVKDKKSIIPSKT 196 P + + Sbjct: 199 AALLPVMRAACPWAPAELPAPAERD 223 >gi|75761156|ref|ZP_00741147.1| Primase [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74491355|gb|EAO54580.1| Primase [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 345 Score = 68.0 bits (164), Expect = 5e-09, Method: Composition-based stats. Identities = 43/305 (14%), Positives = 84/305 (27%), Gaps = 29/305 (9%) Query: 4 MQWKEQAKQAIHNGFKLIPLRLGDK--RPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVG 61 QW K+ + +P ++ K + W + EK + G GFV Sbjct: 16 SQWVLWRKEKRNGKLTKVPYQVNSKMAQANNRNTWSSFEMVVEKYKQGGYDGIGFVF-SK 74 Query: 62 EQPLYAFDID--SKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTT 119 + D+D D + + +D + + I I + Sbjct: 75 QDDYVGIDLDKCCVDGELSELARDIM-SIVPSYTEYSPSGNGIHIITKGKIPLRGPGTGK 133 Query: 120 ESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQE 179 + L++ +YF E+ +L ++ +E K Sbjct: 134 KVPSIGLEVYRHTRYFTFTGDSINNN--------HVEESTENLKVLFQKYIEK--KEVPA 183 Query: 180 ITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDE----------- 228 + K S + + + R + ++ A F NG H Sbjct: 184 ASKIPSVSKGSNRSNLSNSELWERMFNSKNGGAIKDLFCGVLINGDHSSTDMALANHLAF 243 Query: 229 WIPVVMA-VHHETRGSSKGKEIARRW-SKQGSTYDEENFNYKWDTFDFEEIGDTAKKRST 286 W A + R S+ ++ + S G TY E + + + A Sbjct: 244 WTDKDAAKMDTMFRESALMRDKWDKQHSSDGLTYGEMTIDRAISSTHNSISNNNASNNKE 303 Query: 287 FTSLF 291 + Sbjct: 304 NEKIL 308 >gi|145224477|ref|YP_001135155.1| hypothetical protein Mflv_3896 [Mycobacterium gilvum PYR-GCK] gi|145216963|gb|ABP46367.1| hypothetical protein Mflv_3896 [Mycobacterium gilvum PYR-GCK] Length = 692 Score = 68.0 bits (164), Expect = 6e-09, Method: Composition-based stats. Identities = 40/246 (16%), Positives = 59/246 (23%), Gaps = 38/246 (15%) Query: 8 EQAKQAIHNGFKLIPLRL-------------------GDKRPQ-RLGKWEEQLL----SS 43 ++A+ GF + P K P G W Sbjct: 16 QKAQHLHQRGFHVFPTDHPDQRSCIGLHGPNNPCDGHRGKHPAVAWGTWAVNPTPQMIDV 75 Query: 44 EKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKIL 103 D+ G CG L D D D + L T V G+ Sbjct: 76 AWKDRHGLANIGIACGP--SGLVVLDEDG-DGEVTRWCVTYGVTLPDTYEVTTGR--GRH 130 Query: 104 IPFRMN--KEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVED 161 + F + + I LD+ G G Y V + YT + Sbjct: 131 LYFAWDHTAQRIGNVPKAVKDFA-LDVRGDGGYAVGEGSQHVSGAIYT------GNGLPA 183 Query: 162 TPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEF 221 PL + L + + T+ N + RE L + Sbjct: 184 APLPVQVAEILLAAQTKRSEPVSGPTESPWDTFAGGTDPNTTKIGFRERHNALIAYAGRL 243 Query: 222 YNGSHD 227 N D Sbjct: 244 RNTGLD 249 >gi|313576839|gb|ADR67014.1| bacteriophage P4 DNA primase [Klebsiella pneumoniae subsp. pneumoniae] Length = 521 Score = 68.0 bits (164), Expect = 6e-09, Method: Composition-based stats. Identities = 21/107 (19%), Positives = 37/107 (34%), Gaps = 8/107 (7%) Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLDLVSGYF- 477 R +G ++G+LD +G +K ++ F + F + Sbjct: 411 RRLIGFRNGVLDTSSGIFSPHSKSHWLRTLCDVDFTPPVEGETLETHAPNFWRWLDRAAS 470 Query: 478 ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524 + + + M L Q F+ + G GGSGKS L + Sbjct: 471 GNPTKRNVILAALFMVLANRYDWQLFLEVTGPGGSGKSILAEIATML 517 >gi|256824525|ref|YP_003148485.1| DNA primase/polymerase-like protein [Kytococcus sedentarius DSM 20547] gi|256687918|gb|ACV05720.1| DNA primase/polymerase-like protein [Kytococcus sedentarius DSM 20547] Length = 317 Score = 68.0 bits (164), Expect = 6e-09, Method: Composition-based stats. Identities = 26/198 (13%), Positives = 58/198 (29%), Gaps = 17/198 (8%) Query: 10 AKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKL----PACGFGFVCGVGEQPL 65 A++ G + P G KRP + + E+I P G + Sbjct: 25 ARELAAVGVPVFPCLSGGKRPLTTHGFHDATTDLERITAWWREHPEANLAVPTGAASGVV 84 Query: 66 YAFD-----IDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120 +D G + + + + +++++ + Sbjct: 85 VVDVDVHGPVDGYRAFERAHRAGLV---SGWWQLLVATPSAGMHAY-YPATPDREQRSWQ 140 Query: 121 STQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEI 180 + + +D G G Y V T + +R + ++ S D + L +F Sbjct: 141 AARAGIDFRGDGGYIVVPPSTVSTGG----KSAGYRVRRTNSGASSVLDSDQLREFLDPR 196 Query: 181 TVPLVKDKKSIIPSKTWT 198 P + + + S + Sbjct: 197 PTPAGRSGRKVERSADVS 214 >gi|302382356|ref|YP_003818179.1| hypothetical protein Bresu_1244 [Brevundimonas subvibrioides ATCC 15264] gi|302192984|gb|ADL00556.1| hypothetical protein Bresu_1244 [Brevundimonas subvibrioides ATCC 15264] Length = 525 Score = 68.0 bits (164), Expect = 7e-09, Method: Composition-based stats. Identities = 37/186 (19%), Positives = 68/186 (36%), Gaps = 25/186 (13%) Query: 429 LGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF--ESEEVMDYF 486 LG DG L+L G +T T F +F + V+ + E+ ++ Sbjct: 127 LGLPDGALNLFKG------------FTTKTAFG--GDYSKFKEHVNQNLAGGNVELSEWM 172 Query: 487 TRCVGMA-LLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545 + L + + +RG GSGKST N++ G QY +++ + R Sbjct: 173 WDFMADIFLNPTKRPPVMLILRGSKGSGKSTFSNVLARLIGEQYCPVIDSAQGLTGRFAG 232 Query: 546 AGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFT 605 + L+ + + D + A++K + + +G T + PA F Sbjct: 233 QTFSRAMLLVVEEAYFA-------GDLASEARLKSLVTSPRLPVEEKHGATTMQ-PAYFR 284 Query: 606 PFIVPN 611 + N Sbjct: 285 ICMTAN 290 >gi|124378239|ref|YP_001029432.1| GfV-D3-ORF2 [Glypta fumiferanae ichnovirus] gi|124270646|dbj|BAF45567.1| GfV-D3-ORF2 [Glypta fumiferanae ichnovirus] Length = 323 Score = 68.0 bits (164), Expect = 7e-09, Method: Composition-based stats. Identities = 34/171 (19%), Positives = 65/171 (38%), Gaps = 8/171 (4%) Query: 476 YFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVG--GSGKSTLMNLIKYAFGNQYVINA 533 F + D+F + L G + F+ + +GK++L L+K FG+ Y+ N+ Sbjct: 1 MFPEQSERDWFLSFIARFLNGKRADEPFLILIDEHEDRTGKTSLAKLLKAVFGSYYLKNS 60 Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARL-- 591 + +R + + L L R+++ + D +N IK +TG + Sbjct: 61 KMVIAGGSR--DNNEYAGGLYGLNEKRLLLADGLQKTDTLNCGFIKAITGDCNYYIKHVN 118 Query: 592 NYGNTYSESPASFTPFIVPN--KHLFVRNPDDAWWRRYIVIPFDKPIANRD 640 + T E IV N D+ + ++ +V P +D Sbjct: 119 KFFRTEFEFIVQAGLVIVANENNMPIFDKNDENFLKKMVVCPLRSRFVTQD 169 >gi|292491099|ref|YP_003526538.1| hypothetical protein Nhal_0978 [Nitrosococcus halophilus Nc4] gi|291579694|gb|ADE14151.1| conserved hypothetical protein [Nitrosococcus halophilus Nc4] Length = 810 Score = 67.6 bits (163), Expect = 7e-09, Method: Composition-based stats. Identities = 60/359 (16%), Positives = 110/359 (30%), Gaps = 38/359 (10%) Query: 447 TKELYITKSTGTPFVEGE-PSQEFLDLVSGYFESEE-----VMDYFTRCVGMAL-LGGNK 499 ++ G P Q L+L+ E ++D+ + + + G K Sbjct: 452 DTQIKCNLWEGWPTEPKAGNCQSLLELLEYMCGRENQNSQALLDWVLKWLAYPIQNPGAK 511 Query: 500 AQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGS 559 + + I G G+GK+ I +G I + S + A K + Sbjct: 512 MRTALVIHGPQGTGKNLFFECIMQIYGRYGRII-DQSAVEDKFNDWASKKLFLIAD---- 566 Query: 560 RIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNP 619 +I+ + N K+K + G+ + Y E F+ + V Sbjct: 567 --EVIARSELFHIKN--KLKGLITGEWIRINPKNIGAYEERNHVNMVFLSNERMPVVLEE 622 Query: 620 DDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVC 679 DD RR+ +I + + +EA + G + Sbjct: 623 DD---RRHCIIWTPEKLPKAVYDEVAAEIRDGGVEALH---HYLLNLDLTGFNEHTRPPH 676 Query: 680 LKAKEEERQ-GTDTYQAWIDDCCDIGENLW-------EESHSLAKSYSEYREQELNYDRK 731 +AK+E + DT + D + + + S L Y + L R Sbjct: 677 TEAKQELIELSMDTCTEFYHD---LADGEFGDLHQWPVLSDDLFDLYRSWCS--LRGHRS 731 Query: 732 RISTRTVTLNLKQK-GFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDNSNIIDFKR 789 S R L +K G K+ ++R L + A + D S + + R Sbjct: 732 PASQRRFNDILIRKHGAQKLRKQIMTPAGRSNQRTF--LIFRDAVDKPPDESEAVWYGR 788 >gi|327383939|gb|AEA55415.1| Bifunctional DNA primase/polymerase [Lactobacillus casei LC2W] gi|327387121|gb|AEA58595.1| Bifunctional DNA primase/polymerase [Lactobacillus casei BD-II] Length = 270 Score = 67.6 bits (163), Expect = 7e-09, Method: Composition-based stats. Identities = 24/177 (13%), Positives = 45/177 (25%), Gaps = 26/177 (14%) Query: 13 AIHNGFKLIPLRLGDKRP-QRLGKWEEQLLSSEKIDKL----PACGFGFVCGVGEQPLYA 67 +GF + PL + P +++ E+ K P G + Sbjct: 11 YQQHGFAVYPLAPETRTPLAGSHGYKDATKDPEQAKKWWGEHPNYNIGLGL----DGVLV 66 Query: 68 FDID--SKDEKTANTFKDTFEI-----LHGTPIVRIGQKPKILIPFRMNKEGI----KKK 116 FDID K N + + + I F KE Sbjct: 67 FDIDMGHKSGANGNETLAKLCADGRAGQIPSTYIETTPNGGLHIFFTYPKELKLTSRSDL 126 Query: 117 KTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYL 173 + + LD + G + + P K+ + ++ + Sbjct: 127 FSKNGEKTGLDYVATG--VPVFPSIRENGMY----QPLKGHKITKLAPAPQWLLDEI 177 >gi|191639829|ref|YP_001988995.1| hypothetical protein LCABL_30870 [Lactobacillus casei BL23] gi|190714131|emb|CAQ68137.1| Putative uncharacterized protein ps609 [Lactobacillus casei BL23] Length = 273 Score = 67.6 bits (163), Expect = 7e-09, Method: Composition-based stats. Identities = 24/177 (13%), Positives = 45/177 (25%), Gaps = 26/177 (14%) Query: 13 AIHNGFKLIPLRLGDKRP-QRLGKWEEQLLSSEKIDKL----PACGFGFVCGVGEQPLYA 67 +GF + PL + P +++ E+ K P G + Sbjct: 14 YQQHGFAVYPLAPETRTPLAGSHGYKDATKDPEQAKKWWGEHPNYNIGLGL----DGVLV 69 Query: 68 FDID--SKDEKTANTFKDTFEI-----LHGTPIVRIGQKPKILIPFRMNKEGI----KKK 116 FDID K N + + + I F KE Sbjct: 70 FDIDMGHKSGANGNETLAKLCADGRAGQIPSTYIETTPNGGLHIFFTYPKELKLTSRSDL 129 Query: 117 KTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYL 173 + + LD + G + + P K+ + ++ + Sbjct: 130 FSKNGEKTGLDYVATG--VPVFPSIRENGMY----QPLKGHKITKLAPAPQWLLDEI 180 >gi|291335468|gb|ADD95080.1| hypothetical protein [uncultured phage MedDCM-OCT-S04-C348] Length = 243 Score = 67.6 bits (163), Expect = 7e-09, Method: Composition-based stats. Identities = 17/99 (17%), Positives = 27/99 (27%), Gaps = 7/99 (7%) Query: 213 FLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTF 272 +D WI V ++H + WSKQ S Y E + +W +F Sbjct: 6 EAMWAMPPEAADDYDIWITVGQSLHSVDD---TLLDPWDEWSKQSSKYKEGECHRRWLSF 62 Query: 273 DFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAY 311 + L +G + D Sbjct: 63 SKAGGRGIG----SLFHLAKENGWQPDQTYKGLNVDDTL 97 >gi|301066074|ref|YP_003788097.1| prophage Lp3 protein 7-like protein [Lactobacillus casei str. Zhang] gi|300438481|gb|ADK18247.1| prophage Lp3 protein 7-like protein [Lactobacillus casei str. Zhang] Length = 278 Score = 67.6 bits (163), Expect = 8e-09, Method: Composition-based stats. Identities = 22/196 (11%), Positives = 47/196 (23%), Gaps = 26/196 (13%) Query: 13 AIHNGFKLIPLRLGDKRP-QRLGKWEEQLLSSEKIDKL----PACGFGFVCGVGEQPLYA 67 +GF + PL + P +++ E+ K P G + Sbjct: 14 YQQHGFAVYPLAPATRTPINGSHGYKDATKDPEQAKKWWGEHPNYNIGLGL----DGVLV 69 Query: 68 FDID---SKDEKTANTFKDTFEI----LHGTPIVRIGQKPKILIPFRMNKEG----IKKK 116 FDID + + + + + I F KE Sbjct: 70 FDIDMGHKSEANGNESLAKLSAEGRADQIPSTYIETTPNGGLHIFFTYPKELQLTSRSDL 129 Query: 117 KTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKF 176 + + LD + G + + P K+ + + ++ + + Sbjct: 130 FSKNGEKTGLDYIATG--VPVFPSIRENGMY----QPLKGHKITKLAPVPQWLLDEIQRV 183 Query: 177 FQEITVPLVKDKKSII 192 Sbjct: 184 SHPNPQLGGSTVYRGK 199 >gi|258509888|ref|YP_003172639.1| phage-related DNA replication protein [Lactobacillus rhamnosus GG] gi|257149815|emb|CAR88788.1| Phage-related protein, DNA replication [Lactobacillus rhamnosus GG] gi|259651150|dbj|BAI43312.1| hypothetical phage protein [Lactobacillus rhamnosus GG] Length = 275 Score = 67.6 bits (163), Expect = 8e-09, Method: Composition-based stats. Identities = 23/177 (12%), Positives = 46/177 (25%), Gaps = 26/177 (14%) Query: 13 AIHNGFKLIPLRLGDKRP-QRLGKWEEQLLSSEKIDKL----PACGFGFVCGVGEQPLYA 67 +GF + PL + P +++ E+ K P G + Sbjct: 11 YQQHGFAVYPLAPETRTPLAGSHGYKDATKDPEQAKKWWGEHPNYNIGLGL----DGVLV 66 Query: 68 FDID---SKDEKTANTFKDTFEI----LHGTPIVRIGQKPKILIPFRMNKEGI----KKK 116 FDID +T + + + I F KE Sbjct: 67 FDIDMGHKSGANGNDTLAKLSAEGRADQIPSTYIETTPNGGLHIFFTYPKELKLTSRSDL 126 Query: 117 KTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYL 173 + + LD + G + + P K+ + + ++ + Sbjct: 127 FSKNGEKTGLDYIATG--VPVFPSIRENGMY----QPLKGHKITKLAPVPQWLLDEI 177 >gi|229821005|ref|YP_002882531.1| Bifunctional DNA primase/polymerase [Beutenbergia cavernae DSM 12333] gi|229566918|gb|ACQ80769.1| Bifunctional DNA primase/polymerase [Beutenbergia cavernae DSM 12333] Length = 206 Score = 67.6 bits (163), Expect = 9e-09, Method: Composition-based stats. Identities = 20/97 (20%), Positives = 30/97 (30%), Gaps = 3/97 (3%) Query: 53 GFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRI-GQKPKILIPFRMNKE 111 G G + DID A+ E P R+ + + M + Sbjct: 109 NVGLATGRAS-GFWVLDIDPAKGGAASIKALEAEHGALAPTRRVRTGSGGWHLYYAMPLD 167 Query: 112 GIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEY 148 G + + +D+ G G Y VA TK Y Sbjct: 168 GSDVRNSQGLVAPGIDVRGTGGYVVAPPSV-STKGAY 203 >gi|323139963|ref|ZP_08074982.1| hypothetical protein Met49242DRAFT_4370 [Methylocystis sp. ATCC 49242] gi|322394781|gb|EFX97363.1| hypothetical protein Met49242DRAFT_4370 [Methylocystis sp. ATCC 49242] Length = 176 Score = 67.6 bits (163), Expect = 9e-09, Method: Composition-based stats. Identities = 39/182 (21%), Positives = 59/182 (32%), Gaps = 25/182 (13%) Query: 1 MPVMQWKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWE--EQLLSSEKIDKLPAC----GF 54 M + E A GF P+ LG K + W+ + L E + G Sbjct: 1 MTARIFAEHAPLYRAAGFWPRPVSLGSKA-CHVRDWQKPDGELPPETLQSWLKSHCYLGI 59 Query: 55 GFVCGVGEQP---LYAFDIDSKDEKTANTFKDTFEILHG-TPIVRIGQKPKILIPFRMNK 110 G + G L A DID + + L G P R G+K ++ R+ Sbjct: 60 GLLMGSPFPDGTTLGALDIDH------DAYTRVGHALLGDPPCCRFGRKGMVVFV-RVRG 112 Query: 111 EG----IKKKKTTESTQGHL-DILGCGQ-YFVAYNIHPKTKKEYTWTT-PPHRFKVEDTP 163 E + K G + + L + V IH +T + Y W P Sbjct: 113 EPRNLEFRVKGDVGKRFGKVAECLFSKKLCVVPPTIHRETGRPYRWVGQSLLDVDFNSLP 172 Query: 164 LL 165 L+ Sbjct: 173 LV 174 >gi|84514718|ref|ZP_01002082.1| hypothetical protein SKA53_10869 [Loktanella vestfoldensis SKA53] gi|84511769|gb|EAQ08222.1| hypothetical protein SKA53_10869 [Loktanella vestfoldensis SKA53] Length = 454 Score = 67.2 bits (162), Expect = 9e-09, Method: Composition-based stats. Identities = 36/214 (16%), Positives = 66/214 (30%), Gaps = 19/214 (8%) Query: 469 FLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGV--GGSGKSTLMNLIKYAFG 526 F D + ++ D F + L + + + G+GKSTL ++ FG Sbjct: 110 FNDFIEYVIPNDAERDVFLDWLVWVLRYEAQKPAWAIMLYSEKQGTGKSTLAEVLIELFG 169 Query: 527 NQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDC 586 + L +++ + A IK + D Sbjct: 170 RLNTGRVN--------GVNKLIGRFNKEVLENKLVIVEEVEVKRGSPQANAIKSLVTEDS 221 Query: 587 MTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP---IANRDASF 643 + Y + + N D RR+ ++ FD +D + Sbjct: 222 IMVEAKLMPVYVQQIHCAFL-MTTNHLPLWLEESD---RRFFILNFDHHGYANGGKDYNR 277 Query: 644 AQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPE 677 KL L+ KK +GVK + + D+P+ Sbjct: 278 FTKLVGAVKLQIKKP--EGVKGIYDQLMRRDVPQ 309 >gi|228904575|ref|ZP_04068651.1| hypothetical protein bthur0014_57110 [Bacillus thuringiensis IBL 4222] gi|228855056|gb|EEM99639.1| hypothetical protein bthur0014_57110 [Bacillus thuringiensis IBL 4222] Length = 810 Score = 67.2 bits (162), Expect = 1e-08, Method: Composition-based stats. Identities = 73/549 (13%), Positives = 143/549 (26%), Gaps = 64/549 (11%) Query: 31 QRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDID--SKDEKTANTFKDTFEIL 88 W + EK + G GFV + D+D D + + +D + Sbjct: 5 NNRNTWSSFEMVVEKYKQGGYDGIGFVF-SKQDDYVGIDLDKCCVDGELSELARDIM-SI 62 Query: 89 HGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEY 148 + I I + + L++ +YF Sbjct: 63 VPSYTEYSPSGNGIHIITKGKIPLRGPGTGKKVPSIGLEVYRHTRYFTFTGDSINNN--- 119 Query: 149 TWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNR 208 E+ +L ++ +E K + K S + + + R + ++ Sbjct: 120 -----HVEESTENLKVLFQKYIEK--KEVPAASKIPSVSKGSNRSNLSNSELWERMFNSK 172 Query: 209 EITAFLSCFGEEFYNGSHDE-----------WIPVVMA-VHHETRGSSKGKEIARRW-SK 255 A F NG H W A + R S+ ++ + S Sbjct: 173 NGGAIKDLFCGVLINGDHSSTDMALANHLAFWTDKDAAKMDTMFRESALMRDKWDKQHSS 232 Query: 256 QGSTYDEENFNYKWDTFDFEEIGD---------TAKKRSTFTSLFYHHGKLIPKGLLASR 306 G TY E + + + S + + K+ K Sbjct: 233 DGLTYGEMTIDRAISSTHNSISNNNASNNKENEKILLPSPYKDINGALYKVEIKVKKDEI 292 Query: 307 FSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDV 366 A Y K + +Y+ W+ + +T + ++ K ++ Sbjct: 293 EEQNIPVARHVPYLKRELCNIEKPQVYYE------LTWNNRGNNVTELVTAGSLATKREM 346 Query: 367 FDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSS 426 L+E+ N N+ + N E ++ I + D Sbjct: 347 MPLAEKSFPVNDNNVKQLIDYFDKVLASNEIETGWMVERLGHIKNDCIHPLIEKGYDILP 406 Query: 427 RFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYF 486 DL Q ++ + K + + + + Sbjct: 407 ---------ADLGDRQLLEAFQLKGTVK------------GWIDGVFNEIKSHPRALFFV 445 Query: 487 TRCVGMALLGGNKAQRFIH-IRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545 L K FI + G +GK+T M + +G +IN S Sbjct: 446 LSSFASIFLHDLKIDPFIVELAGSTSTGKTTAMKIAASVWGTNQLINEFNSTKTSVERKS 505 Query: 546 AGKANPSLI 554 + + L Sbjct: 506 SFLNSFPLY 514 >gi|269974626|gb|ACZ55147.1| bifunctional DNA primase/polymerase [Streptomyces sp. 36R-2-1B] Length = 361 Score = 67.2 bits (162), Expect = 1e-08, Method: Composition-based stats. Identities = 39/280 (13%), Positives = 63/280 (22%), Gaps = 73/280 (26%) Query: 10 AKQAIHNGFKLIPLRLGDKRPQ-----------------------RLGKWEEQLLSSEKI 46 A+ G+ + PL G K P + + + I Sbjct: 23 ARWCASQGWPVHPLAPGRKTPAANCPECRDRRHGPAGCPCPGEGRPCHGFHAATTNPQHI 82 Query: 47 DKL----PACGFGFVCGVGEQPLYAFDID-----------------SKDEKTANTFKDTF 85 D PA G G CG L DID D F Sbjct: 83 DAWWTASPAAGVGVACGPA--DLVVIDIDAHAASVPHRSRLLPGIAIPDAVNLAGLASGF 140 Query: 86 EIL-------------HGTPIVRI-GQKPKILIPFRMN--KEGIKKKKT---TESTQGHL 126 + L +R+ + + + + + + + Sbjct: 141 DTLALLAAYRDQPNPADDETTLRVRTPSGGLHVWYSNPHRETRFRCSTGSSPKVALAWQV 200 Query: 127 DILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVK 186 D+ G Y +A Y P V L E L + I P Sbjct: 201 DVRADGGYIIAPTTRTNQG-TYRAEGP-----VRRPAPLPEWLHHELVRTGHAIEPPAKP 254 Query: 187 D--KKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNG 224 + ++ Q + I+ C G Sbjct: 255 PLARSQAPGRRSRKPAAAHQILDHLISQVAQCAAAPEGTG 294 >gi|225870194|ref|YP_002746141.1| phage protein [Streptococcus equi subsp. equi 4047] gi|225699598|emb|CAW93236.1| hypothetical phage protein [Streptococcus equi subsp. equi 4047] Length = 275 Score = 67.2 bits (162), Expect = 1e-08, Method: Composition-based stats. Identities = 22/189 (11%), Positives = 47/189 (24%), Gaps = 16/189 (8%) Query: 7 KEQAKQAIHNGFKLIPLRLGDKRPQRL---GKWEEQLLSSEKIDKLPACGFGFVCGVGEQ 63 KE A GF ++P+ K+P + + P Sbjct: 4 KEYALAYQKKGFSVLPISPTGKKPMIAFADKPPMTAQEIEDFWTQYPDSNIAVRT----D 59 Query: 64 PLYAFDID-SKDEKTANTFKDT--FEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120 + DID + + +++ T + K + F+ + Sbjct: 60 KFFVIDIDLHGKANGFESLANWEHLDLITPTLQAKTASGGKHIFYFKHPDVSM---TQMI 116 Query: 121 STQGHLDILGC-GQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQE 179 +D+ Y + Y W + S + V + + + + Sbjct: 117 GFLPGVDVKAHLNNYVLVAPSKTPKG-VYAWDKDKS-KEDGTMVTASRKLVMAIKQEYNK 174 Query: 180 ITVPLVKDK 188 D Sbjct: 175 KNPGSDLDN 183 >gi|9634995|ref|NP_056711.1| gp271 [Streptococcus phage Sfi11] gi|7523555|gb|AAF63058.1|AF158600_12 gp271 [Streptococcus phage Sfi11] gi|7523585|gb|AAF63087.1|AF158601_15 gp271 [Streptococcus phage SFi18] Length = 271 Score = 67.2 bits (162), Expect = 1e-08, Method: Composition-based stats. Identities = 25/188 (13%), Positives = 48/188 (25%), Gaps = 18/188 (9%) Query: 4 MQWKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLL-SSEKIDK-L---PACGFGFVC 58 M+ + A G+ +IP+ K P + ++ + I + P Sbjct: 1 MEMVDYAINYQRMGYSVIPISKNSKTPLIS--FADKPPMTENDIRRVWRDNPDANIALRT 58 Query: 59 GVGEQPLYAFDID-SKDEKTANTFKDTFE-ILHGTPIVRIGQKPKILIPFRMNKEGIKKK 116 + D+D D ++ L + I I + + Sbjct: 59 ----DTFFVIDVDMHGDVDGLTNLRNWEHARLIPPTLQAITPSGGRHIYLKKDPNHP--I 112 Query: 117 KTTESTQGHLDILGC-GQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFK 175 +DI Y + + +K Y W T ++ L K Sbjct: 113 SQNIGMIEGVDIKAHVNNYILVPPSN-NSKGYYEWDTVHSPKD-GSITEAPLALIKVLQK 170 Query: 176 FFQEITVP 183 E Sbjct: 171 MKPEPLSY 178 >gi|220926441|ref|YP_002501743.1| bifunctional DNA primase/polymerase [Methylobacterium nodulans ORS 2060] gi|219951048|gb|ACL61440.1| Bifunctional DNA primase/polymerase [Methylobacterium nodulans ORS 2060] Length = 201 Score = 67.2 bits (162), Expect = 1e-08, Method: Composition-based stats. Identities = 25/158 (15%), Positives = 41/158 (25%), Gaps = 30/158 (18%) Query: 8 EQAKQAIHNGFKLIPLRL-----GDKRP-------------QRLGKWEEQLLSSEKIDK- 48 E A GF + P KRP + G + + E+I + Sbjct: 13 EHALAWARRGFAVFPCNPSPTGEDSKRPLVPRDKDEQGKPIPKTGGFYKATRDEEQIRRL 72 Query: 49 ---LPACGFGFVCGVGEQPLYAFDIDSK----DEKTANTFKDTFEILHGTPI--VRIGQK 99 P G G +A D D D ++ P + Sbjct: 73 WRRWPKAMIGLRMGHDA-GTFALDPDVVKKPGDADGLAAWRQLAAEHGDVPATHTHVTPS 131 Query: 100 PKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVA 137 + FR ++ +++ G G Y A Sbjct: 132 GGRHLLFRYPEDRSITNA-EGDLPKGINVRGEGGYVAA 168 >gi|317152198|ref|YP_004120246.1| hypothetical protein Daes_0479 [Desulfovibrio aespoeensis Aspo-2] gi|316942449|gb|ADU61500.1| hypothetical protein Daes_0479 [Desulfovibrio aespoeensis Aspo-2] Length = 493 Score = 67.2 bits (162), Expect = 1e-08, Method: Composition-based stats. Identities = 37/313 (11%), Positives = 77/313 (24%), Gaps = 24/313 (7%) Query: 461 VEGEPSQEFLDLVSGYF--ESEEVMDYFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTL 517 E + + + +EE Y K + ++G +GKST+ Sbjct: 138 PEKGDCSLIIAHLRDIWCNGNEEQFTYLITWFAHMFQYPWEKPNVALVVKGGKAAGKSTV 197 Query: 518 MNLIKY-AFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAA 576 + I G Y ++ L +V D+ Sbjct: 198 FDGILLPILGTLYSKMTHQEQLVGKFNRHT---------LYKLLLVAEEAFWAGDKSAEG 248 Query: 577 KIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI 636 +K M + A + + F+ + D+ RR+ I Sbjct: 249 PLKAMITDKPLQAEPKGVDAFDTYTYYRIAFVSNETRVVPATKDE---RRFFAIR-VSSD 304 Query: 637 ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAW 696 RD + L + F+ + + V P E+ + ++ W Sbjct: 305 KMRDVGYFNALWKQIENGGVAAFMDYLMTWEVDRNLVFSPPRTDVLTEDILENLSAFERW 364 Query: 697 IDDCCDIGENLW-------EESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIG 749 + E+ + + Y + ++ T + F Sbjct: 365 AFEFLHADEDDDLIEWDAPVTTFDIYDHYKRWLKEAKELGVYVSRAEIGTQTRMTQEFKR 424 Query: 750 GIKREKIEKEWKS 762 + K Sbjct: 425 LFGFTLAKAGGKR 437 >gi|258538879|ref|YP_003173378.1| phage-related DNA replication protein [Lactobacillus rhamnosus Lc 705] gi|257150555|emb|CAR89527.1| Phage-related protein, DNA replication [Lactobacillus rhamnosus Lc 705] Length = 278 Score = 66.8 bits (161), Expect = 1e-08, Method: Composition-based stats. Identities = 22/177 (12%), Positives = 45/177 (25%), Gaps = 26/177 (14%) Query: 13 AIHNGFKLIPLRLGDKRP-QRLGKWEEQLLSSEKIDKL----PACGFGFVCGVGEQPLYA 67 +GF + PL + P +++ E+ K P G + Sbjct: 14 YQQHGFAVYPLAPATRTPINGSHGYKDATKDPEQAKKWWGEHPNYNIGLGL----DGVLV 69 Query: 68 FDID---SKDEKTANTFKDTFEI----LHGTPIVRIGQKPKILIPFRMNKEGI----KKK 116 FDID + + + + + I F KE Sbjct: 70 FDIDMGHKSEANGNESLAKLCADGRAGQIPSSYIETTPNGGLHIFFTYPKELKLTSRSDL 129 Query: 117 KTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYL 173 + + LD + G + + P K+ + ++ + Sbjct: 130 FSKNGEKTGLDYVATG--VPVFPSIRENGMY----QPLKGHKITKLAPAPQWLLDEI 180 >gi|254384015|ref|ZP_04999361.1| bifunctional DNA primase/polymerase [Streptomyces sp. Mg1] gi|194342906|gb|EDX23872.1| bifunctional DNA primase/polymerase [Streptomyces sp. Mg1] Length = 361 Score = 66.8 bits (161), Expect = 1e-08, Method: Composition-based stats. Identities = 34/252 (13%), Positives = 57/252 (22%), Gaps = 73/252 (28%) Query: 8 EQAKQAIHNGFKLIPLRLGDKRPQRL-----------------------GKWEEQLLSSE 44 + A G+ + PL G K P + Sbjct: 19 DVASWLAGRGYPVHPLAPGTKTPAPNCPDCRGGGHPAQDCPCHALGRWCHGFHAATTDLR 78 Query: 45 KIDKL----PACGFGFVCGVGEQPLYAFDID-----------------SKDEKTANTFKD 83 + P G G CG L D+D D + Sbjct: 79 TLRAWWETEPGFGIGVACGPA--GLVVIDVDAHAEQLPDRQRLLPGIPIDDRVDLTGLQS 136 Query: 84 TFEILHGTPIVRI--------------GQKPKILIPFRMNKEGIKKKKTTES-----TQG 124 F+ L R + I +R + G + + ++ S Sbjct: 137 GFDTLALLAAYRSRPNPCEDTSTLRVRTPSGGMHIWYRAPRGGPRLRCSSGSSPKVALAW 196 Query: 125 HLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTP-LLSEEDVEYLFKFFQEITVP 183 +D+ G Y VA P L + L + + P Sbjct: 197 QVDVRAVGGYIVAPTTRTAAGVY-------EPLPGARVPAALPLWLIAELARTGHTVEAP 249 Query: 184 LVKDKKSIIPSK 195 + + PS+ Sbjct: 250 VAPSDAPVTPSR 261 >gi|239905583|ref|YP_002952322.1| hypothetical protein DMR_09450 [Desulfovibrio magneticus RS-1] gi|239795447|dbj|BAH74436.1| hypothetical protein [Desulfovibrio magneticus RS-1] Length = 665 Score = 66.8 bits (161), Expect = 1e-08, Method: Composition-based stats. Identities = 26/200 (13%), Positives = 56/200 (28%), Gaps = 28/200 (14%) Query: 14 IHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSK 73 + NG++ +KRP + G CG + D+D+ Sbjct: 65 VENGWQR---WCREKRPFDQANFSTDRA-------------GIACGPAS-GVLVLDVDNH 107 Query: 74 DEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQ 133 A + + + + ++ + S +G +I G G Sbjct: 108 HLFEAWIQEKHPDEPLPVTLKVKTGGHGERFHYYFQYPSGDEQYSCRSVKGIFEIRGIGG 167 Query: 134 YFVAYNI-HPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSII 192 + HP+T+K Y + VE P++ +L + ++ + Sbjct: 168 QILCPGSLHPETRKPYIF--------VEIAPIMPAPL--WLLEMSKKSYGRKKDHDEQSP 217 Query: 193 PSKTWTNNNNRQYTNREITA 212 P + + Sbjct: 218 PEGIRKKHILEIDLVDTFLS 237 >gi|255320906|ref|ZP_05362080.1| bifunctional DNA primase/polymerase [Acinetobacter radioresistens SK82] gi|255302075|gb|EET81318.1| bifunctional DNA primase/polymerase [Acinetobacter radioresistens SK82] Length = 587 Score = 66.8 bits (161), Expect = 1e-08, Method: Composition-based stats. Identities = 70/526 (13%), Positives = 162/526 (30%), Gaps = 51/526 (9%) Query: 272 FDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRF--SDAYNKAMFSIYKKGHFLYTAD 329 F E A + ++ KG +D + + + + L + Sbjct: 34 FSPEPPEKPANNFQGQDLAESENLVVVEKGDAGISTENTDLSEEELLAKWLARFCLIEGE 93 Query: 330 TKAWYKKDKNNVYI---------------WSLTLDKITASIMNFLVSMKEDVFDLSEEPE 374 T W + K W+ L + T + + +++ ++E Sbjct: 94 TNIWDEYGKKIWKKSAFTTMLGGKKVFDQWNGHLHRKTITRDDVDGRLEDGGHKKAKEMI 153 Query: 375 DNNKNSKSPRFWFNTDYRR---QNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGE 431 D + + ++T R +V +++ A + +++ I + L + Sbjct: 154 DRFIMLEGKKACWDTFRRELVGTDVMKDNWAGAYDLWVKSKEKRMIWHENLVFDPT-MKT 212 Query: 432 QDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEV-MDYFTRCV 490 ++G ++ G + L E ++L+ +E ++ + + Sbjct: 213 KEGQINTYDGMII--LPLLDTNNQMLGAGEAFESCIPIINLLKFLCGNENNAYEWILKWL 270 Query: 491 GMALL--GGNKAQRFIHIRGVGGSGKSTLMNL-IKYAFGNQYVINAEASDIMQNRPPEAG 547 L G + V GSGKS + +G +Y + + + A Sbjct: 271 AYPLQHPGAKMNTSILMCSAVQGSGKSLFFEKVMTRIYGEKYSVTLGQNGLESIYTDWAE 330 Query: 548 KANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPF 607 + L L N++ IK M G+ + + + YS++ F Sbjct: 331 R---KLYCLFEEIFN-----NKSKFGMMGLIKHMITGEKIRIEKKFMSGYSQNNHINCVF 382 Query: 608 IVPNKHL-FVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + + D RR++V+ ++ + + D +L + +A F + Sbjct: 383 LSNEVQPLAIEERD----RRFLVLEPNQKLND-DLKKHIELCLEPDSQAISAFYTYLLNL 437 Query: 667 ISKGLD-VDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEE-----SHSLAKSYSE 720 + P + ++ + G ++ ++DD G L S L +Y E Sbjct: 438 DLTDFNEYTEPPMTKAKQKIIQFGLPGWKLFLDDW--RGGYLKYPFVCCLSDDLYTAYRE 495 Query: 721 YREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRII 766 + + + S + + L ++ G R Sbjct: 496 WCHKNGE--KIIASNKFLNLVASERVVAKGHGRIYESVLNGPGTGY 539 >gi|312873799|ref|ZP_07733843.1| bifunctional DNA primase/polymerase, N-terminal domain protein [Lactobacillus iners LEAF 2052A-d] gi|311090680|gb|EFQ49080.1| bifunctional DNA primase/polymerase, N-terminal domain protein [Lactobacillus iners LEAF 2052A-d] Length = 264 Score = 66.8 bits (161), Expect = 2e-08, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 45/175 (25%), Gaps = 22/175 (12%) Query: 9 QAKQAIHNGFKLIPLRLGDKRPQRLGKWEE-QLLSSEKID----KLPACGFGFVCGVGEQ 63 A GF +IP+ KRP K+ L+ E+I K P Sbjct: 8 FAIAYAKKGFSVIPISPESKRPLI--KFANLPPLTVEEITALWCKYPTANIALKT----D 61 Query: 64 PLYAFDIDSKDEKTANTFKDT-FEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTEST 122 DID + + K + + +R K K Sbjct: 62 KFIVLDIDRHEIDGFESIKALHRPDWFLNTLSEKTAHNGLHFFYRKPKNM--KMTQVIGI 119 Query: 123 QGHLDILGCG-QYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKF 176 +D+ Y V Y W V ++ +E++ Sbjct: 120 LPGVDLKANKNNYVVVAPSVFGYG-YYKWLNHLPMKDV------PKDMLEWIKSK 167 >gi|190151436|ref|YP_001974347.1| putative replication protein [Streptococcus phage PH15] gi|190014430|emb|CAQ57816.1| hypothetical protein [Streptococcus phage PH15] Length = 273 Score = 66.4 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 41/283 (14%), Positives = 78/283 (27%), Gaps = 27/283 (9%) Query: 1 MPVMQWKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEK-----IDKLPACGFG 55 MP M KE A Q GF +IP+ +K P + ++ S D P Sbjct: 1 MPSM--KEYALQYQKLGFSVIPINPKNKMPLI--DFADKPPMSASEIENFWDGFPNANIA 56 Query: 56 FVCGVGEQPLYAFDID-SKDEKTANTFKDT--FEILHGTPIVRIGQKPKILIPFRMNKEG 112 + DID + K+ +++ T + K L F+ + E Sbjct: 57 LRT----TNFFVIDIDKHGKSNGFESLKNWEHLDLIEPTLQAKTASGGKHLFYFKRDDEP 112 Query: 113 IKKKKTTESTQGHLDILGC-GQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVE 171 +DI Y + + Y W + K T + D+ Sbjct: 113 ---ITQMIGFLAGVDIKAHENNYVLVAPSATDKGQ-YEW--DLEKSKEGGTIVTPSRDLI 166 Query: 172 YLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIP 231 K T D + S + + ++ + G ++ + Sbjct: 167 RAIKRQYGETHGYKYDGTDGLRSLARRSYQRDRTQTTDLFETI--ALGFGDEGGRNDKLA 224 Query: 232 --VVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTF 272 V ++ K + + E+ ++ Sbjct: 225 SFVGGLLYRAVDDEVVVKLAQLANANSQNPLPEKELMRTVESM 267 >gi|149022008|ref|ZP_01835970.1| phage protein [Streptococcus pneumoniae SP23-BS72] gi|147929852|gb|EDK80841.1| phage protein [Streptococcus pneumoniae SP23-BS72] Length = 273 Score = 66.4 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 37/281 (13%), Positives = 72/281 (25%), Gaps = 23/281 (8%) Query: 1 MPVMQWKEQAKQAIHNGFKLIPLRLGDKRPQR--LGKWEEQLLSSEK-IDKLPACGFGFV 57 MP M KE A Q GF +IP+ +K P K E D P Sbjct: 1 MPSM--KEYALQYQKLGFSVIPINPKNKMPLIEFADKPAMTPSEIENFWDGYPNANIALK 58 Query: 58 CGVGEQPLYAFDID-SKDEKTANTFKDT--FEILHGTPIVRIGQKPKILIPFRMNKEGIK 114 + DID + K ++ T + K L F+ E Sbjct: 59 T----TNFFVIDIDKHGKSNGFESLKKWKHLNLIEPTLQAKTASGGKHLFYFKREDEP-- 112 Query: 115 KKKTTESTQGHLDILGC-GQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYL 173 +DI Y + + Y W + S+ ++ + Sbjct: 113 -ITQMIGFLPGVDIKAHENNYVLVAPSATDKGQ-YEW-DLEKSKEGGTMVTPSKYLIQSI 169 Query: 174 FKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIP-- 231 K + + ++ + + F + G ++ + Sbjct: 170 KKQY---GETHGYKYDGKDGLRDLVRRSHTRDRTQTTDLFETIALGFGDEGGRNDKLAKF 226 Query: 232 VVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTF 272 V ++ + + + E+ ++ Sbjct: 227 VGGLLYRAVDDGVVVQLARLANANSPTPLPEKEMMRTIESM 267 >gi|220921973|ref|YP_002497274.1| bifunctional DNA primase/polymerase [Methylobacterium nodulans ORS 2060] gi|219946579|gb|ACL56971.1| Bifunctional DNA primase/polymerase [Methylobacterium nodulans ORS 2060] Length = 201 Score = 66.4 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 25/158 (15%), Positives = 41/158 (25%), Gaps = 30/158 (18%) Query: 8 EQAKQAIHNGFKLIPLRL-----GDKRP-------------QRLGKWEEQLLSSEKIDK- 48 E A GF + P KRP + G + + E+I + Sbjct: 13 EHALAWARRGFAVFPCNPSPTGEDSKRPLVPRDKDEQGKPIPKTGGFYKATRDEEQIRRL 72 Query: 49 ---LPACGFGFVCGVGEQPLYAFDIDSK----DEKTANTFKDTFEILHGTPI--VRIGQK 99 P G G +A D D D ++ P + Sbjct: 73 WRRWPKAMIGLRMGHDA-GTFALDPDVVKKPGDADGLAVWRRLAAEHGDVPATHTHVTPS 131 Query: 100 PKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVA 137 + FR ++ +++ G G Y A Sbjct: 132 GGRHLLFRYPEDRSITNA-EGDLPKGINVRGEGGYVAA 168 >gi|123231941|ref|XP_001286346.1| hypothetical protein [Trichomonas vaginalis G3] gi|121851703|gb|EAX73416.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 263 Score = 66.4 bits (160), Expect = 2e-08, Method: Composition-based stats. Identities = 42/272 (15%), Positives = 79/272 (29%), Gaps = 35/272 (12%) Query: 483 MDYFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLM-NLIKYAF-GNQYVINAEASDIM 539 + Y L K + + I G G+GK+T +++ G +I Sbjct: 3 ISYVW--FANILQHPSAKNETALIIIGKQGTGKNTFFTDILCKLLEGYSNPNMTNLENIC 60 Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599 N S+ + + + +N+ +K + Y + Sbjct: 61 GKF-------NSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVC 113 Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWF 659 + + N D RRY+V+ +D + L T + Sbjct: 114 ENVANFIMVSNNSVPMKLESSD---RRYVVVR-TSEAHMQDTEYFDDLAETLTSDFYNHL 169 Query: 660 LKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHS 713 + IP + ++ + + +ID +C D S Sbjct: 170 FSYFMTLDISKFNPRQIPHT--EERQTLLEANKSVYELFIDETNFECLDE--------RS 219 Query: 714 LAKSYSEYREQELNYDRKRISTRTVTLNLKQK 745 L SY +Y ++ Y S RT N+K Sbjct: 220 LYDSYKQYCQE---YGYMAASKRTFLANVKNL 248 >gi|11467844|ref|NP_050895.1| hypothetical protein NeolCp090 [Nephroselmis olivacea] gi|11467901|ref|NP_050952.1| hypothetical protein NeolCp147 [Nephroselmis olivacea] gi|5880773|gb|AAD54866.1|AF137379_89 unknown [Nephroselmis olivacea] gi|5880830|gb|AAD54923.1|AF137379_146 unknown [Nephroselmis olivacea] Length = 389 Score = 66.1 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 28/198 (14%), Positives = 54/198 (27%), Gaps = 16/198 (8%) Query: 442 QKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-----ESEEVMDYFTRCVGMALLG 496 Q + P+ + D ++ L Sbjct: 180 QTIDPSSDHNFMYQVPLRLGPLNQLPPLTDRFKEALIRLVGPDPADLNRLRLFFHHCLTY 239 Query: 497 GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRL 556 + + G G+GKSTL ++ G +++ A +L Sbjct: 240 QPGSNIAFLLSGDQGTGKSTLEKIVTKLLGEDRCHAMRLAEL------HNESARTALRNA 293 Query: 557 MGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV 616 + + E +K +TG D ++ ++ Y + + ++ NK Sbjct: 294 RVLFVNEVYELETGTPAFE-ILKTLTGRDLVSNKVLYV-GFFKFTFRGVVVLLSNKPEKD 351 Query: 617 RNP---DDAWWRRYIVIP 631 D A R I IP Sbjct: 352 LGSGFADFAMRDRVIEIP 369 >gi|148990199|ref|ZP_01821430.1| phage protein [Streptococcus pneumoniae SP6-BS73] gi|147924466|gb|EDK75555.1| phage protein [Streptococcus pneumoniae SP6-BS73] Length = 270 Score = 66.1 bits (159), Expect = 2e-08, Method: Composition-based stats. Identities = 34/275 (12%), Positives = 70/275 (25%), Gaps = 21/275 (7%) Query: 7 KEQAKQAIHNGFKLIPLRLGDKRPQR--LGKWEEQLLSSEK-IDKLPACGFGFVCGVGEQ 63 KE A Q GF +IP+ +K P K E D P Sbjct: 2 KEYALQYQKLGFSVIPINPKNKMPLIDFADKPAMTPSEIENFWDGYPNANIALKT----T 57 Query: 64 PLYAFDID-SKDEKTANTFKDT--FEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120 + DID + K ++ T + K L F+ E Sbjct: 58 NFFVIDIDKHGKSNGFESLKKWKHLNLIEPTLQAKTASGGKHLFYFKREDEP---ITQMI 114 Query: 121 STQGHLDILGC-GQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQE 179 +DI Y + + Y W + S++ ++ + K + Sbjct: 115 GFLPGVDIKAHENNYVLVAPSATDKGQ-YEW-DLEKSKEGGTMVTPSKDLIQSIKKQY-- 170 Query: 180 ITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIP--VVMAVH 237 + ++ + + F + G ++ + V ++ Sbjct: 171 -GETHGYKYDGKDGLRDLVRRSHTRDRTQTTDLFETIALGFGDEGGRNDKLAKFVGGLLY 229 Query: 238 HETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTF 272 + + + E+ ++ Sbjct: 230 RAVDDGVVVQLARLANANSPNPLPEKEMMRTIESM 264 >gi|9632973|ref|NP_050001.1| putative replication protein [Streptococcus phage Sfi21] gi|5524054|gb|AAD44106.1|AF115103_36 orf271 gp [Streptococcus phage Sfi21] gi|2352439|gb|AAC72437.1| orf271 [Streptococcus phage Sfi21] Length = 271 Score = 66.1 bits (159), Expect = 3e-08, Method: Composition-based stats. Identities = 25/188 (13%), Positives = 48/188 (25%), Gaps = 18/188 (9%) Query: 4 MQWKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLL-SSEKIDK-L---PACGFGFVC 58 M+ + A G+ +IP+ K P + ++ + I + P Sbjct: 1 MEMVDYAINYQRMGYSVIPISKNGKTPLIS--FADKPPMTENDIRRVWRDNPDANIALKT 58 Query: 59 GVGEQPLYAFDID-SKDEKTANTFKDTFE-ILHGTPIVRIGQKPKILIPFRMNKEGIKKK 116 + D+D D ++ L + I I + + Sbjct: 59 ----DTFFVIDVDMHGDVDGLTNLRNWEHARLIPPTLQAITPSGGRHIYLKKDPNHP--I 112 Query: 117 KTTESTQGHLDILGC-GQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFK 175 +DI Y + + +K Y W T ++ L K Sbjct: 113 SQNIGMIEGVDIKAHVNNYILVPPSN-NSKGYYEWDTVHSPKD-GSITEAPLALIKVLQK 170 Query: 176 FFQEITVP 183 E Sbjct: 171 MKPEPLSY 178 >gi|23455860|ref|NP_695090.1| hypothetical protein O1205p12 [Streptococcus phage O1205] gi|2444092|gb|AAC79528.1| ORF12 [Streptococcus phage O1205] Length = 269 Score = 65.7 bits (158), Expect = 3e-08, Method: Composition-based stats. Identities = 24/184 (13%), Positives = 46/184 (25%), Gaps = 18/184 (9%) Query: 8 EQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLL-SSEKIDK-L---PACGFGFVCGVGE 62 + A G+ +IP+ K P + ++ + I + P Sbjct: 3 DYAINYQRMGYSVIPISKNGKTPLIS--FADKPPMTENDIRRVWRDNPDANIALKT---- 56 Query: 63 QPLYAFDID-SKDEKTANTFKDTFE-ILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120 + D+D D ++ L + I I + + Sbjct: 57 DTFFVIDVDMHGDVDGLTNLRNWEHARLIPPTLQAITPSGGRHIYLKKDPNHP--ISQNI 114 Query: 121 STQGHLDILGC-GQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQE 179 +DI Y + + +K Y W T ++ L K E Sbjct: 115 GMIEGVDIKAHVNNYILVPPSN-NSKGYYEWDTVHSPKD-GSITEAPLALIKVLQKMKPE 172 Query: 180 ITVP 183 Sbjct: 173 PLSY 176 >gi|260654750|ref|ZP_05860238.1| ATPase, RecA family [Jonquetella anthropi E3_33 E1] gi|260630465|gb|EEX48659.1| ATPase, RecA family [Jonquetella anthropi E3_33 E1] Length = 691 Score = 65.7 bits (158), Expect = 3e-08, Method: Composition-based stats. Identities = 23/117 (19%), Positives = 38/117 (32%), Gaps = 8/117 (6%) Query: 216 CFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFE 275 + S+++WI V MA+ HE G ++ WS+ S Y E KW F+ Sbjct: 6 DALKFISPDSYEDWIAVGMALKHE----GLGLDVWDAWSRDSSKYREGECAGKWAGFNET 61 Query: 276 EIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKA 332 G T +L + + D + Y Y + + Sbjct: 62 HGGA----PVTGGTLIAMAKRNGYAPSSQAFGWDDEVAEVGRDYHIVDAAYVGEERV 114 >gi|325002049|ref|ZP_08123161.1| hypothetical protein PseP1_24956 [Pseudonocardia sp. P1] Length = 739 Score = 65.7 bits (158), Expect = 3e-08, Method: Composition-based stats. Identities = 34/259 (13%), Positives = 69/259 (26%), Gaps = 19/259 (7%) Query: 7 KEQAKQAIHNGFKLIPLRLGDKR--PQRLGKWEEQLLSSEKIDKLPACG-FGFVCGVGEQ 63 ++ Q G+ PL K+ P+ + + ++ +++ + G +G + Sbjct: 10 RKVIDQYFARGWNPFPLPDRKKKTPPEGVTGRGAKPVTRDQVSRWYNDGAYGNLGVAIPS 69 Query: 64 PLYAFDIDSKDE---------KTANTFKDTFEILHGTPIVRIGQKP--KILIPFRMNKEG 112 + D+D + + + L T V + F + Sbjct: 70 NVIGIDVDDYTKPNGTVYEGAALLAELEAEYGKLPVTYTVSRIRDHQRSGTRFFVVPGAY 129 Query: 113 IKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRF-----KVEDTPLLSE 167 I +Y V EY +P + D P L E Sbjct: 130 DPSDFVPNIQDSIQLIRPNYRYSVMAPSVHPEGDEYVLYSPDGNTAEYLPRPADLPELPE 189 Query: 168 EDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHD 227 +L + V + + + +L + G HD Sbjct: 190 SWCVFLDSPQERRGRVEVTSAELTEFLASLREGIPDETVQDWTITYLQQLQDTKPGGRHD 249 Query: 228 EWIPVVMAVHHETRGSSKG 246 + V A+ + R G Sbjct: 250 AAMRQVTALLYLAREGHPG 268 >gi|258646909|ref|ZP_05734378.1| virulence-associated protein E [Dialister invisus DSM 15470] gi|260404351|gb|EEW97898.1| virulence-associated protein E [Dialister invisus DSM 15470] Length = 715 Score = 65.7 bits (158), Expect = 3e-08, Method: Composition-based stats. Identities = 34/308 (11%), Positives = 72/308 (23%), Gaps = 32/308 (10%) Query: 6 WKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPL 65 WK Q + + P G + W + G GF G P Sbjct: 21 WKFQKRGGKNTKIPYNPKTGGMAKSNSPETWASFDTAVNAFSGGTYDGIGFELG--SSPF 78 Query: 66 YAFDID--SKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQ 123 DID + + + + K +I + Sbjct: 79 VGIDIDYCIEGGVVNKEAQKIIDDFASYTELSPSCKGIHIIV------KADIADGRGRRK 132 Query: 124 GHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVP 183 G+++I G++F K+ + + L++ D + + + P Sbjct: 133 GNIEIYPAGRFFTVTGNVIPGYKKISTEGKALQ------ALIAIVDAKTPLQELPQN--P 184 Query: 184 LVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDE--------WIPVVMA 235 L+ + + + Q E + S + W Sbjct: 185 LIDPPEMLDSELINKIRQSGQGAKFEALYDRGDLSAYGGDDSAADQALMNILAWWTNGDM 244 Query: 236 VHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHG 295 + E +S +W+ + Y + + + + Sbjct: 245 LAMERMFTSSALGKREKWANR-QDYRDRTIQEAIRGMNGNGY-----DPVKYKEQKQLNK 298 Query: 296 KLIPKGLL 303 I Sbjct: 299 MKIDAENP 306 >gi|321157016|emb|CBW39004.1| Putative phage bifunctional primase/polymerase protein [Streptococcus phage 040922] Length = 270 Score = 65.7 bits (158), Expect = 3e-08, Method: Composition-based stats. Identities = 34/275 (12%), Positives = 70/275 (25%), Gaps = 21/275 (7%) Query: 7 KEQAKQAIHNGFKLIPLRLGDKRPQR--LGKWEEQLLSSEK-IDKLPACGFGFVCGVGEQ 63 KE A Q GF +IP+ +K P K E D P Sbjct: 2 KEYALQYQKLGFSVIPINPKNKMPLIDFADKLAMTPSEIENFWDGYPNANIALKT----T 57 Query: 64 PLYAFDID-SKDEKTANTFKDT--FEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120 + DID + K ++ T + K L F+ E Sbjct: 58 NFFVIDIDKHGKSNGFESLKKWKHLNLIEPTLQAKTASGGKHLFYFKREDEP---ITQMI 114 Query: 121 STQGHLDILGC-GQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQE 179 +DI Y + + Y W + S++ ++ + K + Sbjct: 115 GFLPGVDIKAHENNYVLVAPSATDKGQ-YEW-DLEKSKEGGTMVTPSKDLIQSIKKQY-- 170 Query: 180 ITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIP--VVMAVH 237 + ++ + + F + G ++ + V ++ Sbjct: 171 -GETHGYKYDGKDGLRDLVRRSHTRDRTQTTDLFETIALGFGDEGGRNDKLAKFVGGLLY 229 Query: 238 HETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTF 272 + + + E+ ++ Sbjct: 230 RAVDDGVVVQLARLANANSPNPLPEKEMMRTIESM 264 >gi|239905623|ref|YP_002952362.1| hypothetical protein DMR_09850 [Desulfovibrio magneticus RS-1] gi|239795487|dbj|BAH74476.1| hypothetical protein [Desulfovibrio magneticus RS-1] Length = 680 Score = 65.7 bits (158), Expect = 3e-08, Method: Composition-based stats. Identities = 40/272 (14%), Positives = 83/272 (30%), Gaps = 27/272 (9%) Query: 14 IHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSK 73 + NG++ +KRP + G CG + D+D+ Sbjct: 65 VENGWQR---WCREKRPFDQANFSTDRA-------------GIACGPAS-GVLVLDVDNH 107 Query: 74 DEKTANTFKDT-FEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCG 132 A ++ E L T V+ G + + G ++ S +G DI G G Sbjct: 108 HLFEAWIQENHPDEPLPVTLKVKTGGHGERFHLYFQYPLGDEQYFCR-SVKGTFDIRGIG 166 Query: 133 QYFVAYNI-HPKTKKEYTWTTPPHRFKVE-DTPLLSEEDVEYLFKFFQEITVPLVKDKKS 190 + HP+T+K Y +S++ +++ K Sbjct: 167 GQVLCPGSLHPETRKPYVVVENVSIAPAPMWLLEMSKKSHGGKKNHYEQNPPESTSKKHI 226 Query: 191 IIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEW-IPVVMAVHHETRGSSKGKEI 249 + + T +N ++ L+ F + + W + + + + + + Sbjct: 227 LEIAPVDTFLSNLNLSDDTKQKILTRFPQGQRSEP--SWSVLLGLLNTNVDEKTIRLIYQ 284 Query: 250 AR---RWSKQGSTYDEENFNYKWDTFDFEEIG 278 + S++ + E T IG Sbjct: 285 SYPIGEKSREKPDWFEREIEAAKKTIAQNPIG 316 >gi|123189481|ref|XP_001282070.1| hypothetical protein [Trichomonas vaginalis G3] gi|121838350|gb|EAX69140.1| hypothetical protein TVAG_551650 [Trichomonas vaginalis G3] Length = 258 Score = 65.3 bits (157), Expect = 4e-08, Method: Composition-based stats. Identities = 38/254 (14%), Positives = 76/254 (29%), Gaps = 24/254 (9%) Query: 496 GGNKAQRFIHIRGVGGSGKSTLM-NLIKYAF-GNQYVINAEASDIMQNRPPEAGKANPSL 553 K + + I G G+GK+T +++ G +I N S+ Sbjct: 10 PSAKNETALIIIGKQGTGKNTFFTDILCKLLEGYSNPNMTNLENICGKF-------NSSI 62 Query: 554 IRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKH 613 + + + +N+ +K + Y + + + N Sbjct: 63 ENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAV 122 Query: 614 LFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDV 673 D RRY+V+ +D + L T + + Sbjct: 123 PMKLESSD---RRYVVVR-TSEAHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNP 178 Query: 674 D-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRK 731 IP + ++ + + +ID+ + + SL SY +Y ++ Y Sbjct: 179 RQIPHT--EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE---YGYM 229 Query: 732 RISTRTVTLNLKQK 745 S RT N+K Sbjct: 230 TASKRTFLANVKSL 243 >gi|9632451|ref|NP_049423.1| hypothetical protein DT1p34 [Streptococcus phage DT1] gi|4530171|gb|AAD21911.1| unknown [Streptococcus phage DT1] Length = 271 Score = 65.3 bits (157), Expect = 4e-08, Method: Composition-based stats. Identities = 28/207 (13%), Positives = 50/207 (24%), Gaps = 18/207 (8%) Query: 8 EQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLL-SSEKIDK-L---PACGFGFVCGVGE 62 + A G+ +IP+ K P + ++ + I + P Sbjct: 5 DYAINYQRMGYSVIPISKNGKTPLIS--FADKPPMTENDIRRVWRDNPDANIALKT---- 58 Query: 63 QPLYAFDID-SKDEKTANTFKDTFE-ILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120 + D+D D ++ L + I I + + Sbjct: 59 DTFFVIDVDMHGDVDGLTNLRNWEHARLIPKTLQAITPSGGRHIYLKKDPNHP--ISQNI 116 Query: 121 STQGHLDILGC-GQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQE 179 +DI Y + + +K Y W T ++ L K E Sbjct: 117 GMIEGVDIKAHVNNYILVPPSN-NSKGYYEWDTVHSPKD-GSITEAPLALIKVLQKMKPE 174 Query: 180 ITVPLVKDKKSIIPSKTWTNNNNRQYT 206 V S T T Sbjct: 175 PLNYEVSSFASDSVRSTKTTKLFESIL 201 >gi|307293588|ref|ZP_07573432.1| Bifunctional DNA primase/polymerase [Sphingobium chlorophenolicum L-1] gi|306879739|gb|EFN10956.1| Bifunctional DNA primase/polymerase [Sphingobium chlorophenolicum L-1] Length = 574 Score = 65.3 bits (157), Expect = 4e-08, Method: Composition-based stats. Identities = 36/331 (10%), Positives = 80/331 (24%), Gaps = 37/331 (11%) Query: 10 AKQAIHNGFKLIPLRLGDKRP---QRLGKWEEQLLSSEKIDKLPACG--FGFVCGVGEQP 64 A+ AI G K++ K P S +++ + + + Sbjct: 16 AEHAIAAGMKVLAAEPRAKNPDVRFSPNGLNSATASLKEVKRWLKTDDQINLAGALKDTG 75 Query: 65 LYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQK-PKILIPFRMNKEGIKKKKTTESTQ 123 + A D+D + + + R + +R + S Sbjct: 76 ICAVDVDGPEGE------KALRRITKVSKTRKTKTRNGSHRFYRYDGNLGGSVIKLASDL 129 Query: 124 GHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVP 183 + Y + Y +S E V+ + + Sbjct: 130 DFI----MSGYVMLPGSRHPDGGLYKSDDFSLP-----IADMSPELVKAIRNHRRPRKKS 180 Query: 184 LVKDKKSIIPSKTWTNNN---------NRQYTNREITAFLSCFGEEFYNGSHDEWIPVVM 234 K K N++ + Y I L F + + V Sbjct: 181 PEPSKTEARIVKGKRNDSLASIAGSLRRQGYEEEVILTMLDAFNQHYCRPPLRSQ-EVER 239 Query: 235 AVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHH 294 H +R + + +E+ S + + W + + + F Sbjct: 240 IAHSISRYAPEHEELFGLMS----NVTPRDVAFLWKPYFVRGATNLLEGDPNVGKTFLLC 295 Query: 295 G--KLIPKGLLASRFSDAYNKAMFSIYKKGH 323 I G ++A + + + + Sbjct: 296 KLAAAISSGTPLPGQTEATAQNVLFMSAEDD 326 >gi|9632925|ref|NP_049954.1| putative replication protein [Streptococcus phage Sfi19] gi|5524020|gb|AAD44073.1|AF115102_32 orf271 gp [Streptococcus phage Sfi19] gi|455527|emb|CAA54617.1| unnamed protein product [Streptococcus phage SFi18] gi|4049996|gb|AAC97923.1| gp271 [Streptococcus phage Sfi19] Length = 271 Score = 65.3 bits (157), Expect = 4e-08, Method: Composition-based stats. Identities = 25/188 (13%), Positives = 48/188 (25%), Gaps = 18/188 (9%) Query: 4 MQWKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLL-SSEKIDK-L---PACGFGFVC 58 M+ + A G+ +IP+ K P + ++ + I + P Sbjct: 1 MEMVDYAINYQRMGYSVIPISNNSKTPLIS--FADKPPMTENDIRRVWRDNPDANIALRT 58 Query: 59 GVGEQPLYAFDID-SKDEKTANTFKDTFE-ILHGTPIVRIGQKPKILIPFRMNKEGIKKK 116 + D+D D ++ L + I I + + Sbjct: 59 ----DTFFVIDVDMHGDVDGLTNLRNWEHARLIPQTLQAITPSGGRHIYLKKDPNHP--I 112 Query: 117 KTTESTQGHLDILGC-GQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFK 175 +DI Y + + +K Y W T ++ L K Sbjct: 113 SQNIGMIEGVDIKAHVNNYILVPPSN-NSKGYYEWDTVHSPKD-GSITEAPLALIKVLQK 170 Query: 176 FFQEITVP 183 E Sbjct: 171 MKPEPLSY 178 >gi|123134482|ref|XP_001277107.1| hypothetical protein [Trichomonas vaginalis G3] gi|121820031|gb|EAX64177.1| hypothetical protein TVAG_571570 [Trichomonas vaginalis G3] Length = 260 Score = 65.3 bits (157), Expect = 4e-08, Method: Composition-based stats. Identities = 40/266 (15%), Positives = 79/266 (29%), Gaps = 26/266 (9%) Query: 485 YFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLM-NLIKYAF-GNQYVINAEASDIMQN 541 Y V L K + + I G G+GK+T +++ G +I Sbjct: 1 YLM-WVANILQHPSAKIETALIIIGNQGTGKNTFFTDILCKLLEGYSNPNMTNLENICGK 59 Query: 542 RPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESP 601 N S+ + + + +N+ +K + Y + Sbjct: 60 F-------NSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCEN 112 Query: 602 ASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLK 661 + + N D RRY+V+ +D + L T + Sbjct: 113 VANFIMVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFS 168 Query: 662 GVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYS 719 + IP + ++ + + +ID+ + + + SL Y Sbjct: 169 YFMTLDISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFVSLDERSLYDEYK 222 Query: 720 EYREQELNYDRKRISTRTVTLNLKQK 745 +Y ++ Y S RT N+K Sbjct: 223 QYCQE---YGYMAASKRTFLANVKSL 245 >gi|300772203|ref|ZP_07082073.1| N- superfamily bifunctional DNA primase/polymerase [Sphingobacterium spiritivorum ATCC 33861] gi|300760506|gb|EFK57332.1| N- superfamily bifunctional DNA primase/polymerase [Sphingobacterium spiritivorum ATCC 33861] Length = 859 Score = 65.3 bits (157), Expect = 4e-08, Method: Composition-based stats. Identities = 87/709 (12%), Positives = 192/709 (27%), Gaps = 116/709 (16%) Query: 9 QAKQAIHNGFKLIPLRLGDK--RPQR------LGKWEEQLLSS----EKIDKLPACGFGF 56 Q KQ I +G LIP+R D+ RP + +++ + + + + Sbjct: 13 QIKQLIDDGCSLIPVRDKDEGERPAKTPCISAWKQYQTERMDEGALWQAMQTYGTSAVAV 72 Query: 57 VCGVGEQPLYAFDIDSK-DEKTANTFKDTFEILHG--TPIVRI--GQKPKILIPFRMNKE 111 V G L DIDSK + E L+ PI+RI I +R+ Sbjct: 73 VTGEVSGRLELIDIDSKYEPGIEALVLKDIEKLYPDLYPILRIHATPSGGRHIIYRIEDG 132 Query: 112 GIK------------------KKKTTESTQGHL---DILGCGQYFVAYNIHPKTKKEYTW 150 ++ +KK + + + G G YF+ Sbjct: 133 DVEGNQKLAGREATEAELQDQRKKGRKRLSTQVNFLETRGEGGYFLYPPS---------- 182 Query: 151 TTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREI 210 + P L+ E+ + + + + K + + Sbjct: 183 -MGYSVIQDVPIPQLTWEERCGIINLCRSYNRLVKIEPTPKPTKKEDDWYTTNPFEDFNE 241 Query: 211 TAFLSCFGEEFYN------GSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGS-----T 259 EEF W + ++ K + ++ Sbjct: 242 NCDPVQLIEEFGWKRTKHFSDRFFWFTRPGKDKGVSASFNRSKRVFYIFTSSTELEPTRG 301 Query: 260 YDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKG------LLASRFSDAYNK 313 Y+ + + ++ +S + + + + K + S FSD Sbjct: 302 YNPASILAELRHGGNKKEAYHDLVKSGYGKVKRQIEQAVIKKAAIKGTGIPSNFSDEAKA 361 Query: 314 AMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLV------------- 360 + +K + +++ +K ++ +L A + F Sbjct: 362 DHIQLAEKYNE--DHPHGTFWEYNKQGDFVINLENLLTVAVELGFRSFNGTVVQVNGKFV 419 Query: 361 SMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSD 420 + +D++ + ++++ Y R S S + S Sbjct: 420 TTVDDIYFFDTIKDYIKEDNEDVAIEIKNVYERFLKTYGSFITSKRLAAFDDEDILTDS- 478 Query: 421 LLDSSSRFLGEQDGILDLETGQKV-----KPTKELYITKSTGTPFV-EGEPSQEFLDLVS 474 + + + + +++ + + + ++ K + E + S + + Sbjct: 479 ---ADACYKFYANCFVEITASKIRIKPYEELSGYVWSHKMLDREYHIERQSSNLYEQYLI 535 Query: 475 GYFESEEVMD-YFTRCVGMALLGGNKAQRFIHIR---------GVGGSGKSTLMNLIKYA 524 +D + +G N A R + GGSGK+ L+ Sbjct: 536 NSTSVTGKIDPHVKNIIGWLCHDYNSAARLYMVVMTERVLDPKEGGGSGKNIFAGLLANV 595 Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGG 584 G + N + + I+ +K Sbjct: 596 IGM-STASGSMVKWDDKFYAVWKPGNR-----------LYFVPDLPKVIDWTFLKNAIEN 643 Query: 585 DCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFD 633 + Y + TP ++ N + + D RR ++ F Sbjct: 644 PLI--NKKY-DREISINMQETPKLLLNTNYSFADVDGGLKRRIRIVEFT 689 >gi|273809763|ref|YP_003344883.1| hypothetical protein [Streptococcus phage ALQ13.2] gi|224812515|gb|ACN64908.1| unknown [Streptococcus phage ALQ13.2] Length = 271 Score = 65.3 bits (157), Expect = 4e-08, Method: Composition-based stats. Identities = 33/282 (11%), Positives = 64/282 (22%), Gaps = 31/282 (10%) Query: 8 EQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLL-SSEKIDK-L---PACGFGFVCGVGE 62 + A G+ +IP+ K P + ++ + I + P Sbjct: 5 DYAINYQRMGYSVIPISKNGKTPLIS--FADKPPMTENDIRRVWRDNPDANIALKT---- 58 Query: 63 QPLYAFDID-SKDEKTANTFKDTFE-ILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120 + D+D D ++ L + I I + + Sbjct: 59 DTFFVIDVDMHGDVDGLTNLRNWEHARLIPKTLQAITPSGGRHIYLKKDPNHP--ISQNI 116 Query: 121 STQGHLDILGC-GQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQE 179 +DI Y + + +K Y W T ++ L K E Sbjct: 117 GMIEGVDIKAHVNNYILVPPSN-NSKGYYEWDTVHSPKD-GSITEAPLALIKVLQKMKPE 174 Query: 180 ITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIP--VVMAVH 237 V S T T G + + V + Sbjct: 175 PLNYEVSSFASDSVRSTKTTKLFESI-----------LLGFGDKGGRNNALAEFVGGLLL 223 Query: 238 HETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGD 279 + ++ F + + +EI Sbjct: 224 RGVDPEITYHLAKMANNNTKEPLGDKEFERTFKSMLDKEIRR 265 >gi|254441073|ref|ZP_05054566.1| hypothetical protein OA307_488 [Octadecabacter antarcticus 307] gi|198251151|gb|EDY75466.1| hypothetical protein OA307_488 [Octadecabacter antarcticus 307] Length = 549 Score = 64.9 bits (156), Expect = 5e-08, Method: Composition-based stats. Identities = 25/168 (14%), Positives = 51/168 (30%), Gaps = 14/168 (8%) Query: 469 FLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVG--GSGKSTLMNLIKYAFG 526 F D +S E + + L K ++ + G+GK+TL ++ K FG Sbjct: 197 FWDFLSYVIPVENERETLINWLAWVLQNEGKKPKWAILLYSQKQGTGKTTLTDVCKALFG 256 Query: 527 NQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDC 586 + L +++ + +A +IK + D Sbjct: 257 PANTGKTN--------GVSKLVGRFNKEVLDNKLVIVEEVEVKKGSTDANRIKTLITEDS 308 Query: 587 MTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK 634 + ++ + + N D RR+ ++ FD Sbjct: 309 TMVEAKFMPSHDQIIHCA-FVMTTNHLPLWLEEAD---RRFFILNFDH 352 >gi|323448180|gb|EGB04082.1| hypothetical protein AURANDRAFT_67508 [Aureococcus anophagefferens] Length = 319 Score = 64.5 bits (155), Expect = 6e-08, Method: Composition-based stats. Identities = 52/324 (16%), Positives = 97/324 (29%), Gaps = 51/324 (15%) Query: 449 ELYITKSTGTPFVEGEPSQEFLDLVSGYFES--------EEVMDYFTRCVGMALLGGNKA 500 +++++ S G + + S E +D+ + + ++ + L N Sbjct: 10 DVFLSWSCGYDYPQEPISDEIIDIFETWLDKYARAANETVDMKADIKTMIVETLCDKNSK 69 Query: 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSR 560 +R + G GG+GKS L NL+ G V + + EA NP + R+ R Sbjct: 70 ERAFFLMGEGGNGKSVLCNLLCNLLGEYAVNVPFETLT---KSIEAEGKNPFIKRMRYKR 126 Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGN--TYSESPASFTPFIVPN-KHLFVR 617 V + T D + R + +F N + + Sbjct: 127 CVCSTTLA-------------TNKDEIRCRDLHEKLQDQKPFYGTFKIIHPFNGESIQFS 173 Query: 618 NP-DDAWWRRYIVIPFDKPIAN-------------RDASFAQKLETKYTLEAKKWFLKGV 663 D A RR RD KLE +T KW K + Sbjct: 174 GAVDYATKRRITCQQAPNRFVEGYDSENKDENILPRDYELIDKLEL-FTPYLWKWLEKDI 232 Query: 664 KAYISKGLDVDIPEVCLKAKE--EERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEY 721 K Y GL + +K+ + + + + + N + + Sbjct: 233 KDYYKNGL-PTYSDDFMKSTRLGDFQNKCNRELSLFYSVVEEDPNSTVTLQDV------W 285 Query: 722 REQELNYDRKRISTRTVTLNLKQK 745 + +K + + V + Sbjct: 286 AKVANGTVKKTVFWKAVKDAFVGR 309 >gi|154416640|ref|XP_001581342.1| hypothetical protein [Trichomonas vaginalis G3] gi|121915568|gb|EAY20356.1| hypothetical protein TVAG_193320 [Trichomonas vaginalis G3] Length = 263 Score = 64.5 bits (155), Expect = 6e-08, Method: Composition-based stats. Identities = 40/258 (15%), Positives = 76/258 (29%), Gaps = 32/258 (12%) Query: 496 GGNKAQRFIHIRGVGGSGKSTLM-NLIKYAF-GNQYVINAEASDIMQNRPPEAGKANPSL 553 K + + I G G+GK+T +++ G +I N S+ Sbjct: 15 PSAKNETALIIIGKQGTGKNTFFTDILCKLLEGYSNPNMTNLENICGKF-------NSSI 67 Query: 554 IRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKH 613 + + + +N+ +K + Y + + + N Sbjct: 68 ENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAV 127 Query: 614 LFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDV 673 D RRY+V+ +D + L T + + Sbjct: 128 PMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNP 183 Query: 674 D-IPEVCLKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSEYREQELN 727 IP + ++ + + +ID +C D SL SY +Y ++ Sbjct: 184 RQIPHT--EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDSYKQYCQE--- 230 Query: 728 YDRKRISTRTVTLNLKQK 745 Y S RT N+K Sbjct: 231 YGYMTASKRTFLANVKNL 248 >gi|125975319|ref|YP_001039229.1| prophage Lp4 protein 7, DNA replication [Clostridium thermocellum ATCC 27405] gi|125715544|gb|ABN54036.1| prophage Lp4 protein 7, DNA replication [Clostridium thermocellum ATCC 27405] Length = 183 Score = 64.5 bits (155), Expect = 6e-08, Method: Composition-based stats. Identities = 29/170 (17%), Positives = 47/170 (27%), Gaps = 12/170 (7%) Query: 67 AFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHL 126 D+D ++T + + T L T G+ + F+ + L Sbjct: 1 MLDVDDGGDETLSALESTHGKLPDTVTAVTGRGGR-HYVFKYP--RGRSIPNKTKFAPGL 57 Query: 127 DILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDV------EYLFKFFQEI 180 D G V + +Y W F + E + E L F+ Sbjct: 58 DNHSTGGLIVVAPSIHVSDNQYQWLKGHSSFD-KTPAEAPEWLLKLMGREETLLTPFEGS 116 Query: 181 TVPLVKDKKSIIPSKTWTNNN--NRQYTNREITAFLSCFGEEFYNGSHDE 228 ++ + S + T R T I A L N DE Sbjct: 117 SIVAGIKEGSRNSTLTSLAGTMRVRGMTEESIYAALLAENNARCNPPLDE 166 >gi|260664091|ref|ZP_05864944.1| bifunctional DNA primase/polymerase [Lactobacillus jensenii SJ-7A-US] gi|260561977|gb|EEX27946.1| bifunctional DNA primase/polymerase [Lactobacillus jensenii SJ-7A-US] Length = 261 Score = 64.5 bits (155), Expect = 6e-08, Method: Composition-based stats. Identities = 37/275 (13%), Positives = 71/275 (25%), Gaps = 42/275 (15%) Query: 9 QAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQL-LSSEKI----DKLPACGFGFVCGVGEQ 63 AK +GF +IP+ DKRP K+ + L+ ++I + P Sbjct: 7 YAKSYAEHGFSVIPI-GNDKRPLI--KFANKPALTVDEIEAIWKRYPFAKIALKTEQ--- 60 Query: 64 PLYAFDID--SKDEKTANTFKDTF-EILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120 + D+D + + KD + + I FR K ++ Sbjct: 61 -FFVVDVDRHHSEADGLESIKDLNHDEWFKDTLTEITAHGGYHFYFRKPKN--EEITQNI 117 Query: 121 STQGHLDILGC-GQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQE 179 +DI Y V Y W EE ++ + K ++ Sbjct: 118 GWLPGVDIKAHVNNYVVCAPS-----AGYKWLNHKPMKD------APEELIKAINKNKKQ 166 Query: 180 ITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIP--VVMAVH 237 + L + K+ T Q + G + + + ++ Sbjct: 167 ENLSLDQIDNIRFSGKSQTAILFEQIVD-----------GLGETGGRNNALAAFMGGLLY 215 Query: 238 HETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTF 272 K + + Sbjct: 216 RNVDPEKAVKLAILANDATEDKLSSDELIRTVQSM 250 >gi|123184264|ref|XP_001281067.1| hypothetical protein [Trichomonas vaginalis G3] gi|121834842|gb|EAX68137.1| hypothetical protein TVAG_597950 [Trichomonas vaginalis G3] Length = 258 Score = 64.5 bits (155), Expect = 7e-08, Method: Composition-based stats. Identities = 38/254 (14%), Positives = 76/254 (29%), Gaps = 24/254 (9%) Query: 496 GGNKAQRFIHIRGVGGSGKSTLM-NLIKYAF-GNQYVINAEASDIMQNRPPEAGKANPSL 553 K + + I G G+GK+T +++ G +I N S+ Sbjct: 10 PSAKNETALIIIGKQGTGKNTFFTDILCKLLEGYSNPNMTNLENICGKF-------NSSI 62 Query: 554 IRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKH 613 + + + +N+ +K + Y + + + N Sbjct: 63 ENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAV 122 Query: 614 LFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDV 673 D RRY+V+ +D + L T + + Sbjct: 123 PMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNP 178 Query: 674 D-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRK 731 IP + ++ + + +ID+ + + SL SY +Y ++ Y Sbjct: 179 RQIPHT--EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE---YGYM 229 Query: 732 RISTRTVTLNLKQK 745 S RT N+K Sbjct: 230 TASKRTFLANVKSL 243 >gi|183603143|ref|ZP_02712937.2| replication protein [Streptococcus pneumoniae SP195] gi|183572617|gb|EDT93145.1| replication protein [Streptococcus pneumoniae SP195] gi|332072389|gb|EGI82872.1| primase family protein [Streptococcus pneumoniae GA17570] Length = 273 Score = 64.5 bits (155), Expect = 7e-08, Method: Composition-based stats. Identities = 34/275 (12%), Positives = 70/275 (25%), Gaps = 21/275 (7%) Query: 7 KEQAKQAIHNGFKLIPLRLGDKRPQR--LGKWEEQLLSSEK-IDKLPACGFGFVCGVGEQ 63 KE A Q GF +IP+ +K P K E D P Sbjct: 5 KEYALQYQKLGFSVIPINPKNKMPLIDFADKPAMTPSEIENFWDGYPNANIAL----KIT 60 Query: 64 PLYAFDID-SKDEKTANTFKDT--FEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120 + DID + K ++ T + K L F+ E Sbjct: 61 NFFVIDIDKHGKSNGFESLKKWKHLNLIEPTLQAKTASGGKHLFYFKREDEP---ITQMI 117 Query: 121 STQGHLDILGC-GQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQE 179 +DI Y + + Y W + S++ ++ + K + Sbjct: 118 GFLPGVDIKAHENNYVLVAPSATDKGQ-YEW-DLEKSKEGGTMVTPSKDLIQSIKKQY-- 173 Query: 180 ITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIP--VVMAVH 237 + ++ + + F + G ++ + V ++ Sbjct: 174 -GETHGYKYDGKDGLRDLVRRSHTRDRTQTTDLFETIALGFGDEGGRNDKLAKFVGGLLY 232 Query: 238 HETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTF 272 + + + E+ ++ Sbjct: 233 RAVDDGVVVQLARLANANSPNPLPEKEMMRTIESM 267 >gi|123197436|ref|XP_001283791.1| hypothetical protein [Trichomonas vaginalis G3] gi|121843967|gb|EAX70861.1| hypothetical protein TVAG_571710 [Trichomonas vaginalis G3] Length = 263 Score = 64.5 bits (155), Expect = 7e-08, Method: Composition-based stats. Identities = 40/258 (15%), Positives = 76/258 (29%), Gaps = 32/258 (12%) Query: 496 GGNKAQRFIHIRGVGGSGKSTLM-NLIKYAF-GNQYVINAEASDIMQNRPPEAGKANPSL 553 K + + I G G+GK+T +++ G +I N S+ Sbjct: 15 PSAKNETALIIIGKQGTGKNTFFTDILCKLLEGYSNPNMTNLENICGKF-------NSSI 67 Query: 554 IRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKH 613 + + + +N+ +K + Y + + + N Sbjct: 68 ENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNVV 127 Query: 614 LFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDV 673 D RRY+V+ +D + L T + + Sbjct: 128 PMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNP 183 Query: 674 D-IPEVCLKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSEYREQELN 727 IP + ++ + + +ID +C D SL SY +Y ++ Sbjct: 184 RQIPHT--EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDSYKQYCQE--- 230 Query: 728 YDRKRISTRTVTLNLKQK 745 Y S RT N+K Sbjct: 231 YGYMAASKRTFLANVKNL 248 >gi|256851386|ref|ZP_05556775.1| bifunctional DNA primase/polymerase [Lactobacillus jensenii 27-2-CHN] gi|260660810|ref|ZP_05861725.1| bifunctional DNA primase/polymerase [Lactobacillus jensenii 115-3-CHN] gi|282933165|ref|ZP_06338552.1| phage protein [Lactobacillus jensenii 208-1] gi|256616448|gb|EEU21636.1| bifunctional DNA primase/polymerase [Lactobacillus jensenii 27-2-CHN] gi|260548532|gb|EEX24507.1| bifunctional DNA primase/polymerase [Lactobacillus jensenii 115-3-CHN] gi|281302669|gb|EFA94884.1| phage protein [Lactobacillus jensenii 208-1] Length = 261 Score = 64.5 bits (155), Expect = 8e-08, Method: Composition-based stats. Identities = 37/275 (13%), Positives = 71/275 (25%), Gaps = 42/275 (15%) Query: 9 QAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQL-LSSEKI----DKLPACGFGFVCGVGEQ 63 AK +GF +IP+ DKRP K+ + L+ ++I + P Sbjct: 7 YAKSYAEHGFSVIPI-GNDKRPLI--KFANKPALTVDEIEAIWKRYPFAKIALKTEQ--- 60 Query: 64 PLYAFDID--SKDEKTANTFKDTF-EILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120 + D+D + + KD + + I FR K ++ Sbjct: 61 -FFVVDVDRHHSEADGLESIKDLNHDEWFKDTLTEITAHGGYHFYFRKPKN--EEITQNI 117 Query: 121 STQGHLDILGC-GQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQE 179 +DI Y V Y W EE ++ + K ++ Sbjct: 118 GWLPGVDIKAHVNNYVVCAPS-----AGYKWLNHKPMKD------APEELIKAINKNKKQ 166 Query: 180 ITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIP--VVMAVH 237 + L + K+ T Q + G + + + ++ Sbjct: 167 ENLSLDQIDNIRFSGKSQTAILFEQIVD-----------GLGETGGRNNALAAFMGGLLY 215 Query: 238 HETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTF 272 K + + Sbjct: 216 RNVDPEKAVKLAILANDATEDKLSSDELIRTVQSM 250 >gi|260462806|ref|ZP_05811011.1| Bifunctional DNA primase/polymerase [Mesorhizobium opportunistum WSM2075] gi|259031450|gb|EEW32721.1| Bifunctional DNA primase/polymerase [Mesorhizobium opportunistum WSM2075] Length = 226 Score = 64.1 bits (154), Expect = 8e-08, Method: Composition-based stats. Identities = 33/184 (17%), Positives = 53/184 (28%), Gaps = 34/184 (18%) Query: 8 EQAKQAIHNGFKLIPLRLGDK---------RPQRLGK----------------WEEQLLS 42 E A + + G+ +PL G K RP L ++ + Sbjct: 18 EYAIRLLAKGYICVPLCAGGKHLDLQAMEYRPLHLQSRRRDLKELAFQSVAFHLSQKPPT 77 Query: 43 SEKIDKLP---ACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQK 99 + I + A G + G L D D + + K +L+ TPI R Sbjct: 78 GDDIRRWFRKFAGNVGILGGF--SNLLILDFDDAATYLSWSSKHEA-LLNRTPIARSPNG 134 Query: 100 PKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKV 159 + + R + G Y V K Y+W F V Sbjct: 135 FHVYLRTRDPTASSSLYAGMRRIGH---VKALGGYVVGSPSMLKDGSSYSWLKDHSPFDV 191 Query: 160 EDTP 163 + +P Sbjct: 192 DPSP 195 >gi|148993435|ref|ZP_01822952.1| phage protein [Streptococcus pneumoniae SP9-BS68] gi|147927990|gb|EDK79010.1| phage protein [Streptococcus pneumoniae SP9-BS68] Length = 270 Score = 64.1 bits (154), Expect = 8e-08, Method: Composition-based stats. Identities = 34/275 (12%), Positives = 70/275 (25%), Gaps = 21/275 (7%) Query: 7 KEQAKQAIHNGFKLIPLRLGDKRPQR--LGKWEEQLLSSEK-IDKLPACGFGFVCGVGEQ 63 KE A Q GF +IP+ +K P K E D P Sbjct: 2 KEYALQYQKLGFSVIPINPKNKMPLIDFADKPAMTPSEIENFWDGYPNANIAL----KIT 57 Query: 64 PLYAFDID-SKDEKTANTFKDT--FEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120 + DID + K ++ T + K L F+ E Sbjct: 58 NFFVIDIDKHGKSNGFESLKKWKHLNLIEPTLQAKTASGGKHLFYFKREDEP---ITQMI 114 Query: 121 STQGHLDILGC-GQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQE 179 +DI Y + + Y W + S++ ++ + K + Sbjct: 115 GFLPGVDIKAHENNYVLVAPSATDKGQ-YEW-DLEKSKEGGTMVTPSKDLIQSIKKQY-- 170 Query: 180 ITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIP--VVMAVH 237 + ++ + + F + G ++ + V ++ Sbjct: 171 -GETHGYKYDGKDGLRDLVRRSHTRDRTQTTDLFETIALGFGDEGGRNDKLAKFVGGLLY 229 Query: 238 HETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTF 272 + + + E+ ++ Sbjct: 230 RAVDDGVVVQLARLANANSPNPLPEKEMMRTIESM 264 >gi|291442771|ref|ZP_06582161.1| bifunctional DNA primase/polymerase [Streptomyces ghanaensis ATCC 14672] gi|291345666|gb|EFE72622.1| bifunctional DNA primase/polymerase [Streptomyces ghanaensis ATCC 14672] Length = 354 Score = 64.1 bits (154), Expect = 9e-08, Method: Composition-based stats. Identities = 31/205 (15%), Positives = 50/205 (24%), Gaps = 48/205 (23%) Query: 3 VMQWKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEK---------IDKLPA-- 51 M W + G +IP DK P + + + E D Sbjct: 46 AMVW-------LRRGLPVIPCSRVDKGPM-VAGFGRDATAEELAPFSDPRQVWDWWSGRF 97 Query: 52 --CGFGFVCGVGEQ-PLYAFDIDSKDEKTA------------NTFKDTFEILHGTPIVR- 95 G + G G L D+D + E T + + Sbjct: 98 RRAHVGILTGRGAGRGLLVIDLDVRKEGTDLPPEYAYAYSGVDILERMATEAGEPWPDTY 157 Query: 96 --IGQKPKILIPFRMNKEG------IKKKKTTESTQGHLDILGCGQYFVAYNIHP-KTKK 146 I + + FR +EG T +D+ G G +A + Sbjct: 158 SVITPSGGVHLYFRQPEEGPLIGCATGAGPTAPHLGPLIDVRGVGGLVIAAGSYSAAQGI 217 Query: 147 EYTWTTPPHRFKVEDTPLLSEEDVE 171 Y + L +E Sbjct: 218 AYRRMSDSGDRPQP----LPGWLLE 238 >gi|221632575|ref|YP_002521796.1| hypothetical protein trd_0550 [Thermomicrobium roseum DSM 5159] gi|221155705|gb|ACM04832.1| hypothetical protein trd_0550 [Thermomicrobium roseum DSM 5159] Length = 781 Score = 64.1 bits (154), Expect = 9e-08, Method: Composition-based stats. Identities = 34/207 (16%), Positives = 67/207 (32%), Gaps = 22/207 (10%) Query: 7 KEQAKQAIHNGFKLIPLRLGDKRPQR-LGKWEEQLLSSEKIDKLP---ACGFGFVCGVGE 62 ++ A++ G IP G RP ++++L E+++ P A G +CG Sbjct: 9 RQAAQKYQALGLPAIPAYRG--RPLILWQVYQQRLPEPEEVEGWPWSKADGVAVICGHQT 66 Query: 63 --QPLYA-FDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTT 119 + D++ + A + D +V Q+ + + R + +T Sbjct: 67 TFGGFWWCLDVEHQHRVEAERWLDATHPGWRHGLVAESQRNGLHVYCRSRQP----VRTQ 122 Query: 120 ESTQGHLDILGCGQYFVAYNI---HPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKF 176 G DI G G A P ++Y W + F + L D+ + Sbjct: 123 RHEWG--DIKGSGSLVYAPPSRRYKPDATQDYEWLS----FDPTNALQLEPADLPWPTDN 176 Query: 177 FQEITVPLVKDKKSIIPSKTWTNNNNR 203 + + + N + Sbjct: 177 GHQQGPLGQPSLAETLKTTIPVGNRHN 203 >gi|123231276|ref|XP_001286273.1| hypothetical protein [Trichomonas vaginalis G3] gi|121851479|gb|EAX73343.1| hypothetical protein TVAG_347600 [Trichomonas vaginalis G3] Length = 261 Score = 64.1 bits (154), Expect = 9e-08, Method: Composition-based stats. Identities = 38/255 (14%), Positives = 77/255 (30%), Gaps = 24/255 (9%) Query: 495 LGGNKAQRFIHIRGVGGSGKSTLM-NLIKYAF-GNQYVINAEASDIMQNRPPEAGKANPS 552 + K + + I G G+GK+T +++ G +I N S Sbjct: 12 IPSAKNETALIIIGKQGTGKNTFFTDILCKLLEGYSNPNMTNLENICGKF-------NSS 64 Query: 553 LIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612 + + + + +N+ +K + Y + + + N Sbjct: 65 IENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNA 124 Query: 613 HLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLD 672 D RRY+V+ +D + L T + + Sbjct: 125 VPMKLESSD---RRYVVVR-TSEAHMQDTEYFDALSETLTSDFYNHLFSYFMTLDISKFN 180 Query: 673 VD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDR 730 IP + ++ + + +ID+ + + SL SY +Y ++ Y Sbjct: 181 PRQIPHT--EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE---YGY 231 Query: 731 KRISTRTVTLNLKQK 745 S RT N+K Sbjct: 232 MTASKRTFLANVKSL 246 >gi|300116738|ref|YP_003773384.1| primase/DNA polymerase [Hyperthermophilic Archaeal Virus 2] gi|299820253|gb|ADJ54264.1| primase/DNA polymerase [Hyperthermophilic Archaeal Virus 2] Length = 909 Score = 64.1 bits (154), Expect = 9e-08, Method: Composition-based stats. Identities = 94/727 (12%), Positives = 198/727 (27%), Gaps = 112/727 (15%) Query: 17 GFKLIPLRLGDKRPQRLGKWEEQL-LSSEKIDK--LPACGFGFVCGVGEQ-----PLYAF 68 GF +IP+ G K+P W + +S ++++K A G G G L Sbjct: 13 GFNIIPVDKG-KKPLTS--WSTRQRISRDELEKLLEKASGIGIAGGAVNPWSPVAMLAII 69 Query: 69 DIDSKD-----EKTANTFKDTFEILHGTPIVRIGQKP----KILIPFRMNK--------- 110 D+D+ D + + T G R G K FR + Sbjct: 70 DVDNPDVLEKHAELKRIVESTVSWKTGPRCPRCGNKHLDVLNPGHTFRCDSCGAEFTIEE 129 Query: 111 --------------EGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHR 156 K + T + ++IL Y + + +Y W P Sbjct: 130 AKRGIGALVSLDVDTAEKYIRGTVRGR-DVEILVNN-YALIPPSTHPSGVQYEWIRPFDF 187 Query: 157 FKVE-DTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLS 215 L E ++ L + + + + + I K + + I Sbjct: 188 KAPNLGIRALVESELASLLEELGVLKPHVEQPAEGGIGEKLPGSQLRELADSDIIAIKEL 247 Query: 216 CFGEEFYNGSHDEWI-PVVMA-------------VHHETRGSSKGKEIARRWSKQGSTYD 261 W+ A + + + R S +Y Sbjct: 248 LKEAYRPGVRQYVWLFLSGWAAKAGISPVSIAKVLKMLHDETGDEDPVKSRASSIVYSYR 307 Query: 262 EENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHG-KLIPKGLLASRFSDAYNKAMFSIYK 320 + + +FEE+ K + +L + + + Sbjct: 308 KAGIDLTPYASEFEELFGVKPYGLEKEIREEEVKGKTGIQEILEEVLGEEKALEVIKEIE 367 Query: 321 KGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVS----MKEDVF-----DLSE 371 + + + + + I+++ + + KE VF + Sbjct: 368 EKFKVSSPFRDSVIELLDYEKQIYAVANLRKLLVVRARRSEDRLVYKEKVFIGAPTKVVV 427 Query: 372 EPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIF---SITSDLLDSSSRF 428 +K W + V + LEA + + D+L + Sbjct: 428 YYNPVGGVTKYQVTWEVAVRPKPLVIGPALQPEILDRLEAEGLVVASRLARDVLAAIIHA 487 Query: 429 LGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ---------------EFLDLV 473 + G +L+T + + K EPS ++ + Sbjct: 488 YQVR-GRAELKTEIESPGFY-MVDGKLQAVSVEVKEPSPEELKEALLLLNELATKWFKHM 545 Query: 474 SGYFESEEVMDY-FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532 F V+ + A K R++++ G +GK+TL + Sbjct: 546 PDKF--ATVIKWGLIAPFIYAYKQRGKWIRWLYLYGSSKTGKTTLAE----------IAT 593 Query: 533 AEASDIMQNRPPEAGKANPSLIRLMGSRIVI---ISETNENDEINAAKIKQMT--GGDCM 587 + + + G + + RL ++ + ++ + I ++ + + Sbjct: 594 VYLWRLDPGKHHKTGASMDTPARLGHVLSQSTFPVAISEPAGALDKSDIVEIIKASVEGL 653 Query: 588 TARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFD--KPIANRDASFAQ 645 TAR Y + P + + R+ RR+ V+ F + + A+ + Sbjct: 654 TARGKYHRGAYTDIPALAPLVFTSNKYVPRDDT--LLRRFKVLHFTYGERVPEELATEFE 711 Query: 646 KLETKYT 652 Sbjct: 712 SKVKPEL 718 >gi|326800887|ref|YP_004318706.1| VirE protein [Sphingobacterium sp. 21] gi|326551651|gb|ADZ80036.1| VirE protein [Sphingobacterium sp. 21] Length = 972 Score = 64.1 bits (154), Expect = 1e-07, Method: Composition-based stats. Identities = 79/688 (11%), Positives = 185/688 (26%), Gaps = 89/688 (12%) Query: 60 VGEQPLYAFDIDSKDEKTANTFKDTFEILHG-TPIVRIGQKPKILIPFRMN----KEGIK 114 + L D D + ++ + + + + F++N +E K Sbjct: 75 IKHSGLLCLDYDGLSNEDIEDLREKLPQIPEVHAFFKSPSGNGLKVIFKINVNNHEESFK 134 Query: 115 KKKTTESTQGHLD---ILGCGQYFV-AYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDV 170 + + ++D I G A + T + + + P +E Sbjct: 135 QI--PQYLTDNIDMPAIDASGSDVARACFVSWDTNAYFNPKSKTFKCVKTKAPKKAEAAP 192 Query: 171 EYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWI 230 + + P+ + + N + R + + + +D+ Sbjct: 193 DA-------VANPVKATEDLPASERYERIKNLER--VRYCVHQIEQRKIDITDNDYDDRR 243 Query: 231 PVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSL 290 V A+ + A +++ YD ++ +YK F K + F L Sbjct: 244 DVGFALSTLGEDARGLYHKAVQFN---DAYDPKDADYK---FSEALKNCNFKTPAKFFKL 297 Query: 291 FYHHG------KLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIW 344 +HG + I + + + L+ KN I Sbjct: 298 CKNHGILISKPRTIDQAKEEQELKEIIGDEHKADDYITFGLWEEGNIYKSLDLKNKPRIV 357 Query: 345 SLTLDKI-----TASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNV--- 396 S L +I T+ + + + ++F + + + N + S + R+ N Sbjct: 358 SNFLMRILYHVETSDEEAYRMILIRNLFGVEKVIKINTDDFVSAGSFKKVIARKGNFIWL 417 Query: 397 --EENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILD-------------LETG 441 +++ E + +++ + F +GI D + Sbjct: 418 GQDQDLVRLQDKLQREERATSLVSTLGWNKRGSFYAFANGIFDTLENEFLDIDEYGIVEH 477 Query: 442 QKVKPTKELYITKSTGTPFVEGE------------PSQEFLDL---VSGYFESEEVMD-- 484 + +I + + + F F + Sbjct: 478 VYNDHPQNYFIPAMSKIFADKDDLYTNDKKFKYVKSDTTFKQWCGMFCKVFGDNGKIGVL 537 Query: 485 -YFTRCVGMALLGGNKAQR-FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542 Y + + + + G GSGK T++ + FG I Sbjct: 538 FYISAVFSDVIFRAIGHRFPLLFAYGQRGSGKGTMIQSMMRLFGEGQDS------IGLGG 591 Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE--S 600 L + + + + N + + IK + D + + + S Sbjct: 592 ASTVVGFMRKLAQFSNALVWLDEYKNSINPKHIESIKNI--YDRVGYERGKKDNTFQTDS 649 Query: 601 PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF-DKPIANRDASFAQKLETKYTLEA--KK 657 + IV + + P A + R I++ F + + ++ Sbjct: 650 TPIRSAVIVSGQEMPTGEP--ALFMRTILLHFKETKRTEKARDLFKEFTELEEKGISHLT 707 Query: 658 WFLKGVKAYISKGLDVDIPEVCLKAKEE 685 L + K V + ++ Sbjct: 708 VMLLQYRKKFEKSFRETYNRVIRELVKD 735 >gi|303246065|ref|ZP_07332346.1| Bifunctional DNA primase/polymerase [Desulfovibrio fructosovorans JJ] gi|302492461|gb|EFL52332.1| Bifunctional DNA primase/polymerase [Desulfovibrio fructosovorans JJ] Length = 668 Score = 64.1 bits (154), Expect = 1e-07, Method: Composition-based stats. Identities = 34/192 (17%), Positives = 56/192 (29%), Gaps = 31/192 (16%) Query: 27 DKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSK---DEKTANTFKD 83 +KRP + G CG + D+D+ D D Sbjct: 76 EKRPFDRTDFSTDRA-------------GVACGPAS-GVLVLDVDNPRLFDAWMQEKHPD 121 Query: 84 TFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNI-HP 142 E L T VR G + + G ++ S +G DI G G + HP Sbjct: 122 --EPLPMTLKVRTGGHGERFHYYFQYPSGDEQYFCR-SVKGIFDIRGIGGQVLCPGSLHP 178 Query: 143 KTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNN 202 +T+K Y + E P+ +L + ++ D + P + Sbjct: 179 ETRKPYVF--------AEIVPIAPAPF--WLLEMSKKSDGGKKDDDEQSPPDRINEKQIL 228 Query: 203 RQYTNREITAFL 214 + L Sbjct: 229 EIAPLDHFLSNL 240 >gi|123206387|ref|XP_001284914.1| hypothetical protein [Trichomonas vaginalis G3] gi|121847375|gb|EAX71984.1| hypothetical protein TVAG_568990 [Trichomonas vaginalis G3] Length = 263 Score = 64.1 bits (154), Expect = 1e-07, Method: Composition-based stats. Identities = 40/268 (14%), Positives = 79/268 (29%), Gaps = 27/268 (10%) Query: 483 MDYFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLM-NLIKYAF-GNQYVINAEASDIM 539 + Y L K + + I G G+GK+T +++ G +I Sbjct: 3 ISYVW--FANILQHPSAKNETALIIIGKQGTGKNTFFTDILCKLLEGYSNPNMTNLENIC 60 Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599 N S+ + + + +N+ +K + Y + Sbjct: 61 GKF-------NSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVC 113 Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWF 659 + + N D RRY+V+ +D + L T + Sbjct: 114 ENVANFVMVSNNAVPMKLESSD---RRYVVVR-TSEAHMQDTEYFDALSETLTSDFYNHL 169 Query: 660 LKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKS 717 + IP + ++ + + +ID+ + + SL S Sbjct: 170 FSYFMTLDISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFECLDERSLYDS 223 Query: 718 YSEYREQELNYDRKRISTRTVTLNLKQK 745 Y +Y ++ Y S RT N+K Sbjct: 224 YKQYCQE---YGYMTASKRTFLANVKNL 248 >gi|239934320|ref|ZP_04691273.1| hypothetical protein SghaA1_39360 [Streptomyces ghanaensis ATCC 14672] Length = 308 Score = 63.8 bits (153), Expect = 1e-07, Method: Composition-based stats. Identities = 29/194 (14%), Positives = 48/194 (24%), Gaps = 41/194 (21%) Query: 14 IHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEK---------IDKLPA----CGFGFVCGV 60 + G +IP DK P + + + E D G + G Sbjct: 4 LRRGLPVIPCSRVDKGPM-VAGFGRDATAEELAPFSDPRQVWDWWSGRFRRAHVGILTGR 62 Query: 61 GEQ-PLYAFDIDSKDEKTA------------NTFKDTFEILHGTPIVR---IGQKPKILI 104 G L D+D + E T + + I + + Sbjct: 63 GAGRGLLVIDLDVRKEGTDLPPEYAYAYSGVDILERMATEAGEPWPDTYSVITPSGGVHL 122 Query: 105 PFRMNKEG------IKKKKTTESTQGHLDILGCGQYFVAYNIHP-KTKKEYTWTTPPHRF 157 FR +EG T +D+ G G +A + Y + Sbjct: 123 YFRQPEEGPLIGCATGAGPTAPHLGPLIDVRGVGGLVIAAGSYSAAQGIAYRRMSDSGDR 182 Query: 158 KVEDTPLLSEEDVE 171 L +E Sbjct: 183 PQP----LPGWLLE 192 >gi|258539258|ref|YP_003173757.1| phage-related DNA replication protein [Lactobacillus rhamnosus Lc 705] gi|257150934|emb|CAR89906.1| Phage-related protein, DNA replication [Lactobacillus rhamnosus Lc 705] Length = 276 Score = 63.8 bits (153), Expect = 1e-07, Method: Composition-based stats. Identities = 23/177 (12%), Positives = 45/177 (25%), Gaps = 26/177 (14%) Query: 13 AIHNGFKLIPLRLGDKRP-QRLGKWEEQLLSSEKIDKL----PACGFGFVCGVGEQPLYA 67 +GF + PL + P +++ E+ K P G + Sbjct: 12 YQQHGFSVYPLAPATRTPLNGSHGYKDATKDPEQAKKWWGEHPNYNIGLGL----DGVLV 67 Query: 68 FDID---SKDEKTANTFKDTFEI----LHGTPIVRIGQKPKILIPFRMNKEGI----KKK 116 FDID T + + + I F KE Sbjct: 68 FDIDMGHKSGANGNETLAKLSADGRAGQIPSTYIEATPNGGLHIFFTYPKELKLTSRSDL 127 Query: 117 KTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYL 173 + + LD + G + + P K+ + + ++ + Sbjct: 128 FSKNGEKTGLDYIATG--VPVFPSIRENGMY----QPLKGHKITKLAPVPQWLLDEI 178 >gi|209551736|ref|YP_002283653.1| hypothetical protein Rleg2_4165 [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537492|gb|ACI57427.1| hypothetical protein Rleg2_4165 [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 842 Score = 63.8 bits (153), Expect = 1e-07, Method: Composition-based stats. Identities = 36/264 (13%), Positives = 79/264 (29%), Gaps = 20/264 (7%) Query: 64 PLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKP-------------KILIPFRMNK 110 P+ + +ID++ + + G P + I Sbjct: 144 PVLSVEIDARPDAALSELVTVL----GEPTITIHSGGVWTSPDGRQENKIHAHWRLSFPA 199 Query: 111 EGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKT--KKEYTWTTPPHRFKVEDTPLLSEE 168 + + ++ + +L + +HP +T TT K+ +E Sbjct: 200 TRPDELRKLKAVRRAAAMLVDADKSASPLVHPMRWPGSWHTKTTSARMCKIVAEDDFAEI 259 Query: 169 DVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDE 228 D++ + Q V + + + + EI + + DE Sbjct: 260 DLDVAAEALQAALVDRGLQTPGSPAAPSANGFKTEKAWS-EIALLDAARIIPNGDLGWDE 318 Query: 229 WIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFT 288 W + M + + G G E WS++ + +DE +WD + + + + F Sbjct: 319 WNRIGMIFYDASHGDVAGLEAFLSWSEKSAKHDEVAAEARWDHYSSSPPNNLSDRTLLFE 378 Query: 289 SLFYHHGKLIPKGLLASRFSDAYN 312 +P SD ++ Sbjct: 379 MRKVDPLYTLPADSSPVDTSDIFD 402 >gi|123488423|ref|XP_001325160.1| hypothetical protein [Trichomonas vaginalis G3] gi|121908055|gb|EAY12937.1| hypothetical protein TVAG_404830 [Trichomonas vaginalis G3] Length = 895 Score = 63.8 bits (153), Expect = 1e-07, Method: Composition-based stats. Identities = 36/254 (14%), Positives = 76/254 (29%), Gaps = 24/254 (9%) Query: 496 GGNKAQRFIHIRGVGGSGKSTLM-NLIKYAF-GNQYVINAEASDIMQNRPPEAGKANPSL 553 K + + I G G+GK+T +++ G +I N S+ Sbjct: 647 PSAKNETALIIIGKQGTGKNTFFTDILCKLLEGYSNPNMTNLENICGKF-------NSSI 699 Query: 554 IRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKH 613 + + + +N+ +K + Y + + + N Sbjct: 700 ENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAV 759 Query: 614 LFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDV 673 D RRY+V+ +D + L T + + Sbjct: 760 PMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNP 815 Query: 674 D-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRK 731 IP + ++ + + +I++ + + + SL Y +Y ++ Y Sbjct: 816 RQIPHT--EERQTLLEANKSVYELFIEE----SDFVSLDERSLYDLYKQYCQE---YGYM 866 Query: 732 RISTRTVTLNLKQK 745 S RT N+K Sbjct: 867 AASKRTFLANVKSL 880 >gi|211731797|gb|ACJ10118.1| predicted P-loop ATPase [Bacteriophage APSE-3] Length = 666 Score = 63.8 bits (153), Expect = 1e-07, Method: Composition-based stats. Identities = 67/530 (12%), Positives = 144/530 (27%), Gaps = 81/530 (15%) Query: 186 KDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVV--MAVHHETRGS 243 ++ N T ++ + L ++ W+ + +A +TR Sbjct: 121 PKTADDDLTRLVDLQNINDQTFEDLRSALWYPKILNQAENYPSWVDMGNRLAWFKDTRFE 180 Query: 244 SKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLL 303 + K + WS + D E KW R+ + ++F K Sbjct: 181 DEAKTMWLDWSSAAAKGDIEAAEAKWAELRA--------DRTGYQAIFSLAQKAGWVNPG 232 Query: 304 ASRFSDAYNKA-MFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSM 362 A R A F + W +N + I + + Sbjct: 233 AERLKTAVATVDEFDDLTDPT-----ENSKWPTFKRNRT----------SGQIEATIDNA 277 Query: 363 KEDVFDLSEEPEDNNKNSKSPR-FWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDL 421 + V + ++ + + ++ ++E ++ +L Sbjct: 278 AKAVMCADFVGVEIRFDTFRDEIMFAPVGTKEWQTFTDADYSRLRITMEKRGFRAVGREL 337 Query: 422 LDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEE 481 + ++ + KS E + +F +E+ Sbjct: 338 IRDVVLLAAVEN-----------PFDSAMEWLKSL-----EWDGIPRIETFYHTHFGTED 381 Query: 482 ------VMDYFTRCV-GMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534 V Y + G L G KA + G GSGKS+ + ++ + Sbjct: 382 TAYTRAVSRYMWTALAGRVLKPGIKADMVPILVGAQGSGKSSGV----------AALSPD 431 Query: 535 ASDIMQNRPPEAGKANPSLIR-LMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593 + + E L R + G + ISE + IK + Sbjct: 432 PTFFTEISFAEKDD---DLARKMRGCLVAEISELRGLNTKELESIKAFVTRTHEKWIPKF 488 Query: 594 GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTL 653 ++ P N+ F+ + RR++ + + D +K Sbjct: 489 KEFATQFPRRSLSIGTTNEDEFLGDKTG--NRRWLPVE----VGKMDVEGIKKDV----- 537 Query: 654 EAKKWFLKGVKAYISKGLDVDIPEVCLKAK-EEERQG---TDTYQAWIDD 699 + W + + + G+ E E+ + + W+D+ Sbjct: 538 -IQLWA-EARELFNETGIQFQEAEQLANQVHEKYFIKDAWQEIIERWLDE 585 >gi|145354015|ref|XP_001421292.1| predicted protein [Ostreococcus lucimarinus CCE9901] gi|144581529|gb|ABO99585.1| predicted protein [Ostreococcus lucimarinus CCE9901] Length = 423 Score = 63.8 bits (153), Expect = 1e-07, Method: Composition-based stats. Identities = 30/182 (16%), Positives = 54/182 (29%), Gaps = 16/182 (8%) Query: 10 AKQAIHNGFKLIPLRLGDKRPQRLGKW-EEQLLSSEKIDKLPACGFGFVCGVGEQPLYAF 68 A++ NG LIPL DK P + +E +P +G + G + Sbjct: 3 AREF-TNGMHLIPLD-QDKEPTCGRGFLDEANYEQNTQKVIPGEMYGVLTGRP-NRVLVV 59 Query: 69 DIDSKDEKTANTFKDTF---EILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGH 125 D D K + ++ + + F ++E + K T +G Sbjct: 60 DWDCYGGKCEFELTEEMLTRKVGGEGAYIVKTRSGGYHTYFAWDEERVGDWKGTVGIEGF 119 Query: 126 LDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLV 185 +DI G Y V H Y + + P + + + Sbjct: 120 VDIRTTGNYVV--GAHAP---GYELLRG----DINNLPPMPNDLYSFFDGKVGHKVERAD 170 Query: 186 KD 187 + Sbjct: 171 TE 172 >gi|291460141|ref|ZP_06599531.1| RecA-family ATPase [Oribacterium sp. oral taxon 078 str. F0262] gi|291417482|gb|EFE91201.1| RecA-family ATPase [Oribacterium sp. oral taxon 078 str. F0262] Length = 764 Score = 63.4 bits (152), Expect = 1e-07, Method: Composition-based stats. Identities = 31/205 (15%), Positives = 65/205 (31%), Gaps = 16/205 (7%) Query: 225 SHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKR 284 + EWI V MA+ E +S+ +WS+ + Y KW TF E G Sbjct: 19 DYQEWINVGMALKQEGHTASE----WDQWSRADARYKPGECFKKWMTFRNENGGA----P 70 Query: 285 STFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIW 344 T ++ + + ++ Y + +K AW ++ + Sbjct: 71 VTGGTIVEYAKRGGFTLPQRGGETEDYALSWDDTIEKDDLTIV--DSAWLEEREIEEPK- 127 Query: 345 SLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTD----YRRQNVEENS 400 K I+ +L ++ + ++ E + N D + + + + Sbjct: 128 -EEAWKPVQEIITYLQTLFQSTENVGYVTEVYKNEDRLSPKKGNWDRTAGQLIEELRKYN 186 Query: 401 KAKSTAQSLEAGSIFSITSDLLDSS 425 + + I + LD + Sbjct: 187 DVGAVFGDPNPEAGAWIRFNPLDGN 211 >gi|326778039|ref|ZP_08237304.1| Bifunctional DNA primase/polymerase [Streptomyces cf. griseus XylebKG-1] gi|326658372|gb|EGE43218.1| Bifunctional DNA primase/polymerase [Streptomyces cf. griseus XylebKG-1] Length = 319 Score = 63.4 bits (152), Expect = 1e-07, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 29/125 (23%), Gaps = 6/125 (4%) Query: 51 ACGFGFVCGVGEQPLYAFDID-----SKDEKTANTFKDTFEILHGTPIVRIGQKPKILIP 105 A G+G CG L D+D D A + P V + Sbjct: 83 ATGYGIACGRAPHRLIGVDLDIDPSYGSDAAGALRQLGLQHLFTIPPTVTVLTPSGGRHL 142 Query: 106 FRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLL 165 + + +DI G G Y V T Y P Sbjct: 143 WLTGPADATVPNSAGRLAPGIDIRGSGGYLVGPGSV-TTHGRYRLAPGTAHLTPAPCPRA 201 Query: 166 SEEDV 170 + Sbjct: 202 LLRLL 206 >gi|182437403|ref|YP_001825122.1| hypothetical protein SGR_3610 [Streptomyces griseus subsp. griseus NBRC 13350] gi|178465919|dbj|BAG20439.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus NBRC 13350] Length = 319 Score = 63.4 bits (152), Expect = 1e-07, Method: Composition-based stats. Identities = 21/125 (16%), Positives = 29/125 (23%), Gaps = 6/125 (4%) Query: 51 ACGFGFVCGVGEQPLYAFDID-----SKDEKTANTFKDTFEILHGTPIVRIGQKPKILIP 105 A G+G CG L D+D D A + P V + Sbjct: 83 ATGYGIACGRAPHRLIGVDLDIDPSYGSDAAGALRQLGLQHLFTIPPTVTVLTPSGGRHL 142 Query: 106 FRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLL 165 + + +DI G G Y V T Y P Sbjct: 143 WLTGPADATVPNSAGRLAPGIDIRGSGGYLVGPGSV-TTHGRYRLAPGTAHLTPAPCPRA 201 Query: 166 SEEDV 170 + Sbjct: 202 LLRLL 206 >gi|123236497|ref|XP_001286966.1| hypothetical protein [Trichomonas vaginalis G3] gi|121853513|gb|EAX74036.1| hypothetical protein TVAG_501220 [Trichomonas vaginalis G3] Length = 227 Score = 63.4 bits (152), Expect = 2e-07, Method: Composition-based stats. Identities = 31/194 (15%), Positives = 58/194 (29%), Gaps = 16/194 (8%) Query: 469 FLDLVSGYF--ESEEVMDYFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLM-NLIKYA 524 +LD V +E+V +Y L K + + I G G+GK+T +++ Sbjct: 10 WLDHVKEIICNGNEKVYEYILCWFANILQHPSAKNETALIIIGKQGTGKNTFFTDILCKL 69 Query: 525 F-GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTG 583 G +I N S+ + + + +N+ +K + Sbjct: 70 LEGYSNPNMTNLENICGKF-------NSSIENMKLIVCNELQSIDTTKVLNSDALKSLIT 122 Query: 584 GDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASF 643 Y + + + N D RRY+V+ +D + Sbjct: 123 DKVRVVERKYKDQRVCENVANFIMVSSNAVPMKLESSD---RRYVVVR-TSDSHMQDTEY 178 Query: 644 AQKLETKYTLEAKK 657 L T E Sbjct: 179 FDDLAETLTPEFYN 192 >gi|326692266|ref|ZP_08229271.1| prophage DNA replication protein [Leuconostoc argentinum KCTC 3773] Length = 203 Score = 63.0 bits (151), Expect = 2e-07, Method: Composition-based stats. Identities = 26/201 (12%), Positives = 49/201 (24%), Gaps = 23/201 (11%) Query: 8 EQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKL-------PACGFGFVCGV 60 E +Q G + K G + +++ + G Sbjct: 5 EHVRQYQRAGIYVFMALPNQKHNSIEGGFHNSFADGDELRQWITQHPEYQNGNVGIDL-- 62 Query: 61 GEQPLYAFDIDSKDEKTANTFKDTFEILHGTP------IVRIGQKPKILIPFRMNKEGIK 114 + L DID ++ + F+ + P V + + + G Sbjct: 63 SKSNLVVVDIDQHEQNGMASILAWFKSHNVNPDTLQDTYVEQTPTGGLHAFYLIPS-GQD 121 Query: 115 KKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLF 174 K K + +D+L V EY TP + E + Sbjct: 122 KPKHVINAIKGVDVLSNT--AVMTAPSVMKDGEYRQITPFDQ-----IQEAPEWVYQLAN 174 Query: 175 KFFQEITVPLVKDKKSIIPSK 195 T K + + Sbjct: 175 YQGSTNTPSNQKTTRYSNKDR 195 >gi|118465586|ref|YP_879557.1| hypothetical protein MAV_0268 [Mycobacterium avium 104] gi|118166873|gb|ABK67770.1| hypothetical protein MAV_0268 [Mycobacterium avium 104] Length = 978 Score = 63.0 bits (151), Expect = 2e-07, Method: Composition-based stats. Identities = 31/222 (13%), Positives = 60/222 (27%), Gaps = 17/222 (7%) Query: 14 IHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKL---PACGFGFVCG-VGEQPLYAFD 69 + + F ++PL KRP W +E G + G GE+ L A+D Sbjct: 32 LADAFHVLPLERARKRPVN-RGWPTAPALTEAALAWHLDQGGNIGALLGASGERGLIAWD 90 Query: 70 IDSKDEKTANTFKDT----FEILHGTPIVRIGQKPKILIPFRMNKE-------GIKKKKT 118 D+ A P G+ + + E + T Sbjct: 91 ADNAAGAEAIEAAGYTPFAIPANALNPNHSKGRYGGRHFLWSVPAEWAVPGMELTSPRAT 150 Query: 119 TESTQGH-LDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFF 177 G +D+L ++ V + + P + PL + +++ Sbjct: 151 VTLAGGGTVDVLAGPKFLVLPPSYLCEEGHLNPYNPGAGWTPSPPPLPVQFWPDWVRPEG 210 Query: 178 QEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGE 219 + + I +T + + A Sbjct: 211 TPDPPAELAALRVDIRKRTAFERAEDRMLSAGSRALTELIDA 252 >gi|333025828|ref|ZP_08453892.1| hypothetical protein STTU_3331 [Streptomyces sp. Tu6071] gi|332745680|gb|EGJ76121.1| hypothetical protein STTU_3331 [Streptomyces sp. Tu6071] Length = 240 Score = 63.0 bits (151), Expect = 2e-07, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 30/98 (30%), Gaps = 3/98 (3%) Query: 51 ACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHG---TPIVRIGQKPKILIPFR 107 A G+G CG+ L D+D+K HG VR+ + Sbjct: 12 ASGYGIACGLAPYHLIGLDLDTKHGADPLRALALLGARHGFVLPATVRVATPSGGAHLWL 71 Query: 108 MNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTK 145 G+ + + +D+ G G Y V Sbjct: 72 SAPAGLTVRNSASRLAPGIDVRGTGGYLVGPGSRTTRG 109 >gi|302520426|ref|ZP_07272768.1| conserved hypothetical protein [Streptomyces sp. SPB78] gi|302429321|gb|EFL01137.1| conserved hypothetical protein [Streptomyces sp. SPB78] Length = 334 Score = 63.0 bits (151), Expect = 2e-07, Method: Composition-based stats. Identities = 19/98 (19%), Positives = 30/98 (30%), Gaps = 3/98 (3%) Query: 51 ACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHG---TPIVRIGQKPKILIPFR 107 A G+G CG+ L D+D+K HG VR+ + Sbjct: 106 ASGYGIACGLAPYHLIGLDLDTKHGADPLRALALLGARHGFVLPATVRVATPSGGAHLWL 165 Query: 108 MNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTK 145 G+ + + +D+ G G Y V Sbjct: 166 SAPAGLTVRNSASRLAPGIDVRGTGGYLVGPGSRTTRG 203 >gi|307149666|ref|YP_003891036.1| hypothetical protein Cyan7822_6660 [Cyanothece sp. PCC 7822] gi|306986795|gb|ADN18671.1| hypothetical protein Cyan7822_6660 [Cyanothece sp. PCC 7822] Length = 1328 Score = 63.0 bits (151), Expect = 2e-07, Method: Composition-based stats. Identities = 95/742 (12%), Positives = 201/742 (27%), Gaps = 154/742 (20%) Query: 26 GDKRP--QRLGKWEEQLLSSEKIDKL---PACGFGFVCGVGEQPLYAFDID----SKDEK 76 +P +++ QL S+ + K P G G + G ++ D+D + Sbjct: 97 EKGKPHLVNHRQYQNQLPSAIDLKKWFAHPDNGIGTLGG--HNGVHWIDLDLHQFPNQAE 154 Query: 77 TANTFKDTFEILHGT--PIVRIGQKPKILIPFRMNK-EGIKKKKTTESTQGHLDILGCGQ 133 F E ++ I Q I R+ K G T+ + LG G+ Sbjct: 155 CEQAFWSILERQPALQNTLLEITQSDGYRIGVRVKKNPGFTNFSLTQGGTHVGECLGEGR 214 Query: 134 YFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIP 193 + V + K Y P + L+ +++++++ ++ T L + ++ Sbjct: 215 FTVLSPTIGPSGKPYRNLNLPDK-------LVEIDEIDFIYSTKKDNTSSLAESSPKLLF 267 Query: 194 SKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRW 253 S T+NN E+ A +D+ H T + W Sbjct: 268 SPQSTSNNIPGSIPLEMLAHNGVQQIINGVDLYDDRS------HSLTATIKELFG-WENW 320 Query: 254 SKQ-GSTY-----------------DEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHG 295 G Y D + + D + +A S + Sbjct: 321 CNTNGIAYRGTALELIQYAGERLGIDADRIERIIKSVDNPALCTSAAYHKGGDSSCWLKI 380 Query: 296 KLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWY-------------------KK 336 + K ++ ++ + + K ++++ Y Sbjct: 381 SKLDKPTFEAKCPADISQQIKAEQKNWAKQHSSNGNGNYSPPGNGGDSGGNDDNHNRLSY 440 Query: 337 DKNNVYIWSL--TLDKI------------------------------------TASIMNF 358 KN W+ K + Sbjct: 441 WKNAPTSWAGEIGYWKEKKKPIKDINGTIVGEQSESEFIPKCNFDFQIERELTDSEGGGI 500 Query: 359 LVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR-----QNVEENSKAKSTAQSLEAGS 413 L+ +K L + N ++ + + + N + N ++ S +L A Sbjct: 501 LIQIKRVFDKLQKSLLIRNADTLTAKDFNNALVKLYGNGITNNLSTAELNSFIHNLRAYY 560 Query: 414 IFS------ITSDLLDSSSRFLGEQDGILDLETGQKVKPTK----------ELYITKSTG 457 + + + + + D + + E I T Sbjct: 561 HYRGGKTYQLAERIGQQDNGTYVFSNCQFDKKGNPLSEEVSGIIFNSNLGLEDKIPSPTI 620 Query: 458 TPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRF--------IHIRGV 509 P ++ + + +++ +G G + + ++ G Sbjct: 621 LPPDPSA-LPRLVNAMIKFHGRSQIIPAMF-HLGYVAAGIHYQEIMKSEGRFPILNAYGD 678 Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569 GS K+ G A ++L GS ++ + ++ Sbjct: 679 AGSLKTVSAENALSLVGWVNG--------NGTFVRITESACYERLKLTGSLPLLFDDPDK 730 Query: 570 NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIV 629 +D +N I+++ G AR GN + N + + A R + Sbjct: 731 SDWLND-LIQRIYNG---RAREVRGNMQV---PHSPVIVTSNFL--IGDNKPACLSR--I 779 Query: 630 IPFDKPI-ANRDASFAQKLETK 650 IP + D S +LE Sbjct: 780 IPLYHEFNGDGDPSAWDELEQA 801 >gi|239942767|ref|ZP_04694704.1| hypothetical protein SrosN15_17369 [Streptomyces roseosporus NRRL 15998] gi|239989226|ref|ZP_04709890.1| hypothetical protein SrosN1_18136 [Streptomyces roseosporus NRRL 11379] gi|291446237|ref|ZP_06585627.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] gi|291349184|gb|EFE76088.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] Length = 303 Score = 63.0 bits (151), Expect = 2e-07, Method: Composition-based stats. Identities = 18/102 (17%), Positives = 26/102 (25%), Gaps = 5/102 (4%) Query: 51 ACGFGFVCGVGEQPLYAFDIDS-----KDEKTANTFKDTFEILHGTPIVRIGQKPKILIP 105 A G+G CG L D+D D A + P V + Sbjct: 81 ATGYGIACGRAPHRLIGIDLDVDPAYGSDAAGALRQLALQHLFTIPPTVTVLTPSGGRHL 140 Query: 106 FRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKE 147 + + +DI G G Y V + Sbjct: 141 WLTGPADATVPNSAGRLAPGIDIRGTGGYLVGPGSVTAHGRY 182 >gi|326446239|ref|ZP_08220973.1| hypothetical protein SclaA2_34472 [Streptomyces clavuligerus ATCC 27064] Length = 333 Score = 62.6 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 36/256 (14%), Positives = 54/256 (21%), Gaps = 71/256 (27%) Query: 21 IPLRLGDKRPQRL-----------------------GKWEEQLLSSEKIDKL----PACG 53 PL G K P + I P G Sbjct: 2 HPLAPGRKTPAPNCGDCRDRPHPPQECDCIPAGRWCHGFHAATTDPALITAWWTRQPRFG 61 Query: 54 FGFVCGVGEQPLYAFDIDSKDEKT-----------------------ANTFKDTFEILHG 90 G CG L D+D+ L G Sbjct: 62 VGVACGPA--GLVVIDVDAHPAPLPTPDRLLPGIHIPESVCLDGLRHGFHSLAVLAALRG 119 Query: 91 TP---------IVRIGQKPKILIPFRMNKEGIKKKKTTESTQ---GHLDILGCGQYFVAY 138 P VR L + + + + +D+ G Y +A Sbjct: 120 RPDPSQDESTLRVRTPSGGLHLWYTARPGQEWRCSTGSGVNRALAWQVDVRAHGGYIIAP 179 Query: 139 NIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWT 198 + + YT P V L + L + P + +PS+ W Sbjct: 180 GTRTASGR-YTACGP-----VRRPAPLPDWLAAELERTGHRPVPPHPRTAT-PVPSRAWA 232 Query: 199 NNNNRQYTNREITAFL 214 N + L Sbjct: 233 AVNAARGGRDSAARVL 248 >gi|48843595|ref|YP_025168.1| helicase [Neodiprion sertifer NPV] gi|37626280|gb|AAQ96438.1| helicase [Neodiprion sertifer NPV] Length = 1143 Score = 62.6 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 56/484 (11%), Positives = 130/484 (26%), Gaps = 58/484 (11%) Query: 334 YKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR 393 Y D N+ + + + N L++ K DV + +++ Sbjct: 670 YLSDDNDNKLIEALGETVFDINANLLINRKNDVLKNLTSLTQMKNIKQLISHIYDSSLWS 729 Query: 394 QNVEENSKAKSTAQSLEAGSIFSITSDLLDS------------SSRFLGEQDGI-----L 436 +NV + + S LLD L + + Sbjct: 730 KNVLLIQNEIDPTRKKFKSDVVDNPSVLLDQLVQQLTICNIWKDKLILPVSNETTLQWLI 789 Query: 437 DLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLG 496 + + E L + + + + Y + Sbjct: 790 RFYMRCIFPHLRGFVNYATNPHMINIAEAYCYMLIANNFAY---DHVLYLLTFAASLNIP 846 Query: 497 GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRL 556 N + + + G +GK++ ++ G V + + NR + S Sbjct: 847 QNYEKLLLVLTGSSNAGKTSFIS----LLGKIAVKMPSNTLFIDNRGNGPSEMEFSRAIS 902 Query: 557 MGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV 616 I + +T + N A + + + R + + + P + N+ L + Sbjct: 903 QLYEINEVHKTTAENIKNTADLSR-----EVVVRHAHS-ACQKIMLQYKPILCNNRMLEI 956 Query: 617 RNPDDAWWRRYIVIPFDKPIANRD-------ASFAQKLETKYTLEA---KKWFLKGVKAY 666 N D A R I++ +D + + K + + + + + Sbjct: 957 ENCDKAVENRLIIVYYDHVFEKKVVFSGSIYEHYITKHYPDELINIGDSFRVLVSYMLIH 1016 Query: 667 ISKG-------LDVDIPEVCLK-----AKEEERQGTDTYQAWIDDCCDIGENLWEESHSL 714 + P + + D +D NLW + +L Sbjct: 1017 YKDNKTNLISSRRMLTPRMIKNIKTVSVMNIFAEAIDYI---LDVQMTDDPNLWIDVETL 1073 Query: 715 AKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPA 774 + Y + L +S + +T ++ F + E + L++ Sbjct: 1074 KDVFL-YVPKILQTI--CVSKKMITQEECEEMFYSRHVDKYYENADSMGKNYYRLQINTN 1130 Query: 775 FESV 778 + + Sbjct: 1131 LDKI 1134 >gi|94990319|ref|YP_598419.1| phage protein [Streptococcus phage 10270.2] gi|94543827|gb|ABF33875.1| phage protein [Streptococcus phage 10270.2] Length = 270 Score = 62.6 bits (150), Expect = 2e-07, Method: Composition-based stats. Identities = 34/267 (12%), Positives = 66/267 (24%), Gaps = 25/267 (9%) Query: 8 EQAKQAIHNGFKLIPLRLGDKRP----QRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQ 63 + A GF +IP+ K+P + E L P Sbjct: 6 DYAIYYQQKGFSVIPISKDGKKPLVAFADKPAFTEHELRL-IWKDNPDANIALRT----D 60 Query: 64 PLYAFDIDSKDEKTANTFKDTFE--ILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTES 121 + DID + +E L + I + + Sbjct: 61 SFFVIDIDVHNGVDGLKNLREWEHARLIPKTLQATTPSGGRHIYLKKPQG--VSMAQNIG 118 Query: 122 TQGHLDILGC-GQYFVAYNIHPKTKKEYTW--TTPPHRFKVEDTPLLSEEDVEYLFKFFQ 178 +D+ Y + + K Y W P ++ + PL + L ++ Sbjct: 119 FIDGVDLKAHVNNYVLVPPSN-NAKGMYEWDMVHSPTSGEMTEAPLELINVLRELRPAYE 177 Query: 179 ------EITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPV 232 +K + + + N + F+ N + + Sbjct: 178 YDASSFTSGDYQGSNKTAKLFETIVLGFGDTGGRNNALAEFVGGLL--LRNVDVEIAYTL 235 Query: 233 VMAVHHETRGSSKGKEIARRWSKQGST 259 +H+T KE R + Sbjct: 236 AKMANHKTADPLSDKEFERTFKSMCDK 262 >gi|94988181|ref|YP_596282.1| phage protein [Streptococcus phage 9429.1] gi|94990061|ref|YP_598161.1| phage protein [Streptococcus phage 10270.1] gi|94993973|ref|YP_602071.1| phage protein [Streptococcus phage 10750.1] gi|94541689|gb|ABF31738.1| phage protein [Streptococcus phage 9429.1] gi|94543569|gb|ABF33617.1| phage protein [Streptococcus phage 10270.1] gi|94547481|gb|ABF37527.1| phage protein [Streptococcus phage 10750.1] Length = 270 Score = 62.6 bits (150), Expect = 3e-07, Method: Composition-based stats. Identities = 32/281 (11%), Positives = 68/281 (24%), Gaps = 25/281 (8%) Query: 8 EQAKQAIHNGFKLIPLRLGDKRP----QRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQ 63 + A GF +IP+ K+P + E L P Sbjct: 6 DYAIYYQQKGFSVIPISKDGKKPLVAFADKPAFTEHELRL-LWKDNPDANIALRT----D 60 Query: 64 PLYAFDIDSKDEKTANTFKDTFE--ILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTES 121 + DID + +E L + I + + Sbjct: 61 SFFVIDIDVHNGVDGLKNLREWEHARLIPKTLQATTPSGGRHIYLKKPQG--VSMAQNIG 118 Query: 122 TQGHLDILGC-GQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEI 180 +D+ Y + + K Y W S E E + + Sbjct: 119 FVDGVDLKAHVNNYVLVPPSN-NAKGMYVWDKVHSPT--------SGEMTEAPLELITVL 169 Query: 181 TVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHET 240 + + + + T L N S E++ + + + Sbjct: 170 QELKPAYEYDASSFTSGDYQGSNKTAKLFETIVLGFGDTGGRNNSLAEFVG-GLLLRNVD 228 Query: 241 RGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTA 281 + K +++ F+ + + +E+ + Sbjct: 229 VEIAYTLAK-MANHKTVDPLNDKEFDRTFKSMCDKELRRRS 268 >gi|325284423|ref|YP_004256963.1| Bifunctional DNA primase/polymerase [Deinococcus proteolyticus MRP] gi|324316487|gb|ADY27600.1| Bifunctional DNA primase/polymerase [Deinococcus proteolyticus MRP] Length = 370 Score = 62.6 bits (150), Expect = 3e-07, Method: Composition-based stats. Identities = 35/253 (13%), Positives = 63/253 (24%), Gaps = 49/253 (19%) Query: 17 GFKLIPLRLGDKRP------------------QRLGKWEEQLLSSEKIDKL---PACGFG 55 G+ ++P+ KRP + Q + +E + G Sbjct: 14 GWNVLPVDH-HKRPHRRLTLTGHSQTRDGKTAPSWKPLQTQRVQTEWLHTWFTPDVPGLA 72 Query: 56 FVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKK 115 V G L D D + + G + + F ++ Sbjct: 73 AVTGAISS-LVVLDFDGEAGW--ALLRKW-----GLSPNALSGSGSPHVYFEHPGWHVRT 124 Query: 116 KKTTESTQG---HLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEY 172 + LD+ G V H + Y V+ P V Sbjct: 125 VASGSLKNPPFPGLDVRADGGMIVLPPSH-LSNGAYR-MLDVSPQPVDTLPEA----VAL 178 Query: 173 LFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPV 232 V L + P +N+ + E S + N + W+ Sbjct: 179 WVGLLPTPAVTLPE-----APLPEAGTDNDLRALLDEAV---SRSAQGRNNAGY--WLAR 228 Query: 233 VMAVHHETRGSSK 245 +A TR ++ Sbjct: 229 QLAAQGLTRSDAE 241 >gi|302538857|ref|ZP_07291199.1| bifunctional DNA primase/polymerase [Streptomyces sp. C] gi|302447752|gb|EFL19568.1| bifunctional DNA primase/polymerase [Streptomyces sp. C] Length = 347 Score = 62.6 bits (150), Expect = 3e-07, Method: Composition-based stats. Identities = 27/214 (12%), Positives = 42/214 (19%), Gaps = 65/214 (30%) Query: 10 AKQAIHNGFKLIPLRLGDKRPQRL-----------------------GKWEEQLLSSEKI 46 A G + PL G K P + + I Sbjct: 2 ALWLAARGMPVHPLAPGTKTPAGNCAACREQQHAPADCPCTARGRWCHGFHAATTDAAVI 61 Query: 47 DKL----PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDT----FEILHGTPIVRIG- 97 P G CG L D+D+ + + + +R G Sbjct: 62 RDWWRQEPGFGVAVSCGPA--GLVVIDVDTHPAELPERGRLLPGIPIDDRVDLTGLRSGY 119 Query: 98 --------------------------QKPKILIPFRMN--KEGIKKKKTTESTQ---GHL 126 + I +R I+ T S + Sbjct: 120 DTLALLAAVRRRPDPAQDTATLRVRTPSGGLHIWYRAPLGGPAIRSSTGTGSRTALAWQV 179 Query: 127 DILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVE 160 D+ G Y VA + Sbjct: 180 DVRATGGYIVAPGTRTAHGTYEALPGSRTPAPLP 213 >gi|119476603|ref|ZP_01616913.1| hypothetical protein GP2143_03203 [marine gamma proteobacterium HTCC2143] gi|119449859|gb|EAW31095.1| hypothetical protein GP2143_03203 [marine gamma proteobacterium HTCC2143] Length = 164 Score = 62.6 bits (150), Expect = 3e-07, Method: Composition-based stats. Identities = 23/158 (14%), Positives = 43/158 (27%), Gaps = 22/158 (13%) Query: 6 WKEQAKQAIHNGFKLIPLRLGDKR---PQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGE 62 WK + + +P+ W ++ +++ G GFV V Sbjct: 23 WKAVVRP--NGKITKVPMNPLTGIKASSINSKTWASFDKAATGMNRHGYDGIGFVF-VRG 79 Query: 63 QPLYAFDIDS---KDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTT 119 L D+D+ + +D + L V +I + K Sbjct: 80 DGLVGVDLDNCMRSHGQLETWAQDIVDRLDSYTEVSPSGNGVHIICYSGASGLSYNKDGR 139 Query: 120 ESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRF 157 ++ G+YF T EY + Sbjct: 140 -------EMYSEGRYFTV------TGNEYYVRGHSNEN 164 >gi|254385241|ref|ZP_05000572.1| conserved hypothetical protein [Streptomyces sp. Mg1] gi|194344117|gb|EDX25083.1| conserved hypothetical protein [Streptomyces sp. Mg1] Length = 367 Score = 62.6 bits (150), Expect = 3e-07, Method: Composition-based stats. Identities = 30/188 (15%), Positives = 48/188 (25%), Gaps = 63/188 (33%) Query: 10 AKQAIHNGFKLIPLRLGDKRPQ----------------------RL-GKWEEQLLSSEKI 46 A+ NG+ + PL G K P R + L E+I Sbjct: 27 ARWCASNGWPVHPLAPGRKTPAANCRECSQPGHTRTGCLCPAAGRWCHGFHAATLDYERI 86 Query: 47 DKL----PACGFGFVCGVGEQPLYAFDID-------SKDEKT----------------AN 79 D+ P+ G CG L DID +D+ Sbjct: 87 DQWWGKTPSLGVAVACGPA--GLVVIDIDAHQSEPPHRDKVLPGIPIGEHIDLSGMTTGY 144 Query: 80 TFKDTFEILHGTP-------IVRI-GQKPKILIPFRMNKEGI---KKKKTTESTQGHLDI 128 L G P +R+ + + +R + +D+ Sbjct: 145 HSLAVLAALRGEPSPAEDTSTLRVRTPSGGLHVWYRATDGRRWQCSTGSGKRALAWQVDV 204 Query: 129 LGCGQYFV 136 G Y + Sbjct: 205 RAHGGYII 212 >gi|325963608|ref|YP_004241514.1| DNA primase/polymerase-like protein [Arthrobacter phenanthrenivorans Sphe3] gi|323469695|gb|ADX73380.1| DNA primase/polymerase-like protein [Arthrobacter phenanthrenivorans Sphe3] Length = 310 Score = 62.6 bits (150), Expect = 3e-07, Method: Composition-based stats. Identities = 19/140 (13%), Positives = 41/140 (29%), Gaps = 14/140 (10%) Query: 10 AKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKL----PACGFGFVCGVGEQPL 65 A+ G + P + KRP + + E++ P G G + Sbjct: 24 ARSLAAAGVPVFPCVVEGKRPLTRRGFLDASSDPEQVAAWWSRTPNANIGIPTGAPSGVV 83 Query: 66 YAFD-----IDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120 D + T + G ++ + F +++++ + Sbjct: 84 VVDVDVHGPHDGRAAFQRATDAGLVD---GAGLLVRTPTGGAHVYF--PATPGREQRSWQ 138 Query: 121 STQGHLDILGCGQYFVAYNI 140 + +D G G Y +A Sbjct: 139 AATAGVDFRGDGGYIIAPPS 158 >gi|318061648|ref|ZP_07980369.1| hypothetical protein SSA3_27160 [Streptomyces sp. SA3_actG] gi|318078252|ref|ZP_07985584.1| hypothetical protein SSA3_16412 [Streptomyces sp. SA3_actF] Length = 249 Score = 62.2 bits (149), Expect = 3e-07, Method: Composition-based stats. Identities = 18/98 (18%), Positives = 30/98 (30%), Gaps = 3/98 (3%) Query: 51 ACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHG---TPIVRIGQKPKILIPFR 107 + G+G CG+ L D+D+K HG VR+ + Sbjct: 21 SSGYGIACGLAPYHLIGLDLDTKHGADPLRALALLGARHGFVLPATVRVATPSGGAHLWL 80 Query: 108 MNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTK 145 G+ + + +D+ G G Y V Sbjct: 81 SAPAGLTVRNSASRLAPGIDVRGTGGYLVGPGSRTTRG 118 >gi|119953768|ref|YP_950573.1| replication protein [Streptococcus phage SMP] gi|118430580|gb|ABK91904.1| replication protein [Streptococcus phage SMP] Length = 275 Score = 62.2 bits (149), Expect = 3e-07, Method: Composition-based stats. Identities = 26/190 (13%), Positives = 55/190 (28%), Gaps = 20/190 (10%) Query: 7 KEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLL-SSEKID----KLPACGFGFVCGVG 61 K+ A GF +IP+ +K+P K+ ++ ++++I+ + P Sbjct: 4 KKAALAYQKKGFSVIPISPSNKQPMI--KFADKPAMTAQEIEDFWSQYPDSNIAVRT--- 58 Query: 62 EQPLYAFDID-SKDEKTANTFKDT--FEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKT 118 + DID + ++ T + K + F+ + Sbjct: 59 -DKFFVIDIDLHGKHNGYESLAKWEHLNLITPTLQAKTASGGKHIFYFKHPDVSM---TQ 114 Query: 119 TESTQGHLDILGC-GQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFF 177 +D+ Y V EY W + S V + + + Sbjct: 115 MIGFLPGVDVKAHPNNYVVVAPSKTPNG-EYAW-DLEKSKEGGTMVTASRALVMAIKQEY 172 Query: 178 QEITVPLVKD 187 + D Sbjct: 173 LKKNNRSELD 182 >gi|123262753|ref|XP_001289401.1| hypothetical protein [Trichomonas vaginalis G3] gi|121860343|gb|EAX76471.1| hypothetical protein TVAG_289810 [Trichomonas vaginalis G3] Length = 263 Score = 62.2 bits (149), Expect = 3e-07, Method: Composition-based stats. Identities = 38/262 (14%), Positives = 77/262 (29%), Gaps = 25/262 (9%) Query: 489 CVGMAL-LGGNKAQRFIHIRGVGGSGKSTLM-NLIKYAF-GNQYVINAEASDIMQNRPPE 545 L K + + + G G+GK+T +++ G +I Sbjct: 7 WFANILQHPSAKNETALIVIGKQGTGKNTFFTDILCKLLEGYSNPNMTNLENICGKF--- 63 Query: 546 AGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFT 605 N S+ + + + +N+ +K + Y + + Sbjct: 64 ----NSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANF 119 Query: 606 PFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKA 665 + N D RRY+V+ +D + L T + Sbjct: 120 IMVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDALSETLTSDFYNHLFSYFMT 175 Query: 666 YISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYRE 723 + IP + ++ + + +ID+ + + SL SY +Y + Sbjct: 176 LDISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQ 229 Query: 724 QELNYDRKRISTRTVTLNLKQK 745 + Y S RT N+K Sbjct: 230 E---YGYMTASKRTFLANVKSL 248 >gi|284006692|emb|CBA71952.1| conserved hypothetical protein [Arsenophonus nasoniae] Length = 423 Score = 62.2 bits (149), Expect = 4e-07, Method: Composition-based stats. Identities = 50/361 (13%), Positives = 93/361 (25%), Gaps = 45/361 (12%) Query: 432 QDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF--ESEEVMDYFTRC 489 +G+ P + VEG +L+ + E Y Sbjct: 79 PNGV-GFYPEPSKCPDTVYNLYMGLSVKPVEG-DCSLYLNHIRHIICSGDEIAYQYVIAW 136 Query: 490 VGMALL-GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGK 548 + + K I ++ V G+GK T + + G V A + Sbjct: 137 MAHLIQKPDEKPSVAIAMKSVRGAGKGTFVKPLLQILGQYGVQVNGAEHLTAKFN----- 191 Query: 549 ANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFI 608 L +V E + K+ + + Sbjct: 192 -----AMLANKLLVFADEATVASAKDGEKLNGIISESTFNLERKGIDP-EPMANFSRLIF 245 Query: 609 VPNKHLFVRNPDDAWW-RRYIVIPFDKPIAN----RDASFAQKLETKYTLEAKKWFLKGV 663 N ++ RRY+V+ + +D S+ L + L + Sbjct: 246 ASNSTQALK---AGIKERRYLVLE-----PDGSRAQDKSYFDNLYQWVNDKGAAKLLYYL 297 Query: 664 KAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE----NLWEESHSLAKSYS 719 + Y G D KEE G A++ E + L +Y Sbjct: 298 QHYDISGFDRHRAPKTEALKEEILFGLTGLYAYLYAELSKDEPFDRKVRIPVTELIDNYL 357 Query: 720 EYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVD 779 + + + + + V + + G K R G+ + SVD Sbjct: 358 FWCKSNGEPETEAAARSRVGKTMIRMGL------------NKLGRRGCGIGIVYELPSVD 405 Query: 780 D 780 + Sbjct: 406 E 406 >gi|322417789|ref|YP_004197012.1| Bifunctional DNA primase/polymerase [Geobacter sp. M18] gi|320124176|gb|ADW11736.1| Bifunctional DNA primase/polymerase [Geobacter sp. M18] Length = 643 Score = 62.2 bits (149), Expect = 4e-07, Method: Composition-based stats. Identities = 27/172 (15%), Positives = 47/172 (27%), Gaps = 19/172 (11%) Query: 7 KEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKL-----PACGFGFVCGVG 61 +E A G + PLR +P + + + G G G Sbjct: 409 REFALSYAAKGLPIFPLRPNTAKPLFPKRASGDATTDPETISWCWGKTSLANIGVPTG-G 467 Query: 62 EQPLYAFDIDSKDEKTANTFKDTFEILHGT--PIVRIGQKPKILIPFRMNKEGIKKKKTT 119 + D + E HGT ++L+ F + G + Sbjct: 468 ASGVAVL---VADTQFGLPSLADLEGQHGTIQTPRAQDPSGRLLLFFDCPESG---VASC 521 Query: 120 ESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVE 171 LD LG G + V +E W + K + + ++ Sbjct: 522 ADFLPGLDFLGDGSFAVLPPSRIG-GQECRWVDQAQKGKAK----VPNWLLD 568 Score = 42.2 bits (97), Expect = 0.40, Method: Composition-based stats. Identities = 15/80 (18%), Positives = 32/80 (40%), Gaps = 16/80 (20%) Query: 693 YQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIK 752 + W+ + C +GE ++ +L + + K ++ + L++ GF Sbjct: 580 LKEWLAERCAMGEGFSAQATALLDDFCAW-------SGKTVTPQLFGRLLRESGF----- 627 Query: 753 REKIEKEWKSKRIIKGLKLK 772 E++ S GL+LK Sbjct: 628 ----ERKKSSVYWYLGLRLK 643 >gi|83310618|ref|YP_420882.1| hypothetical protein amb1519 [Magnetospirillum magneticum AMB-1] gi|82945459|dbj|BAE50323.1| hypothetical protein [Magnetospirillum magneticum AMB-1] Length = 512 Score = 62.2 bits (149), Expect = 4e-07, Method: Composition-based stats. Identities = 50/355 (14%), Positives = 102/355 (28%), Gaps = 37/355 (10%) Query: 430 GEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF--ESEEVMDYFT 487 G DG +L G ++P T D V + + + Sbjct: 122 GAPDGWYNLWRGFTIEPAPA------TEDYRHHCRQFPTLTDHVLSNVAGGDKALAKWIW 175 Query: 488 RCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEA 546 + + + +RG GSGKS L + + G Y + + ++ N Sbjct: 176 AWFAHMIQRPIERIGVALVLRGRQGSGKSALGDAVGMLLGPHYTLIDDPRHLVGNFNAHL 235 Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 D+ A +++ + + + Sbjct: 236 ASCLFLQAD---------EAVWAGDKGAAGRLRSLITSSRTLQERKNIDA-EQVRNLVRL 285 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + + V + RR+ VI +D ++ L ++ L+ + + Sbjct: 286 LMTSEEDWVVPASKE--ERRFAVID-IGTGRMQDRAYFTALFSELKNGGLPHLLRFLMDF 342 Query: 667 ISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE--------NLWEESHSLAKSY 718 + + ++ E++ DT W +C G S L SY Sbjct: 343 PLEEVSLNQLPRTEALFEQKAANFDTETEWWYNCLQQGAILSGHRKWAHEVPSAGLYASY 402 Query: 719 SEYREQELNYDRKRISTRTVTLNLKQK-----GFIGGIKREKIEKEWKSKRIIKG 768 + E+ R+ S + + L+Q GF G + +++ I G Sbjct: 403 LSFAERTK--ARRPFSNARLGIKLRQLIPLEYGFKPGKIKVEVDDVLPDGSRIPG 455 >gi|211731726|gb|ACJ10075.1| predicted P-loop ATPase [Bacteriophage APSE-5] Length = 654 Score = 61.8 bits (148), Expect = 4e-07, Method: Composition-based stats. Identities = 68/523 (13%), Positives = 137/523 (26%), Gaps = 78/523 (14%) Query: 191 IIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVV--MAVHHETRGSSKGKE 248 ++ N T ++ + L ++ W+ + +A +T + K Sbjct: 120 DDLTRLVDLQNINDQTFEDLRSALWYPKILNQAENYPSWVDMGNRLAWFKDTHFEDEAKT 179 Query: 249 IARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFS 308 + WS + D E KW R+ + ++F K A R Sbjct: 180 MWLDWSSAAAKGDIEAAEAKWAELRA--------DRTGYQAIFSLAQKAGWVNPGAERLK 231 Query: 309 DAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFD 368 A + L + W +N K + I + + + V Sbjct: 232 TAVATV--DEFDD---LTNTENSKWPTFKRN----------KTSGQIEATIDNAAKAVMC 276 Query: 369 LSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRF 428 + ++ F ++ S + F L Sbjct: 277 ADFVGVEIRFDAFRDEIMFAPVGTKEWQTFTDADYSRLRITMEKRGFRAVGRELIRDVVL 336 Query: 429 LGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEE------V 482 L + + KS E + + +E+ V Sbjct: 337 LAA----------DENPFDSAMEWLKSL-----EWDGIPRIETFYHTHLGTEDTTYTRAV 381 Query: 483 MDYFTRCV-GMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQN 541 Y + G L G KA + G GSGKS+ + ++ + + + Sbjct: 382 SRYMWTALAGRVLKPGIKADMVPILVGAQGSGKSSGV----------AALSPDPTFFTEI 431 Query: 542 RPPEAGKANPSLIR-LMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600 E L R + G + ISE + IK + ++ Sbjct: 432 SFAEKDD---DLARKMRGCLVAEISELRGLNTKELESIKAFVTRTHEKWIPKFKEFATQF 488 Query: 601 PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFL 660 P N+ F+ + RR++ + +E + W Sbjct: 489 PRRSLSIGTTNEDEFLGDKTG--NRRWLPVE----------VGKMDVEGIEKDVIQLWA- 535 Query: 661 KGVKAYISKGLDVDIPEVCLKAK-EEERQG---TDTYQAWIDD 699 + + + G+ E E+ + + W+D+ Sbjct: 536 EAREVFNKTGIQFQEAEQLANQVHEKYFIKDAWQEIIERWLDE 578 >gi|211731751|gb|ACJ10090.1| predicted P-loop ATPase [Bacteriophage APSE-4] Length = 661 Score = 61.8 bits (148), Expect = 4e-07, Method: Composition-based stats. Identities = 65/529 (12%), Positives = 145/529 (27%), Gaps = 79/529 (14%) Query: 186 KDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVV--MAVHHETRGS 243 ++ N T ++ + L ++ W+ + +A +TR Sbjct: 121 PKTADDDLTRLVDLQNINDQTFEDLRSALWYPKILNQAENYPSWVDMGNRLAWFKDTRFE 180 Query: 244 SKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLL 303 + K + WS + D E KW R+ + ++F K Sbjct: 181 DEAKTMWLDWSSAAAKGDIEAAEAKWAELRA--------DRTGYQAIFSLAQKAGWVNPG 232 Query: 304 ASRFSDAYNKA-MFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSM 362 A R A F + W +N S ++ + + ++ Sbjct: 233 AERLKTAVATVDEFDDLTDP-----PENSKWPTFKRNKT---SGQIEATIDNAVKAVMCA 284 Query: 363 KEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLL 422 ++ + + + ++ ++E ++ +L+ Sbjct: 285 DFVGVEIRFDAFRDEI------MFAPVGTGEWQTFTDADYSRLRITMEKRGFKAVGRELI 338 Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEE- 481 ++ + KS E + +F +E+ Sbjct: 339 RDVVLLAAVEN-----------PFDSAMEWLKSL-----EWDGIPRIEKFYHTHFCTEDT 382 Query: 482 -----VMDYFTRCV-GMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535 V Y + G L G KA + G G GKS+ + ++ + Sbjct: 383 TYTRAVSRYMWTALAGRVLKPGIKANMVPILVGAQGCGKSSGV----------AALSPDP 432 Query: 536 SDIMQNRPPEAGKANPSLIR-LMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594 + + E L R + G + ISE + IK + Sbjct: 433 TFFTEISFAEKDD---DLARKIRGCLVAEISELRGLNTKELESIKAFVTRTHEKWIPKFK 489 Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLE 654 ++ P N+ F+ + RR++ + + D +K Sbjct: 490 EFATQFPRRSLSIGTTNQDEFLGDKTG--NRRWLPVE----VGKMDVEGIKKDV------ 537 Query: 655 AKKWFLKGVKAYISKGLDVDIPEVCLKAK-EEERQG---TDTYQAWIDD 699 + W + + + G+ + E E+ + + W+D+ Sbjct: 538 IQLWA-EAREVFNKTGIQFEEAEQLANQVHEKYFIKDAWQEIIERWLDE 585 >gi|320013131|gb|ADW07979.1| Bifunctional DNA primase/polymerase [Streptomyces flavogriseus ATCC 33331] Length = 370 Score = 61.8 bits (148), Expect = 4e-07, Method: Composition-based stats. Identities = 32/255 (12%), Positives = 59/255 (23%), Gaps = 70/255 (27%) Query: 10 AKQAIHNGFKLIPLRLGDKRPQ-------------------RLGKW----EEQLLSSEKI 46 AK G+ + PL G K P G+W L +I Sbjct: 29 AKWCARQGWPVHPLAPGRKTPAANCETCRQPGHSRAGCVCPSEGRWCHSFHAATLDQRRI 88 Query: 47 DKL----PACGFGFVCGVGEQPLYAFDIDS--------------------------KDEK 76 D+ P G G CG L DID+ + Sbjct: 89 DRWWGQNPQFGIGVACGPA--GLVVVDIDAHATKSPGRDRILPGIPISDQVNLAGLTNGF 146 Query: 77 TANTFKDTFEILHG-----TPIVRIGQKPKILIPFRM-NKEGIKKKKT---TESTQGHLD 127 + + + + + +R+ + + + +D Sbjct: 147 HTIAVLAALRDMPSPADDASTLRVRTPSGGLHVWYRVGDSRSWQCSSGSSPGRALAWQVD 206 Query: 128 ILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKD 187 + G Y VA T V +L + + L + + Sbjct: 207 VRANGGYIVAPGTTTAA------GTYTPLGSVRRPAVLPDWLAQELERTGHLPAFDVPAP 260 Query: 188 KKSIIPSKTWTNNNN 202 + ++ Sbjct: 261 RAVPPRAQQAVIAAG 275 >gi|320009650|gb|ADW04500.1| Bifunctional DNA primase/polymerase [Streptomyces flavogriseus ATCC 33331] Length = 338 Score = 61.8 bits (148), Expect = 4e-07, Method: Composition-based stats. Identities = 20/104 (19%), Positives = 29/104 (27%), Gaps = 6/104 (5%) Query: 51 ACGFGFVCGVGEQPLYAFDID-----SKDEKTANTFKDTFEILHGTPIVRIGQKPKILIP 105 A G+G CG L D+D D A + P V + Sbjct: 122 ATGYGIACGRQPHRLIGIDLDIDTTHGNDSVAALRQLALQHLFTIPPTVTVLTPSGGRHL 181 Query: 106 FRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYT 149 + G+ + +D+ G G Y V T Y Sbjct: 182 WLTGPPGVSVPNSAGRLAPGIDVRGAGGYLVGPGSV-TTHGRYR 224 >gi|291010738|gb|ADD71726.1| DNA primase/polymerase [Leuconostoc phage 1-A4] Length = 251 Score = 61.8 bits (148), Expect = 4e-07, Method: Composition-based stats. Identities = 41/269 (15%), Positives = 81/269 (30%), Gaps = 27/269 (10%) Query: 7 KEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLY 66 KE A I G ++ L K P W+ + L+ E++D+ G+G V Sbjct: 3 KELAHYFIDQGIHVVALTPKKKYPNY-KGWQTKRLTIEQVDRALDSGYGLGI-VPHGEFI 60 Query: 67 AFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPK--ILIPFRMNKEGIKKKKTTESTQG 124 D+D+ E AN ++ + + + Sbjct: 61 VVDLDADHESGANGVENFIANFDDYATITAYKDNSTNEHRFY--------------QNTY 106 Query: 125 HLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPL 184 L+I G + + +K T P + F+ D E + + F+ + V Sbjct: 107 GLNIRKTGDNAIIDGVDIFSKDNLITTLPFYYFEDLDLTKPFLEQLAPSPERFELLKVYE 166 Query: 185 VKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSS 244 K + + +T +N Y + + + + + M Sbjct: 167 DKPVEVPKSN--FTKHNIENYLKKVPQFEVGGRSASYRKLIYTMVVRRGMVY-------E 217 Query: 245 KGKEIARRWSKQGSTYDEENFNYKWDTFD 273 ++ +W G Y EE + + Sbjct: 218 DARDAIIKWDADGINYQEEEPTQFYHSIR 246 >gi|71065038|ref|YP_263765.1| hypothetical protein Psyc_0468 [Psychrobacter arcticus 273-4] gi|71038023|gb|AAZ18331.1| hypothetical protein Psyc_0468 [Psychrobacter arcticus 273-4] Length = 566 Score = 61.8 bits (148), Expect = 4e-07, Method: Composition-based stats. Identities = 60/436 (13%), Positives = 132/436 (30%), Gaps = 40/436 (9%) Query: 313 KAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTL----DKITASIMNFLVSMKEDVFD 368 + I K + +Y + K Y K + I + L + + K+ Sbjct: 75 AQITDIGKVTNKVYDTEQKIEYTKTQFANEIGNKKLAARWWETKHRKIAKSEVAKDLDVM 134 Query: 369 LSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRF 428 ++ E + + +F ++ ++ + + +++ L + Sbjct: 135 MAVEAQSM------FQRYFLIYGTKEVWDDVERIRLPVDTIKLARPNEYEIWLKSEARIT 188 Query: 429 LGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP--------SQEFLDLVSGYF-ES 479 + + D + K K++ I G P E + DL+ S Sbjct: 189 IKADNIWFDPTRTKSPKHDKDIAINTFDGLPLKPIETELSDAAAMCKPITDLLLHLCEGS 248 Query: 480 EEVMDYFTRCVGMALL-GGNKAQRFIHIRGV-GGSGKSTLMNL-IKYAFGNQYVINAEAS 536 +EV ++ R + + L G K + G G+GKS + + +G+ V + Sbjct: 249 KEVYEWVLRWLAIPLQQPGTKLDTALIFHGEIQGAGKSLFFDRVMTRIYGDYAVTLGQGQ 308 Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNT 596 + K L L + + +KQ+ G+ + + + Sbjct: 309 LDSSYNDWVSDK----LYALFEEIF-----SGNDSHSQMGMVKQLITGNTIYISKKFMSG 359 Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAK 656 + + F+ N +D RR++V + I + T + Sbjct: 360 WQQDNFVNAVFLSNNMKPLSLEQND---RRHVVCYPQQKIPEPILNDVATALTDADAKML 416 Query: 657 KWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDT-----YQAWIDDCCDIGENLWEES 711 + F + K P + +K + + + Y W+ + DI S Sbjct: 417 RAFYTLLMLTDLKDQTAHTPAIITASKNQLIRLSQPNWEVFYDDWVKEEFDI-PYCSCLS 475 Query: 712 HSLAKSYSEYREQELN 727 L Y + + Sbjct: 476 TDLYFVYRNWCHRNGE 491 >gi|256786521|ref|ZP_05524952.1| hypothetical protein SlivT_18689 [Streptomyces lividans TK24] gi|289770413|ref|ZP_06529791.1| conserved hypothetical protein [Streptomyces lividans TK24] gi|289700612|gb|EFD68041.1| conserved hypothetical protein [Streptomyces lividans TK24] Length = 291 Score = 61.8 bits (148), Expect = 4e-07, Method: Composition-based stats. Identities = 24/167 (14%), Positives = 40/167 (23%), Gaps = 36/167 (21%) Query: 15 HNGFKLIPLRLGDKRPQRLG----------------------KWEEQLLSSEKIDKLPAC 52 G +IPL K P + +++ L A Sbjct: 21 ERGLAVIPL-ARTKLPALRSPHRDAPASEPFACRGECGRFGHGVHDASTDPDRVRALFAA 79 Query: 53 -----GFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILH-------GTPIVRIGQKP 100 G+G CG+ L D+D+K L +V + Sbjct: 80 APWATGYGIACGLPPHHLIGVDLDTKSAAAQTDSATALRELALRHLFTIPPTVVVLTPSG 139 Query: 101 KILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKE 147 + + + +DI G G Y V + Sbjct: 140 GRHLWLTGPPDHVVPNS-AGRLAPGIDIRGAGGYLVGPGSRTRHGAY 185 >gi|21222404|ref|NP_628183.1| hypothetical protein SCO4001 [Streptomyces coelicolor A3(2)] gi|13122165|emb|CAC32341.1| hypothetical protein 2SC10A7.05c [Streptomyces coelicolor A3(2)] Length = 291 Score = 61.8 bits (148), Expect = 4e-07, Method: Composition-based stats. Identities = 24/167 (14%), Positives = 40/167 (23%), Gaps = 36/167 (21%) Query: 15 HNGFKLIPLRLGDKRPQRLG----------------------KWEEQLLSSEKIDKLPAC 52 G +IPL K P + +++ L A Sbjct: 21 ERGLAVIPL-ARTKLPALRSPHRDAPASEPFACRGECGRFGHGVHDASTDPDRVRALFAA 79 Query: 53 -----GFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILH-------GTPIVRIGQKP 100 G+G CG+ L D+D+K L +V + Sbjct: 80 APWATGYGIACGLPPHHLIGVDLDTKSAAAQTDSATALRELALRHLFTIPPTVVVLTPSG 139 Query: 101 KILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKE 147 + + + +DI G G Y V + Sbjct: 140 GRHLWLTGPPDHVVPNS-AGRLAPGIDIRGAGGYLVGPGSRTRHGAY 185 >gi|297193395|ref|ZP_06910793.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC 25486] gi|297151754|gb|EFH31333.1| conserved hypothetical protein [Streptomyces pristinaespiralis ATCC 25486] Length = 315 Score = 61.8 bits (148), Expect = 4e-07, Method: Composition-based stats. Identities = 20/141 (14%), Positives = 33/141 (23%), Gaps = 8/141 (5%) Query: 51 ACGFGFVCGVGEQPLYAFDIDSKD-----EKTANTFKDTFEILHGTPIVRIGQKPKILIP 105 A G+G CG L D+D+K + + + T V + L Sbjct: 107 ATGYGIACGRPPHHLIGIDLDTKSSTDSMAELQHLALRHLFTIPETVTVLTPSGGRHLWL 166 Query: 106 FRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLL 165 + +D+ G G Y V Y P Sbjct: 167 --TGPPDTVVPNSASRLAPGIDVRGTGGYLVGPGSV-TAHGAYRIAPGTAHLAPAPCPRA 223 Query: 166 SEEDVEYLFKFFQEITVPLVK 186 + + P + Sbjct: 224 LLRLIAPPARTRSAAGSPHGQ 244 >gi|309700534|emb|CBI99829.1| putative primase [Escherichia coli ETEC H10407] Length = 782 Score = 61.8 bits (148), Expect = 5e-07, Method: Composition-based stats. Identities = 42/324 (12%), Positives = 88/324 (27%), Gaps = 30/324 (9%) Query: 447 TKELYITKSTGTPFVEGE-PSQEFLDLVSGYF--ESEEVMDYFTRCVGMALL-GGNKAQR 502 + G E +L+ + +EE Y + + + K Sbjct: 450 CPDDVFNLYEGLALEPIEGDCTVYLNHLLQVVCAGNEEAYQYLIQWMAHIIQKPDEKPSV 509 Query: 503 FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIV 562 I ++ V G+GK T + + G A I L +V Sbjct: 510 AIVMKSVPGTGKGTTVKPLLQILGQYAAHINGAGHISGRFNSI----------LANKLLV 559 Query: 563 IISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDA 622 E + A ++K + + P N ++ Sbjct: 560 FADEVTIHKPSEADRLKAIISEPTFNLERKGIDA-EPMPNFARLIFASNSTQVLQ---AG 615 Query: 623 WW-RRYIVIPFDKPIANRDASFAQKLET---KYTLEAKKWFLKGVKAYISKGLDVDIPEV 678 RRY+V+ P + + +L + W LKGV G D Sbjct: 616 IRERRYLVLE-PSPEKAQSREYFDRLYSWLNDGGAAKLLWHLKGVDL---SGFDPQRAPQ 671 Query: 679 CLKAKEEERQGTDTYQAWIDDCCDIGE----NLWEESHSLAKSYSEYREQELNYDRKRIS 734 +EE G + ++ + + + + + + ++ + Sbjct: 672 TDALREEILLGLSGVELFLYGELINEPPFNGEVRLFAKDMVSRFVAWSLERGEKLKEPAA 731 Query: 735 TRTVTLNLKQKGFIGGIKREKIEK 758 + +L Q G + + ++ Sbjct: 732 RSLLGKSLAQMGLVKHGRPDRGNG 755 >gi|300923441|ref|ZP_07139481.1| zinc-binding domain of primase-helicase [Escherichia coli MS 182-1] gi|300420268|gb|EFK03579.1| zinc-binding domain of primase-helicase [Escherichia coli MS 182-1] Length = 783 Score = 61.8 bits (148), Expect = 5e-07, Method: Composition-based stats. Identities = 42/324 (12%), Positives = 88/324 (27%), Gaps = 30/324 (9%) Query: 447 TKELYITKSTGTPFVEGE-PSQEFLDLVSGYF--ESEEVMDYFTRCVGMALL-GGNKAQR 502 + G E +L+ + +EE Y + + + K Sbjct: 451 CPDDVFNLYEGLALEPIEGDCTVYLNHLLQVVCAGNEEAYQYLIQWMAHIIQKPDEKPSV 510 Query: 503 FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIV 562 I ++ V G+GK T + + G A I L +V Sbjct: 511 AIVMKSVPGTGKGTTVKPLLQILGQYAAHINGAGHISGRFNSI----------LANKLLV 560 Query: 563 IISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDA 622 E + A ++K + + P N ++ Sbjct: 561 FADEVTIHKPSEADRLKAIISEPTFNLERKGIDA-EPMPNFARLIFASNSTQVLQ---AG 616 Query: 623 WW-RRYIVIPFDKPIANRDASFAQKLET---KYTLEAKKWFLKGVKAYISKGLDVDIPEV 678 RRY+V+ P + + +L + W LKGV G D Sbjct: 617 IRERRYLVLE-PSPEKAQSREYFDRLYSWLNDGGAAKLLWHLKGVDL---SGFDPQRAPQ 672 Query: 679 CLKAKEEERQGTDTYQAWIDDCCDIGE----NLWEESHSLAKSYSEYREQELNYDRKRIS 734 +EE G + ++ + + + + + + ++ + Sbjct: 673 TDALREEILLGLSGVELFLYGELINEPPFNGEVRLFAKDMVSRFVAWSLERGEKLKEPAA 732 Query: 735 TRTVTLNLKQKGFIGGIKREKIEK 758 + +L Q G + + ++ Sbjct: 733 RSLLGKSLAQMGLVKHGRPDRGNG 756 >gi|237703427|ref|ZP_04533908.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] gi|226902691|gb|EEH88950.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA] gi|315285444|gb|EFU44889.1| zinc-binding domain of primase-helicase [Escherichia coli MS 110-3] gi|323954803|gb|EGB50583.1| hypothetical protein ERLG_03795 [Escherichia coli H263] Length = 783 Score = 61.8 bits (148), Expect = 5e-07, Method: Composition-based stats. Identities = 42/324 (12%), Positives = 88/324 (27%), Gaps = 30/324 (9%) Query: 447 TKELYITKSTGTPFVEGE-PSQEFLDLVSGYF--ESEEVMDYFTRCVGMALL-GGNKAQR 502 + G E +L+ + +EE Y + + + K Sbjct: 451 CPDDVFNLYEGLALEPIEGDCTVYLNHLLQVVCAGNEEAYQYLIQWMAHIIQKPDEKPSV 510 Query: 503 FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIV 562 I ++ V G+GK T + + G A I L +V Sbjct: 511 AIVMKSVPGTGKGTTVKPLLQILGQYAAHINGAGHISGRFNSI----------LANKLLV 560 Query: 563 IISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDA 622 E + A ++K + + P N ++ Sbjct: 561 FADEVTIHKPSEADRLKAIISEPTFNLERKGIDA-EPMPNFARLIFASNSTQVLQ---AG 616 Query: 623 WW-RRYIVIPFDKPIANRDASFAQKLET---KYTLEAKKWFLKGVKAYISKGLDVDIPEV 678 RRY+V+ P + + +L + W LKGV G D Sbjct: 617 IRERRYLVLE-PSPEKAQSREYFDRLYSWLNDGGAAKLLWHLKGVDL---SGFDPQRAPQ 672 Query: 679 CLKAKEEERQGTDTYQAWIDDCCDIGE----NLWEESHSLAKSYSEYREQELNYDRKRIS 734 +EE G + ++ + + + + + + ++ + Sbjct: 673 TDALREEILLGLSGVELFLYGELINEPPFNGEVRLFAKDMVSRFVAWSLERGEKLKEPAA 732 Query: 735 TRTVTLNLKQKGFIGGIKREKIEK 758 + +L Q G + + ++ Sbjct: 733 RSLLGKSLAQMGLVKHGRPDRGNG 756 >gi|302552580|ref|ZP_07304922.1| conserved hypothetical protein [Streptomyces viridochromogenes DSM 40736] gi|302470198|gb|EFL33291.1| conserved hypothetical protein [Streptomyces viridochromogenes DSM 40736] Length = 202 Score = 61.8 bits (148), Expect = 5e-07, Method: Composition-based stats. Identities = 25/160 (15%), Positives = 40/160 (25%), Gaps = 31/160 (19%) Query: 15 HNGFKLIPLRLGDKRPQRLG--------------------KWEEQLLSSEKIDKLPAC-- 52 G +IPL K P + +I +L A Sbjct: 21 ERGLAVIPLSR-TKLPALRSPHRDAPVPAPCHGECGRLGHGVHDASSDPARIRELFAAAP 79 Query: 53 ---GFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEIL----HGTPIVRIGQKPKILIP 105 G+G CG+ L D+D K ++ + +V + + Sbjct: 80 WATGYGIACGLPPHHLIGLDLDVKTGTDSSAALRELALRHLFTIPPTVVIVTPSGGRHLW 139 Query: 106 FRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTK 145 E + +DI G G Y V Sbjct: 140 LSGPSEVVVPNS-AGRLAPGIDIRGAGGYLVGPGSRTGQG 178 >gi|325003514|ref|ZP_08124626.1| hypothetical protein PseP1_32321 [Pseudonocardia sp. P1] Length = 310 Score = 61.4 bits (147), Expect = 5e-07, Method: Composition-based stats. Identities = 35/231 (15%), Positives = 56/231 (24%), Gaps = 37/231 (16%) Query: 7 KEQAKQAIHNGFKLIPLRLGDKRPQRLG---------------KWEEQLLSS-EKIDKL- 49 + A A G + P R K P G WE + + ++I + Sbjct: 2 RHVALDAARAGHHVFPTRPHAKIPALHGERSCRGRGVCAESHQGWEPRATTDPDQIRRWW 61 Query: 50 --PACGFGFVCGVGEQPLYAFDIDS--------KDEKTANTFKDTFEILHGTPIVRI--- 96 G CG L D+D+ T HG I Sbjct: 62 SRTPFGVAIACGP--SRLVVIDLDTGTEPLPDWGGATTGWEVLTRAATAHGHTITDTYTV 119 Query: 97 -GQKPKILIPFRMN--KEGIKKKKTTESTQGH-LDILGCGQYFVAYNIHPKTKKEYTWTT 152 + +R E + T + G +D G Y V YT T Sbjct: 120 ATPSGGHHLYYRAPQGPELRNTQGGTGHSIGPLVDTRAGGGYIVGAGTTRPEG-TYTVTC 178 Query: 153 PPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNR 203 + + + L + E + L + + Sbjct: 179 HRPIADLPEWLTIMLTPPPPLLRDQPEQPLDLGPRQARAYLRAIVDGETDL 229 >gi|260663330|ref|ZP_05864221.1| bifunctional DNA primase/polymerase [Lactobacillus fermentum 28-3-CHN] gi|260552182|gb|EEX25234.1| bifunctional DNA primase/polymerase [Lactobacillus fermentum 28-3-CHN] Length = 263 Score = 61.4 bits (147), Expect = 5e-07, Method: Composition-based stats. Identities = 35/193 (18%), Positives = 54/193 (27%), Gaps = 32/193 (16%) Query: 9 QAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQ-LLSSEKIDKL----PACGFGFVCGVGEQ 63 A Q GF +IP K+P K+ ++ L+ +I+K P Sbjct: 7 YAIQYAKKGFSVIPTV--GKKPLV--KFADREPLTPAEIEKFWTSHPYANIALKT----D 58 Query: 64 PLYAFDID-SKDEKTANTFKDTF--EILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120 + D+D +D T R F KE + Sbjct: 59 QFFVVDVDRHEDGDDGTLSIKNLSHPEWFNTLCQRTAHDG-YQFFFTKPKE---RISQNI 114 Query: 121 STQGHLDILGC-GQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQE 179 +DI Y V K Y W + P++ E L +E Sbjct: 115 GFLPGVDIKAHPNNYVVVAPSIID-DKAYQW--------LNRKPMIQPA--EELIHLIEE 163 Query: 180 ITVPLVKDKKSII 192 P + +KK Sbjct: 164 KGKPTISNKKIEA 176 >gi|28895435|ref|NP_801785.1| hypothetical protein SPs0523 [Streptococcus pyogenes SSI-1] gi|28810681|dbj|BAC63618.1| hypothetical protein [Streptococcus pyogenes SSI-1] Length = 270 Score = 61.4 bits (147), Expect = 5e-07, Method: Composition-based stats. Identities = 35/267 (13%), Positives = 67/267 (25%), Gaps = 25/267 (9%) Query: 8 EQAKQAIHNGFKLIPLRLGDKRP----QRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQ 63 + A GF +IP+ K+P + E L P Sbjct: 6 DYAIYYQQKGFSVIPISKDGKKPLVAFADKPAFTEHELRL-IWKDNPDANIALKT----D 60 Query: 64 PLYAFDIDSKDEKTANTFKDTFE--ILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTES 121 + DID ++ +E L + I + K Sbjct: 61 TFFVIDIDVHNDVDGLKNLREWEHARLIPKTLQATTPSGGRHIYLKKPKG--VSMAQNIG 118 Query: 122 TQGHLDILGC-GQYFVAYNIHPKTKKEYTW--TTPPHRFKVEDTPLLSEEDVEYLFKFFQ 178 +D+ Y + + K Y W P ++ + PL + L ++ Sbjct: 119 FIDGVDLKAHVNNYVLVPPSN-NAKGMYEWDMVHSPTSGEMTEAPLELINVLRELKPAYE 177 Query: 179 ------EITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPV 232 +K + + + N + F+ N + + Sbjct: 178 YDASSFTSGDYQGSNKTAKLFETIVLGFGDTGGRNNALAEFVGGLL--LRNVDVEIAYTL 235 Query: 233 VMAVHHETRGSSKGKEIARRWSKQGST 259 +H+T KE R + Sbjct: 236 AKMANHKTADPLSDKEFERTFKSMCDK 262 >gi|21910495|ref|NP_664763.1| hypothetical protein SpyM3_0959 [Streptococcus pyogenes MGAS315] gi|21910877|ref|NP_665145.1| hypothetical protein SpyM3_1341 [Streptococcus pyogenes MGAS315] gi|28876243|ref|NP_795448.1| hypothetical protein SpyM3_0959 [Streptococcus pyogenes phage 315.2] gi|28876423|ref|NP_795618.1| hypothetical protein SpyM3_1341 [Streptococcus pyogenes phage 315.5] gi|21904694|gb|AAM79566.1| conserved hypothetical protein - phage-associated [Streptococcus pyogenes MGAS315] gi|21905083|gb|AAM79948.1| conserved hypothetical protein - phage-associated [Streptococcus pyogenes MGAS315] Length = 267 Score = 61.4 bits (147), Expect = 6e-07, Method: Composition-based stats. Identities = 35/267 (13%), Positives = 67/267 (25%), Gaps = 25/267 (9%) Query: 8 EQAKQAIHNGFKLIPLRLGDKRP----QRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQ 63 + A GF +IP+ K+P + E L P Sbjct: 3 DYAIYYQQKGFSVIPISKDGKKPLVAFADKPAFTEHELRL-IWKDNPDANIALKT----D 57 Query: 64 PLYAFDIDSKDEKTANTFKDTFE--ILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTES 121 + DID ++ +E L + I + K Sbjct: 58 TFFVIDIDVHNDVDGLKNLREWEHARLIPKTLQATTPSGGRHIYLKKPKG--VSMAQNIG 115 Query: 122 TQGHLDILGC-GQYFVAYNIHPKTKKEYTW--TTPPHRFKVEDTPLLSEEDVEYLFKFFQ 178 +D+ Y + + K Y W P ++ + PL + L ++ Sbjct: 116 FIDGVDLKAHVNNYVLVPPSN-NAKGMYEWDMVHSPTSGEMTEAPLELINVLRELKPAYE 174 Query: 179 ------EITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPV 232 +K + + + N + F+ N + + Sbjct: 175 YDASSFTSGDYQGSNKTAKLFETIVLGFGDTGGRNNALAEFVGGLL--LRNVDVEIAYTL 232 Query: 233 VMAVHHETRGSSKGKEIARRWSKQGST 259 +H+T KE R + Sbjct: 233 AKMANHKTADPLSDKEFERTFKSMCDK 259 >gi|290959118|ref|YP_003490300.1| hypothetical protein SCAB_47031 [Streptomyces scabiei 87.22] gi|260648644|emb|CBG71756.1| conserved hypothetical protein [Streptomyces scabiei 87.22] Length = 289 Score = 61.4 bits (147), Expect = 6e-07, Method: Composition-based stats. Identities = 29/201 (14%), Positives = 48/201 (23%), Gaps = 33/201 (16%) Query: 15 HNGFKLIPLRLGDKRPQRLG--------------------KWEEQLLSSEKIDKLP---- 50 G +IPL K P + ++ +L Sbjct: 21 ERGLAVIPLSR-SKLPALRSPHRDDPHPRPCHGECGRFGHGVHDASTDPRRVRELFSAAP 79 Query: 51 -ACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFE-----ILHGTPIVRIGQKPKILI 104 A G+G CG+ L D+D+K ++ + T +V + + Sbjct: 80 WATGYGIACGLHPHHLIGVDLDTKSGTDSSAALRELALRHLFTIPETVVVLTPSGGRHIW 139 Query: 105 PFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPL 164 + + +DI G G Y V T H P Sbjct: 140 L--TGPPDVVVPNSASRLAPGIDIRGAGGYLVGPGSRTDHGVYGTAPGTSHLSPAPCPPA 197 Query: 165 LSEEDVEYLFKFFQEITVPLV 185 L P+ Sbjct: 198 LLRLLSPPPRTNPAGPAGPVG 218 >gi|289167297|ref|YP_003445564.1| hypothetical protein smi_0424 [Streptococcus mitis B6] gi|288906862|emb|CBJ21696.1| conserved hypothetical protein [Streptococcus mitis B6] Length = 265 Score = 61.4 bits (147), Expect = 6e-07, Method: Composition-based stats. Identities = 33/282 (11%), Positives = 78/282 (27%), Gaps = 34/282 (12%) Query: 8 EQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKL----PACGFGFVCGVGEQ 63 + A G+ +IP+ KR + K++++ S +I + P + Sbjct: 6 DYALHYQKLGYSVIPIDKKSKR--AITKFKDKTFSENEIRRFWHEQPDANIAWRT----T 59 Query: 64 PLYAFDIDSK-DEKTANTFKDT-FEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTES 121 + DID E + K+ + I + K + Sbjct: 60 DFFVIDIDVSVTENGYESLKEWELSQYIPKTLTATTPSGGKHIFLKKPKGI--ELSQDIR 117 Query: 122 TQGHLDILGCG-QYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEI 180 + +DI Y + + K Y W E + + EI Sbjct: 118 VKPGIDIKANKNNYVLVAPSN-NAKGSYKWDKST----------------EQMAEAPAEI 160 Query: 181 TVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIP--VVMAVHH 238 L K+ P T+ + +++++ F G + + + + Sbjct: 161 ISILQTSKQPKEPMSFTTDYSRGEFSSKTAKLFEQVVFGLGDKGGRNNALASFIGGLLMR 220 Query: 239 ETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDT 280 + + + + +++ +E+ Sbjct: 221 GVDVDATYLLAKIANHYTPDSLPTDELDRTFESMVRKEMDRR 262 >gi|297200823|ref|ZP_06918220.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Streptomyces sviceus ATCC 29083] gi|297147743|gb|EFH28715.1| LOW QUALITY PROTEIN: conserved hypothetical protein [Streptomyces sviceus ATCC 29083] Length = 264 Score = 61.1 bits (146), Expect = 7e-07, Method: Composition-based stats. Identities = 19/104 (18%), Positives = 30/104 (28%), Gaps = 7/104 (6%) Query: 51 ACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFE-----ILHGTPIVRIGQKPKILIP 105 A G+G CG+ L D+D+K ++ + T +V + L Sbjct: 82 ATGYGIACGLPPHHLIGVDLDTKSGTDSSAALRELALRHLFTIPDTVVVLTPSGGRHLWL 141 Query: 106 FRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYT 149 + +DI G G Y V T Sbjct: 142 TGPPDAAVPNSAGR--LAPGIDIRGAGGYLVGPGSRTDHGTYTT 183 >gi|239630758|ref|ZP_04673789.1| prophage Lp3 protein 7 [Lactobacillus paracasei subsp. paracasei 8700:2] gi|239527041|gb|EEQ66042.1| prophage Lp3 protein 7 [Lactobacillus paracasei subsp. paracasei 8700:2] Length = 275 Score = 61.1 bits (146), Expect = 7e-07, Method: Composition-based stats. Identities = 26/177 (14%), Positives = 47/177 (26%), Gaps = 26/177 (14%) Query: 13 AIHNGFKLIPLRLGDKRP-QRLGKWEEQLLSSEKIDKL----PACGFGFVCGVGEQPLYA 67 + F + PL G + P +++ E+ K P G + Sbjct: 11 YQQHCFAVYPLAPGTRTPLNGSHGYKDATKDPEQAKKWWGEHPNYNIGLGL----DGVLV 66 Query: 68 FDID--SKDEKTANTFKDTFEI-----LHGTPIVRIGQKPKILIPFRMNKEGI----KKK 116 FDID K E N + + V + I F KE Sbjct: 67 FDIDMGHKSEVNGNESLAKLSVEGRAGQIPSSYVETTPNGGLHIFFTYPKELKLTSRSDL 126 Query: 117 KTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYL 173 + + LD + G + + P K+ + ++ + Sbjct: 127 FSNNGEKTGLDYIATG--VPVFPSIRENGMY----QPLKGHKITKLAPAPQWLLDEI 177 >gi|294630239|ref|ZP_06708799.1| bifunctional DNA primase/polymerase [Streptomyces sp. e14] gi|292833572|gb|EFF91921.1| bifunctional DNA primase/polymerase [Streptomyces sp. e14] Length = 291 Score = 61.1 bits (146), Expect = 7e-07, Method: Composition-based stats. Identities = 26/160 (16%), Positives = 40/160 (25%), Gaps = 29/160 (18%) Query: 15 HNGFKLIPL--------------RLGDKRPQRLG-------KWEEQLLSSEKIDKLPAC- 52 G +IPL RP G + ++ L A Sbjct: 21 ERGLAVIPLSRTKLPALRSPHRDDPDPGRPPCRGECGRFGHGVHDASADPARVRALFAAA 80 Query: 53 ----GFGFVCGVGEQPLYAFDIDSK---DEKTANTFKDTFEILHGTPIVRIGQKPKILIP 105 G+G CG+ L D+D+K D A V + Sbjct: 81 PRATGYGIACGLPPYHLIGVDLDTKAGTDAVAALRGLARRHRFTVPATVVVLTPSGGRHL 140 Query: 106 FRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTK 145 + + + +DI G G Y V + Sbjct: 141 WLSGPADVVVPNSASRLAPGIDIRGAGGYLVGPGSRTERG 180 >gi|320169592|gb|EFW46491.1| predicted protein [Capsaspora owczarzaki ATCC 30864] Length = 109 Score = 61.1 bits (146), Expect = 7e-07, Method: Composition-based stats. Identities = 29/111 (26%), Positives = 44/111 (39%), Gaps = 10/111 (9%) Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620 +V+ SE E +N +K++TG D R YG P +F PF N+ V D Sbjct: 1 MVVFSELEEGVPMNEVFVKEITGEDGTGFRELYGKE-VNRPITFVPFFSTNEIPQVT-RD 58 Query: 621 DAWWRRYIVIPFDKPIANRDAS-FAQKLETK-------YTLEAKKWFLKGV 663 A WRR + + ++ + E K Y WF++G Sbjct: 59 PALWRRLTNVQWSAMAEDQKPGVYKADPELKDLVKTKEYLESWLYWFIQGA 109 >gi|123319031|ref|XP_001293114.1| hypothetical protein [Trichomonas vaginalis G3] gi|121869555|gb|EAX80184.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 297 Score = 61.1 bits (146), Expect = 8e-07, Method: Composition-based stats. Identities = 29/184 (15%), Positives = 55/184 (29%), Gaps = 16/184 (8%) Query: 469 FLDLVSGYF--ESEEVMDYFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLM-NLIKYA 524 +LD V +E V +Y L K + + I G G+GK+T +++ Sbjct: 87 WLDHVKEIICNGNERVYEYILCWFANILQHPSAKNETALIIIGKQGTGKNTFFTDILCKL 146 Query: 525 F-GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTG 583 G +I N S+ + + + +N+ +K + Sbjct: 147 LEGYSNPNMTNLENICGKF-------NSSIENMKLIVCNELQSIDTTKVLNSDALKSLIT 199 Query: 584 GDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASF 643 Y + + + N D RRY+V+ +D + Sbjct: 200 DKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESSD---RRYVVVR-TSEAHMQDTEY 255 Query: 644 AQKL 647 L Sbjct: 256 FDDL 259 >gi|240145190|ref|ZP_04743791.1| conserved hypothetical protein [Roseburia intestinalis L1-82] gi|257202746|gb|EEV01031.1| conserved hypothetical protein [Roseburia intestinalis L1-82] Length = 190 Score = 61.1 bits (146), Expect = 8e-07, Method: Composition-based stats. Identities = 21/126 (16%), Positives = 44/126 (34%), Gaps = 4/126 (3%) Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTP 459 T ++ + ++ + Q+G L ++ G + E + Sbjct: 68 KNIPRTISNIVEIMKLAAHAESFPPKPDEIHVQNGTLRID-GSFLAGRSE-IVRSRFPID 125 Query: 460 FVEGEPSQE-FLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLM 518 + +L +S E + F +G L+ K QR + ++G GG GKS + Sbjct: 126 YNPQAGKPVVWLRFLSDLL-YPEDIPTFQEYIGYCLIPSTKGQRMMILKGEGGEGKSQIG 184 Query: 519 NLIKYA 524 ++ Sbjct: 185 PVLARL 190 >gi|85059138|ref|YP_454840.1| hypothetical protein SG1160 [Sodalis glossinidius str. 'morsitans'] gi|84779658|dbj|BAE74435.1| hypothetical protein [Sodalis glossinidius str. 'morsitans'] Length = 214 Score = 61.1 bits (146), Expect = 8e-07, Method: Composition-based stats. Identities = 30/151 (19%), Positives = 51/151 (33%), Gaps = 12/151 (7%) Query: 19 KLIPLRLGDKRP-QRLGKWEEQLLSSEKIDKL--PACGFGFVCGVGEQPLYAFDIDSKDE 75 +P K+ + +W L++ +D P G G L A D D++DE Sbjct: 55 AKVPSLYNRKKQIAGIRQWASMLITPAMLDNWEEPDYGICVRTGR---GLIALDCDNEDE 111 Query: 76 KTANTFKDTFEILHG-TPIVRIGQ-KPKILIPFRMNKEGIK---KKKTTESTQGHLDILG 130 + G P R + K L E K + + +++L Sbjct: 112 GHHAIIEQVLRDTLGCLPPCRFRKNANKCLYLLNAPFERRKGVLRLPDEDGRPAQIELLA 171 Query: 131 CGQYFVAYNIHPKTKKEYTWTTPPHRFKVED 161 GQ F+A IHP + W ++ + Sbjct: 172 TGQQFMAAGIHP-SGARIVWRFALSKYPKSN 201 >gi|123149209|ref|XP_001277675.1| hypothetical protein [Trichomonas vaginalis G3] gi|121822198|gb|EAX64745.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 281 Score = 60.7 bits (145), Expect = 9e-07, Method: Composition-based stats. Identities = 38/252 (15%), Positives = 71/252 (28%), Gaps = 24/252 (9%) Query: 406 AQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP 465 Q L+ + + +LD+ L + D T E Sbjct: 22 KQKLKKIKVVQVGMKMLDAWDILL---SKLEDFSVRGIKFYTPSPNFYSIFTGYKYEQVE 78 Query: 466 SQE-----FLDLVSGYF--ESEEVMDYFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTL 517 +E +LD V +E V +Y L K + + I G G+GK+T Sbjct: 79 WKENVIEAWLDHVKEIICNGNERVYEYILCWFANILQHPSAKNETALIIIGKQGTGKNTF 138 Query: 518 M-NLIKYAF-GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA 575 +++ G +I N S+ + + + +N+ Sbjct: 139 FTDILCKLLEGYSNPNMTNLENICGKF-------NSSIENMKLIVCNELQSIDTTKVLNS 191 Query: 576 AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP 635 +K + Y + + + N D RRY+V+ Sbjct: 192 DALKSLITDKVGVVERKYKDQRVCENVANFVMVSNNAVPMKLESSD---RRYVVVR-TSE 247 Query: 636 IANRDASFAQKL 647 +D + L Sbjct: 248 AHMQDTEYFDDL 259 >gi|9633552|ref|NP_050964.1| hypothetical protein APSE-1_03 [Acyrthosiphon pisum bacteriophage APSE-1] gi|6118000|gb|AAF03948.1|AF157835_3 P3 [Endosymbiont phage APSE-1] Length = 752 Score = 60.7 bits (145), Expect = 9e-07, Method: Composition-based stats. Identities = 67/530 (12%), Positives = 145/530 (27%), Gaps = 81/530 (15%) Query: 186 KDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVV--MAVHHETRGS 243 ++ N T ++ + L ++ W+ + +A +TR Sbjct: 212 PKTADDDLTRLVDLQNINDQTFEDLRSALWYPKILNRAENYPSWVDMGNRLAWFKDTRFE 271 Query: 244 SKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLL 303 + K + WS + D E KW R+ + ++F K Sbjct: 272 DEAKTMWLDWSSAAAKGDIEAAEAKWAELRA--------DRTGYQAIFSLAQKAGWVNPG 323 Query: 304 ASRFSDAYNKA-MFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSM 362 A R A F + W +N K + I + + Sbjct: 324 AERLKTAVATVDAFDDLTDPT-----ENSKWPTFKRN----------KTSGQIEATIDNA 368 Query: 363 KEDVFDLSEEPEDNNKNSKSPR-FWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDL 421 + V + + ++ + + ++ ++E ++ +L Sbjct: 369 AKAVMCANFVGVEIRFDTFRDEIMFAPVGTKEWQTFTDADYSRLRITMEKRGFRAVGREL 428 Query: 422 LDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEE 481 + ++ + KS E + + +E+ Sbjct: 429 IRDVVLLAAVEN-----------PFDSAMEWLKSL-----EWDGIPRIETFYHTHLGTED 472 Query: 482 ------VMDYFTRCV-GMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534 V Y + G L G KA + G GSGKS+ + ++ + Sbjct: 473 TAYTRAVSRYMWTALAGRVLKPGIKADMVPILVGAQGSGKSSGV----------AALSPD 522 Query: 535 ASDIMQNRPPEAGKANPSLIR-LMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593 + + E L R + G + ISE + IK + Sbjct: 523 PTFFTEISFAEKDD---DLARKMRGCLVAEISELRGLNTKELESIKAFVTRTHEKWIPKF 579 Query: 594 GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTL 653 ++ P N+ F+ + RR++ + + D +K Sbjct: 580 KEFATQFPRRSLSIGTTNEDEFLGDKTG--NRRWLPV----AVGKMDVEGIKKDV----- 628 Query: 654 EAKKWFLKGVKAYISKGLDVDIPEVCLKAK-EEERQG---TDTYQAWIDD 699 + W + + + G+ E E+ + + W+D+ Sbjct: 629 -IQLWA-EAREVFNETGIQFQEAEQLANQVHEKYFIKDAWQEIIERWLDE 676 >gi|331700426|ref|YP_004397385.1| bifunctional DNA primase/polymerase [Lactobacillus buchneri NRRL B-30929] gi|329127769|gb|AEB72322.1| Bifunctional DNA primase/polymerase [Lactobacillus buchneri NRRL B-30929] Length = 254 Score = 60.7 bits (145), Expect = 9e-07, Method: Composition-based stats. Identities = 21/162 (12%), Positives = 43/162 (26%), Gaps = 17/162 (10%) Query: 10 AKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPA----CGFGFVCGVGEQPL 65 A + G K+ PL+ KRP + + + ++ + G + + Sbjct: 8 AHKLAKQGLKVFPLQANSKRPVTAHGYLDATDNLIQLGEWFDNDRQYNLGLRL--ADTGI 65 Query: 66 YAFDID-SKDEKTANTFKDTFEILHGTPIVRIGQKP--KILIPFRMNKEGIKKKKTTEST 122 DID K Q P + F+ N++ K Sbjct: 66 VVVDIDHHTQIDGRKVLKQWQTKGMTLIPQYAEQTPHDGLHYFFKTNQKLPDKV-----I 120 Query: 123 QGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPL 164 +++ + + K Y + P+ Sbjct: 121 VPSIELKT--KQIMIAPSQLD-GKPYQTIKGTDLTHLSPLPV 159 >gi|211731774|gb|ACJ10104.1| predicted P-loop ATPase [Bacteriophage APSE-7] Length = 654 Score = 60.7 bits (145), Expect = 9e-07, Method: Composition-based stats. Identities = 66/524 (12%), Positives = 144/524 (27%), Gaps = 80/524 (15%) Query: 191 IIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVV--MAVHHETRGSSKGKE 248 ++ N T ++ + L ++ W+ + +A +T + K Sbjct: 120 DDLTRLVDLQNINDQTFEDLRSALWYPKILNQAENYPSWVDMGNRLAWFKDTHFEDEAKT 179 Query: 249 IARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFS 308 + WS + D E KW R+ + ++F K A R Sbjct: 180 MWLDWSSAAAKGDIEAAEAKWAELRA--------DRTGYQAIFSLAQKAGWVNPGAERLK 231 Query: 309 DAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFD 368 A + L + W +N K + I + + + V Sbjct: 232 TAVATV--DEFDD---LTNTENSKWPTFKRN----------KTSGQIEATIDNAAKAVMY 276 Query: 369 LSEEPEDNNKNSKSPR-FWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSR 427 + ++ + + ++ ++E ++ +L+ Sbjct: 277 ADFVGVEIRFDTFRDEIMFAPVGTKEWQTFTDADYSRLRITMEKRGFRAVGRELIRDVVL 336 Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEE------ 481 ++ + KS E + + +E+ Sbjct: 337 LAAVEN-----------PFDSAMEWLKSL-----EWDGIPRIETFYHTHLGTEDTTYTRA 380 Query: 482 VMDYFTRCV-GMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540 V Y + G L G KA + G GSGKS+ + ++ + + + Sbjct: 381 VSRYMWTALAGRVLKPGIKADMVPILVGAQGSGKSSGV----------AALSPDPTFFTE 430 Query: 541 NRPPEAGKANPSLIR-LMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599 E L R + G + ISE + IK + ++ Sbjct: 431 ISFAEKDD---DLARKMRGCLVAEISELRGLNTKELESIKAFVTRTHEKWIPKFKEFATQ 487 Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWF 659 P N+ F+ + RR++ + + D +K + W Sbjct: 488 FPRRSLSIGTTNEDEFLGDKTG--NRRWLPVE----VGKMDVEGIKKDV------IQLWA 535 Query: 660 LKGVKAYISKGLDVDIPEVCLKAK-EEERQG---TDTYQAWIDD 699 + + + G+ E E+ + + W+D+ Sbjct: 536 -EAREVFNETGIQFQEAEQLANQVHEKYFIKDAWQEIIERWLDE 578 >gi|123327509|ref|XP_001293697.1| hypothetical protein [Trichomonas vaginalis G3] gi|121870825|gb|EAX80767.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 273 Score = 60.7 bits (145), Expect = 9e-07, Method: Composition-based stats. Identities = 37/252 (14%), Positives = 71/252 (28%), Gaps = 24/252 (9%) Query: 406 AQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP 465 Q L+ + + +LD+ L + D T E Sbjct: 22 KQKLKKIKVVQVGMKMLDAWDILL---SKLEDFSVRGIKFYTPSPNFYSIFTGYKYEQVE 78 Query: 466 SQE-----FLDLVSGYF--ESEEVMDYFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTL 517 +E +LD V +E V +Y L K + + + G G+GK+T Sbjct: 79 WKENVIEAWLDHVKEIICNGNERVYEYILCWFANILQHPSAKNETALIVIGKQGTGKNTF 138 Query: 518 M-NLIKYAF-GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA 575 +++ G +I N S+ + + + +N+ Sbjct: 139 FTDILCKLLEGYSNPNMTNLENICGKF-------NSSIENMKLIVCNELQSIDTTKVLNS 191 Query: 576 AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP 635 +K + Y + + + N D RRY+V+ Sbjct: 192 DALKSLITDKVGVVERKYKDQRVCENVANFVMVSNNAVPMKLESSD---RRYVVVR-TSE 247 Query: 636 IANRDASFAQKL 647 +D + L Sbjct: 248 AHMQDTEYFDDL 259 >gi|332855689|ref|ZP_08435998.1| hypothetical protein HMPREF0021_03588 [Acinetobacter baumannii 6013150] gi|332870668|ref|ZP_08439386.1| hypothetical protein HMPREF0020_03038 [Acinetobacter baumannii 6013113] gi|332727315|gb|EGJ58754.1| hypothetical protein HMPREF0021_03588 [Acinetobacter baumannii 6013150] gi|332732052|gb|EGJ63324.1| hypothetical protein HMPREF0020_03038 [Acinetobacter baumannii 6013113] Length = 483 Score = 60.7 bits (145), Expect = 9e-07, Method: Composition-based stats. Identities = 55/338 (16%), Positives = 119/338 (35%), Gaps = 31/338 (9%) Query: 463 GEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMAL--LGGNKAQRFIHIRGVGGSGKS-TLM 518 E + + L++ +E + + + + L +G A + + GSGKS + Sbjct: 149 YEDCKGIMTLINDLCDGEKEAVLFLLKWLAFPLQNIGAKMATCVLMHGHIHGSGKSLMFV 208 Query: 519 NLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKI 578 +++K +G + +A Q K L G I+ +++ + I Sbjct: 209 SIMKKIYGEYHTTVGQAQLDNQYNEWIENK-------LFGVFEEIVDNKKKHNVM--GMI 259 Query: 579 KQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHL-FVRNPDDAWWRRYIVIPFDKPIA 637 K + G+ + + + + + T F+ N + D RR++V+ P Sbjct: 260 KHLITGETLYISKKFVSGWEMNNHLNTVFLSNNTQPLPIEEKD----RRFLVL---NPCK 312 Query: 638 NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKE---EE-RQGTDTY 693 + D +++ + + F + + AK + R G DT+ Sbjct: 313 DLDGPLHERVMQELKTNGVQAFYTYLMGLDLTDFHEHVKPPMTIAKRTMIDYSRAGFDTF 372 Query: 694 QAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKR 753 + + +S L K++ ++ +IS + + K+ G + K Sbjct: 373 YHEWKNGDTKFPYVSCKSEQLYKAFGQWSRTTGE---HQISMKRFIIEGKKHGIVPSDKA 429 Query: 754 EKIEKEWKSKR---IIKGLKLKPAFESVDDNSNIIDFK 788 + + + S + II G K K E + I F+ Sbjct: 430 KHWKGKRSSGQNKVIIIGEKPKDEQEQLWLGLQIEQFQ 467 >gi|306822937|ref|ZP_07456313.1| hypothetical protein HMPREF0168_0873 [Bifidobacterium dentium ATCC 27679] gi|304553569|gb|EFM41480.1| hypothetical protein HMPREF0168_0873 [Bifidobacterium dentium ATCC 27679] Length = 583 Score = 60.7 bits (145), Expect = 1e-06, Method: Composition-based stats. Identities = 49/383 (12%), Positives = 106/383 (27%), Gaps = 51/383 (13%) Query: 313 KAMFSIYKKGHFLYTADTKAWYKKD-KNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSE 371 M+ K G D K Y+++ N + T K+T+ + V K+ + + Sbjct: 91 AEMWWDVKNGWLRVGDDDKTLYRRNFDENEGVLKNTYKKVTSVEAEYEVPAKKFIKGMKR 150 Query: 372 EPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGE 431 E + + + S T Sbjct: 151 EAA--------------AVLKTLSFPRVHAGIQFGSTAFIREYTSDTES----------- 185 Query: 432 QDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVG 491 + L + + ++ +++ ++ E+ D R Sbjct: 186 --CVTQLPAEDRRNLEP-FEVHFDCEFDAKLAAEARRWIEWMTV---DEKSADNLARMFA 239 Query: 492 MALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANP 551 +L +K G G +GK T+ + + + + P + Sbjct: 240 TPVLERHK-ALTFIGYGRGRNGKGTI---VSNMMDDPTTAAFTTTFNSRIMFPTGSPSTI 295 Query: 552 SL---IRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFI 608 + L+G E +K ++ GD +TAR + + T I Sbjct: 296 QEQAPLNLVGKLWAFEPECAPIGSAQMTALKALSTGDSITARRLQQQS-VNVNNTATLVI 354 Query: 609 VPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYIS 668 N+ + + + + RR++ I F + + + KY + + ++ Sbjct: 355 FTNESVCLPDTEAG-DRRFVNIRFKDGHTDAEFAPLWAFFNKY--GVAPFMMASCLLWLE 411 Query: 669 KGLDVDIPEVCL----KAKEEER 687 + P V A E Sbjct: 412 S----EDPHVVNINDGDAMSEYE 430 >gi|157311092|ref|YP_001469087.1| gp088 [Lactococcus phage KSY1] gi|108861432|gb|ABG21631.1| gp088 [Lactococcus phage KSY1] Length = 445 Score = 60.7 bits (145), Expect = 1e-06, Method: Composition-based stats. Identities = 22/151 (14%), Positives = 45/151 (29%), Gaps = 13/151 (8%) Query: 160 EDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGE 219 P Y+ Q ++ V D I K ++ + ++ L Sbjct: 21 HKYPTKPAVGEPYITDEKQGLSPYRVSDFAKIRVKKEIKQSSENKRVGMDLIPLLEVIDP 80 Query: 220 EFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGD 279 + + +W+ V MA+ E E WS++ Y KWD+F Sbjct: 81 --NDLEYHDWVKVGMALKQE----GYQFETWDTWSQRDVRYKSSEMQDKWDSFQTG---- 130 Query: 280 TAKKRSTFTSLFYHHGKLIPKGLLASRFSDA 310 + + ++ + + A + Sbjct: 131 ---QGLSGATIIMMAKERGWEPPKAKGSNKD 158 >gi|123220789|ref|XP_001285421.1| hypothetical protein [Trichomonas vaginalis G3] gi|121848929|gb|EAX72491.1| hypothetical protein TVAG_548660 [Trichomonas vaginalis G3] Length = 236 Score = 60.7 bits (145), Expect = 1e-06, Method: Composition-based stats. Identities = 29/184 (15%), Positives = 56/184 (30%), Gaps = 16/184 (8%) Query: 469 FLDLVSGYF--ESEEVMDYFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLM-NLIKYA 524 +LD V +E+V +Y L K + + I G G+GK+T +++ Sbjct: 53 WLDHVKEIICNGNEKVYEYILCWFANILQHPSAKNETALIIIGKQGTGKNTFFTDILCKL 112 Query: 525 F-GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTG 583 G +I N S+ + + + +N+ +K + Sbjct: 113 LEGYSNPNMTNLENICGKF-------NSSIENMKLIVCNELQSIDTTKVLNSDALKSLIT 165 Query: 584 GDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASF 643 Y + + + N D RRY+V+ +D + Sbjct: 166 DKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEY 221 Query: 644 AQKL 647 L Sbjct: 222 FDDL 225 >gi|212499708|ref|YP_002308516.1| predicted P-loop ATPase [Bacteriophage APSE-2] gi|238898740|ref|YP_002924422.1| APSE-2 prophage; predicted P-loop ATPase [Bacteriophage APSE-2] gi|211731677|gb|ACJ10165.1| predicted P-loop ATPase [Bacteriophage APSE-2] gi|229466500|gb|ACQ68274.1| APSE-2 prophage; predicted P-loop ATPase [Bacteriophage APSE-2] Length = 745 Score = 60.7 bits (145), Expect = 1e-06, Method: Composition-based stats. Identities = 66/524 (12%), Positives = 144/524 (27%), Gaps = 80/524 (15%) Query: 191 IIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVV--MAVHHETRGSSKGKE 248 ++ N T ++ + L ++ W+ + +A +T + K Sbjct: 211 DDLTRLVDLQNINDQTFEDLRSALWYPKILNQAENYPSWVDMGNRLAWFKDTHFEDEAKT 270 Query: 249 IARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFS 308 + WS + D E KW R+ + ++F K A R Sbjct: 271 MWLDWSSAAAKGDIEAAEAKWAELRA--------DRTGYQAIFSLAQKAGWVNPGAERLK 322 Query: 309 DAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFD 368 A + L + W +N K + I + + + V Sbjct: 323 TAVATV--DEFDD---LTNTENSKWPTFKRN----------KTSGQIEATIDNAAKAVMY 367 Query: 369 LSEEPEDNNKNSKSPR-FWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSR 427 + ++ + + ++ ++E ++ +L+ Sbjct: 368 ADFVGVEIRFDTFRDEIMFAPVGTKEWQTFTDADYSRLRITMEKRGFRAVGRELIRDVVL 427 Query: 428 FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEE------ 481 ++ + KS E + + +E+ Sbjct: 428 LAAVEN-----------PFDSAMEWLKSL-----EWDGIPRIETFYHTHLGTEDTTYTRA 471 Query: 482 VMDYFTRCV-GMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540 V Y + G L G KA + G GSGKS+ + ++ + + + Sbjct: 472 VSRYMWTALAGRVLKPGIKADMVPILVGAQGSGKSSGV----------AALSPDPTFFTE 521 Query: 541 NRPPEAGKANPSLIR-LMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599 E L R + G + ISE + IK + ++ Sbjct: 522 ISFAEKDD---DLARKMRGCLVAEISELRGLNTKELESIKAFVTRTHEKWIPKFKEFATQ 578 Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWF 659 P N+ F+ + RR++ + + D +K + W Sbjct: 579 FPRRSLSIGTTNEDEFLGDKTG--NRRWLPVE----VGKMDVEGIKKDV------IQLWA 626 Query: 660 LKGVKAYISKGLDVDIPEVCLKAK-EEERQG---TDTYQAWIDD 699 + + + G+ E E+ + + W+D+ Sbjct: 627 -EAREVFNETGIQFQEAEQLANQVHEKYFIKDAWQEIIERWLDE 669 >gi|123170979|ref|XP_001279611.1| Poxvirus D5 protein [Trichomonas vaginalis G3] gi|121829616|gb|EAX66681.1| Poxvirus D5 protein [Trichomonas vaginalis G3] Length = 293 Score = 60.7 bits (145), Expect = 1e-06, Method: Composition-based stats. Identities = 39/262 (14%), Positives = 74/262 (28%), Gaps = 32/262 (12%) Query: 469 FLDLVSGYF--ESEEVMDYFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLM-NLIKYA 524 +LD V +E V +Y L K + + I G G+GK+T +++ Sbjct: 53 WLDHVKEIICNGNERVYEYILCWFANILQHPSAKNETALIIIGKQGTGKNTFFTDILCKL 112 Query: 525 F-GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTG 583 G +I N S+ + + + +N+ +K + Sbjct: 113 LEGYSNPNMTNLENICGKF-------NSSIENMKLIVCNELQSIDTTKVLNSDALKSLIT 165 Query: 584 GDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASF 643 Y + + + N D RRY+V+ +D + Sbjct: 166 DKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEY 221 Query: 644 AQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WID--- 698 L T + + IP + ++ + + +ID Sbjct: 222 FDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIP--HTEERQTLLEANKSVYELFIDETN 279 Query: 699 -DCCDIGENLWEESHSLAKSYS 719 +C D SL Y Sbjct: 280 FECLDE--------RSLYDEYK 293 >gi|94994241|ref|YP_602339.1| phage protein [Streptococcus phage 10750.2] gi|94547749|gb|ABF37795.1| phage protein [Streptococcus phage 10750.2] Length = 270 Score = 60.7 bits (145), Expect = 1e-06, Method: Composition-based stats. Identities = 34/267 (12%), Positives = 67/267 (25%), Gaps = 25/267 (9%) Query: 8 EQAKQAIHNGFKLIPLRLGDKRP----QRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQ 63 + A GF +IP+ K+P + E L P Sbjct: 6 DYAIYYQQKGFSIIPISKDGKKPLVAFADKPAFTEHELRL-IWKDNPDANIALKT----D 60 Query: 64 PLYAFDIDSKDEKTANTFKDTFE--ILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTES 121 + DID ++ +E L + I + + Sbjct: 61 TFFVIDIDVHNDVDGLKNLREWEHARLIPKTLQATTPSGGRHIYLKKPQG--VSMAQNIG 118 Query: 122 TQGHLDILGC-GQYFVAYNIHPKTKKEYTW--TTPPHRFKVEDTPLLSEEDVEYLFKFFQ 178 +D+ Y + + K Y W P ++ + PL + L ++ Sbjct: 119 FIDGVDLKAHVNNYVLVPPSN-NAKGMYEWDMVHSPTSGEMTEAPLELINVLRELRPAYE 177 Query: 179 ------EITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPV 232 +K + + + N + F+ N + + Sbjct: 178 YDASSFTSGDYQGSNKTAKLFETIVLGFGDTGGRNNALAEFVGGLL--LRNVDVEIAYTL 235 Query: 233 VMAVHHETRGSSKGKEIARRWSKQGST 259 +H+T KE R + Sbjct: 236 AKMANHKTADPLSDKEFERTFKSMCDK 262 >gi|123419637|ref|XP_001305603.1| hypothetical protein [Trichomonas vaginalis G3] gi|121887131|gb|EAX92673.1| hypothetical protein TVAG_317310 [Trichomonas vaginalis G3] Length = 338 Score = 60.7 bits (145), Expect = 1e-06, Method: Composition-based stats. Identities = 29/184 (15%), Positives = 56/184 (30%), Gaps = 16/184 (8%) Query: 469 FLDLVSGYF--ESEEVMDYFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLM-NLIKYA 524 +LD V +E+V +Y L K + + I G G+GK+T +++ Sbjct: 87 WLDHVKEIICNGNEKVYEYILCWFANILQHPSAKNETALIIIGKQGTGKNTFFTDILCKL 146 Query: 525 F-GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTG 583 G +I N S+ + + + +N+ +K + Sbjct: 147 LEGYSNPNMTNLENICGKF-------NSSIENMKLIVCNELQSIDTTKVLNSDALKSLIT 199 Query: 584 GDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASF 643 Y + + + N D RRY+V+ +D + Sbjct: 200 DKVGVVERKYKDQRVCENVANFIMVSNNTVPMKLESSD---RRYVVVR-TSDSHMQDTEY 255 Query: 644 AQKL 647 L Sbjct: 256 FDDL 259 >gi|123155672|ref|XP_001278283.1| hypothetical protein [Trichomonas vaginalis G3] gi|121824682|gb|EAX65353.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 325 Score = 60.7 bits (145), Expect = 1e-06, Method: Composition-based stats. Identities = 29/184 (15%), Positives = 55/184 (29%), Gaps = 16/184 (8%) Query: 469 FLDLVSGYF--ESEEVMDYFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLM-NLIKYA 524 +LD V +E V +Y L K + + I G G+GK+T +++ Sbjct: 116 WLDHVKEIICNGNERVYEYILCWFANILQHPSAKNETALIIIGKQGTGKNTFFTDILCKL 175 Query: 525 F-GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTG 583 G +I N S+ + + + +N+ +K + Sbjct: 176 LEGYSNPNMTNLENICGKF-------NSSIENMKLIVCNELQSIDTTKVLNSDALKSLIT 228 Query: 584 GDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASF 643 Y + + + N D RRY+V+ +D + Sbjct: 229 DKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEY 284 Query: 644 AQKL 647 L Sbjct: 285 FDDL 288 >gi|257483927|ref|ZP_05637968.1| hypothetical protein PsyrptA_11777 [Pseudomonas syringae pv. tabaci ATCC 11528] gi|331013142|gb|EGH93198.1| hypothetical protein PSYTB_26441 [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 380 Score = 60.3 bits (144), Expect = 1e-06, Method: Composition-based stats. Identities = 29/210 (13%), Positives = 65/210 (30%), Gaps = 18/210 (8%) Query: 463 GEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLG-GNKAQRFIHIRGVGGSGKSTLMNL- 520 E + F+ + +F + DYF + M++ K +R G GK Sbjct: 72 KEQVEPFISFLRRWFPDDSERDYFGWWIAMSVRHQEQKIIATPLLRSEHGVGKGFFAETL 131 Query: 521 IKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQ 580 + G+ D++ + + G ++++ E + + +K Sbjct: 132 LPGLLGSTAAALCHLKDVVGDFNET----------VEGKTLLVVDEVYRSKKSTTDSLKS 181 Query: 581 MTGGDCMTARLNYGNTYSESPASFTPFIVPN-KHLFVRNPDDAWWRRYIVIPFDKPIANR 639 + +T R + I N V D RR+ + F + Sbjct: 182 IQANATLTLRRKHL-PVVVIDNYINFCITSNDHIPLVIESGD---RRFWIPAFIRH-KES 236 Query: 640 DASFAQKLETKYTLEAKKWFLKGVKAYISK 669 + + L ++ + V+ Y+ + Sbjct: 237 KSETDRFLNDQFKPWLLNGGFQLVRDYLEQ 266 >gi|320013061|gb|ADW07910.1| Bifunctional DNA primase/polymerase [Streptomyces flavogriseus ATCC 33331] Length = 346 Score = 60.3 bits (144), Expect = 1e-06, Method: Composition-based stats. Identities = 34/236 (14%), Positives = 55/236 (23%), Gaps = 71/236 (30%) Query: 1 MPVMQWKEQAKQAIHNGFKLIPLRLGDKRPQRL-----------------------GKWE 37 MP + + A+ + + PL G K P + Sbjct: 1 MPQPRPADVARWLAGRHWPVHPLAPGRKTPAANCEQCRVRSHEPSSCPCQARGLWCHGFH 60 Query: 38 EQLLSSEKIDKL----PACGFGFVCGVGEQPLYAFDID-----SKD-------------- 74 +++ P G G CG L D+D D Sbjct: 61 SATTDLARVEDWWSREPRAGVGVSCGPAH--LVVLDVDAHAAPVPDRNRLLPGIPIPEQV 118 Query: 75 ------------EKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTES- 121 A K+ T + + I + + ++ + +T S Sbjct: 119 DLAGLASGFDTLALLAAYRKEANPAEDETTLRVRTPSGGLHIWYVNTEPAVRYRSSTGSS 178 Query: 122 ----TQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYL 173 +D+ G Y VA YT V D L L Sbjct: 179 PRTALAWQVDVRAHGGYIVAPTTRTSAG-AYTPLGA-----VRDPAPLPAWLAAEL 228 >gi|309801266|ref|ZP_07695395.1| hypothetical protein HMPREF9003_0419 [Bifidobacterium dentium JCVIHMP022] gi|308222155|gb|EFO78438.1| hypothetical protein HMPREF9003_0419 [Bifidobacterium dentium JCVIHMP022] Length = 526 Score = 60.3 bits (144), Expect = 1e-06, Method: Composition-based stats. Identities = 49/383 (12%), Positives = 106/383 (27%), Gaps = 51/383 (13%) Query: 313 KAMFSIYKKGHFLYTADTKAWYKKD-KNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSE 371 M+ K G D K Y+++ N + T K+T+ + V K+ + + Sbjct: 34 AEMWWDVKNGWLRVGDDDKTLYRRNFDENEGVLKNTYKKVTSVEAEYEVPAKKFIKGMKR 93 Query: 372 EPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGE 431 E + + + S T Sbjct: 94 EAA--------------AVLKTLSFPRVHAGIQFGSTAFIREYTSDTES----------- 128 Query: 432 QDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVG 491 + L + + ++ +++ ++ E+ D R Sbjct: 129 --CVTQLPAEDRRNLEP-FEVHFDCEFDAKLAAEARRWIEWMTV---DEKSADNLARMFA 182 Query: 492 MALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANP 551 +L +K G G +GK T+ + + + + P + Sbjct: 183 TPVLERHK-ALTFIGYGRGRNGKGTI---VSNMMDDPTTAAFTTTFNSRIMFPTGSPSTI 238 Query: 552 SL---IRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFI 608 + L+G E +K ++ GD +TAR + + T I Sbjct: 239 QEQAPLNLVGKLWAFEPECAPIGSAQMTALKALSTGDSITARRLQQQS-VNVNNTATLVI 297 Query: 609 VPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYIS 668 N+ + + + + RR++ I F + + + KY + + ++ Sbjct: 298 FTNESVCLPDTEAG-DRRFVNIRFKDGHTDAEFAPLWAFFNKY--GVAPFMMASCLLWLE 354 Query: 669 KGLDVDIPEVCL----KAKEEER 687 + P V A E Sbjct: 355 S----EDPHVVNINDGDAMSEYE 373 >gi|239908829|ref|YP_002955571.1| hypothetical protein DMR_41940 [Desulfovibrio magneticus RS-1] gi|239798696|dbj|BAH77685.1| hypothetical protein [Desulfovibrio magneticus RS-1] Length = 873 Score = 60.3 bits (144), Expect = 1e-06, Method: Composition-based stats. Identities = 33/260 (12%), Positives = 78/260 (30%), Gaps = 19/260 (7%) Query: 7 KEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDK--LPACGFGFVCGVGEQP 64 E+ + I + ++L K P W + + + C G V G Sbjct: 17 AERIEWLIRMAQRFNFIQLKGKVPIES-GWAKYSYEKRQFNHTDFLNCNAGIVTG-PSSG 74 Query: 65 LYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTES--- 121 + DID++ + + FE+ + + + + Sbjct: 75 VIVLDIDNQVLFSRFVASNNFEVRD---TFTVKTAKGEHRYYLYPENKEVNSFPVKHPLF 131 Query: 122 -TQGHLDILGCGQYFVAY-NIHPKTKKEYTWTTPPHRFKVEDTPLLSE---EDVEYLFKF 176 D+ G G VA +IHP+T + Y + D L+ + + + ++ Sbjct: 132 KKVSIFDVRGVGGQVVAPFSIHPETNEIYRIINDVEVAEAPDWLLMDKSNYDLSDLMYVS 191 Query: 177 FQEITVPLVKDKKSIIPSKTW----TNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPV 232 + +K + + + N + + I + +N +I + Sbjct: 192 PGDCYNVEYLNKLIQMVGEEYHGYIVNGADLGSRSEIIAKVIMKLISAGFNDDEVTYILL 251 Query: 233 VMAVHHETRGSSKGKEIARR 252 + + + G+ + Sbjct: 252 NFKIGDKAKEKGSGQLEWIQ 271 >gi|330832274|ref|YP_004401099.1| replication protein [Streptococcus suis ST3] gi|329306497|gb|AEB80913.1| replication protein [Streptococcus suis ST3] Length = 275 Score = 60.3 bits (144), Expect = 1e-06, Method: Composition-based stats. Identities = 25/190 (13%), Positives = 56/190 (29%), Gaps = 20/190 (10%) Query: 7 KEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLL-SSEKID----KLPACGFGFVCGVG 61 K+ A GF +IP+ +K+P K+ ++ ++++I+ + P Sbjct: 4 KKAALAYQKKGFSVIPISPSNKQPMI--KFADKPAMTAQEIEDFWSQYPDSNIAVRT--- 58 Query: 62 EQPLYAFDID-SKDEKTANTFKDT--FEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKT 118 + DID + + ++ T + K + F+ + Sbjct: 59 -DKFFVIDIDLHGKHNGYESLANWEHLNLITPTLQAKTASGGKHIFYFKHPDVSM---TQ 114 Query: 119 TESTQGHLDILGC-GQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFF 177 +D+ Y + EY W + S V + + + Sbjct: 115 MIGFLPGVDVKAHPNNYVLVAPSKTPKG-EYAW-DLEKSKEGGTMVTASRALVMAIKQEY 172 Query: 178 QEITVPLVKD 187 + D Sbjct: 173 LKKNNRSELD 182 >gi|300939256|ref|ZP_07153935.1| zinc-binding domain of primase-helicase [Escherichia coli MS 21-1] gi|300455855|gb|EFK19348.1| zinc-binding domain of primase-helicase [Escherichia coli MS 21-1] Length = 783 Score = 60.3 bits (144), Expect = 1e-06, Method: Composition-based stats. Identities = 42/324 (12%), Positives = 88/324 (27%), Gaps = 30/324 (9%) Query: 447 TKELYITKSTGTPFVEGE-PSQEFLDLVSGYF--ESEEVMDYFTRCVGMALL-GGNKAQR 502 + G E +L+ + +EE Y + + + K Sbjct: 451 CPDDVFNLYEGLALEPIEGDCTVYLNHLLQAVCAGNEEAYQYLIQWMAHIIQKPDEKPSV 510 Query: 503 FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIV 562 I ++ V G+GK T + + G A I L +V Sbjct: 511 AIVMKSVPGTGKGTTVKPLLQILGQYAAHINGAGHISGRFNSI----------LANKLLV 560 Query: 563 IISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDA 622 E + A ++K + + P N ++ Sbjct: 561 FADEVTIHKPSEADRLKAIISEPTFNLERKGIDA-EPMPNFARLIFASNSTQVLQ---AG 616 Query: 623 WW-RRYIVIPFDKPIANRDASFAQKLET---KYTLEAKKWFLKGVKAYISKGLDVDIPEV 678 RRY+V+ P + + +L + W LKGV G D Sbjct: 617 IRERRYLVLE-PSPEKAQSREYFDRLYSWLNDGGAAKLLWHLKGVDL---SGFDPQRAPQ 672 Query: 679 CLKAKEEERQGTDTYQAWIDDCCDIGE----NLWEESHSLAKSYSEYREQELNYDRKRIS 734 +EE G + ++ + + + + + + ++ + Sbjct: 673 TDALREEILLGLSGVELFLYGELINEPPFNGEVRLFAKDMVSRFVAWSLERGEKLKEPAA 732 Query: 735 TRTVTLNLKQKGFIGGIKREKIEK 758 + +L Q G + + ++ Sbjct: 733 RSLLGKSLAQMGLVKHGRPDRGNG 756 >gi|123179369|ref|XP_001280243.1| hypothetical protein [Trichomonas vaginalis G3] gi|121831887|gb|EAX67313.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 281 Score = 60.3 bits (144), Expect = 1e-06, Method: Composition-based stats. Identities = 29/184 (15%), Positives = 55/184 (29%), Gaps = 16/184 (8%) Query: 469 FLDLVSGYF--ESEEVMDYFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLM-NLIKYA 524 +LD V +E V +Y L K + + I G G+GK+T +++ Sbjct: 87 WLDHVKEIICNGNERVYEYILCWFANILQHPSAKNETALIIIGKQGTGKNTFFTDILCKL 146 Query: 525 F-GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTG 583 G +I N S+ + + + +N+ +K + Sbjct: 147 LEGYSNPNMTNLENICGKF-------NSSIENMKLIVCNELQSIDTTKVLNSDALKSLIT 199 Query: 584 GDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASF 643 Y + + + N D RRY+V+ +D + Sbjct: 200 DKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEY 255 Query: 644 AQKL 647 L Sbjct: 256 FDDL 259 >gi|123270414|ref|XP_001289723.1| hypothetical protein [Trichomonas vaginalis G3] gi|121861162|gb|EAX76793.1| hypothetical protein TVAG_598800 [Trichomonas vaginalis G3] Length = 262 Score = 60.3 bits (144), Expect = 1e-06, Method: Composition-based stats. Identities = 29/184 (15%), Positives = 56/184 (30%), Gaps = 16/184 (8%) Query: 469 FLDLVSGYF--ESEEVMDYFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLM-NLIKYA 524 +LD V +E+V +Y L K + + I G G+GK+T +++ Sbjct: 87 WLDHVKEIICNGNEKVYEYILCWFANILQHPSAKNETALIIIGKQGTGKNTFFTDILCKL 146 Query: 525 F-GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTG 583 G +I N S+ + + + +N+ +K + Sbjct: 147 LEGYSNPNMTNLENICGKF-------NSSIENMKLIVCNELQSIDTTKVLNSDALKSLIT 199 Query: 584 GDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASF 643 Y + + + N D RRY+V+ +D + Sbjct: 200 DKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEY 255 Query: 644 AQKL 647 L Sbjct: 256 FDDL 259 >gi|329938729|ref|ZP_08288125.1| hypothetical protein SGM_3617 [Streptomyces griseoaurantiacus M045] gi|329302220|gb|EGG46112.1| hypothetical protein SGM_3617 [Streptomyces griseoaurantiacus M045] Length = 341 Score = 60.3 bits (144), Expect = 1e-06, Method: Composition-based stats. Identities = 22/132 (16%), Positives = 36/132 (27%), Gaps = 8/132 (6%) Query: 37 EEQLLSSEKIDKLPAC-----GFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTF---EIL 88 + +I +L A G+G CG+ L D+D+K + T + Sbjct: 88 HDASTDPRRIRELFAAAPWATGYGIACGLPPHHLIGVDLDTKSGTDSTTALRELALRHLF 147 Query: 89 HGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEY 148 P V + + + + +DI G G Y V Sbjct: 148 TIPPTVVVVTPSGGRHLWLTGPPDVVVPNSASRLAPGIDIRGAGGYLVGPGSRTDHGVYE 207 Query: 149 TWTTPPHRFKVE 160 T H Sbjct: 208 TAPGAAHLSPAP 219 >gi|123155124|ref|XP_001278165.1| Poxvirus D5 protein [Trichomonas vaginalis G3] gi|123184211|ref|XP_001281053.1| Poxvirus D5 protein [Trichomonas vaginalis G3] gi|123317186|ref|XP_001292577.1| Poxvirus D5 protein [Trichomonas vaginalis G3] gi|121824252|gb|EAX65235.1| Poxvirus D5 protein [Trichomonas vaginalis G3] gi|121834803|gb|EAX68123.1| Poxvirus D5 protein [Trichomonas vaginalis G3] gi|121868268|gb|EAX79647.1| Poxvirus D5 protein [Trichomonas vaginalis G3] Length = 291 Score = 59.9 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 29/184 (15%), Positives = 55/184 (29%), Gaps = 16/184 (8%) Query: 469 FLDLVSGYF--ESEEVMDYFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLM-NLIKYA 524 +LD V +E V +Y L K + + I G G+GK+T +++ Sbjct: 53 WLDHVKEIICNGNERVYEYILCWFANILQHPSAKNETALIIIGKQGTGKNTFFTDILCKL 112 Query: 525 F-GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTG 583 G +I N S+ + + + +N+ +K + Sbjct: 113 LEGYSNPNMTNLENICGKF-------NSSIENMKLIVCNELQSIDTTKVLNSDALKSLIT 165 Query: 584 GDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASF 643 Y + + + N D RRY+V+ +D + Sbjct: 166 DKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEY 221 Query: 644 AQKL 647 L Sbjct: 222 FDDL 225 >gi|123179997|ref|XP_001280298.1| hypothetical protein [Trichomonas vaginalis G3] gi|121832088|gb|EAX67368.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 281 Score = 59.9 bits (143), Expect = 1e-06, Method: Composition-based stats. Identities = 29/184 (15%), Positives = 55/184 (29%), Gaps = 16/184 (8%) Query: 469 FLDLVSGYF--ESEEVMDYFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLM-NLIKYA 524 +LD V +E V +Y L K + + I G G+GK+T +++ Sbjct: 87 WLDHVKEIICNGNERVYEYILCWFANILQHPSAKNETALIIIGKQGTGKNTFFTDILCKL 146 Query: 525 F-GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTG 583 G +I N S+ + + + +N+ +K + Sbjct: 147 LEGYSNPNMTNLENICGKF-------NSSIENMKLIVCNELQSIDTTKVLNSDALKSLIT 199 Query: 584 GDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASF 643 Y + + + N D RRY+V+ +D + Sbjct: 200 DKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEY 255 Query: 644 AQKL 647 L Sbjct: 256 FDDL 259 >gi|302559769|ref|ZP_07312111.1| N- superfamily bifunctional DNA primase/polymerase [Streptomyces griseoflavus Tu4000] gi|302477387|gb|EFL40480.1| N- superfamily bifunctional DNA primase/polymerase [Streptomyces griseoflavus Tu4000] Length = 317 Score = 59.9 bits (143), Expect = 2e-06, Method: Composition-based stats. Identities = 25/164 (15%), Positives = 39/164 (23%), Gaps = 33/164 (20%) Query: 15 HNGFKLIPLRLGDKRPQRLG----------------------KWEEQLLSSEKIDKLPAC 52 G +IPL K P + +I L A Sbjct: 48 ERGLAVIPLSR-TKLPALRSPHHDDPEPAGPPCHGECGRFGHGVHDASTDPARIRALFAA 106 Query: 53 -----GFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEIL----HGTPIVRIGQKPKIL 103 G+G CG+ L D+D+K A + +V + Sbjct: 107 APRATGYGIACGLPPHHLIGVDLDTKTGTDARAALRELALRHLFTIPATVVVLTPSGGRH 166 Query: 104 IPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKE 147 + + + +DI G G Y V Sbjct: 167 LWLTGPPDVVVPNS-AGRLAPGIDIRGAGGYLVGPGSRTDHGAY 209 >gi|123137303|ref|XP_001277241.1| hypothetical protein [Trichomonas vaginalis G3] gi|121820489|gb|EAX64311.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 302 Score = 59.9 bits (143), Expect = 2e-06, Method: Composition-based stats. Identities = 27/167 (16%), Positives = 51/167 (30%), Gaps = 15/167 (8%) Query: 469 FLDLVSGYF--ESEEVMDYFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLM-NLIKYA 524 +LD V +E V +Y L K + + I G G+GK+T +++ Sbjct: 87 WLDHVKEIICNGNERVYEYILCWFANILQHPSAKNETALIIIGKQGTGKNTFFTDILCKL 146 Query: 525 F-GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTG 583 G +I N S+ + + + +N+ +K + Sbjct: 147 LEGYSNPNMTNLENICGKF-------NSSIENMKLIVCNELQSIDTTKVLNSDALKSLIT 199 Query: 584 GDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVI 630 Y + + + N D RRY+V+ Sbjct: 200 DKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESSD---RRYVVV 243 >gi|239930266|ref|ZP_04687219.1| hypothetical protein SghaA1_18699 [Streptomyces ghanaensis ATCC 14672] gi|291438614|ref|ZP_06578004.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] gi|291341509|gb|EFE68465.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] Length = 288 Score = 59.9 bits (143), Expect = 2e-06, Method: Composition-based stats. Identities = 26/164 (15%), Positives = 41/164 (25%), Gaps = 31/164 (18%) Query: 15 HNGFKLIPLRLGDKRPQRLG--------------------KWEEQLLSSEKIDKLPAC-- 52 G +IPL K P + +I +L A Sbjct: 21 ERGLAVIPLSR-TKLPALRSPHRDDPDPAPCHGECGRSGHGVHDASTDPVRIRELFAAAP 79 Query: 53 ---GFGFVCGVGEQPLYAFDIDSK---DEKTANTFKDTFEILH-GTPIVRIGQKPKILIP 105 G+G CG+ L D+D+K D A +V + + Sbjct: 80 RATGYGIACGLPPHHLIGIDLDTKGGTDPSAALRELTLRHSFTIPATVVVLTPSGGRHLW 139 Query: 106 FRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYT 149 + + +D+ G G Y V T Sbjct: 140 LSGPPDVVVPNS-AGRLAPGIDVRGAGGYLVGPGSRTDHGTYTT 182 >gi|298369852|ref|ZP_06981168.1| conserved hypothetical protein [Neisseria sp. oral taxon 014 str. F0314] gi|298281312|gb|EFI22801.1| conserved hypothetical protein [Neisseria sp. oral taxon 014 str. F0314] Length = 812 Score = 59.9 bits (143), Expect = 2e-06, Method: Composition-based stats. Identities = 42/334 (12%), Positives = 94/334 (28%), Gaps = 39/334 (11%) Query: 454 KSTGTPFVEGEPSQEFLDLVSGYF---ESEEVMDYFTRCVGMALLGGNKAQR------FI 504 KS G + + L+ + V L + + Sbjct: 444 KSIGYLIEAFPECRNIIRLIYHLCSGNGDDGTNARAAEWVLNWLACRVRQPAEKPATALV 503 Query: 505 HIRGVGGSGKSTLMNLI-KYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVI 563 I G GKST I K FG + A ++ + L + Sbjct: 504 FISETQGVGKSTFGEKIVKALFGEY----------TRQLDQNALESRFNSALLFALVTIF 553 Query: 564 ISETNENDEINA-AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKH-LFVRNPDD 621 + ++ +N K+K M D + + + ++ + + + D Sbjct: 554 EEISPSDERLNVIGKLKNMITSDVIMVERKGRDAEKHGDFNSFIIFSNDERSIPIESND- 612 Query: 622 AWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGV-KAYISKGLDVDIPEVCL 680 RR++V+ +K ++ Q+ + FL + Y G + Sbjct: 613 ---RRFMVVNCNKKFSDAQYEALQEELDNGGIRHFAEFLHALPLTYQEDGEERKFSPHTK 669 Query: 681 KAKEEERQGTDTY-----QAWIDDCCDIG---ENLWEESHSLAKSYSEYREQELNYDRKR 732 ++ + +A++DD + + + L Y + + Sbjct: 670 PLMTPIKKRMISLNKPSWEAFLDDWREGDLDVPYVTCAATDLWAVYKRWAHNTKTFH--- 726 Query: 733 ISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRII 766 + + N+ ++ + + WK R Sbjct: 727 LQQKNFYANIGKR-LEEKRSDVALREGWKKVRFF 759 >gi|118462462|ref|YP_879573.1| hypothetical protein MAV_0284 [Mycobacterium avium 104] gi|118163749|gb|ABK64646.1| hypothetical protein MAV_0284 [Mycobacterium avium 104] Length = 932 Score = 59.9 bits (143), Expect = 2e-06, Method: Composition-based stats. Identities = 46/267 (17%), Positives = 73/267 (27%), Gaps = 31/267 (11%) Query: 11 KQAIHNGFKLIPLRLGDKRPQRLGKWEEQL--LSSEKIDKLPAC-GFGFVCGVGEQPLYA 67 ++ + G L+PL+ G K+ L W+ E + L A G G L A Sbjct: 10 ERIVALGGHLMPLKPGIKK-ALLANWQLAPAITVDEALAHLAAGGNVGVHLGF--SGLIA 66 Query: 68 FDIDSKDEKTANTFKDTFEILHGTPI-VRIGQKPKI---LIPFRMNK--EGIKKKKTTES 121 D ++ L P RI PK + R+ K + + + Sbjct: 67 LDAENLPA--TQHLLGAGFQLTVAPAKSRIEGNPKHQGSHVWLRVPKGIDPMALSSGERT 124 Query: 122 ------TQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDT--PLLSEEDVEYL 173 G +D+L G+Y VA W + D PL E E Sbjct: 125 MQVRLPGGGLIDVLAGGRYAVAPPSQLAEAPG--WAYSAYAGSPLDLAVPLEDVEVAEAP 182 Query: 174 FKFFQEITV-PLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPV 232 F P + + E+ A E +WI Sbjct: 183 KWLFDPTLPCPEPLTALRGCLAPKA------RRDLAELDARSVALTTEIDQVPWGDWIAG 236 Query: 233 VMAVHHETRGSSKGKEIARRWSKQGST 259 + + G E+ + Sbjct: 237 DRRLSPTGQVDGCGCEVWHWTDAEHDK 263 >gi|123194009|ref|XP_001282960.1| hypothetical protein [Trichomonas vaginalis G3] gi|121841371|gb|EAX70030.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 354 Score = 59.5 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 29/184 (15%), Positives = 55/184 (29%), Gaps = 16/184 (8%) Query: 469 FLDLVSGYF--ESEEVMDYFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLM-NLIKYA 524 +LD V +E V +Y L K + + I G G+GK+T +++ Sbjct: 116 WLDHVKEIICNGNERVYEYILCWFANILQHPSAKNETALIIIGKQGTGKNTFFTDILCKL 175 Query: 525 F-GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTG 583 G +I N S+ + + + +N+ +K + Sbjct: 176 LEGYSNPNMTNLENICGKF-------NSSIENMKLIVCNELQSIDTTKVLNSDALKSLIT 228 Query: 584 GDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASF 643 Y + + + N D RRY+V+ +D + Sbjct: 229 DKVGVVERKYKDQRVCENVANFVMVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEY 284 Query: 644 AQKL 647 L Sbjct: 285 FDDL 288 >gi|318042163|ref|ZP_07974119.1| hypothetical protein SCB01_10655 [Synechococcus sp. CB0101] Length = 271 Score = 59.5 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 29/189 (15%), Positives = 50/189 (26%), Gaps = 27/189 (14%) Query: 25 LGDKRPQRLGKWEEQL-LSSEKIDKLPA-CGFGFVCGVGEQPLYAFDIDSKDEKTANTFK 82 K P L W+ L + ++ + G G+ PL FD D + Sbjct: 7 PDRKGPM-LEGWQHHLGYTVAQLQAYRSMRSVGARTGLLTGPLLCFDFDG----ATSLEL 61 Query: 83 DTFEILHGTPIV-----RIGQKPKILIPFR--------------MNKEGIKKKKTTESTQ 123 ++ R ++ + FR + I KT S Sbjct: 62 GLDHLIDPGWACTWQVHRDTDANRLKVLFRPTMEQLQQLPDGAEFQGKTITAPKTDTSKG 121 Query: 124 GHLDILGCG-QYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITV 182 L++ G + + HP + Y W + P E + Q+ Sbjct: 122 EALEVFFDGGRQVIVLGEHPSSGGHYFWPDGMGPEALAAPPAHWWEHALRIAADCQQRLT 181 Query: 183 PLVKDKKSI 191 K Sbjct: 182 TGSKPSSRR 190 >gi|153853410|ref|ZP_01994819.1| hypothetical protein DORLON_00808 [Dorea longicatena DSM 13814] gi|149754196|gb|EDM64127.1| hypothetical protein DORLON_00808 [Dorea longicatena DSM 13814] Length = 750 Score = 59.5 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 24/165 (14%), Positives = 47/165 (28%), Gaps = 22/165 (13%) Query: 222 YNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTA 281 + +W+ V MA+ HE ++ WSK Y KW+TF ++ Sbjct: 17 AELDYQDWVNVGMALKHE----GYSVDVWDTWSKNDRRYHSGECEKKWNTF---HGSNSP 69 Query: 282 KKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNV 341 T L +G + D + D ++W + + + Sbjct: 70 VTAGTIVQLAMENGWKPSYTAYELGWDDEISAE----------CLVVD-RSWVEGKEIHE 118 Query: 342 YIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFW 386 I +L ++ + ++ K W Sbjct: 119 PRN----WDPVNEITRYLETLFDPGENVGYVTGSWEKTDDKGTRW 159 >gi|110645270|ref|YP_667909.1| helicase [Neodiprion abietis NPV] gi|85717846|gb|ABC74935.1| helicase [Neodiprion abietis NPV] Length = 1136 Score = 59.5 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 39/270 (14%), Positives = 87/270 (32%), Gaps = 29/270 (10%) Query: 373 PEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQ 432 N + +F NT + +Q + K + I ++ + + Sbjct: 731 LTQNRIDPSRKKFKSNTIHPKQEFLKIKKFLGIYNVWKDKLILPAHNET--TLKWLIRFY 788 Query: 433 DGILDLETGQKVKPTKE-LYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVG 491 + + T + +T ++ + + +F G Sbjct: 789 MRCVFTRIPGFMDHTTNPHMLHVATAYCYMLIANNFAYDH------------VWFLMMFG 836 Query: 492 MAL-LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKAN 550 +L + N + + + G +GK++ + ++ + A++ + NR + Sbjct: 837 ASLNIPQNYEKLIVTLTGSSNAGKTSFVQVLGKI-----AVKMPANNFIDNRGNGPTEME 891 Query: 551 PSLIRLMGSRIVIISETNENDEINAAKIKQMTG-GDCMTARLNYGNTYSESPASFTPFIV 609 S I + E NE + A IK + + R + + + + P I Sbjct: 892 FSRA------ICQLYEINEVHKTTAENIKNIADLSKEVVVRHAHS-SCQKITLQYKPLIC 944 Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDKPIANR 639 N+ L + N D A R I+I +D + Sbjct: 945 NNRMLEIENFDKAVENRLIIIYYDHVFVKK 974 >gi|317501013|ref|ZP_07959221.1| hypothetical protein HMPREF1026_01164 [Lachnospiraceae bacterium 8_1_57FAA] gi|316897591|gb|EFV19654.1| hypothetical protein HMPREF1026_01164 [Lachnospiraceae bacterium 8_1_57FAA] Length = 132 Score = 59.5 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 11/102 (10%), Positives = 29/102 (28%), Gaps = 7/102 (6%) Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSS-RFLGEQDGILDLETGQKVKPTKELYITKSTGT 458 K L + L+ R++ ++G D G+ ++ + Sbjct: 17 GVIKRIYNLLITQPKVHREAYELNKQPVRWINFKNGYYDPVMGEMLEHNPDYLTINQIPF 76 Query: 459 PFVEGEPS------QEFLDLVSGYFESEEVMDYFTRCVGMAL 494 P+ + + ++ ++E F G + Sbjct: 77 PYYPEDCEQVLQGGENIKKYLASSLSNKEEQQTFWEYFGYCM 118 >gi|295837848|ref|ZP_06824781.1| N- superfamily bifunctional DNA primase/polymerase [Streptomyces sp. SPB74] gi|197699918|gb|EDY46851.1| N- superfamily bifunctional DNA primase/polymerase [Streptomyces sp. SPB74] Length = 344 Score = 59.5 bits (142), Expect = 2e-06, Method: Composition-based stats. Identities = 18/98 (18%), Positives = 29/98 (29%), Gaps = 3/98 (3%) Query: 51 ACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHG---TPIVRIGQKPKILIPFR 107 A G+G CG+ L D+D+K HG +R+ + Sbjct: 108 ASGYGIACGLAPHHLLGLDLDTKHGADPLRALVLLGARHGFVLPVTLRVATPSGGAHLWF 167 Query: 108 MNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTK 145 G + + +D+ G G Y V Sbjct: 168 SAPAGRTVRNSAGRLAPGIDVRGAGGYLVGPGSRTTRG 205 >gi|322510469|gb|ADX05784.1| putative DNA primase/polymerase [Organic Lake virophage] Length = 776 Score = 59.1 bits (141), Expect = 3e-06, Method: Composition-based stats. Identities = 53/313 (16%), Positives = 95/313 (30%), Gaps = 63/313 (20%) Query: 469 FLDLVSGYFESEEVMD-YFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFG 526 +LDLV EE YF R + K + +G G+GK+ +++ I Sbjct: 434 YLDLVKELCGGEEDHAMYFHRFIAQIFQDPNRKVPICVIFKGKQGTGKNMMLDAIGNMLN 493 Query: 527 N-QYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEIN-AAKIKQMTGG 584 Y+ +++ +D + K +V ++E + + KIK Sbjct: 494 KTHYITSSKPTDFFGDHAEGFCK----------KLLVNLNECEGKNTFDFEGKIKSFITE 543 Query: 585 DCMTARLNYGNTYSESPASFTPFIVP--NKHLF-VRNPDDAWWRRYIV-------IPFDK 634 D +T YS + + T N V+ D RRY+V I Sbjct: 544 DTITVNPKNVRPYSIANMARTVITTQKPNPIPIDVKTKD----RRYVVYKTTDKYIKMSS 599 Query: 635 PIANRDASFAQKLETKYTLEAK-KWFLKGVK---AYISKGLDVDIPEVCLKAKEEERQGT 690 L ++A +WF+ +I + E ++ Sbjct: 600 KFW---TQLHNHLRKPEMMQALYQWFMTFNLTDFDWIKR----------RPLTEAYKEMC 646 Query: 691 DTY----QAWIDDCCD------------IGENLWEESHSLAKSYSEYREQE--LNYDRKR 732 + Y + ++ D E + L + Y + + L D K Sbjct: 647 NLYSPIEALFFEEFYDNEIWLGLGVSGRKDEVVTIPMQELFEEYEGFCRRHRFLKDDTKA 706 Query: 733 ISTRTVTLNLKQK 745 S+R L Sbjct: 707 TSSRAFISKLVDL 719 >gi|255325158|ref|ZP_05366264.1| DNA primase/polymerase domain protein [Corynebacterium tuberculostearicum SK141] gi|255297723|gb|EET77034.1| DNA primase/polymerase domain protein [Corynebacterium tuberculostearicum SK141] Length = 750 Score = 59.1 bits (141), Expect = 3e-06, Method: Composition-based stats. Identities = 30/230 (13%), Positives = 60/230 (26%), Gaps = 23/230 (10%) Query: 8 EQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYA 67 + G ++PLR G+K P D + + G +G + Sbjct: 42 DYVHALQAEGVAVLPLRAGEKLPATPNGVHGATTDPATFDAMYSTGCNLGMNLGASGIVV 101 Query: 68 FDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQ---- 123 D D+ E + + + P + + Sbjct: 102 VDADTPAEVEDWQ--EWQKEHATSMPRATVATPGTAGVHHGGGHWWIDAENAGELKESKA 159 Query: 124 GHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVP 183 G ++ +Y V +T P V + S + + + + P Sbjct: 160 GAATVMTGDRYVVLPGSV-RTD----VADPNQPAYVVQGAVYSSVQGSAVIEAARRVDKP 214 Query: 184 LVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVV 233 + K + P+ T + ++ E L D+WI Sbjct: 215 --ETKTTREPNSTPVTSIDQWAQETEWEQLLIP----------DDWINTG 252 >gi|134296769|ref|YP_001120504.1| hypothetical protein Bcep1808_2677 [Burkholderia vietnamiensis G4] gi|134139926|gb|ABO55669.1| hypothetical protein Bcep1808_2677 [Burkholderia vietnamiensis G4] Length = 566 Score = 59.1 bits (141), Expect = 3e-06, Method: Composition-based stats. Identities = 51/441 (11%), Positives = 120/441 (27%), Gaps = 62/441 (14%) Query: 352 TASIMNFLVSMKEDVFDLSE--EPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSL 409 V K D L + E + +N S + S+ + Sbjct: 76 EDGEKQKRVIKKYDYSSLKDFKEMKIDNNYSTKEVNRNTQKQEFKKKNYADFWLSSISPV 135 Query: 410 EAGSIFSITSDLLD-SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE 468 + + + ++ +G ++ + G Sbjct: 136 KKKYERLVFDANPNFNNPDLFNMWNGFVEPKKGSVEP----------------------- 172 Query: 469 FLDLVSGYFESEEVMDYFTRCVGMALL-GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 FLD + ++E ++ + + + I + G+ GSGK+T+ +K + Sbjct: 173 FLDHLHKLIGNKEYENHIIKTIAWVVRFPHKNPGVTIVLMGLQGSGKTTISMTLKAICPD 232 Query: 528 QYVINAEAS-DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDC 586 + ++ + D++ + L + + D+ A+K+K + + Sbjct: 233 HSKVVSDLARDLLGEFNGD---------YLHVKFFLHEESSFAGDKKTASKLKDIITSEY 283 Query: 587 MTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQK 646 RL + N F F +++ D RR+ + + F + Sbjct: 284 RNNRLKFLNGIEIKNIGFHIFTSNSENPINVENSD---RRHNIFKCSSQLIGNRKHFDEY 340 Query: 647 LETKYTLEAKKWFLKGVKAYIS----KGLDVDIPEVCLKAKEEERQGTDT-YQAWIDDCC 701 + + + + + + + K+ + D +++ C Sbjct: 341 YSWLNGDGK-HYLVDYFQNIVDLSGFDVRKIIDTDAHSEVKQNNFEPLDKFLYDYLNGEC 399 Query: 702 D---------------IGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746 + I + + + Y E+ S T L K Sbjct: 400 EFYDVEEGDELSSQKWIHDEIEVSRQDFYQKYVEFCRLHAPKALLDSSQTKFTTAL-AKI 458 Query: 747 FIGGIKREKIEKEWKSKRIIK 767 F K + K K Sbjct: 459 FHFPEKYKDNWKRRNRPPFFK 479 >gi|123341474|ref|XP_001294617.1| hypothetical protein [Trichomonas vaginalis G3] gi|121872749|gb|EAX81687.1| hypothetical protein TVAG_101730 [Trichomonas vaginalis G3] Length = 210 Score = 59.1 bits (141), Expect = 3e-06, Method: Composition-based stats. Identities = 27/166 (16%), Positives = 51/166 (30%), Gaps = 15/166 (9%) Query: 470 LDLVSGYF--ESEEVMDYFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLM-NLIKYAF 525 LD V +E+V +Y L K + + I G G+GK+T +++ Sbjct: 1 LDHVKEIICNGNEKVYEYILCWFANILQHPSAKNETALIIIGKQGTGKNTFFTDILCKLL 60 Query: 526 -GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGG 584 G +I N S+ + + + +N+ +K + Sbjct: 61 EGYSNPNMTNLENICGKF-------NSSIENMKLIVCNELQSIDTTKVLNSDALKSLITD 113 Query: 585 DCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVI 630 Y + + + N D RRY+V+ Sbjct: 114 KVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESSD---RRYVVV 156 >gi|134103453|ref|YP_001109114.1| hypothetical protein SACE_7028 [Saccharopolyspora erythraea prophage pSE211] gi|291006005|ref|ZP_06563978.1| hypothetical protein SeryN2_15905 [Saccharopolyspora erythraea NRRL 2338] gi|133916076|emb|CAM06189.1| hypothetical protein SACE_7028 [Saccharopolyspora erythraea NRRL 2338] Length = 337 Score = 58.7 bits (140), Expect = 3e-06, Method: Composition-based stats. Identities = 27/175 (15%), Positives = 38/175 (21%), Gaps = 47/175 (26%) Query: 10 AKQAIHNGFKLIPLRLGDKRPQRL----------------------GKWEEQLLSSEKID 47 A I +G + PLR KRP + + Sbjct: 8 AHWLIEHGMYVFPLRPYSKRPFGNCRRCKDNRCTQPCPCLTADRPCHGYLAATNQHRRAR 67 Query: 48 KL----PACGFGFVCGVGEQPLYAFDID----------------SKDEKTANTFKDTFE- 86 + PA G D+D D A T E Sbjct: 68 RWFTRMPAANVGIST--DLSDTVVLDLDRKPKAPAAAAHDVPILVADGLGALDAITTHEG 125 Query: 87 -ILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNI 140 T + + + + FR +DI G Y VA Sbjct: 126 ADWPDTLTIATPSEGR-HLYFRRPAGLEVASDANGRVGHQIDIRAQGGYVVAPGC 179 >gi|123381289|ref|XP_001298554.1| hypothetical protein [Trichomonas vaginalis G3] gi|121879154|gb|EAX85624.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 211 Score = 58.7 bits (140), Expect = 3e-06, Method: Composition-based stats. Identities = 32/201 (15%), Positives = 62/201 (30%), Gaps = 15/201 (7%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T E Sbjct: 69 MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTPEFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724 + IP + ++ + + +ID+ + + + SL SY +Y ++ Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFVSLDERSLYDSYKQYCQE 178 Query: 725 ELNYDRKRISTRTVTLNLKQK 745 Y S RT N+K Sbjct: 179 ---YGYMAASKRTFLANVKSL 196 >gi|78485013|ref|YP_390938.1| hypothetical protein Tcr_0668 [Thiomicrospira crunogena XCL-2] gi|78363299|gb|ABB41264.1| Primase [Thiomicrospira crunogena XCL-2] Length = 833 Score = 58.7 bits (140), Expect = 3e-06, Method: Composition-based stats. Identities = 39/298 (13%), Positives = 93/298 (31%), Gaps = 29/298 (9%) Query: 480 EEVMDYFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538 ++V + + + G K + G G+GK+ FG + + + + Sbjct: 507 DDVFKWVLSWLAYPIQNPGAKLDTALIFHGPQGTGKNLFFEAYGEIFGEHFSVITQDTME 566 Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598 Q + L I++ N K+K M GD + Y Sbjct: 567 DQFNSDWVDRKLFVLAD------EIVAVQERTHVKN--KLKTMITGDRIRINQKMIAAYP 618 Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKW 658 E F+ + V D RRY+VI + + + ++ K +A Sbjct: 619 EKNFFNMVFLSNEANPVVLEKRD---RRYLVIWTPEAMPEGFYNLVRQEIDKGASKALH- 674 Query: 659 FLKGVKAYISKGLDVDIPEVCLKAKEEE---RQGTDTYQAWIDDCCDIGENLW---EESH 712 + + +AK++ T ++ + ++ + Sbjct: 675 --NYLLNFDIGEFKPWSKPPMTRAKQDLILLNAETPYV--FLHEWMTGNLDMPFCPAPAG 730 Query: 713 SLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE----KIEKEWKSKRII 766 + K Y ++ ++ + ++R +++ +G + K +++ K + Sbjct: 731 LVYKVYHKWCQENGE--KWPRTSRQFLSSIRSEGIRSEKENHFSDYKNKQDNKRTQFY 786 >gi|212712327|ref|ZP_03320455.1| hypothetical protein PROVALCAL_03415 [Providencia alcalifaciens DSM 30120] gi|212685073|gb|EEB44601.1| hypothetical protein PROVALCAL_03415 [Providencia alcalifaciens DSM 30120] Length = 752 Score = 58.7 bits (140), Expect = 3e-06, Method: Composition-based stats. Identities = 90/613 (14%), Positives = 175/613 (28%), Gaps = 81/613 (13%) Query: 169 DVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDE 228 L + S+ +N +T +I + L ++ Sbjct: 198 LASELVLHSNAADISDFDVVSDDDLSRLVDLDNINSHTFDDIRSALWHPQVLRLAENYPT 257 Query: 229 WIPVV--MAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRST 286 W+ + +A T K K + WS + DEE KW R+ Sbjct: 258 WVDMGNRLAWFKNTDYEDKAKSLWVEWSAKAEKGDEEAAINKWSQLCA--------DRTG 309 Query: 287 FTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSL 346 + ++F K R A A + + ++ Sbjct: 310 YQAIFTLAQKEGWVNPGTERLKTAVATA--DDF--DDIRVANEPMPLPSFKRDKYGQIEA 365 Query: 347 TLDKITASIMNF-LVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQN--VEENSKAK 403 T+D + ++M + ++ +E + + + + DY R +E+ Sbjct: 366 TIDNVAKAVMRPDFIDIEIRFDTFRDEIMFAPTGTNEWQQFSDADYSRLRIAMEKRDFKP 425 Query: 404 STAQSLEAGSIFSITSDLLDSS-SRFLGEQ-DGILDLETGQKVKPTKELYITKSTGTPFV 461 + + + + + DS+ + DGI +E E TP+ Sbjct: 426 VGRELIRDVVLLAAEENQFDSAIEWLTNLEWDGIKRVEQFYHTHFGAED-------TPYT 478 Query: 462 EGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLI 521 + G ++ G KA + G G GKS+ + Sbjct: 479 RAVSLYMWT-----------------AMAGRVMVPGIKADMVPILVGAQGCGKSSGV--- 518 Query: 522 KYAFGNQYVINAEASDIMQNRPPEAGKANPSLIR-LMGSRIVIISETNENDEINAAKIKQ 580 ++ + + + E L R + G + I E + IK Sbjct: 519 -------AALSPDPTFFTEISFAEKDD---DLARKMRGRLVAEIGELRGLSTKDLESIKA 568 Query: 581 MTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD 640 + ++ P N+ F+ + RR++ + K + Sbjct: 569 FVTRTHENWIPKFKEFATQFPRRSLIIGTTNEDEFLADRTG--NRRWLPVEVIKVNVDDI 626 Query: 641 ASFAQKLETKYTLEAKKWFLKGVKAYISKGL--DVDIPEVCLKAKEEERQGTDTYQAWID 698 +L + K G++ ++ L V A E + W+D Sbjct: 627 TRDVLQLWAEAREMFKA---DGIQYEAAEHLAAQVHEKYTIKDAWLE------IIERWLD 677 Query: 699 D-CCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRT---VTLNLKQKGFIGGIKRE 754 + GE S +E + LN D K IS R + L+ G+ K Sbjct: 678 EPDLMTGEKPRTRS---FLRAAEVLREALNLDPKNISRREQMRIGNVLQNCGY----KSV 730 Query: 755 KIEKEWKSKRIIK 767 + E K R+ + Sbjct: 731 QRRVEGKVTRVYE 743 >gi|123447869|ref|XP_001312670.1| hypothetical protein [Trichomonas vaginalis G3] gi|121894525|gb|EAX99740.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 211 Score = 58.7 bits (140), Expect = 4e-06, Method: Composition-based stats. Identities = 30/201 (14%), Positives = 61/201 (30%), Gaps = 15/201 (7%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T Sbjct: 69 MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTPNFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724 + IP + ++ + + +I++ + + + SL SY +Y ++ Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIEE----SDFVSLDERSLYDSYKQYCQE 178 Query: 725 ELNYDRKRISTRTVTLNLKQK 745 Y S RT N+K Sbjct: 179 ---YGYMTASKRTFLANVKNL 196 >gi|78212470|ref|YP_381249.1| hypothetical protein Syncc9605_0932 [Synechococcus sp. CC9605] gi|78196929|gb|ABB34694.1| conserved hypothetical protein [Synechococcus sp. CC9605] Length = 226 Score = 58.7 bits (140), Expect = 4e-06, Method: Composition-based stats. Identities = 25/185 (13%), Positives = 48/185 (25%), Gaps = 33/185 (17%) Query: 26 GDKRPQRLGKWEEQL--LSSEKIDKLPAC-GFGFVCGVGEQPLYAFDIDSKDEKTANTFK 82 D + + W + E +++ P G + QPL FD D + Sbjct: 33 KDGKAPYISGWSKHPEFTVQELLEQFPQTKSVGVIT----QPLLCFDFDGETATQHAVLN 88 Query: 83 DTFEILHGTPIV-RIGQKPKILIPFRMNKE------------GIKKKKTTESTQGHLD-- 127 D T + R + + F +K+ K + + + + Sbjct: 89 DRDPDYVNTWRINRTTDPNRYKLLFLPSKKQLAQLPNGQITHSFKTRPPSSVRRPPYEKG 148 Query: 128 -----------ILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKF 176 G+ + HP + Y W + P V L + Sbjct: 149 AVVAKGEAEEVFCHPGRQVIVAGEHPSSGGHYFWPVGFGPEALCAPPEEWWSHVLELSRD 208 Query: 177 FQEIT 181 + Sbjct: 209 YPRPA 213 >gi|123182765|ref|XP_001280745.1| hypothetical protein [Trichomonas vaginalis G3] gi|121833665|gb|EAX67815.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 211 Score = 58.4 bits (139), Expect = 4e-06, Method: Composition-based stats. Identities = 31/201 (15%), Positives = 60/201 (29%), Gaps = 15/201 (7%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T Sbjct: 69 MVSNNAVPMKLESSD---RRYVVVR-TSEAHMQDTEYFDDLAETLTPNFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724 + IP + ++ + + +ID+ + + SL SY +Y ++ Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE 178 Query: 725 ELNYDRKRISTRTVTLNLKQK 745 Y S RT N+K Sbjct: 179 ---YGYMAASKRTFLANVKNL 196 >gi|9964401|ref|NP_064869.1| putative NTPase [Amsacta moorei entomopoxvirus 'L'] gi|9944610|gb|AAG02793.1|AF250284_87 AMV087 [Amsacta moorei entomopoxvirus 'L'] Length = 726 Score = 58.4 bits (139), Expect = 4e-06, Method: Composition-based stats. Identities = 44/380 (11%), Positives = 96/380 (25%), Gaps = 47/380 (12%) Query: 268 KWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYT 327 K + + K + + + G L + + + + + + Sbjct: 304 KICGKNSLHKNNRIIKFTEQKIILFKSGNPRNCNTLKYDYPTLSGYELANFIRDLNIIKK 363 Query: 328 ADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWF 387 D+ A+ I + + + + +F Sbjct: 364 IDSDAYVYWKNGKWAIVDNPY---------IFQGISNMILEKYRNNMLIQDIDYIIKKFF 414 Query: 388 NTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPT 447 R + S+ +D++ + + +G+ DL+ + Sbjct: 415 GEAKNRISAN-----------------LSMNTDIICFNPYIIQFNNGVYDLKESKFYTGE 457 Query: 448 --KELYITKSTGTPFVEGEPS------------QEFLDLVSGYFESEEVMDYFTRCVGMA 493 K+ + + E L L + + Sbjct: 458 NAKKYIRLNYIKIDYKDIEDMSDEEKIKFENNYNILLKLFNLVIPKSNPKRIVFETNLSS 517 Query: 494 LLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL 553 +L + G GKST+ L++ + ++ N L Sbjct: 518 VLHYCHKSVITILYGPTSGGKSTIKYLLRQLLFDMFLEPPIEFY---QNYIPKNSPNSWL 574 Query: 554 IRLMGSRIVIIS--ETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPN 611 ++ + S + N N+ IKQ T + R + + T FI N Sbjct: 575 GKVEDKLVSFASEGDVNRNEVFLNKNIKQYTEQ-YILGRDLNKSKCVH-KNTLTQFIDLN 632 Query: 612 KHLFVRNPDDAWWRRYIVIP 631 + D A +R VI Sbjct: 633 PKPMFSSVDPALVKRIAVIE 652 >gi|291621990|emb|CAX65023.1| gp42 protein [Vibrio phage VP58.5] Length = 1117 Score = 58.4 bits (139), Expect = 5e-06, Method: Composition-based stats. Identities = 19/97 (19%), Positives = 31/97 (31%), Gaps = 9/97 (9%) Query: 212 AFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDT 271 C + +D W V A+H E G + WS GS Y E+ +W + Sbjct: 32 EVQECLSFISPDQDYDTWARVGRALHSEFGKD--GFTLFDNWSSGGSNYKEKAVREQWKS 89 Query: 272 FDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFS 308 F R T ++ Y + + + Sbjct: 90 F-------RTTDRVTIGTVIYLAKEGGWSPVRDASQD 119 >gi|16579845|gb|AAL26660.1| unknown [Staphylococcus aureus] Length = 172 Score = 58.4 bits (139), Expect = 5e-06, Method: Composition-based stats. Identities = 17/112 (15%), Positives = 36/112 (32%), Gaps = 3/112 (2%) Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD-DAWWRRYIVIPFDKPI 636 +K++ + + G T E+ N L + A RR VIP + + Sbjct: 19 LKKLVSVEPVHVDRK-GKTQVETTLDLKLAFGTNARLNFPSAHAKALERRIAVIPCEYYV 77 Query: 637 ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQ 688 D +KL+ E + + K + ++ + + + Sbjct: 78 EKADPDLIEKLQ-DEKKEIFLYLMYVYKQIVKNDIEYLQNDRVTEISHDWLN 128 >gi|163851880|ref|YP_001639923.1| hypothetical protein Mext_2457 [Methylobacterium extorquens PA1] gi|163663485|gb|ABY30852.1| hypothetical protein Mext_2457 [Methylobacterium extorquens PA1] Length = 820 Score = 58.4 bits (139), Expect = 5e-06, Method: Composition-based stats. Identities = 29/212 (13%), Positives = 66/212 (31%), Gaps = 24/212 (11%) Query: 458 TPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALL-GGNKAQRFIHIRGVGGSGKST 516 P + ++ L F ++ + L G K + + G G+GK+T Sbjct: 452 IPAESTDGAEPILRHFDYLFPKAAEREHILDYLAHMLRHPGVKIAHGLMVTGPQGTGKTT 511 Query: 517 LMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA- 575 + +++ G++ + A+ RL+ + ++I E Sbjct: 512 IGIIVRGLIGDRNA----------RKVEGDELADKWTSRLVNVQALVIEEAAHGQRYEIY 561 Query: 576 AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK-HLFVRNPDDAWWRRYIVIPFDK 634 + K++ G+ T + Y+ + ++ + V D RR+ V + Sbjct: 562 ERFKELFTGETFTVQDKQVPLYNGRCPRGVLLLTNHEAAITVTGND----RRFHVSETTE 617 Query: 635 PIANRDASFAQKLETK-----YTLEAKKWFLK 661 A + L W ++ Sbjct: 618 VPA--PPEYFAALYAALDDGVTLPAFAAWLMQ 647 >gi|123231964|ref|XP_001286348.1| hypothetical protein [Trichomonas vaginalis G3] gi|121851706|gb|EAX73418.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 211 Score = 58.4 bits (139), Expect = 5e-06, Method: Composition-based stats. Identities = 31/203 (15%), Positives = 59/203 (29%), Gaps = 19/203 (9%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T Sbjct: 69 MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTPNFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHS--LAKSYSEYR 722 + IP + ++ + + +ID+ N +E L Y +Y Sbjct: 125 DISNFNPRQIPHT--EERQTLLEANKSVYELFIDE------NDFECLDERSLYDEYKQYC 176 Query: 723 EQELNYDRKRISTRTVTLNLKQK 745 ++ Y S RT N+K Sbjct: 177 QE---YGYMAASKRTFLANVKNL 196 >gi|211731819|gb|ACJ10131.1| predicted P-loop ATPase [Bacteriophage APSE-6] Length = 661 Score = 58.4 bits (139), Expect = 5e-06, Method: Composition-based stats. Identities = 71/535 (13%), Positives = 138/535 (25%), Gaps = 91/535 (17%) Query: 186 KDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVV--MAVHHETRGS 243 ++ N T ++ + L ++ WI + +A +TR Sbjct: 121 PKTADDDLTRLVDLQNINDQTFEDLRSALWYPKILNQAENYPSWIDMGNRLARFKDTRFE 180 Query: 244 SKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLL 303 + K + WS + D E KW R+ + ++F K Sbjct: 181 DEAKTMWLDWSSAAAKGDIEAAEAKWAELRA--------DRTGYQAIFSLAQKAGWVNPG 232 Query: 304 ASRFSDAYNKA-MFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSM 362 A R A F + W DK + I + + Sbjct: 233 AERLKTAVATVDEFDDLTDPT-----ENSKWPTFK----------RDKTSGQIEATIDNA 277 Query: 363 KEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLL 422 + V + ++ F ++ S + F L Sbjct: 278 AKAVMCADFVGVEIRFDALRDEIMFAPVGTKEWQTFTDADYSRLRITMEKRGFRAVGREL 337 Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEE- 481 L + + KS E + + +E+ Sbjct: 338 IRDVVLLAA----------DENPFDSAMEWLKSL-----EWDGIPRIETFYHIHLGTEDT 382 Query: 482 -----VMDYFTRCV-GMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535 V Y + G L G KA + G G GKS+ + ++ + Sbjct: 383 AYTRAVSRYMWTALAGRVLKPGIKADMVPILVGAQGCGKSSGV----------AALSPDP 432 Query: 536 SDIMQNRPPEAGKANPSLIR-LMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594 + + E L R + G + ISE + IK + Sbjct: 433 TFFTEISFAEKDD---DLARKMRGCLVAEISELRGLNTKELESIKAFVTRTHEKWIPKFK 489 Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLE 654 ++ P N+ F+ + RR++ + + D +K Sbjct: 490 EFATQFPRRSLSIGTTNEDEFLGDKTG--NRRWLPVE----VGKMDVEGIKKDV------ 537 Query: 655 AKKWFLKGVKAYISKGLDVDIPEV----------CLKAKEEERQGTDTYQAWIDD 699 + W + + + G+ + E A +E + W+D+ Sbjct: 538 IQLWA-EAREVFNKTGIQFEEAEQLANQIHEKYFIKDAWQE------IIERWLDE 585 >gi|170744754|ref|YP_001773409.1| hypothetical protein M446_6725 [Methylobacterium sp. 4-46] gi|168199028|gb|ACA20975.1| conserved hypothetical protein [Methylobacterium sp. 4-46] Length = 759 Score = 58.0 bits (138), Expect = 6e-06, Method: Composition-based stats. Identities = 36/231 (15%), Positives = 56/231 (24%), Gaps = 16/231 (6%) Query: 4 MQWK---EQAKQAIHNGFKLIPLRLGDK---RPQRLGKWEEQLLSSEKIDKLPACGFGFV 57 + WK +Q + P+ W + + + G GFV Sbjct: 35 VVWKYIWDQKPNKTEGKWDKPPINARTGGNASSSDPETWSDYRTAENRALSGGYDGVGFV 94 Query: 58 CGVGEQPLYAFDID-SKDEKTANTFK-DTFEILHGTPIVRIGQKPKILIPFRMNKEGIKK 115 + + D+D +D +T I G I K L F Sbjct: 95 L-PPDGSISGIDLDKCRDPETGKIAAWAQVAIDFGETYCEISPSGKGLRFFVK-----GA 148 Query: 116 KKTTESTQGHLDILGC-GQYFVAYNIH-PKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYL 173 + + H++I G+Y H P T E + E + E L Sbjct: 149 VEGRKVDAAHVEIYSEGGRYLTVTGQHLPGTPAEIREAPRTIAYLQERADEIKAAQREAL 208 Query: 174 FKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNG 224 + Q K NN T N Sbjct: 209 DRARQLTEKKAGKATDKARDGNRRATGNNPFLDYAAATRKRGSAFFRTINE 259 >gi|261326266|emb|CBH09092.1| hypothetical protein, conserved [Trypanosoma brucei gambiense DAL972] Length = 1249 Score = 58.0 bits (138), Expect = 6e-06, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 41/122 (33%), Gaps = 6/122 (4%) Query: 179 EITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHH 238 + P+ D + S+ T + ++ + +D W+ V +A+H+ Sbjct: 1131 QNAKPVEYDAYGNVVSRYLTESA--KWHRFKTAVEKLHRLPPRAAECYDIWVRVGLALHN 1188 Query: 239 ETRGSSKGKEIARRWSKQGS-TYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKL 297 + E R+S + Y E KW FD D R F L + Sbjct: 1189 FSNEDHV-FEEWVRFSLKCPQKYSRETCRRKWQQFDRNP--DALNWRRGFNYLNSTVWRS 1245 Query: 298 IP 299 +P Sbjct: 1246 VP 1247 >gi|115504605|ref|XP_001219095.1| hypothetical protein [Trypanosoma brucei TREU927] gi|83642577|emb|CAJ16608.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain 927/4 GUTat10.1] Length = 1249 Score = 58.0 bits (138), Expect = 6e-06, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 41/122 (33%), Gaps = 6/122 (4%) Query: 179 EITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHH 238 + P+ D + S+ T + ++ + +D W+ V +A+H+ Sbjct: 1131 QNAKPVEYDAYGNVVSRYLTESA--KWHRFKTAVEKLHRLPPRAAECYDIWVRVGLALHN 1188 Query: 239 ETRGSSKGKEIARRWSKQGS-TYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKL 297 + E R+S + Y E KW FD D R F L + Sbjct: 1189 FSNEDHV-FEEWVRFSLKCPQKYSRETCRRKWQQFDRNP--DALNWRRGFNYLNSTVWRS 1245 Query: 298 IP 299 +P Sbjct: 1246 VP 1247 >gi|123188240|ref|XP_001281798.1| hypothetical protein [Trichomonas vaginalis G3] gi|121837379|gb|EAX68868.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 211 Score = 58.0 bits (138), Expect = 7e-06, Method: Composition-based stats. Identities = 32/201 (15%), Positives = 61/201 (30%), Gaps = 15/201 (7%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKILNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T E Sbjct: 69 MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTPEFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724 + IP + ++ + + +ID+ + + SL SY +Y ++ Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE 178 Query: 725 ELNYDRKRISTRTVTLNLKQK 745 Y S RT N+K Sbjct: 179 ---YGYMTASKRTFLANVKSL 196 >gi|222530720|ref|YP_002574609.1| hypothetical protein Athe_2776 [Caldicellulosiruptor bescii DSM 6725] gi|222457567|gb|ACM61828.1| hypothetical protein Athe_2776 [Caldicellulosiruptor bescii DSM 6725] Length = 718 Score = 57.6 bits (137), Expect = 7e-06, Method: Composition-based stats. Identities = 30/180 (16%), Positives = 59/180 (32%), Gaps = 15/180 (8%) Query: 7 KEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKL-PACGFGFVCGVGEQPL 65 ++ + G +L L K+P + ++L E ++ G G Sbjct: 6 RKYLEFYKGIGLRLTALN--GKKPFLADWYYKELSDEELLEYWAQGYNIGGKMGEKS--C 61 Query: 66 YAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIK---KKKTTEST 122 + DID AN D + + R + L+ F N + +K K Sbjct: 62 WMVDIDIDHP-AANKIVDLYLPIDTLKFGRATKPLSHLLYFSENCKSLKRDFKFSNQTEK 120 Query: 123 QGHLDILGCGQYFVAYNI-HPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEIT 181 ++I GQ + HP TK+E + ++++ + + + T Sbjct: 121 TTIVEIRSTGQQTMIPPSIHPDTKEELRFVG-----ELKEPLKIEADLLTAAVNKIAAAT 175 >gi|310286604|ref|YP_003937862.1| phage primase [Bifidobacterium bifidum S17] gi|309250540|gb|ADO52288.1| putative phage primase [Bifidobacterium bifidum S17] Length = 795 Score = 57.6 bits (137), Expect = 7e-06, Method: Composition-based stats. Identities = 47/368 (12%), Positives = 112/368 (30%), Gaps = 56/368 (15%) Query: 322 GHFLYTADTKAWYKKDKNNVYIWSLTL----DKITASIMN--FLVSMKEDVFDLSEEPED 375 GH Y + +++D + SI + + + D Sbjct: 80 GHLRYCPSQRRLWRRDPDVEDHAGDRRLLNSWHPIKSIEDEYHIGNSANDRNRNYSMSAT 139 Query: 376 NNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGI 435 + +K +++ + + ++ + + R + + Sbjct: 140 IMREAKRAQWFRQVERGVR--------------IDPCVWYR-------QNGRVICVRG-- 176 Query: 436 LDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALL 495 D + + ++ + ++L + + + L Sbjct: 177 -DTDMAVTQTFDPKGMSNQAI----EQAVSICKWL-----TVDDKSCANLLRMFATPWL- 225 Query: 496 GGNKAQRFIHIRGVGGSGKSTL-MNLIKYAFGNQ--YVINAEASDIMQNRPPEAGKANPS 552 Q + G GG GK+ L +N ++ G++ Y + A + + N + Sbjct: 226 -EPFKQLSFVLSGHGGDGKTLLMVNAVQSVLGDRKSYPAFSAARYCEKGFGLASESMNDA 284 Query: 553 LIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612 + G V E+ E ++ ++ G + AR+ G Y + T I+ N Sbjct: 285 MA---GMAFVYDDESAGVTEAMLPALRSLSTGATVNARVVGGK-YYSMTPTATIVILTN- 339 Query: 613 HLFVRNPDDAWWRRYIVIPFDKPIANR-DASFAQKLETKYTLEAKKWFLKGVKAYISKGL 671 F + + + RR++ + + D A +L + A + + +G Sbjct: 340 MPFADSSEPSDKRRFVKVEMHRSDGRSFDEYHAIELFIREHPAALYAA--SCRLW-EQG- 395 Query: 672 DVDIPEVC 679 D PE+ Sbjct: 396 --DEPELV 401 Score = 46.4 bits (108), Expect = 0.020, Method: Composition-based stats. Identities = 19/261 (7%), Positives = 51/261 (19%), Gaps = 21/261 (8%) Query: 35 KWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFK-------DTFEI 87 W++ L V D+D + + Sbjct: 532 NWKKLALDPNVDTSQVPANVEAYAVVPAPGFMVIDMDMSKASGDDGWTVLNRQVGRYGTP 591 Query: 88 LHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGH-------LDIL-GCGQYFVAYN 139 + + +R+ + + K + +D+ Y + Sbjct: 592 AFPATYLVRTPSGGLHAYYRLPEALHGRVKNAVHLKTGEYPDGIPVDLRVERKGYVIGAG 651 Query: 140 IHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTN 199 +Y P + + +E + + +P+ Sbjct: 652 STVNEG-DYRVCDLPGDDGIPEASAQICRWLESIGSIENTTPGLSASAPRRQLPAAGGIT 710 Query: 200 NNNRQYTNREITAFLSCFGEEFYN---GSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQ 256 + + G A ++I ++ Sbjct: 711 GLDIDRVMADEPPVRRRSGRPDMTPVPEGQRNQTLHDWAYGRAVNHPENLRQIEADLYER 770 Query: 257 G--STYDEENFNYKWDTFDFE 275 G S + W + + Sbjct: 771 GHASGLKDNELATIWKSITRQ 791 >gi|123153529|ref|XP_001277835.1| hypothetical protein [Trichomonas vaginalis G3] gi|121822810|gb|EAX64905.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 211 Score = 57.6 bits (137), Expect = 7e-06, Method: Composition-based stats. Identities = 31/201 (15%), Positives = 60/201 (29%), Gaps = 15/201 (7%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T Sbjct: 69 MVSNNAVPMKLESSD---RRYVVVR-TSEAHMQDTEYFDDLAETLTPNFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724 + IP + ++ + + +ID+ + + SL SY +Y ++ Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE 178 Query: 725 ELNYDRKRISTRTVTLNLKQK 745 Y S RT N+K Sbjct: 179 ---YGYMTASKRTFLANVKSL 196 >gi|256833376|ref|YP_003162103.1| hypothetical protein Jden_2163 [Jonesia denitrificans DSM 20603] gi|256686907|gb|ACV09800.1| conserved hypothetical protein [Jonesia denitrificans DSM 20603] Length = 189 Score = 57.6 bits (137), Expect = 8e-06, Method: Composition-based stats. Identities = 21/127 (16%), Positives = 37/127 (29%), Gaps = 16/127 (12%) Query: 22 PLRLGDKRPQRLGKWEEQLLSSEKIDK-------LPACGFGFVCGVGEQPLYAFDIDSK- 73 +R KRP W + G GFV G + D+D Sbjct: 50 WVRRQGKRPLTAKGWFASVTDPRTWATHDEVKASTKGDGIGFVLG---DGVGCIDLDHCI 106 Query: 74 -DEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCG 132 + + +D + V + Q L F + +EG + + ++ G Sbjct: 107 VNGELQGWARDILDR-CPPTFVEVSQSGTGLHIFGLLREGKGRG---QRGGDGVEFYSTG 162 Query: 133 QYFVAYN 139 +Y Sbjct: 163 RYIAVTG 169 >gi|123239780|ref|XP_001287681.1| hypothetical protein [Trichomonas vaginalis G3] gi|121855539|gb|EAX74751.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 211 Score = 57.6 bits (137), Expect = 9e-06, Method: Composition-based stats. Identities = 31/201 (15%), Positives = 60/201 (29%), Gaps = 15/201 (7%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T Sbjct: 69 MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTPNFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724 + IP + ++ + + +ID+ + + SL SY +Y ++ Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE 178 Query: 725 ELNYDRKRISTRTVTLNLKQK 745 Y S RT N+K Sbjct: 179 ---YGYMAASKRTFLANVKNL 196 >gi|123222767|ref|XP_001285517.1| hypothetical protein [Trichomonas vaginalis G3] gi|121849261|gb|EAX72587.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 211 Score = 57.6 bits (137), Expect = 9e-06, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 60/205 (29%), Gaps = 23/205 (11%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T Sbjct: 69 MVSNNAVPMKLESSD---RRYVVVR-TSEAHMQDTEYFDDLAETLTPNFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSE 720 + IP + ++ + + +ID +C D SL SY + Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDSYKQ 174 Query: 721 YREQELNYDRKRISTRTVTLNLKQK 745 Y ++ Y S RT N+K Sbjct: 175 YCQE---YGYMAASKRTFLANVKSL 196 >gi|55376509|ref|YP_134361.1| conjugation protein [Haloarcula marismortui ATCC 43049] gi|55229234|gb|AAV44655.1| bacterial conjugation protein [Haloarcula marismortui ATCC 43049] Length = 1456 Score = 57.6 bits (137), Expect = 9e-06, Method: Composition-based stats. Identities = 32/205 (15%), Positives = 65/205 (31%), Gaps = 31/205 (15%) Query: 585 DCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFA 644 + +R + + PF+ DD++ VI ++ Sbjct: 1271 ESYESREAFEADWV---PVKRPFVPSTDLPVPEYTDDSYA--IGVIE-----DEQNLELY 1320 Query: 645 QKLETKYTLEAKKWFLKGVKAYISK------GLDVDIPEVCLKAKEEERQGTDTYQ--AW 696 + L G+ I G++ D P K+E D + A+ Sbjct: 1321 TRDSDATKD------LAGLIEAIENNELHLAGVEPDEPADKQSMKQE-DHENDPFGIQAF 1373 Query: 697 IDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKI 756 + D + + +Y +Y E Y+ K T L+ +R+K Sbjct: 1374 VRDSIVKSGDGVVAVAEVYDAYEQYATAE-EYEVKP--KNRFTRTLRDH---VAFERDKK 1427 Query: 757 EKEWKSKRIIKGLKLKPAFESVDDN 781 + +++R G++L A + + N Sbjct: 1428 WLDGQTRRCYVGIELDDAGDQEEPN 1452 >gi|313158932|gb|EFR58311.1| conserved hypothetical protein [Alistipes sp. HGB5] Length = 406 Score = 57.6 bits (137), Expect = 9e-06, Method: Composition-based stats. Identities = 41/273 (15%), Positives = 86/273 (31%), Gaps = 32/273 (11%) Query: 397 EENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGE---QDGILDLETGQKVKPTKELYIT 453 + + S+ +S+E +++ + D +L DG + + + ++ Sbjct: 21 KRVRQPLSSGRSVETLIPWNVETLRQDYGKSYLACIPKYDGFCTVPDHTNYRREIDGFLN 80 Query: 454 KSTGTPFVEGE-PSQEFLDLVSGYFESE-EV-MDYFTRCVGMALLGGNKAQRFIHIRGVG 510 + PF + D + F + E+ DY L + + + Sbjct: 81 RYEPIPFQPADGIFPHIHDFFAHIFGEQVELGYDYLQLLY---LRPLQRLPVLLLVSDER 137 Query: 511 GSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN 570 +GK+T +NL+K FG N Q MG ++ + E N Sbjct: 138 NTGKTTFLNLLKSIFGGNVTFNTNEDFRSQFND-----------DWMGKLLICVDEVLLN 186 Query: 571 DEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPN---KHLFVRNPDDAWW-RR 626 ++ +IK ++ A + E + N + + + +W RR Sbjct: 187 RREDSERIKNLSTARSYKAEAKGRDR-REVEFFGKFVLCSNNERNPVLIEAAETRYWVRR 245 Query: 627 YIVIPFDKPIANRDASFAQKLETKYTLEAKKWF 659 +P+D D K+ + Sbjct: 246 VPPLPYD------DQHLLAKM-RAEIPGLLFYL 271 >gi|123338166|ref|XP_001294389.1| hypothetical protein [Trichomonas vaginalis G3] gi|121872288|gb|EAX81459.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 211 Score = 57.6 bits (137), Expect = 9e-06, Method: Composition-based stats. Identities = 32/203 (15%), Positives = 60/203 (29%), Gaps = 19/203 (9%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T Sbjct: 69 MVSNNVVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTPNFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHS--LAKSYSEYR 722 + IP + ++ + + +ID+ N +E L SY +Y Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE------NDFECLDERSLYDSYKQYC 176 Query: 723 EQELNYDRKRISTRTVTLNLKQK 745 ++ Y S RT N+K Sbjct: 177 QE---YGYMTASKRTFLANVKNL 196 >gi|123239292|ref|XP_001287577.1| hypothetical protein [Trichomonas vaginalis G3] gi|121855262|gb|EAX74647.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 211 Score = 57.2 bits (136), Expect = 1e-05, Method: Composition-based stats. Identities = 31/201 (15%), Positives = 60/201 (29%), Gaps = 15/201 (7%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T Sbjct: 69 MVSNNVVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTPNFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724 + IP + ++ + + +ID+ + + SL SY +Y ++ Sbjct: 125 DISNFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE 178 Query: 725 ELNYDRKRISTRTVTLNLKQK 745 Y S RT N+K Sbjct: 179 ---YGYMAASKRTFLANVKSL 196 >gi|292496079|gb|ADE29180.1| conserved hypothetical protein [uncultured virus] Length = 266 Score = 57.2 bits (136), Expect = 1e-05, Method: Composition-based stats. Identities = 21/191 (10%), Positives = 62/191 (32%), Gaps = 29/191 (15%) Query: 613 HLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWF-----LKGVKAYI 667 + A WRR+++I F ++ E + L+G+ Sbjct: 1 MPVFSQDNHAIWRRWLLIEFPFTFSDE---LPDAKEPADREQLLSRMTTDEQLEGLLLLC 57 Query: 668 S---KGLDVDIPEV------------CLKAKEEERQGTDTYQAWIDDCCDIG--ENLWEE 710 + D P+ + +E+ ++ + A+ C + ++ + Sbjct: 58 QQEIERWKPDGPDGDVNEEFFADAAPVPQVREKMKKAAEPVFAFSAACLEPADKDDAFLL 117 Query: 711 SHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLK 770 + + Y + ++E D ++ L + ++ ++ + + K + +G++ Sbjct: 118 KDRVRRCYQAFADEE---DVPNLTANEFGERLVNQR-DMSLQSDRKMIDGQRKYVYQGVQ 173 Query: 771 LKPAFESVDDN 781 P + Sbjct: 174 FTPRGRQLLGE 184 >gi|312878208|ref|ZP_07738135.1| Primase 1 [Caldicellulosiruptor lactoaceticus 6A] gi|311795021|gb|EFR11423.1| Primase 1 [Caldicellulosiruptor lactoaceticus 6A] Length = 181 Score = 57.2 bits (136), Expect = 1e-05, Method: Composition-based stats. Identities = 17/97 (17%), Positives = 31/97 (31%), Gaps = 4/97 (4%) Query: 89 HGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEY 148 + +I + F+ ++ I + + +DI G G Y + EY Sbjct: 8 LPDTVEQITGSGGRHLLFKYPEDVI--VPCRVNIRPGIDIRGDGGYIIVEPSKHIRG-EY 64 Query: 149 TWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLV 185 W H V + +E + + E PL Sbjct: 65 CWEVSSHPLDVP-IAEAPKWLIELVAEKPVETKKPLD 100 >gi|123359946|ref|XP_001295816.1| hypothetical protein [Trichomonas vaginalis G3] gi|121874988|gb|EAX82886.1| hypothetical protein TVAG_223110 [Trichomonas vaginalis G3] Length = 211 Score = 57.2 bits (136), Expect = 1e-05, Method: Composition-based stats. Identities = 29/201 (14%), Positives = 60/201 (29%), Gaps = 15/201 (7%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQIVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T + Sbjct: 69 MVSNNAVPMKFESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724 + IP + ++ + + +I++ + + SL Y +Y ++ Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIEE----SDFECLDEKSLYDEYKQYCQE 178 Query: 725 ELNYDRKRISTRTVTLNLKQK 745 Y S RT N+K Sbjct: 179 ---YGYMPASKRTFLANVKSL 196 >gi|123297526|ref|XP_001290853.1| hypothetical protein [Trichomonas vaginalis G3] gi|121864049|gb|EAX77923.1| hypothetical protein TVAG_583510 [Trichomonas vaginalis G3] Length = 211 Score = 57.2 bits (136), Expect = 1e-05, Method: Composition-based stats. Identities = 32/205 (15%), Positives = 59/205 (28%), Gaps = 23/205 (11%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T Sbjct: 69 MVSNNAVPMKLESSD---RRYVVVR-TSEAHMQDTEYFDDLAETLTPNFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSE 720 + IP + ++ + + +ID +C D SL Y + Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDEYKQ 174 Query: 721 YREQELNYDRKRISTRTVTLNLKQK 745 Y ++ Y S RT N+K Sbjct: 175 YCQE---YGYMTASKRTFLANVKNL 196 >gi|261492426|ref|ZP_05988982.1| phage DNA primase-like protein [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496392|ref|ZP_05992786.1| phage DNA primase-like protein [Mannheimia haemolytica serotype A2 str. OVINE] gi|261307977|gb|EEY09286.1| phage DNA primase-like protein [Mannheimia haemolytica serotype A2 str. OVINE] gi|261311885|gb|EEY13032.1| phage DNA primase-like protein [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 187 Score = 57.2 bits (136), Expect = 1e-05, Method: Composition-based stats. Identities = 27/189 (14%), Positives = 53/189 (28%), Gaps = 36/189 (19%) Query: 606 PFIVPNKHLF-VRNPDDAWWRRYIVIPFDK--PIANRDASFAQKLETKYTLEAKKWFLKG 662 F+ N RR ++ FD+ PI RD + K++ T + Sbjct: 4 VFMTTNNTPILFTENSGGTERRRVIFKFDRIVPIEERDFNLIDKIQ-AETGGIIRLLFD- 61 Query: 663 VKAYISKGLDVDIPEVCLKAKEEERQGT---------DTYQAWIDDCCDIGE-------- 705 P E++R + + + +I Sbjct: 62 ---------TFPEPLEAKALLEKQRVSQEALAVKMEVNHVLEFAQE-FEILPTVNGLAMG 111 Query: 706 ---NLWEESHSLAKSYSEYRE-QELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWK 761 N ++ +Y + + ++ +R TR LK+ RE + Sbjct: 112 SSLNNGTRDSAIYPAYIYFCQLNDIEPINRRTFTRAFKQALKELDKGEYQTRESNGRTVT 171 Query: 762 SKRIIKGLK 770 + I L+ Sbjct: 172 NVHYIDKLR 180 >gi|148256277|ref|YP_001240862.1| hypothetical protein BBta_4941 [Bradyrhizobium sp. BTAi1] gi|146408450|gb|ABQ36956.1| hypothetical protein BBta_4941 [Bradyrhizobium sp. BTAi1] Length = 736 Score = 57.2 bits (136), Expect = 1e-05, Method: Composition-based stats. Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 2/59 (3%) Query: 211 TAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKW 269 A + E + + W+ + A+H E +G ++ RWS + YD KW Sbjct: 215 RAEVERALEVIASDDYQVWLRIGAALHDEF--GDEGFDLFDRWSAKSDKYDNREVERKW 271 >gi|123195131|ref|XP_001283229.1| hypothetical protein [Trichomonas vaginalis G3] gi|121842224|gb|EAX70299.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 211 Score = 57.2 bits (136), Expect = 1e-05, Method: Composition-based stats. Identities = 31/201 (15%), Positives = 60/201 (29%), Gaps = 15/201 (7%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T Sbjct: 69 MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTPNFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724 + IP + ++ + + +ID+ + + SL SY +Y ++ Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE 178 Query: 725 ELNYDRKRISTRTVTLNLKQK 745 Y S RT N+K Sbjct: 179 ---YGYMTASKRTFLANVKNL 196 >gi|123319149|ref|XP_001293155.1| hypothetical protein [Trichomonas vaginalis G3] gi|121869632|gb|EAX80225.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 211 Score = 57.2 bits (136), Expect = 1e-05, Method: Composition-based stats. Identities = 31/201 (15%), Positives = 60/201 (29%), Gaps = 15/201 (7%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T Sbjct: 69 MVSNNVVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTPNFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724 + IP + ++ + + +ID+ + + SL SY +Y ++ Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE 178 Query: 725 ELNYDRKRISTRTVTLNLKQK 745 Y S RT N+K Sbjct: 179 ---YGYMAASKRTFLANVKNL 196 >gi|300172882|ref|YP_003772047.1| prophage DNA replication protein [Leuconostoc gasicomitatum LMG 18811] gi|299887260|emb|CBL91228.1| prophage Lp4 protein 7, DNA replication [Leuconostoc gasicomitatum LMG 18811] Length = 272 Score = 57.2 bits (136), Expect = 1e-05, Method: Composition-based stats. Identities = 24/165 (14%), Positives = 46/165 (27%), Gaps = 18/165 (10%) Query: 8 EQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKL----PAC---GFGFVCGV 60 E +Q G + K G + + +++++ A G Sbjct: 5 EHVRQYQQAGAYVFMALPNQKHNGIAGGFHNSFSNGDELEQWITQYQAYRFGNIGIDL-- 62 Query: 61 GEQPLYAFDIDSKDEKTANTFKDTFEILHGTP------IVRIGQKPKILIPFRMNKEGIK 114 + L DID + + F+ + P V + + + G Sbjct: 63 SKSNLVVVDIDKHGQNGMASILAWFKSHNVNPDTLQDTYVEQTPTGGLHAFYLIPS-GQD 121 Query: 115 KKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKV 159 K K + +D+L V +Y TP + K Sbjct: 122 KPKHIINAIKGVDVLSNT--AVMTAPSTMNGGQYRQITPFDKIKP 164 >gi|123242313|ref|XP_001288212.1| hypothetical protein [Trichomonas vaginalis G3] gi|121857036|gb|EAX75282.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 210 Score = 57.2 bits (136), Expect = 1e-05, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 60/205 (29%), Gaps = 23/205 (11%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFV 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T Sbjct: 69 MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTPNFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSE 720 + IP + ++ + + +ID +C D SL SY + Sbjct: 125 DISNFNPRQIPYT--EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDSYKQ 174 Query: 721 YREQELNYDRKRISTRTVTLNLKQK 745 Y ++ Y S RT N+K Sbjct: 175 YCQE---YGYMAASKRTFLANVKNL 196 >gi|123153670|ref|XP_001277863.1| hypothetical protein [Trichomonas vaginalis G3] gi|123156908|ref|XP_001278545.1| hypothetical protein [Trichomonas vaginalis G3] gi|121823099|gb|EAX64933.1| conserved hypothetical protein [Trichomonas vaginalis G3] gi|121825656|gb|EAX65615.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 211 Score = 57.2 bits (136), Expect = 1e-05, Method: Composition-based stats. Identities = 31/201 (15%), Positives = 62/201 (30%), Gaps = 15/201 (7%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T + Sbjct: 69 MVSNNAVPMKLESSD---RRYVVVR-TSEAHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724 + IP + ++ + + +ID+ + + + SL SY +Y ++ Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFVSLDERSLYDSYKQYCQE 178 Query: 725 ELNYDRKRISTRTVTLNLKQK 745 Y S RT N+K Sbjct: 179 ---YGYMAASKRTFLANVKSL 196 >gi|123345603|ref|XP_001294919.1| hypothetical protein [Trichomonas vaginalis G3] gi|121873338|gb|EAX81989.1| hypothetical protein TVAG_290840 [Trichomonas vaginalis G3] Length = 211 Score = 56.8 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 30/201 (14%), Positives = 59/201 (29%), Gaps = 15/201 (7%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T Sbjct: 69 MVSNNAVPMKLESSD---RRYVVVR-TSEAHMQDTEYFDDLAETLTPNFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724 + IP + ++ + + +ID+ + + SL Y +Y ++ Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFECLDERSLYDEYKQYCQE 178 Query: 725 ELNYDRKRISTRTVTLNLKQK 745 Y S RT N+K Sbjct: 179 ---YGYMAASKRTFLANVKSL 196 >gi|288926420|ref|ZP_06420341.1| conserved hypothetical protein [Prevotella buccae D17] gi|288336793|gb|EFC75158.1| conserved hypothetical protein [Prevotella buccae D17] Length = 396 Score = 56.8 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 34/231 (14%), Positives = 66/231 (28%), Gaps = 29/231 (12%) Query: 433 DGILDLETGQKVKPTKELYITKSTGTPFVEGE-PSQEFLDLVSGYFESE-EV-MDYFTRC 489 +G L +P ++ E LVS F + E+ MDY Sbjct: 54 NGFCTLPDHVNYQPVVANFLNLYEPIDHEPKEGTFSHIEALVSHIFGEQYELGMDYLQLL 113 Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549 L K + + +GKST +N +K F + N Q Sbjct: 114 Y---LKPIQKLPILLLVSEERNTGKSTFLNFLKAIFKDNVTFNTNEDFRSQFN------- 163 Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN-TYSESPASFTPFI 608 G I+++ E N ++ ++K ++ + + + F Sbjct: 164 ----ADWAGKLIIVVDEVLLNRREDSERLKNLSTTHTYKVEAKGKDRSEIAFFSKFVLCS 219 Query: 609 VPNKHLFVRNPDDAWWRRYIVIPFDKPIAN---RDASFAQKLETKYTLEAK 656 + + + + + + I D F +KL + Sbjct: 220 NNEYLPLIIDMGETRY-------WVRKIEKLQSDDTDFLKKL-KEEIPAFL 262 >gi|29830757|ref|NP_825391.1| hypothetical protein SAV_4214 [Streptomyces avermitilis MA-4680] gi|29607870|dbj|BAC71926.1| hypothetical protein [Streptomyces avermitilis MA-4680] Length = 305 Score = 56.8 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 21/142 (14%), Positives = 39/142 (27%), Gaps = 11/142 (7%) Query: 38 EQLLSSEKIDKLPAC-----GFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEIL---- 88 + +I +L A G+G CG+ L D+D+K ++ + Sbjct: 80 DASTDPRRIRRLFAAAPWATGYGIACGLHPHFLIGIDLDTKSGTDSSAALRELALRHLFT 139 Query: 89 HGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEY 148 +V + + + + +DI G G Y V Y Sbjct: 140 IPDTVVVLTPSGGRHVWLSGPPDVVVPNS-AGRLAPGIDIRGAGGYLVGPGSR-TRHGVY 197 Query: 149 TWTTPPHRFKVEDTPLLSEEDV 170 + R P + Sbjct: 198 STAPGTARLAPAPCPTALLRLL 219 >gi|123428312|ref|XP_001307456.1| hypothetical protein [Trichomonas vaginalis G3] gi|121889086|gb|EAX94526.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 210 Score = 56.8 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 60/205 (29%), Gaps = 23/205 (11%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFV 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T Sbjct: 69 MVSNNVVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTPNFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSE 720 + IP + ++ + + +ID +C D SL SY + Sbjct: 125 DISNFNPRQIPHT--EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDSYKQ 174 Query: 721 YREQELNYDRKRISTRTVTLNLKQK 745 Y ++ Y S RT N+K Sbjct: 175 YCQE---YGYMAASKRTFLANVKNL 196 >gi|123315939|ref|XP_001292239.1| hypothetical protein [Trichomonas vaginalis G3] gi|121867498|gb|EAX79309.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 211 Score = 56.8 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 60/205 (29%), Gaps = 23/205 (11%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYRDQRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T Sbjct: 69 MVSNNAVPMKLESSD---RRYVVVR-TSEAHMQDTEYFDDLAETLTPNFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSE 720 + IP + ++ + + +ID +C D SL SY + Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDSYKQ 174 Query: 721 YREQELNYDRKRISTRTVTLNLKQK 745 Y ++ Y S RT N+K Sbjct: 175 YCQE---YGYMTASKRTFLANVKNL 196 >gi|123155897|ref|XP_001278333.1| hypothetical protein [Trichomonas vaginalis G3] gi|121824857|gb|EAX65403.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 211 Score = 56.8 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 31/201 (15%), Positives = 61/201 (30%), Gaps = 15/201 (7%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T + Sbjct: 69 MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDIYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724 + IP + ++ + + +ID+ + + SL SY +Y ++ Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE 178 Query: 725 ELNYDRKRISTRTVTLNLKQK 745 Y S RT N+K Sbjct: 179 ---YGYMTASKRTFLANVKSL 196 >gi|123297023|ref|XP_001290822.1| hypothetical protein [Trichomonas vaginalis G3] gi|121863971|gb|EAX77892.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 211 Score = 56.8 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 30/201 (14%), Positives = 59/201 (29%), Gaps = 15/201 (7%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T Sbjct: 69 MVSNNVVPMKLESSD---RRYVVVR-TSEAHMQDTEYFDDLAETLTPNFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724 + IP + ++ + + +ID+ + + SL Y +Y ++ Sbjct: 125 DISKFNPRQIPYT--EERQTLLEANKSVYELFIDETNFVSLDE----RSLYDEYKQYCQE 178 Query: 725 ELNYDRKRISTRTVTLNLKQK 745 Y S RT N+K Sbjct: 179 ---YGYMAASKRTFLANVKNL 196 >gi|297624036|ref|YP_003705470.1| hypothetical protein Trad_1810 [Truepera radiovictrix DSM 17093] gi|297165216|gb|ADI14927.1| conserved hypothetical protein [Truepera radiovictrix DSM 17093] Length = 273 Score = 56.8 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 36/287 (12%), Positives = 70/287 (24%), Gaps = 52/287 (18%) Query: 5 QWKEQAKQAIHNGFKLIPLRLGDKRPQ---RLGKWEEQLLSSEKIDKLPACGFGFVCGVG 61 QW +Q K +PL R W + + G GFV Sbjct: 14 QWVAWQRQIDGTRVKKVPLDPKMMRSASVVDPDTWSSF---DAACRREHSDGIGFVL-TA 69 Query: 62 EQPLYAFDID--SKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTT 119 + + D+D D + + V + I R N K+ Sbjct: 70 DDGIVGIDLDNCIVDGFVTTAAFKIVDHFNSYTEVSPSGTG-LHIFIRANLNRAWKRT-- 126 Query: 120 ESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQE 179 + ++I G +Y + PL + + Sbjct: 127 -NGSRSVEIYGDRRYLTMTG--------------------DRAPLSRLAIHDRQDELNAF 165 Query: 180 ITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSH----DEWIPVVMA 235 + ++T ++ R A + ++G + +A Sbjct: 166 LAKYDRASSPPRTIARTAPQRDDEDVLQRAANARNGERFRKLWSGDTSAYGHDHNRADLA 225 Query: 236 VHH--------------ETRGSSKGKEIARRWSKQGSTYDEENFNYK 268 + + R S ++ ++ STY E Sbjct: 226 LCNMLWYWSGDEAQVDRLFRRSGLMRDKWDS-ARGASTYGENLILKA 271 >gi|123412608|ref|XP_001304101.1| hypothetical protein [Trichomonas vaginalis G3] gi|121885530|gb|EAX91171.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 194 Score = 56.8 bits (135), Expect = 1e-05, Method: Composition-based stats. Identities = 26/187 (13%), Positives = 56/187 (29%), Gaps = 15/187 (8%) Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620 + + +N+ +K + Y ++ + + N Sbjct: 6 CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDSRVYENVANFIMVSNNAVPMKLESS 65 Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679 D RRY+V+ +D + L T E + IP Sbjct: 66 D---RRYVVVR-TSDSHMQDTEYFDDLAETLTPEFYNHLFSYFMTLDISNFNPRQIPHT- 120 Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738 + ++ + + ++D+ + + + SL Y +Y ++ Y S RT Sbjct: 121 -EERQTLLEANKSVYELFVDE----TDFVSLDERSLYDEYKQYCQE---YGYMPASKRTF 172 Query: 739 TLNLKQK 745 N+K Sbjct: 173 LANVKTL 179 >gi|304383202|ref|ZP_07365675.1| conserved hypothetical protein [Prevotella marshii DSM 16973] gi|304335673|gb|EFM01930.1| conserved hypothetical protein [Prevotella marshii DSM 16973] Length = 396 Score = 56.8 bits (135), Expect = 2e-05, Method: Composition-based stats. Identities = 37/233 (15%), Positives = 68/233 (29%), Gaps = 27/233 (11%) Query: 433 DGILDLETGQKVKPTKELYITKSTGTPFVEGE-PSQEFLDLVSGYFESE-EV-MDYFTRC 489 DG + +P + ++ E L+ F + E+ +DY Sbjct: 54 DGFCTVPNHVNYQPVVDKFLNLYEPIGHQPKEGEFPHIESLIHHIFGEQYELGIDYLQLL 113 Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549 L K + + +GKST +N +K F N N Q Sbjct: 114 Y---LQPVQKLPILLMVSEERNTGKSTFLNFLKAVFQNNVTFNTNEDFRSQFN------- 163 Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609 G ++++ E N ++ ++K ++ G E + Sbjct: 164 ----ADWAGKLLIVVDEVLLNRREDSERLKNLSTTLSYKVEAK-GKDRDEISFFAKFVLC 218 Query: 610 PNK--HLFVRNPDDA-WWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWF 659 N + + + +W R I + N D F QKL + Sbjct: 219 SNNELLPVIIDVGETRYWVRKI-----NRLENDDTDFLQKL-KAEIPAFLYFL 265 >gi|326778021|ref|ZP_08237286.1| Bifunctional DNA primase/polymerase [Streptomyces cf. griseus XylebKG-1] gi|326658354|gb|EGE43200.1| Bifunctional DNA primase/polymerase [Streptomyces cf. griseus XylebKG-1] Length = 327 Score = 56.8 bits (135), Expect = 2e-05, Method: Composition-based stats. Identities = 28/219 (12%), Positives = 55/219 (25%), Gaps = 32/219 (14%) Query: 29 RPQRLGKWEEQLLSSEK----IDKLPACGFGFVCGVGEQPLYAFDIDSKDEKT------- 77 +P + L +K ID+ P F G L D+D+ Sbjct: 61 KPDMCHGFHAATLDHDKAQSWIDRYPDLNFAISTGPA--GLVIVDLDTNKNGAPIPDKYA 118 Query: 78 ------------ANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGH 125 A + + + I + G+ K+ + Sbjct: 119 NIHGVTDGYDVWALALERYGARHPTDTMQVSTPNGGLHIWHSLPP-GVVVNKSEGAFGWL 177 Query: 126 LDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLV 185 +DI Y + EY V + + + + +L + P Sbjct: 178 VDIRSTNSYIIGPTSV-TKDGEYRRLG-----DVTEPTMAPDWLLHHLEHTGHKPKPPAP 231 Query: 186 KDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNG 224 + I R T +++ L+ E + Sbjct: 232 PRPRIIRQRNDQDEREYRGKTVQDLAHELATAQESERHA 270 >gi|123274452|ref|XP_001289880.1| hypothetical protein [Trichomonas vaginalis G3] gi|121861565|gb|EAX76950.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 211 Score = 56.8 bits (135), Expect = 2e-05, Method: Composition-based stats. Identities = 31/201 (15%), Positives = 61/201 (30%), Gaps = 15/201 (7%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T + Sbjct: 69 MVSNNAVPMKLESSD---RRYVVVR-TSEAHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724 + IP + ++ + + +ID+ + + SL SY +Y ++ Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE 178 Query: 725 ELNYDRKRISTRTVTLNLKQK 745 Y S RT N+K Sbjct: 179 ---YGYMAASKRTFLANVKNL 196 >gi|299533251|ref|ZP_07046635.1| virulence-associated E family protein [Comamonas testosteroni S44] gi|298718781|gb|EFI59754.1| virulence-associated E family protein [Comamonas testosteroni S44] Length = 872 Score = 56.8 bits (135), Expect = 2e-05, Method: Composition-based stats. Identities = 35/235 (14%), Positives = 59/235 (25%), Gaps = 45/235 (19%) Query: 462 EGEPSQEFLDLVSGYFES------EEVMDYFTRCVGMALLGGN--------KAQRFIHIR 507 E + + + +Y ++G K + Sbjct: 504 EWDGKPRLDKWLIHVLGESPETLKAPMDEYLALVGRYWVMGMVWRVMEPGCKFDYMPVLE 563 Query: 508 GVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISET 567 G GG KSTL L+ GK ++ G + I E Sbjct: 564 GKGGLRKSTLGRLL---------AGRPEWFSDTKFDLSRGKEAYE--QVRGKWLYEIQEM 612 Query: 568 NENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627 + + + IK R+ YG+ E P N ++R+ RR+ Sbjct: 613 SSFSKADVNDIKAFVSSMVDNYRVAYGDQAQEFPRQCVLVGSTNDKKYLRDRTG--NRRF 670 Query: 628 IVIPFDKPIANRDASFAQKLETKYTLEAKKW----FLKGVKAYISKGLDVDIPEV 678 +P I +KW + Y G+ E Sbjct: 671 WPVPVRHKIKTE--------------WIEKWRDQLMAEAYALYQQGGVRYTPTEE 711 >gi|123212635|ref|XP_001285303.1| hypothetical protein [Trichomonas vaginalis G3] gi|121848541|gb|EAX72373.1| hypothetical protein TVAG_598520 [Trichomonas vaginalis G3] Length = 211 Score = 56.4 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 32/205 (15%), Positives = 59/205 (28%), Gaps = 23/205 (11%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T Sbjct: 69 MVSNNAVPMKLESSD---RRYVVVR-TSEAHMQDTEYFDDLAETLTPNFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSE 720 + IP + ++ + + +ID +C D SL Y + Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDEYKQ 174 Query: 721 YREQELNYDRKRISTRTVTLNLKQK 745 Y ++ Y S RT N+K Sbjct: 175 YCQE---YGYMTASKRTFLANVKSL 196 >gi|123235220|ref|XP_001286724.1| hypothetical protein [Trichomonas vaginalis G3] gi|121852801|gb|EAX73794.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 211 Score = 56.4 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 32/201 (15%), Positives = 63/201 (31%), Gaps = 15/201 (7%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T + Sbjct: 69 MVSNNTVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGT-DTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQ 724 + IP + ++ + Y+ +ID+ + + + SL SY +Y ++ Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYEQFIDE----TDFVSLDERSLYDSYKQYCQE 178 Query: 725 ELNYDRKRISTRTVTLNLKQK 745 Y S RT N+K Sbjct: 179 ---YGYMTASKRTFLANVKSL 196 >gi|134296560|ref|YP_001120295.1| TOPRIM domain-containing protein [Burkholderia vietnamiensis G4] gi|134139717|gb|ABO55460.1| TOPRIM domain protein [Burkholderia vietnamiensis G4] Length = 797 Score = 56.4 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 31/93 (33%), Gaps = 6/93 (6%) Query: 205 YTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEEN 264 I A LS G D W+ + MA+ E G ++ WS+ S+Y E + Sbjct: 5 ADEERIRAALSHVPA----GDRDTWVQMGMAIKAEL--GEAGFDLWDDWSRSASSYSEAD 58 Query: 265 FNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKL 297 W +F I + + + Sbjct: 59 AKSVWKSFRSGGITIASLFKRAIEHGYRESAPT 91 >gi|329849611|ref|ZP_08264457.1| DNA primase/polymerase [Asticcacaulis biprosthecum C19] gi|328841522|gb|EGF91092.1| DNA primase/polymerase [Asticcacaulis biprosthecum C19] Length = 284 Score = 56.4 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 27/247 (10%), Positives = 70/247 (28%), Gaps = 23/247 (9%) Query: 6 WKEQAKQAIHNGFKLIPLRLGDKR--PQRLGKWEEQLLSSEK---IDKLPACGFGFVCGV 60 + + A G ++P + K+ + + + +++ G Sbjct: 2 FAQVAGHYWAAGLPVVPALINTKKIVRMSVSCTSAMPPTDLQQDWLERHAGDNIALALGP 61 Query: 61 GEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120 + +I++ D + + + + I F+ + Sbjct: 62 CA-GIEVLNINTHD----VSILSILNKVLPKSPWKCFGRRGFNIAFKFAGHRPGQLLDR- 115 Query: 121 STQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEI 180 Q +++ G++ + YT + + + + ++ L FQ Sbjct: 116 DRQTVVEVQSSGRFLLLPPSVHPDGGIYTSRHNLYDST-KTLKPMPKNVLDKLETAFQG- 173 Query: 181 TVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNG--SHDE--WIPVVMAV 236 D P+K N + ++ F + +F NG S + + + Sbjct: 174 ---AGLDIAQRRPAKKAMNGDYLA---AQLKTFAAARATDFCNGRSSLADALRLTCEWWL 227 Query: 237 HHETRGS 243 HH Sbjct: 228 HHTAEDD 234 >gi|123154220|ref|XP_001277976.1| hypothetical protein [Trichomonas vaginalis G3] gi|121823537|gb|EAX65046.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 211 Score = 56.4 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 60/205 (29%), Gaps = 23/205 (11%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFV 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T Sbjct: 69 MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTPNFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSE 720 + IP + ++ + + +ID +C D SL SY + Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDSYKQ 174 Query: 721 YREQELNYDRKRISTRTVTLNLKQK 745 Y ++ Y S RT N+K Sbjct: 175 YCQE---YGYMTASKRTFLANVKNL 196 >gi|48843687|ref|YP_025258.1| helicase [Neodiprion lecontii NPV] gi|37694270|gb|AAQ99063.1| helicase [Neodiprion lecontii NPV] Length = 1134 Score = 56.4 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 31/201 (15%), Positives = 71/201 (35%), Gaps = 28/201 (13%) Query: 485 YFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP 543 +F G +L + N + + + G +GK++ + ++ + A++ + +R Sbjct: 828 WFLLMFGASLNIPQNYEKLIVTLTGSSNAGKTSFVQVLGKI-----AVKMPANNFIDHRG 882 Query: 544 PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTG-GDCMTARLNYGNTYSESPA 602 + S I + E NE + A KIK + + R + + + + Sbjct: 883 NGPTEMEFSRA------ICQLYEINEVHKTTAEKIKNIADLSKEVVVRHAHS-SCQKITS 935 Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR-------------DASFAQKLET 649 + P I N+ L + N D A R I++ +D + + ++ Sbjct: 936 QYKPLICNNRMLEIENFDKAVENRLIIVYYDHVFVKKVKFDGSIYDHFIAKQYPDEPIDI 995 Query: 650 KYTLEAK-KWFLKGVKAYISK 669 + + + L K + Sbjct: 996 IESFKILISYILMYYKDVKTN 1016 >gi|160934140|ref|ZP_02081527.1| hypothetical protein CLOLEP_03008 [Clostridium leptum DSM 753] gi|156866813|gb|EDO60185.1| hypothetical protein CLOLEP_03008 [Clostridium leptum DSM 753] Length = 787 Score = 56.4 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 42/318 (13%), Positives = 87/318 (27%), Gaps = 47/318 (14%) Query: 5 QWKEQAKQAIHNGFKLIPLR------LGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVC 58 ++ + + + P + G + W + + G GFV Sbjct: 12 VYRNWIVWRLEDKGRKKPTKVPYCVYGGPAKVNDPRTWSTFDEAVCACQEGDYNGVGFVF 71 Query: 59 GVGEQPLYAFDIDS----KDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIK 114 P DID ++ + + EI + +I Sbjct: 72 --TNTPFIGVDIDGCLDKCSKELSQEAIEVLEIAKSYTELSQSGSGLHIIL-------EG 122 Query: 115 KKKTTESTQGHLDILGCG--QYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEY 172 G+ ++ G G +YF T + Y ++ + + Sbjct: 123 SLPQGRRRNGNFEMYGEGSNRYFAI------TGELY-----------DEYIEIRNDQQAI 165 Query: 173 LFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNG---SHD-E 228 Q I +P ++ SK+ TN + Q R +A + G +D + Sbjct: 166 NTIHQQYIALPCTLSMETKPLSKSVTNLTDDQIIERACSAKNGGRFSSLWAGNISEYDND 225 Query: 229 WIPVVMAVHHET-----RGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKK 283 +A+ R + + R+ +DE + + +E + Sbjct: 226 HSRADLALCRILAFWCQRDFQQIDRLFRQSGLMRPKWDELHGKETYGNMTIQEAVKHCET 285 Query: 284 RSTFTSLFYHHGKLIPKG 301 T + K+ P Sbjct: 286 VYTGGIQNMNTEKVNPNE 303 >gi|291166232|gb|EFE28278.1| helicase [Filifactor alocis ATCC 35896] Length = 3918 Score = 56.4 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 45/358 (12%), Positives = 94/358 (26%), Gaps = 46/358 (12%) Query: 19 KLIPLRLGDK--RPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEK 76 +PL K + W +++ G GF+ G DID + Sbjct: 34 TKLPLMPNGKPAKSNEKTTWNFYEDCIAALNRNIGDGLGFMLG---DGYIGIDIDKVSDD 90 Query: 77 T--------ANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDI 128 A + F T K + G K +L+I Sbjct: 91 IFVYSMDYQARSMTADFLRGISTYAELSPSKTGLHFI------GKGKVPGERKRHKNLEI 144 Query: 129 LGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDV---------EYLFKFFQE 179 G++F K K + E PL + + + + Sbjct: 145 YDEGRFFTVTGNVIKDKDRSH----IKPIEQELLPLYQQYMPAMGNQIEHKQASNEQAKR 200 Query: 180 ITVPLVKDKKSIIPSKTWTNNNNRQYT-----NREITAFLSCFGEEFYNGSHDEWIPVVM 234 T ++ S + + + F + S ++ + Sbjct: 201 STKENHFIQRYRQSSNDVLELLFEKGYFHYTGEDLRRIYYGNYESYFNSRSEADFFMLGR 260 Query: 235 AVHHETR-------GSSKGKEIARRWSKQGSTYDEENFN-YKWDTFDFEEIGDTAKKRST 286 +++ + G + + + ++G+T + + + + Sbjct: 261 LLYYTADVEQAISLMENSGLKREKWYKRRGNTDYIHYIAGKAIGSMNKFYDWEKEYSQKE 320 Query: 287 FTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIW 344 + H K + +G R+ + K + + K F D Y K N Y + Sbjct: 321 QSEWKRHENKEVKEGNTMPRYGFSEVKQIL-DFAKEEFRENIDRYETYLKVVGNNYKY 377 >gi|123314487|ref|XP_001291835.1| hypothetical protein [Trichomonas vaginalis G3] gi|121866468|gb|EAX78905.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 211 Score = 56.4 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 31/201 (15%), Positives = 62/201 (30%), Gaps = 15/201 (7%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T + Sbjct: 69 MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724 + IP + ++ + + +ID+ + + + SL SY +Y ++ Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFVSLDERSLYDSYKQYCQE 178 Query: 725 ELNYDRKRISTRTVTLNLKQK 745 Y S RT N+K Sbjct: 179 ---YGYMTASKRTFLANVKNL 196 >gi|123202307|ref|XP_001284045.1| hypothetical protein [Trichomonas vaginalis G3] gi|121844755|gb|EAX71115.1| hypothetical protein TVAG_606410 [Trichomonas vaginalis G3] Length = 222 Score = 56.4 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 31/201 (15%), Positives = 60/201 (29%), Gaps = 15/201 (7%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 20 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYRDQRVCENVANFV 79 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T Sbjct: 80 MVSNNAVPMKLESSD---RRYVVVR-TSEAHMQDTEYFDDLAETLTPNFYNHLFSYFMTL 135 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724 + IP + ++ + + +ID+ + + SL SY +Y ++ Sbjct: 136 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE 189 Query: 725 ELNYDRKRISTRTVTLNLKQK 745 Y S RT N+K Sbjct: 190 ---YGYMTASKRTFLANVKSL 207 >gi|123189466|ref|XP_001282067.1| hypothetical protein [Trichomonas vaginalis G3] gi|123202877|ref|XP_001284192.1| hypothetical protein [Trichomonas vaginalis G3] gi|121838338|gb|EAX69137.1| conserved hypothetical protein [Trichomonas vaginalis G3] gi|121845178|gb|EAX71262.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 211 Score = 56.4 bits (134), Expect = 2e-05, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 60/205 (29%), Gaps = 23/205 (11%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T Sbjct: 69 MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTPNFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSE 720 + IP + ++ + + +ID +C D SL SY + Sbjct: 125 DISKFNPRQIPYT--EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDSYKQ 174 Query: 721 YREQELNYDRKRISTRTVTLNLKQK 745 Y ++ Y S RT N+K Sbjct: 175 YCQE---YGYMAASKRTFLANVKNL 196 >gi|123272713|ref|XP_001289813.1| hypothetical protein [Trichomonas vaginalis G3] gi|121861384|gb|EAX76883.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 211 Score = 56.0 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 60/205 (29%), Gaps = 23/205 (11%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T Sbjct: 69 MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTPNFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSE 720 + IP + ++ + + +ID +C D SL SY + Sbjct: 125 DISKFNPRQIPYT--EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDSYKQ 174 Query: 721 YREQELNYDRKRISTRTVTLNLKQK 745 Y ++ Y S RT N+K Sbjct: 175 YCQE---YGYMAASKRTFLANVKNL 196 >gi|123351502|ref|XP_001295333.1| hypothetical protein [Trichomonas vaginalis G3] gi|121874076|gb|EAX82403.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 211 Score = 56.0 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 28/200 (14%), Positives = 60/200 (30%), Gaps = 13/200 (6%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + +N+ +K + Y ++ + Sbjct: 9 GKFNSSIENMKLIVCNEFQSIDTTKVLNSDALKSLITDKVGVVERKYKDSRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T E + Sbjct: 69 MVSNNAVPMKLESSD---RRYVVVR-KSDSHMQDTEYFDALSEYLTPEFYNYLFSYFMTL 124 Query: 667 ISKGLDVDIPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQE 725 + + ++ + + ++D+ + + + SL Y +Y ++ Sbjct: 125 DISKFNPRQ-ISHTEERQTLLEANKSVYELFVDE----TDFVSLDEKSLYDEYKQYCQE- 178 Query: 726 LNYDRKRISTRTVTLNLKQK 745 Y S RT N+K Sbjct: 179 --YGYMAASKRTFLANVKSL 196 >gi|312900435|ref|ZP_07759744.1| primase 2 [Enterococcus faecalis TX0470] gi|311292457|gb|EFQ71013.1| primase 2 [Enterococcus faecalis TX0470] Length = 752 Score = 56.0 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 27/206 (13%), Positives = 58/206 (28%), Gaps = 22/206 (10%) Query: 189 KSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKE 248 + + + E+ ++ + EW+ V MA+ E + Sbjct: 2 RLKNKKRELKTQMENKLDLIELLEYIDPASL-----GYQEWVNVGMALKQEGYTAVD--- 53 Query: 249 IARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFS 308 +WS+ S Y KW++F + + +T T L +G P Sbjct: 54 -WDQWSQSDSRYHSGECFKKWESF---QGTSSPITGATITQLAKENGWTSPFKSGDGGHE 109 Query: 309 DAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFD 368 +N + + W + I + I+ +L ++ E Sbjct: 110 LDWNDTLQKDD------LVIIDRNWIE----GKEIQEPKKWEPAKEIIRYLETLFEPSET 159 Query: 369 LSEEPEDNNKNSKSPRFWFNTDYRRQ 394 ++ + + Y R Sbjct: 160 VAYNVQSWQDEDGKWKPSNKGAYDRT 185 >gi|303236520|ref|ZP_07323105.1| virulence-associated protein E [Prevotella disiens FB035-09AN] gi|302483268|gb|EFL46278.1| virulence-associated protein E [Prevotella disiens FB035-09AN] Length = 404 Score = 56.0 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 53/404 (13%), Positives = 115/404 (28%), Gaps = 43/404 (10%) Query: 366 VFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSS 425 + E ++ + Y + S +T ++S Sbjct: 1 MEKERTERRAKQSKNERIEQFLKEHY-AFRFNTVKSRTEFREQDSNTSFRPLTKYDINSM 59 Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGT-------PFVEGEPSQEFLDLVSGYF- 477 R + GI + + K P +GE E + L + Sbjct: 60 RRLVDGTLGIY-TPADNIRAILESDFCNKVNPIREYLLNLPKPKGEDESEIIRLANCVVV 118 Query: 478 --ESEEVMDYFTRCVGMALLGG----NKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVI 531 + + V + + + + G G K+T ++L+ Sbjct: 119 RNPDKWKHYFVKWLVAVVANAMDDLQCRNHTCLVLTGEQGKFKTTFLDLLCP-------E 171 Query: 532 NAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARL 591 ++ P+ + + I I + ++ + ++K + + R Sbjct: 172 ELKSYLFTGKIDPQGKDVQTLIAEYL--FINIDDQLKALNKRDENELKNLITTPRVKYRR 229 Query: 592 NYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKY 651 Y E P + N + F+ +P + RR+ +PF+ + DA+ ++ Y Sbjct: 230 PYDTYIEEYPHLASFMASVNGNDFLTDPTGS--RRF--LPFEVEHIDIDAAKEIDIDKVY 285 Query: 652 TLEAKKWFLKGVKAYISKGLDV--DIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWE 709 + + W + + + + E E + G Sbjct: 286 SEAVELWRVDYHYWFNEEEIAELHQESEGFQVQTAEY------------EMLLKGMEKPA 333 Query: 710 ESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKR 753 + + SE Y +S R + LK+ GF+ KR Sbjct: 334 ATEESYMTTSEILNYLRGYTTLNLSERRMGEALKKAGFLRKSKR 377 >gi|315425757|dbj|BAJ47412.1| hypothetical protein HGMM_F29F08C21 [Candidatus Caldiarchaeum subterraneum] Length = 139 Score = 56.0 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 28/136 (20%), Positives = 43/136 (31%), Gaps = 18/136 (13%) Query: 10 AKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSS--EKIDKLPACGFGFVCGVGEQPLYA 67 A G +IPL GDKRP W+++ + C G L Sbjct: 9 ADDYFSRGLVVIPLVRGDKRPMVSE-WQKKSREELFAVFREHSGCNIGIRL----DSLTV 63 Query: 68 FDIDSKDEKTANTFKDTF-EILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHL 126 DI+ + F +T L V + F+ + T G+ Sbjct: 64 LDIEH--ARLWRLFFETEPRELASKTWVSRTGGGGYHVYFKGS-------TTPSKADGYA 114 Query: 127 DIL-GCGQYFVAYNIH 141 ++ G Q+ VA H Sbjct: 115 ELRSGEKQFVVAPPQH 130 >gi|123243573|ref|XP_001288478.1| hypothetical protein [Trichomonas vaginalis G3] gi|121857773|gb|EAX75548.1| hypothetical protein TVAG_338950 [Trichomonas vaginalis G3] Length = 211 Score = 56.0 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 30/201 (14%), Positives = 60/201 (29%), Gaps = 15/201 (7%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T E Sbjct: 69 MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDALSEYLTPEFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724 + IP + ++ + + +I++ + + SL Y +Y ++ Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIEE----SDFECLDEKSLYDEYKQYCQE 178 Query: 725 ELNYDRKRISTRTVTLNLKQK 745 Y S RT N+K Sbjct: 179 ---YGYMPASKRTFLANVKSL 196 >gi|123239278|ref|XP_001287574.1| hypothetical protein [Trichomonas vaginalis G3] gi|121855254|gb|EAX74644.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 194 Score = 56.0 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 28/187 (14%), Positives = 57/187 (30%), Gaps = 15/187 (8%) Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620 + + +N+ +K + Y ++ + + N Sbjct: 6 CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDSRVCENVANFIMVSNNAVPMKLESS 65 Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679 D RRY+V+ +D + L T E + IP Sbjct: 66 D---RRYVVVR-TSDSHMQDTEYFDDLAETLTPEFYNHLFSYFMTLDISKFNPRQIPHT- 120 Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738 + ++ + + +ID+ + + + SL SY +Y ++ Y S RT Sbjct: 121 -EERQTLLEANKSVYELFIDE----TDFVSLDERSLYDSYKQYCQE---YGYMAASKRTF 172 Query: 739 TLNLKQK 745 N+K Sbjct: 173 LANVKTL 179 >gi|303245314|ref|ZP_07331598.1| hypothetical protein DesfrDRAFT_0073 [Desulfovibrio fructosovorans JJ] gi|302493163|gb|EFL53025.1| hypothetical protein DesfrDRAFT_0073 [Desulfovibrio fructosovorans JJ] Length = 235 Score = 56.0 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 16/99 (16%), Positives = 37/99 (37%), Gaps = 8/99 (8%) Query: 675 IPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIS 734 PE ++ D ++ + CD E + L ++ + ++ D K + Sbjct: 141 CPECAAGSEVAYANEPDIVARFLRERCDRDLEGHETASDLYTAFLAFCVEQGIDDEKALL 200 Query: 735 T-RTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLK 772 R +L L++ +I + + KG++L+ Sbjct: 201 NIRVFSLRLQELPWI-------TKIQAFGAFHYKGVRLR 232 >gi|268319301|ref|YP_003292957.1| hypothetical protein FI9785_817 [Lactobacillus johnsonii FI9785] gi|262397676|emb|CAX66690.1| hypothetical protein predicted by Glimmer/Critica [Lactobacillus johnsonii FI9785] Length = 266 Score = 56.0 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 29/209 (13%), Positives = 58/209 (27%), Gaps = 35/209 (16%) Query: 9 QAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKI----DKLPACGFGFVCGVGEQP 64 A GF +IP+ K+P + L+ ++I K P Sbjct: 8 YAVSYAEKGFSVIPI-GQSKKPLIKFA-GKPPLTPDEIREIWKKYPLANIALKT----DK 61 Query: 65 LYAFD-------IDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKK 117 + D +D + + FE + F K K Sbjct: 62 FFVIDVDRHGGEVDGMESIKKLNHDEWFED------TLTERTAHNGFHFFFTKPKDMKIS 115 Query: 118 TTESTQGHLDILGC-GQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLL--SEEDVEYLF 174 +D+ Y V K+Y W + + P+ + ++ + Sbjct: 116 QNIGILPSVDLKAHENNYVVVAPSSLG-DKKYQW--------LNNAPMKAPPQGLLDLIK 166 Query: 175 KFFQEITVPLVKDKKSIIPSKTWTNNNNR 203 +++ LV + + +T T + Sbjct: 167 DKQKDMPPTLVAEVLQGMRRRTKTTDLFE 195 >gi|123242589|ref|XP_001288281.1| hypothetical protein [Trichomonas vaginalis G3] gi|121857219|gb|EAX75351.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 211 Score = 56.0 bits (133), Expect = 2e-05, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 61/205 (29%), Gaps = 23/205 (11%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFV 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T + Sbjct: 69 MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTPDFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSE 720 + IP + ++ + + +ID +C D SL SY + Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDSYKQ 174 Query: 721 YREQELNYDRKRISTRTVTLNLKQK 745 Y ++ Y S RT N+K Sbjct: 175 YCQE---YGYMAASKRTFLANVKSL 196 >gi|291531537|emb|CBK97122.1| RecA-family ATPase [Eubacterium siraeum 70/3] Length = 739 Score = 56.0 bits (133), Expect = 3e-05, Method: Composition-based stats. Identities = 24/159 (15%), Positives = 52/159 (32%), Gaps = 17/159 (10%) Query: 223 NGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAK 282 + S+ EW+ V MA+ E + WS + Y + KW++F+ Sbjct: 19 DLSYQEWVNVGMALKEE----GYSVTVWDNWSANDNRYHKGECEKKWESFNGSSS----- 69 Query: 283 KRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVY 342 T ++ ++ + + H + K W + Sbjct: 70 -PVTGATIVQMAKDRGMMFGTGEERELDWDDEISYEHHDEHVVV---NKNWIE----GKE 121 Query: 343 IWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSK 381 I + T + I+ +L ++ E ++ + K+ K Sbjct: 122 INAPTDWQPHREIIRYLEALFEQSENVGYVVQSYEKDGK 160 >gi|167749501|ref|ZP_02421628.1| hypothetical protein EUBSIR_00457 [Eubacterium siraeum DSM 15702] gi|167657529|gb|EDS01659.1| hypothetical protein EUBSIR_00457 [Eubacterium siraeum DSM 15702] Length = 739 Score = 56.0 bits (133), Expect = 3e-05, Method: Composition-based stats. Identities = 24/159 (15%), Positives = 52/159 (32%), Gaps = 17/159 (10%) Query: 223 NGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAK 282 + S+ EW+ V MA+ E + WS + Y + KW++F+ Sbjct: 19 DLSYQEWVNVGMALKEE----GYSVTVWDNWSANDNRYHKGECEKKWESFNGSSS----- 69 Query: 283 KRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVY 342 T ++ ++ + + H + K W + Sbjct: 70 -PVTGATIVQMAKDRGMMFGTGEDRELDWDDEISYEHHDEHVVV---NKNWIE----GKE 121 Query: 343 IWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSK 381 I + T + I+ +L ++ E ++ + K+ K Sbjct: 122 INAPTDWQPHREIIRYLEALFEQSENVGYVVQSYEKDGK 160 >gi|20090414|ref|NP_616489.1| hypothetical protein MA1556 [Methanosarcina acetivorans C2A] gi|19915425|gb|AAM04969.1| hypothetical protein (multi-domain) [Methanosarcina acetivorans C2A] Length = 729 Score = 56.0 bits (133), Expect = 3e-05, Method: Composition-based stats. Identities = 31/239 (12%), Positives = 58/239 (24%), Gaps = 35/239 (14%) Query: 6 WKEQAKQAIHNGFKLIPLRLGDK--RPQRLGKWEEQLLSSEKIDKLPA--CGFGFVCGVG 61 WK + ++ N +P R + R W +I + P G GFV Sbjct: 27 WKYEPRKDNPNKPAKVPYRTRTQKARVSNPVTWSNLDYVIRQITRYPEKFDGIGFVFSEN 86 Query: 62 EQPLYAFDIDSK----DEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKK 117 L D D + + L+ + +I Sbjct: 87 T-GLVGVDFDHIRVNETGEIDPVALEEIRALNSYTEISPSGTGVHVIC-------KGVMP 138 Query: 118 TTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFF 177 Q + ++ + K+ DTP E E + ++ Sbjct: 139 AAGRRQDNREMYSDSHFLTFTG-----------------DKLPDTPTTINEAQEAINTYY 181 Query: 178 QEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGS--HDEWIPVVM 234 ++ DK +K + L Y+ + + M Sbjct: 182 EKWFSKSTDDKTLSNEAKKVVKSLKASKKLGAKFKRLFDGDISDYDNDQSRADIALMGM 240 >gi|255067391|ref|ZP_05319246.1| inner membrane protein [Neisseria sicca ATCC 29256] gi|255048361|gb|EET43825.1| inner membrane protein [Neisseria sicca ATCC 29256] Length = 1008 Score = 56.0 bits (133), Expect = 3e-05, Method: Composition-based stats. Identities = 24/108 (22%), Positives = 35/108 (32%), Gaps = 14/108 (12%) Query: 208 REITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNY 267 EI A LS G + D WI + AV E G + WS+ Y+ + Sbjct: 10 DEIRAALSHIGAD----DRDMWIRMGAAVKDE--MGEDGFHLWDEWSQTSGNYNARDAKA 63 Query: 268 KWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAM 315 W +F + +LFYH + + KA Sbjct: 64 AWKSF--------KPGHISIATLFYHARQNGWRPEKPYVPLSDAEKAR 103 >gi|255011106|ref|ZP_05283232.1| hypothetical protein Bfra3_18337 [Bacteroides fragilis 3_1_12] gi|313148914|ref|ZP_07811107.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313137681|gb|EFR55041.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 719 Score = 56.0 bits (133), Expect = 3e-05, Method: Composition-based stats. Identities = 52/298 (17%), Positives = 94/298 (31%), Gaps = 51/298 (17%) Query: 387 FNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDS---------------------S 425 N +RR V + + +++ E S +++ + L+S Sbjct: 330 RNYAFRRNTVLDRLEMCDLSKTKEVKSFYAMRNKDLNSIFLNISRQGIAYPLNSLKSVID 389 Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDY 485 S + E + D G +I K T E + E + Sbjct: 390 SDYTPEFNPFTDYFGGNARWDRTTDHIGKLADTIQAEDQEFWR-----------EGFRRW 438 Query: 486 FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA-FGNQYVINAEASDIMQNRPP 544 V AL G Q+ + + G G GKST + + G Y Sbjct: 439 IVAMVASALQPGKANQQALVLHGAQGKGKSTWIRHLLPPELGEYY-----------RNGM 487 Query: 545 EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604 L+ L ++ + E + A++K++ G + +T R Y P Sbjct: 488 IDPANKDDLLLLSTRLLINMEEFEGVKTGDIAELKRIIGQENVTIRKVYDTQAQLYPRRA 547 Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPFD----KPIANRDASFAQKLETKYTLEAKKW 658 + N F+R D RR++VIP + + +AQ ++ + W Sbjct: 548 SFIGSTNNMQFLR--DYGGNRRFLVIPVKAIDYRTPVDHKGVYAQAVQLIE-DGFRYW 602 >gi|78212480|ref|YP_381259.1| hypothetical protein Syncc9605_0942 [Synechococcus sp. CC9605] gi|78196939|gb|ABB34704.1| hypothetical protein Syncc9605_0942 [Synechococcus sp. CC9605] Length = 321 Score = 56.0 bits (133), Expect = 3e-05, Method: Composition-based stats. Identities = 33/218 (15%), Positives = 58/218 (26%), Gaps = 33/218 (15%) Query: 14 IHNGFKLIPLRLGD-KRPQRLGKWEEQL--LSSEKIDKLPAC-GFGFVCGVGEQPLYAFD 69 + N + IP G + + +W + E I++ P G + QPL FD Sbjct: 21 LENLVRFIPTGGGKEGKAPLISEWSKHPGFTIKELIEQFPRAKSIGVIT----QPLLCFD 76 Query: 70 IDSKDEKTANTFKDTFEILHGTPIV-RIGQKPKILIPFRMNKEGIKKKKTTESTQGHL-- 126 D T + R K + + F +KE + + + T H Sbjct: 77 FDGATAVNHAVLDGRDPDDVNTWRINRTTDKNRFKLLFLPSKEQLAQLPNGQITNTHRTK 136 Query: 127 ---------------------DILGC-GQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPL 164 +I G+ + HP + Y W + P Sbjct: 137 RPSTERYPYEEMTFVVKGEAEEIFCHPGRQVIVAGAHPASGGHYFWPNGSGPEALSAPPA 196 Query: 165 LSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNN 202 V L + + K + + Sbjct: 197 EWWGHVLTLARDYPHPAAGADKTVSTSRFASGNWQRLE 234 >gi|66392091|ref|YP_239316.1| possible integrase [Xanthomonas phage Xp15] gi|62529201|gb|AAX84884.1| possible integrase [Xanthomonas phage Xp15] Length = 806 Score = 56.0 bits (133), Expect = 3e-05, Method: Composition-based stats. Identities = 32/189 (16%), Positives = 55/189 (29%), Gaps = 33/189 (17%) Query: 9 QAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKID---------------KLP--- 50 AK+ +G+ + P + PQ+ W ++ E ID P Sbjct: 8 FAKRFARDGYYVFPFYGSSEGPQKPYGWARNTVTKEGIDPRKIIPATDDPEIVETWPELI 67 Query: 51 ACGFG----FVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTP---IVRIGQKPKIL 103 A G+ GV FD+D K + F +G P V + Sbjct: 68 AAGYKGAKLVGYGVLGVNCVIFDLDVKGGVNGIAEFNKFSEKYGIPKSEFVVKSKSGGFH 127 Query: 104 IPFRMNKE----GIKKKKTT---ESTQGHLDILGCGQYFVAYNIH-PKTKKEYTWTTPPH 155 + + ++ +K + LD+ G G V + YT Sbjct: 128 LYYAKPEKLRSLAVKTVAGLTIGGTKYPGLDVRGEGGMVVGPMAEGQWVEGTYTIVKGNT 187 Query: 156 RFKVEDTPL 164 + + P Sbjct: 188 DTALSEVPT 196 >gi|123497493|ref|XP_001327188.1| hypothetical protein [Trichomonas vaginalis G3] gi|121910114|gb|EAY14965.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 211 Score = 56.0 bits (133), Expect = 3e-05, Method: Composition-based stats. Identities = 31/201 (15%), Positives = 62/201 (30%), Gaps = 15/201 (7%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T + Sbjct: 69 MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724 + IP + ++ + + +ID+ + + + SL SY +Y ++ Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFVSLDERSLYDSYKQYCQE 178 Query: 725 ELNYDRKRISTRTVTLNLKQK 745 Y S RT N+K Sbjct: 179 ---YGYMTASKRTFLANVKSL 196 >gi|123300209|ref|XP_001291001.1| hypothetical protein [Trichomonas vaginalis G3] gi|121864403|gb|EAX78071.1| hypothetical protein TVAG_139410 [Trichomonas vaginalis G3] Length = 197 Score = 56.0 bits (133), Expect = 3e-05, Method: Composition-based stats. Identities = 22/152 (14%), Positives = 45/152 (29%), Gaps = 12/152 (7%) Query: 469 FLDLVSGYF--ESEEVMDYFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLM-NLIKYA 524 +LD V +E+V +Y L K + + I G G+GK+T +++ Sbjct: 53 WLDHVKEIICNGNEKVYEYILCWFANILQHPSAKNETALIIIGKQGTGKNTFFTDILCKL 112 Query: 525 F-GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTG 583 G +I N S+ + + + +N+ +K + Sbjct: 113 LEGYSNPNMTNLENICGKF-------NSSIENMKLIVCNELQSIDTTKVLNSDALKSLIT 165 Query: 584 GDCMTARLNYGNTYSESPASFTPFIVPNKHLF 615 Y + + + N Sbjct: 166 DKVGVVERKYKDQRVCENVANFIMVSNNAVPM 197 >gi|118197555|ref|YP_874267.1| helicase [Ecotropis obliqua NPV] gi|113472550|gb|ABI35757.1| helicase [Ecotropis obliqua NPV] gi|295442616|gb|ADG21232.1| helicase [Ecotropis obliqua NPV] Length = 1251 Score = 56.0 bits (133), Expect = 3e-05, Method: Composition-based stats. Identities = 56/393 (14%), Positives = 113/393 (28%), Gaps = 65/393 (16%) Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEV 482 D ++ + ++ L + TG + + +++ + Sbjct: 882 DLNTWLIRFYTRVI-LSKINLEEYNHFYINNIVTGYLYFRTFTNFNYINSL--------- 931 Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542 + + + ++I G GSGKS+ ++++ + NA++ + + Sbjct: 932 --LVIHYCASLGIPSDYEKMCLYITGKPGSGKSSNTEILEHII-TVHKHNADSYTLSKKE 988 Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIK-QMTGGDCMTARLNYGNTYSESP 601 E I + NE E N + K + Y + Sbjct: 989 TDEMEA---------DKMISQLYVINEMKECNDSFFKTSADSTKSNSVCRKY-QGSQKYE 1038 Query: 602 ASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR------------------DASF 643 A++ I+ NK L++ N D R+ ++ + S+ Sbjct: 1039 ANYKLMIINNKPLYISNYDKGVRNRFAIVNMKHEFVENYKFTGSVYSHIKQQKFPMERSY 1098 Query: 644 AQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQ-----GTDTYQAWI- 697 + L L L K G + A +T A + Sbjct: 1099 YETLYKPVRL-FLSHILM-YKRSKRDGYVSYKNIIKNDAIHNYNLMCLDVNNNTVHALLY 1156 Query: 698 -------DDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGG 750 +DC I E+ E+ +A Y E + K T + Q Sbjct: 1157 ILNVRITNDCKLIDESKIEKMIEMAAPYVETMIHDSM---KLKRNANNTARVPQLCVD-- 1211 Query: 751 IKREKIEKEWKSKRIIKGLKL---KPAFESVDD 780 K++ E ++ R G+ L K F + Sbjct: 1212 FKKKFNEYYRENDRAYCGIDLAWKKNDFNTTPP 1244 >gi|221195525|ref|ZP_03568580.1| RecA-family ATPase [Atopobium rimae ATCC 49626] gi|221184712|gb|EEE17104.1| RecA-family ATPase [Atopobium rimae ATCC 49626] Length = 727 Score = 55.7 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 25/180 (13%), Positives = 53/180 (29%), Gaps = 23/180 (12%) Query: 218 GEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQ-GSTYDEENFNYKWDTFDFEE 276 + S+ EW+ MA+H S + WS+Q + Y E KW +F Sbjct: 14 AIDPAGLSYQEWVDCGMALH----ESGFTWQDWDEWSRQDSARYHEGECERKWKSFGNGV 69 Query: 277 IGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKK 336 +R T ++ + + +I + T W Sbjct: 70 ------ERITSGTIIQMARERGWYPSQGP---------VRAIDWDEPIMVGGITPDW--- 111 Query: 337 DKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNV 396 + + ++L ++ +D + E K+ + + D + + Sbjct: 112 VDEEDVDINGGTWHPARELSDYLQTLFDDSDHVCYVNETYEKDGRYMPKRGHWDRTAEQL 171 >gi|123156424|ref|XP_001278436.1| hypothetical protein [Trichomonas vaginalis G3] gi|121825281|gb|EAX65506.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 211 Score = 55.7 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 31/201 (15%), Positives = 61/201 (30%), Gaps = 15/201 (7%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T + Sbjct: 69 MVSNNAVPMKLESSD---RRYVVVR-TSEAHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724 + IP + ++ + + +ID+ + + SL SY +Y ++ Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE 178 Query: 725 ELNYDRKRISTRTVTLNLKQK 745 Y S RT N+K Sbjct: 179 ---YGYMTASKRTFLANVKSL 196 >gi|300361362|ref|ZP_07057539.1| phage protein [Lactobacillus gasseri JV-V03] gi|300353981|gb|EFJ69852.1| phage protein [Lactobacillus gasseri JV-V03] Length = 269 Score = 55.7 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 29/213 (13%), Positives = 59/213 (27%), Gaps = 35/213 (16%) Query: 9 QAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKI----DKLPACGFGFVCGVGEQP 64 A GF +IP+ K+P + L+ ++I K P Sbjct: 8 YAVSYAEKGFSVIPI-GQSKKPLIKFA-GKPPLTPDEIRKIWQKYPLANIALKT----DK 61 Query: 65 LYAFD-------IDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKK 117 + D +D + + F+ + F K K Sbjct: 62 FFVIDVDRHSGEVDGMESIKNLHHDEWFKD------TLTEKTAHDGFHFFFTKPKDMKIS 115 Query: 118 TTESTQGHLDILGC-GQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLL--SEEDVEYLF 174 +D+ Y V K+Y W + + P+ + ++ + Sbjct: 116 QNIGILPSVDLKAHENNYVVVAPSSLG-DKKYRW--------LNNAPMKAPPQGLLDLIK 166 Query: 175 KFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTN 207 + ++I V + + +T T + N Sbjct: 167 EKQKDIPPTKVAEVLLGMRKRTKTTDLFETIIN 199 >gi|114319952|ref|YP_741635.1| ATPase-like protein [Alkalilimnicola ehrlichii MLHE-1] gi|114226346|gb|ABI56145.1| plasmid and phage replicative helicase / plasmid and phage DNA primase [Alkalilimnicola ehrlichii MLHE-1] Length = 667 Score = 55.7 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 29/239 (12%), Positives = 62/239 (25%), Gaps = 34/239 (14%) Query: 8 EQAKQAIHNGFKLIPLR--------LGDKRPQRLGKWEEQLLSSEK----IDKLPACGFG 55 + A NG + P+ +K P + +E + P Sbjct: 32 DTAAHLAENGIPVFPVNLSEPNADGKREKTPLTKHGHLDATTDAETVRQWWRRWPKAIPA 91 Query: 56 FVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKK 115 G + A D+D + + L + ++ K FR Sbjct: 92 VPTGKAS-GIDALDVD---PDGYEWAAEHSDSLMMAQRIHHTERGK-HYLFRHTD---GV 143 Query: 116 KKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFK 175 + + +D+ G G + V + V D P + + + Sbjct: 144 RNSNGKISAGIDVRGEGGWIVWWPAK-------GLEAHGELADVSDAPEALADLMRGVRS 196 Query: 176 FFQEITVP-------LVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHD 227 + + P + + ++ ++ Y+ E+ A L D Sbjct: 197 STERDSAPVAADGAVIPEGQRDSTLTREAGRLRRYGYSESEMLAALHAINSHRCQPPLD 255 >gi|149003119|ref|ZP_01828028.1| DNA primase [Streptococcus pneumoniae SP14-BS69] gi|147758860|gb|EDK65856.1| DNA primase [Streptococcus pneumoniae SP14-BS69] Length = 173 Score = 55.7 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 16/78 (20%), Positives = 26/78 (33%), Gaps = 1/78 (1%) Query: 622 AWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLK 681 W+RR +IPF + K E +W L V PE K Sbjct: 2 GWYRRLCIIPFRADFNGQKERHEIKDRFIKNKELLEWVLFKVLNM-PDFDSFIEPEAVQK 60 Query: 682 AKEEERQGTDTYQAWIDD 699 + + D + W+++ Sbjct: 61 MLSKYKNDNDYIKVWVEN 78 >gi|123186229|ref|XP_001281462.1| hypothetical protein [Trichomonas vaginalis G3] gi|123195342|ref|XP_001283273.1| hypothetical protein [Trichomonas vaginalis G3] gi|123298008|ref|XP_001290874.1| hypothetical protein [Trichomonas vaginalis G3] gi|121836268|gb|EAX68532.1| conserved hypothetical protein [Trichomonas vaginalis G3] gi|121842391|gb|EAX70343.1| conserved hypothetical protein [Trichomonas vaginalis G3] gi|121864106|gb|EAX77944.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 211 Score = 55.7 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 31/201 (15%), Positives = 62/201 (30%), Gaps = 15/201 (7%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T + Sbjct: 69 MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724 + IP + ++ + + +ID+ + + + SL SY +Y ++ Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFVSLDERSLYDSYKQYCQE 178 Query: 725 ELNYDRKRISTRTVTLNLKQK 745 Y S RT N+K Sbjct: 179 ---YGYMTASKRTFLANVKSL 196 >gi|123251347|ref|XP_001288952.1| hypothetical protein [Trichomonas vaginalis G3] gi|121859138|gb|EAX76022.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 211 Score = 55.7 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 61/205 (29%), Gaps = 23/205 (11%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T + Sbjct: 69 MVSNNAVPMKLESSD---RRYVVVR-TSEAHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSE 720 + IP + ++ + + +ID +C D SL SY + Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDSYKQ 174 Query: 721 YREQELNYDRKRISTRTVTLNLKQK 745 Y ++ Y S RT N+K Sbjct: 175 YCQE---YGYMTASKRTFLANVKSL 196 >gi|123208850|ref|XP_001285170.1| hypothetical protein [Trichomonas vaginalis G3] gi|121848165|gb|EAX72240.1| hypothetical protein TVAG_435260 [Trichomonas vaginalis G3] Length = 211 Score = 55.7 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 32/205 (15%), Positives = 59/205 (28%), Gaps = 23/205 (11%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T Sbjct: 69 MVSNNVVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTPNFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSE 720 + IP + ++ + + +ID +C D SL Y + Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDEYKQ 174 Query: 721 YREQELNYDRKRISTRTVTLNLKQK 745 Y ++ Y S RT N+K Sbjct: 175 YCQE---YGYMAASKRTFLANVKNL 196 >gi|123202912|ref|XP_001284201.1| hypothetical protein [Trichomonas vaginalis G3] gi|121845204|gb|EAX71271.1| hypothetical protein TVAG_023620 [Trichomonas vaginalis G3] Length = 211 Score = 55.7 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 29/201 (14%), Positives = 60/201 (29%), Gaps = 15/201 (7%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T + Sbjct: 69 MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTKYFDDLAETLTSDFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724 + IP + ++ + + +I++ + + SL Y +Y ++ Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIEE----SDFECLDEKSLYDEYKQYCQE 178 Query: 725 ELNYDRKRISTRTVTLNLKQK 745 Y S RT N+K Sbjct: 179 ---YGYMPASKRTFLANVKSL 196 >gi|123164790|ref|XP_001279177.1| hypothetical protein [Trichomonas vaginalis G3] gi|121828046|gb|EAX66247.1| hypothetical protein TVAG_585930 [Trichomonas vaginalis G3] Length = 211 Score = 55.7 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 32/205 (15%), Positives = 59/205 (28%), Gaps = 23/205 (11%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T Sbjct: 69 MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTPNFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSE 720 + IP + ++ + + +ID +C D SL Y + Sbjct: 125 DISKFNPRQIPYT--EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDEYKQ 174 Query: 721 YREQELNYDRKRISTRTVTLNLKQK 745 Y ++ Y S RT N+K Sbjct: 175 YCQE---YGYMAASKRTFLANVKNL 196 >gi|123242990|ref|XP_001288362.1| hypothetical protein [Trichomonas vaginalis G3] gi|121857450|gb|EAX75432.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 211 Score = 55.7 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 30/201 (14%), Positives = 61/201 (30%), Gaps = 15/201 (7%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T + Sbjct: 69 MVSNNTVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724 + IP + ++ + + +ID+ + + + SL Y +Y ++ Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFVSLDERSLYDEYKQYCQE 178 Query: 725 ELNYDRKRISTRTVTLNLKQK 745 Y S RT N+K Sbjct: 179 ---YGYMAASKRTFLANVKNL 196 >gi|123185550|ref|XP_001281343.1| hypothetical protein [Trichomonas vaginalis G3] gi|121835838|gb|EAX68413.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 211 Score = 55.7 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 31/201 (15%), Positives = 61/201 (30%), Gaps = 15/201 (7%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T + Sbjct: 69 MVSNNSVPMKLESSD---RRYVVVR-TSEAHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724 + IP + ++ + + +ID+ + + SL SY +Y ++ Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE 178 Query: 725 ELNYDRKRISTRTVTLNLKQK 745 Y S RT N+K Sbjct: 179 ---YGYMTASKRTFLANVKSL 196 >gi|123318166|ref|XP_001292865.1| hypothetical protein [Trichomonas vaginalis G3] gi|121868943|gb|EAX79935.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 211 Score = 55.7 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 29/201 (14%), Positives = 61/201 (30%), Gaps = 15/201 (7%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T + Sbjct: 69 MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724 + IP + ++ + + +I++ + + + SL Y +Y ++ Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIEE----SDFVSLDERSLYDEYKQYCQE 178 Query: 725 ELNYDRKRISTRTVTLNLKQK 745 Y S RT N+K Sbjct: 179 ---YGYIAASKRTFLANVKSL 196 >gi|322514371|ref|ZP_08067419.1| bacteriophage P4 DNA primase [Actinobacillus ureae ATCC 25976] gi|322119722|gb|EFX91766.1| bacteriophage P4 DNA primase [Actinobacillus ureae ATCC 25976] Length = 203 Score = 55.7 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 22/191 (11%), Positives = 59/191 (30%), Gaps = 19/191 (9%) Query: 587 MTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA--NRDASFA 644 M + + + ++ N+ RR ++ F K + RD +F Sbjct: 1 MRVNPKHKKPFFT-KITALIILINNEPCRFTERAGGVDRRRVIFDFKKVVPESERDPTFT 59 Query: 645 QKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD--CCD 702 +K+ + L + ++ +A E ++ +D + + + Sbjct: 60 EKIML-EVGGIIRKVLDTFPDSLEAKKALNTQMNSQEAL-EVKKLSDPLTDFFEHFYTTE 117 Query: 703 IGENLWEE---------SHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKR 753 + L+ + +Y Y + + + ++Q G + Sbjct: 118 QIDGLFVGVANMGVDKIRTHIYPAYLAY---TRAMNISELGLGNFVIGIEQALKQHGNQH 174 Query: 754 EKIEKEWKSKR 764 + ++K K+ R Sbjct: 175 DFMKKHTKTGR 185 >gi|123299070|ref|XP_001290938.1| hypothetical protein [Trichomonas vaginalis G3] gi|121864255|gb|EAX78008.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 211 Score = 55.7 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 31/201 (15%), Positives = 61/201 (30%), Gaps = 15/201 (7%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T + Sbjct: 69 MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724 + IP + ++ + + +ID+ + + SL SY +Y ++ Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE 178 Query: 725 ELNYDRKRISTRTVTLNLKQK 745 Y S RT N+K Sbjct: 179 ---YGYMTASKRTFLANVKNL 196 >gi|123206430|ref|XP_001284926.1| hypothetical protein [Trichomonas vaginalis G3] gi|121847406|gb|EAX71996.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 211 Score = 55.7 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 61/205 (29%), Gaps = 23/205 (11%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYRDQRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T + Sbjct: 69 MVSNNAVPMKLESSD---RRYVVVR-TSEAHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSE 720 + IP + ++ + + +ID +C D SL SY + Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDSYKQ 174 Query: 721 YREQELNYDRKRISTRTVTLNLKQK 745 Y ++ Y S RT N+K Sbjct: 175 YCQE---YGYMAASKRTFLANVKNL 196 >gi|281203223|gb|EFA77424.1| hypothetical protein PPL_12640 [Polysphondylium pallidum PN500] Length = 557 Score = 55.7 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 52/361 (14%), Positives = 110/361 (30%), Gaps = 40/361 (11%) Query: 422 LDSSSRFLGEQDG--ILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE--FLDLVSGYF 477 ++ + Q+G + +L G K + + K + L+ + + Sbjct: 172 MNPNKPLYYTQNGANMFNLFAGYKWT-DRNSFNVKMNEPEYAARMKLSIGVILNHIRKVW 230 Query: 478 --ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIK-YAFGNQYVINAE 534 ++++ D+ + + G G G +GKS +++ I+ + G Sbjct: 231 CSDNQDQFDFVKYWITSVIAGRRPKLAIYLQSGQG-TGKSIIIDFIRDHVLGE------- 282 Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEND--EIN--AAKIKQMTGGDCMTAR 590 S + Q++ P + L G ++ + + + E N + IK + G + Sbjct: 283 -SIVFQSQDPSIVQPGSFNGPLAGKILISLEDLPTSSAGEWNKTSNSIKHLITGSNIVIN 341 Query: 591 LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASF----AQK 646 + + + + + D RRY ++ N F A Sbjct: 342 DKFKTQVTIDNHLSFIITSNTSAIKIEDDD----RRYAILDVSNIFKNNKDYFEWLAANH 397 Query: 647 LETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGEN 706 L + W + V + + V + K + + +I + + +N Sbjct: 398 LTSAVGEAFYWWCVDNV-DLVKQFNRVPDTQTKTDIKSDHLR---PPLQFIKENFVLQKN 453 Query: 707 -LWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRI 765 L +EY K+IS T K G G +E K Sbjct: 454 ALEMTLKEFYDRLTEYCTN------KKISCPTKPQTKKILGEYGIETKEMCRGGVSGKNN 507 Query: 766 I 766 Sbjct: 508 W 508 >gi|123154829|ref|XP_001278101.1| hypothetical protein [Trichomonas vaginalis G3] gi|121824021|gb|EAX65171.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 211 Score = 55.7 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 31/201 (15%), Positives = 62/201 (30%), Gaps = 15/201 (7%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T + Sbjct: 69 MVSNNVVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724 + IP + ++ + + +ID+ + + + SL SY +Y ++ Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFVSLDERSLYDSYKQYCQE 178 Query: 725 ELNYDRKRISTRTVTLNLKQK 745 Y S RT N+K Sbjct: 179 ---YGYMAASKRTFLANVKSL 196 >gi|123178038|ref|XP_001280154.1| hypothetical protein [Trichomonas vaginalis G3] gi|121831544|gb|EAX67224.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 211 Score = 55.7 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 31/201 (15%), Positives = 61/201 (30%), Gaps = 15/201 (7%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T + Sbjct: 69 MVSNNAVPMKLESSD---RRYVVVR-TSESHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724 + IP + ++ + + +ID+ + + SL SY +Y ++ Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE 178 Query: 725 ELNYDRKRISTRTVTLNLKQK 745 Y S RT N+K Sbjct: 179 ---YGYMTASKRTFLANVKNL 196 >gi|189462690|ref|ZP_03011475.1| hypothetical protein BACCOP_03387 [Bacteroides coprocola DSM 17136] gi|189430559|gb|EDU99543.1| hypothetical protein BACCOP_03387 [Bacteroides coprocola DSM 17136] Length = 397 Score = 55.7 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 36/311 (11%), Positives = 79/311 (25%), Gaps = 49/311 (15%) Query: 353 ASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAG 412 + + ++ + ++P + + W K + Sbjct: 1 MEKKEEFIRVGTTLYKIVDQPRIDGGYVRKRIAWN------SETLRQDYGKDYMAGIPKY 54 Query: 413 SIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDL 472 F D +D + + + + L Sbjct: 55 DGFCTVPDHVDYKPVVGKFLN------LYEPISHRP-------------QEGDFPCIRSL 95 Query: 473 VSGYFES--EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530 V F E+ MDY L K + + +GKST +N +K Sbjct: 96 VEHIFGEQYEQGMDYLQLLY---LYPIQKQPILLLVSEERNTGKSTFLNFLKAI-----Y 147 Query: 531 INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR 590 N + ++ + G ++++ E N ++ ++K ++ Sbjct: 148 QNNVTFNTNEDFRSQFNS------DWAGKLLIMVDEVLLNRREDSERLKNLSTTLSYKVE 201 Query: 591 LNYGN-TYSESPASFTPFIVPNKHLFVRNPDDA-WWRRYIVIPFDKPIANRDASFAQKLE 648 + A F + + + +W R ++P D F QKL Sbjct: 202 AKGKDRDEIGFFAKFVLCSNNEHLPVIIDAGETRYWVR-KIVPLKS----DDTDFLQKL- 255 Query: 649 TKYTLEAKKWF 659 + Sbjct: 256 KTEIPAFLHFL 266 >gi|123237165|ref|XP_001287104.1| hypothetical protein [Trichomonas vaginalis G3] gi|121853910|gb|EAX74174.1| hypothetical protein TVAG_257560 [Trichomonas vaginalis G3] Length = 211 Score = 55.7 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 29/201 (14%), Positives = 60/201 (29%), Gaps = 15/201 (7%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T + Sbjct: 69 MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724 + IP + ++ + + +I++ + + SL Y +Y ++ Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIEE----SDFECLDERSLYDEYKQYCQE 178 Query: 725 ELNYDRKRISTRTVTLNLKQK 745 Y S RT N+K Sbjct: 179 ---YGYMTASKRTFLANVKNL 196 >gi|123376374|ref|XP_001297952.1| hypothetical protein [Trichomonas vaginalis G3] gi|121878332|gb|EAX85022.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 211 Score = 55.7 bits (132), Expect = 3e-05, Method: Composition-based stats. Identities = 29/201 (14%), Positives = 61/201 (30%), Gaps = 15/201 (7%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T + Sbjct: 69 MVSNNTVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724 + IP + ++ + + +I++ + + + SL Y +Y ++ Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIEE----TDFVSLDEKSLYDEYKQYCQE 178 Query: 725 ELNYDRKRISTRTVTLNLKQK 745 Y S RT N+K Sbjct: 179 ---YGYMAASKRTFLANVKNL 196 >gi|218131551|ref|ZP_03460355.1| hypothetical protein BACEGG_03171 [Bacteroides eggerthii DSM 20697] gi|217986483|gb|EEC52820.1| hypothetical protein BACEGG_03171 [Bacteroides eggerthii DSM 20697] Length = 405 Score = 55.7 bits (132), Expect = 4e-05, Method: Composition-based stats. Identities = 37/238 (15%), Positives = 74/238 (31%), Gaps = 34/238 (14%) Query: 435 ILDLETGQKVKPTKELYITKSTGTP--FVEGEPSQ------EFLDLVSGYFESE-EV-MD 484 +D G P+ Y G + + + L+ FE + E+ +D Sbjct: 56 TIDKYNGFCTVPSHTDYQKDVAGFYNLYEPIDHVPAEGNFSDIEKLLHHIFEEQYELGLD 115 Query: 485 YFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544 Y + K + + +GK+T +N +K F + N Q Sbjct: 116 YMQLLY---MQPTQKLPILLLVSEERNTGKTTFLNFLKSIFQDNATFNTNEDFRSQFN-- 170 Query: 545 EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604 G ++++ E + ++ ++K ++ G E Sbjct: 171 ---------ADWAGKLLIVVDEVLLSRREDSERLKNLSTAQTYKVEAK-GKDRQEVNFFA 220 Query: 605 TPFIVPNKHLFVRNPDDA---WWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWF 659 + N L+ D +W R I +P+ + D +F QKL + + Sbjct: 221 KFVLCSNNELYPVIIDPGENRYWVRKI-----RPLESDDTNFLQKL-KEQIPAFLYYL 272 >gi|123316761|ref|XP_001292444.1| hypothetical protein [Trichomonas vaginalis G3] gi|121867977|gb|EAX79514.1| hypothetical protein TVAG_187430 [Trichomonas vaginalis G3] Length = 211 Score = 55.7 bits (132), Expect = 4e-05, Method: Composition-based stats. Identities = 32/205 (15%), Positives = 59/205 (28%), Gaps = 23/205 (11%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T Sbjct: 69 MVSNNVVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTPNFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSE 720 + IP + ++ + + +ID +C D SL Y + Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSIYELFIDETNFECLDE--------RSLYDEYKQ 174 Query: 721 YREQELNYDRKRISTRTVTLNLKQK 745 Y ++ Y S RT N+K Sbjct: 175 YCQE---YGYMAASKRTFLANVKNL 196 >gi|123184152|ref|XP_001281041.1| hypothetical protein [Trichomonas vaginalis G3] gi|121834756|gb|EAX68111.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 202 Score = 55.7 bits (132), Expect = 4e-05, Method: Composition-based stats. Identities = 31/201 (15%), Positives = 61/201 (30%), Gaps = 15/201 (7%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T + Sbjct: 69 MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724 + IP + ++ + + +ID+ + + SL SY +Y ++ Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE 178 Query: 725 ELNYDRKRISTRTVTLNLKQK 745 Y S RT N+K Sbjct: 179 ---YGYMTASKRTFLANVKSL 196 >gi|123145441|ref|XP_001277544.1| hypothetical protein [Trichomonas vaginalis G3] gi|121821678|gb|EAX64614.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 211 Score = 55.7 bits (132), Expect = 4e-05, Method: Composition-based stats. Identities = 31/201 (15%), Positives = 62/201 (30%), Gaps = 15/201 (7%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T + Sbjct: 69 MVSNNVVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724 + IP + ++ + + +ID+ + + + SL SY +Y ++ Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFVSLDERSLYDSYKQYCQE 178 Query: 725 ELNYDRKRISTRTVTLNLKQK 745 Y S RT N+K Sbjct: 179 ---YGYMAASKRTFLANVKSL 196 >gi|220908021|ref|YP_002483332.1| hypothetical protein Cyan7425_2616 [Cyanothece sp. PCC 7425] gi|219864632|gb|ACL44971.1| hypothetical protein Cyan7425_2616 [Cyanothece sp. PCC 7425] Length = 142 Score = 55.3 bits (131), Expect = 4e-05, Method: Composition-based stats. Identities = 18/109 (16%), Positives = 38/109 (34%), Gaps = 27/109 (24%) Query: 18 FKLI-PLRLGDKRPQRLGKWEEQLLSSEKI--DKLPA---CGFGFVCGVGEQPLYAFDID 71 + P++ G K P ++++ L++ ++ G G + G L A D D Sbjct: 42 YAKFTPVKKG-KLP-----YQDEPLTAVEVLERHYNDSCFTGVGLLTGEASGGLVAVDHD 95 Query: 72 SKDEKTANTFKDTFEILHGTPIV---------RIGQKPKILIPFRMNKE 111 + + L G P G+ + + + ++KE Sbjct: 96 GHSAD------EVLKELAGCPPEEALPPTLHWTSGRTGRYQMLYPVSKE 138 >gi|123234264|ref|XP_001286530.1| hypothetical protein [Trichomonas vaginalis G3] gi|121852200|gb|EAX73600.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 194 Score = 55.3 bits (131), Expect = 4e-05, Method: Composition-based stats. Identities = 27/187 (14%), Positives = 54/187 (28%), Gaps = 15/187 (8%) Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620 + + +N+ +K + Y + + + N Sbjct: 6 CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESS 65 Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679 D RRY+V+ +D + L T + IP Sbjct: 66 D---RRYVVVR-TSEAHMQDTEYFDDLAETLTPNFYNHLFSYFMTLDISKFNPRQIPHT- 120 Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738 + ++ + + +ID+ + + SL SY +Y ++ Y S RT Sbjct: 121 -EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE---YGYMTASKRTF 172 Query: 739 TLNLKQK 745 N+K Sbjct: 173 LANVKNL 179 >gi|123455067|ref|XP_001315281.1| hypothetical protein [Trichomonas vaginalis G3] gi|121897953|gb|EAY03058.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 207 Score = 55.3 bits (131), Expect = 4e-05, Method: Composition-based stats. Identities = 31/201 (15%), Positives = 61/201 (30%), Gaps = 15/201 (7%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T + Sbjct: 69 MVSNNAVPMKLESSD---RRYVVVR-TSEAHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724 + IP + ++ + + +ID+ + + SL SY +Y ++ Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE 178 Query: 725 ELNYDRKRISTRTVTLNLKQK 745 Y S RT N+K Sbjct: 179 ---YGYMTASKRTFLANVKSL 196 >gi|237725041|ref|ZP_04555522.1| conserved hypothetical protein [Bacteroides sp. D4] gi|255689901|ref|ZP_05413576.1| conserved hypothetical protein [Bacteroides finegoldii DSM 17565] gi|229436779|gb|EEO46856.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4] gi|260624507|gb|EEX47378.1| conserved hypothetical protein [Bacteroides finegoldii DSM 17565] Length = 405 Score = 55.3 bits (131), Expect = 4e-05, Method: Composition-based stats. Identities = 34/201 (16%), Positives = 64/201 (31%), Gaps = 26/201 (12%) Query: 465 PSQEFLDLVSGYFESE-EV-MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIK 522 + LV F + E+ MDY L K + + +GKST +N +K Sbjct: 94 DFKHIRSLVEHIFGEQYELGMDYLQLLY---LKPTQKLPILLLVSEERNTGKSTFLNFLK 150 Query: 523 YAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMT 582 F + N Q G ++++ E N ++ ++K ++ Sbjct: 151 ALFQDNVTFNTNEDFRSQFN-----------ADWAGKLMIVVDEVLLNRREDSERLKNLS 199 Query: 583 GGDCMTARLNYGNTYSESPASFTPFIVPNK---HLFVRNPDDAWWRRYIVIPFDKPIANR 639 + Y E + N +++ + +W R + + + Sbjct: 200 TAHSYKMESKGKDRY-EVQFFAKFVLCSNNENFPVYIEPEETRYWVRKV-----RRLEKD 253 Query: 640 DASFAQKLETKYTLEAKKWFL 660 D SF QKL + L Sbjct: 254 DTSFLQKL-KNEIPAFLHYLL 273 >gi|123307542|ref|XP_001291384.1| hypothetical protein [Trichomonas vaginalis G3] gi|121865349|gb|EAX78454.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 211 Score = 55.3 bits (131), Expect = 4e-05, Method: Composition-based stats. Identities = 31/201 (15%), Positives = 62/201 (30%), Gaps = 15/201 (7%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T + Sbjct: 69 MVSNNVVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724 + IP + ++ + + +ID+ + + + SL SY +Y ++ Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFVSLDERSLYDSYKQYCQE 178 Query: 725 ELNYDRKRISTRTVTLNLKQK 745 Y S RT N+K Sbjct: 179 ---YGYMTASKRTFLANVKSL 196 >gi|123317250|ref|XP_001292596.1| hypothetical protein [Trichomonas vaginalis G3] gi|121868313|gb|EAX79666.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 211 Score = 55.3 bits (131), Expect = 4e-05, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 61/205 (29%), Gaps = 23/205 (11%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T + Sbjct: 69 MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSE 720 + IP + ++ + + +ID +C D SL SY + Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDSYKQ 174 Query: 721 YREQELNYDRKRISTRTVTLNLKQK 745 Y ++ Y S RT N+K Sbjct: 175 YCQE---YGYMTASKRTFLANVKNL 196 >gi|154151131|ref|YP_001404749.1| hypothetical protein Mboo_1589 [Candidatus Methanoregula boonei 6A8] gi|153999683|gb|ABS56106.1| conserved hypothetical protein [Methanoregula boonei 6A8] Length = 187 Score = 55.3 bits (131), Expect = 4e-05, Method: Composition-based stats. Identities = 21/198 (10%), Positives = 51/198 (25%), Gaps = 35/198 (17%) Query: 4 MQWKEQAKQAIHNGFKLIPLRLGDKR-----PQRLGKWEEQLLSSEKIDKLPACGFGFVC 58 + W+ + + + P + W + ++ G GFV Sbjct: 19 VVWRYEER---NGKLTKPPYVPAPGKMRHALVNVPSTWGTFEQAKNTVNAGGFDGIGFVL 75 Query: 59 GVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKT 118 G ++ D D + G+ + + R +K Sbjct: 76 GE---GIFGIDFDHATDAMVQEALSL-----GSYTEWSPSGHGVHVIGRSAIVLKGRK-- 125 Query: 119 TESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQ 178 +G +++ G+YF D ++S + + F+ Sbjct: 126 ----KGSVELYMQGRYFTVTGSVV-------------PGSPPDIRVISPDRLLDFFRRHF 168 Query: 179 EITVPLVKDKKSIIPSKT 196 E ++ + + Sbjct: 169 EDEPVPGRNNGTGSDTPE 186 >gi|123373543|ref|XP_001297628.1| hypothetical protein [Trichomonas vaginalis G3] gi|121877866|gb|EAX84698.1| hypothetical protein TVAG_353010 [Trichomonas vaginalis G3] Length = 211 Score = 55.3 bits (131), Expect = 4e-05, Method: Composition-based stats. Identities = 30/201 (14%), Positives = 60/201 (29%), Gaps = 15/201 (7%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T + Sbjct: 69 MVSNNAVPMKLESSD---RRYVVVR-TSEAHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724 + IP + ++ + + +ID+ + + SL Y +Y ++ Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFECLDERSLYDEYKQYCQE 178 Query: 725 ELNYDRKRISTRTVTLNLKQK 745 Y S RT N+K Sbjct: 179 ---YGYMTASKRTFLANVKSL 196 >gi|123155901|ref|XP_001278334.1| hypothetical protein [Trichomonas vaginalis G3] gi|121824860|gb|EAX65404.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 201 Score = 55.3 bits (131), Expect = 4e-05, Method: Composition-based stats. Identities = 31/201 (15%), Positives = 61/201 (30%), Gaps = 15/201 (7%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T + Sbjct: 69 MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724 + IP + ++ + + +ID+ + + SL SY +Y ++ Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE 178 Query: 725 ELNYDRKRISTRTVTLNLKQK 745 Y S RT N+K Sbjct: 179 ---YGYMTASKRTFLANVKSL 196 >gi|315607215|ref|ZP_07882219.1| conserved hypothetical protein [Prevotella buccae ATCC 33574] gi|315251269|gb|EFU31254.1| conserved hypothetical protein [Prevotella buccae ATCC 33574] Length = 396 Score = 55.3 bits (131), Expect = 4e-05, Method: Composition-based stats. Identities = 37/233 (15%), Positives = 65/233 (27%), Gaps = 27/233 (11%) Query: 433 DGILDLETGQKVKPTKELYITKSTGTPFVEGE-PSQEFLDLVSGYFESE-EV-MDYFTRC 489 DG + +P + ++ E L+ F + E+ +DY Sbjct: 54 DGFCTVPNHVDYQPVIDKFLNLYEPIGHQPKEGEFPHIESLIRHIFGEQYELGIDYLQLL 113 Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549 L K + + +GKST +N +K F N N Q Sbjct: 114 Y---LQPVQKLPILLMVSEERNTGKSTFLNFLKAVFQNNVTFNTNEDFRSQFN------- 163 Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609 G ++++ E N ++ ++K ++ G E + Sbjct: 164 ----ADWAGKLLIVVDEVLLNRREDSERLKNLSTTLSYKVEAK-GKDRDEISFFAKFVLC 218 Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDKPIAN---RDASFAQKLETKYTLEAKKWF 659 N L D R + + I D F QKL + Sbjct: 219 SNNELLPVIIDVGETR-----YWVRKIERLKSDDTDFLQKL-KAEIPAFLYFL 265 >gi|291444711|ref|ZP_06584101.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] gi|291347658|gb|EFE74562.1| conserved hypothetical protein [Streptomyces roseosporus NRRL 15998] Length = 195 Score = 55.3 bits (131), Expect = 4e-05, Method: Composition-based stats. Identities = 21/133 (15%), Positives = 40/133 (30%), Gaps = 10/133 (7%) Query: 11 KQAIHNGFKLIPLRLG--DKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAF 68 + I + + +PL +G W E G GFV + Sbjct: 48 PRWIRHTARKVPLTIGGATASSTDPSTWSRYS---EAAASGKGAGLGFVL--NGDGVVCL 102 Query: 69 DIDSKDEKTANT--FKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHL 126 D+D ++ + T G V + + L + ++ T G + Sbjct: 103 DLDHCLDEHGEPAGWARTILDAAGPTWVEVSRSGDGLHLWGYGTLPHGRRITVGGG-GSV 161 Query: 127 DILGCGQYFVAYN 139 ++ G G+Y Sbjct: 162 ELYGTGRYIAVTG 174 >gi|327312672|ref|YP_004328109.1| hypothetical protein HMPREF9137_0377 [Prevotella denticola F0289] gi|326944557|gb|AEA20442.1| conserved hypothetical protein [Prevotella denticola F0289] Length = 396 Score = 55.3 bits (131), Expect = 5e-05, Method: Composition-based stats. Identities = 35/233 (15%), Positives = 68/233 (29%), Gaps = 27/233 (11%) Query: 433 DGILDLETGQKVKPTKELYITKSTGTPFVEGE-PSQEFLDLVSGYFESE-EV-MDYFTRC 489 DG + +P + ++ E L+ F + E+ +DY Sbjct: 54 DGFCTVPNHVNYQPVVDKFLNLYEPIGHQPKEGEFPHIESLIHHIFGEQYELGIDYLQLL 113 Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549 L K + + +GKST +N +K F N N Q Sbjct: 114 Y---LQPVQKLPILLMVSEERNTGKSTFLNFLKAVFQNNVTFNTNEDFRSQFN------- 163 Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609 G ++++ E N ++ ++K ++ G E + Sbjct: 164 ----ADWAGKLLIVVDEVLLNRREDSERLKNLSTTLSYKVEAK-GKDRDEISFFAKFVLC 218 Query: 610 PNK--HLFVRNPDDA-WWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWF 659 N + + + +W R I + + D F +KL + Sbjct: 219 SNNELLPVIIDVGETRYWVRKI-----NSLESDDTDFLRKL-KAEIPAFLYFL 265 >gi|284162058|ref|YP_003400681.1| Bifunctional DNA primase/polymerase [Archaeoglobus profundus DSM 5631] gi|284012055|gb|ADB58008.1| Bifunctional DNA primase/polymerase [Archaeoglobus profundus DSM 5631] Length = 309 Score = 55.3 bits (131), Expect = 5e-05, Method: Composition-based stats. Identities = 36/252 (14%), Positives = 72/252 (28%), Gaps = 39/252 (15%) Query: 3 VMQWKEQAKQAIHNGFKLIPLRLGDKRPQRLGKW-----------EEQLLSSEKIDKLPA 51 ++ ++ G+K IPL KRP W + +E + Sbjct: 9 KNEYLSLLEKYDQLGWKFIPL--EGKRPF-WKGWDDPEKWYSGEYSNEETINEIVTSRFK 65 Query: 52 CGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKE 111 G V G + + D+D + + + + + L+ N E Sbjct: 66 FNVGIVTGSLSK-ILRIDVDQP-KILGWNPEPAIKKGG---LAHTTSRGVALVVRSENPE 120 Query: 112 GIKKKKTTESTQGHL-------------------DILGCGQYFVAYNI-HPKTKKEYTWT 151 + K + + +ILG G+ FVA HP + Y W Sbjct: 121 VLAFSKKLVKRKEEIDQSLLFYPEDAGKETVTILEILGDGRQFVAPPSIHPDKRTRYEWL 180 Query: 152 TPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREIT 211 TP + + S E++ L + + + K+ + ++ Sbjct: 181 TPLPNSPDQILTINSIEELYSLLLECCANKELINELFEDYFKEKSRADTGEEGKKADDLL 240 Query: 212 AFLSCFGEEFYN 223 + + Sbjct: 241 EKWLEILLKHLD 252 >gi|123381955|ref|XP_001298632.1| hypothetical protein [Trichomonas vaginalis G3] gi|121879256|gb|EAX85702.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 211 Score = 54.9 bits (130), Expect = 5e-05, Method: Composition-based stats. Identities = 30/201 (14%), Positives = 61/201 (30%), Gaps = 15/201 (7%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T + Sbjct: 69 MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724 + IP + ++ + + +ID+ + + + SL Y +Y ++ Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFVSLDERSLYDEYKQYCQE 178 Query: 725 ELNYDRKRISTRTVTLNLKQK 745 Y S RT N+K Sbjct: 179 ---YGYMAASKRTFLANVKSL 196 >gi|307269951|ref|ZP_07551277.1| primase 2 [Enterococcus faecalis TX4248] gi|306513741|gb|EFM82347.1| primase 2 [Enterococcus faecalis TX4248] Length = 758 Score = 54.9 bits (130), Expect = 5e-05, Method: Composition-based stats. Identities = 24/206 (11%), Positives = 54/206 (26%), Gaps = 22/206 (10%) Query: 189 KSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKE 248 + + + E+ ++ + EW+ V MA+ E + Sbjct: 2 RLKNKKRELNTQMENKLDLIELLEYIDPASL-----GYQEWVNVGMALKQEGYTAVD--- 53 Query: 249 IARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFS 308 +WS+ S Y KW++F T ++ + L Sbjct: 54 -WDQWSQSDSRYHSGECFKKWESF------QGTSSPITGATITQLAKENGWTSLFK-SGD 105 Query: 309 DAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFD 368 + +K + W + I + I+ +L ++ E Sbjct: 106 GGHELDWNDTLQKDDL--VIIDRNWIE----GKEIQEPKKWEPAKEIIRYLETLFEPSET 159 Query: 369 LSEEPEDNNKNSKSPRFWFNTDYRRQ 394 ++ + + Y R Sbjct: 160 VAYNVQSWQDEDGKWKPSNKGAYDRT 185 >gi|123974668|ref|XP_001330087.1| hypothetical protein [Trichomonas vaginalis G3] gi|121895879|gb|EAY01049.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 211 Score = 54.9 bits (130), Expect = 5e-05, Method: Composition-based stats. Identities = 32/205 (15%), Positives = 60/205 (29%), Gaps = 23/205 (11%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T Sbjct: 69 MVSNNVVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTPNFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSE 720 + IP + ++ + + ++D +C D SL SY + Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFVDETNFECLDE--------RSLYDSYKQ 174 Query: 721 YREQELNYDRKRISTRTVTLNLKQK 745 Y ++ Y S RT N+K Sbjct: 175 YCQE---YGYMAASKRTFLANVKSL 196 >gi|123197412|ref|XP_001283786.1| hypothetical protein [Trichomonas vaginalis G3] gi|121843948|gb|EAX70856.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 211 Score = 54.9 bits (130), Expect = 5e-05, Method: Composition-based stats. Identities = 31/201 (15%), Positives = 61/201 (30%), Gaps = 15/201 (7%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T + Sbjct: 69 MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724 + IP + ++ + + +ID+ + + SL SY +Y ++ Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE 178 Query: 725 ELNYDRKRISTRTVTLNLKQK 745 Y S RT N+K Sbjct: 179 ---YGYMAASKRTFLANVKSL 196 >gi|123174757|ref|XP_001279883.1| hypothetical protein [Trichomonas vaginalis G3] gi|121830580|gb|EAX66953.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 210 Score = 54.9 bits (130), Expect = 5e-05, Method: Composition-based stats. Identities = 31/201 (15%), Positives = 61/201 (30%), Gaps = 15/201 (7%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T + Sbjct: 69 MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724 + IP + ++ + + +ID+ + + SL SY +Y ++ Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE 178 Query: 725 ELNYDRKRISTRTVTLNLKQK 745 Y S RT N+K Sbjct: 179 ---YGYMTASKRTFLANVKSL 196 >gi|331091444|ref|ZP_08340282.1| hypothetical protein HMPREF9477_00925 [Lachnospiraceae bacterium 2_1_46FAA] gi|330404000|gb|EGG83550.1| hypothetical protein HMPREF9477_00925 [Lachnospiraceae bacterium 2_1_46FAA] Length = 741 Score = 54.9 bits (130), Expect = 5e-05, Method: Composition-based stats. Identities = 24/175 (13%), Positives = 46/175 (26%), Gaps = 27/175 (15%) Query: 209 EITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYK 268 +I L N + EWI V MA+ + WS+ S Y K Sbjct: 6 DIKQILDFLNPSELN--YQEWIYVGMALK----EDGYDVSVWDSWSRSDSRYHSGECQRK 59 Query: 269 WDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLAS---RFSDAYNKAMFSIYKKGHFL 325 W F T ++ K + ++D K + Sbjct: 60 WAGFHGNGY------PVTAGTIVQMAKDRGWKPEIQGYELDWNDDIFIE-----KDDKVV 108 Query: 326 YTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNS 380 K W + + + ++ +L ++ E ++ + Sbjct: 109 VD---KTWIENVEVQQP----KAWNPASQLIKYLETLFESSENVGYVTQSWKNED 156 >gi|331090165|ref|ZP_08339053.1| hypothetical protein HMPREF1025_02636 [Lachnospiraceae bacterium 3_1_46FAA] gi|330402111|gb|EGG81683.1| hypothetical protein HMPREF1025_02636 [Lachnospiraceae bacterium 3_1_46FAA] Length = 668 Score = 54.9 bits (130), Expect = 5e-05, Method: Composition-based stats. Identities = 17/99 (17%), Positives = 27/99 (27%), Gaps = 14/99 (14%) Query: 217 FGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEE 276 + S +WI V MA+ E S I WS+ Y KW++F Sbjct: 10 KAIDVATLSRADWIAVGMALKEEGYPCS----IWDDWSRNDKRYHPGECERKWNSFHGSG 65 Query: 277 IGDTAKKRSTFTSLFYHHGKLIPKGLLASR----FSDAY 311 ++ + + DA Sbjct: 66 T------PVKGGTIVQMAKERGWTPFSGEDGCLNWDDAI 98 >gi|123275204|ref|XP_001289903.1| hypothetical protein [Trichomonas vaginalis G3] gi|121861630|gb|EAX76973.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 213 Score = 54.9 bits (130), Expect = 5e-05, Method: Composition-based stats. Identities = 31/201 (15%), Positives = 61/201 (30%), Gaps = 15/201 (7%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T + Sbjct: 69 MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724 + IP + ++ + + +ID+ + + SL SY +Y ++ Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE 178 Query: 725 ELNYDRKRISTRTVTLNLKQK 745 Y S RT N+K Sbjct: 179 ---YGYMTASKRTFLANVKSL 196 >gi|123337149|ref|XP_001294312.1| hypothetical protein [Trichomonas vaginalis G3] gi|121872111|gb|EAX81382.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 211 Score = 54.9 bits (130), Expect = 5e-05, Method: Composition-based stats. Identities = 31/201 (15%), Positives = 61/201 (30%), Gaps = 15/201 (7%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T + Sbjct: 69 MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724 + IP + ++ + + +ID+ + + SL SY +Y ++ Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE 178 Query: 725 ELNYDRKRISTRTVTLNLKQK 745 Y S RT N+K Sbjct: 179 ---YGYMTASKRTFLANVKSL 196 >gi|123315019|ref|XP_001291980.1| hypothetical protein [Trichomonas vaginalis G3] gi|121866845|gb|EAX79050.1| hypothetical protein TVAG_153080 [Trichomonas vaginalis G3] Length = 236 Score = 54.9 bits (130), Expect = 5e-05, Method: Composition-based stats. Identities = 22/151 (14%), Positives = 45/151 (29%), Gaps = 12/151 (7%) Query: 469 FLDLVSGYF--ESEEVMDYFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLM-NLIKYA 524 +LD V +E+V +Y L K + + I G G+GK+T +++ Sbjct: 87 WLDHVKEIICNGNEKVYEYILCWFANILQHPSAKNETALIIIGKQGTGKNTFFTDILCKL 146 Query: 525 F-GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTG 583 G +I N S+ + + + +N+ +K + Sbjct: 147 LEGYSNPNMTNIENICGKF-------NSSIENMKLIVCNELQSIDTTKVLNSDALKSLIT 199 Query: 584 GDCMTARLNYGNTYSESPASFTPFIVPNKHL 614 Y + + + N Sbjct: 200 DKVGVVERKYKDQRVCENVANFIMVSNNAVP 230 >gi|123320987|ref|XP_001293288.1| hypothetical protein [Trichomonas vaginalis G3] gi|121869933|gb|EAX80358.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 211 Score = 54.9 bits (130), Expect = 5e-05, Method: Composition-based stats. Identities = 29/201 (14%), Positives = 61/201 (30%), Gaps = 15/201 (7%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T + Sbjct: 69 MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724 + IP + ++ + + +I++ + + + SL Y +Y ++ Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIEE----TDFVSLDEKSLYDEYKQYCQE 178 Query: 725 ELNYDRKRISTRTVTLNLKQK 745 Y S RT N+K Sbjct: 179 ---YGYMAASKRTFLANVKSL 196 >gi|123242108|ref|XP_001288163.1| hypothetical protein [Trichomonas vaginalis G3] gi|123244167|ref|XP_001288618.1| hypothetical protein [Trichomonas vaginalis G3] gi|121856910|gb|EAX75233.1| hypothetical protein TVAG_443280 [Trichomonas vaginalis G3] gi|121858142|gb|EAX75688.1| hypothetical protein TVAG_017120 [Trichomonas vaginalis G3] Length = 196 Score = 54.9 bits (130), Expect = 5e-05, Method: Composition-based stats. Identities = 29/201 (14%), Positives = 60/201 (29%), Gaps = 15/201 (7%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T + Sbjct: 69 MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724 + IP + ++ + + +I++ + + SL Y +Y ++ Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIEE----SDFECLDEKSLYDEYKQYCQE 178 Query: 725 ELNYDRKRISTRTVTLNLKQK 745 Y S RT N+K Sbjct: 179 ---YGYMAASKRTFLANVKSL 196 >gi|123476492|ref|XP_001321418.1| hypothetical protein [Trichomonas vaginalis G3] gi|121904244|gb|EAY09195.1| hypothetical protein TVAG_308840 [Trichomonas vaginalis G3] Length = 211 Score = 54.9 bits (130), Expect = 5e-05, Method: Composition-based stats. Identities = 32/205 (15%), Positives = 59/205 (28%), Gaps = 23/205 (11%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T Sbjct: 69 MVSNNTVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTPNFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSE 720 + IP + ++ + + +ID +C D SL Y + Sbjct: 125 DISKFNPRQIPYT--EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDEYKQ 174 Query: 721 YREQELNYDRKRISTRTVTLNLKQK 745 Y ++ Y S RT N+K Sbjct: 175 YCQE---YGYMAASKRTFLANVKSL 196 >gi|123174904|ref|XP_001279895.1| hypothetical protein [Trichomonas vaginalis G3] gi|121830621|gb|EAX66965.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 202 Score = 54.9 bits (130), Expect = 5e-05, Method: Composition-based stats. Identities = 31/201 (15%), Positives = 61/201 (30%), Gaps = 15/201 (7%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFV 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T + Sbjct: 69 MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724 + IP + ++ + + +ID+ + + SL SY +Y ++ Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE 178 Query: 725 ELNYDRKRISTRTVTLNLKQK 745 Y S RT N+K Sbjct: 179 ---YGYMTASKRTFLANVKSL 196 >gi|123329426|ref|XP_001293819.1| hypothetical protein [Trichomonas vaginalis G3] gi|121871081|gb|EAX80889.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 211 Score = 54.9 bits (130), Expect = 5e-05, Method: Composition-based stats. Identities = 30/201 (14%), Positives = 61/201 (30%), Gaps = 15/201 (7%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T + Sbjct: 69 MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724 + IP + ++ + + +ID+ + + + SL Y +Y ++ Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFVSLDEKSLYDEYKQYCQE 178 Query: 725 ELNYDRKRISTRTVTLNLKQK 745 Y S RT N+K Sbjct: 179 ---YGYMAASKRTFLANVKSL 196 >gi|123205777|ref|XP_001284757.1| hypothetical protein [Trichomonas vaginalis G3] gi|121846924|gb|EAX71827.1| hypothetical protein TVAG_561730 [Trichomonas vaginalis G3] Length = 211 Score = 54.9 bits (130), Expect = 5e-05, Method: Composition-based stats. Identities = 29/201 (14%), Positives = 60/201 (29%), Gaps = 15/201 (7%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T + Sbjct: 69 MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724 + IP + ++ + + +I++ + + SL Y +Y ++ Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIEE----SDFECLDEKSLYDEYKQYCQE 178 Query: 725 ELNYDRKRISTRTVTLNLKQK 745 Y S RT N+K Sbjct: 179 ---YGYMAASKRTFLANVKSL 196 >gi|123195083|ref|XP_001283219.1| hypothetical protein [Trichomonas vaginalis G3] gi|121842186|gb|EAX70289.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 211 Score = 54.9 bits (130), Expect = 5e-05, Method: Composition-based stats. Identities = 31/201 (15%), Positives = 61/201 (30%), Gaps = 15/201 (7%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T + Sbjct: 69 MVSNNVVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724 + IP + ++ + + +ID+ + + SL SY +Y ++ Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE 178 Query: 725 ELNYDRKRISTRTVTLNLKQK 745 Y S RT N+K Sbjct: 179 ---YGYMAASKRTFLANVKSL 196 >gi|123186361|ref|XP_001281482.1| hypothetical protein [Trichomonas vaginalis G3] gi|121836343|gb|EAX68552.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 211 Score = 54.9 bits (130), Expect = 5e-05, Method: Composition-based stats. Identities = 31/201 (15%), Positives = 61/201 (30%), Gaps = 15/201 (7%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T + Sbjct: 69 MVSNNVVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724 + IP + ++ + + +ID+ + + SL SY +Y ++ Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE 178 Query: 725 ELNYDRKRISTRTVTLNLKQK 745 Y S RT N+K Sbjct: 179 ---YGYMAASKRTFLANVKSL 196 >gi|123169872|ref|XP_001279496.1| hypothetical protein [Trichomonas vaginalis G3] gi|121829217|gb|EAX66566.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 211 Score = 54.9 bits (130), Expect = 5e-05, Method: Composition-based stats. Identities = 31/201 (15%), Positives = 61/201 (30%), Gaps = 15/201 (7%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T + Sbjct: 69 MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724 + IP + ++ + + +ID+ + + SL SY +Y ++ Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE 178 Query: 725 ELNYDRKRISTRTVTLNLKQK 745 Y S RT N+K Sbjct: 179 ---YGYMTASKRTFLANVKSL 196 >gi|115352457|ref|YP_774296.1| TOPRIM domain-containing protein [Burkholderia ambifaria AMMD] gi|115282445|gb|ABI87962.1| TOPRIM domain protein [Burkholderia ambifaria AMMD] Length = 797 Score = 54.9 bits (130), Expect = 5e-05, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 24/73 (32%), Gaps = 2/73 (2%) Query: 224 GSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKK 283 D W+ + MA+ E G + WS+ S Y E + W +F I + Sbjct: 20 DDRDTWVQMGMAIKAEF--GEAGFDFWDDWSRSASNYSEADAKSVWKSFRSGGITIASLF 77 Query: 284 RSTFTSLFYHHGK 296 + + Sbjct: 78 KRAIEHGYRESEP 90 >gi|123474667|ref|XP_001320515.1| hypothetical protein [Trichomonas vaginalis G3] gi|121903322|gb|EAY08292.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 210 Score = 54.9 bits (130), Expect = 6e-05, Method: Composition-based stats. Identities = 31/201 (15%), Positives = 61/201 (30%), Gaps = 15/201 (7%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYRDQRVCENVANFV 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T + Sbjct: 69 MVSNNAVPMKLESSD---RRYVVVR-TSEAHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724 + IP + ++ + + +ID+ + + SL SY +Y ++ Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE 178 Query: 725 ELNYDRKRISTRTVTLNLKQK 745 Y S RT N+K Sbjct: 179 ---YGYMTASKRTFLANVKSL 196 >gi|123350206|ref|XP_001295249.1| hypothetical protein [Trichomonas vaginalis G3] gi|121873925|gb|EAX82319.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 211 Score = 54.9 bits (130), Expect = 6e-05, Method: Composition-based stats. Identities = 30/201 (14%), Positives = 61/201 (30%), Gaps = 15/201 (7%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T + Sbjct: 69 MVSNNVVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724 + IP + ++ + + +ID+ + + + SL Y +Y ++ Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFVSLDERSLYDEYKQYCQE 178 Query: 725 ELNYDRKRISTRTVTLNLKQK 745 Y S RT N+K Sbjct: 179 ---YGYMAASKRTFLANVKSL 196 >gi|309702931|emb|CBJ02262.1| putative virulence associated protein virE [Escherichia coli ETEC H10407] Length = 574 Score = 54.9 bits (130), Expect = 6e-05, Method: Composition-based stats. Identities = 65/533 (12%), Positives = 127/533 (23%), Gaps = 120/533 (22%) Query: 124 GHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVP 183 G +++L GQ FVA H + W ++ P ++ E +E L++ E Sbjct: 2 GIIELLANGQQFVACGTH-SSGARIEWDGGL----PDEPPAITGEQLETLWQRLAEQLPV 56 Query: 184 LVKDKKSIIPSKTWTNNNNRQYTN-REITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRG 242 V + + + + E + NG +I H + G Sbjct: 57 SVTTEAGNTKMRDRSAFTPGATDDTAEYLDANGWTLLDGANGER--YIRCPFEDGHSSGG 114 Query: 243 SSKGKEIARRWSKQGSTYDEE-------NFNYKWDTFDFEEIGDTAKKRSTFTSL----- 290 + + +++ + ++ D IG TS+ Sbjct: 115 DPT---STVYFPAGTAGFEQGHFKCLHASCAHRDDGDFLNAIGIRNDDFEDLTSIEVAEP 171 Query: 291 ---------FYHHGKLIPKGLLAS--RFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKN 339 + + + R F ++ A + W Sbjct: 172 LPLPAFERDKWGRIEATISNAAKAVVRSDFVDIDIRFDQFRDEIMFAPAGSGQWRAFTD- 230 Query: 340 NVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEEN 399 +IT F +E + D+ D Sbjct: 231 ----ADYARLRITMEKRGFKPVGRELIRDVVLLAAD------------------------ 262 Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTP 459 + +I + D R + TP Sbjct: 263 -------EQPFDSAITWLNGLEWDGVPRIECF-----------------YHTHFGTADTP 298 Query: 460 FVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMN 519 + + G L G KA + G G GKS+ + Sbjct: 299 YTRAVSMYMWT-----------------ALAGRVLEPGIKADMVPILVGPQGCGKSSGVE 341 Query: 520 LIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIR-LMGSRIVIISETNENDEINAAKI 578 + + + + + E L R + G + I E + I Sbjct: 342 AL----------SPDPAFFTEISFAEKDD---DLARKMRGRLVAEIGELRGLNTKELESI 388 Query: 579 KQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIP 631 K Y ++ P N+ F+ + RR++ + Sbjct: 389 KAFVTRTHENWIPKYREFATQFPRRLVFVGTTNEDEFLADKTG--NRRWLPVE 439 >gi|253566060|ref|ZP_04843514.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|251945164|gb|EES85602.1| conserved hypothetical protein [Bacteroides sp. 3_2_5] gi|301164394|emb|CBW23952.1| conserved hypothetical protein [Bacteroides fragilis 638R] Length = 719 Score = 54.9 bits (130), Expect = 6e-05, Method: Composition-based stats. Identities = 54/315 (17%), Positives = 101/315 (32%), Gaps = 40/315 (12%) Query: 349 DKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQS 408 +++ + + V D E + + KS N D+ + + + + + Sbjct: 323 EQVIDYLNKNYAFRRNTVLDRLEMCDLSQTEEKSFYAMRNKDFNSIFLNISRQGIAYPLN 382 Query: 409 LEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE 468 I S S + + + G K +I K T E + Sbjct: 383 SLKSVIDSDYSPEFNPFTHYF----------EGNARWDRKTDHIRKLADTIQAEDQEFWR 432 Query: 469 FLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 E + V AL G Q + + G G GKST + + Sbjct: 433 -----------EGFRRWIVAMVASALRPGKANQEALVLHGAQGKGKSTWIRHL------- 474 Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI-NAAKIKQMTGGDCM 587 R AN + L+ +R++I E E + + A++K++ G + + Sbjct: 475 ----LPPELAEYYRNGMIDPANKDDLLLLSTRLLINMEEFEGVKTGDIAELKRIIGQENV 530 Query: 588 TARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFD----KPIANRDASF 643 T R Y P + N F++ D RR++VIP + + + Sbjct: 531 TIRKVYDTQAQLYPRRASFIGSTNNMQFLK--DYGGNRRFLVIPVKTIDYRTPVDHKGVY 588 Query: 644 AQKLETKYTLEAKKW 658 AQ ++ + W Sbjct: 589 AQAVQLIE-DGFRYW 602 >gi|123225083|ref|XP_001285735.1| hypothetical protein [Trichomonas vaginalis G3] gi|121849888|gb|EAX72805.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 211 Score = 54.9 bits (130), Expect = 6e-05, Method: Composition-based stats. Identities = 31/201 (15%), Positives = 61/201 (30%), Gaps = 15/201 (7%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T + Sbjct: 69 MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724 + IP + ++ + + +ID+ + + SL SY +Y ++ Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE 178 Query: 725 ELNYDRKRISTRTVTLNLKQK 745 Y S RT N+K Sbjct: 179 ---YGYMTASKRTFLANVKSL 196 >gi|53714955|ref|YP_100947.1| hypothetical protein BF3670 [Bacteroides fragilis YCH46] gi|52217820|dbj|BAD50413.1| conserved hypothetical protein [Bacteroides fragilis YCH46] Length = 719 Score = 54.9 bits (130), Expect = 6e-05, Method: Composition-based stats. Identities = 54/315 (17%), Positives = 101/315 (32%), Gaps = 40/315 (12%) Query: 349 DKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQS 408 +++ + + V D E + + KS N D+ + + + + + Sbjct: 323 EQVIDYLNKNYAFRRNTVLDRLEMCDLSQTEEKSFYAMRNKDFNSIFLNISRQGIAYPLN 382 Query: 409 LEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE 468 I S S + + + G K +I K T E + Sbjct: 383 SLKSVIDSDYSPEFNPFTHYF----------EGNARWDRKTDHIRKLADTIQAEDQEFWR 432 Query: 469 FLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 E + V AL G Q + + G G GKST + + Sbjct: 433 -----------EGFRRWIVAMVASALRPGKANQEALVLHGAQGKGKSTWIRHL------- 474 Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI-NAAKIKQMTGGDCM 587 R AN + L+ +R++I E E + + A++K++ G + + Sbjct: 475 ----LPPELAEYYRNGMIDPANKDDLLLLSTRLLINMEEFEGVKTGDIAELKRIIGQENV 530 Query: 588 TARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFD----KPIANRDASF 643 T R Y P + N F++ D RR++VIP + + + Sbjct: 531 TIRKVYDTQAQLYPRRASFIGSTNNMQFLK--DYGGNRRFLVIPVKTIDYRTPVDHKGVY 588 Query: 644 AQKLETKYTLEAKKW 658 AQ ++ + W Sbjct: 589 AQAVQLIE-DGFRYW 602 >gi|123205982|ref|XP_001284808.1| hypothetical protein [Trichomonas vaginalis G3] gi|121847076|gb|EAX71878.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 211 Score = 54.9 bits (130), Expect = 6e-05, Method: Composition-based stats. Identities = 30/201 (14%), Positives = 62/201 (30%), Gaps = 15/201 (7%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T + Sbjct: 69 MVSNNTVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724 + IP + ++ + + ++D+ + + + SL SY +Y ++ Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFVDE----TDFVSLDERSLYDSYKQYCQE 178 Query: 725 ELNYDRKRISTRTVTLNLKQK 745 Y S RT N+K Sbjct: 179 ---YGYMTASKRTFLANVKSL 196 >gi|123472584|ref|XP_001319485.1| hypothetical protein [Trichomonas vaginalis G3] gi|121902269|gb|EAY07262.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 211 Score = 54.9 bits (130), Expect = 6e-05, Method: Composition-based stats. Identities = 31/201 (15%), Positives = 61/201 (30%), Gaps = 15/201 (7%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T + Sbjct: 69 MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724 + IP + ++ + + +ID+ + + SL SY +Y ++ Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE 178 Query: 725 ELNYDRKRISTRTVTLNLKQK 745 Y S RT N+K Sbjct: 179 ---YGYMTASKRTFLANVKSL 196 >gi|123395142|ref|XP_001300690.1| hypothetical protein [Trichomonas vaginalis G3] gi|121881768|gb|EAX87760.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 211 Score = 54.9 bits (130), Expect = 6e-05, Method: Composition-based stats. Identities = 30/201 (14%), Positives = 61/201 (30%), Gaps = 15/201 (7%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T + Sbjct: 69 MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724 + IP + ++ + + +ID+ + + + SL Y +Y ++ Sbjct: 125 DISKFNPRQIPHT--EERQTLLETNKSVYELFIDE----TDFVSLDEKSLYDEYKQYCQE 178 Query: 725 ELNYDRKRISTRTVTLNLKQK 745 Y S RT N+K Sbjct: 179 ---YGYMAASKRTFLANVKSL 196 >gi|123184615|ref|XP_001281143.1| hypothetical protein [Trichomonas vaginalis G3] gi|121835117|gb|EAX68213.1| hypothetical protein TVAG_513440 [Trichomonas vaginalis G3] Length = 194 Score = 54.9 bits (130), Expect = 6e-05, Method: Composition-based stats. Identities = 29/191 (15%), Positives = 54/191 (28%), Gaps = 23/191 (12%) Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620 + + +N+ +K + Y + + + N Sbjct: 6 CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESS 65 Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679 D RRY+V+ +D + L T + IP Sbjct: 66 D---RRYVVVR-TSDSHMQDTEYFDDLAETLTPNFYNHLFSYFMTLDISNFNPRQIPHT- 120 Query: 680 LKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIS 734 + ++ + + +ID +C D SL SY +Y ++ Y S Sbjct: 121 -EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDSYKQYCQE---YGYMAAS 168 Query: 735 TRTVTLNLKQK 745 RT N+K Sbjct: 169 KRTFLANVKNL 179 >gi|60682929|ref|YP_213073.1| hypothetical protein BF3469 [Bacteroides fragilis NCTC 9343] gi|60494363|emb|CAH09159.1| conserved hypothetical protein [Bacteroides fragilis NCTC 9343] Length = 719 Score = 54.9 bits (130), Expect = 6e-05, Method: Composition-based stats. Identities = 54/315 (17%), Positives = 101/315 (32%), Gaps = 40/315 (12%) Query: 349 DKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQS 408 +++ + + V D E + + KS N D+ + + + + + Sbjct: 323 EQVIDYLNKNYAFRRNTVLDRLEMCDLSQTEEKSFYAMRNKDFNSIFLNISRQGIAYPLN 382 Query: 409 LEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE 468 I S S + + + G K +I K T E + Sbjct: 383 SLKSVIDSDYSPEFNPFTHYF----------EGNARWDRKTDHIRKLADTIQAEDQEFWR 432 Query: 469 FLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 E + V AL G Q + + G G GKST + + Sbjct: 433 -----------EGFRRWIVAMVASALRPGKANQEALVLHGAQGKGKSTWIRHL------- 474 Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI-NAAKIKQMTGGDCM 587 R AN + L+ +R++I E E + + A++K++ G + + Sbjct: 475 ----LPPELAEYYRNGMIDPANKDDLLLLSTRLLINMEEFEGVKTGDIAELKRIIGQENV 530 Query: 588 TARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFD----KPIANRDASF 643 T R Y P + N F++ D RR++VIP + + + Sbjct: 531 TIRKVYDTQAQLYPRRASFIGSTNNMQFLK--DYGGNRRFLVIPVKTIDYRTPVDHKGVY 588 Query: 644 AQKLETKYTLEAKKW 658 AQ ++ + W Sbjct: 589 AQAVQLIE-DGFRYW 602 >gi|123296048|ref|XP_001290772.1| hypothetical protein [Trichomonas vaginalis G3] gi|121863837|gb|EAX77842.1| hypothetical protein TVAG_335360 [Trichomonas vaginalis G3] Length = 211 Score = 54.9 bits (130), Expect = 6e-05, Method: Composition-based stats. Identities = 32/205 (15%), Positives = 59/205 (28%), Gaps = 23/205 (11%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYRDQRVCENVANFV 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T Sbjct: 69 MVSNNVVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTPNFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSE 720 + IP + ++ + + +ID +C D SL Y + Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDEYKQ 174 Query: 721 YREQELNYDRKRISTRTVTLNLKQK 745 Y ++ Y S RT N+K Sbjct: 175 YCQE---YGYMAASKRTFLANVKNL 196 >gi|123241663|ref|XP_001288069.1| hypothetical protein [Trichomonas vaginalis G3] gi|121856640|gb|EAX75139.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 211 Score = 54.9 bits (130), Expect = 6e-05, Method: Composition-based stats. Identities = 30/201 (14%), Positives = 61/201 (30%), Gaps = 15/201 (7%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T + Sbjct: 69 MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724 + IP + ++ + + +ID+ + + + SL Y +Y ++ Sbjct: 125 DISKFNPRQIPYT--EERQTLLEANKSVYELFIDE----TDFVSLDERSLYDEYKQYCQE 178 Query: 725 ELNYDRKRISTRTVTLNLKQK 745 Y S RT N+K Sbjct: 179 ---YGYMTASKRTFLANVKNL 196 >gi|255066375|ref|ZP_05318230.1| conserved hypothetical protein [Neisseria sicca ATCC 29256] gi|255049255|gb|EET44719.1| conserved hypothetical protein [Neisseria sicca ATCC 29256] Length = 946 Score = 54.9 bits (130), Expect = 6e-05, Method: Composition-based stats. Identities = 34/297 (11%), Positives = 86/297 (28%), Gaps = 32/297 (10%) Query: 484 DYFTRCVGMALLG--GNKAQRFIHIRGVGGSGKSTLMNLI-KYAFGNQYVINAEASDIMQ 540 ++ + A + I G GKST + K FG + Q Sbjct: 615 EWVLNWLACRFRRPAEKPATALVFISETQGVGKSTFGEKVVKELFGEY------LRQLDQ 668 Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINA-AKIKQMTGGDCMTARLNYGNTYSE 599 N A+ + + + ++ +N K+K M D + + Sbjct: 669 NALESRFNASLLFALVT----IFEEISPSDERLNVIGKLKNMITSDVIMVERKGRDAEKH 724 Query: 600 SPASFTPFIVPNKH-LFVRNPDDAWWRRYIVIPFDKPIANRDAS-FAQKLETKYTLEAKK 657 + + ++ + + + D RR++V+ ++ ++ +++ E + Sbjct: 725 NDFNSFIIFSNDERSIPIESND----RRFMVLSCNRKYSDAQYEALQAEIDNGGVDEFAR 780 Query: 658 WFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTY-----QAWIDDCCDIG---ENLWE 709 + Y E ++ +A++DD + Sbjct: 781 FLYALPLMYSDGDTRRAFTPHTKPLTTEIKRRMINLNKPSWEAFLDDWWRGDLGLPFISC 840 Query: 710 ESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRII 766 + L +Y ++ + + + N+ ++ I + K R Sbjct: 841 AAGDLWSAYKKWCIDTKTFH---MQQKNFYANMAKR-LADLRSTVTIHGQPKKVRFF 893 >gi|123196889|ref|XP_001283654.1| hypothetical protein [Trichomonas vaginalis G3] gi|121843557|gb|EAX70724.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 211 Score = 54.9 bits (130), Expect = 6e-05, Method: Composition-based stats. Identities = 31/201 (15%), Positives = 61/201 (30%), Gaps = 15/201 (7%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T + Sbjct: 69 MVSNNTVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724 + IP + ++ + + +ID+ + + SL SY +Y ++ Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE 178 Query: 725 ELNYDRKRISTRTVTLNLKQK 745 Y S RT N+K Sbjct: 179 ---YGYMTASKRTFLANVKSL 196 >gi|123185719|ref|XP_001281374.1| hypothetical protein [Trichomonas vaginalis G3] gi|121835953|gb|EAX68444.1| hypothetical protein TVAG_546850 [Trichomonas vaginalis G3] Length = 211 Score = 54.9 bits (130), Expect = 6e-05, Method: Composition-based stats. Identities = 30/201 (14%), Positives = 60/201 (29%), Gaps = 15/201 (7%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T + Sbjct: 69 MVSNNTVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724 + IP + ++ + + +ID+ + + SL Y +Y ++ Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFECLDERSLYDEYKQYCQE 178 Query: 725 ELNYDRKRISTRTVTLNLKQK 745 Y S RT N+K Sbjct: 179 ---YGYMTASKRTFLANVKNL 196 >gi|311694870|gb|ADP97743.1| conserved hypothetical protein [marine bacterium HP15] Length = 527 Score = 54.9 bits (130), Expect = 6e-05, Method: Composition-based stats. Identities = 64/442 (14%), Positives = 127/442 (28%), Gaps = 56/442 (12%) Query: 312 NKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLT--LD--KITASIMNFLVSMKEDVF 367 +++ +Y + + YK+ + + M ++ + Sbjct: 49 ALQRYALIHGETKVYDSHQQKVYKQAGMKATMGNELFNAWMKHPNRRTMTWIEVNGQQQK 108 Query: 368 DLSEE--PEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSS 425 D S + + + D RRQ+V K+ + + ++D Sbjct: 109 DASNDPLMQIIERFVYIYPTKNAWDRRRQDVVPLEALKAYMPNDYTRWMEHPRRQVIDQD 168 Query: 426 SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP--------SQEFLDLVSGYF 477 + + D E I TG P V E + DL+ Sbjct: 169 -------NIVFDPTQQS----DTETTINTFTGIPLVPDEKAKAEKYRKCKGIFDLLCHLC 217 Query: 478 E-SEEVMDYFTRCVGMAL--LGGNKAQRFIHIRGVGGSGKSTLM-NLIKYAFGNQYVINA 533 ++ +D+ R + L +G + V GSGKS +++ +G I Sbjct: 218 NQDQDTIDWVVRWLAYPLQNVGAKLDTALLFHSDVHGSGKSLFFGEVMRMIYGRYAAILG 277 Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA-AKIKQMTGGDCMTARLN 592 + Q RL+ V + +++ N IK M G Sbjct: 278 QHQLESQ--------YTDWRSRLL--YAVFEEVLSRSEKHNQMGTIKHMITGQTQRIERK 327 Query: 593 YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYT 652 + + E+ F+ F P D RR++V+ P K+ + Sbjct: 328 FVTGWEEANHMNGVFLSNEIQPFPLEPSD---RRFLVV---WPKGTLSKELQDKVSYELD 381 Query: 653 LEAKKWFLKGVKAY-ISKGLDVDIP--EVCLKAKEEERQGTDTYQAWIDDC----CDIGE 705 F + + Y ++ P V + E ++ + D DI Sbjct: 382 NGGPAAFYQLLLDYPLADFTKHTKPLDTVARQRVIEFSLPN--FEVFFRDWKAGDLDI-P 438 Query: 706 NLWEESHSLAKSYSEYREQELN 727 + + Y + + N Sbjct: 439 FHSCTTRDVYLFYRRWCTETGN 460 >gi|123192730|ref|XP_001282658.1| hypothetical protein [Trichomonas vaginalis G3] gi|121840394|gb|EAX69728.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 211 Score = 54.5 bits (129), Expect = 6e-05, Method: Composition-based stats. Identities = 30/201 (14%), Positives = 61/201 (30%), Gaps = 15/201 (7%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELKSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T + Sbjct: 69 MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724 + IP + ++ + + +ID+ + + + SL Y +Y ++ Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFVSLDERSLYDEYKQYCQE 178 Query: 725 ELNYDRKRISTRTVTLNLKQK 745 Y S RT N+K Sbjct: 179 ---YGYMAASKRTFLANVKSL 196 >gi|89055389|ref|YP_510840.1| hypothetical protein Jann_2898 [Jannaschia sp. CCS1] gi|88864938|gb|ABD55815.1| hypothetical protein Jann_2898 [Jannaschia sp. CCS1] Length = 825 Score = 54.5 bits (129), Expect = 7e-05, Method: Composition-based stats. Identities = 44/304 (14%), Positives = 71/304 (23%), Gaps = 28/304 (9%) Query: 465 PSQEFLDLVSGYF--ESEEVMDYFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLMNLI 521 + E Y R + L A+ + RG G+GK + Sbjct: 498 DWSLMRAHIRDVLASGDEASDSYIIRWMAWTLQNPDEPAEVALTFRGEPGTGKGVFGRTM 557 Query: 522 KYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN-ENDEINAAKIKQ 580 FG + + I ++ E + D AK+K Sbjct: 558 AQLFGQHGLHTGGSEMITGRFNK----------HFRDCCLLFADEVVWDGDRKAEAKVKT 607 Query: 581 MTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD 640 + + P I N V + RRY V FD R Sbjct: 608 FLTEPTLMIEGKGVDA-VTWPNMLHVIISSNSEWVVPA--GPFERRYAV--FDVAATQRQ 662 Query: 641 ASFAQKLETKYT-LEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQG-TDTYQAWID 698 L + A A +++ D A + Sbjct: 663 KRGYFAPLFAELESGGLAAMLCDLLAMDLGRWHPREDVPKTDALNDQKSRGLDPVHAAVL 722 Query: 699 DCC-------DIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGI 751 D DI + + E R +++ V+ L + G Sbjct: 723 DMLREGALPSDISADARGTDARPFVATDELAAFVQRQSRAVVTSVVVSKLLDKIGGEKNR 782 Query: 752 KREK 755 KR Sbjct: 783 KRRP 786 >gi|154421598|ref|XP_001583812.1| hypothetical protein [Trichomonas vaginalis G3] gi|121918056|gb|EAY22826.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 211 Score = 54.5 bits (129), Expect = 7e-05, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 61/205 (29%), Gaps = 23/205 (11%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T + Sbjct: 69 MVSNNVVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSE 720 + IP + ++ + + +ID +C D SL SY + Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDSYKQ 174 Query: 721 YREQELNYDRKRISTRTVTLNLKQK 745 Y ++ Y S RT N+K Sbjct: 175 YCQE---YGYMAASKRTFLANVKSL 196 >gi|123346584|ref|XP_001295005.1| hypothetical protein [Trichomonas vaginalis G3] gi|121873490|gb|EAX82075.1| hypothetical protein TVAG_092290 [Trichomonas vaginalis G3] Length = 211 Score = 54.5 bits (129), Expect = 7e-05, Method: Composition-based stats. Identities = 30/201 (14%), Positives = 60/201 (29%), Gaps = 15/201 (7%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T + Sbjct: 69 MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724 + IP + ++ + + +ID+ + + SL Y +Y ++ Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFECLDERSLYDEYKQYCQE 178 Query: 725 ELNYDRKRISTRTVTLNLKQK 745 Y S RT N+K Sbjct: 179 ---YGYMAASKRTFLANVKSL 196 >gi|83719431|ref|YP_443632.1| hypothetical protein BTH_I3137 [Burkholderia thailandensis E264] gi|83653256|gb|ABC37319.1| hypothetical protein BTH_I3137 [Burkholderia thailandensis E264] Length = 647 Score = 54.5 bits (129), Expect = 7e-05, Method: Composition-based stats. Identities = 35/285 (12%), Positives = 71/285 (24%), Gaps = 39/285 (13%) Query: 5 QWKEQAKQAIHNGFKLIPLRLGDKR--PQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGE 62 QW + + +P + + + W ++ G G V Sbjct: 17 QWLLWQYEYDGKRWTKVPKQSNGRHASTKNPNTWTNFDQVRDEYQSGEFDGIGIVL---V 73 Query: 63 QPLYAFDIDS-KDEKTA-NTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120 L+ D D D + D V L F + + K Sbjct: 74 DGLFGIDFDHVLDADCNPEAWADDVLRQFPHTYVERSPSGDGLHLFGLGELVECGKAGPG 133 Query: 121 STQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEI 180 + D +YF T E+ + V + E+ ++ + Sbjct: 134 NRLECYDQKSP-RYFT------MTGHEFR-----SGYDVTEQQEGQSWLHEH---YYSQS 178 Query: 181 TVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNG---SHDEWIPVVMAVH 237 P+ + ++ + ++ F F++G H +A+ Sbjct: 179 AKPVDSNVVELVQRQGKVLTDDEIIERASHIGDGERFRNLFHDGHCFDHPSASEADLALC 238 Query: 238 H--------------ETRGSSKGKEIARRWSKQGSTYDEENFNYK 268 + R S +E G TY + + Sbjct: 239 NMFARFTRDADQIDGLFRRSGLYREKWDESHTAGQTYGQTTISKA 283 >gi|323445092|gb|EGB01888.1| hypothetical protein AURANDRAFT_69397 [Aureococcus anophagefferens] Length = 206 Score = 54.5 bits (129), Expect = 7e-05, Method: Composition-based stats. Identities = 34/187 (18%), Positives = 64/187 (34%), Gaps = 19/187 (10%) Query: 386 WFNTDYRRQNVEENSKAK----STAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETG 441 W +++ +N A S +I D R +G+L L Sbjct: 25 WNQAISLVEDMVKNGVASMNIGSIMLFSTTWFHHTINLSDCDDPPR---FNNGVLRLCDM 81 Query: 442 QKVK-PTKELYITKSTGTPFVEGEPSQEFLDLVSGYFES--------EEVMDYFTRCVGM 492 + +++++ S G + + S E +D+ + + ++ + Sbjct: 82 KFSDVGFDDVFLSWSCGYDYPQEPISDEIIDIFETWLDKYARAANETVDMKADIKTMIVE 141 Query: 493 ALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS 552 L N +R + G GG+GKS L NL+ G V + + EA NP Sbjct: 142 TLCDKNSKERAFFLMGEGGNGKSVLCNLLCNLLGEYAVNVPFETLT---KSIEAEGKNPF 198 Query: 553 LIRLMGS 559 + R+ Sbjct: 199 IKRMRYK 205 >gi|123194442|ref|XP_001283063.1| hypothetical protein [Trichomonas vaginalis G3] gi|121841701|gb|EAX70133.1| hypothetical protein TVAG_079930 [Trichomonas vaginalis G3] Length = 211 Score = 54.5 bits (129), Expect = 7e-05, Method: Composition-based stats. Identities = 32/205 (15%), Positives = 59/205 (28%), Gaps = 23/205 (11%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T Sbjct: 69 MVSNNVVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTPNFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSE 720 + IP + ++ + + +ID +C D SL Y + Sbjct: 125 DISKFNPRQIPYT--EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDEYKQ 174 Query: 721 YREQELNYDRKRISTRTVTLNLKQK 745 Y ++ Y S RT N+K Sbjct: 175 YCQE---YGYMTASKRTFLANVKSL 196 >gi|123293825|ref|XP_001290646.1| hypothetical protein [Trichomonas vaginalis G3] gi|121863516|gb|EAX77716.1| hypothetical protein TVAG_551210 [Trichomonas vaginalis G3] Length = 202 Score = 54.5 bits (129), Expect = 7e-05, Method: Composition-based stats. Identities = 29/201 (14%), Positives = 61/201 (30%), Gaps = 15/201 (7%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y ++ + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDSRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T + Sbjct: 69 MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDALSECLTSDFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724 + IP + ++ + + +I++ + + SL Y +Y ++ Sbjct: 125 DISNFNPRQIPHT--EERQTLLEANKSVYELFIEE----SDFECLDEKSLYDEYKQYCQE 178 Query: 725 ELNYDRKRISTRTVTLNLKQK 745 Y S RT N+K Sbjct: 179 ---YGYMPASKRTFLANVKSL 196 >gi|123490202|ref|XP_001325562.1| hypothetical protein [Trichomonas vaginalis G3] gi|121908463|gb|EAY13339.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 211 Score = 54.5 bits (129), Expect = 7e-05, Method: Composition-based stats. Identities = 30/201 (14%), Positives = 61/201 (30%), Gaps = 15/201 (7%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLLTDKVGVVERKYKDQRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T + Sbjct: 69 MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724 + IP + ++ + + +ID+ + + + SL Y +Y ++ Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFVSLDEKSLYDEYKQYCQE 178 Query: 725 ELNYDRKRISTRTVTLNLKQK 745 Y S RT N+K Sbjct: 179 ---YGYMAASKRTFLANVKSL 196 >gi|123205190|ref|XP_001284609.1| hypothetical protein [Trichomonas vaginalis G3] gi|121846485|gb|EAX71679.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 194 Score = 54.5 bits (129), Expect = 7e-05, Method: Composition-based stats. Identities = 27/187 (14%), Positives = 55/187 (29%), Gaps = 15/187 (8%) Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620 + + +N+ +K + Y + + + N Sbjct: 6 CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESS 65 Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679 D RRY+V+ +D + L T + IP Sbjct: 66 D---RRYVVVR-TSDSHMQDTEYFDDLAETLTPNFYNHLFSYFMTLDISKFNPRQIPYT- 120 Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738 + ++ + + +ID+ + + + SL SY +Y ++ Y S RT Sbjct: 121 -EERQTLLEANKSVYELFIDE----TDFVSLDERSLYDSYKQYCQE---YGYMTASKRTF 172 Query: 739 TLNLKQK 745 N+K Sbjct: 173 LANVKNL 179 >gi|70606445|ref|YP_255315.1| hypothetical protein Saci_0633 [Sulfolobus acidocaldarius DSM 639] gi|68567093|gb|AAY80022.1| hypothetical protein Saci_0633 [Sulfolobus acidocaldarius DSM 639] Length = 533 Score = 54.5 bits (129), Expect = 7e-05, Method: Composition-based stats. Identities = 32/240 (13%), Positives = 71/240 (29%), Gaps = 20/240 (8%) Query: 430 GEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRC 489 ++G+ G+ + + ++ + E + E L++ +D Sbjct: 216 PFKNGLYC--DGKLINNFRGIWTYH-LPYEYREISGN-EVEQLLNKLSGYYPNIDDVLNI 271 Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549 + + + ++ + + G GK L+ I +F G + Sbjct: 272 MALPFINRV-QRKVVILYGPPRGGKDYLIEKILMSF---------VKITSLRPEVVTGDS 321 Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609 L L R V I E A + ++GG M A E ++ Sbjct: 322 RFELCGLWNFRAVYIGEVEYIGSKLATFLDNLSGGVLMKAECKNKAP-IEMVFKGPVYLS 380 Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISK 669 N+ + + ++ R V+ F + L+ ++ +A K Sbjct: 381 ANRL-IIEDLPSGFYDRAEVVVFKNRF----NAPKYILDESEKEVLINILIRRAQALSEK 435 >gi|53747893|emb|CAF05638.1| hypothetical protein [Angiococcus disciformis] Length = 781 Score = 54.5 bits (129), Expect = 7e-05, Method: Composition-based stats. Identities = 54/451 (11%), Positives = 129/451 (28%), Gaps = 53/451 (11%) Query: 332 AWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDY 391 W+ + W TL + + + + + + E+ + + W + Sbjct: 346 VWFSTEHGIFKKWVGTLKRKKVCKPEVIDRLVQALPRV----ENRFEPRTWVQHWMEKNG 401 Query: 392 RRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSS--RFLGEQDGILDLETGQKVKPTKE 449 + + + I + + + + + E Q + E Sbjct: 402 VTFVYASDGFQIGGRMFPASEFLSQIEIESTNERTCISVRNLGNAVRLWEADQ-RRGIVE 460 Query: 450 LYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVM---DYFTRCVGMALLGG-NKAQRFIH 505 Y K ++EF+ +G + +++ + + V L G K Sbjct: 461 QYREKLKFREDGRRGDAEEFIRATTGRLDPVDLVVVLHFIWQ-VKRKLFGKPVKDHLMPI 519 Query: 506 IRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIIS 565 G GK+T + + G+ A+ + R L R G + Sbjct: 520 FVGKQRGGKTTAIKSLLQPLGDLVGFPADLQFLTDERQ------QFRLTRCYG---MFFD 570 Query: 566 ETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625 E + + + + +K + + R+ + T NK + Sbjct: 571 EMAKAERVASDVLKNRITAERIEYRVLGVQKLQTGTNNATFIGASNKQVK---------- 620 Query: 626 RYIVIPFDKPIANRDASFAQKLETKYTLEAKKWF----LKGVKAYISKGLDVDIP----- 676 IV+ D + ++ L W + + + S + P Sbjct: 621 -EIVV---------DPTGMRRFYQLDCLPQMNWTALEQIDFLAMWTSVDEKAESPLLGQL 670 Query: 677 EVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTR 736 ++E R D+ + + + C + W ++ +L Y E + + DR S Sbjct: 671 AQVQARQDEIRAK-DSVEDFFERRC-AQRDQWIKATALYGHYVEDLKYQGR-DRMAFSLT 727 Query: 737 TVTLNLKQKGFIGGIKREKIEKEWKSKRIIK 767 +K+ ++ + + + Sbjct: 728 KFGERMKELAGEENTGWKRSDGIKYRVTVKR 758 >gi|313896490|ref|ZP_07830041.1| primase C-terminal domain protein [Selenomonas sp. oral taxon 137 str. F0430] gi|312974914|gb|EFR40378.1| primase C-terminal domain protein [Selenomonas sp. oral taxon 137 str. F0430] Length = 669 Score = 54.5 bits (129), Expect = 7e-05, Method: Composition-based stats. Identities = 25/172 (14%), Positives = 44/172 (25%), Gaps = 24/172 (13%) Query: 222 YNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFE------ 275 WI V MA+ E S I WS++ Y KW+ F+ Sbjct: 15 AEVDRATWISVGMALKEEGYPCS----IWDDWSQRDPRYHPGECEKKWEGFNGTTTPVKG 70 Query: 276 -EIGDTAKKRSTF----------TSLFYHHGK--LIPKGLLASRFSDAYNKAMFSIYKKG 322 I AK+R ++ Y A + ++ Sbjct: 71 GTIVQLAKERGWMPCAEGAMAWDDTIEYDGNDGFNGFAPPDAWNPVQDLIDYLSLLFDVD 130 Query: 323 HFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPE 374 + W K + D+ ++ L D+ + + Sbjct: 131 DRVGYVTGDVW-KDSEGKWLPSKGVYDRTAGELIASLKKHANDIGATVGDWK 181 >gi|123334569|ref|XP_001294121.1| hypothetical protein [Trichomonas vaginalis G3] gi|121871733|gb|EAX81191.1| hypothetical protein TVAG_338300 [Trichomonas vaginalis G3] Length = 193 Score = 54.5 bits (129), Expect = 7e-05, Method: Composition-based stats. Identities = 29/191 (15%), Positives = 54/191 (28%), Gaps = 23/191 (12%) Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620 + + +N+ +K + Y + + + N Sbjct: 6 CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFVMVSNNAVPMKLESS 65 Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679 D RRY+V+ +D + L T + IP Sbjct: 66 D---RRYVVVR-TSDSHMQDTEYFDDLAETLTPNFYNHLFSYFMTLDISNFNPRQIPYT- 120 Query: 680 LKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIS 734 + ++ + + +ID +C D SL SY +Y ++ Y S Sbjct: 121 -EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDSYKQYCQE---YGYMAAS 168 Query: 735 TRTVTLNLKQK 745 RT N+K Sbjct: 169 KRTFLANVKNL 179 >gi|265766808|ref|ZP_06094637.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] gi|263253185|gb|EEZ24661.1| conserved hypothetical protein [Bacteroides sp. 2_1_16] Length = 719 Score = 54.5 bits (129), Expect = 7e-05, Method: Composition-based stats. Identities = 51/284 (17%), Positives = 92/284 (32%), Gaps = 35/284 (12%) Query: 349 DKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQS 408 +++ + + V D E + + KS N D+ + + + + + Sbjct: 323 EQVIDYLNKNYAFRRNTVLDRLEMCDLSQTEEKSFYAMRNKDFNSIFLNISRQGIAYPLN 382 Query: 409 LEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE 468 I S S + + + G K +I K T E + Sbjct: 383 SLKSVIDSDYSPEFNPFTHYF----------EGNARWDRKTDHIRKLADTIQAEDQEFWR 432 Query: 469 FLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 E + V AL G Q + + G G GKST + + Sbjct: 433 -----------EGFRRWIVAMVASALRPGKANQEALVLHGAQGKGKSTWIRHL------- 474 Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI-NAAKIKQMTGGDCM 587 R AN + L+ +R++I E E + + A++K++ G + + Sbjct: 475 ----LPPELAEYYRNGMIDPANKDDLLLLSTRLLINMEEFEGVKTGDIAELKRIIGQENV 530 Query: 588 TARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIP 631 T R Y P + N F++ D RR++VIP Sbjct: 531 TIRKVYDTQAQLYPRRASFIGSTNNMQFLK--DYGGNRRFLVIP 572 >gi|123204151|ref|XP_001284443.1| hypothetical protein [Trichomonas vaginalis G3] gi|121845953|gb|EAX71513.1| hypothetical protein TVAG_488810 [Trichomonas vaginalis G3] Length = 211 Score = 54.5 bits (129), Expect = 8e-05, Method: Composition-based stats. Identities = 30/201 (14%), Positives = 60/201 (29%), Gaps = 15/201 (7%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T + Sbjct: 69 MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724 + IP + ++ + + +ID+ + + SL Y +Y ++ Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFECLDERSLYDEYKQYCQE 178 Query: 725 ELNYDRKRISTRTVTLNLKQK 745 Y S RT N+K Sbjct: 179 ---YGYMAASKRTFLANVKSL 196 >gi|293402156|ref|ZP_06646294.1| RecA-family ATPase [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291304263|gb|EFE45514.1| RecA-family ATPase [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 735 Score = 54.5 bits (129), Expect = 8e-05, Method: Composition-based stats. Identities = 34/207 (16%), Positives = 67/207 (32%), Gaps = 28/207 (13%) Query: 225 SHDEWIPVVMAVHHETRGSSKGKEIARRWS-KQGSTYDEENFNYKWDTFDFEEIGDTAKK 283 + W+ V MA+ HE ++ WS K S Y ++ KWDTF I Sbjct: 20 DYQSWVNVGMALKHEGYSAAD----WDAWSMKDASRYHKDECFKKWDTFKGTGI------ 69 Query: 284 RSTFTSLFYHHGKLIPKGLLAS----RFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKN 339 T ++ + + + + D N + K W + + Sbjct: 70 PVTGGTIVQMAMDRGWQPMRSGGHELGWDDVINCDSDDL--------VILDKGWIEGKEI 121 Query: 340 NVYI-WSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR--QNV 396 I W K + + L E+V ++ + + K+ + W T + + Sbjct: 122 KEPIKWEPV--KELTTYLEILFDSDENVGYVTRSWDKDGKHMPTKGCWDRTAGQLIQELQ 179 Query: 397 EENSKAKSTAQSLEAGSIFSITSDLLD 423 + + + + + I + LD Sbjct: 180 KCDGDIGAVLGDYDPEAGAWIRFNPLD 206 >gi|237713494|ref|ZP_04543975.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262407279|ref|ZP_06083827.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|229446476|gb|EEO52267.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262354087|gb|EEZ03179.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] Length = 400 Score = 54.5 bits (129), Expect = 8e-05, Method: Composition-based stats. Identities = 33/209 (15%), Positives = 62/209 (29%), Gaps = 27/209 (12%) Query: 457 GTPFVEGE-PSQEFLDLVSGYFESE-EV-MDYFTRCVGMALLGGNKAQRFIHIRGVGGSG 513 + E + + L+ F + E+ MDY K + + +G Sbjct: 80 PIDHIPSEGEFPDIMKLIHHIFGEQYELGMDYMQLLYA---KPTQKLPILLLVSEERNTG 136 Query: 514 KSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI 573 K+T +N +K F + N Q G ++++ E Sbjct: 137 KTTFLNFLKAVFEDNVTFNTNEDFRSQFN-----------ADWAGKLLIVVDEVLLCRRE 185 Query: 574 NAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR---RYIVI 630 ++ ++K ++ G E + N LF D R R ++ Sbjct: 186 DSERLKNLSTAQTYKVEAK-GKDRQEVNFFAKFVLCSNNELFPVIIDTGETRYWVR-KIM 243 Query: 631 PFDKPIANRDASFAQKLETKYTLEAKKWF 659 P + D +F QKL + Sbjct: 244 PLES----DDTNFLQKL-KAQIPAFLYYL 267 >gi|123230867|ref|XP_001286182.1| hypothetical protein [Trichomonas vaginalis G3] gi|121851226|gb|EAX73252.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 211 Score = 54.5 bits (129), Expect = 8e-05, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 60/205 (29%), Gaps = 23/205 (11%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYRDQRVCENVANFV 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T Sbjct: 69 MVSNNVVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTPNFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSE 720 + IP + ++ + + +ID +C D SL SY + Sbjct: 125 DISKFNPRQIPYT--EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDSYKQ 174 Query: 721 YREQELNYDRKRISTRTVTLNLKQK 745 Y ++ Y S RT N+K Sbjct: 175 YCQE---YGYMAASKRTFLANVKNL 196 >gi|68304223|ref|YP_249691.1| helicase/P143 [Chrysodeixis chalcites nucleopolyhedrovirus] gi|67973052|gb|AAY84018.1| helicase/P143 [Chrysodeixis chalcites nucleopolyhedrovirus] Length = 1214 Score = 54.5 bits (129), Expect = 8e-05, Method: Composition-based stats. Identities = 53/463 (11%), Positives = 129/463 (27%), Gaps = 66/463 (14%) Query: 212 AFLSCFGEEFYNGSHDEWIPVVMAVHHE--------TRGSSKGKEIARRWSKQGSTYDEE 263 + L+ E ++ H E I + + + + + S ++ + + K+ Sbjct: 611 SALNDVFREIWHSDHSELITIGVYLRNTKLTDLMINLKCSECLEQKSAQQKKKCQCLMNI 670 Query: 264 NFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGH 323 N + I + S S+ L+ L + K + Sbjct: 671 EINSR-----AFRIALIMELFSKTRSIIELSWSLLYSTGLYFKVLKDNLKWSLKKNHENI 725 Query: 324 FLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSP 383 LY +++ I KI + + + E + ++ Sbjct: 726 LLY----NNLEFFNEHRESIIDYLYSKIDR---------IDFIDNFITELSSPDDFIETL 772 Query: 384 RFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITS-DLLDSSSRFLGEQDGILDLETGQ 442 + R + +N+ + + + S+ + +S + + + Sbjct: 773 KT--QVLSSRSCINQNNHDDNDDFADDNRINDSLKDVENEESKENLINFYNNYCNTWHIL 830 Query: 443 KVKPTKELYITKSTGTPFVEGEPSQEFLD--------------LVSGY---------FES 479 K + + + ++ V F + Sbjct: 831 KRWNLWWDKLIIRRPNDDLNSWLVRFYMRIFMTKLGLDEYNSTFVKQIVRGYLYFRGFTN 890 Query: 480 EEVMD-YFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537 ++ G ++ + + + I++ G GSGKS+ L++Y +++ Sbjct: 891 FNYINSLVMMHFGASMGIPSDYEKCCIYLNGKPGSGKSSFFELLEYIVVVH-KHDSDKYT 949 Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMT-GGDCMTARLNYGNT 596 + + E I + NE + + K + + Sbjct: 950 LSKKDTNEMEA---------DKMISQLYVINEMKVCDDSFFKSTADSTKSNSVCRKF-QG 999 Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR 639 + A++ IV NK L + + D R+ VI D Sbjct: 1000 SQKYEANYKLLIVNNKPLHISDYDKGVRNRFAVIYTDHLFEEN 1042 >gi|302385773|ref|YP_003821595.1| Primase 2 [Clostridium saccharolyticum WM1] gi|302196401|gb|ADL03972.1| Primase 2 [Clostridium saccharolyticum WM1] Length = 735 Score = 54.1 bits (128), Expect = 8e-05, Method: Composition-based stats. Identities = 24/174 (13%), Positives = 50/174 (28%), Gaps = 23/174 (13%) Query: 209 EITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYK 268 ++ L+ S+ +WI V MA+ HE ++ RWS Y K Sbjct: 6 DLMEVLNHIDPS--ELSYQDWINVGMALQHE----GYSVDVWDRWSMNDRRYHAGECEKK 59 Query: 269 WDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTA 328 W F T ++ + + +N + + Sbjct: 60 WRGFHGAGT------PVTGGTIVQYARDQGWTPPYDPGTALDWNDTISAE-------GII 106 Query: 329 DTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKS 382 K W + + ++ +L ++ E ++ + K+ K Sbjct: 107 VDKNWVE----EREVTEPRQWDPAGELIKYLETLFEAGENVGYVVKSWKKDEKY 156 >gi|123315433|ref|XP_001292097.1| hypothetical protein [Trichomonas vaginalis G3] gi|121867138|gb|EAX79167.1| hypothetical protein TVAG_053870 [Trichomonas vaginalis G3] Length = 194 Score = 54.1 bits (128), Expect = 8e-05, Method: Composition-based stats. Identities = 31/203 (15%), Positives = 57/203 (28%), Gaps = 23/203 (11%) Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620 + + +N+ +K + Y + + + N Sbjct: 6 CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNVVPMKLESS 65 Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679 D RRY+V+ +D + L T + IP Sbjct: 66 D---RRYVVVR-TSDSHMQDTEYFDDLAETLTPNFYNHLFSYFMTLDISNFNPRQIPHT- 120 Query: 680 LKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIS 734 + ++ + + +ID +C D SL SY +Y ++ Y S Sbjct: 121 -EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDSYKQYCQE---YGYMAAS 168 Query: 735 TRTVTLNLKQKGFIGGIKREKIE 757 RT N+K + K K Sbjct: 169 KRTFLANVKNLFDVRNGKYTKKN 191 >gi|123373458|ref|XP_001297621.1| hypothetical protein [Trichomonas vaginalis G3] gi|121877854|gb|EAX84691.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 211 Score = 54.1 bits (128), Expect = 8e-05, Method: Composition-based stats. Identities = 30/201 (14%), Positives = 62/201 (30%), Gaps = 15/201 (7%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T + Sbjct: 69 MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724 + IP + ++ + + ++D+ + + + SL SY +Y ++ Sbjct: 125 DISKFNPRQIPYT--EERQTLLEANKSVYELFVDE----TDFVSLDERSLYDSYKQYCQE 178 Query: 725 ELNYDRKRISTRTVTLNLKQK 745 Y S RT N+K Sbjct: 179 ---YGYMTASKRTFLANVKSL 196 >gi|123305703|ref|XP_001291277.1| hypothetical protein [Trichomonas vaginalis G3] gi|121865102|gb|EAX78347.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 211 Score = 54.1 bits (128), Expect = 8e-05, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 61/205 (29%), Gaps = 23/205 (11%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T + Sbjct: 69 MVSNNVVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSE 720 + IP + ++ + + +ID +C D SL SY + Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDSYKQ 174 Query: 721 YREQELNYDRKRISTRTVTLNLKQK 745 Y ++ Y S RT N+K Sbjct: 175 YCQE---YGYMAASKRTFLANVKSL 196 >gi|322691149|ref|YP_004220719.1| hypothetical protein BLLJ_0960 [Bifidobacterium longum subsp. longum JCM 1217] gi|320456005|dbj|BAJ66627.1| conserved hypothetical protein [Bifidobacterium longum subsp. longum JCM 1217] Length = 847 Score = 54.1 bits (128), Expect = 8e-05, Method: Composition-based stats. Identities = 37/204 (18%), Positives = 67/204 (32%), Gaps = 10/204 (4%) Query: 471 DLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529 ++ + + R + L + + +G GG+GKSTL + G+Q Sbjct: 262 WILDQWTGQDTDSTLNLQRSLAAPFL-RSHPECAYVYQGPGGTGKSTLAKDLMEHLGDQA 320 Query: 530 VINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGG-DCMT 588 + Q A L+ + + T+ E + +K + G + Sbjct: 321 TT-MSLDLLAQPTAMSAENKMGDLMSHLLALSDDYDPTHGRFEKSLPNLKTLLTGLLPFS 379 Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLE 648 AR N+ T I N HL V + +A RR+ IA++ L Sbjct: 380 ARRQGENSVDGM-PQSTHLITTNYHLPV-SSSEAEQRRFAF----STIASQTTRARHYLP 433 Query: 649 TKYTLEAKKWFLKGVKAYISKGLD 672 + + L G ++ G Sbjct: 434 FRRKHGFWPFMLVGAITWLKIGDR 457 >gi|123202812|ref|XP_001284175.1| hypothetical protein [Trichomonas vaginalis G3] gi|121845130|gb|EAX71245.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 211 Score = 54.1 bits (128), Expect = 8e-05, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 61/205 (29%), Gaps = 23/205 (11%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYRDQRVCENVANFV 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T + Sbjct: 69 MVSNNAVPMKLESSD---RRYVVVR-TSEAHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSE 720 + IP + ++ + + +ID +C D SL SY + Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDSYKQ 174 Query: 721 YREQELNYDRKRISTRTVTLNLKQK 745 Y ++ Y S RT N+K Sbjct: 175 YCQE---YGYMTASKRTFLANVKSL 196 >gi|123277263|ref|XP_001289978.1| hypothetical protein [Trichomonas vaginalis G3] gi|121861821|gb|EAX77048.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 211 Score = 54.1 bits (128), Expect = 9e-05, Method: Composition-based stats. Identities = 30/201 (14%), Positives = 61/201 (30%), Gaps = 15/201 (7%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T + Sbjct: 69 MVSNNVVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724 + IP + ++ + + +ID+ + + + SL Y +Y ++ Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFVSLDEKSLYDEYKQYCQE 178 Query: 725 ELNYDRKRISTRTVTLNLKQK 745 Y S RT N+K Sbjct: 179 ---YGYMAASKRTFLANVKSL 196 >gi|123305782|ref|XP_001291285.1| hypothetical protein [Trichomonas vaginalis G3] gi|121865115|gb|EAX78355.1| hypothetical protein TVAG_200420 [Trichomonas vaginalis G3] Length = 211 Score = 54.1 bits (128), Expect = 9e-05, Method: Composition-based stats. Identities = 28/201 (13%), Positives = 59/201 (29%), Gaps = 15/201 (7%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T + Sbjct: 69 MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724 + IP + ++ + + +I++ + + SL Y +Y ++ Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIEE----SDFECLDEKSLYDEYKQYCQE 178 Query: 725 ELNYDRKRISTRTVTLNLKQK 745 S RT N+K Sbjct: 179 SGYMAA---SKRTFLANVKSL 196 >gi|123153555|ref|XP_001277841.1| hypothetical protein [Trichomonas vaginalis G3] gi|121822832|gb|EAX64911.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 194 Score = 54.1 bits (128), Expect = 9e-05, Method: Composition-based stats. Identities = 29/191 (15%), Positives = 54/191 (28%), Gaps = 23/191 (12%) Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620 + + +N+ +K + Y + + + N Sbjct: 6 CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESS 65 Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679 D RRY+V+ +D + L T + IP Sbjct: 66 D---RRYVVVR-TSDSHMQDTEYFDDLAETLTPNFYNHLFSYFMTLDISKFNPRQIPHT- 120 Query: 680 LKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIS 734 + ++ + + +ID +C D SL SY +Y ++ Y S Sbjct: 121 -EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDSYKQYCQE---YGYMAAS 168 Query: 735 TRTVTLNLKQK 745 RT N+K Sbjct: 169 KRTFLANVKNL 179 >gi|283769256|ref|ZP_06342160.1| primase C-terminal 2 (PriCT-2) [Bulleidia extructa W1219] gi|283104232|gb|EFC05611.1| primase C-terminal 2 (PriCT-2) [Bulleidia extructa W1219] Length = 764 Score = 54.1 bits (128), Expect = 9e-05, Method: Composition-based stats. Identities = 24/145 (16%), Positives = 47/145 (32%), Gaps = 14/145 (9%) Query: 204 QYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGS-TYDE 262 + ++ L N + EW+ V MA+ +E ++ RWS Q + Y Sbjct: 2 ENRIEDLITALEYVDPRNLN--YQEWVNVGMALKYEGAY----VDVWDRWSSQDTERYHA 55 Query: 263 ENFNYKWDTFDFE-----EIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFS 317 KW++F + I A + ++ + K + L + + + Sbjct: 56 GECEKKWNSFTNDGITGNTIFKMASENGYISADYQPIIKGGARELFDGETVEFNYRVIDK 115 Query: 318 IYKKGHFLYTADTKAWYKKDKNNVY 342 L + K W + Y Sbjct: 116 SMMDYEKL--PEVKNWNPVEDIRKY 138 >gi|123508218|ref|XP_001329584.1| hypothetical protein [Trichomonas vaginalis G3] gi|121912630|gb|EAY17449.1| hypothetical protein TVAG_493910 [Trichomonas vaginalis G3] Length = 211 Score = 54.1 bits (128), Expect = 9e-05, Method: Composition-based stats. Identities = 32/205 (15%), Positives = 60/205 (29%), Gaps = 23/205 (11%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T + Sbjct: 69 MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSE 720 + IP + ++ + + +ID +C D SL Y + Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDEYKQ 174 Query: 721 YREQELNYDRKRISTRTVTLNLKQK 745 Y ++ Y S RT N+K Sbjct: 175 YCQE---YGYMTASKRTFLANVKNL 196 >gi|148261291|ref|YP_001235418.1| hypothetical protein Acry_2304 [Acidiphilium cryptum JF-5] gi|146402972|gb|ABQ31499.1| hypothetical protein Acry_2304 [Acidiphilium cryptum JF-5] Length = 158 Score = 54.1 bits (128), Expect = 9e-05, Method: Composition-based stats. Identities = 18/133 (13%), Positives = 34/133 (25%), Gaps = 11/133 (8%) Query: 8 EQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPAC----GFGFVCGVGEQ 63 + A G + P+ DK P+ I + G G Sbjct: 6 DTALDLAAAGRAVFPV-GNDKAPRCPRGHLAASTDPAVIRAMHRDFGFVLVGVATGERS- 63 Query: 64 PLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQ 123 + A DID+K + + + + F+ + + + Sbjct: 64 GIAALDIDNKPGGLDWFEAN--RDKLPATRTHRTRSGGLHLWFK---HRAGLRSSVSAIA 118 Query: 124 GHLDILGCGQYFV 136 +DI G Sbjct: 119 PGIDIRADGGSCA 131 >gi|331004614|ref|ZP_08328079.1| hypothetical protein HMPREF0491_02941 [Lachnospiraceae oral taxon 107 str. F0167] gi|330410483|gb|EGG89913.1| hypothetical protein HMPREF0491_02941 [Lachnospiraceae oral taxon 107 str. F0167] Length = 2541 Score = 54.1 bits (128), Expect = 9e-05, Method: Composition-based stats. Identities = 36/419 (8%), Positives = 94/419 (22%), Gaps = 36/419 (8%) Query: 19 KLIPLRLGDK--RPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEK 76 +P+ K + W + + K G GF G DID ++ Sbjct: 35 TKMPIMPNGKPAKSNDRKTWNSYKDCIDALCKNQGTGLGFFLG---DGYIGIDIDKVSDE 91 Query: 77 T---------ANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLD 127 A+ + + + + + G K +L+ Sbjct: 92 IMEYSMDFNAASMTANFLRGISTYAEISPSKTG-LHFI------GKGKVPGERKRYKNLE 144 Query: 128 ILGCGQYFVAYNIH---PKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPL 184 I ++F K + P + + + ++ Sbjct: 145 IYDRDRFFTITGNILKDKDRNKIVNINQELLPLYQKYMPKIDFGESKVGRINLSPSSLAD 204 Query: 185 VKDKKSIIPSKTWTNNNNRQYTNREITA-FLSCFGEEFYNGSHDEWIPVVMAVHHETRGS 243 N Y+ ++ + + F + S ++ + +++ Sbjct: 205 KSRFTQNDILNILFNRGYFNYSGEDLRQIYNGNYQNYFNSQSEADFFMLGRLLYYTADVE 264 Query: 244 SKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAK----KRSTFTSLFYHHGKLIP 299 + K+ Y + +K + + Sbjct: 265 ESISFMENSGLKRNKWYKRRGSADYIHYIADRAMNGISKFYDWNKEKANITKNAKQEETE 324 Query: 300 KGLLASRFSDAYNKAMFSIYKK--GHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMN 357 + + + I + K N Y +S S Sbjct: 325 NKKKEGKMPRYSTEKISDILSHSLEEIRRDVSAYKDFLKTMGNNYKYSYMHQLSIYSTYK 384 Query: 358 FLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFS 416 + E + + ++ K + + +Q++ G+ + Sbjct: 385 RATACAE-----YDFWKKLGRSVKRGEKGIPILDLSMRLPKVKYVFDVSQTVSIGNKIN 438 >gi|123422789|ref|XP_001306246.1| hypothetical protein [Trichomonas vaginalis G3] gi|121887809|gb|EAX93316.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 211 Score = 54.1 bits (128), Expect = 9e-05, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 61/205 (29%), Gaps = 23/205 (11%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFV 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T + Sbjct: 69 MVSNNVVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSE 720 + IP + ++ + + +ID +C D SL SY + Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDSYKQ 174 Query: 721 YREQELNYDRKRISTRTVTLNLKQK 745 Y ++ Y S RT N+K Sbjct: 175 YCQE---YGYMAASKRTFLANVKSL 196 >gi|284990051|ref|YP_003408605.1| bifunctional DNA primase/polymerase [Geodermatophilus obscurus DSM 43160] gi|284063296|gb|ADB74234.1| Bifunctional DNA primase/polymerase [Geodermatophilus obscurus DSM 43160] Length = 400 Score = 54.1 bits (128), Expect = 1e-04, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 44/150 (29%), Gaps = 19/150 (12%) Query: 6 WKEQAKQAIHNGFKLIPLRLGDKRP---QRLGKWE---EQLLSSEKIDKL----PACGFG 55 + A G ++IP+R G K W + E+I K P G Sbjct: 29 YLHNALFYAACGLRVIPVRPGTKASHSGLLGTGWSLEEKASNDPEQITKWWTDEPFANIG 88 Query: 56 FVCGVGEQPLYAFDIDSKDEK-----TANTFKDTFEILHGTPIVRIGQKPKILIPFRMNK 110 G Q D D K + A + + +VR + + + Sbjct: 89 IPQGRINQ-TGVIDHDRKHGERPRLQLAAHLRTVGVEVSRGIVVRT--PFGEHEWYLLPR 145 Query: 111 EGIKKKKTTESTQGHLDILGCGQYFVAYNI 140 G + T +D+ G Y +A Sbjct: 146 GG-QSGTTCHPYVPGVDLQLDGTYVLAPPS 174 >gi|83645646|ref|YP_434081.1| hypothetical protein HCH_02881 [Hahella chejuensis KCTC 2396] gi|83633689|gb|ABC29656.1| uncharacterized protein conserved in bacteria [Hahella chejuensis KCTC 2396] Length = 823 Score = 54.1 bits (128), Expect = 1e-04, Method: Composition-based stats. Identities = 45/327 (13%), Positives = 95/327 (29%), Gaps = 43/327 (13%) Query: 438 LETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYF----------- 486 L + + +I G P S+ + E++ + Sbjct: 465 LVFDPTMTADPKTHINIFEGLPHKPSPRSEFWRC--DSI---RELIKWLCNDDVDVVDWV 519 Query: 487 TRCVGMAL--LGGNKAQRFIHIRGVGGSGKST-LMNLIKYAFGNQYVINAEASDIMQNRP 543 + + + +G + V GSGKS ++ + +G + + Q Sbjct: 520 MKWLAYPIQNVGAKMDTALMFHSDVHGSGKSLLFADICRQLYGKYAAVLGQHQLESQ--- 576 Query: 544 PEAGKANPSLIRLMGSRIV-IISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602 RL+ + ++S + + IK M G + + + E+ Sbjct: 577 -----YTDWRDRLLFAVFEEVLSRDQKYAHL--GTIKHMITGKTQRIEKKFVSGWEEANH 629 Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKG 662 F+ F P D RR++V+ + + F Sbjct: 630 MNCIFLSNEFQPFPLEPSD---RRFLVVWPRATLPEHLQQLVSNEM--ENGGIEA-FYGY 683 Query: 663 VKAYISKGLDVDIPEVCLKAKEEE----RQGTDTYQAWIDDCCDIGENLWEESHSLAKSY 718 + AY +KG + + K GT+ + D + + L + Y Sbjct: 684 LLAYNTKGFNEHTKPLMTDDKARLIHFGLSGTELFYQAWRDGLLEAPYMSCITTDLYEVY 743 Query: 719 SEYREQELNYDRKRISTRTVTLNLKQK 745 + +E + ++ +L L K Sbjct: 744 KRWCSREGE---RSLTQTKFSLLLSVK 767 >gi|124001159|ref|XP_001277000.1| hypothetical protein [Trichomonas vaginalis G3] gi|121918986|gb|EAY23752.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 211 Score = 54.1 bits (128), Expect = 1e-04, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 61/205 (29%), Gaps = 23/205 (11%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T + Sbjct: 69 MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSE 720 + IP + ++ + + +ID +C D SL SY + Sbjct: 125 DISKFNPRQIPYT--EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDSYKQ 174 Query: 721 YREQELNYDRKRISTRTVTLNLKQK 745 Y ++ Y S RT N+K Sbjct: 175 YCQE---YGYMAASKRTFLANVKSL 196 >gi|160887901|ref|ZP_02068904.1| hypothetical protein BACUNI_00305 [Bacteroides uniformis ATCC 8492] gi|218131379|ref|ZP_03460183.1| hypothetical protein BACEGG_02994 [Bacteroides eggerthii DSM 20697] gi|237717336|ref|ZP_04547817.1| conserved hypothetical protein [Bacteroides sp. D1] gi|237724860|ref|ZP_04555341.1| conserved hypothetical protein [Bacteroides sp. D4] gi|262406101|ref|ZP_06082651.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|270294842|ref|ZP_06201043.1| conserved hypothetical protein [Bacteroides sp. D20] gi|294778044|ref|ZP_06743478.1| conserved hypothetical protein [Bacteroides vulgatus PC510] gi|156862587|gb|EDO56018.1| hypothetical protein BACUNI_00305 [Bacteroides uniformis ATCC 8492] gi|217986311|gb|EEC52648.1| hypothetical protein BACEGG_02994 [Bacteroides eggerthii DSM 20697] gi|229436598|gb|EEO46675.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4] gi|229443319|gb|EEO49110.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262356976|gb|EEZ06066.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|270274089|gb|EFA19950.1| conserved hypothetical protein [Bacteroides sp. D20] gi|294448102|gb|EFG16668.1| conserved hypothetical protein [Bacteroides vulgatus PC510] Length = 396 Score = 54.1 bits (128), Expect = 1e-04, Method: Composition-based stats. Identities = 41/308 (13%), Positives = 87/308 (28%), Gaps = 51/308 (16%) Query: 357 NFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFS 416 + + ++ + +P N K W N + K+ ++ F Sbjct: 4 EEYMRVGTTLYKVVNQPCANGGYEKKRVVWNN------STLRQDYGKNYLATVPKYDGFC 57 Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY 476 + L+ G + + ++ + L+ Sbjct: 58 TVPNHLNYQKEIEGFLN------LYEPIEHKPQQGDFS-------------HIQSLMRHI 98 Query: 477 FESE-EV-MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534 F + E+ MDY L K + + +GKST +N +K F V Sbjct: 99 FGEQYELGMDYMQLLY---LQPTQKLPIVLLVSEERNTGKSTFLNFLKAVF-ENNVTFNT 154 Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594 D + G ++++ E N ++ ++K ++ G Sbjct: 155 NEDFRSQFNSDWA----------GKLLIVVDEVLLNRREDSERLKNLSTTFTYKVEAK-G 203 Query: 595 NTYSESPASFTPFIVPNK--HLFVRNPDDA-WWRRYIVIPFDKPIANRDASFAQKLETKY 651 +E + N + + + +W R ++P D +F QKL Sbjct: 204 KDRTEIAFFAKFVLCSNNEYLPILIDAGETRYWVR-KIMPLQS----DDTNFLQKL-KAE 257 Query: 652 TLEAKKWF 659 + Sbjct: 258 IPAFLYFL 265 >gi|123497113|ref|XP_001327106.1| hypothetical protein [Trichomonas vaginalis G3] gi|121910031|gb|EAY14883.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 211 Score = 54.1 bits (128), Expect = 1e-04, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 61/205 (29%), Gaps = 23/205 (11%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T + Sbjct: 69 MVSNNVVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSE 720 + IP + ++ + + +ID +C D SL SY + Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDSYKQ 174 Query: 721 YREQELNYDRKRISTRTVTLNLKQK 745 Y ++ Y S RT N+K Sbjct: 175 YCQE---YGYMAASKRTFLANVKSL 196 >gi|123177581|ref|XP_001280125.1| hypothetical protein [Trichomonas vaginalis G3] gi|121831445|gb|EAX67195.1| hypothetical protein TVAG_590280 [Trichomonas vaginalis G3] Length = 211 Score = 54.1 bits (128), Expect = 1e-04, Method: Composition-based stats. Identities = 32/205 (15%), Positives = 60/205 (29%), Gaps = 23/205 (11%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T + Sbjct: 69 MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSE 720 + IP + ++ + + +ID +C D SL Y + Sbjct: 125 DISKFNPRQIPYT--EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDEYKQ 174 Query: 721 YREQELNYDRKRISTRTVTLNLKQK 745 Y ++ Y S RT N+K Sbjct: 175 YCQE---YGYMAASKRTFLANVKNL 196 >gi|322382459|ref|ZP_08056354.1| hypothetical protein PL1_2398 [Paenibacillus larvae subsp. larvae B-3650] gi|321153572|gb|EFX45961.1| hypothetical protein PL1_2398 [Paenibacillus larvae subsp. larvae B-3650] Length = 775 Score = 54.1 bits (128), Expect = 1e-04, Method: Composition-based stats. Identities = 46/287 (16%), Positives = 86/287 (29%), Gaps = 36/287 (12%) Query: 496 GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIR 555 G K + + G G+GKST+ I+ + + + D + Sbjct: 513 PGCKFDYMLVLVGAQGAGKSTI---IQKLAMRWFSDSLKTFDTKEAGEHLQSAWIFEFGE 569 Query: 556 LMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLF 615 L G + +IKQ R+ Y ++ P F N F Sbjct: 570 LAGMTKAEVD-----------EIKQFITKRSDKYRVAYDRVITDFPRKCVFFGSTNNWDF 618 Query: 616 VRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDI 675 +++P RR+ + R + + L + L+ + G + + Sbjct: 619 LKDPTG--NRRFWPV--SVKPERRTKNVFEDLTEHEIGQIWAEALQAYRR----GERITL 670 Query: 676 PEVCLKA---KEEERQGTDT----YQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNY 728 K +E D Q W+D ++ W E +Y E Sbjct: 671 SPEVEKEAPGIQESHMEEDPRFGIIQEWLD---SPAQDEWAEEP----TYRERVCATQIL 723 Query: 729 DRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAF 775 + T + K + ++R +E K + I G ++ F Sbjct: 724 TECLGHRKGTTRPWESKEIVNIMRRMPGWEEAKGRIRIPGYGIQTTF 770 >gi|301165045|emb|CBW24613.1| conserved hypothetical protein [Bacteroides fragilis 638R] Length = 396 Score = 53.7 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 41/308 (13%), Positives = 87/308 (28%), Gaps = 51/308 (16%) Query: 357 NFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFS 416 + + ++ + +P N K W N + K+ ++ F Sbjct: 4 EEYMRVGTTLYKVVNQPCANGGYEKKRVVWNN------STLRQDYGKNYLATVPKYDGFC 57 Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY 476 + L+ G + + ++ + L+ Sbjct: 58 TVPNHLNYQKEIEGFLN------LYEPIEHKPQQGDFS-------------HIQSLMRHI 98 Query: 477 FESE-EV-MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534 F + E+ MDY L K + + +GKST +N +K F V Sbjct: 99 FGEQYELGMDYMQLLY---LQPTQKLPIVLLVSEERNTGKSTFLNFLKAVF-ENNVTFNT 154 Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594 D + G ++++ E N ++ ++K ++ G Sbjct: 155 NEDFRSQFNSDWA----------GKLLIVVDEVLLNRREDSERLKNLSTTFTYKVEAK-G 203 Query: 595 NTYSESPASFTPFIVPNK--HLFVRNPDDA-WWRRYIVIPFDKPIANRDASFAQKLETKY 651 +E + N + + + +W R ++P D +F QKL Sbjct: 204 KDRTEIAFFAKFVLCSNNEYLPILIDVGETRYWVR-KIMPLQS----DDTNFLQKL-KAE 257 Query: 652 TLEAKKWF 659 + Sbjct: 258 IPAFLYFL 265 >gi|123327782|ref|XP_001293717.1| hypothetical protein [Trichomonas vaginalis G3] gi|121870864|gb|EAX80787.1| hypothetical protein TVAG_356970 [Trichomonas vaginalis G3] Length = 211 Score = 53.7 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 32/205 (15%), Positives = 60/205 (29%), Gaps = 23/205 (11%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T + Sbjct: 69 MVSNNTVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSE 720 + IP + ++ + + +ID +C D SL Y + Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDEYKQ 174 Query: 721 YREQELNYDRKRISTRTVTLNLKQK 745 Y ++ Y S RT N+K Sbjct: 175 YCQE---YGYMTASKRTFLANVKSL 196 >gi|123229254|ref|XP_001286066.1| hypothetical protein [Trichomonas vaginalis G3] gi|121850866|gb|EAX73136.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 211 Score = 53.7 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 61/205 (29%), Gaps = 23/205 (11%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFV 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T + Sbjct: 69 MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSE 720 + IP + ++ + + +ID +C D SL SY + Sbjct: 125 DISKFNPRQIPYT--EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDSYKQ 174 Query: 721 YREQELNYDRKRISTRTVTLNLKQK 745 Y ++ Y S RT N+K Sbjct: 175 YCQE---YGYMAASKRTFLANVKSL 196 >gi|123300596|ref|XP_001291020.1| hypothetical protein [Trichomonas vaginalis G3] gi|121864457|gb|EAX78090.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 211 Score = 53.7 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 32/205 (15%), Positives = 59/205 (28%), Gaps = 23/205 (11%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + + + +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLKSDALKSLITDKVGVVERKYKDQRVCENVANFV 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T Sbjct: 69 MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTPNFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSE 720 + IP + ++ + + +ID +C D SL SY + Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDSYKQ 174 Query: 721 YREQELNYDRKRISTRTVTLNLKQK 745 Y ++ Y S RT N+K Sbjct: 175 YCQE---YGYMTASKRTFLANVKNL 196 >gi|224541910|ref|ZP_03682449.1| hypothetical protein CATMIT_01083 [Catenibacterium mitsuokai DSM 15897] gi|224525144|gb|EEF94249.1| hypothetical protein CATMIT_01083 [Catenibacterium mitsuokai DSM 15897] Length = 748 Score = 53.7 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 26/122 (21%), Positives = 39/122 (31%), Gaps = 9/122 (7%) Query: 225 SHDEWIPVVMAVHHETRGSSKGKEIARRWSKQ-GSTYDEENFNYKWDTFDFEEIGDTAKK 283 S+ EW V MA+ HE +S WS Q Y KW++F+ E GD Sbjct: 19 SYQEWTNVGMALKHEGYEASD----WDSWSSQDSERYKRGECFTKWNSFN-ETAGDIVTG 73 Query: 284 RSTFTSLF---YHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNN 340 + F + K I + D + L+ W ++ Sbjct: 74 GTIFDYAKKGGFVPPKKIDPNEGVLDWDDEIGNIIDKDSIDSIELHEPSDSIWNPANELI 133 Query: 341 VY 342 Y Sbjct: 134 RY 135 >gi|298385938|ref|ZP_06995495.1| conserved hypothetical protein [Bacteroides sp. 1_1_14] gi|298261166|gb|EFI04033.1| conserved hypothetical protein [Bacteroides sp. 1_1_14] Length = 405 Score = 53.7 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 33/260 (12%), Positives = 75/260 (28%), Gaps = 20/260 (7%) Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGE-PSQEFLDLVSGYFESEE 481 D+ + +G + + + + V E + L+ F EE Sbjct: 52 DNIPPIIKY-NGFCTVPSHTNYQKEIAGFYNLYEPIDHVPEEGDFPDIEKLLHHIF--EE 108 Query: 482 VMDYFTRCVGMALLGGNKAQRFIHIRGVGGS-GKSTLMNLIKYAFGNQYVINAEASDIMQ 540 + + + + + + + GK+T +N +K F + N Q Sbjct: 109 QYELGLDYMQLLYTQPTQKLPILLLVSEERNTGKTTFLNFLKSIFQDNATFNTNEDFRSQ 168 Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES 600 G ++++ E + ++ ++K ++ G E Sbjct: 169 FN-----------ADWAGKLLIVVDEVLLSRREDSERLKNLSTAQTYKVEAK-GKDRQEV 216 Query: 601 PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFL 660 + N L+ D R + +P+ + D +F KL + Sbjct: 217 NFFAKFVLCSNNELYPVIIDPGENR--YWVRKIRPLESDDTNFLLKL-KEQIPAFLYHLQ 273 Query: 661 KGVKAYISKGLDVDIPEVCL 680 + I +G P + Sbjct: 274 HRPLSTIKEGRMWFNPALIR 293 >gi|123446973|ref|XP_001312232.1| hypothetical protein [Trichomonas vaginalis G3] gi|121894072|gb|EAX99302.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 211 Score = 53.7 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 29/201 (14%), Positives = 61/201 (30%), Gaps = 15/201 (7%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T + Sbjct: 69 MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724 + IP + ++ + + ++D+ + + + SL Y +Y ++ Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFVDE----TDFVSLDEKSLYNEYKQYCQE 178 Query: 725 ELNYDRKRISTRTVTLNLKQK 745 Y S RT N+K Sbjct: 179 ---YGYMAASKRTFLANVKSL 196 >gi|123145716|ref|XP_001277556.1| hypothetical protein [Trichomonas vaginalis G3] gi|121821724|gb|EAX64626.1| hypothetical protein TVAG_602970 [Trichomonas vaginalis G3] Length = 211 Score = 53.7 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 32/205 (15%), Positives = 60/205 (29%), Gaps = 23/205 (11%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T + Sbjct: 69 MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSE 720 + IP + ++ + + +ID +C D SL Y + Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDEYKQ 174 Query: 721 YREQELNYDRKRISTRTVTLNLKQK 745 Y ++ Y S RT N+K Sbjct: 175 YCQE---YGYMTASKRTFLANVKSL 196 >gi|123418305|ref|XP_001305293.1| hypothetical protein [Trichomonas vaginalis G3] gi|121886804|gb|EAX92363.1| hypothetical protein TVAG_215890 [Trichomonas vaginalis G3] Length = 194 Score = 53.7 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 28/191 (14%), Positives = 53/191 (27%), Gaps = 23/191 (12%) Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620 + + +N+ +K + Y + + + N Sbjct: 6 CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESS 65 Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679 D RRY+V+ +D + L T + IP Sbjct: 66 D---RRYVVVR-TSEAHMQDTEYFDDLAETLTPNFYNHLFSYFMTLDISKFNPRQIPYT- 120 Query: 680 LKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIS 734 + ++ + + +ID +C D SL Y +Y ++ Y S Sbjct: 121 -EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDEYKQYCQE---YGYMAAS 168 Query: 735 TRTVTLNLKQK 745 RT N+K Sbjct: 169 KRTFLANVKNL 179 >gi|92117681|ref|YP_577410.1| virulence-associated E [Nitrobacter hamburgensis X14] gi|91800575|gb|ABE62950.1| virulence-associated E [Nitrobacter hamburgensis X14] Length = 695 Score = 53.7 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 86/673 (12%), Positives = 161/673 (23%), Gaps = 117/673 (17%) Query: 17 GFKLIPLRLGDKRPQRLGK--WEEQLLSSEKIDKL----PACGFGFVCGVGEQPLYAFDI 70 G L P+ G K P + + + + P C F V G L DI Sbjct: 16 GAALAPIPHGAKNPLGIVGSVYLDCSKDPAQWRGWRATHPNCNFVLVAGP--SRLIILDI 73 Query: 71 DSKDE--KTANTFKDTFEILHGTPI----VRIGQKPKILIPFRMNKEGIKKKKTTESTQG 124 D K+ A + PI VR R+ + T Sbjct: 74 DVKELGVDRAIHLYRWWFESRRLPILMPQVRTP-SGGFHTYVRVPDGVDLEDLTAAQLVP 132 Query: 125 HLDILGCGQYFVAY----NIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEI 180 + G + V I Y + E E L + + Sbjct: 133 ACE--GAKKAIVETKIGNGITNAVGSYYDGRDGGPAGYYKRIT--PYEPHECLPQLLEYY 188 Query: 181 TVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHET 240 +V + ++ I L C + A+ Sbjct: 189 KRKVVATAATPESTRAAEELLP--TLPAHIRRKLDCEDATGDRS--ADIARCTTALIGHG 244 Query: 241 RGSSKGKEIARRWS------KQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHH 294 ++ ++ WS + D + + G+ S Sbjct: 245 CSDAEIFDL--IWSHPLGEKAREKKDDGHWLRKDITSMRSKGFGERKPVDW---SGVAMT 299 Query: 295 GKLIPKGLLASRFSD----AYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDK 350 G + + N + TA + + ++ Sbjct: 300 GAKTGDIVSRPDWHHQCIADGNGKIIPNVANAIVAVTAASGSHIGFNE------------ 347 Query: 351 ITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLE 410 +L + D + ++ ++ + + ++ + Sbjct: 348 -MECAPFWLAPYNRAIRD--------EEVTEIQKWIQHNG--IPRIGKDIVHDAVRSVAV 396 Query: 411 AGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFL 470 S + D L++ G +T TP+ G Sbjct: 397 KNSFHPVR-DYLNALRW------------DGVPRAGNWLSTYLGATRTPYTNG------- 436 Query: 471 DLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530 + F V F G KA + + G G KS + + G + Sbjct: 437 --IGQMFLIAMVARAFQ--------PGCKADYMLILEGKQGLMKS---SACRALAGQWFS 483 Query: 531 INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR 590 + L G ++ +E + +K R Sbjct: 484 DQLP-----------DIGTKDAAQHLRGKWLIEAAEMHALSRAETTALKAFVTRQEERYR 532 Query: 591 LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF-----DKPIANRDASFAQ 645 YG P NK +++++ RR+ + D+ A+RD FA+ Sbjct: 533 PPYGRLEVVEPRQCVFIGTTNKAVYLKDETGG--RRFWPVKCGTIAIDRLAADRDQLFAE 590 Query: 646 KLETKYTLEAKKW 658 + Y A W Sbjct: 591 AVHL-YRSGAAWW 602 >gi|123316920|ref|XP_001292494.1| hypothetical protein [Trichomonas vaginalis G3] gi|121868086|gb|EAX79564.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 211 Score = 53.7 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 30/201 (14%), Positives = 60/201 (29%), Gaps = 15/201 (7%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S + + + +N+ +K + Y + + Sbjct: 9 GKFNSSTENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T + Sbjct: 69 MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724 + IP + ++ + + +ID+ + + + SL Y +Y ++ Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFVSLDERSLYDEYKQYCQE 178 Query: 725 ELNYDRKRISTRTVTLNLKQK 745 Y S RT N+K Sbjct: 179 ---YGYMAASKRTFLANVKSL 196 >gi|123286063|ref|XP_001290255.1| hypothetical protein [Trichomonas vaginalis G3] gi|121862495|gb|EAX77325.1| hypothetical protein TVAG_032380 [Trichomonas vaginalis G3] Length = 211 Score = 53.7 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 30/201 (14%), Positives = 59/201 (29%), Gaps = 15/201 (7%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYRDQRVCENVANFV 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T Sbjct: 69 MVSNNVVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTPNFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724 + IP + ++ + + +ID+ + + SL Y +Y ++ Sbjct: 125 DISKFNPRQIPYT--EERQTLLEANKSVYELFIDE----TDFECLDERSLYDEYKQYCQE 178 Query: 725 ELNYDRKRISTRTVTLNLKQK 745 Y S RT N+K Sbjct: 179 ---YGYMAASKRTFLANVKSL 196 >gi|325128008|gb|EGC50906.1| hypothetical protein NMXN1568_1216 [Neisseria meningitidis N1568] Length = 815 Score = 53.7 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 68/514 (13%), Positives = 121/514 (23%), Gaps = 108/514 (21%) Query: 283 KRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVY 342 + + + + +R Y + K D + + Sbjct: 320 GKDVVDAWYEWGRAPVLTMYEINRLKKDYA--LIQAVKDDDT---QDMMERFIYLDGSAS 374 Query: 343 IWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKA 402 IW L ++ L + P K F + Sbjct: 375 IWDNKLWRVVPEKAARLSMTPDGFKIWVNSPSRIVKRFDRLVFEPGRVLSDDYINIFRGM 434 Query: 403 KSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVE 462 + T+ L + Sbjct: 435 PIEPKFPIPKEDMPETNYEL-------------------------------------YRL 457 Query: 463 GEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLG-GNKAQRFIHIRGV-GGSGKSTLMN 519 + L+L++ + ++Y + L G K + + G G+GKS Sbjct: 458 FPEIKPILNLINHLCNGDYQQVEYILNWLAYPLQNVGAKMTTAVVMHGHIHGAGKSFFFE 517 Query: 520 LIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIIS--ETNENDEINAAK 577 I +Y D+ N G I TN+ Sbjct: 518 EIVKPMYGEYGATYGQEDLESNYTANRS----------GKMFGIFEEVYTNQQKYNKTGS 567 Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHL-FVRNPDDAWWRRYIVIPFDKPI 636 K M G M + + Y E+ F+ H + D RRY V+ +K + Sbjct: 568 QKHMITGKTMRVERKFQDAYEEANHMNCVFLSNESHPFKIEEND----RRYFVVWPEKKL 623 Query: 637 ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKG--------------------LDVDIP 676 + + FL Y++ G D + P Sbjct: 624 DKKLRDEVLDCIGNDGVRLFYSFLLCWNFYLTYGQQGAENEKGYEVIKLEEPVRFDPNTP 683 Query: 677 EVCLKAKE--------EERQGTDTYQAW----IDD---CCDIGENLWEESHSLAKSYSEY 721 AK+ + Y W I D CC I ++LW Y E+ Sbjct: 684 PPMTAAKQNVISYGRYAWQT---FYSEWAGGGIKDLPFCCCITDDLWL-------VYKEW 733 Query: 722 REQELNYDR-KRISTRTVTLNLKQKGFIGGIKRE 754 Q + K + + + + K + Sbjct: 734 CRQNGERETGKTKFLQHIAEKMPRARRWWRTKNK 767 >gi|294788388|ref|ZP_06753631.1| conserved hypothetical protein [Simonsiella muelleri ATCC 29453] gi|294483819|gb|EFG31503.1| conserved hypothetical protein [Simonsiella muelleri ATCC 29453] Length = 906 Score = 53.7 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 57/526 (10%), Positives = 125/526 (23%), Gaps = 76/526 (14%) Query: 149 TWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNR 208 PL + ++ + +E+ + IP Sbjct: 259 EKEAGVKETDKPLLPLHEQGGMKAMLGIEKELLKYGNQTAIVAIPEPDVWTAGYDIA--D 316 Query: 209 EITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYK 268 IT + + + + F Sbjct: 317 MITDLEPLANARELVDEALTRVSPEPTLQGVSHSVKNAPNVQTGGVGDDDNVYNSYFAEL 376 Query: 269 WDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTA 328 F E +A + T+ Y K+ + + + +K + + Y+ Sbjct: 377 LAHFALVEGKKSAVDKRNGTTYSYSALKVRFNKDVVDSWFNMPDKPLMTQYEIKRLKDIE 436 Query: 329 DTKAW------------YKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDN 376 + K Y + +W L ++ L Sbjct: 437 ELKQRSNDTEILETMERYIYLDGSTSVWDKQLWRMIEQGAAKLAM--------------- 481 Query: 377 NKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGI- 435 S + W N+ R+ +N LD ++ G+ Sbjct: 482 ---GDSFKIWVNSPNRKVIPIDNIVFNPM---------------TLDLGDDYINLFRGLP 523 Query: 436 LDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVM-DYFTRCVGMAL 494 + + + + + P LV ++ ++ + + L Sbjct: 524 VTASYPIPREEMPQNWGEVISLFP-----ECMNIFRLVKHLCNNDWLITQFVMNWLAYPL 578 Query: 495 LG-GNKAQRFIHIRGV-GGSGKSTLM-NLIKYAFGNQYVINAEASDIMQNRPPEAGKANP 551 G K + G G+GKS L +++ +G + + Sbjct: 579 QHLGAKLACSLVFHGDVQGAGKSWLFDDIMGQIYGEHGGHYGQEDLETIYTANRS----- 633 Query: 552 SLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPN 611 +L G+ + + + N+ KIK M + + E+ F Sbjct: 634 --AKLYGAFEEVFNNQQKYS--NSGKIKNMVTRKTHRIERKFVDAMDEANRINCVFTSNE 689 Query: 612 KHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKK 657 + + +D RR V+ + L+ E Sbjct: 690 AQPYKLDEND---RRACVV-------SPQKRLPDDLKQALEEEIAN 725 >gi|123185483|ref|XP_001281331.1| hypothetical protein [Trichomonas vaginalis G3] gi|121835789|gb|EAX68401.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 194 Score = 53.7 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 29/191 (15%), Positives = 54/191 (28%), Gaps = 23/191 (12%) Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620 + + +N+ +K + Y + + + N Sbjct: 6 CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESS 65 Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679 D RRY+V+ +D + L T + IP Sbjct: 66 D---RRYVVVR-TSDSHMQDTEYFDDLAETLTPNFYNHLFSYFMTLDISKFNPRQIPHT- 120 Query: 680 LKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIS 734 + ++ + + +ID +C D SL SY +Y ++ Y S Sbjct: 121 -EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDSYKQYCQE---YGYMAAS 168 Query: 735 TRTVTLNLKQK 745 RT N+K Sbjct: 169 KRTFLANVKSL 179 >gi|262383670|ref|ZP_06076806.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|262294568|gb|EEY82500.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] Length = 395 Score = 53.7 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 36/236 (15%), Positives = 71/236 (30%), Gaps = 25/236 (10%) Query: 429 LGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGE-PSQEFLDLVSGYFESE-EV-MDY 485 + + DG + KP ++ E LV F + + MDY Sbjct: 51 IPKYDGFCTVPDHVGYKPVVGKFLNLYEPISHRPQEGDFPCIRSLVEHIFGEQYGLGMDY 110 Query: 486 FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545 L K + + +GKST +N +K F N + ++ + Sbjct: 111 LQLLY---LYPIQKLPILLLVSEERNTGKSTFLNFLKAIF-----QNNVTFNTNEDFRSQ 162 Query: 546 AGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN-TYSESPASF 604 G ++++ E N ++ ++K ++ + A F Sbjct: 163 FNS------DWAGKLLIMVDEVLLNRREDSERLKNLSTTLSYKVEAKGKDRDEIGFFAKF 216 Query: 605 TPFIVPNKHLFVRNPDDA-WWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWF 659 + + + +W R ++P + N D F QKL + Sbjct: 217 VLCSNNEHLPVIIDAGETRYWVR-KIVP----LQNDDTDFLQKL-KAEIPAFLHFL 266 >gi|237735523|ref|ZP_04566004.1| recA-family ATPase [Mollicutes bacterium D7] gi|229381268|gb|EEO31359.1| recA-family ATPase [Coprobacillus sp. D7] Length = 738 Score = 53.7 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 26/184 (14%), Positives = 58/184 (31%), Gaps = 34/184 (18%) Query: 209 EITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGST-YDEENFNY 267 ++ L+ N + EW V MA+ +E S+ WS++ S Y ++ Sbjct: 6 DLIEILNYIDPSRLN--YQEWCCVGMALKYEGYSVSE----WDSWSRRDSKRYHDKECLK 59 Query: 268 KWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLAS------RFSDAYNKAMFSIYKK 321 KWDTF + T ++ + + + D N K Sbjct: 60 KWDTFTGSGV--------TGGTIVQYAKDQGWTPPVKDGAGHELDWDDVINA------KD 105 Query: 322 GHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSK 381 + + W + + +A ++ +L ++ + +++ + K Sbjct: 106 EKVIVD---RNWLEVKEVREPRG----WDPSAELITYLETLFDSTENVAYVTKSWFNEEK 158 Query: 382 SPRF 385 Sbjct: 159 QKHL 162 >gi|289937678|ref|YP_003482280.1| hypothetical protein Nmag_4210 [Natrialba magadii ATCC 43099] gi|289533369|gb|ADD07718.1| conserved hypothetical protein [Natrialba magadii ATCC 43099] Length = 353 Score = 53.7 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 37/268 (13%), Positives = 60/268 (22%), Gaps = 57/268 (21%) Query: 38 EQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDID-SKDEKTANTF---KDTFEILHGTPI 93 + E A G GFV PL D+D +D + E L Sbjct: 16 TNDAALEYAATGAADGIGFVF-TATVPLVGVDVDDCRDPEAGEPLESALSIIEQLDSFTE 74 Query: 94 VRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTP 153 V ++ + G +++ ++F H Sbjct: 75 VSPSGTGYHVLL-------EGDLPDGRNRHGSIEMYDQARFFTVTADHVDG--------- 118 Query: 154 PHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAF 213 TP E + L +E + +++ + T Sbjct: 119 --------TPTSINERQDALEAVHEEFVAEDDTTNDINSTTGDRRDDSGQSQTLELEDEE 170 Query: 214 LSCFGEEFYNGS------------HDEWIPVVMAV---------------HHETRGSSKG 246 L NG +D MA+ R S Sbjct: 171 LLEKARSAGNGDKFDRLWRGNTSGYDSQSEADMALCCLLAFWTGGNRLQMDRLFRQSGLI 230 Query: 247 KEIARRW-SKQGSTYDEENFNYKWDTFD 273 + GSTY E+ D Sbjct: 231 RGKWDDVHHADGSTYGEKTLERAIAATD 258 >gi|123365708|ref|XP_001296382.1| hypothetical protein [Trichomonas vaginalis G3] gi|121875931|gb|EAX83452.1| hypothetical protein TVAG_318450 [Trichomonas vaginalis G3] Length = 211 Score = 53.7 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 30/201 (14%), Positives = 60/201 (29%), Gaps = 15/201 (7%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T + Sbjct: 69 MVSNNVVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724 + IP + ++ + + +ID+ + + SL Y +Y ++ Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFECLDERSLYDEYKQYCQE 178 Query: 725 ELNYDRKRISTRTVTLNLKQK 745 Y S RT N+K Sbjct: 179 ---YGYMTASKRTFLANVKSL 196 >gi|123315456|ref|XP_001292104.1| hypothetical protein [Trichomonas vaginalis G3] gi|121867154|gb|EAX79174.1| hypothetical protein TVAG_544490 [Trichomonas vaginalis G3] Length = 211 Score = 53.7 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 32/205 (15%), Positives = 60/205 (29%), Gaps = 23/205 (11%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T + Sbjct: 69 MVSNNSVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSE 720 + IP + ++ + + +ID +C D SL Y + Sbjct: 125 DISKFNPRQIPYT--EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDEYKQ 174 Query: 721 YREQELNYDRKRISTRTVTLNLKQK 745 Y ++ Y S RT N+K Sbjct: 175 YCQE---YGYMTASKRTFLANVKNL 196 >gi|123299004|ref|XP_001290934.1| hypothetical protein [Trichomonas vaginalis G3] gi|121864246|gb|EAX78004.1| hypothetical protein TVAG_285130 [Trichomonas vaginalis G3] Length = 194 Score = 53.7 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 29/191 (15%), Positives = 54/191 (28%), Gaps = 23/191 (12%) Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620 + + +N+ +K + Y + + + N Sbjct: 6 CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESS 65 Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679 D RRY+V+ +D + L T + IP Sbjct: 66 D---RRYVVVR-TSDSHMQDTEYFDDLAETLTPNFYNHLFSYFMTLDISKFNPRQIPYT- 120 Query: 680 LKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIS 734 + ++ + + +ID +C D SL SY +Y ++ Y S Sbjct: 121 -EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDSYKQYCQE---YGYMAAS 168 Query: 735 TRTVTLNLKQK 745 RT N+K Sbjct: 169 KRTFLANVKNL 179 >gi|315122492|ref|YP_004062981.1| P4 family phage/plasmid primase [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495894|gb|ADR52493.1| P4 family phage/plasmid primase [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 75 Score = 53.7 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 44/60 (73%), Positives = 48/60 (80%) Query: 703 IGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKS 762 +GE EES LAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGG + EK + + Sbjct: 6 VGEGFLEESSILAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGREWEKSNSDRRK 65 >gi|319639756|ref|ZP_07994486.1| hypothetical protein HMPREF9011_00083 [Bacteroides sp. 3_1_40A] gi|317388573|gb|EFV69422.1| hypothetical protein HMPREF9011_00083 [Bacteroides sp. 3_1_40A] Length = 396 Score = 53.7 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 41/308 (13%), Positives = 87/308 (28%), Gaps = 51/308 (16%) Query: 357 NFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFS 416 + + ++ + +P N K W N + K+ ++ F Sbjct: 4 EEYMRVGTTLYKVVNQPCANGGYEKKRVVWNN------STLRQDYGKNYLATVPKYDGFC 57 Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY 476 + L+ G + + ++ + L+ Sbjct: 58 TVPNHLNYQKEIEGFLN------LYEPIEHKP-------------QQGEFSHIQSLMRHI 98 Query: 477 FESE-EV-MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534 F + E+ MDY L K + + +GKST +N +K F V Sbjct: 99 FGEQYELGMDYMQLLY---LQPTQKLPIVLLVSEERNTGKSTFLNFLKAVF-ENNVTFNT 154 Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594 D + G ++++ E N ++ ++K ++ G Sbjct: 155 NEDFRSQFNSDWA----------GKLLIVVDEVLLNRREDSERLKNLSTTFTYKVEAK-G 203 Query: 595 NTYSESPASFTPFIVPNK--HLFVRNPDDA-WWRRYIVIPFDKPIANRDASFAQKLETKY 651 +E + N + + + +W R ++P D +F QKL Sbjct: 204 KDRTEIAFFAKFVLCSNNEYLPILIDAGETRYWVR-KIMPLQS----DDTNFLQKL-KAE 257 Query: 652 TLEAKKWF 659 + Sbjct: 258 IPAFLYFL 265 >gi|191637875|ref|YP_001987041.1| Orf271 gp (Gp271) [Lactobacillus casei BL23] gi|190712177|emb|CAQ66183.1| Orf271 gp (Gp271) [Lactobacillus casei BL23] gi|327381944|gb|AEA53420.1| Phage protein [Lactobacillus casei LC2W] gi|327385104|gb|AEA56578.1| Phage protein [Lactobacillus casei BD-II] Length = 265 Score = 53.7 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 34/269 (12%), Positives = 79/269 (29%), Gaps = 24/269 (8%) Query: 9 QAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLL-SSEKIDKL----PACGFGFVCGVGEQ 63 A GF ++P+ K+P ++ ++ ++++I + P Sbjct: 7 YAVAYAEKGFYVLPMHR--KKPMI--EFADRPAMTADEIKRFWTTHPQAQIALRTVHH-- 60 Query: 64 PLYAFDID-SKDEKTANTFKDTFE--ILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120 + DID D +TFE + + + I + + Sbjct: 61 --FVVDIDQHDDGADGFLSFNTFEHPEYFEDTLSQTTAGGGMQIFYLKPDG--VEIPQII 116 Query: 121 STQGHLDILGC-GQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQE 179 +DI Y + + + Y W + D L++E + + + Sbjct: 117 GWLPGVDIKAHTNNYTMVAPSRTEKGQ-YKWDCKHSIVEASD-GLIAELTKQKFTESRYQ 174 Query: 180 ITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHE 239 KKS N T A + G + D + V+A+ + Sbjct: 175 PEALSAPVKKSATAELFEQVVNGLGETGGRNNALAAFVGGLLF---RDVSVDAVLALAKQ 231 Query: 240 TRGSSKGKEIARRWSKQGSTYDEENFNYK 268 ++ + + + + ++ + Sbjct: 232 ANDNTPKSLDGKEFDRTFESMVKKEIRRR 260 >gi|167462159|ref|ZP_02327248.1| RecA-family ATPase [Paenibacillus larvae subsp. larvae BRL-230010] Length = 768 Score = 53.7 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 39/220 (17%), Positives = 73/220 (33%), Gaps = 24/220 (10%) Query: 209 EITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGST-YDEENFNY 267 ++ + L + N + EWI V MA+ +E +S WSK+ ST Y Sbjct: 24 DLVSLLEYIDPSYLN--YQEWINVGMALKYEGYTASD----WDDWSKRDSTRYHPGECFK 77 Query: 268 KWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYT 327 KW TF+ T ++ A R + ++ G Y Sbjct: 78 KWTTFEGTGT------PITGATITQMAKDNGWMPRSADREDRELD---WNDEIAGD--YV 126 Query: 328 ADTKAWYK-KDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNN-KNSKSPRF 385 K W + K+ + +W+ + + + L E+V + + +++ K + Sbjct: 127 VVDKNWIEGKEIHEPAVWNPV--QQLTTYLEILFEASENVGYVVDTWQNDEGKYLPTKGA 184 Query: 386 WFNTDYRRQNVEE--NSKAKSTAQSLEAGSIFSITSDLLD 423 W + + N S + I + LD Sbjct: 185 WDRSAGELIQLLNQCNGDIGSVLGDYNPEAGAWIRFNPLD 224 >gi|330818031|ref|YP_004361736.1| primase 2 [Burkholderia gladioli BSR3] gi|327370424|gb|AEA61780.1| primase 2 [Burkholderia gladioli BSR3] Length = 953 Score = 53.7 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 2/54 (3%) Query: 224 GSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEI 277 D W V MA+ E +G + WS+ Y+ ++ W +F +I Sbjct: 17 DDRDTWRQVGMALKAEF--GEEGFALWNEWSQGAQNYNGKDARDVWKSFKGGKI 68 >gi|238028381|ref|YP_002912612.1| inner membrane protein [Burkholderia glumae BGR1] gi|237877575|gb|ACR29908.1| Inner membrane protein [Burkholderia glumae BGR1] Length = 958 Score = 53.7 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 2/54 (3%) Query: 224 GSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEI 277 D W V MA+ E +G + WS+ Y+ ++ W +F +I Sbjct: 22 DDRDTWRQVGMALKAEF--GEEGFALWNEWSQGAQNYNGKDARDVWKSFKGGKI 73 >gi|170733820|ref|YP_001765767.1| primase 2 [Burkholderia cenocepacia MC0-3] gi|169817062|gb|ACA91645.1| Primase 2 [Burkholderia cenocepacia MC0-3] Length = 953 Score = 53.7 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 2/54 (3%) Query: 224 GSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEI 277 D W V MA+ E +G + WS+ Y+ ++ W +F +I Sbjct: 17 DDRDTWRQVGMALKAEF--GEEGFALWNEWSQGAQNYNGKDARDVWKSFKGGKI 68 >gi|254190716|ref|ZP_04897223.1| conserved hypothetical protein [Burkholderia pseudomallei Pasteur 52237] gi|157938391|gb|EDO94061.1| conserved hypothetical protein [Burkholderia pseudomallei Pasteur 52237] Length = 922 Score = 53.7 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 2/54 (3%) Query: 224 GSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEI 277 D W V MA+ E +G + WS+ Y+ ++ W +F +I Sbjct: 17 DDRDTWRQVGMALKAEF--GEEGFALWNEWSQGAQNYNGKDARDVWKSFKGGKI 68 >gi|254253429|ref|ZP_04946747.1| Superfamily II helicase [Burkholderia dolosa AUO158] gi|124896038|gb|EAY69918.1| Superfamily II helicase [Burkholderia dolosa AUO158] Length = 958 Score = 53.7 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 2/54 (3%) Query: 224 GSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEI 277 D W V MA+ E +G + WS+ Y+ ++ W +F +I Sbjct: 22 DDRDTWRQVGMALKAEF--GEEGFALWNEWSQGAQNYNGKDARDVWKSFKGGKI 73 >gi|76809069|ref|YP_332699.1| inner membrane protein [Burkholderia pseudomallei 1710b] gi|237811419|ref|YP_002895870.1| primase C 2 (PriCT-2) family [Burkholderia pseudomallei MSHR346] gi|254260840|ref|ZP_04951894.1| DNA primase TraC [Burkholderia pseudomallei 1710a] gi|76578522|gb|ABA47997.1| inner membrane protein [Burkholderia pseudomallei 1710b] gi|237505486|gb|ACQ97804.1| primase C 2 (PriCT-2) family [Burkholderia pseudomallei MSHR346] gi|254219529|gb|EET08913.1| DNA primase TraC [Burkholderia pseudomallei 1710a] Length = 953 Score = 53.7 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 2/54 (3%) Query: 224 GSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEI 277 D W V MA+ E +G + WS+ Y+ ++ W +F +I Sbjct: 17 DDRDTWRQVGMALKAEF--GEEGFALWNEWSQGAQNYNGKDARDVWKSFKGGKI 68 >gi|153835208|ref|ZP_01987875.1| primase C 2 (PriCT-2) family [Vibrio harveyi HY01] gi|148868318|gb|EDL67446.1| primase C 2 (PriCT-2) family [Vibrio harveyi HY01] Length = 1209 Score = 53.7 bits (127), Expect = 1e-04, Method: Composition-based stats. Identities = 29/146 (19%), Positives = 52/146 (35%), Gaps = 18/146 (12%) Query: 200 NNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGST 259 N Q E LS + + W + A+ E + ++I RWS G++ Sbjct: 3 ANYIQLELYEAEEALSHISPDLP---YKRWSKIGRALVSEY--GNDARDIFERWSATGNS 57 Query: 260 YDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIY 319 YD+ F W F + R++F S Y + +S+ + +F+ Y Sbjct: 58 YDKRGFKSWWKNFQRVK-------RTSFGSFIYEAMEAGW-KPKKKDYSEEERQKLFADY 109 Query: 320 KK-----GHFLYTADTKAWYKKDKNN 340 +K A+ + W + K Sbjct: 110 EKRKKAAERRRIQAEQEQWNELKKEE 135 >gi|123194362|ref|XP_001283044.1| hypothetical protein [Trichomonas vaginalis G3] gi|121841640|gb|EAX70114.1| hypothetical protein TVAG_106280 [Trichomonas vaginalis G3] Length = 211 Score = 53.4 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 32/205 (15%), Positives = 60/205 (29%), Gaps = 23/205 (11%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKGLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T + Sbjct: 69 MVSNNTVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSE 720 + IP + ++ + + +ID +C D SL Y + Sbjct: 125 DISKFNPRQIPYT--EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDEYKQ 174 Query: 721 YREQELNYDRKRISTRTVTLNLKQK 745 Y ++ Y S RT N+K Sbjct: 175 YCQE---YGYMTASKRTFLANVKNL 196 >gi|123159659|ref|XP_001278860.1| hypothetical protein [Trichomonas vaginalis G3] gi|123253222|ref|XP_001289038.1| hypothetical protein [Trichomonas vaginalis G3] gi|121826812|gb|EAX65930.1| hypothetical protein TVAG_153960 [Trichomonas vaginalis G3] gi|121859376|gb|EAX76108.1| hypothetical protein TVAG_324110 [Trichomonas vaginalis G3] Length = 211 Score = 53.4 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 32/205 (15%), Positives = 60/205 (29%), Gaps = 23/205 (11%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T + Sbjct: 69 MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSE 720 + IP + ++ + + +ID +C D SL Y + Sbjct: 125 DISKFNPRQIPYT--EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDEYKQ 174 Query: 721 YREQELNYDRKRISTRTVTLNLKQK 745 Y ++ Y S RT N+K Sbjct: 175 YCQE---YGYMTASKRTFLANVKNL 196 >gi|237813308|ref|YP_002897759.1| primase C 2 (PriCT-2) family [Burkholderia pseudomallei MSHR346] gi|237503709|gb|ACQ96027.1| primase C 2 (PriCT-2) family [Burkholderia pseudomallei MSHR346] Length = 949 Score = 53.4 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 2/61 (3%) Query: 224 GSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKK 283 D W V MAV E +G + WS+ +Y+ ++ W +F +I Sbjct: 17 DDRDTWRQVGMAVKAEF--GEEGFSLWSEWSQGAQSYNAKDARDVWKSFKGGKITINTLY 74 Query: 284 R 284 Sbjct: 75 H 75 >gi|167825274|ref|ZP_02456745.1| hypothetical protein Bpseu9_16513 [Burkholderia pseudomallei 9] gi|226197848|ref|ZP_03793422.1| primase C 2 (PriCT-2) family [Burkholderia pseudomallei Pakistan 9] gi|225930036|gb|EEH26049.1| primase C 2 (PriCT-2) family [Burkholderia pseudomallei Pakistan 9] Length = 949 Score = 53.4 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 2/61 (3%) Query: 224 GSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKK 283 D W V MAV E +G + WS+ +Y+ ++ W +F +I Sbjct: 17 DDRDTWRQVGMAVKAEF--GEEGFSLWSEWSQGAQSYNAKDARDVWKSFKGGKITINTLY 74 Query: 284 R 284 Sbjct: 75 H 75 >gi|123187796|ref|XP_001281697.1| hypothetical protein [Trichomonas vaginalis G3] gi|121837036|gb|EAX68767.1| hypothetical protein TVAG_510970 [Trichomonas vaginalis G3] Length = 194 Score = 53.4 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 27/187 (14%), Positives = 56/187 (29%), Gaps = 15/187 (8%) Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620 + + +N+ +K + Y + + + N Sbjct: 6 CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNVVPMKLESS 65 Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679 D RRY+V+ +D + L T + + IP Sbjct: 66 D---RRYVVVR-TSEAHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120 Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738 + ++ + + +ID+ + + + SL SY +Y ++ Y S RT Sbjct: 121 -EERQTLLEANKSVYELFIDE----TDFVSLDERSLYDSYKQYCQE---YGYMTASKRTF 172 Query: 739 TLNLKQK 745 N+K Sbjct: 173 LANVKSL 179 >gi|300215226|gb|ADJ79642.1| Putative uncharacterized protein [Lactobacillus salivarius CECT 5713] Length = 209 Score = 53.4 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 17/135 (12%), Positives = 33/135 (24%), Gaps = 16/135 (11%) Query: 50 PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDT--FEILHGTPIVRIGQKPKILIPFR 107 P G L DID+ + + + V + + +R Sbjct: 4 PNINIGLNLAK--SNLIVVDIDNHNNDLQAPLQSLSNLGYNLPSDYVERTKSGGLHFYYR 61 Query: 108 MNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSE 167 + +KT +D+L + V T + + D P Sbjct: 62 CSDGIPATRKTKFID--GVDLLSD--FVVTSPS--------TNYKILNGATLNDIPQTPN 109 Query: 168 EDVEYLFKFFQEITV 182 ++ L Sbjct: 110 WIIKALDNRVMPTDK 124 >gi|257080671|ref|ZP_05575032.1| RecA-family ATPase [Enterococcus faecalis E1Sol] gi|256988701|gb|EEU76003.1| RecA-family ATPase [Enterococcus faecalis E1Sol] Length = 743 Score = 53.4 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 28/197 (14%), Positives = 58/197 (29%), Gaps = 22/197 (11%) Query: 198 TNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQG 257 + E+ ++ + EW+ V MA+ E + +WS+ Sbjct: 2 KTQMENKLDLIELLEYIDPASL-----GYQEWVNVGMALKQEGYTAVD----WDQWSQSD 52 Query: 258 STYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFS 317 S Y KW++F + + +T T L +G P +N + Sbjct: 53 SRYHSGECFKKWESF---QGTSSPITGATITQLAKENGWTSPFKSGDGGHELDWNDTL-- 107 Query: 318 IYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNN 377 +K + W + I + I+ +L ++ E ++ + Sbjct: 108 --QKDDL--VIIDRNWIE----GKEIQEPKKWEPAKEIIRYLETLFEPSETVAYNVQSWQ 159 Query: 378 KNSKSPRFWFNTDYRRQ 394 + Y R Sbjct: 160 DEDGKWKPSNKGAYDRT 176 >gi|123203525|ref|XP_001284351.1| hypothetical protein [Trichomonas vaginalis G3] gi|121845667|gb|EAX71421.1| hypothetical protein TVAG_573480 [Trichomonas vaginalis G3] Length = 187 Score = 53.4 bits (126), Expect = 1e-04, Method: Composition-based stats. Identities = 29/188 (15%), Positives = 54/188 (28%), Gaps = 23/188 (12%) Query: 564 ISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAW 623 + + +N+ +K + Y + + + N D Sbjct: 2 LQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNSVPMKLESSD-- 59 Query: 624 WRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVCLKA 682 RRY+V+ +D + L T + IP + Sbjct: 60 -RRYVVVR-TSEAHMQDTEYFDDLAETLTPNFYNHLFSYFMTLDISKFNPRQIPHT--EE 115 Query: 683 KEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRT 737 ++ + + +ID +C D SL SY +Y ++ Y S RT Sbjct: 116 RQTLLEANKSVYELFIDETNFECLDE--------RSLYDSYKQYCQE---YGYMAASKRT 164 Query: 738 VTLNLKQK 745 N+K Sbjct: 165 FLANVKSL 172 >gi|254804775|ref|YP_003082996.1| putative bacteriophage P4 DNA primase-like protein [Neisseria meningitidis alpha14] gi|254668317|emb|CBA05290.1| putative bacteriophage P4 DNA primase-like protein [Neisseria meningitidis alpha14] Length = 867 Score = 53.4 bits (126), Expect = 2e-04, Method: Composition-based stats. Identities = 45/354 (12%), Positives = 80/354 (22%), Gaps = 62/354 (17%) Query: 283 KRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVY 342 + + + + +R Y + K D + + Sbjct: 453 GKDVVDAWYEWGRAPVLTMYEINRLKKDYA--LIQAVKDDDT---QDMMERFIYLDGSAS 507 Query: 343 IWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKA 402 IW L ++ L + P K F + Sbjct: 508 IWDNKLWRVVPEKAARLSMTPDGFKIWVNSPSRIVKRFDRLVFEPGRVLSDDYINIFRGM 567 Query: 403 KSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVE 462 + T+ L + Sbjct: 568 PIEPKFPIPKEDMPETNYEL-------------------------------------YRL 590 Query: 463 GEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLG-GNKAQRFIHIRGV-GGSGKSTLMN 519 + L+L++ + ++Y + L G K + + G G+GKS Sbjct: 591 FPEIKPILNLINHLCNGDYQQVEYILNWLAYPLQNVGAKMTTAVVMHGHIHGAGKSFFFE 650 Query: 520 LIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIIS--ETNENDEINAAK 577 I +Y D+ N G I TN+ Sbjct: 651 EIVKPMYGEYGATYGQEDLESNYTANRS----------GKMFGIFEEVYTNQQKYNKTGS 700 Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHL-FVRNPDDAWWRRYIVI 630 K M G M + + Y E+ F+ H + D RRY V+ Sbjct: 701 QKHMITGKTMRVERKFQDAYEEANHMNCVFLSNESHPFKIEEND----RRYFVV 750 >gi|54307149|ref|YP_133703.1| hypothetical protein NBU1_09 [Bacteroides uniformis] gi|8308024|gb|AAF74441.1|AF238307_5 unknown [Bacteroides uniformis] Length = 396 Score = 53.4 bits (126), Expect = 2e-04, Method: Composition-based stats. Identities = 40/308 (12%), Positives = 86/308 (27%), Gaps = 51/308 (16%) Query: 357 NFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFS 416 + + ++ + +P N K W N + K+ ++ F Sbjct: 4 EEYMRVGTTLYKVVNQPCANGGYEKKRVVWNN------STLRQDYGKNYLATVPKYDGFC 57 Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY 476 + L+ G + + ++ + L+ Sbjct: 58 TVPNHLNYQKEIEGFLN------LYEPIEHKPQQGDFS-------------HIQSLMRHI 98 Query: 477 FESE-EV-MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAE 534 F + E+ MDY L K + + +GKST +N +K F V Sbjct: 99 FGEQYELGMDYMQLLY---LQPTQKLPIVLLVSEERNTGKSTFLNFLKAVF-ENNVTFNT 154 Query: 535 ASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594 D + G ++++ E ++ ++K ++ G Sbjct: 155 NEDFRSQFNSDWA----------GKLLIVVDEVLLYRREDSERLKNLSTTFTYKVEAK-G 203 Query: 595 NTYSESPASFTPFIVPNK--HLFVRNPDDA-WWRRYIVIPFDKPIANRDASFAQKLETKY 651 +E + N + + + +W R ++P D +F QKL Sbjct: 204 KDRTEIAFFAKFVLCSNNEYLPILIDAGETRYWVR-KIMPLQS----DDTNFLQKL-KAE 257 Query: 652 TLEAKKWF 659 + Sbjct: 258 IPAFLYFL 265 >gi|167582916|ref|ZP_02375790.1| inner membrane protein [Burkholderia thailandensis TXDOH] Length = 952 Score = 53.4 bits (126), Expect = 2e-04, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 2/54 (3%) Query: 224 GSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEI 277 D W V MA+ E +G + WS+ Y+ ++ W +F +I Sbjct: 17 DDRDTWSQVGMALKAEF--GEEGFALWNEWSQGAQNYNGKDTRDVWKSFKGGKI 68 >gi|326680871|ref|XP_003201650.1| PREDICTED: DNA-binding protein RFX7-like [Danio rerio] Length = 1431 Score = 53.4 bits (126), Expect = 2e-04, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 26/80 (32%), Gaps = 6/80 (7%) Query: 696 WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755 WI + + + Y Y + N +S +K +K + Sbjct: 92 WIRNHLEEHPETSLPKQEVYDEYKSYCD---NLGYHPLSAADFGKIMKN--VFPNMKARR 146 Query: 756 IEKEWKSKRIIKGLKLKPAF 775 + KSK GL+ K AF Sbjct: 147 LGMRGKSKYCYSGLR-KKAF 165 >gi|123197575|ref|XP_001283827.1| hypothetical protein [Trichomonas vaginalis G3] gi|121844070|gb|EAX70897.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 194 Score = 53.4 bits (126), Expect = 2e-04, Method: Composition-based stats. Identities = 27/187 (14%), Positives = 56/187 (29%), Gaps = 15/187 (8%) Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620 + + +N+ +K + Y + + + N Sbjct: 6 CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESS 65 Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679 D RRY+V+ +D + L T + + IP Sbjct: 66 D---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120 Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738 + ++ + + +ID+ + + + SL SY +Y ++ Y S RT Sbjct: 121 -EERQTLLEANKSVYELFIDE----TDFVSLDERSLYDSYKQYCQE---YGYMTASKRTF 172 Query: 739 TLNLKQK 745 N+K Sbjct: 173 LANVKNL 179 >gi|331703012|ref|YP_003358129.2| RepB [Streptomyces sp. Y27] gi|329331765|gb|ADA71989.2| RepB [Streptomyces sp. Y27] Length = 362 Score = 53.4 bits (126), Expect = 2e-04, Method: Composition-based stats. Identities = 30/258 (11%), Positives = 56/258 (21%), Gaps = 56/258 (21%) Query: 14 IHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKID--------------KLPACGFGFVCG 59 + G ++P DK + + ++E+++ K G + G Sbjct: 45 VSRGIPVVPCGRTDKA-AMAAGF-GKSATAEQLERFGDPEWVARAWSTKYARAHVGLLTG 102 Query: 60 VGEQ--------PLYAFDIDSKDEKTANTFKDTFEILHGT----------------PIVR 95 Q L D+D GT Sbjct: 103 RVTQAAPAELGRGLVVIDLDMPKAGADLPTGRWAGCAGGTDVLELLMREAGADWPDTYTV 162 Query: 96 IGQKPKILIPFRMNKEG--IKKKKTTESTQGH---------LDILGCGQYFVAYNIHP-K 143 + + + +R ++G I + +D+ G G Y +A H Sbjct: 163 LTPSGGMHLYYRQPEDGPLIGCATGAGGDLENPRPPHIGPMVDVRGIGGYVIAAGSHSAA 222 Query: 144 TKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNR 203 + Y L +E L P + + Sbjct: 223 QGRPY----ARESPPDLLPQPLPAWLLELLRPAAAPAPAPRPAVRILPTGDRAERYATAA 278 Query: 204 QYTNREITAFLSCFGEEF 221 A L Sbjct: 279 LEGAAADLAALRPGDHRR 296 >gi|56694890|ref|YP_164400.1| hypothetical protein BCBBV1cgp22 [Bacillus phage BCJA1c] gi|52631317|gb|AAU85069.1| 22 [Bacillus phage BCJA1c] Length = 740 Score = 53.4 bits (126), Expect = 2e-04, Method: Composition-based stats. Identities = 27/157 (17%), Positives = 48/157 (30%), Gaps = 24/157 (15%) Query: 209 EITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQ-GSTYDEENFNY 267 ++ A L + + EW+ V MA+ E +S WSK+ G Y Sbjct: 6 DLIALLEYIDPSYL--DYQEWLNVGMALKSEGYTASD----WEDWSKRDGPRYHPGECFK 59 Query: 268 KWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYT 327 KW TF+ I T ++ + + + G+ Y Sbjct: 60 KWTTFEGNGI--------TGATITQMAKDNGWQ--PRQKEDHELA---WDDEITGNDDYV 106 Query: 328 ADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKE 364 K W + I + + +L ++ E Sbjct: 107 VIDKNWIE----GKEIAEPANWQPVRELTTYLETLFE 139 >gi|213692143|ref|YP_002322729.1| Helicase superfamily 3 [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213523604|gb|ACJ52351.1| Helicase superfamily 3 [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320458261|dbj|BAJ68882.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 837 Score = 53.4 bits (126), Expect = 2e-04, Method: Composition-based stats. Identities = 33/204 (16%), Positives = 63/204 (30%), Gaps = 10/204 (4%) Query: 471 DLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529 ++ + + R + L + + +G GG+GKSTL + G+Q Sbjct: 262 WILDQWTGHDTDSTLNLQRSLAAPFL-RSHPECAYVYQGPGGTGKSTLAKDLMEHLGDQA 320 Query: 530 VINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGG-DCMT 588 + Q A L+ + + T+ E + +K + G + Sbjct: 321 TT-MSLDLLAQPTAMSAENKMGDLMSHLLALSDDYDPTHGRFEKSLPNLKTLLTGLLPFS 379 Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLE 648 AR N+ P S + +A RR+ IA+ L Sbjct: 380 ARRQGENSVDGMPQSVHLITTNYHLPV--SSSEAEQRRFAF----STIASPTTRARHYLP 433 Query: 649 TKYTLEAKKWFLKGVKAYISKGLD 672 + + L G +++ G Sbjct: 434 FRRKHGFWPFMLIGAITWLTIGDR 457 Score = 41.4 bits (95), Expect = 0.66, Method: Composition-based stats. Identities = 20/179 (11%), Positives = 45/179 (25%), Gaps = 19/179 (10%) Query: 63 QPLYAFDIDSKDEKTANTFKDTFEILHGT---PIVRI----GQKPKILIPFRMNKEGIKK 115 D+D + + ++ + P+ R + + + + K Sbjct: 623 DDYMWVDLDCHKQDQMSGWEQIQTDVGPYGTPPLPRTFAVRTPSGGVHLLYHIPDGARLK 682 Query: 116 KKTTESTQGHLDIL-GCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLF 174 +T G +D G Y V + YT P + P LS+ + + Sbjct: 683 SRT--HNGGQIDFKIGRDGYVVMGGSVLPDGRRYT----PIDRPEDRIPDLSDAFLRW-A 735 Query: 175 KFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLS----CFGEEFYNGSHDEW 229 + P + + + + + Y + W Sbjct: 736 ERVDATDKPRHAPAPARTAAAFDLPSPGMPGSPEGEPDMSPIPEGRRNDTLYRWGYGRW 794 >gi|322816464|gb|EFZ24760.1| hypothetical protein TCSYLVIO_9094 [Trypanosoma cruzi] Length = 712 Score = 53.4 bits (126), Expect = 2e-04, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 2/63 (3%) Query: 213 FLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGS-TYDEENFNYKWDT 271 S+D W+ V +A+H+ + E R+S + Y E+ KW Sbjct: 626 EKLRRMPPRSAESYDIWVRVGLALHNFSNEDHV-FEEWVRFSLKCPQKYSRESCRKKWQQ 684 Query: 272 FDF 274 F+ Sbjct: 685 FER 687 >gi|71667860|ref|XP_820875.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70886237|gb|EAN99024.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 721 Score = 53.4 bits (126), Expect = 2e-04, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 2/63 (3%) Query: 213 FLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGS-TYDEENFNYKWDT 271 S+D W+ V +A+H+ + E R+S + Y E+ KW Sbjct: 635 EKLRRMPPRSAESYDIWVRVGLALHNFSNEDHV-FEEWVRFSLKCPQKYSRESCRKKWQQ 693 Query: 272 FDF 274 F+ Sbjct: 694 FER 696 >gi|71660435|ref|XP_821934.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70887325|gb|EAO00083.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 722 Score = 53.4 bits (126), Expect = 2e-04, Method: Composition-based stats. Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 2/63 (3%) Query: 213 FLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGS-TYDEENFNYKWDT 271 S+D W+ V +A+H+ + E R+S + Y E+ KW Sbjct: 636 EKLRRMPPRSAESYDIWVRVGLALHNFSNEDHV-FEEWVRFSLKCPQKYSRESCRKKWQQ 694 Query: 272 FDF 274 F+ Sbjct: 695 FER 697 >gi|123315163|ref|XP_001292021.1| hypothetical protein [Trichomonas vaginalis G3] gi|121866944|gb|EAX79091.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 194 Score = 53.4 bits (126), Expect = 2e-04, Method: Composition-based stats. Identities = 26/187 (13%), Positives = 55/187 (29%), Gaps = 15/187 (8%) Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620 + + +N+ +K + Y + + + N Sbjct: 6 CNELQSIDTTKVLNSNALKSLITDKVGVVERKYKDQRVSENVANFIMVSNNAVPMKLESS 65 Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679 D RRY+V+ +D + L T + + IP Sbjct: 66 D---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120 Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738 + ++ + + +ID+ + + + SL Y +Y ++ Y S RT Sbjct: 121 -EERQTLLEANKSVYELFIDE----TDFVSLDERSLYDEYKQYCQE---YGYMAASKRTF 172 Query: 739 TLNLKQK 745 N+K Sbjct: 173 LANVKSL 179 >gi|123183399|ref|XP_001280876.1| hypothetical protein [Trichomonas vaginalis G3] gi|121834168|gb|EAX67946.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 194 Score = 53.4 bits (126), Expect = 2e-04, Method: Composition-based stats. Identities = 28/187 (14%), Positives = 56/187 (29%), Gaps = 15/187 (8%) Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620 + + +N+ +K + Y + + I N Sbjct: 6 CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMISNNAVPMKLESS 65 Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679 D RRY+V+ +D + L T + + IP Sbjct: 66 D---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120 Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738 + ++ + + +ID+ + + + SL SY +Y ++ Y S RT Sbjct: 121 -EERQTLLEANKSVYELFIDE----TDFVSLDERSLYDSYKQYCQE---YGYMTASKRTF 172 Query: 739 TLNLKQK 745 N+K Sbjct: 173 LANVKSL 179 >gi|121634686|ref|YP_974931.1| hypothetical protein NMC0853 [Neisseria meningitidis FAM18] gi|120866392|emb|CAM10135.1| hypothetical protein (putative ATP-binding protein) [Neisseria meningitidis FAM18] gi|325132326|gb|EGC55019.1| zinc-binding domain of primase-helicase family [Neisseria meningitidis M6190] gi|325138491|gb|EGC61057.1| Zinc-binding domain of primase-helicase family protein [Neisseria meningitidis ES14902] gi|325142185|gb|EGC64608.1| Zinc-binding domain of primase-helicase family protein [Neisseria meningitidis 961-5945] gi|325198113|gb|ADY93569.1| Zinc-binding domain of primase-helicase family protein [Neisseria meningitidis G2136] Length = 948 Score = 53.4 bits (126), Expect = 2e-04, Method: Composition-based stats. Identities = 68/514 (13%), Positives = 121/514 (23%), Gaps = 108/514 (21%) Query: 283 KRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVY 342 + + + + +R Y + K D + + Sbjct: 453 GKDVVDAWYEWGRAPVLTMYEINRLKKDYA--LIQAVKDDDT---QDMMERFIYLDGSAS 507 Query: 343 IWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKA 402 IW L ++ L + P K F + Sbjct: 508 IWDNKLWRVVPEKAARLSMTPDGFKIWVNSPSRIVKRFDRLVFEPGRVLSDDYINIFRGM 567 Query: 403 KSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVE 462 + T+ L + Sbjct: 568 PIEPKFPIPKEDMPETNYEL-------------------------------------YRL 590 Query: 463 GEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLG-GNKAQRFIHIRGV-GGSGKSTLMN 519 + L+L++ + ++Y + L G K + + G G+GKS Sbjct: 591 FPEIKPILNLINHLCNGDYQQVEYILNWLAYPLQNVGAKMTTAVVMHGHIHGAGKSFFFE 650 Query: 520 LIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIIS--ETNENDEINAAK 577 I +Y D+ N G I TN+ Sbjct: 651 EIVKPMYGEYGATYGQEDLESNYTANRS----------GKMFGIFEEVYTNQQKYNKTGS 700 Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHL-FVRNPDDAWWRRYIVIPFDKPI 636 K M G M + + Y E+ F+ H + D RRY V+ +K + Sbjct: 701 QKHMITGKTMRVERKFQDAYEEANHMNCVFLRNESHPFKIEEND----RRYFVVWPEKKL 756 Query: 637 ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKG--------------------LDVDIP 676 + + FL Y++ G D + P Sbjct: 757 DKKLRDEVLDCIGNDGVRLFYSFLLCWNFYLTYGQQGAENEKGYEVIKLEEPVRFDPNTP 816 Query: 677 EVCLKAKE--------EERQGTDTYQAW----IDD---CCDIGENLWEESHSLAKSYSEY 721 AK+ + Y W I D CC I ++LW Y E+ Sbjct: 817 PPMTAAKQNVISYGRYAWQT---FYSEWAGGGIKDLPFCCCITDDLWL-------VYKEW 866 Query: 722 REQELNYDR-KRISTRTVTLNLKQKGFIGGIKRE 754 Q + K + + + + K + Sbjct: 867 CRQNGERETGKTKFLQHIAEKMPRARRWWRTKNK 900 >gi|123166527|ref|XP_001279261.1| hypothetical protein [Trichomonas vaginalis G3] gi|121828317|gb|EAX66331.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 194 Score = 53.4 bits (126), Expect = 2e-04, Method: Composition-based stats. Identities = 29/191 (15%), Positives = 54/191 (28%), Gaps = 23/191 (12%) Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620 + + +N+ +K + Y + + + N Sbjct: 6 CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFVMVSNNAVPMKLESS 65 Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679 D RRY+V+ +D + L T + IP Sbjct: 66 D---RRYVVVR-TSDSHMQDTEYFDDLAETLTPNFYNHLFSYFMTLDISKFNPRQIPHT- 120 Query: 680 LKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIS 734 + ++ + + +ID +C D SL SY +Y ++ Y S Sbjct: 121 -EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDSYKQYCQE---YGYMTAS 168 Query: 735 TRTVTLNLKQK 745 RT N+K Sbjct: 169 KRTFLANVKSL 179 >gi|157865925|ref|XP_001681669.1| hypothetical protein [Leishmania major strain Friedlin] gi|68124967|emb|CAJ02695.1| conserved hypothetical protein [Leishmania major strain Friedlin] Length = 543 Score = 53.4 bits (126), Expect = 2e-04, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 26/72 (36%), Gaps = 2/72 (2%) Query: 204 QYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGS-TYDE 262 ++ + S+D W+ V +A+H+ + E R+S + Y Sbjct: 451 KWRRFKAVTAKLRTLPPRAAESYDVWVRVGLALHNFSNEDHV-FEEWVRFSLKSPLKYSR 509 Query: 263 ENFNYKWDTFDF 274 E KW F+ Sbjct: 510 EVCRKKWVQFER 521 >gi|123447212|ref|XP_001312348.1| hypothetical protein [Trichomonas vaginalis G3] gi|121894192|gb|EAX99418.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 194 Score = 53.0 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 27/187 (14%), Positives = 56/187 (29%), Gaps = 15/187 (8%) Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620 + + +N+ +K + Y + + + N Sbjct: 6 CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESS 65 Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679 D RRY+V+ +D + L T + + IP Sbjct: 66 D---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120 Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738 + ++ + + +ID+ + + + SL SY +Y ++ Y S RT Sbjct: 121 -EERQTLLEANKSVYELFIDE----TDFVSLDERSLYDSYKQYCQE---YGYMAASKRTF 172 Query: 739 TLNLKQK 745 N+K Sbjct: 173 LANVKSL 179 >gi|256841352|ref|ZP_05546859.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|256737195|gb|EEU50522.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 418 Score = 53.0 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 29/197 (14%), Positives = 58/197 (29%), Gaps = 26/197 (13%) Query: 465 PSQEFLDLVSGYFESE-EV-MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIK 522 L+ F + E+ MDY L K + + +GK+T +N +K Sbjct: 109 DFPNIKKLLFHIFGEQYELGMDYLQLLY---LRPVQKLPILLLVSEERNTGKTTFLNFLK 165 Query: 523 YAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMT 582 F + N Q G ++++ E + ++ ++K ++ Sbjct: 166 ALFQDNVTFNTNEDFRSQFN-----------ADWAGKLLIVVDEVLLSRREDSERLKNLS 214 Query: 583 GGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA---NR 639 G +E + N D+ R + + I+ + Sbjct: 215 TTLSYKVEAK-GKDRNEISFFAKFVLCSNNESLPVIIDEGETR-----YWVRKISSLQSD 268 Query: 640 DASFAQKLETKYTLEAK 656 D F +KL Sbjct: 269 DTDFLRKLI-AEIPAFL 284 >gi|261881017|ref|ZP_06007444.1| conserved hypothetical protein [Prevotella bergensis DSM 17361] gi|270332245|gb|EFA43031.1| conserved hypothetical protein [Prevotella bergensis DSM 17361] Length = 396 Score = 53.0 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 69/233 (29%), Gaps = 27/233 (11%) Query: 433 DGILDLETGQKVKPTKELYITKSTGTPFVEGE-PSQEFLDLVSGYFESE-EV-MDYFTRC 489 DG + +P + ++ E L+S F + E+ MDY Sbjct: 54 DGFCTVPNHVNYQPVIDKFLNLYEPIGHQPKEGEFPHVESLISHIFGEQYELGMDYLQLL 113 Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549 L K + + +GKST +N +K F N N Q Sbjct: 114 Y---LQPVQKLPILLMVSEERNTGKSTFLNFLKAVFHNNVTFNTNEDFRSQFN------- 163 Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609 G ++++ E N ++ ++K ++ G E + Sbjct: 164 ----SDWAGKLLIVVDEVLLNRREDSERLKNLSTTLSYKVEAK-GKDRDEISFFAKFVLC 218 Query: 610 PNK--HLFVRNPDDA-WWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWF 659 N + + + +W R I + + D F QKL + Sbjct: 219 SNNELLPVIIDVGETRYWVRKI-----NRLESDDTDFLQKL-KAEIPAFLYFL 265 >gi|123334536|ref|XP_001294116.1| hypothetical protein [Trichomonas vaginalis G3] gi|121871726|gb|EAX81186.1| hypothetical protein TVAG_314530 [Trichomonas vaginalis G3] Length = 194 Score = 53.0 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 28/191 (14%), Positives = 53/191 (27%), Gaps = 23/191 (12%) Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620 + + +N+ +K + Y + + + N Sbjct: 6 CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNVVPMKLESS 65 Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679 D RRY+V+ +D + L T + IP Sbjct: 66 D---RRYVVVR-TSDSHMQDTEYFDDLAETLTPNFYNHLFSYFMTLDISKFNPRQIPHT- 120 Query: 680 LKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIS 734 + ++ + + +ID +C D SL Y +Y ++ Y S Sbjct: 121 -EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDEYKQYCQE---YGYMAAS 168 Query: 735 TRTVTLNLKQK 745 RT N+K Sbjct: 169 KRTFLANVKNL 179 >gi|123390781|ref|XP_001299948.1| hypothetical protein [Trichomonas vaginalis G3] gi|121880900|gb|EAX87018.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 194 Score = 53.0 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 27/187 (14%), Positives = 56/187 (29%), Gaps = 15/187 (8%) Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620 + + +N+ +K + Y + + + N Sbjct: 6 CNELQSIDTTKVLNSNALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESS 65 Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679 D RRY+V+ +D + L T + + IP Sbjct: 66 D---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120 Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738 + ++ + + +ID+ + + + SL SY +Y ++ Y S RT Sbjct: 121 -EERQTLLEANKSVYELFIDE----TDFVSLDERSLYDSYKQYCQE---YGYMTASKRTF 172 Query: 739 TLNLKQK 745 N+K Sbjct: 173 LANVKSL 179 >gi|123195938|ref|XP_001283419.1| hypothetical protein [Trichomonas vaginalis G3] gi|121842841|gb|EAX70489.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 194 Score = 53.0 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 27/187 (14%), Positives = 55/187 (29%), Gaps = 15/187 (8%) Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620 + + +N+ +K + Y + + + N Sbjct: 6 CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESS 65 Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679 D RRY+V+ +D + L T + + IP Sbjct: 66 D---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120 Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738 + ++ + + +ID+ + + SL SY +Y ++ Y S RT Sbjct: 121 -EERQTLLEANKSVYELFIDETNFVSLDE----RSLYDSYKQYCQE---YGYMAASKRTF 172 Query: 739 TLNLKQK 745 N+K Sbjct: 173 LANVKNL 179 >gi|123403492|ref|XP_001302246.1| hypothetical protein [Trichomonas vaginalis G3] gi|121883517|gb|EAX89316.1| hypothetical protein TVAG_017640 [Trichomonas vaginalis G3] Length = 190 Score = 53.0 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 26/187 (13%), Positives = 53/187 (28%), Gaps = 15/187 (8%) Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620 + + +N+ +K + Y + + + N Sbjct: 6 CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESS 65 Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679 D RRY+V+ +D + L T + IP Sbjct: 66 D---RRYVVVR-TSEAHMQDTEYFDDLAETLTPNFYNHLFSYFMTLDISKFNPRQIPY-- 119 Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738 + ++ + + +ID+ + + SL Y +Y ++ Y S RT Sbjct: 120 TEERQTLLEANKSVYELFIDE----TDFECLDERSLYDEYKQYCQE---YGYMAASKRTF 172 Query: 739 TLNLKQK 745 N+K Sbjct: 173 LANVKSL 179 >gi|123293984|ref|XP_001290660.1| hypothetical protein [Trichomonas vaginalis G3] gi|123437598|ref|XP_001309593.1| hypothetical protein [Trichomonas vaginalis G3] gi|121863548|gb|EAX77730.1| conserved hypothetical protein [Trichomonas vaginalis G3] gi|121891327|gb|EAX96663.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 194 Score = 53.0 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 27/187 (14%), Positives = 56/187 (29%), Gaps = 15/187 (8%) Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620 + + +N+ +K + Y + + + N Sbjct: 6 CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNTVPMKLESS 65 Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679 D RRY+V+ +D + L T + + IP Sbjct: 66 D---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120 Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738 + ++ + + +ID+ + + + SL SY +Y ++ Y S RT Sbjct: 121 -EERQTLLEANKSVYELFIDE----TDFVSLDERSLYDSYKQYCQE---YGYMAASKRTF 172 Query: 739 TLNLKQK 745 N+K Sbjct: 173 LANVKSL 179 >gi|123274309|ref|XP_001289871.1| hypothetical protein [Trichomonas vaginalis G3] gi|121861551|gb|EAX76941.1| hypothetical protein TVAG_441850 [Trichomonas vaginalis G3] Length = 194 Score = 53.0 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 29/191 (15%), Positives = 54/191 (28%), Gaps = 23/191 (12%) Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620 + + +N+ +K + Y + + + N Sbjct: 6 CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNVVPMKLESS 65 Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679 D RRY+V+ +D + L T + IP Sbjct: 66 D---RRYVVVR-TSDSHMQDTEYFDDLAETLTPNFYNHLFSYFMTLDISKFNPRQIPYT- 120 Query: 680 LKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIS 734 + ++ + + +ID +C D SL SY +Y ++ Y S Sbjct: 121 -EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDSYKQYCQE---YGYMAAS 168 Query: 735 TRTVTLNLKQK 745 RT N+K Sbjct: 169 KRTFLANVKNL 179 >gi|194466777|ref|ZP_03072764.1| Bifunctional DNA primase/polymerase [Lactobacillus reuteri 100-23] gi|194453813|gb|EDX42710.1| Bifunctional DNA primase/polymerase [Lactobacillus reuteri 100-23] Length = 263 Score = 53.0 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 23/225 (10%), Positives = 64/225 (28%), Gaps = 21/225 (9%) Query: 9 QAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQL-LSSEKIDK-LPACGFGFVCGVGEQPLY 66 A G ++P+ K+P K+ ++ L++E+I + + + + Sbjct: 7 YALAYQAKGLSVLPI--AGKQPLI--KFADKPALTAEQIKTVWKKHPYAQI-ALRTDKFF 61 Query: 67 AFDIDSKDEKTANTFKDTFE---ILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQ 123 DID + F+ + + + + + + + + Q Sbjct: 62 VVDIDRHHADNIDGFESIKQLPAEYFPETLTQTTKHGGRQLFYLKRPDM--RVNQLIGYQ 119 Query: 124 GHLDILGC-GQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEIT- 181 +DI Y V + Y W + +++ + + Sbjct: 120 PGIDIKAHQNNYVVVAPS-----EGYQWLNKNPIVTAPKSLVVNINQMRASNRRNTPNDF 174 Query: 182 --VPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNG 224 P ++ + + ++ N+ + + N Sbjct: 175 VIKPRERNSTTDLLETIANGLGDKGMRNKTLAGMIGALLFRGVNP 219 >gi|298249361|ref|ZP_06973165.1| helix-turn-helix domain protein [Ktedonobacter racemifer DSM 44963] gi|297547365|gb|EFH81232.1| helix-turn-helix domain protein [Ktedonobacter racemifer DSM 44963] Length = 393 Score = 53.0 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 21/106 (19%), Positives = 41/106 (38%), Gaps = 5/106 (4%) Query: 666 YISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQE 725 Y+ G P+ + + G DT W+ C E W + + SY+ + E Sbjct: 288 YLRVGQGPHPPQAVHHLPQTQLSGQDTVGWWLAACGKRVERAWVANSEIMISYANWCEA- 346 Query: 726 LNYDRKRISTRTVTLNLKQKGFIGGIKREKI--EKEWKSKRIIKGL 769 + + + V+ +L G G+ + + + K R ++GL Sbjct: 347 --HGYEPKKAKGVSQSLATHGLEIGVNKRVVDEHRRRKMARGVRGL 390 >gi|123163747|ref|XP_001279113.1| hypothetical protein [Trichomonas vaginalis G3] gi|121827803|gb|EAX66183.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 194 Score = 53.0 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 27/187 (14%), Positives = 56/187 (29%), Gaps = 15/187 (8%) Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620 + + +N+ +K + Y + + + N Sbjct: 6 CNELQSIDTTKILNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESS 65 Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679 D RRY+V+ +D + L T + + IP Sbjct: 66 D---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120 Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738 + ++ + + +ID+ + + + SL SY +Y ++ Y S RT Sbjct: 121 -EERQTLLEANKSVYELFIDE----TDFVSLDERSLYDSYKQYCQE---YGYMAASKRTF 172 Query: 739 TLNLKQK 745 N+K Sbjct: 173 LANVKSL 179 >gi|148245137|ref|YP_001219830.1| hypothetical protein CKL_4029 [Clostridium kluyveri DSM 555] gi|146337017|gb|ABQ23628.1| hypothetical protein CKL_4029 [Clostridium kluyveri DSM 555] Length = 263 Score = 53.0 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 16/106 (15%), Positives = 39/106 (36%), Gaps = 15/106 (14%) Query: 667 ISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQEL 726 + + +DIPE + + + ++D+ C+ + L ++Y ++ + E Sbjct: 172 LMQNFGIDIPEEVFETTGI-QCDM-AVKEFVDNQCEKT--GKVKIAELHETYMKWCKTEG 227 Query: 727 NYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLK 772 K ++ ++ GF + R G++LK Sbjct: 228 ---VKPLTKVKFGKEVELLGFEKAA--------FGIGRCWTGIQLK 262 >gi|123194435|ref|XP_001283062.1| hypothetical protein [Trichomonas vaginalis G3] gi|123244923|ref|XP_001288680.1| hypothetical protein [Trichomonas vaginalis G3] gi|121841695|gb|EAX70132.1| conserved hypothetical protein [Trichomonas vaginalis G3] gi|121858328|gb|EAX75750.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 194 Score = 53.0 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 27/187 (14%), Positives = 56/187 (29%), Gaps = 15/187 (8%) Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620 + + +N+ +K + Y + + + N Sbjct: 6 CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESS 65 Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679 D RRY+V+ +D + L T + + IP Sbjct: 66 D---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120 Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738 + ++ + + +ID+ + + + SL SY +Y ++ Y S RT Sbjct: 121 -EERQTLLEANKSVYELFIDE----TDFVSLDERSLYDSYKQYCQE---YGYMTASKRTF 172 Query: 739 TLNLKQK 745 N+K Sbjct: 173 LANVKSL 179 >gi|123196200|ref|XP_001283482.1| hypothetical protein [Trichomonas vaginalis G3] gi|121843040|gb|EAX70552.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 194 Score = 53.0 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 26/187 (13%), Positives = 55/187 (29%), Gaps = 15/187 (8%) Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620 + + +N+ +K + Y + + + N Sbjct: 6 CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVPNNAVPMKLESS 65 Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679 D RRY+V+ +D + L T + IP Sbjct: 66 D---RRYVVVR-TSDSHMQDTEYFDDLAETLTPNFYNHLFSYFMTLDISKFNPRQIPYT- 120 Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738 + ++ + + ++D+ + + + SL SY +Y ++ Y S RT Sbjct: 121 -EERQTLLEANKSVYELFVDE----TDFVSLDERSLYDSYKQYCQE---YGYMAASKRTF 172 Query: 739 TLNLKQK 745 N+K Sbjct: 173 LANVKNL 179 >gi|322497389|emb|CBZ32464.1| unnamed protein product [Leishmania donovani BPK282A1] Length = 545 Score = 53.0 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 26/72 (36%), Gaps = 2/72 (2%) Query: 204 QYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGS-TYDE 262 ++ + S+D W+ V +A+H+ + E R+S + Y Sbjct: 453 KWRRFKAVTAKLRTLPPRAAESYDVWVRVGLALHNFSNEDHV-FEEWVRFSLKSPLKYSR 511 Query: 263 ENFNYKWDTFDF 274 E KW F+ Sbjct: 512 EVCRKKWMQFER 523 >gi|321399110|emb|CBZ08451.1| conserved hypothetical protein [Leishmania infantum JPCM5] Length = 545 Score = 53.0 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 26/72 (36%), Gaps = 2/72 (2%) Query: 204 QYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGS-TYDE 262 ++ + S+D W+ V +A+H+ + E R+S + Y Sbjct: 453 KWRRFKAVTAKLRTLPPRAAESYDVWVRVGLALHNFSNEDHV-FEEWVRFSLKSPLKYSR 511 Query: 263 ENFNYKWDTFDF 274 E KW F+ Sbjct: 512 EVCRKKWMQFER 523 >gi|171317656|ref|ZP_02906841.1| Primase 2 [Burkholderia ambifaria MEX-5] gi|171097184|gb|EDT42034.1| Primase 2 [Burkholderia ambifaria MEX-5] Length = 953 Score = 53.0 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 2/54 (3%) Query: 224 GSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEI 277 D W V MA+ E +G + WS+ Y+ ++ W +F +I Sbjct: 17 DDRDTWSQVGMALKAEF--GEEGFALWNEWSQGAQNYNGKDARDVWKSFKGGKI 68 >gi|167618366|ref|ZP_02386997.1| inner membrane protein [Burkholderia thailandensis Bt4] Length = 958 Score = 53.0 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 2/54 (3%) Query: 224 GSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEI 277 D W V MA+ E +G + WS+ Y+ ++ W +F +I Sbjct: 22 DDRDTWSQVGMALKAEF--GEEGFALWNEWSQGAQNYNGKDARDVWKSFKGGKI 73 >gi|167567620|ref|ZP_02360536.1| inner membrane protein [Burkholderia oklahomensis EO147] gi|167569133|ref|ZP_02362007.1| inner membrane protein [Burkholderia oklahomensis C6786] Length = 953 Score = 53.0 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 2/54 (3%) Query: 224 GSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEI 277 D W V MA+ E +G + WS+ Y+ ++ W +F +I Sbjct: 17 DDRDTWSQVGMALKAEF--GEEGFALWNEWSQGAQNYNGKDARDVWKSFKGGKI 68 >gi|146080339|ref|XP_001463994.1| hypothetical protein [Leishmania infantum JPCM5] Length = 545 Score = 53.0 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 26/72 (36%), Gaps = 2/72 (2%) Query: 204 QYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGS-TYDE 262 ++ + S+D W+ V +A+H+ + E R+S + Y Sbjct: 453 KWRRFKAVTAKLRTLPPRAAESYDVWVRVGLALHNFSNEDHV-FEEWVRFSLKSPLKYSR 511 Query: 263 ENFNYKWDTFDF 274 E KW F+ Sbjct: 512 EVCRKKWMQFER 523 >gi|254181452|ref|ZP_04888049.1| conserved hypothetical protein [Burkholderia pseudomallei 1655] gi|184211990|gb|EDU09033.1| conserved hypothetical protein [Burkholderia pseudomallei 1655] Length = 953 Score = 53.0 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 2/54 (3%) Query: 224 GSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEI 277 D W V MA+ E +G + WS+ Y+ ++ W +F +I Sbjct: 17 DDRDTWSQVGMALKAEF--GEEGFALWNEWSQGAQNYNGKDARDVWKSFKGGKI 68 >gi|134294538|ref|YP_001118273.1| inner membrane protein [Burkholderia vietnamiensis G4] gi|134137695|gb|ABO53438.1| inner membrane protein [Burkholderia vietnamiensis G4] Length = 958 Score = 53.0 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 2/54 (3%) Query: 224 GSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEI 277 D W V MA+ E +G + WS+ Y+ ++ W +F +I Sbjct: 22 DDRDTWSQVGMALKAEF--GEEGFALWNEWSQGAQNYNGKDARDVWKSFKGGKI 73 >gi|322489396|emb|CBZ24655.1| conserved hypothetical protein [Leishmania mexicana MHOM/GT/2001/U1103] Length = 543 Score = 53.0 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 26/72 (36%), Gaps = 2/72 (2%) Query: 204 QYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGS-TYDE 262 ++ + S+D W+ V +A+H+ + E R+S + Y Sbjct: 451 KWRRFKAVTAKLRTLPPRAAESYDVWVRVGLALHNFSNEDHV-FEEWVRFSLKSPLKYSR 509 Query: 263 ENFNYKWDTFDF 274 E KW F+ Sbjct: 510 EVCRKKWLQFER 521 >gi|123449730|ref|XP_001313581.1| hypothetical protein [Trichomonas vaginalis G3] gi|121895470|gb|EAY00652.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 194 Score = 53.0 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 26/187 (13%), Positives = 55/187 (29%), Gaps = 15/187 (8%) Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620 + + +N+ +K + Y + + + N Sbjct: 6 CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNTVPMKLESS 65 Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679 D RRY+V+ +D + L T + + IP Sbjct: 66 D---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120 Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738 + ++ + + +ID+ + + + SL Y +Y ++ Y S RT Sbjct: 121 -EERQTLLEANKSVYELFIDE----TDFVSLDERSLYDEYKQYCQE---YGYMAASKRTF 172 Query: 739 TLNLKQK 745 N+K Sbjct: 173 LANVKNL 179 >gi|27764600|ref|NP_776223.1| hypothetical protein pCG2_1 [Corynebacterium glutamicum] gi|27657769|gb|AAO18199.1| hypothetical protein [Corynebacterium glutamicum] Length = 622 Score = 53.0 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 32/218 (14%), Positives = 60/218 (27%), Gaps = 26/218 (11%) Query: 16 NGFKLIPLRLGDKRPQRLGKWEEQLLSS-EKIDKLPACG--FGFVCGVGEQPLYAFDIDS 72 G+ + P+ +P KW + + I + G G+ L D D+ Sbjct: 16 AGWYVFPVS-QAGKPLV--KWSTEATNDPAVIATMFNGNERIGIHTGL--SGLVVVDRDN 70 Query: 73 KDEKTANTFKDTFEILHGTPIVRIGQKPKILI-PFRMNKEGIKKKKTTESTQGHLDILGC 131 K K + + + F + T +DI Sbjct: 71 KHGKNGFKALVASGKPLPATMHYTSRSGRGRHDLFIAPTDIECTVGTDVHGMQGVDIRAG 130 Query: 132 GQYFVAYN---IH-PKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKD 187 + H P TWT P + L + +L + P V Sbjct: 131 VGMIIYNGKALSHAPVLAHAPTWTILPKQESH-----LPADLSMWLSEERNPRLSPAVVK 185 Query: 188 KKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGS 225 + IP++ +N ++ A ++ + G Sbjct: 186 LIAAIPTQGVSNG--------DLMALITPIVSALWWGD 215 >gi|331004624|ref|ZP_08328088.1| hypothetical protein HMPREF0491_02950 [Lachnospiraceae oral taxon 107 str. F0167] gi|330409649|gb|EGG89086.1| hypothetical protein HMPREF0491_02950 [Lachnospiraceae oral taxon 107 str. F0167] Length = 2532 Score = 53.0 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 42/434 (9%), Positives = 111/434 (25%), Gaps = 38/434 (8%) Query: 5 QWKEQAKQAIHNGFKLIPLRLGDK--RPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGE 62 +W +P+ K + W + + K + G GF G Sbjct: 21 RWCLYKIILRDGKNTKMPIMPNGKPAKSNDRKTWHSFDDCMDALCKNHSLGLGFFLG--- 77 Query: 63 QPLYAFDIDSKDEKT---------ANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGI 113 DID ++ A+ + + + + + G Sbjct: 78 DGYIGIDIDKVSDEIMEYSMDFNAASMTANFLRGISTYAEISPSKTG-LHFI------GK 130 Query: 114 KKKKTTESTQGHLDILGCGQYFVAYN-IHPKTKKEYTWTTPPHRFKVEDT--PLLSEEDV 170 K +L+I ++F I + + P + + Sbjct: 131 GKMPGERKRYKNLEIYDRDRFFTITGNILKDKDRSKIVNINQELLPLYQIYMPSIDSVEG 190 Query: 171 EYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITA-FLSCFGEEFYNGSHDEW 229 + ++ N Y+ ++ + + F + S ++ Sbjct: 191 KAGRINLNPSSLAYKNRFSQNDILNILFNRGYFNYSGEDLRQIYNGNYQNYFNSQSEADF 250 Query: 230 IPVVMAVHHETRGSSK-------GKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAK 282 + +++ + G + + + ++GST + + + Sbjct: 251 FMLGRLLYYTADVEASISLMERGGLKRNKWYKRRGSTDYIHYIADRAMNGISKFYDWNKE 310 Query: 283 KRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVY 342 K + + K R+S + S + + K + K NN Sbjct: 311 KADIAKDIKQEETENNKKEGKMPRYSTEKIGDILSHSLEEIRRDVSAYKDFLKTMGNN-- 368 Query: 343 IWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKA 402 + + SI + + + ++ K + + + Sbjct: 369 -YKYSYMHQL-SIYSTYKRA--TACAEYDFWKKLGRSVKRGEKGIPILDLSMRLPKVNYV 424 Query: 403 KSTAQSLEAGSIFS 416 +Q++ G+ + Sbjct: 425 FDVSQTVSIGNKIN 438 >gi|323187922|gb|EFZ73217.1| zinc-binding domain of primase-helicase family protein [Escherichia coli RN587/1] Length = 770 Score = 53.0 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 40/332 (12%), Positives = 88/332 (26%), Gaps = 25/332 (7%) Query: 432 QDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF--ESEEVMDYFTRC 489 G+ + P + G V G+ S +LD + +++ Y Sbjct: 416 PGGV-GFYPRPERCPDDVYNLFTGWGVVPVPGDVSP-YLDHLEKVVCSGNKQAFVYLVGW 473 Query: 490 VGMALL-GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGK 548 + + K + ++ + G+GK T + + G V A I Sbjct: 474 LAHLVQKPDEKPSVAVVMKAIPGTGKGTTVKPVMQIMGQYGVQVNGAGQITGKFN----- 528 Query: 549 ANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFI 608 + +V E ++ A ++K + D + + P Sbjct: 529 -----ATMANKLLVFADEVTVSNSREADRLKGIISEDTINLERKGIDP-EPMPNFSRLIF 582 Query: 609 VPNKHLFVRNPDDAWW-RRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYI 667 N +R + RRY+V+ A ++ + +L + + + Sbjct: 583 ASNSEQVLR---ASIRERRYLVLEPSPEFA-QEKHYFDRLHQWIANNGAAHLMDHLLHFD 638 Query: 668 SKGLDVDIPEVCLKAKEEERQGTDTYQAWI-DDCCDIGEN---LWEESHSLAKSYSEYRE 723 D V E + +I + C + + Sbjct: 639 LSHFDPRRAPVTAGLIREILNNLPPAEGYIYAELCSPTPFRGLARLSVSEEIERFVSQCR 698 Query: 724 QELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755 + R + L G + ++ Sbjct: 699 DTGIDMTPPAARRHIGRILVAIGLERQGRSDR 730 >gi|123136133|ref|XP_001277174.1| hypothetical protein [Trichomonas vaginalis G3] gi|121820281|gb|EAX64244.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 194 Score = 53.0 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 27/187 (14%), Positives = 55/187 (29%), Gaps = 15/187 (8%) Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620 + + +N+ +K + Y + + + N Sbjct: 6 CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNTVPMKLESS 65 Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679 D RRY+V+ +D + L T + + IP Sbjct: 66 D---RRYVVVR-TSEAHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120 Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738 + ++ + + +ID+ + + SL SY +Y ++ Y S RT Sbjct: 121 -EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE---YGYMTASKRTF 172 Query: 739 TLNLKQK 745 N+K Sbjct: 173 LANVKSL 179 >gi|281426086|ref|ZP_06256999.1| conserved hypothetical protein [Prevotella oris F0302] gi|281399810|gb|EFB30641.1| conserved hypothetical protein [Prevotella oris F0302] Length = 396 Score = 53.0 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 33/206 (16%), Positives = 60/206 (29%), Gaps = 26/206 (12%) Query: 459 PFVEGEPSQEFLDLVSGYFESE-EV-MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKST 516 + L+ F + E+ MDY L K + + +GKST Sbjct: 81 NQPKEGEFPHIESLIRHIFGEQYELGMDYLQLLY---LQPVQKLPILLMVSEERNTGKST 137 Query: 517 LMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAA 576 +N +K F N N Q G ++++ E N ++ Sbjct: 138 FLNFLKAVFQNNVTFNTNEDFRSQFN-----------ADWAGKLLIVVDEVLLNRREDSE 186 Query: 577 KIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK--HLFVRNPDDA-WWRRYIVIPFD 633 ++K ++ G E + N + + + +W R I Sbjct: 187 RLKNLSTTLSYKVEAK-GKDRDEISFFAKFVLCSNNELLPVIIDVGETRYWVRKI----- 240 Query: 634 KPIANRDASFAQKLETKYTLEAKKWF 659 + + D F QKL + Sbjct: 241 NRLESDDTDFLQKL-KAEIPAFLYFL 265 >gi|323138259|ref|ZP_08073331.1| hypothetical protein Met49242DRAFT_2719 [Methylocystis sp. ATCC 49242] gi|322396511|gb|EFX99040.1| hypothetical protein Met49242DRAFT_2719 [Methylocystis sp. ATCC 49242] Length = 818 Score = 53.0 bits (125), Expect = 2e-04, Method: Composition-based stats. Identities = 44/308 (14%), Positives = 95/308 (30%), Gaps = 46/308 (14%) Query: 467 QEFLDLVSGYF-----ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVG--GSGKSTLMN 519 + ++ + Y R + A+ K + + GSGKST+ + Sbjct: 471 DKIKSFLAHLWVVIARRDRRKFKYIVRWLSWAVQNPEKRAETVIVLKSESEGSGKSTVSD 530 Query: 520 LIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIK 579 ++ FG V ++ ++I+ + A+ ++L + D A KIK Sbjct: 531 AMRVIFGKHAVSISDPAEIVGTHVDDIEFASF--VQLEEALFA-------GDPKTADKIK 581 Query: 580 QMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR 639 G + Y ++ + N V DA RR+ + +++ Sbjct: 582 HSITGATLRINPKGRKAY-QALNRLHAILTTNHAWSVPAGRDA--RRWFICE----VSDE 634 Query: 640 ---DASFAQKLETKYTLEAKKWFLKGVKAYISKGLDV-DIPEVCLKAKEEERQGTDTYQA 695 D ++ K+ L ++ ++P A+++ R + + Sbjct: 635 KVGDRAWFDKIYDDLQAGGYGQLLHYLQRKKLGSFHPRNMPRTFELAEQQIRSAS-SIHQ 693 Query: 696 WI-----------------DDCCDIGENLWEESHSLAKSY-SEYREQELNYDRKRISTRT 737 W+ + + + L +Y R Q D+K R Sbjct: 694 WLLSCAADGAIEAYERGVRKEHLQLELGADHATTKLYDAYAGAQRMQGGRVDQKIHFARM 753 Query: 738 VTLNLKQK 745 + L + Sbjct: 754 LAKILGEN 761 >gi|327309875|ref|YP_004336773.1| Bifunctional DNA primase/polymerase [Pseudonocardia dioxanivorans CB1190] gi|326955210|gb|AEA28906.1| Bifunctional DNA primase/polymerase [Pseudonocardia dioxanivorans CB1190] Length = 376 Score = 52.6 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 24/273 (8%), Positives = 51/273 (18%), Gaps = 62/273 (22%) Query: 7 KEQAKQAIHNGFKLIPLRLGDKRPQRL-----------------GKWEEQLL-SSEKIDK 48 + A A G + P++ G K P WE++ +I + Sbjct: 49 RRVALDAAAAGLFVFPVQPGGKLPAVPRHSAERCRQRGICADGHRGWEQRATRDRAQICR 108 Query: 49 L------PACGFGFVCGVGEQPLYAFDIDSK------------DEKTANTFKDTFEILHG 90 G CG + D+D+ + + Sbjct: 109 WWSGDESARFNVGIACGP--SGIVVIDLDTSTEPLDGCGGATTGREVLDQLTARHGETLP 166 Query: 91 TPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDIL-GCGQYFVAYNIHPKT----- 144 + + +RM + +++ G + + T Sbjct: 167 DTYSTMTPTDGEHLYYRMPE--------------GVELRNTHGGHGHSLGPLIDTRGGGG 212 Query: 145 ----KKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNN 200 + L + L + + Sbjct: 213 FIVGAGSIRPEGAYMVAEHGQIAELPDWLATLLTPPPPPEPRQGEPMALPTRRANAYVAA 272 Query: 201 NNRQYTNREITAFLSCFGEEFYNGSHDEWIPVV 233 T A + V Sbjct: 273 ILAGETAAVEQAPKGQRQITLLTAARTLGRLVG 305 >gi|123169758|ref|XP_001279483.1| hypothetical protein [Trichomonas vaginalis G3] gi|121829183|gb|EAX66553.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 194 Score = 52.6 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 27/187 (14%), Positives = 56/187 (29%), Gaps = 15/187 (8%) Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620 + + +N+ +K + Y + + + N Sbjct: 6 CNELQSIDTQKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESS 65 Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679 D RRY+V+ +D + L T + + IP Sbjct: 66 D---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120 Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738 + ++ + + +ID+ + + + SL SY +Y ++ Y S RT Sbjct: 121 -EERQTLLEANKSVYELFIDE----TDFVSLDERSLYDSYKQYCQE---YGYMAASKRTF 172 Query: 739 TLNLKQK 745 N+K Sbjct: 173 LANVKSL 179 >gi|167463641|ref|ZP_02328730.1| RecA-family ATPase [Paenibacillus larvae subsp. larvae BRL-230010] Length = 750 Score = 52.6 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 36/220 (16%), Positives = 70/220 (31%), Gaps = 24/220 (10%) Query: 209 EITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGST-YDEENFNY 267 ++ A L + S+ +W+ V MA+ +E +S WSK+ ST Y Sbjct: 6 DLVALLEYIDPSYL--SYQDWVAVGMALKYEGYTASD----WDDWSKRDSTRYHPGECFK 59 Query: 268 KWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYT 327 KW TF+ T ++ + S D Y Sbjct: 60 KWSTFEGTGT------PITGATITQMAKDNGW--MPRSTHQDDRELDWNDEITGD---YV 108 Query: 328 ADTKAWYK-KDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNN-KNSKSPRF 385 + W + K+ + +W+ + + + L E+V + + +++ K + Sbjct: 109 VIDRNWIEGKEIHEPNVWNPV--QQLTTYLETLFEASENVGYVVDTWQNDEGKYLPTKGA 166 Query: 386 WFNTDYRRQNVEE--NSKAKSTAQSLEAGSIFSITSDLLD 423 W + + N S + I + LD Sbjct: 167 WDRSAGELIQLLNQCNGDIGSVLGDYNPEAGAWIRFNPLD 206 >gi|123231022|ref|XP_001286218.1| hypothetical protein [Trichomonas vaginalis G3] gi|121851323|gb|EAX73288.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 194 Score = 52.6 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 27/187 (14%), Positives = 55/187 (29%), Gaps = 15/187 (8%) Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620 + + +N+ +K + Y + + + N Sbjct: 6 CNELQSIDTTKVLNSDALKSLITDKVGVVERKYRDQRVCENVANFVMVSNNAVPMKLESS 65 Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679 D RRY+V+ +D + L T + + IP Sbjct: 66 D---RRYVVVR-TSEAHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120 Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738 + ++ + + +ID+ + + SL SY +Y ++ Y S RT Sbjct: 121 -EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE---YGYMAASKRTF 172 Query: 739 TLNLKQK 745 N+K Sbjct: 173 LANVKNL 179 >gi|18450234|ref|NP_569125.1| hypothetical protein pGO128_p3 [Gluconobacter oxydans] gi|18378116|emb|CAD21834.1| hypothetical protein [Gluconobacter oxydans] Length = 416 Score = 52.6 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 29/177 (16%), Positives = 54/177 (30%), Gaps = 19/177 (10%) Query: 462 EGEPSQEFLDLVSGYFESEEV-------MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGK 514 E + Q + + +E+ + V + G K + G G K Sbjct: 129 EWDGVQRLDTWLHDFLGAEDSEYTAGVGRLFLIGMVARVMEPGCKNDHVLIFEGNQGIRK 188 Query: 515 STLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEIN 574 ST ++ G++Y + PP + L G +V ++E + + Sbjct: 189 STACKVLAG--GSRY--------FSDSLPPIREGSKDLASHLAGKWLVEVAEMSAASRAD 238 Query: 575 AAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIP 631 +K T R YG P N+ ++R+ RR + Sbjct: 239 TEALKAFLTRTHETYRPAYGRNEITQPRQCVLVGTTNRKEYLRDSTGD--RRVWPVK 293 >gi|154411914|ref|XP_001578991.1| hypothetical protein [Trichomonas vaginalis G3] gi|121913193|gb|EAY18005.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 194 Score = 52.6 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 27/187 (14%), Positives = 55/187 (29%), Gaps = 15/187 (8%) Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620 + + +N+ +K + Y + + + N Sbjct: 6 CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESS 65 Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679 D RRY+V+ +D + L T + + IP Sbjct: 66 D---RRYVVVR-TSEAHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120 Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738 + ++ + + +ID+ + + SL SY +Y ++ Y S RT Sbjct: 121 -EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE---YGYMTASKRTF 172 Query: 739 TLNLKQK 745 N+K Sbjct: 173 LANVKSL 179 >gi|123366212|ref|XP_001296554.1| hypothetical protein [Trichomonas vaginalis G3] gi|121876208|gb|EAX83624.1| hypothetical protein TVAG_102920 [Trichomonas vaginalis G3] Length = 194 Score = 52.6 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 26/187 (13%), Positives = 55/187 (29%), Gaps = 15/187 (8%) Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620 + + +N+ +K + Y + + + N Sbjct: 6 CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNVVPMKLESS 65 Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679 D RRY+V+ +D + L T + + IP Sbjct: 66 D---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120 Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738 + ++ + + +I++ + + SL SY +Y ++ Y S RT Sbjct: 121 -EERQTLLEANKSVYELFIEE----SDFECLDERSLYDSYKQYCQE---YGYMAASKRTF 172 Query: 739 TLNLKQK 745 N+K Sbjct: 173 LANVKSL 179 >gi|123225789|ref|XP_001285793.1| hypothetical protein [Trichomonas vaginalis G3] gi|121850041|gb|EAX72863.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 194 Score = 52.6 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 27/187 (14%), Positives = 56/187 (29%), Gaps = 15/187 (8%) Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620 + + +N+ +K + Y + + + N Sbjct: 6 CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNVVPMKLESS 65 Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679 D RRY+V+ +D + L T + + IP Sbjct: 66 D---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120 Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738 + ++ + + +ID+ + + + SL SY +Y ++ Y S RT Sbjct: 121 -EERQTLLEANKSVYELFIDE----TDFVSLDERSLYDSYKQYCQE---YGYMAASKRTF 172 Query: 739 TLNLKQK 745 N+K Sbjct: 173 LANVKSL 179 >gi|325266444|ref|ZP_08133121.1| conjugal transfer mating pair stabilization protein TraN [Kingella denitrificans ATCC 33394] gi|324981887|gb|EGC17522.1| conjugal transfer mating pair stabilization protein TraN [Kingella denitrificans ATCC 33394] Length = 1854 Score = 52.6 bits (124), Expect = 2e-04, Method: Composition-based stats. Identities = 12/53 (22%), Positives = 21/53 (39%), Gaps = 2/53 (3%) Query: 225 SHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEI 277 + W V A+ E +G WS+ ++E N +W +F + I Sbjct: 23 DRETWWKVGAALKSEFDEGGRGL--WEDWSRSYPKWNERESNAQWKSFKYGHI 73 >gi|123206048|ref|XP_001284824.1| hypothetical protein [Trichomonas vaginalis G3] gi|121847126|gb|EAX71894.1| hypothetical protein TVAG_084990 [Trichomonas vaginalis G3] Length = 194 Score = 52.6 bits (124), Expect = 3e-04, Method: Composition-based stats. Identities = 29/191 (15%), Positives = 55/191 (28%), Gaps = 23/191 (12%) Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620 + + +N+ +K + Y + + + N Sbjct: 6 CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNVVPMKLESS 65 Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679 D RRY+V+ +D + L T + + IP Sbjct: 66 D---RRYVVVR-TSEAHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120 Query: 680 LKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIS 734 + ++ + + +ID +C D SL SY +Y ++ Y S Sbjct: 121 -EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDSYKQYCQE---YGYMAAS 168 Query: 735 TRTVTLNLKQK 745 RT N+K Sbjct: 169 KRTFLANVKSL 179 >gi|123318758|ref|XP_001293041.1| hypothetical protein [Trichomonas vaginalis G3] gi|121869356|gb|EAX80111.1| hypothetical protein TVAG_041770 [Trichomonas vaginalis G3] Length = 194 Score = 52.6 bits (124), Expect = 3e-04, Method: Composition-based stats. Identities = 26/187 (13%), Positives = 55/187 (29%), Gaps = 15/187 (8%) Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620 + + +N+ +K + Y + + + N Sbjct: 6 CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNVVPMKLESS 65 Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679 D RRY+V+ +D + L T + + IP Sbjct: 66 D---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120 Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738 + ++ + + +I++ + + SL SY +Y ++ Y S RT Sbjct: 121 -EERQTLLEANKSVYELFIEE----SDFECLDERSLYDSYKQYCQE---YGYMAASKRTF 172 Query: 739 TLNLKQK 745 N+K Sbjct: 173 LANVKSL 179 >gi|303236684|ref|ZP_07323265.1| conserved hypothetical protein [Prevotella disiens FB035-09AN] gi|302483188|gb|EFL46202.1| conserved hypothetical protein [Prevotella disiens FB035-09AN] Length = 396 Score = 52.6 bits (124), Expect = 3e-04, Method: Composition-based stats. Identities = 37/233 (15%), Positives = 68/233 (29%), Gaps = 27/233 (11%) Query: 433 DGILDLETGQKVKPTKELYITKSTGTPFVEGE-PSQEFLDLVSGYFESE-EV-MDYFTRC 489 DG + +P + ++ E L+S F + E+ MDY Sbjct: 54 DGFCTVPNHVNYQPVIDKFLNLYEPIGHQPKEGEFPHVESLISHIFGEQYELGMDYLQLL 113 Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549 L K + + +GKST +N +K F N + ++ + Sbjct: 114 Y---LQPVQKLPILLMVSEERNTGKSTFLNFLKAVF-----QNNVTFNTNEDFRSQFNS- 164 Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609 G ++++ E N ++ ++K ++ G E + Sbjct: 165 -----DWAGKLLIVVDEVLLNRREDSERLKNLSTTLSYKVEAK-GKDRDEISFFAKFVLC 218 Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDKPIAN---RDASFAQKLETKYTLEAKKWF 659 N L D R + + I D F QKL + Sbjct: 219 SNNELLPVIIDVGETR-----YWVRKIERLKSDDTDFLQKL-KAEIPAFLYFL 265 >gi|123268667|ref|XP_001289652.1| hypothetical protein [Trichomonas vaginalis G3] gi|121860998|gb|EAX76722.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 194 Score = 52.6 bits (124), Expect = 3e-04, Method: Composition-based stats. Identities = 27/187 (14%), Positives = 56/187 (29%), Gaps = 15/187 (8%) Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620 + + +N+ +K + Y + + + N Sbjct: 6 CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESS 65 Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679 D RRY+V+ +D + L T + + IP Sbjct: 66 D---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120 Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738 + ++ + + +ID+ + + + SL SY +Y ++ Y S RT Sbjct: 121 -EERQTLLEANKSVYELFIDE----TDFVSLDERSLYDSYKQYCQE---YGYMTASKRTF 172 Query: 739 TLNLKQK 745 N+K Sbjct: 173 LANVKSL 179 >gi|332843882|ref|XP_510432.3| PREDICTED: DNA-binding protein RFX7 isoform 2 [Pan troglodytes] Length = 1460 Score = 52.6 bits (124), Expect = 3e-04, Method: Composition-based stats. Identities = 18/96 (18%), Positives = 29/96 (30%), Gaps = 6/96 (6%) Query: 680 LKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVT 739 A R +WI + + + Y Y + N +S Sbjct: 95 QNAMSSSRAQQMHAFSWIRNTLEEHPETSLPKQEVYDEYKSYCD---NLGYHPLSAADFG 151 Query: 740 LNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAF 775 +K +K ++ KSK GL+ K AF Sbjct: 152 KIMKN--VFPNMKARRLGTRGKSKYCYSGLR-KKAF 184 >gi|297296511|ref|XP_001090581.2| PREDICTED: DNA-binding protein RFX7 isoform 2 [Macaca mulatta] Length = 1459 Score = 52.6 bits (124), Expect = 3e-04, Method: Composition-based stats. Identities = 18/96 (18%), Positives = 29/96 (30%), Gaps = 6/96 (6%) Query: 680 LKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVT 739 A R +WI + + + Y Y + N +S Sbjct: 95 QNAMSSSRAQQMHAFSWIRNTLEEHPETSLPKQEVYDEYKSYCD---NLGYHPLSAADFG 151 Query: 740 LNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAF 775 +K +K ++ KSK GL+ K AF Sbjct: 152 KIMKN--VFPNMKARRLGTRGKSKYCYSGLR-KKAF 184 >gi|291561295|emb|CBL40094.1| Primase C terminal 1 (PriCT-1)./Bifunctional DNA primase/polymerase, N-terminal [butyrate-producing bacterium SS3/4] Length = 262 Score = 52.6 bits (124), Expect = 3e-04, Method: Composition-based stats. Identities = 16/125 (12%), Positives = 35/125 (28%), Gaps = 11/125 (8%) Query: 19 KLIPLRLGDKRPQR---LGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDID-SKD 74 IP++ +K+ W + ++ GFV + L DID + Sbjct: 24 SKIPMKAFEKKAASSTAPDTWSSFEQAEWAVENGYYDNLGFVF--ADNGLVGIDIDAGFE 81 Query: 75 EKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQY 134 + + + + I R K + ++I ++ Sbjct: 82 DGLMTPLCADIMTACKSYTEKSRSGRGVHILLRGTLPFHGK-----NNLAGVEIYKARRF 136 Query: 135 FVAYN 139 F+ Sbjct: 137 FIMTG 141 >gi|291402954|ref|XP_002717768.1| PREDICTED: regulatory factor X domain containing 2 [Oryctolagus cuniculus] Length = 1461 Score = 52.6 bits (124), Expect = 3e-04, Method: Composition-based stats. Identities = 18/96 (18%), Positives = 29/96 (30%), Gaps = 6/96 (6%) Query: 680 LKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVT 739 A R +WI + + + Y Y + N +S Sbjct: 95 QNAMSSSRAQQMHAFSWIRNTLEEHPETSLPKQEVYDEYKSYCD---NLGYHPLSAADFG 151 Query: 740 LNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAF 775 +K +K ++ KSK GL+ K AF Sbjct: 152 KIMKN--VFPNMKARRLGTRGKSKYCYSGLR-KKAF 184 >gi|219521445|gb|AAI43439.1| RFX7 protein [Homo sapiens] Length = 1292 Score = 52.6 bits (124), Expect = 3e-04, Method: Composition-based stats. Identities = 18/96 (18%), Positives = 29/96 (30%), Gaps = 6/96 (6%) Query: 680 LKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVT 739 A R +WI + + + Y Y + N +S Sbjct: 14 QNAMSSSRAQQMHAFSWIRNTLEEHPETSLPKQEVYDEYKSYCD---NLGYHPLSAADFG 70 Query: 740 LNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAF 775 +K +K ++ KSK GL+ K AF Sbjct: 71 KIMKN--VFPNMKARRLGTRGKSKYCYSGLR-KKAF 103 >gi|300796622|ref|NP_001179749.1| DNA-binding protein RFX7 [Bos taurus] gi|297479654|ref|XP_002690932.1| PREDICTED: regulatory factor X, 7 [Bos taurus] gi|296483180|gb|DAA25295.1| regulatory factor X, 7 [Bos taurus] Length = 1461 Score = 52.6 bits (124), Expect = 3e-04, Method: Composition-based stats. Identities = 18/96 (18%), Positives = 29/96 (30%), Gaps = 6/96 (6%) Query: 680 LKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVT 739 A R +WI + + + Y Y + N +S Sbjct: 95 QNAMSSSRAQQMHAFSWIRNTLEEHPETSLPKQEVYDEYKSYCD---NLGYHPLSAADFG 151 Query: 740 LNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAF 775 +K +K ++ KSK GL+ K AF Sbjct: 152 KIMKN--VFPNMKARRLGTRGKSKYCYSGLR-KKAF 184 >gi|148613886|ref|NP_073752.5| DNA-binding protein RFX7 [Homo sapiens] Length = 1460 Score = 52.6 bits (124), Expect = 3e-04, Method: Composition-based stats. Identities = 18/96 (18%), Positives = 29/96 (30%), Gaps = 6/96 (6%) Query: 680 LKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVT 739 A R +WI + + + Y Y + N +S Sbjct: 95 QNAMSSSRAQQMHAFSWIRNTLEEHPETSLPKQEVYDEYKSYCD---NLGYHPLSAADFG 151 Query: 740 LNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAF 775 +K +K ++ KSK GL+ K AF Sbjct: 152 KIMKN--VFPNMKARRLGTRGKSKYCYSGLR-KKAF 184 >gi|149691918|ref|XP_001500788.1| PREDICTED: regulatory factor X domain containing 2 [Equus caballus] Length = 1459 Score = 52.6 bits (124), Expect = 3e-04, Method: Composition-based stats. Identities = 18/96 (18%), Positives = 29/96 (30%), Gaps = 6/96 (6%) Query: 680 LKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVT 739 A R +WI + + + Y Y + N +S Sbjct: 95 QNAMSSSRAQQMHAFSWIRNTLEEHPETSLPKQEVYDEYKSYCD---NLGYHPLSAADFG 151 Query: 740 LNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAF 775 +K +K ++ KSK GL+ K AF Sbjct: 152 KIMKN--VFPNMKARRLGTRGKSKYCYSGLR-KKAF 184 >gi|149028792|gb|EDL84133.1| similar to hypothetical protein FLJ12994 (predicted), isoform CRA_a [Rattus norvegicus] Length = 1378 Score = 52.6 bits (124), Expect = 3e-04, Method: Composition-based stats. Identities = 18/96 (18%), Positives = 29/96 (30%), Gaps = 6/96 (6%) Query: 680 LKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVT 739 A R +WI + + + Y Y + N +S Sbjct: 95 QNAMSSSRAQQMHAFSWIRNTLEEHPETSLPKQEVYDEYKSYCD---NLGYHPLSAADFG 151 Query: 740 LNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAF 775 +K +K ++ KSK GL+ K AF Sbjct: 152 KIMKN--VFPNMKARRLGTRGKSKYCYSGLR-KKAF 184 >gi|149028793|gb|EDL84134.1| similar to hypothetical protein FLJ12994 (predicted), isoform CRA_b [Rattus norvegicus] gi|165970890|gb|AAI58677.1| Rfx7 protein [Rattus norvegicus] Length = 297 Score = 52.6 bits (124), Expect = 3e-04, Method: Composition-based stats. Identities = 18/96 (18%), Positives = 29/96 (30%), Gaps = 6/96 (6%) Query: 680 LKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVT 739 A R +WI + + + Y Y + N +S Sbjct: 95 QNAMSSSRAQQMHAFSWIRNTLEEHPETSLPKQEVYDEYKSYCD---NLGYHPLSAADFG 151 Query: 740 LNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAF 775 +K +K ++ KSK GL+ K AF Sbjct: 152 KIMKN--VFPNMKARRLGTRGKSKYCYSGLR-KKAF 184 >gi|148694315|gb|EDL26262.1| mCG131701, isoform CRA_a [Mus musculus] Length = 1378 Score = 52.6 bits (124), Expect = 3e-04, Method: Composition-based stats. Identities = 18/96 (18%), Positives = 29/96 (30%), Gaps = 6/96 (6%) Query: 680 LKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVT 739 A R +WI + + + Y Y + N +S Sbjct: 95 QNAMSSSRAQQMHAFSWIRNTLEEHPETSLPKQEVYDEYKSYCD---NLGYHPLSAADFG 151 Query: 740 LNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAF 775 +K +K ++ KSK GL+ K AF Sbjct: 152 KIMKN--VFPNMKARRLGTRGKSKYCYSGLR-KKAF 184 >gi|123202727|ref|XP_001284149.1| hypothetical protein [Trichomonas vaginalis G3] gi|121845071|gb|EAX71219.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 194 Score = 52.6 bits (124), Expect = 3e-04, Method: Composition-based stats. Identities = 27/187 (14%), Positives = 55/187 (29%), Gaps = 15/187 (8%) Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620 + + +N+ +K + Y + + + N Sbjct: 6 CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNTVPMKLESS 65 Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679 D RRY+V+ +D + L T + + IP Sbjct: 66 D---RRYVVVR-TSDSHMQDTEYFDDLAESLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120 Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738 + ++ + + +ID+ + + SL SY +Y ++ Y S RT Sbjct: 121 -EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE---YGYMAASKRTF 172 Query: 739 TLNLKQK 745 N+K Sbjct: 173 LANVKSL 179 >gi|74213029|dbj|BAE41660.1| unnamed protein product [Mus musculus] gi|148694316|gb|EDL26263.1| mCG131701, isoform CRA_b [Mus musculus] Length = 291 Score = 52.6 bits (124), Expect = 3e-04, Method: Composition-based stats. Identities = 18/96 (18%), Positives = 29/96 (30%), Gaps = 6/96 (6%) Query: 680 LKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVT 739 A R +WI + + + Y Y + N +S Sbjct: 95 QNAMSSSRAQQMHAFSWIRNTLEEHPETSLPKQEVYDEYKSYCD---NLGYHPLSAADFG 151 Query: 740 LNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAF 775 +K +K ++ KSK GL+ K AF Sbjct: 152 KIMKN--VFPNMKARRLGTRGKSKYCYSGLR-KKAF 184 >gi|88703055|ref|NP_001028708.1| regulatory factor X domain containing 2 [Mus musculus] gi|162319108|gb|AAI56262.1| Regulatory factor X, 7 [synthetic construct] Length = 1459 Score = 52.6 bits (124), Expect = 3e-04, Method: Composition-based stats. Identities = 18/96 (18%), Positives = 29/96 (30%), Gaps = 6/96 (6%) Query: 680 LKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVT 739 A R +WI + + + Y Y + N +S Sbjct: 95 QNAMSSSRAQQMHAFSWIRNTLEEHPETSLPKQEVYDEYKSYCD---NLGYHPLSAADFG 151 Query: 740 LNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAF 775 +K +K ++ KSK GL+ K AF Sbjct: 152 KIMKN--VFPNMKARRLGTRGKSKYCYSGLR-KKAF 184 >gi|188595675|ref|NP_001120962.1| regulatory factor X domain containing 2 [Rattus norvegicus] Length = 1459 Score = 52.6 bits (124), Expect = 3e-04, Method: Composition-based stats. Identities = 18/96 (18%), Positives = 29/96 (30%), Gaps = 6/96 (6%) Query: 680 LKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVT 739 A R +WI + + + Y Y + N +S Sbjct: 95 QNAMSSSRAQQMHAFSWIRNTLEEHPETSLPKQEVYDEYKSYCD---NLGYHPLSAADFG 151 Query: 740 LNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAF 775 +K +K ++ KSK GL+ K AF Sbjct: 152 KIMKN--VFPNMKARRLGTRGKSKYCYSGLR-KKAF 184 >gi|74189197|dbj|BAC41187.2| unnamed protein product [Mus musculus] Length = 309 Score = 52.6 bits (124), Expect = 3e-04, Method: Composition-based stats. Identities = 18/96 (18%), Positives = 29/96 (30%), Gaps = 6/96 (6%) Query: 680 LKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVT 739 A R +WI + + + Y Y + N +S Sbjct: 95 QNAMSSSRAQQMHAFSWIRNTLEEHPETSLPKQEVYDEYKSYCD---NLGYHPLSAADFG 151 Query: 740 LNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAF 775 +K +K ++ KSK GL+ K AF Sbjct: 152 KIMKN--VFPNMKARRLGTRGKSKYCYSGLR-KKAF 184 >gi|219684051|ref|YP_002470433.1| hypothetical protein CKR_P23 [Clostridium kluyveri NBRC 12016] gi|219570559|dbj|BAH08542.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 273 Score = 52.6 bits (124), Expect = 3e-04, Method: Composition-based stats. Identities = 16/106 (15%), Positives = 39/106 (36%), Gaps = 15/106 (14%) Query: 667 ISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQEL 726 + + +DIPE + + + ++D+ C+ + L ++Y ++ + E Sbjct: 182 LMQNFGIDIPEEVFETTGI-QCDM-AVKEFVDNQCEKT--GKVKIAELHETYMKWCKTEG 237 Query: 727 NYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLK 772 K ++ ++ GF + R G++LK Sbjct: 238 ---VKPLTKVKFGKEVELLGFEKAA--------FGIGRCWTGIQLK 272 >gi|107023303|ref|YP_621630.1| inner membrane protein [Burkholderia cenocepacia AU 1054] gi|116690386|ref|YP_836009.1| inner membrane protein [Burkholderia cenocepacia HI2424] gi|105893492|gb|ABF76657.1| inner membrane protein [Burkholderia cenocepacia AU 1054] gi|116648475|gb|ABK09116.1| inner membrane protein [Burkholderia cenocepacia HI2424] Length = 958 Score = 52.6 bits (124), Expect = 3e-04, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 2/54 (3%) Query: 224 GSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEI 277 D W V MA+ E +G + WS+ Y+ ++ W +F +I Sbjct: 22 DDRDTWSQVGMALKAEF--GEEGFALWNEWSQGAQNYNVKDARDVWKSFKGGKI 73 >gi|167736508|ref|ZP_02409282.1| hypothetical protein Bpse14_00515 [Burkholderia pseudomallei 14] Length = 953 Score = 52.6 bits (124), Expect = 3e-04, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 22/66 (33%), Gaps = 2/66 (3%) Query: 212 AFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDT 271 S D W MA+ E +G + WS+ Y+ ++ W + Sbjct: 5 ERASVALGYVPADDRDTWRQAGMALKAEF--GEEGFTLWNEWSQGAQNYNAKDARDVWKS 62 Query: 272 FDFEEI 277 F +I Sbjct: 63 FKGGKI 68 >gi|123239629|ref|XP_001287655.1| hypothetical protein [Trichomonas vaginalis G3] gi|121855471|gb|EAX74725.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 211 Score = 52.6 bits (124), Expect = 3e-04, Method: Composition-based stats. Identities = 31/201 (15%), Positives = 62/201 (30%), Gaps = 15/201 (7%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T + Sbjct: 69 MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDALSECLTSDFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724 + IP + ++ + + +ID+ + + + SL SY +Y ++ Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFVSLDERSLYDSYKQYCQE 178 Query: 725 ELNYDRKRISTRTVTLNLKQK 745 Y S RT N+K Sbjct: 179 ---YGYMSASKRTFLANVKSL 196 >gi|254555657|ref|YP_003062074.1| prophage Lp3 protein 7 [Lactobacillus plantarum JDM1] gi|254044584|gb|ACT61377.1| prophage Lp3 protein 7 [Lactobacillus plantarum JDM1] Length = 264 Score = 52.6 bits (124), Expect = 3e-04, Method: Composition-based stats. Identities = 30/209 (14%), Positives = 60/209 (28%), Gaps = 29/209 (13%) Query: 9 QAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQL-LSSEKIDKL----PACGFGFVCGVGEQ 63 A + GF ++P+ K+P K+ +Q L+ ++I P Sbjct: 7 YAVRYAQAGFSVLPMI--GKKPMI--KFADQPALTIDQIQSYWRSHPYAQLALRT----T 58 Query: 64 PLYAFDIDSKDEKTANTFKDTFEILHGTPIVRI----GQKPKILIPFRMNKEGIKKKKTT 119 + DID + A+ FK + + + + + + + Sbjct: 59 NFFVIDID-EHPGGADGFKSIADYPNPEYLRDTLSQATAGGGRQLFYLKRDDCA--IQQR 115 Query: 120 ESTQGHLDILGC-GQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQ 178 +DI Y + + K Y W E V+ + + Sbjct: 116 IGWLPGVDIKAHVNNYVMVAPSE-RNGKLYQWEN------HNPIVTAPRELVQAI-NANR 167 Query: 179 EITVPLVKDKKSIIPSKTWTNNNNRQYTN 207 + TV + D K+ T + Sbjct: 168 DDTVDVFTDLNIDYTEKSGTATLFETIVD 196 >gi|123204829|ref|XP_001284525.1| hypothetical protein [Trichomonas vaginalis G3] gi|121846208|gb|EAX71595.1| hypothetical protein TVAG_510200 [Trichomonas vaginalis G3] Length = 194 Score = 52.6 bits (124), Expect = 3e-04, Method: Composition-based stats. Identities = 29/191 (15%), Positives = 54/191 (28%), Gaps = 23/191 (12%) Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620 + + +N+ +K + Y + + + N Sbjct: 6 CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFVMVSNNVVPMKLESS 65 Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679 D RRY+V+ +D + L T + IP Sbjct: 66 D---RRYVVVR-TSDSHMQDTEYFDDLAETLTPNFYNHLFSYFMTLDISKFNPRQIPYT- 120 Query: 680 LKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIS 734 + ++ + + +ID +C D SL SY +Y ++ Y S Sbjct: 121 -EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDSYKQYCQE---YGYMTAS 168 Query: 735 TRTVTLNLKQK 745 RT N+K Sbjct: 169 KRTFLANVKNL 179 >gi|167518862|ref|XP_001743771.1| hypothetical protein [Monosiga brevicollis MX1] gi|163777733|gb|EDQ91349.1| predicted protein [Monosiga brevicollis MX1] Length = 589 Score = 52.6 bits (124), Expect = 3e-04, Method: Composition-based stats. Identities = 41/260 (15%), Positives = 74/260 (28%), Gaps = 54/260 (20%) Query: 467 QEFLDLVSGYF--ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524 Q L + + +Y + G K Q + + G GG GKS L L++ Sbjct: 148 QYILGFIKDIICGGYAQQDEYILNWLSCTAAG-VKVQTHLLMEGDGGEGKSLLCELMREI 206 Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGG 584 G +Y + ++ Q G++ L + +N + +K +T Sbjct: 207 LGARYYSTSNVEEVCQYTSNFEGRSLIVLEEMP-------VSSNSSKRGFTDALKSLTTE 259 Query: 585 DCMTARLNYGNTYSESPASFTPFIVPNK-----------------HLFVRNPDDAWWRRY 627 R + Y +S +F + N R D ++ R Sbjct: 260 SVFACRRMHNQAYQQSN-TFNIIVNSNHSAEELTQTNKRRAVAFDISRKRVGDVEYYNRL 318 Query: 628 IVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGV-KAY----------ISKGLDVDIP 676 K I ++D A L G+ K + + L +P Sbjct: 319 H-----KYICDKDVQLAFYLFLMSRF-------DGMPKDWTGNEVPMSIKRREKLTRSLP 366 Query: 677 EVCLKAKEEE---RQGTDTY 693 E ++ D Sbjct: 367 PSIKFLIEHYVLPKRDIDNL 386 >gi|330445050|ref|ZP_08308703.1| primase C terminal 2 family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328489241|dbj|GAA03200.1| primase C terminal 2 family protein [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 1216 Score = 52.6 bits (124), Expect = 3e-04, Method: Composition-based stats. Identities = 15/88 (17%), Positives = 36/88 (40%), Gaps = 9/88 (10%) Query: 226 HDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRS 285 +++W + +++ E ++ ++ WS Q S+YD++ F W +F ++ Sbjct: 26 YNDWAKLGRSLYSEYGDDAR--DMFELWSAQSSSYDKKEFQSHWRSFRKTR-------KT 76 Query: 286 TFTSLFYHHGKLIPKGLLASRFSDAYNK 313 F S Y + K ++ + Sbjct: 77 NFGSFIYMAIEAGWKPERKELTAEEKAE 104 >gi|288928586|ref|ZP_06422433.1| conserved hypothetical protein [Prevotella sp. oral taxon 317 str. F0108] gi|288331420|gb|EFC70004.1| conserved hypothetical protein [Prevotella sp. oral taxon 317 str. F0108] Length = 415 Score = 52.6 bits (124), Expect = 3e-04, Method: Composition-based stats. Identities = 29/194 (14%), Positives = 58/194 (29%), Gaps = 24/194 (12%) Query: 467 QEFLDLVSGYFESE-EV-MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524 L F + E+ MDY L K + + +GKST +N +K Sbjct: 106 PHIEALARHIFGEQYELGMDYLQLLY---LYPIEKLPILLLVSEERNTGKSTFLNFLKAL 162 Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGG 584 FGN N Q G ++++ E + ++ ++K ++ Sbjct: 163 FGNNVTFNTNEDFRSQFN-----------SDWAGKLLILVDEALLDRREDSERLKNLSTT 211 Query: 585 DCMTARLNYGN-TYSESPASFTPFIVPNKHLFVRNPDDA-WWRRYIVIPFDKPIANRDAS 642 + A F + + + + +W R + I D Sbjct: 212 LSYKVEAKGKDRDEISFFAKFVLCSNNERLPVIIDAGETRYWVRKV-----GRIEKDDTD 266 Query: 643 FAQKLETKYTLEAK 656 F +++ + Sbjct: 267 FLKRI-KEEIPAFL 279 >gi|213028729|ref|ZP_03343176.1| bacteriophage P4 DNA primase [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 167 Score = 52.6 bits (124), Expect = 3e-04, Method: Composition-based stats. Identities = 24/183 (13%), Positives = 46/183 (25%), Gaps = 45/183 (24%) Query: 611 NKHLFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEAKKWFLKGVKAYIS 668 N + + RR ++I F + I RD K+ + ++ Sbjct: 1 NNPMRFTDRSGGVSRRRVIIHFPEQIAPEERDPQLRDKIAR-ELAIIVRQLMQ------- 52 Query: 669 KGLDVDIPEVCLKAKEEE---------RQGTDTY--------------QAWIDDCCDIGE 705 P + + ++ D ++ + I Sbjct: 53 ---KFSDPMTARTLLQSQQNSDEALSIKRDADPTFDFCGYLEMLPQTNGMFMGNASIIPR 109 Query: 706 NLWEESHSLAKSYSEYREQELNYDRKRISTRTVT----LNLKQKGFIGGIKREKIEKEWK 761 N L +Y Y E R +S + + LK+ G + K Sbjct: 110 NYR---KYLYHAYLAYMEANGY--RNVLSLKMFGLGLPMMLKEYGLNYEKRHTKRGDNKP 164 Query: 762 SKR 764 R Sbjct: 165 ICR 167 >gi|301775138|ref|XP_002922988.1| PREDICTED: DNA-binding protein RFX7-like [Ailuropoda melanoleuca] Length = 1460 Score = 52.2 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 18/96 (18%), Positives = 29/96 (30%), Gaps = 6/96 (6%) Query: 680 LKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVT 739 A R +WI + + + Y Y + N +S Sbjct: 95 QNAVSSSRAQQMHAFSWIRNTLEEHPETSLPKQEVYDEYKSYCD---NLGYHPLSAADFG 151 Query: 740 LNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAF 775 +K +K ++ KSK GL+ K AF Sbjct: 152 KIMKN--VFPNMKARRLGTRGKSKYCYSGLR-KKAF 184 >gi|123237259|ref|XP_001287130.1| hypothetical protein [Trichomonas vaginalis G3] gi|121853976|gb|EAX74200.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 188 Score = 52.2 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 27/186 (14%), Positives = 55/186 (29%), Gaps = 15/186 (8%) Query: 562 VIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDD 621 + + +N+ +K + Y + + + N D Sbjct: 1 NELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESSD 60 Query: 622 AWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVCL 680 RRY+V+ +D + L T + + IP Sbjct: 61 ---RRYVVVR-TSEAHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT-- 114 Query: 681 KAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVT 739 + ++ + + +ID+ + + SL SY +Y ++ Y S RT Sbjct: 115 EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE---YGYMTASKRTFL 167 Query: 740 LNLKQK 745 N+K Sbjct: 168 ANVKSL 173 >gi|123229211|ref|XP_001286063.1| hypothetical protein [Trichomonas vaginalis G3] gi|121850859|gb|EAX73133.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 194 Score = 52.2 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 26/187 (13%), Positives = 55/187 (29%), Gaps = 15/187 (8%) Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620 + + +N+ +K + Y + + + N Sbjct: 6 CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESS 65 Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679 D RRY+V+ +D + L T + + IP Sbjct: 66 D---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120 Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738 + ++ + + +ID+ + + + SL Y +Y ++ Y S RT Sbjct: 121 -EERQTLLEANKSVYELFIDE----TDFVSLDERSLYDEYKQYCQE---YGYMAASKRTF 172 Query: 739 TLNLKQK 745 N+K Sbjct: 173 LANVKSL 179 >gi|74000781|ref|XP_544696.2| PREDICTED: similar to regulatory factor X, 5 isoform 1 [Canis familiaris] Length = 1460 Score = 52.2 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 18/96 (18%), Positives = 29/96 (30%), Gaps = 6/96 (6%) Query: 680 LKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVT 739 A R +WI + + + Y Y + N +S Sbjct: 95 QNAVSSSRAQQMHAFSWIRNTLEEHPETSLPKQEVYDEYKSYCD---NLGYHPLSAADFG 151 Query: 740 LNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAF 775 +K +K ++ KSK GL+ K AF Sbjct: 152 KIMKN--VFPNMKARRLGTRGKSKYCYSGLR-KKAF 184 >gi|289643690|ref|ZP_06475802.1| hypothetical protein FsymDgDRAFT_3060 [Frankia symbiont of Datisca glomerata] gi|289506523|gb|EFD27510.1| hypothetical protein FsymDgDRAFT_3060 [Frankia symbiont of Datisca glomerata] Length = 140 Score = 52.2 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 15/77 (19%), Positives = 24/77 (31%), Gaps = 7/77 (9%) Query: 88 LHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNI-HPKTKK 146 + T V G + ++ + + +DI G Y A HP T + Sbjct: 1 MTPTATVATG-GGGWHLYYQHPGTPVLSRPLPGHV--GIDIKADGGYVTAPPSTHPTTGR 57 Query: 147 EYTWTTPPHRFKVEDTP 163 Y W V + P Sbjct: 58 PYQWVGTR---PVNEMP 71 >gi|123372760|ref|XP_001297536.1| hypothetical protein [Trichomonas vaginalis G3] gi|121877734|gb|EAX84606.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 194 Score = 52.2 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 27/187 (14%), Positives = 55/187 (29%), Gaps = 15/187 (8%) Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620 + + +N+ +K + Y + + + N Sbjct: 6 CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNVVPMKLESS 65 Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679 D RRY+V+ +D + L T + + IP Sbjct: 66 D---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120 Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738 + ++ + + +ID+ + + SL SY +Y ++ Y S RT Sbjct: 121 -EERQTLLEANKSVYELFIDETNFVSLDE----RSLYDSYKQYCQE---YGYMAASKRTF 172 Query: 739 TLNLKQK 745 N+K Sbjct: 173 LANVKSL 179 >gi|123439567|ref|XP_001310553.1| hypothetical protein [Trichomonas vaginalis G3] gi|121892328|gb|EAX97623.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 194 Score = 52.2 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 27/187 (14%), Positives = 54/187 (28%), Gaps = 15/187 (8%) Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620 + N+ +K + Y + + + N Sbjct: 6 CNDFQSIDTTKVWNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNVVPMKLESS 65 Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679 D RRY+V+ +D + L T + + IP Sbjct: 66 D---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIP--H 119 Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738 + ++ + + +ID+ + + + SL SY +Y ++ Y S RT Sbjct: 120 TEERQTLLEANKSVYELFIDE----TDFVSLDERSLYDSYKQYCQE---YGYMTASKRTF 172 Query: 739 TLNLKQK 745 N+K Sbjct: 173 LANVKSL 179 >gi|123227269|ref|XP_001285968.1| hypothetical protein [Trichomonas vaginalis G3] gi|121850570|gb|EAX73038.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 194 Score = 52.2 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 27/187 (14%), Positives = 56/187 (29%), Gaps = 15/187 (8%) Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620 + + +N+ +K + Y + + + N Sbjct: 6 CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFVMVSNNAVPMKLESS 65 Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679 D RRY+V+ +D + L T + + IP Sbjct: 66 D---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120 Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738 + ++ + + +ID+ + + + SL SY +Y ++ Y S RT Sbjct: 121 -EERQTLLEANKSVYELFIDE----TDFVSLDERSLYDSYKQYCQE---YGYMTASKRTF 172 Query: 739 TLNLKQK 745 N+K Sbjct: 173 LANVKSL 179 >gi|323140297|ref|ZP_08075240.1| hypothetical protein Met49242DRAFT_4628 [Methylocystis sp. ATCC 49242] gi|322394447|gb|EFX97105.1| hypothetical protein Met49242DRAFT_4628 [Methylocystis sp. ATCC 49242] Length = 201 Score = 52.2 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 22/158 (13%), Positives = 40/158 (25%), Gaps = 34/158 (21%) Query: 19 KLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPA---CGFGFVCGVGEQPLYAFDIDSKDE 75 + PL RP R LS+++ + G V G L D+D + Sbjct: 1 RKTPLTP---RPGRTSG-----LSADEASRYFNGAPANIGVVLGQNSSGLSDVDLDCPEA 52 Query: 76 KTANTFKDTFEILHGTPIVRIGQ--KPKILIPFRMNK------------EGIKKKKTTES 121 A G+ + N + I K+ ++ Sbjct: 53 IAA------APYFLPKTAAIFGRETARASHWLYYTNAASVNLPGNLAFDDPIAKEGGAKA 106 Query: 122 TQGHLDIL-GCGQYFVAYNIHPKTKKEYTWTTPPHRFK 158 +D+ G V ++ + W Sbjct: 107 RL--VDLRLGPKVQTVFPGSTHESGEPIAWEPGCDGEP 142 >gi|123173734|ref|XP_001279824.1| hypothetical protein [Trichomonas vaginalis G3] gi|121830385|gb|EAX66894.1| hypothetical protein TVAG_571120 [Trichomonas vaginalis G3] Length = 211 Score = 52.2 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 30/201 (14%), Positives = 60/201 (29%), Gaps = 15/201 (7%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGIVERKYRDQRVCENVANFV 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T + Sbjct: 69 MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724 + IP + ++ + + +ID+ + + SL Y +Y ++ Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDE----TDFECLDERSLYDEYKQYCQE 178 Query: 725 ELNYDRKRISTRTVTLNLKQK 745 Y S RT N+K Sbjct: 179 ---YGYMTASKRTFLANVKSL 196 >gi|257140828|ref|ZP_05589090.1| DNA primase [Burkholderia thailandensis E264] Length = 950 Score = 52.2 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 21/66 (31%), Gaps = 2/66 (3%) Query: 212 AFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDT 271 S D W MA+ E +G + WS+ Y+ + W + Sbjct: 5 ERASVALGYVPADDRDTWRHAGMALKAEF--GEEGFALWNEWSQGAQNYNARDTRDVWKS 62 Query: 272 FDFEEI 277 F +I Sbjct: 63 FKGGKI 68 >gi|83717727|ref|YP_440202.1| DNA primase [Burkholderia thailandensis E264] gi|83651552|gb|ABC35616.1| DNA primase [Burkholderia thailandensis E264] Length = 955 Score = 52.2 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 21/66 (31%), Gaps = 2/66 (3%) Query: 212 AFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDT 271 S D W MA+ E +G + WS+ Y+ + W + Sbjct: 10 ERASVALGYVPADDRDTWRHAGMALKAEF--GEEGFALWNEWSQGAQNYNARDTRDVWKS 67 Query: 272 FDFEEI 277 F +I Sbjct: 68 FKGGKI 73 >gi|123209261|ref|XP_001285193.1| hypothetical protein [Trichomonas vaginalis G3] gi|121848222|gb|EAX72263.1| hypothetical protein TVAG_603180 [Trichomonas vaginalis G3] Length = 194 Score = 52.2 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 26/187 (13%), Positives = 53/187 (28%), Gaps = 15/187 (8%) Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620 + + +N+ +K + Y + + + N Sbjct: 6 CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESS 65 Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679 D RRY+V+ +D + L T + IP Sbjct: 66 D---RRYVVVR-TSDSHMQDTEYFDDLAETLTPNFYNHLFSYFMTLDISKFNPRQIPYT- 120 Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738 + ++ + + +ID+ + + SL Y +Y ++ Y S RT Sbjct: 121 -EERQTLLEANKSVYELFIDE----TDFECLDERSLYDEYKQYCQE---YGYMTASKRTF 172 Query: 739 TLNLKQK 745 N+K Sbjct: 173 LANVKSL 179 >gi|167900117|ref|ZP_02487518.1| hypothetical protein Bpse7_40730 [Burkholderia pseudomallei 7894] Length = 255 Score = 52.2 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 21/66 (31%), Gaps = 2/66 (3%) Query: 212 AFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDT 271 S D W MA+ E +G + WS+ Y+ + W + Sbjct: 5 ERASVVLGYVPADDRDTWRQAGMALKAEF--GEEGFTLWNEWSQGAQNYNARDARDVWKS 62 Query: 272 FDFEEI 277 F +I Sbjct: 63 FKGGKI 68 >gi|123157923|ref|XP_001278761.1| hypothetical protein [Trichomonas vaginalis G3] gi|121826455|gb|EAX65831.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 193 Score = 52.2 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 27/187 (14%), Positives = 55/187 (29%), Gaps = 15/187 (8%) Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620 + + +N+ +K + Y + + + N Sbjct: 6 CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESS 65 Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679 D RRY+V+ +D + L T + + IP Sbjct: 66 D---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120 Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738 + ++ + + +ID+ + + SL SY +Y ++ Y S RT Sbjct: 121 -EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE---YGYMTASKRTF 172 Query: 739 TLNLKQK 745 N+K Sbjct: 173 LANVKSL 179 >gi|313892469|ref|ZP_07826059.1| primase C-terminal domain protein [Dialister microaerophilus UPII 345-E] gi|313119151|gb|EFR42353.1| primase C-terminal domain protein [Dialister microaerophilus UPII 345-E] Length = 694 Score = 52.2 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 29/204 (14%), Positives = 67/204 (32%), Gaps = 22/204 (10%) Query: 225 SHDEWIPVVMAVHHETRGSSKGKEIARRWSKQ-GSTYDEENFNYKWDTFDFEEIGDTAKK 283 + EW+ V MA++HE E+ WS + + +++ K++TF Sbjct: 19 DYQEWLSVGMALNHE----GYPYEVWETWSSRDSARFNDGECEKKYNTFR------NNTN 68 Query: 284 RSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYI 343 + + + K + ++ SI + G+ D Y Sbjct: 69 PLSGAYIVELAKRHGWKKN---KETENKALDWNSIQEIGNLKQIVDLH--YLDTGEVPEP 123 Query: 344 WSLTLDKITASIMNFLVS--MKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSK 401 + + I+N+L + K D+F + ++ K + + N Sbjct: 124 RN---WEPIDDIINYLNAVFYKHDIFSVV-MTSQERQDGKYVPYGKGVYRLSVDKVINDL 179 Query: 402 AKSTAQSLEAGSIFSITSDLLDSS 425 + ++ + + +T D + Sbjct: 180 KRYRSKGYKPDDVIGMTFGDYDKN 203 >gi|172054864|ref|YP_001806191.1| hypothetical protein cce_4777 [Cyanothece sp. ATCC 51142] gi|171701145|gb|ACB54125.1| hypothetical protein cce_4777 [Cyanothece sp. ATCC 51142] Length = 339 Score = 52.2 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 13/116 (11%), Positives = 32/116 (27%), Gaps = 14/116 (12%) Query: 679 CLKAKEEERQGTDTYQAWIDDCCDIGENLW---------EESHSLAKS-----YSEYREQ 724 ++ + AW+++ + ES + + Y Y Sbjct: 4 VDITTDKSMVENNPIAAWLNENIIYDPQSYTHVGKAIKSTESDEVYRGASKWLYPNYCAF 63 Query: 725 ELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDD 780 IS + L + ++ ++ I+GLK++ + Sbjct: 64 CEGIKVNPISLNRFSTLLLDLCNHQLNLNDVVKDRNRNGVFIQGLKIRDHLDDEAP 119 >gi|123316513|ref|XP_001292366.1| hypothetical protein [Trichomonas vaginalis G3] gi|121867808|gb|EAX79436.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 194 Score = 52.2 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 29/191 (15%), Positives = 55/191 (28%), Gaps = 23/191 (12%) Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620 + + +N+ +K + Y + + + N Sbjct: 6 CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNVVPMKLESS 65 Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679 D RRY+V+ +D + L T + + IP Sbjct: 66 D---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120 Query: 680 LKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIS 734 + ++ + + +ID +C D SL SY +Y ++ Y S Sbjct: 121 -EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDSYKQYCQE---YGYMAAS 168 Query: 735 TRTVTLNLKQK 745 RT N+K Sbjct: 169 KRTFLANVKNL 179 >gi|220930664|ref|YP_002507573.1| primase [Clostridium cellulolyticum H10] gi|220000992|gb|ACL77593.1| Primase 2 [Clostridium cellulolyticum H10] Length = 741 Score = 52.2 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 24/171 (14%), Positives = 43/171 (25%), Gaps = 19/171 (11%) Query: 225 SHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGST-YDEENFNYKWDTFDFEEIGDTAKK 283 + EW+ V MA+ WS+Q + Y KWDTF Sbjct: 21 DYQEWLSVGMALK----EDGYTAADWDTWSRQDTKRYHSGECFKKWDTFRGTSS------ 70 Query: 284 RSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYI 343 T ++ + N K + K W + + Sbjct: 71 PVTAGTIVQMAKDNGWL-PKRNESGHELNWEDSIGSKDDLVVI---NKGWLE----GKEV 122 Query: 344 WSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQ 394 ++++L + E ++ E K + R Sbjct: 123 IEPEAWDPVGQLVSYLEILFEASENVGYVTESWFNEEKQKYLPTKGAWDRT 173 >gi|123277049|ref|XP_001289970.1| hypothetical protein [Trichomonas vaginalis G3] gi|121861801|gb|EAX77040.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 196 Score = 52.2 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 26/187 (13%), Positives = 55/187 (29%), Gaps = 15/187 (8%) Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620 + + +N+ +K + Y + + + N Sbjct: 6 CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESS 65 Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679 D RRY+V+ +D + L T + + IP Sbjct: 66 D---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120 Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738 + ++ + + +ID+ + + + SL Y +Y ++ Y S RT Sbjct: 121 -EERQTLLEANKSVYELFIDE----TDFVSLDERSLYDEYKQYCQE---YGYMAASKRTF 172 Query: 739 TLNLKQK 745 N+K Sbjct: 173 LANVKSL 179 >gi|123150894|ref|XP_001277737.1| hypothetical protein [Trichomonas vaginalis G3] gi|123366430|ref|XP_001296637.1| hypothetical protein [Trichomonas vaginalis G3] gi|123367780|ref|XP_001297162.1| hypothetical protein [Trichomonas vaginalis G3] gi|123476968|ref|XP_001321654.1| hypothetical protein [Trichomonas vaginalis G3] gi|121822419|gb|EAX64807.1| conserved hypothetical protein [Trichomonas vaginalis G3] gi|121876343|gb|EAX83707.1| conserved hypothetical protein [Trichomonas vaginalis G3] gi|121877168|gb|EAX84232.1| conserved hypothetical protein [Trichomonas vaginalis G3] gi|121904484|gb|EAY09431.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 194 Score = 52.2 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 27/187 (14%), Positives = 55/187 (29%), Gaps = 15/187 (8%) Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620 + + +N+ +K + Y + + + N Sbjct: 6 CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESS 65 Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679 D RRY+V+ +D + L T + + IP Sbjct: 66 D---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120 Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738 + ++ + + +ID+ + + SL SY +Y ++ Y S RT Sbjct: 121 -EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE---YGYMTASKRTF 172 Query: 739 TLNLKQK 745 N+K Sbjct: 173 LANVKSL 179 >gi|74229767|ref|YP_308971.1| viral helicase [Trichoplusia ni SNPV] gi|72259681|gb|AAZ67452.1| viral helicase [Trichoplusia ni SNPV] Length = 1217 Score = 52.2 bits (123), Expect = 3e-04, Method: Composition-based stats. Identities = 44/362 (12%), Positives = 104/362 (28%), Gaps = 47/362 (12%) Query: 307 FSDAYNKAMFSIYKKGHFLYTADTKAWY----KKDKNNVYIWSLTLDKIT-----ASIMN 357 +S K ++ K + Y +++ I KI S++ Sbjct: 702 YSSGLYKKIYKDNIKWTLKKRPENIILYNNLAFFNEHRESIIDYLYSKIDKIDFIDSLIT 761 Query: 358 FLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSI 417 L S ++ + L ++ R + + ++ + +S + Sbjct: 762 ELSSPEDFIETLRTHIGSSS------RSCLTQNKNEEENDDFAVDDRINESPKDAEDVES 815 Query: 418 TSDLLDSSSRFLGEQDGI----LDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLD-- 471 +L D + + + L + +P + + + Sbjct: 816 KENLTDFYRNYCNTWNILKRWNLWWDKLIIRRPN-DDLNSWLVRFYMRIFMTQLNLDEYN 874 Query: 472 --LVSGY---------FESEEVMD-YFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLM 518 V F + ++ G ++ + + + I++ G GSGKS+ Sbjct: 875 STFVKQIVRGYLYFRGFTNFNYINSLVMMHFGASMGIPSDYEKCCIYLNGKPGSGKSSFF 934 Query: 519 NLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKI 578 L++Y +++ + + E I + NE + + Sbjct: 935 ELLEYIVVVH-KHDSDKYTLSKKDTNEMEA---------DKMISQLYVINEMKVCDDSFF 984 Query: 579 KQMT-GGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637 K + + + A++ IV NK L + + D R+ V+ D Sbjct: 985 KSTADSTKSNSVCRKF-QGSQKYEANYKLLIVNNKPLHISDYDKGVRNRFAVVYTDHLFE 1043 Query: 638 NR 639 Sbjct: 1044 EN 1045 >gi|123269784|ref|XP_001289700.1| hypothetical protein [Trichomonas vaginalis G3] gi|121861104|gb|EAX76770.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 194 Score = 52.2 bits (123), Expect = 4e-04, Method: Composition-based stats. Identities = 27/189 (14%), Positives = 54/189 (28%), Gaps = 19/189 (10%) Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620 + + +N+ +K + Y + + + N Sbjct: 6 CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFVMVSNNAVPMKLESS 65 Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679 D RRY+V+ +D + L T + + IP Sbjct: 66 D---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120 Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHS--LAKSYSEYREQELNYDRKRISTR 736 + ++ + + +ID+ N +E L Y +Y ++ Y S R Sbjct: 121 -EERQTLLEANKSVYELFIDE------NDFECLDERSLYDEYKQYCQE---YGYMTASKR 170 Query: 737 TVTLNLKQK 745 T N+K Sbjct: 171 TFLANVKNL 179 >gi|123249958|ref|XP_001288915.1| hypothetical protein [Trichomonas vaginalis G3] gi|121859005|gb|EAX75985.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 211 Score = 52.2 bits (123), Expect = 4e-04, Method: Composition-based stats. Identities = 32/201 (15%), Positives = 62/201 (30%), Gaps = 15/201 (7%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKAGVVERKYKDQRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T + Sbjct: 69 MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDALSECLTSDFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724 + IP K ++ + + +ID+ + + + SL SY +Y ++ Sbjct: 125 DISKFNPRQIPHT--KERQTLLEANKSVYELFIDE----TDFVSLDERSLYDSYKQYCQE 178 Query: 725 ELNYDRKRISTRTVTLNLKQK 745 Y S RT N+K Sbjct: 179 ---YGYMAASKRTFLANVKSL 196 >gi|237810289|ref|YP_002894740.1| primase C 2 (PriCT-2) family [Burkholderia pseudomallei MSHR346] gi|237504566|gb|ACQ96884.1| primase C 2 (PriCT-2) family [Burkholderia pseudomallei MSHR346] Length = 950 Score = 52.2 bits (123), Expect = 4e-04, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 21/66 (31%), Gaps = 2/66 (3%) Query: 212 AFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDT 271 S D W MA+ E +G + WS+ Y+ + W + Sbjct: 5 ERASVALGYVPADDRDTWRQAGMALKAEF--GEEGFTLWNEWSQGAQNYNARDARDVWKS 62 Query: 272 FDFEEI 277 F +I Sbjct: 63 FKGGKI 68 >gi|167843732|ref|ZP_02469240.1| hypothetical protein BpseB_00480 [Burkholderia pseudomallei B7210] Length = 950 Score = 52.2 bits (123), Expect = 4e-04, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 21/66 (31%), Gaps = 2/66 (3%) Query: 212 AFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDT 271 S D W MA+ E +G + WS+ Y+ + W + Sbjct: 5 ERASVALGYVPADDRDTWRQAGMALKAEF--GEEGFTLWNEWSQGAQNYNARDARDVWKS 62 Query: 272 FDFEEI 277 F +I Sbjct: 63 FKGGKI 68 >gi|167822127|ref|ZP_02453598.1| inner membrane protein [Burkholderia pseudomallei 9] gi|226193316|ref|ZP_03788926.1| DNA primase TraC [Burkholderia pseudomallei Pakistan 9] gi|225934916|gb|EEH30893.1| DNA primase TraC [Burkholderia pseudomallei Pakistan 9] Length = 950 Score = 52.2 bits (123), Expect = 4e-04, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 21/66 (31%), Gaps = 2/66 (3%) Query: 212 AFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDT 271 S D W MA+ E +G + WS+ Y+ + W + Sbjct: 5 ERASVALGYVPADDRDTWRQAGMALKAEF--GEEGFTLWNEWSQGAQNYNARDARDVWKS 62 Query: 272 FDFEEI 277 F +I Sbjct: 63 FKGGKI 68 >gi|167813585|ref|ZP_02445265.1| hypothetical protein Bpse9_00515 [Burkholderia pseudomallei 91] Length = 950 Score = 52.2 bits (123), Expect = 4e-04, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 21/66 (31%), Gaps = 2/66 (3%) Query: 212 AFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDT 271 S D W MA+ E +G + WS+ Y+ + W + Sbjct: 5 ERASVALGYVPADDRDTWRQAGMALKAEF--GEEGFTLWNEWSQGAQNYNARDARDVWKS 62 Query: 272 FDFEEI 277 F +I Sbjct: 63 FKGGKI 68 >gi|254261053|ref|ZP_04952107.1| DNA primase TraC [Burkholderia pseudomallei 1710a] gi|254219742|gb|EET09126.1| DNA primase TraC [Burkholderia pseudomallei 1710a] Length = 950 Score = 52.2 bits (123), Expect = 4e-04, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 21/66 (31%), Gaps = 2/66 (3%) Query: 212 AFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDT 271 S D W MA+ E +G + WS+ Y+ + W + Sbjct: 5 ERASVALGYVPADDRDTWRQAGMALKAEF--GEEGFTLWNEWSQGAQNYNARDARDVWKS 62 Query: 272 FDFEEI 277 F +I Sbjct: 63 FKGGKI 68 >gi|126452256|ref|YP_001064398.1| hypothetical protein BURPS1106A_0113 [Burkholderia pseudomallei 1106a] gi|242316894|ref|ZP_04815910.1| DNA primase TraC [Burkholderia pseudomallei 1106b] gi|126225898|gb|ABN89438.1| DNA primase TraC [Burkholderia pseudomallei 1106a] gi|242140133|gb|EES26535.1| DNA primase TraC [Burkholderia pseudomallei 1106b] Length = 950 Score = 52.2 bits (123), Expect = 4e-04, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 21/66 (31%), Gaps = 2/66 (3%) Query: 212 AFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDT 271 S D W MA+ E +G + WS+ Y+ + W + Sbjct: 5 ERASVALGYVPADDRDTWRQAGMALKAEF--GEEGFTLWNEWSQGAQNYNARDARDVWKS 62 Query: 272 FDFEEI 277 F +I Sbjct: 63 FKGGKI 68 >gi|126440554|ref|YP_001057153.1| hypothetical protein BURPS668_0098 [Burkholderia pseudomallei 668] gi|126220047|gb|ABN83553.1| conserved hypothetical protein [Burkholderia pseudomallei 668] Length = 950 Score = 52.2 bits (123), Expect = 4e-04, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 21/66 (31%), Gaps = 2/66 (3%) Query: 212 AFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDT 271 S D W MA+ E +G + WS+ Y+ + W + Sbjct: 5 ERASVALGYVPADDRDTWRQAGMALKAEF--GEEGFTLWNEWSQGAQNYNARDARDVWKS 62 Query: 272 FDFEEI 277 F +I Sbjct: 63 FKGGKI 68 >gi|123224874|ref|XP_001285715.1| hypothetical protein [Trichomonas vaginalis G3] gi|121849834|gb|EAX72785.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 194 Score = 52.2 bits (123), Expect = 4e-04, Method: Composition-based stats. Identities = 27/187 (14%), Positives = 55/187 (29%), Gaps = 15/187 (8%) Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620 + + +N+ +K + Y + + + N Sbjct: 6 CNELQSIDTTKILNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESS 65 Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679 D RRY+V+ +D + L T + + IP Sbjct: 66 D---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120 Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738 + ++ + + +ID+ + + SL SY +Y ++ Y S RT Sbjct: 121 -EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE---YGYMTASKRTF 172 Query: 739 TLNLKQK 745 N+K Sbjct: 173 LANVKSL 179 >gi|76810763|ref|YP_331725.1| inner membrane protein [Burkholderia pseudomallei 1710b] gi|76580216|gb|ABA49691.1| inner membrane protein [Burkholderia pseudomallei 1710b] Length = 955 Score = 52.2 bits (123), Expect = 4e-04, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 21/66 (31%), Gaps = 2/66 (3%) Query: 212 AFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDT 271 S D W MA+ E +G + WS+ Y+ + W + Sbjct: 10 ERASVALGYVPADDRDTWRQAGMALKAEF--GEEGFTLWNEWSQGAQNYNARDARDVWKS 67 Query: 272 FDFEEI 277 F +I Sbjct: 68 FKGGKI 73 >gi|53717722|ref|YP_106708.1| hypothetical protein BPSL0082 [Burkholderia pseudomallei K96243] gi|52208136|emb|CAH34066.1| hypothetical protein BPSL0082 [Burkholderia pseudomallei K96243] Length = 955 Score = 52.2 bits (123), Expect = 4e-04, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 21/66 (31%), Gaps = 2/66 (3%) Query: 212 AFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDT 271 S D W MA+ E +G + WS+ Y+ + W + Sbjct: 10 ERASVALGYVPADDRDTWRQAGMALKAEF--GEEGFTLWNEWSQGAQNYNARDARDVWKS 67 Query: 272 FDFEEI 277 F +I Sbjct: 68 FKGGKI 73 >gi|123502810|ref|XP_001328377.1| hypothetical protein [Trichomonas vaginalis G3] gi|121911319|gb|EAY16154.1| hypothetical protein TVAG_465420 [Trichomonas vaginalis G3] Length = 194 Score = 52.2 bits (123), Expect = 4e-04, Method: Composition-based stats. Identities = 26/187 (13%), Positives = 54/187 (28%), Gaps = 15/187 (8%) Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620 + + +N+ +K + Y + + + N Sbjct: 6 CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESS 65 Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679 D RRY+V+ +D + L T + + IP Sbjct: 66 D---RRYVVVR-TSEAHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPY-- 119 Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738 + ++ + + +ID+ + + SL Y +Y ++ Y S RT Sbjct: 120 TEERQTLLEANKSVYELFIDE----TDFECLDERSLYDEYKQYCQE---YGYMTASKRTF 172 Query: 739 TLNLKQK 745 N+K Sbjct: 173 LANVKNL 179 >gi|123310861|ref|XP_001291636.1| hypothetical protein [Trichomonas vaginalis G3] gi|121865969|gb|EAX78706.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 194 Score = 52.2 bits (123), Expect = 4e-04, Method: Composition-based stats. Identities = 26/187 (13%), Positives = 55/187 (29%), Gaps = 15/187 (8%) Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620 + + +N+ +K + Y + + + N Sbjct: 6 CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESS 65 Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679 D RRY+V+ +D + L T + + IP Sbjct: 66 D---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120 Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738 + ++ + + +ID+ + + + SL Y +Y ++ Y S RT Sbjct: 121 -EERQTLLEANKSVYELFIDE----TDFVSLDEKSLYDEYKQYCQE---YGYMAASKRTF 172 Query: 739 TLNLKQK 745 N+K Sbjct: 173 LANVKSL 179 >gi|123284783|ref|XP_001290215.1| hypothetical protein [Trichomonas vaginalis G3] gi|121862400|gb|EAX77285.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 194 Score = 52.2 bits (123), Expect = 4e-04, Method: Composition-based stats. Identities = 27/187 (14%), Positives = 55/187 (29%), Gaps = 15/187 (8%) Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620 + + +N+ +K + Y + + + N Sbjct: 6 CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNVVPMKLESS 65 Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679 D RRY+V+ +D + L T + + IP Sbjct: 66 D---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120 Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738 + ++ + + +ID+ + + SL SY +Y ++ Y S RT Sbjct: 121 -EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE---YGYMAASKRTF 172 Query: 739 TLNLKQK 745 N+K Sbjct: 173 LANVKSL 179 >gi|123181991|ref|XP_001280571.1| hypothetical protein [Trichomonas vaginalis G3] gi|121833065|gb|EAX67641.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 194 Score = 52.2 bits (123), Expect = 4e-04, Method: Composition-based stats. Identities = 29/191 (15%), Positives = 55/191 (28%), Gaps = 23/191 (12%) Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620 + + +N+ +K + Y + + + N Sbjct: 6 CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESS 65 Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679 D RRY+V+ +D + L T + + IP Sbjct: 66 D---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120 Query: 680 LKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIS 734 + ++ + + +ID +C D SL SY +Y ++ Y S Sbjct: 121 -EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDSYKQYCQE---YGYMAAS 168 Query: 735 TRTVTLNLKQK 745 RT N+K Sbjct: 169 KRTFLANVKSL 179 >gi|160897071|ref|YP_001562653.1| primase 2 [Delftia acidovorans SPH-1] gi|160362655|gb|ABX34268.1| Primase 2 [Delftia acidovorans SPH-1] Length = 309 Score = 52.2 bits (123), Expect = 4e-04, Method: Composition-based stats. Identities = 15/153 (9%), Positives = 40/153 (26%), Gaps = 17/153 (11%) Query: 212 AFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDT 271 + + + + WI MA+ E G ++ WS++ +Y+ + W + Sbjct: 3 DRIRNALQYLNHDDREVWIMAGMAIKAEI--GESGFDLWDEWSRRADSYNPKAARASWRS 60 Query: 272 FDFEEIG-----------DTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAM----F 316 F + + + +R + + Sbjct: 61 FRGSGVTVGSLFHEATAAGWTPRDDVAFQPLTEAQLQAQQKARDARLAAEQAQRRQDQEK 120 Query: 317 SIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLD 349 + K G L+ + + ++ Sbjct: 121 AARKAGWILHQCKHEQHAYLHSKGWPEATGSVW 153 >gi|123221437|ref|XP_001285430.1| hypothetical protein [Trichomonas vaginalis G3] gi|121848965|gb|EAX72500.1| hypothetical protein TVAG_547320 [Trichomonas vaginalis G3] Length = 211 Score = 52.2 bits (123), Expect = 4e-04, Method: Composition-based stats. Identities = 29/201 (14%), Positives = 60/201 (29%), Gaps = 15/201 (7%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFI 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T + Sbjct: 69 MVSNNAVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDALSECLTSDFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQ 724 + IP + ++ + + +I++ + + SL Y +Y ++ Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIEE----SDFECLDEKSLYDEYKQYCQE 178 Query: 725 ELNYDRKRISTRTVTLNLKQK 745 Y S RT N+K Sbjct: 179 ---YGYMAASKRTFLANVKSL 196 >gi|123149707|ref|XP_001277699.1| hypothetical protein [Trichomonas vaginalis G3] gi|123194750|ref|XP_001283142.1| hypothetical protein [Trichomonas vaginalis G3] gi|123271704|ref|XP_001289774.1| hypothetical protein [Trichomonas vaginalis G3] gi|121822270|gb|EAX64769.1| conserved hypothetical protein [Trichomonas vaginalis G3] gi|121841930|gb|EAX70212.1| conserved hypothetical protein [Trichomonas vaginalis G3] gi|121861286|gb|EAX76844.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 194 Score = 52.2 bits (123), Expect = 4e-04, Method: Composition-based stats. Identities = 27/187 (14%), Positives = 55/187 (29%), Gaps = 15/187 (8%) Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620 + + +N+ +K + Y + + + N Sbjct: 6 CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESS 65 Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679 D RRY+V+ +D + L T + + IP Sbjct: 66 D---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120 Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738 + ++ + + +ID+ + + SL SY +Y ++ Y S RT Sbjct: 121 -EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE---YGYMTASKRTF 172 Query: 739 TLNLKQK 745 N+K Sbjct: 173 LANVKSL 179 >gi|21950724|gb|AAM78585.1| helicase [Helicoverpa armigera NPV] Length = 1253 Score = 52.2 bits (123), Expect = 4e-04, Method: Composition-based stats. Identities = 28/156 (17%), Positives = 55/156 (35%), Gaps = 13/156 (8%) Query: 485 YFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP 543 G +L + + + I++ G GSGKS+ +L++ + + + Sbjct: 938 LLMMHFGASLGIPTDYEKCCIYLNGEPGSGKSSFFDLLESIIVVHKRDADKYTL--SKKE 995 Query: 544 PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMT-GGDCMTARLNYGNTYSESPA 602 + +AN + +L NE E N + K + Y + A Sbjct: 996 TDEMEANKLISQLY--------VINELKECNDSFFKSTADSSKSNSVCRKY-QGSQKYEA 1046 Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN 638 ++ +V NK L + + D R+ V+ D Sbjct: 1047 NYKLLVVNNKPLHISDYDRGVRNRFCVVYTDHEFLE 1082 >gi|123360648|ref|XP_001295890.1| hypothetical protein [Trichomonas vaginalis G3] gi|121875110|gb|EAX82960.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 194 Score = 51.8 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 29/191 (15%), Positives = 55/191 (28%), Gaps = 23/191 (12%) Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620 + + +N+ +K + Y + + + N Sbjct: 6 CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNVVPMKLESS 65 Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679 D RRY+V+ +D + L T + + IP Sbjct: 66 D---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120 Query: 680 LKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIS 734 + ++ + + +ID +C D SL SY +Y ++ Y S Sbjct: 121 -EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDSYKQYCQE---YGYMTAS 168 Query: 735 TRTVTLNLKQK 745 RT N+K Sbjct: 169 KRTFLANVKNL 179 >gi|209401140|ref|YP_002274009.1| helicase [Helicoverpa armigera NPV NNg1] gi|209364392|dbj|BAG74651.1| helicase [Helicoverpa armigera NPV NNg1] Length = 1253 Score = 51.8 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 28/156 (17%), Positives = 55/156 (35%), Gaps = 13/156 (8%) Query: 485 YFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP 543 G +L + + + I++ G GSGKS+ +L++ + + + Sbjct: 938 LLMMHFGASLGIPTDYEKCCIYLNGEPGSGKSSFFDLLESIIVVHKRDADKYTL--SKKE 995 Query: 544 PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMT-GGDCMTARLNYGNTYSESPA 602 + +AN + +L NE E N + K + Y + A Sbjct: 996 TDEMEANKLISQLY--------VINELKECNDSFFKSTADSSKSNSVCRKY-QGSQKYEA 1046 Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN 638 ++ +V NK L + + D R+ V+ D Sbjct: 1047 NYKLLVVNNKPLHISDYDRGVRNRFCVVYTDHEFLE 1082 >gi|123173775|ref|XP_001279830.1| hypothetical protein [Trichomonas vaginalis G3] gi|123331633|ref|XP_001293933.1| hypothetical protein [Trichomonas vaginalis G3] gi|121830398|gb|EAX66900.1| hypothetical protein TVAG_580980 [Trichomonas vaginalis G3] gi|121871343|gb|EAX81003.1| hypothetical protein TVAG_508390 [Trichomonas vaginalis G3] Length = 194 Score = 51.8 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 25/187 (13%), Positives = 54/187 (28%), Gaps = 15/187 (8%) Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620 + + +N+ +K + Y + + + N Sbjct: 6 CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESS 65 Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679 D RRY+V+ +D + L T + + IP Sbjct: 66 D---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120 Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738 + ++ + + +I++ + + SL Y +Y ++ Y S RT Sbjct: 121 -EERQTLLEANKSVYELFIEE----SDFECLDEKSLYDEYKQYCQE---YGYMAASKRTF 172 Query: 739 TLNLKQK 745 N+K Sbjct: 173 LANVKSL 179 >gi|134303486|ref|YP_001111355.1| hypothetical protein GrBNV_gp88 [Gryllus bimaculatus nudivirus] gi|134022872|gb|ABO45421.1| unknown [Gryllus bimaculatus nudivirus] Length = 1329 Score = 51.8 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 38/270 (14%), Positives = 84/270 (31%), Gaps = 37/270 (13%) Query: 485 YFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544 F + L N+ + + G G +GK+ +I F Sbjct: 901 LFLDILTTYYLPINENRFINILYGTGDNGKTHWCEIINCLFAGSVCQINNL--------- 951 Query: 545 EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604 ++ +A + + IV NE + +K ++G D Y + S + Sbjct: 952 DSNEARSHIASSYSAVIV-----NEIKYLTENIMKAISGNDKSDYSTFYTQKLTPSTHNS 1006 Query: 605 TPFIVPNKHLFVRNP--DDAWWRRYIVIPFDKPIANR-----DASFAQKLETKYTLEA-- 655 F N + +N D A +R++VI I N F ++ +Y + Sbjct: 1007 ALFGATNCVISFKNKNIDTASIKRFLVIELIGKIRNDCNISCKDFFINFIKKEYLIGVTQ 1066 Query: 656 ---------KKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQ----GTDTYQAWIDDC-C 701 + + L V ++ + E ++ + + +I + Sbjct: 1067 NVPRVLSHYLCFLIFSRFLDNRNSLYVTNIDIHNEDTENYQKEVYRENNIFYNFIHNMGL 1126 Query: 702 DIGENLWEESHSLAKSYSEYREQELNYDRK 731 N + +S + +Y ++ + + Sbjct: 1127 RFAPNFFMKSKDILNLARKYIDENNKFIKN 1156 >gi|123157010|ref|XP_001278569.1| hypothetical protein [Trichomonas vaginalis G3] gi|121825734|gb|EAX65639.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 194 Score = 51.8 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 27/187 (14%), Positives = 55/187 (29%), Gaps = 15/187 (8%) Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620 + + +N+ +K + Y + + + N Sbjct: 6 CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNTVPMKLESS 65 Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679 D RRY+V+ +D + L T + + IP Sbjct: 66 D---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120 Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738 + ++ + + +ID+ + + SL SY +Y ++ Y S RT Sbjct: 121 -EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE---YGYMTASKRTF 172 Query: 739 TLNLKQK 745 N+K Sbjct: 173 LANVKSL 179 >gi|18138275|ref|NP_542710.1| helicase [Helicoverpa zea SNPV] gi|18028657|gb|AAL56093.1|AF334030_18 ORF87 [Helicoverpa zea SNPV] Length = 1253 Score = 51.8 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 28/156 (17%), Positives = 55/156 (35%), Gaps = 13/156 (8%) Query: 485 YFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP 543 G +L + + + I++ G GSGKS+ +L++ + + + Sbjct: 938 LLMMHFGASLGIPTDYEKCCIYLNGEPGSGKSSFFDLLESIIVVHKRDADKYTL--SKKE 995 Query: 544 PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMT-GGDCMTARLNYGNTYSESPA 602 + +AN + +L NE E N + K + Y + A Sbjct: 996 TDEMEANKLISQLY--------VINELKECNDSFFKSTADSSKSNSVCRKY-QGSQKYEA 1046 Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN 638 ++ +V NK L + + D R+ V+ D Sbjct: 1047 NYKLLVVNNKPLHISDYDRGVRNRFCVVYTDHEFLE 1082 >gi|123410881|ref|XP_001303778.1| hypothetical protein [Trichomonas vaginalis G3] gi|121885182|gb|EAX90848.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 194 Score = 51.8 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 27/187 (14%), Positives = 57/187 (30%), Gaps = 15/187 (8%) Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620 + + +N+ +K + Y ++ + + N Sbjct: 6 CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDSRVCENVANFIMVSNNVVPMKLESS 65 Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679 D RRY+V+ +D + L T + + IP Sbjct: 66 D---RRYVVVR-TSDSHMQDTEYFDALSETLTSDFYNHLFSYFMTLDISNFNPRQIPHT- 120 Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738 + ++ + + +ID+ + + + SL SY +Y ++ Y S RT Sbjct: 121 -EERQTLLEANKSVYELFIDE----TDFVSLDERSLYDSYKQYCQE---YGYMAASKRTF 172 Query: 739 TLNLKQK 745 N+K Sbjct: 173 LANVKSL 179 >gi|38638662|ref|NP_944363.1| gp54 [Burkholderia phage Bcep1] gi|34486044|gb|AAQ73401.1| gp54 [Burkholderia phage Bcep1] Length = 824 Score = 51.8 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 33/241 (13%), Positives = 61/241 (25%), Gaps = 40/241 (16%) Query: 460 FVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMA----LLGGNKAQRFIHIRGVGGSGKS 515 + + F + S+ + L G + G GG+GKS Sbjct: 510 WDGTQRLDTFFVDLCDALPSDALTATTQLLFAGIVKRQLQPGAPLPVVPVLIGPGGTGKS 569 Query: 516 TLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA 575 + + A A A + L +E + Sbjct: 570 YFVEQLAAAL---KFPQPPALAFTDTIRMTMEAATSGIAEL--------AEMSGMGRRET 618 Query: 576 AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP 635 +IK T T R Y P F NKH + RR++ + F Sbjct: 619 EEIKLWTTDTSDTYRAPYERRPFAHPRRFALIGTANKHETNHDATG--NRRFMPV-FVNR 675 Query: 636 IANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPE-----VCLKAKEEERQGT 690 + W ++ ++ + P+ + +A ++ Sbjct: 676 PIDP-----------------NWHVEALQLFAEAKARFVEPDGEYARLVRRASALVKEYN 718 Query: 691 D 691 D Sbjct: 719 D 719 >gi|77405307|ref|ZP_00782403.1| conserved hypothetical protein [Streptococcus agalactiae H36B] gi|77176102|gb|EAO78875.1| conserved hypothetical protein [Streptococcus agalactiae H36B] Length = 765 Score = 51.8 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 21/114 (18%), Positives = 35/114 (30%), Gaps = 12/114 (10%) Query: 225 SHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKR 284 + W+ V MA+ HE + WS+ S Y + KWD+F G Sbjct: 27 DYQTWVQVGMALKHEGYTA----MDWDVWSQSDSRYKKGECFAKWDSFQGNGFGTI---- 78 Query: 285 STFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDK 338 T ++ DA+ + + Y K W + + Sbjct: 79 -TGATITQLAKDNGWTSSEYRNSDDAHELSWDDTIDRD---YKIVDKNWIESKE 128 >gi|12597569|ref|NP_075153.1| helicase [Helicoverpa armigera nucleopolyhedrovirus G4] gi|12483835|gb|AAG53827.1|AF271059_84 helicase [Helicoverpa armigera nucleopolyhedrovirus G4] gi|14268753|gb|AAK57882.1|AF266701_2 helicase [Helicoverpa armigera NPV] Length = 1253 Score = 51.8 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 28/156 (17%), Positives = 55/156 (35%), Gaps = 13/156 (8%) Query: 485 YFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP 543 G +L + + + I++ G GSGKS+ +L++ + + + Sbjct: 938 LLMMHFGASLGIPTDYEKCCIYLNGEPGSGKSSFFDLLESIIVVHKRDADKYTL--SKKE 995 Query: 544 PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMT-GGDCMTARLNYGNTYSESPA 602 + +AN + +L NE E N + K + Y + A Sbjct: 996 TDEMEANKLISQLY--------VINELKECNDSFFKSTADSSKSNSVCRKY-QGSQKYEA 1046 Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN 638 ++ +V NK L + + D R+ V+ D Sbjct: 1047 NYKLLVVNNKPLHISDYDRGVRNRFCVVYTDHEFLE 1082 >gi|123176399|ref|XP_001280001.1| hypothetical protein [Trichomonas vaginalis G3] gi|121831007|gb|EAX67071.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 194 Score = 51.8 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 27/187 (14%), Positives = 55/187 (29%), Gaps = 15/187 (8%) Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620 + + +N+ +K + Y + + + N Sbjct: 6 CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFVMVSNNAVPMKLESS 65 Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679 D RRY+V+ +D + L T + + IP Sbjct: 66 D---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120 Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738 + ++ + + +ID+ + + SL SY +Y ++ Y S RT Sbjct: 121 -EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE---YGYMTASKRTF 172 Query: 739 TLNLKQK 745 N+K Sbjct: 173 LANVKSL 179 >gi|167583159|ref|ZP_02376033.1| DNA primase [Burkholderia thailandensis TXDOH] Length = 950 Score = 51.8 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 2/54 (3%) Query: 224 GSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEI 277 D W MA+ E +G I WS+ Y+ + W +F +I Sbjct: 17 DDRDTWRQAGMALKAEF--GEEGFAIWNEWSQGAQNYNARDARDVWKSFKGGKI 68 >gi|123242124|ref|XP_001288168.1| hypothetical protein [Trichomonas vaginalis G3] gi|121856921|gb|EAX75238.1| hypothetical protein TVAG_331020 [Trichomonas vaginalis G3] Length = 194 Score = 51.8 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 29/191 (15%), Positives = 53/191 (27%), Gaps = 23/191 (12%) Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620 + +N+ +K + Y + + + N Sbjct: 6 CNDFQSIDTTKVLNSDALKSLITDKVGVVERKYRDQRVCENVANFVMVSNNVVPMKLESS 65 Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679 D RRY+V+ +D + L T + IP Sbjct: 66 D---RRYVVVR-TSDSHMQDTEYFDDLAETLTPNFYNHLFSYFMTLDISKFNPRQIPHT- 120 Query: 680 LKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIS 734 + ++ + + +ID +C D SL SY +Y ++ Y S Sbjct: 121 -EERQTLLEANKSVYELFIDETNFECLDE--------KSLYDSYKQYCQE---YGYMAAS 168 Query: 735 TRTVTLNLKQK 745 RT N+K Sbjct: 169 KRTFLANVKSL 179 >gi|309774710|ref|ZP_07669734.1| bifunctional DNA primase/polymerase, N- superfamily [Erysipelotrichaceae bacterium 3_1_53] gi|308917610|gb|EFP63326.1| bifunctional DNA primase/polymerase, N- superfamily [Erysipelotrichaceae bacterium 3_1_53] Length = 499 Score = 51.8 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 31/243 (12%), Positives = 68/243 (27%), Gaps = 28/243 (11%) Query: 9 QAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSE-KIDKLP---ACGFGFVCGVGEQP 64 A K+ PL++ K Q L +E+ + + +I K G Sbjct: 7 YALTYAQVNCKVFPLKVNSKDGQTLTSLKEKATTDKKQITKWFTNTDYNVCVSTGE---G 63 Query: 65 LYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQG 124 + ++D++ K + + + +++NKE T + Sbjct: 64 IIVIEVDAQ--KNGKEIIERYIKQFPITMTVRTPDGGWHFYYQVNKE----IDTQFNLYK 117 Query: 125 HLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPL 184 +++ G G + + + Y P + +F E Sbjct: 118 GINVYGNGSFVLGAGSQLENGNYYISINKP---------------IAKANEFIHEFLKGA 162 Query: 185 VKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSS 244 + D + S + +Q I L F S + M + + + Sbjct: 163 INDFQVTWKSALEMSQLPQQENTDIIKQLLPVGVTLFGAPSKMGKTFLCMQLANAVAEGT 222 Query: 245 KGK 247 + Sbjct: 223 EFL 225 >gi|15426395|ref|NP_203639.1| helicase [Helicoverpa armigera NPV] gi|15384471|gb|AAK96382.1|AF303045_124 helicase [Helicoverpa armigera NPV] Length = 1253 Score = 51.8 bits (122), Expect = 4e-04, Method: Composition-based stats. Identities = 28/156 (17%), Positives = 55/156 (35%), Gaps = 13/156 (8%) Query: 485 YFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP 543 G +L + + + I++ G GSGKS+ +L++ + + + Sbjct: 938 LLMMHFGASLGIPTDYEKCCIYLNGEPGSGKSSFFDLLESIIVVHKRDADKYTL--SKKE 995 Query: 544 PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMT-GGDCMTARLNYGNTYSESPA 602 + +AN + +L NE E N + K + Y + A Sbjct: 996 TDEMEANKLISQLY--------VINELKECNDSFFKSTADSSKSNSVCRKY-QGSQKYEA 1046 Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN 638 ++ +V NK L + + D R+ V+ D Sbjct: 1047 NYKLLVVNNKPLHISDYDRGVRNRFCVVYTDHEFLE 1082 >gi|332235632|ref|XP_003267010.1| PREDICTED: DNA-binding protein RFX7 [Nomascus leucogenys] Length = 1363 Score = 51.8 bits (122), Expect = 5e-04, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 27/81 (33%), Gaps = 6/81 (7%) Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754 +WI + + + Y Y + N +S +K +K Sbjct: 13 SWIRNTLEEHPETSLPKQEVYDEYKSYCD---NLGYHPLSAADFGKIMKN--VFPNMKAR 67 Query: 755 KIEKEWKSKRIIKGLKLKPAF 775 ++ KSK GL+ K AF Sbjct: 68 RLGTRGKSKYCYSGLR-KKAF 87 >gi|327290873|ref|XP_003230146.1| PREDICTED: LOW QUALITY PROTEIN: DNA-binding protein RFX7-like [Anolis carolinensis] Length = 1558 Score = 51.8 bits (122), Expect = 5e-04, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 27/81 (33%), Gaps = 6/81 (7%) Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754 +WI + + + Y Y + N +S +K +K Sbjct: 138 SWIRNTLEEHPETSLPKQEVYDEYKSYCD---NLGYHPLSAADFGKIMKN--VFPNMKAR 192 Query: 755 KIEKEWKSKRIIKGLKLKPAF 775 ++ KSK GL+ K AF Sbjct: 193 RLGTRGKSKYCYSGLR-KKAF 212 >gi|326926581|ref|XP_003209477.1| PREDICTED: DNA-binding protein RFX7-like [Meleagris gallopavo] Length = 1401 Score = 51.8 bits (122), Expect = 5e-04, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 27/81 (33%), Gaps = 6/81 (7%) Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754 +WI + + + Y Y + N +S +K +K Sbjct: 123 SWIRNTLEEHPETSLPKQEVYDEYKSYCD---NLGYHPLSAADFGKIMKN--VFPNMKAR 177 Query: 755 KIEKEWKSKRIIKGLKLKPAF 775 ++ KSK GL+ K AF Sbjct: 178 RLGTRGKSKYCYSGLR-KKAF 197 >gi|297696718|ref|XP_002825529.1| PREDICTED: DNA-binding protein RFX7-like [Pongo abelii] Length = 1363 Score = 51.8 bits (122), Expect = 5e-04, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 27/81 (33%), Gaps = 6/81 (7%) Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754 +WI + + + Y Y + N +S +K +K Sbjct: 13 SWIRNTLEEHPETSLPKQEVYDEYKSYCD---NLGYHPLSAADFGKIMKN--VFPNMKAR 67 Query: 755 KIEKEWKSKRIIKGLKLKPAF 775 ++ KSK GL+ K AF Sbjct: 68 RLGTRGKSKYCYSGLR-KKAF 87 >gi|149636722|ref|XP_001514248.1| PREDICTED: similar to regulatory factor X domain containing 2 homolog [Ornithorhynchus anatinus] Length = 1500 Score = 51.8 bits (122), Expect = 5e-04, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 27/81 (33%), Gaps = 6/81 (7%) Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754 +WI + + + Y Y + N +S +K +K Sbjct: 139 SWIRNTLEEHPETSLPKQEVYDEYKSYCD---NLGYHPLSAADFGKIMKN--VFPNMKAR 193 Query: 755 KIEKEWKSKRIIKGLKLKPAF 775 ++ KSK GL+ K AF Sbjct: 194 RLGTRGKSKYCYSGLR-KKAF 213 >gi|148233185|ref|NP_001090849.1| regulatory factor X, 7 [Xenopus (Silurana) tropicalis] gi|126632049|gb|AAI33721.1| rfx7 protein [Xenopus (Silurana) tropicalis] Length = 1439 Score = 51.8 bits (122), Expect = 5e-04, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 27/81 (33%), Gaps = 6/81 (7%) Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754 +WI + + + Y Y + N +S +K +K Sbjct: 110 SWIRNTLEEHPETSLPKQEVYDEYKSYCD---NLGYHPLSAADFGKIMKN--VFPNMKAR 164 Query: 755 KIEKEWKSKRIIKGLKLKPAF 775 ++ KSK GL+ K AF Sbjct: 165 RLGTRGKSKYCYSGLR-KKAF 184 >gi|126277186|ref|XP_001368345.1| PREDICTED: similar to regulatory factor X domain containing 2 homolog [Monodelphis domestica] Length = 1455 Score = 51.8 bits (122), Expect = 5e-04, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 27/81 (33%), Gaps = 6/81 (7%) Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754 +WI + + + Y Y + N +S +K +K Sbjct: 110 SWIRNTLEEHPETSLPKQEVYDEYKSYCD---NLGYHPLSAADFGKIMKN--VFPNMKAR 164 Query: 755 KIEKEWKSKRIIKGLKLKPAF 775 ++ KSK GL+ K AF Sbjct: 165 RLGTRGKSKYCYSGLR-KKAF 184 >gi|118095718|ref|XP_429081.2| PREDICTED: similar to regulatory factor X domain containing 2 homolog [Gallus gallus] Length = 1537 Score = 51.8 bits (122), Expect = 5e-04, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 27/81 (33%), Gaps = 6/81 (7%) Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754 +WI + + + Y Y + N +S +K +K Sbjct: 178 SWIRNTLEEHPETSLPKQEVYDEYKSYCD---NLGYHPLSAADFGKIMKN--VFPNMKAR 232 Query: 755 KIEKEWKSKRIIKGLKLKPAF 775 ++ KSK GL+ K AF Sbjct: 233 RLGTRGKSKYCYSGLR-KKAF 252 >gi|114657201|ref|XP_001171418.1| PREDICTED: hypothetical protein isoform 1 [Pan troglodytes] Length = 1281 Score = 51.8 bits (122), Expect = 5e-04, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 27/81 (33%), Gaps = 6/81 (7%) Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754 +WI + + + Y Y + N +S +K +K Sbjct: 13 SWIRNTLEEHPETSLPKQEVYDEYKSYCD---NLGYHPLSAADFGKIMKN--VFPNMKAR 67 Query: 755 KIEKEWKSKRIIKGLKLKPAF 775 ++ KSK GL+ K AF Sbjct: 68 RLGTRGKSKYCYSGLR-KKAF 87 >gi|109081239|ref|XP_001090465.1| PREDICTED: DNA-binding protein RFX7 isoform 1 [Macaca mulatta] Length = 1280 Score = 51.8 bits (122), Expect = 5e-04, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 27/81 (33%), Gaps = 6/81 (7%) Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754 +WI + + + Y Y + N +S +K +K Sbjct: 13 SWIRNTLEEHPETSLPKQEVYDEYKSYCD---NLGYHPLSAADFGKIMKN--VFPNMKAR 67 Query: 755 KIEKEWKSKRIIKGLKLKPAF 775 ++ KSK GL+ K AF Sbjct: 68 RLGTRGKSKYCYSGLR-KKAF 87 >gi|34535225|dbj|BAC87248.1| unnamed protein product [Homo sapiens] Length = 1281 Score = 51.8 bits (122), Expect = 5e-04, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 27/81 (33%), Gaps = 6/81 (7%) Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754 +WI + + + Y Y + N +S +K +K Sbjct: 13 SWIRNTLEEHPETSLPKQEVYDEYKSYCD---NLGYHPLSAADFGKIMKN--VFPNMKAR 67 Query: 755 KIEKEWKSKRIIKGLKLKPAF 775 ++ KSK GL+ K AF Sbjct: 68 RLGTRGKSKYCYSGLR-KKAF 87 >gi|121946796|sp|Q2KHR2|RFX7_HUMAN RecName: Full=DNA-binding protein RFX7; AltName: Full=Regulatory factor X 7; AltName: Full=Regulatory factor X domain-containing protein 2 gi|86577734|gb|AAI12937.1| Regulatory factor X, 7 [Homo sapiens] Length = 1363 Score = 51.8 bits (122), Expect = 5e-04, Method: Composition-based stats. Identities = 16/81 (19%), Positives = 27/81 (33%), Gaps = 6/81 (7%) Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754 +WI + + + Y Y + N +S +K +K Sbjct: 13 SWIRNTLEEHPETSLPKQEVYDEYKSYCD---NLGYHPLSAADFGKIMKN--VFPNMKAR 67 Query: 755 KIEKEWKSKRIIKGLKLKPAF 775 ++ KSK GL+ K AF Sbjct: 68 RLGTRGKSKYCYSGLR-KKAF 87 >gi|296214091|ref|XP_002807241.1| PREDICTED: LOW QUALITY PROTEIN: DNA-binding protein RFX7-like [Callithrix jacchus] Length = 1444 Score = 51.8 bits (122), Expect = 5e-04, Method: Composition-based stats. Identities = 18/96 (18%), Positives = 28/96 (29%), Gaps = 6/96 (6%) Query: 680 LKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVT 739 A R +WI + + Y Y + N +S Sbjct: 95 QNAMSSSRAQQMHAFSWIRSTLEEHPETSLPKQEVYDEYKSYCD---NLGYHPLSAADFG 151 Query: 740 LNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAF 775 +K +K ++ KSK GL+ K AF Sbjct: 152 KIMKN--VFPNMKARRLGTRGKSKYCYSGLR-KKAF 184 >gi|150010082|ref|YP_001304825.1| hypothetical protein BDI_3502 [Parabacteroides distasonis ATCC 8503] gi|149938506|gb|ABR45203.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503] Length = 401 Score = 51.8 bits (122), Expect = 5e-04, Method: Composition-based stats. Identities = 37/246 (15%), Positives = 69/246 (28%), Gaps = 30/246 (12%) Query: 423 DSSSRFLGE---QDGILDLETGQKVKPTKELYITKSTGTPFVEGE-PSQEFLDLVSGYFE 478 D +L DG + +P + ++ + LV F Sbjct: 46 DYGKDYLATVPKYDGFCTVPNHVDYRPVVDKFLNLYEPIEHCPQQGEFPCIQSLVRHIFG 105 Query: 479 SE-EV-MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEAS 536 + E+ MDY L K + + +GKST +N +K F N Sbjct: 106 EQYELGMDYLQLLY---LQPVQKLPILLLVSEERNTGKSTFLNFLKALF-----QNNVTF 157 Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNT 596 + ++ + G ++++ E N ++ ++K ++ G Sbjct: 158 NTNEDFRSQFNS------DWAGKLLIVVDEVLLNRREDSERLKNLSTTLSYKVEAK-GKD 210 Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN---RDASFAQKLETKYTL 653 E + N D R + + I D F QKL Sbjct: 211 RDEIAFFAKFVLCSNNEYLPVIIDAGETR-----YWVRKIDRLQSDDTDFLQKL-KAEIP 264 Query: 654 EAKKWF 659 + Sbjct: 265 AFLHFL 270 >gi|123203698|ref|XP_001284398.1| hypothetical protein [Trichomonas vaginalis G3] gi|121845793|gb|EAX71468.1| hypothetical protein TVAG_535260 [Trichomonas vaginalis G3] Length = 194 Score = 51.8 bits (122), Expect = 5e-04, Method: Composition-based stats. Identities = 25/187 (13%), Positives = 55/187 (29%), Gaps = 15/187 (8%) Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620 + + +N+ +K + Y ++ + + N Sbjct: 6 CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDSRVCENVANFIMVSNNAVPMKLESS 65 Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679 D RRY+V+ +D + L T + + IP Sbjct: 66 D---RRYVVVR-TSDSHMQDTEYFDALSECLTSDFYNHLFSYFMTLDISNFNPRQIPHT- 120 Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738 + ++ + + +I++ + + SL Y +Y ++ Y S RT Sbjct: 121 -EERQTLLEANKSVYELFIEE----SDFECLDEKSLYDEYKQYCQE---YGYMPASKRTF 172 Query: 739 TLNLKQK 745 N+K Sbjct: 173 LANVKSL 179 >gi|253569515|ref|ZP_04846925.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] gi|251841534|gb|EES69615.1| conserved hypothetical protein [Bacteroides sp. 1_1_6] Length = 396 Score = 51.8 bits (122), Expect = 5e-04, Method: Composition-based stats. Identities = 40/304 (13%), Positives = 89/304 (29%), Gaps = 49/304 (16%) Query: 357 NFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFS 416 + + ++ + +P + K W N + K+ ++ F Sbjct: 4 EEYMRVGTTLYKVVNQPCASGGYEKRRVIWNN------STLRQDYGKNYLATVPKYDGFC 57 Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY 476 D L+ G + + ++ T ++ L+ Sbjct: 58 TVPDHLNYRKEIDGFLN------LYEPIEHTPQIG-------------DFPNIRSLMLHI 98 Query: 477 FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGS-GKSTLMNLIKYAFGNQYVINAEA 535 F E + + + L + + + + GKST +N +K FG+ N Sbjct: 99 FG--EQYNLGLDYLQLLFLQPLQKLPILLLVSEERNTGKSTFLNFLKAVFGDNVTFNTNE 156 Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595 Q G ++++ E N ++ ++K ++ G Sbjct: 157 DFRSQFN-----------SDWAGKLLIVVDEVLLNRREDSERLKNLSTTFNYKVEAK-GK 204 Query: 596 TYSESPASFTPFIVPNK--HLFVRNPDDA-WWRRYIVIPFDKPIANRDASFAQKLETKYT 652 +E + N + + + +W R I P+ + D +F QKL + Sbjct: 205 DRTEISFFAKFVLCSNNEYLPVIIDAGETRYWVRKI-----NPLQDDDTNFLQKL-KEEI 258 Query: 653 LEAK 656 Sbjct: 259 PAFL 262 >gi|154417165|ref|XP_001581603.1| hypothetical protein [Trichomonas vaginalis G3] gi|121915832|gb|EAY20617.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 194 Score = 51.8 bits (122), Expect = 5e-04, Method: Composition-based stats. Identities = 26/187 (13%), Positives = 54/187 (28%), Gaps = 15/187 (8%) Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620 + + +N+ +K + Y + + + N Sbjct: 6 CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESS 65 Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679 D RRY+V+ +D + L T + + IP Sbjct: 66 D---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPYT- 120 Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738 + ++ + + +ID+ + + SL Y +Y ++ Y S RT Sbjct: 121 -EERQTLLEANKSVYELFIDETNFVSLDE----RSLYDEYKQYCQE---YGYMAASKRTF 172 Query: 739 TLNLKQK 745 N+K Sbjct: 173 LANVKNL 179 >gi|283469593|emb|CAQ48804.1| virulence-associated E family protein [Staphylococcus aureus subsp. aureus ST398] gi|283470738|emb|CAQ49949.1| virulence-associated E family protein [Staphylococcus aureus subsp. aureus ST398] Length = 815 Score = 51.8 bits (122), Expect = 5e-04, Method: Composition-based stats. Identities = 36/216 (16%), Positives = 70/216 (32%), Gaps = 28/216 (12%) Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549 + + G K + + G G GKS L+ + + + EA Sbjct: 515 IARVMEPGCKFDYMLTLYGPQGVGKSALLKKL-----GGAWFSDSLVSVTGKEAYEA--- 566 Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609 L G ++ ++E + IK R+ YG+ + P Sbjct: 567 ------LQGVWLMEMAELAATRKAEVEAIKHFISKQVDRFRVAYGHYIEDFPRQCIFIGT 620 Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISK 669 NK F+R+ RR+ P + +++ KL + + K Y + Sbjct: 621 TNKVDFLRDETGG--RRFW--PMTVNPERVEVNWS-KLTKEEIDQIWAEA----KHYYEQ 671 Query: 670 G----LDVDIPEVCLKAKEEERQGTDTYQAWIDDCC 701 G L+ ++ E + + + + Y ID+ Sbjct: 672 GEELFLNPELEEEMRSIQNKHTEES-PYTGIIDEYL 706 >gi|123235002|ref|XP_001286680.1| hypothetical protein [Trichomonas vaginalis G3] gi|121852658|gb|EAX73750.1| hypothetical protein TVAG_557710 [Trichomonas vaginalis G3] Length = 194 Score = 51.8 bits (122), Expect = 5e-04, Method: Composition-based stats. Identities = 29/191 (15%), Positives = 54/191 (28%), Gaps = 23/191 (12%) Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620 + + +N+ +K + Y + + + N Sbjct: 6 CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNVVPMKLESS 65 Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679 D RRY+VI +D + L T + + IP Sbjct: 66 D---RRYVVIR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120 Query: 680 LKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIS 734 + ++ + + +ID +C D SL Y +Y ++ Y S Sbjct: 121 -EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDEYKQYCQE---YGYMAAS 168 Query: 735 TRTVTLNLKQK 745 RT N+K Sbjct: 169 KRTFLANVKNL 179 >gi|118102235|ref|XP_423395.2| PREDICTED: similar to Selenium binding protein 1 [Gallus gallus] Length = 935 Score = 51.8 bits (122), Expect = 5e-04, Method: Composition-based stats. Identities = 13/91 (14%), Positives = 31/91 (34%), Gaps = 9/91 (9%) Query: 683 KEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNL 742 E + WI + + + + +Y +Y + N + +S + Sbjct: 465 TAEYMHACN----WIRNHLEEHADTCLPKQDVYDAYRQYCD---NLCCRPLSAANFGKII 517 Query: 743 KQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773 ++ IK ++ +SK G++ K Sbjct: 518 RE--IFPNIKARRLGGRGQSKYCYSGIRRKT 546 >gi|168697886|ref|ZP_02730163.1| hypothetical protein GobsU_00080 [Gemmata obscuriglobus UQM 2246] Length = 1454 Score = 51.8 bits (122), Expect = 5e-04, Method: Composition-based stats. Identities = 17/182 (9%), Positives = 35/182 (19%), Gaps = 41/182 (22%) Query: 7 KEQAKQAIHNGFKLIPLR----------------LGDKRPQRLGKWEEQLLSSEKIDKLP 50 E + G+ +P+ + W + E Sbjct: 5 AEAVARYRARGWCTVPVHRPDLDRGACSCGRPDCPKPGKHPDARFWPGGTAAPE---HFA 61 Query: 51 ACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPK-ILIPFRMN 109 G G L D+D + A L G+ + + + Sbjct: 62 GRNVGVKLGPNSAGLADVDLDCGEAAVA------GPHLLPATNSAFGRGGETTHRLYAVT 115 Query: 110 K--EGIKKKKTT---ESTQGHLDILG------CGQ----YFVAYNIHPKTKKEYTWTTPP 154 K +++ G+ V + + W Sbjct: 116 DRTAAFAKLLDPVRSGDRATIVELRWPEWDEAEGRFKHLQTVFPPSLHASGEGLEWARAG 175 Query: 155 HR 156 Sbjct: 176 EP 177 >gi|123320416|ref|XP_001293245.1| hypothetical protein [Trichomonas vaginalis G3] gi|121869838|gb|EAX80315.1| hypothetical protein TVAG_384930 [Trichomonas vaginalis G3] Length = 194 Score = 51.8 bits (122), Expect = 5e-04, Method: Composition-based stats. Identities = 29/191 (15%), Positives = 55/191 (28%), Gaps = 23/191 (12%) Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620 + + +N+ +K + Y + + + N Sbjct: 6 CNELQSIDTTKVLNSDALKSLITDKVGVVERKYRDQRVCENVANFVMVSNNAVPMKLESS 65 Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679 D RRY+V+ +D + L T + + IP Sbjct: 66 D---RRYVVVR-TSEAHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120 Query: 680 LKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIS 734 + ++ + + +ID +C D SL SY +Y ++ Y S Sbjct: 121 -EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDSYKQYCQE---YGYMTAS 168 Query: 735 TRTVTLNLKQK 745 RT N+K Sbjct: 169 KRTFLANVKSL 179 >gi|123206191|ref|XP_001284861.1| hypothetical protein [Trichomonas vaginalis G3] gi|121847232|gb|EAX71931.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 194 Score = 51.8 bits (122), Expect = 5e-04, Method: Composition-based stats. Identities = 29/191 (15%), Positives = 55/191 (28%), Gaps = 23/191 (12%) Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620 + + +N+ +K + Y + + + N Sbjct: 6 CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNVVPMKLESS 65 Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679 D RRY+V+ +D + L T + + IP Sbjct: 66 D---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120 Query: 680 LKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIS 734 + ++ + + +ID +C D SL SY +Y ++ Y S Sbjct: 121 -EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDSYKQYCQE---YGYMAAS 168 Query: 735 TRTVTLNLKQK 745 RT N+K Sbjct: 169 KRTFLANVKSL 179 >gi|123318106|ref|XP_001292847.1| hypothetical protein [Trichomonas vaginalis G3] gi|121868901|gb|EAX79917.1| hypothetical protein TVAG_457630 [Trichomonas vaginalis G3] Length = 194 Score = 51.8 bits (122), Expect = 5e-04, Method: Composition-based stats. Identities = 25/187 (13%), Positives = 54/187 (28%), Gaps = 15/187 (8%) Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620 + + +N+ +K + Y + + + N Sbjct: 6 CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNTVPMKLESS 65 Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679 D RRY+V+ +D + L T + + IP Sbjct: 66 D---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120 Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738 + ++ + + +I++ + + SL Y +Y ++ Y S RT Sbjct: 121 -EERQTLLEANKSVYELFIEE----SDFECLDEKSLYDEYKQYCQE---YGYMTASKRTF 172 Query: 739 TLNLKQK 745 N+K Sbjct: 173 LANVKSL 179 >gi|123193646|ref|XP_001282874.1| hypothetical protein [Trichomonas vaginalis G3] gi|121841094|gb|EAX69944.1| hypothetical protein TVAG_500330 [Trichomonas vaginalis G3] Length = 194 Score = 51.4 bits (121), Expect = 5e-04, Method: Composition-based stats. Identities = 26/187 (13%), Positives = 54/187 (28%), Gaps = 15/187 (8%) Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620 + + +N+ +K + Y + + + N Sbjct: 6 CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNVVPMKLESS 65 Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679 D RRY+V+ +D + L T + + IP Sbjct: 66 D---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120 Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738 + ++ + + +ID+ + + SL Y +Y ++ Y S RT Sbjct: 121 -EERQTLLEANKSVYELFIDE----TDFECLDERSLYDEYKQYCQE---YGYMTASKRTF 172 Query: 739 TLNLKQK 745 N+K Sbjct: 173 LANVKNL 179 >gi|315652660|ref|ZP_07905637.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986] gi|315485104|gb|EFU75509.1| conserved hypothetical protein [Eubacterium saburreum DSM 3986] Length = 2509 Score = 51.4 bits (121), Expect = 5e-04, Method: Composition-based stats. Identities = 42/415 (10%), Positives = 106/415 (25%), Gaps = 28/415 (6%) Query: 19 KLIPLRLGDK--RPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEK 76 +P+ L K + W + + K G GF G DID ++ Sbjct: 35 TKMPIMLNGKPAKSNDKKTWNSYKDCMDALCKNQGTGLGFFLG---DGYIGIDIDKVSDE 91 Query: 77 TANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQ--GHLDILGCGQY 134 D +R + P + I K K + +L+I ++ Sbjct: 92 IMEYSIDLNAASMTADFLRGISTYAEISPSKTGLHFIGKGKVPGERKRYKNLEIYDRDRF 151 Query: 135 FVAYN-IHPKTKKEYTWTTPPHRFKV--EDTPLLSEEDVEYLFKFFQEITVPLVKDKKSI 191 F I + + P + + + ++ Sbjct: 152 FTITGNILKDKDRSKIVNINQELLPLYKTYMPSIDSVEGKAGRINLIPSSLAYKNRFSQD 211 Query: 192 IPSKTWTNNNNRQYTNREITA-FLSCFGEEFYNGSHDEWIPVVMAVHHETR--------- 241 N Y+ ++ + + F + S ++ + +++ + Sbjct: 212 DILNILFNRRYFNYSGEDLRQIYNGNYQNYFNSRSEADFFMLGRLLYYTSDVEKSISLME 271 Query: 242 GSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKG 301 S + + + + Y + + + K T + +G Sbjct: 272 NSGLKRNKWYK-RRGSTDYIHYIADRAMNGIRKFYDWNKEKDNITKNAKQEETENKKKEG 330 Query: 302 LLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVS 361 + ++ N + + K N Y +S S + Sbjct: 331 KMPRYSTEKINDILSHSL--EEIRRDVSAYKDFLKTMGNNYKYSYMHQLSIYSTYKRATA 388 Query: 362 MKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFS 416 E + + ++ K +++ + +Q++ G+ + Sbjct: 389 CAE-----YDFWKKLGRSVKRGEKGIPILDLSRSIPKVKYVFDVSQTVSIGNKIN 438 >gi|123184135|ref|XP_001281039.1| hypothetical protein [Trichomonas vaginalis G3] gi|121834741|gb|EAX68109.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 194 Score = 51.4 bits (121), Expect = 5e-04, Method: Composition-based stats. Identities = 27/187 (14%), Positives = 56/187 (29%), Gaps = 15/187 (8%) Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620 + + +N+ +K + Y + + + N Sbjct: 6 CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFVMVSNNAVPMKLESS 65 Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679 D RRY+V+ +D + L T + + IP Sbjct: 66 D---RRYVVVR-TSEAHMQDTEYFDALSETLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120 Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738 + ++ + + +ID+ + + + SL SY +Y ++ Y S RT Sbjct: 121 -EERQTLLEANKSVYELFIDE----TDFVSLDERSLYDSYKQYCQE---YGYMTASKRTF 172 Query: 739 TLNLKQK 745 N+K Sbjct: 173 LANVKSL 179 >gi|167835892|ref|ZP_02462775.1| hypothetical protein Bpse38_05335 [Burkholderia thailandensis MSMB43] Length = 950 Score = 51.4 bits (121), Expect = 5e-04, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 22/66 (33%), Gaps = 2/66 (3%) Query: 212 AFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDT 271 S D W MA+ E +G + WS+ Y+ ++ W + Sbjct: 5 ERASVALGYVPADDRDTWRQAGMALKAEF--GEEGFALWNEWSQGAQNYNAKDACDVWKS 62 Query: 272 FDFEEI 277 F +I Sbjct: 63 FKGGKI 68 >gi|109521897|ref|YP_655334.1| gp57 [Mycobacterium phage Pipefish] gi|88910628|gb|ABD58554.1| gp57 [Mycobacterium phage Pipefish] Length = 871 Score = 51.4 bits (121), Expect = 5e-04, Method: Composition-based stats. Identities = 37/361 (10%), Positives = 79/361 (21%), Gaps = 89/361 (24%) Query: 7 KEQAKQAIHNGFKLIPLRLGDKRPQRLG----------------------KW-------- 36 + ++A G L+ + K+P + W Sbjct: 27 RAFVREACKQGLALLLIHPQSKQPADMRTARQKNDADKAAQQAARDAGHRNWDKVKSPSG 86 Query: 37 -----EEQLLSSEKIDKL-----PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFE 86 + + + +D+ P VG L D D+ ++ Sbjct: 87 LALASSDAKVVLKYLDRYIKVHGPDVPVNLAIEVGASRLVVVDCDTPEQYAKFLEVSKAP 146 Query: 87 ILHGTPIVRIGQKPK-------------ILIPFRMNKEGIKKKKTTESTQGHLD----IL 129 ++ GQ K + EG++ + + + +L Sbjct: 147 AGTPATVMTPGQVGKGDSDDPDTWTHRDGGHFYFTLPEGVELPDSIGALTWGGEDGFAVL 206 Query: 130 GCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKK 189 +Y + Y T + + +E + + + + Sbjct: 207 WNRRYVLIPPSTRPEG-AYELTGRDY--------EIPGWLLEKIVDAGNRRAERMAEQRT 257 Query: 190 SIIPSKTWTNNN-NRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKE 248 + + + +A L H R S G Sbjct: 258 RSGDDEDDLASAIDEWAETVPWSAILEPL---------------GWTPH--PRADSCGCP 300 Query: 249 IA----RRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRS-TFTSLFYHHGKLIPKGLL 303 + S + +T + T + F HG L Sbjct: 301 VWTGPGDHASPKSATAHDSGCALGRYTETNAPLHFWTDNPDPPFDKWCEKHGVKTISKLQ 360 Query: 304 A 304 A Sbjct: 361 A 361 >gi|307546784|ref|YP_003899263.1| hypothetical protein HELO_4194 [Halomonas elongata DSM 2581] gi|307218808|emb|CBV44078.1| hypothetical protein HELO_4194 [Halomonas elongata DSM 2581] Length = 485 Score = 51.4 bits (121), Expect = 5e-04, Method: Composition-based stats. Identities = 44/341 (12%), Positives = 96/341 (28%), Gaps = 35/341 (10%) Query: 416 SITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP----SQEFLD 471 T + ++ + D L + G + L Sbjct: 105 RETFKEWQDHPWRMIAEEVVFDPAETV----DPRLSVNLYDGFKMEPDARGRAGCERILG 160 Query: 472 LVSGYFE-SEEVMDYFTRCVGMALL-GGNKAQRFIHIRGVGGSGKSTLMNLI-KYAFGNQ 528 V +E + + + + L G K + + G G+GKS L I K +G Sbjct: 161 HVWRLCGYRQEEFFWLLKWMALPLQKPGTKMATAVLVHGSEGTGKSLLFEGILKRIYGEY 220 Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588 + +A Q ++ + +L ++S + +K + G+ + Sbjct: 221 GITIGQAQLESQFTGWQSRRL-FALAE------EVVSRAEKAHYK--GVLKHVVTGEELQ 271 Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN-RDASFAQKL 647 SE F+ + + D RRY F + + + + L Sbjct: 272 INEKNMPLRSERNHVNFVFLSNSTVPLELDLGD---RRY----FVLHVEDVPPPEYFEAL 324 Query: 648 ETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGT-DTYQAWIDDC--CDIG 704 + + F + + AK+ + + ++ + D+G Sbjct: 325 AEEIDQGGVECFYRYLLDLDLADYKPHTKPPLSDAKQRLIDSSLSPARFFVHEWRAGDLG 384 Query: 705 -ENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQ 744 L K++ + E + K R + + Sbjct: 385 LPYGVVAVADLWKAFLRWCENTNEFKTK---QRWFCDEVAR 422 >gi|167465881|ref|ZP_02330970.1| phage / plasmid primase, P4 family protein [Paenibacillus larvae subsp. larvae BRL-230010] Length = 90 Score = 51.4 bits (121), Expect = 5e-04, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 37/93 (39%), Gaps = 10/93 (10%) Query: 674 DIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRI 733 +P++ + E + + A+ID+ + E + + SYS + + + + Sbjct: 1 TMPDIIKRELAEYEKMNNPVMAFIDEG---RKVENETTKEVYLSYSAWCYENG---LRPL 54 Query: 734 STRTVTLNLKQKGFIGGIKREKIEKEWKSKRII 766 S + + + GFI +K + K RI Sbjct: 55 SQIQFSREMCKHGFITKLK----KISGKPVRIF 83 >gi|149882954|ref|YP_001294891.1| DNA primase [Burkholderia phage BcepNY3] gi|148763605|gb|ABR10588.1| DNA primase [Burkholderia phage BcepNY3] Length = 824 Score = 51.4 bits (121), Expect = 5e-04, Method: Composition-based stats. Identities = 34/241 (14%), Positives = 62/241 (25%), Gaps = 40/241 (16%) Query: 460 FVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMA----LLGGNKAQRFIHIRGVGGSGKS 515 + + F + S+ + L G + G GG+GKS Sbjct: 510 WDGTQRLDTFFVDLCDALPSDALTATTQLLFAGIVKRQLQPGAPLPVVPVLIGPGGTGKS 569 Query: 516 TLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA 575 + + A A A + L +E + Sbjct: 570 YFVEQLAAAL---KFPQPPALAFTDTIRMTMEAATSGIAEL--------AEMSGMGRRET 618 Query: 576 AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP 635 +IK T T R Y S P F NKH + RR++ + F Sbjct: 619 EEIKLWTTDTSDTYRAPYERRPSAHPRRFALIGTANKHETNHDATG--NRRFMPV-FVNR 675 Query: 636 IANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPE-----VCLKAKEEERQGT 690 + W ++ ++ + P+ + +A ++ Sbjct: 676 PIDP-----------------NWHVEALQLFAEAKARFVEPDGEYARLVRRASALVKEYN 718 Query: 691 D 691 D Sbjct: 719 D 719 >gi|123237972|ref|XP_001287273.1| hypothetical protein [Trichomonas vaginalis G3] gi|121854403|gb|EAX74343.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 211 Score = 51.4 bits (121), Expect = 5e-04, Method: Composition-based stats. Identities = 33/205 (16%), Positives = 61/205 (29%), Gaps = 23/205 (11%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 GK N S+ + + + +N+ +K + Y + + Sbjct: 9 GKFNSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFV 68 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + N D RRY+V+ +D + L T + Sbjct: 69 MVSNNVVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDALSETLTSDFYNHLFSYFMTL 124 Query: 667 ISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSE 720 + IP + ++ + + +ID +C D SL SY + Sbjct: 125 DISKFNPRQIPHT--EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDSYKQ 174 Query: 721 YREQELNYDRKRISTRTVTLNLKQK 745 Y ++ Y S RT N+K Sbjct: 175 YCQE---YGYMTASKRTFLANVKSL 196 >gi|222148720|ref|YP_002549677.1| Prophage antirepressor protein [Agrobacterium vitis S4] gi|221735706|gb|ACM36669.1| Prophage antirepressor protein [Agrobacterium vitis S4] Length = 263 Score = 51.4 bits (121), Expect = 6e-04, Method: Composition-based stats. Identities = 16/120 (13%), Positives = 38/120 (31%), Gaps = 11/120 (9%) Query: 663 VKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYR 722 + GL + E K + + + +ID+C + + + Y ++ Sbjct: 155 AALWRELGLPMPKDETSDKERRQAQGLMKYVYDFIDECMVFDQKAEVTGKEVYQRYQQWS 214 Query: 723 EQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDNS 782 I + L + G +++ + G++LK + D +S Sbjct: 215 ATNNA---PYIMNSSFGRFLIRAGI--------VKRHVSTGSRYIGVRLKHHIQITDQSS 263 >gi|47842852|ref|NP_958158.2| gp51 [Burkholderia phage Bcep43] gi|47719040|gb|AAR89344.2| gp51 [Burkholderia phage Bcep43] Length = 873 Score = 51.4 bits (121), Expect = 6e-04, Method: Composition-based stats. Identities = 34/241 (14%), Positives = 62/241 (25%), Gaps = 40/241 (16%) Query: 460 FVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMA----LLGGNKAQRFIHIRGVGGSGKS 515 + + F + S+ + L G + G GG+GKS Sbjct: 559 WDGTQRLDTFFVDLCDALPSDALTATTQLLFAGIVKRQLQPGAPLPVVPVLIGPGGTGKS 618 Query: 516 TLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA 575 + + A A A + L +E + Sbjct: 619 YFVEQLAAAL---KFPQPPALAFTDTIRMTMEAATSGIAEL--------AEMSGMGRRET 667 Query: 576 AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP 635 +IK T T R Y S P F NKH + RR++ + F Sbjct: 668 EEIKLWTTDTSDTYRAPYERRPSAHPRRFALIGTANKHETNHDATG--NRRFMPV-FVNR 724 Query: 636 IANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPE-----VCLKAKEEERQGT 690 + W ++ ++ + P+ + +A ++ Sbjct: 725 PIDP-----------------NWHVEALQLFAEAKTRFVEPDGEYARLVRRASALVKEYN 767 Query: 691 D 691 D Sbjct: 768 D 768 >gi|23752361|ref|NP_705675.1| gp52 [Burkholderia phage Bcep781] gi|23507228|gb|AAN38051.1| gp52 [Burkholderia phage Bcep781] Length = 873 Score = 51.4 bits (121), Expect = 6e-04, Method: Composition-based stats. Identities = 34/241 (14%), Positives = 62/241 (25%), Gaps = 40/241 (16%) Query: 460 FVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMA----LLGGNKAQRFIHIRGVGGSGKS 515 + + F + S+ + L G + G GG+GKS Sbjct: 559 WDGTQRLDTFFVDLCDALPSDALTATTQLLFAGIVKRQLQPGAPLPVVPVLIGPGGTGKS 618 Query: 516 TLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA 575 + + A A A + L +E + Sbjct: 619 YFVEQLAAAL---KFPQPPALAFTDTIRMTMEAATSGIAEL--------AEMSGMGRRET 667 Query: 576 AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP 635 +IK T T R Y S P F NKH + RR++ + F Sbjct: 668 EEIKLWTTDTSDTYRAPYERRPSAHPRRFALIGTANKHETNHDATG--NRRFMPV-FVNR 724 Query: 636 IANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPE-----VCLKAKEEERQGT 690 + W ++ ++ + P+ + +A ++ Sbjct: 725 PIDP-----------------NWHVEALQLFAEAKTRFVEPDGEYARLVRRASALVKEYN 767 Query: 691 D 691 D Sbjct: 768 D 768 >gi|170016447|ref|YP_001727366.1| prophage Lp3 protein 7-like protein [Leuconostoc citreum KM20] gi|169803304|gb|ACA81922.1| prophage Lp3 protein 7-like protein [Leuconostoc citreum KM20] Length = 256 Score = 51.4 bits (121), Expect = 6e-04, Method: Composition-based stats. Identities = 20/184 (10%), Positives = 42/184 (22%), Gaps = 22/184 (11%) Query: 25 LGDKRPQRLGKWEEQLLSSEKIDKL-------PACGFGFVCGVGEQPLYAFDIDSKDEKT 77 K G + + +++ + G L DID Sbjct: 4 PNQKHNAVSGGYNNSFNNGDELSQWINSHPEYQDRNVGIDL--SRSNLIVVDIDKHKHNG 61 Query: 78 ANTFKDTFEILHGTP------IVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGC 131 + F+ P V + + + + K + + QG +D+L Sbjct: 62 MKSISAWFKSHDINPETIQDTYVERTASGGLHAFYLIPEGKTKPAEKVSALQG-VDLLTN 120 Query: 132 GQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSI 191 + ++ Y E E + T K + Sbjct: 121 KHGVIVAPSVI-NQQPYR-----AITPFETIQQAPEWVYQIANNRGSTNTPSNHKATRYS 174 Query: 192 IPSK 195 + Sbjct: 175 NIDR 178 >gi|209978844|ref|YP_002300587.1| helicase [Adoxophyes orana nucleopolyhedrovirus] gi|192758826|gb|ACF05361.1| helicase [Adoxophyes orana nucleopolyhedrovirus] Length = 1208 Score = 51.4 bits (121), Expect = 6e-04, Method: Composition-based stats. Identities = 47/341 (13%), Positives = 98/341 (28%), Gaps = 35/341 (10%) Query: 317 SIYKKGHFL---YTADTKAWYKKDKNNVYIWSLTLDKITA-----SIMNFLVSMKEDVFD 368 SIY K K++YK K Y + I N + + +++ + Sbjct: 714 SIYYKNFICMVATNKKEKSFYKYKKYAEYFFQNKYKIIDFLTDKFKYTNCITDLIDEISN 773 Query: 369 LSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTA-----QSLEAGSIFSITSDLLD 423 E + + D N +K + + ++ + + D Sbjct: 774 PYEFLKQIEDYVECNDDHAADDDDDDNNNIGNKMSEVSVNFWHEYCQSNYYITHYNIWWD 833 Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSG--YFESEE 481 + + D L+ + + + K + + ++ Sbjct: 834 K--LLIAKPDDTLN---EWCSRFYSRVILNKFDLKNYPTLFVQKIVAAYINFKVMTGFNA 888 Query: 482 VMDYFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540 V +L + + + I++ G GSGKST L++ + + I Sbjct: 889 VNSRVLSYFAASLAIPSDYDKFCIYLNGTPGSGKSTFYELLETFLVVHKHDSDQYKLIKD 948 Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIK--QMTGGDCMTARLNYGNTYS 598 + I + NE N + K + R +G+ Sbjct: 949 QTNDIE----------VDKLISQLYVINEMKVCNDSFFKTNSDSTKSNSVCRKYHGSQKY 998 Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR 639 E ++ I+ NK L + + D R+ +I D Sbjct: 999 E--GNYKMMIINNKPLHIIDYDKGVRNRFGIIYTDHKFEED 1037 >gi|123203170|ref|XP_001284266.1| hypothetical protein [Trichomonas vaginalis G3] gi|121845397|gb|EAX71336.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 194 Score = 51.4 bits (121), Expect = 6e-04, Method: Composition-based stats. Identities = 27/184 (14%), Positives = 55/184 (29%), Gaps = 15/184 (8%) Query: 564 ISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAW 623 + + +N+ +K + Y + + + N D Sbjct: 9 LQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESSD-- 66 Query: 624 WRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVCLKA 682 RRY+V+ +D + L T + + IP + Sbjct: 67 -RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT--EE 122 Query: 683 KEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLN 741 ++ + + +ID+ + + SL SY +Y ++ Y S RT N Sbjct: 123 RQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE---YGYMTASKRTFLAN 175 Query: 742 LKQK 745 +K Sbjct: 176 VKSL 179 >gi|114679948|ref|YP_758398.1| helicase [Leucania separata nuclear polyhedrosis virus] gi|39598679|gb|AAR28865.1| helicase [Leucania separata nuclear polyhedrosis virus] Length = 1251 Score = 51.4 bits (121), Expect = 6e-04, Method: Composition-based stats. Identities = 27/156 (17%), Positives = 49/156 (31%), Gaps = 12/156 (7%) Query: 485 YFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544 + + + I++ G GKS+ +L+ A + Sbjct: 942 LMMHFTASLAIPNDYEKLCIYLNGESNCGKSSFFDLLDTII--VAHKRDSAVYNTTKKET 999 Query: 545 EAGKANPSLIRLMGSRIVIISETNENDEINAAKIK-QMTGGDCMTARLNYGNTYSESPAS 603 + +AN + +L NE E N A K + Y + + A+ Sbjct: 1000 DEMEANKLISQLY--------VINEMKECNDAFFKNSADSSKSNSVCRKYEGSQ-KYEAN 1050 Query: 604 FTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR 639 + IV NK L +R+ D R+ V+ Sbjct: 1051 YKLLIVNNKPLCIRDYDKGVRNRFCVVYMKHVFVEN 1086 >gi|123167478|ref|XP_001279308.1| hypothetical protein [Trichomonas vaginalis G3] gi|121828534|gb|EAX66378.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 194 Score = 51.4 bits (121), Expect = 6e-04, Method: Composition-based stats. Identities = 26/187 (13%), Positives = 55/187 (29%), Gaps = 15/187 (8%) Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620 + +N+ +K + Y ++ + + N Sbjct: 6 CNEFQSIDTTKVLNSDALKSLITDKVGVVERKYKDSRVCENVANFIMVSNNAVPMKLESS 65 Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679 D RRY+V+ +D + L T E + IP Sbjct: 66 D---RRYVVVR-KSDSHMQDTEYFDALSEYLTPEFYNHLFSYFMTLDISKFNPRQIPHT- 120 Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738 + ++ + + ++D+ + + + SL Y +Y ++ Y S RT Sbjct: 121 -EERQTLLEANKSVYELFVDE----TDFVSLDERSLYDEYKQYCQE---YGYMAASKRTF 172 Query: 739 TLNLKQK 745 N+K Sbjct: 173 LANVKSL 179 >gi|300120062|emb|CBK19616.2| unnamed protein product [Blastocystis hominis] Length = 844 Score = 51.4 bits (121), Expect = 6e-04, Method: Composition-based stats. Identities = 47/367 (12%), Positives = 106/367 (28%), Gaps = 71/367 (19%) Query: 347 TLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTA 406 + + E + + +E + + + + + ++ + + Sbjct: 168 ARIEKATKENERKYFLHEQLKAIQKEMGG--DKDPKQNYLNMVNAKLEQMRKDHVSPAAI 225 Query: 407 QSLEAGS----IFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVE 462 ++E I D++ ++ P+ + Sbjct: 226 AAVEEEVQRLSFIDIQHAEFDTTQNYIN-----------------------WVINLPWTQ 262 Query: 463 GEPSQEFLDLVSGYFES-----EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTL 517 Q + ++V D + + L G+ A + + G G+GK+++ Sbjct: 263 HSEDQMNIQYAQQVLNDDHYGLKDVKDRILEFIAVGKLQGHIAGKVLCFVGPPGTGKTSI 322 Query: 518 MNLIKYAFGNQYV-----INAEASDIMQNRPPEAGKANPSLIRLMGSRIVI--ISETNEN 570 I A G +Y + + I +R G +I M V + +E Sbjct: 323 AKSIARALGREYCQFSVGGANDVAQIKGHRRTYIGSLPGKIIWCMKKAKVNNPLILIDEV 382 Query: 571 DEINAAKIKQMTG-----GDCMTA--RLNYGNTYSESPASF--TPFIVPNKHLFVRNPDD 621 D+I+A++ T GD +A + N E ++ PF + N D Sbjct: 383 DKISASRNVGFTDGRKEQGDPASALLEVLDPNQNKEFLDTYLDIPFDLSNVLFICTANDL 442 Query: 622 A-----WWRRYIVI-----------PFDKPIANRDASF-----AQKLETKYTLEAKKWFL 660 + R VI K ++ ++ T +L L Sbjct: 443 STVPQPLLDRMEVIRVSGYDYQEKLEISKRFLDKKVRIATGLEPERPTTPKSLAIADDAL 502 Query: 661 KGVKAYI 667 + + + Sbjct: 503 QSLIRWY 509 >gi|123232440|ref|XP_001286379.1| hypothetical protein [Trichomonas vaginalis G3] gi|121851780|gb|EAX73449.1| hypothetical protein TVAG_170960 [Trichomonas vaginalis G3] Length = 194 Score = 51.4 bits (121), Expect = 6e-04, Method: Composition-based stats. Identities = 26/187 (13%), Positives = 54/187 (28%), Gaps = 15/187 (8%) Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620 + + +N+ +K + Y + + + N Sbjct: 6 CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESS 65 Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679 D RRY+V+ +D + L T + + IP Sbjct: 66 D---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120 Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738 + ++ + + +ID+ + + SL Y +Y ++ Y S RT Sbjct: 121 -EERQTLLEANKSVYELFIDE----TDFECLDEKSLYDEYKQYCQE---YGYMAASKRTF 172 Query: 739 TLNLKQK 745 N+K Sbjct: 173 LANVKSL 179 >gi|123181948|ref|XP_001280563.1| hypothetical protein [Trichomonas vaginalis G3] gi|121833030|gb|EAX67633.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 181 Score = 51.4 bits (121), Expect = 6e-04, Method: Composition-based stats. Identities = 27/177 (15%), Positives = 54/177 (30%), Gaps = 15/177 (8%) Query: 571 DEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVI 630 +N+ +K + Y + + + N D RRY+V+ Sbjct: 3 KVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESSD---RRYVVV 59 Query: 631 PFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQG 689 +D + L T + + IP + ++ + Sbjct: 60 R-TSEAHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT--EERQTLLEA 116 Query: 690 TDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK 745 + +ID+ + + + SL SY +Y ++ Y S RT N+K Sbjct: 117 NKSVYELFIDE----TDFVSLDERSLYDSYKQYCQE---YGYMTASKRTFLANVKSL 166 >gi|162135108|ref|YP_001595849.1| hypothetical protein [Pseudomonas phage YuA] gi|161513955|emb|CAO77781.1| hypothetical protein [Pseudomonas phage YuA] Length = 803 Score = 51.4 bits (121), Expect = 6e-04, Method: Composition-based stats. Identities = 39/301 (12%), Positives = 92/301 (30%), Gaps = 28/301 (9%) Query: 457 GTPFVEGEPSQEFLDLVSGYF--ESEEVMDYFTRCVG-MALLGGNKAQRFIHIRGVGGSG 513 + GE FL+ + + E Y + M + + +RG G+G Sbjct: 442 ACDSLPGEKHLPFLNHIRDNVCSGNPEHFHYLVGWMARMVQHPDGPGEVAVVLRGRRGTG 501 Query: 514 KSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI 573 KS ++ FG Y+ +++ ++ + + L G D+ Sbjct: 502 KSFFAKVLGAMFGRHYLQVSDSKHLVGSF----NAHLRDTVLLFGDEAFFA-----GDKK 552 Query: 574 NAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVR-NPDDAWWRRYIVIPF 632 + + +K + + + + + P + N+ V D+ RR+ V+ Sbjct: 553 HESVLKTLVTEEHLVIEGKGVDAEAA-PNYVHLVLASNEDWVVPAGLDE---RRFFVMEV 608 Query: 633 DKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDT 692 + +D ++ ++++ + L + Y +V ++++ Sbjct: 609 GEG-HKQDHAYFKRIKDDLDNGGLEHLLHFLLTYDLSNYEVRQVPQTRALQDQKIMSMSP 667 Query: 693 YQAWIDDCC--------DIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQ 744 W+ + D SL Y + R +S L + Sbjct: 668 ETQWMYEKLWEGRLLKTDQDWRNKVVKDSLYDDYVNDLRDQGRNFR--MSRTGFGKFLSR 725 Query: 745 K 745 Sbjct: 726 A 726 >gi|288904658|ref|YP_003429879.1| hypothetical protein GALLO_0442 [Streptococcus gallolyticus UCN34] gi|288731383|emb|CBI12934.1| hypothetical protein, phage associated [Streptococcus gallolyticus UCN34] Length = 757 Score = 51.4 bits (121), Expect = 6e-04, Method: Composition-based stats. Identities = 21/142 (14%), Positives = 42/142 (29%), Gaps = 17/142 (11%) Query: 225 SHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKR 284 + W + MA+ HE WS+ + Y + KW TF+ E + Sbjct: 21 DYSTWCQIGMALKHE----GYTAMDWDNWSQADTRYKKGECFKKWTTFN--EEAGSVVTG 74 Query: 285 STFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIW 344 +T T L +G + + Y K W + + Sbjct: 75 ATITQLAKDNGWQPASNGRGDSHELDWEDTIDRDY-------QIVDKNWIESKEIREP-- 125 Query: 345 SLTLDKITASIMNFLVSMKEDV 366 + ++ +L ++ + Sbjct: 126 --LNWQPAQELIKYLETLFDST 145 >gi|123420351|ref|XP_001305741.1| hypothetical protein [Trichomonas vaginalis G3] gi|121887278|gb|EAX92811.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 194 Score = 51.4 bits (121), Expect = 6e-04, Method: Composition-based stats. Identities = 27/187 (14%), Positives = 55/187 (29%), Gaps = 15/187 (8%) Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620 + + +N+ +K + Y + + + N Sbjct: 6 CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESS 65 Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679 D RRY+V+ +D + L T + + IP Sbjct: 66 D---RRYVVVR-TSEAHMQDTEYFDALSETLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120 Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738 + ++ + + +ID+ + + SL SY +Y ++ Y S RT Sbjct: 121 -EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE---YGYMTASKRTF 172 Query: 739 TLNLKQK 745 N+K Sbjct: 173 LANVKSL 179 >gi|225076709|ref|ZP_03719908.1| hypothetical protein NEIFLAOT_01760 [Neisseria flavescens NRL30031/H210] gi|224951985|gb|EEG33194.1| hypothetical protein NEIFLAOT_01760 [Neisseria flavescens NRL30031/H210] Length = 868 Score = 51.4 bits (121), Expect = 7e-04, Method: Composition-based stats. Identities = 73/537 (13%), Positives = 130/537 (24%), Gaps = 115/537 (21%) Query: 272 FDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIY-----KKGHFLY 326 F E D R T + + + + + + ++Y KK + L Sbjct: 345 FGLVEGKDHGVNRKTGVTYTRKAMTVHFGKDVVDAWYEWGRAPVLTMYEINRLKKDYALI 404 Query: 327 TADTK-------AWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKN 379 A + + IW L ++ L + P K Sbjct: 405 QAVKNDDTQDMMERFIYLDGSASIWDNKLWRVVPEKAARLSMTPDGFKIWVNSPSRIVKR 464 Query: 380 SKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLE 439 F + +E Sbjct: 465 FDRLVFEPGRVLSDDYINIFRGMP-----IEPKFPI------------------------ 495 Query: 440 TGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF-ESEEVMDYFTRCVGMALLG-G 497 + + K+ + + L+L++ + ++Y + L G Sbjct: 496 --------PKEDMPKTNYELYRLFPEIKPILNLINHLCNGDYQQVEYILNWLAYPLQNVG 547 Query: 498 NKAQRFIHIRGV-GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRL 556 K + + G G+GKS I +Y D+ N Sbjct: 548 AKMTTAVVMHGHIHGAGKSFFFEEIVKPMYGEYGATYGQEDLESNYTANRS--------- 598 Query: 557 MGSRIVIIS--ETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHL 614 G I TN+ K M G M + + Y E+ F+ Sbjct: 599 -GKMFGIFEEVYTNQQKYNKTGSQKHMITGKTMRVERKFQDAYEEANHMNCVFLSNESQP 657 Query: 615 -FVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKG--- 670 + D RRY V+ +K + + FL Y++ G Sbjct: 658 FKIEEND----RRYFVVWPEKKLDKALRDEVLDCIGNDGVRLFYSFLLCWNFYLTYGQQE 713 Query: 671 -----------------LDVDIPEVCLKAKE--------EERQGTDTYQAW----IDD-- 699 D + P AK+ + Y W I D Sbjct: 714 TENEKRYEVIKLEEPVRFDPNTPPPMTAAKQNVISYGRYAWQT---FYSEWAGGGIKDLP 770 Query: 700 -CCDIGENLWEESHSLAKSYSEYREQELNYDR-KRISTRTVTLNLKQKGFIGGIKRE 754 CC I ++LW Y E+ Q + K + + + + K + Sbjct: 771 FCCCITDDLWL-------VYKEWCRQNGERETGKTKFLQHIAEKMPRARRWWRTKNK 820 >gi|123154109|ref|XP_001277956.1| hypothetical protein [Trichomonas vaginalis G3] gi|121823446|gb|EAX65026.1| hypothetical protein TVAG_595080 [Trichomonas vaginalis G3] Length = 181 Score = 51.4 bits (121), Expect = 7e-04, Method: Composition-based stats. Identities = 26/177 (14%), Positives = 53/177 (29%), Gaps = 15/177 (8%) Query: 571 DEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVI 630 +N+ +K + Y + + + N D RRY+V+ Sbjct: 3 KVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESSD---RRYVVV 59 Query: 631 PFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQG 689 +D + L T + + IP +A++ + Sbjct: 60 R-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIP--HTEARQTLLEA 116 Query: 690 TDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK 745 + +I++ + + SL Y +Y ++ Y S RT N+K Sbjct: 117 NKSVYELFIEE----SDFECLDEKSLYDEYKQYCQE---YGYMAASKRTFLANVKSL 166 >gi|238800245|gb|ABX56067.2| E1 [Macaca fascicularis papillomavirus type 3] Length = 627 Score = 51.4 bits (121), Expect = 7e-04, Method: Composition-based stats. Identities = 28/205 (13%), Positives = 67/205 (32%), Gaps = 36/205 (17%) Query: 461 VEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNL 520 +G + + + +++ E + + L G K I + G +GKS Sbjct: 412 DDGGDWRPIVQFLR--YQNVEFITFL-SAFKAFLKGIPKRS-CIVLYGPPNTGKS----- 462 Query: 521 IKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISE--TNENDEINAAKI 578 + ++ ++ L L +++ ++ + I+ + Sbjct: 463 -------YFGMSLMQFLQGSIISYVNSNSHFWLAPLAEAKVAMLDDATPQCWSYIDT-YM 514 Query: 579 KQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR----RYIVIPFDK 634 + + G+ M+ + N P I+ + V D WR R +V F++ Sbjct: 515 RSVLDGNPMSIDRKHKNL---IQMKCPPLIITSNT-NVGEDDR--WRYLHSRVVVFKFEQ 568 Query: 635 PIA-NRDASFAQKLETKYTLEAKKW 658 +++ + +L K W Sbjct: 569 TFPFDQNGNPVYELSDK------NW 587 >gi|307566128|ref|ZP_07628586.1| conserved hypothetical protein [Prevotella amnii CRIS 21A-A] gi|307345316|gb|EFN90695.1| conserved hypothetical protein [Prevotella amnii CRIS 21A-A] Length = 396 Score = 51.4 bits (121), Expect = 7e-04, Method: Composition-based stats. Identities = 37/233 (15%), Positives = 68/233 (29%), Gaps = 27/233 (11%) Query: 433 DGILDLETGQKVKPTKELYITKSTGTPFVEGE-PSQEFLDLVSGYFESE-EV-MDYFTRC 489 DG + +P + ++ E L+ F + E+ MDY Sbjct: 54 DGFCTVPNHVNYQPVIDKFLNLYEPIGHQPKEGEFLHIESLIRHIFGEQYELGMDYLQLL 113 Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549 L K + + +GKST +N +K F N N Q Sbjct: 114 Y---LQPVQKLPILLMVSEERNTGKSTFLNFLKAVFQNNVTFNTNEDFRSQFN------- 163 Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609 G ++++ E N ++ ++K ++ G E + Sbjct: 164 ----ADWAGKLLIVVDEVLLNRREDSERLKNLSTTLSYKVEAK-GKDRDEISFFAKFVLC 218 Query: 610 PNK--HLFVRNPDDA-WWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWF 659 N + + + +W R I + + D F QKL + Sbjct: 219 SNNELLPVIIDMGETRYWVRKI-----NRLESDDTDFLQKL-KAEIPAFLYFL 265 >gi|123239155|ref|XP_001287546.1| hypothetical protein [Trichomonas vaginalis G3] gi|121855163|gb|EAX74616.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 194 Score = 51.0 bits (120), Expect = 7e-04, Method: Composition-based stats. Identities = 25/187 (13%), Positives = 55/187 (29%), Gaps = 15/187 (8%) Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620 + + +N+ +K + Y + + + N Sbjct: 6 CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESS 65 Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679 D RRY+V+ +D + L T + + IP Sbjct: 66 D---RRYVVVR-TSDSHMQDTEYFDDLAEILTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120 Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738 + ++ + + ++D+ + + + SL Y +Y ++ Y S RT Sbjct: 121 -EERQTLLEANKSVYELFVDE----TDFVSLDEKSLYDEYKQYCQE---YGYMAASKRTF 172 Query: 739 TLNLKQK 745 N+K Sbjct: 173 LANVKSL 179 >gi|313668169|ref|YP_004048453.1| hypothetical protein NLA_8370 [Neisseria lactamica ST-640] gi|313005631|emb|CBN87071.1| hypothetical protein NLA_8370 [Neisseria lactamica 020-06] Length = 162 Score = 51.0 bits (120), Expect = 7e-04, Method: Composition-based stats. Identities = 22/98 (22%), Positives = 35/98 (35%), Gaps = 14/98 (14%) Query: 208 REITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNY 267 EI A LS G + D WI + AV E G + WS+ G +Y+ + Sbjct: 5 DEIRAALSHIGAD----DRDMWIRMGEAVKDEI--GEDGFHLWDEWSQTGGSYNARDAKA 58 Query: 268 KWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLAS 305 W +F + +LF+H + + Sbjct: 59 AWKSF--------KPGHISIGTLFHHARQNGWRPEKPY 88 >gi|123359290|ref|XP_001295770.1| hypothetical protein [Trichomonas vaginalis G3] gi|121874889|gb|EAX82840.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 194 Score = 51.0 bits (120), Expect = 7e-04, Method: Composition-based stats. Identities = 27/187 (14%), Positives = 57/187 (30%), Gaps = 15/187 (8%) Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620 + + +N+ +K + Y ++ + + N Sbjct: 6 CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDSRVCENVANFIMVSNNVVPMKLESS 65 Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679 D RRY+V+ +D + L T + + IP Sbjct: 66 D---RRYVVVR-TSDSHMQDTEYFDALSETLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120 Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738 + ++ + + +ID+ + + + SL SY +Y ++ Y S RT Sbjct: 121 -EERQTLLEANKSVYELFIDE----TDFVSLDERSLYDSYKQYCQE---YGYMAASKRTF 172 Query: 739 TLNLKQK 745 N+K Sbjct: 173 LANVKSL 179 >gi|190404525|ref|YP_001965289.1| N-terminal primase-polymerase (primpol)-domain containing protein [Amycolatopsis mediterranei] gi|300782291|ref|YP_003762582.1| hypothetical protein AMED_0358 [Amycolatopsis mediterranei U32] gi|161087211|gb|ABX56700.1| N-terminal primase-polymerase (primpol)-domain containing protein [Amycolatopsis mediterranei] gi|299791805|gb|ADJ42180.1| conserved hypothetical protein [Amycolatopsis mediterranei U32] Length = 318 Score = 51.0 bits (120), Expect = 7e-04, Method: Composition-based stats. Identities = 27/226 (11%), Positives = 47/226 (20%), Gaps = 49/226 (21%) Query: 12 QAIHNGFKLIPLRLGDK---------------------RPQRLGKWEEQLLSSEKIDKLP 50 + G+K+ P R G K P+ L + + + Sbjct: 16 EMAGRGWKVFPCRPGSKAALWHRQEHCRGGGVCADGHVTPESLAT-SDVERVAARWSDGV 74 Query: 51 ACGFGFVCGVGEQPLYAFDIDSK--------------DEKTANTFKDTFEILHGTPIVRI 96 A G L+ D D D + G Sbjct: 75 AYNIAVYPGP--SGLFILDCDIPKAARPGQPPARGEHDPDGWTQLQALAGQRGGPLPDTF 132 Query: 97 ---GQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTP 153 + F G + T + ++D G G Y +A Sbjct: 133 TLATPSGGRQLWFTAPP-GTLLRGTVKHVATNIDSRGWGTYGLAPGCVLLNGAY------ 185 Query: 154 PHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTN 199 D L V+ + + + + T Sbjct: 186 -ELIDDTDPVELPGWLVQANVERASGAISGRPEKPVAAPDAYTARA 230 >gi|227544802|ref|ZP_03974851.1| conserved hypothetical protein [Lactobacillus reuteri CF48-3A] gi|300908952|ref|ZP_07126415.1| conserved hypothetical protein [Lactobacillus reuteri SD2112] gi|227185235|gb|EEI65306.1| conserved hypothetical protein [Lactobacillus reuteri CF48-3A] gi|300894359|gb|EFK87717.1| conserved hypothetical protein [Lactobacillus reuteri SD2112] Length = 978 Score = 51.0 bits (120), Expect = 8e-04, Method: Composition-based stats. Identities = 59/496 (11%), Positives = 134/496 (27%), Gaps = 78/496 (15%) Query: 291 FYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTA-----DTKAWYKKDKNNVYIWS 345 + + + + +DA K FS +Y ++++VY Sbjct: 452 VWANENSRDPNTIIKKLNDALVKDRFSNLSIADKVYNDPATILVDNQLMALNEHHVYTAD 511 Query: 346 LTL------DKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEEN 399 I AS F+ + + +V++L + N F ++ + ++ Sbjct: 512 SKAVNSIIDKYIDASGKRFIRNSRNNVYELLNNNKYKNG---KLDIGFKSENQTIWIDNK 568 Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTP 459 + G+ ++ ++ ++ + + + Y + T Sbjct: 569 GVHTENPLLKKVGNYVNVDYINYEADKDLFNSEEY---SQVEAFLTHISDGYYRQIT--- 622 Query: 460 FVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMN 519 L L+ + ++ R + GV GSGK+ L Sbjct: 623 --------CMLALI--VLQDPNIVPTLRRA--------------FILYGVPGSGKTVLAK 658 Query: 520 LIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRL----MGSRIVIISETNENDEINA 575 L+ F + + +P+LI G ++ + + N Sbjct: 659 LLCKIFDEPNR---PSRILCSEPNINKVFTDPNLIDANDTKKGKLVLWFDDFQSDGRSNE 715 Query: 576 ------AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIV 629 I +T + T + Y + + N ++ R V Sbjct: 716 IKRNVGTVINAVTSNEAKTGAAKFQQ-YHDIKLPSLIVLSTNDVPQIK--HIGTVDRIFV 772 Query: 630 IPFDKPIANR---------DASFAQKLETKYTL-EAKKWFLKGVKAYISKGLDVDIPEVC 679 I K + + DA K + + + + I + Sbjct: 773 IKSSKRLTDDPNISFSSNIDAWINNKKVQEAFFCIILNTAVDILNMSKDE--AKSIFDKS 830 Query: 680 LKAKEEERQGTDTYQAWIDDCCDIGENLWE--ESHSLAKSYSEYREQELNYDRKRISTRT 737 A+ + +A+ ++ ++ L Y E E N+ + R Sbjct: 831 NSAQSALSNLNSSIEAFFEEQNITSLYDLVGMQAKKLFDVYLE---GEKNFA-YATTYRA 886 Query: 738 VTLNLKQKGFIGGIKR 753 ++ G K Sbjct: 887 FCDQIEGLGLNLRRKH 902 >gi|218131557|ref|ZP_03460361.1| hypothetical protein BACEGG_03177 [Bacteroides eggerthii DSM 20697] gi|217986489|gb|EEC52826.1| hypothetical protein BACEGG_03177 [Bacteroides eggerthii DSM 20697] Length = 334 Score = 51.0 bits (120), Expect = 8e-04, Method: Composition-based stats. Identities = 29/237 (12%), Positives = 67/237 (28%), Gaps = 24/237 (10%) Query: 64 PLYAFDIDSKDEKTANTFKDTFEILHGTPIV------RIGQKPKILIPFRMNKEGIKKKK 117 L DID KD + + +D L P + G +IP+ + Sbjct: 87 NLICIDIDGKDNPSISNIEDLKIKLGELPYIMYCGLSASGNGLFCIIPYADPTNHKNVFE 146 Query: 118 TTESTQGHLDILGCGQYFVAY---NIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLF 174 + ++ + I+ + T + Y P + Y Sbjct: 147 SIKNDFEEMGIIIDKSCGDICRLRFLSHDT-QPYVNKHAEVYM---SEPKSKAVEYIYKP 202 Query: 175 KFFQEITVPLVKDKKSII-------PSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSH- 226 K + P + PS + +++ LS + ++ Sbjct: 203 KQRSKTKPPKPQTILIPSVIETFLRPSNLVLESATPLTKKQKVERLLSEITRNQVDITYY 262 Query: 227 -DEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAK 282 ++WI + + + +G+ + + S YD + + ++ + Sbjct: 263 YNDWIAIGNIIKNMF--GEEGRALFHKVSSFYPNYDYDETDREYSAMIIGRYRYNSD 317 >gi|323340042|ref|ZP_08080308.1| RecA-family ATPase [Lactobacillus ruminis ATCC 25644] gi|323092548|gb|EFZ35154.1| RecA-family ATPase [Lactobacillus ruminis ATCC 25644] Length = 769 Score = 51.0 bits (120), Expect = 8e-04, Method: Composition-based stats. Identities = 22/103 (21%), Positives = 38/103 (36%), Gaps = 11/103 (10%) Query: 225 SHDEWIPVVMAVHHETRGSSKGKEIARRWSKQ-GSTYDEENFNYKWDTFDFEE---IGDT 280 ++ W+ V MA+ HE + WS++ + Y + KW+ FD + G T Sbjct: 19 DYNGWVQVGMALKHE----GYSVDDWDTWSQRDSARYHDGECERKWNGFDDDGQIVTGAT 74 Query: 281 AKKRSTFTSLFYHHGKLIPKGLL---ASRFSDAYNKAMFSIYK 320 K + H K + + A + Y + YK Sbjct: 75 ITKMAKDGGWTSAHSKENQQTMGWDDAVEAEERYTPTIDKDYK 117 >gi|222435726|ref|YP_002564154.1| gp56 [Mycobacterium phage Phlyer] gi|222088279|gb|ACM42220.1| gp56 [Mycobacterium phage Phlyer] Length = 867 Score = 51.0 bits (120), Expect = 8e-04, Method: Composition-based stats. Identities = 37/361 (10%), Positives = 79/361 (21%), Gaps = 89/361 (24%) Query: 7 KEQAKQAIHNGFKLIPLRLGDKRPQRLG----------------------KW-------- 36 + ++A G L+ + K+P + W Sbjct: 24 RAFVREACKQGLALLLIHPQSKQPADMRTVRQKNAADKAAQQAAREAGRRNWDKVKSPSG 83 Query: 37 -----EEQLLSSEKIDKL-----PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFE 86 + + + +D+ P VG L D D+ ++ Sbjct: 84 LALASSDAKVVLKYLDRYIEVHGPDVPVNLAIEVGASRLVVVDCDTPEQYAKFLEVSKAP 143 Query: 87 ILHGTPIVRIGQKPK-------------ILIPFRMNKEGIKKKKTTESTQGHLD----IL 129 ++ GQ K + EG++ + + + +L Sbjct: 144 AGTPATVMTPGQVGKGDSDDPDTWTHRDGGHFYFTLPEGVELPDSIGALTWGGEDGFAVL 203 Query: 130 GCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKK 189 +Y + Y T + + +E + + + + Sbjct: 204 WNRRYVLIPPSTRPEG-AYELTGRDY--------EIPGWLLETIVDAGNRRAERMAEQRT 254 Query: 190 SIIPSKTWTNNN-NRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKE 248 + + + +A L H R S G Sbjct: 255 RSGDDEDDLASAIDEWAETVPWSAILEPL---------------GWTPH--PRADSCGCP 297 Query: 249 IA----RRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRS-TFTSLFYHHGKLIPKGLL 303 + S + +T + T + F HG L Sbjct: 298 VWTGPGDHASPKSATAHDSGCALGRYTETNAPLHFWTDNPDPPFDEWCEKHGVKTISKLQ 357 Query: 304 A 304 A Sbjct: 358 A 358 >gi|73542996|ref|YP_297516.1| hypothetical protein Reut_A3313 [Ralstonia eutropha JMP134] gi|72120409|gb|AAZ62672.1| hypothetical protein Reut_A3313 [Ralstonia eutropha JMP134] Length = 444 Score = 51.0 bits (120), Expect = 8e-04, Method: Composition-based stats. Identities = 40/313 (12%), Positives = 99/313 (31%), Gaps = 47/313 (15%) Query: 469 FLDLVSGYFESEEVMDYFTRCVGMALL-GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 F F ++ + + + + + G+GK L+ I + Sbjct: 143 FHAYFERMFPAKHQRHIVLQWLAHIFRRPDQRPSWHLMLLSEPGTGKGFLVQNILQPLLH 202 Query: 528 QYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCM 587 + A S I L+ + ++++ + E ++K + Sbjct: 203 HTSVVASYSRITGKHS----------AVLVENLVILLDDCKSRSEATQTEMKSFLSEERA 252 Query: 588 TARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIV-------IPFDKPIANRD 640 Y + E + + +P++ RR+ + + + AN Sbjct: 253 LVERKYASAGMEDTYARMILASNEEIPLYVDPNE---RRWYIPDDVVHLVDLRETQANII 309 Query: 641 ASFAQKLETKYTL-EAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD 699 A L+ +L + WF++ V E + ++ + Y+ +I+D Sbjct: 310 QPLADWLDEPGSLCKVYNWFMQYPLDGF-NHKSVPESEGLTRLIDKSKG---PYRQYIED 365 Query: 700 CCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKE 759 + + + + Y++ E + + S R + L++ G+ +R Sbjct: 366 --------YVKDNKVFT-YADLVESMTDAKLSKPSDRELGHVLREIGYEATQRR------ 410 Query: 760 WKSKRIIKGLKLK 772 I G++L+ Sbjct: 411 ------IDGVRLR 417 >gi|123193985|ref|XP_001282953.1| hypothetical protein [Trichomonas vaginalis G3] gi|121841354|gb|EAX70023.1| hypothetical protein TVAG_557430 [Trichomonas vaginalis G3] Length = 194 Score = 51.0 bits (120), Expect = 8e-04, Method: Composition-based stats. Identities = 28/191 (14%), Positives = 54/191 (28%), Gaps = 23/191 (12%) Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620 + + +N+ +K + Y + + + N Sbjct: 6 CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNTVPMKLESS 65 Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679 D RRY+V+ +D + L T + + IP Sbjct: 66 D---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120 Query: 680 LKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIS 734 + ++ + + +ID +C D SL Y +Y ++ Y S Sbjct: 121 -EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDEYKQYCQE---YGYMTAS 168 Query: 735 TRTVTLNLKQK 745 RT N+K Sbjct: 169 KRTFLANVKSL 179 >gi|194303249|ref|YP_002014663.1| gp52 [Mycobacterium phage Phaedrus] gi|194150981|gb|ACF34016.1| gp52 [Mycobacterium phage Phaedrus] Length = 868 Score = 51.0 bits (120), Expect = 8e-04, Method: Composition-based stats. Identities = 36/361 (9%), Positives = 79/361 (21%), Gaps = 89/361 (24%) Query: 7 KEQAKQAIHNGFKLIPLRLGDKRPQRLG----------------------KW-------- 36 + ++A G L+ + K+P + W Sbjct: 24 RAFVREACKQGLALLLIHPQSKQPADMRTVRQKNAADKAAQQAAREAGRRNWDKVKSPSG 83 Query: 37 -----EEQLLSSEKIDKL-----PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFE 86 + + + +D+ P VG L D D+ ++ Sbjct: 84 LALASSDAKVVLKYLDRYIEVHGPDVPVNLAIEVGASRLVVVDCDTPEQYAKFLEVSKAP 143 Query: 87 ILHGTPIVRIGQKPK-------------ILIPFRMNKEGIKKKKTTESTQGHLD----IL 129 ++ GQ K + EG++ + + + +L Sbjct: 144 AGTPATVMTPGQVGKGDSDDPDTWTHRDGGHFYFTLPEGVELPDSIGALTWGGEDGFAVL 203 Query: 130 GCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKK 189 +Y + Y T + + ++ + + + + Sbjct: 204 WNRRYVLIPPSTRPEG-AYELTGRDY--------EIPGWLLDKIVDAGNRRAERMAEQRT 254 Query: 190 SIIPSKTWTNNN-NRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKE 248 + + + +A L H R S G Sbjct: 255 RSGDDEDDLASAIDEWAETVPWSAILEPL---------------GWTPH--PRADSCGCP 297 Query: 249 IA----RRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRS-TFTSLFYHHGKLIPKGLL 303 + S + +T + T + F HG L Sbjct: 298 VWTGPGDHASPKSATAHDSGCALGRYTETNAPLHFWTDNPDPPFDKWCEKHGVKTISKLQ 357 Query: 304 A 304 A Sbjct: 358 A 358 >gi|53721419|ref|YP_110404.1| hypothetical protein BPSS0382 [Burkholderia pseudomallei K96243] gi|52211833|emb|CAH37832.1| hypothetical protein BPSS0382 [Burkholderia pseudomallei K96243] Length = 955 Score = 51.0 bits (120), Expect = 8e-04, Method: Composition-based stats. Identities = 13/66 (19%), Positives = 21/66 (31%), Gaps = 2/66 (3%) Query: 212 AFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDT 271 S D W MA+ E +G + WS+ Y+ + W + Sbjct: 10 ERASVALGYVPADDRDTWRQAGMALKAEF--GEEGFTLWNEWSQGAQNYNVRDARDVWKS 67 Query: 272 FDFEEI 277 F +I Sbjct: 68 FKGGKI 73 >gi|91784038|ref|YP_559244.1| putative DNA replication primase [Burkholderia xenovorans LB400] gi|91687992|gb|ABE31192.1| Putative DNA replication primase [Burkholderia xenovorans LB400] Length = 621 Score = 51.0 bits (120), Expect = 9e-04, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 34/92 (36%), Gaps = 10/92 (10%) Query: 224 GSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKK 283 + W+ + A+ H +G EI WS+ + Y++ W + +A Sbjct: 22 DDYATWVDMAFALKHGF--GDEGFEIWDAWSRTAANYNDRAARTTWRS-------ASASG 72 Query: 284 RSTFTSLFYHHGKLIPKGLLASRFSDAYNKAM 315 T +LF+H + L + + D + Sbjct: 73 GKTLATLFWHARQHGFD-LSRTHYPDQMTAVL 103 >gi|114669868|ref|XP_001149361.1| PREDICTED: similar to mSUG1 protein isoform 2 [Pan troglodytes] Length = 387 Score = 50.7 bits (119), Expect = 9e-04, Method: Composition-based stats. Identities = 46/295 (15%), Positives = 87/295 (29%), Gaps = 30/295 (10%) Query: 368 DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSR 427 EE + + N + + E GS +D Sbjct: 26 SKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLREELQLLQEQGSYVGEVVRAMDKKKV 85 Query: 428 FLG-EQDGILDLETGQKVKP----TKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEV 482 + + + L K + V + L E +EV Sbjct: 86 LVKVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEV 145 Query: 483 MDY------FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEAS 536 ++ +G+A + + + G G+GK+ L + + + I S Sbjct: 146 IELPVKHPELFEALGIA------QPKGVLLYGPPGTGKTLLARAVAH-HTDCTFIRVSGS 198 Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR----LN 592 +++Q E + L + I +E D I +++++ +GGD R L Sbjct: 199 ELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELL 258 Query: 593 YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR--RY-IVIPFDKPIANRDASFA 644 E+ + + N+ + D A R R I F P N +A Sbjct: 259 NQLDGFEATKNIKVIMATNRIDIL---DSALLRPGRIDRKIEF--PPPNEEARLD 308 >gi|300361363|ref|ZP_07057540.1| prophage ps2 protein 15 [Lactobacillus gasseri JV-V03] gi|300353982|gb|EFJ69853.1| prophage ps2 protein 15 [Lactobacillus gasseri JV-V03] Length = 437 Score = 50.7 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 45/360 (12%), Positives = 109/360 (30%), Gaps = 44/360 (12%) Query: 424 SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEV- 482 + ++ +LD + + + + + +E+ Sbjct: 105 KDYTGVAFKNSLLDQAIQNVAYMNSYNPVIDYMNHAYAHWDKKRRLDKFFPEFLGAEDTE 164 Query: 483 ------MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEAS 536 +F V K + I G G GK++L+ I A Sbjct: 165 TTRLITRLFFMGVVAKIYKPETKFDFVLDIVGGQGVGKTSLLQNI-----------APLG 213 Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNT 596 K + + + IV E ++ ++K+ R Y Sbjct: 214 LYTDQFNSFTNKDDF--AVMKNAVIVNDDEMTASNAAKFEEVKKFITMQVFEYRKAYARK 271 Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAK 656 + F N+ +++ RR+I I +K + + L ++Y + Sbjct: 272 AEKFKKKFVMARTTNEVRHLKDRSGD--RRFISIYANKK--RQLKNPVTDLTSEYVEQLW 327 Query: 657 KWFLKGVKAYISKG-LDVDIPEVCLKAKEEERQGT---DTYQAWIDDCCDIGENLWEESH 712 + K L E+ + +E+ R + D +++ + + ++ Sbjct: 328 GEAVYLYKIAKDPFLLTPHQEELLKENREQFRYTSGLEDQLMDVLEN--QFKDKDFISNN 385 Query: 713 SLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLK 772 L S++ + + E + TR + ++ G+ G ++ I G++++ Sbjct: 386 DL--SFAVFADDEALNKNNK-DTRDIRYFMEHLGYRVGARKR-----------INGVRIR 431 >gi|321468365|gb|EFX79350.1| hypothetical protein DAPPUDRAFT_52572 [Daphnia pulex] Length = 399 Score = 50.7 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 47/303 (15%), Positives = 93/303 (30%), Gaps = 39/303 (12%) Query: 358 FLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSI 417 + V L EE + + +++ + + E + I Sbjct: 41 QRNELNAKVRMLREELQLLQEQGSYVGEVVKAMDKKKVLVKV--------HPEGKFVVDI 92 Query: 418 TS--DLLDSSSR-FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVS 474 D+ D + ++ L K + + P E + Sbjct: 93 DKNIDINDIKPNCRVALRNDSYTLHKILPSKVDPLVSLMMVEKVPDSTYEMVGGLDKQIK 152 Query: 475 GYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 +EV++ +G+A + + + G G+GK+ L + + + Sbjct: 153 EI---KEVIELPIKHPELFDALGIA------QPKGVLLYGPPGTGKTLLARAVAH-HTDC 202 Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588 I S+++Q E + L + I +E D I +++I+ +GGD Sbjct: 203 TFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEV 262 Query: 589 AR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR--RY-IVIPFDKPIANRDA 641 R L E+ + + N+ + D A R R I F P N +A Sbjct: 263 QRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DPALLRPGRIDRKIEF--PPPNEEA 317 Query: 642 SFA 644 Sbjct: 318 RLD 320 >gi|301299425|ref|ZP_07205704.1| primase C-terminal domain protein [Lactobacillus salivarius ACS-116-V-Col5a] gi|300852961|gb|EFK80566.1| primase C-terminal domain protein [Lactobacillus salivarius ACS-116-V-Col5a] Length = 752 Score = 50.7 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 45/149 (30%), Gaps = 27/149 (18%) Query: 210 ITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGST-YDEENFNYK 268 + L N + EW+ V MA+ +E WS++ ST Y + K Sbjct: 8 LLELLDYIDPSMLN--YQEWVNVGMALKYE----GYSVSDWDNWSQRDSTRYHDGETERK 61 Query: 269 WDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFS------------DAYNKAMF 316 W+TFD K T ++ K A D + + Sbjct: 62 WNTFDGST------KPVTGATITQLAKDNGWKPYSADSNDSFDWGDSFVASIDKGYQLIN 115 Query: 317 SIYKKGHFLYTADTKAWYKKDKNNVYIWS 345 Y G + K W + YI + Sbjct: 116 KDYIDGEKVLPP--KTWNPVKQITDYIET 142 >gi|259129701|gb|ACV95356.1| conserved hypothetical protein [Salmonella enterica subsp. enterica serovar 4,[5],12:i:-] Length = 327 Score = 50.7 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 38/280 (13%), Positives = 79/280 (28%), Gaps = 28/280 (10%) Query: 487 TRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEA 546 R + +L+ K I ++ V G+GK T + + G A I Sbjct: 44 WRTLSKSLM--KKPSVAIVMKSVPGTGKGTTVKPLLQILGQYAAHINGAGHISGRFNSI- 100 Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 L +V E + A ++K + + P Sbjct: 101 ---------LANKLLVFADEVTIHKPSEADRLKAIISEPTFNLERKGIDA-EPMPNFARL 150 Query: 607 FIVPNKHLFVRNPDDAWW-RRYIVIPFDKPIANRDASFAQKLET---KYTLEAKKWFLKG 662 N ++ RRY+V+ P + + +L + W LKG Sbjct: 151 IFASNSTQVLQ---AGIRERRYLVLE-PSPEKAQSREYFDRLYSWLNDGGAAKLLWHLKG 206 Query: 663 VKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE----NLWEESHSLAKSY 718 V G D +EE G + ++ + + + + Sbjct: 207 VDL---SGFDPQRAPQTDALREEILLGLSGVELFLYGELINEPPFNGEVRLFAKDMVSRF 263 Query: 719 SEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEK 758 + + ++ + + +L Q G + + ++ Sbjct: 264 VAWSLERGEKLKEPAARSLLGKSLAQMGLVKHGRPDRGNG 303 >gi|41057246|ref|NP_958272.1| hypothetical protein VWBp30 [Streptomyces phage VWB] gi|39656069|gb|AAR29720.1| hypothetical protein [Streptomyces phage VWB] Length = 193 Score = 50.7 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 16/133 (12%), Positives = 37/133 (27%), Gaps = 11/133 (8%) Query: 11 KQAIHNGFKLIPLRLGDKR--PQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAF 68 + + + + +PL +G W + + G GFV + Sbjct: 47 PRWVRHTARKVPLTVGGSVASSTDSSTWSRYR---DAVASSAGAGIGFVL--DGDGIVCL 101 Query: 69 DIDSKDEKTANTF--KDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHL 126 D+D + G V + + L + ++ G + Sbjct: 102 DLDHALDVDGEVLPWAQRIVEAAGATWVEVSRSGSGLHVWGRGSLPHGRR--IAVGSGSV 159 Query: 127 DILGCGQYFVAYN 139 ++ G G++ Sbjct: 160 ELYGTGRFIAVTG 172 >gi|326933520|ref|XP_003212850.1| PREDICTED: DNA-binding protein RFX5-like [Meleagris gallopavo] Length = 304 Score = 50.7 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 13/91 (14%), Positives = 30/91 (32%), Gaps = 9/91 (9%) Query: 683 KEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNL 742 E + WI + + + + +Y +Y + N +S + Sbjct: 88 TAEYMHACN----WIRNHLEEHADTCLPKQDVYDAYRQYCD---NLCCHPLSAANFGKII 140 Query: 743 KQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773 ++ IK ++ +SK G++ K Sbjct: 141 RE--IFPNIKARRLGGRGQSKYCYGGIRRKT 169 >gi|123192841|ref|XP_001282682.1| hypothetical protein [Trichomonas vaginalis G3] gi|121840481|gb|EAX69752.1| hypothetical protein TVAG_548620 [Trichomonas vaginalis G3] Length = 179 Score = 50.7 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 29/191 (15%), Positives = 56/191 (29%), Gaps = 15/191 (7%) Query: 567 TNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRR 626 + +N+ +K + Y + + + N D RR Sbjct: 1 IDTTKVLNSDALKSLITDLVGVVERKYRDQRVCENVANFVMVSNNAVPMKLESSD---RR 57 Query: 627 YIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVCLKAKEE 685 Y+V+ +D + L T + IP + ++ Sbjct: 58 YVVVR-TSEAHMQDTEYFDDLAETLTPNFYNHLFSYFMTLDISKFNPRQIP--HTEERQT 114 Query: 686 ERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQ 744 + + +ID+ + + SL SY +Y ++ Y S RT N+K Sbjct: 115 LLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE---YGYMTASKRTFLANVKN 167 Query: 745 KGFIGGIKREK 755 + K K Sbjct: 168 LLDVRNGKYRK 178 >gi|126726228|ref|ZP_01742070.1| hypothetical protein RB2150_08468 [Rhodobacterales bacterium HTCC2150] gi|126727536|ref|ZP_01743369.1| hypothetical protein RB2150_09534 [Rhodobacterales bacterium HTCC2150] gi|126703126|gb|EBA02226.1| hypothetical protein RB2150_09534 [Rhodobacterales bacterium HTCC2150] gi|126705432|gb|EBA04523.1| hypothetical protein RB2150_08468 [Rhodobacterales bacterium HTCC2150] Length = 581 Score = 50.7 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 23/166 (13%), Positives = 49/166 (29%), Gaps = 16/166 (9%) Query: 472 LVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRG--VGGSGKSTLMNLIKYAFGNQY 529 ++ E + +L + + G+GKST+ +++ FG Q Sbjct: 193 FLNFAIEDTGQQTVLLDWIAWSLQHEASKPTWAILLFSEEKGTGKSTIGVVLEALFGAQN 252 Query: 530 VINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK-IKQMTGGDCMT 588 + D + + R++ ++++ E + + +K + D T Sbjct: 253 TAKLDGVDKLVATHND---------RVLDKKLIVAEEVHISSHSKTGNALKDLITSDRTT 303 Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK 634 Y P N + RRY +I Sbjct: 304 VNPKY-QAMKTIPLKACYLFTTNHKPLWLEGGE---RRYYIIEMKH 345 >gi|256841206|ref|ZP_05546713.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|256737049|gb|EEU50376.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 415 Score = 50.7 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 32/208 (15%), Positives = 61/208 (29%), Gaps = 25/208 (12%) Query: 457 GTPFVEGE-PSQEFLDLVSGYFESE-EV-MDYFTRCVGMALLGGNKAQRFIHIRGVGGSG 513 E LV F + E+ MDY L K + + +G Sbjct: 97 PIDHRPQEGDLSHIQSLVQHIFGEQYELGMDYLQLLY---LQPIQKLPILLLVSEERNTG 153 Query: 514 KSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI 573 KST +N +K F N + ++ + G ++++ E N Sbjct: 154 KSTFLNFLKALF-----QNNVTFNTNEDFRSQFNS------DWAGKLLIVVDEVLLNRRE 202 Query: 574 NAAKIKQMTGGDCMTARLNYGN-TYSESPASFTPFIVPNKHLFVRNPDDA-WWRRYIVIP 631 ++ ++K ++ + A F + + + +W R I Sbjct: 203 DSERLKNLSTTLSYKVEAKGKDRDEIAFFAKFVLCSNNEHLPVIIDAGETRYWVRKI--- 259 Query: 632 FDKPIANRDASFAQKLETKYTLEAKKWF 659 + + D F QKL + Sbjct: 260 --NRLQSDDTDFLQKL-KAEIPAFLHFL 284 >gi|158335425|ref|YP_001516597.1| hypothetical protein AM1_2272 [Acaryochloris marina MBIC11017] gi|158305666|gb|ABW27283.1| hypothetical protein AM1_2272 [Acaryochloris marina MBIC11017] Length = 519 Score = 50.7 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 23/162 (14%), Positives = 45/162 (27%), Gaps = 31/162 (19%) Query: 8 EQAKQAIHNGFKLIPLRLGD-------KRPQRLG-----------KWEEQLLSSEKIDKL 49 + A + G +P+ K P L +++ + + +ID Sbjct: 16 DVAIGYLDLGSSPLPVAPKQPNSNFNGKNPSYLDEQGKAYLISSKQYQNKQPTRTEIDLW 75 Query: 50 ---PACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTP-------IVRIGQK 99 P G G + G L+ D+D+K + + + R Sbjct: 76 FANPENGIGIL---GNNHLHIVDVDTKHFDSKEVCEQVVNKWLDKHSQLHDAQVERTLSD 132 Query: 100 PKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIH 141 + G + +E +I G Q+ V Sbjct: 133 GFHIYVEFAEPPGFTRFAFSEGGSHVGEIQGPNQFTVVAPTV 174 >gi|198275330|ref|ZP_03207861.1| hypothetical protein BACPLE_01491 [Bacteroides plebeius DSM 17135] gi|212691219|ref|ZP_03299347.1| hypothetical protein BACDOR_00710 [Bacteroides dorei DSM 17855] gi|298383992|ref|ZP_06993553.1| conserved hypothetical protein [Bacteroides sp. 1_1_14] gi|198271913|gb|EDY96183.1| hypothetical protein BACPLE_01491 [Bacteroides plebeius DSM 17135] gi|212666451|gb|EEB27023.1| hypothetical protein BACDOR_00710 [Bacteroides dorei DSM 17855] gi|298263596|gb|EFI06459.1| conserved hypothetical protein [Bacteroides sp. 1_1_14] Length = 415 Score = 50.7 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 47/322 (14%), Positives = 80/322 (24%), Gaps = 55/322 (17%) Query: 345 SLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKS 404 + L K + + ++ L +P N K W N K Sbjct: 11 NEVLMKQGNFENEEFIRVGTTLYKLVNQPRLNGGYVKKRIVWNNE------TLRQDYGKD 64 Query: 405 TAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVK--PTKELYITKSTGTPFVE 462 ++ F D +D ++D + Sbjct: 65 YLATVPKYDGFCTVPDHVDYRP--------VVDKFLNLYEPIGHRP-------------Q 103 Query: 463 GEPSQEFLDLVSGYFESE-EV-MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNL 520 LV F + E+ MDY L K + + +GKST +N Sbjct: 104 QGEFPCIRSLVRHIFGEQYELGMDYLQLLY---LQPVQKLPILLLVSEERNTGKSTFLNF 160 Query: 521 IKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQ 580 +K F N N Q G ++++ E N ++ ++K Sbjct: 161 LKAVFQNNVTFNTNEDFRSQFN-----------SDWAGKLLIVVDEVLLNRREDSERLKN 209 Query: 581 MTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN-- 638 ++ G E + N D R + + I Sbjct: 210 LSTTLSYKVEAK-GKDRDEIAFFAKFVLCSNNEYLPVIIDAGETR-----YWVRKIDRLQ 263 Query: 639 -RDASFAQKLETKYTLEAKKWF 659 D F QKL + Sbjct: 264 SDDTDFLQKL-KAEIPAFLYYL 284 >gi|189521400|ref|XP_688865.3| PREDICTED: DNA-binding protein RFX7-like [Danio rerio] Length = 1466 Score = 50.7 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 13/79 (16%), Positives = 24/79 (30%), Gaps = 5/79 (6%) Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754 +WI + + + Y Y + +S +K +K Sbjct: 96 SWIRNHLEEHPETSLPKQEVYDEYKSYCDS---LGYHALSAADFGKIMKN--VFPNMKAR 150 Query: 755 KIEKEWKSKRIIKGLKLKP 773 ++ KSK GL+ K Sbjct: 151 RLGMRGKSKYCYSGLRKKT 169 >gi|112943754|gb|ABI26321.1| hypothetical protein lr1428 [Lactobacillus reuteri] Length = 978 Score = 50.7 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 59/496 (11%), Positives = 134/496 (27%), Gaps = 78/496 (15%) Query: 291 FYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTA-----DTKAWYKKDKNNVYIWS 345 + + + + +DA K FS +Y ++++VY Sbjct: 452 VWANENSRDPNTIIKKLNDALVKDRFSNLSIADKVYNDPATILVDNQLMALNEHHVYTAD 511 Query: 346 LTL------DKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEEN 399 I AS F+ + + +V++L + N F ++ + ++ Sbjct: 512 SKAVNSIIDKYIDASGKRFIRNSRNNVYELLNNNKYKNG---KLDIGFKSENQTIWIDNK 568 Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTP 459 + G+ ++ ++ ++ + + + Y + T Sbjct: 569 GVHTENPLLKKVGNYVNVDYINYEADKDLFNSEEY---SQVEAFLTHISDGYYRQIT--- 622 Query: 460 FVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMN 519 L L+ + ++ R + GV GSGK+ L Sbjct: 623 --------CMLALI--VLQDPNIVPTLRRA--------------FILYGVPGSGKTVLAK 658 Query: 520 LIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRL----MGSRIVIISETNENDEINA 575 L+ F + + +P+LI G ++ + + N Sbjct: 659 LLCKIFDEPNR---PSRILCSEPNINKVFTDPNLIDANDTKKGKLVLWFDDFQSDGRSNE 715 Query: 576 ------AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIV 629 I +T + T + Y + + N ++ R V Sbjct: 716 IKRNVGKVINAVTSNEAKTGAAKFQQ-YHDIKLPSLIVLSTNDVPQIK--HIGTVDRIFV 772 Query: 630 IPFDKPIANR---------DASFAQKLETKYTL-EAKKWFLKGVKAYISKGLDVDIPEVC 679 I K + + DA K + + + + I + Sbjct: 773 IKSSKRLTDDPNISFSSNIDAWINNKKVQEAFFCIILNTAVDILNMSKDE--AKSIFDKS 830 Query: 680 LKAKEEERQGTDTYQAWIDDCCDIGENLWE--ESHSLAKSYSEYREQELNYDRKRISTRT 737 A+ + +A+ ++ ++ L Y E E N+ + R Sbjct: 831 NSAQSALSNLNSSIEAFFEEQNITSLYDLVGMQAKKLFDVYLE---GEKNFA-YATTYRA 886 Query: 738 VTLNLKQKGFIGGIKR 753 ++ G K Sbjct: 887 FCDQIEGLGLNLRRKH 902 >gi|325860203|ref|ZP_08173328.1| hypothetical protein HMPREF9303_0578 [Prevotella denticola CRIS 18C-A] gi|325482290|gb|EGC85298.1| hypothetical protein HMPREF9303_0578 [Prevotella denticola CRIS 18C-A] Length = 396 Score = 50.7 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 66/233 (28%), Gaps = 27/233 (11%) Query: 433 DGILDLETGQKVKPTKELYITKSTGTPFVEGE-PSQEFLDLVSGYFESE-EV-MDYFTRC 489 DG + +P + ++ E L+ F + E+ MDY Sbjct: 54 DGFCTVPNHVNYQPVVDKFLNLYEPIGHQPKEGEFLHIESLIRHIFGEQYELGMDYLQLL 113 Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549 L K + + +GKST +N +K F N N Q Sbjct: 114 Y---LQPVQKLPILLMVSEERNTGKSTFLNFLKAVFQNNVTFNTNEDFRSQFN------- 163 Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609 + G ++++ E N ++ ++K ++ G E + Sbjct: 164 ----VDWAGKLLIVVDEVLLNRREDSERLKNLSTTLSYKVEAK-GKDRDEISFFAKFVLC 218 Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDKPIAN---RDASFAQKLETKYTLEAKKWF 659 N L D R + + I D F QKL + Sbjct: 219 SNNELLPVIIDVGETR-----YWVRKIERLKSDDTDFLQKL-KAEIPAFLYFL 265 >gi|301308956|ref|ZP_07214901.1| conserved hypothetical protein [Bacteroides sp. 20_3] gi|300832982|gb|EFK63607.1| conserved hypothetical protein [Bacteroides sp. 20_3] Length = 395 Score = 50.7 bits (119), Expect = 0.001, Method: Composition-based stats. Identities = 30/196 (15%), Positives = 55/196 (28%), Gaps = 28/196 (14%) Query: 467 QEFLDLVSGYFESE-EV-MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524 LV F + E+ MDY L K + + +GKST +N +K Sbjct: 90 PCIRSLVEHIFGEQYELGMDYMQLLY---LYPIQKLPILLLVSEERNTGKSTFLNFLKAI 146 Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGG 584 F + N Q G ++++ E N ++ ++K ++ Sbjct: 147 FQDNVTFNTNEDFRSQFN-----------SDWAGKLLIMVDEVLLNRREDSERLKNLSTT 195 Query: 585 DCMTARLNYGNTY-SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN---RD 640 + A F + + + + + + I D Sbjct: 196 LSYKVEAKGKDRNEIGFFAKFVLCSNNEHLPVIIDAGETRY-------WVRKIERLQCDD 248 Query: 641 ASFAQKLETKYTLEAK 656 F QKL Sbjct: 249 TDFLQKL-KDEIPAFL 263 >gi|255282238|ref|ZP_05346793.1| RecA-family ATPase [Bryantella formatexigens DSM 14469] gi|255267186|gb|EET60391.1| RecA-family ATPase [Bryantella formatexigens DSM 14469] Length = 744 Score = 50.3 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 27/203 (13%), Positives = 45/203 (22%), Gaps = 26/203 (12%) Query: 222 YNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTA 281 + S+ EW V MA+ E + WS+ S Y + KW+ F Sbjct: 18 ADLSYTEWCAVGMALKEEGFD----VSVWDGWSRNDSRYHKGECGRKWNGFR------GN 67 Query: 282 KKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNV 341 T ++ + + Y N Sbjct: 68 SAPVTAGTIVQLAKERGWVPDTG-----------HELGWDDTIRYDDAH----MVVNRNW 112 Query: 342 YIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSK 401 + L+ E +F+ E S + R N + + Sbjct: 113 LEGRDIAEPAEWDPAAQLIKYLETLFEAGENV-GYVSGSMKNEKGRHVPKDRGNYDRTAG 171 Query: 402 AKSTAQSLEAGSIFSITSDLLDS 424 A S D Sbjct: 172 QLIEALSKCHDGDIGNVIGDYDQ 194 >gi|313158708|gb|EFR58096.1| conserved hypothetical protein [Alistipes sp. HGB5] Length = 403 Score = 50.3 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 39/246 (15%), Positives = 67/246 (27%), Gaps = 30/246 (12%) Query: 423 DSSSRFLGE---QDGILDLETGQKVKPTKELYITKSTGTPFVEGE-PSQEFLDLVSGYFE 478 D +L DG + +P + ++ + LV F Sbjct: 48 DYGKDYLATVPKYDGFCTVPDHVDYRPVVDKFLNLYEPIGHRPQQGEFPCIRSLVRHIFG 107 Query: 479 SE-EV-MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEAS 536 + E+ MDY L K + + +GKST +N +K F N N Sbjct: 108 EQYELGMDYLQLLY---LQPVQKLPILLLVSEERNTGKSTFLNFLKAVFQNNVTFNTNED 164 Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNT 596 Q G ++++ E N ++ ++K ++ G Sbjct: 165 FRSQFN-----------SDWAGKLLIVVDEVLLNRREDSERLKNLSTTLSYKVEAK-GKD 212 Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN---RDASFAQKLETKYTL 653 E + N D R + + I D F QKL Sbjct: 213 RDEIAFFAKFVLCSNNEYLPVIIDAGETR-----YWVRKIDRLQSDDTDFLQKL-KAEIP 266 Query: 654 EAKKWF 659 + Sbjct: 267 AFLYYL 272 >gi|154490806|ref|ZP_02030747.1| hypothetical protein PARMER_00723 [Parabacteroides merdae ATCC 43184] gi|154088554|gb|EDN87598.1| hypothetical protein PARMER_00723 [Parabacteroides merdae ATCC 43184] Length = 407 Score = 50.3 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 38/208 (18%), Positives = 61/208 (29%), Gaps = 28/208 (13%) Query: 458 TPFVEGEPSQEFLDLVSGYFESE-EV-MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKS 515 T + +L+ F E+ MDYF L K + + +GKS Sbjct: 90 THIPQKGKFPHIQELIHHIFGEHYELGMDYFQLLY---LNPVQKLPILLLVSQERNTGKS 146 Query: 516 TLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA 575 T +N +K F + N Q G ++ + E N ++ Sbjct: 147 TFLNFLKAIFQDNVTFNTNEDFRSQFN-----------ADWAGKLLIGVDEVLLNRREDS 195 Query: 576 AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK----HLFVRNPDDAWWRRYIVIP 631 ++K ++ G E + N L W R+ Sbjct: 196 ERLKNLSTASVYKIEAK-GKDRCEVQFFGKFIMCSNNEDTPVLIEPGETRYWMRKI---- 250 Query: 632 FDKPIANRDASFAQKLETKYTLEAKKWF 659 P+ N D SF QKL T + Sbjct: 251 --NPLKNDDTSFLQKLIT-EIPAFLYFL 275 >gi|123183286|ref|XP_001280849.1| hypothetical protein [Trichomonas vaginalis G3] gi|121834082|gb|EAX67919.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 194 Score = 50.3 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 27/187 (14%), Positives = 55/187 (29%), Gaps = 15/187 (8%) Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620 + + +N+ +K + Y + + + N Sbjct: 6 CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESS 65 Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679 D RRY+V+ +D + L T + + IP Sbjct: 66 D---RRYVVVR-TSDSHMQDTEYFDALSETLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120 Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738 + ++ + + +ID+ + + SL SY +Y ++ Y S RT Sbjct: 121 -EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE---YGYMTASKRTF 172 Query: 739 TLNLKQK 745 N+K Sbjct: 173 LANVKSL 179 >gi|299141454|ref|ZP_07034591.1| conserved hypothetical protein [Prevotella oris C735] gi|298577414|gb|EFI49283.1| conserved hypothetical protein [Prevotella oris C735] Length = 415 Score = 50.3 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 29/197 (14%), Positives = 57/197 (28%), Gaps = 24/197 (12%) Query: 467 QEFLDLVSGYFESE-EV-MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524 L F + E+ MDY L K + + +GKST +N +K Sbjct: 106 PHIEALARHIFGEQYELGMDYLQLLY---LHPIEKLPILLLVSEERNTGKSTFLNFLKAL 162 Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGG 584 FG N Q G ++++ E + ++ ++K ++ Sbjct: 163 FGGNVTFNTNEDFRSQFN-----------SDWAGKLLILVDEVLLDRREDSERLKNLSTT 211 Query: 585 DCMTARLNYGN-TYSESPASFTPFIVPNKHLFVRNPDDA-WWRRYIVIPFDKPIANRDAS 642 + A F + + + + +W R + I D Sbjct: 212 LSYKVEAKGKDRDEISFFAKFVLCSNNERLPVIIDTGETRYWVRKV-----GRIEKDDTD 266 Query: 643 FAQKLETKYTLEAKKWF 659 F Q+ + + Sbjct: 267 FLQR-VKEEIPAFLYFL 282 >gi|262382812|ref|ZP_06075949.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] gi|262295690|gb|EEY83621.1| conserved hypothetical protein [Bacteroides sp. 2_1_33B] Length = 407 Score = 50.3 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 40/297 (13%), Positives = 81/297 (27%), Gaps = 32/297 (10%) Query: 372 EPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSR---F 428 N + + + + + + S+ LD Sbjct: 1 MAPTNGEVENIGEEYVRIGTTLFRIINQPMMNGSFRKMRVEWKMSVF--RLDHGKDEAAL 58 Query: 429 LGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGE-PSQEFLDLVSGYFESE-EV-MDY 485 + + DG + + + + + E L+ F + E+ MDY Sbjct: 59 IPKYDGFCTMPSHTDYRLNVNNFYNLYEPITHIPKEGEFGHIHSLIEHIFSEQYELGMDY 118 Query: 486 FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545 L K + + +GKST +N +K F N Q Sbjct: 119 LQLLY---LKPTQKLPILLLVSEERNTGKSTFLNFLKALFQENVTFNTNEDFRSQFN--- 172 Query: 546 AGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFT 605 G ++++ E N ++ ++K ++ + Y E Sbjct: 173 --------ADWAGKLMIVVDEVLLNRREDSERLKNLSTAHSYKMEAKGKDRY-EVQFFAK 223 Query: 606 PFIVPNK---HLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWF 659 + N +++ + +W R I + D SF QKL + Sbjct: 224 FVLCSNNENFPVYIEPEETRYWVRKI-----SRLVTDDTSFLQKL-KDEIPAFLYYL 274 >gi|154333715|ref|XP_001563114.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904] gi|134060124|emb|CAM37437.1| conserved hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904] Length = 580 Score = 50.3 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 12/85 (14%), Positives = 28/85 (32%), Gaps = 2/85 (2%) Query: 204 QYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGS-TYDE 262 ++ + ++D W+ V +A+H+ + E +S + Y Sbjct: 488 KWRRFKSVTAKLRTLPPRAAETYDVWVRVGLALHNFSNEDHV-FEEWVLFSLKSPLKYSR 546 Query: 263 ENFNYKWDTFDFEEIGDTAKKRSTF 287 E KW F+ ++ + Sbjct: 547 EVCRKKWVQFERNPDALNWRRGYNY 571 >gi|256838365|ref|ZP_05543875.1| conserved hypothetical protein [Parabacteroides sp. D13] gi|256739284|gb|EEU52608.1| conserved hypothetical protein [Parabacteroides sp. D13] Length = 410 Score = 50.3 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 37/246 (15%), Positives = 69/246 (28%), Gaps = 30/246 (12%) Query: 423 DSSSRFLGE---QDGILDLETGQKVKPTKELYITKSTGTPFVEGE-PSQEFLDLVSGYFE 478 D +L DG + +P + ++ + LV F Sbjct: 55 DYGKDYLATVPKYDGFCTVPDHVDYRPVVDKFLNLYEPIGHRPQQGEFPCIRSLVRHIFG 114 Query: 479 SE-EV-MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEAS 536 + E+ MDY L K + + +GKST +N +K F N Sbjct: 115 EQYELGMDYLQLLY---LQPVQKLPILLLVSEERNTGKSTFLNFLKAVF-----QNNVTF 166 Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNT 596 + ++ + G ++++ E N ++ ++K ++ G Sbjct: 167 NTNEDFRSQFNS------DWAGKLLIVVDEVLLNRREDSERLKNLSTTLSYKVEAK-GKD 219 Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN---RDASFAQKLETKYTL 653 E + N D R + + I D F QKL Sbjct: 220 RDEIAFFAKFVLCSNNEYLPVIIDAGETR-----YWVRKIDRLQSDDTDFLQKL-KAEIP 273 Query: 654 EAKKWF 659 + Sbjct: 274 AFLYYL 279 >gi|167753785|ref|ZP_02425912.1| hypothetical protein ALIPUT_02069 [Alistipes putredinis DSM 17216] gi|255007929|ref|ZP_05280055.1| hypothetical protein Bfra3_02243 [Bacteroides fragilis 3_1_12] gi|301311553|ref|ZP_07217480.1| conserved hypothetical protein [Bacteroides sp. 20_3] gi|313145641|ref|ZP_07807834.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|167658410|gb|EDS02540.1| hypothetical protein ALIPUT_02069 [Alistipes putredinis DSM 17216] gi|300830639|gb|EFK61282.1| conserved hypothetical protein [Bacteroides sp. 20_3] gi|313134408|gb|EFR51768.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 401 Score = 50.3 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 37/246 (15%), Positives = 69/246 (28%), Gaps = 30/246 (12%) Query: 423 DSSSRFLGE---QDGILDLETGQKVKPTKELYITKSTGTPFVEGE-PSQEFLDLVSGYFE 478 D +L DG + +P + ++ + LV F Sbjct: 46 DYGKDYLATVPKYDGFCTVPDHVDYRPVVDKFLNLYEPIGHRPQQGEFPCIRSLVRHIFG 105 Query: 479 SE-EV-MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEAS 536 + E+ MDY L K + + +GKST +N +K F N Sbjct: 106 EQYELGMDYLQLLY---LQPVQKLPILLLVSEERNTGKSTFLNFLKAVF-----QNNVTF 157 Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNT 596 + ++ + G ++++ E N ++ ++K ++ G Sbjct: 158 NTNEDFRSQFNS------DWAGKLLIVVDEVLLNRREDSERLKNLSTTLSYKVEAK-GKD 210 Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN---RDASFAQKLETKYTL 653 E + N D R + + I D F QKL Sbjct: 211 RDEIAFFAKFVLCSNNEYLPVIIDAGETR-----YWVRKIDRLQSDDTDFLQKL-KAEIP 264 Query: 654 EAKKWF 659 + Sbjct: 265 AFLYYL 270 >gi|156603988|ref|YP_001429934.1| hypothetical protein SPTP3102_gp39 [Staphylococcus phage tp310-2] gi|154818074|gb|ABS87501.1| hypothetical protein [Staphylococcus phage tp310-2] Length = 815 Score = 50.3 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 37/216 (17%), Positives = 69/216 (31%), Gaps = 28/216 (12%) Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549 V + G K + + G G GKS L+ + + + EA Sbjct: 515 VARVMEPGCKFDYMLTLYGPQGVGKSALLKKL-----GGAWFSDSLVSVTGKEAYEA--- 566 Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609 L G ++ ++E + IK R+ YG+ + P Sbjct: 567 ------LQGVWLMEMAELAATRKAEVEAIKHFISKQVDRFRVAYGHYIEDFPRQCIFIGT 620 Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISK 669 NK F+R+ RR+ P + +++ KL + K Y + Sbjct: 621 TNKVDFLRDETGG--RRFW--PMTVNPERVEVNWS-KLTKDEIDQIWAEA----KHYYEQ 671 Query: 670 G----LDVDIPEVCLKAKEEERQGTDTYQAWIDDCC 701 G L+ ++ E + + + + Y ID+ Sbjct: 672 GEELFLNPELEEEMRSIQNKHTEES-PYTGIIDEYL 706 >gi|239941271|ref|ZP_04693208.1| hypothetical protein SrosN15_09776 [Streptomyces roseosporus NRRL 15998] gi|239987727|ref|ZP_04708391.1| hypothetical protein SrosN1_10513 [Streptomyces roseosporus NRRL 11379] Length = 136 Score = 50.3 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 17/110 (15%), Positives = 31/110 (28%), Gaps = 8/110 (7%) Query: 32 RLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANT--FKDTFEILH 89 W E G GFV + D+D ++ + T Sbjct: 12 DPSTWSRYS---EAAASGKGAGLGFVL--NGDGVVCLDLDHCLDEHGEPAGWARTILDAA 66 Query: 90 GTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYN 139 G V + + L + ++ T G +++ G G+Y Sbjct: 67 GPTWVEVSRSGDGLHLWGYGTLPHGRRITVGGG-GSVELYGTGRYIAVTG 115 >gi|291301676|ref|YP_003512954.1| Bifunctional DNA primase/polymerase [Stackebrandtia nassauensis DSM 44728] gi|290570896|gb|ADD43861.1| Bifunctional DNA primase/polymerase [Stackebrandtia nassauensis DSM 44728] Length = 304 Score = 50.3 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 22/166 (13%), Positives = 39/166 (23%), Gaps = 10/166 (6%) Query: 76 KTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYF 135 +TF V + L + + G K +D+ G Y Sbjct: 105 DGTHTFVRLLADGVLPATVTANTGSRGLHLYYAHPGG-TVKSGGNRLGPGVDVKADGAYV 163 Query: 136 VAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSK 195 V K YTW +E +P+ + P + Sbjct: 164 VLPPSTV-NGKAYTWRPGTDPTSLELSPIG------HKLAELLAPAEPSAPVFRPAPMVS 216 Query: 196 TWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETR 241 + R A L G+ ++ + A + Sbjct: 217 ASASAFAAPSNARGRLAGLVSVVLSAPEGNRNDVLN--WAAYKAAD 260 >gi|150008750|ref|YP_001303493.1| hypothetical protein BDI_2140 [Parabacteroides distasonis ATCC 8503] gi|149937174|gb|ABR43871.1| conserved hypothetical protein [Parabacteroides distasonis ATCC 8503] Length = 413 Score = 50.3 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 33/207 (15%), Positives = 62/207 (29%), Gaps = 23/207 (11%) Query: 457 GTPFVEGE-PSQEFLDLVSGYFESE-EV-MDYFTRCVGMALLGGNKAQRFIHIRGVGGSG 513 E LV F + E+ MDY L K + + +G Sbjct: 95 PIDHRPQEGDLSHIQSLVRHIFGEQYELGMDYLQLLY---LQPIQKLPILLLVSEERNTG 151 Query: 514 KSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI 573 KST +N +K F N + ++ + G ++++ E N Sbjct: 152 KSTFLNFLKALF-----QNNVTFNTNEDFRSQFNS------DWAGKLLIVVDEVLLNRRE 200 Query: 574 NAAKIKQMTGGDCMTARLNYGN-TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF 632 ++ ++K ++ + A F + + + RY V Sbjct: 201 DSERLKNLSTTLSYKVEAKGKDRDEIAFFAKFVLCSNNEHLPVIIDAGE---TRYWVRKI 257 Query: 633 DKPIANRDASFAQKLETKYTLEAKKWF 659 D+ ++ D F QKL + Sbjct: 258 DRLRSD-DTDFLQKL-KAEIPAFLHFL 282 >gi|91783159|ref|YP_558365.1| putative DNA replication primase protein [Burkholderia xenovorans LB400] gi|91687113|gb|ABE30313.1| Putative DNA replication primase protein [Burkholderia xenovorans LB400] Length = 620 Score = 50.3 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 17/108 (15%), Positives = 33/108 (30%), Gaps = 11/108 (10%) Query: 208 REITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNY 267 E + ++ W+ + A+ +G EI WS+ + YDE Sbjct: 7 DEANRARAALAV-IPADDYETWVDMAFALKQGF--GDEGFEIWDAWSRTAANYDERAART 63 Query: 268 KWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAM 315 W + T +LF+ + L + + D + Sbjct: 64 TWRSVSESGG-------KTLATLFWRAREHGFD-LRRTHYPDRMTAVL 103 >gi|156633500|gb|ABU90823.1| E1 [Macaca fascicularis papillomavirus type 3b] Length = 627 Score = 50.3 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 28/205 (13%), Positives = 67/205 (32%), Gaps = 36/205 (17%) Query: 461 VEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNL 520 +G + + + +++ E + + L G K I + G +GKS Sbjct: 412 DDGGDWRPIVQFLR--YQNVEFITFL-SAFKAFLKGIPKKS-CIVLYGPPNTGKS----- 462 Query: 521 IKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISE--TNENDEINAAKI 578 + ++ ++ L L +++ ++ + I+ + Sbjct: 463 -------YFGMSLMQFLQGSIISYVNSNSHFWLAPLAEAKVAMLDDATPQCWSYIDT-YM 514 Query: 579 KQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR----RYIVIPFDK 634 + + G+ M+ + N P I+ + V D WR R +V F++ Sbjct: 515 RSVLDGNPMSIDRKHKNL---IQMKCPPLIITSNT-NVGEDDR--WRYLHSRVVVFKFEQ 568 Query: 635 PIA-NRDASFAQKLETKYTLEAKKW 658 +++ + +L K W Sbjct: 569 AFPFDQNGNPVYELSDK------NW 587 >gi|148267487|ref|YP_001246430.1| virulence-associated E family protein [Staphylococcus aureus subsp. aureus JH9] gi|150393540|ref|YP_001316215.1| virulence-associated E family protein [Staphylococcus aureus subsp. aureus JH1] gi|147740556|gb|ABQ48854.1| virulence-associated E family protein [Staphylococcus aureus subsp. aureus JH9] gi|149945992|gb|ABR51928.1| virulence-associated E family protein [Staphylococcus aureus subsp. aureus JH1] Length = 815 Score = 50.3 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 35/215 (16%), Positives = 66/215 (30%), Gaps = 26/215 (12%) Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549 + + G K + + G G GKS L+ + + + EA Sbjct: 515 IARVMEPGCKFDYMLTLYGPQGVGKSALLKKL-----GGAWFSDSLVSVTGKEAYEA--- 566 Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609 L G ++ ++E + IK R+ YG+ + P Sbjct: 567 ------LQGVWLMEMAELAATRKAEVEAIKHFISKQVDRFRVAYGHYIEDFPRQCIFIGT 620 Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISK 669 NK F+R+ RR+ P + +++ KL + K Y + Sbjct: 621 TNKVDFLRDETGG--RRFW--PMTVNPERVEVNWS-KLTKDEIDQIWAEA----KYYYEQ 671 Query: 670 GLDVDIPEVCLKAKEEERQ---GTDTYQAWIDDCC 701 G ++ + +A + Y ID+ Sbjct: 672 GEELFLNPELEEAMRSIQSKHTEESPYTGIIDEYL 706 >gi|88813297|ref|ZP_01128536.1| hypothetical protein NB231_07357 [Nitrococcus mobilis Nb-231] gi|88789469|gb|EAR20597.1| hypothetical protein NB231_07357 [Nitrococcus mobilis Nb-231] Length = 252 Score = 50.3 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 14/100 (14%), Positives = 34/100 (34%), Gaps = 16/100 (16%) Query: 679 CLKAKEEERQGT-------DTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRK 731 +A E+ R D +I+ C + +Y ++ E N + Sbjct: 152 VDEASEQTRLEATQLQAALDQVAQFIETQCRRSTTTRAPAEVFYDAYKDWMRSEHNA--R 209 Query: 732 RISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKL 771 + + L G+ +++ + +++ GL+L Sbjct: 210 PLGHKDFFERLDYYGY-------PQQRDARGVQLLIGLQL 242 >gi|15674737|ref|NP_268911.1| hypothetical protein SPy_0671 [Streptococcus phage 370.1] gi|94992064|ref|YP_600163.1| ATPase [Streptococcus phage 2096.1] gi|13621860|gb|AAK33632.1| hypothetical protein, phage associated [Streptococcus phage 370.1] gi|94545572|gb|ABF35619.1| RecA-family ATPase [Streptococcus phage 2096.1] Length = 757 Score = 50.3 bits (118), Expect = 0.001, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 43/129 (33%), Gaps = 14/129 (10%) Query: 225 SHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKR 284 S+ +W+ V A+ HE WS+ S Y + KWD+F +G Sbjct: 21 SYQDWVNVGFALKHE----GYTAMDWDIWSQSDSRYKKGECFAKWDSFQGNGLG--TVTG 74 Query: 285 STFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYI- 343 +T T L +G ++ + YK K W + + Sbjct: 75 ATITQLAKENGWTSDYRTSDEAHELDWDSTIDRDYK-------IIDKNWIEAKEIREPTN 127 Query: 344 WSLTLDKIT 352 WS D IT Sbjct: 128 WSPVHDLIT 136 >gi|254196284|ref|ZP_04902708.1| conserved hypothetical protein [Burkholderia pseudomallei S13] gi|169653027|gb|EDS85720.1| conserved hypothetical protein [Burkholderia pseudomallei S13] Length = 950 Score = 49.9 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 20/66 (30%), Gaps = 2/66 (3%) Query: 212 AFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDT 271 S + W MA+ E +G + WS Y+ + W + Sbjct: 5 ERASVALGYVPADDRNTWRQAGMALKAEF--GEEGFTLWNEWSLGAQNYNARDARDVWKS 62 Query: 272 FDFEEI 277 F +I Sbjct: 63 FKGGKI 68 >gi|123168638|ref|XP_001279386.1| hypothetical protein [Trichomonas vaginalis G3] gi|121828800|gb|EAX66456.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 181 Score = 49.9 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 27/177 (15%), Positives = 54/177 (30%), Gaps = 15/177 (8%) Query: 571 DEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVI 630 +N+ +K + Y + + + N D RRY+V+ Sbjct: 3 KVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESSD---RRYVVV 59 Query: 631 PFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQG 689 +D + L T + + IP + ++ + Sbjct: 60 R-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPH--TEERQTLLEA 116 Query: 690 TDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK 745 + +ID+ + + + SL SY +Y ++ Y S RT N+K Sbjct: 117 NKSVYELFIDE----TDFVSLDERSLYDSYKQYCQE---YGYMAASKRTFLANVKSL 166 >gi|312868644|ref|ZP_07728838.1| primase C-terminal domain protein [Lactobacillus oris PB013-T2-3] gi|311095853|gb|EFQ54103.1| primase C-terminal domain protein [Lactobacillus oris PB013-T2-3] Length = 750 Score = 49.9 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 29/151 (19%), Positives = 47/151 (31%), Gaps = 21/151 (13%) Query: 202 NRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQ-GSTY 260 + Q+ R + ++ + S+ EW V MA+ HE +WS++ G Y Sbjct: 2 DEQFDLRPLLDYIDP-----ASCSYAEWAQVGMALKHE----GYSVSDWDQWSQRDGDRY 52 Query: 261 DEENFNYKWDTF--------DFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYN 312 KW TF I AK + L D Sbjct: 53 HAGECERKWRTFKEAAGSVVTGATITQMAKNAGWQPASHDDEILDWDSALEVDDL-DRGY 111 Query: 313 KAMFSIYKKGHFLYTADTKAWYKKDKNNVYI 343 + + + Y KG L W D+ ++ Sbjct: 112 RLIDTDYIKGTKLQEPKN--WNPVDQIKRFV 140 >gi|149408297|ref|YP_001294576.1| hypothetical protein ORF068 [Pseudomonas phage M6] Length = 803 Score = 49.9 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 39/301 (12%), Positives = 92/301 (30%), Gaps = 28/301 (9%) Query: 457 GTPFVEGEPSQEFLDLVSGYF--ESEEVMDYFTRCVG-MALLGGNKAQRFIHIRGVGGSG 513 + GE FL+ + + E Y + M + + +RG G+G Sbjct: 442 ACDSLPGEKHMPFLNHIRDNVCSGNPEHFHYLVGWMARMVQHPDGPGEVAVVLRGRRGTG 501 Query: 514 KSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI 573 KS ++ FG Y+ +++ ++ + + L G D+ Sbjct: 502 KSFFAKVLGAMFGRHYLQVSDSKHLVGSF----NAHLRDTVLLFGDEAFFA-----GDKK 552 Query: 574 NAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVR-NPDDAWWRRYIVIPF 632 + + +K + + + + + P + N+ V D+ RR+ V+ Sbjct: 553 HESVLKTLVTEEHLVIEGKGVDAEAA-PNYVHLVLASNEDWVVPAGLDE---RRFFVMEV 608 Query: 633 DKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDT 692 + +D ++ ++++ + L + Y +V ++++ Sbjct: 609 GEG-HKQDHAYFKRIKDDLDNGGLEHLLHFLLTYDLSAFEVRQVPQTRALQDQKIMSMSP 667 Query: 693 YQAWIDDCC--------DIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQ 744 W+ + D SL Y + R +S L + Sbjct: 668 ETQWMYEKLWEGRLLKTDQDWRNKVVKDSLYDDYVNDLRDQGRNFR--MSRTGFGKWLAR 725 Query: 745 K 745 Sbjct: 726 A 726 >gi|123373018|ref|XP_001297566.1| hypothetical protein [Trichomonas vaginalis G3] gi|121877777|gb|EAX84636.1| hypothetical protein TVAG_255020 [Trichomonas vaginalis G3] Length = 194 Score = 49.9 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 28/188 (14%), Positives = 54/188 (28%), Gaps = 23/188 (12%) Query: 564 ISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAW 623 + + +N+ +K + Y + + + N D Sbjct: 9 LQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESSD-- 66 Query: 624 WRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVCLKA 682 RRY+V+ +D + L T + + IP + Sbjct: 67 -RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPY--TEE 122 Query: 683 KEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRT 737 ++ + + +ID +C D SL Y +Y ++ Y S RT Sbjct: 123 RQTLLEANKSVYELFIDETNFECLDE--------RSLYDEYKQYCQE---YGYMTASKRT 171 Query: 738 VTLNLKQK 745 N+K Sbjct: 172 FLANVKNL 179 >gi|170699160|ref|ZP_02890214.1| Primase 2 [Burkholderia ambifaria IOP40-10] gi|170135955|gb|EDT04229.1| Primase 2 [Burkholderia ambifaria IOP40-10] Length = 625 Score = 49.9 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 17/108 (15%), Positives = 35/108 (32%), Gaps = 11/108 (10%) Query: 208 REITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNY 267 E + ++ W+ + A+ +G EI WS+ + Y+E Sbjct: 7 DEADRVRAALAV-IPADDYETWVDMAFALKQGF--GDEGFEIWDAWSRTAANYNERAART 63 Query: 268 KWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAM 315 W + T +LF+ + L + + D + A+ Sbjct: 64 TWRSVSASGG-------KTLATLFWQARQHGFD-LKRTNYPDRMSAAL 103 >gi|123241630|ref|XP_001288061.1| hypothetical protein [Trichomonas vaginalis G3] gi|121856619|gb|EAX75131.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 194 Score = 49.9 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 27/187 (14%), Positives = 56/187 (29%), Gaps = 15/187 (8%) Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620 + + +N+ +K + Y + + + N Sbjct: 6 CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESS 65 Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679 D RRY+V+ +D + L T + + IP Sbjct: 66 D---RRYVVVR-TSDSHMQDTEYFDALSECLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120 Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738 + ++ + + +ID+ + + + SL SY +Y ++ Y S RT Sbjct: 121 -EERQTLLEANKSVYELFIDE----TDFVSLDERSLYDSYKQYCQE---YGYMTASKRTF 172 Query: 739 TLNLKQK 745 N+K Sbjct: 173 LANVKSL 179 >gi|242005728|ref|XP_002423714.1| Katanin p60 ATPase-containing subunit, putative [Pediculus humanus corporis] gi|212506899|gb|EEB10976.1| Katanin p60 ATPase-containing subunit, putative [Pediculus humanus corporis] Length = 526 Score = 49.9 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 72/558 (12%), Positives = 152/558 (27%), Gaps = 82/558 (14%) Query: 217 FGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQG-STYDEENFNYKWDTFDFE 275 + + MA+ S + + + T DE KW + E Sbjct: 1 MATSINEICENTKLAREMALMGNYESSGVYYQGVIQQIHRLLFTIDEPTRKSKWQSVQSE 60 Query: 276 EIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTA---DTKA 332 + + + +L + + + N A K + + D Sbjct: 61 IAEEYEQVKELVNTLQLFKIDSNIERGIRGTAFNITNSAFEEPTKDPNAWFNNTLRDPDV 120 Query: 333 WYKKDKNNVYIWSL--TLDKITASIMNF-----LVSMKEDVFDLSEEPEDNNKNSKSPRF 385 W IW+ D T S S + S + + KS R Sbjct: 121 WPPPPPRENDIWNSPTIADHRTNSHSRNSRTIDRRSEAQKKNQKSGQMTGKKIDMKSGRT 180 Query: 386 WFNTDYRRQNVEENSKA--KSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQK 443 + + ++N K K E + + S G Sbjct: 181 IRSAVKNESSDKKNDKKTEKCDKDGKEKEKDEEVVERKFEGSGY------------DGDL 228 Query: 444 VKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRF 503 V+ + + K+ + + QE L+ + G + + Sbjct: 229 VEMIERDIVQKNPNIHWDDIADLQEAKRLLEEAV-------VLPMWMPDYFKGIRRPWKG 281 Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKAN--PSLIRLMGSRI 561 + + G G+GK+ L + G + + ++ + R + R Sbjct: 282 VLMVGPPGTGKTMLAKAVATECGTTFFNVSSSTLTSKYRGESEKLVRLLFEMARFYAPST 341 Query: 562 VIISETN--------ENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKH 613 + I E + E++ + ++K + +++ ++ +E P + Sbjct: 342 IFIDEIDSLCSRRGSESEHEASRRVKS-----ELLVQMDGISSNAEEPGKIVMVLAATNF 396 Query: 614 LFVRNPDDAWWRRY---IVIPFDKP--------------IANRDASF---AQKLETKYTL 653 + D+A RR I IP + + A+KLE Sbjct: 397 P--WDIDEALRRRLEKRIYIPLPTRTGREALLKINLRDVKVDDNVDLIQVAKKLEGYSGA 454 Query: 654 EAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTD---TYQAWID--DCCDIGENLW 708 + + + + P+ + +E D T Q +I+ + C N Sbjct: 455 DITNVCRDASMMSMRRKIAGLRPDQIKQLPKE---ELDLPVTMQDFIEALEKC----NKS 507 Query: 709 EESHSLAKSYSEYREQEL 726 L Y ++ + Sbjct: 508 VSKEDL-DRYDKWMNEFG 524 >gi|66395658|ref|YP_240066.1| ORF002 [Staphylococcus phage 47] gi|253315481|ref|ZP_04838694.1| virulence-associated protein E [Staphylococcus aureus subsp. aureus str. CF-Marseille] gi|297207821|ref|ZP_06924255.1| virulence-associated protein E [Staphylococcus aureus subsp. aureus ATCC 51811] gi|62636082|gb|AAX91193.1| ORF002 [Staphylococcus phage 47] gi|296887537|gb|EFH26436.1| virulence-associated protein E [Staphylococcus aureus subsp. aureus ATCC 51811] gi|329729414|gb|EGG65819.1| Virulence-associated protein E [Staphylococcus aureus subsp. aureus 21189] Length = 815 Score = 49.9 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 35/215 (16%), Positives = 65/215 (30%), Gaps = 26/215 (12%) Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549 + + G K + + G G GKS L+ + + + EA Sbjct: 515 IARVMEPGCKFDYMLTLYGPQGVGKSALLKKL-----GGAWFSDSLVSVTGKEAYEA--- 566 Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609 L G ++ ++E + IK R+ YG+ + P Sbjct: 567 ------LQGVWLMEMAELAATRKAEVEAIKHFISKQVDRFRVAYGHYIEDFPRQCIFIGT 620 Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISK 669 NK F+R+ RR+ P + +++ KL + K Y + Sbjct: 621 TNKVDFLRDETGG--RRFW--PMTVNPERVEVNWS-KLTKDEIDQIWAEA----KHYYEQ 671 Query: 670 GLDVDIPEVCLKAKEEERQ---GTDTYQAWIDDCC 701 G D+ + + + Y ID+ Sbjct: 672 GEDLFLNPELEEEMRSIQSKHTEESPYTGIIDEYL 706 >gi|296276322|ref|ZP_06858829.1| virulence-associated protein E [Staphylococcus aureus subsp. aureus MR1] Length = 815 Score = 49.9 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 35/215 (16%), Positives = 65/215 (30%), Gaps = 26/215 (12%) Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549 + + G K + + G G GKS L+ + + + EA Sbjct: 515 IARVMEPGCKFDYMLTLYGPQGVGKSALLKKL-----GGAWFSDSLVSVTGKEAYEA--- 566 Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609 L G ++ ++E + IK R+ YG+ + P Sbjct: 567 ------LQGVWLMEMAELAATRKAEVEAIKHFISKQVDRFRVAYGHYIEDFPRQCIFIGT 620 Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISK 669 NK F+R+ RR+ P + +++ KL + K Y + Sbjct: 621 TNKVDFLRDETGG--RRFW--PMTVNPERVEVNWS-KLTKDEIDQIWAEA----KHYYEQ 671 Query: 670 GLDVDIPEVCLKAKEEERQ---GTDTYQAWIDDCC 701 G D+ + + + Y ID+ Sbjct: 672 GEDLFLNPELEEEMRSIQSKHTEESPYTGIIDEYL 706 >gi|258427145|ref|ZP_05688067.1| virulence-associated protein E [Staphylococcus aureus A9299] gi|257849923|gb|EEV73882.1| virulence-associated protein E [Staphylococcus aureus A9299] Length = 815 Score = 49.9 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 35/215 (16%), Positives = 65/215 (30%), Gaps = 26/215 (12%) Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549 + + G K + + G G GKS L+ + + + EA Sbjct: 515 IARVMEPGCKFDYMLTLYGPQGVGKSALLKKL-----GGAWFSDSLVSVTGKEAYEA--- 566 Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609 L G ++ ++E + IK R+ YG+ + P Sbjct: 567 ------LQGVWLMEMAELAATRKAEVEAIKHFISKQVDRFRVAYGHYIEDFPRQCIFIGT 620 Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISK 669 NK F+R+ RR+ P + +++ KL + K Y + Sbjct: 621 TNKVDFLRDETGG--RRFW--PMTVNPERVEVNWS-KLTKDEIDQIWAEA----KHYYEQ 671 Query: 670 GLDVDIPEVCLKAKEEERQ---GTDTYQAWIDDCC 701 G D+ + + + Y ID+ Sbjct: 672 GEDLFLNPELEEEMRSIQSKHTEESPYTGIIDEYL 706 >gi|282919232|ref|ZP_06326967.1| hypothetical protein SASG_00538 [Staphylococcus aureus subsp. aureus C427] gi|282317042|gb|EFB47416.1| hypothetical protein SASG_00538 [Staphylococcus aureus subsp. aureus C427] Length = 815 Score = 49.9 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 36/216 (16%), Positives = 69/216 (31%), Gaps = 28/216 (12%) Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549 + + G K + + G G GKS L+ + + + EA Sbjct: 515 IARVMEPGCKFDYMLTLYGPQGVGKSALLKKL-----GGAWFSDSLVSVTGKEAYEA--- 566 Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609 L G ++ ++E + IK R+ YG+ + P Sbjct: 567 ------LQGVWLMEMAELAATRKAEVEAIKHFISKQVDRFRVAYGHYIEDFPRQCIFIGT 620 Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISK 669 NK F+R+ RR+ P + +++ KL + K Y + Sbjct: 621 TNKVDFLRDETGG--RRFW--PMTVNPERVEVNWS-KLTKDEIDQIWAEA----KHYYEQ 671 Query: 670 G----LDVDIPEVCLKAKEEERQGTDTYQAWIDDCC 701 G L+ ++ E + + + + Y ID+ Sbjct: 672 GEELFLNPELEEEMRSIQSKHTEES-PYTGIIDEYL 706 >gi|284024517|ref|ZP_06378915.1| hypothetical protein Saura13_08000 [Staphylococcus aureus subsp. aureus 132] Length = 815 Score = 49.9 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 36/216 (16%), Positives = 69/216 (31%), Gaps = 28/216 (12%) Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549 + + G K + + G G GKS L+ + + + EA Sbjct: 515 IARVMEPGCKFDYMLTLYGPQGVGKSALLKKL-----GGAWFSDSLVSVTGKEAYEA--- 566 Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609 L G ++ ++E + IK R+ YG+ + P Sbjct: 567 ------LQGVWLMEMAELAATRKAEVEAIKHFISKQVDRFRVAYGHYIEDFPRQCIFIGT 620 Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISK 669 NK F+R+ RR+ P + +++ KL + K Y + Sbjct: 621 TNKVDFLRDETGG--RRFW--PMTVNPERVEVNWS-KLTKDEIDQIWAEA----KHYYEQ 671 Query: 670 G----LDVDIPEVCLKAKEEERQGTDTYQAWIDDCC 701 G L+ ++ E + + + + Y ID+ Sbjct: 672 GEELFLNPELEEEMRSIQSKHTEES-PYTGIIDEYL 706 >gi|84514752|ref|ZP_01002116.1| hypothetical protein SKA53_11039 [Loktanella vestfoldensis SKA53] gi|84511803|gb|EAQ08256.1| hypothetical protein SKA53_11039 [Loktanella vestfoldensis SKA53] Length = 619 Score = 49.9 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 41/265 (15%), Positives = 87/265 (32%), Gaps = 24/265 (9%) Query: 376 NNKNSKSPRFWFNTDYRRQNV-EENSKAKSTAQSLEAGSIFSITSDL---LDSSSRFLGE 431 + K ++ W+ + R + +E S A +++ F++ S L +S Sbjct: 124 SQKIAQKFYKWYRSKKLRAAMIDEISFAVVNGTTIDPRMCFALYSGKKYMLPGNSAKRLW 183 Query: 432 QDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVG 491 ++G DL + +E + +P DL+ + +G Sbjct: 184 RNGYCDLNVWVEPSYRQE------APVDRDDAKPLGSLQDLIDFAIATPLERQILLDWLG 237 Query: 492 MALLGGN-KAQRFIHIRGVG-GSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549 +L N K + I + G+GKSTL+ L + FG N + + R + Sbjct: 238 WSLKHENLKPRWAIFLYSETKGTGKSTLLELGQALFGEANTANENGIEGLTQRFSIDSLS 297 Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609 + + + S ++ ++ +K G+ + + + Sbjct: 298 KKFI---KVEEVKLSSHSDAGNK-----MKDYITGETAMLDVKNLSKQ-TIRLKCAFMLT 348 Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDK 634 N + RRY +I + Sbjct: 349 TNHKPTWLEGGE---RRYFLIDMNH 370 >gi|123366910|ref|XP_001296824.1| hypothetical protein [Trichomonas vaginalis G3] gi|121876636|gb|EAX83894.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 181 Score = 49.9 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 27/177 (15%), Positives = 54/177 (30%), Gaps = 15/177 (8%) Query: 571 DEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVI 630 +N+ +K + Y ++ + + N D RRY+V+ Sbjct: 3 KVLNSDALKSLITDKVGVVERKYKDSRVCENVANFIMVSNNTVPMKLESSD---RRYVVV 59 Query: 631 PFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQG 689 +D + L T + + IP + ++ + Sbjct: 60 R-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT--EERQTLLEA 116 Query: 690 TDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK 745 + +ID+ + + SL SY +Y ++ Y S RT N+K Sbjct: 117 NKSVYELFIDE----TDFECLDERSLYDSYKQYCQE---YGYMTASKRTFLANVKSL 166 >gi|66395590|ref|YP_239994.1| ORF002 [Staphylococcus phage 3A] gi|62635936|gb|AAX91047.1| ORF002 [Staphylococcus phage 3A] Length = 815 Score = 49.9 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 37/216 (17%), Positives = 70/216 (32%), Gaps = 28/216 (12%) Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549 + + G K + + G G GKS L+ I + + EA Sbjct: 515 IARVMEPGCKFDYMLTLYGPQGVGKSALLKKI-----GGAWFSDSLVSVTGKEAYEA--- 566 Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609 L G ++ ++E + IK R+ YG+ + P Sbjct: 567 ------LQGVWLMEMAELAATRKAEVEAIKHFISKQVDRFRVAYGHYIEDFPRQCIFIGT 620 Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISK 669 NK F+R+ RR+ P + +++ KL + + K Y + Sbjct: 621 TNKVDFLRDETGG--RRFW--PMTVNPERVEVNWS-KLTKEEIDQIWAEA----KYYYEQ 671 Query: 670 G----LDVDIPEVCLKAKEEERQGTDTYQAWIDDCC 701 G L+ ++ E + + + + Y ID+ Sbjct: 672 GEELFLNPELEEEMRSIQSKHTEES-PYTGIIDEYL 706 >gi|258445560|ref|ZP_05693742.1| conserved hypothetical protein [Staphylococcus aureus A6300] gi|257855607|gb|EEV78540.1| conserved hypothetical protein [Staphylococcus aureus A6300] Length = 815 Score = 49.9 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 36/216 (16%), Positives = 69/216 (31%), Gaps = 28/216 (12%) Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549 + + G K + + G G GKS L+ + + + EA Sbjct: 515 IARVMEPGCKFDYMLTLYGPQGVGKSALLKKL-----GGAWFSDSLVSVTGKEAYEA--- 566 Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609 L G ++ ++E + IK R+ YG+ + P Sbjct: 567 ------LQGVWLMEMAELAATRKAEVEAIKHFISKQVDRFRVAYGHYIEDFPRQCIFIGT 620 Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISK 669 NK F+R+ RR+ P + +++ KL + K Y + Sbjct: 621 TNKVDFLRDETGG--RRFW--PMTVNPERVEVNWS-KLTKDEIDQIWAEA----KHYYEQ 671 Query: 670 G----LDVDIPEVCLKAKEEERQGTDTYQAWIDDCC 701 G L+ ++ E + + + + Y ID+ Sbjct: 672 GEELFLNPELEEEMRSIQSKHTEES-PYTGIIDEYL 706 >gi|317969941|ref|ZP_07971331.1| hypothetical protein SCB02_10414 [Synechococcus sp. CB0205] Length = 287 Score = 49.9 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 25/200 (12%), Positives = 47/200 (23%), Gaps = 30/200 (15%) Query: 19 KLIPLRLGDKRPQRLGK---WEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDE 75 LIP R P K W G + L+A D D Sbjct: 4 ALIPCRGKAPIPMNWQKPDIWLGLSPIGCLHYHPRVTAIGLRT---SEALFALDFDGHST 60 Query: 76 KTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKE------------------GIKKKK 117 I R G + ++ +R E +K Sbjct: 61 HGYALACGIDPFALTWTISRTGNEWRLKQLWRTTPEQRAQLPYGPFSWKHVTQAALKDDN 120 Query: 118 TTESTQGH-LDILGCG-QYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFK 175 +G L++ + + HP +Y W E + + ++ Sbjct: 121 GKVLKKGEALEVFASSSRQVIVLGRHPD-GDDYYWREGKGP---EALAVAPDALWNWVLT 176 Query: 176 FFQEITVPLVKDKKSIIPSK 195 +++ ++ Sbjct: 177 MAAAAGERRPSERRQASTTR 196 >gi|304382989|ref|ZP_07365470.1| conserved hypothetical protein [Prevotella marshii DSM 16973] gi|304335908|gb|EFM02157.1| conserved hypothetical protein [Prevotella marshii DSM 16973] Length = 426 Score = 49.9 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 29/197 (14%), Positives = 57/197 (28%), Gaps = 24/197 (12%) Query: 467 QEFLDLVSGYFESE-EV-MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524 L F + E+ MDY L K + + +GKST +N +K Sbjct: 117 PHIKALARHIFGEQYELGMDYLQLLY---LHPIEKLPILLLVSEERNTGKSTFLNFLKAL 173 Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGG 584 FG N Q G ++++ E + ++ ++K ++ Sbjct: 174 FGGNVTFNTNEDFRSQFN-----------SDWAGKLLILVDEVLLDRREDSERLKNLSTT 222 Query: 585 DCMTARLNYGN-TYSESPASFTPFIVPNKHLFVRNPDDA-WWRRYIVIPFDKPIANRDAS 642 + A F + + + + +W R + I D Sbjct: 223 LSYKVEAKGKDRDEISFFAKFVLCSNNERLPVIIDTGETRYWVRKV-----GRIEKDDTD 277 Query: 643 FAQKLETKYTLEAKKWF 659 F Q+ + + Sbjct: 278 FLQR-VKEEIPAFLYFL 293 >gi|257428240|ref|ZP_05604638.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 65-1322] gi|257275081|gb|EEV06568.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus 65-1322] Length = 815 Score = 49.9 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 36/216 (16%), Positives = 69/216 (31%), Gaps = 28/216 (12%) Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549 + + G K + + G G GKS L+ + + + EA Sbjct: 515 IARVMEPGCKFDYMLTLYGPQGVGKSALLKKL-----GGAWFSDSLVSVTGKEAYEA--- 566 Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609 L G ++ ++E + IK R+ YG+ + P Sbjct: 567 ------LQGVWLMEMAELAATRKAEVEAIKHFISKQVDRFRVAYGHYIEDFPRQCIFIGT 620 Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISK 669 NK F+R+ RR+ P + +++ KL + K Y + Sbjct: 621 TNKVDFLRDETGG--RRFW--PMTVNPERVEVNWS-KLTKDEIDQIWAEA----KHYYEQ 671 Query: 670 G----LDVDIPEVCLKAKEEERQGTDTYQAWIDDCC 701 G L+ ++ E + + + + Y ID+ Sbjct: 672 GEELFLNPELEEEMRSIQSKHTEES-PYTGIIDEYL 706 >gi|134291212|ref|YP_001114981.1| putative DNA replication primase protein [Burkholderia vietnamiensis G4] gi|134134401|gb|ABO58726.1| putative DNA replication primase protein [Burkholderia vietnamiensis G4] Length = 620 Score = 49.9 bits (117), Expect = 0.002, Method: Composition-based stats. Identities = 17/94 (18%), Positives = 33/94 (35%), Gaps = 12/94 (12%) Query: 224 GSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKK 283 + W+ + A+ +G EI WS+ Y+E W + +A Sbjct: 22 DDYGTWVDMAFALKQGF--GDEGFEIWDAWSRTAPNYNERAARTTWRS-------ASASG 72 Query: 284 RSTFTSLFY---HHGKLIPKGLLASRFSDAYNKA 314 T +LF+ HG + + +R + + Sbjct: 73 GKTLATLFWQARQHGFDLKRANYPNRMTTVLAAS 106 >gi|258420307|ref|ZP_05683254.1| virulence-associated protein E [Staphylococcus aureus A9719] gi|295407569|ref|ZP_06817362.1| hypothetical protein SMAG_02738 [Staphylococcus aureus A8819] gi|297246599|ref|ZP_06930432.1| hypothetical protein SLAG_02667 [Staphylococcus aureus A8796] gi|257843732|gb|EEV68134.1| virulence-associated protein E [Staphylococcus aureus A9719] gi|294967588|gb|EFG43624.1| hypothetical protein SMAG_02738 [Staphylococcus aureus A8819] gi|297176557|gb|EFH35822.1| hypothetical protein SLAG_02667 [Staphylococcus aureus A8796] Length = 815 Score = 49.5 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 36/216 (16%), Positives = 69/216 (31%), Gaps = 28/216 (12%) Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549 + + G K + + G G GKS L+ + + + EA Sbjct: 515 IARVMEPGCKFDYMLTLYGPQGVGKSALLKKL-----GGAWFSDSLVSVTGKEAYEA--- 566 Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609 L G ++ ++E + IK R+ YG+ + P Sbjct: 567 ------LQGVWLMEMAELAATRKAEVEAIKHFISKQVDRFRVAYGHYIEDFPRQCIFIGT 620 Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISK 669 NK F+R+ RR+ P + +++ KL + K Y + Sbjct: 621 TNKVDFLRDETGG--RRFW--PMTVNPERVEVNWS-KLTKDEIDQIWAEA----KHYYEQ 671 Query: 670 G----LDVDIPEVCLKAKEEERQGTDTYQAWIDDCC 701 G L+ ++ E + + + + Y ID+ Sbjct: 672 GEELFLNPELEEEMRSIQSKHTEES-PYTGIIDEYL 706 >gi|256006214|ref|ZP_05431112.1| Bifunctional DNA primase/polymerase [Clostridium thermocellum DSM 2360] gi|255989822|gb|EEU00006.1| Bifunctional DNA primase/polymerase [Clostridium thermocellum DSM 2360] Length = 149 Score = 49.5 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 19/115 (16%), Positives = 31/115 (26%), Gaps = 26/115 (22%) Query: 8 EQAKQAIHNGFKLIPL-----------------RLGDKRPQRLGKWEEQLLSSEKIDKL- 49 + A + +IPL KRP G ++ ++I+K Sbjct: 7 DAALKYAEANIPVIPLHWICEGGLCSCKAGSNCDSRGKRPLYTGWYKNSTTDVKQINKWW 66 Query: 50 ---PACGFGFVCGVGEQPLYAFDID----SKDEKTANTFKDTFEILHGTPIVRIG 97 P G G A D+D ++ L P +G Sbjct: 67 RKSPNANIGITTGEKS-GWLALDVDMVAMKPYLHLKQHMENFLIRLLLLPAEEVG 120 >gi|258448845|ref|ZP_05696955.1| virulence-associated protein E [Staphylococcus aureus A6224] gi|257857882|gb|EEV80773.1| virulence-associated protein E [Staphylococcus aureus A6224] Length = 815 Score = 49.5 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 36/216 (16%), Positives = 69/216 (31%), Gaps = 28/216 (12%) Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549 + + G K + + G G GKS L+ + + + EA Sbjct: 515 IARVMEPGCKFDYMLTLYGPQGVGKSALLKKL-----GGAWFSDSLVSVTGKEAYEA--- 566 Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609 L G ++ ++E + IK R+ YG+ + P Sbjct: 567 ------LQGVWLMEMAELAATRKAEVEAIKHFISKQIDRFRVAYGHYIEDFPRQCIFIGT 620 Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISK 669 NK F+R+ RR+ P + +++ KL + K Y + Sbjct: 621 TNKVDFLRDETGG--RRFW--PMTVNPERVEVNWS-KLTKDEIDQIWAEA----KHYYEQ 671 Query: 670 G----LDVDIPEVCLKAKEEERQGTDTYQAWIDDCC 701 G L+ ++ E + + + + Y ID+ Sbjct: 672 GEELFLNPELEEEMRSIQSKHTEES-PYTGIIDEYL 706 >gi|260787763|ref|XP_002588921.1| hypothetical protein BRAFLDRAFT_125428 [Branchiostoma floridae] gi|229274093|gb|EEN44932.1| hypothetical protein BRAFLDRAFT_125428 [Branchiostoma floridae] Length = 405 Score = 49.5 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 46/313 (14%), Positives = 94/313 (30%), Gaps = 39/313 (12%) Query: 358 FLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSI 417 + V L EE + + +++ + + E + + Sbjct: 47 QRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKV--------HPEGKFVVDV 98 Query: 418 TSDLLDSSSRFLGEQDGILDLETGQKVKP----TKELYITKSTGTPFVEGEPSQEFLDLV 473 +D + + + L K + V + L Sbjct: 99 -DKAIDINDV---TPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLD 154 Query: 474 SGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 E +EV++ +G+A + + + G G+GK+ L + + + Sbjct: 155 KQIKEIKEVIELPVKHPELFEALGIA------QPKGVLLYGPPGTGKTLLARAVAH-HTD 207 Query: 528 QYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCM 587 I S+++Q E + L + I +E D I +++++ +GGD Sbjct: 208 CTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSE 267 Query: 588 TAR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR--RY-IVIPFDKPIANRD 640 R L E+ + + N+ + D A R R I F P + Sbjct: 268 VQRTMLELLNQLDGFEAHQNIKVVMATNRIDIL---DSALLRPGRIDRKIEFPAPNEDAR 324 Query: 641 ASFAQKLETKYTL 653 A + K L Sbjct: 325 ADILKIHSRKMNL 337 >gi|123318375|ref|XP_001292930.1| hypothetical protein [Trichomonas vaginalis G3] gi|121869085|gb|EAX80000.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 194 Score = 49.5 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 27/187 (14%), Positives = 56/187 (29%), Gaps = 15/187 (8%) Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620 + + +N+ +K + Y + + + N Sbjct: 6 CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNVVPMKLESS 65 Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679 D RRY+V+ +D + L T + + IP Sbjct: 66 D---RRYVVVR-TSDSHMQDTEYFDALSECLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120 Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738 + ++ + + +ID+ + + + SL SY +Y ++ Y S RT Sbjct: 121 -EERQTLLEANKSVYELFIDE----TDFVSLDERSLYDSYKQYCQE---YGYMAASKRTF 172 Query: 739 TLNLKQK 745 N+K Sbjct: 173 LANVKSL 179 >gi|282848866|ref|ZP_06258256.1| primase C-terminal domain protein [Veillonella parvula ATCC 17745] gi|282581371|gb|EFB86764.1| primase C-terminal domain protein [Veillonella parvula ATCC 17745] Length = 693 Score = 49.5 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 22/131 (16%), Positives = 39/131 (29%), Gaps = 19/131 (14%) Query: 219 EEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSK-QGSTYDEENFNYKWDTFDFEEI 277 + S++EW+ V +A+H E I WS G + E KW++F Sbjct: 14 IDPAQCSYEEWLNVGLALHQE----GYPMFIWEEWSADDGERFHEGECAAKWESFGRYTG 69 Query: 278 GDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKD 337 K T ++ + ++ ++ L T Y+ Sbjct: 70 -----KLVTGATITQMAKENGWTSKRKLENNE-------ALSFDSMVLA--TTPEQYQVV 115 Query: 338 KNNVYIWSLTL 348 N S Sbjct: 116 DKNWIEESDVH 126 >gi|290769632|gb|ADD61413.1| putative protein [uncultured organism] Length = 415 Score = 49.5 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 38/271 (14%), Positives = 76/271 (28%), Gaps = 32/271 (11%) Query: 395 NVEENSKAKSTAQSLEAGSIFSITSDLLDSSSR---FLGEQDGILDLETGQKVKPTKELY 451 + + + + S+ LD + + DG + + + + Sbjct: 32 RIINQPMMNGSFRKMRVEWKMSVF--RLDHGKDEAALIPKYDGFCTMPSHTDYQLNVNNF 89 Query: 452 ITKSTGTPFVEGE-PSQEFLDLVSGYFESEEV--MDYFTRCVGMALLGGNKAQRFIHIRG 508 + E L+ F + MDY L K + + Sbjct: 90 YNLYEPITHIPKEGEFNHIQSLIEHIFGEQYKLGMDYLQLLY---LKPTQKLPILLLVSE 146 Query: 509 VGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN 568 +GKST +N +K F N Q G ++++ E Sbjct: 147 ERNTGKSTFLNFLKALFQENVTFNTNEDFRSQFN-----------ADWAGKLMIVVDEVL 195 Query: 569 ENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK---HLFVRNPDDAWWR 625 N ++ ++K ++ + Y E + N +++ + +W Sbjct: 196 LNRREDSERLKNLSTAHSYKMEAKGKDRY-EVQFFAKFVLCSNNENFPVYIEPEETRYWV 254 Query: 626 RYIVIPFDKPIANRDASFAQKLETKYTLEAK 656 R I + D SF QKL+ Sbjct: 255 RKI-----SRLGKDDTSFLQKLQ-DEIPAFL 279 >gi|254975143|ref|ZP_05271615.1| virulence-associated E domain protein [Clostridium difficile QCD-66c26] gi|255314270|ref|ZP_05355853.1| virulence-associated E domain protein [Clostridium difficile QCD-76w55] gi|255516950|ref|ZP_05384626.1| virulence-associated E domain protein [Clostridium difficile QCD-97b34] gi|255650052|ref|ZP_05396954.1| virulence-associated E domain protein [Clostridium difficile QCD-37x79] gi|260686789|ref|YP_003217922.1| putative virulence-associated protein e [Clostridium difficile R20291] gi|306519587|ref|ZP_07405934.1| putative virulence-associated protein e; putative virulence-associated protein e [Clostridium difficile QCD-32g58] gi|260212805|emb|CBE03973.1| putative virulence-associated protein e [Clostridium difficile R20291] Length = 805 Score = 49.5 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 83/699 (11%), Positives = 179/699 (25%), Gaps = 123/699 (17%) Query: 23 LRLGDKRPQRLGKWEE-QLLSSEKIDKLPACGFGFVCGVGEQP-----------LYAFDI 70 + K + + E + +S + D++ G GFV G + + DI Sbjct: 43 VNRLSKTLRTQETYTEYRKMSKTEKDRVKDVG-GFVGGSLKNGRRKAENIANRSIITLDI 101 Query: 71 D--SKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFR----MNKEGIKKKKTTESTQG 124 D +KD T + + L + P+ + + E + + Sbjct: 102 DYANKDIWEDITLLNDYACLMYSTHSHTENNPRYRLVIPLTRPVLPEEYQAISRMIADTI 161 Query: 125 HLDI-----LGCGQYFVAYNIHPKTKKEYTWTTP--PHRFKVEDTPLLSEEDVEYLFKFF 177 +D+ + + + + + ++ D L + + Sbjct: 162 GIDMFDDTTYQPHRLMYFPSTSIDGDYIFKFQDGEFLNPNEILDLYLDWTDVSYWPESSR 221 Query: 178 QEITVPLVKDKKSIIPSKTWT-------NNNNRQYTNREITAFLSCFGEEFYNGS----- 225 + K+ K + N ++ E Y S Sbjct: 222 ERQKFNTQLKKQQDPIEKAGIIGAFCRSYSIKETIENFLNEVYIPGIDETRYTYSEGSTS 281 Query: 226 -----HDEWIPVVMAVHHETRGSSKGKEIAR-----RWSKQGSTYDEENFNYKWDTFDFE 275 +D+ + H S ++ + E + +F Sbjct: 282 GGVVIYDD--KFSYSHHGTDPASGILCNAFDLVRIHKFGELDEDAKPETPVNRLPSFTRM 339 Query: 276 EIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYK 335 ++ + ++ + F D D K YK Sbjct: 340 SEFASSDTKVR-KTIGRENLDKAKDDFGDIDFEDDEWLTRLDY----------DNKGSYK 388 Query: 336 KDKNNV--YIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR 393 K NN+ +I + K + F + K+ K + + D Sbjct: 389 KTTNNILMFIENDPYLKGKIAYNEF------SNRAVVLGKLPWRKDDKLNDWNDSDDSGL 442 Query: 394 QNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYIT 453 ++ E S+ + + + + ++ Sbjct: 443 RHHIETIYNISSPSKV--------------NDALIIAFENNTFHPIKDYL---------- 478 Query: 454 KSTGTPFVEGEPSQEFLDLVSGYFESEE-------VMDYFTRCVGMALLGGNKAQRFIHI 506 ++ + + L+ Y +E+ + V G K + + Sbjct: 479 -----NSLKWDGIKRVDTLLIDYLGAEDNHYTRTIIRKVLVAAVARVFNPGIKFDNMMVL 533 Query: 507 RGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISE 566 G G GKST IK G+ Y + + + +L G ++ + E Sbjct: 534 SGPQGMGKSTF---IKKLGGDWYSDSLTTV-----------QGKEAYEQLQGVWLLEMGE 579 Query: 567 TNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRR 626 + + +K R+ YG S N F+R+ RR Sbjct: 580 MMATKKADIEAVKHFLSKSEDIYRVAYGKRTSRFLRQCVVIGTTNDKEFLRDKTG--NRR 637 Query: 627 YIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKA 665 + I D + + S + ++ KA Sbjct: 638 FWPI--DTGVKKVNKSIFNGQLDNERNQIWAEAVELCKA 674 >gi|123385921|ref|XP_001299188.1| hypothetical protein [Trichomonas vaginalis G3] gi|121879974|gb|EAX86258.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 194 Score = 49.5 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 25/187 (13%), Positives = 57/187 (30%), Gaps = 15/187 (8%) Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620 + + +N+ +K + Y ++ + + N Sbjct: 6 CNELQSIDTTKVLNSDALKSLIIDKVGVVERKYKDSRVCENVANFIMVSNNAVPMKLESS 65 Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679 D RRY+V+ +D + L T + + + IP Sbjct: 66 D---RRYVVVR-TSDSHMQDTEYFDALSECLTSDFYNYLFSYFMTLDISKFNPRQIPHT- 120 Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738 + ++ + + ++D+ + + + SL Y +Y ++ Y S RT Sbjct: 121 -EERQTLLEANKSVYELFVDE----TDFVSLDERSLYDEYKQYCQE---YGYMPASKRTF 172 Query: 739 TLNLKQK 745 N+K Sbjct: 173 LANVKSL 179 >gi|19920408|ref|NP_608447.1| Pros45 [Drosophila melanogaster] gi|14286160|sp|O18413|PRS8_DROME RecName: Full=26S protease regulatory subunit 8 gi|2815905|gb|AAC63219.1| Pros45 proteosome subunit homolog [Drosophila melanogaster] gi|7295522|gb|AAF50835.1| Pros45 [Drosophila melanogaster] gi|15291775|gb|AAK93156.1| LD26005p [Drosophila melanogaster] gi|220945798|gb|ACL85442.1| Pros45-PA [synthetic construct] gi|220955554|gb|ACL90320.1| Pros45-PA [synthetic construct] Length = 405 Score = 49.5 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 47/328 (14%), Positives = 95/328 (28%), Gaps = 37/328 (11%) Query: 339 NNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKN-SKSPRFWFNTDYRRQNVE 397 + + + + + +++ L + + N + V Sbjct: 14 HKGEGFRSYYIQKIEELQLVVAEKHQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVG 73 Query: 398 ENSKAKSTAQSLEAGSIFSITSDLLDSSSRF--------LGEQDGILDLETGQKVKPTKE 449 E K + L LD + + ++ L K Sbjct: 74 EVVKPMDKKKVLVKVHPEGKFVVDLDKNIDINDVTPNCRVALRNESYTLHKILPNKVDPL 133 Query: 450 LYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRF 503 + + P E + +EV++ +G+A + Sbjct: 134 VSLMMVEKVPDSTYEMVGGLDKQIKEI---KEVIELPVKHPELFDALGIA------QPKG 184 Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVI 563 + + G G+GK+ L + + I S+++Q E + L + Sbjct: 185 VLLYGPPGTGKTLLARAVAH-HTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPS 243 Query: 564 ISETNENDEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLFVRNP 619 I +E D I +++I+ +GGD R L E+ + + N+ + Sbjct: 244 IIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL--- 300 Query: 620 DDAWWR--RY-IVIPFDKPIANRDASFA 644 D A R R I F P N +A Sbjct: 301 DPALLRPGRIDRKIEF--PPPNEEARLD 326 >gi|257432446|ref|ZP_05608809.1| virulence-associated protein E [Staphylococcus aureus subsp. aureus E1410] gi|257283325|gb|EEV13457.1| virulence-associated protein E [Staphylococcus aureus subsp. aureus E1410] Length = 815 Score = 49.5 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 36/216 (16%), Positives = 70/216 (32%), Gaps = 28/216 (12%) Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549 + + G K + + G G GKS L+ + + + EA Sbjct: 515 IARVMEPGCKFDYMLTLYGPQGVGKSALLKKL-----GGAWFSDSLVSVTGKEAYEA--- 566 Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609 L G ++ ++E + IK R+ YG+ + P Sbjct: 567 ------LQGVWLMEMAELAATRKAEVEAIKHFISKQVDRFRVAYGHYIEDFPRQCIFIGT 620 Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISK 669 NK F+R+ RR+ P + +++ KL + + K Y + Sbjct: 621 TNKVDFLRDETGG--RRFW--PMTVNPERVEVNWS-KLTKEEIDQIWAEA----KYYYEQ 671 Query: 670 G----LDVDIPEVCLKAKEEERQGTDTYQAWIDDCC 701 G L+ ++ E + + + + Y ID+ Sbjct: 672 GEELFLNPELEEEMRSIQSKHTEES-PYTGIIDEYL 706 >gi|325298294|ref|YP_004258211.1| hypothetical protein Bacsa_1151 [Bacteroides salanitronis DSM 18170] gi|330995851|ref|ZP_08319747.1| hypothetical protein HMPREF9442_00819 [Paraprevotella xylaniphila YIT 11841] gi|324317847|gb|ADY35738.1| hypothetical protein Bacsa_1151 [Bacteroides salanitronis DSM 18170] gi|329574382|gb|EGG55953.1| hypothetical protein HMPREF9442_00819 [Paraprevotella xylaniphila YIT 11841] Length = 413 Score = 49.5 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 30/210 (14%), Positives = 59/210 (28%), Gaps = 29/210 (13%) Query: 457 GTPFVEGE-PSQEFLDLVSGYFESE-EV-MDYFTRCVGMALLGGNKAQRFIHIRGVGGSG 513 E LV F + E+ MDY L K + + +G Sbjct: 95 PIDHRPQEGDLSHIQSLVRHIFGEQYELGMDYLQLLY---LQPIQKLPILLLVSEERNTG 151 Query: 514 KSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI 573 KST +N +K F N + ++ + G ++++ E N Sbjct: 152 KSTFLNFLKALF-----QNNVTFNTNEDFRSQFNS------DWAGKLLIVVDEVLLNRRE 200 Query: 574 NAAKIKQMTGGDCMTARLNYGN-TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF 632 ++ ++K ++ + A F + + + + + Sbjct: 201 DSERLKNLSTTLSYKVEAKGKDRDEIAFFAKFVLCSNNEHLPVIIDAGETRY-------W 253 Query: 633 DKPIAN---RDASFAQKLETKYTLEAKKWF 659 + I D F QKL + Sbjct: 254 VRKIDRLQSDDTDFLQKL-KAEIPAFLHFL 282 >gi|21283137|ref|NP_646225.1| hypothetical protein MW1408 [Staphylococcus aureus subsp. aureus MW2] gi|87161308|ref|YP_494107.1| virulence-associated protein E [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|161509688|ref|YP_001575347.1| hypothetical protein USA300HOU_1459 [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|262052907|ref|ZP_06025090.1| hypothetical protein SA930_0248 [Staphylococcus aureus 930918-3] gi|282905866|ref|ZP_06313721.1| virulence-associated protein E [Staphylococcus aureus subsp. aureus Btn1260] gi|282921767|ref|ZP_06329484.1| conserved hypothetical protein [Staphylococcus aureus A9765] gi|294848487|ref|ZP_06789233.1| hypothetical protein SKAG_00551 [Staphylococcus aureus A9754] gi|300911907|ref|ZP_07129350.1| virulence-associated protein E [Staphylococcus aureus subsp. aureus TCH70] gi|21204577|dbj|BAB95273.1| hypothetical protein [Staphylococcus aureus subsp. aureus MW2] gi|87127282|gb|ABD21796.1| virulence-associated protein E [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|160368497|gb|ABX29468.1| hypothetical bacteriophage protein [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|259159214|gb|EEW44275.1| hypothetical protein SA930_0248 [Staphylococcus aureus 930918-3] gi|282331158|gb|EFB60672.1| virulence-associated protein E [Staphylococcus aureus subsp. aureus Btn1260] gi|282594029|gb|EFB99018.1| conserved hypothetical protein [Staphylococcus aureus A9765] gi|294824513|gb|EFG40936.1| hypothetical protein SKAG_00551 [Staphylococcus aureus A9754] gi|300886153|gb|EFK81355.1| virulence-associated protein E [Staphylococcus aureus subsp. aureus TCH70] gi|302333127|gb|ADL23320.1| virulence-associated E family protein [Staphylococcus aureus subsp. aureus JKD6159] gi|315197727|gb|EFU28061.1| hypothetical bacteriophage protein [Staphylococcus aureus subsp. aureus CGS01] gi|320142766|gb|EFW34569.1| virulence-associated protein E [Staphylococcus aureus subsp. aureus MRSA177] Length = 815 Score = 49.5 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 36/216 (16%), Positives = 70/216 (32%), Gaps = 28/216 (12%) Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549 + + G K + + G G GKS L+ + + + EA Sbjct: 515 IARVMEPGCKFDYMLTLYGPQGVGKSALLKKL-----GGAWFSDSLVSVTGKEAYEA--- 566 Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609 L G ++ ++E + IK R+ YG+ + P Sbjct: 567 ------LQGVWLMEMAELAATRKAEVEAIKHFISKQVDRFRVAYGHYIEDFPRQCIFIGT 620 Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISK 669 NK F+R+ RR+ P + +++ KL + + K Y + Sbjct: 621 TNKVDFLRDETGG--RRFW--PMTVNPERVEVNWS-KLTKEEIDQIWAEA----KYYYEQ 671 Query: 670 G----LDVDIPEVCLKAKEEERQGTDTYQAWIDDCC 701 G L+ ++ E + + + + Y ID+ Sbjct: 672 GEELFLNPELEEEMRSIQSKHTEES-PYTGIIDEYL 706 >gi|255092533|ref|ZP_05322011.1| virulence-associated E domain protein [Clostridium difficile CIP 107932] gi|260683193|ref|YP_003214478.1| putative virulence-associated protein e [Clostridium difficile CD196] gi|260209356|emb|CBA62786.1| putative virulence-associated protein e [Clostridium difficile CD196] Length = 805 Score = 49.5 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 31/184 (16%), Positives = 54/184 (29%), Gaps = 18/184 (9%) Query: 482 VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQN 541 + V G K + + G G GKST IK G+ Y + Sbjct: 509 IRKVLVAAVARVFNPGIKFDNMMVLSGPQGMGKSTF---IKKLGGDWYSDSLTTV----- 560 Query: 542 RPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESP 601 + + +L G ++ + E + + +K R+ YG S Sbjct: 561 ------QGKEAYEQLQGVWLLEMGEMMATKKADIEAVKHFLSKSEDIYRVAYGKRTSRFL 614 Query: 602 ASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLK 661 N F+R+ RR+ I D + + S + ++ Sbjct: 615 RQCVVIGTTNDKEFLRDKTG--NRRFWPI--DTGVKKVNKSIFNGQLDNERNQIWAEAVE 670 Query: 662 GVKA 665 KA Sbjct: 671 LCKA 674 >gi|293371872|ref|ZP_06618276.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f] gi|292633118|gb|EFF51695.1| conserved hypothetical protein [Bacteroides ovatus SD CMC 3f] Length = 415 Score = 49.5 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 38/271 (14%), Positives = 76/271 (28%), Gaps = 32/271 (11%) Query: 395 NVEENSKAKSTAQSLEAGSIFSITSDLLDSSSR---FLGEQDGILDLETGQKVKPTKELY 451 + + + + S+ LD + + DG + + + + Sbjct: 32 RIINQPMMNGSFRKMRVEWKMSVF--RLDHGKDEAALIPKYDGFCTMPSHTDYQLNVNNF 89 Query: 452 ITKSTGTPFVEGE-PSQEFLDLVSGYFESEEV--MDYFTRCVGMALLGGNKAQRFIHIRG 508 + E L+ F + MDY L K + + Sbjct: 90 YNLYEPITHIPKEGEFNHIQSLIEHIFGEQYKLGMDYLQLLY---LKPTQKLPILLLVSE 146 Query: 509 VGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN 568 +GKST +N +K F N Q G ++++ E Sbjct: 147 ERNTGKSTFLNFLKALFQENVTFNTNEDFRSQFN-----------ADWAGKLMIVVDEVL 195 Query: 569 ENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK---HLFVRNPDDAWWR 625 N ++ ++K ++ + Y E + N +++ + +W Sbjct: 196 LNRREDSERLKNLSTAHSYKMEAKGKDRY-EVQFFAKFVLCSNNENFPVYIEPEETRYWV 254 Query: 626 RYIVIPFDKPIANRDASFAQKLETKYTLEAK 656 R I + D SF QKL+ Sbjct: 255 RKI-----SRLGKDDTSFLQKLQ-DEIPAFL 279 >gi|16579844|gb|AAL26659.1| unknown [Staphylococcus aureus] Length = 276 Score = 49.5 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 24/212 (11%), Positives = 79/212 (37%), Gaps = 15/212 (7%) Query: 340 NVYIWSLTLDKITASIMNFL-------VSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYR 392 N+Y + K +I+ + ++F ++ + Sbjct: 67 NIYSYFGIQKKPNDTILVEMMISIFNIKRFDSELFVFKDKGWQKVNEDELQGLISKMIQV 126 Query: 393 RQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYI 452 + + + S +++ G SI + L + + + + +L+ + V+ + +++ Sbjct: 127 L--LVDYKPSLSILKNVVVGLQNSIDVEELVENKQSIACGHNMFNLDAFEVVENSIKIFS 184 Query: 453 TKSTGTPFVEGE-----PSQEFLDLVSGYFE-SEEVMDYFTRCVGMALLGGNKAQRFIHI 506 V+ + F + + ++ + + + + L K +R + + Sbjct: 185 ATRLNLELVKSDVITEKTPPHFNRYMLEFANFDSDLQYFLFQHIAVLLTANTKYRRALLL 244 Query: 507 RGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538 G +GKS ++NL++ F ++ +++ +++ Sbjct: 245 YGGSKNGKSVVINLVRSFFYSEDIVSKALNEL 276 >gi|327198747|emb|CCA61448.1| unnamed protein product [Diadromus pulchellus ascovirus 4a] Length = 161 Score = 49.5 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 27/159 (16%), Positives = 51/159 (32%), Gaps = 15/159 (9%) Query: 626 RYIVIPFDKPIA--NRDAS---FAQKLETKYTLEAKKWFLKGVKAYI----SKGL-DVDI 675 R +++PF D F + + + L +K +I G+ D+++ Sbjct: 3 RLVIVPFRSKFVGGEADPDTYTFQRDCNISDKFKLWRSAL--LKHFISHCRKNGIADMEM 60 Query: 676 PEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIST 735 P + K E + + W+ D E + + L + Y + E + K I Sbjct: 61 PSSMVDWKNEILEENNVVAEWLWDAVRPQEGSFVQLAELRERYKKDHPHERAFKNKDI-E 119 Query: 736 RTVTLNLKQKGFIGGIK--REKIEKEWKSKRIIKGLKLK 772 R + KG + K R+ L Sbjct: 120 RMINSAFNAKGAYVKDQHYHYVDTTRKKVNRVFVNFDLN 158 >gi|320140662|gb|EFW32516.1| virulence-associated protein E [Staphylococcus aureus subsp. aureus MRSA131] Length = 815 Score = 49.5 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 36/216 (16%), Positives = 70/216 (32%), Gaps = 28/216 (12%) Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549 + + G K + + G G GKS L+ + + + EA Sbjct: 515 IARVMEPGCKFDYMLTLYGPQGVGKSALLKKL-----GGAWFSDSLVSVTGKEAYEA--- 566 Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609 L G ++ ++E + IK R+ YG+ + P Sbjct: 567 ------LQGVWLMEMAELAATRKAEVEAIKHFISKQVDRFRVAYGHYIEDFPRQCIFIGT 620 Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISK 669 NK F+R+ RR+ P + +++ KL + + K Y + Sbjct: 621 TNKVDFLRDETGG--RRFW--PMTVNPERVEVNWS-KLTKEEIDQIWAEA----KYYYEQ 671 Query: 670 G----LDVDIPEVCLKAKEEERQGTDTYQAWIDDCC 701 G L+ ++ E + + + + Y ID+ Sbjct: 672 GEELFLNPELEEEMRSIQSKHTEES-PYTGIIDEYL 706 >gi|262049887|ref|ZP_06022749.1| hypothetical protein SAD30_0343 [Staphylococcus aureus D30] gi|259162036|gb|EEW46616.1| hypothetical protein SAD30_0343 [Staphylococcus aureus D30] Length = 815 Score = 49.5 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 36/216 (16%), Positives = 70/216 (32%), Gaps = 28/216 (12%) Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549 + + G K + + G G GKS L+ + + + EA Sbjct: 515 IARVMKPGCKFDYMLTLYGPQGVGKSALLKKL-----GGAWFSDSLVSVTGKEAYEA--- 566 Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609 L G ++ ++E + IK R+ YG+ + P Sbjct: 567 ------LQGVWLMEMAELAATRKAEVEAIKHFISKQVDRFRVAYGHYIEDFPRQCIFIGT 620 Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISK 669 NK F+R+ RR+ P + +++ KL + + K Y + Sbjct: 621 TNKVDFLRDETGG--RRFW--PMTVNPERVEVNWS-KLTKEEIDQIWAEA----KYYYEQ 671 Query: 670 G----LDVDIPEVCLKAKEEERQGTDTYQAWIDDCC 701 G L+ ++ E + + + + Y ID+ Sbjct: 672 GEELFLNPELEEEMRSIQSKHTEES-PYTGIIDEYL 706 >gi|257051194|ref|YP_003129027.1| hypothetical protein Huta_0105 [Halorhabdus utahensis DSM 12940] gi|256689957|gb|ACV10294.1| hypothetical protein Huta_0105 [Halorhabdus utahensis DSM 12940] Length = 382 Score = 49.5 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 35/235 (14%), Positives = 58/235 (24%), Gaps = 29/235 (12%) Query: 22 PLRLGDKRPQRLGKWE-EQLLSSEKID---------KLPACGFGFVCGVGEQP---LYAF 68 PL K P ++ + + E + + + GF G E L Sbjct: 2 PLTDDSKNPAIRDRFGLDNPRAKELLRPPDEAVEAIRSGSRGFVLYAGRPEHGTEELVFT 61 Query: 69 DIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDI 128 D D N T +VR G +R N + G +I Sbjct: 62 DHDDVGLWPPNETPRTL-------LVRSGSGTGYHQTYR-NSGSVDNAHGKGELAGAGEI 113 Query: 129 LGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVED---TPLLSEEDVEYLFKFFQEITVPLV 185 Y VA + Y P + + P L + + Sbjct: 114 RAKNWYVVAPGSIHPSGGIYHQVQNPGIGTIREEHIPPELRPSNGASKGSSHGDPKPLEP 173 Query: 186 KDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYN-----GSHDEWIPVVMA 235 D + + N + +S + + GS+ MA Sbjct: 174 DDIEDLGKDFDPDAVTNEWGATVQEARIVSKKLDHLLSTYNPGGSYPSTSEADMA 228 >gi|15617554|ref|NP_258354.1| DNA helicase [Spodoptera litura NPV] gi|15553290|gb|AAL01768.1|AF325155_80 DNA helicase [Spodoptera litura NPV] Length = 1235 Score = 49.5 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 26/155 (16%), Positives = 49/155 (31%), Gaps = 12/155 (7%) Query: 486 FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545 + + + I++ G GKS+ +L+ S + + Sbjct: 927 MMHFTASLAIPSDYEKMCIYLNGESNCGKSSFFDLLDTII--VAHKRDSMSYNTSKKETD 984 Query: 546 AGKANPSLIRLMGSRIVIISETNENDEINAAKIK-QMTGGDCMTARLNYGNTYSESPASF 604 +AN + +L NE E N A K + Y + + A++ Sbjct: 985 EMEANKLISQLY--------VINEMKECNDAFFKNSADSSKSNSVCRKYEGSQ-KYEANY 1035 Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR 639 IV NK L +++ D R+ V+ Sbjct: 1036 KLLIVNNKPLCIQDYDKGVRNRFCVVYMKHVFVEN 1070 >gi|329730638|gb|EGG67023.1| Virulence-associated protein E [Staphylococcus aureus subsp. aureus 21193] Length = 815 Score = 49.5 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 36/216 (16%), Positives = 70/216 (32%), Gaps = 28/216 (12%) Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549 + + G K + + G G GKS L+ + + + EA Sbjct: 515 IARVMEPGCKFDYMLTLYGPQGVGKSALLKKL-----GGAWFSDSLVSVTGKEAYEA--- 566 Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609 L G ++ ++E + IK R+ YG+ + P Sbjct: 567 ------LQGVWLMEMAELAATRKAEVEAIKHFISKQVDRFRVAYGHYIEDFPRQCIFIGT 620 Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISK 669 NK F+R+ RR+ P + +++ KL + + K Y + Sbjct: 621 TNKVDFLRDETGG--RRFW--PMTVNPERVEVNWS-KLTKEEIDQIWAEA----KYYYEQ 671 Query: 670 G----LDVDIPEVCLKAKEEERQGTDTYQAWIDDCC 701 G L+ ++ E + + + + Y ID+ Sbjct: 672 GEELFLNPELEEEMRSIQSKHTEES-PYTGIIDEYL 706 >gi|2245467|gb|AAC48284.1| DUG [Drosophila melanogaster] Length = 405 Score = 49.5 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 47/328 (14%), Positives = 96/328 (29%), Gaps = 37/328 (11%) Query: 339 NNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKN-SKSPRFWFNTDYRRQNVE 397 + + + + + +++ L + + N + V Sbjct: 14 HKGEGFRSYYIQKIEELQLVVAEKHQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVG 73 Query: 398 ENSKAKSTAQSLEAGSIFSITSDLLDSSSRF--------LGEQDGILDLETGQKVKPTKE 449 E K + L + LD + + ++ L K Sbjct: 74 EVVKPMDKKKVLVKVHPEGKSVVDLDKNIDINDVTPNCRVALRNESYTLHKILPNKVDPL 133 Query: 450 LYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRF 503 + + P E + +EV++ +G+A + Sbjct: 134 VSLMMVEKVPDSTYEMVGGLDKQIKEI---KEVIELPVKHPELFDALGIA------QPKG 184 Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVI 563 + + G G+GK+ L + + I S+++Q E + L + Sbjct: 185 VLLYGPPGTGKTLLARAVAH-HTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPS 243 Query: 564 ISETNENDEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLFVRNP 619 I +E D I +++I+ +GGD R L E+ + + N+ + Sbjct: 244 IIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL--- 300 Query: 620 DDAWWR--RY-IVIPFDKPIANRDASFA 644 D A R R I F P N +A Sbjct: 301 DPALLRPGRIDRKIEF--PPPNEEARLD 326 >gi|282911095|ref|ZP_06318897.1| virulence-associated protein E [Staphylococcus aureus subsp. aureus WBG10049] gi|282324790|gb|EFB55100.1| virulence-associated protein E [Staphylococcus aureus subsp. aureus WBG10049] gi|312438075|gb|ADQ77146.1| virulence-associated protein E [Staphylococcus aureus subsp. aureus TCH60] Length = 815 Score = 49.5 bits (116), Expect = 0.002, Method: Composition-based stats. Identities = 36/216 (16%), Positives = 70/216 (32%), Gaps = 28/216 (12%) Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549 + + G K + + G G GKS L+ + + + EA Sbjct: 515 IARVMEPGCKFDYMLTLYGPQGVGKSALLKKL-----GGAWFSDSLVSVTGKEAYEA--- 566 Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609 L G ++ ++E + IK R+ YG+ + P Sbjct: 567 ------LQGVWLMEMAELAATRKAEVEAIKHFISKQVDRFRVAYGHYIEDFPRQCIFIGT 620 Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISK 669 NK F+R+ RR+ P + +++ KL + + K Y + Sbjct: 621 TNKVDFLRDETGG--RRFW--PMTVNPERVEVNWS-KLTKEEIDQIWAEA----KYYYEQ 671 Query: 670 G----LDVDIPEVCLKAKEEERQGTDTYQAWIDDCC 701 G L+ ++ E + + + + Y ID+ Sbjct: 672 GEELFLNPELEEEMRSIQSKHTEES-PYTGIIDEYL 706 >gi|123189625|ref|XP_001282100.1| hypothetical protein [Trichomonas vaginalis G3] gi|121838464|gb|EAX69170.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 181 Score = 49.5 bits (116), Expect = 0.003, Method: Composition-based stats. Identities = 29/181 (16%), Positives = 53/181 (29%), Gaps = 23/181 (12%) Query: 571 DEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVI 630 +N+ +K + Y + + + N D RRY+V+ Sbjct: 3 KVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESSD---RRYVVV 59 Query: 631 PFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQG 689 +D + L T + + IP + ++ + Sbjct: 60 R-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT--EERQTLLEA 116 Query: 690 TDTYQA-WID----DCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQ 744 + +ID +C D SL SY +Y ++ Y S RT N+K Sbjct: 117 NKSVYELFIDETNFECLDE--------RSLYDSYKQYCQE---YGYMAASKRTFLANVKS 165 Query: 745 K 745 Sbjct: 166 L 166 >gi|325299325|ref|YP_004259242.1| hypothetical protein Bacsa_2216 [Bacteroides salanitronis DSM 18170] gi|324318878|gb|ADY36769.1| hypothetical protein Bacsa_2216 [Bacteroides salanitronis DSM 18170] Length = 396 Score = 49.1 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 42/304 (13%), Positives = 89/304 (29%), Gaps = 49/304 (16%) Query: 357 NFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFS 416 + + ++ + +P + K W N + K+ ++ F Sbjct: 4 EEYMRVGTTLYKVVNQPCASGGYEKRRVIWNN------STLRQDYGKNYLATVPKYDGFC 57 Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY 476 D L+ G + + ++ T ++ LV Sbjct: 58 TVPDHLNYRKEIDGFLN------LYEPIEHTPQIG-------------DFPNIRSLVLHI 98 Query: 477 FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGS-GKSTLMNLIKYAFGNQYVINAEA 535 F E + + + L + + + + GKST +N +K FG+ N Sbjct: 99 FG--EQYNLGLDYLQLLFLQPLQKLPILLLVSEERNTGKSTFLNFLKAVFGDNVTFNTNE 156 Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595 Q G ++++ E N ++ ++K ++ G Sbjct: 157 DFRSQFN-----------SDWAGKLLIVVDEVLLNRREDSERLKNLSTTFNYKVEAK-GK 204 Query: 596 TYSESPASFTPFIVPNK--HLFVRNPDDA-WWRRYIVIPFDKPIANRDASFAQKLETKYT 652 +E + N + + + +W R I P+ N D +F QKL + Sbjct: 205 DRTEIAFFAKFVLCSNNEYLPVIIDAGETRYWVRKI-----NPLQNDDTNFLQKL-KEEI 258 Query: 653 LEAK 656 Sbjct: 259 PAFL 262 >gi|329960381|ref|ZP_08298806.1| hypothetical protein HMPREF9446_00365 [Bacteroides fluxus YIT 12057] gi|328532819|gb|EGF59601.1| hypothetical protein HMPREF9446_00365 [Bacteroides fluxus YIT 12057] Length = 396 Score = 49.1 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 42/304 (13%), Positives = 89/304 (29%), Gaps = 49/304 (16%) Query: 357 NFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFS 416 + + ++ + +P + K W N + K+ ++ F Sbjct: 4 EEYMRVGTTLYKVVNQPCASGGYEKRRVIWNN------STLRQDYGKNYLATVPKYDGFC 57 Query: 417 ITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY 476 D L+ G + + ++ T ++ LV Sbjct: 58 TVPDHLNYRKEIDGFLN------LYEPIEHTPQIG-------------DFPNIRSLVLHI 98 Query: 477 FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGS-GKSTLMNLIKYAFGNQYVINAEA 535 F E + + + L + + + + GKST +N +K FG+ N Sbjct: 99 FG--EQYNLGLDYLQLLFLQPLQKLPILLLVSEERNTGKSTFLNFLKAVFGDNVTFNTNE 156 Query: 536 SDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN 595 Q G ++++ E N ++ ++K ++ G Sbjct: 157 DFRSQFN-----------SDWAGKLLIVVDEVLLNRREDSERLKNLSTTFNYKVEAK-GK 204 Query: 596 TYSESPASFTPFIVPNK--HLFVRNPDDA-WWRRYIVIPFDKPIANRDASFAQKLETKYT 652 +E + N + + + +W R I P+ N D +F QKL + Sbjct: 205 DRTEIAFFAKFVLCSNNEYLPVIIDAGETRYWVRKI-----NPLQNDDTNFLQKL-KEEI 258 Query: 653 LEAK 656 Sbjct: 259 PAFL 262 >gi|123182477|ref|XP_001280687.1| hypothetical protein [Trichomonas vaginalis G3] gi|121833435|gb|EAX67757.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 194 Score = 49.1 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 27/187 (14%), Positives = 56/187 (29%), Gaps = 15/187 (8%) Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620 + + +N+ +K + Y ++ + + N Sbjct: 6 CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDSRVCENVANFIMVSNNVVPMKLESS 65 Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679 D RRY+V+ +D + L T + + IP Sbjct: 66 D---RRYVVVR-TSDSHMQDTEYFDALSECLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120 Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738 + ++ + + +ID+ + + SL SY +Y ++ Y S RT Sbjct: 121 -EERQTLLEANKSVYELFIDE----TDFECLDERSLYDSYKQYCQE---YGYMAASKRTF 172 Query: 739 TLNLKQK 745 N+K Sbjct: 173 LANVKSL 179 >gi|282927340|ref|ZP_06334958.1| conserved hypothetical protein [Staphylococcus aureus A10102] gi|282590664|gb|EFB95740.1| conserved hypothetical protein [Staphylococcus aureus A10102] Length = 815 Score = 49.1 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 36/216 (16%), Positives = 70/216 (32%), Gaps = 28/216 (12%) Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549 + + G K + + G G GKS L+ + + + EA Sbjct: 515 IARVMEPGCKFDYMLTLYGPQGVGKSALLKKL-----GGAWFSDSLVSVTGKEAYEA--- 566 Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609 L G ++ ++E + IK R+ YG+ + P Sbjct: 567 ------LQGVWLMEMAELAATRKAEVEAIKHFISKQVDRFRVAYGHYIEDFPRQCVFIGT 620 Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISK 669 NK F+R+ RR+ P + +++ KL + + K Y + Sbjct: 621 TNKVDFLRDETGG--RRFW--PMTVNPERVEVNWS-KLTKEEIDQIWAEA----KYYYEQ 671 Query: 670 G----LDVDIPEVCLKAKEEERQGTDTYQAWIDDCC 701 G L+ ++ E + + + + Y ID+ Sbjct: 672 GEELFLNPELEEEMRSIQSKHTEES-PYTGIIDEYL 706 >gi|123237242|ref|XP_001287127.1| hypothetical protein [Trichomonas vaginalis G3] gi|121853963|gb|EAX74197.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 181 Score = 49.1 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 27/177 (15%), Positives = 53/177 (29%), Gaps = 15/177 (8%) Query: 571 DEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVI 630 +N+ +K + Y + + + N D RRY+V+ Sbjct: 3 KVLNSDALKSLITDKVGVVERKYKDQRVCENVANFVMVSNNAVPMKLESSD---RRYVVV 59 Query: 631 PFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQG 689 +D + L T + + IP + ++ + Sbjct: 60 R-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT--EERQTLLEA 116 Query: 690 TDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK 745 + +ID+ + + SL SY +Y ++ Y S RT N+K Sbjct: 117 NKSVYELFIDE----TDFECLDERSLYDSYKQYCQE---YGYMTASKRTFLANVKSL 166 >gi|123301825|ref|XP_001291078.1| hypothetical protein [Trichomonas vaginalis G3] gi|121864608|gb|EAX78148.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 194 Score = 49.1 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 26/187 (13%), Positives = 55/187 (29%), Gaps = 15/187 (8%) Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620 + + +N+ +K + Y + + + N Sbjct: 6 CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESS 65 Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679 D RRY+V+ +D + L T + + IP Sbjct: 66 D---RRYVVVR-TSDSHMQDTEYFDALSECLTSDFYNHLFSYFMTLDISKFNPRQIPHT- 120 Query: 680 LKAKEEERQGTDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTV 738 + ++ + + +ID+ + + + SL Y +Y ++ Y S RT Sbjct: 121 -EERQTLLEANKSVYELFIDE----TDFVSLDEKSLYDEYKQYCQE---YGYMAASKRTF 172 Query: 739 TLNLKQK 745 N+K Sbjct: 173 LANVKSL 179 >gi|290891514|ref|ZP_06554572.1| hypothetical protein AWRIB429_1962 [Oenococcus oeni AWRIB429] gi|290478863|gb|EFD87529.1| hypothetical protein AWRIB429_1962 [Oenococcus oeni AWRIB429] Length = 265 Score = 49.1 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 39/287 (13%), Positives = 83/287 (28%), Gaps = 36/287 (12%) Query: 7 KEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEK-----IDKLPACGFGFVCGVG 61 +E A++ G ++P+ +K P K+ +Q +E ++ P Sbjct: 8 EEYAQRYAKAGMYVLPV--ANKHPII--KFADQPALTESQIHDIWEQHPNADIAVRT--- 60 Query: 62 EQPLYAFDID-SKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120 + DID +D + K+ + + + F M +GI+ ++ Sbjct: 61 -VDFFVVDIDKHQDNNGFKSLKEFNHNEYFSTTLTQKTAHGGAQMFYMKPKGIEVEQNIG 119 Query: 121 STQGHLDILGC-GQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQE 179 +G +D+ Y V S+E + + + Sbjct: 120 WLKG-VDVKAHINNYVVIAPS-----------DGYQFVNHHKIVEASKELLRAIKPVNSQ 167 Query: 180 ITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHE 239 +P K I K+ T + I L G N + + + Sbjct: 168 YDIPESVRNKYHITEKSKTAELFER-----IAFGLGGSGMRNNNLTE----LIGGLLFRG 218 Query: 240 TRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRST 286 + + +E FN + + +E+ +T Sbjct: 219 VDPDAVLQLCRLTNQNSPQPLEESEFNKTYTSMLKKEMRRRNDTGTT 265 >gi|288925203|ref|ZP_06419138.1| conserved hypothetical protein [Prevotella buccae D17] gi|288337968|gb|EFC76319.1| conserved hypothetical protein [Prevotella buccae D17] Length = 415 Score = 49.1 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 29/197 (14%), Positives = 57/197 (28%), Gaps = 24/197 (12%) Query: 467 QEFLDLVSGYFESE-EV-MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524 L F + E+ MDY L K + + +GKST +N +K Sbjct: 106 PHIEALARHIFGEQYELGMDYLQLLY---LQPIEKLPILLLVSEERNTGKSTFLNFLKAL 162 Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGG 584 FG N Q G ++++ E + ++ ++K ++ Sbjct: 163 FGGNVTFNTNEDFRSQFN-----------SDWAGKLLILVDEVLLDRREDSERLKNLSTT 211 Query: 585 DCMTARLNYGN-TYSESPASFTPFIVPNKHLFVRNPDDA-WWRRYIVIPFDKPIANRDAS 642 + A F + + + + +W R + I D Sbjct: 212 LSYKVEAKGKDRDEISFFAKFVLCSNNERLPVIIDTGETRYWVRKV-----GRIEKDDTD 266 Query: 643 FAQKLETKYTLEAKKWF 659 F Q+ + + Sbjct: 267 FLQR-VKEEIPTFLYFL 282 >gi|255306560|ref|ZP_05350731.1| virulence-associated E domain protein [Clostridium difficile ATCC 43255] Length = 805 Score = 49.1 bits (115), Expect = 0.003, Method: Composition-based stats. Identities = 31/184 (16%), Positives = 54/184 (29%), Gaps = 18/184 (9%) Query: 482 VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQN 541 + V G K + + G G GKST IK G+ Y + Sbjct: 509 IRKVLVAAVARIFNPGIKFDNMMVLSGPQGMGKSTF---IKKLGGDWYSDSLTTV----- 560 Query: 542 RPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESP 601 + + +L G ++ + E + + +K R+ YG S Sbjct: 561 ------QGKEAYEQLQGVWLLEMGEMMATKKADIEAVKHFLSKSEDIYRVAYGKRTSRFL 614 Query: 602 ASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLK 661 N F+R+ RR+ I D + + S + ++ Sbjct: 615 RQCVVIGTTNDKEFLRDKTG--NRRFWPI--DTGVKKINKSIFNGQLDNERNQIWAEAVE 670 Query: 662 GVKA 665 KA Sbjct: 671 LYKA 674 >gi|291225648|ref|XP_002732818.1| PREDICTED: Pros45-like [Saccoglossus kowalevskii] Length = 376 Score = 48.7 bits (114), Expect = 0.003, Method: Composition-based stats. Identities = 47/303 (15%), Positives = 94/303 (31%), Gaps = 39/303 (12%) Query: 358 FLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSI 417 + V L EE + + +++ + + E + I Sbjct: 52 QRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKV--------HPEGKFVVDI 103 Query: 418 TS--DLLDSSSR-FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVS 474 D+ D + + ++ L K + + P E + Sbjct: 104 DKNIDMGDVTPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIK 163 Query: 475 GYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 +EV++ +G+A + + + G G+GK+ L + + + Sbjct: 164 EI---KEVIELPVKHPELFEALGIA------QPKGVLLYGPPGTGKTLLARAVAH-HTDC 213 Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588 I S+++Q E + L + I +E D I +++++ +GGD Sbjct: 214 TFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEV 273 Query: 589 AR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR--RY-IVIPFDKPIANRDA 641 R L ES + + N+ + D A R R I F P N +A Sbjct: 274 QRTMLELLNQLDGFESHKNIKVIMATNRIDIL---DSALLRPGRIDRKIEF--PPPNEEA 328 Query: 642 SFA 644 Sbjct: 329 RLD 331 >gi|215401469|ref|YP_002332773.1| helicase [Spodoptera litura nucleopolyhedrovirus II] gi|209484010|gb|ACI47443.1| helicase [Spodoptera litura nucleopolyhedrovirus II] Length = 1217 Score = 48.7 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 44/343 (12%), Positives = 96/343 (27%), Gaps = 38/343 (11%) Query: 314 AMFSIYKKGHFLYTADT-KAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEE 372 ++ Y +Y ++ S + + FL +KE + D Sbjct: 725 SLVREYADFFTCNRTKIINVFYDYLDKINFVDSFISTLSSPEM--FLSKLKETISDKKHH 782 Query: 373 PEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQ 432 +++++ RF N+ +E++ + + ++ L + Sbjct: 783 YDEDDEIGNIERFLNNSH-----LEDDDDDHEMTAADDEEPFMQNFYYNYYTTLSMLKKW 837 Query: 433 DGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLD----LVSGY---------FES 479 + + + + + T T D V F + Sbjct: 838 N--VWWDKLIVRRHN-DDLNTWLTRFYMRIFMTKLNLDDYSSLFVKQIVMGYLYFRQFTN 894 Query: 480 EEVMD-YFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537 ++ T G + + + +++ G GSGKS+ + + A + Sbjct: 895 FNYVNSLVTMHFGAGTGIPTDYEKCCLYLNGKPGSGKSSFFAVFDHFIVVHKHDTANYTL 954 Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMT-GGDCMTARLNYGNT 596 ++ I + NE + + K T Y + Sbjct: 955 TKKDTNEMEAD----------KMISQLYVINEMKVCDDSFFKSTADSTKSNTVCRKYEGS 1004 Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR 639 + +F IV NK L + + D R+ VI D Sbjct: 1005 Q-KYEGNFKLLIVNNKPLHISDYDKGVRNRFAVIYTDHLFEEN 1046 >gi|330719218|ref|ZP_08313818.1| prophage DNA replication protein [Leuconostoc fallax KCTC 3537] Length = 272 Score = 48.7 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 25/177 (14%), Positives = 50/177 (28%), Gaps = 23/177 (12%) Query: 8 EQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKL-------PACGFGFVCGV 60 E KQ G + K G + ++ G Sbjct: 5 EHIKQYQQAGAYVFMALPNQKHNGIAGGFHNSFNKWVELKDWIKRHSDYQNGNVGIDL-- 62 Query: 61 GEQPLYAFDIDSKDEKTANTFKDTFEILHGTP------IVRIGQKPKILIPFRMNKEGIK 114 + L DID + + F+ H P ++ + + + IK Sbjct: 63 SKSNLVVVDIDKHEHNGMASILAWFKTHHIEPDTIQDTYIKRTPTGGLHAFYLIPNGQIK 122 Query: 115 KKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVE 171 K + +G +D+L VA ++ + +Y T + K + + + Sbjct: 123 PKHVINAIKG-VDVLSETGVTVAPSMIDE--GQYRQITAFDKIKP-----VPQWVYD 171 >gi|297591003|ref|ZP_06949641.1| virulence-associated protein E [Staphylococcus aureus subsp. aureus MN8] gi|297575889|gb|EFH94605.1| virulence-associated protein E [Staphylococcus aureus subsp. aureus MN8] Length = 815 Score = 48.7 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 36/216 (16%), Positives = 69/216 (31%), Gaps = 28/216 (12%) Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549 + + G K + + G G GKS L+ + + + EA Sbjct: 515 IARVMEPGCKFDYMLTLYGPQGVGKSALLKKL-----GGAWFSDSLVSVTGKEAYEA--- 566 Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609 L G ++ ++E + IK R+ YG+ + P Sbjct: 567 ------LQGVWLMEMAELAATRKAEVEAIKHFISKQVDRFRVAYGHYIEDFPRQCIFIGT 620 Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISK 669 NK F+R+ RR+ P + +++ KL + K Y + Sbjct: 621 TNKVDFLRDETGG--RRFW--PMTVNPERVEVNWS-KLTKDEIDQIWAEA----KYYYEQ 671 Query: 670 G----LDVDIPEVCLKAKEEERQGTDTYQAWIDDCC 701 G L+ ++ E + + + + Y ID+ Sbjct: 672 GEELFLNPELEEEMRSIQSKHTEES-PYTGIIDEYL 706 >gi|209363581|ref|YP_002267999.1| virulence-associated protein E [Staphylococcus phage phi2958PVL] gi|208973082|dbj|BAG74398.1| virulence-associated protein E [Staphylococcus phage phi2958PVL] Length = 815 Score = 48.7 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 36/216 (16%), Positives = 69/216 (31%), Gaps = 28/216 (12%) Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549 + + G K + + G G GKS L+ + + + EA Sbjct: 515 IARVMEPGCKFDYMLTLYGPQGVGKSALLKKL-----GGAWFSDSLVSVTGKEAYEA--- 566 Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609 L G ++ ++E + IK R+ YG+ + P Sbjct: 567 ------LQGVWLMEMAELAATRKAEVEAIKHFISKQVDRFRVAYGHYIEDFPRQCIFIGT 620 Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISK 669 NK F+R+ RR+ P + +++ KL + K Y + Sbjct: 621 TNKVDFLRDETGG--RRFW--PMTVNPERVEVNWS-KLTKDEIDQIWAEA----KYYYEQ 671 Query: 670 G----LDVDIPEVCLKAKEEERQGTDTYQAWIDDCC 701 G L+ ++ E + + + + Y ID+ Sbjct: 672 GEELFLNPELEEEMRSIQSKHTEES-PYTGIIDEYL 706 >gi|300924604|ref|ZP_07140566.1| ATPase, AAA family [Escherichia coli MS 182-1] gi|300419235|gb|EFK02546.1| ATPase, AAA family [Escherichia coli MS 182-1] Length = 373 Score = 48.7 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 34/259 (13%), Positives = 85/259 (32%), Gaps = 39/259 (15%) Query: 468 EFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 + D + + +D + +G+ + R G G GK+ + + G Sbjct: 104 QIEDSLDQIILERKHIDRL-KALGL------QPTRSAIFVGPPGVGKTLTASWLAQKLGV 156 Query: 528 QYVINAEASDIMQNRPPEAGKANPSLIRLM-GSRIVIISETN-----ENDEINAAKIKQM 581 + + + + +L G ++++ E + +D+ + ++K++ Sbjct: 157 PFYVLDLTAVMSSYLGKSGNNLRAALDFAKKGPCVLLLDEIDSIAKKRSDDSDVGELKRL 216 Query: 582 TGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY-IVIPFDKPIANRD 640 E P+S N + D A WRR+ +V+ F+KP + Sbjct: 217 VT--------VILQEVDEWPSSSLLLAATNFAELI---DPALWRRFDLVLNFEKPDSESI 265 Query: 641 ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQ------GTD--T 692 ++ +W + ++ ++ + R+ +D Sbjct: 266 KEAIKRFSGPDYAIFARWIDLLAIMFKNESFSN-----IERSINKFRRSVALGISSDEEL 320 Query: 693 YQAWIDDCC-DIGENLWEE 710 ++I D ++ N +E Sbjct: 321 IGSFIKDGLSELDRNERKE 339 >gi|268608984|ref|ZP_06142711.1| Primase 2 [Ruminococcus flavefaciens FD-1] Length = 743 Score = 48.7 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 23/183 (12%), Positives = 55/183 (30%), Gaps = 25/183 (13%) Query: 205 YTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQ-GSTYDEE 263 Y N + L + +W + MA+ S + WS + + Y + Sbjct: 3 YKNDNLEELLEYIDPS--ELDYQQWCGIGMALK----DSGYDGSVWDTWSMRDAARYHQG 56 Query: 264 NFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGH 323 KW +F + + T ++ + G + A + + + Sbjct: 57 ECEKKWRSF------NGSDTPVTAGTIVKMA---LDGGYHPPSKAPDKVLAWDDVIGEEY 107 Query: 324 FLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSM--KEDVFDLSEEPEDNNKNSK 381 + +A+ D + I + + I +L ++ D+ E + + Sbjct: 108 TVTSAE-------DTQELPIHEPKIWDPASEIRRYLEALFDMNDIVGYVTEVWKDEADGG 160 Query: 382 SPR 384 + Sbjct: 161 KFK 163 >gi|237711319|ref|ZP_04541800.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] gi|229454014|gb|EEO59735.1| conserved hypothetical protein [Bacteroides sp. 9_1_42FAA] Length = 396 Score = 48.7 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 35/209 (16%), Positives = 56/209 (26%), Gaps = 27/209 (12%) Query: 457 GTPFVEGE-PSQEFLDLVSGYFESE-EV-MDYFTRCVGMALLGGNKAQRFIHIRGVGGSG 513 E LV F + E+ MDY L K + + +G Sbjct: 78 PIDHRPQEGDLSHIQSLVRHIFGKQYELGMDYLQLLY---LQPIQKLPILLLVSEERNTG 134 Query: 514 KSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI 573 KST +N +K F N N Q G ++++ E N Sbjct: 135 KSTFLNFLKALFQNNVTFNTNEDFRSQFN-----------SDWAGKLLIVVDEVLLNRRE 183 Query: 574 NAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFD 633 ++ ++K ++ G E + N D R + Sbjct: 184 DSERLKNLSTTLSYKVEAK-GKDRDEIAFFAKFVLCSNNEYLPVIIDAGETR-----YWV 237 Query: 634 KPIAN---RDASFAQKLETKYTLEAKKWF 659 + I D F QKL + Sbjct: 238 RKIDRLQSDDTDFLQKL-KAEIPAFLHFL 265 >gi|237716127|ref|ZP_04546608.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262407739|ref|ZP_06084287.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] gi|229443774|gb|EEO49565.1| conserved hypothetical protein [Bacteroides sp. D1] gi|262354547|gb|EEZ03639.1| conserved hypothetical protein [Bacteroides sp. 2_1_22] Length = 744 Score = 48.7 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 27/198 (13%), Positives = 56/198 (28%), Gaps = 21/198 (10%) Query: 438 LETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLV---SGYFESEEVMDYFTRCVGMAL 494 +++ ++ S T + + + V F + + V A+ Sbjct: 414 VDSDYAKPFNPFIHYFTSLQTWDGKTDHIGQLTKTVKAADQAFFEDSFRRWLVGMVACAI 473 Query: 495 LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLI 554 + + + + G G GKST + + R N Sbjct: 474 DDEAQNHQLMLLHGAQGKGKSTFVRHL-----------LPPELKDYYRNGMISPDNKD-- 520 Query: 555 RLMGSRIVIISETNENDEINAAK---IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPN 611 L+ ++ +E D ++ A+ +K + D M R Y + N Sbjct: 521 HLLQMSSCLLINLDEFDTLSPARMQELKSLITQDVMNERKVYDIQNYTFIRRASFIASTN 580 Query: 612 KHLFVRNPDDAWWRRYIV 629 + D RR + Sbjct: 581 NPHCLP--DIGENRRILF 596 >gi|7288076|emb|CAB81811.1| hypothetical protein [Sulfolobus islandicus] Length = 193 Score = 48.7 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 16/128 (12%), Positives = 39/128 (30%), Gaps = 17/128 (13%) Query: 654 EAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGE-------- 705 + + ++G VD + + D+ +I + G Sbjct: 1 GIITTAIASISRAFAQG-HVDFEQSEEEVMGIWLSHIDSVYNFIKTYVEKGTIRLDPKNG 59 Query: 706 NLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRI 765 +LW L Y Y ++ + + ++ + L++ +K + R Sbjct: 60 DLWVPKDQLYNLYQNYCIEQG---FRGVGRKSFSRKLRE-----YFGITVSQKGAERDRA 111 Query: 766 IKGLKLKP 773 G+ + P Sbjct: 112 FVGIAVDP 119 >gi|123975725|ref|XP_001330380.1| hypothetical protein [Trichomonas vaginalis G3] gi|121896530|gb|EAY01679.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 213 Score = 48.7 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 28/216 (12%), Positives = 60/216 (27%), Gaps = 18/216 (8%) Query: 489 CVGMAL-LGGNKAQRFIHIRGVGGSGKSTLM-NLIKYAF-GNQYVINAEASDIMQNRPPE 545 L K + + I G G+GK+T +++ G +I Sbjct: 7 WFANILQHPSAKNETALIIIGKQGTGKNTFFTDILCKLLEGYSNPNMTNLENICGKF--- 63 Query: 546 AGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFT 605 N S+ + + + +N+ +K + Y + + Sbjct: 64 ----NSSIENMKLIVCNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANF 119 Query: 606 PFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKA 665 + N D RRY+V+ +D + L T + Sbjct: 120 IMVSNNVVPMKLESSD---RRYVVVR-TSDSHMQDTEYFDDLAETLTSDFYNHLFSYFMT 175 Query: 666 YISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDD 699 + IP + ++ + + +ID+ Sbjct: 176 LDISKFNPRQIPHT--EERQTLLEANKSVYELFIDE 209 >gi|315128425|gb|EFT84433.1| virulence-associated E family protein [Staphylococcus aureus subsp. aureus CGS03] Length = 815 Score = 48.7 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 36/216 (16%), Positives = 69/216 (31%), Gaps = 28/216 (12%) Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549 + + G K + + G G GKS L+ + + + EA Sbjct: 515 IARVMEPGCKFDYMLTLYGPQGVGKSALLKKL-----GGAWFSDSLVSVTGKEAYEA--- 566 Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609 L G ++ ++E + IK R+ YG+ + P Sbjct: 567 ------LQGVWLMEMAELAATRKAEVEAIKHFISKQVDRFRVAYGHYIEDFPRQCIFIGT 620 Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISK 669 NK F+R+ RR+ P + +++ KL + K Y + Sbjct: 621 TNKVDFLRDETGG--RRFW--PMTVNPERVEVNWS-KLTKDEIDQIWAEA----KYYYEQ 671 Query: 670 G----LDVDIPEVCLKAKEEERQGTDTYQAWIDDCC 701 G L+ ++ E + + + + Y ID+ Sbjct: 672 GEELFLNPELEEEMRSIQSKHTEES-PYTGIIDEYL 706 >gi|258455570|ref|ZP_05703527.1| virulence-associated protein E [Staphylococcus aureus A5937] gi|257862258|gb|EEV85029.1| virulence-associated protein E [Staphylococcus aureus A5937] Length = 815 Score = 48.7 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 36/216 (16%), Positives = 69/216 (31%), Gaps = 28/216 (12%) Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549 + + G K + + G G GKS L+ + + + EA Sbjct: 515 IARVMEPGCKFDYMLTLYGPQGVGKSALLKKL-----GGAWFSDSLVSVTGKEAYEA--- 566 Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609 L G ++ ++E + IK R+ YG+ + P Sbjct: 567 ------LQGVWLMEMAELAATRKAEVEAIKHFISKQVDRFRVAYGHYIEDFPRQCIFIGT 620 Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISK 669 NK F+R+ RR+ P + +++ KL + K Y + Sbjct: 621 TNKVDFLRDETGG--RRFW--PMTVNPERVEVNWS-KLTKDEIDQIWAEA----KYYYEQ 671 Query: 670 G----LDVDIPEVCLKAKEEERQGTDTYQAWIDDCC 701 G L+ ++ E + + + + Y ID+ Sbjct: 672 GEELFLNPELEEEMRSIQSKHTEES-PYTGIIDEYL 706 >gi|298480878|ref|ZP_06999073.1| VirE N- domain protein [Bacteroides sp. D22] gi|298272901|gb|EFI14467.1| VirE N- domain protein [Bacteroides sp. D22] Length = 744 Score = 48.7 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 27/198 (13%), Positives = 56/198 (28%), Gaps = 21/198 (10%) Query: 438 LETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLV---SGYFESEEVMDYFTRCVGMAL 494 +++ ++ S T + + + V F + + V A+ Sbjct: 414 VDSDYAKPFNPFIHYFTSLQTWDGKTDHIGQLTKTVKAADQAFFEDSFRRWLVGMVACAI 473 Query: 495 LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLI 554 + + + + G G GKST + + R N Sbjct: 474 DDEAQNHQLMLLHGAQGKGKSTFVRHL-----------LPPELKDYYRNGMISPDNKD-- 520 Query: 555 RLMGSRIVIISETNENDEINAAK---IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPN 611 L+ ++ +E D ++ A+ +K + D M R Y + N Sbjct: 521 HLLQMSSCLLINLDEFDTLSPARMQELKSLITQDVMNERKVYDIQNYTFIRRASFIASTN 580 Query: 612 KHLFVRNPDDAWWRRYIV 629 + D RR + Sbjct: 581 NPHCLP--DIGENRRILF 596 >gi|328793580|ref|XP_001120516.2| PREDICTED: hypothetical protein LOC724622 [Apis mellifera] Length = 1149 Score = 48.7 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 12/83 (14%), Positives = 29/83 (34%), Gaps = 5/83 (6%) Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754 WI + ++ + Y+ Y + K +ST +KQ ++ Sbjct: 119 MWIKTHLEEDPDVSLPKQEVYDEYNMYCMRNSM---KPLSTADFGKVMKQ--VYPRVRPR 173 Query: 755 KIEKEWKSKRIIKGLKLKPAFES 777 ++ S+ G++ + +S Sbjct: 174 RLGTRGNSRYCYAGMRKRVKLDS 196 >gi|123194369|ref|XP_001283045.1| hypothetical protein [Trichomonas vaginalis G3] gi|121841646|gb|EAX70115.1| hypothetical protein TVAG_557960 [Trichomonas vaginalis G3] Length = 194 Score = 48.7 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 28/191 (14%), Positives = 54/191 (28%), Gaps = 23/191 (12%) Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620 + + +N+ +K + Y + + + N Sbjct: 6 CNELQSIDTTKVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNVVPMKLESS 65 Query: 621 DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVC 679 D RRY+V+ +D + L T + + IP Sbjct: 66 D---RRYVVVR-TSDSHMQDTEYFDALSETLTSDFYNHLFSYFMTLDISKFNPRQIPYT- 120 Query: 680 LKAKEEERQGTDTYQA-WID----DCCDIGENLWEESHSLAKSYSEYREQELNYDRKRIS 734 + ++ + + +ID +C D SL Y +Y ++ Y S Sbjct: 121 -EERQTLLEANKSVYELFIDETNFECLDE--------RSLYDEYKQYCQE---YGYMTAS 168 Query: 735 TRTVTLNLKQK 745 RT N+K Sbjct: 169 KRTFLANVKNL 179 >gi|270009668|gb|EFA06116.1| hypothetical protein TcasGA2_TC008959 [Tribolium castaneum] Length = 1009 Score = 48.7 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 31/91 (34%), Gaps = 9/91 (9%) Query: 687 RQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746 R + +WI + L + + Y+ Y Q K +S +KQ Sbjct: 106 RSEINRTISWIKTHLEEDAALSLPKQEVYEEYTVYCTQN---QIKSLSQADFGKVMKQ-- 160 Query: 747 FIGGIKREKIEKEWKSKRIIKGLK----LKP 773 ++ ++ S+ GL+ LKP Sbjct: 161 VYPKVRARRLGTRGNSRYCYSGLRRCIKLKP 191 >gi|189239377|ref|XP_001812755.1| PREDICTED: similar to rfx5 [Tribolium castaneum] Length = 1015 Score = 48.7 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 17/91 (18%), Positives = 31/91 (34%), Gaps = 9/91 (9%) Query: 687 RQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746 R + +WI + L + + Y+ Y Q K +S +KQ Sbjct: 105 RSEINRTISWIKTHLEEDAALSLPKQEVYEEYTVYCTQN---QIKSLSQADFGKVMKQ-- 159 Query: 747 FIGGIKREKIEKEWKSKRIIKGLK----LKP 773 ++ ++ S+ GL+ LKP Sbjct: 160 VYPKVRARRLGTRGNSRYCYSGLRRCIKLKP 190 >gi|49485832|ref|YP_043053.1| hypothetical protein SAS0926 [Staphylococcus aureus subsp. aureus MSSA476] gi|49244275|emb|CAG42702.1| hypothetical phage protein [Staphylococcus aureus subsp. aureus MSSA476] Length = 815 Score = 48.7 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 36/216 (16%), Positives = 69/216 (31%), Gaps = 28/216 (12%) Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549 + + G K + + G G GKS L+ + + + EA Sbjct: 515 IARVMEPGCKFDYMLTLYGPQGVGKSALLKKL-----GGAWFSDSLVSVTGKEAYEA--- 566 Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609 L G ++ ++E + IK R+ YG+ + P Sbjct: 567 ------LQGVWLMEMAELAATRKAEVEAIKHFISKQVDRFRVAYGHYIEDFPRQCIFIGT 620 Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISK 669 NK F+R+ RR+ P + +++ KL + K Y + Sbjct: 621 TNKVDFLRDETGG--RRFW--PMTVNPERVEVNWS-KLTKDEIDQIWAEA----KYYYEQ 671 Query: 670 G----LDVDIPEVCLKAKEEERQGTDTYQAWIDDCC 701 G L+ ++ E + + + + Y ID+ Sbjct: 672 GEELFLNPELEEEMRSIQSKHTEES-PYTGIIDEYL 706 >gi|313150074|ref|ZP_07812267.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] gi|313138842|gb|EFR56201.1| conserved hypothetical protein [Bacteroides fragilis 3_1_12] Length = 396 Score = 48.7 bits (114), Expect = 0.004, Method: Composition-based stats. Identities = 38/246 (15%), Positives = 69/246 (28%), Gaps = 30/246 (12%) Query: 423 DSSSRFLGE---QDGILDLETGQKVKPTKELYITKSTGTPFVEGE-PSQEFLDLVSGYFE 478 D +L DG + + +P ++ E LV F Sbjct: 41 DYGRDYLATVPKYDGFCTVPEHARYQPVIGKFLNLYEPIDHRPEEGDFTHIQSLVRHIFG 100 Query: 479 SE-EV-MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEAS 536 + E+ MDY L K + + +GKST +N +K F N Sbjct: 101 EQYELGMDYLQLLY---LHPVQKLPILLLVSEERNTGKSTFLNFLKALF-----QNNVTF 152 Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNT 596 + ++ + G ++++ E N ++ ++K ++ G Sbjct: 153 NTNEDFRSQFNS------DWAGKLLILVDEVLLNRREDSERLKNLSTTLSYKMEAK-GKD 205 Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN---RDASFAQKLETKYTL 653 E + N D R + + I D F QKL Sbjct: 206 RDEIAFFAKFVLCSNNEYLPVIIDAGETR-----YWVRKIDRLQSDDTDFLQKL-KAEIP 259 Query: 654 EAKKWF 659 + Sbjct: 260 AFLHFL 265 >gi|49483702|ref|YP_040926.1| hypothetical protein SAR1525 [Staphylococcus aureus subsp. aureus MRSA252] gi|295428026|ref|ZP_06820658.1| hypothetical protein SIAG_00553 [Staphylococcus aureus subsp. aureus EMRSA16] gi|49241831|emb|CAG40523.1| hypothetical phage protein [Staphylococcus aureus subsp. aureus MRSA252] gi|295128384|gb|EFG58018.1| hypothetical protein SIAG_00553 [Staphylococcus aureus subsp. aureus EMRSA16] Length = 815 Score = 48.3 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 36/216 (16%), Positives = 69/216 (31%), Gaps = 28/216 (12%) Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549 + + G K + + G G GKS L+ + + + EA Sbjct: 515 IARVMEPGCKFDYMLTLYGPQGVGKSALLKKL-----GGAWFSDSLVSVTGKEAYEA--- 566 Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609 L G ++ ++E + IK R+ YG+ + P Sbjct: 567 ------LQGVWLMEMAELAATRKAEVEAIKHFISKQVDRFRVAYGHYIEDFPRQCIFIGT 620 Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISK 669 NK F+R+ RR+ P + +++ KL + K Y + Sbjct: 621 TNKVDFLRDETGG--RRFW--PMTVNPERVEVNWS-KLTKDEIDQIWAEA----KYYYEQ 671 Query: 670 G----LDVDIPEVCLKAKEEERQGTDTYQAWIDDCC 701 G L+ ++ E + + + + Y ID+ Sbjct: 672 GEELFLNPELEEEMRSIQSKHTEES-PYTGIIDEYL 706 >gi|33589242|dbj|BAC81741.1| DNA helicase [Antheraea pernyi nucleopolyhedrovirus] Length = 1212 Score = 48.3 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 24/152 (15%), Positives = 54/152 (35%), Gaps = 11/152 (7%) Query: 486 FTRCVGMALLGGNKA-QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544 +L ++ +++ GV SGKST L+ +++ D + Sbjct: 884 MLMHFAASLSAPTDYGRKAVYLPGVPLSGKSTFFELL------YFLVLMHKFDDETHTGE 937 Query: 545 EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604 ++ + +L + NE + + + K+ + + A++ Sbjct: 938 SRETSDKEVSKLN----SQLYTINELKKCSESFFKKHADSSKCDTKSRKYQGLLKYEANY 993 Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI 636 IV N L+V + DD R++++ D Sbjct: 994 KMLIVNNNPLYVDDYDDGVQNRFLIVYTDHKF 1025 >gi|269955633|ref|YP_003325422.1| Bifunctional DNA primase/polymerase [Xylanimonas cellulosilytica DSM 15894] gi|269304314|gb|ACZ29864.1| Bifunctional DNA primase/polymerase [Xylanimonas cellulosilytica DSM 15894] Length = 305 Score = 48.3 bits (113), Expect = 0.004, Method: Composition-based stats. Identities = 24/203 (11%), Positives = 44/203 (21%), Gaps = 31/203 (15%) Query: 19 KLIPLRLGDKRPQRLGKWEEQLLSSEKIDKL----PACGFGFVCGVGEQ----------- 63 + P +G KRP + + E++ P G G Sbjct: 37 PVFPCVVGGKRPLTEHGFLDATTDPERVASWWRTTPRANIGMPTGEMSGLDVVDVDVHDG 96 Query: 64 --PLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTES 121 A D F +VR + + ++++ S Sbjct: 97 RTGFPAI-----QAARRAGLVDGF-----AWMVRTP-SGGLHAYY--PHLAGTEQRSWSS 143 Query: 122 TQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEIT 181 H+D G G Y V + + + + E + Sbjct: 144 PTAHVDFRGDGGYVVVPPSAVQRDGG-SVAYALSAVAQDRPRPIDAEALHVFVDPGYGAV 202 Query: 182 VPLVKDKKSIIPSKTWTNNNNRQ 204 P +T Sbjct: 203 RRAPAVGIPAPPRRTDPTAIANW 225 >gi|15320740|ref|NP_203252.1| helicase [Epiphyas postvittana NPV] gi|15213208|gb|AAK85647.1| helicase [Epiphyas postvittana NPV] Length = 1219 Score = 48.3 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 29/157 (18%), Positives = 51/157 (32%), Gaps = 19/157 (12%) Query: 485 YFTRCVGMALLGGNKA-QRFIHIRGVGGSGKSTLMNLIKYAF----GNQYVINAEASDIM 539 + +L+ ++ +++ G SGKST L+ + EA + Sbjct: 891 FMLMHFAASLVAPTDYGRKAVYLPGEPMSGKSTFFELLDQLVLMHKFDDETHTGEAKETS 950 Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599 + ++ L + + NA IK T L Y Y Sbjct: 951 DKEVSKLNSQLYTINELKKC-------SESFFKKNADSIKSNTSSRKYQGLLRYEANY-- 1001 Query: 600 SPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI 636 IV NK L+V + DD R++++ D Sbjct: 1002 -----KMLIVNNKPLYVDDYDDGVQERFLIVNTDHKF 1033 >gi|307353570|ref|YP_003894621.1| hypothetical protein Mpet_1423 [Methanoplanus petrolearius DSM 11571] gi|307156803|gb|ADN36183.1| hypothetical protein Mpet_1423 [Methanoplanus petrolearius DSM 11571] Length = 256 Score = 48.3 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 33/183 (18%), Positives = 50/183 (27%), Gaps = 20/183 (10%) Query: 61 GEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKP-KILIPFRMNKEGIKKK--K 117 + D D+ E D F T VR G + + F+ + KK Sbjct: 2 PAGGVCILDADNATELVQLHALDIFSD---TFFVRTGGEGFRGHFYFKCDFPDHKKIILY 58 Query: 118 TTESTQGHLDILGCGQ--YFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFK 175 E+ + DI G Y + + K YT + EE +E LF Sbjct: 59 HPETGKELGDIRPSGCKAYCLGPGSIHPSGKPYTIGNDRPVREFTY-----EEIMEKLFS 113 Query: 176 FFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMA 235 + N N E+ ++ F + D I Sbjct: 114 -------KVGTSADKKEKQPAGDLNKNENNLVEELGLTVTEFLMPLNHTIRDSQIEGEHP 166 Query: 236 VHH 238 VH Sbjct: 167 VHG 169 >gi|223933203|ref|ZP_03625194.1| Bifunctional DNA primase/polymerase [Streptococcus suis 89/1591] gi|223898133|gb|EEF64503.1| Bifunctional DNA primase/polymerase [Streptococcus suis 89/1591] Length = 268 Score = 48.3 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 26/226 (11%), Positives = 59/226 (26%), Gaps = 16/226 (7%) Query: 8 EQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKL----PACGFGFVCGVGEQ 63 E A GF +IP+ KR + ++++ S +I +L P Sbjct: 6 EYALHYARLGFSVIPIDKRSKR--AITAYKDKTFSELEIKRLWRDNPDANIAVKT---TD 60 Query: 64 PLYAFDIDSKDEKTANTFKDT-FEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTEST 122 D ++F++ + + I + K + Sbjct: 61 FFVIDIDVRDDVDGYSSFEEWELKQYIPATLQATTPSGGRHIFLKKPKG--VQISQDIKV 118 Query: 123 QGHLDILGC-GQYFVAYNIHPKTKKEYTWTTPPHRF--KVEDTPLLSEEDVEYLFKFFQE 179 + +DI Y + + K Y W + + + + F Sbjct: 119 RPGIDIKAHPNNYVLVAPSNNPRGK-YVWDQSVEEMAEAPIELLDILQAGKKPSKINFTT 177 Query: 180 ITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGS 225 P K + + + + N + + + + Sbjct: 178 KYNPEYSSKTAKLFEQIVFGLGDEGGRNNNLASLIGGLLIRGVDEE 223 >gi|217979219|ref|YP_002363366.1| virulence-associated E family protein [Methylocella silvestris BL2] gi|217504595|gb|ACK52004.1| virulence-associated E family protein [Methylocella silvestris BL2] Length = 413 Score = 48.3 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 39/223 (17%), Positives = 67/223 (30%), Gaps = 31/223 (13%) Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542 + V G KA + + G G+ KST G + ++ Sbjct: 159 RLFLIAMVARIFQAGCKADYMVVLEGPQGARKST----ACAILGGPWFSDSLPDVTSGKD 214 Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602 + L G ++ I+E + +A +K R +G P Sbjct: 215 VDQ---------HLRGKWLIEIAEMSAMSRAESAALKAFISRQTERYRPAFGRKEVVEPR 265 Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIV-----IPFDKPIANRDASFAQKLETKYTLEAKK 657 NK ++R+ RR+ I + +RD FA+ + Y AK Sbjct: 266 QCLFIGSTNKAAYLRDETGG--RRFWPVKVGAIDTEALAHDRDQLFAEAVHL-YRAGAKW 322 Query: 658 WFLKGVKAYISKGLDVDIP-EVCLKAKEEERQGTDTYQAWIDD 699 W + L P + + + T AW+ D Sbjct: 323 W-----PDAQFE-LRHIKPQQEARFETDAWEE---TIAAWLRD 356 >gi|255012234|ref|ZP_05284360.1| hypothetical protein Bfra3_24042 [Bacteroides fragilis 3_1_12] Length = 413 Score = 48.3 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 38/246 (15%), Positives = 69/246 (28%), Gaps = 30/246 (12%) Query: 423 DSSSRFLGE---QDGILDLETGQKVKPTKELYITKSTGTPFVEGE-PSQEFLDLVSGYFE 478 D +L DG + + +P ++ E LV F Sbjct: 58 DYGRDYLATVPKYDGFCTVPEHARYQPVIGKFLNLYEPIDHRPEEGDFTHIQSLVRHIFG 117 Query: 479 SE-EV-MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEAS 536 + E+ MDY L K + + +GKST +N +K F N Sbjct: 118 EQYELGMDYLQLLY---LHPVQKLPILLLVSEERNTGKSTFLNFLKALF-----QNNVTF 169 Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNT 596 + ++ + G ++++ E N ++ ++K ++ G Sbjct: 170 NTNEDFRSQFNS------DWAGKLLILVDEVLLNRREDSERLKNLSTTLSYKMEAK-GKD 222 Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN---RDASFAQKLETKYTL 653 E + N D R + + I D F QKL Sbjct: 223 RDEIAFFAKFVLCSNNEYLPVIIDAGETR-----YWVRKIDRLQSDDTDFLQKL-KAEIP 276 Query: 654 EAKKWF 659 + Sbjct: 277 AFLHFL 282 >gi|260816690|ref|XP_002603221.1| hypothetical protein BRAFLDRAFT_226535 [Branchiostoma floridae] gi|229288538|gb|EEN59232.1| hypothetical protein BRAFLDRAFT_226535 [Branchiostoma floridae] Length = 197 Score = 48.3 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 13/83 (15%), Positives = 26/83 (31%), Gaps = 5/83 (6%) Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754 WI ++ + + Y Y + N + +S + K +K Sbjct: 47 HWIRSHLEVHPDTSLPKQDVFDEYKTYCD---NMKYRNLSPADFGKMM--KMAFPNLKAR 101 Query: 755 KIEKEWKSKRIIKGLKLKPAFES 777 ++ SK GL+ K + Sbjct: 102 RLGTRGNSKYCYGGLRKKSELQP 124 >gi|328726383|ref|XP_003248876.1| PREDICTED: hypothetical protein LOC100572784 [Acyrthosiphon pisum] Length = 283 Score = 48.3 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 24/96 (25%), Positives = 39/96 (40%), Gaps = 2/96 (2%) Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 K N ++ SET+ N IN+ +K +T + ++ R ++ N + T Sbjct: 5 NKRNARSAQIENKLASFSSETSSNCIINSQTLKLLTEPNIIS-RKSFSNDTGQ-KNYLTQ 62 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDAS 642 FIV N + N D A + R V+ F D Sbjct: 63 FIVTNFKVEFDNDDPAAYHRLAVVEFKSHFTQPDNE 98 >gi|317473777|ref|ZP_07933058.1| hypothetical protein HMPREF1016_00036 [Bacteroides eggerthii 1_2_48FAA] gi|316910034|gb|EFV31707.1| hypothetical protein HMPREF1016_00036 [Bacteroides eggerthii 1_2_48FAA] Length = 358 Score = 48.3 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 34/236 (14%), Positives = 71/236 (30%), Gaps = 25/236 (10%) Query: 429 LGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGE-PSQEFLDLVSGYFESE-EV-MDY 485 + + DG + +P ++ E LV F + E+ MDY Sbjct: 67 IPKYDGFCTVPEHIGYRPVIGKFLNLYEPIDHQPQEGDFPSIRSLVEHSFGEQYELGMDY 126 Query: 486 FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545 L K + + +GKST +N +K F N + ++ + Sbjct: 127 LQLLY---LQPVQKLPILLLVSEERNTGKSTFLNFLKALF-----QNNVTFNTNEDFRSQ 178 Query: 546 AGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN-TYSESPASF 604 G ++++ E N ++ ++K ++ + A F Sbjct: 179 FNS------DWAGKLLIVVDEVLLNRREDSERLKNLSTTLSYKVEAKGKDRDEIAFFAKF 232 Query: 605 TPFIVPNKHLFVRNPDDA-WWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWF 659 + + + +W R I + + D +F Q+L + Sbjct: 233 VLCSNNEYLPVIIDAGETRYWVRKI-----NRLQSDDTNFLQRL-KAEIPAFLHFL 282 >gi|295084566|emb|CBK66089.1| Predicted P-loop ATPase and inactivated derivatives [Bacteroides xylanisolvens XB1A] Length = 707 Score = 48.3 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 27/198 (13%), Positives = 56/198 (28%), Gaps = 21/198 (10%) Query: 438 LETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLV---SGYFESEEVMDYFTRCVGMAL 494 +++ ++ S T + + + V F + + V A+ Sbjct: 377 VDSDYAKPFNPFIHYFTSLQTWDGKTDHIGQLTKTVKAADQAFFEDSFRRWLVGMVACAI 436 Query: 495 LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLI 554 + + + + G G GKST + + R N Sbjct: 437 DDEAQNHQLMLLHGAQGKGKSTFVRHL-----------LPPELKDYYRNGMISPDNKD-- 483 Query: 555 RLMGSRIVIISETNENDEINAAK---IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPN 611 L+ ++ +E D ++ A+ +K + D M R Y + N Sbjct: 484 HLLQMSSCLLINLDEFDTLSPARMQELKSLITQDVMNERKVYDIQNYTFIRRASFIASTN 543 Query: 612 KHLFVRNPDDAWWRRYIV 629 + D RR + Sbjct: 544 NPHCLP--DIGENRRILF 559 >gi|332030480|gb|EGI70168.1| 26S protease regulatory subunit 8 [Acromyrmex echinatior] Length = 427 Score = 48.3 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 47/303 (15%), Positives = 93/303 (30%), Gaps = 39/303 (12%) Query: 358 FLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSI 417 + V L EE + + +++ + + E + I Sbjct: 69 QRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKV--------HPEGKFVVDI 120 Query: 418 TS--DLLDSSSR-FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVS 474 D+ D + + ++ L K + + P E + Sbjct: 121 DKNIDINDVTPNSRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIK 180 Query: 475 GYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 +EV++ +G+A + + + G G+GK+ L + + Sbjct: 181 EI---KEVIELPVKHPELFDALGIA------QPKGVLLYGPPGTGKTLLARAVAH-HTEC 230 Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588 I S+++Q E + L + I +E D I +++I+ +GGD Sbjct: 231 TFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEV 290 Query: 589 AR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR--RY-IVIPFDKPIANRDA 641 R L E+ + + N+ + D A R R I F P N +A Sbjct: 291 QRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DPALLRPGRIDRKIEF--PPPNEEA 345 Query: 642 SFA 644 Sbjct: 346 RLD 348 >gi|307175717|gb|EFN65582.1| 26S protease regulatory subunit 8 [Camponotus floridanus] Length = 694 Score = 48.3 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 47/303 (15%), Positives = 93/303 (30%), Gaps = 39/303 (12%) Query: 358 FLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSI 417 + V L EE + + +++ + + E + I Sbjct: 47 QRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKV--------HPEGKFVVDI 98 Query: 418 TS--DLLDSSSR-FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVS 474 D+ D + + ++ L K + + P E + Sbjct: 99 DKNIDINDVTPNSRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIK 158 Query: 475 GYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 +EV++ +G+A + + + G G+GK+ L + + Sbjct: 159 EI---KEVIELPVKHPELFDALGIA------QPKGVLLYGPPGTGKTLLARAVAH-HTEC 208 Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588 I S+++Q E + L + I +E D I +++I+ +GGD Sbjct: 209 TFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEV 268 Query: 589 AR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR--RY-IVIPFDKPIANRDA 641 R L E+ + + N+ + D A R R I F P N +A Sbjct: 269 QRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DPALLRPGRIDRKIEF--PPPNEEA 323 Query: 642 SFA 644 Sbjct: 324 RLD 326 >gi|289743503|gb|ADD20499.1| 26S proteasome regulatory complex ATPase RPT6 [Glossina morsitans morsitans] Length = 404 Score = 48.3 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 47/303 (15%), Positives = 93/303 (30%), Gaps = 39/303 (12%) Query: 358 FLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSI 417 + V L EE + + +++ + + E + I Sbjct: 46 QRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKV--------HPEGKFVVDI 97 Query: 418 TS--DLLDSSSR-FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVS 474 D+ D + + ++ L K + + P E + Sbjct: 98 DKNIDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIK 157 Query: 475 GYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 +EV++ +G+A + + + G G+GK+ L + + Sbjct: 158 EI---KEVIELPVKHPELFDALGIA------QPKGVLLYGPPGTGKTLLARAVAH-HTEC 207 Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588 I S+++Q E + L + I +E D I +++I+ +GGD Sbjct: 208 TFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEV 267 Query: 589 AR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR--RY-IVIPFDKPIANRDA 641 R L E+ + + N+ + D A R R I F P N +A Sbjct: 268 QRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DPALLRPGRIDRKIEF--PPPNEEA 322 Query: 642 SFA 644 Sbjct: 323 RLD 325 >gi|170048670|ref|XP_001870728.1| 26S protease regulatory subunit 8 [Culex quinquefasciatus] gi|167870706|gb|EDS34089.1| 26S protease regulatory subunit 8 [Culex quinquefasciatus] Length = 402 Score = 48.3 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 47/303 (15%), Positives = 93/303 (30%), Gaps = 39/303 (12%) Query: 358 FLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSI 417 + V L EE + + +++ + + E + I Sbjct: 44 QRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKV--------HPEGKFVVDI 95 Query: 418 TS--DLLDSSSR-FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVS 474 D+ D + + ++ L K + + P E + Sbjct: 96 DKNIDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIK 155 Query: 475 GYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 +EV++ +G+A + + + G G+GK+ L + + Sbjct: 156 EI---KEVIELPVKHPELFDALGIA------QPKGVLLYGPPGTGKTLLARAVAH-HTEC 205 Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588 I S+++Q E + L + I +E D I +++I+ +GGD Sbjct: 206 TFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEV 265 Query: 589 AR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR--RY-IVIPFDKPIANRDA 641 R L E+ + + N+ + D A R R I F P N +A Sbjct: 266 QRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DPALLRPGRIDRKIEF--PPPNEEA 320 Query: 642 SFA 644 Sbjct: 321 RLD 323 >gi|157106669|ref|XP_001649429.1| 26S protease regulatory subunit [Aedes aegypti] gi|157136893|ref|XP_001663850.1| 26S protease regulatory subunit [Aedes aegypti] gi|108868799|gb|EAT33024.1| 26S protease regulatory subunit [Aedes aegypti] gi|108869833|gb|EAT34058.1| 26S protease regulatory subunit [Aedes aegypti] Length = 403 Score = 48.3 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 47/303 (15%), Positives = 93/303 (30%), Gaps = 39/303 (12%) Query: 358 FLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSI 417 + V L EE + + +++ + + E + I Sbjct: 45 QRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKV--------HPEGKFVVDI 96 Query: 418 TS--DLLDSSSR-FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVS 474 D+ D + + ++ L K + + P E + Sbjct: 97 DKNIDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIK 156 Query: 475 GYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 +EV++ +G+A + + + G G+GK+ L + + Sbjct: 157 EI---KEVIELPVKHPELFDALGIA------QPKGVLLYGPPGTGKTLLARAVAH-HTEC 206 Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588 I S+++Q E + L + I +E D I +++I+ +GGD Sbjct: 207 TFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEV 266 Query: 589 AR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR--RY-IVIPFDKPIANRDA 641 R L E+ + + N+ + D A R R I F P N +A Sbjct: 267 QRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DPALLRPGRIDRKIEF--PPPNEEA 321 Query: 642 SFA 644 Sbjct: 322 RLD 324 >gi|58376339|ref|XP_308557.2| AGAP007243-PA [Anopheles gambiae str. PEST] gi|55245639|gb|EAA04200.3| AGAP007243-PA [Anopheles gambiae str. PEST] Length = 403 Score = 48.3 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 47/303 (15%), Positives = 93/303 (30%), Gaps = 39/303 (12%) Query: 358 FLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSI 417 + V L EE + + +++ + + E + I Sbjct: 45 QRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKV--------HPEGKFVVDI 96 Query: 418 TS--DLLDSSSR-FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVS 474 D+ D + + ++ L K + + P E + Sbjct: 97 DKNIDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIK 156 Query: 475 GYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 +EV++ +G+A + + + G G+GK+ L + + Sbjct: 157 EI---KEVIELPVKHPELFDALGIA------QPKGVLLYGPPGTGKTLLARAVAH-HTEC 206 Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588 I S+++Q E + L + I +E D I +++I+ +GGD Sbjct: 207 TFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEV 266 Query: 589 AR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR--RY-IVIPFDKPIANRDA 641 R L E+ + + N+ + D A R R I F P N +A Sbjct: 267 QRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DPALLRPGRIDRKIEF--PPPNEEA 321 Query: 642 SFA 644 Sbjct: 322 RLD 324 >gi|209170969|ref|YP_002268116.1| DNA helicase [Agrotis ipsilon multiple nucleopolyhedrovirus] gi|208436560|gb|ACI28787.1| DNA helicase [Agrotis ipsilon multiple nucleopolyhedrovirus] Length = 1210 Score = 48.3 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 29/189 (15%), Positives = 59/189 (31%), Gaps = 25/189 (13%) Query: 495 LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLI 554 + + + +++ G GSGKS+ + + +A+ + ++ Sbjct: 905 IPTDYEKCCLYLNGKPGSGKSSFFAVFDHFVVVHKHDSAKYTLTKKDTNEMEAD------ 958 Query: 555 RLMGSRIVIISETNENDEINAAKIKQMT-GGDCMTARLNYGNTYSESPASFTPFIVPNKH 613 I + NE + + K T Y + + +F IV NK Sbjct: 959 ----KMISQLYVINEMKVCDDSFFKSTADSTKSNTVCRKYEGSQ-KYEGNFKLMIVNNKP 1013 Query: 614 LFVRNPDDAWWRRYIVIPFDKPIAN------------RDASFA-QKLETKYTLEAKKWFL 660 L + + D R+ VI D ++ +F +K + + FL Sbjct: 1014 LHISDYDKGVRNRFAVIYTDHLFEENTSFNGSIYWHIKNKTFPMEKSYIDELAKPVRLFL 1073 Query: 661 KGVKAYISK 669 + Y Sbjct: 1074 SHILMYKRN 1082 >gi|297663656|ref|XP_002810286.1| PREDICTED: DNA-binding protein RFX5 isoform 1 [Pongo abelii] gi|297663658|ref|XP_002810287.1| PREDICTED: DNA-binding protein RFX5 isoform 2 [Pongo abelii] Length = 616 Score = 48.3 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 18/104 (17%), Positives = 34/104 (32%), Gaps = 10/104 (9%) Query: 670 GLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYD 729 G P EE WI + + + S+ +Y +Y E Sbjct: 75 GDKSSEPSTLSN--EEYMYA----YRWIRNHLEEHTDTCLPKQSVYDAYRKYC--ESLAC 126 Query: 730 RKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773 + +ST +++ IK ++ +SK G++ K Sbjct: 127 CRPLSTANFGKIIRE--IFPDIKARRLGGRGQSKYCYSGIRRKT 168 >gi|284005421|ref|NP_001164962.1| DNA-binding protein RFX5 [Oryctolagus cuniculus] gi|217030856|gb|ACJ74018.1| regulatory factor X, 5, isoform 1 (predicted) [Oryctolagus cuniculus] Length = 615 Score = 48.3 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 18/104 (17%), Positives = 34/104 (32%), Gaps = 10/104 (9%) Query: 670 GLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYD 729 G P EE WI + + + S+ +Y +Y E Sbjct: 75 GDKSSEPSTLSN--EEYMYA----YRWIRNHLEEHTDTCLPKQSVYDAYRKYC--ESLAC 126 Query: 730 RKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773 + +ST +++ IK ++ +SK G++ K Sbjct: 127 CRPLSTANFGKIIRE--IFPDIKARRLGGRGQSKYCYSGIRRKT 168 >gi|196475698|gb|ACG76407.1| regulatory factor X, 5, isoform 1 (predicted) [Otolemur garnettii] Length = 610 Score = 48.3 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 18/104 (17%), Positives = 34/104 (32%), Gaps = 10/104 (9%) Query: 670 GLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYD 729 G P EE WI + + + S+ +Y +Y E Sbjct: 75 GDKSSEPSTLSN--EEYMYA----YRWIRNHLEEHTDTCLPKQSVYDAYRKYC--ESLAC 126 Query: 730 RKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773 + +ST +++ IK ++ +SK G++ K Sbjct: 127 CRPLSTANFGKIIRE--IFPDIKARRLGGRGQSKYCYSGIRRKT 168 >gi|311254332|ref|XP_003125814.1| PREDICTED: DNA-binding protein RFX5-like [Sus scrofa] Length = 619 Score = 48.3 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 18/104 (17%), Positives = 34/104 (32%), Gaps = 10/104 (9%) Query: 670 GLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYD 729 G P EE WI + + + S+ +Y +Y E Sbjct: 75 GDKSSEPSTLSN--EEYMYA----YRWIRNHLEEHTDTCLPKQSVYDAYRKYC--ESLAC 126 Query: 730 RKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773 + +ST +++ IK ++ +SK G++ K Sbjct: 127 CRPLSTANFGKIIRE--IFPDIKARRLGGRGQSKYCYSGIRRKT 168 >gi|189055332|dbj|BAG35216.1| unnamed protein product [Homo sapiens] Length = 616 Score = 48.3 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 18/104 (17%), Positives = 34/104 (32%), Gaps = 10/104 (9%) Query: 670 GLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYD 729 G P EE WI + + + S+ +Y +Y E Sbjct: 75 GDKSSEPSTLSN--EEYMYA----YRWIRNHLEEHTDTCLPKQSVYDAYRKYC--ESLAC 126 Query: 730 RKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773 + +ST +++ IK ++ +SK G++ K Sbjct: 127 CRPLSTANFGKIIRE--IFPDIKARRLGGRGQSKYCYSGIRRKT 168 >gi|183637590|gb|ACC64592.1| regulatory factor X, 5, isoform 2 (predicted) [Rhinolophus ferrumequinum] Length = 606 Score = 48.3 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 18/104 (17%), Positives = 34/104 (32%), Gaps = 10/104 (9%) Query: 670 GLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYD 729 G P EE WI + + + S+ +Y +Y E Sbjct: 75 GDKSSEPSTLSN--EEYMYA----YRWIRNHLEEHTDTCLPKQSVYDAYRKYC--ESLAC 126 Query: 730 RKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773 + +ST +++ IK ++ +SK G++ K Sbjct: 127 CRPLSTANFGKIIRE--IFPDIKARRLGGRGQSKYCYSGIRRKT 168 >gi|169410924|gb|ACA57934.1| regulatory factor X, 5, isoform 1 (predicted) [Callicebus moloch] Length = 620 Score = 48.3 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 18/104 (17%), Positives = 34/104 (32%), Gaps = 10/104 (9%) Query: 670 GLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYD 729 G P EE WI + + + S+ +Y +Y E Sbjct: 75 GDKSSEPSTLSN--EEYMYA----YRWIRNHLEEHTDTCLPKQSVYDAYRKYC--ESLAC 126 Query: 730 RKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773 + +ST +++ IK ++ +SK G++ K Sbjct: 127 CRPLSTANFGKIIRE--IFPDIKARRLGGRGQSKYCYSGIRRKT 168 >gi|296228785|ref|XP_002759957.1| PREDICTED: DNA-binding protein RFX5 [Callithrix jacchus] gi|166092114|gb|ABY82094.1| regulatory factor X, 5, isoform 1 (predicted) [Callithrix jacchus] Length = 618 Score = 48.3 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 18/104 (17%), Positives = 34/104 (32%), Gaps = 10/104 (9%) Query: 670 GLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYD 729 G P EE WI + + + S+ +Y +Y E Sbjct: 75 GDKSSEPSTLSN--EEYMYA----YRWIRNHLEEHTDTCLPKQSVYDAYRKYC--ESLAC 126 Query: 730 RKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773 + +ST +++ IK ++ +SK G++ K Sbjct: 127 CRPLSTANFGKIIRE--IFPDIKARRLGGRGQSKYCYSGIRRKT 168 >gi|281182430|ref|NP_001162544.1| DNA-binding protein RFX5 [Papio anubis] gi|163781020|gb|ABY40796.1| regulatory factor X, 5, isoform 2 (predicted) [Papio anubis] Length = 621 Score = 48.3 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 18/104 (17%), Positives = 34/104 (32%), Gaps = 10/104 (9%) Query: 670 GLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYD 729 G P EE WI + + + S+ +Y +Y E Sbjct: 75 GDKSSEPSTLSN--EEYMYA----YRWIRNHLEEHTDTCLPKQSVYDAYRKYC--ESLAC 126 Query: 730 RKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773 + +ST +++ IK ++ +SK G++ K Sbjct: 127 CRPLSTANFGKIIRE--IFPDIKARRLGGRGQSKYCYSGIRRKT 168 >gi|150439358|emb|CAO72156.1| regulatory factor X, 5 (influences HLA class II expression) [Homo sapiens] Length = 230 Score = 48.3 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 18/104 (17%), Positives = 34/104 (32%), Gaps = 10/104 (9%) Query: 670 GLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYD 729 G P EE WI + + + S+ +Y +Y E Sbjct: 75 GDKSSEPSTLSN--EEYMYA----YRWIRNHLEEHTDTCLPKQSVYDAYRKYC--ESLAC 126 Query: 730 RKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773 + +ST +++ IK ++ +SK G++ K Sbjct: 127 CRPLSTANFGKIIRE--IFPDIKARRLGGRGQSKYCYSGIRRKT 168 >gi|149751255|ref|XP_001492313.1| PREDICTED: similar to DNA-binding protein RFX5 (Regulatory factor X 5) [Equus caballus] Length = 606 Score = 48.3 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 18/104 (17%), Positives = 34/104 (32%), Gaps = 10/104 (9%) Query: 670 GLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYD 729 G P EE WI + + + S+ +Y +Y E Sbjct: 75 GDKSSEPSTLSN--EEYMYA----YRWIRNHLEEHTDTCLPKQSVYDAYRKYC--ESLAC 126 Query: 730 RKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773 + +ST +++ IK ++ +SK G++ K Sbjct: 127 CRPLSTANFGKIIRE--IFPDIKARRLGGRGQSKYCYSGIRRKT 168 >gi|122889236|emb|CAM13081.1| regulatory factor X, 5 (influences HLA class II expression) [Homo sapiens] Length = 596 Score = 48.3 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 18/104 (17%), Positives = 34/104 (32%), Gaps = 10/104 (9%) Query: 670 GLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYD 729 G P EE WI + + + S+ +Y +Y E Sbjct: 75 GDKSSEPSTLSN--EEYMYA----YRWIRNHLEEHTDTCLPKQSVYDAYRKYC--ESLAC 126 Query: 730 RKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773 + +ST +++ IK ++ +SK G++ K Sbjct: 127 CRPLSTANFGKIIRE--IFPDIKARRLGGRGQSKYCYSGIRRKT 168 >gi|114559454|ref|XP_001171715.1| PREDICTED: regulatory factor X, 5 isoform 1 [Pan troglodytes] gi|114559456|ref|XP_001171728.1| PREDICTED: regulatory factor X, 5 isoform 2 [Pan troglodytes] gi|114559458|ref|XP_001171744.1| PREDICTED: regulatory factor X, 5 isoform 3 [Pan troglodytes] gi|114559460|ref|XP_001171762.1| PREDICTED: regulatory factor X, 5 isoform 4 [Pan troglodytes] gi|114559462|ref|XP_001171783.1| PREDICTED: regulatory factor X, 5 isoform 5 [Pan troglodytes] gi|114559464|ref|XP_001171802.1| PREDICTED: regulatory factor X, 5 isoform 6 [Pan troglodytes] gi|332810259|ref|XP_513794.2| PREDICTED: DNA-binding protein RFX5 isoform 7 [Pan troglodytes] Length = 616 Score = 48.3 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 18/104 (17%), Positives = 34/104 (32%), Gaps = 10/104 (9%) Query: 670 GLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYD 729 G P EE WI + + + S+ +Y +Y E Sbjct: 75 GDKSSEPSTLSN--EEYMYA----YRWIRNHLEEHTDTCLPKQSVYDAYRKYC--ESLAC 126 Query: 730 RKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773 + +ST +++ IK ++ +SK G++ K Sbjct: 127 CRPLSTANFGKIIRE--IFPDIKARRLGGRGQSKYCYSGIRRKT 168 >gi|109016195|ref|XP_001106865.1| PREDICTED: DNA-binding protein RFX5 isoform 1 [Macaca mulatta] gi|109016204|ref|XP_001107059.1| PREDICTED: DNA-binding protein RFX5 isoform 4 [Macaca mulatta] Length = 620 Score = 48.3 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 18/104 (17%), Positives = 34/104 (32%), Gaps = 10/104 (9%) Query: 670 GLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYD 729 G P EE WI + + + S+ +Y +Y E Sbjct: 75 GDKSSEPSTLSN--EEYMYA----YRWIRNHLEEHTDTCLPKQSVYDAYRKYC--ESLAC 126 Query: 730 RKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773 + +ST +++ IK ++ +SK G++ K Sbjct: 127 CRPLSTANFGKIIRE--IFPDIKARRLGGRGQSKYCYSGIRRKT 168 >gi|62898784|dbj|BAD97246.1| regulatory factor X, 5 variant [Homo sapiens] Length = 616 Score = 48.3 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 18/104 (17%), Positives = 34/104 (32%), Gaps = 10/104 (9%) Query: 670 GLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYD 729 G P EE WI + + + S+ +Y +Y E Sbjct: 75 GDKSSEPSTLSN--EEYMYA----YRWIRNHLEEHTDTCLPKQSVYDAYRKYC--ESLAC 126 Query: 730 RKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773 + +ST +++ IK ++ +SK G++ K Sbjct: 127 CRPLSTANFGKIIRE--IFPDIKARRLGGRGQSKYCYSGIRRKT 168 >gi|329664492|ref|NP_001192655.1| DNA-binding protein RFX5 [Bos taurus] gi|297472710|ref|XP_002686088.1| PREDICTED: regulatory factor X, 5 (influences HLA class II expression) [Bos taurus] gi|296489603|gb|DAA31716.1| regulatory factor X, 5 (influences HLA class II expression) [Bos taurus] Length = 615 Score = 48.3 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 18/104 (17%), Positives = 34/104 (32%), Gaps = 10/104 (9%) Query: 670 GLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYD 729 G P EE WI + + + S+ +Y +Y E Sbjct: 75 GDKSSEPSTLSN--EEYMYA----YRWIRNHLEEHTDTCLPKQSVYDAYRKYC--ESLAC 126 Query: 730 RKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773 + +ST +++ IK ++ +SK G++ K Sbjct: 127 CRPLSTANFGKIIRE--IFPDIKARRLGGRGQSKYCYSGIRRKT 168 >gi|57098975|ref|XP_540315.1| PREDICTED: similar to DNA-binding protein RFX5 (Regulatory factor X subunit 5) isoform 1 [Canis familiaris] gi|73981414|ref|XP_850613.1| PREDICTED: similar to DNA-binding protein RFX5 (Regulatory factor X subunit 5) isoform 2 [Canis familiaris] gi|73981416|ref|XP_861896.1| PREDICTED: similar to DNA-binding protein RFX5 (Regulatory factor X subunit 5) isoform 3 [Canis familiaris] Length = 619 Score = 48.3 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 18/104 (17%), Positives = 34/104 (32%), Gaps = 10/104 (9%) Query: 670 GLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYD 729 G P EE WI + + + S+ +Y +Y E Sbjct: 75 GDKSSEPSTLSN--EEYMYA----YRWIRNHLEEHTDTCLPKQSVYDAYRKYC--ESLAC 126 Query: 730 RKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773 + +ST +++ IK ++ +SK G++ K Sbjct: 127 CRPLSTANFGKIIRE--IFPDIKARRLGGRGQSKYCYSGIRRKT 168 >gi|55726074|emb|CAH89811.1| hypothetical protein [Pongo abelii] Length = 597 Score = 48.3 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 18/104 (17%), Positives = 34/104 (32%), Gaps = 10/104 (9%) Query: 670 GLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYD 729 G P EE WI + + + S+ +Y +Y E Sbjct: 75 GDKSSEPSTLSN--EEYMYA----YRWIRNHLEEHTDTCLPKQSVYDAYRKYC--ESLAC 126 Query: 730 RKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773 + +ST +++ IK ++ +SK G++ K Sbjct: 127 CRPLSTANFGKIIRE--IFPDIKARRLGGRGQSKYCYSGIRRKT 168 >gi|4557843|ref|NP_000440.1| DNA-binding protein RFX5 [Homo sapiens] gi|71040090|ref|NP_001020774.1| DNA-binding protein RFX5 [Homo sapiens] gi|1350587|sp|P48382|RFX5_HUMAN RecName: Full=DNA-binding protein RFX5; AltName: Full=Regulatory factor X 5 gi|840789|emb|CAA59771.1| binding regulatory factor [Homo sapiens] gi|17028337|gb|AAH17471.1| Regulatory factor X, 5 (influences HLA class II expression) [Homo sapiens] gi|55663923|emb|CAH70327.1| regulatory factor X, 5 (influences HLA class II expression) [Homo sapiens] gi|119573831|gb|EAW53446.1| regulatory factor X, 5 (influences HLA class II expression), isoform CRA_a [Homo sapiens] gi|119573832|gb|EAW53447.1| regulatory factor X, 5 (influences HLA class II expression), isoform CRA_a [Homo sapiens] gi|119573833|gb|EAW53448.1| regulatory factor X, 5 (influences HLA class II expression), isoform CRA_a [Homo sapiens] gi|123983134|gb|ABM83308.1| regulatory factor X, 5 (influences HLA class II expression) [synthetic construct] gi|123997837|gb|ABM86520.1| regulatory factor X, 5 (influences HLA class II expression) [synthetic construct] gi|208967272|dbj|BAG73650.1| regulatory factor X, 5 [synthetic construct] Length = 616 Score = 48.3 bits (113), Expect = 0.005, Method: Composition-based stats. Identities = 18/104 (17%), Positives = 34/104 (32%), Gaps = 10/104 (9%) Query: 670 GLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYD 729 G P EE WI + + + S+ +Y +Y E Sbjct: 75 GDKSSEPSTLSN--EEYMYA----YRWIRNHLEEHTDTCLPKQSVYDAYRKYC--ESLAC 126 Query: 730 RKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773 + +ST +++ IK ++ +SK G++ K Sbjct: 127 CRPLSTANFGKIIRE--IFPDIKARRLGGRGQSKYCYSGIRRKT 168 >gi|160882595|ref|ZP_02063598.1| hypothetical protein BACOVA_00548 [Bacteroides ovatus ATCC 8483] gi|156112039|gb|EDO13784.1| hypothetical protein BACOVA_00548 [Bacteroides ovatus ATCC 8483] Length = 776 Score = 48.3 bits (113), Expect = 0.006, Method: Composition-based stats. Identities = 43/365 (11%), Positives = 101/365 (27%), Gaps = 55/365 (15%) Query: 356 MNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWF----NTDYRRQNVEENSKAKSTA-QSLE 410 + + +++ E+ K K + + + RR V+E + + E Sbjct: 350 LELPLHNAYQYTSKTDQAEEKEKEPKICQIIKFMDEHYETRRNVVKEQIEFRKIMPALPE 409 Query: 411 AGSIFSITSDLLDSSSRFLGE-QDGILD--------LETGQKVKPTKELYITKSTGTPFV 461 D ++ ++ + I +++ ++ S Sbjct: 410 TELPPFNAVRTKDINTFYINAHINKICCTQADLKAVVDSDYAKPFNPFVHYFTSRKAWNG 469 Query: 462 EGEPSQEFLDLV---SGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLM 518 + + + V F + + V A+ + + + + G G GKST + Sbjct: 470 KTDFIGQMTKTVQAADQAFFEDSFRRWLVGMVACAIDDNVQNHQLMLLHGAQGKGKSTFI 529 Query: 519 NLIKYA-FGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK 577 + + Y + N L++L ++ + E + Sbjct: 530 RHLLPPELKDYY-----------RNGMIIPENNNHLLQLSSCLLINLDEFDTLSPERMQN 578 Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK---HLFVRNPDDAWWRRYIVIPFDK 634 +K + D + R Y + N V+ RR + Sbjct: 579 LKSLITQDVVNERKVYDIQNYTYIRRASFIASTNNPHCMPDVKEN-----RRILF----S 629 Query: 635 PIANRDASFAQKLETKYTLEAKKWFL--KGVKAYISKGLDVDIPEVC--LKAKEEERQGT 690 + N D + A+ + L +G + + E L + E + Sbjct: 630 TLLNIDYH---TPVNHEGIYAQAYALYRQGFQYWYEN-------EEITFLNNRNEAFRQK 679 Query: 691 DTYQA 695 D + Sbjct: 680 DPIEE 684 >gi|66395453|ref|YP_239849.1| ORF003 [Staphylococcus phage 2638A] gi|62635880|gb|AAX90991.1| ORF003 [Staphylococcus phage 2638A] Length = 816 Score = 48.3 bits (113), Expect = 0.006, Method: Composition-based stats. Identities = 37/251 (14%), Positives = 76/251 (30%), Gaps = 37/251 (14%) Query: 462 EGEPSQEFLDLVSGYFESEEV-------MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGK 514 E + L Y ++ T V + G K + + G G GK Sbjct: 481 EWDKKPRLEKLFIKYLGVKDTKVNRTITRKALTAGVARVMEPGCKFDYMLTLYGPQGVGK 540 Query: 515 STLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEIN 574 S ++ + + + +++ + L G I+ ++E + Sbjct: 541 SAILKKLGGGWFSDSLVSVTG--------------KEAYEALQGVWIMEMAELAATRKAE 586 Query: 575 AAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK 634 IK R+ YG+ + P NK F+R+ RR+ P Sbjct: 587 VEAIKHFISKQIDRFRVAYGHYIEDFPRQCIFIGTTNKVDFLRDETGG--RRFW--PMTV 642 Query: 635 PIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKG----LDVDIPEVCLKAKEEERQGT 690 + ++ KL + K Y +G LD ++ E + + + + Sbjct: 643 NPDKVEVKWS-KLTKDEINQIWAEA----KHYYEQGEELYLDPELEEEMRSIQSKHTEES 697 Query: 691 DTYQ---AWID 698 +++ Sbjct: 698 PYLGIIEEFLN 708 >gi|195393634|ref|XP_002055458.1| GJ19383 [Drosophila virilis] gi|194149968|gb|EDW65659.1| GJ19383 [Drosophila virilis] Length = 405 Score = 48.0 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 45/301 (14%), Positives = 91/301 (30%), Gaps = 35/301 (11%) Query: 358 FLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSI 417 + V L EE + + +++ + + L+ + Sbjct: 47 QRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDLDKNIDIN- 105 Query: 418 TSDLLDSSSR-FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY 476 D + + ++ L K + + P E + Sbjct: 106 -----DVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEI 160 Query: 477 FESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530 +EV++ +G+A + + + G G+GK+ L + + Sbjct: 161 ---KEVIELPVKHPELFDALGIA------QPKGVLLYGPPGTGKTLLARAVAH-HTECTF 210 Query: 531 INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR 590 I S+++Q E + L + I +E D I +++I+ +GGD R Sbjct: 211 IRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQR 270 Query: 591 ----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR--RY-IVIPFDKPIANRDASF 643 L E+ + + N+ + D A R R I F P N +A Sbjct: 271 TMLELLNQLDGFEATKNIKVIMATNRIDIL---DPALLRPGRIDRKIEF--PPPNEEARL 325 Query: 644 A 644 Sbjct: 326 D 326 >gi|195134921|ref|XP_002011885.1| GI14329 [Drosophila mojavensis] gi|193909139|gb|EDW08006.1| GI14329 [Drosophila mojavensis] Length = 405 Score = 48.0 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 45/301 (14%), Positives = 91/301 (30%), Gaps = 35/301 (11%) Query: 358 FLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSI 417 + V L EE + + +++ + + L+ + Sbjct: 47 QRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDLDKNIDIN- 105 Query: 418 TSDLLDSSSR-FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY 476 D + + ++ L K + + P E + Sbjct: 106 -----DVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEI 160 Query: 477 FESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530 +EV++ +G+A + + + G G+GK+ L + + Sbjct: 161 ---KEVIELPVKHPELFDALGIA------QPKGVLLYGPPGTGKTLLARAVAH-HTECTF 210 Query: 531 INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR 590 I S+++Q E + L + I +E D I +++I+ +GGD R Sbjct: 211 IRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQR 270 Query: 591 ----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR--RY-IVIPFDKPIANRDASF 643 L E+ + + N+ + D A R R I F P N +A Sbjct: 271 TMLELLNQLDGFEATKNIKVIMATNRIDIL---DPALLRPGRIDRKIEF--PPPNEEARL 325 Query: 644 A 644 Sbjct: 326 D 326 >gi|195044618|ref|XP_001991849.1| GH11847 [Drosophila grimshawi] gi|193901607|gb|EDW00474.1| GH11847 [Drosophila grimshawi] Length = 405 Score = 48.0 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 45/301 (14%), Positives = 91/301 (30%), Gaps = 35/301 (11%) Query: 358 FLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSI 417 + V L EE + + +++ + + L+ + Sbjct: 47 QRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDLDKNIDIN- 105 Query: 418 TSDLLDSSSR-FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY 476 D + + ++ L K + + P E + Sbjct: 106 -----DVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEI 160 Query: 477 FESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530 +EV++ +G+A + + + G G+GK+ L + + Sbjct: 161 ---KEVIELPVKHPELFDALGIA------QPKGVLLYGPPGTGKTLLARAVAH-HTECTF 210 Query: 531 INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR 590 I S+++Q E + L + I +E D I +++I+ +GGD R Sbjct: 211 IRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQR 270 Query: 591 ----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR--RY-IVIPFDKPIANRDASF 643 L E+ + + N+ + D A R R I F P N +A Sbjct: 271 TMLELLNQLDGFEATKNIKVIMATNRIDIL---DPALLRPGRIDRKIEF--PPPNEEARL 325 Query: 644 A 644 Sbjct: 326 D 326 >gi|194897562|ref|XP_001978679.1| GG19719 [Drosophila erecta] gi|195346140|ref|XP_002039625.1| GM23074 [Drosophila sechellia] gi|195482260|ref|XP_002101976.1| GE17917 [Drosophila yakuba] gi|195567993|ref|XP_002107540.1| GD17527 [Drosophila simulans] gi|190650328|gb|EDV47606.1| GG19719 [Drosophila erecta] gi|194134851|gb|EDW56367.1| GM23074 [Drosophila sechellia] gi|194189500|gb|EDX03084.1| GE17917 [Drosophila yakuba] gi|194204950|gb|EDX18526.1| GD17527 [Drosophila simulans] Length = 405 Score = 48.0 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 45/301 (14%), Positives = 91/301 (30%), Gaps = 35/301 (11%) Query: 358 FLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSI 417 + V L EE + + +++ + + L+ + Sbjct: 47 QRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDLDKNIDIN- 105 Query: 418 TSDLLDSSSR-FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY 476 D + + ++ L K + + P E + Sbjct: 106 -----DVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEI 160 Query: 477 FESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530 +EV++ +G+A + + + G G+GK+ L + + Sbjct: 161 ---KEVIELPVKHPELFDALGIA------QPKGVLLYGPPGTGKTLLARAVAH-HTECTF 210 Query: 531 INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR 590 I S+++Q E + L + I +E D I +++I+ +GGD R Sbjct: 211 IRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQR 270 Query: 591 ----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR--RY-IVIPFDKPIANRDASF 643 L E+ + + N+ + D A R R I F P N +A Sbjct: 271 TMLELLNQLDGFEATKNIKVIMATNRIDIL---DPALLRPGRIDRKIEF--PPPNEEARL 325 Query: 644 A 644 Sbjct: 326 D 326 >gi|194769924|ref|XP_001967051.1| GF21725 [Drosophila ananassae] gi|190622846|gb|EDV38370.1| GF21725 [Drosophila ananassae] Length = 405 Score = 48.0 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 45/301 (14%), Positives = 91/301 (30%), Gaps = 35/301 (11%) Query: 358 FLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSI 417 + V L EE + + +++ + + L+ + Sbjct: 47 QRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDLDKNIDIN- 105 Query: 418 TSDLLDSSSR-FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY 476 D + + ++ L K + + P E + Sbjct: 106 -----DVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEI 160 Query: 477 FESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530 +EV++ +G+A + + + G G+GK+ L + + Sbjct: 161 ---KEVIELPVKHPELFDALGIA------QPKGVLLYGPPGTGKTLLARAVAH-HTECTF 210 Query: 531 INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR 590 I S+++Q E + L + I +E D I +++I+ +GGD R Sbjct: 211 IRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQR 270 Query: 591 ----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR--RY-IVIPFDKPIANRDASF 643 L E+ + + N+ + D A R R I F P N +A Sbjct: 271 TMLELLNQLDGFEATKNIKVIMATNRIDIL---DPALLRPGRIDRKIEF--PPPNEEARL 325 Query: 644 A 644 Sbjct: 326 D 326 >gi|125983936|ref|XP_001355733.1| GA13327 [Drosophila pseudoobscura pseudoobscura] gi|54644049|gb|EAL32792.1| GA13327 [Drosophila pseudoobscura pseudoobscura] Length = 405 Score = 48.0 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 45/301 (14%), Positives = 91/301 (30%), Gaps = 35/301 (11%) Query: 358 FLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSI 417 + V L EE + + +++ + + L+ + Sbjct: 47 QRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDLDKNIDIN- 105 Query: 418 TSDLLDSSSR-FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY 476 D + + ++ L K + + P E + Sbjct: 106 -----DVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEI 160 Query: 477 FESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530 +EV++ +G+A + + + G G+GK+ L + + Sbjct: 161 ---KEVIELPVKHPELFDALGIA------QPKGVLLYGPPGTGKTLLARAVAH-HTECTF 210 Query: 531 INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR 590 I S+++Q E + L + I +E D I +++I+ +GGD R Sbjct: 211 IRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQR 270 Query: 591 ----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR--RY-IVIPFDKPIANRDASF 643 L E+ + + N+ + D A R R I F P N +A Sbjct: 271 TMLELLNQLDGFEATKNIKVIMATNRIDIL---DPALLRPGRIDRKIEF--PPPNEEARL 325 Query: 644 A 644 Sbjct: 326 D 326 >gi|165969093|ref|YP_001650993.1| helicase [Orgyia leucostigma NPV] gi|164663589|gb|ABY65809.1| helicase [Orgyia leucostigma NPV] Length = 1238 Score = 48.0 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 27/156 (17%), Positives = 50/156 (32%), Gaps = 11/156 (7%) Query: 485 YFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP 543 +L + + + I+ G GSGKS+ L++ F +A++ + + Sbjct: 924 LLMMHFDASLGIPSDFEKCCIYCTGEPGSGKSSNAELMEQIFVVH-KHDADSYTLSKKET 982 Query: 544 PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPAS 603 E I + NE E N + K A + A+ Sbjct: 983 DEMEA---------NKLISQLYVINEMKECNDSFFKTTADSTKSNAVCRKYQGSQKYEAN 1033 Query: 604 FTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR 639 + I+ NK L + N D R+ ++ Sbjct: 1034 YKLMIINNKPLHISNYDKGVRNRFAIVYMAHEFEEN 1069 >gi|313158753|gb|EFR58140.1| VirE N-terminal domain protein [Alistipes sp. HGB5] Length = 310 Score = 48.0 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 40/250 (16%), Positives = 65/250 (26%), Gaps = 45/250 (18%) Query: 64 PLYAFDIDSKDE---KTANTFKDTFEILHG-------------TPIVRIGQKPKILIPFR 107 L DID KD + + KD L IV I Q K+L+ FR Sbjct: 79 GLICMDIDRKDNLQVEGYDRLKDQLGRLPYVAFCGRSVGGEGYYAIVPIAQPNKLLLHFR 138 Query: 108 MNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSE 167 + DI + FV+Y+ P +E P ++ Sbjct: 139 SLQTKF-SAMGITIDPSCCDI--SRKRFVSYDPEPYINQEAEIYEGLGLADGAAVPDITG 195 Query: 168 EDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHD 227 T+P + + Q + Sbjct: 196 -----------NATLPGTDSEDEPLKEVLKYIQIIEQKKVD-------------ITAGYA 231 Query: 228 EWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTF 287 W+ + A+H+ G+E+ R S Y + + + RS F Sbjct: 232 NWLRIGYALHNAFGDF--GRELFHRVSSFHPRYSYVETDRLFSGLSKGNCANQVTIRSFF 289 Query: 288 TSLFYHHGKL 297 + H Sbjct: 290 YFVRQHGLDA 299 >gi|150439360|emb|CAO72157.1| regulatory factor X, 5 (influences HLA class II expression) [Homo sapiens] Length = 184 Score = 48.0 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 18/104 (17%), Positives = 34/104 (32%), Gaps = 10/104 (9%) Query: 670 GLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYD 729 G P EE WI + + + S+ +Y +Y E Sbjct: 75 GDKSSEPSTLSN--EEYMYA----YRWIRNHLEEHTDTCLPKQSVYDAYRKYC--ESLAC 126 Query: 730 RKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773 + +ST +++ IK ++ +SK G++ K Sbjct: 127 CRPLSTANFGKIIRE--IFPDIKARRLGGRGQSKYCYSGIRRKT 168 >gi|26989757|ref|NP_745182.1| TraC domain-containing protein [Pseudomonas putida KT2440] gi|24984651|gb|AAN68646.1|AE016494_6 pyocin R2_PP, traC domain protein [Pseudomonas putida KT2440] Length = 736 Score = 48.0 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 30/192 (15%), Positives = 61/192 (31%), Gaps = 24/192 (12%) Query: 446 PTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEV-------MDYFTRCVGMALLGGN 498 + T +E + + F + V + G Sbjct: 417 HDNAFH-PVCTYLARLEWDRVPRLERWLHEIFGVPRNEYSSKVGKRWMISAVARVMKPGC 475 Query: 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMG 558 KA + + G G+GKS+ + G + ++ + ++ + G Sbjct: 476 KADAVLILEGAQGAGKSSAL----GVLGGDWFMDTPFTLGDKDAFQA----------IRG 521 Query: 559 SRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRN 618 IV + E + ++ + K KQ T R +YG S+ P N+ ++++ Sbjct: 522 KWIVELGELDSFNKAESTKAKQFFSASIDTYRESYGRRTSDVPRQCVFAGTTNQDEYLKD 581 Query: 619 PDDAWWRRYIVI 630 RRY + Sbjct: 582 ATG--NRRYWPV 591 >gi|187921139|ref|YP_001890171.1| Primase 2 [Burkholderia phytofirmans PsJN] gi|187719577|gb|ACD20800.1| Primase 2 [Burkholderia phytofirmans PsJN] Length = 621 Score = 48.0 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 34/109 (31%), Gaps = 10/109 (9%) Query: 207 NREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFN 266 + TA + + W+ + A+ H + G EI WS+ YDE Sbjct: 5 QTDETARVRAALALIPAEDYGTWVDMAFALKHGLGDA--GFEIWDEWSRTAGNYDERAAR 62 Query: 267 YKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAM 315 W + T SLF+ + L + D A+ Sbjct: 63 TTWCSV-------KESGGKTLASLFWLAREHGFD-LRRGHYPDRLATAL 103 >gi|195438627|ref|XP_002067234.1| GK16292 [Drosophila willistoni] gi|194163319|gb|EDW78220.1| GK16292 [Drosophila willistoni] Length = 405 Score = 48.0 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 45/301 (14%), Positives = 91/301 (30%), Gaps = 35/301 (11%) Query: 358 FLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSI 417 + V L EE + + +++ + + L+ + Sbjct: 47 QRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDLDKNIDIN- 105 Query: 418 TSDLLDSSSR-FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY 476 D + + ++ L K + + P E + Sbjct: 106 -----DVAPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEI 160 Query: 477 FESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530 +EV++ +G+A + + + G G+GK+ L + + Sbjct: 161 ---KEVIELPVKHPELFDALGIA------QPKGVLLYGPPGTGKTLLARAVAH-HTECTF 210 Query: 531 INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR 590 I S+++Q E + L + I +E D I +++I+ +GGD R Sbjct: 211 IRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQR 270 Query: 591 ----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR--RY-IVIPFDKPIANRDASF 643 L E+ + + N+ + D A R R I F P N +A Sbjct: 271 TMLELLNQLDGFEATKNIKVIMATNRIDIL---DPALLRPGRIDRKIEF--PPPNEEARL 325 Query: 644 A 644 Sbjct: 326 D 326 >gi|77461916|ref|YP_351423.1| AAA ATPase, central region [Pseudomonas fluorescens Pf0-1] gi|77385919|gb|ABA77432.1| putative AAA ATPase [Pseudomonas fluorescens Pf0-1] Length = 389 Score = 48.0 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 28/197 (14%), Positives = 60/197 (30%), Gaps = 23/197 (11%) Query: 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMG 558 + G G GK+ I G ++ + + +L Sbjct: 130 HPTKSSVFVGAPGVGKTITARWIAAQLGVPLLVLDLTAVMSSLLGKSGANIRSALDYAKR 189 Query: 559 SRIVIISET------NENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612 + V+ + +DE + ++K++ E P++ N Sbjct: 190 TPCVLFLDEIDAIAKRRSDESDVGELKRLVT--------VILQEVDEWPSTGLLLAATNH 241 Query: 613 HLFVRNPDDAWWRRY-IVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGL 671 + D A WRR+ +V+ F P A ++ + +KW G+ +Y + Sbjct: 242 PELI---DPALWRRFDLVVEFKSPDAQTLEVAIRRFLGPDLPKFEKWI--GILSYAFQKH 296 Query: 672 DVDIPEVCLKAKEEERQ 688 + + R+ Sbjct: 297 SFSD---IEREIQRFRR 310 >gi|301767898|ref|XP_002919383.1| PREDICTED: DNA-binding protein RFX5-like [Ailuropoda melanoleuca] gi|281352871|gb|EFB28455.1| hypothetical protein PANDA_007988 [Ailuropoda melanoleuca] Length = 618 Score = 48.0 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 18/104 (17%), Positives = 34/104 (32%), Gaps = 10/104 (9%) Query: 670 GLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYD 729 G P EE WI + + + S+ +Y +Y E Sbjct: 75 GDKSSEPSTLSN--EEYMYAC----RWIRNHLEEHTDTCLPKQSVYDAYRKYC--ESLAC 126 Query: 730 RKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773 + +ST +++ IK ++ +SK G++ K Sbjct: 127 CRPLSTANFGKIIRE--IFPDIKARRLGGRGQSKYCYSGIRRKT 168 >gi|167462307|ref|ZP_02327396.1| AAA ATPase [Paenibacillus larvae subsp. larvae BRL-230010] gi|322384066|ref|ZP_08057787.1| hypothetical protein PL1_2195 [Paenibacillus larvae subsp. larvae B-3650] gi|321151239|gb|EFX44535.1| hypothetical protein PL1_2195 [Paenibacillus larvae subsp. larvae B-3650] Length = 370 Score = 48.0 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 38/274 (13%), Positives = 78/274 (28%), Gaps = 33/274 (12%) Query: 436 LDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYF--TRCVGMA 493 L G + P + L+ + + + + Sbjct: 58 LTRSMGIEPPPVDKDSFMSLVKISDYSTFDQTVILN--EQI--DKSIRRFLKERELMTKL 113 Query: 494 LLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL 553 + G K I G G GK+ L + + + +S I L Sbjct: 114 IANGIKPPNSILFYGPPGVGKTLLTKYVAHCLSLPLITLDLSSAISSYLGKTGQNLKKIL 173 Query: 554 IRLMGSRIVIISETNENDEI--------NAAKIKQMTGGDCMTARLNYGNTYSESPASFT 605 G I +E D + + ++K++ + E + + Sbjct: 174 --DYGKNSPSILLLDEFDAVAKRRDDPSDLGELKRIV-------NVLLKE--LEEWPAHS 222 Query: 606 PFIVPNKHLFVRNPDDAWWRRYIV---IPFDKPIANRDASFAQKLETKYTLEAKKWFLKG 662 + H D A WRR+ + IPF + + K +E + ++ Sbjct: 223 IIVGATNHPEF--LDKAIWRRFDLKIEIPFPN--EEQRFQLWKFYLNKEIVEIEDSLIRA 278 Query: 663 VKAYISKGLDVDIPEVCLKAKEEER-QGTDTYQA 695 V I + DI ++C + + +D ++ Sbjct: 279 VAKVIQQISPSDIKQICDHVLRQVIVEESDPIKS 312 >gi|297625631|ref|YP_003687394.1| hypothetical protein PFREUD_04140 [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296921396|emb|CBL55949.1| Hypothetical protein PFREUD_04140 [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 840 Score = 48.0 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 25/202 (12%), Positives = 48/202 (23%), Gaps = 18/202 (8%) Query: 26 GDKRPQRLGKWEEQLLSSEKIDKLPACGFGF-VCGVGEQPLYAFDIDSKDEKTANTFKDT 84 + W L +++ +L G G VCG + D+D+K + + Sbjct: 27 RSGKQVPPRGWPT-LTAADNRARLGHYGPGMAVCGAVTERWAFVDVDTKAGASIEAAEAW 85 Query: 85 FEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQG----HLDILG----CGQYFV 136 L +P R+ + G + +++ G + Sbjct: 86 LRGLGVSPWARVSTPSGGAHFYVSGAPGQANYPGETVAKLTGLVGVEVFGGIAPSAHFAF 145 Query: 137 AYNI----HPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLV--KDKKS 190 +P W P D L + P K K Sbjct: 146 LPGSERPKYPGRGYTVEWEHP--ELIDADATPLWNALAHAAAERRTGQGSPEEGAKSAKR 203 Query: 191 IIPSKTWTNNNNRQYTNREITA 212 ++ + E Sbjct: 204 AGTDTPPPSHPSEGRPRAEAYT 225 >gi|325288511|ref|YP_004264692.1| Primase 2 [Syntrophobotulus glycolicus DSM 8271] gi|324963912|gb|ADY54691.1| Primase 2 [Syntrophobotulus glycolicus DSM 8271] Length = 748 Score = 48.0 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 23/168 (13%), Positives = 45/168 (26%), Gaps = 20/168 (11%) Query: 225 SHDEWIPVVMAVHHETRGSSKGKEIARRWSKQG-STYDEENFNYKWDTFDFEEIGDTAKK 283 + W+ V MA+ ++ WS++ Y KWD+F Sbjct: 20 DYATWLSVGMALKEAGYTAAD----WDEWSRRDIGRYHAGECFRKWDSFRGAST------ 69 Query: 284 RSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYI 343 T ++ + D + + G K W + + Sbjct: 70 PVTAGTIVALAKDHGWRPE-----RDIGYELGWDSTIGGKDDLVVIQKGWLE----GREV 120 Query: 344 WSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDY 391 ++ +L + E ++ E K+ K N D Sbjct: 121 AEPDSWDHVGQLVKYLEILFEASENVGYVTESWEKDGKYLPTKGNWDR 168 >gi|70726782|ref|YP_253696.1| hypothetical protein SH1781 [Staphylococcus haemolyticus JCSC1435] gi|68447506|dbj|BAE05090.1| unnamed protein product [Staphylococcus haemolyticus JCSC1435] Length = 815 Score = 48.0 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 34/213 (15%), Positives = 67/213 (31%), Gaps = 30/213 (14%) Query: 493 ALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS 552 + G K + + G G GKS ++ + + + EA Sbjct: 518 VMEPGCKFDYMLTLYGPQGVGKSAILKKL-----GGAWFSDSLVSVTGKEAYEA------ 566 Query: 553 LIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612 L G ++ ++E + IK R+ YG+ + P NK Sbjct: 567 ---LQGVWLMEMAELAATRKAEVEAIKHFISKQIDRFRVAYGHYIEDFPRQCIFIGTTNK 623 Query: 613 HLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKG-- 670 F+R+ RR+ P + ++ KL + + K Y KG Sbjct: 624 VDFLRDETGG--RRFW--PMTVNPEKVEVKWS-KLTKEEIDQIWAEA----KHYYDKGEE 674 Query: 671 --LDVDIPEVCLKAKEEERQGTDTYQ---AWID 698 LD ++ E + + + + +++ Sbjct: 675 LYLDPELEEEMNAIQSKHTEESPYVGIIEEFLN 707 >gi|190344043|gb|ACE75820.1| hypothetical protein [Sorex araneus] Length = 611 Score = 48.0 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 21/140 (15%), Positives = 41/140 (29%), Gaps = 25/140 (17%) Query: 634 KPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTY 693 + ++ D L+ A G P EE Sbjct: 54 QKFSDNDK-LYLYLQLPAGPSA--------------GDKSSEPSTLSN--EEYMYA---- 92 Query: 694 QAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKR 753 WI + + + S+ +Y +Y E + +ST +++ IK Sbjct: 93 YKWIRNHLEEHTDTCLPKQSVYDAYRKYC--ESLACCRPLSTANFGKIIRE--IFPDIKA 148 Query: 754 EKIEKEWKSKRIIKGLKLKP 773 ++ +SK G++ K Sbjct: 149 RRLGGRGQSKYCYSGIRRKT 168 >gi|260945577|ref|XP_002617086.1| hypothetical protein CLUG_02530 [Clavispora lusitaniae ATCC 42720] gi|238848940|gb|EEQ38404.1| hypothetical protein CLUG_02530 [Clavispora lusitaniae ATCC 42720] Length = 399 Score = 48.0 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 50/327 (15%), Positives = 103/327 (31%), Gaps = 38/327 (11%) Query: 326 YTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRF 385 Y + + + + T + L + + + + +D + R Sbjct: 8 YVHEGGIKPYFAQ--QIQDTEIKIQTTTQNLRRLEAQRNKLNTKVRQLKD---ELRLLRA 62 Query: 386 WFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLD----SSSRFLGEQDGILDLETG 441 W + + + K + E I ++T D +D + S + + DL Sbjct: 63 WSTLEKWSKVM--GLKKVLVKVNPEGKYIVNVTKD-IDIKKLTPSLRVCLKSDSYDLHKI 119 Query: 442 QKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALL 495 K + + P + + +EV++ +G+A Sbjct: 120 LPNKVDPLVSLMMVEKVPDSTYDMVGGLDKQIKEI---KEVIELPVKHPELFESLGIA-- 174 Query: 496 GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIR 555 + + + G G+GK+ L + + + I S+++Q E + L Sbjct: 175 ----QPKGVILYGPPGTGKTLLARSVAH-HTDCKFIRVSGSELVQKYIGEGSRMVRELFV 229 Query: 556 LMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPN 611 + I +E D I +++++ +GGD R L ES + N Sbjct: 230 MAREHAPSIIFMDEVDSIGSSRVEGSSGGDSEVQRTMLELLNQLDGFESSKDIKIIMATN 289 Query: 612 KHLFVRNPDDAWWR--RY-IVIPFDKP 635 + + D A R R I F P Sbjct: 290 RLDIL---DPALLRPGRIDRKIEFPAP 313 >gi|2911547|emb|CAA75451.1| E1 protein [Human papillomavirus type 75] Length = 609 Score = 48.0 bits (112), Expect = 0.006, Method: Composition-based stats. Identities = 40/323 (12%), Positives = 91/323 (28%), Gaps = 40/323 (12%) Query: 333 WYKKDKNNVYIWSLTL--DKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTD 390 WYK ++ T + +++ + + FDLS+ + + Sbjct: 279 WYKGSMDSSVYAHGTYPDWIVNQTMLTHQAAAEAVQFDLSQMIQWAYDTDLTDEADIAYG 338 Query: 391 YRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKEL 450 Y + +++ A + +A + + G+ + Sbjct: 339 YAKMAESDSNARAWLAHNSQAKFVRE--------------CAQMVRHYRRGEMRDMSISE 384 Query: 451 YITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVG 510 +I EG E + + F+ + F L G K + G Sbjct: 385 WIHYRIEQVEGEG-HWSEIVKFIR--FQEINFI-LFLDAFKQFLHGKPKKSCLLI-YGPP 439 Query: 511 GSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISET--N 568 GKS + + + A K+ L L +I ++ + Sbjct: 440 DCGKSMFAMSLIRVLKGRVISFVNA------------KSQFWLSPLAECKIGLLDDATDP 487 Query: 569 ENDEINAAKIKQMTGGDCMTARLNYGNT-YSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627 I+ A ++ G+ ++ + P I N ++ + + R Sbjct: 488 CWQYID-AYLRNGIDGNIVSVDCKHKTPLQIRFPP---LLITSNYNIKDNDKYRYLYSRI 543 Query: 628 IVIPFDKPIANRDASFAQKLETK 650 ++ F ++ + L T Sbjct: 544 VIFEFKHKFPFKEDGSPEFLLTD 566 >gi|237724850|ref|ZP_04555331.1| conserved hypothetical protein [Bacteroides sp. D4] gi|229436588|gb|EEO46665.1| conserved hypothetical protein [Bacteroides dorei 5_1_36/D4] Length = 410 Score = 48.0 bits (112), Expect = 0.007, Method: Composition-based stats. Identities = 33/194 (17%), Positives = 59/194 (30%), Gaps = 26/194 (13%) Query: 468 EFLDLVSGYFESE-EV-MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF 525 LV F + E+ MDY L K + + +GKST +N +K F Sbjct: 102 HIRSLVEHIFGEQYELGMDYLQLLY---LKPTQKLPILLLVSEERNTGKSTFLNFLKALF 158 Query: 526 GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGD 585 N Q G ++++ E N ++ ++K ++ Sbjct: 159 QENVTFNTNEDFRSQFN-----------ADWAGKLMIVVDEVLLNRREDSERLKNLSTAH 207 Query: 586 CMTARLNYGNTYSESPASFTPFIVPNK---HLFVRNPDDAWWRRYIVIPFDKPIANRDAS 642 + Y E + N +++ + +W R + + D S Sbjct: 208 SYKMEAKGKDRY-EVQFFAKFVLCSNNENFPVYIEPEETRYWVRKV-----SRLERDDTS 261 Query: 643 FAQKLETKYTLEAK 656 F QKL Sbjct: 262 FLQKL-KDEIPAFL 274 >gi|269978256|ref|ZP_06185206.1| putative primase [Mobiluncus mulieris 28-1] gi|269933765|gb|EEZ90349.1| putative primase [Mobiluncus mulieris 28-1] Length = 146 Score = 48.0 bits (112), Expect = 0.007, Method: Composition-based stats. Identities = 17/128 (13%), Positives = 33/128 (25%), Gaps = 14/128 (10%) Query: 22 PLRLGDKRPQRLGKWEEQLLSSEKIDKLPA-------CGFGFVCGVGEQPLYAFDIDSK- 73 +R K P ++ S A G G + G L D+D Sbjct: 13 WVRRRGKVPLQVSGVNASSTSPGTWSSFDAVSASRVGDGLGIMLG---NGLGCLDLDHCI 69 Query: 74 --DEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGC 131 A + + L FR+ E ++ + G +++ Sbjct: 70 DAGGVVAPWALAAIAKTENIVFIEVSLSGDGLHVFRLCPEASG-RRFPQVGGGAIEVYSR 128 Query: 132 GQYFVAYN 139 ++ Sbjct: 129 SRFIACTG 136 >gi|260424986|ref|ZP_05733891.2| putative virulence-associated protein E [Dialister invisus DSM 15470] gi|260403825|gb|EEW97372.1| putative virulence-associated protein E [Dialister invisus DSM 15470] Length = 794 Score = 48.0 bits (112), Expect = 0.007, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 69/228 (30%), Gaps = 39/228 (17%) Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542 FT V + G K G G GK+T + I + + Sbjct: 497 RKSFTAAVARVMTPGCKYDYVPVFIGPQGIGKTTFLRTIGKGW-----HSDSLQSFHGKE 551 Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602 E + G I I E + +IKQ R YG P Sbjct: 552 AAEL---------IQGIWINEIGEMTGYSKSGDNEIKQFLSRCDDVYRQPYGRHTGRYPR 602 Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIVI-----PFDKPIANRDASFAQKLETKYTLEAKK 657 F N H F+++P + RR+ I P K I +L Sbjct: 603 KGVFFGTCNDHDFLKDPTGS--RRFWPIDVGVEPVTKSIWQDLPDEVDQL---------- 650 Query: 658 WFLKGVKAYISKG-LDVDIPEVCLKAKEEE-RQGTDT-----YQAWID 698 W + V + + + P + AK+E+ R D+ Q ++D Sbjct: 651 WA-EAVMRWKQHEPIYFEDPAIEAMAKQEQDRHREDSAKDGLIQDFLD 697 >gi|327189598|gb|EGE56750.1| virulence-associated E family protein [Rhizobium etli CNPAF512] Length = 401 Score = 48.0 bits (112), Expect = 0.007, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 47/149 (31%), Gaps = 15/149 (10%) Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542 + V G KA + G GS KST G ++ +A Sbjct: 145 RMFIISMVARIYQPGCKADHLPVLEGRQGSLKST----ACRVLGGEWFSDAMPEINSGKD 200 Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602 + L G ++ ++E + + A +K D R +YG P Sbjct: 201 ASQ---------HLRGKWLIEVAEMHAMNRAEATMLKSFISRDTERYRPSYGRAEVIEPR 251 Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIVIP 631 N+ ++R+P RR+ + Sbjct: 252 QCVFVGTTNQDTYLRDPTGG--RRFWPVK 278 >gi|296110912|ref|YP_003621293.1| prophage Lp4 protein 7, DNA replication [Leuconostoc kimchii IMSNU 11154] gi|295832443|gb|ADG40324.1| prophage Lp4 protein 7, DNA replication [Leuconostoc kimchii IMSNU 11154] Length = 289 Score = 48.0 bits (112), Expect = 0.007, Method: Composition-based stats. Identities = 20/192 (10%), Positives = 51/192 (26%), Gaps = 16/192 (8%) Query: 11 KQAIHNGFKLIPLRLGDKRPQR-LGKWEEQLLSSEKI-----DKLPACGFGFVCGVGEQP 64 + I GF + L G P + + + ++ G + + Sbjct: 34 HELIQQGFAVYLLSQGTNTPYKGSRGHLDATNNVRELTDMFLKYGANSNIGIIL--KDTG 91 Query: 65 LYAFDID-SKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQ 123 L DID + + + + P+ L F +G+ K + Sbjct: 92 LVVLDIDRHSVQTSGLNTLRQAGVSVSFDNEAVEVTPRGLHVFFKIPDGLDISKLKRNIG 151 Query: 124 GHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVP 183 L+++ K + Y + ++ + ++ + Sbjct: 152 TGLELITDK--ITVAPSV-KNGEPYK----HLGRSFSEANVMPDWLIDLSSNVATSGSTQ 204 Query: 184 LVKDKKSIIPSK 195 + K + + Sbjct: 205 TGRVPKYSVKER 216 >gi|66520165|ref|XP_623053.1| PREDICTED: 26S protease regulatory subunit 8 isoform 1 [Apis mellifera] Length = 405 Score = 48.0 bits (112), Expect = 0.007, Method: Composition-based stats. Identities = 47/303 (15%), Positives = 93/303 (30%), Gaps = 39/303 (12%) Query: 358 FLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSI 417 + V L EE + + +++ + + E + I Sbjct: 47 QRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKV--------HPEGKFVVDI 98 Query: 418 TS--DLLDSSSR-FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVS 474 D+ D + + ++ L K + + P E + Sbjct: 99 DKNIDINDVTPNSRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIK 158 Query: 475 GYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 +EV++ +G+A + + + G G+GK+ L + + Sbjct: 159 EI---KEVIELPVKHPELFDALGIA------QPKGVLLYGPPGTGKTLLARAVAH-HTEC 208 Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588 I S+++Q E + L + I +E D I +++I+ +GGD Sbjct: 209 TFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEV 268 Query: 589 AR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR--RY-IVIPFDKPIANRDA 641 R L E+ + + N+ + D A R R I F P N +A Sbjct: 269 QRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DPALLRPGRIDRKIEF--PPPNEEA 323 Query: 642 SFA 644 Sbjct: 324 RLD 326 >gi|113195484|ref|YP_717621.1| helicase/P143 [Clanis bilineata nucleopolyhedrosis virus] gi|94959025|gb|ABF47425.1| helicase/P143 [Clanis bilineata nucleopolyhedrosis virus] Length = 1241 Score = 48.0 bits (112), Expect = 0.007, Method: Composition-based stats. Identities = 27/156 (17%), Positives = 50/156 (32%), Gaps = 11/156 (7%) Query: 485 YFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP 543 +L + + + +++ G GSGKS+ L++ V +A + +R Sbjct: 927 LLMMHFDASLGIPSDYEKCCVYLNGEPGSGKSSNFELMEQIV---VVHKHDAENYTLSRK 983 Query: 544 PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPAS 603 I + NE E N + K A + + Sbjct: 984 ETDEME-------ANKLISQLYVINEMKECNDSFFKSTADSTKSNAVCRKYQGSQKYEGN 1036 Query: 604 FTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR 639 + IV NK L++ N D R+ ++ D Sbjct: 1037 YKLMIVNNKPLYISNYDKGVRNRFAIVYTDHVFEEN 1072 >gi|320333454|ref|YP_004170165.1| Bifunctional DNA primase/polymerase [Deinococcus maricopensis DSM 21211] gi|319754743|gb|ADV66500.1| Bifunctional DNA primase/polymerase [Deinococcus maricopensis DSM 21211] Length = 630 Score = 48.0 bits (112), Expect = 0.007, Method: Composition-based stats. Identities = 23/244 (9%), Positives = 51/244 (20%), Gaps = 44/244 (18%) Query: 17 GFKLIPLRLGDKRPQRLGKWEEQLL----SSEKIDKLP-----ACGFGFVCGVGEQPLYA 67 G L+ + G KRP W + L + E + G + G Sbjct: 16 GLVLVRINHGQKRP-TYSGWGKDSLGVIRTPEDAHRELTLDGREWNVGVLLGPSGLLSLD 74 Query: 68 FDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMN---------------KEG 112 D D + + + Q + +R+ + Sbjct: 75 IDRDDLAREEFAKHGLDLDAMIAVHP-HPTQAKGKKLWYRLPDDLDLPGVRAFQLPNPDN 133 Query: 113 IKKKKTTESTQGHLDILGCGQ------YFVAYNIHPKTK-----------KEYTWTTPPH 155 + ++ + A + Y W+ Sbjct: 134 VDPITGQPRPMTIFELRASPRDGSKSVQDAAPGSLHPEPEYRHGDAHPHPRYYIWSADGA 193 Query: 156 RFKVEDTPLLSEEDVEYL-FKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFL 214 ED P + ++ P ++ + + + + R Sbjct: 194 PTTREDIPEAPQALLDLYQVLRPSPDLAPRPTARRRSVIALPTRSGARANSSARYAAWAR 253 Query: 215 SCFG 218 Sbjct: 254 QHVN 257 >gi|242004405|ref|XP_002423081.1| rfx5, putative [Pediculus humanus corporis] gi|212506012|gb|EEB10343.1| rfx5, putative [Pediculus humanus corporis] Length = 962 Score = 48.0 bits (112), Expect = 0.007, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 27/75 (36%), Gaps = 5/75 (6%) Query: 696 WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755 WI + + + Y +Y E N K +ST +KQ G++ + Sbjct: 19 WIKTHLEEDSEISIPKQDVYDQYLKYCE---NVTMKPLSTADFGKVMKQ--VYPGVRPRR 73 Query: 756 IEKEWKSKRIIKGLK 770 + S+ G++ Sbjct: 74 LGTRGNSRYCYSGMR 88 >gi|307212064|gb|EFN87947.1| 26S protease regulatory subunit 8 [Harpegnathos saltator] Length = 405 Score = 48.0 bits (112), Expect = 0.007, Method: Composition-based stats. Identities = 45/301 (14%), Positives = 91/301 (30%), Gaps = 35/301 (11%) Query: 358 FLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSI 417 + V L EE + + +++ + + L+ + Sbjct: 47 QRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDLDKNIDIN- 105 Query: 418 TSDLLDSSSR-FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY 476 D + + ++ L K + + P E + Sbjct: 106 -----DVTPNSRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEI 160 Query: 477 FESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530 +EV++ +G+A + + + G G+GK+ L + + Sbjct: 161 ---KEVIELPVKHPELFDALGIA------QPKGVLLYGPPGTGKTLLARAVAH-HTECTF 210 Query: 531 INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR 590 I S+++Q E + L + I +E D I +++I+ +GGD R Sbjct: 211 IRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQR 270 Query: 591 ----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR--RY-IVIPFDKPIANRDASF 643 L E+ + + N+ + D A R R I F P N +A Sbjct: 271 TMLELLNQLDGFEATKNIKVIMATNRIDIL---DPALLRPGRIDRKIEF--PPPNEEARL 325 Query: 644 A 644 Sbjct: 326 D 326 >gi|323180722|gb|EFZ66267.1| ATPase family associated with various cellular activities family protein [Escherichia coli 1180] gi|332342321|gb|AEE55655.1| conserved hypothetical protein [Escherichia coli UMNK88] Length = 373 Score = 47.6 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 34/259 (13%), Positives = 85/259 (32%), Gaps = 39/259 (15%) Query: 468 EFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 + D + + +D + +G+ + R G G GK+ + + G Sbjct: 104 QIEDSLDQIILERKHIDRL-KTLGL------QPTRSAIFVGPPGVGKTLTASWLAQKLGV 156 Query: 528 QYVINAEASDIMQNRPPEAGKANPSLIRLM-GSRIVIISETN-----ENDEINAAKIKQM 581 + + + + +L G ++++ E + +D+ + ++K++ Sbjct: 157 PFYVLDLTAVMSSYLGKSGNNLRAALDFAKKGPCVLLLDEIDSIAKKRSDDSDVGELKRL 216 Query: 582 TGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY-IVIPFDKPIANRD 640 E P+S N + D A WRR+ +V+ F+KP + Sbjct: 217 VT--------VILQEVDEWPSSSLLLAATNFAELI---DPALWRRFDLVLNFEKPDSESI 265 Query: 641 ASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQ------GTD--T 692 ++ +W + ++ ++ + R+ +D Sbjct: 266 KEAIKRFSGPDYAIFARWIDLLAIMFKNESFSN-----IERSINKFRRSVALGISSDEEL 320 Query: 693 YQAWIDDCC-DIGENLWEE 710 ++I D ++ N +E Sbjct: 321 IGSFIKDGLSELDRNERKE 339 >gi|306818630|ref|ZP_07452353.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239] gi|304648803|gb|EFM46105.1| conserved hypothetical protein [Mobiluncus mulieris ATCC 35239] Length = 184 Score = 47.6 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 20/144 (13%), Positives = 36/144 (25%), Gaps = 23/144 (15%) Query: 15 HNGFKLIP---------LRLGDKRPQRLGKWEEQLLSSEKIDKLPA-------CGFGFVC 58 NG P +R K P ++ S A G G + Sbjct: 36 RNGLVGFPAEMRFRNQWVRRRGKVPLQVSGVNASSTSPGTWSSFDAVSASRVGDGLGIML 95 Query: 59 GVGEQPLYAFDIDSK---DEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKK 115 G L D+D A + + L FR+ E Sbjct: 96 G---NGLGCLDLDHCIDAGGVVAPWALAAIAKTENIVFIEVSLSGDGLHVFRLCPEASG- 151 Query: 116 KKTTESTQGHLDILGCGQYFVAYN 139 ++ + G +++ ++ Sbjct: 152 RRFPQVGGGVIEVYSRARFIACTG 175 >gi|228861672|ref|YP_002854692.1| helicase [Euproctis pseudoconspersa nucleopolyhedrovirus] gi|226425120|gb|ACO53532.1| helicase [Euproctis pseudoconspersa nucleopolyhedrovirus] Length = 1246 Score = 47.6 bits (111), Expect = 0.007, Method: Composition-based stats. Identities = 31/173 (17%), Positives = 65/173 (37%), Gaps = 17/173 (9%) Query: 469 FLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 F + + + + ++ +F +G + + + I+ G GSGKS+ ++ + Sbjct: 918 FRNFTNFNYINSLLIMHFDASLG---IPSDFEKCCIYCTGEPGSGKSSNGEMMGHLVVVH 974 Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM--TGGDC 586 + + + +AN + +L NE +E N A K + Sbjct: 975 KRDADSYTL--SKKETDEMEANKLISQLY--------VINELEECNDAFFKTTADSSKSN 1024 Query: 587 MTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR 639 + R G+ E+ +F I+ NK L+++N D R+ V+ Sbjct: 1025 VVCRKFQGSQTYEA--NFKLMIINNKPLYIKNYDKGVRNRFAVLYMPHEFEEN 1075 >gi|22549494|ref|NP_689267.1| putative helicase [Mamestra configurata NPV-B] gi|22476673|gb|AAM95079.1| putative helicase [Mamestra configurata NPV-B] Length = 1209 Score = 47.6 bits (111), Expect = 0.008, Method: Composition-based stats. Identities = 29/189 (15%), Positives = 59/189 (31%), Gaps = 25/189 (13%) Query: 495 LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLI 554 + + + +++ G GSGKS+ + + +A+ + ++ Sbjct: 904 IPTDYEKCCLYLNGKPGSGKSSFFAVFDHFVVVHKHDSAKYTLTKKDTNEMEAD------ 957 Query: 555 RLMGSRIVIISETNENDEINAAKIKQMT-GGDCMTARLNYGNTYSESPASFTPFIVPNKH 613 I + NE + + K T Y + + +F IV NK Sbjct: 958 ----KMISQLYVINEMKVCDDSFFKSTADSTKSNTVCRKYEGSQ-KYEGNFKLMIVNNKP 1012 Query: 614 LFVRNPDDAWWRRYIVIPFDKPIAN------------RDASFA-QKLETKYTLEAKKWFL 660 L + + D R+ VI D ++ +F +K + + FL Sbjct: 1013 LHISDYDKGVRNRFAVIYTDHLFEENMPFNGSIYWHIKNKTFPMEKSYIDELAKPVRLFL 1072 Query: 661 KGVKAYISK 669 + Y Sbjct: 1073 SHILMYKRN 1081 >gi|215401317|ref|YP_002332621.1| helicase [Helicoverpa armigera multiple nucleopolyhedrovirus] gi|198448817|gb|ACH88607.1| helicase [Helicoverpa armigera multiple nucleopolyhedrovirus] Length = 1209 Score = 47.6 bits (111), Expect = 0.008, Method: Composition-based stats. Identities = 29/189 (15%), Positives = 59/189 (31%), Gaps = 25/189 (13%) Query: 495 LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLI 554 + + + +++ G GSGKS+ + + +A+ + ++ Sbjct: 904 IPTDYEKCCLYLNGKPGSGKSSFFAVFDHFVVVHKHDSAKYTLTKKDTNEMEAD------ 957 Query: 555 RLMGSRIVIISETNENDEINAAKIKQMT-GGDCMTARLNYGNTYSESPASFTPFIVPNKH 613 I + NE + + K T Y + + +F IV NK Sbjct: 958 ----KMISQLYVINEMKVCDDSFFKSTADSTKSNTVCRKYEGSQ-KYEGNFKLMIVNNKP 1012 Query: 614 LFVRNPDDAWWRRYIVIPFDKPIAN------------RDASFA-QKLETKYTLEAKKWFL 660 L + + D R+ VI D ++ +F +K + + FL Sbjct: 1013 LHISDYDKGVRNRFAVIYTDHLFEENMPFNGSIYWHIKNKTFPMEKSYIDELAKPVRLFL 1072 Query: 661 KGVKAYISK 669 + Y Sbjct: 1073 SHILMYKRN 1081 >gi|226467155|emb|CAX76058.1| Tat-binding protein 10 [Schistosoma japonicum] Length = 398 Score = 47.6 bits (111), Expect = 0.009, Method: Composition-based stats. Identities = 54/342 (15%), Positives = 105/342 (30%), Gaps = 50/342 (14%) Query: 336 KDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNS----KSPRFWFNTDY 391 K + +I++ + + + V L EE + + + + Sbjct: 19 KIDEHQFIYTEKVLNLRRLEAQ-RNELNAKVRMLREELQLLQEQGSFVGEVIKAMDKKKV 77 Query: 392 RRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELY 451 + E +++E I L S S L K+ P+K Sbjct: 78 LVKVQPEGKYVVDIDKNIEMSQISPNCRVALRSDSYIL------------HKILPSKVDP 125 Query: 452 ITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIH 505 + V + L E +EV++ +G+A + + Sbjct: 126 LVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFDALGIA------QPKGVL 179 Query: 506 IRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIIS 565 + G G+GK+ L + + I S+++Q E + L + I Sbjct: 180 LYGPPGTGKTLLARAVAH-HTECTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSII 238 Query: 566 ETNENDEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDD 621 +E D I + +++ TGGD R L E + + N+ + D Sbjct: 239 FMDEVDSIGSTRLESGTGGDSEVQRTMLELLNQLDGFEPKQNIKVIMATNRIDIL---DS 295 Query: 622 AWWR--RY-IVIPFDKP----------IANRDASFAQKLETK 650 A R R I F P I +R + + ++ + Sbjct: 296 ALLRPGRIDRKIEFPAPNEEARLDILRIHSRKMNLTRDIDLR 337 >gi|332703645|ref|ZP_08423733.1| prophage antirepressor [Desulfovibrio africanus str. Walvis Bay] gi|332553794|gb|EGJ50838.1| prophage antirepressor [Desulfovibrio africanus str. Walvis Bay] Length = 248 Score = 47.6 bits (111), Expect = 0.009, Method: Composition-based stats. Identities = 13/77 (16%), Positives = 34/77 (44%), Gaps = 5/77 (6%) Query: 696 WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755 +++ CC +G + E ++L +Y E +S +L++ GG++ + Sbjct: 166 FLERCCHLGPHFSESKNALYDAYCLLCSTETET---PLSRELFFRDLRRAC--GGLRDVR 220 Query: 756 IEKEWKSKRIIKGLKLK 772 + + ++G+ L+ Sbjct: 221 PRVGRERPKRLRGVGLR 237 >gi|227431840|ref|ZP_03913864.1| possible bifunctional DNA primase/polymerase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227352382|gb|EEJ42584.1| possible bifunctional DNA primase/polymerase [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 295 Score = 47.6 bits (111), Expect = 0.009, Method: Composition-based stats. Identities = 29/255 (11%), Positives = 68/255 (26%), Gaps = 19/255 (7%) Query: 12 QAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLP--------ACGFGFVCGVGEQ 63 + + G + ++ P + L S I +L G + Sbjct: 35 ELVEQGLSVYLMQPKTSIPYKGS--RGHLSSVNDIKELKRLIEAHGDDSNVGISL--VDT 90 Query: 64 PLYAFDIDSKDEK---TANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTE 120 L DID A+ K ++ + I + + K G +K Sbjct: 91 GLVVLDIDRHTPNKNGLASLKKAGITPNFDDEVIEKTPRNGFHIFYYIPK-GFDMEKINH 149 Query: 121 STQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEI 180 + ++I+ + VA + ++ F + + + +E + Sbjct: 150 NPLNGVEIITD-KITVAPSFKTIDGNPVSYEHFGKDFIHANL--MPDWLIELVSNVATGG 206 Query: 181 TVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHET 240 + K + + N R A N + +V ++ + Sbjct: 207 NTQSGRVPKYSVKERWEMVLNGFSEGERNNQAVSVSGYLLRINVDPNIAYEIVKLINSRS 266 Query: 241 RGSSKGKEIARRWSK 255 +E+ + Sbjct: 267 VVPLPDRELFTTFKS 281 >gi|116326160|ref|YP_803486.1| helicase [Anticarsia gemmatalis nucleopolyhedrovirus] gi|112180898|gb|ABI13875.1| helicase [Anticarsia gemmatalis nucleopolyhedrovirus] Length = 1221 Score = 47.6 bits (111), Expect = 0.009, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 57/153 (37%), Gaps = 14/153 (9%) Query: 486 FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545 G ++ N ++ +++ G SGKST L++ + D + Sbjct: 894 LMHFAGGLVVPTNYGRKAVYLPGEPMSGKSTFFELLESL------VLMHKFDDETHTGDS 947 Query: 546 AGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN--TYSESPAS 603 ++ + +L + NE + + + K+ D + + + A+ Sbjct: 948 KETSDKEVSKLN----SQLYTINELKKCSESFFKK--NADSINSDSKSRKYQGLLKYEAN 1001 Query: 604 FTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI 636 + IV N L+V + DDA R++++ D Sbjct: 1002 YKMLIVNNNPLYVDDYDDAVQDRFLIVYTDHKF 1034 >gi|45120533|gb|AAS55052.1| helicase [Anticarsia gemmatalis MNPV] Length = 1221 Score = 47.6 bits (111), Expect = 0.009, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 57/153 (37%), Gaps = 14/153 (9%) Query: 486 FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545 G ++ N ++ +++ G SGKST L++ + D + Sbjct: 894 LMHFAGGLVVPTNYGRKAVYLPGEPMSGKSTFFELLESL------VLMHKFDDETHTGDS 947 Query: 546 AGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN--TYSESPAS 603 ++ + +L + NE + + + K+ D + + + A+ Sbjct: 948 KETSDKEVSKLN----SQLYTINELKKCSESFFKK--NADSINSDSKSRKYQGLLKYEAN 1001 Query: 604 FTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI 636 + IV N L+V + DDA R++++ D Sbjct: 1002 YKMLIVNNNPLYVDDYDDAVQDRFLIVYTDHKF 1034 >gi|315503064|ref|YP_004081951.1| bifunctional DNA primase/polymerase [Micromonospora sp. L5] gi|315409683|gb|ADU07800.1| Bifunctional DNA primase/polymerase [Micromonospora sp. L5] Length = 691 Score = 47.6 bits (111), Expect = 0.009, Method: Composition-based stats. Identities = 32/228 (14%), Positives = 64/228 (28%), Gaps = 28/228 (12%) Query: 6 WKEQAKQAIHNGFKLIPLRLGD---KRPQRLGKWEEQLLSSEKIDK----LPACGFGFVC 58 + + A+ + N +IP + K P+ L + ++ + P G G Sbjct: 9 YGKAARIYLGNWPSVIPTDINGEIGKVPRGLTGSSRINPTPNQVRELVRDYPDAGTGLPL 68 Query: 59 GVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTP--IVRIGQKPK--ILIPFRMNKEGIK 114 + D D++ A T L P + + + FR+ Sbjct: 69 --PSDVVGVDVDDYGDKRGAETLGKLEAELGPLPVGPMSTARGYGKSGIRFFRVPAGFST 126 Query: 115 KK-----KTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPH-----RFKVEDTPL 164 + K + + V +I+PKT +Y W + D P Sbjct: 127 ENLPNVGKDVDLIRHGW--RWAR---VWPSINPKTGTQYRWFGASGQTLSSPPRPTDFPE 181 Query: 165 LSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITA 212 L E + +L T + + + + + Sbjct: 182 LPEAWLAWLESRRAANTADATELGEPEAFNVDAYTWLVELLADDQAAT 229 >gi|332027618|gb|EGI67688.1| DNA-binding protein RFX7 [Acromyrmex echinatior] Length = 1223 Score = 47.2 bits (110), Expect = 0.010, Method: Composition-based stats. Identities = 11/83 (13%), Positives = 28/83 (33%), Gaps = 5/83 (6%) Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754 WI + ++ + Y+ Y + K +ST +KQ ++ Sbjct: 180 MWIKTHLEEDPDVSLPKQEVYDEYNMYCIRNSM---KPLSTADFGKVMKQ--VYPRVRPR 234 Query: 755 KIEKEWKSKRIIKGLKLKPAFES 777 ++ S+ G++ + + Sbjct: 235 RLGTRGNSRYCYAGMRKRIKLDP 257 >gi|123238018|ref|XP_001287285.1| hypothetical protein [Trichomonas vaginalis G3] gi|121854433|gb|EAX74355.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 181 Score = 47.2 bits (110), Expect = 0.010, Method: Composition-based stats. Identities = 27/177 (15%), Positives = 54/177 (30%), Gaps = 15/177 (8%) Query: 571 DEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVI 630 +N+ +K + Y + + + N D RRY+V+ Sbjct: 3 KVLNSDALKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESSD---RRYVVV 59 Query: 631 PFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQG 689 +D + L T + + IP + ++ + Sbjct: 60 R-TSDSHMQDTEYFDALSECLTSDFYNHLFSYFMTLDISKFNPRQIPHT--EERQTLLEA 116 Query: 690 TDTYQA-WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK 745 + +ID+ + + + SL SY +Y ++ Y S RT N+K Sbjct: 117 NKSVYELFIDE----TDFVSLDERSLYDSYKQYCQE---YGYMAASKRTFLANVKSL 166 >gi|167620889|ref|ZP_02389520.1| DNA primase [Burkholderia thailandensis Bt4] Length = 205 Score = 47.2 bits (110), Expect = 0.010, Method: Composition-based stats. Identities = 12/66 (18%), Positives = 22/66 (33%), Gaps = 2/66 (3%) Query: 212 AFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDT 271 S D W MA+ E +G + W + +Y+ ++ W + Sbjct: 5 ERASVALGYVPADDRDTWRQAGMALKAEF--GEEGFALWNEWGQGAQSYNAKDARDVWKS 62 Query: 272 FDFEEI 277 F +I Sbjct: 63 FKGGKI 68 >gi|225719952|gb|ACO15809.1| regulatory factor X, 5, isoform 2 (predicted) [Dasypus novemcinctus] Length = 612 Score = 47.2 bits (110), Expect = 0.010, Method: Composition-based stats. Identities = 17/104 (16%), Positives = 34/104 (32%), Gaps = 10/104 (9%) Query: 670 GLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYD 729 G P EE WI + + + S+ +Y +Y E Sbjct: 75 GDKGSEPSTLSN--EEYMYA----YRWIRNHLEKHTDTCLPKQSVYDAYRKYC--ESLAC 126 Query: 730 RKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773 + +ST +++ IK ++ +S+ G++ K Sbjct: 127 CRPLSTANFGKIIRE--IFPDIKARRLGGRGQSQYCYSGIRRKT 168 >gi|322800911|gb|EFZ21743.1| hypothetical protein SINV_03788 [Solenopsis invicta] Length = 1243 Score = 47.2 bits (110), Expect = 0.010, Method: Composition-based stats. Identities = 11/83 (13%), Positives = 28/83 (33%), Gaps = 5/83 (6%) Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754 WI + ++ + Y+ Y + K +ST +KQ ++ Sbjct: 190 MWIKTHLEEDPDVSLPKQEVYDEYNMYCTRNSM---KPLSTADFGKVMKQ--VYPRVRPR 244 Query: 755 KIEKEWKSKRIIKGLKLKPAFES 777 ++ S+ G++ + + Sbjct: 245 RLGTRGNSRYCYAGMRKRIKLDP 267 >gi|123173333|ref|XP_001279784.1| hypothetical protein [Trichomonas vaginalis G3] gi|121830245|gb|EAX66854.1| hypothetical protein TVAG_258820 [Trichomonas vaginalis G3] Length = 213 Score = 47.2 bits (110), Expect = 0.010, Method: Composition-based stats. Identities = 21/132 (15%), Positives = 41/132 (31%), Gaps = 12/132 (9%) Query: 469 FLDLVSGYF--ESEEVMDYFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLM-NLIKYA 524 +LD V +E V +Y L K + + I G G+GK+T +++ Sbjct: 87 WLDHVKEIICNGNERVYEYILCWFANILQHPSAKNETALIIIGKQGTGKNTFFTDILCKL 146 Query: 525 F-GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTG 583 G +I N S+ + + + +N+ +K + Sbjct: 147 LEGYSNPNMTNLENICGKF-------NSSIENMKLIVCNELQSIDTTKVLNSDALKSLIT 199 Query: 584 GDCMTARLNYGN 595 Y + Sbjct: 200 DKVGVVERKYKD 211 >gi|307197642|gb|EFN78821.1| Regulatory factor X domain-containing protein 2 [Harpegnathos saltator] Length = 1296 Score = 47.2 bits (110), Expect = 0.010, Method: Composition-based stats. Identities = 11/83 (13%), Positives = 28/83 (33%), Gaps = 5/83 (6%) Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754 WI + ++ + Y+ Y + K +ST +KQ ++ Sbjct: 195 MWIKTHLEEDPDVSLPKQEVYDEYNVYCIRNSM---KPLSTADFGKVMKQ--VYPRVRPR 249 Query: 755 KIEKEWKSKRIIKGLKLKPAFES 777 ++ S+ G++ + + Sbjct: 250 RLGTRGNSRYCYAGMRKRIKLDP 272 >gi|123238307|ref|XP_001287346.1| hypothetical protein [Trichomonas vaginalis G3] gi|121854607|gb|EAX74416.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 173 Score = 47.2 bits (110), Expect = 0.010, Method: Composition-based stats. Identities = 26/170 (15%), Positives = 51/170 (30%), Gaps = 15/170 (8%) Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637 +K + Y + + + N D RRY+V+ Sbjct: 3 LKSLITDKVGVVERKYKDQRVCENVANFIMVSNNSVPMKLESSD---RRYVVVR-TSEAH 58 Query: 638 NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQA- 695 +D + L T + + IP + ++ + + Sbjct: 59 MQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIP--HTEERQTLLEANKSVYEL 116 Query: 696 WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK 745 +ID+ + + + SL SY +Y ++ Y S RT N+K Sbjct: 117 FIDE----TDFVSLDERSLYDSYKQYCQE---YGYMTASKRTFLANVKSL 159 >gi|67967906|dbj|BAE00435.1| unnamed protein product [Macaca fascicularis] Length = 620 Score = 47.2 bits (110), Expect = 0.010, Method: Composition-based stats. Identities = 18/104 (17%), Positives = 34/104 (32%), Gaps = 10/104 (9%) Query: 670 GLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYD 729 G P EE WI + + + S+ +Y +Y E Sbjct: 75 GDKSSEPSTLGN--EEYMYA----YRWIRNHLEEHTDTCLPKQSVYDAYRKYC--ESLAC 126 Query: 730 RKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773 + +ST +++ IK ++ +SK G++ K Sbjct: 127 CRPLSTANFGKIIRE--IFPDIKARRLGGRGQSKYCYSGIRRKT 168 >gi|157137247|ref|XP_001663955.1| rfx5 [Aedes aegypti] gi|108869758|gb|EAT33983.1| rfx5 [Aedes aegypti] Length = 415 Score = 47.2 bits (110), Expect = 0.011, Method: Composition-based stats. Identities = 14/84 (16%), Positives = 29/84 (34%), Gaps = 5/84 (5%) Query: 687 RQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746 R + W+ + N+ + Y+ + E D K +ST +KQ Sbjct: 230 RSEINHTINWVRSHLEHDPNVSIPKQEVYDDYTAFCE---RIDIKPLSTADFGKVMKQ-- 284 Query: 747 FIGGIKREKIEKEWKSKRIIKGLK 770 GI+ ++ S+ ++ Sbjct: 285 VFPGIRPRRLGTRGHSRYCYAAMR 308 >gi|37651330|ref|NP_932697.1| helicase [Choristoneura fumiferana DEF MNPV] gi|37499239|gb|AAQ91638.1| helicase [Choristoneura fumiferana DEF MNPV] Length = 1221 Score = 47.2 bits (110), Expect = 0.011, Method: Composition-based stats. Identities = 26/155 (16%), Positives = 57/155 (36%), Gaps = 15/155 (9%) Query: 485 YFTRCVGMALL-GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP 543 + L+ N ++ +++ G SGKST L++ + D + Sbjct: 892 FMLMHFAGGLVAPTNYGRKAVYLPGEPMSGKSTFFELLESL------VLMHKFDDETHTG 945 Query: 544 PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGN--TYSESP 601 ++ + +L + NE + + + K+ D + + + Sbjct: 946 DSKETSDKEVSKLN----SQLYTINELKKCSESFFKK--NADSINSDSKSRKYQGLLKYE 999 Query: 602 ASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI 636 A++ IV N L+V + DDA R++++ D Sbjct: 1000 ANYKMLIVNNNPLYVDDYDDAVQDRFLIVYTDHKF 1034 >gi|20069972|ref|NP_613176.1| helicase [Mamestra configurata NPV-A] gi|20043366|gb|AAM09201.1| helicase [Mamestra configurata NPV-A] gi|33331804|gb|AAQ11112.1| putative helicase [Mamestra configurata NPV-A] Length = 1212 Score = 47.2 bits (110), Expect = 0.011, Method: Composition-based stats. Identities = 29/189 (15%), Positives = 59/189 (31%), Gaps = 25/189 (13%) Query: 495 LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLI 554 + + + +++ G GSGKS+ + + +A+ + ++ Sbjct: 907 IPTDYEKCCLYLNGKPGSGKSSFFAVFDHFVVVHKHDSAKYTLTKKDTNEMEAD------ 960 Query: 555 RLMGSRIVIISETNENDEINAAKIKQMT-GGDCMTARLNYGNTYSESPASFTPFIVPNKH 613 I + NE + + K T Y + + +F IV NK Sbjct: 961 ----KMISQLYVINEMKVCDDSFFKSTADSTKSNTVCRKYEGSQ-KYEGNFKLLIVNNKP 1015 Query: 614 LFVRNPDDAWWRRYIVIPFDKPIAN------------RDASFA-QKLETKYTLEAKKWFL 660 L + + D R+ VI D ++ +F +K + + FL Sbjct: 1016 LHISDYDKGVRNRFAVIYTDHLFEENMPFNGSIYWHIKNKTFPMEKSYIDELAKPVRLFL 1075 Query: 661 KGVKAYISK 669 + Y Sbjct: 1076 SHILMYKRN 1084 >gi|226467157|emb|CAX76059.1| Tat-binding protein 10 [Schistosoma japonicum] gi|226467161|emb|CAX76061.1| Tat-binding protein 10 [Schistosoma japonicum] gi|226467163|emb|CAX76062.1| Tat-binding protein 10 [Schistosoma japonicum] Length = 430 Score = 47.2 bits (110), Expect = 0.011, Method: Composition-based stats. Identities = 54/342 (15%), Positives = 105/342 (30%), Gaps = 50/342 (14%) Query: 336 KDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNS----KSPRFWFNTDY 391 K + +I++ + + + V L EE + + + + Sbjct: 51 KIDEHQFIYTEKVLNLRRLEAQ-RNELNAKVRMLREELQLLQEQGSFVGEVIKAMDKKKV 109 Query: 392 RRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELY 451 + E +++E I L S S L K+ P+K Sbjct: 110 LVKVQPEGKYVVDIDKNIEMSQISPNCRVALRSDSYIL------------HKILPSKVDP 157 Query: 452 ITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIH 505 + V + L E +EV++ +G+A + + Sbjct: 158 LVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFDALGIA------QPKGVL 211 Query: 506 IRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIIS 565 + G G+GK+ L + + I S+++Q E + L + I Sbjct: 212 LYGPPGTGKTLLARAVAH-HTECTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSII 270 Query: 566 ETNENDEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDD 621 +E D I + +++ TGGD R L E + + N+ + D Sbjct: 271 FMDEVDSIGSTRLESGTGGDSEVQRTMLELLNQLDGFEPKQNIKVIMATNRIDIL---DS 327 Query: 622 AWWR--RY-IVIPFDKP----------IANRDASFAQKLETK 650 A R R I F P I +R + + ++ + Sbjct: 328 ALLRPGRIDRKIEFPAPNEEARLDILRIHSRKMNLTRDIDLR 369 >gi|123210772|ref|XP_001285251.1| hypothetical protein [Trichomonas vaginalis G3] gi|121848380|gb|EAX72321.1| hypothetical protein TVAG_553690 [Trichomonas vaginalis G3] Length = 213 Score = 47.2 bits (110), Expect = 0.011, Method: Composition-based stats. Identities = 21/132 (15%), Positives = 41/132 (31%), Gaps = 12/132 (9%) Query: 469 FLDLVSGYF--ESEEVMDYFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLM-NLIKYA 524 +LD V +E V +Y L K + + I G G+GK+T +++ Sbjct: 87 WLDHVKEIICNGNERVYEYILCWFANILQHPSAKNETALIIIGKQGTGKNTFFTDILCKL 146 Query: 525 F-GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTG 583 G +I N S+ + + + +N+ +K + Sbjct: 147 LEGYSNPNMTNLENICGKF-------NSSIENMKLIVCNELQSIDTTKVLNSDALKSLIT 199 Query: 584 GDCMTARLNYGN 595 Y + Sbjct: 200 DKVGVVERKYKD 211 >gi|157786109|gb|ABV74214.1| helicase [Samia cynthia nucleopolyhedrovirus] Length = 1212 Score = 47.2 bits (110), Expect = 0.011, Method: Composition-based stats. Identities = 24/152 (15%), Positives = 54/152 (35%), Gaps = 11/152 (7%) Query: 486 FTRCVGMALLGGNKA-QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544 +L ++ +++ GV SGKST L+ + + D + Sbjct: 884 MLMHFAASLSAPTDYGRKAVYLPGVPLSGKSTFFELLDFL------VLMHKFDDETHTGE 937 Query: 545 EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604 ++ + +L + NE + + + K+ + + + A++ Sbjct: 938 SRETSDKEVSKLN----SQLYTINELKKCSESFFKKHADSNKCDTKSRKYQGLLKYEANY 993 Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI 636 IV N L+V + DD R++++ D Sbjct: 994 KMLIVNNNPLYVDDYDDGVQNRFLIVYTDHKF 1025 >gi|332220264|ref|XP_003259277.1| PREDICTED: DNA-binding protein RFX5 isoform 1 [Nomascus leucogenys] Length = 616 Score = 47.2 bits (110), Expect = 0.011, Method: Composition-based stats. Identities = 16/90 (17%), Positives = 32/90 (35%), Gaps = 8/90 (8%) Query: 684 EEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLK 743 EE WI + + + S+ +Y +Y E + +ST ++ Sbjct: 87 EEYMYA----YRWIRNHLEEHTDTCLPKQSVYDAYRKYC--ESLACCRPLSTANFGKIIR 140 Query: 744 QKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773 + IK ++ +SK G++ K Sbjct: 141 E--IFPDIKARRLGGRGQSKYCYSGIRRKT 168 >gi|227872575|ref|ZP_03990911.1| virulence-associated protein E [Oribacterium sinus F0268] gi|227841576|gb|EEJ51870.1| virulence-associated protein E [Oribacterium sinus F0268] Length = 819 Score = 47.2 bits (110), Expect = 0.011, Method: Composition-based stats. Identities = 105/750 (14%), Positives = 206/750 (27%), Gaps = 106/750 (14%) Query: 5 QWKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCG----- 59 QWKE K+ N F + + + + E + S+ GFV G Sbjct: 20 QWKE--KEYSWNAFTALFVTPKEG----TESFSEYMALSKDKQDELKDVGGFVGGTLKGA 73 Query: 60 ------VGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQK-----PKILIPFRM 108 V + L D+D+ + + E L ++ +K P++ I F + Sbjct: 74 TRKATDVVSRELVTLDLDNIPGTDLDGILEAVEKLGYAALLYSTRKHTKDKPRLRILFPL 133 Query: 109 NKEGI--KKKKTTESTQGHLDI-------LGCGQYFVAYNIHPKTKKEYTWTTPPHRFKV 159 + + + + I + +I + T K Sbjct: 134 AEPSSVEEYEPLARMLASQIGIDYADPTTFEANRLMYFPSICKGADYLFKVFTGESVKKE 193 Query: 160 EDTPLLSEED--VEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCF 217 E L + E+ + + + K+ K + + Sbjct: 194 EVLGLYHDWQNVSEWPTCKTENLLIRKHIAKQGNPLEKNGLIGAFCKTYDIPSAIAKFLK 253 Query: 218 GEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEI 277 G D W A T G+ + +S + + FD I Sbjct: 254 GIYVPTDKADRWT---YADGSTTGGAVLYDDDTFLYSHHATDPCSGIL---VNAFDLVRI 307 Query: 278 GDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKD 337 S + K + SD+ KA+ + D Sbjct: 308 HKFGDLDDGVRSTMLESNRPSFKEMEKLVMSDSEAMKCLH-----EERILEAQKAFEEDD 362 Query: 338 KNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVE 397 + ++K++ ++ K V + + + N + + Sbjct: 363 SEHSK---GEIEKVSKGEVDTEWMNKLLVNEEGRVLPTIDN---FKKVMENDHNLKGKIY 416 Query: 398 ENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILD-LETGQKVKPTKELYITKST 456 +S S + D +G+ LE K+ K+ S Sbjct: 417 SDSFTDKKFCGGAVPWDKSGNHEWTDED------DNGLFWYLELFYKIHHEKKANAALSL 470 Query: 457 GTPFVEGEPSQEFLDLVSGYFESEEVMD-YFTRCVGM--------------------ALL 495 ++L +S ++++ ++ F +G AL Sbjct: 471 VFKDHRINVVADYLKALS--WDNKSRVETLFIDYLGAEDCKYTREITRKTLEACVIRALK 528 Query: 496 GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIR 555 G K + + G G GKST++ + +A ++ Sbjct: 529 FGAKYDNMLILVGAQGIGKSTILKKLGK-----------EWFTDSLVKFSGKEAEDTIA- 576 Query: 556 LMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLF 615 G IV +SE + + +IKQ R +Y E P F N+ F Sbjct: 577 --GKWIVEVSELTALNRQESTEIKQFLSTRSSNYRESYARRSKEHPRKCVFFGTSNEDEF 634 Query: 616 VRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKG-------VKAYIS 668 +++ RR+ +P D +D + L + + G Sbjct: 635 LKDTTG--NRRFYPLPVDADRIKKDIW--KDLTEQEVDQIWAEVCFGVSLCEGNYDELEY 690 Query: 669 KGLDVDIPEVCLKAKEEERQGTDTYQAWID 698 + L + E + EE D Y++ ++ Sbjct: 691 QVLSKESSETLARMHEEY-SEKDPYESLVE 719 >gi|197312891|gb|ACH63226.1| putative 26S proteasome AAA-ATPase subunit RPT6a [Rheum australe] Length = 395 Score = 47.2 bits (110), Expect = 0.011, Method: Composition-based stats. Identities = 49/335 (14%), Positives = 97/335 (28%), Gaps = 39/335 (11%) Query: 345 SLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQ--------NV 396 I + +++ V +L N + R Q V Sbjct: 26 EGLRQYYLQRIHELQLQLRQKVNNLQRLEAQRNDLNSRVRALKEELQLLQEPGSYVGEVV 85 Query: 397 EENSKAKSTAQSLEAGSIFSITSDLLD----SSSRFLGEQDGILDLETGQKVKPTKELYI 452 + K+K + G +D + S + ++ L K + + Sbjct: 86 KVMGKSKVLVKVHPEGKYVVDIDKSIDITKITPSTRVALKNDSYVLHLVLPSKVDPLVNL 145 Query: 453 TKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHI 506 K P + + +EV++ +G+A + + + Sbjct: 146 MKVEKVPDSTYDMIGGLDQQIKEI---KEVIELPIKHPELFESLGIA------QPKGVLL 196 Query: 507 RGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISE 566 G G+GK+ L + + + I S+++Q E + L + I Sbjct: 197 YGPPGTGKTLLARAVAH-HTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIF 255 Query: 567 TNENDEINAAKIKQMTGGDCMTARL-----NYGNTYSESPASFTPFIVPNKHLFVRNPDD 621 +E D I +A+++ +G R E+ + N+ + D Sbjct: 256 MDEIDSIGSARMESGSGNGDSEVRRTMLELLNQLDGFEASNKIKVLMATNRIDIL---DQ 312 Query: 622 AWWR--RY-IVIPFDKPIANRDASFAQKLETKYTL 653 A R R I F P A+ + K L Sbjct: 313 ALLRPGRIDRKIEFPNPNADSRGDILKIHSRKMNL 347 >gi|294486130|gb|ADE87946.1| putative primase [Escherichia phage vB_EcoM_ECO1230-10] Length = 767 Score = 47.2 bits (110), Expect = 0.012, Method: Composition-based stats. Identities = 17/77 (22%), Positives = 28/77 (36%), Gaps = 5/77 (6%) Query: 199 NNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGS 258 N + T +EI LS + W+ + MAV E G + WS+Q Sbjct: 4 QQNYKDLTEQEIAEALSYIDAG---CDRETWVRMAMAVKSELGDG--GFTVWNDWSRQSD 58 Query: 259 TYDEENFNYKWDTFDFE 275 Y+ ++ W + Sbjct: 59 KYNSKDARDTWKSVKRH 75 >gi|322827263|gb|EFZ31520.1| hypothetical protein TCSYLVIO_2169 [Trypanosoma cruzi] Length = 623 Score = 47.2 bits (110), Expect = 0.012, Method: Composition-based stats. Identities = 12/121 (9%), Positives = 26/121 (21%), Gaps = 12/121 (9%) Query: 178 QEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVH 237 + + ++ +L E G WI + + Sbjct: 470 EGADKDATGAANGASKIPPILLPLTEREAVENVSMWLRTGTREVDVGDWRSWIKLGINTF 529 Query: 238 HET-----------RGSSKGKEIARRWSKQGS-TYDEENFNYKWDTFDFEEIGDTAKKRS 285 + + SK+ Y KW +FD +++ Sbjct: 530 RIAYHFRDAQTLRRPAMEELLDAWVEASKKCPMKYRPGVCEAKWSSFDIDKLCKLQDNDW 589 Query: 286 T 286 Sbjct: 590 W 590 >gi|1709799|sp|P54814|PRS8_MANSE RecName: Full=26S protease regulatory subunit 8; AltName: Full=Protein 18-56 gi|1167963|gb|AAC46996.1| 18-56 protein [Manduca sexta] Length = 402 Score = 47.2 bits (110), Expect = 0.012, Method: Composition-based stats. Identities = 44/300 (14%), Positives = 90/300 (30%), Gaps = 33/300 (11%) Query: 358 FLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSI 417 + V L EE + + +++ + + L+ + Sbjct: 44 QRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDLDKNVDIND 103 Query: 418 TSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF 477 + + ++ L K + + P E + Sbjct: 104 VTANC-----RVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEI- 157 Query: 478 ESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVI 531 +EV++ +G+A + + + G G+GK+ L + + I Sbjct: 158 --KEVIELPVKHPELFDALGIA------QPKGVLLYGPPGTGKTLLARAVAH-HTECTFI 208 Query: 532 NAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR- 590 S+++Q E + L + I +E D I +++I+ +GGD R Sbjct: 209 RVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRT 268 Query: 591 ---LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR--RY-IVIPFDKPIANRDASFA 644 L E+ + + N+ + D A R R I F P N +A Sbjct: 269 MLELLNQLDGFEATKNIKVIMATNRIDIL---DPALLRPGRIDRKIEF--PPPNEEARLD 323 >gi|312071353|ref|XP_003138569.1| 26S protease regulatory subunit 8 [Loa loa] gi|307766267|gb|EFO25501.1| 26S protease regulatory subunit 8 [Loa loa] Length = 409 Score = 47.2 bits (110), Expect = 0.012, Method: Composition-based stats. Identities = 54/337 (16%), Positives = 99/337 (29%), Gaps = 47/337 (13%) Query: 354 SIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGS 413 S + S+K E+ + + N + + Q E GS Sbjct: 15 SKSSEEQSLKRYYKTKIEDMQQRVAEKTQNLRRLHAQRNELNTKVRMLKEELQQLHEQGS 74 Query: 414 IFSITSDLLDSSSRFLGE---QDGILDLETGQKVK---------------------PTKE 449 S +D + ++DL+ G + P K Sbjct: 75 YVGEVSKAMDKKKVLVKVHPEGKYVVDLDKGIDINSITSGCRVALRADSYALHKVLPNKI 134 Query: 450 LYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRF 503 + V + L E +EV++ +G+A + Sbjct: 135 DPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFDALGIA------QPKG 188 Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVI 563 + + G G+GK+ L + + I S+++Q E + L + Sbjct: 189 VLLYGPPGTGKTLLARAVAH-HTECTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPS 247 Query: 564 ISETNENDEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLFVRNP 619 I +E D I +++++ +GGD R L E+ + + N+ + Sbjct: 248 IIFMDEIDSIGSSRVEGSSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL--- 304 Query: 620 DDAWWR--RY-IVIPFDKPIANRDASFAQKLETKYTL 653 D A R R I F P A + K L Sbjct: 305 DPALLRPGRIDRKIEFPAPDEKARADILKIHSRKMNL 341 >gi|150439359|emb|CAM13082.2| regulatory factor X, 5 (influences HLA class II expression) [Homo sapiens] Length = 165 Score = 47.2 bits (110), Expect = 0.012, Method: Composition-based stats. Identities = 17/101 (16%), Positives = 33/101 (32%), Gaps = 10/101 (9%) Query: 670 GLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYD 729 G P EE WI + + + S+ +Y +Y E Sbjct: 75 GDKSSEPSTLSN--EEYMYA----YRWIRNHLEEHTDTCLPKQSVYDAYRKYC--ESLAC 126 Query: 730 RKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLK 770 + +ST +++ IK ++ +SK G++ Sbjct: 127 CRPLSTANFGKIIRE--IFPDIKARRLGGRGQSKYCYSGIR 165 >gi|86355579|ref|YP_473247.1| Helicase/P143 [Hyphantria cunea nucleopolyhedrovirus] gi|86198184|dbj|BAE72348.1| Helicase/P143 [Hyphantria cunea nucleopolyhedrovirus] Length = 1230 Score = 47.2 bits (110), Expect = 0.012, Method: Composition-based stats. Identities = 24/157 (15%), Positives = 58/157 (36%), Gaps = 11/157 (7%) Query: 485 YFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP 543 + +L + + ++ +++ GV SGKST L+ + + D + Sbjct: 902 FMLMHFAASLSVPTDYGRKAVYLPGVPLSGKSTFFELLDFL------VLMHKFDDETHTG 955 Query: 544 PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPAS 603 ++ + +L + NE + + + K+ ++ + A+ Sbjct: 956 ESKETSDKEVSKLN----SQLYTINELKKCSESFFKKHADSSKSDSKSRKYQGLLKYEAN 1011 Query: 604 FTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRD 640 + IV N L+V + DD R++++ D + Sbjct: 1012 YKMLIVNNNPLYVDDYDDGVQNRFLIVYTDHKFVPHE 1048 >gi|71651122|ref|XP_814245.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70879201|gb|EAN92394.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 623 Score = 47.2 bits (110), Expect = 0.012, Method: Composition-based stats. Identities = 12/121 (9%), Positives = 26/121 (21%), Gaps = 12/121 (9%) Query: 178 QEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVH 237 + + ++ +L E G WI + + Sbjct: 470 EGADKDATGAANGASKIPPILLPLTEREAVENVSMWLRTGTREVDVGDWRSWIKLGINTF 529 Query: 238 HET-----------RGSSKGKEIARRWSKQGS-TYDEENFNYKWDTFDFEEIGDTAKKRS 285 + + SK+ Y KW +FD +++ Sbjct: 530 RIAYHFRDAQTLRRPAMEELLDAWVEASKKCPMKYRPGVCEAKWSSFDIDKLCKLQDNDW 589 Query: 286 T 286 Sbjct: 590 W 590 >gi|123188200|ref|XP_001281787.1| hypothetical protein [Trichomonas vaginalis G3] gi|121837350|gb|EAX68857.1| hypothetical protein TVAG_105910 [Trichomonas vaginalis G3] Length = 213 Score = 47.2 bits (110), Expect = 0.013, Method: Composition-based stats. Identities = 21/132 (15%), Positives = 41/132 (31%), Gaps = 12/132 (9%) Query: 469 FLDLVSGYF--ESEEVMDYFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLM-NLIKYA 524 +LD V +E V +Y L K + + I G G+GK+T +++ Sbjct: 87 WLDHVKEIICNGNERVYEYILCWFANILQHPSAKNETALIIIGKQGTGKNTFFTDILCKL 146 Query: 525 F-GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTG 583 G +I N S+ + + + +N+ +K + Sbjct: 147 LEGYSNPNMTNIENICGKF-------NSSIENMKLIVCNELQSIDTTKVLNSDALKSLIT 199 Query: 584 GDCMTARLNYGN 595 Y + Sbjct: 200 DKVGVVERKYKD 211 >gi|156544994|ref|XP_001608055.1| PREDICTED: similar to GA13327-PA [Nasonia vitripennis] Length = 405 Score = 46.8 bits (109), Expect = 0.013, Method: Composition-based stats. Identities = 44/301 (14%), Positives = 90/301 (29%), Gaps = 35/301 (11%) Query: 358 FLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSI 417 + V L EE + + +++ + + L+ + Sbjct: 47 QRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDLDKNIDIN- 105 Query: 418 TSDLLDSSSR-FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY 476 D + + ++ L K + + P E + Sbjct: 106 -----DVTPNSRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEI 160 Query: 477 FESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530 +EV++ +G+A + + + G G+GK+ L + + Sbjct: 161 ---KEVIELPVKHPELFDALGIA------QPKGVLLYGPPGTGKTLLARAVAH-HTECTF 210 Query: 531 INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR 590 I S+++Q E + L + I +E D I +++I+ + GD R Sbjct: 211 IRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSSGDSEVQR 270 Query: 591 ----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR--RY-IVIPFDKPIANRDASF 643 L E+ + + N+ + D A R R I F P N +A Sbjct: 271 TMLELLNQLDGFEATKNIKVIMATNRIDIL---DPALLRPGRIDRKIEF--PPPNEEARL 325 Query: 644 A 644 Sbjct: 326 D 326 >gi|148807425|gb|ABR13498.1| hypothetical protein [Pseudomonas aeruginosa] Length = 906 Score = 46.8 bits (109), Expect = 0.013, Method: Composition-based stats. Identities = 55/474 (11%), Positives = 123/474 (25%), Gaps = 53/474 (11%) Query: 183 PLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRG 242 + + W + + R + + ++ H+ + + + Sbjct: 256 EAAQLPQRNNRKFDWNDLHQRWMFIDDAAERAAQIEKDLKTARHEGALLIAES----PAE 311 Query: 243 SSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGL 302 + + + F +K D F+ + + + K L Sbjct: 312 KALLMYDWNSRGEFHFRFGNRLFWFKLDLEKFDRAMRAFENSDDHEDKLLNDRQKRDKAL 371 Query: 303 L-ASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVS 361 + + N ++Y ++WY +D+ + + Sbjct: 372 QQSGNVVEIANCFPQALY---FQRNEVTDESWYYFR----------IDRPDDESVKNTFT 418 Query: 362 MKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDL 421 + S+ + ++ + G T D Sbjct: 419 SAQVAAA-----------SEFKKRLLGVAAGAIFTGSGAQLDQIMKLQLTGLKTVATIDY 467 Query: 422 LDSSSRFLGEQDGILDLETGQKVKPTKELYITKS------------TGTPFVEGEPSQEF 469 L S G + + G K E + + E+ Sbjct: 468 LGYSREHACYVLGDVAVRGGVIEKANAEDFFEFQKLRLKTLQRSIKLQIATDAKDYRPEW 527 Query: 470 LDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIH----IRGVGGSGKSTLMNLIKYAF 525 LD + F ++ ++ G +A+ G G+GKSTL+ + Sbjct: 528 LDWLWTCFGAKGLVA-LAFWFGSLFAEQIRAEFQSFPFLEATGEAGAGKSTLITFLWKLL 586 Query: 526 G--NQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTG 583 G ++ + R +N ++ L R + + K + Sbjct: 587 GRADEEGQDPSKMTKAGLRRWLTQLSNMPMVMLEADRSDNSRAGGAAKSFDWDEFKPLFN 646 Query: 584 GDC--MTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP 635 G +T + GN E P T + N + +A R + + F +P Sbjct: 647 GRALGVTGQKTAGNETYEPPFRGTLVMSQNATVQ---ASEAIMTRIVKLHFIRP 697 >gi|17313257|ref|NP_490637.1| hypothetical protein phiCTXp40 [Pseudomonas phage phiCTX] gi|4063811|dbj|BAA36265.1| unnamed protein product [Pseudomonas phage phiCTX] Length = 895 Score = 46.8 bits (109), Expect = 0.014, Method: Composition-based stats. Identities = 55/474 (11%), Positives = 127/474 (26%), Gaps = 53/474 (11%) Query: 183 PLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRG 242 + + W + + R + ++ ++ H+ + + + Sbjct: 245 EAAQLPQRNNRKFDWNDLHQRWMFIDDAAERVAQIEKDLKTARHEGALLIAES----AAE 300 Query: 243 SSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGL 302 + + + + + +K D F + + + + ++ K L Sbjct: 301 KALLMYDWGKRGEFHFRFANRLYWFKLDIEKFNKAMQSLEDSDNHDDQLLNQKQMRDKAL 360 Query: 303 L-ASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVS 361 A + N ++Y ++WY +D+ + + Sbjct: 361 QQAGGVVEIANCFPQALY---FQRNEVTDESWYYFR----------IDRPDDESVKNTFT 407 Query: 362 MKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDL 421 + S+ + ++ + G T D Sbjct: 408 SAQVAAA-----------SEFKKRLLGVAAGAIFTGSGAQLDQIMKLQLTGLKTVATIDY 456 Query: 422 LDSSSRFLGEQDGILDLETGQKVKPTKELYITKS------------TGTPFVEGEPSQEF 469 L S G + + G K E + + E+ Sbjct: 457 LGYSREHACYVLGDVAVRGGVIEKANAEDFFEFQKLRLKTLQRSIKLQIATDAKDYRPEW 516 Query: 470 LDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIH----IRGVGGSGKSTLMNLIKYAF 525 LD + F ++ ++ G +A+ G G+GKSTL+ + Sbjct: 517 LDWLWTCFGAKGLVA-LAFWFGSLFAEQIRAEFQSFPFLEATGEAGAGKSTLITFLWKLL 575 Query: 526 G--NQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTG 583 G ++ + R +N ++ L R + + K + Sbjct: 576 GRADEEGQDPSKMTKAGLRRWLTQLSNMPMVMLEADRSDNSRAGGAAKSFDWDEFKPLFN 635 Query: 584 GDC--MTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP 635 G +T + GN E P T + N + +A R + + F +P Sbjct: 636 GRALGVTGQKTAGNETYEPPFRGTLVMSQNATVQ---ASEAIMTRIVKLHFIRP 686 >gi|9630034|ref|NP_046252.1| helicase [Orgyia pseudotsugata MNPV] gi|2493172|sp|Q83950|V143_NPVOP RecName: Full=ATP-dependent DNA helicase P143 gi|7436434|pir||T10365 helicase - Orgyia pseudotsugata nuclear polyhedrosis virus gi|1209065|gb|AAB60602.1| DNA helicase [Orgyia pseudotsugata single capsid nuclopolyhedrovirus] gi|1911342|gb|AAC59095.1| helicase [Orgyia pseudotsugata MNPV] Length = 1223 Score = 46.8 bits (109), Expect = 0.014, Method: Composition-based stats. Identities = 25/153 (16%), Positives = 56/153 (36%), Gaps = 11/153 (7%) Query: 485 YFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP 543 Y +L + + ++ +++ GV SGKST L+ + + D + Sbjct: 895 YMLMHFAASLSVPTDYGRKAVYLPGVPLSGKSTFFELLDFL------VLMHKFDDDTHTG 948 Query: 544 PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPAS 603 ++ + L + NE + + + K+ ++ + A+ Sbjct: 949 ASKETSDKEVSNLN----SEVYTINELKKCSESFFKKHADSSKSDSKSRKYQGLLKYEAN 1004 Query: 604 FTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI 636 + IV N L+V + DD R++++ D Sbjct: 1005 YKMLIVNNNPLYVDDYDDGVQNRFLIVYTDHKF 1037 >gi|242005917|ref|XP_002423806.1| 26S protease regulatory subunit, putative [Pediculus humanus corporis] gi|212507022|gb|EEB11068.1| 26S protease regulatory subunit, putative [Pediculus humanus corporis] Length = 414 Score = 46.8 bits (109), Expect = 0.014, Method: Composition-based stats. Identities = 47/303 (15%), Positives = 92/303 (30%), Gaps = 39/303 (12%) Query: 358 FLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSI 417 + V L EE + + +++ + + E + I Sbjct: 56 QRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKV--------HPEGKFVVDI 107 Query: 418 TS--DLLDSSSR-FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVS 474 D+ D + + ++ L K + + P E + Sbjct: 108 DKNIDINDVTPNSRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIK 167 Query: 475 GYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 +EV++ +G+A + + + G G+GK+ L + + Sbjct: 168 EI---KEVIELPVKHPELFDALGIA------QPKGVLLYGPPGTGKTLLARAVAH-HTEC 217 Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588 I S+++Q E + L + I +E D I +++I+ GGD Sbjct: 218 TFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESANGGDSEV 277 Query: 589 AR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR--RY-IVIPFDKPIANRDA 641 R L E+ + + N+ + D A R R I F P N +A Sbjct: 278 QRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DPALLRPGRIDRKIEF--PPPNEEA 332 Query: 642 SFA 644 Sbjct: 333 RLD 335 >gi|170040376|ref|XP_001847977.1| rfx5 [Culex quinquefasciatus] gi|167863935|gb|EDS27318.1| rfx5 [Culex quinquefasciatus] Length = 286 Score = 46.8 bits (109), Expect = 0.014, Method: Composition-based stats. Identities = 14/84 (16%), Positives = 29/84 (34%), Gaps = 5/84 (5%) Query: 687 RQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746 R + W+ + N+ + + Y + E D K +ST +KQ Sbjct: 77 RSEINHTINWVRSHLEHDPNVSIPKQEVYEDYIAFCE---RIDIKPLSTADFGKVMKQ-- 131 Query: 747 FIGGIKREKIEKEWKSKRIIKGLK 770 GI+ ++ S+ ++ Sbjct: 132 VFPGIRPRRLGTRGHSRYCYAAMR 155 >gi|9627366|ref|NP_041834.1| E1 protein [Human papillomavirus type 49] gi|549231|sp|P36729|VE1_HPV49 RecName: Full=Replication protein E1; AltName: Full=ATP-dependent helicase E1 gi|397033|emb|CAA52581.1| early protein [Human papillomavirus type 49] Length = 609 Score = 46.8 bits (109), Expect = 0.014, Method: Composition-based stats. Identities = 35/314 (11%), Positives = 85/314 (27%), Gaps = 40/314 (12%) Query: 333 WYKKDKNNVYIWSLTL--DKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTD 390 WYK ++ + ++++ + FDLSE + + + Sbjct: 279 WYKGSMDSSVYAHGAYPDWIVNQTMISHQAAADAMQFDLSEMIQWAYDSDLTDEADIAYL 338 Query: 391 YRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKEL 450 Y + +++ A + +A + G+ + Sbjct: 339 YAKMANSDSNARAWLAHNNQAR--------------YLRECAQMVRHYRRGEMRDMSMSE 384 Query: 451 YITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVG 510 +I EG E + + F+ + + + G K + G Sbjct: 385 WIHHRIQQVEGEG-HWSEIVKFIR--FQEINFIIFL-DAFKQFIHGKPKKSCLLI-HGPP 439 Query: 511 GSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISET--N 568 GKS + + + A K+ L L +I ++ + Sbjct: 440 DCGKSMFAMSLLKVLKGKVISFVNA------------KSQFWLSPLSECKIGLLDDATDP 487 Query: 569 ENDEINAAKIKQMTGGDCMTARLNYGNTY-SESPASFTPFIVPNKHLFVRNPDDAWWRRY 627 I+ ++ G+ ++ + P I N ++ + + R Sbjct: 488 CWQYIDT-YLRNGLDGNVVSVDCKHKTPMQIRFPP---LLITSNYNIKANDKYKFLYSRI 543 Query: 628 IVIPFDKPIANRDA 641 + F ++ Sbjct: 544 AIFEFKHKFPFKED 557 >gi|218670885|ref|ZP_03520556.1| hypothetical protein RetlG_04143 [Rhizobium etli GR56] Length = 266 Score = 46.8 bits (109), Expect = 0.014, Method: Composition-based stats. Identities = 19/150 (12%), Positives = 47/150 (31%), Gaps = 5/150 (3%) Query: 173 LFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPV 232 L + + V ++ + ++T ++ + D++ Sbjct: 63 LADAAKALDVDTAASRERGDRQVGQSFTTRTEWTEAQLMDVAEKLPNT--DLDWDDFNST 120 Query: 233 VMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFY 292 MA + GSS G E R +S + + +D+ +W+ + D + Sbjct: 121 GMAFYDAAHGSSHGYEAFRTFSAKSAKHDDAETEARWEHYKSSPP-DRISGTWLIDRVRK 179 Query: 293 HHGKLIPKGLLASRFSDAYNKAMFSIYKKG 322 + L S+ + + ++ G Sbjct: 180 FADPMYV--LPHPELSEVEKQELRDLFHSG 207 >gi|96979825|ref|YP_611030.1| helicase [Antheraea pernyi nucleopolyhedrovirus] gi|94983358|gb|ABF50298.1| helicase [Antheraea pernyi nucleopolyhedrovirus] Length = 1212 Score = 46.8 bits (109), Expect = 0.014, Method: Composition-based stats. Identities = 24/152 (15%), Positives = 53/152 (34%), Gaps = 11/152 (7%) Query: 486 FTRCVGMALLGGNKA-QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544 +L ++ +++ GV SGKST L+ + + D + Sbjct: 884 MLMHFAASLSAPTDYGRKAVYLPGVPLSGKSTFFELLDFL------VLMHKFDDETHTGE 937 Query: 545 EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604 ++ + +L + NE + + + K+ + + A++ Sbjct: 938 SRETSDKEVSKLN----SQLYTINELKKCSESFFKKHADSSKCDTKSRKYQGLLKYEANY 993 Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI 636 IV N L+V + DD R++++ D Sbjct: 994 KMLIVNNNPLYVDDYDDGVQNRFLIVYTDHKF 1025 >gi|284504072|ref|YP_003406787.1| highly derived D5-like helicase-primase [Marseillevirus] gi|282935510|gb|ADB03825.1| highly derived D5-like helicase-primase [Marseillevirus] Length = 806 Score = 46.8 bits (109), Expect = 0.014, Method: Composition-based stats. Identities = 58/462 (12%), Positives = 135/462 (29%), Gaps = 62/462 (13%) Query: 338 KNNVYIWSLTLDKITASIMNFLVSMKEDV----FDLSEEPEDNNKNSKSPRFWFNTDYRR 393 + Y W+ + + + M++DV + + + Sbjct: 371 SDRWY-WANFSMEFSGKVYKNREEMRDDVVPNMRRVFAYVPGSGNVVVKANKDECFKIHK 429 Query: 394 QNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYIT 453 + +++ K Q + I+ + G L + L I Sbjct: 430 SSFVKSAAIKFFLQVEGVKELLPISLANFFQENHLSFTVHG-LCFFPFSPEEDDSRLPIE 488 Query: 454 KSTGTPFVEGEPSQE---------FLDLVSGYFES--EEVMDYFTRCVGMALLGGNKAQ- 501 + +P E LD + + +E DY + + + Sbjct: 489 YINTFEGFKAQPVDEGVDREKIRPLLDHLFEIWADGSKENFDYIISWLSHIIKNPREKTG 548 Query: 502 -RFIHIRGVGGSGKSTLMNLI-KYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGS 559 + + G+GK + + + FG + + + +R L Sbjct: 549 VALVILSEAQGAGKGIITDFLLDKVFGRKLGKCIGDIERVVHRFNSV---------LDKK 599 Query: 560 RIVIISETNEND----EINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLF 615 +V++ E N+ D + IK + + T E + N Sbjct: 600 LLVVLDEMNQVDAGAYHKSFDVIKHLITEKTVQIERKGVETTEEESF-VNFILTTNNTFS 658 Query: 616 VR----NPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGL 671 V+ + A +R +D + ++L + E + F+K + + + Sbjct: 659 VKVEQSDRRYAMFR-------CSDKRAKDFDYFRELAGSLSDECARHFIKFLIDWGGVDI 711 Query: 672 DVDIPEVC--LKAKEEERQGTDTYQAWID----DCCDIGENLWEESHSLAKSYSEYREQE 725 +IPE + + + + Q +++ + D E+ W + + + + + + Sbjct: 712 K-NIPETSLKKECRNNSKNAS---QLFLEDFSTEEYDKDEDGWFSATEVYQDFVMWAQNN 767 Query: 726 LNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIK 767 K I V K F +++ K K + K Sbjct: 768 G---YKNIPNANVFGRTAGKVFG----KKRQRKNGKLALMWK 802 >gi|158635116|gb|ABW76420.1| helicase [Antheraea pernyi nucleopolyhedrovirus] Length = 1212 Score = 46.8 bits (109), Expect = 0.014, Method: Composition-based stats. Identities = 24/152 (15%), Positives = 53/152 (34%), Gaps = 11/152 (7%) Query: 486 FTRCVGMALLGGNKA-QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544 +L ++ +++ GV SGKST L+ + + D + Sbjct: 884 MLMHFAASLSAPTDYGRKAVYLPGVPLSGKSTFFELLDFL------VLMHKFDDETHTGE 937 Query: 545 EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604 ++ + +L + NE + + + K+ + + A++ Sbjct: 938 SRETSDKEVSKLN----SQLYTINELKKCSESFFKKHADSSKCDTKSRKYQGLLKYEANY 993 Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI 636 IV N L+V + DD R++++ D Sbjct: 994 KMLIVNNNPLYVDDYDDGVQNRFLIVYTDHKF 1025 >gi|146229724|gb|ABQ12289.1| helicase [Antheraea pernyi nucleopolyhedrovirus] Length = 1212 Score = 46.8 bits (109), Expect = 0.015, Method: Composition-based stats. Identities = 24/152 (15%), Positives = 53/152 (34%), Gaps = 11/152 (7%) Query: 486 FTRCVGMALLGGNKA-QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544 +L ++ +++ GV SGKST L+ + + D + Sbjct: 884 MLMHFAASLSAPTDYGRKAVYLPGVPLSGKSTFFELLDFL------VLMHKFDDETHTGE 937 Query: 545 EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604 ++ + +L + NE + + + K+ + + A++ Sbjct: 938 SRETSDKEVSKLN----SQLYTINELKKCSESFFKKHADSSKCDTKSRKYQGLLKYEANY 993 Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI 636 IV N L+V + DD R++++ D Sbjct: 994 KMLIVNNNPLYVDDYDDGVQNRFLIVYTDHKF 1025 >gi|293369975|ref|ZP_06616542.1| VirE N-terminal domain protein [Bacteroides ovatus SD CMC 3f] gi|292634893|gb|EFF53415.1| VirE N-terminal domain protein [Bacteroides ovatus SD CMC 3f] Length = 325 Score = 46.8 bits (109), Expect = 0.015, Method: Composition-based stats. Identities = 37/270 (13%), Positives = 82/270 (30%), Gaps = 35/270 (12%) Query: 39 QLLSSEKIDKLPACGFGFVC--GVGE----------QPLYAFDIDSKDEKTANTFKDTFE 86 + E+ K + GV L DID KD + + + + Sbjct: 42 RETDDEEKRKYLKSSLPAITVSGVFSKRRADSLIRPSNLICIDIDGKDNPSISDMEKFKK 101 Query: 87 ILHGTPIV------RIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQY------ 134 L P V G+ +IP+ + + ++I+ Sbjct: 102 RLAELPYVMYCGLSASGKGAFCIIPYDDFGKHKLYFNALQREFKEMEIIIDSSCSDICRL 161 Query: 135 -FVAYNIHP----KTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKK 189 F +Y+ HP + + ++ + S+ + + E L ++ Sbjct: 162 RFYSYDEHPYVNWDAEVYTHTMEKTNIAHLKSKEVFSKRSSD--IQISNENPRALSIEEA 219 Query: 190 SIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYN--GSHDEWIPVVMAVHHETRGSSKGK 247 + PS + E L+ E + ++WI + + + + KG Sbjct: 220 LLQPSNLDFASATPLSKTEEAERLLNLVIERQIDITPIFNDWIKIGLVIKNLF--GDKGL 277 Query: 248 EIARRWSKQGSTYDEENFNYKWDTFDFEEI 277 ++ + S Y +E K+ + ++ Sbjct: 278 DLFLKVSSFHPKYSQEEAESKYFELNEKKY 307 >gi|324517522|gb|ADY46845.1| 26S protease regulatory subunit 8 [Ascaris suum] Length = 407 Score = 46.8 bits (109), Expect = 0.015, Method: Composition-based stats. Identities = 50/329 (15%), Positives = 94/329 (28%), Gaps = 47/329 (14%) Query: 362 MKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDL 421 +K E+ + N + + Q E GS S Sbjct: 21 LKRYYKTKIEDAQQRVTEKTQNLRRLQAQRNELNSKVRMLKEELQQLHEQGSYVGEVSKA 80 Query: 422 LDSSSRFLGE-QDGILDLETGQKVK-----------------------PTKELYITKSTG 457 +D + +G ++ + + P K + Sbjct: 81 MDKKKVLVKVHPEGKYVVDVDKGIDVSAVNAGCRVALRADSYALHKILPNKVDPLVSLMM 140 Query: 458 TPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGVGG 511 V + L E +EV++ +G+A + + + G G Sbjct: 141 VEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIA------QPKGVLLYGPPG 194 Query: 512 SGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEND 571 +GK+ L + + I S+++Q E + L + I +E D Sbjct: 195 TGKTLLARAVAH-HTECTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEID 253 Query: 572 EINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR-- 625 I +++++ +GGD R L E+ + + N+ + D A R Sbjct: 254 SIGSSRVEGSSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DPALLRPG 310 Query: 626 RY-IVIPFDKPIANRDASFAQKLETKYTL 653 R I F P A + K L Sbjct: 311 RIDRKIEFPAPDEKARADILKIHSRKMNL 339 >gi|324515052|gb|ADY46074.1| 26S protease regulatory subunit 8 [Ascaris suum] Length = 465 Score = 46.8 bits (109), Expect = 0.015, Method: Composition-based stats. Identities = 50/329 (15%), Positives = 94/329 (28%), Gaps = 47/329 (14%) Query: 362 MKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDL 421 +K E+ + N + + Q E GS S Sbjct: 79 LKRYYKTKIEDAQQRVTEKTQNLRRLQAQRNELNSKVRMLKEELQQLHEQGSYVGEVSKA 138 Query: 422 LDSSSRFLGE-QDGILDLETGQKVK-----------------------PTKELYITKSTG 457 +D + +G ++ + + P K + Sbjct: 139 MDKKKVLVKVHPEGKYVVDVDKGIDVSAVNAGCRVALRADSYALHKILPNKVDPLVSLMM 198 Query: 458 TPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGVGG 511 V + L E +EV++ +G+A + + + G G Sbjct: 199 VEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIA------QPKGVLLYGPPG 252 Query: 512 SGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEND 571 +GK+ L + + I S+++Q E + L + I +E D Sbjct: 253 TGKTLLARAVAH-HTECTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEID 311 Query: 572 EINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR-- 625 I +++++ +GGD R L E+ + + N+ + D A R Sbjct: 312 SIGSSRVEGSSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DPALLRPG 368 Query: 626 RY-IVIPFDKPIANRDASFAQKLETKYTL 653 R I F P A + K L Sbjct: 369 RIDRKIEFPAPDEKARADILKIHSRKMNL 397 >gi|9634291|ref|NP_037830.1| ORF70 helicase [Spodoptera exigua MNPV] gi|2394409|gb|AAB96630.1| ORF70 helicase [Spodoptera exigua MNPV] Length = 1222 Score = 46.8 bits (109), Expect = 0.015, Method: Composition-based stats. Identities = 23/146 (15%), Positives = 45/146 (30%), Gaps = 12/146 (8%) Query: 495 LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLI 554 + + + +++ G GSGKS+ + + A + ++ Sbjct: 917 IPTDYEKCCLYLNGKPGSGKSSFFAVFDHFIVVHKHDTANYTLTKKDTNEMEAD------ 970 Query: 555 RLMGSRIVIISETNENDEINAAKIKQMT-GGDCMTARLNYGNTYSESPASFTPFIVPNKH 613 I + NE + + K + Y + + +F IV NK Sbjct: 971 ----KMISQLYVINEMKVCDDSFFKSTADSTKSNSVCRKYEGSQ-KYEGNFKLMIVNNKP 1025 Query: 614 LFVRNPDDAWWRRYIVIPFDKPIANR 639 L + + D R+ VI D Sbjct: 1026 LHISDYDKGVRNRFAVIYTDHLFEEN 1051 >gi|2665485|gb|AAB88621.1| putative DNA helicase [Spodoptera exigua MNPV] Length = 1222 Score = 46.8 bits (109), Expect = 0.015, Method: Composition-based stats. Identities = 23/146 (15%), Positives = 45/146 (30%), Gaps = 12/146 (8%) Query: 495 LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLI 554 + + + +++ G GSGKS+ + + A + ++ Sbjct: 917 IPTDYEKCCLYLNGKPGSGKSSFFAVFDHFIVVHKHDTANYTLTKKDTNEMEAD------ 970 Query: 555 RLMGSRIVIISETNENDEINAAKIKQMT-GGDCMTARLNYGNTYSESPASFTPFIVPNKH 613 I + NE + + K + Y + + +F IV NK Sbjct: 971 ----KMISQLYVINEMKVCDDSFFKSTADSTKSNSVCRKYEGSQ-KYEGNFKLMIVNNKP 1025 Query: 614 LFVRNPDDAWWRRYIVIPFDKPIANR 639 L + + D R+ VI D Sbjct: 1026 LHISDYDKGVRNRFAVIYTDHLFEEN 1051 >gi|325193390|emb|CCA27721.1| AlNc14C654G12337 [Albugo laibachii Nc14] Length = 470 Score = 46.8 bits (109), Expect = 0.016, Method: Composition-based stats. Identities = 31/173 (17%), Positives = 56/173 (32%), Gaps = 22/173 (12%) Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540 + +D C+G +L + R + + G GG+GKS +N N + A S Sbjct: 196 DSLDTLMWCIGNSLRDPVQTPRMLFLFGEGGNGKSVAINT---LISNLPCVVATLSRDYI 252 Query: 541 NRPPEAGKANPSLIRLMGSRIVIISET-NENDEINAAKIKQMTGGDCMTARLNYGNTYSE 599 R + + I N + ++N A +K ++G D +T+ G Sbjct: 253 GRTTQQLTETDLERIMTHRFICYGDVVLNRHRQVNEAFLKIVSGNDAVTSSRMSG----- 307 Query: 600 SPASFTPFIVPNKHLFVRNPD--DAWWRRYIVIPFDKP----------IANRD 640 N + RR + + +KP +D Sbjct: 308 -RLQCGGLFATNALWKAYPSVMMPWFSRRVVCVELNKPQPGTTQPREHFTEQD 359 >gi|333024418|ref|ZP_08452482.1| hypothetical protein STTU_1922 [Streptomyces sp. Tu6071] gi|332744270|gb|EGJ74711.1| hypothetical protein STTU_1922 [Streptomyces sp. Tu6071] Length = 210 Score = 46.8 bits (109), Expect = 0.016, Method: Composition-based stats. Identities = 14/88 (15%), Positives = 23/88 (26%), Gaps = 3/88 (3%) Query: 75 EKTANTFKDTFEILH-GTPIVRIGQKP-KILIPFRMNKEGIKKKKTTESTQGHLDILGCG 132 A + E P R + P + + + T + +D G Sbjct: 9 PDGAAHLRALAEQHGQPVPSTRTVRTPSGGTHLYFPAPAAARLRNTAGTLAPLVDTRAWG 68 Query: 133 QYFVAYNIHPKTKKEYTWTTPPHRFKVE 160 Y VA T + Y P + Sbjct: 69 GYVVAPGSILPTGQ-YESVAPFALRPLP 95 >gi|257052762|ref|YP_003130595.1| conjugation protein [Halorhabdus utahensis DSM 12940] gi|256691525|gb|ACV11862.1| conjugation protein [Halorhabdus utahensis DSM 12940] Length = 1342 Score = 46.8 bits (109), Expect = 0.016, Method: Composition-based stats. Identities = 9/82 (10%), Positives = 23/82 (28%), Gaps = 6/82 (7%) Query: 693 YQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIK 752 + + + + ++ +Y E+ E S L + Sbjct: 1261 IGVFAAERLREDGDAIVMTAAVYDAYCEWAEDRGLPVE---SKNWFARRLSNH---VSFE 1314 Query: 753 REKIEKEWKSKRIIKGLKLKPA 774 R ++ + R G+ L+ Sbjct: 1315 RTAENRDGTTVRCYAGIDLQEG 1336 >gi|156102222|ref|XP_001616804.1| ATP-dependent protease [Plasmodium vivax SaI-1] gi|148805678|gb|EDL47077.1| ATP-dependent protease, putative [Plasmodium vivax] Length = 1017 Score = 46.8 bits (109), Expect = 0.016, Method: Composition-based stats. Identities = 48/359 (13%), Positives = 107/359 (29%), Gaps = 37/359 (10%) Query: 358 FLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSI 417 L+ MK+++ + ++ + ++ + E + + + A Sbjct: 322 ILLKMKKELSTNLKNK--FDEEKEKLMIRECISNLKKKIGEKTDHEILSDKFFAKFQSKR 379 Query: 418 TSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE----FLDLV 473 + ++S+ L E + + Y+ PF + P E + Sbjct: 380 SHMGEEASAAILRELNKFSLYSEHCSDYASTYQYLNTVLSIPFGKYAPLCEDISACERTL 439 Query: 474 SGY-FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532 + + +V Y VG+ +L N + + + G G GK+++ I A + I Sbjct: 440 TKSHYGLHQVKRYILEYVGLYILNKNVKPKILTLVGYPGIGKTSICKSISSALQLPHCII 499 Query: 533 AEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDE---INAAKIKQMTGGDCMTA 589 + N G + G + + T+ + ++ T G+ +A Sbjct: 500 NMNNITSMN--ELIGHRRTYVNSYEGRIVQALISTDVMNPLIVLDELDKISFTNGNVYSA 557 Query: 590 ---------RLNYGNTYSESPAS---FTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637 Y + Y P + N + R V+ P Sbjct: 558 LLNLFDSSQNKGYKDVYVNFPINIGRAFFICTANSVEHIPET---LLDRMEVVH-VYPYT 613 Query: 638 NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAW 696 N + F K K ++ + IS+GL + + + + + Sbjct: 614 NEEKVFIFKNYLKKKIQEETKVTDEYLH-ISEGLLLYV-------IQNYTNEN-GLRQF 663 >gi|90592797|ref|YP_529750.1| helicase [Agrotis segetum nucleopolyhedrovirus] gi|71559247|gb|AAZ38246.1| helicase [Agrotis segetum nucleopolyhedrovirus] Length = 1213 Score = 46.8 bits (109), Expect = 0.016, Method: Composition-based stats. Identities = 24/146 (16%), Positives = 47/146 (32%), Gaps = 12/146 (8%) Query: 495 LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLI 554 + + + +++ G GSGKS+ + + +A+ + ++ Sbjct: 908 IPTDYEKCCLYLNGKPGSGKSSFFAVFDHFVVVHKHDSAKYTLTKKDTNEMEAD------ 961 Query: 555 RLMGSRIVIISETNENDEINAAKIKQMT-GGDCMTARLNYGNTYSESPASFTPFIVPNKH 613 I + NE + + K T Y + + +F IV NK Sbjct: 962 ----KMISQLYVINEMKVCDDSFFKSTADSTKSNTVCRKYEGSQ-KYEGNFKLLIVNNKP 1016 Query: 614 LFVRNPDDAWWRRYIVIPFDKPIANR 639 L + + D R+ VI D Sbjct: 1017 LHISDYDKGVRNRFAVIYTDHLFEEN 1042 >gi|549225|sp|Q05112|VE1_HPV30 RecName: Full=Replication protein E1; AltName: Full=ATP-dependent helicase E1 gi|396976|emb|CAA52545.1| early protein [Human papillomavirus type 30] Length = 631 Score = 46.8 bits (109), Expect = 0.017, Method: Composition-based stats. Identities = 33/291 (11%), Positives = 83/291 (28%), Gaps = 29/291 (9%) Query: 358 FLVSMKEDVFDLSEE-PEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFS 416 F + ++ D+ E PE + ++ + + + + + + + ++ Sbjct: 303 FYKTAMSNISDIYGETPEWIQRQTQIQHSFQDCQFELSKMVQWAFDNDVTDDSDIAFYYA 362 Query: 417 ITSDLLDSSSRFLGEQD--GILDLETGQKVKPTKE------LYITKSTGTP--FVEGEPS 466 +D+ DS+++ + + + G + K T EG Sbjct: 363 QLADV-DSNAQAFLKSNMQAKYVKDCGIMCRHYKRAQQQQMNMKQWITHICSKVDEGGDW 421 Query: 467 QEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFG 526 + + + ++ + + + + L G K + + G +GKS + F Sbjct: 422 RPIVQFLR--YQGVDFISFL-SYFKLFLRGTPKHN-CLVLYGPPNTGKSCFAMSLIQFF- 476 Query: 527 NQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDC 586 + + + N L L + +E + G+ Sbjct: 477 ---QGSVISYVNSHSHFWLQPLDNAKLGMLDDATDACWRYIDEYMR-------NLLDGNP 526 Query: 587 MTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637 ++ + I N + R V+PF P Sbjct: 527 VSLDRKHKQLVQIKCPP--VIITTNINPLHDAKLQYLHSRIHVVPFLNPFP 575 >gi|298249962|ref|ZP_06973766.1| hypothetical protein Krac_2588 [Ktedonobacter racemifer DSM 44963] gi|297547966|gb|EFH81833.1| hypothetical protein Krac_2588 [Ktedonobacter racemifer DSM 44963] Length = 98 Score = 46.4 bits (108), Expect = 0.017, Method: Composition-based stats. Identities = 13/84 (15%), Positives = 29/84 (34%), Gaps = 9/84 (10%) Query: 691 DTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGG 750 + + ++ +CC + E E L ++ Y ++ + + L Q+G+ Sbjct: 22 NVVEQFLQECCILEEQQSIEDAQLFANFRAYYKRVWQGEPHPALLGQFRVELTQRGYHSS 81 Query: 751 IKREKIEKEWKSKRIIKGLKLKPA 774 + GL L+P Sbjct: 82 SDKHPT---------WYGLTLRPK 96 >gi|225870596|ref|YP_002746543.1| conjugative transposon DNA recombination protein [Streptococcus equi subsp. equi 4047] gi|213033071|emb|CAP20354.1| putative conjugative transposon DNA recombination protein [Streptococcus equi subsp. equi] gi|225700000|emb|CAW93996.1| putative conjugative transposon DNA recombination protein [Streptococcus equi subsp. equi 4047] Length = 3975 Score = 46.4 bits (108), Expect = 0.017, Method: Composition-based stats. Identities = 39/357 (10%), Positives = 100/357 (28%), Gaps = 56/357 (15%) Query: 19 KLIPLRLGDK--RPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEK 76 +PL + + W + G GF G DID + Sbjct: 34 TKLPLMPNKEPAKSNDKATWNSYEDCIMALKHNVGEGLGFFLG---DGYIGIDIDKVSDD 90 Query: 77 T---------ANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLD 127 ++ D + + + + G + +L+ Sbjct: 91 IMEYNTNHHVSSMTADFLREVSTYAEISPSKTG-LHFI------GKGEVPGERKRYKNLE 143 Query: 128 ILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKD 187 I + +T T + + + +++ L++ + T + + Sbjct: 144 IY-------------DKDRFFTVTGNVIKDRDRSKIESIDSELKPLYEKYMPKTNKISAE 190 Query: 188 KKSIIPSKTWTNNNN--RQYTNREITAFLSCFGEEFYNGSHD---------EWIPVVMAV 236 K ++ + + + +R ++ + Y G+++ ++ + + Sbjct: 191 NKRSPTVTSYNGDQDILEKLFDRGYFSYAGEDLRQIYYGNYERYFNSQSEADFFMLQRLL 250 Query: 237 HHETR-------GSSKGKEIARRWSKQGSTYDEENFNYK-WDTFDFEEIGDTA-KKRSTF 287 ++ S G + + + ++G+T K + + + + Sbjct: 251 YYTGNVEMAISFMESSGLKREKWYKRRGNTDYIHYIADKAISSINQFYDWEKVYTSKEKI 310 Query: 288 TSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIW 344 Y + K +G R+ K + + K F D Y K N Y + Sbjct: 311 EEKRYENKKKK-EGDTVPRYEFDEVKQIL-DFAKEEFKENIDRYETYLKVMGNNYKY 365 >gi|290988944|ref|XP_002677130.1| predicted protein [Naegleria gruberi] gi|284090736|gb|EFC44386.1| predicted protein [Naegleria gruberi] Length = 452 Score = 46.4 bits (108), Expect = 0.017, Method: Composition-based stats. Identities = 56/390 (14%), Positives = 110/390 (28%), Gaps = 60/390 (15%) Query: 347 TLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTA 406 + ++L KE V + ++ K+ D R + + Sbjct: 69 LRILRLERVKDYLTMEKEFVTNQTKLLTAQEKSKDMEEERNMVDELRGSPMAVGTLEEII 128 Query: 407 QSLEAGSIFSITSD-------LLDSSSRFLGEQ----DGILDLETGQKVKPTKELYITKS 455 A S+ + ++D G + L + + + + + K Sbjct: 129 DDNHAIVSSSVGPEFYVSILSIVDKDQLEPGCSILMHNRYLAVVGILQDEADPMVSVMKV 188 Query: 456 TGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGV 509 P D + +E +++ +G K + + + G Sbjct: 189 DKAPLESYSQIGGLEDQIQEI---KEAVEFPLTHPELYEDIG------IKPPKGVILYGE 239 Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569 G+GK+ L + + ++ + I Q E K L R+ I +E Sbjct: 240 PGTGKTLLAKAVAHHTSATFLRVVGSELI-QKYLGEGPKLVRELFRVAEELAPSIVFIDE 298 Query: 570 NDEINAAKIKQMTGGD----CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625 D I + +GG+ L +S + N + + D A R Sbjct: 299 IDAIGTKRFDSTSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATN---RIDSLDTALIR 355 Query: 626 -----RYIVIPFDKPIANR--------------DASFAQKL-ETKYTLEAKKWFL---KG 662 R I PF R D + + + A + G Sbjct: 356 PGRIDRKIKFPFPDVKTKRKIFEIHTRKMSKATDVNLDEFISSKDELSGADIKAICTEAG 415 Query: 663 VKAYISKGLDVDIPEVCLKAKEE--ERQGT 690 + A + L V + KAKE+ ++ Sbjct: 416 LLALRERRLQVTQTD-FTKAKEKVLYKKQQ 444 >gi|326425079|ref|YP_004286302.1| primase [Tsukamurella phage TPA2] gi|323145731|gb|ADX31975.1| primase [Tsukamurella phage TPA2] Length = 869 Score = 46.4 bits (108), Expect = 0.017, Method: Composition-based stats. Identities = 28/187 (14%), Positives = 50/187 (26%), Gaps = 26/187 (13%) Query: 53 GFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQK--------PKILI 104 FG G + D D+K + D L P V K Sbjct: 127 NFGIEVGR--SRVIVVDCDTK-AEVTAFLTDFGAPLDMPPTVTTPGKVVDGEWLHKDGGH 183 Query: 105 PFRMNKEGIKKKKTTE------STQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFK 158 + EG++ + IL +Y V + Y Sbjct: 184 FYFTLPEGVELPSQPGAMVVGSDPEAKYAILWAQRYVVIPPSIREEG-PYELLG------ 236 Query: 159 VEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFG 218 D P +EE V+ + + + D T + ++Q + +I + + Sbjct: 237 -RDYP-ATEELVDAILEQADRRAARMKHDGPRDEGLATAIDAWSQQVSWSDILSPIGWTP 294 Query: 219 EEFYNGS 225 +G Sbjct: 295 AARPDGC 301 >gi|33622281|ref|NP_891928.1| helicase [Cryptophlebia leucotreta granulovirus] gi|33569390|gb|AAQ21676.1| helicase [Cryptophlebia leucotreta granulovirus] Length = 1128 Score = 46.4 bits (108), Expect = 0.017, Method: Composition-based stats. Identities = 39/293 (13%), Positives = 87/293 (29%), Gaps = 42/293 (14%) Query: 486 FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545 N + + + GKS+L L I D + R Sbjct: 809 LINFCASLAQPINNEKMCLVLSSKPNCGKSSLWELFSK-----NKILVYKQDKEEYRH-- 861 Query: 546 AGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCM-TARLNYGNTYSESPASF 604 + ++L S++ +++E + + +K + + +AR NYG +F Sbjct: 862 SKTERDEKVKLYESQLYVMNEAQKFSK---TFLKTIVDSTRIDSARCNYG-IMENFNITF 917 Query: 605 TPFIVPNK--HLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKG 662 + N+ + + D A R + FD + Sbjct: 918 KALVCNNEDDKILIHGYDRACSNRIGQMYFDHDFDDS----------SEFSG-------- 959 Query: 663 VKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYR 722 + L E + + +A++ + N + L Y + Sbjct: 960 --SVYEHYLKKKYCE-VRDVTD-YLKE--PVRAFLANILQYKCNPKD--GQLY--YKCFL 1009 Query: 723 EQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAF 775 + + Y + +L+ ++ +K K E+ + +I +KL + Sbjct: 1010 QSDNTYKHNKKCLYIYNNSLEALLYVINVKELKTAPEFSEEVLIDTIKLAEKY 1062 >gi|187922194|ref|YP_001893836.1| Primase 2 [Burkholderia phytofirmans PsJN] gi|187713388|gb|ACD14612.1| Primase 2 [Burkholderia phytofirmans PsJN] Length = 637 Score = 46.4 bits (108), Expect = 0.017, Method: Composition-based stats. Identities = 14/80 (17%), Positives = 24/80 (30%), Gaps = 9/80 (11%) Query: 217 FGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEE 276 +G + W+ + A+ G +I WS+ Y E W + Sbjct: 15 ALAMIPSGDYATWVDMAFALKQGF--GEAGFDIWDEWSRTAHNYSERAARVTWRSAGESG 72 Query: 277 IGDTAKKRSTFTSLFYHHGK 296 T SLF+ + Sbjct: 73 G-------KTLASLFWLAQQ 85 >gi|42779465|ref|NP_976712.1| virulence-associated protein E [Bacillus cereus ATCC 10987] gi|42735381|gb|AAS39320.1| virulence-associated protein E [Bacillus cereus ATCC 10987] Length = 788 Score = 46.4 bits (108), Expect = 0.018, Method: Composition-based stats. Identities = 31/210 (14%), Positives = 60/210 (28%), Gaps = 22/210 (10%) Query: 482 VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQN 541 + V G K + + G G GKST G+ + + +D+ Sbjct: 484 IRKTMVAAVARIYRPGTKFDSVLILNGPQGIGKSTF---FAKLAGDWFSDSLTITDMKDK 540 Query: 542 RPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESP 601 E +L G ++ + E + + +K R +YG P Sbjct: 541 SGAE---------KLQGYWLLELGELAGMRKTDVEIVKSFISRADDKYRASYGVNVESHP 591 Query: 602 ASFTPFIVPNKHL-FVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFL 660 N F+R+ RR+ + I+ A ++ + + W Sbjct: 592 RQCVIVGSTNAESGFLRDITG--NRRF----WPVRISGNSRKKAWQMTKEEVQQI--WA- 642 Query: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGT 690 + + Y + A E+ Sbjct: 643 EALVLYEKGEKLYLEGDDVTMATSEQADAM 672 >gi|168050549|ref|XP_001777721.1| predicted protein [Physcomitrella patens subsp. patens] gi|162670941|gb|EDQ57501.1| predicted protein [Physcomitrella patens subsp. patens] Length = 850 Score = 46.4 bits (108), Expect = 0.018, Method: Composition-based stats. Identities = 50/361 (13%), Positives = 110/361 (30%), Gaps = 50/361 (13%) Query: 339 NNVYIWSLTLDKITASIMNFLVSM----------KEDVFDLSEEPEDNNKNSKSPRFWFN 388 N ++ S TLD + L+ K+ + L++E K+ K+ Sbjct: 154 NLTFVISGTLDSLEREEAEHLIKSHGGRVTGSVSKKTDYLLADEDIGGRKSQKAKELGVK 213 Query: 389 TDY--------RRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLET 440 R+ + + + + E + ++ + + I + Sbjct: 214 FITEDGLFEMIRKTKPKAAATSSQAPRPSEPAQPQKVIKPIIPKTDDVRNVKGKIAN--- 270 Query: 441 GQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCV-------GMA 493 T + + E P + ++ ++ ++ + G A Sbjct: 271 -----GTSSSVGNEKSIASGTESWPYKHRPQSINDIIGNQSIVKQVQDWLVQWEKHHGNA 325 Query: 494 LLGG-----NKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY--VINAEA---SDIMQNRP 543 + G ++ + + G G GK+T L+ G + V ++ SD Sbjct: 326 VKGKKGSSSTSQKKAVLLSGPPGIGKTTTARLVCDLLGYEALEVNASDTRGKSDSNVKNG 385 Query: 544 PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPAS 603 +N + + S++ + ++ M+GGD R + +S Sbjct: 386 IGGKTSNTIKEMISNRSLGFGSKSERKAVLIMDEVDGMSGGD----RGGVADLILSIKSS 441 Query: 604 FTPFIV-PNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKG 662 P I N + + +PF KP + A Q++ LE L+ Sbjct: 442 HIPIICICNDKYSQKLKS--LINYCLPLPFRKPTKQQMAKRLQQIAKSEGLEVDDLALEE 499 Query: 663 V 663 + Sbjct: 500 L 500 >gi|289628549|ref|ZP_06461503.1| DNA primase-like protein [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|330870316|gb|EGH05025.1| DNA primase-like protein [Pseudomonas syringae pv. aesculi str. 0893_23] Length = 903 Score = 46.4 bits (108), Expect = 0.018, Method: Composition-based stats. Identities = 67/529 (12%), Positives = 143/529 (27%), Gaps = 40/529 (7%) Query: 153 PPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITA 212 P + +++ P ++ + + K N+ ++++ + Sbjct: 226 PLLVWALDNEPSARGYLQRWVKQSRELGYSCAAALVPQNGRRKVDWNDLHQRWGFEDTDK 285 Query: 213 FLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTF 272 + H+ + + R + + E W F Sbjct: 286 REQRRQRDLDVARHEG----DLLLAPSPREKAILMYTWED--STSEFHFEFANRMYWAKF 339 Query: 273 DFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHF---LYTAD 329 D ++ D ++R+ S + + L + M + + Sbjct: 340 DLSKLED--EQRALLNSDDHDNQLLNDRQARTKVLESVCALKMIANCNFEALYKQVNDVT 397 Query: 330 TKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNT 389 AW+ + +K T + S + + + Sbjct: 398 GDAWFYFQVDT--PNDNAPEKFTFTPKQISSSSEFKARLMYAGATWLGTQKHLDQIVIRQ 455 Query: 390 DYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDG-ILDLETGQKVKP-- 446 + VE + + Q G + + Sbjct: 456 TEGLKTVETIDFIGYSKEHKAYIFND-------------YAVQGGNVYKANDEDYFEFGQ 502 Query: 447 TKELYITKSTGTPFVEGEP--SQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQR-- 502 T+ + KS +L + F + ++ G +A Sbjct: 503 TRVKCLMKSIKISMASTSKGYRDNWLASLWLCFGEKGLVALTY-WFGSLFAEQIRADYES 561 Query: 503 --FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSR 560 F+ + G SGK+TL+ + FG Y A + R G+ + + L+ + Sbjct: 562 FPFLEMSGEPDSGKTTLIKFLWKLFGRIYEGFDPAKGSISGRSRAMGQVSNIPLVLLEAD 621 Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPD 620 +E ++ E + K GG + R N+ F IV ++ V Sbjct: 622 RNTDAENAKSFEWDE--FKDYYGGGLLRTRGVKNNSNDTYEPPFRASIVIAQNAGVSGH- 678 Query: 621 DAWWRRYIVIPFDKP-IANRDASFAQKLETKYTLEAKKWFLKGVKAYIS 668 +A R + F KP I + A L + + +K +KA Sbjct: 679 EAILSRITKLYFAKPIITEESRAAADALVQTEVGDVSHFMVKAMKAEHK 727 >gi|256048950|ref|XP_002569488.1| 26S protease regulatory subunit [Schistosoma mansoni] gi|227281165|emb|CAY19061.1| 26S protease regulatory subunit, putative [Schistosoma mansoni] Length = 431 Score = 46.4 bits (108), Expect = 0.019, Method: Composition-based stats. Identities = 53/342 (15%), Positives = 104/342 (30%), Gaps = 50/342 (14%) Query: 336 KDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNS----KSPRFWFNTDY 391 K + +I++ + + + V L EE + + + + Sbjct: 51 KIDEHQFIYTEKVLNLRRLEAQ-RNELNAKVRMLREELQLLQEQGSFVGEVIKAMDKKKV 109 Query: 392 RRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELY 451 + E +++E I L S S L K+ P+K Sbjct: 110 LVKVQPEGKYVVDIDKNIEMSQISPNCRVALRSDSYTL------------HKILPSKVDP 157 Query: 452 ITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIH 505 + V + L E +EV++ +G+A + + Sbjct: 158 LVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFDALGIA------QPKGVL 211 Query: 506 IRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIIS 565 + G G+GK+ L + + I S+++Q E + L + I Sbjct: 212 LYGPPGTGKTLLARAVAH-HTECTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSII 270 Query: 566 ETNENDEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDD 621 +E D I + +++ TGGD R L E + + N+ + D Sbjct: 271 FMDEVDSIGSTRLESGTGGDSEVQRTMLELLNQLDGFEPKQNIKVIMATNRIDIL---DS 327 Query: 622 AWWR--RY-IVIPFDK----------PIANRDASFAQKLETK 650 A R R I F I +R + + ++ + Sbjct: 328 ALLRPGRIDRKIEFPAPNEEARLDILKIHSRKMNLTRDIDLR 369 >gi|296394514|ref|YP_003659398.1| hypothetical protein Srot_2113 [Segniliparus rotundus DSM 44985] gi|296181661|gb|ADG98567.1| conserved hypothetical protein [Segniliparus rotundus DSM 44985] Length = 191 Score = 46.4 bits (108), Expect = 0.020, Method: Composition-based stats. Identities = 19/132 (14%), Positives = 33/132 (25%), Gaps = 16/132 (12%) Query: 11 KQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDI 70 + G + + G W +S G G + G L +DI Sbjct: 60 RWCRRVGKRPYTIDGRPASSADPGTWSSYAAASRSK---FGHGVGVMLG---DGLGCWDI 113 Query: 71 DS-KDEKTANTFKDTFEILHGTP--IVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLD 127 D + L G P + R + + R + QG ++ Sbjct: 114 DHCLQGGRLAPWARQALSLVGDPVFVERSLSGDGLHVFVRADPA-------PGWRQGGVE 166 Query: 128 ILGCGQYFVAYN 139 G + Sbjct: 167 FSSSGHFIAVTG 178 >gi|254561108|ref|YP_003068203.1| hypothetical protein METDI2682 [Methylobacterium extorquens DM4] gi|254268386|emb|CAX24341.1| hypothetical protein METDI2682 [Methylobacterium extorquens DM4] Length = 582 Score = 46.4 bits (108), Expect = 0.020, Method: Composition-based stats. Identities = 27/194 (13%), Positives = 54/194 (27%), Gaps = 27/194 (13%) Query: 500 AQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGS 559 + GG GK+ L+ + SD++ I L Sbjct: 321 HLVVVFYSKAGGPGKTEFSKLLTSPLSELRSGSTLLSDVVDKSN----------IDLFSQ 370 Query: 560 RIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNP 619 IV++ + ++ DE + K + + + R + N+ + Sbjct: 371 PIVLLDDMDKLDEKSVGAFKSVITSEYIDRRKFFKQFMVNVRQQAVFIGTANRPINELVI 430 Query: 620 DDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA--KKWFLKGVKAYISKGLDVDIPE 677 D + RR++++ F K + K W L ++ D P Sbjct: 431 DPSGHRRFLMLTF--------RHLDHKDQKKIWGTINKINWELL-WRSVSQDDEDPIEP- 480 Query: 678 VCLKAKEEERQGTD 691 + D Sbjct: 481 -----VLAYMRQED 489 >gi|282856347|ref|ZP_06265626.1| primase [Pyramidobacter piscolens W5455] gi|282585718|gb|EFB91007.1| primase [Pyramidobacter piscolens W5455] Length = 386 Score = 46.4 bits (108), Expect = 0.020, Method: Composition-based stats. Identities = 18/107 (16%), Positives = 27/107 (25%), Gaps = 11/107 (10%) Query: 32 RLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHG- 90 W + + A G F C P D+D L Sbjct: 132 DASTWSSFEAAWALYEAGKAHGVAF-CMTENDPYVFIDMDGCLNDGGRGVIPECRALVND 190 Query: 91 ------TPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGC 131 T R + I FR+ + K G +++ GC Sbjct: 191 TVREFCTYTERSVSGKGLHIVFRVADKAPFLK---GQRWGGVEMYGC 234 >gi|220930215|ref|YP_002507124.1| virulence-associated E family protein [Clostridium cellulolyticum H10] gi|220000543|gb|ACL77144.1| virulence-associated E family protein [Clostridium cellulolyticum H10] Length = 788 Score = 46.4 bits (108), Expect = 0.020, Method: Composition-based stats. Identities = 31/210 (14%), Positives = 60/210 (28%), Gaps = 22/210 (10%) Query: 482 VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQN 541 + V G K + + G G GKST G+ + + +D+ Sbjct: 484 IRKTMVAAVARIYRPGTKFDSVLILNGPQGIGKSTF---FAKLAGDWFSDSLTITDMKDK 540 Query: 542 RPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESP 601 E +L G ++ + E + + +K R +YG P Sbjct: 541 SGAE---------KLQGYWLLELGELAGMRKTDVEIVKSFISRADDKYRASYGVNVESHP 591 Query: 602 ASFTPFIVPNKHL-FVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFL 660 N F+R+ RR+ + I+ A ++ + + W Sbjct: 592 RQCVIVGSTNAESGFLRDITG--NRRF----WPVRISGNSRKKAWQMTKEEVQQI--WA- 642 Query: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGT 690 + + Y + A E+ Sbjct: 643 EALVLYEKGEKLYLEGDDVTMATSEQADAM 672 >gi|157821255|ref|NP_001101164.1| DNA-binding protein RFX5 [Rattus norvegicus] gi|149030729|gb|EDL85766.1| regulatory factor X, 5 (influences HLA class II expression) (predicted) [Rattus norvegicus] Length = 681 Score = 46.4 bits (108), Expect = 0.021, Method: Composition-based stats. Identities = 18/104 (17%), Positives = 35/104 (33%), Gaps = 10/104 (9%) Query: 670 GLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYD 729 G P + EE WI + + + S+ +Y +Y E Sbjct: 74 GDKSSEPSILSN--EEYMYA----YRWIRNHLEEHMDTCLPKQSVYDAYRKYC--ESLAC 125 Query: 730 RKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKP 773 + +ST +++ IK ++ +SK G++ K Sbjct: 126 CRPLSTANFGKIIRE--IFPDIKARRLGGRGQSKYCYSGIRRKT 167 >gi|21232433|ref|NP_638350.1| hypothetical protein XCC3002 [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|21114214|gb|AAM42274.1| phage-related protein [Xanthomonas campestris pv. campestris str. ATCC 33913] Length = 887 Score = 46.4 bits (108), Expect = 0.021, Method: Composition-based stats. Identities = 37/220 (16%), Positives = 77/220 (35%), Gaps = 26/220 (11%) Query: 458 TPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIH----IRGVGGSG 513 ++L + F + ++ T G +A G G+G Sbjct: 503 IQRDPEAFRMDWLPWLWQCFGTHGMVA-MTFWFGSLFAEQIRAGHKSFPFLEATGEAGAG 561 Query: 514 KSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVII----SETNE 569 K+TL+ + G ++ + +AG+A ++ ++ G +V++ SE ++ Sbjct: 562 KTTLLTFLWKLLGR-----SDYEGFDPAKSSKAGRAR-AMGQISGMPVVLLEADRSEPDK 615 Query: 570 --NDEINAAKIKQMTGGDCMTAR--LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625 ++K GG + R N GN E P T I N + + +A Sbjct: 616 AHAKTFEWDELKDFFGGGTLATRGVRNGGNDTYEPPFRGTIVISQNAAV---DASEAILT 672 Query: 626 RYIVIPFDKPIANRDASFAQK----LETKYTLEAKKWFLK 661 R + + F +P ++ A L+ + ++ Sbjct: 673 RIVKLHFKRPQVTTESRIAADNLNALQVEELSHFLIKAVR 712 >gi|327288722|ref|XP_003229075.1| PREDICTED: hypothetical protein LOC100556550 [Anolis carolinensis] Length = 669 Score = 46.4 bits (108), Expect = 0.021, Method: Composition-based stats. Identities = 12/78 (15%), Positives = 28/78 (35%), Gaps = 5/78 (6%) Query: 696 WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755 WI + + + + +Y Y + N + +S +++ IK + Sbjct: 98 WIQNHLEEYPDTCLPKQDVYDAYKRYCD---NLCCRSLSAANFGKIMRE--IFPNIKARR 152 Query: 756 IEKEWKSKRIIKGLKLKP 773 + +SK G++ K Sbjct: 153 LGGRGQSKYCYSGIRRKT 170 >gi|257076832|ref|ZP_05571193.1| hypothetical protein Faci_07211 [Ferroplasma acidarmanus fer1] Length = 324 Score = 46.4 bits (108), Expect = 0.021, Method: Composition-based stats. Identities = 27/188 (14%), Positives = 44/188 (23%), Gaps = 21/188 (11%) Query: 18 FKLIPLRLGDKRPQRLGKWE---EQLLSSEKIDKL--PACGFGFVCGVGEQPLYAFDIDS 72 + I + DK P W+ SSEKI +G + D D Sbjct: 48 IRAILVSPHDKIPFEHA-WQSSCNYPASSEKIHNYLLKGGNWGLM--HPAGMSIGIDED- 103 Query: 73 KDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCG 132 ++ L T G F + E + + I G G Sbjct: 104 -----NEKIRNAALSLGDTARFNTGTPGHFCDLFLIKDEPVGNIPLIDGAY----IRGKG 154 Query: 133 QYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSII 192 + Y + V + E +E + + D K Sbjct: 155 GQNLGPGSIHPNGNIY---GSIYLHLVPPVVVTKSELLEVFKPYIKGKEKLSKNDSKPEY 211 Query: 193 PSKTWTNN 200 + Sbjct: 212 KQPLNPYS 219 >gi|123184648|ref|XP_001281150.1| hypothetical protein [Trichomonas vaginalis G3] gi|121835143|gb|EAX68220.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 174 Score = 46.4 bits (108), Expect = 0.021, Method: Composition-based stats. Identities = 26/170 (15%), Positives = 51/170 (30%), Gaps = 15/170 (8%) Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637 +K + Y + + + N D RRY+V+ Sbjct: 3 LKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESSD---RRYVVVR-TSDSH 58 Query: 638 NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQA- 695 +D + L T + + IP + ++ + + Sbjct: 59 MQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIP--HTEERQTLLEANKSVYEL 116 Query: 696 WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK 745 +ID+ + + + SL SY +Y ++ Y S RT N+K Sbjct: 117 FIDE----TDFVSLDERSLYDSYKQYCQE---YGYMTASKRTFLANVKSL 159 >gi|213159302|ref|YP_002321345.1| dnahel [Oryctes rhinoceros virus] gi|202073488|gb|ACH96164.1| dnahel [Oryctes rhinoceros virus] Length = 1240 Score = 46.0 bits (107), Expect = 0.022, Method: Composition-based stats. Identities = 31/153 (20%), Positives = 54/153 (35%), Gaps = 24/153 (15%) Query: 473 VSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532 +S F+ E V++Y VG + N ++ + I+G G +GKS I Sbjct: 855 MSANFKPETVVNYL-TAVGATFIPINVLKKLLLIQGDGNTGKSLACKKITSI-------- 905 Query: 533 AEASDIMQNRPPEAGKANPSLIRLMGSRIVIISE----TNENDEINAAKIKQMTGGDCMT 588 + I + R + NE ++N +++K +TG D + Sbjct: 906 -----------AQPSAGRFEDISAVMKRASVAEYSAVVLNEAYKLNPSQLKIITGNDDTS 954 Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDD 621 + Y Y F N H+ + DD Sbjct: 955 VSIFYSQKYELQQMQTIMFGATNVHVSFKGTDD 987 >gi|123162807|ref|XP_001279043.1| hypothetical protein [Trichomonas vaginalis G3] gi|121827537|gb|EAX66113.1| hypothetical protein TVAG_557900 [Trichomonas vaginalis G3] Length = 173 Score = 46.0 bits (107), Expect = 0.022, Method: Composition-based stats. Identities = 28/174 (16%), Positives = 50/174 (28%), Gaps = 23/174 (13%) Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637 +K + Y + + + N D RRY+V+ Sbjct: 2 LKSLITDKVGVVERKYKDQRVCENVANFIMVSNNVVPMKLESSD---RRYVVVR-TSEAH 57 Query: 638 NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQA- 695 +D + L T + + IP + ++ + + Sbjct: 58 MQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPHT--EERQTLLEANKSVYEL 115 Query: 696 WID----DCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK 745 +ID +C D SL SY +Y ++ Y S RT N+K Sbjct: 116 FIDETNFECLDE--------RSLYDSYKQYCQE---YGYMAASKRTFLANVKSL 158 >gi|2911554|emb|CAA75458.1| E1 protein [Human papillomavirus type 76] Length = 609 Score = 46.0 bits (107), Expect = 0.022, Method: Composition-based stats. Identities = 45/352 (12%), Positives = 99/352 (28%), Gaps = 51/352 (14%) Query: 333 WYKKDKNNVYIWSLTL--DKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTD 390 WYK ++ T + +++ + + FDLSE + + Sbjct: 279 WYKGSMDSSVYAHGTYPDWIVNQTMLTHQAAAEAVQFDLSEMIQWAYDTDLTDEADIAYG 338 Query: 391 YRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKEL 450 Y + +++ A + +A + + G+ + Sbjct: 339 YAKMAESDSNARAWLAHNSQAKFVRE--------------CAQMVRHYRRGEMRDMSISE 384 Query: 451 YITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDY--FTRCVGMALLGGNKAQRFIHIRG 508 +I EG E + + + +++ F L G K + G Sbjct: 385 WIHYRIEQVEGEG-HWSEIVKFIR-----YQGINFILFLDAFKQFLHGKPKKSCLLI-YG 437 Query: 509 VGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISET- 567 GKS + + + A K+ L L +I ++ + Sbjct: 438 PPDCGKSMFAMSLIRVLRGRVISFVNA------------KSQFWLSPLAECKIGLLDDAT 485 Query: 568 -NENDEINAAKIKQMTGGDCMTARLNYGNT-YSESPASFTPFIVPNKHLFVRNPDDAWWR 625 I+ ++ G+ ++ + P I N ++ + + Sbjct: 486 DPCWQYIDT-YLRNGIDGNIVSVDCKHKTPLQIRFPP---LLITSNYNIKDNDKYRYLYS 541 Query: 626 RYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPE 677 R ++ F ++ + L T W K + LD+ PE Sbjct: 542 RIVIFEFKHKFPFKEDGSPEFLLTDQ-----SW--KSFFKRLWNQLDLSDPE 586 >gi|298241727|ref|ZP_06965534.1| Bifunctional DNA primase/polymerase [Ktedonobacter racemifer DSM 44963] gi|297554781|gb|EFH88645.1| Bifunctional DNA primase/polymerase [Ktedonobacter racemifer DSM 44963] Length = 605 Score = 46.0 bits (107), Expect = 0.023, Method: Composition-based stats. Identities = 22/170 (12%), Positives = 44/170 (25%), Gaps = 19/170 (11%) Query: 67 AFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIP----FRMNKEGIKKKKTTEST 122 D D + ++T + L +P V+ G + + + K K+ + Sbjct: 1 MLDFDGEAG------QETRKRLGLSPHVQTGSGGAHVYLEHPGWLVPTLNSKSKRELGAR 54 Query: 123 QGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITV 182 LDI Y Y W P + P + L T Sbjct: 55 WPGLDIRADDGYAAFCGE--SESGPYLWLRDPQLDPLGCLPEELRAFLNLLQPPVSASTT 112 Query: 183 PLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPV 232 + + ++ T+ + G+ + W+ Sbjct: 113 REGHEAGAASTARIATST-----LIERALKCIHEQGKGRNDTGF--WLVC 155 >gi|123176736|ref|XP_001280041.1| hypothetical protein [Trichomonas vaginalis G3] gi|121831141|gb|EAX67111.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 173 Score = 46.0 bits (107), Expect = 0.023, Method: Composition-based stats. Identities = 28/174 (16%), Positives = 49/174 (28%), Gaps = 23/174 (13%) Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637 +K + Y + + + N D RRY+V+ Sbjct: 2 LKSLITDKVGVVERKYRDQRVCENVANFVMVSNNVVPMKLESSD---RRYVVVR-TSDSH 57 Query: 638 NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQA- 695 +D + L T + IP + ++ + + Sbjct: 58 MQDTEYFDDLAETLTPNFYNHLFSYFMTLDISKFNPRQIPHT--EERQTLLEANKSVYEL 115 Query: 696 WIDD----CCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK 745 +ID+ C D SL SY +Y ++ Y S RT N+K Sbjct: 116 FIDETNFECLDE--------RSLYDSYKQYCQE---YGYMAASKRTFLANVKNL 158 >gi|126313832|ref|XP_001371486.1| PREDICTED: similar to binding regulatory factor [Monodelphis domestica] Length = 604 Score = 46.0 bits (107), Expect = 0.024, Method: Composition-based stats. Identities = 13/79 (16%), Positives = 27/79 (34%), Gaps = 4/79 (5%) Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754 WI + + + +Y Y E + +ST +++ IK Sbjct: 94 RWIRNHLEEHTATCLPKQDVYDAYRRYC--ESLACCRPLSTANFGKIIRE--IFPDIKAR 149 Query: 755 KIEKEWKSKRIIKGLKLKP 773 ++ +SK G++ K Sbjct: 150 RLGGRGQSKYCYSGIRRKT 168 >gi|91780506|ref|YP_555713.1| putative DNA replication primase [Burkholderia xenovorans LB400] gi|91693166|gb|ABE36363.1| Putative DNA replication primase [Burkholderia xenovorans LB400] Length = 644 Score = 46.0 bits (107), Expect = 0.024, Method: Composition-based stats. Identities = 13/80 (16%), Positives = 22/80 (27%), Gaps = 9/80 (11%) Query: 217 FGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEE 276 + W+ + A+ G +I WS+ Y E W + Sbjct: 15 ALAMIPAEDYATWVDMAFALKQGF--GEAGFDIWDEWSRTAHNYSERAARVTWRSAGESG 72 Query: 277 IGDTAKKRSTFTSLFYHHGK 296 T SLF+ + Sbjct: 73 G-------KTLASLFWLAQQ 85 >gi|172041091|ref|YP_001800805.1| hypothetical protein cur_1411 [Corynebacterium urealyticum DSM 7109] gi|171852395|emb|CAQ05371.1| hypothetical protein cu1411 [Corynebacterium urealyticum DSM 7109] Length = 182 Score = 46.0 bits (107), Expect = 0.025, Method: Composition-based stats. Identities = 16/133 (12%), Positives = 30/133 (22%), Gaps = 20/133 (15%) Query: 10 AKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFD 69 + G + I + W G + G L D Sbjct: 54 PRWTRAAGKRPITITGAPASTTNPSTWTRFATVENDAH-------GIMLG---DGLGCID 103 Query: 70 IDSK---DEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHL 126 +D + + + Q K L F + E +G L Sbjct: 104 LDDCFTATGELTPLAARIVAKN-PKAFIEVSQSGKGLHIFGLRPE------GPGIRRGGL 156 Query: 127 DILGCGQYFVAYN 139 ++ G++ Sbjct: 157 EVYSWGRFIRTTG 169 >gi|332374604|gb|AEE62443.1| unknown [Dendroctonus ponderosae] Length = 405 Score = 46.0 bits (107), Expect = 0.025, Method: Composition-based stats. Identities = 47/303 (15%), Positives = 92/303 (30%), Gaps = 39/303 (12%) Query: 358 FLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSI 417 + V L EE + +++ + + E + I Sbjct: 47 QRNELNAKVRMLREELMLLQEQGSYVGEVVKPMDKKKVLVKV--------HPEGKFVVDI 98 Query: 418 TS--DLLDSSSR-FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVS 474 D+ D + + ++ L K + + P E + Sbjct: 99 DKNIDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIK 158 Query: 475 GYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 +EV++ +G+A + + + G G+GK+ L + + Sbjct: 159 EI---KEVIELPVKHPELFDALGIA------QPKGVLLYGPPGTGKTLLARAVAH-HTEC 208 Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588 I S+++Q E + L + I +E D I +++I+ +GGD Sbjct: 209 TFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEV 268 Query: 589 AR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR--RY-IVIPFDKPIANRDA 641 R L E+ + + N+ + D A R R I F P N +A Sbjct: 269 QRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DPALLRPGRIDRKIEF--PPPNEEA 323 Query: 642 SFA 644 Sbjct: 324 RLD 326 >gi|270013070|gb|EFA09518.1| hypothetical protein TcasGA2_TC011620 [Tribolium castaneum] Length = 441 Score = 46.0 bits (107), Expect = 0.025, Method: Composition-based stats. Identities = 47/303 (15%), Positives = 92/303 (30%), Gaps = 39/303 (12%) Query: 358 FLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSI 417 + V L EE + +++ + + E + I Sbjct: 83 QRNELNAKVRMLREELMLLQEQGSYVGEVVKPMDKKKVLVKV--------HPEGKFVVDI 134 Query: 418 TS--DLLDSSSR-FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVS 474 D+ D + + ++ L K + + P E + Sbjct: 135 DKNIDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIK 194 Query: 475 GYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 +EV++ +G+A + + + G G+GK+ L + + Sbjct: 195 EI---KEVIELPVKHPELFDALGIA------QPKGVLLYGPPGTGKTLLARAVAH-HTEC 244 Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588 I S+++Q E + L + I +E D I +++I+ +GGD Sbjct: 245 TFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEV 304 Query: 589 AR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR--RY-IVIPFDKPIANRDA 641 R L E+ + + N+ + D A R R I F P N +A Sbjct: 305 QRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DPALLRPGRIDRKIEF--PPPNEEA 359 Query: 642 SFA 644 Sbjct: 360 RLD 362 >gi|148706811|gb|EDL38758.1| mCG13706, isoform CRA_c [Mus musculus] Length = 633 Score = 46.0 bits (107), Expect = 0.025, Method: Composition-based stats. Identities = 21/140 (15%), Positives = 42/140 (30%), Gaps = 25/140 (17%) Query: 634 KPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTY 693 + ++ D L+ G P L + EE Sbjct: 28 QKFSDNDK-LYLYLQLPSGPSV--------------GEKSSEP--SLLSNEEYMYA---- 66 Query: 694 QAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKR 753 WI + + + S+ +Y +Y E + +ST +++ IK Sbjct: 67 YRWIRNHLEEHMDTCLPKQSVYDAYRKYC--ESLACCRPLSTANFGKIIRE--IFPDIKA 122 Query: 754 EKIEKEWKSKRIIKGLKLKP 773 ++ +SK G++ K Sbjct: 123 RRLGGRGQSKYCYSGIRRKT 142 >gi|91091360|ref|XP_972551.1| PREDICTED: similar to GA13327-PA [Tribolium castaneum] Length = 404 Score = 46.0 bits (107), Expect = 0.025, Method: Composition-based stats. Identities = 47/303 (15%), Positives = 92/303 (30%), Gaps = 39/303 (12%) Query: 358 FLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSI 417 + V L EE + +++ + + E + I Sbjct: 46 QRNELNAKVRMLREELMLLQEQGSYVGEVVKPMDKKKVLVKV--------HPEGKFVVDI 97 Query: 418 TS--DLLDSSSR-FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVS 474 D+ D + + ++ L K + + P E + Sbjct: 98 DKNIDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIK 157 Query: 475 GYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 +EV++ +G+A + + + G G+GK+ L + + Sbjct: 158 EI---KEVIELPVKHPELFDALGIA------QPKGVLLYGPPGTGKTLLARAVAH-HTEC 207 Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588 I S+++Q E + L + I +E D I +++I+ +GGD Sbjct: 208 TFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEV 267 Query: 589 AR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR--RY-IVIPFDKPIANRDA 641 R L E+ + + N+ + D A R R I F P N +A Sbjct: 268 QRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DPALLRPGRIDRKIEF--PPPNEEA 322 Query: 642 SFA 644 Sbjct: 323 RLD 325 >gi|49900129|gb|AAH75717.1| Rfx5 protein [Mus musculus] Length = 303 Score = 46.0 bits (107), Expect = 0.025, Method: Composition-based stats. Identities = 21/140 (15%), Positives = 42/140 (30%), Gaps = 25/140 (17%) Query: 634 KPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTY 693 + ++ D L+ G P L + EE Sbjct: 53 QKFSDNDK-LYLYLQLPSGPSV--------------GEKSSEP--SLLSNEEYMYA---- 91 Query: 694 QAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKR 753 WI + + + S+ +Y +Y E + +ST +++ IK Sbjct: 92 YRWIRNHLEEHMDTCLPKQSVYDAYRKYC--ESLACCRPLSTANFGKIIRE--IFPDIKA 147 Query: 754 EKIEKEWKSKRIIKGLKLKP 773 ++ +SK G++ K Sbjct: 148 RRLGGRGQSKYCYSGIRRKT 167 >gi|7716046|gb|AAF68260.1| regulator factor X 5 [Mus musculus] gi|111600343|gb|AAI18949.1| Regulatory factor X, 5 (influences HLA class II expression) [Mus musculus] gi|111600347|gb|AAI18950.1| Regulatory factor X, 5 (influences HLA class II expression) [Mus musculus] Length = 658 Score = 46.0 bits (107), Expect = 0.025, Method: Composition-based stats. Identities = 21/140 (15%), Positives = 42/140 (30%), Gaps = 25/140 (17%) Query: 634 KPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTY 693 + ++ D L+ G P L + EE Sbjct: 53 QKFSDNDK-LYLYLQLPSGPSV--------------GEKSSEP--SLLSNEEYMYA---- 91 Query: 694 QAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKR 753 WI + + + S+ +Y +Y E + +ST +++ IK Sbjct: 92 YRWIRNHLEEHMDTCLPKQSVYDAYRKYC--ESLACCRPLSTANFGKIIRE--IFPDIKA 147 Query: 754 EKIEKEWKSKRIIKGLKLKP 773 ++ +SK G++ K Sbjct: 148 RRLGGRGQSKYCYSGIRRKT 167 >gi|71037397|ref|NP_059091.2| regulatory factor X, 5 [Mus musculus] gi|148706809|gb|EDL38756.1| mCG13706, isoform CRA_a [Mus musculus] Length = 658 Score = 46.0 bits (107), Expect = 0.025, Method: Composition-based stats. Identities = 21/140 (15%), Positives = 42/140 (30%), Gaps = 25/140 (17%) Query: 634 KPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTY 693 + ++ D L+ G P L + EE Sbjct: 53 QKFSDNDK-LYLYLQLPSGPSV--------------GEKSSEP--SLLSNEEYMYA---- 91 Query: 694 QAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKR 753 WI + + + S+ +Y +Y E + +ST +++ IK Sbjct: 92 YRWIRNHLEEHMDTCLPKQSVYDAYRKYC--ESLACCRPLSTANFGKIIRE--IFPDIKA 147 Query: 754 EKIEKEWKSKRIIKGLKLKP 773 ++ +SK G++ K Sbjct: 148 RRLGGRGQSKYCYSGIRRKT 167 >gi|291234361|ref|XP_002737118.1| PREDICTED: predicted protein-like [Saccoglossus kowalevskii] Length = 679 Score = 46.0 bits (107), Expect = 0.025, Method: Composition-based stats. Identities = 14/88 (15%), Positives = 26/88 (29%), Gaps = 5/88 (5%) Query: 687 RQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746 R WI + ++ H + + Y + E + +S K Sbjct: 45 RAEQTHAFNWIRSHLEESQSTSLPKHEVYEDYRSFCESSNHS---VLSAADFGK--IIKC 99 Query: 747 FIGGIKREKIEKEWKSKRIIKGLKLKPA 774 IK ++ SK G++ K Sbjct: 100 VFPTIKARRLGTRGNSKYCYSGIRKKSE 127 >gi|170736572|ref|YP_001777832.1| primase 2 [Burkholderia cenocepacia MC0-3] gi|169818760|gb|ACA93342.1| Primase 2 [Burkholderia cenocepacia MC0-3] Length = 615 Score = 46.0 bits (107), Expect = 0.026, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 18/55 (32%), Gaps = 2/55 (3%) Query: 217 FGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDT 271 + W+ + AV H G E+ WS+ YD + W + Sbjct: 15 ALATIPADDYTTWVDMAFAVKH--GLGEAGFELWDAWSQTAPNYDARSARATWRS 67 >gi|116691425|ref|YP_836958.1| hypothetical protein Bcen2424_3324 [Burkholderia cenocepacia HI2424] gi|116649425|gb|ABK10065.1| conserved hypothetical protein [Burkholderia cenocepacia HI2424] Length = 615 Score = 46.0 bits (107), Expect = 0.026, Method: Composition-based stats. Identities = 11/55 (20%), Positives = 18/55 (32%), Gaps = 2/55 (3%) Query: 217 FGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDT 271 + W+ + AV H G E+ WS+ YD + W + Sbjct: 15 ALATIPADDYTTWVDMAFAVKH--GLGEAGFELWDAWSQTAPNYDARSARATWRS 67 >gi|261363790|ref|ZP_05976673.1| inner membrane protein [Neisseria mucosa ATCC 25996] gi|288568370|gb|EFC89930.1| inner membrane protein [Neisseria mucosa ATCC 25996] Length = 805 Score = 46.0 bits (107), Expect = 0.028, Method: Composition-based stats. Identities = 10/62 (16%), Positives = 21/62 (33%), Gaps = 2/62 (3%) Query: 211 TAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWD 270 + D W+ ++ HE + ++ RWS+Q +Y + W Sbjct: 4 RDEIEKALSYIEPHDRDVWVNTAYSLKHEL--GEEAFDMWDRWSQQSDSYRSRDARSVWK 61 Query: 271 TF 272 + Sbjct: 62 SI 63 >gi|268571361|ref|XP_002641019.1| C. briggsae CBR-RPT-6 protein [Caenorhabditis briggsae] gi|187030024|emb|CAP30811.1| CBR-RPT-6 protein [Caenorhabditis briggsae AF16] Length = 417 Score = 46.0 bits (107), Expect = 0.028, Method: Composition-based stats. Identities = 48/329 (14%), Positives = 96/329 (29%), Gaps = 47/329 (14%) Query: 362 MKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDL 421 +++ ++ + + N + + Q E GS S Sbjct: 31 LRKYFRTKVDDAQQKVADKSQNVRRLQAQRNELNTKVRMLKEELQQLHEQGSYVGEVSKA 90 Query: 422 LDSSSRFLGE-QDGILDLETGQKVK-----------------------PTKELYITKSTG 457 +D + +G ++ + + P K + Sbjct: 91 MDKKKVLVKVHPEGKYVVDVDKTIDINSLNTGARVALRADSYALHKVLPNKVDPLVSLMM 150 Query: 458 TPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGVGG 511 V + L E +EV++ +G+A + + + G G Sbjct: 151 VEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIA------QPKGVLLYGPPG 204 Query: 512 SGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEND 571 +GK+ L + + I S+++Q E + L + I +E D Sbjct: 205 TGKTLLARAVAH-HTECTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEID 263 Query: 572 EINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR-- 625 I +++++ +GGD R L E+ + + N+ + D A R Sbjct: 264 SIGSSRVEGSSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DPALLRPG 320 Query: 626 RY-IVIPFDKPIANRDASFAQKLETKYTL 653 R I F P A + K L Sbjct: 321 RIDRKIEFPAPDEKARADILKIHSRKMNL 349 >gi|134299059|ref|YP_001112555.1| virulence-associated E family protein [Desulfotomaculum reducens MI-1] gi|134051759|gb|ABO49730.1| virulence-associated E family protein [Desulfotomaculum reducens MI-1] Length = 818 Score = 45.6 bits (106), Expect = 0.028, Method: Composition-based stats. Identities = 33/177 (18%), Positives = 53/177 (29%), Gaps = 20/177 (11%) Query: 461 VEGEPSQEFLDLVSGYFESEEVM-------DYFTRCVGMALLGGNKAQRFIHIRGVGGSG 513 E + +++ Y +E+ + F V + G K + + G G G Sbjct: 479 DEWDGIPRLEEVLIDYLGAEDSVYTRAVTKKTFVAAVARVMNPGCKFDYMLVLIGKQGLG 538 Query: 514 KSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI 573 KSTL GN + + SD+ E +L G I+ I E + Sbjct: 539 KSTL---FTRLAGNWFNDSLSMSDMRDKTAAE---------KLQGYWILEIGELAGFKKA 586 Query: 574 NAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVI 630 +K R +YG E P N RR+ + Sbjct: 587 EVEVVKSFLSRQKDIYRPSYGRRTIEYPRQCVIVGSTNNDTGFLRDSTG-NRRFWPV 642 >gi|134085431|ref|NP_001076812.1| regulatory factor X, 5 (influences HLA class II expression) [Xenopus (Silurana) tropicalis] gi|134024343|gb|AAI35605.1| rfx5 protein [Xenopus (Silurana) tropicalis] Length = 564 Score = 45.6 bits (106), Expect = 0.029, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 28/78 (35%), Gaps = 5/78 (6%) Query: 696 WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755 WI + + + + +Y Y + N + +S +++ IK + Sbjct: 88 WIRNHLEEHTDTCLPKQDVYDAYKRYCD---NLHGRPLSVANFGKIIRE--IFPNIKARR 142 Query: 756 IEKEWKSKRIIKGLKLKP 773 + +SK GL+ K Sbjct: 143 LGGRGQSKYCYSGLRRKS 160 >gi|40675343|gb|AAH64876.1| rfx5 protein [Xenopus (Silurana) tropicalis] Length = 557 Score = 45.6 bits (106), Expect = 0.029, Method: Composition-based stats. Identities = 13/78 (16%), Positives = 28/78 (35%), Gaps = 5/78 (6%) Query: 696 WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755 WI + + + + +Y Y + N + +S +++ IK + Sbjct: 129 WIRNHLEEHTDTCLPKQDVYDAYKRYCD---NLHGRPLSVANFGKIIRE--IFPNIKARR 183 Query: 756 IEKEWKSKRIIKGLKLKP 773 + +SK GL+ K Sbjct: 184 LGGRGQSKYCYSGLRRKS 201 >gi|237642071|ref|YP_002887625.1| nonstructural protein NS-1 [Culex pipiens densovirus] gi|229554367|gb|ACQ76570.1| nonstructural protein NS-1 [Culex pipiens densovirus] Length = 548 Score = 45.6 bits (106), Expect = 0.029, Method: Composition-based stats. Identities = 58/480 (12%), Positives = 127/480 (26%), Gaps = 46/480 (9%) Query: 168 EDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITA-FLSCFGEEFYNGSH 226 E E L K +E+ ++ TW ++ + E A F E+ Sbjct: 71 EAYEDLAKEIEEMGDIFIRYVTGKNIKNTWRYLSDVFFPRGESNANFAMERLREYGRSRR 130 Query: 227 DE---WIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKK 283 D +I +H + G + K Y +F + Sbjct: 131 DRMFGFINEGDHIHIIHDCAYSGGHCRDVFRKHLEPYG---------SFGPARPENKPIW 181 Query: 284 RSTFTSLFYHHGKLIPKGLLASRFS---DAYNKAMFSIYKKGHFLYTADTKAWY----KK 336 + T T + + L + ++ + W ++ Sbjct: 182 KFTTTDWYDVFQYFFLRKLRNGNDTGEIYIGGESWKKPSNDQLVRWEKKLGTWRPLVRQQ 241 Query: 337 DKNNVYIWSLTLDKITA---SIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR 393 D + + + K + + F + + + ++ Sbjct: 242 DNGDHLLDQRSGLKRSNREVAGTPFDEVYGKKTKSSGKYAAIKQETKALLLKYYPCPLSA 301 Query: 394 QNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYIT 453 + + + + I ++ G Y Sbjct: 302 IRDVSEFRNNNLLSDPKNREYIDAAFVDFGKDVNQM-TIRQIYEILKGHT---DPIFYAG 357 Query: 454 KSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSG 513 T ++FL + +++E + F + L Q + SG Sbjct: 358 MEYATQEESFAILEDFLKF--QFEDNDEKITQFLVDLIDVLDKRVPKQNAFAVISPPSSG 415 Query: 514 KSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI 573 K+ ++I N + +A + N + ++ +++ + Sbjct: 416 KNFFFDMIMAICLNY------------GQLGQANRHNLFAFQEAPNKRLLLWNEPNYESA 463 Query: 574 NAAKIKQMTGGDCMTARLNY-GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF 632 IK M GGD T R+ Y G+T+ + N F++ A+ R V + Sbjct: 464 MTDTIKMMMGGDPYTVRVKYQGDTHVTRTP--VLILTNNYVSFLQES--AFKDRIKVYKW 519 >gi|156407884|ref|XP_001641587.1| predicted protein [Nematostella vectensis] gi|156228726|gb|EDO49524.1| predicted protein [Nematostella vectensis] Length = 398 Score = 45.6 bits (106), Expect = 0.029, Method: Composition-based stats. Identities = 42/309 (13%), Positives = 89/309 (28%), Gaps = 31/309 (10%) Query: 358 FLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSI 417 + V L EE + + +++ + + ++ G + Sbjct: 40 QRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDIDKGIDMAE 99 Query: 418 TSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF 477 + + ++ L K + + P E + Sbjct: 100 VTPNC-----RVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEI- 153 Query: 478 ESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVI 531 +EV++ +G + + + G G+GK+ L + + I Sbjct: 154 --KEVIELPVKHPELFEALG------IDQPKGVLLYGPPGTGKTLLARAVAH-HTECTFI 204 Query: 532 NAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR- 590 S+++Q E + L + I +E D I +++++ +GGD R Sbjct: 205 RVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRT 264 Query: 591 ---LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR--RY-IVIPFDKPIANRDASFA 644 L E+ + + N+ + D A R R I F P Sbjct: 265 MLELLNQLDGFEATKNIKVIMATNRIDIL---DSALLRPGRIDRKIEFPPPNEEARQDIL 321 Query: 645 QKLETKYTL 653 + K L Sbjct: 322 KIHSRKMNL 330 >gi|241952094|ref|XP_002418769.1| 26S protease regulatory subunit, putative [Candida dubliniensis CD36] gi|223642108|emb|CAX44074.1| 26S protease regulatory subunit, putative [Candida dubliniensis CD36] Length = 463 Score = 45.6 bits (106), Expect = 0.030, Method: Composition-based stats. Identities = 50/361 (13%), Positives = 105/361 (29%), Gaps = 29/361 (8%) Query: 288 TSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLT 347 TS+ SR D + Y + ++ + Sbjct: 33 TSISKSGKLKKFFPFSQSRVQDLIIHHHQEMTTSIDKPYVHEGGIRPYFEQ--QIQDTEI 90 Query: 348 LDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQ 407 + T + L + + + + + +D + + P + + +++ Sbjct: 91 RIQQTTQNLRRLEAQRNKLNNKVRQLKDELRLLQEPGSYVGEVVKVMGLKKVLVKIHPEG 150 Query: 408 SLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ 467 I L + S + + DL K + + P + Sbjct: 151 KFIVNVTKDIDVKKL-TPSIRVCLKADSHDLYKILPNKIDPLVSLMMVEKVPDSTYDMVG 209 Query: 468 EFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLI 521 + +EV++ +G+A + + + G G+GK+ L + Sbjct: 210 GLDKQIKEI---KEVIELPVKHPELFESLGIA------QPKGVILYGPPGTGKTLLARAV 260 Query: 522 KYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM 581 + I S+++Q E + L + I +E D I +++++ Sbjct: 261 AH-HTECKFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVEGS 319 Query: 582 TGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR--RY-IVIPFDK 634 +GGD R L ES + N+ + D A R R I F Sbjct: 320 SGGDSEVQRTMLELLNQLDGFESSKDIKIIMATNRLDIL---DPALLRPGRIDRKIEFPA 376 Query: 635 P 635 P Sbjct: 377 P 377 >gi|313576841|gb|ADR67016.1| bacteriophage P4 DNA primase [Klebsiella pneumoniae subsp. pneumoniae] Length = 182 Score = 45.6 bits (106), Expect = 0.031, Method: Composition-based stats. Identities = 21/176 (11%), Positives = 47/176 (26%), Gaps = 43/176 (24%) Query: 614 LFVRNPDDAWWRRYIVIPFDKPI--ANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGL 671 + + RR ++I F + + RD K+ + + ++ Sbjct: 1 MRFTDRSGGVSRRRVIIHFPEQVAPEERDPQLRDKIAR-ELVVIVRQLMQ---------- 49 Query: 672 DVDIPEVCLKAKEEE---------RQGTDTYQAWIDDCCDIGENLWEESH---------- 712 P + + ++ D + C E L E Sbjct: 50 QFSDPMSARALLQSQQNSDEALSIKRDADPTFDF----CGYLEALPEPDGMYMGNANIIP 105 Query: 713 -----SLAKSYSEYREQELNYDRKRIST--RTVTLNLKQKGFIGGIKREKIEKEWK 761 L +Y Y E + ++ + ++ LK+ G +R + Sbjct: 106 RQPRLYLYHAYLVYMEAHGYRNALSLTMFGKGLSAMLKEYGLNYEKRRTNQGMQTN 161 >gi|296161904|ref|ZP_06844705.1| Primase 2 [Burkholderia sp. Ch1-1] gi|295887923|gb|EFG67740.1| Primase 2 [Burkholderia sp. Ch1-1] Length = 636 Score = 45.6 bits (106), Expect = 0.031, Method: Composition-based stats. Identities = 14/73 (19%), Positives = 23/73 (31%), Gaps = 9/73 (12%) Query: 224 GSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKK 283 + W+ + A+ H G +I WS+ Y E W + Sbjct: 22 EDYATWVDMAFAIKHGF--GEAGFDIWDEWSRTAHNYSERAARVTWRSAGESGG------ 73 Query: 284 RSTFTSLFYHHGK 296 T SLF+ + Sbjct: 74 -KTLASLFWLAQQ 85 >gi|318060858|ref|NP_001188134.1| 26S protease regulatory subunit 8 [Ictalurus punctatus] gi|308323111|gb|ADO28692.1| 26S protease regulatory subunit 8 [Ictalurus punctatus] Length = 430 Score = 45.6 bits (106), Expect = 0.032, Method: Composition-based stats. Identities = 49/309 (15%), Positives = 87/309 (28%), Gaps = 28/309 (9%) Query: 345 SLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKS 404 KI + ++ E N K + V E K Sbjct: 46 DYYCWKIDELQFVVTEKTQNLRRLEAQRNELNAKVRLLREELQLLQEQGSYVGEVIKPMD 105 Query: 405 TAQSLEAGSIFSITSDLLDSSSRFLG-EQDGILDLETGQKVKP----TKELYITKSTGTP 459 + L +D + + + L +K + Sbjct: 106 KKKVLVKVQPEGKFVVDIDKNIDIASITPNCRVALRNDSYTLHKILPSKVDPLVSLMMVE 165 Query: 460 FVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGVGGSG 513 V + L E +EV++ +G+A + + + G G+G Sbjct: 166 KVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIA------QPKGVLLYGPPGTG 219 Query: 514 KSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI 573 K+ L + + I S+++Q E + L + I +E D I Sbjct: 220 KTLLARAVAH-HTECTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEVDSI 278 Query: 574 NAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR--RY 627 +A+I+ +GGD R L E + + N+ + D A R R Sbjct: 279 GSARIESGSGGDSEVQRTMLELLNQLDGFEPKQNIKVVMATNRIDIL---DSALLRPGRI 335 Query: 628 -IVIPFDKP 635 I F P Sbjct: 336 DRKIEFPAP 344 >gi|294775658|ref|ZP_06741166.1| VirE N-terminal domain protein [Bacteroides vulgatus PC510] gi|294450502|gb|EFG18994.1| VirE N-terminal domain protein [Bacteroides vulgatus PC510] Length = 698 Score = 45.6 bits (106), Expect = 0.032, Method: Composition-based stats. Identities = 26/183 (14%), Positives = 55/183 (30%), Gaps = 19/183 (10%) Query: 449 ELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRG 508 + + + +L +F ++ G + + G Sbjct: 412 WDGRDRIRPLAQTVPCDNPHWPELFHRWF-----LNMVAHWRG--MDKRYANSVSPLLVG 464 Query: 509 VGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN 568 G+ KST I ++ ++ D + + E +L + I E + Sbjct: 465 AQGTRKSTFCRSIMP--PSECSYYTDSLDFSRKKDVELSLNRFAL--------INIDEFD 514 Query: 569 ENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYI 628 + +K + + AR YG + E + N + +P + RR+I Sbjct: 515 QVSATQQGFLKHILQKPVVNARRPYGTSVVEMRRYASFIATSNHKDLLTDPSGS--RRFI 572 Query: 629 VIP 631 I Sbjct: 573 CIE 575 >gi|153955276|ref|YP_001396041.1| hypothetical protein CKL_2658 [Clostridium kluyveri DSM 555] gi|219855699|ref|YP_002472821.1| hypothetical protein CKR_2356 [Clostridium kluyveri NBRC 12016] gi|146348134|gb|EDK34670.1| Phage-related protein [Clostridium kluyveri DSM 555] gi|219569423|dbj|BAH07407.1| hypothetical protein [Clostridium kluyveri NBRC 12016] Length = 788 Score = 45.6 bits (106), Expect = 0.032, Method: Composition-based stats. Identities = 32/211 (15%), Positives = 61/211 (28%), Gaps = 24/211 (11%) Query: 482 VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQN 541 + V G K + + G G GKST G+ + + +D+ Sbjct: 484 IRKTMVAAVARIYRPGTKFDSVLILNGPQGIGKSTF---FAKLAGDWFSDSLTITDMKDK 540 Query: 542 RPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESP 601 E +L G ++ + E + + +K R +YG P Sbjct: 541 SGAE---------KLQGYWLLELGELAGMRKTDVEVVKSFISRADDKYRASYGVNVESHP 591 Query: 602 ASFTPFIVPNKHL-FVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFL 660 N F+R+ RR+ + I+ A ++ + + L Sbjct: 592 RQCVIVGSTNAESGFLRDITG--NRRF----WPVRISGNSKKKAWQMTKEEVQQIWAETL 645 Query: 661 KGVKAYISKGLDVD-IPEVCLKAKEEERQGT 690 + KG + + A E+ Sbjct: 646 E----LYEKGEKLYLEGDDVSMATSEQADAM 672 >gi|321455982|gb|EFX67100.1| hypothetical protein DAPPUDRAFT_64123 [Daphnia pulex] Length = 251 Score = 45.6 bits (106), Expect = 0.032, Method: Composition-based stats. Identities = 13/82 (15%), Positives = 26/82 (31%), Gaps = 5/82 (6%) Query: 696 WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755 WI + + + + Y Y + K +ST +KQ ++ + Sbjct: 59 WIQTHLEEDVEVSLPKQEVYEEYGGYCTEN---VIKPLSTADFGKVMKQ--VFPNVRPRR 113 Query: 756 IEKEWKSKRIIKGLKLKPAFES 777 + S+ GL+ K Sbjct: 114 LGTRGHSRYCYSGLRKKGELSP 135 >gi|57234140|ref|YP_181813.1| virulence-associated protein E, putative [Dehalococcoides ethenogenes 195] gi|57224588|gb|AAW39645.1| virulence-associated protein E, putative [Dehalococcoides ethenogenes 195] Length = 789 Score = 45.6 bits (106), Expect = 0.032, Method: Composition-based stats. Identities = 47/311 (15%), Positives = 91/311 (29%), Gaps = 44/311 (14%) Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542 V G K + G G GKST+ + + +D+ Sbjct: 494 RKTLVAAVTRIYHPGTKFDTVPVLDGAQGIGKSTMWKSLAG--DEYFSDALSLTDMDDKS 551 Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602 E +L G I+ I E + + K+K R +YG P Sbjct: 552 GAE---------KLQGFWIIEIGELAGMKKADIEKVKSFLSTSDDKYRPSYGKVVESHPR 602 Query: 603 SFTPFIVPN-KHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWF-- 659 N +H ++R+ RR+ ++ + + + K+ + + Sbjct: 603 QCVVVATVNGEHGYLRDITG--NRRFWIVKCRQT----ENAVRWKITPEERDQIWAEAKY 656 Query: 660 --LKGVKAYISKGLDVDIPEVCLKAKE-----------------EERQGTDTYQA--WID 698 +G K Y+ L + E A E E D YQ ++D Sbjct: 657 YYEQGEKLYLEGDLLAEAEEAQRSAMETDERQGLVEQYLSKLLPENWSEMDLYQRRNFLD 716 Query: 699 DCCDIGENLWEESHSLAKSYSEYREQELNY--DRKRISTRTVTLNLKQKGFIGGIKREKI 756 ++ E ++ + + E D K + + + Q R Sbjct: 717 GDDITSDSGTVERTEVSNA-EIWCECFGRNIADLKPTDSYAIAALMTQVDGWKRTNRRAS 775 Query: 757 EKEWKSKRIIK 767 + + +R+ + Sbjct: 776 QPLYGRQRLYE 786 >gi|239621741|ref|ZP_04664772.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239514932|gb|EEQ54799.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 125 Score = 45.6 bits (106), Expect = 0.033, Method: Composition-based stats. Identities = 16/120 (13%), Positives = 29/120 (24%), Gaps = 19/120 (15%) Query: 27 DKRPQRLGKWEEQLLSSEKIDKLP-------ACGFGFVCGVGEQPLYAFDIDSKDEKTAN 79 KRP + P G+G + G L +D D D + Sbjct: 13 GKRPIMCDGSPASSTDPDTWASYPEVMRSKAGDGYGIMLG---DGLACWDFDHVD--LTS 67 Query: 80 TFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYN 139 E+L + L F + E + ++ ++ Sbjct: 68 PPAKALELLPDAIYAEVSSSGHGLHVFVESSES-------SFRRAGVEFYSRSRFIRMTG 120 >gi|114331467|ref|YP_747689.1| virulence-associated E family protein [Nitrosomonas eutropha C91] gi|114308481|gb|ABI59724.1| virulence-associated E family protein [Nitrosomonas eutropha C91] Length = 408 Score = 45.6 bits (106), Expect = 0.033, Method: Composition-based stats. Identities = 51/340 (15%), Positives = 96/340 (28%), Gaps = 60/340 (17%) Query: 468 EFLDLVSGYFESEEVMDYFTRCVGMALLGGN--------KAQRFIHIRGVGGSGKSTLMN 519 D ++ + Y R L+G K + + G G GKS+L+ Sbjct: 109 RVDDWITDFIH-APKSKYVWRVARWFLVGMVARAMRPGIKFDYCLVLEGDQGRGKSSLL- 166 Query: 520 LIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIK 579 G + + + ++ S+ L G + ISE A K K Sbjct: 167 ---RVLGGGWFGDTDLDLHSKD----------SMSALRGKWLYEISELGSLARSEATKQK 213 Query: 580 QMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR 639 + R YG P N+ + ++ RR+ I I Sbjct: 214 SFFSREVDEFRPVYGAREVRCPRQLVFCGTTNEWEWNKDQTGG--RRFWPIECTGEINID 271 Query: 640 DASFAQKLETKYTLEAKKWFLKGVKAY--ISKGLDVDIPEVC-LKAKEEERQGTDTYQAW 696 + + + L G + + + +D+ PE + D + W Sbjct: 272 GLAAVRDQLFAEAYQIY---LSGERFWPTNREQIDIFNPEQFRRSVSDSYL---DMIENW 325 Query: 697 IDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKI 756 I + Y E+ ++ D +I ++ +++ + K Sbjct: 326 IAE-----------------QYKEFCIADVATDCLKIDAARLSRDVQTRIGSALRKLGCR 368 Query: 757 EKEWKS---KRIIK------GLKLKPAFESVDDNSNIIDF 787 E ++ R G K + IDF Sbjct: 369 RIEKRTHAVTRYWYKAPQEMGSGHKSGQDDAKGEDRGIDF 408 >gi|319642191|ref|ZP_07996851.1| VirE domain-containing protein [Bacteroides sp. 3_1_40A] gi|317386177|gb|EFV67096.1| VirE domain-containing protein [Bacteroides sp. 3_1_40A] Length = 698 Score = 45.6 bits (106), Expect = 0.034, Method: Composition-based stats. Identities = 26/183 (14%), Positives = 55/183 (30%), Gaps = 19/183 (10%) Query: 449 ELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRG 508 + + + +L +F ++ G + + G Sbjct: 412 WDGRDRIRPLAQTVPCDNPHWPELFHRWF-----LNMVAHWRG--MDKRYANSVSPLLVG 464 Query: 509 VGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN 568 G+ KST I ++ ++ D + + E +L + I E + Sbjct: 465 AQGTRKSTFCRSIMP--PSECSYYTDSLDFSRKKDVELSLNRFAL--------INIDEFD 514 Query: 569 ENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYI 628 + +K + + AR YG + E + N + +P + RR+I Sbjct: 515 QVSATQQGFLKHILQKPVVNARRPYGTSVVEMRRYASFIATSNHKDLLTDPSGS--RRFI 572 Query: 629 VIP 631 I Sbjct: 573 CIE 575 >gi|190572364|ref|YP_001970209.1| putative phage-like protein [Stenotrophomonas maltophilia K279a] gi|190010286|emb|CAQ43894.1| putative phage-related protein [Stenotrophomonas maltophilia K279a] Length = 898 Score = 45.6 bits (106), Expect = 0.035, Method: Composition-based stats. Identities = 34/187 (18%), Positives = 62/187 (33%), Gaps = 14/187 (7%) Query: 468 EFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIH----IRGVGGSGKSTLMNLIKY 523 E+L + F + ++ T G ++ G G+GK+TL+ + Sbjct: 523 EWLQWLWTCFGTNGMVA-LTFWFGSLFANQIRSAHKSFPFLEATGEAGAGKTTLLTFLWK 581 Query: 524 AF--GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM 581 + + S + ++ L R ++ E + +K Sbjct: 582 LLARSDYEGFDPAKSSKAGRARAMGQTSGMPVVLLEADRDAPDKAHAKSFEWDE--LKDY 639 Query: 582 TGGDCMTAR--LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR 639 GG + R N GN E P T I N + + +A R + + F KP A Sbjct: 640 YGGGTLATRGVRNGGNETYEPPFRGTIVISQNAAV---DASEAIMTRIVKLHFRKPNATT 696 Query: 640 DASFAQK 646 ++ A Sbjct: 697 ESRLAAD 703 >gi|254883672|ref|ZP_05256382.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] gi|254836465|gb|EET16774.1| conserved hypothetical protein [Bacteroides sp. 4_3_47FAA] Length = 698 Score = 45.6 bits (106), Expect = 0.035, Method: Composition-based stats. Identities = 26/183 (14%), Positives = 55/183 (30%), Gaps = 19/183 (10%) Query: 449 ELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRG 508 + + + +L +F ++ G + + G Sbjct: 412 WDGRDRIRPLAQTVPCDNPHWPELFHRWF-----LNMVAHWRG--MDKRYANSVSPLLVG 464 Query: 509 VGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETN 568 G+ KST I ++ ++ D + + E +L + I E + Sbjct: 465 AQGTRKSTFCRSIMP--PSECSYYTDSLDFSRKKDVELSLNRFAL--------INIDEFD 514 Query: 569 ENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYI 628 + +K + + AR YG + E + N + +P + RR+I Sbjct: 515 QVSATQQGFLKHILQKPVVNARRPYGTSVVEMRRYASFIATSNHKDLLTDPSGS--RRFI 572 Query: 629 VIP 631 I Sbjct: 573 CIE 575 >gi|307546785|ref|YP_003899264.1| hypothetical protein HELO_4195 [Halomonas elongata DSM 2581] gi|307218809|emb|CBV44079.1| hypothetical protein HELO_4195 [Halomonas elongata DSM 2581] Length = 345 Score = 45.6 bits (106), Expect = 0.036, Method: Composition-based stats. Identities = 11/99 (11%), Positives = 23/99 (23%), Gaps = 10/99 (10%) Query: 212 AFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDT 271 L + + W+ V A E G WS+Q +Y + W + Sbjct: 9 DELRLALQYIPADDRETWVNVGNACKTEYGDD--GFAAWDEWSQQAESYKAADAKSVWRS 66 Query: 272 FDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDA 310 ++ + ++ Sbjct: 67 --------LTPGHVRLGTIIKLAQAGGWQRERREMSAED 97 >gi|312376286|gb|EFR23420.1| hypothetical protein AND_12900 [Anopheles darlingi] Length = 192 Score = 45.6 bits (106), Expect = 0.036, Method: Composition-based stats. Identities = 13/84 (15%), Positives = 27/84 (32%), Gaps = 5/84 (5%) Query: 687 RQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746 R + W+ + N+ + Y Y + K +ST +KQ Sbjct: 84 RLEINHTINWVRSHLEHDPNVSIPKQEVYDDYVAYCA---RINIKPLSTADFGKVMKQ-- 138 Query: 747 FIGGIKREKIEKEWKSKRIIKGLK 770 GI+ ++ S+ ++ Sbjct: 139 VFPGIRPRRLGTRGHSRYCYAAMR 162 >gi|300022615|ref|YP_003755226.1| hypothetical protein Hden_1091 [Hyphomicrobium denitrificans ATCC 51888] gi|299524436|gb|ADJ22905.1| hypothetical protein Hden_1091 [Hyphomicrobium denitrificans ATCC 51888] Length = 442 Score = 45.6 bits (106), Expect = 0.036, Method: Composition-based stats. Identities = 10/86 (11%), Positives = 33/86 (38%), Gaps = 12/86 (13%) Query: 689 GTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFI 748 +T + + + ++ + + L + Y + + + +++ + + + G Sbjct: 352 ENNT-ERFYKENVEVRDGSSVTATELYEDYCSWCDSK---NKEPAALPSFAREFAELG-- 405 Query: 749 GGIKREKIEKEWKSKRIIKGLKLKPA 774 +K+EK+ + G+ LK Sbjct: 406 --VKKEKVAGRVR----YIGIALKSD 425 >gi|294789713|ref|ZP_06754945.1| primase C 2 (PriCT-2) superfamily [Simonsiella muelleri ATCC 29453] gi|294482350|gb|EFG30045.1| primase C 2 (PriCT-2) superfamily [Simonsiella muelleri ATCC 29453] Length = 987 Score = 45.6 bits (106), Expect = 0.037, Method: Composition-based stats. Identities = 17/111 (15%), Positives = 31/111 (27%), Gaps = 14/111 (12%) Query: 225 SHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTF------------ 272 + W + A+ E G E+ WS+Q Y +++ W + Sbjct: 18 DRETWFRMGAAIKDEL--GENGFEMWDNWSRQSDNYKQQDAQSVWKSIKVGHIHIASLFK 75 Query: 273 DFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGH 323 E G +K T S + + +A K + Sbjct: 76 TARENGYRPEKPYTPPSAEELAKRSQIAQEKQQAEAKRIAQAHAKAEKTAY 126 >gi|1742981|emb|CAA71181.1| helicase [Bombyx mori NPV] Length = 1222 Score = 45.3 bits (105), Expect = 0.037, Method: Composition-based stats. Identities = 45/362 (12%), Positives = 110/362 (30%), Gaps = 39/362 (10%) Query: 279 DTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDK 338 D + + L + LI + + F F + Y Sbjct: 715 DMFGNDAELSKLIWM---LIFTNKTYVSTTLIRTNSEFVNQHGEFFFKEHNKIIQYLYQT 771 Query: 339 NNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEE 398 + + L FL +++DV + ++ +F+ + +++ Sbjct: 772 IHKIEYVDMLMDKFNDKRLFLTELRDDVAREPDV--QFEESDNICKFYTHHTDALIILKK 829 Query: 399 NSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGT 458 + I + ++D L + I+ + + + G Sbjct: 830 YNVWWD-------KIILARSTDDLPT--WLTRFYMRII-MSKMDLKEYSYNYLKKIVEGY 879 Query: 459 PFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTL 517 + F + + +L + + ++ I++ G GSGKS+ Sbjct: 880 LY--------FKRFTNFNHANA----IMLMHFAASLAIPVDYGKKAIYMPGEPGSGKSSF 927 Query: 518 MNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIV-IISETNENDEINAA 576 L+ Y + +G++N S++ + NE + + + Sbjct: 928 FELLDYLV----------LMHKFDDDNHSGESNKETSDKEVSKLNSQLYVINELKQCSES 977 Query: 577 KIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI 636 K+ ++ + A++ IV NK L+V + DD R++++ + Sbjct: 978 YFKKHADTSKSDSKSRKYQGLLKYEANYKMLIVNNKPLYVDDYDDGVQDRFLIVYTNHKF 1037 Query: 637 AN 638 + Sbjct: 1038 VD 1039 >gi|126135282|ref|XP_001384165.1| protease regulatory subunit 8 homolog (SUG1 protein) (CIM3 protein) (TAT-binding protein TBY1) [Scheffersomyces stipitis CBS 6054] gi|126091363|gb|ABN66136.1| protease regulatory subunit 8 homolog (SUG1 protein) (CIM3 protein) (TAT-binding protein TBY1) [Scheffersomyces stipitis CBS 6054] Length = 402 Score = 45.3 bits (105), Expect = 0.038, Method: Composition-based stats. Identities = 45/323 (13%), Positives = 98/323 (30%), Gaps = 29/323 (8%) Query: 326 YTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRF 385 Y + ++ + + T + L + + + + + +D + + P Sbjct: 10 YVHEGGIRPYFEQ--QIQDTEIKIQQTTQNLRRLEAQRNKLNNKVRQLKDELRLLQEPGS 67 Query: 386 WFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVK 445 + + +++ I L + S + + DL K Sbjct: 68 YVGEVVKVMGLKKVLVKIHPEGKYIVNVTKDIDIKKL-TPSIRVCLKSDSYDLHKILPNK 126 Query: 446 PTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNK 499 + + P + + +EV++ +G+A Sbjct: 127 VDPLVSLMMVEKVPDSTYDMVGGLDKQIKEI---KEVIELPVKHPELFESLGIA------ 177 Query: 500 AQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGS 559 + + + G G+GK+ L + + I S+++Q E + L + Sbjct: 178 QPKGVILYGPPGTGKTLLARAVAH-HTECKFIRVSGSELVQKYIGEGSRMVRELFVMARE 236 Query: 560 RIVIISETNENDEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLF 615 I +E D I +++++ +GGD R L ES + N+ Sbjct: 237 HAPSIIFMDEIDSIGSSRVEGSSGGDSEVQRTMLELLNQLDGFESSKDIKIIMATNRLDI 296 Query: 616 VRNPDDAWWR--RY-IVIPFDKP 635 + D A R R I F P Sbjct: 297 L---DPALLRPGRIDRKIEFPAP 316 >gi|187939544|gb|ACD38692.1| hypothetical phage protein [Pseudomonas aeruginosa] Length = 894 Score = 45.3 bits (105), Expect = 0.039, Method: Composition-based stats. Identities = 57/479 (11%), Positives = 126/479 (26%), Gaps = 64/479 (13%) Query: 183 PLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRG 242 + + W + + R + + ++ H+ + + + Sbjct: 245 EAAQLPQRNNRKFDWNDLHQRWMFIDDAAERAAKIEKDLKTARHEGALLIAES----PAE 300 Query: 243 SSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGL 302 + + + F +K D F+ + + + K L Sbjct: 301 KALLMYEWTNRGEFHFRFGNRLFWFKLDLEKFDRAMRAFENSDDHEDKLLNDRQKRDKAL 360 Query: 303 L-ASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVS 361 + + N ++Y ++WY +D+ + + Sbjct: 361 QQSGNVVEIANCFPQALY---FQRNEVTDESWYYFR----------IDRPDDESVKNTFT 407 Query: 362 MKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDL 421 + S+ + ++ + G T D Sbjct: 408 SAQVAAA-----------SEFKKRLLGVAAGAIFTGSGAQLDQIMKLQLTGLKTVATIDY 456 Query: 422 LDSSSRFLGEQDGILDLETGQKVKPTKELYITKS------------TGTPFVEGEPSQEF 469 L S G + + G K E + + E+ Sbjct: 457 LGYSREHACYVLGDVAVRGGVIEKANAEDFFEFQKLRLKTLQRSIKLQIATDAKDYRPEW 516 Query: 470 LDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIH----IRGVGGSGKSTLMNLIKYAF 525 LD + F ++ ++ G +A+ G G+GKSTL+ + Sbjct: 517 LDWLWTCFGAKGLVA-LAFWFGSLFAEQIRAEFQSFPFLEATGEAGAGKSTLITFLWKLL 575 Query: 526 GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAA-------KI 578 G + S + + L +L +V++ ++ A + Sbjct: 576 GRADEEGQDPSKMTK------AGLRRWLTQLSNMPMVLLEADRSDNNRGTAAKAFDWDEF 629 Query: 579 KQMTGGDC--MTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP 635 K + G +T + GN E P T I N + +A R + + F +P Sbjct: 630 KPLFNGRSLGVTGQKTAGNETYEPPFRGTLVISQNATVV---ASEAIMTRIVKLHFSRP 685 >gi|154249627|ref|YP_001410452.1| ABC transporter related [Fervidobacterium nodosum Rt17-B1] gi|154153563|gb|ABS60795.1| ABC transporter related [Fervidobacterium nodosum Rt17-B1] Length = 580 Score = 45.3 bits (105), Expect = 0.039, Method: Composition-based stats. Identities = 23/173 (13%), Positives = 58/173 (33%), Gaps = 9/173 (5%) Query: 256 QGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAM 315 +G ++E+++N TF E R + L + K++ Sbjct: 100 KGLGFNEDDWNRNISTFSGGEKTRLQLGRLFIEEPDFLLLDEPTNFLDIESI--EFLKSL 157 Query: 316 FSIYKKGHFLYTADT-------KAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFD 368 YK G+ + + D +++ + V+I+ + D+ + + + V + Sbjct: 158 LKSYKGGYIIISHDRDFLRSVCDKFWEINNERVWIFDMDFDRYHLERQRIMETQRRQVAN 217 Query: 369 LSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDL 421 + +E E + W + +Q + + + LE + + Sbjct: 218 IQKEIERLRTIIDRYKKWGREKFTKQAKSKEKMLEKMLEELENMPNLYLEEEE 270 >gi|112180595|gb|AAH51965.1| Rfx5 protein [Mus musculus] Length = 570 Score = 45.3 bits (105), Expect = 0.040, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 30/79 (37%), Gaps = 4/79 (5%) Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754 WI + + + S+ +Y +Y E + +ST +++ IK Sbjct: 5 RWIRNHLEEHMDTCLPKQSVYDAYRKYC--ESLACCRPLSTANFGKIIRE--IFPDIKAR 60 Query: 755 KIEKEWKSKRIIKGLKLKP 773 ++ +SK G++ K Sbjct: 61 RLGGRGQSKYCYSGIRRKT 79 >gi|300853542|ref|YP_003778526.1| phage-like protein [Clostridium ljungdahlii DSM 13528] gi|300433657|gb|ADK13424.1| phage-related protein [Clostridium ljungdahlii DSM 13528] Length = 787 Score = 45.3 bits (105), Expect = 0.042, Method: Composition-based stats. Identities = 36/229 (15%), Positives = 71/229 (31%), Gaps = 30/229 (13%) Query: 468 EFLDLVSGYFESEE-------VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNL 520 +L+ YF + + + V G K + + G G GKST Sbjct: 463 RVENLLIDYFGAADSTYTKAVIRKTMVAAVARIYQPGTKFDSVLILNGPQGIGKSTF--- 519 Query: 521 IKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQ 580 G + + +D+ PE +L G ++ + E + + +K Sbjct: 520 FAKLAGEWFSDSLTITDMKDKAGPE---------KLQGYWMLELGELAGMRKTDVEIVKS 570 Query: 581 MTGGDCMTARLNYGNTYSESPASFTPFIVPN-KHLFVRNPDDAWWRRYIVIPFDKPIANR 639 R +YG P N ++ F+R+ RR+ + I+ Sbjct: 571 FISRVDDKYRASYGVNVENHPRQCIIVGSTNAENGFLRDISG--NRRF----WPVRISGN 624 Query: 640 DASFAQKLETKYTLEAKKWFL----KGVKAYISKGLDVDIPEVCLKAKE 684 + ++ T+ + + +G K Y+ + A E Sbjct: 625 STKKSWQITTEEVQQILAEAIFLYKQGEKLYLEGDDAILASGEQADAME 673 >gi|170694124|ref|ZP_02885279.1| Primase 2 [Burkholderia graminis C4D1M] gi|170140864|gb|EDT09037.1| Primase 2 [Burkholderia graminis C4D1M] Length = 632 Score = 45.3 bits (105), Expect = 0.044, Method: Composition-based stats. Identities = 19/115 (16%), Positives = 32/115 (27%), Gaps = 11/115 (9%) Query: 202 NRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYD 261 NR+Y E A + W+ + A+ G I WS+ Y Sbjct: 2 NRRYLTEEERAR--AALATIPAEDYMTWVDMAFALKQGF--GEAGFPIWDDWSRTAHNYS 57 Query: 262 EENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMF 316 E W + T SL++ + + SD ++ Sbjct: 58 ESAARVTWRSAGESGG-------KTLASLYWLAQQHGFDVRASRAASDPAERSRM 105 >gi|206562201|ref|YP_002232964.1| hypothetical protein BCAM0337 [Burkholderia cenocepacia J2315] gi|198038241|emb|CAR54195.1| conserved hypothetical protein [Burkholderia cenocepacia J2315] Length = 615 Score = 45.3 bits (105), Expect = 0.044, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 19/48 (39%), Gaps = 2/48 (4%) Query: 224 GSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDT 271 G + W+ + AV H G ++ WS+ YD + W + Sbjct: 22 GDYSTWVDMAFAVKH--GLGEAGFDLWDAWSQTAPNYDARSARATWRS 67 >gi|313677591|ref|YP_004055587.1| hypothetical protein Ftrac_3509 [Marivirga tractuosa DSM 4126] gi|312944289|gb|ADR23479.1| hypothetical protein Ftrac_3509 [Marivirga tractuosa DSM 4126] Length = 405 Score = 45.3 bits (105), Expect = 0.045, Method: Composition-based stats. Identities = 34/230 (14%), Positives = 67/230 (29%), Gaps = 20/230 (8%) Query: 433 DGILDLETGQKVKPTKELYITKSTGTPFVEGE-PSQEFLDLVSGYFESEEVMDYFTRCVG 491 DG + + + T + E + F ++ F + + Sbjct: 58 DGFCNYPSHTNYQETIGKLFNTYKKLNYEPKEGSIENFKAYMNHIF--QSQYELGLDYF- 114 Query: 492 MALLGGNKA--QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549 L + G+GK+T++NL K FG+ +N Q + + Sbjct: 115 TILYQKPTQALPILCLVSRERGTGKTTILNLSKLIFGDNMTVNKTEDFRSQYNEDWSSEL 174 Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609 ++ I E + + ++ +IK ++ ++ Y E + Sbjct: 175 -----------LIGIDEALLDRKEDSERIKNLSTAKTTKSQAKYKQR-VEQEFFGKFILC 222 Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWF 659 N D RY VI KP + F + K + Sbjct: 223 SNHEETFIPIDQGET-RYWVIK-VKPFEGEEDPFLIEKLEKEIPAIMHFL 270 >gi|161019537|gb|ABX56103.1| E1 [Macaca fascicularis papillomavirus type 5] Length = 628 Score = 45.3 bits (105), Expect = 0.046, Method: Composition-based stats. Identities = 27/201 (13%), Positives = 60/201 (29%), Gaps = 28/201 (13%) Query: 461 VEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNL 520 +G ++ + + +++ E + + + L G K I + G +GKS Sbjct: 413 DDGGDWRQIVQFLR--YQNVEFITFL-SALKNFLKGIPKKN-CIVLYGPPNTGKSYFGMS 468 Query: 521 IKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQ 580 + + + + ++ + L + S + Sbjct: 469 LMKFL----QGSIISYVNSSSHFWLQPLSDAKVAMLDDATPACWSYIDNYMR-------N 517 Query: 581 MTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWW--RRYIVIPFDKPIA- 637 G+ MT Y N P ++ + D + R +V F +P Sbjct: 518 ALDGNPMTIDRKYKNL---IQMKCPPLLITSNT-NAGTDDRWLYLHSRLVVFTFKQPFPF 573 Query: 638 NRDASFAQKLETKYTLEAKKW 658 +R+ + +L K W Sbjct: 574 DRNGNPVYELNDK------NW 588 >gi|88195260|ref|YP_500063.1| hypothetical protein SAOUHSC_01547 [Staphylococcus aureus subsp. aureus NCTC 8325] gi|87202818|gb|ABD30628.1| conserved hypothetical phage protein [Staphylococcus aureus subsp. aureus NCTC 8325] Length = 665 Score = 45.3 bits (105), Expect = 0.046, Method: Composition-based stats. Identities = 28/168 (16%), Positives = 52/168 (30%), Gaps = 19/168 (11%) Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549 + + G K + + G G GKS L+ + + + EA Sbjct: 515 IARVMEPGCKFDYMLTLYGPQGVGKSALLKKL-----GGAWFSDSLVSVTGKEAYEA--- 566 Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV 609 L G ++ ++E + IK R+ YG+ + P Sbjct: 567 ------LQGVWLMEMAELAATRKAEVEAIKHFISKQVDRFRVAYGHYIEDFPRQCIFIGT 620 Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKK 657 NK F+R+ RR+ P + +++ KL + Sbjct: 621 TNKVDFLRDETGG--RRFW--PMTVNPERVEVNWS-KLTKDEIDQIWA 663 >gi|268592747|ref|ZP_06126968.1| ATPase, AAA-superfamily [Providencia rettgeri DSM 1131] gi|291311523|gb|EFE51976.1| ATPase, AAA-superfamily [Providencia rettgeri DSM 1131] Length = 373 Score = 44.9 bits (104), Expect = 0.049, Method: Composition-based stats. Identities = 33/224 (14%), Positives = 76/224 (33%), Gaps = 27/224 (12%) Query: 445 KPTKELYITKSTGTPFVEGEP--SQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQR 502 L + K++ TP V +P + E + + + ++ +G+ + R Sbjct: 80 DEDSRLTLLKTSPTPEVISKPLLNSEIENALDQLILERKNINKLEE-LGL------QPTR 132 Query: 503 FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLM-GSRI 561 G G GK+ + + G + + + + +L G + Sbjct: 133 SAIFVGPPGVGKTLTASWLAQKLGVPFYVLDLTAVMSSYLGKSGNNLRAALDFAKKGPCV 192 Query: 562 VIISETN-----ENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV 616 +++ E + +D+ + ++K++ + P+S N + Sbjct: 193 LLLDEIDSIAKKRSDDSDVGELKRLVT--------VILQEVDQWPSSSLLLAATNYEELI 244 Query: 617 RNPDDAWWRRY-IVIPFDKPIANRDASFAQKLETKYTLEAKKWF 659 D A WRR+ +V+ F+KP + Q+ +W Sbjct: 245 ---DPALWRRFDLVLHFEKPNSETIKEAIQRFLGADYAIFARWI 285 >gi|56708874|ref|YP_164917.1| hypothetical protein SPOA0086 [Ruegeria pomeroyi DSS-3] gi|56680559|gb|AAV97224.1| conserved hypothetical protein [Ruegeria pomeroyi DSS-3] Length = 603 Score = 44.9 bits (104), Expect = 0.049, Method: Composition-based stats. Identities = 21/160 (13%), Positives = 46/160 (28%), Gaps = 29/160 (18%) Query: 38 EQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIG 97 + L + + P L D+D K K A D L T V G Sbjct: 71 DIELVQKALRTHPRANLAISLA----GLTVVDVDGKAGKQAVEGLD----LPKTVKVFTG 122 Query: 98 QKPKILIPFRMNKEGIKKKKTTESTQGHLDIL-GCGQYFVAYNIHPKTKKEYTWTTPPHR 156 + + ++ + +D+L G + + + K Y +++ Sbjct: 123 R--GYHLYYQ------GECSGGAFKGDEIDVLTGANRMVMVPPSTHPSGKRYRYSSQ--- 171 Query: 157 FKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKT 196 S + + K ++ + +K + + Sbjct: 172 ---------SPSGMAAMPKNLSKLKPDRTQHRKEGPQTAS 202 >gi|14602327|ref|NP_148874.1| ORF90 HELICASE [Cydia pomonella granulovirus] gi|14591845|gb|AAK70750.1|U53466_90 ORF90 HELICASE [Cydia pomonella granulovirus] Length = 1131 Score = 44.9 bits (104), Expect = 0.050, Method: Composition-based stats. Identities = 41/351 (11%), Positives = 99/351 (28%), Gaps = 63/351 (17%) Query: 449 ELYITKSTGTPFVEGEPSQEFLDLVSGYFES-EEVMDYFT-------------------- 487 +L I G + ++ Y +E+ + Sbjct: 754 DLLIVHQPGENMYDWLTRFYIRSFLNDYTGDMKELYNVVLGFSYFRVFTNFHSNNSKALI 813 Query: 488 RCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAG 547 + N + + + GKS+L L + + Sbjct: 814 NFCASFAIPINNEKMCLVLSSKPNCGKSSLWELFSK-------NKILVYKQDKEEYKHSK 866 Query: 548 KANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCM-TARLNYGNTYSESPASFTP 606 ++L S++ +++E + + +K + M +AR NYG +F Sbjct: 867 SERDEKVKLYESQLYVMNEAQKFSK---TFLKTIVDSTRMDSARCNYG-IVEMFNITFKA 922 Query: 607 FIVPNKHLFV--RNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVK 664 + N+ + D A R + FD + + Sbjct: 923 LVCNNEDDKILVDGYDRACSNRIGQMYFDHDFDDSN----------EFSG---------- 962 Query: 665 AYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQ 724 + + E + + D +A++ + N + L Y + + Sbjct: 963 SVYEHHIRKRYCE-VRDVTD-YLK--DPVRAFLANVLQHKCNPID--GQLY--YKCFLQG 1014 Query: 725 ELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAF 775 + Y + +++ ++ +K K +E+ + +I +KL + Sbjct: 1015 DNTYKHNKKCLYIYNNSIEALLYVMNVKEVKTAQEFSHETLIDTIKLAEKY 1065 >gi|308463093|ref|XP_003093824.1| CRE-RPT-6 protein [Caenorhabditis remanei] gi|308249314|gb|EFO93266.1| CRE-RPT-6 protein [Caenorhabditis remanei] Length = 408 Score = 44.9 bits (104), Expect = 0.051, Method: Composition-based stats. Identities = 48/329 (14%), Positives = 95/329 (28%), Gaps = 47/329 (14%) Query: 362 MKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDL 421 +++ + + + N + + Q E GS S Sbjct: 27 LRKYFRTKVDAAQQKVADKSQNVRRLQAQRNELNTKVRMLKEELQQLHEQGSYVGEVSKA 86 Query: 422 LDSSSRFLGE-QDGILDLETGQKVK-----------------------PTKELYITKSTG 457 +D + +G ++ + + P K + Sbjct: 87 MDKKKVLVKVHPEGKYVVDVDKSIDINSLNTGARVALRADSYALHKVLPNKVDPLVSLMM 146 Query: 458 TPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGVGG 511 V + L E +EV++ +G+A + + + G G Sbjct: 147 VEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIA------QPKGVLLYGPPG 200 Query: 512 SGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEND 571 +GK+ L + + I S+++Q E + L + I +E D Sbjct: 201 TGKTLLARAVAH-HTECTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEID 259 Query: 572 EINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR-- 625 I +++++ +GGD R L E+ + + N+ + D A R Sbjct: 260 SIGSSRVEGSSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DPALLRPG 316 Query: 626 RY-IVIPFDKPIANRDASFAQKLETKYTL 653 R I F P A + K L Sbjct: 317 RIDRKIEFPAPDEKARADILKIHSRKMNL 345 >gi|187903120|ref|YP_001883411.1| hypothetical protein MdSGHV083 [Musca domestica salivary gland hypertrophy virus] gi|187384769|gb|ACD03542.1| hypothetical protein MdSGHV083 [Musca domestica salivary gland hypertrophy virus] Length = 1780 Score = 44.9 bits (104), Expect = 0.051, Method: Composition-based stats. Identities = 22/146 (15%), Positives = 49/146 (33%), Gaps = 12/146 (8%) Query: 488 RCVGMALLGGNKAQRFIHIRGVGGSGKSTLM--NLIKYAFGNQYVINAEASDIMQNRPPE 545 R + NK + +GKS + ++ + + S + Q Sbjct: 1477 RLWARVTVPRNKHRISPLFTLHTATGKSEYLTERCRRHFNNKYFNNVLDPSSLAQTDHRG 1536 Query: 546 AGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFT 605 + R + + +++ E + + AK KQ+ G + + + +T + T Sbjct: 1537 -----TDMARELNTNLIVC--IEEFNSL-TAKFKQVCGYTSVAYKPLFADTKVSFQNNST 1588 Query: 606 PFIVPNKHLFVRNPDDAWWRRYIVIP 631 + N + ++A R V P Sbjct: 1589 VILSTNNDP--KCNEEAIVARLHVYP 1612 >gi|1592665|emb|CAA66227.1| large non-structural protein [Aleutian mink disease virus] Length = 620 Score = 44.9 bits (104), Expect = 0.051, Method: Composition-based stats. Identities = 51/358 (14%), Positives = 97/358 (27%), Gaps = 59/358 (16%) Query: 279 DTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKA------ 332 + R+ ++ G P + YNK + + F+Y + Sbjct: 202 KDPEDRAKNLKVWIEDGPTKPYKYFNKQTKQDYNKPVH--LRDYTFIYLFNKDKINTDSM 259 Query: 333 -WYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNK--------NSKSP 383 Y N + +LT + +L D+ D + + ED+ +S + Sbjct: 260 DGYFAAGNGGIVDNLTNKERKTLRKMYLDEQSSDIMDANIDWEDSQDAPKVTDQTDSATT 319 Query: 384 RFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGE------------ 431 + + ++ + SK + + LD+ Sbjct: 320 KTGTSLIWKSCATKVTSKKEVANPVQQPSKKLYSAQSTLDALFNVGCFTPEDMIIKQSDK 379 Query: 432 -------QDGILDLETGQKVKPTKELYITKSTGTP----FVEGEPSQEFLDLVSGYFESE 480 +G + + + T T F E E + L + +E Sbjct: 380 YLELSLEPNGP--QKINTLLHMNQVKTSTMITAFDCIVKFNEEEDDKPLLATIKDMGLNE 437 Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540 + Y + + L + I G GG+GK+ L +LI A N ++ Sbjct: 438 Q---YLKKVLCTILTKQGGKRGCIWFYGPGGTGKTLLASLICKATVNYGMVTT------- 487 Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598 N I+ E K +TGG + S Sbjct: 488 ------SNPNFPWTDCGNRNIIWAEECGNFGNWVED-FKAITGGGDVKVDTKNKQPQS 538 >gi|301312248|ref|ZP_07218165.1| conserved hypothetical protein [Bacteroides sp. 20_3] gi|300829670|gb|EFK60323.1| conserved hypothetical protein [Bacteroides sp. 20_3] Length = 396 Score = 44.9 bits (104), Expect = 0.052, Method: Composition-based stats. Identities = 36/200 (18%), Positives = 56/200 (28%), Gaps = 28/200 (14%) Query: 466 SQEFLDLVSGYFESE-EV-MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKY 523 Q L + F E+ +DY + K + + +GKST +NL+K Sbjct: 88 CQVTLGFIRHIFGEHYELGLDYMQLLY---MKPITKLPILVLVSKENNTGKSTFLNLLKM 144 Query: 524 AFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTG 583 FG N Q A I+ + ET N + +IK ++ Sbjct: 145 IFGKNMTFNTNEDFRSQFNSDWAN-----------KLIIGVDETLLNRMEDTERIKNLST 193 Query: 584 GDCMTARLNYGNTYSESPASFTPFIVPNK----HLFVRNPDDAWWRRYIVIPFDKPIANR 639 G +E N W R+ P+ N Sbjct: 194 AFTYKIEGK-GKDRAEIEFFGKFVFCSNNEENALYISPGETRFWVRKI------HPLTNG 246 Query: 640 DASFAQKLETKYTLEAKKWF 659 D F +KL + Sbjct: 247 DPLFLRKL-KSEIPAFLYFL 265 >gi|62087652|dbj|BAD92273.1| proteasome 26S ATPase subunit 5 variant [Homo sapiens] Length = 345 Score = 44.9 bits (104), Expect = 0.054, Method: Composition-based stats. Identities = 41/266 (15%), Positives = 82/266 (30%), Gaps = 34/266 (12%) Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP----TKELYITKS 455 K K + G +D + + + L K + Sbjct: 77 DKKKVLVKVHPEGKFVVDVDKNIDINDV---TPNCRVALRNDSYTLHKILPNKVDPLVSL 133 Query: 456 TGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGV 509 V + L E +EV++ +G+A + + + G Sbjct: 134 MMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIA------QPKGVLLYGP 187 Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569 G+GK+ L + + + I S+++Q E + L + I +E Sbjct: 188 PGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDE 246 Query: 570 NDEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625 D I +++++ +GGD R L E+ + + N+ + D A R Sbjct: 247 IDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DSALLR 303 Query: 626 --RYIVIPFDKPIANRDASFAQKLET 649 R D+ I + +L+ Sbjct: 304 PGRI-----DRKIEFPPPNEEARLDL 324 >gi|148236805|ref|NP_001085482.1| proteasome (prosome, macropain) 26S subunit, ATPase, 5 [Xenopus laevis] gi|49255977|gb|AAH72829.1| MGC80185 protein [Xenopus laevis] gi|116284353|gb|AAH45221.1| MGC80185 protein [Xenopus laevis] Length = 415 Score = 44.9 bits (104), Expect = 0.054, Method: Composition-based stats. Identities = 49/330 (14%), Positives = 97/330 (29%), Gaps = 47/330 (14%) Query: 349 DKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRR--------------- 393 + + + DL D ++N + + N + Sbjct: 20 MDESRGGIGLRQYYSSKIEDLQLVVNDKSQNLRRLQAQRNELNAKVRLLREELQLLQEQG 79 Query: 394 QNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLG--EQDGILDLETGQKVKP----T 447 V E +A + L +D + + + + L Sbjct: 80 SYVGEVVRAMDKKKVLVKVHPEGKFVVDVDKNID-INDVTPNCRVALRNDSYTLHKILPN 138 Query: 448 KELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQ 501 K + V + L E +EV++ +G+A Sbjct: 139 KVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIA------QP 192 Query: 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRI 561 + + + G G+GK+ L + + + I S+++Q E + L + Sbjct: 193 KGVLLYGPPGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHA 251 Query: 562 VIISETNENDEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLFVR 617 I +E D I +++++ +GGD R L E+ + + N+ + Sbjct: 252 PSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL- 310 Query: 618 NPDDAWWR--RY-IVIPFDKPIANRDASFA 644 D A R R I F P N +A Sbjct: 311 --DSALLRPGRIDRKIEF--PPPNEEARLD 336 >gi|125860194|ref|YP_001036364.1| DNA helicase [Spodoptera frugiperda MNPV] gi|120969339|gb|ABM45782.1| DNA helicase [Spodoptera frugiperda MNPV] gi|167833753|gb|ACA02629.1| helicase [Spodoptera frugiperda MNPV] gi|319997407|gb|ADV91305.1| DNA helicase [Spodoptera frugiperda MNPV] Length = 1228 Score = 44.9 bits (104), Expect = 0.054, Method: Composition-based stats. Identities = 24/146 (16%), Positives = 50/146 (34%), Gaps = 12/146 (8%) Query: 495 LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLI 554 + + + +++ G GSGKS+ +++ + +A+ + ++ Sbjct: 923 IPTDYEKCCLYLNGKPGSGKSSFFAVLEPSVVVHKHDSAKYTLTKKDTNEMEAD------ 976 Query: 555 RLMGSRIVIISETNENDEINAAKIKQMT-GGDCMTARLNYGNTYSESPASFTPFIVPNKH 613 I + NE + + K + Y + + A+F IV NK Sbjct: 977 ----KMISQLYVINEMKVCDDSFFKSTADSTKSNSVCRKYEGSQ-KYEANFKLLIVNNKP 1031 Query: 614 LFVRNPDDAWWRRYIVIPFDKPIANR 639 L + + D R+ VI D Sbjct: 1032 LHISDYDKGVRNRFAVIYTDHLFEEN 1057 >gi|327275516|ref|XP_003222519.1| PREDICTED: 26S protease regulatory subunit 8-like [Anolis carolinensis] Length = 414 Score = 44.9 bits (104), Expect = 0.055, Method: Composition-based stats. Identities = 43/262 (16%), Positives = 81/262 (30%), Gaps = 32/262 (12%) Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP----TKELYITKS 455 K K + G +D + + + L K + Sbjct: 89 DKKKVLVKVHPEGKFVVDVDKNIDINDV---TPNCRVALRNDSYTLHKILPNKVDPLVSL 145 Query: 456 TGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGV 509 V + L E +EV++ +G+A + + + G Sbjct: 146 MMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIA------QPKGVLLYGP 199 Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569 G+GK+ L + + + I S+++Q E + L + I +E Sbjct: 200 PGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDE 258 Query: 570 NDEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625 D I +++++ +GGD R L E+ + + N+ + D A R Sbjct: 259 IDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DSALLR 315 Query: 626 --RY-IVIPFDKPIANRDASFA 644 R I F P N +A Sbjct: 316 PGRIDRKIEF--PPPNEEARLD 335 >gi|317419381|emb|CBN81418.1| 26S protease regulatory subunit 8 [Dicentrarchus labrax] Length = 398 Score = 44.9 bits (104), Expect = 0.055, Method: Composition-based stats. Identities = 43/262 (16%), Positives = 81/262 (30%), Gaps = 32/262 (12%) Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP----TKELYITKS 455 K K + G +D + + + L K + Sbjct: 73 DKKKVLVKVHPEGKFVVDVDKNIDINDV---TPNCRVALRNDSYTLHKILPNKVDPLVSL 129 Query: 456 TGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGV 509 V + L E +EV++ +G+A + + + G Sbjct: 130 MMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIA------QPKGVLLYGP 183 Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569 G+GK+ L + + + I S+++Q E + L + I +E Sbjct: 184 PGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDE 242 Query: 570 NDEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625 D I +++++ +GGD R L E+ + + N+ + D A R Sbjct: 243 IDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DSALLR 299 Query: 626 --RY-IVIPFDKPIANRDASFA 644 R I F P N +A Sbjct: 300 PGRIDRKIEF--PPPNEEARLD 319 >gi|297273389|ref|XP_002800610.1| PREDICTED: 26S protease regulatory subunit 8-like isoform 2 [Macaca mulatta] Length = 422 Score = 44.9 bits (104), Expect = 0.055, Method: Composition-based stats. Identities = 43/262 (16%), Positives = 81/262 (30%), Gaps = 32/262 (12%) Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP----TKELYITKS 455 K K + G +D + + + L K + Sbjct: 97 DKKKVLVKVHPEGKFVVDVDKNIDINDV---TPNCRVALRNDSYTLHKILPNKVDPLVSL 153 Query: 456 TGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGV 509 V + L E +EV++ +G+A + + + G Sbjct: 154 MMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIA------QPKGVLLYGP 207 Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569 G+GK+ L + + + I S+++Q E + L + I +E Sbjct: 208 PGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDE 266 Query: 570 NDEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625 D I +++++ +GGD R L E+ + + N+ + D A R Sbjct: 267 IDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DSALLR 323 Query: 626 --RY-IVIPFDKPIANRDASFA 644 R I F P N +A Sbjct: 324 PGRIDRKIEF--PPPNEEARLD 343 >gi|281351659|gb|EFB27243.1| hypothetical protein PANDA_013936 [Ailuropoda melanoleuca] Length = 357 Score = 44.9 bits (104), Expect = 0.055, Method: Composition-based stats. Identities = 43/262 (16%), Positives = 81/262 (30%), Gaps = 32/262 (12%) Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP----TKELYITKS 455 K K + G +D + + + L K + Sbjct: 32 DKKKVLVKVHPEGKFVVDVDKNIDINDV---TPNCRVALRNDSYTLHKILPNKVDPLVSL 88 Query: 456 TGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGV 509 V + L E +EV++ +G+A + + + G Sbjct: 89 MMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIA------QPKGVLLYGP 142 Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569 G+GK+ L + + + I S+++Q E + L + I +E Sbjct: 143 PGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDE 201 Query: 570 NDEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625 D I +++++ +GGD R L E+ + + N+ + D A R Sbjct: 202 IDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DSALLR 258 Query: 626 --RY-IVIPFDKPIANRDASFA 644 R I F P N +A Sbjct: 259 PGRIDRKIEF--PPPNEEARLD 278 >gi|229366526|gb|ACQ58243.1| 26S protease regulatory subunit 8 [Anoplopoma fimbria] Length = 406 Score = 44.9 bits (104), Expect = 0.055, Method: Composition-based stats. Identities = 43/262 (16%), Positives = 81/262 (30%), Gaps = 32/262 (12%) Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP----TKELYITKS 455 K K + G +D + + + L K + Sbjct: 81 DKKKVLVKVHPEGKFVVDVDKNIDINDV---TPNCRVALRNDSYTLHKILPNKVDPLVSL 137 Query: 456 TGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGV 509 V + L E +EV++ +G+A + + + G Sbjct: 138 MMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIA------QPKGVLLYGP 191 Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569 G+GK+ L + + + I S+++Q E + L + I +E Sbjct: 192 PGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDE 250 Query: 570 NDEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625 D I +++++ +GGD R L E+ + + N+ + D A R Sbjct: 251 IDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DSALLR 307 Query: 626 --RY-IVIPFDKPIANRDASFA 644 R I F P N +A Sbjct: 308 PGRIDRKIEF--PPPNEEARLD 327 >gi|225707968|gb|ACO09830.1| 26S protease regulatory subunit 8 [Osmerus mordax] Length = 406 Score = 44.9 bits (104), Expect = 0.055, Method: Composition-based stats. Identities = 43/262 (16%), Positives = 81/262 (30%), Gaps = 32/262 (12%) Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP----TKELYITKS 455 K K + G +D + + + L K + Sbjct: 81 DKKKVLVKVHPEGKFVVDVDKNIDINDV---TPNCRVALRNDSYTLHKILPNKVDPLVSL 137 Query: 456 TGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGV 509 V + L E +EV++ +G+A + + + G Sbjct: 138 MMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIA------QPKGVLLYGP 191 Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569 G+GK+ L + + + I S+++Q E + L + I +E Sbjct: 192 PGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDE 250 Query: 570 NDEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625 D I +++++ +GGD R L E+ + + N+ + D A R Sbjct: 251 IDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DSALLR 307 Query: 626 --RY-IVIPFDKPIANRDASFA 644 R I F P N +A Sbjct: 308 PGRIDRKIEF--PPPNEEARLD 327 >gi|197128441|gb|ACH44939.1| putative proteasome 26S subunit ATPase 5 variant 1 [Taeniopygia guttata] Length = 411 Score = 44.9 bits (104), Expect = 0.055, Method: Composition-based stats. Identities = 43/262 (16%), Positives = 81/262 (30%), Gaps = 32/262 (12%) Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP----TKELYITKS 455 K K + G +D + + + L K + Sbjct: 86 DKKKVLVKVHPEGKFVVDVDKNIDINDV---TPNCRVALRNDSYTLHKILPNKVDPLVSL 142 Query: 456 TGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGV 509 V + L E +EV++ +G+A + + + G Sbjct: 143 MMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIA------QPKGVLLYGP 196 Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569 G+GK+ L + + + I S+++Q E + L + I +E Sbjct: 197 PGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDE 255 Query: 570 NDEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625 D I +++++ +GGD R L E+ + + N+ + D A R Sbjct: 256 IDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DSALLR 312 Query: 626 --RY-IVIPFDKPIANRDASFA 644 R I F P N +A Sbjct: 313 PGRIDRKIEF--PPPNEEARLD 332 >gi|149054556|gb|EDM06373.1| peptidase (prosome, macropain) 26S subunit, ATPase 5, isoform CRA_b [Rattus norvegicus] Length = 416 Score = 44.9 bits (104), Expect = 0.055, Method: Composition-based stats. Identities = 43/262 (16%), Positives = 81/262 (30%), Gaps = 32/262 (12%) Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP----TKELYITKS 455 K K + G +D + + + L K + Sbjct: 91 DKKKVLVKVHPEGKFVVDVDKNIDINDV---TPNCRVALRNDSYTLHKILPNKVDPLVSL 147 Query: 456 TGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGV 509 V + L E +EV++ +G+A + + + G Sbjct: 148 MMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIA------QPKGVLLYGP 201 Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569 G+GK+ L + + + I S+++Q E + L + I +E Sbjct: 202 PGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDE 260 Query: 570 NDEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625 D I +++++ +GGD R L E+ + + N+ + D A R Sbjct: 261 IDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DSALLR 317 Query: 626 --RY-IVIPFDKPIANRDASFA 644 R I F P N +A Sbjct: 318 PGRIDRKIEF--PPPNEEARLD 337 >gi|126308659|ref|XP_001376943.1| PREDICTED: similar to mSUG1 protein [Monodelphis domestica] Length = 451 Score = 44.9 bits (104), Expect = 0.055, Method: Composition-based stats. Identities = 43/262 (16%), Positives = 81/262 (30%), Gaps = 32/262 (12%) Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP----TKELYITKS 455 K K + G +D + + + L K + Sbjct: 126 DKKKVLVKVHPEGKFVVDVDKNIDINDV---TPNCRVALRNDSYTLHKILPNKVDPLVSL 182 Query: 456 TGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGV 509 V + L E +EV++ +G+A + + + G Sbjct: 183 MMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIA------QPKGVLLYGP 236 Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569 G+GK+ L + + + I S+++Q E + L + I +E Sbjct: 237 PGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDE 295 Query: 570 NDEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625 D I +++++ +GGD R L E+ + + N+ + D A R Sbjct: 296 IDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DSALLR 352 Query: 626 --RY-IVIPFDKPIANRDASFA 644 R I F P N +A Sbjct: 353 PGRIDRKIEF--PPPNEEARLD 372 >gi|118102836|ref|XP_425834.2| PREDICTED: similar to mSUG1 protein [Gallus gallus] Length = 406 Score = 44.9 bits (104), Expect = 0.055, Method: Composition-based stats. Identities = 43/262 (16%), Positives = 81/262 (30%), Gaps = 32/262 (12%) Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP----TKELYITKS 455 K K + G +D + + + L K + Sbjct: 81 DKKKVLVKVHPEGKFVVDVDKNIDINDV---TPNCRVALRNDSYTLHKILPNKVDPLVSL 137 Query: 456 TGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGV 509 V + L E +EV++ +G+A + + + G Sbjct: 138 MMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIA------QPKGVLLYGP 191 Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569 G+GK+ L + + + I S+++Q E + L + I +E Sbjct: 192 PGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDE 250 Query: 570 NDEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625 D I +++++ +GGD R L E+ + + N+ + D A R Sbjct: 251 IDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DSALLR 307 Query: 626 --RY-IVIPFDKPIANRDASFA 644 R I F P N +A Sbjct: 308 PGRIDRKIEF--PPPNEEARLD 327 >gi|114669878|ref|XP_001149776.1| PREDICTED: similar to mSUG1 protein isoform 7 [Pan troglodytes] gi|119614675|gb|EAW94269.1| proteasome (prosome, macropain) 26S subunit, ATPase, 5, isoform CRA_a [Homo sapiens] Length = 383 Score = 44.9 bits (104), Expect = 0.055, Method: Composition-based stats. Identities = 43/262 (16%), Positives = 81/262 (30%), Gaps = 32/262 (12%) Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP----TKELYITKS 455 K K + G +D + + + L K + Sbjct: 58 DKKKVLVKVHPEGKFVVDVDKNIDINDV---TPNCRVALRNDSYTLHKILPNKVDPLVSL 114 Query: 456 TGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGV 509 V + L E +EV++ +G+A + + + G Sbjct: 115 MMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIA------QPKGVLLYGP 168 Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569 G+GK+ L + + + I S+++Q E + L + I +E Sbjct: 169 PGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDE 227 Query: 570 NDEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625 D I +++++ +GGD R L E+ + + N+ + D A R Sbjct: 228 IDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DSALLR 284 Query: 626 --RY-IVIPFDKPIANRDASFA 644 R I F P N +A Sbjct: 285 PGRIDRKIEF--PPPNEEARLD 304 >gi|50604137|gb|AAH77223.1| Unknown (protein for MGC:79055) [Xenopus laevis] Length = 414 Score = 44.9 bits (104), Expect = 0.055, Method: Composition-based stats. Identities = 43/262 (16%), Positives = 81/262 (30%), Gaps = 32/262 (12%) Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP----TKELYITKS 455 K K + G +D + + + L K + Sbjct: 89 DKKKVLVKVHPEGKFVVDVDKNIDINDV---TPNCRVALRNDSYTLHKILPNKVDPLVSL 145 Query: 456 TGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGV 509 V + L E +EV++ +G+A + + + G Sbjct: 146 MMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIA------QPKGVLLYGP 199 Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569 G+GK+ L + + + I S+++Q E + L + I +E Sbjct: 200 PGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDE 258 Query: 570 NDEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625 D I +++++ +GGD R L E+ + + N+ + D A R Sbjct: 259 IDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DSALLR 315 Query: 626 --RY-IVIPFDKPIANRDASFA 644 R I F P N +A Sbjct: 316 PGRIDRKIEF--PPPNEEARLD 335 >gi|326933955|ref|XP_003213063.1| PREDICTED: 26S protease regulatory subunit 8-like [Meleagris gallopavo] Length = 411 Score = 44.9 bits (104), Expect = 0.055, Method: Composition-based stats. Identities = 43/262 (16%), Positives = 81/262 (30%), Gaps = 32/262 (12%) Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP----TKELYITKS 455 K K + G +D + + + L K + Sbjct: 86 DKKKVLVKVHPEGKFVVDVDKNIDINDV---TPNCRVALRNDSYTLHKILPNKVDPLVSL 142 Query: 456 TGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGV 509 V + L E +EV++ +G+A + + + G Sbjct: 143 MMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIA------QPKGVLLYGP 196 Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569 G+GK+ L + + + I S+++Q E + L + I +E Sbjct: 197 PGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDE 255 Query: 570 NDEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625 D I +++++ +GGD R L E+ + + N+ + D A R Sbjct: 256 IDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DSALLR 312 Query: 626 --RY-IVIPFDKPIANRDASFA 644 R I F P N +A Sbjct: 313 PGRIDRKIEF--PPPNEEARLD 332 >gi|54696318|gb|AAV38531.1| proteasome (prosome, macropain) 26S subunit, ATPase, 5 [synthetic construct] Length = 407 Score = 44.9 bits (104), Expect = 0.055, Method: Composition-based stats. Identities = 43/262 (16%), Positives = 81/262 (30%), Gaps = 32/262 (12%) Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP----TKELYITKS 455 K K + G +D + + + L K + Sbjct: 81 DKKKVLVKVHPEGKFVVDVDKNIDINDV---TPNCRVALRNDSYTLHKILPNKVDPLVSL 137 Query: 456 TGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGV 509 V + L E +EV++ +G+A + + + G Sbjct: 138 MMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIA------QPKGVLLYGP 191 Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569 G+GK+ L + + + I S+++Q E + L + I +E Sbjct: 192 PGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDE 250 Query: 570 NDEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625 D I +++++ +GGD R L E+ + + N+ + D A R Sbjct: 251 IDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DSALLR 307 Query: 626 --RY-IVIPFDKPIANRDASFA 644 R I F P N +A Sbjct: 308 PGRIDRKIEF--PPPNEEARLD 327 >gi|73965197|ref|XP_861297.1| PREDICTED: similar to for proteasomal ATPase (SUG1) isoform 3 [Canis familiaris] gi|114669880|ref|XP_001149643.1| PREDICTED: similar to mSUG1 protein isoform 6 [Pan troglodytes] Length = 327 Score = 44.9 bits (104), Expect = 0.055, Method: Composition-based stats. Identities = 43/262 (16%), Positives = 81/262 (30%), Gaps = 32/262 (12%) Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP----TKELYITKS 455 K K + G +D + + + L K + Sbjct: 2 DKKKVLVKVHPEGKFVVDVDKNIDINDV---TPNCRVALRNDSYTLHKILPNKVDPLVSL 58 Query: 456 TGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGV 509 V + L E +EV++ +G+A + + + G Sbjct: 59 MMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIA------QPKGVLLYGP 112 Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569 G+GK+ L + + + I S+++Q E + L + I +E Sbjct: 113 PGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDE 171 Query: 570 NDEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625 D I +++++ +GGD R L E+ + + N+ + D A R Sbjct: 172 IDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DSALLR 228 Query: 626 --RY-IVIPFDKPIANRDASFA 644 R I F P N +A Sbjct: 229 PGRIDRKIEF--PPPNEEARLD 248 >gi|51230594|ref|NP_001003740.1| 26S protease regulatory subunit 8 [Danio rerio] gi|50603847|gb|AAH78375.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 5 [Danio rerio] gi|182891110|gb|AAI65834.1| Psmc5 protein [Danio rerio] Length = 406 Score = 44.9 bits (104), Expect = 0.055, Method: Composition-based stats. Identities = 43/262 (16%), Positives = 81/262 (30%), Gaps = 32/262 (12%) Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP----TKELYITKS 455 K K + G +D + + + L K + Sbjct: 81 DKKKVLVKVHPEGKFVVDVDKNIDINDV---TPNCRVALRNDSYTLHKILPNKVDPLVSL 137 Query: 456 TGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGV 509 V + L E +EV++ +G+A + + + G Sbjct: 138 MMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIA------QPKGVLLYGP 191 Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569 G+GK+ L + + + I S+++Q E + L + I +E Sbjct: 192 PGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDE 250 Query: 570 NDEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625 D I +++++ +GGD R L E+ + + N+ + D A R Sbjct: 251 IDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DSALLR 307 Query: 626 --RY-IVIPFDKPIANRDASFA 644 R I F P N +A Sbjct: 308 PGRIDRKIEF--PPPNEEARLD 327 >gi|47219715|emb|CAG12637.1| unnamed protein product [Tetraodon nigroviridis] Length = 406 Score = 44.9 bits (104), Expect = 0.055, Method: Composition-based stats. Identities = 43/262 (16%), Positives = 81/262 (30%), Gaps = 32/262 (12%) Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP----TKELYITKS 455 K K + G +D + + + L K + Sbjct: 81 DKKKVLVKVHPEGKFVVDVDKNIDINDV---TPNCRVALRNDSYTLHKILPNKVDPLVSL 137 Query: 456 TGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGV 509 V + L E +EV++ +G+A + + + G Sbjct: 138 MMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIA------QPKGVLLYGP 191 Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569 G+GK+ L + + + I S+++Q E + L + I +E Sbjct: 192 PGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDE 250 Query: 570 NDEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625 D I +++++ +GGD R L E+ + + N+ + D A R Sbjct: 251 IDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DSALLR 307 Query: 626 --RY-IVIPFDKPIANRDASFA 644 R I F P N +A Sbjct: 308 PGRIDRKIEF--PPPNEEARLD 327 >gi|12846001|dbj|BAB26990.1| unnamed protein product [Mus musculus] Length = 406 Score = 44.9 bits (104), Expect = 0.055, Method: Composition-based stats. Identities = 43/262 (16%), Positives = 81/262 (30%), Gaps = 32/262 (12%) Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP----TKELYITKS 455 K K + G +D + + + L K + Sbjct: 81 DKKKVLVKVHPEGKFVVDVDKNIDINDV---TPNCRVALRNDSYTLHKILPNKVDPLVSL 137 Query: 456 TGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGV 509 V + L E +EV++ +G+A + + + G Sbjct: 138 MMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIA------QPKGVLLYGP 191 Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569 G+GK+ L + + + I S+++Q E + L + I +E Sbjct: 192 PGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDE 250 Query: 570 NDEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625 D I +++++ +GGD R L E+ + + N+ + D A R Sbjct: 251 IDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DSALLR 307 Query: 626 --RY-IVIPFDKPIANRDASFA 644 R I F P N +A Sbjct: 308 PGRIDRKIEF--PPPNEEARLD 327 >gi|2564007|dbj|BAA22935.1| proteasome p45/SUG [Rattus norvegicus] Length = 374 Score = 44.9 bits (104), Expect = 0.055, Method: Composition-based stats. Identities = 43/262 (16%), Positives = 81/262 (30%), Gaps = 32/262 (12%) Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP----TKELYITKS 455 K K + G +D + + + L K + Sbjct: 49 DKKKVLVKVHPEGKFVVDVDKNIDINDV---TPNCRVALRNDSYTLHKILPNKVDPLVSL 105 Query: 456 TGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGV 509 V + L E +EV++ +G+A + + + G Sbjct: 106 MMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIA------QPKGVLLYGP 159 Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569 G+GK+ L + + + I S+++Q E + L + I +E Sbjct: 160 PGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDE 218 Query: 570 NDEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625 D I +++++ +GGD R L E+ + + N+ + D A R Sbjct: 219 IDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DSALLR 275 Query: 626 --RY-IVIPFDKPIANRDASFA 644 R I F P N +A Sbjct: 276 PGRIDRKIEF--PPPNEEARLD 295 >gi|7110703|ref|NP_032976.1| 26S protease regulatory subunit 8 [Mus musculus] gi|13592141|ref|NP_112411.1| 26S protease regulatory subunit 8 [Rattus norvegicus] gi|24497435|ref|NP_002796.4| 26S protease regulatory subunit 8 isoform 1 [Homo sapiens] gi|27806101|ref|NP_776866.1| 26S protease regulatory subunit 8 [Bos taurus] gi|47522792|ref|NP_999148.1| 26S protease regulatory subunit 8 [Sus scrofa] gi|73965193|ref|XP_537597.2| PREDICTED: similar to for proteasomal ATPase (SUG1) isoform 1 [Canis familiaris] gi|114669860|ref|XP_001150043.1| PREDICTED: 26S protease regulatory subunit 8 isoform 10 [Pan troglodytes] gi|114669862|ref|XP_001150100.1| PREDICTED: similar to mSUG1 protein isoform 11 [Pan troglodytes] gi|149723381|ref|XP_001500958.1| PREDICTED: proteasome (prosome, macropain) 26S subunit, ATPase, 5 [Equus caballus] gi|291406361|ref|XP_002719523.1| PREDICTED: protease (prosome, macropain) 26S subunit, ATPase 5-like [Oryctolagus cuniculus] gi|296201787|ref|XP_002806873.1| PREDICTED: LOW QUALITY PROTEIN: 26S protease regulatory subunit 8-like [Callithrix jacchus] gi|297273391|ref|XP_001108909.2| PREDICTED: 26S protease regulatory subunit 8-like isoform 1 [Macaca mulatta] gi|301778301|ref|XP_002924560.1| PREDICTED: 26S protease regulatory subunit 8-like [Ailuropoda melanoleuca] gi|332243114|ref|XP_003270727.1| PREDICTED: 26S protease regulatory subunit 8 [Nomascus leucogenys] gi|49065781|sp|P62197|PRS8_PIG RecName: Full=26S protease regulatory subunit 8; AltName: Full=26S proteasome AAA-ATPase subunit RPT6; AltName: Full=Proteasome 26S subunit ATPase 5; AltName: Full=Proteasome subunit p45; AltName: Full=Tat-binding protein homolog 10; Short=TBP10; AltName: Full=p45/SUG gi|49065782|sp|P62198|PRS8_RAT RecName: Full=26S protease regulatory subunit 8; AltName: Full=26S proteasome AAA-ATPase subunit RPT6; AltName: Full=Proteasome 26S subunit ATPase 5; AltName: Full=Proteasome subunit p45; AltName: Full=Thyroid hormone receptor-interacting protein 1; Short=TRIP1; AltName: Full=p45/SUG gi|49065819|sp|P62195|PRS8_HUMAN RecName: Full=26S protease regulatory subunit 8; AltName: Full=26S proteasome AAA-ATPase subunit RPT6; AltName: Full=Proteasome 26S subunit ATPase 5; AltName: Full=Proteasome subunit p45; AltName: Full=Thyroid hormone receptor-interacting protein 1; Short=TRIP1; AltName: Full=p45/SUG gi|49065820|sp|P62196|PRS8_MOUSE RecName: Full=26S protease regulatory subunit 8; AltName: Full=26S proteasome AAA-ATPase subunit RPT6; AltName: Full=Proteasome 26S subunit ATPase 5; AltName: Full=Proteasome subunit p45; AltName: Full=p45/SUG; Short=mSUG1 gi|68630545|sp|P62194|PRS8_BOVIN RecName: Full=26S protease regulatory subunit 8; AltName: Full=26S proteasome AAA-ATPase subunit RPT6; AltName: Full=Proteasome 26S subunit ATPase 5; AltName: Full=Proteasome subunit p45; AltName: Full=p45/SUG gi|1165125|emb|CAA90961.1| mSUG1 protein [Mus musculus] gi|1262433|emb|CAA61863.1| 26S protease subunit [Sus scrofa] gi|1395177|dbj|BAA11938.1| proteasomal ATPase (rat SUG1) [Rattus norvegicus] gi|2564003|dbj|BAA22933.1| proteasome p45/SUG [Rattus norvegicus] gi|3193258|gb|AAC19266.1| proteasome subunit SUG1 [Bos taurus] gi|12804959|gb|AAH01932.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 5 [Homo sapiens] gi|32425744|gb|AAH02367.3| Proteasome (prosome, macropain) 26S subunit, ATPase, 5 [Homo sapiens] gi|37231718|gb|AAH58462.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 5 [Rattus norvegicus] gi|74183188|dbj|BAE22539.1| unnamed protein product [Mus musculus] gi|74216976|dbj|BAE26599.1| unnamed protein product [Mus musculus] gi|90075232|dbj|BAE87296.1| unnamed protein product [Macaca fascicularis] gi|119614678|gb|EAW94272.1| proteasome (prosome, macropain) 26S subunit, ATPase, 5, isoform CRA_c [Homo sapiens] gi|123242266|emb|CAM23783.1| protease (prosome, macropain) 26S subunit, ATPase 5 [Mus musculus] gi|123982762|gb|ABM83122.1| proteasome (prosome, macropain) 26S subunit, ATPase, 5 [synthetic construct] gi|123997431|gb|ABM86317.1| proteasome (prosome, macropain) 26S subunit, ATPase, 5 [synthetic construct] gi|148702335|gb|EDL34282.1| protease (prosome, macropain) 26S subunit, ATPase 5, isoform CRA_a [Mus musculus] gi|148877455|gb|AAI46196.1| Proteasome (prosome, macropain) 26S subunit, ATPase, 5 [Bos taurus] gi|158257188|dbj|BAF84567.1| unnamed protein product [Homo sapiens] gi|208967154|dbj|BAG73591.1| proteasome (prosome, macropain) 26S subunit ATPase 5 [synthetic construct] gi|296476226|gb|DAA18341.1| 26S protease regulatory subunit 8 [Bos taurus] Length = 406 Score = 44.9 bits (104), Expect = 0.055, Method: Composition-based stats. Identities = 43/262 (16%), Positives = 81/262 (30%), Gaps = 32/262 (12%) Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP----TKELYITKS 455 K K + G +D + + + L K + Sbjct: 81 DKKKVLVKVHPEGKFVVDVDKNIDINDV---TPNCRVALRNDSYTLHKILPNKVDPLVSL 137 Query: 456 TGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGV 509 V + L E +EV++ +G+A + + + G Sbjct: 138 MMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIA------QPKGVLLYGP 191 Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569 G+GK+ L + + + I S+++Q E + L + I +E Sbjct: 192 PGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDE 250 Query: 570 NDEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625 D I +++++ +GGD R L E+ + + N+ + D A R Sbjct: 251 IDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DSALLR 307 Query: 626 --RY-IVIPFDKPIANRDASFA 644 R I F P N +A Sbjct: 308 PGRIDRKIEF--PPPNEEARLD 327 >gi|312596881|ref|NP_001186092.1| 26S protease regulatory subunit 8 isoform 2 [Homo sapiens] gi|114669874|ref|XP_001149920.1| PREDICTED: similar to mSUG1 protein isoform 9 [Pan troglodytes] gi|297273393|ref|XP_002800611.1| PREDICTED: 26S protease regulatory subunit 8-like isoform 3 [Macaca mulatta] gi|332848822|ref|XP_001149845.2| PREDICTED: 26S protease regulatory subunit 8 isoform 8 [Pan troglodytes] gi|1262435|emb|CAA61864.1| put. 26S protease subunit [Sus scrofa] gi|119614676|gb|EAW94270.1| proteasome (prosome, macropain) 26S subunit, ATPase, 5, isoform CRA_b [Homo sapiens] gi|119614677|gb|EAW94271.1| proteasome (prosome, macropain) 26S subunit, ATPase, 5, isoform CRA_b [Homo sapiens] gi|158254952|dbj|BAF83447.1| unnamed protein product [Homo sapiens] Length = 398 Score = 44.9 bits (104), Expect = 0.055, Method: Composition-based stats. Identities = 43/262 (16%), Positives = 81/262 (30%), Gaps = 32/262 (12%) Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP----TKELYITKS 455 K K + G +D + + + L K + Sbjct: 73 DKKKVLVKVHPEGKFVVDVDKNIDINDV---TPNCRVALRNDSYTLHKILPNKVDPLVSL 129 Query: 456 TGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGV 509 V + L E +EV++ +G+A + + + G Sbjct: 130 MMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIA------QPKGVLLYGP 183 Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569 G+GK+ L + + + I S+++Q E + L + I +E Sbjct: 184 PGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDE 242 Query: 570 NDEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625 D I +++++ +GGD R L E+ + + N+ + D A R Sbjct: 243 IDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DSALLR 299 Query: 626 --RY-IVIPFDKPIANRDASFA 644 R I F P N +A Sbjct: 300 PGRIDRKIEF--PPPNEEARLD 319 >gi|976227|dbj|BAA07919.1| 26S proteasome subunit p45 [Homo sapiens] gi|1096205|prf||2111282A 26S proteasome Length = 406 Score = 44.9 bits (104), Expect = 0.055, Method: Composition-based stats. Identities = 43/262 (16%), Positives = 81/262 (30%), Gaps = 32/262 (12%) Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP----TKELYITKS 455 K K + G +D + + + L K + Sbjct: 81 DKKKVLVKVHPEGKFVVDVDKNIDINDV---TPNCRVALRNDSYTLHKILPNKVDPLVSL 137 Query: 456 TGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGV 509 V + L E +EV++ +G+A + + + G Sbjct: 138 MMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIA------QPKGVLLYGP 191 Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569 G+GK+ L + + + I S+++Q E + L + I +E Sbjct: 192 PGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDE 250 Query: 570 NDEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625 D I +++++ +GGD R L E+ + + N+ + D A R Sbjct: 251 IDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DSALLR 307 Query: 626 --RY-IVIPFDKPIANRDASFA 644 R I F P N +A Sbjct: 308 PGRIDRKIEF--PPPNEEARLD 327 >gi|312372820|gb|EFR20697.1| hypothetical protein AND_19657 [Anopheles darlingi] Length = 389 Score = 44.9 bits (104), Expect = 0.055, Method: Composition-based stats. Identities = 42/285 (14%), Positives = 87/285 (30%), Gaps = 36/285 (12%) Query: 358 FLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSI 417 + V L EE + + +++ + + E + I Sbjct: 45 QRNELNAKVRMLREELQLLQEQGSYVGEVVKPMDKKKVLVKV--------HPEGKFVVDI 96 Query: 418 TS--DLLDSSSR-FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVS 474 D+ D + + ++ L K + + P E + Sbjct: 97 DKNIDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIK 156 Query: 475 GYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 +EV++ +G+A + + + G G+GK+ L + + Sbjct: 157 EI---KEVIELPVKHPELFDALGIA------QPKGVLLYGPPGTGKTLLARAVAH-HTEC 206 Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588 I S+++Q E + L + I +E D I +++I+ +GGD Sbjct: 207 TFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEV 266 Query: 589 AR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR--RY 627 R L E+ + + N+ + D A R R Sbjct: 267 QRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DPALLRPGRI 308 >gi|283975430|gb|ADB55714.1| non-structural protein [Aleutian mink disease virus] Length = 641 Score = 44.9 bits (104), Expect = 0.056, Method: Composition-based stats. Identities = 28/154 (18%), Positives = 43/154 (27%), Gaps = 20/154 (12%) Query: 458 TPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTL 517 F E E + L + +E+ Y + + L + I G GG+GK+ L Sbjct: 385 VKFNEEEDDKPLLTTIQDMGLNEQ---YLKKVLCTILTKQGGKRGCIWFYGPGGTGKTLL 441 Query: 518 MNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK 577 +LI A N ++ N I+ E Sbjct: 442 ASLICKATVNYGMVTT-------------SNPNFPRTDCGNRNIIWAEECGNLGNWVED- 487 Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPN 611 K +TGG + S I N Sbjct: 488 FKAITGGGDIKVDTKNKQPQS---IKGCVVITSN 518 >gi|225712564|gb|ACO12128.1| 26S protease regulatory subunit 8 [Lepeophtheirus salmonis] gi|290462495|gb|ADD24295.1| 26S protease regulatory subunit 8 [Lepeophtheirus salmonis] gi|290561817|gb|ADD38306.1| 26S protease regulatory subunit 8 [Lepeophtheirus salmonis] Length = 410 Score = 44.9 bits (104), Expect = 0.056, Method: Composition-based stats. Identities = 48/354 (13%), Positives = 102/354 (28%), Gaps = 47/354 (13%) Query: 312 NKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMN-FLVSMKEDVFDLS 370 N + S+ ++ Y K ++ + + V L Sbjct: 4 NPRLISMETDEVVKRPSEGLRTYYVTKIEELGQTVANKNQNLRRLEAQRNELNAKVRMLR 63 Query: 371 EEPEDNNKNSKSPRFWFNTDYRRQNVEE----NSKAKSTAQSLEAGSIFSITSDLLDSSS 426 EE + + +++ + + ++++ G I L + S Sbjct: 64 EELQLLQEQGSYVGEVVKAMDKKKVLVKVHPEGKFVVDIDKNIDIGEITPNCRVALRNDS 123 Query: 427 RFLG--EQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMD 484 L + + + + P E + +EV++ Sbjct: 124 YALHKILPNKV-----------DPLVSLMMVEKVPDSTYEMVGGLDKQIKEI---KEVIE 169 Query: 485 Y------FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538 +G+A + + + G G+GK+ L + + I S++ Sbjct: 170 LPVKHPELFDALGIA------QPKGVLLYGPPGTGKTLLARAVAH-HTECTFIRVSGSEL 222 Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARL-----NY 593 +Q E + L + I +E D I +A+I+ +GG + Sbjct: 223 VQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARIESGSGGGDSEVQRTMLELLN 282 Query: 594 GNTYSESPASFTPFIVPNKHLFVRNPDDAWWR--RY-IVIPFDKPIANRDASFA 644 E+ + + N+ + D A R R I F P N +A Sbjct: 283 QLDGFEATKNIKVIMATNRIDIL---DSALLRPGRIDRKIEF--PPPNEEARLD 331 >gi|56758410|gb|AAW27345.1| SJCHGC09272 protein [Schistosoma japonicum] Length = 430 Score = 44.9 bits (104), Expect = 0.058, Method: Composition-based stats. Identities = 54/342 (15%), Positives = 103/342 (30%), Gaps = 50/342 (14%) Query: 336 KDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNS----KSPRFWFNTDY 391 K + +I++ + + + V L EE + + + + Sbjct: 51 KIDEHQFIYTEKVLNLRRLEAQ-RNELNAKVRMLREELQLLQEQGSFVGEVIKAMDKKKV 109 Query: 392 RRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELY 451 + E +++E I L S S L K+ P+K Sbjct: 110 LVKVQPEGKYVVDIDKNIEMSQISPNCRVALRSDSYIL------------HKILPSKVDP 157 Query: 452 ITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIH 505 + V + L E +EV++ +G+A + + Sbjct: 158 LVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFDALGIA------QPKGVL 211 Query: 506 IRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIIS 565 + G G+GK+ L + + I S +Q E + L + I Sbjct: 212 LYGPPGTGKTLLARAVAH-HTECTFIRVSGSRAVQKFIGEGARMVRELFVMAREHAPSII 270 Query: 566 ETNENDEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDD 621 +E D I + +++ TGGD R L E + + N+ + D Sbjct: 271 FMDEVDSIGSTRLESGTGGDSEVQRTMLELLNQLDGFEPKQNIKVIMATNRIDIL---DS 327 Query: 622 AWWR--RY-IVIPFDKP----------IANRDASFAQKLETK 650 A R R I F P I +R + + ++ + Sbjct: 328 ALLRPGRIDRKIEFPAPNEEARLDILRIHSRKMNLTRDIDLR 369 >gi|170742124|ref|YP_001770779.1| hypothetical protein M446_3980 [Methylobacterium sp. 4-46] gi|168196398|gb|ACA18345.1| conserved hypothetical protein [Methylobacterium sp. 4-46] Length = 728 Score = 44.9 bits (104), Expect = 0.059, Method: Composition-based stats. Identities = 32/319 (10%), Positives = 84/319 (26%), Gaps = 47/319 (14%) Query: 4 MQWKEQAKQAIHNGFKLIPLR---LGDKRPQ-RLGKWEEQLLSSEKIDKLPACGFGFVCG 59 + WK + + +P R K W + + ++ A G G+ Sbjct: 25 LVWKWEPNK--KGKSTKVPYRADAPNVKGSSTDRRTWSDYATAVRAVEAGRADGIGYAL- 81 Query: 60 VGEQPLYAFDIDSKDEKTANTFKDTFEILH----GTPIVRIGQKPKILIPFRMNKEGIKK 115 + AFD+D+ ++ + L V + +I + E ++ Sbjct: 82 -HGGEVAAFDLDNCRDRETHEIAPWALKLLERAQSYAEVTPSGEGIRIIGRAIGDEVHRR 140 Query: 116 KKTTESTQGHLD-ILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLF 174 ++ +T G ++ G++ + D P + E + Sbjct: 141 QRVPMTTDGAVETFRRAGRFITVTGDV-----------------LLDAPEALAQLDEVID 183 Query: 175 KFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVM 234 + + + + + ++ T + + G +D + Sbjct: 184 ETVAALDE---AKRAEKVAERGACREAEQEVTRQSKGERTADGAGSQIYGGYDSLPRELY 240 Query: 235 AVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKR-----STFTS 289 + G+ S + + + K + ++I + Sbjct: 241 KLIRFGPGAG---------SDRSAAFHHAVCWLKDYGWSVDKIEALMAAHPRGVAEKYEG 291 Query: 290 LFYHHGKLIPKGLLASRFS 308 + A R + Sbjct: 292 RLRAEIERSWDKGDAPRQT 310 >gi|12958170|gb|AAK09273.1|AF293960_3 putative replication protein E1 [Human papillomavirus type 84] Length = 650 Score = 44.9 bits (104), Expect = 0.059, Method: Composition-based stats. Identities = 23/178 (12%), Positives = 54/178 (30%), Gaps = 19/178 (10%) Query: 486 FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545 F + L G K + G +GKS + G + ++ Sbjct: 454 FMTALKQFLKGTPKKG-CLVFYGPSDTGKSLFCMSLINYLGGTVISFVNST--------- 503 Query: 546 AGKANPSLIRLMGSRIVIISETNENDEI-NAAKIKQMTGGDCMTARLNYGNTYSESPASF 604 ++ L L ++I ++ + I ++ + G+ ++ + N Sbjct: 504 ---SHFWLSPLADAKIGLLDDATYQCWIYMDTYLRSVLDGNVISVDRKHKNLVQLKCPP- 559 Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPF-DKPIANRDASFAQKLETKYTLEAKK--WF 659 I N + + R ++ PF +K + + +L + + W Sbjct: 560 -LLITTNINPETDDTFKYLRSRMVIFPFLNKCPLDANGDPVYQLNNENWKSFFRRSWA 616 >gi|9628279|ref|NP_042872.1| hypothetical protein [Aleutian mink disease virus] gi|1353227|sp|P24030|VNCS_ADVG RecName: Full=Non-capsid protein NS-1; AltName: Full=NCVP1; AltName: Full=Non-structural protein NS1 gi|808725|gb|AAA66612.1| unknown protein [Aleutian mink disease virus] Length = 590 Score = 44.9 bits (104), Expect = 0.059, Method: Composition-based stats. Identities = 51/358 (14%), Positives = 97/358 (27%), Gaps = 59/358 (16%) Query: 279 DTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKA------ 332 + R+ ++ G P + YNK + + F+Y + Sbjct: 172 KDPEDRAKNLKVWIEDGPTKPYKYFNKQTKQDYNKPVH--LRDYTFIYLFNKDKINTDSM 229 Query: 333 -WYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPED--------NNKNSKSP 383 Y N + +LT + +L D+ D + + ED + +S + Sbjct: 230 DGYFAAGNGGIVDNLTNKERKTLRKMYLDEQSSDIMDANIDWEDGQDAPKVTDQTDSATT 289 Query: 384 RFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGE------------ 431 + + ++ + SK + + LD+ Sbjct: 290 KTGTSLIWKSCATKVTSKKEVANPVQQPSKKLYSAQSTLDALFNVGCFTPEDMIIKQSDK 349 Query: 432 -------QDGILDLETGQKVKPTKELYITKSTGTP----FVEGEPSQEFLDLVSGYFESE 480 +G + + + T T F E E + L + +E Sbjct: 350 YLELSLEPNGP--QKINTLLHMNQVKTSTMITAFDCIIKFNEEEDDKPLLATIKDMGLNE 407 Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540 + Y + + L + I G GG+GK+ L +LI A N ++ Sbjct: 408 Q---YLKKVLCTILTKQGGKRGCIWFYGPGGTGKTLLASLICKATVNYGMVTT------- 457 Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598 N I+ E K +TGG + S Sbjct: 458 ------SNPNFPWTDCGNRNIIWAEECGNFGNWVED-FKAITGGGDVKVDTKNKQPQS 508 >gi|237643631|ref|YP_002884321.1| DNA helicase [Bombyx mandarina nucleopolyhedrovirus] gi|229358177|gb|ACQ57272.1| DNA helicase [Bombyx mandarina nucleopolyhedrovirus] Length = 1222 Score = 44.9 bits (104), Expect = 0.059, Method: Composition-based stats. Identities = 46/362 (12%), Positives = 111/362 (30%), Gaps = 39/362 (10%) Query: 279 DTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDK 338 D + + L + LI + + F F + Y Sbjct: 715 DMFGNDAELSKLIWM---LIFTNKTYVSTTLIRTNSEFVNQHGEFFFKEHNKIIQYLYQT 771 Query: 339 NNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEE 398 + + L FL +++DV + ++ +F+ + +++ Sbjct: 772 IHKIEYVDMLMDKFNDKRLFLTELRDDVAREPDV--QFEESDNICKFYTHHTDALIILKK 829 Query: 399 NSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGT 458 + I + ++D L + I+ + + + G Sbjct: 830 YNVWWD-------KIILARSTDDLPT--WLTRFYMRII-MSKMDLKEYSYNYLKKIVEGY 879 Query: 459 PFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTL 517 + F + F + +L + + ++ I++ G GSGKS+ Sbjct: 880 LY--------FKRFTN--FNHANAI--MLMHFAASLAIPVDYGKKAIYMPGEPGSGKSSF 927 Query: 518 MNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIV-IISETNENDEINAA 576 L+ Y + +G++N S++ + NE + + + Sbjct: 928 FELLDYLV----------LMHKFDDDNHSGESNKETSDKEVSKLNSQLYVINELKQCSES 977 Query: 577 KIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI 636 K+ ++ + A++ IV NK L+V + DD R++++ + Sbjct: 978 YFKKHADSSKSDSKSRKYQGLLKYEANYKMLIVNNKPLYVDDYDDGVQDRFLIVYTNHKF 1037 Query: 637 AN 638 + Sbjct: 1038 VD 1039 >gi|452705|emb|CAA54349.1| NS-1 [Aleutian mink disease virus] Length = 641 Score = 44.9 bits (104), Expect = 0.060, Method: Composition-based stats. Identities = 51/375 (13%), Positives = 99/375 (26%), Gaps = 57/375 (15%) Query: 279 DTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKA------ 332 + R+ ++ G P + YNK + + F+Y + Sbjct: 172 KDPEDRAKNLKVWVEDGPTKPYKYFNKQTKQDYNKPVH--LRDYTFIYLFNKDKINTDSM 229 Query: 333 -WYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPED--------NNKNSKSP 383 Y N + +LT + +L D+ D + + ED + +S + Sbjct: 230 DGYFAAGNGGIVDNLTNKERKTLRKMYLDEQSSDIMDANIDWEDGQDAPKVTDQTDSATT 289 Query: 384 RFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGE------------ 431 + + ++ + SK + + + LD+ Sbjct: 290 KTGTSLIWKSCATKVTSKKEVANPVQQPSKKLYSAQNTLDALFNVGCFTPEDMIIKQSDK 349 Query: 432 -------QDG--ILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEV 482 +G ++ T + F E E + L + +E+ Sbjct: 350 YLELSLEPNGPQKINTLLHMNQVKTSTMMTAFDCIIKFNEEEDDKPLLATIKDMGLNEQ- 408 Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542 Y + + L + I G GG+GK+ L +LI A N ++ Sbjct: 409 --YLKKVLCTILTKQGGKRGCIWFYGPGGTGKTLLASLICKATVNYGMVTT--------- 457 Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602 N I+ E K +TGG + +S Sbjct: 458 ----SNPNFPWTDCGNRNIIWAEECGNLGNWVED-FKAITGGGDVKVDTKNKQP--QSIK 510 Query: 603 SFTPFIVPNKHLFVR 617 V Sbjct: 511 GCVIVTSNTNITKVT 525 >gi|9630898|ref|NP_047495.1| DNA Helicase [Bombyx mori NPV] gi|3745917|gb|AAC63764.1| DNA Helicase [Bombyx mori NPV] Length = 1222 Score = 44.9 bits (104), Expect = 0.061, Method: Composition-based stats. Identities = 45/362 (12%), Positives = 110/362 (30%), Gaps = 39/362 (10%) Query: 279 DTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDK 338 D + + L + LI + + F F + Y Sbjct: 715 DMFGNDAELSKLIWM---LIFTNKTYVSTTLIRTNSEFVNQHGEFFFKEHNKIIQYLYQT 771 Query: 339 NNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEE 398 + + L FL +++DV + ++ +F+ + +++ Sbjct: 772 IHKIEYVDMLMDKFNDKRLFLTELRDDVAREPDV--QFEESDNICKFYTHHTDALIILKK 829 Query: 399 NSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGT 458 + I + ++D L + I+ + + + G Sbjct: 830 YNVWWD-------KIILARSTDDLPT--WLTRFYMRII-MSKMDLKEYSYNYLKKIVEGY 879 Query: 459 PFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTL 517 + F + + +L + + ++ I++ G GSGKS+ Sbjct: 880 LY--------FKRFTNFNHANA----IMLMHFAASLAIPVDYGKKAIYMPGEPGSGKSSF 927 Query: 518 MNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIV-IISETNENDEINAA 576 L+ Y + +G++N S++ + NE + + + Sbjct: 928 FELLDYLV----------LMHKFDDDNHSGESNKETSDKEVSKLNSQLYVINELKQCSES 977 Query: 577 KIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI 636 K+ ++ + A++ IV NK L+V + DD R++++ + Sbjct: 978 YFKKHADSSKSDSKSRKYQGLLKYEANYKMLIVNNKPLYVDDYDDGVQDRFLIVYTNHKF 1037 Query: 637 AN 638 + Sbjct: 1038 VD 1039 >gi|295398108|ref|ZP_06808157.1| DNA primase domain protein [Aerococcus viridans ATCC 11563] gi|294973627|gb|EFG49405.1| DNA primase domain protein [Aerococcus viridans ATCC 11563] Length = 440 Score = 44.9 bits (104), Expect = 0.061, Method: Composition-based stats. Identities = 47/278 (16%), Positives = 81/278 (29%), Gaps = 35/278 (12%) Query: 396 VEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILD--LETGQKVKPTKELYIT 453 +E ++ + + +D Q+ I D + Q Sbjct: 55 FDEFARIPTINKRPIDEMHLKSLRVKIDDEYNLKFVQNDIEDVVMTIAQDKPYHPIKEFI 114 Query: 454 KSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCV----GMALLGGNKAQRFIHIRGV 509 ++ V+ S F+D + G + E + R + G K + + G Sbjct: 115 EAKPWDGVKRVES-LFIDYL-GATDDEYNREVAKRWLCGGIARIYYPGIKFEIVPILEGS 172 Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569 G+GKSTL G +V G+ L+G+ IV +SE Sbjct: 173 QGAGKSTLAG---KLAGKYFVDTL----------KGMGQHKDDNQLLIGAWIVELSELAS 219 Query: 570 NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIV 629 + K RL Y S P + T N ++ + RR+ Sbjct: 220 LRKSEIENTKGFLSSSEDKVRLPYEKNVSTLPRTNTFIGTTNATEYLTDFTG--NRRFFP 277 Query: 630 IPFD------KPIANRDASFAQ------KLETKYTLEA 655 IP + P D + Q L + + Sbjct: 278 IPLEDDSATKSPFDMTDDTIQQIWAEAKHLYFEEKAKI 315 >gi|120610295|ref|YP_969973.1| virulence-associated E family protein [Acidovorax citrulli AAC00-1] gi|120588759|gb|ABM32199.1| virulence-associated E family protein [Acidovorax citrulli AAC00-1] Length = 892 Score = 44.9 bits (104), Expect = 0.061, Method: Composition-based stats. Identities = 29/187 (15%), Positives = 52/187 (27%), Gaps = 28/187 (14%) Query: 458 TPFVEGEPSQEFLDLVSGYFES------EEVMDYFTRCVGMALLGGN--------KAQRF 503 + + + + Y L+G K Sbjct: 539 VKAQQWDEVPRLEKWLVHVLGKTPDDYKPRRLRYLQLVGKYILMGHVARVMEPGCKFDYS 598 Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVI 563 + + G GG GKSTL+N + D + + G S ++ G Sbjct: 599 VVLEGTGGIGKSTLINTLVGL------------DFFSDTHFDIGTGKDSYEQIAGIVAYE 646 Query: 564 ISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAW 623 +SE +A +K R YG + P + NK ++ + Sbjct: 647 LSEMTAFRRADAEAVKAFFSSRKDRYRGAYGRYVQDHPRQVVIWCTTNKRQYLFDITG-- 704 Query: 624 WRRYIVI 630 RR+ + Sbjct: 705 NRRFWPV 711 >gi|45361563|ref|NP_989358.1| proteasome (prosome, macropain) 26S subunit, ATPase, 5 [Xenopus (Silurana) tropicalis] gi|39850038|gb|AAH64153.1| hypothetical protein MGC75584 [Xenopus (Silurana) tropicalis] Length = 414 Score = 44.9 bits (104), Expect = 0.062, Method: Composition-based stats. Identities = 43/262 (16%), Positives = 81/262 (30%), Gaps = 32/262 (12%) Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP----TKELYITKS 455 K K + G +D + + + L K + Sbjct: 89 DKKKVLVKVHPEGKFVVDIDKNIDINDV---TPNCRVALRNDSYTLHKILPNKVDPLVSL 145 Query: 456 TGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGV 509 V + L E +EV++ +G+A + + + G Sbjct: 146 MMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIA------QPKGVLLYGP 199 Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569 G+GK+ L + + + I S+++Q E + L + I +E Sbjct: 200 PGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDE 258 Query: 570 NDEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625 D I +++++ +GGD R L E+ + + N+ + D A R Sbjct: 259 IDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DSALLR 315 Query: 626 --RY-IVIPFDKPIANRDASFA 644 R I F P N +A Sbjct: 316 PGRIDRKIEF--PPPNEEARLD 335 >gi|299472009|emb|CBN80092.1| conserved unknown protein [Ectocarpus siliculosus] Length = 398 Score = 44.5 bits (103), Expect = 0.063, Method: Composition-based stats. Identities = 45/281 (16%), Positives = 84/281 (29%), Gaps = 30/281 (10%) Query: 372 EPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGE 431 + + + Y + V+ K K + G +D + Sbjct: 45 NAKVRLLREELHHLQESGSYVGEVVKAMGKKKVLVKVNPEGKYVVDIDKDIDVNK---CT 101 Query: 432 QDGILDLETGQKVKP----TKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDY-- 485 + + L V TK + V L E +EV++ Sbjct: 102 PNTRVALRNDSYVLHKILPTKVDPLVSLMKVEKVPDSTYDMIGGLEKQIREIKEVIELPI 161 Query: 486 ----FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQN 541 +G+A + + + G G+GK+ L + + + I S+++Q Sbjct: 162 KHPELFESLGVA------QPKGVLLYGPPGTGKTLLARAVAH-HTDCTFIRVSGSELVQK 214 Query: 542 RPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR----LNYGNTY 597 E + L + I +E D I +++++ GGD R L Sbjct: 215 YIGEGSRMVRELFVMAREAAPSIIFMDEIDSIGSSRVEGSEGGDSEVQRTMLELLNQLDG 274 Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWR--RY-IVIPFDKP 635 E + + N+ + D A R R I F P Sbjct: 275 FEPTQNIKVVMATNRIDIL---DPALLRPGRIDRKIEFPHP 312 >gi|91217110|ref|ZP_01254072.1| hypothetical protein P700755_03918 [Psychroflexus torquis ATCC 700755] gi|91184710|gb|EAS71091.1| hypothetical protein P700755_03918 [Psychroflexus torquis ATCC 700755] Length = 424 Score = 44.5 bits (103), Expect = 0.063, Method: Composition-based stats. Identities = 24/168 (14%), Positives = 48/168 (28%), Gaps = 22/168 (13%) Query: 28 KRPQRLGKWEEQLLSSEKIDK-----LPACGFGFVCGVGEQPLYAFDIDSKDEK--TANT 80 K P +W S ++ID P G L DID ++ Sbjct: 38 KTPSH--EWTNLFDSKQEIDDLNRFNWPNS-VGIGTFTYWSDLVVIDIDGCNDINFLKQI 94 Query: 81 FKDTFEILHGTPIVRIGQKPKILIPFRMNK----------EGIKKKKTTESTQGHLDILG 130 + +V+ G K I + ++ K E ++ L Sbjct: 95 LRQLNLPSDYEWVVQSGSKNGFHIYYLGDQIDECGEDDVVSAFPPKSQFERYVDKIEFLW 154 Query: 131 CGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQ 178 + V + +Y++ + + +E +++ KF Sbjct: 155 R-THTVLPPSVHGSGNKYSFLNNEFPKNKPEE-IDTETIYDFIDKFLD 200 >gi|256352178|ref|YP_003104799.1| E1 [Francolinus leucoscepus papillomavirus 1] gi|161334761|gb|ABX61087.1| E1 [Francolinus leucoscepus papillomavirus 1] Length = 658 Score = 44.5 bits (103), Expect = 0.064, Method: Composition-based stats. Identities = 38/303 (12%), Positives = 81/303 (26%), Gaps = 50/303 (16%) Query: 349 DKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQS 408 + M+ L + ++ + + DNN + + + ++ KS +Q+ Sbjct: 336 WCRDITGMSQLSGDQFELSKMIQWALDNNYSDEGAISFHYAIQAETDMNAQLWLKSNSQA 395 Query: 409 LEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE 468 ++ + + GQ E +I + + Sbjct: 396 RFVRDCAAM-----------------VRHYKRGQLHAMDMEEFIASRVKHFADASDEGWK 438 Query: 469 ----FLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524 FL F + + L G K GV SGKS Sbjct: 439 PILVFLRFQHVPLPD------FLQMLRYWLKGRPKKSTIAI-VGVPDSGKSMF------- 484 Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISET--NENDEINAAKIKQMT 582 ++ + K++ L L ++ +I + D ++ ++ Sbjct: 485 -----CMSLNQFLDGRVLSFSNSKSHFWLQPLSEAKTALIDDLTRPAWDYLDI-YLRNAL 538 Query: 583 GGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDA-----WWRRYIVIPFDKPIA 637 G+ ++ + + N + R I F +PI Sbjct: 539 DGNPISIDCKHRAPMQIKCPP--LLLTSNVDPRAPDSTGCAGYKYLTNRIAFITFGRPIP 596 Query: 638 NRD 640 RD Sbjct: 597 LRD 599 >gi|225021042|ref|ZP_03710234.1| hypothetical protein CORMATOL_01054 [Corynebacterium matruchotii ATCC 33806] gi|224946182|gb|EEG27391.1| hypothetical protein CORMATOL_01054 [Corynebacterium matruchotii ATCC 33806] Length = 150 Score = 44.5 bits (103), Expect = 0.065, Method: Composition-based stats. Identities = 19/117 (16%), Positives = 38/117 (32%), Gaps = 18/117 (15%) Query: 22 PLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDS---KDEKTA 78 P+ P K E + + + P G + G L D+D + K A Sbjct: 15 PIAP-TGSPASTTKPETW-TTHDAVQDGPH---GVMLG---GGLACIDLDHCISRRGKVA 66 Query: 79 NTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYF 135 + + + G + R + + L F + E +G ++I ++ Sbjct: 67 DWAIEIIRAVPGAVVERSVSR-RGLHIFGLLPE------GPGRRRGCVEIYSRARFI 116 >gi|313159248|gb|EFR58617.1| VirE N-terminal domain protein [Alistipes sp. HGB5] Length = 314 Score = 44.5 bits (103), Expect = 0.065, Method: Composition-based stats. Identities = 23/215 (10%), Positives = 50/215 (23%), Gaps = 30/215 (13%) Query: 64 PLYAFDIDSKD-----EKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKT 118 DID KD + + + + + L Sbjct: 99 GFICIDIDHKDNGVFGPEWFDKKRLVAKTFDSLLCASMSISGNGLYLIFRIAHPDMHLA- 157 Query: 119 TESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQ 178 + +I Y T D L + + + Sbjct: 158 -QFDALVREI-------------------YEKTGLVADQGCCDVCRLRGASYDA-YPYIN 196 Query: 179 EITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYN--GSHDEWIPVVMAV 236 P K ++ + ++ + EE + + +W + A+ Sbjct: 197 PHAKPYRGVLKERTARAKVRTAREKKLLDEKVYKLIQKIREEKKDITDDYHDWYCIGCAL 256 Query: 237 HHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDT 271 HE G +G + S Y + + ++ Sbjct: 257 AHEY-GKEEGLRLFHLVSMHSKKYYPTDCDEQFAK 290 >gi|119964606|ref|YP_950802.1| DNA helicase [Maruca vitrata MNPV] gi|119514449|gb|ABL76024.1| DNA helicase [Maruca vitrata MNPV] Length = 1224 Score = 44.5 bits (103), Expect = 0.066, Method: Composition-based stats. Identities = 40/359 (11%), Positives = 109/359 (30%), Gaps = 41/359 (11%) Query: 283 KRSTFTSLFYHHGKLIPKGLLAS--RFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNN 340 + + L + + + R + + F + Y + Sbjct: 716 NDTELSELIWMLIFNNRTYVSTALIRTNSDFVNQ-----HGEFFFKEHNRIIQYLYRTIH 770 Query: 341 VYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENS 400 + L FL +++DV + ++ +F+ + + +++ + Sbjct: 771 KIEYVDVLMGKFNDKRLFLTELRDDVAREPDV--QFEESDSVSKFYTHHADTLKILKKYN 828 Query: 401 KAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPF 460 I + ++D L + I+ + + + G + Sbjct: 829 VWWD-------KIILARSTDDLPT--WLTRFYMRII-MSKLDLKEYSYNYLKKIVEGYLY 878 Query: 461 VEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNL 520 F + + + + + ++ +++ G GSGKS+ L Sbjct: 879 --------FKRFTNFNHANANM---LMHFAASLAIPVDYGKKAVYMPGAPGSGKSSFFEL 927 Query: 521 IKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIV-IISETNENDEINAAKIK 579 + Y + +G++N S++ + NE + + + K Sbjct: 928 LDYLV----------LMHKFDDDNHSGESNKETSDKEVSKLNSQLYTINELKQCSESYFK 977 Query: 580 QMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN 638 + ++ + A++ IV NK L+V + DD R++++ + + Sbjct: 978 KHADSSKSDSKSRKYQGLLKYEANYKMLIVNNKPLYVDDYDDGVQDRFLIVYTNHKFVD 1036 >gi|283456314|ref|YP_003360878.1| bifunctional DNA primase/polymerase [Bifidobacterium dentium Bd1] gi|283102948|gb|ADB10054.1| bifunctional DNA primase/polymerase [Bifidobacterium dentium Bd1] Length = 942 Score = 44.5 bits (103), Expect = 0.067, Method: Composition-based stats. Identities = 26/155 (16%), Positives = 53/155 (34%), Gaps = 10/155 (6%) Query: 478 ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537 S + M C G ++ + ++ + G GG+GKS + + +G A Sbjct: 274 GSADAMRNLMLCWGAPIM-SSHPEKLYWLSGQGGTGKSQMSAALVRLYG---GTTASVEL 329 Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA-AKIKQMTGG-DCMTARLNYGN 595 + + P + A + L + + + E + +K + G + R + Sbjct: 330 LAK---PGSMSAENLMYNLQKANVGLFDEVGVKHFDDYWPAVKTLCTGLLPFSPRRRGED 386 Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVI 630 ++ TP N + A RR +I Sbjct: 387 ASADLGCRVTPIFTANVLPPL-GQSSADQRRACII 420 >gi|171742604|ref|ZP_02918411.1| hypothetical protein BIFDEN_01717 [Bifidobacterium dentium ATCC 27678] gi|171278218|gb|EDT45879.1| hypothetical protein BIFDEN_01717 [Bifidobacterium dentium ATCC 27678] Length = 942 Score = 44.5 bits (103), Expect = 0.067, Method: Composition-based stats. Identities = 26/155 (16%), Positives = 53/155 (34%), Gaps = 10/155 (6%) Query: 478 ESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537 S + M C G ++ + ++ + G GG+GKS + + +G A Sbjct: 274 GSADAMRNLMLCWGAPIM-SSHPEKLYWLSGQGGTGKSQMSAALVRLYG---GTTASVEL 329 Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA-AKIKQMTGG-DCMTARLNYGN 595 + + P + A + L + + + E + +K + G + R + Sbjct: 330 LAK---PGSMSAENLMYNLQKANVGLFDEVGVKHFDDYWPAVKTLCTGLLPFSPRRRGED 386 Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVI 630 ++ TP N + A RR +I Sbjct: 387 ASADLGCRVTPIFTANVLPPL-GQSSADQRRACII 420 >gi|90078576|dbj|BAE88968.1| unnamed protein product [Macaca fascicularis] Length = 398 Score = 44.5 bits (103), Expect = 0.068, Method: Composition-based stats. Identities = 43/261 (16%), Positives = 81/261 (31%), Gaps = 32/261 (12%) Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP----TKELYITKS 455 K K + G +D + + + L K + Sbjct: 73 DKKKVLVKVHPEGKFVVDVDKNIDINDV---TPNCRVALRNDSYTLHKILPNKVDPLVSL 129 Query: 456 TGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGV 509 V + L E +EV++ +G+A + + + G Sbjct: 130 MMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIA------QPKGVLLYGP 183 Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569 G+GK+ L + + + I S+++Q E + L + I +E Sbjct: 184 PGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDE 242 Query: 570 NDEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625 D I +++++ +GGD R L E+ + + N+ + D A R Sbjct: 243 IDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DSALLR 299 Query: 626 --RY-IVIPFDKPIANRDASF 643 R I F P N +A Sbjct: 300 PGRIDRKIEF--PPPNEEARL 318 >gi|41057570|ref|NP_958099.1| NS1 [Mythimna loreyi densovirus] gi|39726203|gb|AAR30037.1| NS1 [Mythimna loreyi densovirus] Length = 545 Score = 44.5 bits (103), Expect = 0.068, Method: Composition-based stats. Identities = 57/528 (10%), Positives = 144/528 (27%), Gaps = 53/528 (10%) Query: 135 FVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVP-----LVKDKK 189 VA ++ W+ + S+E+ +++ + +++ + K Sbjct: 36 VVAAPS-----RKREWSHGGRGT-MASIAKESQENFQHMAEELEKMGGEFFGYVTGQSIK 89 Query: 190 SIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEI 249 + + L +G NG + +H S + Sbjct: 90 PSSAYISDVIILRDIQLRDQCLDVLREYGRSRRNG-LFGFSEEGDHIHVIHDCSYTNRSC 148 Query: 250 ARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKL------IPKGLL 303 W Q + T + K+ + Y + +G Sbjct: 149 RDIWISQVKPFGSVQ-----KTGKPVKYIWEFKRTDWYDVFIYFFVRKRGERAIYIRGES 203 Query: 304 ASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMK 363 S+ +K+ + ++D +Y+ ++ I + + + + Sbjct: 204 GKIPSNDECVRWAREFKEREVVSSSDCTDYYECEQQEHKI-----SRRSDAGSTNGRLYE 258 Query: 364 EDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLD 423 + + + K R ++ + + + D Sbjct: 259 KKAYSAGKFAYIRQKTKALLRKYYVSPISAICDVPEFRDDDLLCDPKNRDYIQAACDDFG 318 Query: 424 SSSRFLGEQDGILDL---ETGQKVKPTKELYITKSTGTPFVEGEPS-QEFLDLVSGYFES 479 + ++ I DL + + Y + + E S +L+ Sbjct: 319 KDLNAMSLRE-IYDLLTEDCNFTDEKELNPYAQFISSMKYDNLEGSLNIIDELLKYQCND 377 Query: 480 EE--VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537 +E ++++ T V L + +GK+ ++I Sbjct: 378 DEGLIVEFLTNLVN-VLDRRVPKLNAFLVMSPPSAGKNFFFDMIFGLL------------ 424 Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG-NT 596 + + +A + N + ++ V++ + IK M GGD T R+ + Sbjct: 425 LSYGQLGQANRHNLFAFQEAPNKRVLLWNEPNYESSLTDTIKMMFGGDPYTVRVKNRMDA 484 Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFA 644 + + + N F+ A+ R I ++ +D Sbjct: 485 HVKRTP--VIILTNNTVPFMYET--AFADRIIQYKWNAAPFLKDYELK 528 >gi|304383183|ref|ZP_07365656.1| conserved hypothetical protein [Prevotella marshii DSM 16973] gi|304335654|gb|EFM01911.1| conserved hypothetical protein [Prevotella marshii DSM 16973] Length = 281 Score = 44.5 bits (103), Expect = 0.069, Method: Composition-based stats. Identities = 28/191 (14%), Positives = 58/191 (30%), Gaps = 24/191 (12%) Query: 473 VSGYFESE-EV-MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530 + F + E+ MDY L K + + +GKS +N +K F Sbjct: 79 IRHIFGEQYELGMDYLQLLY---LQPVQKLPILLMVSEERNTGKSMFLNFLKAVF----- 130 Query: 531 INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR 590 N + ++ + G ++++ E N ++ ++K ++ Sbjct: 131 QNNVTFNTNEDFRSQFNS------DWAGKLLIVVDEVLLNRREDSERLKNLSTTLSYKVE 184 Query: 591 LNYGN-TYSESPASFTPFIVPNKHLFVRNPDDA-WWRRYIVIPFDKPIANRDASFAQKLE 648 + A F + + + +W R I + + D F QKL Sbjct: 185 AKGKDRDEISFFAKFVLCSNNESLPVIIDMGETRYWVRKI-----NRLESDDTDFLQKL- 238 Query: 649 TKYTLEAKKWF 659 + Sbjct: 239 KTEIPAFLYFL 249 >gi|4574723|gb|AAD24183.1|AF131950_3 putative replication protein E1 [Human papillomavirus - cand85] Length = 648 Score = 44.5 bits (103), Expect = 0.071, Method: Composition-based stats. Identities = 23/193 (11%), Positives = 56/193 (29%), Gaps = 22/193 (11%) Query: 461 VEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNL 520 +G + + + F+ E + + R L G K I I G +GKS Sbjct: 430 DDGGDWKPIVQFLR--FQGIEFITFL-RAFKDFLKGTPKKN-CIVIYGPANTGKS----- 480 Query: 521 IKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEND-EINAAKIK 579 + ++ ++ L L ++I ++ + ++ Sbjct: 481 -------YFCMSLIQFLHGTVLSFVNSNSHFWLEPLTDTKIAMVDDATPTCWSYFDNYMR 533 Query: 580 QMTGGDCMTARLNYGNTYSESPASFTPFIVP-NKHLFVRNPDDAWWRRYIVIPFDKPIA- 637 G+ ++ + + P ++ N + + R V F Sbjct: 534 NALDGNPISIDRKHKHL---IQMKCPPMLITSNTNPATDDRWPYLRSRVTVFTFPHTFPF 590 Query: 638 NRDASFAQKLETK 650 + + + + K Sbjct: 591 DSNGNPVYDINDK 603 >gi|238018844|ref|ZP_04599270.1| hypothetical protein VEIDISOL_00704 [Veillonella dispar ATCC 17748] gi|237864610|gb|EEP65900.1| hypothetical protein VEIDISOL_00704 [Veillonella dispar ATCC 17748] Length = 804 Score = 44.5 bits (103), Expect = 0.071, Method: Composition-based stats. Identities = 32/177 (18%), Positives = 58/177 (32%), Gaps = 19/177 (10%) Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542 + V + G K I + G G GKS ++ + + N +++ + D Sbjct: 495 RKWMCGAVARVMDPGVKFDTAIVLYGSQGLGKSLILERLGRKWFNNSLVDIKTKD----- 549 Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602 +L ++ GS IV ++E + + K R YG E P Sbjct: 550 ---------ALEQIQGSWIVELAELAPTYKNDNEIDKAFISRTSDRFRSPYGRRTEEYPR 600 Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWF 659 N +F+++ RR+ I DK +R + L + Sbjct: 601 QCVFAGSTNNLMFLKDRTG--NRRFWPITGDK---DRKTKHSWDLSKDEIDQLWAEA 652 >gi|148702336|gb|EDL34283.1| protease (prosome, macropain) 26S subunit, ATPase 5, isoform CRA_b [Mus musculus] Length = 326 Score = 44.5 bits (103), Expect = 0.071, Method: Composition-based stats. Identities = 39/231 (16%), Positives = 74/231 (32%), Gaps = 29/231 (12%) Query: 431 EQDGILDLETGQKVKP----TKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDY- 485 + + L K + V + L E +EV++ Sbjct: 29 TPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELP 88 Query: 486 -----FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540 +G+A + + + G G+GK+ L + + + I S+++Q Sbjct: 89 VKHPELFEALGIA------QPKGVLLYGPPGTGKTLLARAVAH-HTDCTFIRVSGSELVQ 141 Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR----LNYGNT 596 E + L + I +E D I +++++ +GGD R L Sbjct: 142 KFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLD 201 Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWR--RY-IVIPFDKPIANRDASFA 644 E+ + + N+ + D A R R I F P N +A Sbjct: 202 GFEATKNIKVIMATNRIDIL---DSALLRPGRIDRKIEF--PPPNEEARLD 247 >gi|114669864|ref|XP_001149426.1| PREDICTED: similar to mSUG1 protein isoform 3 [Pan troglodytes] Length = 433 Score = 44.5 bits (103), Expect = 0.071, Method: Composition-based stats. Identities = 39/231 (16%), Positives = 74/231 (32%), Gaps = 29/231 (12%) Query: 431 EQDGILDLETGQKVKP----TKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDY- 485 + + L K + V + L E +EV++ Sbjct: 136 TPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELP 195 Query: 486 -----FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540 +G+A + + + G G+GK+ L + + + I S+++Q Sbjct: 196 VKHPELFEALGIA------QPKGVLLYGPPGTGKTLLARAVAH-HTDCTFIRVSGSELVQ 248 Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR----LNYGNT 596 E + L + I +E D I +++++ +GGD R L Sbjct: 249 KFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLD 308 Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWR--RY-IVIPFDKPIANRDASFA 644 E+ + + N+ + D A R R I F P N +A Sbjct: 309 GFEATKNIKVIMATNRIDIL---DSALLRPGRIDRKIEF--PPPNEEARLD 354 >gi|114669876|ref|XP_001149010.1| PREDICTED: similar to mSUG1 protein isoform 1 [Pan troglodytes] Length = 425 Score = 44.5 bits (103), Expect = 0.071, Method: Composition-based stats. Identities = 39/231 (16%), Positives = 74/231 (32%), Gaps = 29/231 (12%) Query: 431 EQDGILDLETGQKVKP----TKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDY- 485 + + L K + V + L E +EV++ Sbjct: 128 TPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELP 187 Query: 486 -----FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540 +G+A + + + G G+GK+ L + + + I S+++Q Sbjct: 188 VKHPELFEALGIA------QPKGVLLYGPPGTGKTLLARAVAH-HTDCTFIRVSGSELVQ 240 Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR----LNYGNT 596 E + L + I +E D I +++++ +GGD R L Sbjct: 241 KFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLD 300 Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWR--RY-IVIPFDKPIANRDASFA 644 E+ + + N+ + D A R R I F P N +A Sbjct: 301 GFEATKNIKVIMATNRIDIL---DSALLRPGRIDRKIEF--PPPNEEARLD 346 >gi|114669870|ref|XP_001149504.1| PREDICTED: similar to mSUG1 protein isoform 4 [Pan troglodytes] Length = 329 Score = 44.5 bits (103), Expect = 0.071, Method: Composition-based stats. Identities = 39/231 (16%), Positives = 74/231 (32%), Gaps = 29/231 (12%) Query: 431 EQDGILDLETGQKVKP----TKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDY- 485 + + L K + V + L E +EV++ Sbjct: 32 TPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELP 91 Query: 486 -----FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540 +G+A + + + G G+GK+ L + + + I S+++Q Sbjct: 92 VKHPELFEALGIA------QPKGVLLYGPPGTGKTLLARAVAH-HTDCTFIRVSGSELVQ 144 Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR----LNYGNT 596 E + L + I +E D I +++++ +GGD R L Sbjct: 145 KFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLD 204 Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWR--RY-IVIPFDKPIANRDASFA 644 E+ + + N+ + D A R R I F P N +A Sbjct: 205 GFEATKNIKVIMATNRIDIL---DSALLRPGRIDRKIEF--PPPNEEARLD 250 >gi|13278504|gb|AAH04052.1| Psmc5 protein [Mus musculus] Length = 306 Score = 44.5 bits (103), Expect = 0.071, Method: Composition-based stats. Identities = 39/231 (16%), Positives = 74/231 (32%), Gaps = 29/231 (12%) Query: 431 EQDGILDLETGQKVKP----TKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDY- 485 + + L K + V + L E +EV++ Sbjct: 9 TPNCRVALRNDSYTLHKILPNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELP 68 Query: 486 -----FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540 +G+A + + + G G+GK+ L + + + I S+++Q Sbjct: 69 VKHPELFEALGIA------QPKGVLLYGPPGTGKTLLARAVAH-HTDCTFIRVSGSELVQ 121 Query: 541 NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR----LNYGNT 596 E + L + I +E D I +++++ +GGD R L Sbjct: 122 KFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLD 181 Query: 597 YSESPASFTPFIVPNKHLFVRNPDDAWWR--RY-IVIPFDKPIANRDASFA 644 E+ + + N+ + D A R R I F P N +A Sbjct: 182 GFEATKNIKVIMATNRIDIL---DSALLRPGRIDRKIEF--PPPNEEARLD 227 >gi|297273395|ref|XP_002800612.1| PREDICTED: 26S protease regulatory subunit 8-like isoform 4 [Macaca mulatta] Length = 416 Score = 44.5 bits (103), Expect = 0.072, Method: Composition-based stats. Identities = 43/262 (16%), Positives = 81/262 (30%), Gaps = 32/262 (12%) Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP----TKELYITKS 455 K K + G +D + + + L K + Sbjct: 91 DKKKVLVKVHPEGKFVVDVDKNIDINDV---TPNCRVALRNDSYTLHKILPNKVDPLVSL 147 Query: 456 TGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGV 509 V + L E +EV++ +G+A + + + G Sbjct: 148 MMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIA------QPKGVLLYGP 201 Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569 G+GK+ L + + + I S+++Q E + L + I +E Sbjct: 202 PGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDE 260 Query: 570 NDEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625 D I +++++ +GGD R L E+ + + N+ + D A R Sbjct: 261 IDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DSALLR 317 Query: 626 --RY-IVIPFDKPIANRDASFA 644 R I F P N +A Sbjct: 318 PGRIDRKIEF--PPPNEEARLD 337 >gi|293982|gb|AAA67907.1| helicase [Autographa californica nucleopolyhedrovirus] Length = 1221 Score = 44.5 bits (103), Expect = 0.072, Method: Composition-based stats. Identities = 46/362 (12%), Positives = 111/362 (30%), Gaps = 39/362 (10%) Query: 279 DTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDK 338 D + + L + LI + + F F + Y Sbjct: 714 DMFGNDAELSELIWM---LIFTNKTYVSTTLIRTNSEFVNQHGEFFSKEHNKIIQYLYRT 770 Query: 339 NNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEE 398 + + L FL +++DV + ++ +F+ + +++ Sbjct: 771 IHKIEYVDMLMDKFNDKRLFLTELRDDVAREPDV--QFEESDNISKFYTHHADALMILKK 828 Query: 399 NSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGT 458 + I + ++D L + I+ + + + G Sbjct: 829 YNVWWD-------KIILARSTDDLPT--WLTRFYMRII-MSKVDLKEYSYNYLKKIVEGY 878 Query: 459 PFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTL 517 + F + F + +L + + ++ I++ G GSGKS+ Sbjct: 879 LY--------FKRFTN--FNHANAI--MLMHFAASLAIPVDYGKKAIYMPGEPGSGKSSF 926 Query: 518 MNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIV-IISETNENDEINAA 576 L+ Y + +G++N S++ + NE + + + Sbjct: 927 FELLDYLV----------LMHKFDDDNHSGESNKETSDKEVSKLNSQLYTINELKQCSES 976 Query: 577 KIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI 636 K+ ++ + A++ IV NK L+V + DD R++++ + Sbjct: 977 YFKKHADSSKSDSKSRKYQGLLKYEANYKMLIVNNKPLYVDDYDDGVQDRFLIVYTNHKF 1036 Query: 637 AN 638 + Sbjct: 1037 VD 1038 >gi|262342361|gb|ACY54681.1| NS1 [Aleutian mink disease virus] Length = 641 Score = 44.5 bits (103), Expect = 0.074, Method: Composition-based stats. Identities = 25/154 (16%), Positives = 43/154 (27%), Gaps = 20/154 (12%) Query: 458 TPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTL 517 F E E + L + +E+ Y + + L + + G GG+GK+ L Sbjct: 385 VKFNEEEDDKPLLTTIKDMGLNEQ---YLKKVLCTILTKQGGKRGCLWFYGPGGTGKTLL 441 Query: 518 MNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK 577 +LI + N ++ N I+ E Sbjct: 442 ASLICKSVVNYGMVTT-------------SNPNFPWTDCGNRNIIWAEECGNFGNWVED- 487 Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPN 611 K +TGG + S + N Sbjct: 488 FKAITGGGDVKVDTKNKQPQS---IKGCVIVTSN 518 >gi|9627838|ref|NP_054125.1| helicase [Autographa californica nucleopolyhedrovirus] gi|1174931|sp|P24307|V143_NPVAC RecName: Full=ATP-dependent DNA helicase P143 gi|559164|gb|AAA66725.1| helicase [Autographa californica nucleopolyhedrovirus] Length = 1221 Score = 44.5 bits (103), Expect = 0.075, Method: Composition-based stats. Identities = 46/362 (12%), Positives = 111/362 (30%), Gaps = 39/362 (10%) Query: 279 DTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDK 338 D + + L + LI + + F F + Y Sbjct: 714 DMFGNDAELSELIWM---LIFTNKTYVSTTLIRTNSEFVNQHGEFFSKEHNKIIQYLYRT 770 Query: 339 NNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEE 398 + + L FL +++DV + ++ +F+ + +++ Sbjct: 771 IHKIEYVDMLMDKFNDKRLFLTELRDDVAREPDV--QFEESDNISKFYTHHADALMILKK 828 Query: 399 NSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGT 458 + I + ++D L + I+ + + + G Sbjct: 829 YNVWWD-------KIILARSTDDLPT--WLTRFYMRII-MSKVDLKEYSYNYLKKIVEGY 878 Query: 459 PFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTL 517 + F + F + +L + + ++ I++ G GSGKS+ Sbjct: 879 LY--------FKRFTN--FNHANAI--MLMHFAASLAIPVDYGKKAIYMPGEPGSGKSSF 926 Query: 518 MNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIV-IISETNENDEINAA 576 L+ Y + +G++N S++ + NE + + + Sbjct: 927 FELLDYLV----------LMHKFDDDNHSGESNKETSDKEVSKLNSQLYTINELKQCSES 976 Query: 577 KIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI 636 K+ ++ + A++ IV NK L+V + DD R++++ + Sbjct: 977 YFKKHADSSKSDSKSRKYQGLLKYEANYKMLIVNNKPLYVDDYDDGVQDRFLIVYTNHKF 1036 Query: 637 AN 638 + Sbjct: 1037 VD 1038 >gi|300941012|ref|ZP_07155533.1| nucleoside triphosphatase, D5 family [Escherichia coli MS 21-1] gi|300454227|gb|EFK17720.1| nucleoside triphosphatase, D5 family [Escherichia coli MS 21-1] Length = 177 Score = 44.5 bits (103), Expect = 0.076, Method: Composition-based stats. Identities = 23/170 (13%), Positives = 43/170 (25%), Gaps = 41/170 (24%) Query: 619 PDDAWWRRYIVIPFDKPIA--NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIP 676 RR ++I F + IA RD K+ + ++ P Sbjct: 1 RGGGVSRRRVIIHFPEQIAPQERDPQLKDKITR-ELAVIVRHLMQ----------KFSDP 49 Query: 677 EVCLKAKEEE---------RQGTDTYQAWIDDCCDIGENL------------WEESHSLA 715 + + + ++ D +I + L Sbjct: 50 MLARSLLQSQQNSDEALNIKRDADPTFDFIG-YLETLPQTSGMYMGNASIIPRNYRKYLY 108 Query: 716 KSYSEYREQELNYDRKRISTRTVTL----NLKQKGFIGGIKREKIEKEWK 761 +Y Y E R +S + L LK+ G + K + Sbjct: 109 HAYLAYMEANGY--RNVLSLKMFGLGLPVMLKEYGLNYEKRHTKQGIQTN 156 >gi|39939000|ref|NP_950766.1| hypothetical protein PAM_514 [Onion yellows phytoplasma OY-M] gi|39722109|dbj|BAD04599.1| conserved hypothetical protein [Onion yellows phytoplasma OY-M] Length = 596 Score = 44.5 bits (103), Expect = 0.077, Method: Composition-based stats. Identities = 39/283 (13%), Positives = 84/283 (29%), Gaps = 36/283 (12%) Query: 351 ITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLE 410 + ++++ +F L++ N K R N E K Sbjct: 155 KEKDQLQTQENLQQQIFQLNQALNYVEANQKRIEELKTQKEYRNNQTELKNFKD------ 208 Query: 411 AGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFL 470 +T + + L+ + + TK+ K + +E Sbjct: 209 --FQLFLTDQKFAFEKQKKNLTIQLNHLKENKPLPHTKKQVTFK---DVYGMETEKEELE 263 Query: 471 DLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530 DL++ + ++ ++++ + + G G+GK+ L IK G V Sbjct: 264 DLLTYFKTNQTLINFDQ-----------VRPKGYLLYGPPGTGKTFL---IKALCGEANV 309 Query: 531 INAEASDIMQNRPPEAGKANPSL------IRLMGSRIVIISETNENDEINAAKIKQMTGG 584 + R G+ + + I+ I E + N + I G Sbjct: 310 HFINLIP-AKFRQKYIGEGEKEVEKVWQEAEIHDKTIIFIDEIEGLENRNDSNI-SSGGV 367 Query: 585 DCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627 + + L+ + ++ S N + D A R+ Sbjct: 368 NVINTLLDKLDGFNSSNKKIVLMGATNNLHKI---DTALRSRF 407 >gi|24651451|ref|NP_651811.1| Rpt6R [Drosophila melanogaster] gi|7301963|gb|AAF57069.1| Rpt6R [Drosophila melanogaster] gi|21430822|gb|AAM51089.1| SD17676p [Drosophila melanogaster] gi|220959236|gb|ACL92161.1| CG2241-PA [synthetic construct] Length = 399 Score = 44.5 bits (103), Expect = 0.077, Method: Composition-based stats. Identities = 42/313 (13%), Positives = 86/313 (27%), Gaps = 48/313 (15%) Query: 368 DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSR 427 E + + N++ + E GS + +D + Sbjct: 20 QKISELQFTVNERQKNLLRLQAQRNELNLKVRLLREELQLLQEQGSYIAEVVKPMDKNKV 79 Query: 428 FLGE-QDGILDLETGQKVK------------PTKELYITKSTGTPFVEGEPSQEFLD--- 471 + +G ++ + + + + K Sbjct: 80 LVKVHPEGKYVVDVDKTINIKDVTPSSRVALRNESYTLHKILPNKVDPLVSLMLVEKVPD 139 Query: 472 --------LVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTL 517 L E +EV++ +G + + + G G+GK+ L Sbjct: 140 STYEMVGGLDKQIQEIKEVIELPVKHPELFDALG------ITQPKGVLLYGPPGTGKTLL 193 Query: 518 MNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK 577 + + I S+++Q E + L + I +E D I +A+ Sbjct: 194 ARAVAH-HTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSAR 252 Query: 578 IKQMTGGDCMT---ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR--RY-IVIP 631 ++ TG + L E+ + + N+ + D A R R I Sbjct: 253 LETGTGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDVL---DQALLRPGRIDRKIE 309 Query: 632 FDKPIANRDASFA 644 F P N +A Sbjct: 310 F--PPPNEEARLD 320 >gi|47220534|emb|CAG05560.1| unnamed protein product [Tetraodon nigroviridis] Length = 316 Score = 44.5 bits (103), Expect = 0.079, Method: Composition-based stats. Identities = 16/80 (20%), Positives = 27/80 (33%), Gaps = 7/80 (8%) Query: 696 WIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREK 755 WI + + + + Y Y + N +S +K +K + Sbjct: 59 WIRNHLEEHQETSLPKQEVYDEYKSYCD---NLGYNPLSAADFGKIMKN--VFPTMKARR 113 Query: 756 IEKEWKSKRIIKGLKLKPAF 775 + KSK GL+ K AF Sbjct: 114 LGMRGKSKYPF-GLR-KKAF 131 >gi|194744279|ref|XP_001954622.1| GF16654 [Drosophila ananassae] gi|190627659|gb|EDV43183.1| GF16654 [Drosophila ananassae] Length = 1327 Score = 44.5 bits (103), Expect = 0.079, Method: Composition-based stats. Identities = 12/84 (14%), Positives = 26/84 (30%), Gaps = 5/84 (5%) Query: 687 RQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746 R + W+ + + + Y Y E K +ST +KQ Sbjct: 311 RSEINHTINWVRSHLEHDAKVSIPKQDVYNDYIAYCE---RLSIKPLSTADFGKVMKQ-- 365 Query: 747 FIGGIKREKIEKEWKSKRIIKGLK 770 G++ ++ S+ ++ Sbjct: 366 VFPGVRPRRLGTRGNSRYCYAAMR 389 >gi|307150955|ref|YP_003886339.1| virulence-associated E family protein [Cyanothece sp. PCC 7822] gi|306981183|gb|ADN13064.1| virulence-associated E family protein [Cyanothece sp. PCC 7822] Length = 496 Score = 44.5 bits (103), Expect = 0.080, Method: Composition-based stats. Identities = 41/295 (13%), Positives = 96/295 (32%), Gaps = 37/295 (12%) Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538 +E + + V G+K + + G G GK++ G+ + N+ + Sbjct: 209 NEYLYRWLIGAVRRVFEPGSKFDNALVLYGNQGVGKTSFFE----ILGSGFFSNSMTGKL 264 Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA-AKIKQMTGGDCMTARLNYGNTY 597 ++ + L S ++ E + A IK + R+ YG Sbjct: 265 DKD----------DYMILAQSWVLEWGELDGFTSKTYHATIKHFLSKREDSYRVPYGKNL 314 Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKK 657 + P N F+ +P RR+ +IP + + +L Sbjct: 315 LKMPRRSVIVGTTNSDNFLSDPSG--NRRFWIIP----VRKQQIDL--ELLKGSVKSIWS 366 Query: 658 WFLKGVKAYISKGLDVDIPEV---CLKAKEEERQGTDTYQAWIDDCC--DIGENLWEESH 712 + + G+ ++P+ + + D ++ +I +C + + + Sbjct: 367 SAVIDYQK----GISDNLPKEFWKLQEEDNNYYEYEDPWENYIIECTKQTLQKEGEDFQG 422 Query: 713 SLAKSYSEYREQELNYDRKRISTRT-VTLNLKQKGFIGGIKREKIEKEWKSKRII 766 + + + K ++ LK+ GF +E++ K+ + R+ Sbjct: 423 INSNEFFNFLNTNGMTVSKDKKNEMRLSDILKKLGFS----KERVRKKGRQVRVY 473 >gi|268561690|ref|XP_002646506.1| Hypothetical protein CBG20339 [Caenorhabditis briggsae] gi|268561700|ref|XP_002646508.1| Hypothetical protein CBG20343 [Caenorhabditis briggsae] gi|187023416|emb|CAP37377.1| hypothetical protein CBG_20339 [Caenorhabditis briggsae AF16] gi|187023418|emb|CAP37379.1| hypothetical protein CBG_20343 [Caenorhabditis briggsae AF16] Length = 415 Score = 44.5 bits (103), Expect = 0.081, Method: Composition-based stats. Identities = 51/309 (16%), Positives = 98/309 (31%), Gaps = 31/309 (10%) Query: 348 LDK-ITASIMNFLVSMKEDVFDLSEEP-----EDNNKNSKSPRFWFNTDYRRQNVEENSK 401 K + ++ + L + + R + + + K Sbjct: 31 YWKTKLDEAEQQVREKEQTIRRLGASKNELNGKVGQLKEEINRLHEQASHVGEVCKAMDK 90 Query: 402 AKSTAQS-LEAGSIFSITSDLLDSSSRFLGEQDGI-LDLETGQKVKPTKELYITKSTGTP 459 K +S + I ++ S +D S G + + D KV P K + Sbjct: 91 KKVLVKSHPDGKYIVNVDSVSVDMSQMTAGTRVAMKADSYMIHKVLPNKVDPLVSLMMVE 150 Query: 460 FVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGVGGSG 513 V + L E +EV++ +G+A + + + G G+G Sbjct: 151 KVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALGIA------QPKGVLLYGPPGTG 204 Query: 514 KSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI 573 K+ L + + I S+++Q E + L + I +E D I Sbjct: 205 KTLLARAVAH-HTECTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSI 263 Query: 574 NAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR--RY 627 +++++ +GGD R L E+ + + N+ + D A R R Sbjct: 264 GSSRVEGSSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DSALLRPGRI 320 Query: 628 -IVIPFDKP 635 I F P Sbjct: 321 DRKIEFPAP 329 >gi|220909682|ref|YP_002484993.1| hypothetical protein Cyan7425_4322 [Cyanothece sp. PCC 7425] gi|219866293|gb|ACL46632.1| hypothetical protein Cyan7425_4322 [Cyanothece sp. PCC 7425] Length = 811 Score = 44.5 bits (103), Expect = 0.082, Method: Composition-based stats. Identities = 25/170 (14%), Positives = 43/170 (25%), Gaps = 32/170 (18%) Query: 28 KRPQRLGKWEEQLLSSE--KIDKLP----------------ACGFGFVCG-VGEQPLYAF 68 K+P + W++ + + G G + G GE L Sbjct: 40 KQPAYISGWKDGEPIVKSINWKQFQTNMPQDSMLGVWFRDRKTGIGTLAGWNGEHWLGWI 99 Query: 69 DIDSKDEKTANTFKDTFEIL-------HGTPIVRIGQKP-KILIPFRMNKEGIKKKKT-- 118 D D KD + G P R + LI + E Sbjct: 100 DFDVKDFASQEACDRAVAEWMEQYQIVKGCPRFRTPGGGYRFLIAWEKEPENFGANNGFS 159 Query: 119 --TESTQGHLDIL-GCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLL 165 + + ++L G + + K Y W + +P Sbjct: 160 LSPDGSTRSGELLTKNGGHTLLPPTIGVNGKPYYWEYWQEYPPLASSPEA 209 >gi|169634211|ref|YP_001707947.1| putative primase [Acinetobacter baumannii SDF] gi|169153003|emb|CAP02061.1| conserved hypothetical protein; putative primase [Acinetobacter baumannii] Length = 909 Score = 44.5 bits (103), Expect = 0.082, Method: Composition-based stats. Identities = 61/550 (11%), Positives = 160/550 (29%), Gaps = 51/550 (9%) Query: 160 EDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGE 219 + P + V K + ++ + + + N + + Sbjct: 205 NNYPSILLNKVAEQCKQADKPRPKIIWAFDADQAGRDGIDKNIERAKADGWDCAAALPPS 264 Query: 220 EFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGD 279 + ++ ++ + R + + R + + + F + Sbjct: 265 GWNKTDWND-------LYKQERLTESDLKNYRYFGDLHTAERPAD--KAILMFKRTKSNS 315 Query: 280 TAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGH--FLYTADTKAWYKKD 337 + F L D N+ K L ++ Y Sbjct: 316 FPFDFNNRLYWFKMDADAYNVKLREIGMEDDDNEDWLQKEKDEFDEKLIDQAIRSCYSVT 375 Query: 338 KNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVE 397 + + + +A I + + D + + + ++++++ + Sbjct: 376 EIANCKPTALYYQYSAEIDDAKYYFRID---FPKNAQPVKNTFTGGQLSAASEFKKRLLA 432 Query: 398 ENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQD----------GILDLETGQKVKPT 447 T + + T + + + + G + ++ G+ Sbjct: 433 VAPGVIYTGNGAQLDRVLRNTIENI-RRVQLINYIGYHHELQTYVLGDIAVQHGKTYHIN 491 Query: 448 KELYI------------TKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALL 495 + Y + +GE +E++ + ++ ++ T G + Sbjct: 492 ADDYFALPRQVNLKANVPFALKINKEQGEYKKEWIKDLIEAYDVRGLVT-LTAFFGSLFV 550 Query: 496 GGNKAQRFIH----IRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANP 551 + + I G G+GKST++N + G + N + + N+ E+G Sbjct: 551 QQIRKKHKSFPFLEIVGHAGTGKSTMLNFMWKLLGCE-DNNGDYEGLDPNKTSESGLIRT 609 Query: 552 SLIRLMGSRIVIISETNEND------EINAAKIKQMTGGDCMTARLNYGNTYSESPASFT 605 ++ +++I + + N +K + G + AR F Sbjct: 610 FR-QVSNLPVLLIESDRSGENQPYTRQFNWDMLKTLYDGGSLGARGMKTGGNETYDPPFM 668 Query: 606 PFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKA 665 ++ +++ V +A R++ I F+K + A K KY +E +F+ Sbjct: 669 GSLIVSQNAEVNG-SEAIKGRFLHIGFEKKHLTAQSLAASKRLQKYKIEDVSYFILSCLE 727 Query: 666 YISKGLDVDI 675 K L+ Sbjct: 728 KEEKILETYE 737 >gi|88604075|ref|YP_504253.1| hypothetical protein Mhun_2842 [Methanospirillum hungatei JF-1] gi|88189537|gb|ABD42534.1| hypothetical protein Mhun_2842 [Methanospirillum hungatei JF-1] Length = 198 Score = 44.1 bits (102), Expect = 0.083, Method: Composition-based stats. Identities = 23/140 (16%), Positives = 42/140 (30%), Gaps = 16/140 (11%) Query: 19 KLIPLRLGDKRPQRLGKWEEQLLSSE----KIDKLPACGFGFVCGVGEQPLYAFDIDSKD 74 + I + G K P + S + + +G + + D+D KD Sbjct: 26 RFILVASGSKNPIEKEWSSKNNYSIDDPVLQKHISSGGNYGVI---PSSTIAVLDVDEKD 82 Query: 75 EKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKK---KTTESTQGHL-DILG 130 D + T IV+ G I ++ E KK + H+ +I Sbjct: 83 IFDRLEILDYLKE---TFIVKTGSDDGYHIYLKIKDECPAKKIPLYDPKDNSKHIGEIFF 139 Query: 131 CGQ--YFVAYNIHPKTKKEY 148 + V + +Y Sbjct: 140 SDCPAFVVGPGCTHPSGNKY 159 >gi|294664100|ref|ZP_06729496.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292606131|gb|EFF49386.1| conserved hypothetical protein [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 583 Score = 44.1 bits (102), Expect = 0.083, Method: Composition-based stats. Identities = 33/175 (18%), Positives = 62/175 (35%), Gaps = 12/175 (6%) Query: 468 EFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIH----IRGVGGSGKSTLMNLIKY 523 ++L + F + ++ T G +A G G+GK+TL+ + Sbjct: 208 DWLPWLWQCFGTHGMVA-MTFWFGSLFAEQIRAAHKSFPFLEATGEAGAGKTTLLTFLWK 266 Query: 524 AFG-NQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMT 582 G + Y A R G+ + + L+ + + + + ++K Sbjct: 267 LLGRSDYEGFDPAKSSKAGRARAMGQVSGMPVVLLEADRSDVDKAHA-RTFEWDELKDFF 325 Query: 583 GGDCMTAR--LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP 635 GG + R N GN E P T I N + + +A R + + F +P Sbjct: 326 GGGTLATRGVRNGGNETYEPPFRGTIVISQNAAV---DASEAILTRIVKLHFKRP 377 >gi|301096539|ref|XP_002897366.1| conserved hypothetical protein [Phytophthora infestans T30-4] gi|262107057|gb|EEY65109.1| conserved hypothetical protein [Phytophthora infestans T30-4] Length = 235 Score = 44.1 bits (102), Expect = 0.083, Method: Composition-based stats. Identities = 25/181 (13%), Positives = 55/181 (30%), Gaps = 23/181 (12%) Query: 560 RIVIISETNENDEINAAKIKQMTGGDCMTARLN------YGNTYSESPASFTP-FIVPNK 612 + + E + KQ+ D M + ++ S P I NK Sbjct: 1 MVFLFGEDGSGKSLLMNLSKQILCCDDMNNHAKTLSKAAFLSSISSFHDWDIPTIINSNK 60 Query: 613 HLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWF----LKGVKAYIS 668 ++ + + +++ + +++ K LK Y + Sbjct: 61 LPNYKDESG------------EVVQSKNTNLENEIKDKEFGVFLHRCRPTFLKFCSRYKN 108 Query: 669 KGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNY 728 KG+ P ++++ R T+ +I D C + L K+ Y ++ Sbjct: 109 KGVGTFCPVSFIESRNLLRMATNNTYQFIFDRCKYEGGTFTSVPQLNKAMKAYINEKYEM 168 Query: 729 D 729 Sbjct: 169 K 169 >gi|297565775|ref|YP_003684747.1| Bifunctional DNA primase/polymerase [Meiothermus silvanus DSM 9946] gi|296850224|gb|ADH63239.1| Bifunctional DNA primase/polymerase [Meiothermus silvanus DSM 9946] Length = 289 Score = 44.1 bits (102), Expect = 0.086, Method: Composition-based stats. Identities = 25/172 (14%), Positives = 51/172 (29%), Gaps = 18/172 (10%) Query: 10 AKQAIHNGFKLIPLRLGDKRPQ---RLGKWEEQLLSSEKIDKL----PACGFGFVCGVGE 62 A + G+ ++P+ KRP + I P V V Sbjct: 8 ALEYASMGYPVLPVESESKRPIAYLAPHGLHSASTNPRIISAWYRLEPTAN---VAVVPP 64 Query: 63 QPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTEST 122 + D+DS+ + +F L P + + G+ + + + Sbjct: 65 AGVVILDLDSRASW--ESLTRSFPALLEAPHSHTPRGGT--HCYLRVPSGVALRACSTGS 120 Query: 123 QGHLDILGCG-QYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYL 173 ++ G Y + + Y+W P + + PL+ + L Sbjct: 121 LPAFEVKRSGLAYVLEAPSRTERG-AYSWAVPL--RRPSELPLMPYAILARL 169 >gi|198453554|ref|XP_001359237.2| GA21990 [Drosophila pseudoobscura pseudoobscura] gi|198132408|gb|EAL28382.2| GA21990 [Drosophila pseudoobscura pseudoobscura] Length = 1344 Score = 44.1 bits (102), Expect = 0.091, Method: Composition-based stats. Identities = 12/84 (14%), Positives = 26/84 (30%), Gaps = 5/84 (5%) Query: 687 RQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746 R + W+ + + + Y Y E K +ST +KQ Sbjct: 299 RSEINHTINWVRSHLEHDAQVSIPKQDVYNDYIAYCE---RLSIKPLSTADFGKVMKQ-- 353 Query: 747 FIGGIKREKIEKEWKSKRIIKGLK 770 G++ ++ S+ ++ Sbjct: 354 VFPGVRPRRLGTRGNSRYCYAAMR 377 >gi|195568743|ref|XP_002102373.1| GD19544 [Drosophila simulans] gi|194198300|gb|EDX11876.1| GD19544 [Drosophila simulans] Length = 1272 Score = 44.1 bits (102), Expect = 0.091, Method: Composition-based stats. Identities = 12/84 (14%), Positives = 26/84 (30%), Gaps = 5/84 (5%) Query: 687 RQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746 R + W+ + + + Y Y E K +ST +KQ Sbjct: 304 RSEINHTINWVRSHLEHDAQVSIPKQDVYNDYIAYCE---RLSIKPLSTADFGKVMKQ-- 358 Query: 747 FIGGIKREKIEKEWKSKRIIKGLK 770 G++ ++ S+ ++ Sbjct: 359 VFPGVRPRRLGTRGNSRYCYAAMR 382 >gi|195502302|ref|XP_002098163.1| GE24099 [Drosophila yakuba] gi|194184264|gb|EDW97875.1| GE24099 [Drosophila yakuba] Length = 1281 Score = 44.1 bits (102), Expect = 0.091, Method: Composition-based stats. Identities = 12/84 (14%), Positives = 26/84 (30%), Gaps = 5/84 (5%) Query: 687 RQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746 R + W+ + + + Y Y E K +ST +KQ Sbjct: 305 RSEINHTINWVRSHLEHDAQVSIPKQDVYNDYIAYCE---RLSIKPLSTADFGKVMKQ-- 359 Query: 747 FIGGIKREKIEKEWKSKRIIKGLK 770 G++ ++ S+ ++ Sbjct: 360 VFPGVRPRRLGTRGNSRYCYAAMR 383 >gi|195451141|ref|XP_002072785.1| GK13786 [Drosophila willistoni] gi|194168870|gb|EDW83771.1| GK13786 [Drosophila willistoni] Length = 1388 Score = 44.1 bits (102), Expect = 0.091, Method: Composition-based stats. Identities = 12/84 (14%), Positives = 26/84 (30%), Gaps = 5/84 (5%) Query: 687 RQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746 R + W+ + + + Y Y E K +ST +KQ Sbjct: 318 RSEINHTINWVRSHLEHDAQVSIPKQDVYNDYIAYCE---RLSIKPLSTADFGKVMKQ-- 372 Query: 747 FIGGIKREKIEKEWKSKRIIKGLK 770 G++ ++ S+ ++ Sbjct: 373 VFPGVRPRRLGTRGNSRYCYAAMR 396 >gi|195392154|ref|XP_002054724.1| GJ22650 [Drosophila virilis] gi|194152810|gb|EDW68244.1| GJ22650 [Drosophila virilis] Length = 1344 Score = 44.1 bits (102), Expect = 0.091, Method: Composition-based stats. Identities = 12/84 (14%), Positives = 26/84 (30%), Gaps = 5/84 (5%) Query: 687 RQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746 R + W+ + + + Y Y E K +ST +KQ Sbjct: 311 RSEINHTINWVRSHLEHDAQVSIPKQDVYNDYIAYCE---RLSIKPLSTADFGKVMKQ-- 365 Query: 747 FIGGIKREKIEKEWKSKRIIKGLK 770 G++ ++ S+ ++ Sbjct: 366 VFPGVRPRRLGTRGNSRYCYAAMR 389 >gi|195343983|ref|XP_002038570.1| GM10553 [Drosophila sechellia] gi|194133591|gb|EDW55107.1| GM10553 [Drosophila sechellia] Length = 1280 Score = 44.1 bits (102), Expect = 0.091, Method: Composition-based stats. Identities = 12/84 (14%), Positives = 26/84 (30%), Gaps = 5/84 (5%) Query: 687 RQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746 R + W+ + + + Y Y E K +ST +KQ Sbjct: 304 RSEINHTINWVRSHLEHDAQVSIPKQDVYNDYIAYCE---RLSIKPLSTADFGKVMKQ-- 358 Query: 747 FIGGIKREKIEKEWKSKRIIKGLK 770 G++ ++ S+ ++ Sbjct: 359 VFPGVRPRRLGTRGNSRYCYAAMR 382 >gi|195152157|ref|XP_002017003.1| GL22063 [Drosophila persimilis] gi|194112060|gb|EDW34103.1| GL22063 [Drosophila persimilis] Length = 1380 Score = 44.1 bits (102), Expect = 0.091, Method: Composition-based stats. Identities = 12/84 (14%), Positives = 26/84 (30%), Gaps = 5/84 (5%) Query: 687 RQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746 R + W+ + + + Y Y E K +ST +KQ Sbjct: 299 RSEINHTINWVRSHLEHDAQVSIPKQDVYNDYIAYCE---RLSIKPLSTADFGKVMKQ-- 353 Query: 747 FIGGIKREKIEKEWKSKRIIKGLK 770 G++ ++ S+ ++ Sbjct: 354 VFPGVRPRRLGTRGNSRYCYAAMR 377 >gi|195109963|ref|XP_001999551.1| GI24583 [Drosophila mojavensis] gi|193916145|gb|EDW15012.1| GI24583 [Drosophila mojavensis] Length = 1378 Score = 44.1 bits (102), Expect = 0.091, Method: Composition-based stats. Identities = 12/84 (14%), Positives = 26/84 (30%), Gaps = 5/84 (5%) Query: 687 RQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746 R + W+ + + + Y Y E K +ST +KQ Sbjct: 310 RSEINHTINWVRSHLEHDAQVSIPKQDVYNDYIAYCE---RLSIKPLSTADFGKVMKQ-- 364 Query: 747 FIGGIKREKIEKEWKSKRIIKGLK 770 G++ ++ S+ ++ Sbjct: 365 VFPGVRPRRLGTRGNSRYCYAAMR 388 >gi|194899061|ref|XP_001979081.1| GG10435 [Drosophila erecta] gi|190650784|gb|EDV48039.1| GG10435 [Drosophila erecta] Length = 1278 Score = 44.1 bits (102), Expect = 0.091, Method: Composition-based stats. Identities = 12/84 (14%), Positives = 26/84 (30%), Gaps = 5/84 (5%) Query: 687 RQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746 R + W+ + + + Y Y E K +ST +KQ Sbjct: 302 RSEINHTINWVRSHLEHDAQVSIPKQDVYNDYIAYCE---RLSIKPLSTADFGKVMKQ-- 356 Query: 747 FIGGIKREKIEKEWKSKRIIKGLK 770 G++ ++ S+ ++ Sbjct: 357 VFPGVRPRRLGTRGNSRYCYAAMR 380 >gi|24644617|ref|NP_649656.1| CG9727 [Drosophila melanogaster] gi|10727126|gb|AAF54121.2| CG9727 [Drosophila melanogaster] gi|51092155|gb|AAT94491.1| LD40317p [Drosophila melanogaster] gi|220943436|gb|ACL84261.1| CG9727-PA [synthetic construct] Length = 1280 Score = 44.1 bits (102), Expect = 0.091, Method: Composition-based stats. Identities = 12/84 (14%), Positives = 26/84 (30%), Gaps = 5/84 (5%) Query: 687 RQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746 R + W+ + + + Y Y E K +ST +KQ Sbjct: 304 RSEINHTINWVRSHLEHDAQVSIPKQDVYNDYIAYCE---RLSIKPLSTADFGKVMKQ-- 358 Query: 747 FIGGIKREKIEKEWKSKRIIKGLK 770 G++ ++ S+ ++ Sbjct: 359 VFPGVRPRRLGTRGNSRYCYAAMR 382 >gi|307330207|ref|ZP_07609355.1| Bifunctional DNA primase/polymerase [Streptomyces violaceusniger Tu 4113] gi|306884113|gb|EFN15151.1| Bifunctional DNA primase/polymerase [Streptomyces violaceusniger Tu 4113] Length = 342 Score = 44.1 bits (102), Expect = 0.092, Method: Composition-based stats. Identities = 27/186 (14%), Positives = 38/186 (20%), Gaps = 67/186 (36%) Query: 17 GFKLIPLRLGDKRPQRLG--------------------KWEEQLLSSEKIDKLPAC---- 52 GF++IPL K P + E I L A Sbjct: 20 GFRVIPLTR-AKLPAVRSPHHHDPAPLPCRGECGRLGHGVHDASADPEAIRALFAAAPWA 78 Query: 53 -GFGFVCGVGEQPLYAFDIDSKD------------------------------------- 74 G+G CG L D+D KD Sbjct: 79 TGYGIACGRAPYHLIGLDLDLKDGRPGRPRGPGGAGATDGRARTRKPGASGKDGTDSTDG 138 Query: 75 --EKTANTFKDTFEILHGTPIVRIG--QKPKILIPFRMNKEGIKKKKTTESTQGHLDILG 130 + + + G+ + +DI G Sbjct: 139 LTADGLAALARLAREHAFAIPLTVTVLTPSGGRHLWLCGPPGLAVPNSAGRLAPGIDIRG 198 Query: 131 CGQYFV 136 G Y V Sbjct: 199 LGGYLV 204 >gi|162606568|ref|XP_001713314.1| 26S protease regulatory SU 7 [Guillardia theta] gi|12580780|emb|CAC27098.1| 26S protease regulatory SU 7 [Guillardia theta] Length = 394 Score = 44.1 bits (102), Expect = 0.093, Method: Composition-based stats. Identities = 43/302 (14%), Positives = 94/302 (31%), Gaps = 22/302 (7%) Query: 345 SLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKS 404 S +++ + SI F K ++L ++ + ++ + + N Sbjct: 17 SESIENLFESIYEFSNYKKPQEWNLFQDQIKTQNENALQVAQCTKIFKNKKDQVNCI--- 73 Query: 405 TAQSLEAGSIFSITSDLLDSS---SRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFV 461 + +I L + +G ++ +K + + Sbjct: 74 VYVKHSGKFVVNIGEKLSPTDIEEGMRVGIDRSKYQIQITLPLKIDPNVTMM---TVEEK 130 Query: 462 EGEPSQEFLDLVSGYFESEEVMDY-FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNL 520 +E + E +E+++Y +L+G + + G G+GK+ + Sbjct: 131 PEITYKEIGGCKNQILEIKEIVEYPLLYPRRFSLMG-IDPPKGALLYGPPGTGKTLVARA 189 Query: 521 IKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQ 580 + N + S+++Q E + L L ++ I +E D I + Sbjct: 190 VANKT-NASFVKINCSELVQKYIGEGARLVRELFNLSKTKFACIMFFDELDAIGGTRFSG 248 Query: 581 MTGGDCMTARLN----YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR--RY-IVIPFD 633 +GG+ R E + + N+ + D A R R I F Sbjct: 249 ASGGENEVQRTMLEIVNQLDGFEKRGNTKVLMATNRPDTI---DPALLRPGRLDRKIEFS 305 Query: 634 KP 635 P Sbjct: 306 LP 307 >gi|114567433|ref|YP_754587.1| glycosylase-like protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114338368|gb|ABI69216.1| glycosylase-like protein [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 1178 Score = 44.1 bits (102), Expect = 0.094, Method: Composition-based stats. Identities = 21/183 (11%), Positives = 49/183 (26%), Gaps = 10/183 (5%) Query: 109 NKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEE 168 + +K+ + + + +Y + K Y + + L + Sbjct: 861 PSKYLKRYEGNPILEPIEEHDWESKYVLNPGALRIKDKVYLFYRAVGSDGISRIGLAISD 920 Query: 169 DVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREI-------TAFLSCFGEEF 221 + L + + I P ++K +R A S E+F Sbjct: 921 GYKVLERLPRPIFSPSTAEEKRGCEDPRLIIIEDRIIMLYTAYDGNIAQIAAASIKVEDF 980 Query: 222 YNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTA 281 G ++ W +A + + + + + Y W T+ E Sbjct: 981 LAGKYENWKRDGLAFKNIWDKDAILFA--EKINGKYVIYHRIE-PSIWATYMKEISFPLK 1037 Query: 282 KKR 284 + Sbjct: 1038 ENH 1040 >gi|30387319|ref|NP_848398.1| helicase [Choristoneura fumiferana MNPV] gi|7108525|gb|AAF36456.1|AF127530_1 P143 [Choristoneura fumiferana MNPV] gi|30270053|gb|AAP29869.1| helicase [Choristoneura fumiferana MNPV] Length = 1228 Score = 44.1 bits (102), Expect = 0.095, Method: Composition-based stats. Identities = 27/153 (17%), Positives = 59/153 (38%), Gaps = 10/153 (6%) Query: 485 YFTRCVGMALLGGNKA-QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP 543 Y G +L ++ +++ GV SGKST L+ + + D + Sbjct: 899 YMLMHFGGSLSAPTDYGRKAVYLPGVPLSGKSTFFALL------DFWVLMHKFDGETHTG 952 Query: 544 PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPAS 603 E+ + + + + S++ NE + + + K+ ++ + A+ Sbjct: 953 DESKETSDKEVSKLNSQL---YTINELKKCSESFFKKHADSSKSDSKSRKYQGLLKYEAN 1009 Query: 604 FTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI 636 + IV N L+V + DD R++++ D Sbjct: 1010 YKMLIVNNNPLYVDDFDDGVLNRFLIVYTDHKF 1042 >gi|23577821|ref|NP_703085.1| DNA helicase [Rachiplusia ou MNPV] gi|23476466|gb|AAN28013.1| DNA helicase [Rachiplusia ou MNPV] Length = 1221 Score = 44.1 bits (102), Expect = 0.099, Method: Composition-based stats. Identities = 26/155 (16%), Positives = 59/155 (38%), Gaps = 12/155 (7%) Query: 486 FTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544 +L + + ++ I++ G GSGKS+ L+ Y + Sbjct: 894 MLMHFAASLAIPVDYGKKAIYMPGEPGSGKSSFFELLDYLV----------LMHKFDDDN 943 Query: 545 EAGKANPSLIRLMGSRIV-IISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPAS 603 +G++N S++ + NE + + + K+ ++ + A+ Sbjct: 944 HSGESNKETSDKEVSKLNSQLYTINELKQCSESYFKKHADSSKSDSKSRKYQGLLKYEAN 1003 Query: 604 FTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN 638 + IV NK L+V + DD R++++ + + Sbjct: 1004 YKMLIVNNKPLYVDDYDDGVQDRFLIVYTNHKFVD 1038 >gi|325955368|ref|YP_004239028.1| ATPase AAA [Weeksella virosa DSM 16922] gi|323437986|gb|ADX68450.1| AAA ATPase central domain protein [Weeksella virosa DSM 16922] Length = 238 Score = 44.1 bits (102), Expect = 0.10, Method: Composition-based stats. Identities = 32/182 (17%), Positives = 60/182 (32%), Gaps = 27/182 (14%) Query: 473 VSGYFESEEVMDYFTRCV---GM---ALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFG 526 + F EE + R V + G + I + G G GK+ I A G Sbjct: 16 LDDVFIEEEYREKIQRFVKEHSYREKLIELGLEVDHKIMLYGASGCGKTMTAKAIGNALG 75 Query: 527 NQ-------YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIK 579 + ++ A + QN KA L ++ ++ D+ + ++K Sbjct: 76 KKVLILNLSNIVCARIGETSQNLKQIFDKAKREKAILFLDEFDLLGKSRTYDDQDVGEMK 135 Query: 580 QMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIV-IPFDKPIAN 638 ++ L + N + D A WRR+ + IP+ + + Sbjct: 136 RLVNVIIQQIDLLSSD--------VILICATNHAEMI---DTALWRRFQLRIPY--QLPD 182 Query: 639 RD 640 R+ Sbjct: 183 RE 184 >gi|29567157|ref|NP_818719.1| helicase [Adoxophyes honmai NPV] gi|29467933|dbj|BAC67323.1| helicase [Adoxophyes honmai NPV] Length = 1213 Score = 44.1 bits (102), Expect = 0.10, Method: Composition-based stats. Identities = 27/157 (17%), Positives = 50/157 (31%), Gaps = 15/157 (9%) Query: 486 FTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544 +L + + + I++ G GSGKST L++ + + I Sbjct: 898 VLSYFAASLAIPSDYDKFCIYLNGTPGSGKSTFYELLETFLVVHKHDSDQYKLIKDQTND 957 Query: 545 EAGKANPSLIRLMGSRIVIISETNENDEINAAKIK--QMTGGDCMTARLNYGNTYSESPA 602 + I + NE N + K + R +G+ E Sbjct: 958 IE----------VDKLISQLYVINEMKVCNDSFFKTNSDSTKSNSVCRKYHGSQKYE--G 1005 Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR 639 ++ I+ NK L + + D R+ +I D Sbjct: 1006 NYKMMIINNKPLHIIDYDKGVRNRFGIIYTDHKFEED 1042 >gi|310657616|ref|YP_003935337.1| phage DNA-polymerase or DNA-primase [Clostridium sticklandii DSM 519] gi|308824394|emb|CBH20432.1| putative phage DNA-polymerase or DNA-primase [Clostridium sticklandii] Length = 318 Score = 44.1 bits (102), Expect = 0.10, Method: Composition-based stats. Identities = 29/289 (10%), Positives = 72/289 (24%), Gaps = 31/289 (10%) Query: 16 NGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDS--- 72 + + P+ K W + + + G FV P D+D+ Sbjct: 39 SKIPISPVTFKAKGWNERKSWIDFDNALISLKNSNCDGVAFVL-TNHDPFICIDLDNCIT 97 Query: 73 KDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCG 132 + +N + L + I + F + K + ++I Sbjct: 98 YENTFSNKLAEECVKLFENTYMEISHSGSGIHIFLEGEIP----KNINNQTKGIEIYKEN 153 Query: 133 QYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSII 192 ++ +T + ++ +I + +++ Sbjct: 154 HCISMTG------------------EISNTLIYPSRNIINRQSDLDKIYKKMSLNERYKA 195 Query: 193 PSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARR 252 S + + + + + + C + + + + Sbjct: 196 KSNSKSITITEEVPDADSIIEIMCKYNNTAKELFEGALVSGDWSKDDFH-----LLLLLN 250 Query: 253 WSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKG 301 G+ Y E+ K + EE + S L K + G Sbjct: 251 SYTHGNEYLMEDIFLKSNLSRAEEKSKRTDRESYLKYLRKSIKKAVEIG 299 >gi|254438995|ref|ZP_05052489.1| hypothetical protein OA307_3865 [Octadecabacter antarcticus 307] gi|198254441|gb|EDY78755.1| hypothetical protein OA307_3865 [Octadecabacter antarcticus 307] Length = 623 Score = 44.1 bits (102), Expect = 0.10, Method: Composition-based stats. Identities = 30/230 (13%), Positives = 67/230 (29%), Gaps = 16/230 (6%) Query: 423 DSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGE-------PSQEFLDLVSG 475 D + ++ + P + + L + Sbjct: 169 DEGKAIAHCGNHLVQPQGRSLAPSEHRGKCIMIGAAPITPPDISLIDPEEVEFLLSELKA 228 Query: 476 YFE---SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532 + + +F +L G + +++ G GSGKS L+ L+ G Sbjct: 229 LWGWKRDVDADIFFGWVAAASLGGFPAWRSHLYVYGSRGSGKSKLIELVAGLLGEFGGNV 288 Query: 533 AEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTA-RL 591 + R +A P LI + + ++ A ++M+GG+ R Sbjct: 289 LNDATEAGIRQSRNNQARPILIDEFEPDQGTRNGSKQDKMF--ALFRRMSGGEGGRVSRG 346 Query: 592 NYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDA 641 ++ ++ H+ + D + R+++I D Sbjct: 347 GADHSAVSFRTLGAAYVTSINHIQLEPQDRS---RFVMIDLGHLPTTSDP 393 >gi|114680148|ref|YP_758561.1| DNA helicase [Plutella xylostella multiple nucleopolyhedrovirus] gi|91982212|gb|ABE68480.1| DNA helicase [Plutella xylostella multiple nucleopolyhedrovirus] Length = 1221 Score = 43.7 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 26/155 (16%), Positives = 59/155 (38%), Gaps = 12/155 (7%) Query: 486 FTRCVGMAL-LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544 +L + + ++ I++ G GSGKS+ L+ Y + Sbjct: 894 MLMHFAASLAIPVDYGKKAIYMPGEPGSGKSSFFELLDYLV----------LMHKFDDDN 943 Query: 545 EAGKANPSLIRLMGSRIV-IISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPAS 603 +G++N S++ + NE + + + K+ ++ + A+ Sbjct: 944 HSGESNKETSDKEVSKLNSQLYTINELKQCSESYFKKHADSSKSDSKSRKYQGLLKYEAN 1003 Query: 604 FTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIAN 638 + IV NK L+V + DD R++++ + + Sbjct: 1004 YKMLIVNNKPLYVDDYDDGVQDRFLIVYTNHKFVD 1038 >gi|168804177|ref|YP_001686993.1| hypothetical protein SGHV045 [Glossina pallidipes salivary gland hypertrophy virus] gi|146164249|gb|ABQ08818.1| hypothetical protein SGHV045 [Glossina pallidipes salivary gland hypertrophy virus] Length = 1728 Score = 43.7 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 19/141 (13%), Positives = 39/141 (27%), Gaps = 13/141 (9%) Query: 496 GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIR 555 N+ + +GKS M+ + + A+ L Sbjct: 1443 PINQNRIAGLFLNRTSTGKSKYMDQMLKVVFLTNTSKTITA------AEMDNDADRQLSN 1496 Query: 556 LMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLF 615 L + ++++ +E + K K + ++ R Y + N Sbjct: 1497 LANTNLLLV--VDEVTNLGT-KFKLLCNNTTLSIRRLYEPDTITLQIHSHLVLTTNNDP- 1552 Query: 616 VRNPDDAWWRRYIVIPFDKPI 636 D A R + FD+ Sbjct: 1553 -SCQDIAVVARLRI--FDRKF 1570 >gi|195038619|ref|XP_001990754.1| GH18082 [Drosophila grimshawi] gi|193894950|gb|EDV93816.1| GH18082 [Drosophila grimshawi] Length = 1387 Score = 43.7 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 12/84 (14%), Positives = 27/84 (32%), Gaps = 5/84 (5%) Query: 687 RQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746 R + W+ + + + Y Y E + K +ST +KQ Sbjct: 304 RSEINHTINWVRSHLEHDAQVSIPKQDVYNDYIVYCE---RLNIKPLSTADFGKVMKQ-- 358 Query: 747 FIGGIKREKIEKEWKSKRIIKGLK 770 G++ ++ S+ ++ Sbjct: 359 VFPGVRPRRLGTRGNSRYCYAAMR 382 >gi|156151672|gb|ABU54128.1| early protein E1 [Human papillomavirus type 53] gi|156151680|gb|ABU54135.1| early protein E1 [Human papillomavirus type 53] gi|156151688|gb|ABU54142.1| early protein E1 [Human papillomavirus type 53] Length = 636 Score = 43.7 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 34/253 (13%), Positives = 70/253 (27%), Gaps = 44/253 (17%) Query: 461 VEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNL 520 +G + + + ++ E + + + L G K + I G +GKS Sbjct: 421 DDGGDWKPIVQFLR--YQGVEFISFL-SYFKLFLQGTPKHN-CLVIYGPPNTGKSCFAMS 476 Query: 521 IKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQ 580 + F + + + N L L + +E ++ Sbjct: 477 LINFF----HGSVISYVNSHSHFWLQPLDNTKLGMLDDATEACWRYIDEY-------LRN 525 Query: 581 MTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR----RYIVIPFDKPI 636 + G+ ++ + P ++ + DA R R V+ F P Sbjct: 526 LLDGNPVSLDRKHKQL---VQIKCPPVLITTN---INPMQDAKLRYLHSRIHVLQFLNPF 579 Query: 637 A-NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQA 695 + + + +L W + + LD D + D Sbjct: 580 PIDVNGNPVYQLNNA------NWKCFFERTWSRLDLDNDEDKE---------NDGDAIAT 624 Query: 696 WIDDCCDIGENLW 708 + C GEN Sbjct: 625 F---RCVPGENSR 634 >gi|123235258|ref|XP_001286732.1| hypothetical protein [Trichomonas vaginalis G3] gi|121852826|gb|EAX73802.1| hypothetical protein TVAG_058600 [Trichomonas vaginalis G3] Length = 173 Score = 43.7 bits (101), Expect = 0.11, Method: Composition-based stats. Identities = 27/174 (15%), Positives = 49/174 (28%), Gaps = 23/174 (13%) Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637 +K + Y + + + N D RRY+V+ Sbjct: 2 LKSLITDKVGVVERKYKDQRVCENVANFIMVSNNTVPMKLESSD---RRYVVVR-TSDSH 57 Query: 638 NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQA- 695 +D + L T + + IP + ++ + + Sbjct: 58 MQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIPY--TEERQTLLEANKSVYEL 115 Query: 696 WID----DCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK 745 +ID +C D SL Y +Y ++ Y S RT N+K Sbjct: 116 FIDETNFECLDE--------RSLYDEYKQYCQE---YGYMTASKRTFLANVKSL 158 >gi|289656454|gb|ADD14047.1| E1 protein [Human papillomavirus type 114] Length = 625 Score = 43.7 bits (101), Expect = 0.12, Method: Composition-based stats. Identities = 19/152 (12%), Positives = 42/152 (27%), Gaps = 15/152 (9%) Query: 486 FTRCVGMA--LLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP 543 F R +G L G + + G +GKS + G + + Sbjct: 427 FIRFMGALKQFLKGTPKKSCLVFYGPSDTGKSLFCMSLLNFLG----GAVISFVNSPSHF 482 Query: 544 PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPAS 603 + A+ + L + + ++ + G+ ++ + N Sbjct: 483 WLSPLADTKIGLLDDATYQCWVYIDTY-------LRSVLDGNTISIDRKHKNLTQLKCPP 535 Query: 604 FTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP 635 I N + + R ++ PF Sbjct: 536 --LLITTNVNPEADDTFKYLKSRMVMFPFPNK 565 >gi|23334599|ref|NP_694824.1| hypothetical protein [Junonia coenia densovirus] gi|6136266|sp|Q90054|VNCS_JDNVP RecName: Full=Non-capsid protein NS-1; AltName: Full=NCVP1; AltName: Full=Non-structural protein NS1 gi|257677|gb|AAB23699.1| orf2 [Junonia coenia densovirus] Length = 545 Score = 43.7 bits (101), Expect = 0.12, Method: Composition-based stats. Identities = 53/512 (10%), Positives = 140/512 (27%), Gaps = 34/512 (6%) Query: 144 TKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVP-----LVKDKKSIIPSKTWT 198 T ++ W+ + S+E+ +Y+ + +++ + K + Sbjct: 40 TSRKREWSHGGRGT-MASIAKESQENFQYMAEELEKMGSEFFGYVTGQSIKPSSAYISDV 98 Query: 199 NNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGS 258 + L +G NG + +H S + W Q Sbjct: 99 IILRDIQLRDQCLDVLREYGRSRRNG-LFGFSEEGDHIHVIHDCSYTNRSCRDIWISQVK 157 Query: 259 TYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSI 318 + K F +E + + + I + + ++ Sbjct: 158 PFGSVQKTGKPVKFIWEFKRTDWYDVFIYFFVRKRGERAIYVRGESGKIPSNDECVRWTR 217 Query: 319 YKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNK 378 K + ++ Y + + + S + + + + ++ + + K Sbjct: 218 EFKEREMVSSSDCTDYYECEQQEHKIS----RRSDAGSSNGRLYEKKAYSAGKFAYIRKK 273 Query: 379 NSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDL 438 R ++ + + + D + ++ I +L Sbjct: 274 TKALLRKYYVSPVSAICDVPEFRDDDLLCDPKNRDYIQAACDDFGKDLNAMSLRE-IYNL 332 Query: 439 ---ETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYF--ESEEVMDYFTRCVGMA 493 + + Y + + E S + + + + E+++ F + Sbjct: 333 LTEDYNFTDEQELNPYALFISSMKYDNLENSLNIIIELLKFQCNDDEDLIVEFLTNLVNV 392 Query: 494 LLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL 553 L I +GK+ ++I + + +A + N Sbjct: 393 LDRRIPKLNAFLIISPPSAGKNFFFDMIFGLL------------LSYGQLGQANRHNLFA 440 Query: 554 IRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG-NTYSESPASFTPFIVPNK 612 + ++ V++ + IK M GGD T R+ + + + + N Sbjct: 441 FQEAPNKRVLLWNEPNYESSLTDTIKMMFGGDPYTVRVKNRMDAHVKRTP--VIILTNNT 498 Query: 613 HLFVRNPDDAWWRRYIVIPFDKPIANRDASFA 644 F+ A+ R I ++ +D Sbjct: 499 VPFMYET--AFSDRIIQYKWNAAPFLKDYELK 528 >gi|15741130|gb|AAL06737.1|AF349909_3 putative replication protein E1 [Human papillomavirus type 86] Length = 652 Score = 43.7 bits (101), Expect = 0.12, Method: Composition-based stats. Identities = 26/200 (13%), Positives = 64/200 (32%), Gaps = 24/200 (12%) Query: 465 PSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524 + + L+ F+ E + + + L G K + G +GKS + Sbjct: 437 DWRHIVKLLR--FQGIEFISFM-EALKQFLKGTPKKS-CLVFYGPSDTGKSLFCMSLLRY 492 Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEIN-AAKIKQMTG 583 G + ++ ++ L L+ ++I ++ + + + ++ + Sbjct: 493 LGGAVISFVNST------------SHFWLSPLVDAKIGLLDDATQQCWVYIDTYLRTVLD 540 Query: 584 GDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR-RYIVIPFDKPIA-NRDA 641 G+ M+ + N P ++ + + R R +V PF + + + Sbjct: 541 GNTMSIDRKHKNLQ---QLKCPPLMITTNVNIAADDTFKYLRSRMVVFPFLQKCPLDSNG 597 Query: 642 SFAQKLETKYTLEAK--KWF 659 KL + W Sbjct: 598 EPVYKLNNENWKSFFQRSWA 617 >gi|291010736|gb|ADD71724.1| DNA helicase [Leuconostoc phage 1-A4] Length = 450 Score = 43.7 bits (101), Expect = 0.13, Method: Composition-based stats. Identities = 31/157 (19%), Positives = 55/157 (35%), Gaps = 21/157 (13%) Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIH-----IRGVGGSGKSTLMNLIKYAFGNQYVINA 533 E+ TR L+ K + G G GK+T+ + G+ Y + Sbjct: 178 DNELTVKMTRAFFAGLVHKVKNPNVKFDLVLDLVGGQGIGKTTMFEKLG---GDYYTDSI 234 Query: 534 EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNY 593 + SLI + + IV E +D+ + + +K M R+ Y Sbjct: 235 TSFT-----------DKDSLIEMSKNLIVNDDEMAISDKTDFSTLKSFITKRTMNIRVPY 283 Query: 594 GNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVI 630 T + P F N + ++R+ RR+I + Sbjct: 284 AETSKDYPKGFVLVRTTNNNEYLRDKTG--NRRFITM 318 >gi|190893408|ref|YP_001979950.1| hypothetical protein RHECIAT_CH0003834 [Rhizobium etli CIAT 652] gi|190698687|gb|ACE92772.1| hypothetical protein RHECIAT_CH0003834 [Rhizobium etli CIAT 652] Length = 811 Score = 43.7 bits (101), Expect = 0.13, Method: Composition-based stats. Identities = 29/174 (16%), Positives = 50/174 (28%), Gaps = 21/174 (12%) Query: 470 LDLVSGYFESEEVMDYFTRCVGMALLG--GNKAQRFIHIRGVGGSGKSTLMNL-IKYAFG 526 L E +F R + L + GV G+G+ +L N + FG Sbjct: 459 LRFFQHLLPDERERAWFLRWLAYKLRRPEIPGPGVVMVAHGVHGTGRGSLTNALLPALFG 518 Query: 527 NQYVINAEASDIMQNRPPEAGK--------ANPSLIRLMGSRIVIISETNENDEINAAKI 578 +QYV E SD+ A G+ + Sbjct: 519 SQYVKKVELSDLTGRDGQGAFNEFASDSLIVTVDEASDEGASPRYAQ-----RRKAYDAL 573 Query: 579 KQMTGGDC--MTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVI 630 K + + R +G+ E + ++ DD RR+ ++ Sbjct: 574 KSLVEPAPRRIRIRRKFGSIGDEMTNASYLICTNHRDAIAIPHDD---RRFAIL 624 >gi|116696318|ref|YP_841894.1| putative helicase [Ralstonia eutropha H16] gi|113530817|emb|CAJ97164.1| putative helicase [Ralstonia eutropha H16] Length = 668 Score = 43.7 bits (101), Expect = 0.13, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 29/82 (35%), Gaps = 13/82 (15%) Query: 225 SHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYD-EENFNYKWDTFDFEEIGDTAKK 283 S EWI + MA + E WS+ Y E + W++FD Sbjct: 23 SRGEWIRLGMAAK----AAGLSFEDFHLWSQNAPNYKGERDCLTAWNSFD--------DG 70 Query: 284 RSTFTSLFYHHGKLIPKGLLAS 305 T ++LF +GL + Sbjct: 71 PITESTLFRAARDAGWQGLYKA 92 >gi|195575129|ref|XP_002105532.1| GD16958 [Drosophila simulans] gi|194201459|gb|EDX15035.1| GD16958 [Drosophila simulans] Length = 400 Score = 43.7 bits (101), Expect = 0.13, Method: Composition-based stats. Identities = 43/313 (13%), Positives = 88/313 (28%), Gaps = 48/313 (15%) Query: 368 DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSR 427 E + + N++ + E GS + +D + Sbjct: 21 QKISELQFTVNERQKNLLRLQAQRNELNLKVRLLREELQLLQEQGSYIAEVVKPMDKNKV 80 Query: 428 FLGE-QDGILDLETGQKVK------------PTKELYITKSTGTPFVEGEPSQEFLD--- 471 + +G ++ + + + + K Sbjct: 81 LVKVHPEGKYVVDVDKTINIKDVTPSSRVALRNESYTLHKILPNKVDPLVSLMLVEKVPD 140 Query: 472 --------LVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTL 517 L E +EV++ +G+A + + + G G+GK+ L Sbjct: 141 STYEMVGGLDKQIQEIKEVIELPVKHPELFDALGIA------QPKGVLLYGPPGTGKTLL 194 Query: 518 MNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK 577 + + I S+++Q E + L + I +E D I +A+ Sbjct: 195 ARAVAH-HTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSAR 253 Query: 578 IKQMTGGDCMT---ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR--RY-IVIP 631 ++ TG + L E+ + + N+ + D A R R I Sbjct: 254 LETGTGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDVL---DQALLRPGRIDRKIE 310 Query: 632 FDKPIANRDASFA 644 F P N +A Sbjct: 311 F--PPPNEEARLD 321 >gi|195341572|ref|XP_002037380.1| GM12144 [Drosophila sechellia] gi|194131496|gb|EDW53539.1| GM12144 [Drosophila sechellia] Length = 400 Score = 43.7 bits (101), Expect = 0.13, Method: Composition-based stats. Identities = 43/313 (13%), Positives = 88/313 (28%), Gaps = 48/313 (15%) Query: 368 DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSR 427 E + + N++ + E GS + +D + Sbjct: 21 QKISELQFTVNERQKNLLRLQAQRNELNLKVRLLREELQLLQEQGSYIAEVVKPMDKNKV 80 Query: 428 FLGE-QDGILDLETGQKVK------------PTKELYITKSTGTPFVEGEPSQEFLD--- 471 + +G ++ + + + + K Sbjct: 81 LVKVHPEGKYVVDVDKTINIKDVTPSSRVALRNESYTLHKILPNKVDPLVSLMLVEKVPD 140 Query: 472 --------LVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTL 517 L E +EV++ +G+A + + + G G+GK+ L Sbjct: 141 STYEMVGGLDKQIQEIKEVIELPVKHPELFDALGIA------QPKGVLLYGPPGTGKTLL 194 Query: 518 MNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK 577 + + I S+++Q E + L + I +E D I +A+ Sbjct: 195 ARAVAH-HTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSAR 253 Query: 578 IKQMTGGDCMT---ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR--RY-IVIP 631 ++ TG + L E+ + + N+ + D A R R I Sbjct: 254 LETGTGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDVL---DQALLRPGRIDRKIE 310 Query: 632 FDKPIANRDASFA 644 F P N +A Sbjct: 311 F--PPPNEEARLD 321 >gi|301115494|ref|XP_002905476.1| conserved hypothetical protein [Phytophthora infestans T30-4] gi|262110265|gb|EEY68317.1| conserved hypothetical protein [Phytophthora infestans T30-4] Length = 155 Score = 43.7 bits (101), Expect = 0.14, Method: Composition-based stats. Identities = 9/74 (12%), Positives = 22/74 (29%), Gaps = 2/74 (2%) Query: 581 MTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANR- 639 M ++ + + + + N + RR +++ F K + + Sbjct: 1 MLTRGSISCPVKGKGSIEVLDWNIPTRLNSNHMPNYTDEAGEIARRLMIVKFGKQVPDDE 60 Query: 640 -DASFAQKLETKYT 652 D QK+ Sbjct: 61 VDVELEQKVLLIER 74 >gi|27380128|ref|NP_771657.1| hypothetical protein bll5017 [Bradyrhizobium japonicum USDA 110] gi|27353282|dbj|BAC50282.1| bll5017 [Bradyrhizobium japonicum USDA 110] Length = 404 Score = 43.7 bits (101), Expect = 0.14, Method: Composition-based stats. Identities = 27/147 (18%), Positives = 48/147 (32%), Gaps = 15/147 (10%) Query: 485 YFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544 + V G K + + G G+ KS+ ++ G+ Y N Sbjct: 151 FLISLVARICEPGAKVDYMLVLEGTQGAMKSSACAILG---GDYYSDNLP---------- 197 Query: 545 EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604 E G+ L G ++ I E + +A++K R +YG P Sbjct: 198 EIGEGKDVSQHLRGKWLIEIGEMHALKRAESAQLKAFITRQVERYRPSYGRFEVTEPRQC 257 Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIP 631 NK ++R+ RR+ + Sbjct: 258 VFIGTTNKDAYLRDETGG--RRFWPVK 282 >gi|291398411|ref|XP_002715511.1| PREDICTED: protease (prosome, macropain) 26S subunit, ATPase 5-like, partial [Oryctolagus cuniculus] Length = 334 Score = 43.7 bits (101), Expect = 0.14, Method: Composition-based stats. Identities = 43/262 (16%), Positives = 82/262 (31%), Gaps = 32/262 (12%) Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP----TKELYITKS 455 K K + G +D + + + L K + Sbjct: 9 DKKKVLVKVHPEGKFVVDVDKNIDINDV---TPNCRVALRNDSYTLHKILPNKVDPLVSL 65 Query: 456 TGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGV 509 V + L E +EV++ F +G+A + + + G Sbjct: 66 MMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHLEFFEALGIA------QSKGVLLYGP 119 Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569 G+GK+ L + + + I S+++Q E + L+ + I +E Sbjct: 120 PGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELLVMAREHAPSIIFMDE 178 Query: 570 NDEINAAKIKQMTGGDC----MTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625 D I +++++ +GGD M L E+ + + N+ + D R Sbjct: 179 IDSIGSSRLEGGSGGDSEVQRMMLELLNQLDGFEATKNIKVIMATNRIDIL---DSTLLR 235 Query: 626 --RY-IVIPFDKPIANRDASFA 644 R I F P N +A Sbjct: 236 PGRIDRKIEF--PPPNEEARLD 255 >gi|289661963|ref|ZP_06483544.1| hypothetical protein XcampvN_02386 [Xanthomonas campestris pv. vasculorum NCPPB702] Length = 577 Score = 43.7 bits (101), Expect = 0.14, Method: Composition-based stats. Identities = 35/180 (19%), Positives = 70/180 (38%), Gaps = 22/180 (12%) Query: 468 EFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIH----IRGVGGSGKSTLMNLIKY 523 ++L + F + ++ T G +A G G+GK+TL+ + Sbjct: 202 DWLPWLWQCFGTHGMVA-MTFWFGSLFAEQIRAGHKSFPFLEATGEAGAGKTTLLTFLWK 260 Query: 524 AFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVII----SETNE--NDEINAAK 577 G ++ + +AG+A ++ ++ G +V++ SE ++ + + Sbjct: 261 LLGR-----SDYEGFDPAKSSKAGRAR-AMGQVSGMPVVLLEADRSEPDKAHSKTFEWDE 314 Query: 578 IKQMTGGDCMTAR--LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP 635 +K GG + R N GN E P T I N + + +A R + + F +P Sbjct: 315 LKDFFGGGTLATRGVRNGGNETYEPPFRGTIVITQNAAV---DASEAILTRIVKLHFKRP 371 >gi|150006226|ref|YP_001300970.1| hypothetical protein BVU_3737 [Bacteroides vulgatus ATCC 8482] gi|149934650|gb|ABR41348.1| conserved hypothetical protein [Bacteroides vulgatus ATCC 8482] Length = 230 Score = 43.7 bits (101), Expect = 0.14, Method: Composition-based stats. Identities = 26/180 (14%), Positives = 53/180 (29%), Gaps = 18/180 (10%) Query: 433 DGILDLETGQKVKPTKELYITKSTGTPFVEGE-PSQEFLDLVSGYFESE-EV-MDYFTRC 489 DG + + K ++ + + +L+ F E+ MDYF Sbjct: 64 DGFCTVPSHVDYKRNIGSFLNLYEPITHIPQKGKFPHIQELIHHIFGEHYELGMDYFQLL 123 Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549 L K + + +GKST +N +K F + N Q Sbjct: 124 Y---LNPVQKLPILLLVSQERNTGKSTFLNFLKAIFQDNVTFNTNEDFRSQFN------- 173 Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNT-YSESPASFTPFI 608 G ++ + E N ++ ++K ++ + + F + Sbjct: 174 ----ADWAGKLLIGVDEVLLNRREDSERLKNLSTASVYKIEAKGKDRCEVQFFGKFIMWF 229 >gi|166079181|gb|ABY81292.1| non-structural protein NS1 [Aleutian mink disease virus] Length = 175 Score = 43.3 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 26/141 (18%), Positives = 41/141 (29%), Gaps = 17/141 (12%) Query: 458 TPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTL 517 F E E + L + +E Y + + L + + I G GG+GK+ L Sbjct: 45 IKFNEEEDDKPLLATIKDMGLNE---KYLKKALCTILTKQSGKRGCIWFYGPGGTGKTLL 101 Query: 518 MNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK 577 +LI A N ++ N I+ E Sbjct: 102 ASLICKATVNFGMVTT-------------SNPNFPWTDCGNRNIIWAEECGNFGNWVED- 147 Query: 578 IKQMTGGDCMTARLNYGNTYS 598 K +TGG + S Sbjct: 148 FKAITGGGDVKVDTKNKQPQS 168 >gi|303239097|ref|ZP_07325627.1| virulence-associated E family protein [Acetivibrio cellulolyticus CD2] gi|302593435|gb|EFL63153.1| virulence-associated E family protein [Acetivibrio cellulolyticus CD2] Length = 790 Score = 43.3 bits (100), Expect = 0.14, Method: Composition-based stats. Identities = 38/279 (13%), Positives = 75/279 (26%), Gaps = 46/279 (16%) Query: 425 SSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEE--- 481 + G ++ + + + K E + L+ YF++E+ Sbjct: 422 DRTYGLFSKGKYNIAVTKVSD-DRSYHPIKDFLNGLPEWDGVPRADTLLIEYFDAEDNEY 480 Query: 482 ----VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASD 537 V G K + + G G GKSTL + + + + + SD Sbjct: 481 VREVTRKTLCAAVARVFEPGIKFDYMLVLNGKQGIGKSTLFRKLGSPW---FCDSLQLSD 537 Query: 538 IMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY 597 E +L G I+ +SE + + +K R +G Sbjct: 538 THDKTAAE---------KLQGYWILEVSEMAGMKKTDIETLKAFITRQEDVYRATFGKRA 588 Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWW------RRYIVIPFDKPIANRDASFAQKLETKY 651 P N D + RR+ + + +D + + Sbjct: 589 VPHPRQCIFVGTTN-------SDRGFLRDITGNRRFWPVK--VQMGKKDPR---DITLEE 636 Query: 652 TLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGT 690 + W + + Y + L E + Sbjct: 637 VRQV--WA-EVMVRYRANELL-----CLKGEAERYAEEM 667 >gi|149054555|gb|EDM06372.1| peptidase (prosome, macropain) 26S subunit, ATPase 5, isoform CRA_a [Rattus norvegicus] Length = 385 Score = 43.3 bits (100), Expect = 0.15, Method: Composition-based stats. Identities = 40/251 (15%), Positives = 77/251 (30%), Gaps = 30/251 (11%) Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP----TKELYITKS 455 K K + G +D + + + L K + Sbjct: 91 DKKKVLVKVHPEGKFVVDVDKNIDINDV---TPNCRVALRNDSYTLHKILPNKVDPLVSL 147 Query: 456 TGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGV 509 V + L E +EV++ +G+A + + + G Sbjct: 148 MMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIA------QPKGVLLYGP 201 Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569 G+GK+ L + + + I S+++Q E + L + I +E Sbjct: 202 PGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDE 260 Query: 570 NDEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625 D I +++++ +GGD R L E+ + + N+ + D A R Sbjct: 261 IDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DSALLR 317 Query: 626 --RY-IVIPFD 633 R I F Sbjct: 318 PGRIDRKIEFP 328 >gi|21410100|gb|AAH30840.1| Psmc5 protein [Mus musculus] gi|148702337|gb|EDL34284.1| protease (prosome, macropain) 26S subunit, ATPase 5, isoform CRA_c [Mus musculus] Length = 348 Score = 43.3 bits (100), Expect = 0.15, Method: Composition-based stats. Identities = 40/251 (15%), Positives = 77/251 (30%), Gaps = 30/251 (11%) Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP----TKELYITKS 455 K K + G +D + + + L K + Sbjct: 81 DKKKVLVKVHPEGKFVVDVDKNIDINDV---TPNCRVALRNDSYTLHKILPNKVDPLVSL 137 Query: 456 TGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGV 509 V + L E +EV++ +G+A + + + G Sbjct: 138 MMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIA------QPKGVLLYGP 191 Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569 G+GK+ L + + + I S+++Q E + L + I +E Sbjct: 192 PGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDE 250 Query: 570 NDEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625 D I +++++ +GGD R L E+ + + N+ + D A R Sbjct: 251 IDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DSALLR 307 Query: 626 --RY-IVIPFD 633 R I F Sbjct: 308 PGRIDRKIEFP 318 >gi|167761844|ref|ZP_02433971.1| hypothetical protein BACSTE_00187 [Bacteroides stercoris ATCC 43183] gi|167700350|gb|EDS16929.1| hypothetical protein BACSTE_00187 [Bacteroides stercoris ATCC 43183] Length = 293 Score = 43.3 bits (100), Expect = 0.15, Method: Composition-based stats. Identities = 26/218 (11%), Positives = 58/218 (26%), Gaps = 34/218 (15%) Query: 60 VGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVR------IGQKPKILIPFRMNKEGI 113 V L DID KD + + + + L + G ++IP + Sbjct: 77 VRHSGLICVDIDRKDNLHIDNWDEIKQELCKLKEIAYISLSVSGNGYFVIIPLKYPHAHK 136 Query: 114 KKKKTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYL 173 + + + + I+ P + + Sbjct: 137 GQFEKLKQDFARIGIIID----------PACGDVTRMRCLSYDAEP-------------- 172 Query: 174 FKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVV 233 + + I + S ++ +N + + G + G + +W V Sbjct: 173 YINVEAIPYDGYYKEPRPTNSYQYSGGDNVLDKVAKCCEKIEANGIDI-TGDYKDWFTVG 231 Query: 234 MAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDT 271 A+ G+ S+Q + Y + K+ Sbjct: 232 CALASL---GESGRSFFHICSRQNTKYKYAETDKKFSN 266 >gi|319778340|ref|YP_004129253.1| toprim domain protein [Taylorella equigenitalis MCE9] gi|317108364|gb|ADU91110.1| toprim domain protein [Taylorella equigenitalis MCE9] Length = 311 Score = 43.3 bits (100), Expect = 0.15, Method: Composition-based stats. Identities = 23/124 (18%), Positives = 38/124 (30%), Gaps = 6/124 (4%) Query: 232 VVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLF 291 + A+ E S G EI WSK+ S Y+E++ W + I + + Sbjct: 1 MGGAIKSEYGDS--GFEIWNGWSKRASNYEEKSAKSTWRSLKEGRINIASLFYEARKHGY 58 Query: 292 YHHGKLIPKGLLASRFSDA--YNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLD 349 K LA R +D K ++ L + K+ N Sbjct: 59 KDINKTYSSQELAKRQADYALIRKKREEEFRASRLLEAKQKEESIKESLNRW--NDGLYF 116 Query: 350 KITA 353 + Sbjct: 117 REKD 120 >gi|328791134|ref|XP_625184.3| PREDICTED: fidgetin-like protein 1-like [Apis mellifera] Length = 657 Score = 43.3 bits (100), Expect = 0.15, Method: Composition-based stats. Identities = 35/361 (9%), Positives = 105/361 (29%), Gaps = 25/361 (6%) Query: 277 IGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKK 336 I ++ + + F K L + + + K HF + + + K Sbjct: 193 INNSVDENISAQISFSKQSKSHSNLNLNQKNQNYVQQRSIKYEPKSHFRFEKEDSSKTYK 252 Query: 337 DKNNVYIWSLTLDK-ITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQN 395 + + +S K + + ++ + + N +++ Sbjct: 253 NNHESLNFSRNHMKLKSQKSVQHNEEDFNIAKPKINGFFKTARDELNVQMKTNKSMQKKT 312 Query: 396 VEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKS 455 + S I ++ ++ + +D L + V+ K + Sbjct: 313 LGGKISVNSQFVCPFKREKEKIQENMYNNEIDTMEVEDERLKNVEPKMVELIKNEIMDSK 372 Query: 456 TGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKS 515 T + + + ++ + G + + I + G G+GK+ Sbjct: 373 TTICWDDIAGLEYAKKIIKEVVVYPMLRP-------DIFTGLRRPPKGILLFGPPGTGKT 425 Query: 516 TLMNLIKYAFGNQYVINAEASDIMQ--NRPPEAGKANPSLIRLMGSRIVIISETNENDEI 573 + I + + + +S + + +A ++ R+ ++ + E + Sbjct: 426 LIGKCIASQSKSTFFSISASSLTSKWIGEGEKMVRALFAVARVYQPSVIFVDEID----- 480 Query: 574 NAAKIKQMTGGDCMTARLNYG------NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627 + + Q + + ++R + + + + D+A RR Sbjct: 481 --SLLTQRSETEHESSRRLKTEFLVQLDGAATADEDCILIVGATNRP--HELDEAARRRL 536 Query: 628 I 628 + Sbjct: 537 V 537 >gi|115712886|ref|XP_784151.2| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] gi|115942106|ref|XP_001184577.1| PREDICTED: hypothetical protein [Strongylocentrotus purpuratus] Length = 401 Score = 43.3 bits (100), Expect = 0.16, Method: Composition-based stats. Identities = 51/303 (16%), Positives = 96/303 (31%), Gaps = 39/303 (12%) Query: 358 FLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSI 417 + V L EE + + +++ + + E + I Sbjct: 43 QRNELNAKVRMLREELQLLQEQGSHVGEVVKAMDKKKVLVKV--------HPEGKFVVDI 94 Query: 418 --TSDLLDSSSR-FLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVS 474 + D+ D + ++ D T K+ P K + V + L Sbjct: 95 DKSIDINDVQPNCRVALRN---DSHTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDK 151 Query: 475 GYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 E +EV++ +G+A + + + G G+GK+ L + + Sbjct: 152 QIKEIKEVIELPVKHPELFDALGIA------QPKGVLLYGPPGTGKTLLARAVAH-HTEC 204 Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588 I S+++Q E + L + I +E D I + +I+ +GGD Sbjct: 205 TFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRIEGSSGGDSEV 264 Query: 589 AR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR--RY-IVIPFDKPIANRDA 641 R L E+ + + N+ + D A R R I F P N +A Sbjct: 265 QRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DSALLRPGRIDRKIEF--PPPNEEA 319 Query: 642 SFA 644 Sbjct: 320 RLD 322 >gi|37528278|ref|NP_931623.1| hypothetical protein plu4457 [Photorhabdus luminescens subsp. laumondii TTO1] gi|36787715|emb|CAE16829.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1] Length = 373 Score = 43.3 bits (100), Expect = 0.16, Method: Composition-based stats. Identities = 30/216 (13%), Positives = 69/216 (31%), Gaps = 31/216 (14%) Query: 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLM- 557 + R G G GK+ + + G + + + + +L Sbjct: 129 QPTRSAIFVGPPGVGKTLTASWLAQKLGVPFYVLDLTAVMSSYLGKSGNNLRAALDFAKR 188 Query: 558 GSRIVIISETN-----ENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612 G ++++ E + +D+ + ++K++ + P+S N Sbjct: 189 GPCVLLLDEIDSIAKKRSDDSDVGELKRLVT--------VILQEVDQWPSSSVLLAATNY 240 Query: 613 HLFVRNPDDAWWRRY-IVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGL 671 + D A WRR+ +V+ F+KP + Q+ +W + + Sbjct: 241 EELI---DPALWRRFDLVLHFEKPDSETIKEAIQRFLGSDYAIFARW-IDILVILFKNES 296 Query: 672 DVDIPEVCLKAKEEERQG------TD--TYQAWIDD 699 +I + R+ +D + +I D Sbjct: 297 FSNIERSI----NKFRRSIALGIASDEVLIEDFIKD 328 >gi|212286059|ref|YP_002308366.1| replication protein [Chelonia mydas papillomavirus 1] gi|187941629|gb|ACD39807.1| replication protein [Chelonia mydas papillomavirus 1] Length = 559 Score = 43.3 bits (100), Expect = 0.16, Method: Composition-based stats. Identities = 30/205 (14%), Positives = 53/205 (25%), Gaps = 33/205 (16%) Query: 450 LYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGV 509 T + L + F + + L + I GV Sbjct: 331 DRCEHHTDYDPDGWKNILLMLRFQNIALAD------FLQALRNCL-HCVPKKCCIAFVGV 383 Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISET-- 567 SGKS L ++ + +++ L L +I +I + Sbjct: 384 PDSGKSML------------CMSLIEFLEGRVLSFSNARSHFWLQPLGECKIALIDDATR 431 Query: 568 NENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDA----- 622 D I ++ G+ + Y I N + + + Sbjct: 432 PCWDYI-ETYLRNALDGNPVCIDAKYKAPVQIRCPP--ILITSNVDIRQGDQINGVLQES 488 Query: 623 ----WWRRYIVIPFDKPIANRDASF 643 R V PFD+PI R+ Sbjct: 489 TYKYLLNRICVFPFDRPIPIREGRL 513 >gi|138374975|gb|ABO76875.1| putative replication protein E1 [Human papillomavirus type 66] Length = 630 Score = 43.3 bits (100), Expect = 0.17, Method: Composition-based stats. Identities = 22/184 (11%), Positives = 51/184 (27%), Gaps = 17/184 (9%) Query: 454 KSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSG 513 K + EG + + + ++ + + + + L G K + + G +G Sbjct: 408 KHICSKVDEGGDWKPIVQFLR--YQGVDFISFL-SYFKLFLQGTPKHN-CLVLCGPPNTG 463 Query: 514 KSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI 573 KS + F + + Q+ N L L + ++ Sbjct: 464 KSCFAMSLINFF----QGSVISFVNSQSHFWLQPLDNAKLGLLDDATDTCWRYIDDY--- 516 Query: 574 NAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFD 633 ++ + G+ ++ + I N + R V F+ Sbjct: 517 ----LRNLLDGNPISLDRKHKQLVQIKCPP--VIITTNVNPMQDAKLRYLRSRISVFKFE 570 Query: 634 KPIA 637 P Sbjct: 571 NPFP 574 >gi|294673328|ref|YP_003573944.1| hypothetical protein PRU_0575 [Prevotella ruminicola 23] gi|294472091|gb|ADE81480.1| conserved hypothetical protein [Prevotella ruminicola 23] Length = 403 Score = 43.3 bits (100), Expect = 0.17, Method: Composition-based stats. Identities = 47/301 (15%), Positives = 98/301 (32%), Gaps = 42/301 (13%) Query: 467 QEFL--DLVSGYFE-----SEEVMDYFTRCVGMALLGGNKAQRFIH------IRGVGGSG 513 ++ + ++ F S E +D+ A+ + + + G G G Sbjct: 108 PKWDGQNHLAKLFSRLPGISSEQLDFLIIWFRSAVAHWLQKDKLHANESVPTLIGSQGCG 167 Query: 514 KSTLMNLIKYA-FGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDE 572 KST + + Y + ++ E N L+ L E + Sbjct: 168 KSTFIARLLPPELQEYY---LDHLNLSNKFDKEMALTNNLLVNL--------DELDAIRP 216 Query: 573 INAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF 632 A +KQ + R YG++ + P + N + + + RR+I I Sbjct: 217 SQQAALKQTLSKIKVNGRTIYGSSQQDRPRYASFVATTNNPHPLSDVTGS--RRFICIE- 273 Query: 633 DKPIANRD-ASFAQKLETKYTLEAKKWFLKGVKA--YISKGLDVDIPEVCLKAKEEERQG 689 I + A +++ + + + +KA + + + + Sbjct: 274 ---IPDGQYIDNAGEIDYEQLYAQLVYEVNELKAPYWFTNEQV----ARIQELNQNYTDE 326 Query: 690 TDTYQAWIDDCCDIGENLWEESHSL-AKSYSEYREQELNYDRKRISTR-TVTLNLKQKGF 747 D + I + C N E+ ++ E +E +K +ST+ + L +K GF Sbjct: 327 KDITE--IIEACFRKPNEGEKVKAMNCTQMLELISKEYPSLKKTVSTKVHLGLAMKDLGF 384 Query: 748 I 748 Sbjct: 385 E 385 >gi|255722075|ref|XP_002545972.1| ATPase family AAA domain-containing protein 1-A [Candida tropicalis MYA-3404] gi|240136461|gb|EER36014.1| ATPase family AAA domain-containing protein 1-A [Candida tropicalis MYA-3404] Length = 364 Score = 43.3 bits (100), Expect = 0.17, Method: Composition-based stats. Identities = 43/314 (13%), Positives = 86/314 (27%), Gaps = 45/314 (14%) Query: 445 KPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALL--------- 495 KE+ + +E +++D V + L Sbjct: 69 PHLKEVSFNQYEKALLNSLVTPEEISVTFEDIGGLHDIIDELREAVILPLTEPELFAAHS 128 Query: 496 GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ--NRPPEAGKANPSL 553 ++ + + G G GK+ L I G ++ +S + + + A SL Sbjct: 129 SLIQSPKGVLFYGPPGCGKTMLAKAIAKESGAFFLSIRMSSIMDKWYGESNKITDAIFSL 188 Query: 554 IRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKH 613 + I+ I E + ++ +++ + A +S N+ Sbjct: 189 ANKLQPCIIFIDEIDSFLRDRSSTDHEVSA--MLKAEFMTLWDGLKSNGQIMVLGATNRK 246 Query: 614 LFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDV 673 + D+A+ RR K A K + LK K + D+ Sbjct: 247 ---NDIDEAFLRRM-----PKTFA------IGKPDASQRTSILNKILKDAK-LDEQDFDL 291 Query: 674 DIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYR------EQELN 727 E + G+D + + C E K Y+ + N Sbjct: 292 ---ETIVANTRGY-SGSD-----LREMCR--EAAIIPVREYIKENYNYKSGKLSRDDNDN 340 Query: 728 YDRKRISTRTVTLN 741 + + T Sbjct: 341 LPVRPLRTSDFVKT 354 >gi|212535938|ref|XP_002148125.1| proteasome regulatory particle subunit Rpt6, putative [Penicillium marneffei ATCC 18224] gi|210070524|gb|EEA24614.1| proteasome regulatory particle subunit Rpt6, putative [Penicillium marneffei ATCC 18224] Length = 321 Score = 43.3 bits (100), Expect = 0.17, Method: Composition-based stats. Identities = 34/208 (16%), Positives = 68/208 (32%), Gaps = 18/208 (8%) Query: 435 ILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRC--VGM 492 LE + + P + + +EV++ + + Sbjct: 103 TYKLEKMLPSSVDPLVSLMMVEKVPDSTYDMIGGLDQQIKEI---KEVIELGLKHPELFE 159 Query: 493 ALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS 552 +L G + + + G G+GK+ L + + + I S+++Q E + Sbjct: 160 SL--GIAQPKGVLLYGPPGTGKTLLARAVAH-HADCKFIRVSGSELVQKYIGEGSRMVRE 216 Query: 553 LIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFI 608 L + I +E D I +++++ +GGD R L E + + Sbjct: 217 LFVMAREHAPSIIFMDEIDSIGSSRVEGSSGGDSEVQRTMLELLNQLDGFEPTKNIKIIM 276 Query: 609 VPNKHLFVRNPDDAWWR--RY-IVIPFD 633 N+ + D A R R I F Sbjct: 277 ATNRLDIL---DPALLRPGRIDRKIEFP 301 >gi|212535936|ref|XP_002148124.1| proteasome regulatory particle subunit Rpt6, putative [Penicillium marneffei ATCC 18224] gi|210070523|gb|EEA24613.1| proteasome regulatory particle subunit Rpt6, putative [Penicillium marneffei ATCC 18224] Length = 389 Score = 43.3 bits (100), Expect = 0.17, Method: Composition-based stats. Identities = 34/208 (16%), Positives = 68/208 (32%), Gaps = 18/208 (8%) Query: 435 ILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRC--VGM 492 LE + + P + + +EV++ + + Sbjct: 103 TYKLEKMLPSSVDPLVSLMMVEKVPDSTYDMIGGLDQQIKEI---KEVIELGLKHPELFE 159 Query: 493 ALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS 552 +L G + + + G G+GK+ L + + + I S+++Q E + Sbjct: 160 SL--GIAQPKGVLLYGPPGTGKTLLARAVAH-HADCKFIRVSGSELVQKYIGEGSRMVRE 216 Query: 553 LIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFI 608 L + I +E D I +++++ +GGD R L E + + Sbjct: 217 LFVMAREHAPSIIFMDEIDSIGSSRVEGSSGGDSEVQRTMLELLNQLDGFEPTKNIKIIM 276 Query: 609 VPNKHLFVRNPDDAWWR--RY-IVIPFD 633 N+ + D A R R I F Sbjct: 277 ATNRLDIL---DPALLRPGRIDRKIEFP 301 >gi|307172984|gb|EFN64126.1| Fidgetin-like protein 1 [Camponotus floridanus] Length = 636 Score = 43.3 bits (100), Expect = 0.17, Method: Composition-based stats. Identities = 45/413 (10%), Positives = 131/413 (31%), Gaps = 54/413 (13%) Query: 254 SKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAY-- 311 S +G +Y++ + + + ++ D K++ + S + + LL S S+ Sbjct: 114 SCKGRSYNDRDIEKIVN--NSKKNKDMPKEKISLQSQASSNQNSNKELLLKSNNSEQNIS 171 Query: 312 --------NKAMFSIYKKGHFLYTADTKAWYKK------------DKNNVYIWSLTLDKI 351 N + ++ ++ ++ Y+ + N + + Sbjct: 172 TYFTNIHRNDSSSKHIQQNASKIQSNKQSCYQNLDKFVQKRPILSNNNTNDTIEGSYGRT 231 Query: 352 TASIMNFLVSMKEDVFD----LSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQ 407 + + D + + D+ ++++ + + ++ +STA Sbjct: 232 NSYAPKLKRAASPQSRDEDTKIGKNTFDSFRSARDELYIQEMKRNKSAPKKTLGGRSTAN 291 Query: 408 SLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGT-PFVEGEPS 466 S + S++ + + ++E + ++ + + Sbjct: 292 SQFVCPFKRDKEKSMQSNTSLQNKAN-PEEVEDERLRNIDPDMIELIRSEIMESGKTITW 350 Query: 467 QEF--LDLVSGYFESEEVMDY-FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKY 523 + L+ + +EV+ + R G + + I G G+GK+ + I Sbjct: 351 DDIAGLEYIKKIV--KEVVVFPMLRP--DIFTGLRRPPKGILFFGPPGTGKTLIGKCIAS 406 Query: 524 AFGNQYVINAEASDIMQ--NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQM 581 + + + +S + + +A ++ R+ +V I E + + + Q Sbjct: 407 QSKSTFFSISASSLTSKWIGNGEKMVRALFAVARVHQPSVVFIDEID-------SLLTQR 459 Query: 582 TGGDCMTARLNYG------NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYI 628 + + ++R + + S + D+A RR + Sbjct: 460 SETEHESSRRLKTEFLVQLDGATTSEDDRILIVGATNRPQ--ELDEAARRRLV 510 >gi|291435915|ref|ZP_06575305.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] gi|291338810|gb|EFE65766.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672] Length = 200 Score = 43.3 bits (100), Expect = 0.17, Method: Composition-based stats. Identities = 17/145 (11%), Positives = 35/145 (24%), Gaps = 23/145 (15%) Query: 3 VMQWKEQAKQAIHNGFKLIPLRLGD-KRPQ----RLGKWEEQLLSSEKIDKLPACGFGFV 57 QW + + +PL KR W + G GFV Sbjct: 50 RSQWVRYSD-------RKVPLSARSPKRSAASSTDPETWSSYSAAKR---STAGVGVGFV 99 Query: 58 CGVGEQPLYAFDIDSKDEKTANTFKDTFEILH---GTPIVRIGQKPKILIPFRMNKEGIK 114 L D+D + + + L + ++ Sbjct: 100 L-SPVDRLVCIDLDH--ALIGGVLAGWAREIVDRVPRTYIEVSPSGTGLHIWGYGT--VE 154 Query: 115 KKKTTESTQGHLDILGCGQYFVAYN 139 + + + +++ G+Y Sbjct: 155 RGRRIRRGEASVEVYDRGRYITVTG 179 >gi|195661186|ref|YP_002117841.1| E1 [Tursiops truncatus papillomavirus 1] gi|165909219|gb|ABY73445.1| E1 [Tursiops truncatus papillomavirus 1] Length = 639 Score = 43.3 bits (100), Expect = 0.17, Method: Composition-based stats. Identities = 28/210 (13%), Positives = 62/210 (29%), Gaps = 22/210 (10%) Query: 465 PSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA 524 + + + + S E+M + L G K+ + + G SGKS + Sbjct: 429 DWRPIMKFLK--YHSVEIMPFLM-FFRRFLKGIPKSN-CLVLYGPANSGKSYFAMSLINM 484 Query: 525 FGNQYVINAEASDIMQNRPPEAGKANPSLIRLM-GSRIVIISETNENDEINAAKIKQMTG 583 G + + + A K++ L L G ++ T + ++ + Sbjct: 485 LGGKVISHVNA------------KSHFWLQPLADGKIALLDDATPSTWDYMDTFLRNLLD 532 Query: 584 GDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA-NRDAS 642 G+ ++ + + N ++ R I F P + Sbjct: 533 GNTISLDTKHKAPLQIRSPP--LIVTTNYNVLENEKWKYLHSRIKQISFLNPCPLDCRGD 590 Query: 643 FAQKLETKYTLEAKK--WFLKGVKAYISKG 670 KL + + W + + +G Sbjct: 591 PEIKLNNQNWKAFFEKCWARLSLDDLLEEG 620 >gi|695370|gb|AAC41735.1| thyroid receptor interactor [Homo sapiens] gi|1094810|prf||2106382A thyroid hormone receptor-interacting protein Length = 406 Score = 43.3 bits (100), Expect = 0.18, Method: Composition-based stats. Identities = 41/262 (15%), Positives = 78/262 (29%), Gaps = 32/262 (12%) Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP----TKELYITKS 455 K K + G +D + + + L K + Sbjct: 81 DKKKVLVKVHPEGKFVVDVDKNIDINDV---TPNCRVALRNDSYTLHKILPNKVDPLVSL 137 Query: 456 TGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGV 509 V + L E +EV++ +G+A + + + G Sbjct: 138 MMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIA------QPKGVLLYGP 191 Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569 G+GK+ L + + + I S+++Q E + L + I +E Sbjct: 192 PGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDE 250 Query: 570 NDEINAAKIKQMTGGDCMTARL----NYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625 D I +++++ +GG R E+ + + N + D A R Sbjct: 251 IDSIGSSRLEGGSGGSSEVQRQMLELLNQLDGFEATKNIKVIMATN---RIDMLDSALLR 307 Query: 626 --RY-IVIPFDKPIANRDASFA 644 R I F P N +A Sbjct: 308 PGRIDRKIEF--PPPNEEARLD 327 >gi|452709|emb|CAA54352.1| NS-1 [Aleutian mink disease virus] Length = 641 Score = 43.3 bits (100), Expect = 0.18, Method: Composition-based stats. Identities = 52/367 (14%), Positives = 100/367 (27%), Gaps = 54/367 (14%) Query: 279 DTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAW----- 333 + R+ ++ G P + YNK +L+ D Sbjct: 172 QDSDGRADNLKIWIEDGPTKPYKYFNKQTKQDYNKPTNLRDYTLIYLFNKDKITQEGMDG 231 Query: 334 YKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPED--------NNKNSKSPRF 385 Y N I +LT + A +L + + D + ED + +S + + Sbjct: 232 YYASGNGGIIDNLTNKERKALRKMYLDEQSQGILDEDIDWEDSQSAPKVTDQTDSATSKT 291 Query: 386 WFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGE-------------- 431 + ++ + SK + + + + LD F Sbjct: 292 GTSLVWKSCATKVTSKKEVAIPVKQPSKKMTSAQNTLDDLYMFGCFTPEDMILKMSDRYL 351 Query: 432 -----QDG--ILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMD 484 +G ++ T F E E + LD + +E+ Sbjct: 352 EMSLEPNGAQKINTLLHMNQVRTSSNLTAFECIIKFNEEEDEKPLLDTIKDMGLNEQ--- 408 Query: 485 YFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544 + + + L + + + G GG+GK+ L +LI A N ++ Sbjct: 409 HLKKVLCTILTKQSGKRGCVWFYGPGGTGKTLLASLICKAVVNYGMVTT----------- 457 Query: 545 EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604 N I+ E K +TGG + S Sbjct: 458 --SNPNFPWTDCGNRNIIWAEECGNIGNYVED-FKAITGGGDVKVDTKNKQPQS---IKG 511 Query: 605 TPFIVPN 611 + + N Sbjct: 512 SVIVTSN 518 >gi|14475581|emb|CAC17714.2| putative E1 protein [Human papillomavirus type 87] Length = 626 Score = 43.3 bits (100), Expect = 0.18, Method: Composition-based stats. Identities = 23/178 (12%), Positives = 54/178 (30%), Gaps = 19/178 (10%) Query: 486 FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545 F + L G K + G +GKS + G + ++ Sbjct: 431 FMEALKHFLKGTPKKS-CLVFYGPSDTGKSMFCMSLLKYLGGAVISFVNST--------- 480 Query: 546 AGKANPSLIRLMGSRIVIISETNENDEI-NAAKIKQMTGGDCMTARLNYGNTYSESPASF 604 ++ L L+ ++I ++ + + + ++ + G+ M+ + + Sbjct: 481 ---SHFWLSPLVDTKIGLLDDATQQCWVYMDTYLRTVLDGNTMSIDRKHK--TLQQLKCP 535 Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA-NRDASFAQKLETKYTLEAK--KWF 659 I N ++ + R +V PF + + KL + W Sbjct: 536 PLMITTNVNIEADDSLKYLRSRMVVFPFLHKCPLDSNGDPVYKLNNENWKSFFQRSWA 593 >gi|13541532|ref|NP_111220.1| hypothetical protein TVN0701 [Thermoplasma volcanium GSS1] Length = 180 Score = 43.0 bits (99), Expect = 0.18, Method: Composition-based stats. Identities = 14/91 (15%), Positives = 29/91 (31%), Gaps = 4/91 (4%) Query: 78 ANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVA 137 + G P VR + + N + + + ++ G + +Y + Sbjct: 8 DEQSTEWARERFGPPNVRSVRGA---HWYFRNTKNLPNESNKQTAVGIFEFHTTNKYALI 64 Query: 138 YNIHPKTKKEYTWTTP-PHRFKVEDTPLLSE 167 + +Y W P P + D P L + Sbjct: 65 PPSDHPSGTKYEWEKPLPTIGDLPDAPDLRD 95 >gi|39938802|ref|NP_950568.1| ATP-dependent Zn protease [Onion yellows phytoplasma OY-M] gi|39721911|dbj|BAD04401.1| ATP-dependent Zn protease [Onion yellows phytoplasma OY-M] Length = 457 Score = 43.0 bits (99), Expect = 0.18, Method: Composition-based stats. Identities = 37/280 (13%), Positives = 82/280 (29%), Gaps = 40/280 (14%) Query: 356 MNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIF 415 + ++++ + L++ N K R+N E Sbjct: 160 LQTQENLQQQISHLNQALNYVEANQKRIEELKTQKEYRKNQTELKNLND--------FQL 211 Query: 416 SITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSG 475 +T L + Q + +L+ + + TK+ K + +E DL++ Sbjct: 212 FLTDQKLAFEKQKKNLQTQLNNLKENKPLPNTKKQVTFK---DVYGMESEKEELEDLLTY 268 Query: 476 YFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535 + ++ ++++ + + G G+GK+ L IK G V Sbjct: 269 FQTNQSLINFDQ-----------VRPKGYLLYGPPGTGKTFL---IKALCGEANVHFINL 314 Query: 536 SDIMQNRPPEAGKANPSL------IRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTA 589 + R G+ + I+ I E + N + ++ G Sbjct: 315 IP-SKFRQKYIGEGEKEVEKVWQEAENHDKTIIFIDEIEGLENRNDSN---ISSGGVNVI 370 Query: 590 RLN--YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627 + ++ S N + D A R+ Sbjct: 371 NTLLDKLDGFNSSNKKIVLMGATNNLHKI---DTALRSRF 407 >gi|302519881|ref|ZP_07272223.1| conserved hypothetical protein [Streptomyces sp. SPB78] gi|302428776|gb|EFL00592.1| conserved hypothetical protein [Streptomyces sp. SPB78] Length = 194 Score = 43.0 bits (99), Expect = 0.19, Method: Composition-based stats. Identities = 16/122 (13%), Positives = 32/122 (26%), Gaps = 14/122 (11%) Query: 28 KRPQRLGKWEEQLLSSEKIDKL-------PACGFGFVCGVGEQPLYAFDIDSKDEKTANT 80 K P + E G GFV + D+D + Sbjct: 56 KVPVAVDGTVASSTDPETWSTYRAASASAAGAGLGFVL--DGDGVVCLDLDHALDDQGAA 113 Query: 81 F---KDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVA 137 + + T + R + + + ++ T G +++ G G+Y Sbjct: 114 LPWAQRILDDAGPTWVERSVSGEGLHVW--GTGALPRGRRITVDGGGSVELYGDGRYIAV 171 Query: 138 YN 139 Sbjct: 172 TG 173 >gi|39938879|ref|NP_950645.1| ATP-dependent Zn protease [Onion yellows phytoplasma OY-M] gi|39721988|dbj|BAD04478.1| ATP-dependent Zn protease [Onion yellows phytoplasma OY-M] Length = 764 Score = 43.0 bits (99), Expect = 0.20, Method: Composition-based stats. Identities = 40/283 (14%), Positives = 84/283 (29%), Gaps = 36/283 (12%) Query: 351 ITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLE 410 + ++++ +F L++ N K R+N E K Sbjct: 155 KEKDQLQTQENLQQQIFQLNQALNYVEANQKRIEELKTQKEYRKNQTELKNFKD------ 208 Query: 411 AGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFL 470 +T L + L+ + + TK+ K + +E Sbjct: 209 --FQLFLTDQKLAFEKQKKNLTIQFNHLKENKSLPHTKKQVTFK---DVYGMETEKEELE 263 Query: 471 DLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530 DL++ + ++ ++++ + + G G+GK+ L IK G V Sbjct: 264 DLLTYFHTNQSLINFDQ-----------VRPKGYLLYGPPGTGKTFL---IKALCGEANV 309 Query: 531 INAEASDIMQNRPPEAGKANPSL------IRLMGSRIVIISETNENDEINAAKIKQMTGG 584 + R G+ + I+ I E + N + I G Sbjct: 310 HFINLIP-SKFRQKYIGEGEKEVDKVWQEAESHDKTIIFIDEIEGLENRNDSNI-SSGGV 367 Query: 585 DCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627 + + L+ + ++ S N + D A R+ Sbjct: 368 NVINTLLDKLDGFNSSNKKIVLMGATNNLHKI---DMALRSRF 407 >gi|183596365|ref|ZP_02958393.1| hypothetical protein PROSTU_00111 [Providencia stuartii ATCC 25827] gi|188023826|gb|EDU61866.1| hypothetical protein PROSTU_00111 [Providencia stuartii ATCC 25827] Length = 59 Score = 43.0 bits (99), Expect = 0.20, Method: Composition-based stats. Identities = 15/55 (27%), Positives = 21/55 (38%), Gaps = 1/55 (1%) Query: 584 GDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRN-PDDAWWRRYIVIPFDKPIA 637 GD + AR YG E + F+ I+ N + RR +IPF Sbjct: 1 GDIIVARQVYGKHEVEFQSQFSLVILGNHKHVIYEYVSTVCGRRMCLIPFAANFT 55 >gi|255690110|ref|ZP_05413785.1| primase C 2 family protein [Bacteroides finegoldii DSM 17565] gi|260624392|gb|EEX47263.1| primase C 2 family protein [Bacteroides finegoldii DSM 17565] Length = 625 Score = 43.0 bits (99), Expect = 0.20, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 35/85 (41%), Gaps = 3/85 (3%) Query: 187 DKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKG 246 S PS + + + + + + G + NG +D W+ V A+ E + + +G Sbjct: 19 SNTSNTPSAYSNTSEDTRAKVERVLSLIEQKGIDITNG-YDNWLKVGFALTSEFQEAGRG 77 Query: 247 KEIARRWSKQGSTYDEENFNYKWDT 271 R S+Q Y + + +++ Sbjct: 78 F--FHRVSRQNPEYKASDTDKQYNK 100 >gi|124514921|gb|EAY56432.1| putative Virulence-associated E [Leptospirillum rubarum] Length = 698 Score = 43.0 bits (99), Expect = 0.21, Method: Composition-based stats. Identities = 39/233 (16%), Positives = 68/233 (29%), Gaps = 43/233 (18%) Query: 489 CVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGK 548 V G K + + G G KS + ++ FG+ D Sbjct: 410 AVARIYDPGAKLDTMVILEGDQGVRKS---SSLQTLFGD---------DWTAEMKATPDN 457 Query: 549 ANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFI 608 + L+G V ++ + +IK RL Y + P Sbjct: 458 RDFE-ASLLGLWCVEFADLEGMGRADRNRIKMQLSTRADWIRLAYRRDPARYPRQSIFVS 516 Query: 609 VPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYIS 668 N + ++++P RR+ + K LE + W + V Y Sbjct: 517 TANDNDYLKDPTGG--RRFWPVRCGK----------IDLEALARDRGQLWA-EAVHRYQG 563 Query: 669 KGLDVDIPEVCLKAKEEERQGTDT----YQAW------------IDDCCDIGE 705 ++PE +E R +D+ W + DC +I E Sbjct: 564 GESWWEVPEQAKDEQEA-RYQSDSWEEIIAPWLAGRSEVTTTEILRDCLEILE 615 >gi|170581732|ref|XP_001895811.1| 26S protease regulatory subunit 8 [Brugia malayi] gi|158597104|gb|EDP35330.1| 26S protease regulatory subunit 8, putative [Brugia malayi] Length = 349 Score = 43.0 bits (99), Expect = 0.21, Method: Composition-based stats. Identities = 50/289 (17%), Positives = 91/289 (31%), Gaps = 24/289 (8%) Query: 379 NSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGI-LD 437 + + Y + + K K + G +D +S G + + D Sbjct: 3 KEELQQLHEQGSYVGEVSKAMDKKKVLVKVHPEGKYVVDLDKGIDINSITSGCRVALRAD 62 Query: 438 LETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVG 491 KV P K + V + L E +EV++ +G Sbjct: 63 SYALHKVLPNKIDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFDALG 122 Query: 492 MALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANP 551 +A + + + G G+GK+ L + + I S+++Q E + Sbjct: 123 IA------QPKGVLLYGPPGTGKTLLARAVAH-HTECTFIRVSGSELVQKFIGEGARMVR 175 Query: 552 SLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPF 607 L + I +E D I +++++ +GGD R L E+ + Sbjct: 176 ELFVMAREHAPSIIFMDEIDSIGSSRVEGSSGGDSEVQRTMLELLNQLDGFEATKNIKVI 235 Query: 608 IVPNKHLFVRNPDDAWWR--RY-IVIPFDKPIANRDASFAQKLETKYTL 653 + N+ + D A R R I F P A + K L Sbjct: 236 MATNRIDIL---DPALLRPGRIDRKIEFPAPDEKARADILKIHSRKMNL 281 >gi|281353352|gb|EFB28936.1| hypothetical protein PANDA_012053 [Ailuropoda melanoleuca] Length = 1365 Score = 43.0 bits (99), Expect = 0.22, Method: Composition-based stats. Identities = 16/83 (19%), Positives = 28/83 (33%), Gaps = 8/83 (9%) Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754 +WI + + + Y Y + N +S +K +K Sbjct: 13 SWIRNTLEEHPETSLPKQEVYDEYKSYCD---NLGYHPLSAADFGKIMKN--VFPNMKAR 67 Query: 755 KIEKEWKSKRII--KGLKLKPAF 775 ++ KSK + GL+ K AF Sbjct: 68 RLGTRGKSKYPLPKCGLR-KKAF 89 >gi|256397870|ref|YP_003119434.1| Bifunctional DNA primase/polymerase [Catenulispora acidiphila DSM 44928] gi|256364096|gb|ACU77593.1| Bifunctional DNA primase/polymerase [Catenulispora acidiphila DSM 44928] Length = 223 Score = 43.0 bits (99), Expect = 0.22, Method: Composition-based stats. Identities = 23/144 (15%), Positives = 40/144 (27%), Gaps = 23/144 (15%) Query: 30 PQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILH 89 P R+ W ++ P G + ID ++ + Sbjct: 83 PSRVHSW---------WEEHPDSAILLPTGR----TFDV-IDVPEQAGCLALARL--ERN 126 Query: 90 GTPIVRIGQKPKILIPFRMNKEGIKKKK----TTESTQGHLDILGCG--QYFVAYNIHPK 143 G + + P + F + KK + LD++ G + VA Sbjct: 127 GAALGPVAATPTRRLYFFVLPGTKKKIPEMLVRAGWGRAQLDLICHGEKGFVVAPPSRMG 186 Query: 144 TKKEYTWTTPPHRFKVEDTPLLSE 167 T + W PP P +E Sbjct: 187 TGGQVQWARPPGESN-RWLPEAAE 209 >gi|2661071|gb|AAB88187.1| similar to 26S proteasome subunit p45 [Homo sapiens] Length = 280 Score = 43.0 bits (99), Expect = 0.22, Method: Composition-based stats. Identities = 38/211 (18%), Positives = 71/211 (33%), Gaps = 25/211 (11%) Query: 447 TKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKA 500 K + V + L E +EV++ +G+A Sbjct: 3 NKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIA------Q 56 Query: 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSR 560 + + + G G+GK+ L + + + I S+++Q E + L + Sbjct: 57 PKGVLLYGPPGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGARMVRELFVMAREH 115 Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLFV 616 I +E D I +++++ +GGD R L E+ + + N+ + Sbjct: 116 APSIIFMDEIDSIGSSRLEGGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL 175 Query: 617 RNPDDAWWR--RY-IVIPFDKPIANRDASFA 644 D A R R I F P N +A Sbjct: 176 ---DSALLRPGRIDRKIEF--PPPNEEARLD 201 >gi|113460572|ref|YP_718636.1| phage DNA-polymerase or DNA-primase [Haemophilus somnus 129PT] gi|112822615|gb|ABI24704.1| possible phage DNA-polymerase or DNA-primase [Haemophilus somnus 129PT] Length = 303 Score = 43.0 bits (99), Expect = 0.23, Method: Composition-based stats. Identities = 17/123 (13%), Positives = 35/123 (28%), Gaps = 10/123 (8%) Query: 17 GFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEK 76 + P+ L K +W + + + + G F+ + P D+D+ E Sbjct: 38 KIPVSPITLSSKEWNLREQWGDFETAIDGLQNSGCDGLSFIL-TKDDPFICIDLDNVSED 96 Query: 77 TANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFV 136 D + I Q + L F KK + +++ + Sbjct: 97 KKTFIDDF-----SNTYIEISQSGRGLHIFAKGS----IKKNFNNQIEKVEMYHENKCIA 147 Query: 137 AYN 139 Sbjct: 148 MTG 150 >gi|167518113|ref|XP_001743397.1| hypothetical protein [Monosiga brevicollis MX1] gi|163778496|gb|EDQ92111.1| predicted protein [Monosiga brevicollis MX1] Length = 994 Score = 43.0 bits (99), Expect = 0.23, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 35/83 (42%), Gaps = 6/83 (7%) Query: 691 DTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGG 750 D WI + ++ E SL ++Y ++ E ++ + ++Q+ Sbjct: 390 DIVA-WIHEHYELKEAACVLRSSLYENYVKFCE---LTSQEPTNAANFGKIIRQQ--FPQ 443 Query: 751 IKREKIEKEWKSKRIIKGLKLKP 773 +K ++ +SK GL+LKP Sbjct: 444 LKTRRLGTRGQSKYHYYGLRLKP 466 >gi|325578833|ref|ZP_08148880.1| serine/threonine protein phosphatase family protein [Haemophilus parainfluenzae ATCC 33392] gi|325159657|gb|EGC71789.1| serine/threonine protein phosphatase family protein [Haemophilus parainfluenzae ATCC 33392] Length = 685 Score = 43.0 bits (99), Expect = 0.24, Method: Composition-based stats. Identities = 42/257 (16%), Positives = 79/257 (30%), Gaps = 41/257 (15%) Query: 403 KSTAQSLEAGSIFSITSDLLDSSSRFLGEQDG-----ILDLETGQKVKPTKELYITKSTG 457 K+ S L+D + R G QD LD + + + T Sbjct: 148 KNEILSALKKGSKLDAYGLIDRNYRLDGVQDYLAWGETLDFDEFVTQPLNEYALLKSCTE 207 Query: 458 TPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTL 517 P V +F ++G E ++ Y + + ++ + I GV G+GK+ Sbjct: 208 IPQVPSLQLDDF-AHIAGM--KEMMLTYLQQALK-----HHQKGVNLLIYGVPGTGKTEF 259 Query: 518 MNLIKYAFG--NQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA 575 L+ A G + ++ + + + L G + ++I + E D N Sbjct: 260 AGLLAQALGISAYNITYMDSDGDIVKAEQRLNYSRLAQTLLNGKQALLIFDEIE-DVFNG 318 Query: 576 AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFV------RNPDDAWWRRYIV 629 + +++ A + N + + D A+ RR Sbjct: 319 SLMERSVAQKN--------------KAWTNQLLENNNVPIIWLSNSVNSIDAAFLRR--- 361 Query: 630 IPFDKPIANRDASFAQK 646 FD D K Sbjct: 362 --FDFVFEMPDLPLKNK 376 >gi|326437514|gb|EGD83084.1| hypothetical protein PTSG_12063 [Salpingoeca sp. ATCC 50818] Length = 942 Score = 43.0 bits (99), Expect = 0.24, Method: Composition-based stats. Identities = 15/87 (17%), Positives = 32/87 (36%), Gaps = 6/87 (6%) Query: 687 RQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKG 746 R DT W+ ++ E + K+Y + ++ + + +G Sbjct: 290 RIDEDTVT-WLRANFELKTGFTVERRLVYKAY---CRHMQSMMQEPCNAAGFGKVI--RG 343 Query: 747 FIGGIKREKIEKEWKSKRIIKGLKLKP 773 G+ ++ SK +GL++KP Sbjct: 344 VFPGVTSRRLGSRGHSKYHYEGLRIKP 370 >gi|296135617|ref|YP_003642859.1| Primase 2 [Thiomonas intermedia K12] gi|295795739|gb|ADG30529.1| Primase 2 [Thiomonas intermedia K12] Length = 751 Score = 43.0 bits (99), Expect = 0.24, Method: Composition-based stats. Identities = 18/97 (18%), Positives = 26/97 (26%), Gaps = 13/97 (13%) Query: 206 TNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTY-DEEN 264 A L + W MA + E WS G Y ++ Sbjct: 6 DTERARAALQAIPPDLPRED---WTRAGMAAK----AAGLALEDFTDWSANGGNYAGPKD 58 Query: 265 FNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKG 301 W +F + IG T L + HG + Sbjct: 59 CASVWQSFKGDGIG-----PGTLFHLAFSHGWKDTRK 90 >gi|58581308|ref|YP_200324.1| hypothetical protein XOO1685 [Xanthomonas oryzae pv. oryzae KACC10331] gi|58425902|gb|AAW74939.1| phage-related protein [Xanthomonas oryzae pv. oryzae KACC10331] Length = 898 Score = 43.0 bits (99), Expect = 0.24, Method: Composition-based stats. Identities = 35/180 (19%), Positives = 70/180 (38%), Gaps = 22/180 (12%) Query: 468 EFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIH----IRGVGGSGKSTLMNLIKY 523 ++L + F + ++ T G +A G G+GK+TL+ + Sbjct: 523 DWLPWLWQCFGTHGMVA-MTFWFGSLFAEQIRAGHKSFPFLEATGEAGAGKTTLLTFLWK 581 Query: 524 AFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVII----SETNE--NDEINAAK 577 G ++ + +AG+A ++ ++ G +V++ SE ++ + + Sbjct: 582 LLGR-----SDYEGFDPAKSSKAGRAR-AMGQVSGMPVVLLEADRSEPDKAHSKTFEWDE 635 Query: 578 IKQMTGGDCMTAR--LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP 635 +K GG + R N GN E P T I N + + +A R + + F +P Sbjct: 636 LKDFFGGGTLATRGVRNGGNETYEPPFRGTIVITQNAAV---DASEAILTRIVKLHFKRP 692 >gi|84623236|ref|YP_450608.1| hypothetical protein XOO_1579 [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|84367176|dbj|BAE68334.1| phage-related protein [Xanthomonas oryzae pv. oryzae MAFF 311018] Length = 898 Score = 42.6 bits (98), Expect = 0.24, Method: Composition-based stats. Identities = 35/180 (19%), Positives = 70/180 (38%), Gaps = 22/180 (12%) Query: 468 EFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIH----IRGVGGSGKSTLMNLIKY 523 ++L + F + ++ T G +A G G+GK+TL+ + Sbjct: 523 DWLPWLWQCFGTHGMVA-MTFWFGSLFAEQIRAGHKSFPFLEATGEAGAGKTTLLTFLWK 581 Query: 524 AFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVII----SETNE--NDEINAAK 577 G ++ + +AG+A ++ ++ G +V++ SE ++ + + Sbjct: 582 LLGR-----SDYEGFDPAKSSKAGRAR-AMGQVSGMPVVLLEADRSEPDKAHSKTFEWDE 635 Query: 578 IKQMTGGDCMTAR--LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKP 635 +K GG + R N GN E P T I N + + +A R + + F +P Sbjct: 636 LKDFFGGGTLATRGVRNGGNETYEPPFRGTIVITQNAAV---DASEAILTRIVKLHFKRP 692 >gi|220930420|ref|YP_002507329.1| virulence-associated E family protein [Clostridium cellulolyticum H10] gi|220000748|gb|ACL77349.1| virulence-associated E family protein [Clostridium cellulolyticum H10] Length = 789 Score = 42.6 bits (98), Expect = 0.24, Method: Composition-based stats. Identities = 33/183 (18%), Positives = 57/183 (31%), Gaps = 18/183 (9%) Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542 V G K + + G G+GKS+L+ + + + + Sbjct: 500 RKMLIAAVKRLYEPGCKFDYMLVLVGPQGAGKSSLLAKLGRKW-----FSDSLRNFENKE 554 Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602 E L G+ I + E + + ++K R+ Y SE P Sbjct: 555 AGE---------HLQGAWIFELGELSAMKKSELEEVKAFLSKTEDRYRVAYDRQVSEFPR 605 Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKG 662 F N H F+++P RR+ + D R L+ + + L Sbjct: 606 KCIFFGTTNNHNFLQDPTG--NRRFWPV--DVDPDKRKLDHWDYLKDEEIGQIWAEALTL 661 Query: 663 VKA 665 KA Sbjct: 662 YKA 664 >gi|325926124|ref|ZP_08187485.1| hypothetical protein XPE_1449 [Xanthomonas perforans 91-118] gi|325543469|gb|EGD14891.1| hypothetical protein XPE_1449 [Xanthomonas perforans 91-118] Length = 871 Score = 42.6 bits (98), Expect = 0.25, Method: Composition-based stats. Identities = 35/190 (18%), Positives = 70/190 (36%), Gaps = 22/190 (11%) Query: 458 TPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIH----IRGVGGSG 513 ++L + F + ++ T G +A G G+G Sbjct: 486 IQRDADAFRADWLPWLWQCFGTHGMVA-MTFWFGSLFAEQIRAGHKSFPFLEATGEAGAG 544 Query: 514 KSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVII----SETNE 569 K+TL+ + G ++ + +AG+A ++ ++ G +V++ SE ++ Sbjct: 545 KTTLLTFLWKLLGR-----SDYEGFDPAKSSKAGRAR-AMGQVSGMPVVLLEADRSEPDK 598 Query: 570 --NDEINAAKIKQMTGGDCMTAR--LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625 + ++K GG + R N GN E P T I N + + +A Sbjct: 599 AHSKTFEWDELKDFFGGGTLATRGVRNGGNETYEPPFRGTIVITQNAAV---DASEAILT 655 Query: 626 RYIVIPFDKP 635 R + + F +P Sbjct: 656 RIVKLHFKRP 665 >gi|293400003|ref|ZP_06644149.1| putative virulence-associated protein E [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306403|gb|EFE47646.1| putative virulence-associated protein E [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 792 Score = 42.6 bits (98), Expect = 0.26, Method: Composition-based stats. Identities = 42/204 (20%), Positives = 68/204 (33%), Gaps = 18/204 (8%) Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542 FT V + G K + G G GKS I G+ + + I Sbjct: 500 RKAFTAAVARIFMPGCKYDYMPVLVGKQGIGKS----HILSVMGD-VWFSDSITTISGKE 554 Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602 EA L GS IV ++E + IKQ R Y S++P Sbjct: 555 GYEA---------LHGSWIVEMAELTATRKQEVESIKQFISKREDRYRKAYARRVSDNPR 605 Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKG 662 F N + F+R+ RR+ + D R S L + + + Sbjct: 606 QCVFFGTTNDNEFLRDYTG--NRRFWPVDTDA--DKRTKSIFHDLTCEIRDQLWAEAVMR 661 Query: 663 VKAYISKGLDVDIPEVCLKAKEEE 686 K++ L+ + + L+ +E+ Sbjct: 662 FKSHEPLFLESKLEQEALEMQEKY 685 >gi|154337848|ref|XP_001565150.1| hypothetical protein [Leishmania braziliensis MHOM/BR/75/M2904] gi|134062197|emb|CAM36585.1| putative mitochondrial DNA primase [Leishmania braziliensis MHOM/BR/75/M2904] Length = 534 Score = 42.6 bits (98), Expect = 0.26, Method: Composition-based stats. Identities = 15/116 (12%), Positives = 32/116 (27%), Gaps = 12/116 (10%) Query: 187 DKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAV---------- 236 D P + E + E G WI + + Sbjct: 352 DSNEGTPLPPQVLLPRTEKEAIESASRWLRQATEVEVGEWRTWIGLGLCAFRVAYHFRNA 411 Query: 237 HHETRGS-SKGKEIARRWSKQGS-TYDEENFNYKWDTFDFEEIGDTAKKRSTFTSL 290 + R + ++ + S++ + +W F+ E +G A + + L Sbjct: 412 KNLPRPAMAEMLDAWTEASRKCPLKFHNGECEARWAAFNPERLGHNADWWTAYKRL 467 >gi|260777438|ref|ZP_05886332.1| MoxR-like ATPase [Vibrio coralliilyticus ATCC BAA-450] gi|260607104|gb|EEX33378.1| MoxR-like ATPase [Vibrio coralliilyticus ATCC BAA-450] Length = 554 Score = 42.6 bits (98), Expect = 0.27, Method: Composition-based stats. Identities = 44/324 (13%), Positives = 94/324 (29%), Gaps = 40/324 (12%) Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540 E D C+ AL G + + G G KS + + AF N + + + Sbjct: 32 EREDTIKMCLLAALAGE-----SVFLLGPPGIAKSLIAKRLIQAFDN---SSYFEYLMTR 83 Query: 541 NRPPEAGKANPSLIRLM--GSRI---------VIISETNENDEINAAKIKQMTGGDCMTA 589 PE S+ L G + + +E + A + + + Sbjct: 84 FSTPEEVFGPLSIQELKDNGRYLRLTEGYLPTAQVVFLDEIWKAGPAILNTLL---TVVN 140 Query: 590 RLNYGNTY-SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDA------- 641 + N E N+ + +A + R +V F I N+ Sbjct: 141 EKTFKNGSDVERVPMRLLVSASNELPDEDSGLEALYDRMLVRIFVNRIQNKQNFKSMLTV 200 Query: 642 SFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDDCC 701 Q+ + L + + S+ +++ + + E ++ ++ Sbjct: 201 GTPQEAQIPEGLAITD---EEYHLWQSELEKLELSDEVFEKLYELKEM-------LEQSA 250 Query: 702 DIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWK 761 G + + S +++ ++N + E Sbjct: 251 TEGMGVDVSDTDMYVSDRRWKKAVKLLKASAYFNGRDSVNPLDLLLLQDCLWNSPESREV 310 Query: 762 SKRIIKGLKLKPAFESVDDNSNII 785 +R++K LK AF+ + I Sbjct: 311 VQRVVKEFALKQAFDQQEVEQQIS 334 >gi|186686101|ref|YP_001869297.1| virulence-associated E family protein [Nostoc punctiforme PCC 73102] gi|186468553|gb|ACC84354.1| virulence-associated E family protein [Nostoc punctiforme PCC 73102] Length = 761 Score = 42.6 bits (98), Expect = 0.27, Method: Composition-based stats. Identities = 29/210 (13%), Positives = 50/210 (23%), Gaps = 28/210 (13%) Query: 482 VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQN 541 V+ + V A G I G G GKS +G Y Sbjct: 467 VLRFLIASVARAYDPGCYLDNVILFYGEQGLGKSKFFE---DLYGKDYYATLPNET---- 519 Query: 542 RPPEAGKANPSLIRLMGSRIVIISETNE-NDEINAAKIKQMTGGDCMTARLNYGNTYSES 600 N + I E + + + A+IK R Y + Sbjct: 520 ------GDNDIVAACKSVWCGEIGEWERFSSKKSQAEIKTFITKPKDVMRKYYTQSSINI 573 Query: 601 PASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFL 660 F F N +++ RRY V + K + Sbjct: 574 LRRFVLFGTTNHKDILKDTTG--NRRYWVC-------EITKELDRDWVAKNRDFIWAEAI 624 Query: 661 KGVKAYISKGLDVDIPEVCLKAKEEERQGT 690 + + ++ E + ++ Sbjct: 625 AAYRN--KEKWWLNKTE---ELAQKYHNEN 649 >gi|186474383|ref|YP_001863354.1| ATPase central domain-containing protein [Burkholderia phymatum STM815] gi|184198342|gb|ACC76304.1| AAA ATPase central domain protein [Burkholderia phymatum STM815] Length = 355 Score = 42.6 bits (98), Expect = 0.28, Method: Composition-based stats. Identities = 34/210 (16%), Positives = 65/210 (30%), Gaps = 27/210 (12%) Query: 476 YFESEEVMDYFTRCVGMA------LLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529 F E F + A + G ++ + + G G+GK+ L I G ++ Sbjct: 71 IFLDELGRSAFEAFLADATHFDKLVAQGIASRLALMLSGPPGTGKTLLAGHIAAHLGRKF 130 Query: 530 VINAEASDIMQNRPPEAGKANPSLIRLMGSRIVII-----SETNENDEINA-AKIKQMTG 583 + S I A + G V+ + D+ N ++K++ Sbjct: 131 YVVRLDSVISSLLGDTAKNIRSIFDFVAGKNAVLFLDELDAIAKMRDDRNELGELKRVVN 190 Query: 584 GDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASF 643 S N + D A WRR+ P+ + Sbjct: 191 TVI--------QGIDSLEPSAIVIAATNHAQML---DTAIWRRF---PYKISFGAPEYDL 236 Query: 644 AQKLETKYTLEAKKWFLKG-VKAYISKGLD 672 Q L + + + + + A +S+GL+ Sbjct: 237 RQALWFHFLGDDPAYEVASRMLALLSEGLN 266 >gi|452598|emb|CAA54355.1| NS-1 [Aleutian mink disease virus] Length = 641 Score = 42.6 bits (98), Expect = 0.28, Method: Composition-based stats. Identities = 27/160 (16%), Positives = 43/160 (26%), Gaps = 19/160 (11%) Query: 458 TPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTL 517 F E E + L + +E+ Y + + L + I G GG+GK+ L Sbjct: 385 IKFNEEEDDKPLLATIKDMGLNEQ---YLKKVLCTILTKQGGKRGCIWFYGPGGTGKTLL 441 Query: 518 MNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK 577 +LI A N ++ N I+ E Sbjct: 442 ASLICKATVNYGMVTT-------------SNPNFPWTDCGNRNIIWAEECGNLGNWVED- 487 Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVR 617 K +TGG + +S V Sbjct: 488 FKAITGGGDVKVDTKNKQP--QSIKGCVIVTSNTNITKVT 525 >gi|107027183|ref|YP_624694.1| hypothetical protein Bcen_4842 [Burkholderia cenocepacia AU 1054] gi|105896557|gb|ABF79721.1| conserved hypothetical protein [Burkholderia cenocepacia AU 1054] Length = 615 Score = 42.6 bits (98), Expect = 0.29, Method: Composition-based stats. Identities = 10/55 (18%), Positives = 17/55 (30%), Gaps = 2/55 (3%) Query: 217 FGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDT 271 + W+ + AV H G E+ WS+ D + W + Sbjct: 15 ALATIPADDYTTWVDMAFAVKH--GLGEAGFELWDAWSQTAPNCDARSARATWRS 67 >gi|330015978|ref|ZP_08308366.1| ATPase, AAA family [Klebsiella sp. MS 92-3] gi|328529848|gb|EGF56739.1| ATPase, AAA family [Klebsiella sp. MS 92-3] Length = 394 Score = 42.6 bits (98), Expect = 0.29, Method: Composition-based stats. Identities = 21/144 (14%), Positives = 44/144 (30%), Gaps = 18/144 (12%) Query: 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMG 558 R G G GK+ + + I + + +L Sbjct: 145 SPTRSAIFVGPPGVGKTLTAAWLAKQLNVPFYILDLTAVMSSYLGKSGNNLRAALDYAKK 204 Query: 559 SRIVIISET------NENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612 V++ + +D+ + ++K++ E P + N Sbjct: 205 KPCVLLLDEIDSIAKKRSDDSDIGELKRLVT--------VILQEVDEWPTNSLLLAATNH 256 Query: 613 HLFVRNPDDAWWRRY-IVIPFDKP 635 + D A WRR+ +++ F+KP Sbjct: 257 EELI---DPALWRRFDMIVNFEKP 277 >gi|160889698|ref|ZP_02070701.1| hypothetical protein BACUNI_02125 [Bacteroides uniformis ATCC 8492] gi|156860690|gb|EDO54121.1| hypothetical protein BACUNI_02125 [Bacteroides uniformis ATCC 8492] Length = 506 Score = 42.6 bits (98), Expect = 0.29, Method: Composition-based stats. Identities = 27/187 (14%), Positives = 57/187 (30%), Gaps = 16/187 (8%) Query: 484 DYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA-FGNQYVINAEASDIMQNR 542 + + L + G G K+T M + + + + + + ++ Sbjct: 231 KWLVATIASLLDTKVVNHEILVFIGKQGIYKTTWMQRLLPVELQRYFYVKSNSRRVSKD- 289 Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602 L L +V + E E +++K +TG + R YG+ P Sbjct: 290 ---------DLFTLTEFALVCLEELEEMTSAQVSQLKAITGMTDVNERAAYGHFKESRPH 340 Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKG 662 + N F+ + RR+ +PF+ + + Y W G Sbjct: 341 IASFCGTSNNVTFLNDLSG--NRRW--LPFEVDSIDSPFDYPIDYARVYAQGYALWK-SG 395 Query: 663 VKAYISK 669 + + Sbjct: 396 FHYWFEQ 402 >gi|186681247|ref|YP_001864443.1| virulence-associated E family protein [Nostoc punctiforme PCC 73102] gi|186463699|gb|ACC79500.1| virulence-associated E family protein [Nostoc punctiforme PCC 73102] Length = 526 Score = 42.6 bits (98), Expect = 0.30, Method: Composition-based stats. Identities = 33/290 (11%), Positives = 76/290 (26%), Gaps = 39/290 (13%) Query: 385 FWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKV 444 F + ++ + + K + + + + + + +G ++++ G Sbjct: 139 FLKSRRRDFESRKGFNPMKEILEEYHKDFVKPVAMEEVATEDEEIGF----IEVKKGDIR 194 Query: 445 KPTKELYITKSTGTPFVEGEPSQEFLDLV---SGYFESEEVMDYFTRCVGMALLGGNKAQ 501 + ++ F E L+ S + + + A+ G K Sbjct: 195 RWDEQ---------VFTPFPQWDELSSLLFGTSDPLHQKMLEVFLIGAASRAVNPGKKLD 245 Query: 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRI 561 + ++ G K++ + G +V E + R + G L L G Sbjct: 246 TILVLKSDQGLAKTSFFRALG---GEYFVSIDEIESVETTRLLQKGWIG-ELGELEGIT- 300 Query: 562 VIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDD 621 + + +K + R F + Sbjct: 301 ---------SKADVNALKNWATKEEDPLRRMNTED-IPFRPRHIAFGGTCNSEEILKDTT 350 Query: 622 AWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGL 671 RR+ +IP K I ++ YI G+ Sbjct: 351 G-NRRFNIIPVTKEIP-------LDWFRQHRAHILAAAYHKYNEYIKAGI 392 >gi|72388950|ref|XP_844770.1| hypothetical protein [Trypanosoma brucei TREU927] gi|62176057|gb|AAX70178.1| hypothetical protein, conserved [Trypanosoma brucei] gi|70801304|gb|AAZ11211.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain 927/4 GUTat10.1] gi|261328017|emb|CBH10994.1| hypothetical protein, conserved [Trypanosoma brucei gambiense DAL972] Length = 335 Score = 42.6 bits (98), Expect = 0.30, Method: Composition-based stats. Identities = 25/200 (12%), Positives = 58/200 (29%), Gaps = 23/200 (11%) Query: 461 VEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALL------GGN--KAQRFIHIRGVGGS 512 + +E E+V V G + I + G G+ Sbjct: 68 EDVMDVEEINATFDDVGGLEDVKKALIEHVKWPFTRPELFEGNTLRSHPKGILLYGPPGT 127 Query: 513 GKSTLMNLIKYAFGNQYVINAEASDIMQ--NRPPEAGKANPSLIRLMGSRIVIISETNEN 570 GK+ + + G ++ S + + A +L + ++ + E + Sbjct: 128 GKTLIARALARELGCAFINVRTESLFSKWVGDTEKNAAAVFTLAAKLSPCVIFVDEIDAL 187 Query: 571 DEINAAKIKQMTGGDCMTARLNYG---NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627 + + A+ + + + + N+ L + D+A RR Sbjct: 188 LGLR----NSVDAAPHNNAKTIFMTHWDGVVQKKSKIVVIGATNRPLAI---DEAIRRRL 240 Query: 628 IVIPFDKPIANRDASFAQKL 647 P + D + +K+ Sbjct: 241 ---PLQLEVPPPDITGRRKI 257 >gi|123206408|ref|XP_001284920.1| hypothetical protein [Trichomonas vaginalis G3] gi|121847390|gb|EAX71990.1| conserved hypothetical protein [Trichomonas vaginalis G3] Length = 148 Score = 42.6 bits (98), Expect = 0.30, Method: Composition-based stats. Identities = 20/151 (13%), Positives = 44/151 (29%), Gaps = 12/151 (7%) Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637 +K + Y + + + N D RRY+V+ Sbjct: 2 LKSLITDKVGVVERKYKDQRVCENVANFIMVSNNAVPMKLESSD---RRYVVVR-TSDSH 57 Query: 638 NRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQA- 695 +D + L T + + IP + ++ + + Sbjct: 58 MQDTEYFDDLAETLTSDFYNHLFSYFMTLDISKFNPRQIP--HTEERQTLLEANKSVYEL 115 Query: 696 WIDDCCDIGENLWEESHSLAKSYSEYREQEL 726 +ID+ + + + SL SY +Y ++ Sbjct: 116 FIDE----TDFVSLDERSLYDSYKQYCQEYG 142 >gi|167580988|ref|ZP_02373862.1| virulence-associated E family protein [Burkholderia thailandensis TXDOH] Length = 838 Score = 42.6 bits (98), Expect = 0.30, Method: Composition-based stats. Identities = 28/184 (15%), Positives = 47/184 (25%), Gaps = 20/184 (10%) Query: 454 KSTGTPFVEGEPSQEFLDLVSGYFE---SEEVMDYFTRCVGMA----LLGGNKAQRFIHI 506 K + + + S + E L G + Sbjct: 506 KDAALALPQWDKTPRLDTFFSDFAGAPSDEATRLTGCLLFAGIIMRQLRPGAPCPVVPVL 565 Query: 507 RGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISE 566 G GG+GKS + + G A + + ++ L E Sbjct: 566 IGKGGTGKSRFVQQLAEVLGFP---PPPAISFSDDIRMTMAASVSAIAEL--------GE 614 Query: 567 TNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRR 626 + + + +K T R Y P F NKH R+ RR Sbjct: 615 MSGMAKRDMDDVKMWTTECQDVYRGPYERRAESHPRRFVLIGTANKHELNRDETG--NRR 672 Query: 627 YIVI 630 ++ I Sbjct: 673 FMPI 676 >gi|50547977|ref|XP_501458.1| YALI0C05038p [Yarrowia lipolytica] gi|49647325|emb|CAG81759.1| YALI0C05038p [Yarrowia lipolytica] Length = 626 Score = 42.6 bits (98), Expect = 0.30, Method: Composition-based stats. Identities = 22/118 (18%), Positives = 40/118 (33%), Gaps = 6/118 (5%) Query: 471 DLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530 + +E+M R V G I G G GK+TL ++ GN++V Sbjct: 132 QTLDDISGQKELMAVLRRFVAY---GRIP---SIIFWGPPGVGKTTLARILAKTSGNRFV 185 Query: 531 INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588 + + + + +AN L I+ I E + + + +T Sbjct: 186 ELSATQNNVADVKKVIDQANNEWKLLKRGTILFIDELHRFSKAQQDVLLPAVEKGDIT 243 >gi|218281359|ref|ZP_03487837.1| hypothetical protein EUBIFOR_00402 [Eubacterium biforme DSM 3989] gi|218217451|gb|EEC90989.1| hypothetical protein EUBIFOR_00402 [Eubacterium biforme DSM 3989] Length = 479 Score = 42.2 bits (97), Expect = 0.32, Method: Composition-based stats. Identities = 56/383 (14%), Positives = 115/383 (30%), Gaps = 29/383 (7%) Query: 104 IPFRMNKEGI--KKKKTTESTQGHLDILGCGQ--YFVAYNIHP--KTKKEYTWTTPPH-R 156 + +G ++ T G+++I G+ IH T K++ T + Sbjct: 87 YYYSDLPKGFQITQQFHPIGTNGYVEIDVDGKKKQIRIERIHMEEDTAKQFHKETGTYID 146 Query: 157 FKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKS---IIPSKTWTNNNNRQYTNREITAF 213 F TPL+ + + K + + R N ++ Sbjct: 147 FNRAGTPLIEIVSKPDMHSAKEAAAYVETLRKNLLYLNVSDVKMEEGSMRCDVNISLSKD 206 Query: 214 LSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDE----------E 263 G + + + V AV E S + + + YDE + Sbjct: 207 KDTLGTKTEIKNLNSIANVQKAVQAEIERQSALLDAGEKVEQATRRYDEAQKTTILMRKK 266 Query: 264 NFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLA----SRFSDAYNKAMFSIY 319 N + F I S+ + +L L S+ + S Sbjct: 267 EGNVDYKYFPEPNIFPIQLDLDWVKSIQDNLEELPDARLARFMKDYELSEYDASVLVSDR 326 Query: 320 KKGHFLYTADTKAWYKKDKNNVYIWS-LTLDKITASIMNFLVSMKEDVFDLSEEPEDNNK 378 + F + K N I + E++ L E Sbjct: 327 EMADFFEEVLKSTKFAKKACNWVIGDVSAYLNKNNLNFKNVPCSSENLASLINVIEAGEI 386 Query: 379 NSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFL-GEQDGI-- 435 + K + F + ++ ++ + K Q + G+I +I + +LD++ + + ++G Sbjct: 387 SGKQGKVVFEEVMQGKDPKKVIEEKGMKQVSDDGAILAIVNSVLDANPQSIEDFKNGKDR 446 Query: 436 -LDLETGQKVKPTKELYITKSTG 457 + GQ +K ++ K T Sbjct: 447 AVGFLVGQVMKASRGQANPKRTN 469 >gi|331090254|ref|ZP_08339141.1| hypothetical protein HMPREF1025_02724 [Lachnospiraceae bacterium 3_1_46FAA] gi|330401873|gb|EGG81448.1| hypothetical protein HMPREF1025_02724 [Lachnospiraceae bacterium 3_1_46FAA] Length = 797 Score = 42.2 bits (97), Expect = 0.33, Method: Composition-based stats. Identities = 37/262 (14%), Positives = 74/262 (28%), Gaps = 26/262 (9%) Query: 463 GEPSQEFLDLVSGYFESEEV-------MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKS 515 + L+ Y +E V G K + + G G GKS Sbjct: 462 WDGCSRIDSLLIDYMGAENTPYVRAVTRKTLVAAVARIYEPGIKFDSVLVLNGPQGCGKS 521 Query: 516 TLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA 575 T + Y + SD+ + +L G ++ + E +++ Sbjct: 522 TFFAKLGK---EWYSDSLTISDMKDGKTAAE--------KLQGYWLLELGELAGIKKVDV 570 Query: 576 AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKH-LFVRNPDDAWWRRYIVIPFDK 634 +K R +YG T P N F+R+ RR+ + Sbjct: 571 ETVKSFVTRTDDKYRQSYGTTVESHPRECVIVGSTNSEGGFLRDVTG--NRRF----WPV 624 Query: 635 PIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQ 694 + + L + + + K L A++E +D + Sbjct: 625 HVTGKGKHRGWDLTPETVDQIWAEAISIYKDGEELYLKGKEAAEAYVAQQE-AMESDERE 683 Query: 695 AWIDDCCDIGENLWEESHSLAK 716 ++D + ++ L + Sbjct: 684 GIVEDYLERLLPADWDTMDLYQ 705 >gi|193709132|ref|XP_001943740.1| PREDICTED: 26S protease regulatory subunit 8-like [Acyrthosiphon pisum] Length = 408 Score = 42.2 bits (97), Expect = 0.33, Method: Composition-based stats. Identities = 54/342 (15%), Positives = 104/342 (30%), Gaps = 40/342 (11%) Query: 328 ADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNK--------N 379 + + + D+N+ T I L+ + E +L N+ Sbjct: 3 PNPPEFMEVDQNSGSRGDGFKSYYTTKIEELLLVVAEKSMNLRRLQAQRNELNAKVRLLR 62 Query: 380 SKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLE 439 + Y + V+ K K + G +D + + + L Sbjct: 63 EELQLLQEQGSYVGEVVKPMDKKKVLVKVHPEGKFVVDIDKNIDINDV---TPNCRVALR 119 Query: 440 TGQKVKP----TKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRC 489 K + V + L + E +EV++ Sbjct: 120 NESYTLHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDTQIKEIKEVIELPVKHPELFDA 179 Query: 490 VGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKA 549 +G+A + + + G G+GK+ L + + I S+++Q E + Sbjct: 180 LGIA------QPKGVLLYGPPGTGKTLLARAVAH-HTECTFIRVSGSELVQKFIGEGSRM 232 Query: 550 NPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFT 605 L + I +E D I +++I+ +GGD R L E+ + Sbjct: 233 VRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIK 292 Query: 606 PFIVPNKHLFVRNPDDAWWR--RY-IVIPFDKPIANRDASFA 644 + N+ + D A R R I F P N +A + Sbjct: 293 VIMATNRIDIL---DTALLRPGRIDRKIEF--PPPNEEARWD 329 >gi|329723890|gb|EGG60417.1| Virulence-associated protein E [Staphylococcus epidermidis VCU144] Length = 495 Score = 42.2 bits (97), Expect = 0.33, Method: Composition-based stats. Identities = 52/365 (14%), Positives = 94/365 (25%), Gaps = 57/365 (15%) Query: 316 FSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPED 375 K L D Y + ++ S T + + E + + E + Sbjct: 1 MEDVTKEEVLELIDENN-YLANSDDWR--SKLRRSATTQALKKTTANAELIMENDESLKG 57 Query: 376 NNKNS--KSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQD 433 + + Y R N + N + I + Sbjct: 58 LVQYDSFEKITKLKRLPYWRTNDDNNYYWADIDTTHVISHIDRYYNVQFSRDIM------ 111 Query: 434 GILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEE-------VMDYF 486 ++ + + + + + ++ L Y +E+ + Sbjct: 112 -----DSVIEKEAYHNKFHPIKSMIESKTWDGNKRIETLFIDYLGAEDNHYNREVTKKWM 166 Query: 487 TRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEA 546 V G K I + G G GKST + G+ Y + + Sbjct: 167 MGAVARIYHPGIKYDSMIILYGGQGDGKSTT---VSKLGGHWYNQSLKTF---------- 213 Query: 547 GKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTP 606 K + S ++ GS + I E + IK R +YG P Sbjct: 214 -KGDESYKKIQGSWLCEIEELAAFQKSTIEDIKSFISAIVDIYRASYGKRIERHPRQCVF 272 Query: 607 FIVPNKHLFVRNPDDAWWRRYIVI----------PFD--------KPIANRDASFAQKLE 648 N + F+++ RR+ I PFD + A F Sbjct: 273 IGTTNNYEFLKDQTG--NRRFFPITTDKNKATKSPFDDLTQDIVQQMFAEAKVYFDDDPT 330 Query: 649 TKYTL 653 K L Sbjct: 331 DKALL 335 >gi|322819222|gb|EFZ26407.1| hypothetical protein TCSYLVIO_7416 [Trypanosoma cruzi] Length = 929 Score = 42.2 bits (97), Expect = 0.33, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 31/82 (37%), Gaps = 8/82 (9%) Query: 697 IDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKI 756 +D+C + + SL +++ + ++ + D + L G E Sbjct: 110 VDECLQMSPDA-TSLRSLYEAFVSFCKEYVLMDTTGMKNMPFYGEL-----NVGPGYEHY 163 Query: 757 EKEWKSKRIIKGLKLKPAFESV 778 ++ K KR L ++ FE V Sbjct: 164 DRRLKRKRHW--LAIRHRFEDV 183 >gi|300775982|ref|ZP_07085841.1| conserved hypothetical protein [Chryseobacterium gleum ATCC 35910] gi|300505115|gb|EFK36254.1| conserved hypothetical protein [Chryseobacterium gleum ATCC 35910] Length = 412 Score = 42.2 bits (97), Expect = 0.33, Method: Composition-based stats. Identities = 30/205 (14%), Positives = 67/205 (32%), Gaps = 20/205 (9%) Query: 459 PFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKA-QRFIHIRGVGGSGKSTL 517 P L + F E ++ + + L + + +GKST Sbjct: 91 PEDLENKIPFSLKFMEHIFG--EQLELGLDYIKILLEHPTQILPILCLVSKERATGKSTF 148 Query: 518 MNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK 577 + +K FG + I + ++ + + IV I E + + + Sbjct: 149 IKWLKSIFG------LNMTYIKGDSFSSQFNSDWTSM-----LIVAIDEVFFDKKEITER 197 Query: 578 IKQMTGGDCMTARLNYGN-TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI 636 +K ++ D + E F N+ F++ ++ R+ +I K I Sbjct: 198 LKYLSTTDKDKKEAKGKDREEVEFFGKFILC-SNNEDNFIQIDENEI--RFWIIK-VKSI 253 Query: 637 ANRDASFAQKLETKYTLEAKKWFLK 661 + + F + L K ++ ++ Sbjct: 254 KSENTEFLKNLN-KEIPYFLRYLIQ 277 >gi|39938812|ref|NP_950578.1| ATP-dependent Zn protease [Onion yellows phytoplasma OY-M] gi|39721921|dbj|BAD04411.1| ATP-dependent Zn protease [Onion yellows phytoplasma OY-M] Length = 516 Score = 42.2 bits (97), Expect = 0.33, Method: Composition-based stats. Identities = 38/278 (13%), Positives = 84/278 (30%), Gaps = 36/278 (12%) Query: 356 MNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIF 415 + ++++ + L++ N K R+N E Sbjct: 160 LQTQENLQQQISHLNQALNYVEANQKRIEELKTQKEYRKNQTELKNLND--------FQL 211 Query: 416 SITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSG 475 +T L + Q + +L+ + + TK+ K + +E DL++ Sbjct: 212 FLTDQKLAFEKQKKNLQTQLNNLKENKPLPNTKKQVTFK---DVYGMESEKEELEDLLTY 268 Query: 476 YFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535 + ++ ++++ + + G G+GK+ IK G V Sbjct: 269 FQTNQSLINFDQ-----------VRPKGYLLYGPPGTGKTFF---IKALCGETNVHFINL 314 Query: 536 SDIMQNRPPEAGKANPSL------IRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTA 589 + R G+ + I+ I E + N + I G + + Sbjct: 315 IP-SKFRQKYIGEGEKEVEKVWQEAENHDKTIIFIDEIEGLENRNDSNI-SSGGVNVINT 372 Query: 590 RLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627 L+ + ++ S N + D A R+ Sbjct: 373 LLDKLDGFNSSNKKIVLMGATNNLHKI---DSALRIRF 407 >gi|242064454|ref|XP_002453516.1| hypothetical protein SORBIDRAFT_04g007170 [Sorghum bicolor] gi|241933347|gb|EES06492.1| hypothetical protein SORBIDRAFT_04g007170 [Sorghum bicolor] Length = 422 Score = 42.2 bits (97), Expect = 0.34, Method: Composition-based stats. Identities = 45/317 (14%), Positives = 89/317 (28%), Gaps = 37/317 (11%) Query: 350 KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSL 409 I + ++ + N++ V E K ++ L Sbjct: 42 HIHDLQLQIRQKTHNLNRLEAQRNDLNSRVRMLREELQLLQEPGSYVGEVVKVMGKSKVL 101 Query: 410 EAGSIFSITSDLLDSSSRF--------LGEQDGILDLETGQKVKPTKELYITKSTGTPFV 461 LD S + ++ L K + + K P Sbjct: 102 VKVHPEGKYVVDLDKSIDITKITPSTRVALRNDSYMLHLILPSKVDPLVNLMKVEKVPDS 161 Query: 462 EGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGVGGSGKS 515 + + +EV++ +G+A + + + G G+GK+ Sbjct: 162 TYDMIGGLDQQIKEI---KEVIELPIKHPELFESLGIA------QPKGVLLYGPPGTGKT 212 Query: 516 TLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA 575 L + + + I S+++Q E + L + I +E D I + Sbjct: 213 LLARAVAH-HTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGS 271 Query: 576 AKIKQMTGGDCMTARL-----NYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR--RY- 627 A+++ TG + E+ + N+ + D A R R Sbjct: 272 ARMESGTGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDIL---DQALLRPGRID 328 Query: 628 IVIPFDKPIANRDASFA 644 I F N D+ F Sbjct: 329 RKIEFPN--PNEDSRFD 343 >gi|320352352|ref|YP_004193691.1| prophage antirepressor [Desulfobulbus propionicus DSM 2032] gi|320120854|gb|ADW16400.1| prophage antirepressor [Desulfobulbus propionicus DSM 2032] Length = 263 Score = 42.2 bits (97), Expect = 0.34, Method: Composition-based stats. Identities = 8/75 (10%), Positives = 25/75 (33%), Gaps = 2/75 (2%) Query: 692 TYQAWIDDCC--DIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIG 749 + +++DC + ++Y ++ ++R + L+ G+ Sbjct: 186 SLDGFLNDCTRAVPDPAPRLTLAEMHRAYRQWCLDHGLNQVNIATSRELAARLRDLGYTL 245 Query: 750 GIKREKIEKEWKSKR 764 +I+ + R Sbjct: 246 AKVGGRIQVFGLTVR 260 >gi|126461048|ref|YP_001042162.1| hypothetical protein Rsph17029_0272 [Rhodobacter sphaeroides ATCC 17029] gi|126102712|gb|ABN75390.1| hypothetical protein Rsph17029_0272 [Rhodobacter sphaeroides ATCC 17029] Length = 238 Score = 42.2 bits (97), Expect = 0.34, Method: Composition-based stats. Identities = 17/95 (17%), Positives = 33/95 (34%), Gaps = 3/95 (3%) Query: 690 TDTYQAWIDDCCDIG--ENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGF 747 +D + ++ + C + S +L ++ E+ Q D ++ L Sbjct: 116 SDCWAVFLRERCSCTGRDEDRLPSTALISAFREWLLQRGEGDCGPVTASKALAALVPIWR 175 Query: 748 IGGIKREKIEKEWKSKRIIKGLKLKPAFESVDDNS 782 R +++ +GL KPA S D S Sbjct: 176 CAETGRS-LDRHKAGTTYYRGLAFKPASTSDDGAS 209 >gi|332800348|ref|YP_004461847.1| virulence-associated E family protein [Tepidanaerobacter sp. Re1] gi|332698083|gb|AEE92540.1| virulence-associated E family protein [Tepidanaerobacter sp. Re1] Length = 801 Score = 42.2 bits (97), Expect = 0.35, Method: Composition-based stats. Identities = 34/178 (19%), Positives = 58/178 (32%), Gaps = 22/178 (12%) Query: 461 VEGEPSQEFLDLVSGYFESEE-------VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSG 513 + + + ++ Y +E+ V + G K + + G G G Sbjct: 477 PKWDGVERLDRILIDYLGAEDSEYVRAVTRKTLVAAVARVMEPGIKFDYMLVLNGPQGIG 536 Query: 514 KSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEI 573 KSTL N + G + + +D+ E +L G IV I E +I Sbjct: 537 KSTLFNRLG---GEWFSDSLSIADMRDKTAAE---------KLQGYWIVEIGELAGIKKI 584 Query: 574 NAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHL-FVRNPDDAWWRRYIVI 630 + +K R YG + P NK F+R+ RR+ + Sbjct: 585 DEETLKSFLSRQDDKYRAAYGYAVEDHPRQCIIVGSTNKTTGFLRDLTG--NRRFWPV 640 >gi|316972496|gb|EFV56173.1| 26S protease regulatory subunit 8 [Trichinella spiralis] Length = 349 Score = 42.2 bits (97), Expect = 0.35, Method: Composition-based stats. Identities = 36/212 (16%), Positives = 66/212 (31%), Gaps = 25/212 (11%) Query: 446 PTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNK 499 P K + V + L E +EV++ +G + Sbjct: 71 PNKVDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALG------IE 124 Query: 500 AQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGS 559 + + + G G+GK+ L + + I S+++Q E + L + Sbjct: 125 QPKGVLLYGPPGTGKTLLARAVAH-HTECTFIRVSGSELVQKFIGEGARMVRELFVMARE 183 Query: 560 RIVIISETNENDEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLF 615 I +E D I +++I +G D R L E+ + + N+ Sbjct: 184 HAPSIIFMDEIDSIGSSRIDSNSGSDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDI 243 Query: 616 VRNPDDAWWR--RY-IVIPFDKPIANRDASFA 644 + D A R R I F + A Sbjct: 244 L---DPALLRPGRIDRKIEFPA--PDEKARLD 270 >gi|158828259|gb|ABW81135.1| unknown [Capsella rubella] Length = 419 Score = 42.2 bits (97), Expect = 0.35, Method: Composition-based stats. Identities = 46/325 (14%), Positives = 94/325 (28%), Gaps = 39/325 (12%) Query: 355 IMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQ--------NVEENSKAKSTA 406 I +++ +L+ N+ + R Q V+ K K Sbjct: 40 IHEHQRQLRQKTNNLNRLEAQRNELNSRVRMLREELQLLQEPGSYVGEVVKVMGKNKVLV 99 Query: 407 QSLEAGSIFSITSDLLD----SSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVE 462 + G +D + S + ++ L K + + K P Sbjct: 100 KVHPEGKYVVDVDKSIDITKLTPSTRVALRNDSYVLHLVLPSKVDPLVNLMKVEKVPDST 159 Query: 463 GEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGVGGSGKST 516 + + +EV++ +G+A + + + G G+GK+ Sbjct: 160 YDMIGGLDQQIKEI---KEVIELPIKHPELFESLGIA------QPKGVLLYGPPGTGKTL 210 Query: 517 LMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAA 576 L + + + I S+++Q E + L + I +E D I +A Sbjct: 211 LARAVAH-HTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSA 269 Query: 577 KIKQMTGGDCMTARL-----NYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR--RY-I 628 +++ +G + E+ + N+ + D A R R Sbjct: 270 RMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDIL---DQALLRPGRIDR 326 Query: 629 VIPFDKPIANRDASFAQKLETKYTL 653 I F P + K L Sbjct: 327 KIEFPNPNEESRFDILKIHSRKMNL 351 >gi|39939213|ref|NP_950979.1| ATP-dependent Zn protease [Onion yellows phytoplasma OY-M] gi|39722322|dbj|BAD04812.1| ATP-dependent Zn protease [Onion yellows phytoplasma OY-M] Length = 457 Score = 42.2 bits (97), Expect = 0.36, Method: Composition-based stats. Identities = 39/278 (14%), Positives = 85/278 (30%), Gaps = 36/278 (12%) Query: 356 MNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIF 415 + ++++ +F L++ N K ++N E K Sbjct: 160 LQTQENLQQQIFQLNQALNYVEANQKRIEELKTQKEYQKNQTELKNFKD--------FQL 211 Query: 416 SITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSG 475 +T L + + L+ + + TK+ K + +E DL++ Sbjct: 212 FLTDQKLSFEKQKKNLTTQLNHLKENKPLPYTKKQVTFK---DVYGMESEKEELEDLLTY 268 Query: 476 YFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535 + ++ ++++ + + G G+GK+ L IK G V Sbjct: 269 FRTNQSLINFDQ-----------VRPKGYLLYGPPGTGKTFL---IKALCGEANVHFINL 314 Query: 536 SDIMQNRPPEAGKANPSL------IRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTA 589 + R G+ + I+ I E + N + I G + + Sbjct: 315 IP-SKFRQKYIGEGEKEVEKVWQEAENHDKTIIFIDEIEGLENRNDSNI-SSGGVNVINT 372 Query: 590 RLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627 L+ + ++ S N + D A R+ Sbjct: 373 LLDKLDGFNSSNKKIVLMGSTNNLHKI---DTALRSRF 407 >gi|242093492|ref|XP_002437236.1| hypothetical protein SORBIDRAFT_10g023320 [Sorghum bicolor] gi|241915459|gb|EER88603.1| hypothetical protein SORBIDRAFT_10g023320 [Sorghum bicolor] Length = 419 Score = 42.2 bits (97), Expect = 0.37, Method: Composition-based stats. Identities = 37/220 (16%), Positives = 70/220 (31%), Gaps = 26/220 (11%) Query: 429 LGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDY--- 485 + + G L K + + K P + + +EV++ Sbjct: 127 VALRSGSYMLHVILPSKVDPLVNLMKVEKVPNSTYDMIGGLDQQIKEI---KEVIELPIK 183 Query: 486 ---FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542 +G+A + + + G G+GK+ L + + + I S+++Q Sbjct: 184 HPELFESLGIA------QPKGVILYGPPGTGKTLLARAVAH-HTDCTFIRVSGSELVQKY 236 Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR----LNYGNTYS 598 E + L + I +E D I +A+++ GD R L Sbjct: 237 IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESSGSGDSEVQRTMLELLNQLDGF 296 Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWR--RY-IVIPFDKP 635 E+ + N+ + D A R R I F P Sbjct: 297 EATNKIKVLMATNRIDIL---DQALLRPGRIDRKIEFPNP 333 >gi|308048185|ref|YP_003911751.1| ATPase AAA [Ferrimonas balearica DSM 9799] gi|307630375|gb|ADN74677.1| AAA ATPase central domain protein [Ferrimonas balearica DSM 9799] Length = 324 Score = 42.2 bits (97), Expect = 0.37, Method: Composition-based stats. Identities = 30/250 (12%), Positives = 63/250 (25%), Gaps = 41/250 (16%) Query: 399 NSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGT 458 +S A I L D+ + + L S Sbjct: 23 KRVTESLIADERAKKHHVIAERLEDALRT-ISVSNATL-------RPRDYGFSKIASLVD 74 Query: 459 PFVEGEP------SQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGS 512 + + ++ + D +L N+ + + G G+ Sbjct: 75 ERHPAIKLSELVLNPSITESINELIAEQSRADLLR---SYSLEPRNR----LLLIGPPGN 127 Query: 513 GKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISET----- 567 GK+++ + A ++ I A + R V+ + Sbjct: 128 GKTSIAEALAEALMVPLIVVRYEGVIGSYLGETASNLKKVIEFASSRRCVLFFDEFDTLG 187 Query: 568 -NENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRR 626 D + ++K++ M P+ N + D A WRR Sbjct: 188 KERGDTHDTGEVKRVVSSLLMQIDSL--------PSHVVVVGATNHSELL---DRAVWRR 236 Query: 627 YIV---IPFD 633 + + +P Sbjct: 237 FQIRLEVPMP 246 >gi|315454005|ref|YP_004074275.1| hypothetical protein HFELIS_16010 [Helicobacter felis ATCC 49179] gi|315133057|emb|CBY83685.1| putative uncharacterized protein [Helicobacter felis ATCC 49179] Length = 542 Score = 42.2 bits (97), Expect = 0.39, Method: Composition-based stats. Identities = 27/218 (12%), Positives = 66/218 (30%), Gaps = 18/218 (8%) Query: 463 GEPSQEFLDLVSGYFE---SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLM- 518 G ++ +V D F + L + G+GK L Sbjct: 208 GAKFPFIAGVIDNVLGAKNDSKVRDKFLHDLAYHLETFTPCFNLWLLLDKQGTGKGVLTS 267 Query: 519 NLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKI 578 ++ + ++ + A + G A + RL + +++ ++ Sbjct: 268 QILMRLYSDEDNFSNVARLSGAEFTSKWGDA--FVNRLYLDIDEVEESLDKSGTTINQRV 325 Query: 579 KQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIP------- 631 K + +L + +T + + N+ + + D RRY ++ Sbjct: 326 KVIVANTRYAVQLKFRDTQ-QVENHAFIVMSSNEKMPFKI-DAGLNRRYNIVRGGGESLV 383 Query: 632 --FDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYI 667 F + AN D + ++ K ++ + + Sbjct: 384 EMFPQISANHDDWLNKTID-KEMPYFLQFLAQIPLDFK 420 >gi|39938852|ref|NP_950618.1| ATP-dependent Zn protease [Onion yellows phytoplasma OY-M] gi|39721961|dbj|BAD04451.1| ATP-dependent Zn protease [Onion yellows phytoplasma OY-M] Length = 516 Score = 42.2 bits (97), Expect = 0.39, Method: Composition-based stats. Identities = 38/278 (13%), Positives = 84/278 (30%), Gaps = 36/278 (12%) Query: 356 MNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIF 415 + ++++ + L++ N K R+N E Sbjct: 160 LQTQENLQQQISHLNQALNYVEANQKRIEELKTQKEYRKNQTELKNLND--------FQL 211 Query: 416 SITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSG 475 +T L + Q + +L+ + + TK+ K + +E DL++ Sbjct: 212 FLTDQKLAFEKQKKNLQTQLNNLKENKPLPNTKKQVTFK---DVYGMESEKEELEDLLTY 268 Query: 476 YFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535 + ++ ++++ + + G G+GK+ IK G V Sbjct: 269 FQTNQSLINFDQ-----------VRPKGYLLYGPPGTGKTFF---IKALCGETNVHFINL 314 Query: 536 SDIMQNRPPEAGKANPSL------IRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTA 589 + R G+ + I+ I E + N + I G + + Sbjct: 315 IP-SKFRQKYIGEGEKEVEKVWQEAENHDKTIIFIDEIEGLENRNDSNI-SSGGVNVINT 372 Query: 590 RLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627 L+ + ++ S N + D A R+ Sbjct: 373 LLDKLDGFNSSNKKIVLMGATNNLHKI---DSALRIRF 407 >gi|256078217|ref|XP_002575393.1| rfx5 [Schistosoma mansoni] gi|238660631|emb|CAZ31626.1| rfx5, putative [Schistosoma mansoni] Length = 1109 Score = 41.8 bits (96), Expect = 0.41, Method: Composition-based stats. Identities = 12/89 (13%), Positives = 29/89 (32%), Gaps = 5/89 (5%) Query: 689 GTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFI 748 WI + + + Y Y E+ K ++T +K+ Sbjct: 111 EQSQAYTWIMSHLEEDPSTCLRKDEVYDDYRAYCEKHHM---KTLNTADFGKVMKRA--F 165 Query: 749 GGIKREKIEKEWKSKRIIKGLKLKPAFES 777 +K ++ + +S+ G++ K + Sbjct: 166 PNVKPRRLGQRGQSRYCYGGMRKKTEIQP 194 >gi|151573956|gb|ABS18274.1| non-structural protein 1 [Feline panleukopenia virus] Length = 668 Score = 41.8 bits (96), Expect = 0.41, Method: Composition-based stats. Identities = 23/181 (12%), Positives = 46/181 (25%), Gaps = 28/181 (15%) Query: 489 CVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGK 548 + L + + G +GKS + I A G+ N A Sbjct: 381 AIACVLNRQGGKRNTVLFHGPASTGKSIIAQAIAQAVGDVGCYN-------------AAN 427 Query: 549 ANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFI 608 N ++ I E + + K + G + G + + + Sbjct: 428 VNFPFNDCTNKNLIWIEEAGNFGQ-QVNQFKAICSGQTIRIDQK-GKGSKQIEPT-PVIM 484 Query: 609 VPNKHLFV--------RNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFL 660 N+++ + R + I + D K + W + Sbjct: 485 TTNENITIVRIGCEERPEHTQPIRDRMLNIKLVCKLPG-DFGLVDK---EEWPLICAWLV 540 Query: 661 K 661 K Sbjct: 541 K 541 >gi|326912145|ref|XP_003202414.1| PREDICTED: transcription factor RFX4-like [Meleagris gallopavo] Length = 790 Score = 41.8 bits (96), Expect = 0.42, Method: Composition-based stats. Identities = 12/80 (15%), Positives = 34/80 (42%), Gaps = 5/80 (6%) Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754 W+++ +I E + +L Y ++ E+ D + ++ + ++Q+ + Sbjct: 118 QWLEENYEIAEGVCIPRSALYMHYLDFCEKN---DTQPVNAASFGKIIRQQ--FPQLTTR 172 Query: 755 KIEKEWKSKRIIKGLKLKPA 774 ++ +SK G+ +K Sbjct: 173 RLGTRGQSKYHYYGIAVKEN 192 >gi|224095383|ref|XP_002196607.1| PREDICTED: similar to winged-helix transcription factor RFX4 [Taeniopygia guttata] Length = 747 Score = 41.8 bits (96), Expect = 0.42, Method: Composition-based stats. Identities = 12/80 (15%), Positives = 34/80 (42%), Gaps = 5/80 (6%) Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754 W+++ +I E + +L Y ++ E+ D + ++ + ++Q+ + Sbjct: 75 QWLEENYEIAEGVCIPRSALYMHYLDFCEKN---DTQPVNAASFGKIIRQQ--FPQLTTR 129 Query: 755 KIEKEWKSKRIIKGLKLKPA 774 ++ +SK G+ +K Sbjct: 130 RLGTRGQSKYHYYGIAVKEN 149 >gi|118082811|ref|XP_416306.2| PREDICTED: similar to winged-helix transcription factor RFX4 [Gallus gallus] Length = 784 Score = 41.8 bits (96), Expect = 0.42, Method: Composition-based stats. Identities = 12/80 (15%), Positives = 34/80 (42%), Gaps = 5/80 (6%) Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754 W+++ +I E + +L Y ++ E+ D + ++ + ++Q+ + Sbjct: 112 QWLEENYEIAEGVCIPRSALYMHYLDFCEKN---DTQPVNAASFGKIIRQQ--FPQLTTR 166 Query: 755 KIEKEWKSKRIIKGLKLKPA 774 ++ +SK G+ +K Sbjct: 167 RLGTRGQSKYHYYGIAVKEN 186 >gi|52630927|gb|AAU84927.1| putative 26S protease regulatory subunit 8 [Toxoptera citricida] gi|326509375|dbj|BAJ91604.1| predicted protein [Hordeum vulgare subsp. vulgare] Length = 408 Score = 41.8 bits (96), Expect = 0.42, Method: Composition-based stats. Identities = 44/261 (16%), Positives = 83/261 (31%), Gaps = 31/261 (11%) Query: 400 SKAKSTAQSLEAGSIFSITS--DLLDSSSR-FLGEQDGILDLETGQKVKPTKELYITKST 456 K E + I D+ D + + ++ L K + + Sbjct: 84 KKKVLVKVHPEGKFVVDIDKNIDINDVTPNCRVALRNESYTLHKILPNKVDPLVSLMMVE 143 Query: 457 GTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGVG 510 P E + +EV++ +G+A + + + G Sbjct: 144 KVPDSTYEMVGGLDTQIKEI---KEVIELPVKHPELFDALGIA------QPKGVLLYGPP 194 Query: 511 GSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN 570 G+GK+ L + + I S+++Q E + L + I +E Sbjct: 195 GTGKTLLARAVAH-HTECTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEI 253 Query: 571 DEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR- 625 D I +++I+ +GGD R L E+ + + N+ + D A R Sbjct: 254 DSIGSSRIESGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DTALLRP 310 Query: 626 -RY-IVIPFDKPIANRDASFA 644 R I F P N +A + Sbjct: 311 GRIDRKIEF--PPPNEEARWD 329 >gi|332241694|ref|XP_003270013.1| PREDICTED: transcription factor RFX4 isoform 2 [Nomascus leucogenys] Length = 735 Score = 41.8 bits (96), Expect = 0.42, Method: Composition-based stats. Identities = 12/79 (15%), Positives = 34/79 (43%), Gaps = 5/79 (6%) Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754 W+++ +I E + +L Y ++ E+ D + ++ + ++Q+ + Sbjct: 63 QWLEENYEIAEGVCIPRSALYMHYLDFCEKN---DTQPVNAASFGKIIRQQ--FPQLTTR 117 Query: 755 KIEKEWKSKRIIKGLKLKP 773 ++ +SK G+ +K Sbjct: 118 RLGTRGQSKYHYYGIAVKE 136 >gi|327272328|ref|XP_003220937.1| PREDICTED: transcription factor RFX4-like [Anolis carolinensis] Length = 745 Score = 41.8 bits (96), Expect = 0.42, Method: Composition-based stats. Identities = 12/79 (15%), Positives = 34/79 (43%), Gaps = 5/79 (6%) Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754 W+++ +I E + +L Y ++ E+ D + ++ + ++Q+ + Sbjct: 74 QWLEENYEIAEGVCIPRSALYMHYLDFCEKN---DTQPVNAASFGKIIRQQ--FPQLTTR 128 Query: 755 KIEKEWKSKRIIKGLKLKP 773 ++ +SK G+ +K Sbjct: 129 RLGTRGQSKYHYYGIAVKE 147 >gi|311255209|ref|XP_003126131.1| PREDICTED: transcription factor RFX4-like [Sus scrofa] Length = 1346 Score = 41.8 bits (96), Expect = 0.42, Method: Composition-based stats. Identities = 12/79 (15%), Positives = 34/79 (43%), Gaps = 5/79 (6%) Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754 W+++ +I E + +L Y ++ E+ D + ++ + ++Q+ + Sbjct: 556 QWLEENYEIAEGVCIPRSALYMHYLDFCEKN---DTQPVNAASFGKIIRQQ--FPQLTTR 610 Query: 755 KIEKEWKSKRIIKGLKLKP 773 ++ +SK G+ +K Sbjct: 611 RLGTRGQSKYHYYGIAVKE 629 >gi|301784549|ref|XP_002927690.1| PREDICTED: transcription factor RFX4-like [Ailuropoda melanoleuca] Length = 750 Score = 41.8 bits (96), Expect = 0.42, Method: Composition-based stats. Identities = 12/79 (15%), Positives = 34/79 (43%), Gaps = 5/79 (6%) Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754 W+++ +I E + +L Y ++ E+ D + ++ + ++Q+ + Sbjct: 78 QWLEENYEIAEGVCIPRSALYMHYLDFCEKN---DTQPVNAASFGKIIRQQ--FPQLTTR 132 Query: 755 KIEKEWKSKRIIKGLKLKP 773 ++ +SK G+ +K Sbjct: 133 RLGTRGQSKYHYYGIAVKE 151 >gi|297692825|ref|XP_002823732.1| PREDICTED: transcription factor RFX4-like isoform 2 [Pongo abelii] Length = 735 Score = 41.8 bits (96), Expect = 0.42, Method: Composition-based stats. Identities = 12/79 (15%), Positives = 34/79 (43%), Gaps = 5/79 (6%) Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754 W+++ +I E + +L Y ++ E+ D + ++ + ++Q+ + Sbjct: 63 QWLEENYEIAEGVCIPRSALYMHYLDFCEKN---DTQPVNAASFGKIIRQQ--FPQLTTR 117 Query: 755 KIEKEWKSKRIIKGLKLKP 773 ++ +SK G+ +K Sbjct: 118 RLGTRGQSKYHYYGIAVKE 136 >gi|297692823|ref|XP_002823731.1| PREDICTED: transcription factor RFX4-like isoform 1 [Pongo abelii] Length = 744 Score = 41.8 bits (96), Expect = 0.42, Method: Composition-based stats. Identities = 12/79 (15%), Positives = 34/79 (43%), Gaps = 5/79 (6%) Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754 W+++ +I E + +L Y ++ E+ D + ++ + ++Q+ + Sbjct: 72 QWLEENYEIAEGVCIPRSALYMHYLDFCEKN---DTQPVNAASFGKIIRQQ--FPQLTTR 126 Query: 755 KIEKEWKSKRIIKGLKLKP 773 ++ +SK G+ +K Sbjct: 127 RLGTRGQSKYHYYGIAVKE 145 >gi|297263423|ref|XP_001100097.2| PREDICTED: transcription factor RFX4-like isoform 4 [Macaca mulatta] Length = 738 Score = 41.8 bits (96), Expect = 0.42, Method: Composition-based stats. Identities = 12/79 (15%), Positives = 34/79 (43%), Gaps = 5/79 (6%) Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754 W+++ +I E + +L Y ++ E+ D + ++ + ++Q+ + Sbjct: 63 QWLEENYEIAEGVCIPRSALYMHYLDFCEKN---DTQPVNAASFGKIIRQQ--FPQLTTR 117 Query: 755 KIEKEWKSKRIIKGLKLKP 773 ++ +SK G+ +K Sbjct: 118 RLGTRGQSKYHYYGIAVKE 136 >gi|297458480|ref|XP_613459.5| PREDICTED: regulatory factor X4 isoform 2 [Bos taurus] gi|297474990|ref|XP_002687707.1| PREDICTED: regulatory factor X, 4 (influences HLA class II expression) isoform 1 [Bos taurus] gi|296487428|gb|DAA29541.1| regulatory factor X, 4 (influences HLA class II expression) isoform 1 [Bos taurus] Length = 744 Score = 41.8 bits (96), Expect = 0.42, Method: Composition-based stats. Identities = 12/79 (15%), Positives = 34/79 (43%), Gaps = 5/79 (6%) Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754 W+++ +I E + +L Y ++ E+ D + ++ + ++Q+ + Sbjct: 72 QWLEENYEIAEGVCIPRSALYMHYLDFCEKN---DTQPVNAASFGKIIRQQ--FPQLTTR 126 Query: 755 KIEKEWKSKRIIKGLKLKP 773 ++ +SK G+ +K Sbjct: 127 RLGTRGQSKYHYYGIAVKE 145 >gi|293348538|ref|XP_002726934.1| PREDICTED: regulatory factor X4-like [Rattus norvegicus] Length = 652 Score = 41.8 bits (96), Expect = 0.42, Method: Composition-based stats. Identities = 12/79 (15%), Positives = 34/79 (43%), Gaps = 5/79 (6%) Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754 W+++ +I E + +L Y ++ E+ D + ++ + ++Q+ + Sbjct: 115 QWLEENYEIAEGVCIPRSALYMHYLDFCEKN---DTQPVNAASFGKIIRQQ--FPQLTTR 169 Query: 755 KIEKEWKSKRIIKGLKLKP 773 ++ +SK G+ +K Sbjct: 170 RLGTRGQSKYHYYGIAVKE 188 >gi|281338613|gb|EFB14197.1| hypothetical protein PANDA_017493 [Ailuropoda melanoleuca] Length = 721 Score = 41.8 bits (96), Expect = 0.42, Method: Composition-based stats. Identities = 12/79 (15%), Positives = 34/79 (43%), Gaps = 5/79 (6%) Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754 W+++ +I E + +L Y ++ E+ D + ++ + ++Q+ + Sbjct: 49 QWLEENYEIAEGVCIPRSALYMHYLDFCEKN---DTQPVNAASFGKIIRQQ--FPQLTTR 103 Query: 755 KIEKEWKSKRIIKGLKLKP 773 ++ +SK G+ +K Sbjct: 104 RLGTRGQSKYHYYGIAVKE 122 >gi|208965428|dbj|BAG72728.1| regulatory factor X, 4 [synthetic construct] Length = 705 Score = 41.8 bits (96), Expect = 0.42, Method: Composition-based stats. Identities = 12/79 (15%), Positives = 34/79 (43%), Gaps = 5/79 (6%) Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754 W+++ +I E + +L Y ++ E+ D + ++ + ++Q+ + Sbjct: 63 QWLEENYEIAEGVCIPRSALYMHYLDFCEKN---DTQPVNAASFGKIIRQQ--FPQLTTR 117 Query: 755 KIEKEWKSKRIIKGLKLKP 773 ++ +SK G+ +K Sbjct: 118 RLGTRGQSKYHYYGIAVKE 136 >gi|194226740|ref|XP_001499083.2| PREDICTED: regulatory factor X, 4 (influences HLA class II expression) [Equus caballus] Length = 734 Score = 41.8 bits (96), Expect = 0.42, Method: Composition-based stats. Identities = 12/79 (15%), Positives = 34/79 (43%), Gaps = 5/79 (6%) Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754 W+++ +I E + +L Y ++ E+ D + ++ + ++Q+ + Sbjct: 63 QWLEENYEIAEGVCIPRSALYMHYLDFCEKN---DTQPVNAASFGKIIRQQ--FPQLTTR 117 Query: 755 KIEKEWKSKRIIKGLKLKP 773 ++ +SK G+ +K Sbjct: 118 RLGTRGQSKYHYYGIAVKE 136 >gi|149637931|ref|XP_001508397.1| PREDICTED: similar to regulatory factor X4 [Ornithorhynchus anatinus] Length = 939 Score = 41.8 bits (96), Expect = 0.42, Method: Composition-based stats. Identities = 12/79 (15%), Positives = 34/79 (43%), Gaps = 5/79 (6%) Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754 W+++ +I E + +L Y ++ E+ D + ++ + ++Q+ + Sbjct: 266 QWLEENYEIAEGVCIPRSALYMHYLDFCEKN---DTQPVNAASFGKIIRQQ--FPQLTTR 320 Query: 755 KIEKEWKSKRIIKGLKLKP 773 ++ +SK G+ +K Sbjct: 321 RLGTRGQSKYHYYGIAVKE 339 >gi|149067365|gb|EDM17098.1| similar to regulatory factor X 4 variant (predicted), isoform CRA_a [Rattus norvegicus] Length = 460 Score = 41.8 bits (96), Expect = 0.42, Method: Composition-based stats. Identities = 12/79 (15%), Positives = 34/79 (43%), Gaps = 5/79 (6%) Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754 W+++ +I E + +L Y ++ E+ D + ++ + ++Q+ + Sbjct: 63 QWLEENYEIAEGVCIPRSALYMHYLDFCEKN---DTQPVNAASFGKIIRQQ--FPQLTTR 117 Query: 755 KIEKEWKSKRIIKGLKLKP 773 ++ +SK G+ +K Sbjct: 118 RLGTRGQSKYHYYGIAVKE 136 >gi|148689463|gb|EDL21410.1| regulatory factor X, 4 (influences HLA class II expression), isoform CRA_c [Mus musculus] Length = 808 Score = 41.8 bits (96), Expect = 0.42, Method: Composition-based stats. Identities = 12/79 (15%), Positives = 34/79 (43%), Gaps = 5/79 (6%) Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754 W+++ +I E + +L Y ++ E+ D + ++ + ++Q+ + Sbjct: 136 QWLEENYEIAEGVCIPRSALYMHYLDFCEKN---DTQPVNAASFGKIIRQQ--FPQLTTR 190 Query: 755 KIEKEWKSKRIIKGLKLKP 773 ++ +SK G+ +K Sbjct: 191 RLGTRGQSKYHYYGIAVKE 209 >gi|148689461|gb|EDL21408.1| regulatory factor X, 4 (influences HLA class II expression), isoform CRA_a [Mus musculus] Length = 693 Score = 41.8 bits (96), Expect = 0.42, Method: Composition-based stats. Identities = 12/79 (15%), Positives = 34/79 (43%), Gaps = 5/79 (6%) Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754 W+++ +I E + +L Y ++ E+ D + ++ + ++Q+ + Sbjct: 63 QWLEENYEIAEGVCIPRSALYMHYLDFCEKN---DTQPVNAASFGKIIRQQ--FPQLTTR 117 Query: 755 KIEKEWKSKRIIKGLKLKP 773 ++ +SK G+ +K Sbjct: 118 RLGTRGQSKYHYYGIAVKE 136 >gi|126339786|ref|XP_001374936.1| PREDICTED: similar to winged-helix transcription factor RFX4 [Monodelphis domestica] Length = 732 Score = 41.8 bits (96), Expect = 0.42, Method: Composition-based stats. Identities = 12/79 (15%), Positives = 34/79 (43%), Gaps = 5/79 (6%) Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754 W+++ +I E + +L Y ++ E+ D + ++ + ++Q+ + Sbjct: 60 QWLEENYEIAEGVCIPRSALYMHYLDFCEKN---DTQPVNAASFGKIIRQQ--FPQLTTR 114 Query: 755 KIEKEWKSKRIIKGLKLKP 773 ++ +SK G+ +K Sbjct: 115 RLGTRGQSKYHYYGIAVKE 133 >gi|331999966|ref|NP_001193620.1| transcription factor RFX4 isoform d [Homo sapiens] gi|114646709|ref|XP_509336.2| PREDICTED: transcription factor RFX4 isoform 6 [Pan troglodytes] Length = 744 Score = 41.8 bits (96), Expect = 0.42, Method: Composition-based stats. Identities = 12/79 (15%), Positives = 34/79 (43%), Gaps = 5/79 (6%) Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754 W+++ +I E + +L Y ++ E+ D + ++ + ++Q+ + Sbjct: 72 QWLEENYEIAEGVCIPRSALYMHYLDFCEKN---DTQPVNAASFGKIIRQQ--FPQLTTR 126 Query: 755 KIEKEWKSKRIIKGLKLKP 773 ++ +SK G+ +K Sbjct: 127 RLGTRGQSKYHYYGIAVKE 145 >gi|114646711|ref|XP_001161711.1| PREDICTED: transcription factor RFX4 isoform 2 [Pan troglodytes] Length = 596 Score = 41.8 bits (96), Expect = 0.42, Method: Composition-based stats. Identities = 12/79 (15%), Positives = 34/79 (43%), Gaps = 5/79 (6%) Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754 W+++ +I E + +L Y ++ E+ D + ++ + ++Q+ + Sbjct: 72 QWLEENYEIAEGVCIPRSALYMHYLDFCEKN---DTQPVNAASFGKIIRQQ--FPQLTTR 126 Query: 755 KIEKEWKSKRIIKGLKLKP 773 ++ +SK G+ +K Sbjct: 127 RLGTRGQSKYHYYGIAVKE 145 >gi|109098560|ref|XP_001099914.1| PREDICTED: transcription factor RFX4-like isoform 2 [Macaca mulatta] Length = 747 Score = 41.8 bits (96), Expect = 0.42, Method: Composition-based stats. Identities = 12/79 (15%), Positives = 34/79 (43%), Gaps = 5/79 (6%) Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754 W+++ +I E + +L Y ++ E+ D + ++ + ++Q+ + Sbjct: 72 QWLEENYEIAEGVCIPRSALYMHYLDFCEKN---DTQPVNAASFGKIIRQQ--FPQLTTR 126 Query: 755 KIEKEWKSKRIIKGLKLKP 773 ++ +SK G+ +K Sbjct: 127 RLGTRGQSKYHYYGIAVKE 145 >gi|23428950|gb|AAM52484.1| winged-helix transcription factor RFX4 variant 3 [Homo sapiens] Length = 735 Score = 41.8 bits (96), Expect = 0.42, Method: Composition-based stats. Identities = 12/79 (15%), Positives = 34/79 (43%), Gaps = 5/79 (6%) Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754 W+++ +I E + +L Y ++ E+ D + ++ + ++Q+ + Sbjct: 63 QWLEENYEIAEGVCIPRSALYMHYLDFCEKN---DTQPVNAASFGKIIRQQ--FPQLTTR 117 Query: 755 KIEKEWKSKRIIKGLKLKP 773 ++ +SK G+ +K Sbjct: 118 RLGTRGQSKYHYYGIAVKE 136 >gi|26329719|dbj|BAC28598.1| unnamed protein product [Mus musculus] Length = 725 Score = 41.8 bits (96), Expect = 0.42, Method: Composition-based stats. Identities = 12/79 (15%), Positives = 34/79 (43%), Gaps = 5/79 (6%) Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754 W+++ +I E + +L Y ++ E+ D + ++ + ++Q+ + Sbjct: 53 QWLEENYEIAEGVCIPRSALYMHYLDFCEKN---DTQPVNAASFGKIIRQQ--FPQLTTR 107 Query: 755 KIEKEWKSKRIIKGLKLKP 773 ++ +SK G+ +K Sbjct: 108 RLGTRGQSKYHYYGIAVKE 126 >gi|73969286|ref|XP_851020.1| PREDICTED: similar to regulatory factor X4 isoform c isoform 2 [Canis familiaris] Length = 725 Score = 41.8 bits (96), Expect = 0.42, Method: Composition-based stats. Identities = 12/79 (15%), Positives = 34/79 (43%), Gaps = 5/79 (6%) Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754 W+++ +I E + +L Y ++ E+ D + ++ + ++Q+ + Sbjct: 53 QWLEENYEIAEGVCIPRSALYMHYLDFCEKN---DTQPVNAASFGKIIRQQ--FPQLTTR 107 Query: 755 KIEKEWKSKRIIKGLKLKP 773 ++ +SK G+ +K Sbjct: 108 RLGTRGQSKYHYYGIAVKE 126 >gi|47132527|ref|NP_998759.1| transcription factor RFX4 isoform c [Homo sapiens] gi|332840240|ref|XP_001161826.2| PREDICTED: transcription factor RFX4 isoform 4 [Pan troglodytes] gi|332278145|sp|Q33E94|RFX4_HUMAN RecName: Full=Transcription factor RFX4; AltName: Full=Regulatory factor X 4; AltName: Full=Testis development protein NYD-SP10 gi|119618188|gb|EAW97782.1| regulatory factor X, 4 (influences HLA class II expression), isoform CRA_a [Homo sapiens] gi|158256326|dbj|BAF84134.1| unnamed protein product [Homo sapiens] Length = 735 Score = 41.8 bits (96), Expect = 0.42, Method: Composition-based stats. Identities = 12/79 (15%), Positives = 34/79 (43%), Gaps = 5/79 (6%) Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754 W+++ +I E + +L Y ++ E+ D + ++ + ++Q+ + Sbjct: 63 QWLEENYEIAEGVCIPRSALYMHYLDFCEKN---DTQPVNAASFGKIIRQQ--FPQLTTR 117 Query: 755 KIEKEWKSKRIIKGLKLKP 773 ++ +SK G+ +K Sbjct: 118 RLGTRGQSKYHYYGIAVKE 136 >gi|67906191|ref|NP_001020089.1| transcription factor RFX4 isoform 1 [Mus musculus] gi|81912034|sp|Q7TNK1|RFX4_MOUSE RecName: Full=Transcription factor RFX4; AltName: Full=Regulatory factor X 4 gi|33359240|gb|AAQ17042.1| regulatory factor X 4 variant [Mus musculus] gi|36314596|gb|AAM52485.2| winged-helix transcription factor RFX4 variant 3 [Mus musculus] gi|41015986|dbj|BAD07408.1| brain-specific regulatory factor X 4 [Mus musculus] Length = 735 Score = 41.8 bits (96), Expect = 0.42, Method: Composition-based stats. Identities = 12/79 (15%), Positives = 34/79 (43%), Gaps = 5/79 (6%) Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754 W+++ +I E + +L Y ++ E+ D + ++ + ++Q+ + Sbjct: 63 QWLEENYEIAEGVCIPRSALYMHYLDFCEKN---DTQPVNAASFGKIIRQQ--FPQLTTR 117 Query: 755 KIEKEWKSKRIIKGLKLKP 773 ++ +SK G+ +K Sbjct: 118 RLGTRGQSKYHYYGIAVKE 136 >gi|81157962|dbj|BAE48231.1| regulatory factor X4, isoform c [Homo sapiens] Length = 744 Score = 41.8 bits (96), Expect = 0.42, Method: Composition-based stats. Identities = 12/79 (15%), Positives = 34/79 (43%), Gaps = 5/79 (6%) Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754 W+++ +I E + +L Y ++ E+ D + ++ + ++Q+ + Sbjct: 72 QWLEENYEIAEGVCIPRSALYMHYLDFCEKN---DTQPVNAASFGKIIRQQ--FPQLTTR 126 Query: 755 KIEKEWKSKRIIKGLKLKP 773 ++ +SK G+ +K Sbjct: 127 RLGTRGQSKYHYYGIAVKE 145 >gi|81157964|dbj|BAE48232.1| regulatory factor X4, isoform d [Homo sapiens] Length = 735 Score = 41.8 bits (96), Expect = 0.42, Method: Composition-based stats. Identities = 12/79 (15%), Positives = 34/79 (43%), Gaps = 5/79 (6%) Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754 W+++ +I E + +L Y ++ E+ D + ++ + ++Q+ + Sbjct: 63 QWLEENYEIAEGVCIPRSALYMHYLDFCEKN---DTQPVNAASFGKIIRQQ--FPQLTTR 117 Query: 755 KIEKEWKSKRIIKGLKLKP 773 ++ +SK G+ +K Sbjct: 118 RLGTRGQSKYHYYGIAVKE 136 >gi|14278918|dbj|BAB59001.1| transcription factor RFX4 [Homo sapiens] gi|119618189|gb|EAW97783.1| regulatory factor X, 4 (influences HLA class II expression), isoform CRA_b [Homo sapiens] Length = 563 Score = 41.8 bits (96), Expect = 0.42, Method: Composition-based stats. Identities = 12/79 (15%), Positives = 34/79 (43%), Gaps = 5/79 (6%) Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754 W+++ +I E + +L Y ++ E+ D + ++ + ++Q+ + Sbjct: 72 QWLEENYEIAEGVCIPRSALYMHYLDFCEKN---DTQPVNAASFGKIIRQQ--FPQLTTR 126 Query: 755 KIEKEWKSKRIIKGLKLKP 773 ++ +SK G+ +K Sbjct: 127 RLGTRGQSKYHYYGIAVKE 145 >gi|113200743|ref|YP_717903.1| putative replication protein [Canine papillomavirus 3] gi|83314075|gb|ABC02205.1| putative replication protein [Canine papillomavirus 3] Length = 628 Score = 41.8 bits (96), Expect = 0.43, Method: Composition-based stats. Identities = 27/179 (15%), Positives = 57/179 (31%), Gaps = 21/179 (11%) Query: 461 VEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNL 520 E + + + ++ EV+ + + L G K G +GKS Sbjct: 413 EEEGDWKNIGNFLR--YQGIEVITFI-GALRDMLKGIPKRTCMCI-VGPPDTGKSAFCLS 468 Query: 521 IKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN--DEINAAKI 578 + FG + + K+ L L +RI +I + ++ D I+ + Sbjct: 469 LLDFFGGRVLSFTNY------------KSQFWLQPLADTRIALIDDATKSTWDYIDE-YM 515 Query: 579 KQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637 + G+ + L + N I N ++ + + R ++ F Sbjct: 516 RNALDGNAICVDLKHKNPLQIRCPP--LLITSNINIKHNDRWRYLYSRIHIVEFKHAFP 572 >gi|157869704|ref|XP_001683403.1| hypothetical protein [Leishmania major strain Friedlin] gi|68126468|emb|CAJ04379.1| putative mitochondrial DNA primase [Leishmania major strain Friedlin] Length = 532 Score = 41.8 bits (96), Expect = 0.43, Method: Composition-based stats. Identities = 13/94 (13%), Positives = 28/94 (29%), Gaps = 12/94 (12%) Query: 209 EITAFLSCFGEEFYNGSHDEWIPVVMAVHHET-----------RGSSKGKEIARRWSKQG 257 E + E G WI + + + ++ + S++ Sbjct: 373 ESASRWLRQATEVEVGEWRTWIGLGLCAYRVAYHFRNARNLPRPAMAEMLDAWTEASRKC 432 Query: 258 S-TYDEENFNYKWDTFDFEEIGDTAKKRSTFTSL 290 + +W FD E++G + S + L Sbjct: 433 PLKFHSGECEARWAAFDPEKLGSQSDWWSAYKRL 466 >gi|5852135|emb|CAB55379.1| hypothetical protein L7836.04 [Leishmania major] Length = 679 Score = 41.8 bits (96), Expect = 0.43, Method: Composition-based stats. Identities = 13/94 (13%), Positives = 28/94 (29%), Gaps = 12/94 (12%) Query: 209 EITAFLSCFGEEFYNGSHDEWIPVVMAVHHET-----------RGSSKGKEIARRWSKQG 257 E + E G WI + + + ++ + S++ Sbjct: 520 ESASRWLRQATEVEVGEWRTWIGLGLCAYRVAYHFRNARNLPRPAMAEMLDAWTEASRKC 579 Query: 258 S-TYDEENFNYKWDTFDFEEIGDTAKKRSTFTSL 290 + +W FD E++G + S + L Sbjct: 580 PLKFHSGECEARWAAFDPEKLGSQSDWWSAYKRL 613 >gi|220921974|ref|YP_002497275.1| virulence-associated E family protein [Methylobacterium nodulans ORS 2060] gi|219946580|gb|ACL56972.1| virulence-associated E family protein [Methylobacterium nodulans ORS 2060] Length = 509 Score = 41.8 bits (96), Expect = 0.44, Method: Composition-based stats. Identities = 26/147 (17%), Positives = 44/147 (29%), Gaps = 15/147 (10%) Query: 485 YFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544 + V G KA + + G G+ KST G + + Sbjct: 258 FLVAMVARIYEPGCKADYMMVLEGEQGARKST----ACAILGGPWFSDNLPDVTTGKDVA 313 Query: 545 EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604 + L G ++ I+E + + A +K R +YG P Sbjct: 314 Q---------HLAGKWLIEIAEMSAMSKAEDAALKAFISRPVERYRPSYGRKEIIQPRQC 364 Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIP 631 NK ++R+ RRY + Sbjct: 365 VFIGTTNKATYLRDETGG--RRYWPVK 389 >gi|300726996|ref|ZP_07060416.1| primase C 2 (PriCT-2) family [Prevotella bryantii B14] gi|299775719|gb|EFI72309.1| primase C 2 (PriCT-2) family [Prevotella bryantii B14] Length = 810 Score = 41.8 bits (96), Expect = 0.45, Method: Composition-based stats. Identities = 15/104 (14%), Positives = 35/104 (33%), Gaps = 3/104 (2%) Query: 166 SEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGS 225 + + I + S + + +RQ +E+ L G + Sbjct: 144 PIYWANKADEVSKSIKPRSSVNSFSKSTAAYNCDEADRQAEIQEVARQLVDRGIDI-TAG 202 Query: 226 HDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKW 269 ++ W+ + A+ G+EI + S+ YD + ++ Sbjct: 203 YNNWLNLGFAL--ADGLGEDGREIFHQLSQLNDEYDTAECDRQY 244 >gi|83311002|ref|YP_421266.1| ATPase of the AAA+ class [Magnetospirillum magneticum AMB-1] gi|82945843|dbj|BAE50707.1| ATPase of the AAA+ class [Magnetospirillum magneticum AMB-1] Length = 711 Score = 41.8 bits (96), Expect = 0.46, Method: Composition-based stats. Identities = 29/178 (16%), Positives = 58/178 (32%), Gaps = 15/178 (8%) Query: 481 EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ 540 + + AL N + G G+GK+ ++I G ++ D+ Sbjct: 476 QRHRVIDQWGFDALT-DNPLGLCVLFHGPSGTGKTMAASVIANELG----LSLYKVDLSS 530 Query: 541 NRPPEAGKANPSLIRLMGSR--IVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYS 598 G+ L +L + ++ +E + + A + + D Sbjct: 531 VLSKYIGETEKHLAQLFDQAEAMNVVLFFDEAESLFARRTETKDSHDRYANLQTGYLLQR 590 Query: 599 ESPASFTPFIVPNKHLFVRNPDDAWWRRYI-VIPFDKPIANRDASFAQKLETKYTLEA 655 + T + N ++N D A+ RR+ +I F P + +L K A Sbjct: 591 VERYAGTVILSTN---LLKNLDQAFTRRFRFIIEF--PFPGPEERL--RLWQKAFPAA 641 >gi|39938842|ref|NP_950608.1| ATP-dependent Zn protease [Onion yellows phytoplasma OY-M] gi|39721951|dbj|BAD04441.1| ATP-dependent Zn protease [Onion yellows phytoplasma OY-M] Length = 457 Score = 41.8 bits (96), Expect = 0.46, Method: Composition-based stats. Identities = 39/286 (13%), Positives = 90/286 (31%), Gaps = 30/286 (10%) Query: 350 KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSL 409 K + L K + + ++ +++ + R + ++ + + L Sbjct: 144 KEKQEELEKLAQEKAQLQTQENLQQQISQLNQALNYVEANQKRIEELKTQKEYRKNQTEL 203 Query: 410 EAGSIFSI--TSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ 467 + + F + T L + + L+ + + TK+ K + + Sbjct: 204 KNLNDFQLFLTDQKLAFEKQKKNLTIQLNHLKENKPLPHTKKQVTFK---DVYGMETEKE 260 Query: 468 EFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 E DL+S + ++ ++++ + + G G+GK+ L IK G Sbjct: 261 ELDDLLSYFRTNQSLINF-----------DKVRPKGYLLYGPPGTGKTFL---IKALCGE 306 Query: 528 QYVINAEASDIMQNRPPEAGKANPSL------IRLMGSRIVIISETNENDEINAAKIKQM 581 V + R G+ + I+ I E + N + I Sbjct: 307 ANVHFINLIP-SKFRQKYIGEGEKEVEKVWQEAENHDKTIIFIDEIEGLENRNDSNI-SS 364 Query: 582 TGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627 G + + L+ + ++ S N + D A R+ Sbjct: 365 GGVNVINTLLDKLDGFNSSNKKIVLMGATNNLHKI---DTALRSRF 407 >gi|255012417|ref|ZP_05284543.1| ATPase, AAA family protein [Bacteroides sp. 2_1_7] Length = 670 Score = 41.8 bits (96), Expect = 0.48, Method: Composition-based stats. Identities = 42/281 (14%), Positives = 77/281 (27%), Gaps = 45/281 (16%) Query: 455 STGTPFVEGEPSQEFLDLVSGYF-ES-----EEVMDYFTRCV------GMALLGGNKAQR 502 T + E +E +E +D R + G LL K Sbjct: 378 VTNYVYDEQNTIKEIKRWNDEIIEPDHILKPKETIDGIIRPIIGNKEKGCLLLSPQKDNI 437 Query: 503 FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIV 562 I G GSGK+ ++ + A G V + + I + + L Sbjct: 438 SFIICGPPGSGKTYIVKQMAKALGWPLVELSPSHFIKKGLDFIESTSREIFNDLYNLHHA 497 Query: 563 IISETNENDEI-NAAKIKQMTGGDCM----TARLNYGNTYSESPASFTPFIVPNKHLFVR 617 ++ ++ N ++ + T + TA + + + N Sbjct: 498 VVFFDECDELFRNRSESGETTSSRTILNFLTASMLPKLQDLHDKQNIIFVLGTNYL---H 554 Query: 618 NPDDAWWR--RYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY----ISKGL 671 N D A R R+ D + W KG + + Sbjct: 555 NIDSAVRRKGRF------------DHRILFDRPDEEARRLFYWA-KGKSNDSDISEDEFV 601 Query: 672 DVDIPEVCLKAKEE----ERQGTDTYQAWIDDCCDIGENLW 708 + + +Q D Q+++D C GE+ Sbjct: 602 KRTKTALVKDLTKALSSSYQQEED--QSYLDWCGAKGEDSE 640 >gi|302544537|ref|ZP_07296879.1| N- superfamily bifunctional DNA primase/polymerase [Streptomyces hygroscopicus ATCC 53653] gi|302462155|gb|EFL25248.1| N- superfamily bifunctional DNA primase/polymerase [Streptomyces himastatinicus ATCC 53653] Length = 258 Score = 41.8 bits (96), Expect = 0.49, Method: Composition-based stats. Identities = 16/111 (14%), Positives = 22/111 (19%), Gaps = 13/111 (11%) Query: 46 IDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIP 105 + P G L D + V P + Sbjct: 81 WARSPGASILLPTGRTFDAL-----DVPESAGCLALARMERRNVDLGPVTS--TPDRRML 133 Query: 106 FRMNKEGIKKKKTTESTQG----HLDI--LGCGQYFVAYNIHPKTKKEYTW 150 F + K G +D+ G G Y VA W Sbjct: 134 FFVLPGAAAKIPDLLRNLGWPPSSVDLAARGDGDYVVAPPTRVGRHGPTQW 184 >gi|290986472|ref|XP_002675948.1| 26S proteosome subunit P45 [Naegleria gruberi] gi|284089547|gb|EFC43204.1| 26S proteosome subunit P45 [Naegleria gruberi] Length = 407 Score = 41.8 bits (96), Expect = 0.49, Method: Composition-based stats. Identities = 46/330 (13%), Positives = 100/330 (30%), Gaps = 43/330 (13%) Query: 345 SLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEEN----- 399 + + A I + +K+ + +L N+ + R + Q + Sbjct: 18 NGLKNYYIAKIQEKEIVLKDKIENLRRLQAQRNELNGRVRSLKEELQQLQEPGSHVGEVV 77 Query: 400 ------SKAKSTAQSLEAGSIFSITSDLLDSSSRF-LGEQDGILDLETGQKVKPTKELYI 452 +Q + + +L D S + ++ L K + + Sbjct: 78 KVMGKKKVLIKISQEGKYIVDIDKSIELKDLSPGVRVALRNDSYALHKILPNKIDPLVSL 137 Query: 453 TKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHI 506 K P E + + +EV++ +G+A + + + Sbjct: 138 MKVEKVPDATYEMVGGLDEQIKEV---KEVIELPIKHPELFESLGIA------QPKGVIM 188 Query: 507 RGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISE 566 G G+GK+ L + + + I S+++Q E + L + I Sbjct: 189 YGPPGTGKTLLARAVAH-HTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIF 247 Query: 567 TNENDEINAAKIKQMTGGDCMTARL-----NYGNTYSESPASFTPFIVPNKHLFVRNPDD 621 +E D I + + + GG + ES + + N+ + D Sbjct: 248 MDEIDSIGSTRTEGGKGGGDSEVQRTMLELLNQLDGFESTQNIKIIMATNRIDIL---DP 304 Query: 622 AWWR--RYIVIPFDKPIANRDASFAQKLET 649 A R R D+ I + + +L+ Sbjct: 305 ALLRPGRI-----DRKIEFPNPNELARLDI 329 >gi|19746259|ref|NP_607395.1| hypothetical protein spyM18_1288 [Streptococcus pyogenes MGAS8232] gi|71903676|ref|YP_280479.1| phage protein [Streptococcus pyogenes MGAS6180] gi|19748446|gb|AAL97894.1| hypothetical phage protein [Streptococcus pyogenes MGAS8232] gi|71802771|gb|AAX72124.1| phage protein [Streptococcus pyogenes MGAS6180] Length = 293 Score = 41.8 bits (96), Expect = 0.49, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 37/93 (39%), Gaps = 10/93 (10%) Query: 1 MPVMQWKEQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKID--KLPACGFGFVC 58 M + + A + G+++IPLR P K+++ ++ E I C + + Sbjct: 1 MRYLMYHTTALSFLKKGYQVIPLRKDTGTPMI--KFKDIQITEEVIKNTNWFNCDYALLM 58 Query: 59 GVGEQPLYAFDID--SKDEKTANTFKDTFEILH 89 + ++ DID DEK A + + Sbjct: 59 ----RGIWCIDIDTHDMDEKLAKELYIMIKKMG 87 >gi|262342357|gb|ACY54678.1| NS1 [Aleutian mink disease virus] Length = 641 Score = 41.8 bits (96), Expect = 0.50, Method: Composition-based stats. Identities = 27/154 (17%), Positives = 45/154 (29%), Gaps = 20/154 (12%) Query: 458 TPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTL 517 F E E + L + +E+ Y + + L + + I + G GG+GK+ L Sbjct: 385 IKFNEPENDEPLLATIRDMGLNEQ---YLKKALCTILTKQSGKRGCIWLYGPGGTGKTLL 441 Query: 518 MNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAK 577 +LI A N ++ N I+ E Sbjct: 442 ASLICKATKNYGMVTT-------------SNPNFPWTDCGNRNIIWAEECGNLGNWVED- 487 Query: 578 IKQMTGGDCMTARLNYGNTYSESPASFTPFIVPN 611 K +TGG + S + N Sbjct: 488 FKAITGGGDVKVDTKNKQPQS---IKGCVIVTSN 518 >gi|194380922|dbj|BAG64029.1| unnamed protein product [Homo sapiens] Length = 247 Score = 41.8 bits (96), Expect = 0.50, Method: Composition-based stats. Identities = 12/79 (15%), Positives = 34/79 (43%), Gaps = 5/79 (6%) Query: 695 AWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKRE 754 W+++ +I E + +L Y ++ E+ D + ++ + ++Q+ + Sbjct: 72 QWLEENYEIAEGVCIPRSALYMHYLDFCEKN---DTQPVNAASFGKIIRQQ--FPQLTTR 126 Query: 755 KIEKEWKSKRIIKGLKLKP 773 ++ +SK G+ +K Sbjct: 127 RLGTRGQSKYHYYGIAVKE 145 >gi|327532765|ref|NP_001127417.1| 26S protease regulatory subunit 8 [Pongo abelii] Length = 398 Score = 41.8 bits (96), Expect = 0.51, Method: Composition-based stats. Identities = 42/262 (16%), Positives = 80/262 (30%), Gaps = 32/262 (12%) Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP----TKELYITKS 455 K K + G +D + + + L K + Sbjct: 73 DKKKVLVKVHPEGKFVVDVDKNIDINDV---TPNCRVALRNDSYTLHKTLPNKVDPLVSL 129 Query: 456 TGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGV 509 V + L E +EV++ +G+A + + + G Sbjct: 130 MMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIA------QPKGVLLYGP 183 Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569 G+GK+ L + + + I S+++Q E + L + I +E Sbjct: 184 PGTGKTLLARAVAH-HTDCTFIRVSGSELVQKLIGEGARMVRELFVMAREHAPSIIFMDE 242 Query: 570 NDEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625 D I +++++ +G D R L E+ + + N+ + D A R Sbjct: 243 IDSIGSSRLEGGSGRDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DSALLR 299 Query: 626 --RY-IVIPFDKPIANRDASFA 644 R I F P N +A Sbjct: 300 PGRIDRKIEF--PPPNEEARLD 319 >gi|55729400|emb|CAH91432.1| hypothetical protein [Pongo abelii] Length = 398 Score = 41.8 bits (96), Expect = 0.51, Method: Composition-based stats. Identities = 42/262 (16%), Positives = 80/262 (30%), Gaps = 32/262 (12%) Query: 400 SKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKP----TKELYITKS 455 K K + G +D + + + L K + Sbjct: 73 DKKKVLVKVHPEGKFVVDVDKNIDINDV---TPNCRVALRNDSYTLHKTLPNKVDPLVSL 129 Query: 456 TGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGV 509 V + L E +EV++ +G+A + + + G Sbjct: 130 MMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIA------QPKGVLLYGP 183 Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569 G+GK+ L + + + I S+++Q E + L + I +E Sbjct: 184 PGTGKTLLARAVAH-HTDCTFIRVSGSELVQKLIGEGARMVRELFVMAREHAPSIIFMDE 242 Query: 570 NDEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625 D I +++++ +G D R L E+ + + N+ + D A R Sbjct: 243 IDSIGSSRLEGGSGRDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DSALLR 299 Query: 626 --RY-IVIPFDKPIANRDASFA 644 R I F P N +A Sbjct: 300 PGRIDRKIEF--PPPNEEARLD 319 >gi|118379323|ref|XP_001022828.1| hypothetical protein TTHERM_00951860 [Tetrahymena thermophila] gi|89304595|gb|EAS02583.1| hypothetical protein TTHERM_00951860 [Tetrahymena thermophila SB210] Length = 683 Score = 41.8 bits (96), Expect = 0.51, Method: Composition-based stats. Identities = 26/161 (16%), Positives = 53/161 (32%), Gaps = 11/161 (6%) Query: 335 KKDKNNVYIWSLTL--DKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYR 392 + N +I + +K + + ED+ + ++ + K FN Sbjct: 526 ENSNKNRHIINEIESDNKYSDTNQKQNQKKMEDINKK--QLQNIEQQIKKDMNIFNFIKD 583 Query: 393 RQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYI 452 V++ T + L A + S +S+ LD + + +LE + Sbjct: 584 IILVKKAIMMILTKEQLAALHLVSCSSNYLDVD--LNNVESDVDELEQRLNLSH-----Y 636 Query: 453 TKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMA 493 K E SQ D +S + + E + + R + Sbjct: 637 EKQLAILQSEKFQSQYLQDFLSKFSDDENINEIDIRILSSI 677 >gi|320581811|gb|EFW96030.1| 26S protease regulatory subunit 8 [Pichia angusta DL-1] Length = 398 Score = 41.4 bits (95), Expect = 0.54, Method: Composition-based stats. Identities = 32/219 (14%), Positives = 68/219 (31%), Gaps = 27/219 (12%) Query: 429 LGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDY--- 485 + + +L K + + P + + +EV++ Sbjct: 105 VCLRSDTYELHQILPNKVDPLVSLMMVEKVPDSTYDMVGGLDKQIKEI---KEVIELPVK 161 Query: 486 ---FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542 +G+A + + + G G+GK+ L + + + I S+++Q Sbjct: 162 HPELFESLGIA------QPKGVILYGPPGTGKTLLARAVAH-HTDCKFIRVSGSELVQKY 214 Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARL-----NYGNTY 597 E + L + I +E D I +++++ +GG + Sbjct: 215 IGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESSSGGGDSEVQRTMLELLNQLDG 274 Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWR--RY-IVIPFD 633 ES + N+ + D A R R I F Sbjct: 275 FESSKDIKIIMATNRLDIL---DPALLRPGRIDRKIEFP 310 >gi|241677072|ref|XP_002411545.1| hypothetical protein IscW_ISCW011327 [Ixodes scapularis] gi|215504245|gb|EEC13739.1| hypothetical protein IscW_ISCW011327 [Ixodes scapularis] Length = 457 Score = 41.4 bits (95), Expect = 0.54, Method: Composition-based stats. Identities = 20/134 (14%), Positives = 46/134 (34%), Gaps = 12/134 (8%) Query: 513 GKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDE 572 GK L+ +++ N + ++ + A + + + I+ Sbjct: 3 GKDNLL--VRHLLSNFFTSKSDQR-MDATFRYNAEEVRFVIES----EMPILDMDEGGRR 55 Query: 573 INAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF 632 K KQ TGGD + R Y ++ + N ++ A +R +++P Sbjct: 56 ----KFKQYTGGDTVANRQPYDRCNNDFILTSKFLTASNDLPYIPLHMSAEQKRIMIVPA 111 Query: 633 DKPIANRDASFAQK 646 +D + ++ Sbjct: 112 LSTFI-QDRALLRR 124 >gi|2492521|sp|Q25544|PRS8_NAEFO RecName: Full=26S protease regulatory subunit 8 homolog; AltName: Full=Tat-binding protein homolog gi|1353667|gb|AAB01762.1| Tat-binding protein homolog [Naegleria fowleri] Length = 414 Score = 41.4 bits (95), Expect = 0.55, Method: Composition-based stats. Identities = 45/330 (13%), Positives = 100/330 (30%), Gaps = 43/330 (13%) Query: 345 SLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEEN----- 399 + + A I + +++ + +L N+ + R + Q + Sbjct: 25 NGLKNYYIAKIQEKEIVLRDKIENLRRLQAQRNELNGRVRSLKEELQQLQEPGSHVGEVV 84 Query: 400 ------SKAKSTAQSLEAGSIFSITSDLLDSSSRF-LGEQDGILDLETGQKVKPTKELYI 452 +Q + + +L D + + ++ L K + + Sbjct: 85 KVMGKKKVLIKISQEGKYIVDIDKSIELKDLTPGVRVALRNDSYALHKILPNKIDPLVSL 144 Query: 453 TKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHI 506 K P E + + +EV++ +G+A + + + Sbjct: 145 MKVEKVPDATYEMVGGLDEQIKEI---KEVIELPIKHPELFESLGIA------QPKGVIM 195 Query: 507 RGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISE 566 G G+GK+ L + + + I S+++Q E K L + I Sbjct: 196 YGPPGTGKTLLARAVAH-HTDCTFIRVSGSELVQKYIGEGSKMVRELFVMAREHAPSIIF 254 Query: 567 TNENDEINAAKIKQMTGGDCMTARL-----NYGNTYSESPASFTPFIVPNKHLFVRNPDD 621 +E D I + + + GG + ES + + N+ + D Sbjct: 255 MDEIDSIGSTRTEGGKGGGDSEVQRTMLELLNQLDGFESTQNIKIIMATNRIDIL---DP 311 Query: 622 AWWR--RYIVIPFDKPIANRDASFAQKLET 649 A R R D+ I + + +L+ Sbjct: 312 ALLRPGRI-----DRKIEFPNPNELARLDI 336 >gi|313227570|emb|CBY22717.1| unnamed protein product [Oikopleura dioica] Length = 447 Score = 41.4 bits (95), Expect = 0.58, Method: Composition-based stats. Identities = 37/222 (16%), Positives = 70/222 (31%), Gaps = 24/222 (10%) Query: 446 PTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNK 499 P K + V + L E +EV++ +G+A Sbjct: 168 PNKIDPLVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIA------ 221 Query: 500 AQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGS 559 + + + G G+GK+ L + + + I S+++Q E + L + Sbjct: 222 QPKGVLLYGPPGTGKTLLARAVAH-HTDCTFIRVSGSELVQKFIGEGSRMVRELFVMARE 280 Query: 560 RIVIISETNENDEINAAKIKQMTGGDCMTA-----RLNYGNTYSESPASFTPFIVPNKHL 614 I +E D I +++++ +GG L E + + N+ Sbjct: 281 HSPSIIFMDEIDSIGSSRMESGSGGGDSEVQRTMLELLNQLDGFEPHQNIKIIMATNRID 340 Query: 615 FVRNPDDAWWR--RY-IVIPFDKPIANRDASFAQKLETKYTL 653 + D A R R I F P + + K L Sbjct: 341 IL---DSALLRPGRIDRKIEFPAPNEDARVDILRIHSRKMNL 379 >gi|71659600|ref|XP_821521.1| hypothetical protein [Trypanosoma cruzi strain CL Brener] gi|70886903|gb|EAN99670.1| hypothetical protein, conserved [Trypanosoma cruzi] Length = 929 Score = 41.4 bits (95), Expect = 0.58, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 32/82 (39%), Gaps = 8/82 (9%) Query: 697 IDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKI 756 +D+C + + SL +++ + ++ + D + +L G E Sbjct: 110 VDECLQMSPDA-TSLRSLYEAFVSFCKEYVLMDTTGMKNMPFYGDL-----NVGPGYEHY 163 Query: 757 EKEWKSKRIIKGLKLKPAFESV 778 ++ K KR L ++ FE V Sbjct: 164 DRRLKRKRHW--LAIRHRFEDV 183 >gi|324997703|ref|ZP_08118815.1| hypothetical protein PseP1_03003 [Pseudonocardia sp. P1] Length = 460 Score = 41.4 bits (95), Expect = 0.59, Method: Composition-based stats. Identities = 37/283 (13%), Positives = 81/283 (28%), Gaps = 40/283 (14%) Query: 511 GSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN 570 G+GK L ++ + F + + ++ + L+ G +V E Sbjct: 157 GAGKGKLARVLVHPF---LGHDPAEWTLSKSENENEKRLTTILLGSPG--VVFFDNVGEG 211 Query: 571 DEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRR---Y 627 + + + T ARL N + + N F ++ RR Sbjct: 212 VRVGGDSLAKATAEPTYAARLLQSNKSFIARVRCAWLMTGNNPSFSKD----MARRTVRI 267 Query: 628 IVIPFDKPIANRDASFAQKLE--TKYTLEAKKWF-LKGVKAYISK-------------GL 671 + P + R LE W L V++++++ G Sbjct: 268 RLAPDTEHPERRTDFRHPDLEDWAAENRGRLAWAALTLVQSWLAEGGIGGGQTFGSYEGW 327 Query: 672 DVDIPEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRK 731 + L + E ++D+ + E EE A++ + + K Sbjct: 328 ASVL-GGILDSTE--------VYGFLDNRDEFMEEAVEEEDDWAEAIELWADFYGTKPVK 378 Query: 732 RISTRTVTLNLKQKGFIGGIKREKIEK---EWKSKRIIKGLKL 771 T+ + + + R++ G ++ Sbjct: 379 PSELHTLLRLTHELDLGLDSMDVRALGAALRSRRGRVLGGYRI 421 >gi|37595917|ref|NP_932321.1| E1 [Human papillomavirus type 96] gi|37089417|gb|AAQ88295.1| E1 [Human papillomavirus type 96] Length = 608 Score = 41.4 bits (95), Expect = 0.59, Method: Composition-based stats. Identities = 17/153 (11%), Positives = 37/153 (24%), Gaps = 16/153 (10%) Query: 486 FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545 F LL K + G GK+ + A G + + A +++ Sbjct: 415 FLDAFKHFLLSRTKKNCILF-YGPSDCGKTMFCMSLIKALGGRVISFAN----AKSQFWL 469 Query: 546 AGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTY-SESPASF 604 + L + + + ++ G+ ++ + P Sbjct: 470 QPLTESKIAMLDDATEACWNYLDTY-------LRNGLDGNWVSVDCKHKAPIQIRFPP-- 520 Query: 605 TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIA 637 I N + R + F Sbjct: 521 -LLITSNYDILKNERYRFLVSRIKIFEFKNKFP 552 >gi|86561515|ref|NP_490816.4| related to yeast Vacuolar Protein Sorting factor family member (vps-4) [Caenorhabditis elegans] gi|145312333|gb|AAK29883.4| Related to yeast vacuolar protein sorting factor protein 4 [Caenorhabditis elegans] Length = 430 Score = 41.4 bits (95), Expect = 0.60, Method: Composition-based stats. Identities = 30/167 (17%), Positives = 52/167 (31%), Gaps = 19/167 (11%) Query: 494 LLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL 553 G K + I + G G+GKS + + G + +SD+M E+ K +L Sbjct: 144 FTGNRKPWQGILLFGPPGTGKSYIAKAVATEAGESTFFSISSSDLMSKWLGESEKLVKNL 203 Query: 554 IRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES-----PASFTPFI 608 L I +E D + +A+ + + +AR + + Sbjct: 204 FALAREHKPSIIFIDEIDSLCSAR----SDNESESARRIKTEFMVQMQGVGLNNDGILVL 259 Query: 609 VPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEA 655 ++ D A RR F+K I K Sbjct: 260 GATNIPWI--LDSAIRRR-----FEKRIY---IPLPDIHARKEMFRI 296 >gi|146162295|ref|XP_001009196.2| 26S proteasome subunit P45 family protein [Tetrahymena thermophila] gi|146146457|gb|EAR88951.2| 26S proteasome subunit P45 family protein [Tetrahymena thermophila SB210] Length = 395 Score = 41.4 bits (95), Expect = 0.67, Method: Composition-based stats. Identities = 37/202 (18%), Positives = 65/202 (32%), Gaps = 26/202 (12%) Query: 447 TKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKA 500 + + K P + V +EV++ +G+A Sbjct: 121 DPLVSLMKVEKVPDSTYDMIGGLDQQVKEV---KEVIELPIKHPEIFESLGIA------Q 171 Query: 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSR 560 + + + G G+GK+ L I + + I S+++Q E + L + Sbjct: 172 PKGVLLYGPPGTGKTLLARAIAH-HTDCTFIRVSGSELVQKYIGEGARMVRELFVMARQH 230 Query: 561 IVIISETNENDEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVPNKHLFV 616 + +E D I A+I GGD R L ES + + N+ + Sbjct: 231 APCLIFIDEVDSIGGARIDSDRGGDSEVQRTMLELLNQLDGFESTNNIKIIMATNRIDIL 290 Query: 617 RNPDDAWWR--RY-IVIPFDKP 635 D A R R + F P Sbjct: 291 ---DPALLRPGRIDRKVEFPNP 309 >gi|149054559|gb|EDM06376.1| peptidase (prosome, macropain) 26S subunit, ATPase 5, isoform CRA_e [Rattus norvegicus] Length = 269 Score = 41.4 bits (95), Expect = 0.68, Method: Composition-based stats. Identities = 35/184 (19%), Positives = 66/184 (35%), Gaps = 25/184 (13%) Query: 474 SGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 E +EV++ +G+A + + + G G+GK+ L + + + Sbjct: 19 KQIKEIKEVIELPVKHPELFEALGIA------QPKGVLLYGPPGTGKTLLARAVAH-HTD 71 Query: 528 QYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCM 587 I S+++Q E + L + I +E D I +++++ +GGD Sbjct: 72 CTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSE 131 Query: 588 TAR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR--RY-IVIPFDKPIANRD 640 R L E+ + + N+ + D A R R I F P N + Sbjct: 132 VQRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DSALLRPGRIDRKIEF--PPPNEE 186 Query: 641 ASFA 644 A Sbjct: 187 ARLD 190 >gi|114669882|ref|XP_511591.2| PREDICTED: similar to mSUG1 protein isoform 12 [Pan troglodytes] Length = 268 Score = 41.4 bits (95), Expect = 0.68, Method: Composition-based stats. Identities = 35/184 (19%), Positives = 66/184 (35%), Gaps = 25/184 (13%) Query: 474 SGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 E +EV++ +G+A + + + G G+GK+ L + + + Sbjct: 18 KQIKEIKEVIELPVKHPELFEALGIA------QPKGVLLYGPPGTGKTLLARAVAH-HTD 70 Query: 528 QYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCM 587 I S+++Q E + L + I +E D I +++++ +GGD Sbjct: 71 CTFIRVSGSELVQKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGSSRLEGGSGGDSE 130 Query: 588 TAR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR--RY-IVIPFDKPIANRD 640 R L E+ + + N+ + D A R R I F P N + Sbjct: 131 VQRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DSALLRPGRIDRKIEF--PPPNEE 185 Query: 641 ASFA 644 A Sbjct: 186 ARLD 189 >gi|241695468|ref|XP_002413060.1| DNA binding protein Mcm [Ixodes scapularis] gi|215506874|gb|EEC16368.1| DNA binding protein Mcm [Ixodes scapularis] Length = 790 Score = 41.4 bits (95), Expect = 0.69, Method: Composition-based stats. Identities = 18/132 (13%), Positives = 36/132 (27%), Gaps = 12/132 (9%) Query: 120 ESTQGHLDILGCGQYFVAYNIHPKTKK-----------EYTWTTPPHRFKVEDTPLLSEE 168 +G G+Y V P + + + + P +E Sbjct: 5 WRGRGRWASRRRGRYIVPAPSSPDSTRLSPDATSGVPDPSHPSWGLYFTDGNCPPAGAER 64 Query: 169 DVEYLFKFFQEITVPLVKDKKSIIPSK-TWTNNNNRQYTNREITAFLSCFGEEFYNGSHD 227 V L +F + + SK ++ + + + E G HD Sbjct: 65 RVTLLENYFAAKLSRFLDSNGAPDRSKTSYEVDVVELADDESVREAWPDLKESLRMGPHD 124 Query: 228 EWIPVVMAVHHE 239 + +A+H Sbjct: 125 TLRIMGVALHQV 136 >gi|197294568|ref|YP_001799109.1| Putative peptidase M41 cell division protein, fragment [Candidatus Phytoplasma australiense] gi|171853895|emb|CAM11857.1| Putative peptidase M41 cell division protein, fragment [Candidatus Phytoplasma australiense] Length = 2026 Score = 41.4 bits (95), Expect = 0.69, Method: Composition-based stats. Identities = 40/309 (12%), Positives = 81/309 (26%), Gaps = 31/309 (10%) Query: 351 ITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLE 410 T K +L E+ + + + + N+E + Sbjct: 1144 ETKLSTQEREIQKITDINLVEKNKLKTEIQRQKSLISHNQNNFSNLESRYLILQADLQKK 1203 Query: 411 AGSIFSITSDLLDSSSRFL--------GEQDGILDLETGQKVKPTKELYITKSTGTPFVE 462 I + ++ D + + + I DL + K Sbjct: 1204 ENVIQAQKENMKDFAQNAISKMNESQSNINNSIKDLTQQIIAANKLKEEEKKIINNSKSP 1263 Query: 463 GEPSQEFLDL--VSGYFESEEVMDYFTRCVGMAL--------LGGNKAQRFIHIRGVGGS 512 + E L + E ++ + L +G K + + + G G+ Sbjct: 1264 KKFQVEVSKLPTLGEVIGFREEIEQLKDFLSY-LKNPNKYNKIGVRKPPKGVLLYGPPGT 1322 Query: 513 GKSTLMNLI--KYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN 570 GK+ L I + + +++ S P+ R I+ I E Sbjct: 1323 GKTFLAKAIAKEANLPFFALNSSDFSKSYLGEGPKLINDVFEEARKKSPSIIFIDECESV 1382 Query: 571 DEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFI--VPNKHLFVRNPDDAWWRRYI 628 + + D M A ++ F+ N + D A R Sbjct: 1383 FRSRISNKSSHSDHDNMIAAFLTQTEGFKTDPKHPVFLMGATNYKDEI---DSAILSR-- 1437 Query: 629 VIPFDKPIA 637 F++ I Sbjct: 1438 ---FNRHIK 1443 >gi|206561307|ref|YP_002232072.1| hypothetical protein BCAL2966 [Burkholderia cenocepacia J2315] gi|198037349|emb|CAR53279.1| conserved hypothetical protein [Burkholderia cenocepacia J2315] Length = 934 Score = 41.0 bits (94), Expect = 0.72, Method: Composition-based stats. Identities = 12/75 (16%), Positives = 24/75 (32%), Gaps = 8/75 (10%) Query: 202 NRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYD 261 + Q A + + S + W + A+ HE + G ++ WS+ Y Sbjct: 6 DEQQRVEAALACIPP------DVSRETWYRIAAALKHEMGDA--GFDLFDGWSRGHDGYA 57 Query: 262 EENFNYKWDTFDFEE 276 + W + Sbjct: 58 ASDARDTWRSLSTSG 72 >gi|291232111|ref|XP_002735988.1| PREDICTED: HSPA12B-like [Saccoglossus kowalevskii] Length = 600 Score = 41.0 bits (94), Expect = 0.74, Method: Composition-based stats. Identities = 31/228 (13%), Positives = 71/228 (31%), Gaps = 11/228 (4%) Query: 258 STYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFS 317 TY E + K + + A + + +L + + ++ A+ Sbjct: 82 ETYSELSVEDKTHYYFDK--FKMALYKEGLDKVIDTEVELTAANGHSMKAVKVFSHAIH- 138 Query: 318 IYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNN 377 K +T K + ++ ++ + + K+ + + + + + Sbjct: 139 YLKMEALKVITETTGVEFKGEEVQWVLTVPAI--------WGQASKQFMREAAYQANVAS 190 Query: 378 KNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILD 437 ++ S E G S +S + G +D Sbjct: 191 RDHDKQLIIALEPEAASLHCIESPMAGFVNGKEHGVKCSDVVARPGTSYMIVDCGGGTVD 250 Query: 438 LETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDY 485 + + K + I K+TG PF + +EF L+ F + ++DY Sbjct: 251 ITMHRITSDKKLMEIHKATGGPFGGAQVDEEFEKLLKKIFGEKFILDY 298 >gi|269123583|ref|YP_003306160.1| AAA ATPase central domain-containing protein [Streptobacillus moniliformis DSM 12112] gi|268314909|gb|ACZ01283.1| AAA ATPase central domain protein [Streptobacillus moniliformis DSM 12112] Length = 395 Score = 41.0 bits (94), Expect = 0.74, Method: Composition-based stats. Identities = 24/184 (13%), Positives = 54/184 (29%), Gaps = 28/184 (15%) Query: 471 DLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530 ++ E + R + N G G+GK+TL +I G YV Sbjct: 18 KDFDEFYGQENIRKILFRML------ENNKIISSIFFGPSGTGKTTLAKIIADKLGYDYV 71 Query: 531 INAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR 590 + + KA S+ ++ E + +++ + + + Sbjct: 72 YLNAIKASKNDITQISLKAKNSV----NKTLLFFDEIHRFNKLQQDSLLEDLENGNI--- 124 Query: 591 LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETK 650 ++ + + + A R ++ F K + +K+ + Sbjct: 125 --------------ILIGATTENPYF-SLNRALLSRVLLFEFKKLDEEDIFNILEKIAKE 169 Query: 651 YTLE 654 LE Sbjct: 170 EQLE 173 >gi|195164327|ref|XP_002023000.1| GL16409 [Drosophila persimilis] gi|194105062|gb|EDW27105.1| GL16409 [Drosophila persimilis] Length = 269 Score = 41.0 bits (94), Expect = 0.74, Method: Composition-based stats. Identities = 36/184 (19%), Positives = 65/184 (35%), Gaps = 25/184 (13%) Query: 474 SGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 E +EV++ +G+A + + + G G+GK+ L + + Sbjct: 19 KQIKEIKEVIELPVKHPELFDALGIA------QPKGVLLYGPPGTGKTLLARAVAH-HTE 71 Query: 528 QYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCM 587 I S+++Q E + L + I +E D I +++I+ +GGD Sbjct: 72 CTFIRVSGSELVQKFIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRIESGSGGDSE 131 Query: 588 TAR----LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR--RY-IVIPFDKPIANRD 640 R L E+ + + N+ + D A R R I F P N + Sbjct: 132 VQRTMLELLNQLDGFEATKNIKVIMATNRIDIL---DPALLRPGRIDRKIEF--PPPNEE 186 Query: 641 ASFA 644 A Sbjct: 187 ARLD 190 >gi|209885530|ref|YP_002289387.1| AAA ATPase, central domain protein [Oligotropha carboxidovorans OM5] gi|209873726|gb|ACI93522.1| AAA ATPase, central domain protein [Oligotropha carboxidovorans OM5] Length = 298 Score = 41.0 bits (94), Expect = 0.77, Method: Composition-based stats. Identities = 23/154 (14%), Positives = 49/154 (31%), Gaps = 17/154 (11%) Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAG----------KANPSL 553 + G G+GK+ I + + NR +G +A + Sbjct: 73 VIFHGDVGTGKTATAECIANKLVIEARSEDSILFKLSNRVRGSGMVGEMGTLIAEAFKKV 132 Query: 554 IRLMGSRIVIISETNENDEINAAKIKQMTGG-DCMTARLNYG--NTYSESPASFTPFIVP 610 I+ G + +E D + A++ ++ + D + + + + Sbjct: 133 IQSAGKHRRAVLIIDEGDSLGASRAQEHSHHEDKVAVNTLIQGVDDLRQYGGRIVVILCT 192 Query: 611 NKHLFVRNPDDAWWRRYIVI-PFDKPIANRDASF 643 N+ + D A RR +I F +P + Sbjct: 193 NRLSVL---DPALRRRAAIIEEFRRPTDDERRQL 223 >gi|225430151|ref|XP_002284747.1| PREDICTED: hypothetical protein [Vitis vinifera] gi|296081963|emb|CBI20968.3| unnamed protein product [Vitis vinifera] Length = 420 Score = 41.0 bits (94), Expect = 0.77, Method: Composition-based stats. Identities = 43/326 (13%), Positives = 89/326 (27%), Gaps = 35/326 (10%) Query: 350 KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSL 409 I + ++ + N++ V E K ++ L Sbjct: 40 HIHDLQLQVRQKSHNLNRLEAQRNDLNSRVRMLREELQLLQEPGSYVGEVVKVMGKSKVL 99 Query: 410 EAGSIFSITSDLLDSSSRF--------LGEQDGILDLETGQKVKPTKELYITKSTGTPFV 461 +D + + ++ L K + + K P Sbjct: 100 VKVHPEGKYVVDIDKNIDITKITPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDS 159 Query: 462 EGEPSQEFLDLVSGYFESEEVMDY------FTRCVGMALLGGNKAQRFIHIRGVGGSGKS 515 + + +EV++ +G+A + + + G G+GK+ Sbjct: 160 TYDMIGGLDQQIKEI---KEVIELPIKHPELFESLGIA------QPKGVLLYGPPGTGKT 210 Query: 516 TLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINA 575 L + + + I S+++Q E + L + I +E D I + Sbjct: 211 LLARAVAH-HTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGS 269 Query: 576 AKIKQMTGGDCMTARL-----NYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR--RY- 627 A+++ TG + E+ + N+ + D A R R Sbjct: 270 ARMESGTGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDIL---DQALLRPGRID 326 Query: 628 IVIPFDKPIANRDASFAQKLETKYTL 653 I F P + K L Sbjct: 327 RKIEFPNPNEESRFDILKIHSRKMNL 352 >gi|323693251|ref|ZP_08107469.1| hypothetical protein HMPREF9475_02332 [Clostridium symbiosum WAL-14673] gi|323502734|gb|EGB18578.1| hypothetical protein HMPREF9475_02332 [Clostridium symbiosum WAL-14673] Length = 272 Score = 41.0 bits (94), Expect = 0.77, Method: Composition-based stats. Identities = 26/211 (12%), Positives = 54/211 (25%), Gaps = 32/211 (15%) Query: 466 SQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF 525 S E + E + L + + G G GK+ + Sbjct: 33 SDEIKKQLDNVIVEYEKKEILK---AYGLTPK----KKLLFCGAPGCGKTICAEAVANIL 85 Query: 526 GNQYVINAEASDIMQNRPPEAGKAN--PSLIRLMGSRIVIISETNE-NDEINA----AKI 578 + I + + ++ E + + +++ Sbjct: 86 DLPILYTCFDGLISSYLGETSSNIRKVFDFAS-KNNWVLFFDEFDAIGKSRDTVEEHSEL 144 Query: 579 KQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY-IVIPFDKPIA 637 K++ + N + D A WRR+ ++ F+KP Sbjct: 145 KRVVNS--------FLQILDGFTCDSLVIAATNHEKAI---DKALWRRFDEIVMFNKPNY 193 Query: 638 NRDASFAQKLETK---YTLEAKKWF--LKGV 663 + QK L+ K+ L+G Sbjct: 194 EQIVMLIQKKLRAFSVECLDINKFAKELEGC 224 >gi|284931717|gb|ADC31655.1| AAA ATPase-domain protein [Mycoplasma gallisepticum str. F] Length = 345 Score = 41.0 bits (94), Expect = 0.78, Method: Composition-based stats. Identities = 24/159 (15%), Positives = 48/159 (30%), Gaps = 14/159 (8%) Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVI 563 +G G+GK+ + + G + + I + L + + ++ Sbjct: 100 FLFQGSPGTGKTESVKHLARILGRDCYVVDFDTLIDSKLGQTTRNISN-LFQEINKYLIA 158 Query: 564 ISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESP------ASFTPFIVPNKHLFVR 617 DEI+A + + D R T S + N Sbjct: 159 QKSVILFDEIDALALDRTNSRD---VREMGRATTSVLKGLDNLDPNVLLIATTN---LYN 212 Query: 618 NPDDAWWRRY-IVIPFDKPIANRDASFAQKLETKYTLEA 655 + D A RR+ +I F++ ++ L Y + Sbjct: 213 HFDKALTRRFDYIINFNRYEKEDLIRISEILLNSYLPKF 251 >gi|28895809|ref|NP_802159.1| primase [Streptococcus pyogenes SSI-1] gi|28811058|dbj|BAC63992.1| putative primase [Streptococcus pyogenes SSI-1] Length = 108 Score = 41.0 bits (94), Expect = 0.79, Method: Composition-based stats. Identities = 12/72 (16%), Positives = 27/72 (37%), Gaps = 3/72 (4%) Query: 683 KEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNL 742 ++ ++T A+IDD + + + L Y E+ + + + T L Sbjct: 1 MHAFKRDSNTILAFIDDWFERFTSTVLPTRFLWWLYKEWCKDNGHT---PLKQSTFENEL 57 Query: 743 KQKGFIGGIKRE 754 G +K++ Sbjct: 58 STNIPDGWVKKK 69 >gi|31544885|ref|NP_853463.1| AAA ATPase domain-containing protein [Mycoplasma gallisepticum str. R(low)] gi|31541732|gb|AAP57031.1| AAA ATPase-domain protein [Mycoplasma gallisepticum str. R(low)] gi|284930961|gb|ADC30900.1| AAA ATPase-domain protein [Mycoplasma gallisepticum str. R(high)] Length = 345 Score = 41.0 bits (94), Expect = 0.80, Method: Composition-based stats. Identities = 24/159 (15%), Positives = 48/159 (30%), Gaps = 14/159 (8%) Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVI 563 +G G+GK+ + + G + + I + L + + ++ Sbjct: 100 FLFQGSPGTGKTESVKHLARILGRDCYVVDFDTLIDSKLGQTTRNISN-LFQEINKYLIA 158 Query: 564 ISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESP------ASFTPFIVPNKHLFVR 617 DEI+A + + D R T S + N Sbjct: 159 QKSVILFDEIDALALDRTNSRD---VREMGRATTSVLKGLDNLDPNVLLIATTN---LYN 212 Query: 618 NPDDAWWRRY-IVIPFDKPIANRDASFAQKLETKYTLEA 655 + D A RR+ +I F++ ++ L Y + Sbjct: 213 HFDKALTRRFDYIINFNRYEKEDLIRISEILLNSYLPKF 251 >gi|322491944|emb|CBZ27217.1| conserved hypothetical protein [Leishmania mexicana MHOM/GT/2001/U1103] Length = 535 Score = 41.0 bits (94), Expect = 0.81, Method: Composition-based stats. Identities = 12/94 (12%), Positives = 31/94 (32%), Gaps = 12/94 (12%) Query: 209 EITAFLSCFGEEFYNGSHDEWIPVVMAVH----------HETRGS-SKGKEIARRWSKQG 257 E + E G WI + + + + R + ++ + S++ Sbjct: 374 ENASRWLRQATEVEVGEWRTWIGLGLCAYRVAYQFRNARNLPRLAMAEMLDAWTEASRKC 433 Query: 258 S-TYDEENFNYKWDTFDFEEIGDTAKKRSTFTSL 290 + +W F+ + +G+ + S + L Sbjct: 434 PLKFHSGECEARWAAFNPDRLGNQSDWWSAYKRL 467 >gi|2352444|gb|AAC72442.1| orf109 [Streptococcus phage Sfi21] Length = 109 Score = 41.0 bits (94), Expect = 0.83, Method: Composition-based stats. Identities = 10/73 (13%), Positives = 24/73 (32%), Gaps = 3/73 (4%) Query: 683 KEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNL 742 +E ++ +T ++++ + L Y + + + K L Sbjct: 1 MQEFKEENNTVYKFLNEYLSDVVSTRIPVRFLWDVYRSWCHEGNHTIPK---KSNFEKEL 57 Query: 743 KQKGFIGGIKREK 755 Q +G IK + Sbjct: 58 AQNLPVGWIKDRQ 70 >gi|319936295|ref|ZP_08010713.1| hypothetical protein HMPREF9488_01546 [Coprobacillus sp. 29_1] gi|319808671|gb|EFW05215.1| hypothetical protein HMPREF9488_01546 [Coprobacillus sp. 29_1] Length = 115 Score = 41.0 bits (94), Expect = 0.85, Method: Composition-based stats. Identities = 21/108 (19%), Positives = 33/108 (30%), Gaps = 16/108 (14%) Query: 13 AIHNGFKLIPLRLGDKRPQRLGKWEEQLL-SSEKIDKLP---ACGFGFVCGVGEQPLYAF 68 N FK+ PL++ K Q W+E+ +I + G G L Sbjct: 11 YAKNNFKVFPLKVNSKSGQVCKSWKEEATMDVNQIYQWFSNTDYNVGVRTG---GGLVVI 67 Query: 69 D-------IDSKDEKTANTFKDTFE--ILHGTPIVRIGQKPKILIPFR 107 D ID K N + E + + + K + R Sbjct: 68 DGSYYFISIDYLIAKANNFVYEFLEGTKVLSKTQIDSTKIKKKQMRSR 115 >gi|317478741|ref|ZP_07937894.1| VirE domain-containing protein [Bacteroides sp. 4_1_36] gi|316905076|gb|EFV26877.1| VirE domain-containing protein [Bacteroides sp. 4_1_36] Length = 698 Score = 41.0 bits (94), Expect = 0.86, Method: Composition-based stats. Identities = 27/187 (14%), Positives = 57/187 (30%), Gaps = 16/187 (8%) Query: 484 DYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYA-FGNQYVINAEASDIMQNR 542 + + L + G G K+T M + + + + + + ++ Sbjct: 423 KWLVATIASLLDTKVVNHEILVFIGKQGIYKTTWMQRLLPVELQRYFYVKSNSRRVSKD- 481 Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602 L L +V + E E +++K +TG + R YG+ P Sbjct: 482 ---------DLFTLTEFALVCLEELEEMTSAQVSQLKAITGMTDVNERAAYGHFKESRPH 532 Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKG 662 + N F+ + RR+ +PF+ + + Y W G Sbjct: 533 IASFCGTSNNVTFLNDLSG--NRRW--LPFEVDSIDSPFDYPIDYAGVYAQGYALWK-SG 587 Query: 663 VKAYISK 669 + + Sbjct: 588 FHYWFEQ 594 >gi|308505464|ref|XP_003114915.1| hypothetical protein CRE_28272 [Caenorhabditis remanei] gi|308259097|gb|EFP03050.1| hypothetical protein CRE_28272 [Caenorhabditis remanei] Length = 409 Score = 41.0 bits (94), Expect = 0.89, Method: Composition-based stats. Identities = 49/328 (14%), Positives = 90/328 (27%), Gaps = 53/328 (16%) Query: 345 SLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKS 404 + +K + + K +E E + N + Sbjct: 12 DILREKSDEQTLRLYWATK------VDEAEQAVTKKEQNVRRLQAQKNELNGKVALLKDE 65 Query: 405 TAQSLEAGSIFSITSDLLDSSSRFL-GEQDGIL------DLETGQKVKPTK------ELY 451 + E S +D + DG D++ Q V T+ Sbjct: 66 IQRLHEQASHVGEVCKAMDKKKVLVKNNPDGKYIVDVDKDIDINQLVAGTRVAMKAESYM 125 Query: 452 ITKSTGTPFVEGEPSQEFLD-----------LVSGYFESEEVMDY------FTRCVGMAL 494 I K L E +EV++ +G Sbjct: 126 IHKILPNKVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPVKHPELFDALG--- 182 Query: 495 LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLI 554 + + + + G G+GK+ L + + I S+++Q E + L Sbjct: 183 ---IEQPKGVLLYGPPGTGKTLLARAVAH-HTECTFIRVSGSELVQKFIGEGARMVRELF 238 Query: 555 RLMGSRIVIISETNENDEINAAKIKQMTGGDCMTAR----LNYGNTYSESPASFTPFIVP 610 + I +E D I +++++ GGD R L E+ + + Sbjct: 239 VMAREHSPSIIFMDEIDSIGSSRLEGSRGGDSEVQRTMLELLNQLDGFEATKNIKVIMAT 298 Query: 611 NKHLFVRNPDDAWWR--RY-IVIPFDKP 635 N+ + D A R R I F P Sbjct: 299 NRIDIL---DSALLRPGRIDRKIEFPAP 323 >gi|241239914|ref|XP_002401587.1| hypothetical protein IscW_ISCW003905 [Ixodes scapularis] gi|215496210|gb|EEC05851.1| hypothetical protein IscW_ISCW003905 [Ixodes scapularis] Length = 317 Score = 41.0 bits (94), Expect = 0.90, Method: Composition-based stats. Identities = 15/64 (23%), Positives = 24/64 (37%), Gaps = 1/64 (1%) Query: 577 KIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPF-DKP 635 K KQ TGGD + R Y S+ + N ++ A R ++ P Sbjct: 36 KFKQFTGGDRVANRQPYDKCNSDFHITAKFVTASNDLPYISKTMQAEQSRLMITPTVSSS 95 Query: 636 IANR 639 I ++ Sbjct: 96 IPDQ 99 >gi|238020410|ref|ZP_04600836.1| hypothetical protein GCWU000324_00291 [Kingella oralis ATCC 51147] gi|237867390|gb|EEP68396.1| hypothetical protein GCWU000324_00291 [Kingella oralis ATCC 51147] Length = 1444 Score = 41.0 bits (94), Expect = 0.91, Method: Composition-based stats. Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 2/47 (4%) Query: 225 SHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDT 271 S+ +W P+ A+ GK++ WS+QG Y W + Sbjct: 25 SYADWYPMAYAIKDAL--GENGKDLWHDWSRQGDNYKASVAEATWKS 69 >gi|162605904|ref|XP_001713467.1| 26S proteasome SU [Guillardia theta] gi|13794399|gb|AAK39776.1|AF083031_133 26S proteasome SU [Guillardia theta] Length = 383 Score = 40.6 bits (93), Expect = 0.94, Method: Composition-based stats. Identities = 33/152 (21%), Positives = 52/152 (34%), Gaps = 13/152 (8%) Query: 497 GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRL 556 G + + + G G+GK+ ++ I Y + I S+ +Q E K L +L Sbjct: 160 GIDPPKGVLLYGPPGTGKTLIVKAIAYR-NSCAFIRTAGSEFVQKYLGEGPKMVRDLFKL 218 Query: 557 MGSRIVIISETNENDEINAAKIKQMTGGD----CMTARLNYGNTYSESPASFTPFIVPNK 612 S I +E D I + TG D + L + ++ + N Sbjct: 219 ANSYDSSIIFIDEIDAIATKRFDANTGADREVQRILIELLTQMDGFDVNSNTKIIMCTN- 277 Query: 613 HLFVRNPDDAWWR-----RYIVIPFDKPIANR 639 V + D A R R I PF R Sbjct: 278 --RVESLDPAILRPGRIDRKIYFPFPNTAEKR 307 >gi|9630380|ref|NP_046813.1| nonstructural protein NS1 [Diatraea saccharalis densovirus] gi|6136265|sp|O71153|VNCS_DSDNV RecName: Full=Non-capsid protein NS-1; AltName: Full=NCVP1; AltName: Full=Non-structural protein NS1 gi|3170012|gb|AAC17999.1| nonstructural protein NS1 [Diatraea saccharalis densovirus] Length = 545 Score = 40.6 bits (93), Expect = 0.95, Method: Composition-based stats. Identities = 56/522 (10%), Positives = 135/522 (25%), Gaps = 52/522 (9%) Query: 143 KTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVP-----LVKDKKSIIPSKTW 197 T ++ W + S+E+ +Y+ + +++ + K + Sbjct: 39 TTSRKREWAYGGRGT-MASLAKESQENFQYMAEELEKMGNQFFGYVTGQSVKPSSAYISD 97 Query: 198 TNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQG 257 + L +G NG + +H S + W Q Sbjct: 98 VIILRDIQLRDQCLDVLREYGRSRRNG-LFGFSEEGDHIHVIHDCSYTNRSCRDIWLGQV 156 Query: 258 STYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKL------IPKGLLASRFSDAY 311 + T + K+ + Y + +G S+ Sbjct: 157 KPFG-----TVQKTGKPVKYIWEFKRTDWYDVFIYFFIRKRGERAIYIRGESGKIPSNDE 211 Query: 312 NKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSE 371 +K+ + ++D +Y+ ++ I + A N + K+ S Sbjct: 212 CVRWAREFKEREMVSSSDCTDYYECEQQEHKISR----RSDAGSTNGRLYEKKT---YSA 264 Query: 372 EPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRF--- 428 + + + + + + + I + D Sbjct: 265 GKFAYIRQKTKALLRKYYVSPISAICDVPEFRDDDLLCDPKNRDYIQAACEDFGKDLNAM 324 Query: 429 -----LGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVM 483 + +++ P + + E L + E+++ Sbjct: 325 SLREIYNLLTEDYNFTDDKELNPYAQFISSMKYDNLEGSLNIVNELLKY--QCNDDEDLI 382 Query: 484 DYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP 543 F + L I GK+ ++I + + Sbjct: 383 VEFLTNLVNVLDRRIPKLNAFLIISPPSGGKNFFFDMIFGLL------------LSYGQL 430 Query: 544 PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG-NTYSESPA 602 +A + N + ++ V++ + IK M GGD T R+ + + + Sbjct: 431 GQANRHNLFAFQEAPNKRVLLWNEPNYESSLTDTIKMMFGGDPYTVRVKNRMDAHVKRTP 490 Query: 603 SFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFA 644 + N F+ A+ R I ++ +D Sbjct: 491 --VIILTNNTVPFMYE--LAFSDRIIQYKWNAAPFLKDYELK 528 >gi|254439360|ref|ZP_05052854.1| hypothetical protein OA307_4230 [Octadecabacter antarcticus 307] gi|198254806|gb|EDY79120.1| hypothetical protein OA307_4230 [Octadecabacter antarcticus 307] Length = 623 Score = 40.6 bits (93), Expect = 0.99, Method: Composition-based stats. Identities = 28/164 (17%), Positives = 57/164 (34%), Gaps = 8/164 (4%) Query: 479 SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDI 538 ++ +F +L G + +++ G GSGKS LM L+ G + Sbjct: 237 DADI--FFGWVAAASLGGFPAWRSHLYVYGSRGSGKSKLMELVAGLLGEFGGNVLNDATE 294 Query: 539 MQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTA-RLNYGNTY 597 R +A P LI + + ++ A ++M+GG+ R ++ Sbjct: 295 AGIRQSRNNQARPILIDEFEPDQGTRNGSKQDKMF--ALFRRMSGGEGGRVSRGGADHSA 352 Query: 598 SESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDA 641 ++ H+ + D + R+++I D Sbjct: 353 VSFRTLGAAYVTSINHIQLEPQDRS---RFVMIDLGHLPTTSDP 393 >gi|294143055|ref|YP_003559033.1| hypothetical protein SVI_4284 [Shewanella violacea DSS12] gi|293329524|dbj|BAJ04255.1| hypothetical protein [Shewanella violacea DSS12] Length = 394 Score = 40.6 bits (93), Expect = 1.0, Method: Composition-based stats. Identities = 21/152 (13%), Positives = 50/152 (32%), Gaps = 9/152 (5%) Query: 422 LDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEE 481 D R +G+ D + P ++ T + + ++ L + Sbjct: 69 FDFHPRSQAYLNGMHDWMSHNGDWP----WLETIIVTAPDDNKILGDWKKLAIDERGDTK 124 Query: 482 VMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKY--AFGNQYVINAEASDIM 539 ++D+ + + A+ ++ F + G G+ L LI F +V + + Sbjct: 125 LLDFMQQGLLPAIDKQYRSNGFRIMNGFTGNAGLGLYTLINRPDLFNAYFVASP---VLS 181 Query: 540 QNRPPEAGKANPSLIRLMGSRIVIISETNEND 571 + A L + G + T+++ Sbjct: 182 DDFAYVIKDAPKKLAAMKGKPRFLFMSTSDSG 213 >gi|67920909|ref|ZP_00514428.1| hypothetical protein CwatDRAFT_5379 [Crocosphaera watsonii WH 8501] gi|67857026|gb|EAM52266.1| hypothetical protein CwatDRAFT_5379 [Crocosphaera watsonii WH 8501] Length = 300 Score = 40.6 bits (93), Expect = 1.0, Method: Composition-based stats. Identities = 36/257 (14%), Positives = 76/257 (29%), Gaps = 32/257 (12%) Query: 299 PKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNF 358 K L+ AYNK + KK + K W ++ + Sbjct: 27 DKQSLSMSTQAAYNKLLEGRGKKEPTTHLEVVKFWLQRSGCKWCYNDKGYYWFNKETHVW 86 Query: 359 LVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSIT 418 + + L + ++ + + + ++ Sbjct: 87 ELYRSLTEWLLRFKLSEDTPSKELKEMFPCVLKTNKDEGS-------------------- 126 Query: 419 SDLLDSSSRFLGEQDGILDLETGQKV----KPTKELYITKSTGTPFVEGEPSQEFLDLVS 474 L S + +G+ D++ G+ L + ++ EGE E L L+ Sbjct: 127 IKKLPKPSGVIPFSNGVFDIKKGKFRVGAEPQDYLLSLGENFYYWDYEGEKPVEILHLID 186 Query: 475 GYF-ESEEVMDYFTRCVGMALLGGNK-----AQRFIHIR--GVGGSGKSTLMNLIKYAFG 526 E++ + + ++G + + + G SG+STL N++ G Sbjct: 187 MMSGGDEKLRELILAVCWLNIVGVQERRYDGFKNCFILWTSKDGYSGRSTLFNILDTCSG 246 Query: 527 NQYVINAEASDIMQNRP 543 N+ D+ P Sbjct: 247 NRICHLERLEDLTDANP 263 >gi|321476281|gb|EFX87242.1| hypothetical protein DAPPUDRAFT_307146 [Daphnia pulex] Length = 2318 Score = 40.6 bits (93), Expect = 1.0, Method: Composition-based stats. Identities = 32/309 (10%), Positives = 84/309 (27%), Gaps = 30/309 (9%) Query: 441 GQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTR---CVGMALLGG 497 + + ++ ++ L+ + +E+ Y T +G AL Sbjct: 1589 HKVIASDEKGDTPLYVAAACEHENLCKKILNFLKEMLSDDELRKYLTDPNGFLGDAL--- 1645 Query: 498 NKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLM 557 + ++G ++ +K FG ++I ++ ++ A + Sbjct: 1646 -----WDTMKGKKIKMFRIILESVKKIFGQDFLIALLKAESIKYEGGNVSSACHDEMFFN 1700 Query: 558 GSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVR 617 VI++ N D + + + AR + + + + Sbjct: 1701 IVFEVIVNGENGYDNLYDLLFQNWKSIEH--ARRI---DNETFRKILSLNGLDDFIKRIF 1755 Query: 618 NPD--DAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDI 675 + D ++V ++ + K +F + +G Sbjct: 1756 DTDAHKGM--HFVVCQILDKFTTEQRKELFRILITENSDTKSYFARCWLDLKEEG----- 1808 Query: 676 PEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLA---KSYSEYREQELNYDRKR 732 C +KE + +D + + + YS Y + Sbjct: 1809 --NCKSSKEILKCISDNLGQSVVKELLVRNEYEVIKKAFYLLHDGYSNYIPSHVVSMFSF 1866 Query: 733 ISTRTVTLN 741 ++ + V Sbjct: 1867 LTKKVVYDA 1875 >gi|302831904|ref|XP_002947517.1| hypothetical protein VOLCADRAFT_57246 [Volvox carteri f. nagariensis] gi|300267381|gb|EFJ51565.1| hypothetical protein VOLCADRAFT_57246 [Volvox carteri f. nagariensis] Length = 245 Score = 40.6 bits (93), Expect = 1.0, Method: Composition-based stats. Identities = 26/166 (15%), Positives = 49/166 (29%), Gaps = 16/166 (9%) Query: 472 LVSGYFESEEVMDYFTRCVGMAL------LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF 525 E V + L G + R + + G G+GK+ L + Sbjct: 4 TFDDIVGCERAKQLLHEAVALPLIIPEFFTGIREPWRGVLLHGPPGNGKTLLAKAVAKMV 63 Query: 526 GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGD 585 G + + +S + R E+ K +L + + I +E D + A+ G+ Sbjct: 64 GGAFFAVSPSSLTSKWRG-ESEKLLATLFAVAQAHAPAIIFIDEVDALGGAR---GVDGE 119 Query: 586 CMTARLNYGNTYSESP----ASFTPFIVPNKHLFVRNPDDAWWRRY 627 +R + + + D A RR Sbjct: 120 HEASRRFKAELLQQMDGLASGRGVMVLAATNCP--WDLDPALRRRL 163 >gi|289551313|ref|YP_003472217.1| hypothetical protein SLGD_02002 [Staphylococcus lugdunensis HKU09-01] gi|289180845|gb|ADC88090.1| Hypothetical protein SLGD_02002 [Staphylococcus lugdunensis HKU09-01] Length = 489 Score = 40.6 bits (93), Expect = 1.1, Method: Composition-based stats. Identities = 36/211 (17%), Positives = 60/211 (28%), Gaps = 29/211 (13%) Query: 458 TPFVEGEPSQEFLDLVSGYFESEE-------VMDYFTRCVGMALLGGNKAQRFIHIRGVG 510 + + Y +E+ + V G K I + G Sbjct: 131 VESKSWDGIKRIETFFIDYLGAEDNHYNREVTKKWMMGAVARIYQPGIKYDSMIILYGGQ 190 Query: 511 GSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN 570 G GKST + G+ Y + + K + +L GS I I E + Sbjct: 191 GVGKST---AVSKLGGHWYNQSIKTF-----------KGDEVYKKLQGSWICEIEELSAF 236 Query: 571 DEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVI 630 + IK R +YG P N + F+++ RR+ I Sbjct: 237 QKSTIEDIKGFISAIVDIYRASYGKRTERHPRQCVFVGTTNNYEFLKDQTG--NRRFFPI 294 Query: 631 PFDK------PIANRDASFAQKLETKYTLEA 655 DK P + Q++ + Sbjct: 295 TTDKNKATKSPFDDLTPDVVQQMFAEAKEYF 325 >gi|39938889|ref|NP_950655.1| ATP-dependent Zn protease [Onion yellows phytoplasma OY-M] gi|39721998|dbj|BAD04488.1| ATP-dependent Zn protease [Onion yellows phytoplasma OY-M] Length = 786 Score = 40.6 bits (93), Expect = 1.1, Method: Composition-based stats. Identities = 37/286 (12%), Positives = 88/286 (30%), Gaps = 30/286 (10%) Query: 350 KITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSL 409 K + L K + + + +++ + R + ++ + + L Sbjct: 144 KEKQEELEKLAQEKAQLQTQENLQQQISHLNQALNYVEANQKRIEELKTQKEYRKNQTEL 203 Query: 410 EAGSIFSI--TSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQ 467 + + F + T + + L+ + + TK+ K + + Sbjct: 204 KNLNDFQLFLTDQKFAFEKQKKNLTIQLNHLKENKPLPHTKKQVTFK---DVYGMENEKE 260 Query: 468 EFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 E DL++ + ++ ++++ + + G G+GK+ L IK G Sbjct: 261 ELEDLLTYFRTNQSLINFDQ-----------VRPKGYLLYGPPGTGKTFL---IKALCGE 306 Query: 528 QYVINAEASDIMQNRPPEAGKANPSL------IRLMGSRIVIISETNENDEINAAKIKQM 581 V + R G+ + I+ I E + N + I Sbjct: 307 ANVHFINLIP-SKFRQKYIGEGEKEVDKVWQEAENHDKTIIFIDEIEGLENRNDSNI-SS 364 Query: 582 TGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627 G + + L+ + ++ S N + D A R+ Sbjct: 365 GGVNVINTLLDKLDGFNSSNKKIVLMGANNNLHKI---DSALRSRF 407 >gi|328872757|gb|EGG21124.1| AAA ATPase domain-containing protein [Dictyostelium fasciculatum] Length = 443 Score = 40.6 bits (93), Expect = 1.1, Method: Composition-based stats. Identities = 24/273 (8%), Positives = 72/273 (26%), Gaps = 30/273 (10%) Query: 360 VSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITS 419 + ++ + + + + +N + + ++ A + Sbjct: 44 LKYEKSERSKATIKAKTMEYLQRAEQLKEYLEKTKNKKPVAAMSGSSAKPGAPTTKKNGD 103 Query: 420 -DLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSG--Y 476 D D D + + + + +T+ + + + + + Sbjct: 104 VDDEDMDPE---------DKKRNESLTGS---ILTEKPNVKWDDVAGLHQAKEYLKEAVI 151 Query: 477 FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEAS 536 F + + G K + I + G G+GKS L + + + + + Sbjct: 152 FP----IKFPQMF-----TGKRKPWKGILLYGPPGTGKSYLAKAVATEISSTFFSISPSD 202 Query: 537 DIMQ--NRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594 + + + K + R + ++ I E + + + Sbjct: 203 IVTKWLGDSEKLVKQLFEMAREKKNSVIFIDEIDSLCSTRNDS--ESESARRIKTEFLIQ 260 Query: 595 NTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627 + + + D A RR+ Sbjct: 261 MNGVGTDSDGILVLAATNIP--WGLDLAIRRRF 291 >gi|221483723|gb|EEE22035.1| transketolase, putative [Toxoplasma gondii GT1] Length = 699 Score = 40.6 bits (93), Expect = 1.1, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 31/79 (39%), Gaps = 1/79 (1%) Query: 693 YQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIK 752 + + + GE E ++L + Y + E + S + L+ +G Sbjct: 322 VKQFYAQVQERGERSVEAWNALFERYKKEYPSEGEEIERMFSHKLRPEVLETLKTLGEKA 381 Query: 753 REKIEK-EWKSKRIIKGLK 770 +EK + S R++ G+K Sbjct: 382 KEKADSTRAHSGRMLLGIK 400 >gi|237840945|ref|XP_002369770.1| transketolase, putative [Toxoplasma gondii ME49] gi|211967434|gb|EEB02630.1| transketolase, putative [Toxoplasma gondii ME49] Length = 699 Score = 40.6 bits (93), Expect = 1.1, Method: Composition-based stats. Identities = 15/79 (18%), Positives = 31/79 (39%), Gaps = 1/79 (1%) Query: 693 YQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIK 752 + + + GE E ++L + Y + E + S + L+ +G Sbjct: 322 VKQFYAQVQERGERSVEAWNALFERYKKEYPSEGEEIERMFSHKLRPEVLETLKTLGEKA 381 Query: 753 REKIEK-EWKSKRIIKGLK 770 +EK + S R++ G+K Sbjct: 382 KEKADSTRAHSGRMLLGIK 400 >gi|328769760|gb|EGF79803.1| hypothetical protein BATDEDRAFT_12021 [Batrachochytrium dendrobatidis JAM81] Length = 305 Score = 40.6 bits (93), Expect = 1.1, Method: Composition-based stats. Identities = 20/144 (13%), Positives = 47/144 (32%), Gaps = 17/144 (11%) Query: 493 ALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ--NRPPEAGKAN 550 G K + + + G G+GK+ + I + + +S + + +A Sbjct: 55 IFTGLRKPPKGLLLFGPPGTGKTMIGKCIASQAKATFFNISSSSLTSKWVGDGEKMVRAL 114 Query: 551 PSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFT----- 605 ++ R+ ++ + E + + + Q + G+ + R + T Sbjct: 115 FAVARVHQPSVIFVDEID-------SLLTQRSEGEIESTRRIKTEFLVQFDGCGTDGDDR 167 Query: 606 -PFIVPNKHLFVRNPDDAWWRRYI 628 I D+A RR+ Sbjct: 168 ILMIGATNRPQ--EIDEAARRRFR 189 >gi|313906068|ref|ZP_07839420.1| UvrD/REP helicase [Eubacterium cellulosolvens 6] gi|313469113|gb|EFR64463.1| UvrD/REP helicase [Eubacterium cellulosolvens 6] Length = 653 Score = 40.6 bits (93), Expect = 1.1, Method: Composition-based stats. Identities = 59/474 (12%), Positives = 130/474 (27%), Gaps = 76/474 (16%) Query: 27 DKRPQRLGKWEE--QLLSSEKIDKLPACGFGFV--CGVGEQPLYAFDIDSKDEKTANTFK 82 KRP L KW++ + L ++ + + V E L+ D+++ F+ Sbjct: 190 TKRPDYLAKWQKKFRYLLVDEFQDISPLQYEIVRMLAAPENNLFIV---GDDDQSIYRFR 246 Query: 83 DTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFVAYNIHP 142 G P I++ F + G K E+ + +IL VA Sbjct: 247 --------------GASPGIMLKFPEDYPGAKVIALEENYRSTPEILAAAGSLVA----H 288 Query: 143 KTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNN 202 K+ P + P + +E +K + Sbjct: 289 NHKRYSKNIRPVN-------PSGEPVVYQRFEDSRKECIHLAQSLRKENEKGTPFEEMAV 341 Query: 203 RQYTN---REITAFLSCFGEEFYNGS-----HDEWIPVVMAVHHETRGSSKGKEIARRWS 254 TN RE L + F G D WI + + + S+ + R Sbjct: 342 LFRTNVGCREAVEQLMAYQIPFTMGDVLPCIFDHWIARDIFAYMDLGAGSRKRGDFLRIY 401 Query: 255 KQGSTYDEEN-FNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNK 313 + + Y + F +F+ ++Y + + + + Sbjct: 402 NRPNRYISRDAFYDPVISFENL-------------YIYYEDKEWMCRRVEQLEADLDMVG 448 Query: 314 AMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEP 373 + + + + ++ + +M L + E + + Sbjct: 449 RLAPYGAINYIRREIAYDEYVR-------EYAGARNIPVEDLMQVLDELMESARNYTSYE 501 Query: 374 EDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQD 433 E + RR + + A + + +LD + + Sbjct: 502 EWKQAIADYREKLEQQKKRR---NREPEGVTVATLHASKGMEYDHVYILDVNEGIIPYHK 558 Query: 434 GILDLETGQKVKP--------TKELYITKSTGTPFVEGEPSQEFLDLVSGYFES 479 +LD + ++ + L++ + + +PS + F Sbjct: 559 AVLDADLEEERRMLYVGMTRARHLLHLYSVSERYEKKTDPSP----FLKEIFGD 608 >gi|295696167|ref|YP_003589405.1| methane/phenol/toluene hydroxylase [Bacillus tusciae DSM 2912] gi|295411769|gb|ADG06261.1| methane/phenol/toluene hydroxylase [Bacillus tusciae DSM 2912] Length = 541 Score = 40.6 bits (93), Expect = 1.1, Method: Composition-based stats. Identities = 9/120 (7%), Positives = 30/120 (25%), Gaps = 4/120 (3%) Query: 234 MAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYH 293 +H G S++ +W D+ ++ Sbjct: 261 WILHTAVDGIMSVILEYGDESRRPDKPAYYELWKRWVYDDYYRTYLLPLEKYGIRIPSDL 320 Query: 294 HGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKA---WYKKDKNNVYIWSLTLDK 350 + I + + + + +++ + + + W++K Y + Sbjct: 321 IQE-IWERFMVKDWHHKMAIELSAMWMFNSWRFEPLNERDFEWFEKKYPGWYSKYGNYWE 379 >gi|296112474|ref|YP_003626412.1| AAA family ATPase [Moraxella catarrhalis RH4] gi|295920168|gb|ADG60519.1| AAA family ATPase [Moraxella catarrhalis RH4] gi|326561607|gb|EGE11946.1| AAA family ATPase [Moraxella catarrhalis 7169] gi|326562030|gb|EGE12359.1| AAA family ATPase [Moraxella catarrhalis 46P47B1] gi|326564957|gb|EGE15158.1| AAA family ATPase [Moraxella catarrhalis 12P80B1] gi|326565345|gb|EGE15524.1| AAA family ATPase [Moraxella catarrhalis 103P14B1] gi|326568054|gb|EGE18144.1| AAA family ATPase [Moraxella catarrhalis BC7] gi|326570586|gb|EGE20624.1| AAA family ATPase [Moraxella catarrhalis BC1] gi|326577367|gb|EGE27253.1| AAA family ATPase [Moraxella catarrhalis 101P30B1] gi|326577853|gb|EGE27720.1| AAA family ATPase [Moraxella catarrhalis O35E] Length = 310 Score = 40.6 bits (93), Expect = 1.2, Method: Composition-based stats. Identities = 39/291 (13%), Positives = 81/291 (27%), Gaps = 41/291 (14%) Query: 433 DGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFL--DLVSGYFESEEVMDY---FT 487 + DL Q + + + + + + + Y Sbjct: 6 NQTTDLNRFQNRPKSSAKIAFELSDALYKMDDLVLPIKTKADLERTIG---LRQYQSEVF 62 Query: 488 RCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAG 547 G + + I++ G G+GK+ + I +A G + ++ + Sbjct: 63 EHWGFSETHKFDNKMIINLYGEPGTGKTMSAHAIAHALGKKLILINYGDIESKYVGETPK 122 Query: 548 KANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF-TP 606 + + ++ +E D I + ++ MT + + T Sbjct: 123 NIQAAFEFAKENDAILFF--DEADAILSRRVTNMTSATDTSVNQTRSVMLTLLNDYNDTV 180 Query: 607 FIVPNKHLFVRNPDDAWWRRYIV-----IP--------FDKPIANRDASFAQ-------- 645 N F+ N D A+ RR ++ +P F+K I N+ Sbjct: 181 IFATN---FISNYDPAFMRRILIHIEYTLPDEETRTYLFNKYIPNKLPHSIDLPTIVKLS 237 Query: 646 ------KLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGT 690 + L A +G + L I + E R+ T Sbjct: 238 EGLSGSDISNAILLAAFSAKTEGCDLVTHENLQNKIEAIQRSKSENSRKET 288 >gi|212702815|ref|ZP_03310943.1| hypothetical protein DESPIG_00847 [Desulfovibrio piger ATCC 29098] gi|212673677|gb|EEB34160.1| hypothetical protein DESPIG_00847 [Desulfovibrio piger ATCC 29098] Length = 113 Score = 40.6 bits (93), Expect = 1.2, Method: Composition-based stats. Identities = 6/74 (8%), Positives = 24/74 (32%), Gaps = 12/74 (16%) Query: 693 YQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIK 752 + ++ +CC + + + ++ + + S + + L+++ Sbjct: 44 IRDFMQECCQSSKGVKTTATAIYDRFRVW--WNSRSKEPLPSQKRLGALLQER------- 94 Query: 753 REKIEKEWKSKRII 766 + + RI Sbjct: 95 ---FVRHRRGGRIW 105 >gi|123194338|ref|XP_001283039.1| hypothetical protein [Trichomonas vaginalis G3] gi|121841621|gb|EAX70109.1| hypothetical protein TVAG_594820 [Trichomonas vaginalis G3] Length = 188 Score = 40.3 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 26/163 (15%), Positives = 46/163 (28%), Gaps = 23/163 (14%) Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLE 648 Y + + + N D RRY+V+ +D + L Sbjct: 28 VERKYKDQRVCENVANFIMVSNNAVPMKLESSD---RRYVVVK-TSEAHMQDTEYFDDLA 83 Query: 649 TKYTLEAKKWFLKGVKAYISKGLDVD-IPEVCLKAKEEERQGTDTYQA-WIDD----CCD 702 T + + IP + ++ + + +ID+ C D Sbjct: 84 ETLTSDFYNHLFSYFMTLDISKFNPRQIPHT--EERQTLLEANKSVYELFIDETNFECLD 141 Query: 703 IGENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQK 745 SL Y +Y ++ Y S RT N+K Sbjct: 142 E--------RSLYDEYKQYCQE---YGYMTASKRTFLANVKNL 173 >gi|160902770|ref|YP_001568351.1| recombination factor protein RarA [Petrotoga mobilis SJ95] gi|160360414|gb|ABX32028.1| AAA ATPase central domain protein [Petrotoga mobilis SJ95] Length = 411 Score = 40.3 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 35/248 (14%), Positives = 74/248 (29%), Gaps = 33/248 (13%) Query: 473 VSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVIN 532 V +E++ + + NK R I G GSGKST++ + + Y + Sbjct: 16 VDEVLGNEKLKEILKTWI------KNKKVRSFIIYGEPGSGKSTIVRALINEIKDYYDVF 69 Query: 533 AEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLN 592 + + I + + + + + + N + + G+ Sbjct: 70 SISGAIEGKKKIKDIIEQKNNLFTKPKLLFVDEIHRLNKAEQDTLLLSVETGE------- 122 Query: 593 YGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYT 652 T ++ + + + A R +V + I + Q++E Y Sbjct: 123 -----------LTLIGATTENPAI-SVNPALLSRVLVFKTKELITDDYEKLFQQIEDYYK 170 Query: 653 -LEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD----CCDIGENL 707 L+ K K + Y + + + A E D ++ D +N Sbjct: 171 DLKITKEARKALIEYAGNDIRRIMN-LIETANEAGINSIDL--EFLKDFTGYRLTYDKNA 227 Query: 708 WEESHSLA 715 S Sbjct: 228 KYSFISAY 235 >gi|313618479|gb|EFR90482.1| virulence-associated protein E [Listeria innocua FSL S4-378] Length = 694 Score = 40.3 bits (92), Expect = 1.2, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 46/149 (30%), Gaps = 15/149 (10%) Query: 483 MDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542 V + G K + + G G GKST G+ + + +D+ Sbjct: 394 RKMMVAAVARIVHPGTKFDSVLILNGPQGIGKSTF---FAKLAGDWFSDSLTLTDMKDKA 450 Query: 543 PPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPA 602 PE +L G I+ + E + + +K R +YG P Sbjct: 451 GPE---------KLQGYWILELGELAGMRKTDVEVVKSFISRSDDKYRASYGVNVESHPR 501 Query: 603 SFTPFIVPNKHL-FVRNPDDAWWRRYIVI 630 N F+R+ RR+ + Sbjct: 502 QCIIVGSTNAESGFLRDITG--NRRFWPV 528 >gi|237745755|ref|ZP_04576235.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS] gi|229377106|gb|EEO27197.1| conserved hypothetical protein [Oxalobacter formigenes HOxBLS] Length = 885 Score = 40.3 bits (92), Expect = 1.3, Method: Composition-based stats. Identities = 42/195 (21%), Positives = 69/195 (35%), Gaps = 24/195 (12%) Query: 455 STGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQR----FIHIRGVG 510 S E +++LDL+ F ++ + T G +A F+ I G Sbjct: 498 SLRINRKADEYRRDWLDLLWTAFGAKGLAA-LTFWFGSLFAEQIRALHSSYPFLEIIGEA 556 Query: 511 GSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN 570 G+GKSTL+ + FG + S A N ++ G +V+I E Sbjct: 557 GAGKSTLIEFLWKLFGRGGYEGFDPS----KSSLAARARNF--AQVSGLPVVLIESDRER 610 Query: 571 --------DEINAAKIKQMTGGDCMTARLN--YGNTYSESPASFTPFIVPNKHLFVRNPD 620 + ++K G + AR GN E P + I N + N Sbjct: 611 AEGNNPHVRSFDWDELKTAYNGRSVRARGMATGGNETYEPPFRGSVVISQNNAV---NAS 667 Query: 621 DAWWRRYIVIPFDKP 635 +A R + + FD+ Sbjct: 668 EAILSRIVHLNFDRS 682 >gi|60417238|emb|CAH65781.1| putative replication protein [Sulfolobus neozealandicus] Length = 1053 Score = 40.3 bits (92), Expect = 1.4, Method: Composition-based stats. Identities = 36/286 (12%), Positives = 77/286 (26%), Gaps = 41/286 (14%) Query: 437 DLETGQKVKPTKELYITKSTGTPFVEGEPSQ---EFLDLVSGYFESE-EVMDYFTRCVGM 492 D+ I E + E ++ ++ ++ ++ + + R M Sbjct: 612 DIVMPGFYPGENGKIIAVKVRVEKPSEEKVKKAIEVINELTKWYANQLDKLATVLRWAAM 671 Query: 493 A--------LLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFG----NQYVINAEASDIMQ 540 A N ++ + G +GK+T+ ++ + +G + + + Sbjct: 672 APFAFIYKVAHSFNDFIPWLLLWGSSRTGKTTMGEIVLHLWGLIESDYENESEKDERFQG 731 Query: 541 -----NRPPEAGKANPS--LIRLMGSRIVIISETNENDEINAAKIKQMTGG---DCMTAR 590 AN L ++ S + +K M Sbjct: 732 FGDKIRYVEAGSGANTEYRLGEILRSSTLPFLVNEPGKMFEDTGVKDMIKHAVEKDEARA 791 Query: 591 LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETK 650 PA + NK + DDA+ R++ I F + +K + Sbjct: 792 RGERGRRRRIPAYAILIVTTNKEPPI--DDDAFMSRFLSIHFSYA-EKKSPEMQEKFRNE 848 Query: 651 YTLE---------AKKWFLKGVKAYISKGLDVDIPEVCLKAKEEER 687 + WF+ I K + +E R Sbjct: 849 VMPKLKYLRYIGDFFAWFMIEHPELIKKNWRDI---AIILWQEAYR 891 >gi|160947474|ref|ZP_02094641.1| hypothetical protein PEPMIC_01408 [Parvimonas micra ATCC 33270] gi|158446608|gb|EDP23603.1| hypothetical protein PEPMIC_01408 [Parvimonas micra ATCC 33270] Length = 307 Score = 40.3 bits (92), Expect = 1.4, Method: Composition-based stats. Identities = 26/240 (10%), Positives = 62/240 (25%), Gaps = 25/240 (10%) Query: 20 LIPLRLGDKRPQRL---GKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEK 76 IP+ W + E +++ G FV P D+D+ + Sbjct: 40 KIPISPITCESNEWNKEENWASFETALEGLERSECDGLSFVL-TENDPFVCIDLDNVKDI 98 Query: 77 TANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQGHLDILGCGQYFV 136 + G I + F + K + ++ + Sbjct: 99 FED--VQDIISDFGETYKEISVSGNGVHIF----AKGRIHKNINNQADRFEMYKSNKCIA 152 Query: 137 AYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLV----------- 185 T E E L +E + +++ I + Sbjct: 153 MTGDVIGTCTEIQNEQYKLNLYYEKYAL--KETIRERISYYKNIDSDVPNIEGILKTIYM 210 Query: 186 KDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSK 245 ++K + + + + ++ L+ F + D ++ A++ S + Sbjct: 211 TNRKGRELFRGEFSTGDASKDDFQLLLILNSFTHGNADLMLDIFLKS--ALNRMDDMSKR 268 >gi|156837546|ref|XP_001642796.1| hypothetical protein Kpol_385p7 [Vanderwaltozyma polyspora DSM 70294] gi|156113365|gb|EDO14938.1| hypothetical protein Kpol_385p7 [Vanderwaltozyma polyspora DSM 70294] Length = 362 Score = 40.3 bits (92), Expect = 1.4, Method: Composition-based stats. Identities = 28/192 (14%), Positives = 58/192 (30%), Gaps = 20/192 (10%) Query: 465 PSQEFLDLVSGYFESEEVMDYFTRCVGMALL--------GGNKAQRFIHIRGVGGSGKST 516 S+E E ++ V L+ +A + + G G GK+ Sbjct: 82 TSEEIDISFKDIGGLESIISDLHEGVVYPLMLPELYENNPLLQAPSGVLLYGPPGCGKTM 141 Query: 517 LMNLIKYAFGNQYVINAEASDIMQ--NRPPEAGKANPSLIRLMGSRIVIISETNENDEIN 574 L + G ++ +S + + + A SL + ++ I E + Sbjct: 142 LAKALAKESGANFISIRMSSIMDKWYGESNKIVDAIFSLANKIQPCMIFIDEIDSFLRER 201 Query: 575 AAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIP--F 632 + ++T + A S N + + D A+ RR P F Sbjct: 202 TSTDHEVTA--TLKAEFMTLWDGLVSNGRIMIVGATN---RINDIDSAFLRRL---PKRF 253 Query: 633 DKPIANRDASFA 644 + +++ Sbjct: 254 LISLPDKEQRLK 265 >gi|9885250|emb|CAC04162.1| hypothetical protein [Lactococcus phage phi31] Length = 268 Score = 40.3 bits (92), Expect = 1.4, Method: Composition-based stats. Identities = 33/283 (11%), Positives = 74/283 (26%), Gaps = 29/283 (10%) Query: 8 EQAKQAIHNGFKLIPLRLGDKRPQRLGKWEEQLLSSEKIDKL----PACGFGFVCGVGEQ 63 E A + G +IP+ DK+P + + + L+ ++I P C Sbjct: 7 ETALRYKKLGISIIPVSR-DKKPM-IEFADREPLTEDEIKDFWKQNPTANLAMKCDKFVV 64 Query: 64 PLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKKTTESTQ 123 D + + + P + F + +E + + + Sbjct: 65 VDVDV---HNDINGYESIQPLLDEEWWKPTLSQTTASGGKQYFFLKREDMAVTQRIGFLK 121 Query: 124 GHLDILGC-GQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITV 182 G +DI Y V + + Y W +E + + K T Sbjct: 122 G-VDIKAHENNYVVIPPSVTRKGQ-YKWDNQLPII------TAPKELIREIMKNRDNYTH 173 Query: 183 PLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRG 242 + N T + + G+ + + + Sbjct: 174 Y----------DFSGFTTNGSSKTAQLFETIVHGLGDSGGRNDALARFIGGLFLRNVDFD 223 Query: 243 SSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRS 285 + +++ F +++ +E+ RS Sbjct: 224 VVYQLAKQANF-ATSDPLEDKEFERTFESMFKKEMRRRNGIRS 265 >gi|159146228|gb|ABW90577.1| virulence-associated protein [Bacteriophage APSE-2] Length = 385 Score = 40.3 bits (92), Expect = 1.5, Method: Composition-based stats. Identities = 23/158 (14%), Positives = 43/158 (27%), Gaps = 16/158 (10%) Query: 186 KDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVV--MAVHHETRGS 243 ++ N T ++ + L ++ W+ + +A +TR Sbjct: 184 PKTADDDLTRLVDLQNINDQTFEDLRSALWYPKILNQAENYPSWVDMGNRLAWFKDTRFE 243 Query: 244 SKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLL 303 + K + WS + D E KW R+ + ++F K Sbjct: 244 DEAKTMWLDWSSAAAKGDIEAAEAKWAELRA--------DRTGYQAIFSLAQKAGWVNPG 295 Query: 304 ASRFSDAYNKA-MFSIYKKGHFLYTADTKAWYKKDKNN 340 A R A F + W +N Sbjct: 296 AERLKTAVATVDEFDDLTDP-----PENSKWPTFKRNK 328 >gi|163803932|ref|ZP_02197766.1| hypothetical protein 1103602000458_AND4_04253 [Vibrio sp. AND4] gi|159172269|gb|EDP57163.1| hypothetical protein AND4_04253 [Vibrio sp. AND4] Length = 80 Score = 40.3 bits (92), Expect = 1.5, Method: Composition-based stats. Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 2/68 (2%) Query: 209 EITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYK 268 E+ G + + +W + A++ E +++ +I WS+ GSTYD+ +FN Sbjct: 8 ELHEAEEALGYISPDLPYIDWSKIGRALYSEYGDAAR--DIFEDWSEAGSTYDKRSFNSW 65 Query: 269 WDTFDFEE 276 W F + Sbjct: 66 WKNFRNTK 73 >gi|294899787|ref|XP_002776743.1| Spastin, putative [Perkinsus marinus ATCC 50983] gi|239883944|gb|EER08559.1| Spastin, putative [Perkinsus marinus ATCC 50983] Length = 302 Score = 39.9 bits (91), Expect = 1.6, Method: Composition-based stats. Identities = 27/189 (14%), Positives = 48/189 (25%), Gaps = 34/189 (17%) Query: 474 SGYFESEEVMDYFTRCVGM------ALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGN 527 EE + + M G + + G G+GK+ L + + Sbjct: 33 DDIVGLEEPKRHLMEMIIMPSLNPTLFTGLRAPPLGLLLFGPPGNGKTYLAKAVASQCKD 92 Query: 528 QYVINAEASDIMQNRPPEAGKANPSL---IRLMGSRIVIISETNENDEINAAKIKQMTGG 584 + AS + E K L R ++ + E + + + + G Sbjct: 93 AAFFSVSASALTSRWHGEDEKMVRDLFTVARARAPSVIFMDEVD-------SILGKRGGN 145 Query: 585 DCMTARLNYGNTYSESPASF-------TPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPI- 636 D R + + + D+A RR F K I Sbjct: 146 DHEATRRLKTEMLIQLDGIHQDAEKGRVVVLAATNRPM--DLDEAVLRR-----FPKRIY 198 Query: 637 ---ANRDAS 642 D Sbjct: 199 VPLPEPDTR 207 >gi|155371018|ref|YP_001426552.1| hypothetical protein ATCV1_z071R [Acanthocystis turfacea Chlorella virus 1] gi|155124338|gb|ABT16205.1| hypothetical protein ATCV1_z071R [Acanthocystis turfacea Chlorella virus 1] Length = 120 Score = 39.9 bits (91), Expect = 1.6, Method: Composition-based stats. Identities = 17/116 (14%), Positives = 41/116 (35%), Gaps = 3/116 (2%) Query: 665 AYISKGLDVDIPEVCLKAKEEERQGTDTYQAWID-DCCDIGENLWEESHSLAKSYSEYRE 723 Y K + +PE L +E + T+ ++++ + +GE+ + +Y Sbjct: 1 MYADKNIWTVLPEYFLDTRETIARSTNFIESFLSSEHVALGEDSVVPFADFKSALKDYAS 60 Query: 724 QELNYDRKRISTRTVTLNLKQ-KGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESV 778 + K+++ + K I + + +KG+ +K A Sbjct: 61 SNSLH-MKQLTAEAFRAPFAKYKVSILPQQTIVYNGRQMNTIFLKGVAIKSAMTEE 115 >gi|313236497|emb|CBY11812.1| unnamed protein product [Oikopleura dioica] Length = 458 Score = 39.9 bits (91), Expect = 1.6, Method: Composition-based stats. Identities = 21/150 (14%), Positives = 46/150 (30%), Gaps = 21/150 (14%) Query: 494 LLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQN---RPPEAGKAN 550 G + + + G G+GK+ L + + N AS + + +A Sbjct: 212 FTGIRAPPKGLLLYGPPGNGKTLLAKALAAEMPDAKFFNISASSLTSKWVGEGEKMVRAL 271 Query: 551 PSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSES------PASF 604 S+ R M I+ + E + + + + + + + Sbjct: 272 FSIAREMQPCIIFMDEVD-------SLLSSRSSNEGDAIKRLKTEFLVQFDGAGTNKEDK 324 Query: 605 TPFIVPNKHLFVRNPDDAWWRRY---IVIP 631 + D+A RR+ I++P Sbjct: 325 VTIVAATNLP--HELDEAVLRRFPKRIMLP 352 >gi|326570745|gb|EGE20771.1| AAA family ATPase [Moraxella catarrhalis BC8] gi|326573583|gb|EGE23545.1| AAA family ATPase [Moraxella catarrhalis CO72] Length = 310 Score = 39.9 bits (91), Expect = 1.7, Method: Composition-based stats. Identities = 39/291 (13%), Positives = 81/291 (27%), Gaps = 41/291 (14%) Query: 433 DGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFL--DLVSGYFESEEVMDY---FT 487 + DL Q + + + + + + + Y Sbjct: 6 NQTTDLNRFQNRPKSSAKIAFELSDALYKMDDLVLPIKTKADLEHTIG---LRQYQSEVF 62 Query: 488 RCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAG 547 G + + I++ G G+GK+ + I +A G + ++ + Sbjct: 63 EHWGFSETHKFDNKMIINLYGEPGTGKTMSAHAIAHALGKKLILINYGDIESKYVGETPK 122 Query: 548 KANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF-TP 606 + + ++ +E D I + ++ MT + + T Sbjct: 123 NIQAAFEFAKENDAILFF--DEADAILSRRVTNMTSATDTSVNQTRSVMLTLLNDYNDTV 180 Query: 607 FIVPNKHLFVRNPDDAWWRRYIV-----IP--------FDKPIANRDASFAQ-------- 645 N F+ N D A+ RR ++ +P F+K I N+ Sbjct: 181 IFATN---FISNYDPAFMRRILIHIEYTLPDEETRTYLFNKYIPNKLPHSIDLPTIVKLS 237 Query: 646 ------KLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGT 690 + L A +G + L I + E R+ T Sbjct: 238 EGLSGSDISNAILLAAFSAKTEGCDLVTHENLQNKIEAIQRSKSENSRKET 288 >gi|218133952|ref|ZP_03462756.1| hypothetical protein BACPEC_01841 [Bacteroides pectinophilus ATCC 43243] gi|217991327|gb|EEC57333.1| hypothetical protein BACPEC_01841 [Bacteroides pectinophilus ATCC 43243] Length = 874 Score = 39.9 bits (91), Expect = 1.7, Method: Composition-based stats. Identities = 18/153 (11%), Positives = 49/153 (32%), Gaps = 4/153 (2%) Query: 271 TFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGH-FLYTAD 329 ++ + + F SL + + + + + + Y+ + D Sbjct: 443 SYSIIASLNITRDELQFISLRELFADSVSRAGTYNELYERIAERIEPKYEDEFRQRFAPD 502 Query: 330 TKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKS--PRFWF 387 K K IW+ ++ I ++L V + + E N Sbjct: 503 -KVELSFAKGRSRIWTDIRLRLDDGIYHWLSIQIIHVRNRNNSKEINAVFLARISDEQKI 561 Query: 388 NTDYRRQNVEENSKAKSTAQSLEAGSIFSITSD 420 +++N+++ A A ++ + +++ D Sbjct: 562 EEANQKRNLQDALSAAKLANEAKSRFLSNMSHD 594 >gi|51593842|ref|YP_068410.1| REP protein [Muscovy duck parvovirus] gi|1113785|gb|AAA83224.1| REP protein [Muscovy duck parvovirus] Length = 627 Score = 39.9 bits (91), Expect = 1.7, Method: Composition-based stats. Identities = 32/232 (13%), Positives = 71/232 (30%), Gaps = 27/232 (11%) Query: 437 DLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLG 496 + + ++ + + T T ++ G + ++ ++ +Y + VG L G Sbjct: 262 NRQVKAALENARAEMLLTKTATDYLIG-KDPVLDITKNRIYQILKLNNYNPQYVGSVLCG 320 Query: 497 GNKAQR----FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS 552 K + I + G +GK+ + I +A +N N Sbjct: 321 WVKREFNKRNAIWLYGPATTGKTNIAEAIAHAVPFYGCVN-------------WTNENFP 367 Query: 553 LIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612 + ++ E +++ + K + GG + + P + Sbjct: 368 FNDCVDKMLIWWEEGKMTNKVVESA-KAILGGSAVRVDQKCKGSVCIEPTPVIITSNTDM 426 Query: 613 HLFVRNPDDAWWRRYIVIP-----FDKPIANRDASFAQKLETKYTLEAKKWF 659 + V R IP F ++++ K+ K E KW Sbjct: 427 CMIVDGNSTTMEHR---IPLEERMFQIVLSHKLEGNFGKISKKEVKEFFKWA 475 >gi|609092|emb|CAA52983.1| NS1 [Muscovy duck parvovirus] Length = 626 Score = 39.9 bits (91), Expect = 1.7, Method: Composition-based stats. Identities = 32/232 (13%), Positives = 71/232 (30%), Gaps = 27/232 (11%) Query: 437 DLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLG 496 + + ++ + + T T ++ G + ++ ++ +Y + VG L G Sbjct: 261 NRQVKAALENARAEMLLTKTATDYLIG-KDPVLDITKNRIYQILKLNNYNPQYVGSVLCG 319 Query: 497 GNKAQR----FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS 552 K + I + G +GK+ + I +A +N N Sbjct: 320 WVKREFNKRNAIWLYGPATTGKTNIAEAIAHAVPFYGCVN-------------WTNENFP 366 Query: 553 LIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612 + ++ E +++ + K + GG + + P + Sbjct: 367 FNDCVDKMLIWWEEGKMTNKVVESA-KAILGGSAVRVDQKCKGSVCIEPTPVIITSNTDM 425 Query: 613 HLFVRNPDDAWWRRYIVIP-----FDKPIANRDASFAQKLETKYTLEAKKWF 659 + V R IP F ++++ K+ K E KW Sbjct: 426 CMIVDGNSTTMEHR---IPLEERMFQIVLSHKLEGNFGKISKKEVKEFFKWA 474 >gi|297527405|ref|YP_003669429.1| ATPase associated with various cellular activities AAA_5 [Staphylothermus hellenicus DSM 12710] gi|297256321|gb|ADI32530.1| ATPase associated with various cellular activities AAA_5 [Staphylothermus hellenicus DSM 12710] Length = 305 Score = 39.9 bits (91), Expect = 1.8, Method: Composition-based stats. Identities = 25/137 (18%), Positives = 44/137 (32%), Gaps = 4/137 (2%) Query: 512 SGKSTLMNLIKYAFGNQYVINA--EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569 SGKS + + VI A + + E+ P L L+ V+I E Sbjct: 86 SGKSAFILPCSENYDEYRVIGDFHPAMAMAKGFNEESFIPRPLLAALLLDTGVLIDEIRR 145 Query: 570 NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKH-LFVRNPDDAWWRRYI 628 ++E + + + Y + F N + + DA+ RR + Sbjct: 146 SNEDFQNLLLDIIDKRRIVIPEL-KKVYVQRGHGFQIIFTSNPLDIAQSDLSDAFLRRVV 204 Query: 629 VIPFDKPIANRDASFAQ 645 I F P + + Sbjct: 205 RIEFKYPAIEEEIEIVK 221 >gi|82468919|gb|ABB76814.1| REP [Duck parvovirus] Length = 627 Score = 39.9 bits (91), Expect = 1.8, Method: Composition-based stats. Identities = 32/232 (13%), Positives = 71/232 (30%), Gaps = 27/232 (11%) Query: 437 DLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLG 496 + + ++ + + T T ++ G + ++ ++ +Y + VG L G Sbjct: 262 NRQVKAALENARAEMLLTKTATDYLIG-KDPVLDITKNRIYQILKLNNYNPQYVGSILCG 320 Query: 497 GNKAQR----FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS 552 K + I + G +GK+ + I +A +N N Sbjct: 321 WVKREFNKRNAIWLYGPATTGKTNIAEAIAHAVPFYGCVN-------------WTNENFP 367 Query: 553 LIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612 + ++ E +++ + K + GG + + P + Sbjct: 368 FNDCVDKMLIWWEEGKMTNKVVESA-KAILGGSAVRVDQKCKGSVCIEPTPVIITSNTDM 426 Query: 613 HLFVRNPDDAWWRRYIVIP-----FDKPIANRDASFAQKLETKYTLEAKKWF 659 + V R IP F ++++ K+ K E KW Sbjct: 427 CMIVDGNSTTMEHR---IPLEERMFQIVLSHKLEGNFGKISKKEVKEFFKWA 475 >gi|242014262|ref|XP_002427810.1| Nesprin-1, putative [Pediculus humanus corporis] gi|212512279|gb|EEB15072.1| Nesprin-1, putative [Pediculus humanus corporis] Length = 7677 Score = 39.9 bits (91), Expect = 1.9, Method: Composition-based stats. Identities = 24/241 (9%), Positives = 68/241 (28%), Gaps = 15/241 (6%) Query: 166 SEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGS 225 EE V+ L ++ ++ ++ S ++F + Sbjct: 477 REEQVQQLLDQYKNFVSKNKIFQEFNKAFIDMQQVVEEYKREGDVDDRESLAIDQFMRNT 536 Query: 226 HDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRS 285 +D W V M + + +RW+ + E+ + + + + + Sbjct: 537 NDRWRSVSMELRCVQSMLEEVLAYWKRWNSSADEF-EKWLERAY-SMKDQPEDEKMEFFQ 594 Query: 286 TFTSLFYHHGKLIPK-GLLASRFSDAYNKAMFSIYKKGHFL----------YTADTKAWY 334 ++ + +L L + + + Y + + L Y + Sbjct: 595 DLSTWKDKNQQLNDTVSFLVATCEEPIANELRERYGRMNILWEQLFPSIKHYMKAGDLYK 654 Query: 335 KKDKNNVYIWSLTLDKITASIM--NFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYR 392 K + + L +A ++ E + +E + + + F + Sbjct: 655 HKKDYTLGLEKLQKWLRSAEKTLSATPINSSESMKAYGDELKKLSIELEEMEELFKEISK 714 Query: 393 R 393 + Sbjct: 715 K 715 >gi|254453017|ref|ZP_05066454.1| conserved hypothetical protein [Octadecabacter antarcticus 238] gi|198267423|gb|EDY91693.1| conserved hypothetical protein [Octadecabacter antarcticus 238] Length = 586 Score = 39.9 bits (91), Expect = 1.9, Method: Composition-based stats. Identities = 27/221 (12%), Positives = 65/221 (29%), Gaps = 17/221 (7%) Query: 423 DSSSRFLG-EQDGILDLETGQKVKPTKELYITKSTGTPFVEGE-------PSQEFLDLVS 474 D + + + +++ P + + L + Sbjct: 131 DDDGKAIAHCGNQLVEPGGRSLAPAEHRGKCIMIGAPPIAPPDNTFINPEEVEFLLSELK 190 Query: 475 GYFE---SEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVI 531 + + + L G + +++ G GSGKS LM + G Sbjct: 191 ALWGWKRDVDADIFLGWVAAAILGGFPAWRSHLYVYGSRGSGKSKLMEVAAGMLGEFGGS 250 Query: 532 NAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARL 591 + R +A P LI + + + ++ A ++M+GG+ Sbjct: 251 VLNDATEAGIRQSRNNQARPILIDEFEPDQSVRNGSKQDGMF--ALFRRMSGGEGGRVSR 308 Query: 592 NYGN-TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIP 631 + + ++ H+ + D + R+++I Sbjct: 309 GGSDHSAVSFRTLGAAYVTSINHIQLEPQDRS---RFVMID 346 >gi|328700677|ref|XP_003241346.1| PREDICTED: non-capsid protein NS-1-like [Acyrthosiphon pisum] Length = 615 Score = 39.9 bits (91), Expect = 2.0, Method: Composition-based stats. Identities = 28/158 (17%), Positives = 56/158 (35%), Gaps = 15/158 (9%) Query: 472 LVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVI 531 L+ + ++ ++ F + + L + + I +GK+ + + F N Sbjct: 440 LMYQFENNDGLICRFLQTLVNILDKKIPKRNSMLIHSPPSAGKNYFFDAVAAFFLNY--- 496 Query: 532 NAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARL 591 N S G R+VI +E N + + K+K++ GGD + Sbjct: 497 --------GMFGTANKTNNFSFSDGAGKRLVIWNEPN-YEVYHLEKMKELLGGDTTRVHV 547 Query: 592 NYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIV 629 Y N ++ N +L + D ++ R V Sbjct: 548 KYKNDVPLQGPP--IILLTNHYLSI-INDPSFKDRLSV 582 >gi|251771179|gb|EES51761.1| hypothetical protein UBAL3_95530031 [Leptospirillum ferrodiazotrophum] Length = 246 Score = 39.5 bits (90), Expect = 2.1, Method: Composition-based stats. Identities = 30/217 (13%), Positives = 60/217 (27%), Gaps = 13/217 (5%) Query: 338 KNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVE 397 V+ + ++ + + N+K W R Q + Sbjct: 22 NPVVFHEDSQEILELSGSKPSMLRLGDRCLTALGGRRTNDKGKDLGPDWEKAYLRLQEIC 81 Query: 398 ENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTG 457 + + G +F+ + + V+P + Sbjct: 82 QKKGTFFMERLRGPGLWLEDGKPFFHDGKKFVKTDKHMYVSDPRGFVEPEPGNLL----- 136 Query: 458 TPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGG-NKAQRFIHIRGVGGSGKST 516 E +Q F + + +E + AL GG + + + G G+GKST Sbjct: 137 ------ECAQIFYIQIYQAYG-KETATALLGFIVSALAGGAIPWRFHLWLSGPRGTGKST 189 Query: 517 LMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL 553 + +++ FG + S R P L Sbjct: 190 IWGILREIFGGYAIALDGKSSAAGIRQQIRASTRPVL 226 >gi|159480892|ref|XP_001698516.1| hypothetical protein CHLREDRAFT_113573 [Chlamydomonas reinhardtii] gi|158282256|gb|EDP08009.1| predicted protein [Chlamydomonas reinhardtii] Length = 223 Score = 39.5 bits (90), Expect = 2.1, Method: Composition-based stats. Identities = 23/167 (13%), Positives = 45/167 (26%), Gaps = 20/167 (11%) Query: 473 VSGYFESEEVMDYFTRCVGMAL------LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFG 526 E V + L G + R + + G G+GK+ L + G Sbjct: 3 FDDIAGCEAAKQLLHEAVALPLVIPEFFTGIREPWRGVLLHGPPGTGKTLLAKAVAGMVG 62 Query: 527 NQYVINAEASDIMQNRPPEAGKAN--PSLIRLMGSRIVIISETNENDEINAAKIKQMTGG 584 + + AS + R + L R ++ + E + ++ G Sbjct: 63 GAFFAVSPASLTSKWRGESEKLLSTLFELARANAPAVIFMDEIDAVGSARGSE------G 116 Query: 585 DCMTARLNYGNTYSESPASF----TPFIVPNKHLFVRNPDDAWWRRY 627 + +R + + + D A RR Sbjct: 117 EHEASRRFKAELLQQLDGMCSGRGVMLLAATNCP--WDLDPALRRRL 161 >gi|124378240|ref|YP_001029431.1| GfV-D3-ORF1 [Glypta fumiferanae ichnovirus] gi|124270647|dbj|BAF45568.1| GfV-D3-ORF1 [Glypta fumiferanae ichnovirus] Length = 493 Score = 39.5 bits (90), Expect = 2.1, Method: Composition-based stats. Identities = 20/115 (17%), Positives = 46/115 (40%), Gaps = 4/115 (3%) Query: 187 DKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVHHET-RGSSK 245 ++ K N N YT + + A + E ++ +D W V+ A++ Sbjct: 129 NEPPSKKMKMDENIGNLSYTKQSLKALVMDL-ESRHSEKYDLWRNVLWALNTCGLENGYD 187 Query: 246 GKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPK 300 +IA +SK+ S Y ++F TF+ + + + + + ++ + + Sbjct: 188 TLDIANEFSKRSSKY--KDFEDVKKTFESSDGTISQQYLNEISKVYQEDLHYMER 240 >gi|204324151|gb|ACI01073.1| putative non-structural protein [Dysaphis plantaginea densovirus] Length = 710 Score = 39.5 bits (90), Expect = 2.2, Method: Composition-based stats. Identities = 32/219 (14%), Positives = 70/219 (31%), Gaps = 29/219 (13%) Query: 429 LGEQDGILDLETGQKVKPTKELYITKSTG-----------TPFVEGEPSQEFLDLVSGYF 477 + ++ + + K T + Q +L+ F Sbjct: 475 VALRNWCARIREWSVSEFNDYYSSGKITPYFNAYSRDKKQVYYDVHTSVQIAEELLCYQF 534 Query: 478 ESE-EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEAS 536 +++ +++ F V + + + + +GK+ + + F N Sbjct: 535 DNDGDLISKFLYDVYAIVDKLVPKRNSMCVVSPPSAGKNFFFDAVASYFLNY-------- 586 Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG-N 595 N S G R+V+ +E N + + KIK++ GGD + Y + Sbjct: 587 ---GMFGTANKTNNFSWADGAGKRLVLWNEPN-YETFHVEKIKELLGGDTTRVHVKYKGD 642 Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK 634 + P F++ N L + D A+ R + + Sbjct: 643 QPLQGPP---IFLLTNNTLSI-CNDPAFADRLVTYEWKS 677 >gi|299142965|ref|ZP_07036091.1| VirE N- domain protein [Prevotella oris C735] gi|298575581|gb|EFI47461.1| VirE N- domain protein [Prevotella oris C735] Length = 292 Score = 39.5 bits (90), Expect = 2.2, Method: Composition-based stats. Identities = 30/218 (13%), Positives = 59/218 (27%), Gaps = 40/218 (18%) Query: 62 EQPLYAFDIDSKDEKTANTFKDTFEILHGTPIV----RIGQKPKILIPFRMNKEGIKKKK 117 L DID KD F D H P + R + FR Sbjct: 78 HSNLLCIDIDKKDNMGIAWFDDLKNEWHNIPQILYAGRSIRGKGWFAIFR--------IA 129 Query: 118 TTESTQGHLDIL----GCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYL 173 + + + L + + ++ + + P + D L ++ +E Sbjct: 130 YIDKHKAQFEALQRDFANSGLIIDKSCKDVSRMRFI-SYDPEPYVNVDATLYTKVWLE-- 186 Query: 174 FKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVV 233 P+ + + + + + G + ++D+W V Sbjct: 187 -----------------PKPTIHVSYSGSDMEQVEKCCRLIVDRGIDI-TATYDDWFHVG 228 Query: 234 MAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDT 271 A+ G+ S Q Y + K+D Sbjct: 229 AALASL---GESGRSSFYLVSSQNPKYKAAETDKKFDN 263 >gi|258453030|ref|ZP_05701023.1| conserved hypothetical protein [Staphylococcus aureus A5948] gi|257859240|gb|EEV82095.1| conserved hypothetical protein [Staphylococcus aureus A5948] Length = 489 Score = 39.5 bits (90), Expect = 2.2, Method: Composition-based stats. Identities = 30/147 (20%), Positives = 46/147 (31%), Gaps = 16/147 (10%) Query: 484 DYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP 543 + V G K I + G G GKST + G+ Y + + Sbjct: 164 KWMMGAVARIYQPGIKYDCMIILYGGQGVGKST---AVSKLGGHWYNQSIKTF------- 213 Query: 544 PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPAS 603 K + +L GS I I E + + IK R +YG P Sbjct: 214 ----KGDEVYKKLQGSWICEIEELSAFQKSTIEDIKGFISAIVDIYRASYGKRTERHPRQ 269 Query: 604 FTPFIVPNKHLFVRNPDDAWWRRYIVI 630 N + F+++ RR+ I Sbjct: 270 CVFVGTTNNYEFLKDQTG--NRRFFPI 294 >gi|218780049|ref|YP_002431367.1| ATPase AAA [Desulfatibacillum alkenivorans AK-01] gi|218761433|gb|ACL03899.1| AAA ATPase central domain protein [Desulfatibacillum alkenivorans AK-01] Length = 337 Score = 39.5 bits (90), Expect = 2.3, Method: Composition-based stats. Identities = 35/222 (15%), Positives = 69/222 (31%), Gaps = 34/222 (15%) Query: 419 SDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEP-------SQEFLD 471 + L+ S + ++G +T + E + + ++ L Sbjct: 47 EEALNFESNQVSNRNGCTRFKTDIPIPRDNESGFPLLSIKSYDHLWEELILPSETELILR 106 Query: 472 LVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVI 531 + F+ +++ G LL +K I + G+ G+GK+ +I G V Sbjct: 107 QIVQEFKESDILR------GYNLLPKSK----ILLCGIPGTGKTFTAQVISSVLGLPLVQ 156 Query: 532 NAEASDIMQNRPPEAGKANPSLIRLM-GSRIVIISETN-----ENDEINAAKIKQMTGGD 585 + I A + G +V+ E + +D +IK++ Sbjct: 157 IQFDAIISSYLGETATNLRKVFDFINSGIWVVLFDEFDIIGKNRDDHYEHGEIKRVVNN- 215 Query: 586 CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY 627 + F N H + D A WRR+ Sbjct: 216 -------FLQMIDSFEGESLIFAATNHHHIL---DPAIWRRF 247 >gi|225870195|ref|YP_002746142.1| phage protein [Streptococcus equi subsp. equi 4047] gi|225699599|emb|CAW93238.1| putative hypothetical phage protein [Streptococcus equi subsp. equi 4047] Length = 466 Score = 39.5 bits (90), Expect = 2.3, Method: Composition-based stats. Identities = 38/285 (13%), Positives = 85/285 (29%), Gaps = 36/285 (12%) Query: 459 PFVEGEPSQEFLDLVSGYFESEEVMDYFTRC--------VGMALLGGNKAQRFIHIRGVG 510 + + + + + +E+ + + R V K + + G Sbjct: 132 AYESWDHRERLAQVFQTWLGAEDSI-FVQRIAVMFFVGAVSKVFNPWVKFDYTLDLVGGQ 190 Query: 511 GSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN 570 G+GK+T + + E + L L IV E + Sbjct: 191 GAGKTTFLQ----------KVAVEWYTDSAKDFMDKDNYEIMLKSL----IVNDDEMVAS 236 Query: 571 DEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVI 630 + ++K ++ R +YG + P +F NK ++ + RR++ + Sbjct: 237 RKTTFDELKAFVTKTELSFRRSYGRRAEKFPKNFVIARTSNKVEYLGDKTG--ERRFLPV 294 Query: 631 PFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEEERQGT 690 + + D + + + W A KG + + ++ Sbjct: 295 -----LVDADQQLVKPFDMTDRDVLQLWG--EAVAIYKKGFTLTFDDDFEDELAVYKERF 347 Query: 691 ---DTYQAWIDDCCD-IGENLWEESHSLAKSYSEYREQELNYDRK 731 D ++ I D D + + WEE + + + R Sbjct: 348 TYKDEAESQIYDYLDMLVPDEWEEMSVVQQHQYTWAYFNNGSYRN 392 >gi|297180892|gb|ADI17096.1| hypothetical protein [uncultured gamma proteobacterium HF0070_03O15] Length = 328 Score = 39.5 bits (90), Expect = 2.4, Method: Composition-based stats. Identities = 18/107 (16%), Positives = 33/107 (30%), Gaps = 15/107 (14%) Query: 229 WIPVVMAVHHETRGSSKGKEIARRWSKQGSTYD------EENFNYKWDTFDFEEIGDTAK 282 W + +++E G +G E+ R WSK+ Y+ E+ +W Sbjct: 22 WWEIGAMINNELPG-IEGLELWREWSKKDPDYEHCWEDGEDPCAARWYAT-----WRNDG 75 Query: 283 KRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTAD 329 R L ++ P RF + + Y + Sbjct: 76 ARYNMAHLIDLADRVDPD---RKRFKQVGLDKLIEDVEAIPLRYKEE 119 >gi|254449344|ref|ZP_05062788.1| conserved hypothetical protein [gamma proteobacterium HTCC5015] gi|198261048|gb|EDY85349.1| conserved hypothetical protein [gamma proteobacterium HTCC5015] Length = 891 Score = 39.5 bits (90), Expect = 2.4, Method: Composition-based stats. Identities = 35/177 (19%), Positives = 62/177 (35%), Gaps = 17/177 (9%) Query: 467 QEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQR----FIHIRGVGGSGKSTLMNLIK 522 E+ D + F + V+ +G + Q F+ I G G+GKSTL+ + Sbjct: 516 PEWGDALLSAFREQGVIALAY-WLGTLFAEQIREQHKSYPFLEIVGEAGAGKSTLIEFLW 574 Query: 523 YAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNEN---DEINAAKIK 579 G + S A N + + + ++ E + + ++K Sbjct: 575 KLLGRSDYEGFDPS----KATLPARSRNFAQVSNLPVVLIESDRDQEGAKQRQFDWDELK 630 Query: 580 QMTGGDCMTAR--LNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK 634 G + AR N GN E P I N + N +A +R + + F + Sbjct: 631 TAYNGRSVRARGVKNGGNDTYEPPFRGAIVISQNAAV---NASEAIIQRIVHLTFTR 684 >gi|226292816|gb|EEH48236.1| arrestin [Paracoccidioides brasiliensis Pb18] Length = 573 Score = 39.5 bits (90), Expect = 2.4, Method: Composition-based stats. Identities = 21/190 (11%), Positives = 51/190 (26%), Gaps = 15/190 (7%) Query: 95 RIGQKPKILIPFRMNKE-GIKKKKTTESTQGHLDILGCGQY-FVAYNIHPKTKKEYTWTT 152 +G+ +R + + T ++ Q F + P+ K + + Sbjct: 166 TVGRPQFYKENYRGYADIKFLPIEPPRQTDTGVESYARRQQQFSKVSSIPEKKGLFQKSN 225 Query: 153 PPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITA 212 PP +++ P D P + + + Q E+ A Sbjct: 226 PPSLIDLDEEPPKFSVDARLPSPPIITCNEPFPL-RILVKKLNESSETIFLQMIQVELIA 284 Query: 213 FLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSK---------GKEIARRW---SKQGSTY 260 + + W+ + ++ + + R S ++ Sbjct: 285 YTHIRAHDLTRSESGSWVIISLSNMNIPLIDGNVPAGKEWKVDSSLWDRIPLPSSVAPSF 344 Query: 261 DEENFNYKWD 270 D N + +D Sbjct: 345 DTCNISRTYD 354 >gi|295661550|ref|XP_002791330.1| arrestin [Paracoccidioides brasiliensis Pb01] gi|226280892|gb|EEH36458.1| arrestin [Paracoccidioides brasiliensis Pb01] Length = 573 Score = 39.5 bits (90), Expect = 2.4, Method: Composition-based stats. Identities = 21/190 (11%), Positives = 51/190 (26%), Gaps = 15/190 (7%) Query: 95 RIGQKPKILIPFRMNKE-GIKKKKTTESTQGHLDILGCGQY-FVAYNIHPKTKKEYTWTT 152 +G+ +R + + T ++ Q F + P+ K + + Sbjct: 166 TVGRPQFYKENYRGYADIKFLPIEPPRQTDTGVESYARRQQQFSKVSSIPEKKGLFQKSN 225 Query: 153 PPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITA 212 PP +++ P D P + + + Q E+ A Sbjct: 226 PPSLIDLDEEPPKFSVDARLPSPPIITCNEPFPL-RILVKKLNESSETIFLQMIQVELIA 284 Query: 213 FLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSK---------GKEIARRW---SKQGSTY 260 + + W+ + ++ + + R S ++ Sbjct: 285 YTHIRAHDLTRSESGSWVIISLSNMNIPLIDGNVPAGKEWKVDSSLWDRIPLPSSVAPSF 344 Query: 261 DEENFNYKWD 270 D N + +D Sbjct: 345 DTCNISRTYD 354 >gi|225680547|gb|EEH18831.1| conserved hypothetical protein [Paracoccidioides brasiliensis Pb03] Length = 573 Score = 39.5 bits (90), Expect = 2.4, Method: Composition-based stats. Identities = 21/190 (11%), Positives = 51/190 (26%), Gaps = 15/190 (7%) Query: 95 RIGQKPKILIPFRMNKE-GIKKKKTTESTQGHLDILGCGQY-FVAYNIHPKTKKEYTWTT 152 +G+ +R + + T ++ Q F + P+ K + + Sbjct: 166 TVGRPQFYKENYRGYADIKFLPIEPPRQTDTGVESYARRQQQFSKVSSIPEKKGLFQKSN 225 Query: 153 PPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITA 212 PP +++ P D P + + + Q E+ A Sbjct: 226 PPSLIDLDEEPPKFSVDARLPSPPIITCNEPFPL-RILVKKLNESSETIFLQMIQVELIA 284 Query: 213 FLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSK---------GKEIARRW---SKQGSTY 260 + + W+ + ++ + + R S ++ Sbjct: 285 YTHIRAHDLTRSESGSWVIISLSNMNIPLIDGNVPAGKEWKVDSSLWDRIPLPSSVAPSF 344 Query: 261 DEENFNYKWD 270 D N + +D Sbjct: 345 DTCNISRTYD 354 >gi|227539429|ref|ZP_03969478.1| AAA family ATPase [Sphingobacterium spiritivorum ATCC 33300] gi|227240742|gb|EEI90757.1| AAA family ATPase [Sphingobacterium spiritivorum ATCC 33300] Length = 294 Score = 39.5 bits (90), Expect = 2.5, Method: Composition-based stats. Identities = 28/156 (17%), Positives = 47/156 (30%), Gaps = 16/156 (10%) Query: 504 IHIRGVGGSGKSTLMNLIK-YAFGNQYVINAEASDIMQNRPPE--------AGKANPSLI 554 I + G G+GK+ I + R A L Sbjct: 71 IILSGDAGTGKTISAEAIADRMLRELKKDGFFLKLSTRVRGEGLHGQMGNLVNDAFSELK 130 Query: 555 RLMGSRIVIISETNENDEINAAK-IKQMTGGDCMTARLNYGN--TYSESPASFTPFIVPN 611 G R + +E D I + + QM + E F+ N Sbjct: 131 NQAGKRRIAFLLIDEADAIASTRSTMQMHQEEKAAVNTLIQKIDELRELNGRAILFMSTN 190 Query: 612 KHLFVRNPDDAWWRRY-IVIPFDKPIANRDASFAQK 646 + F+ D+A RR I++ F++P + +K Sbjct: 191 RLHFL---DEAIIRRAAIILEFERPTFDERKQLFEK 223 >gi|17226300|gb|AAL37721.1|AF416726_1 nonstructural protein NS [goose parvovirus] Length = 627 Score = 39.5 bits (90), Expect = 2.5, Method: Composition-based stats. Identities = 31/232 (13%), Positives = 71/232 (30%), Gaps = 27/232 (11%) Query: 437 DLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLG 496 + + ++ + + T T ++ G + ++ ++ +Y + +G L G Sbjct: 262 NRQVKAALENARAEMLLTKTATDYLIG-KDPVLDITKNRVYQILKMNNYNPQYIGSILCG 320 Query: 497 GNKAQR----FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS 552 K + I + G +GK+ + I +A +N N Sbjct: 321 WVKREFNKRNAIWLYGPATTGKTNIAEAIAHAVPFYGCVN-------------WTNENFP 367 Query: 553 LIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612 + ++ E +++ + K + GG + + P + Sbjct: 368 FNDCVDKMLIWWEEEKMTNKVVESA-KAILGGSAVRVDQKCKGSVCIEPTPVIITSNTDM 426 Query: 613 HLFVRNPDDAWWRRYIVIP-----FDKPIANRDASFAQKLETKYTLEAKKWF 659 + V R IP F ++++ K+ K E KW Sbjct: 427 CMIVDGNSTTMEHR---IPLEERMFQIVLSHKLEPSFGKISKKEVREFFKWA 475 >gi|190888195|gb|ACE95852.1| Rep [Goose parvovirus] Length = 627 Score = 39.5 bits (90), Expect = 2.6, Method: Composition-based stats. Identities = 27/181 (14%), Positives = 53/181 (29%), Gaps = 26/181 (14%) Query: 488 RCVGMALLGGNKAQR----FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP 543 + +G L G K + I + G +GK+ + I +A +N Sbjct: 312 QYIGSILCGWVKREFNKRNAIWLYGPATTGKTNIAEAIAHAVPFYGCVN----------- 360 Query: 544 PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPAS 603 N + ++ E +++ + K + GG + + P Sbjct: 361 --WTNENFPFNDCVDKMLIWWEEGKMTNKVVESA-KAILGGSAVRVDQKCKGSVCTEPTP 417 Query: 604 FTPFIVPNKHLFVRNPDDAWWRRYIVIP-----FDKPIANRDASFAQKLETKYTLEAKKW 658 + + V R IP F ++++ K+ K E KW Sbjct: 418 VIITSNTDMCMIVDGNSTTMEHR---IPLEERMFQIVLSHKLEPSFGKISKKEVREFFKW 474 Query: 659 F 659 Sbjct: 475 A 475 >gi|60682881|ref|YP_213025.1| hypothetical protein BF3419 [Bacteroides fragilis NCTC 9343] gi|60494315|emb|CAH09110.1| conserved hypothetical protein [Bacteroides fragilis NCTC 9343] Length = 374 Score = 39.5 bits (90), Expect = 2.6, Method: Composition-based stats. Identities = 17/92 (18%), Positives = 35/92 (38%), Gaps = 14/92 (15%) Query: 623 WWRRYIVIPF-----DKPIANRDASFAQK--LETKYTLEAKK------WFLKGVKAYISK 669 +RR +PF + + NR + QK + + W + + Sbjct: 86 LFRRQRELPFGSKLQNHALNNRTNAEFQKFFPTADFVPIIRNLTNNRYWINENLLKIKVH 145 Query: 670 GLDVDIPEVCLKAKEEE-RQGTDTYQAWIDDC 700 G V+I ++ +E + D++Q +I+ C Sbjct: 146 GSIVNISNAVIEIIDEYVKAKQDSFQRFIEQC 177 >gi|296242587|ref|YP_003650074.1| ATPase [Thermosphaera aggregans DSM 11486] gi|296095171|gb|ADG91122.1| ATPase associated with various cellular activities AAA_5 [Thermosphaera aggregans DSM 11486] Length = 306 Score = 39.1 bits (89), Expect = 2.7, Method: Composition-based stats. Identities = 29/186 (15%), Positives = 58/186 (31%), Gaps = 19/186 (10%) Query: 489 CVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFG-------------NQYVINA-- 533 + + R + G G+GK+ + I Y + ++Y + Sbjct: 49 YIVYLTIASFMNNRPVLYEGPPGTGKTEIGEAILYLWSGKTPFILPCSENYDEYRVIGDF 108 Query: 534 -EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLN 592 A + + E+ P L L+ V+I E + E + + + Sbjct: 109 HPAMAMAKGFNEESFIPRPLLAALIMGTGVLIDEIRRSSEEFQNMLLDVIDKRRIIIPEL 168 Query: 593 YGNTYSESPASFTPFIVPNKHLFVRNP-DDAWWRRYIVIPFDKPIANRDASFAQKLETKY 651 YS+S F + N + DA+ RR + + F P + +L+ Sbjct: 169 -KKVYSQSGDEFQVVLTSNPLDIAQGELSDAFLRRVVRVEFKYPSVEEEYEIV-RLKLGS 226 Query: 652 TLEAKK 657 + Sbjct: 227 LFGKLR 232 >gi|309364236|emb|CAR98801.1| hypothetical protein CBG_27264 [Caenorhabditis briggsae AF16] Length = 401 Score = 39.1 bits (89), Expect = 2.8, Method: Composition-based stats. Identities = 32/162 (19%), Positives = 54/162 (33%), Gaps = 22/162 (13%) Query: 575 AAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYI------ 628 I ++ +T S+ F V FVR+ A +R + Sbjct: 76 ENSINRLVRFRNITLNNLEKLHQSQLIFDLNHFTVSGAVEFVRDISRAMEKRLMDSDEGT 135 Query: 629 ------VIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKA 682 +I F + + +K+ET W I +I E+ + A Sbjct: 136 TSCDMTLITFIEQEKPPEKKIQKKIETPEWFTILTW------TLIPNVGLPEISEMEMLA 189 Query: 683 KEE-ERQGTDTYQAWIDDCCDIGENLWEES--HSLAKSYSEY 721 E R+ D+ Q WI+D +I L E+ + S+Y Sbjct: 190 INELFRKEEDS-QKWIEDFNEITPLLPVEAIRATFYNRSSQY 230 >gi|195764992|gb|ACG50803.1| putative non-structural protein [Dysaphis plantaginea densovirus] Length = 710 Score = 39.1 bits (89), Expect = 2.8, Method: Composition-based stats. Identities = 32/219 (14%), Positives = 70/219 (31%), Gaps = 29/219 (13%) Query: 429 LGEQDGILDLETGQKVKPTKELYITKSTG-----------TPFVEGEPSQEFLDLVSGYF 477 + ++ + + K T + Q +L+ F Sbjct: 475 VALRNWCARIREWSVSEFNDYYSSGKITPYFNAYSRDKKQVYYDVQTSVQIAEELLCYQF 534 Query: 478 ESE-EVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEAS 536 +++ +++ F V + + + + +GK+ + + F N Sbjct: 535 DNDGDLISKFLYDVYAIVDKLVPKRNSMCVVSPPSAGKNFFFDAVASYFLNY-------- 586 Query: 537 DIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG-N 595 N S G R+V+ +E N + + KIK++ GGD + Y + Sbjct: 587 ---GMFGTANKTNNFSWADGAGKRLVLWNEPN-YETFHVEKIKELLGGDTTRVHVKYKGD 642 Query: 596 TYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK 634 + P F++ N L + D A+ R + + Sbjct: 643 QPLQGPP---IFLLTNNTLSI-CNDPAFADRLVTYEWKS 677 >gi|194100566|ref|YP_002003891.1| gp52 [Mycobacterium phage Nigel] gi|192758282|gb|ACF05055.1| gp52 [Mycobacterium phage Nigel] Length = 929 Score = 39.1 bits (89), Expect = 3.0, Method: Composition-based stats. Identities = 19/206 (9%), Positives = 43/206 (20%), Gaps = 31/206 (15%) Query: 35 KWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTFEI--LHGTP 92 W ++ + +I VG + D D+ + Sbjct: 122 TWSKKAEDAGEIAMAQPAAVNLAVEVGGSGVVVIDCDTAAQVDRWFEVAEIPEDARPAPT 181 Query: 93 IVRIGQKP---------------KILIPFRMNKEGIKKKKT-----TESTQGHLDILGCG 132 I+ GQ F + + + T IL Sbjct: 182 ILTPGQVGPDADINDPSTWAHADGGHFWFTVPDKYLPVLPRHLGAMTWGGDHGFAILWDR 241 Query: 133 QYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSII 192 +Y + ++ + + E + + + Sbjct: 242 RYVLIPPSTRPEGAY---------EQLGHVYDMPDWLGEAIMQAGERRVQRAELAAGDRA 292 Query: 193 PSKTWTNNNNRQYTNREITAFLSCFG 218 + + +R N + L G Sbjct: 293 ENPELATHIDRWAENVSWASILEPLG 318 >gi|984264|gb|AAA75285.1| NS1 [Goose parvovirus] Length = 461 Score = 39.1 bits (89), Expect = 3.0, Method: Composition-based stats. Identities = 31/232 (13%), Positives = 71/232 (30%), Gaps = 27/232 (11%) Query: 437 DLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLG 496 + + ++ + + T T ++ G + ++ ++ +Y + +G L G Sbjct: 96 NRQVKAALENARAEMLLTKTATDYLIG-KDPVLDITKNRVYQILKMNNYNPQYIGSILCG 154 Query: 497 GNKAQR----FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS 552 K + I + G +GK+ + I +A +N N Sbjct: 155 WVKREFNKRNAIWLYGPATTGKTNIAEAIAHAVPFYGCVN-------------WTNENFP 201 Query: 553 LIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612 + ++ E +++ + K + GG + + P + Sbjct: 202 FNDCVDKMLIWWEEGKMTNKVVESA-KAILGGSAVRVDQKCKGSVCIEPTPVIITSNTDM 260 Query: 613 HLFVRNPDDAWWRRYIVIP-----FDKPIANRDASFAQKLETKYTLEAKKWF 659 + V R IP F ++++ K+ K E KW Sbjct: 261 CMIVDGNSTTMEHR---IPLEERMFQIVLSHKLEPSFGKISKKEVREFFKWA 309 >gi|159146230|gb|ABW90578.1| virulence-associated protein [Bacteriophage APSE-2] Length = 378 Score = 39.1 bits (89), Expect = 3.1, Method: Composition-based stats. Identities = 22/152 (14%), Positives = 43/152 (28%), Gaps = 15/152 (9%) Query: 191 IIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVV--MAVHHETRGSSKGKE 248 ++ N T ++ + L ++ W+ + +A +T + K Sbjct: 183 DDLTRLVDLQNINDQTFEDLRSALWYPKILNQAENYPSWVDMGNRLAWFKDTHFEDEAKT 242 Query: 249 IARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFS 308 + WS + D E KW R+ + ++F K A R Sbjct: 243 MWLDWSSAAAKGDIEAAEAKWAELRA--------DRTGYQAIFSLAQKAGWVNPGAERLK 294 Query: 309 DAYNKAMFSIYKKGHFLYTADTKAWYKKDKNN 340 A + L + W +N Sbjct: 295 TAVATV--DEFDD---LTNTENSKWPTFKRNK 321 >gi|221057358|ref|XP_002261187.1| Tryptophan/threonine-rich antigen [Plasmodium knowlesi strain H] gi|194247192|emb|CAQ40592.1| Tryptophan/threonine-rich antigen, putative [Plasmodium knowlesi strain H] Length = 578 Score = 39.1 bits (89), Expect = 3.3, Method: Composition-based stats. Identities = 29/213 (13%), Positives = 62/213 (29%), Gaps = 17/213 (7%) Query: 147 EYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYT 206 +Y+W + LS ++ ++ + +++ I + + + Sbjct: 359 DYSWGEFNQSVENGKRIWLSNKEKDWEDWLRFMEKKWMHYNERMDIEYNSNLFEISEYWN 418 Query: 207 NREITAFLSCFGEEFYNGSHDEWIPV------VMAVH--HETRGSSKGKEIARRWSKQGS 258 +++ ++ GE+ +W+ V A E + + W Sbjct: 419 DQQWEKWIRTEGEQLMELDWKKWMYENKFSLDVWASKEWSEWKKEKITSWLFCDWKMNEQ 478 Query: 259 TYDEENFNYKWDTFDFEEI------GDTAKKRSTFTSLFYHHGKLI-PKGLLASRFSDAY 311 Y EE + KW F + R ++ H K + +S Sbjct: 479 KYWEEWESKKWRKFLYLGERRKWIKWKERTNREWEEWKYWVHKKDNVFVNNKRNCWSKWK 538 Query: 312 NKA--MFSIYKKGHFLYTADTKAWYKKDKNNVY 342 N+ MF + K K W + Y Sbjct: 539 NERRDMFDDWMKPFIEKWIKRKQWNVWKEERNY 571 >gi|159146220|gb|ABW90573.1| virulence-associated protein [Bacteriophage APSE-2] Length = 378 Score = 39.1 bits (89), Expect = 3.4, Method: Composition-based stats. Identities = 22/152 (14%), Positives = 43/152 (28%), Gaps = 15/152 (9%) Query: 191 IIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVV--MAVHHETRGSSKGKE 248 ++ N T ++ + L ++ W+ + +A +T + K Sbjct: 183 DDLTRLVDLQNINDQTFEDLRSALWYPKILNQAENYPSWVDMGNRLAWFKDTHFEDEAKT 242 Query: 249 IARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFS 308 + WS + D E KW R+ + ++F K A R Sbjct: 243 MWLDWSSAAAKGDIEAAEAKWAELRA--------DRTGYQAIFSLAQKAGWVNPGAERLK 294 Query: 309 DAYNKAMFSIYKKGHFLYTADTKAWYKKDKNN 340 A + L + W +N Sbjct: 295 TAVATV--DEFDD---LTNTENSKWPTFKRNK 321 >gi|15625518|gb|AAL04136.1|AF410775_12 unknown [Staphylococcus aureus subsp. aureus COL] Length = 474 Score = 39.1 bits (89), Expect = 3.4, Method: Composition-based stats. Identities = 37/188 (19%), Positives = 55/188 (29%), Gaps = 34/188 (18%) Query: 484 DYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP 543 + V G K I + G G GKST + G+ Y + + Sbjct: 153 KWMMGAVARIYQPGIKYDSMIILYGGQGVGKST---AVSKLGGHWYNQSIKTF------- 202 Query: 544 PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPAS 603 K + +L GS I I E + + IK R +YG P Sbjct: 203 ----KGDEVYKKLQGSWICEIEELSAFQKSTIEDIKGFISAIVDIYRASYGKRTERHPRQ 258 Query: 604 FTPFIVPNKHLFVRNPDDAWWRRYIVI----------PFD--------KPIANRDASFAQ 645 N + F+++ RR+ I PFD + A F + Sbjct: 259 CVFVGTTNNYEFLKDQTG--NRRFFPITTDKNKATKSPFDDLTPDVVQQMFAEAKVYFDE 316 Query: 646 KLETKYTL 653 K L Sbjct: 317 DPTDKALL 324 >gi|282920040|ref|ZP_06327768.1| hypothetical protein SASG_02682 [Staphylococcus aureus subsp. aureus C427] gi|282316211|gb|EFB46591.1| hypothetical protein SASG_02682 [Staphylococcus aureus subsp. aureus C427] Length = 489 Score = 38.7 bits (88), Expect = 3.5, Method: Composition-based stats. Identities = 34/175 (19%), Positives = 54/175 (30%), Gaps = 22/175 (12%) Query: 484 DYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP 543 + V G K I + G G GKST + G+ Y + + Sbjct: 164 KWMMGAVARIYQPGIKYDSMIILYGGQGVGKST---AVSKLGGHWYNQSIKTF------- 213 Query: 544 PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPAS 603 K + +L GS I I E + + IK R +YG P Sbjct: 214 ----KGDEVYKKLQGSWICEIEELSAFQKSTIEDIKGFISAIVDIYRASYGKRTERHPRQ 269 Query: 604 FTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK------PIANRDASFAQKLETKYT 652 N + F+++ RR+ I DK P + Q++ + Sbjct: 270 CVFVGTTNNYEFLKDQTG--NRRFFPITTDKNKATKSPFDDLTPDVVQQMFAEAK 322 >gi|57650170|ref|YP_185768.1| hypothetical protein SACOL0897 [Staphylococcus aureus subsp. aureus COL] gi|282928953|ref|ZP_06336541.1| conserved hypothetical protein [Staphylococcus aureus A9765] gi|57284356|gb|AAW36450.1| conserved hypothetical protein [Staphylococcus aureus subsp. aureus COL] gi|282591871|gb|EFB96912.1| conserved hypothetical protein [Staphylococcus aureus A9765] Length = 485 Score = 38.7 bits (88), Expect = 3.5, Method: Composition-based stats. Identities = 37/188 (19%), Positives = 55/188 (29%), Gaps = 34/188 (18%) Query: 484 DYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP 543 + V G K I + G G GKST + G+ Y + + Sbjct: 164 KWMMGAVARIYQPGIKYDSMIILYGGQGVGKST---AVSKLGGHWYNQSIKTF------- 213 Query: 544 PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPAS 603 K + +L GS I I E + + IK R +YG P Sbjct: 214 ----KGDEVYKKLQGSWICEIEELSAFQKSTIEDIKGFISAIVDIYRASYGKRTERHPRQ 269 Query: 604 FTPFIVPNKHLFVRNPDDAWWRRYIVI----------PFD--------KPIANRDASFAQ 645 N + F+++ RR+ I PFD + A F + Sbjct: 270 CVFVGTTNNYEFLKDQTG--NRRFFPITTDKNKATKSPFDDLTPDVVQQMFAEAKVYFDE 327 Query: 646 KLETKYTL 653 K L Sbjct: 328 DPTDKALL 335 >gi|221141895|ref|ZP_03566388.1| hypothetical protein SauraJ_09730 [Staphylococcus aureus subsp. aureus str. JKD6009] gi|304381549|ref|ZP_07364199.1| virulence-associated protein E [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|269940401|emb|CBI48778.1| pathogenicity island protein [Staphylococcus aureus subsp. aureus TW20] gi|302750728|gb|ADL64905.1| pathogenicity island protein [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304339912|gb|EFM05856.1| virulence-associated protein E [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|329314704|gb|AEB89117.1| Pathogenicity island protein [Staphylococcus aureus subsp. aureus T0131] Length = 485 Score = 38.7 bits (88), Expect = 3.6, Method: Composition-based stats. Identities = 34/175 (19%), Positives = 54/175 (30%), Gaps = 22/175 (12%) Query: 484 DYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP 543 + V G K I + G G GKST + G+ Y + + Sbjct: 164 KWMMGAVARIYQPGIKYDSMIILYGGQGVGKST---AVSKLGGHWYNQSIKTF------- 213 Query: 544 PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPAS 603 K + +L GS I I E + + IK R +YG P Sbjct: 214 ----KGDEVYKKLQGSWICEIEELSAFQKSTIEDIKGFISAIVDIYRASYGKRTERHPRQ 269 Query: 604 FTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK------PIANRDASFAQKLETKYT 652 N + F+++ RR+ I DK P + Q++ + Sbjct: 270 CVFVGTTNNYEFLKDQTG--NRRFFPITTDKNKATKSPFDDLTPDVVQQMFAEAK 322 >gi|190888192|gb|ACE95850.1| Rep [Goose parvovirus] Length = 627 Score = 38.7 bits (88), Expect = 3.6, Method: Composition-based stats. Identities = 31/232 (13%), Positives = 71/232 (30%), Gaps = 27/232 (11%) Query: 437 DLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLG 496 + + ++ + + T T ++ G + ++ ++ +Y + +G L G Sbjct: 262 NRQVKAALENARAEMLLTKTATDYLIG-KDPVLDITKNRVYQILKMNNYNPQYIGSILCG 320 Query: 497 GNKAQR----FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS 552 K + I + G +GK+ + I +A +N N Sbjct: 321 WVKREFNKRNAIWLYGPATTGKTNIAEAIAHAVPFYGCVN-------------WTNENFP 367 Query: 553 LIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612 + ++ E +++ + K + GG + + P + Sbjct: 368 FNDCVDKMLIWWEEGKMTNKVVESA-KAILGGSAVRVDQKCKGSVCIEPTPVIITSNTDM 426 Query: 613 HLFVRNPDDAWWRRYIVIP-----FDKPIANRDASFAQKLETKYTLEAKKWF 659 + V R IP F ++++ K+ K E KW Sbjct: 427 CMIVDGNSTTMEHR---IPLEERMFQIVLSHKLEPSFGKISKKEVREFFKWA 475 >gi|160415349|gb|ABX38993.1| non-structural protein [Goose parvovirus] Length = 627 Score = 38.7 bits (88), Expect = 3.7, Method: Composition-based stats. Identities = 31/232 (13%), Positives = 71/232 (30%), Gaps = 27/232 (11%) Query: 437 DLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLG 496 + + ++ + + T T ++ G + ++ ++ +Y + +G L G Sbjct: 262 NRQVKAALENARAEMLLTKTATDYLIG-KDPVLDITKNRVYQILKMNNYNPQYIGSILCG 320 Query: 497 GNKAQR----FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS 552 K + I + G +GK+ + I +A +N N Sbjct: 321 WVKREFNKRNAIWLYGPATTGKTNIAEAIAHAVPFYGCVN-------------WTNENFP 367 Query: 553 LIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612 + ++ E +++ + K + GG + + P + Sbjct: 368 FNDCVDKMLIWWEEGKMTNKVVESA-KAILGGSAVRVDQKCKGSVCIEPTPVIITSNTDM 426 Query: 613 HLFVRNPDDAWWRRYIVIP-----FDKPIANRDASFAQKLETKYTLEAKKWF 659 + V R IP F ++++ K+ K E KW Sbjct: 427 CMIVDGNSTTMEHR---IPLEERMFQIVLSHKLEPSFGKISKKEVREFFKWA 475 >gi|154201543|gb|ABS71119.1| NS1 [Goose parvovirus] Length = 627 Score = 38.7 bits (88), Expect = 3.7, Method: Composition-based stats. Identities = 31/232 (13%), Positives = 71/232 (30%), Gaps = 27/232 (11%) Query: 437 DLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLG 496 + + ++ + + T T ++ G + ++ ++ +Y + +G L G Sbjct: 262 NRQVKAALENARAEMLLTKTATDYLIG-KDPVLDITKNRVYQILKMNNYNPQYIGSILCG 320 Query: 497 GNKAQR----FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS 552 K + I + G +GK+ + I +A +N N Sbjct: 321 WVKREFNKRNAIWLYGPATTGKTNIAEAIAHAVPFYGCVN-------------WTNENFP 367 Query: 553 LIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612 + ++ E +++ + K + GG + + P + Sbjct: 368 FNDCVDKMLIWWEEGKMTNKVVESA-KAILGGSAVRVDQKCKGSVCIEPTPVIITSNTDM 426 Query: 613 HLFVRNPDDAWWRRYIVIP-----FDKPIANRDASFAQKLETKYTLEAKKWF 659 + V R IP F ++++ K+ K E KW Sbjct: 427 CMIVDGNSTTMEHR---IPLEERMFQIVLSHKLEPSFGKISKKEVREFFKWA 475 >gi|315658818|ref|ZP_07911685.1| virulence-associated protein E [Staphylococcus lugdunensis M23590] gi|315495942|gb|EFU84270.1| virulence-associated protein E [Staphylococcus lugdunensis M23590] Length = 488 Score = 38.7 bits (88), Expect = 3.7, Method: Composition-based stats. Identities = 34/175 (19%), Positives = 54/175 (30%), Gaps = 22/175 (12%) Query: 484 DYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP 543 + V G K I + G G GKST + G+ Y + + Sbjct: 164 KWMMGAVARLYQPGIKYDCMIILYGGQGVGKST---AVSKLGGHWYNQSIKTF------- 213 Query: 544 PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPAS 603 K + +L GS I I E + + IK R +YG P Sbjct: 214 ----KGDEVYKKLQGSWICEIEELSAFQKSTIEDIKGFISAIVDIYRASYGKRTERHPRQ 269 Query: 604 FTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK------PIANRDASFAQKLETKYT 652 N + F+++ RR+ I DK P + Q++ + Sbjct: 270 CVFVGTTNNYEFLKDQTG--NRRFFPITTDKNKATKSPFDDLTPDVVQQMFAEAK 322 >gi|9628650|ref|NP_043514.1| REP [Goose parvovirus] gi|1113796|gb|AAA83229.1| REP [Goose parvovirus] Length = 627 Score = 38.7 bits (88), Expect = 3.7, Method: Composition-based stats. Identities = 31/232 (13%), Positives = 71/232 (30%), Gaps = 27/232 (11%) Query: 437 DLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLG 496 + + ++ + + T T ++ G + ++ ++ +Y + +G L G Sbjct: 262 NRQVKAALENARAEMLLTKTATDYLIG-KDPVLDITKNRVYQILKMNNYNPQYIGSILCG 320 Query: 497 GNKAQR----FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS 552 K + I + G +GK+ + I +A +N N Sbjct: 321 WVKREFNKRNAIWLYGPATTGKTNIAEAIAHAVPFYGCVN-------------WTNENFP 367 Query: 553 LIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612 + ++ E +++ + K + GG + + P + Sbjct: 368 FNDCVDKMLIWWEEGKMTNKVVESA-KAILGGSAVRVDQKCKGSVCIEPTPVIITSNTDM 426 Query: 613 HLFVRNPDDAWWRRYIVIP-----FDKPIANRDASFAQKLETKYTLEAKKWF 659 + V R IP F ++++ K+ K E KW Sbjct: 427 CMIVDGNSTTMEHR---IPLEERMFQIVLSHKLEPSFGKISKKEVREFFKWA 475 >gi|329732264|gb|EGG68614.1| Virulence-associated protein E [Staphylococcus aureus subsp. aureus 21193] Length = 465 Score = 38.7 bits (88), Expect = 3.8, Method: Composition-based stats. Identities = 34/175 (19%), Positives = 54/175 (30%), Gaps = 22/175 (12%) Query: 484 DYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP 543 + V G K I + G G GKST + G+ Y + + Sbjct: 140 KWMMGAVARIYQPGIKYDSMIILYGGQGVGKST---AVSKLGGHWYNQSIKTF------- 189 Query: 544 PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPAS 603 K + +L GS I I E + + IK R +YG P Sbjct: 190 ----KGDEVYKKLQGSWICEIEELSAFQKSTIEDIKGFISAIVDIYRASYGKRTERHPRQ 245 Query: 604 FTPFIVPNKHLFVRNPDDAWWRRYIVIPFDK------PIANRDASFAQKLETKYT 652 N + F+++ RR+ I DK P + Q++ + Sbjct: 246 CVFVGTTNNYEFLKDQTG--NRRFFPITTDKNKATKSPFDDLTPDVVQQMFAEAK 298 >gi|15828792|ref|NP_326152.1| oligoendopeptidase F [Mycoplasma pulmonis UAB CTIP] gi|18202665|sp|Q98QP0|PEPF_MYCPU RecName: Full=Oligoendopeptidase F homolog gi|14089735|emb|CAC13494.1| OLIGOENDOPEPTIDASE F [Mycoplasma pulmonis] Length = 613 Score = 38.7 bits (88), Expect = 3.9, Method: Composition-based stats. Identities = 41/349 (11%), Positives = 102/349 (29%), Gaps = 29/349 (8%) Query: 151 TTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREI 210 ++ +E +++ ++ +++ + K KK + + N E+ Sbjct: 111 IGDENQRILEHEEKITKWLLDPRLASYKKALDFVFKSKKHRLSKEVEDYLIKVSRGNIEL 170 Query: 211 TAFLSCFGEEFYNGSH----DEWIPVVMAVHHETRGSSKGKE-----IARRWSKQGSTYD 261 + + D + + + + E W+K + + Sbjct: 171 YKVYGILTNSELDYGYALSSDGKRKIEINLSNRFNLLKDQDENIRKTTYLNWNKASAKHK 230 Query: 262 EENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAY-NKAMFSIYK 320 E + + F A+ S+ T + + + LL + + NK +F Y Sbjct: 231 ETLSSLLYQHFSKLSADALARGYSS-TVNSFLFEDQVDEKLLKNLYDKVSSNKKVFQKYY 289 Query: 321 KGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNS 380 + + K +++K + I ++ EE +D S Sbjct: 290 QNY-------KKFFEKKNSKQME----AWDIYLPLVVVDEKYS------IEEAQDLVLKS 332 Query: 381 KSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLET 440 P ++ ++ +G+ ++ +D + DG L+ + Sbjct: 333 LEPMGSEYISKVKEAFSSRWVDYLPVKNKRSGAYSIGSTHGIDKKFILMNF-DGTLNSVS 391 Query: 441 GQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRC 489 + ++ S T FL ++ F + DY Sbjct: 392 TLSHEMGHSMHSYFSDKTQPQSLSSYPIFLAEIASIFNELMLKDYLLEV 440 >gi|190888198|gb|ACE95854.1| Rep [Goose parvovirus] Length = 627 Score = 38.7 bits (88), Expect = 3.9, Method: Composition-based stats. Identities = 31/232 (13%), Positives = 71/232 (30%), Gaps = 27/232 (11%) Query: 437 DLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLG 496 + + ++ + + T T ++ G + ++ ++ +Y + +G L G Sbjct: 262 NRQVKAALENARAEMLLTKTATDYLIG-KDPVLDITKNRVYQILKMNNYNPQYIGSILCG 320 Query: 497 GNKAQR----FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS 552 K + I + G +GK+ + I +A +N N Sbjct: 321 WVKREFNKRNAIWLYGPATTGKTNIAEAIAHAVPFYGCVN-------------WTNENFP 367 Query: 553 LIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612 + ++ E +++ + K + GG + + P + Sbjct: 368 FNDCVDKMLIWWEEGKMTNKVVESA-KAILGGSAVRVDQKCKGSVCIEPTPVIITSNTDM 426 Query: 613 HLFVRNPDDAWWRRYIVIP-----FDKPIANRDASFAQKLETKYTLEAKKWF 659 + V R IP F ++++ K+ K E KW Sbjct: 427 CMIVDGNSTTMEHR---IPLEERMFQIVLSHKLEPSFGKISKKEVREFFKWA 475 >gi|291286215|ref|YP_003503031.1| hypothetical protein Dacet_0273 [Denitrovibrio acetiphilus DSM 12809] gi|290883375|gb|ADD67075.1| hypothetical protein Dacet_0273 [Denitrovibrio acetiphilus DSM 12809] Length = 203 Score = 38.7 bits (88), Expect = 4.1, Method: Composition-based stats. Identities = 20/173 (11%), Positives = 50/173 (28%), Gaps = 19/173 (10%) Query: 466 SQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF 525 + F D + +E+ L + + G G+GK++ I Sbjct: 1 MKTFNDFLFTSELKKELK--------YLLDTPERIPSPLCFYGRPGNGKTSFAEYIAKTL 52 Query: 526 GNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGD 585 ++ N + G ++ L+R + + + + ++E+ + I Sbjct: 53 CSEVC------YYDMNEYKKNGASSGELLRAVNNYASMATLSDESKPLGKCIILDEWHNA 106 Query: 586 CMTARLNYGNTYSESPASFTPFIVPN-----KHLFVRNPDDAWWRRYIVIPFD 633 + + Y + + + + A R I F+ Sbjct: 107 THSQQDAYKVPFETYSQKANVLFILCLNTDWELPIEKALSPAIKSRCHCISFN 159 >gi|85057689|ref|YP_456605.1| ATP-dependent Zn protease [Aster yellows witches'-broom phytoplasma AYWB] gi|84789794|gb|ABC65526.1| ATP-dependent Zn protease [Aster yellows witches'-broom phytoplasma AYWB] Length = 701 Score = 38.7 bits (88), Expect = 4.1, Method: Composition-based stats. Identities = 41/333 (12%), Positives = 92/333 (27%), Gaps = 36/333 (10%) Query: 363 KEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLL 422 K+ + + ++ + SKS + T++R N Q L+ + + + Sbjct: 149 KQTLELIEQKKQLLTTKSKSKEQFKETNFRIIKNNNNLFITKKIQGLQKTMALNDANKNI 208 Query: 423 DSSSRFLGEQD-------GILDLETGQKVKPT-------KELYITKSTGTPFVEGEPSQE 468 + + DL ++ +E + + + Sbjct: 209 IKDLMIQNKDNTEEFQKLKSYDLFLDGQLIHFDKQIKQLQEEIKSLQNNISYHSPKQKVM 268 Query: 469 FLDL--VSGYFES-EEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF 525 F D+ + E E++++YF + R + G G+GKS L+ + Sbjct: 269 FSDIYGLKQEKEELEDLIEYFQDDDFDMVNFDKVIPRGYLLYGPPGTGKSFLIEALCNEL 328 Query: 526 GNQYVINAEASDIMQNRPPEAGKANPSL---IRLMGSRIVIISETNENDEINAAKIKQMT 582 G Y++ E S + E + + I+ I E + T Sbjct: 329 GTHYIV-LEPSRFEKTYVGEGNEELEKIWQEAESHKKTIIFIDEIS-GLANREDNQSNKT 386 Query: 583 GGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYIVIPFDKPIANRDAS 642 + + L + + S N + D A R+ Sbjct: 387 SINIVNNLLTKLDGFKRSDKKIVLMGATNHLDKI---DSALRSRFS--------KEIKID 435 Query: 643 FAQKLETKYTLEAKKWFLKGVKAYISKGLDVDI 675 + ++ + K + + Sbjct: 436 LLKD---DEIEGFLQFLVTDYKIIYQTYIHLKE 465 >gi|123449352|ref|XP_001313396.1| ATPase, AAA family protein [Trichomonas vaginalis G3] gi|121895278|gb|EAY00467.1| ATPase, AAA family protein [Trichomonas vaginalis G3] Length = 454 Score = 38.7 bits (88), Expect = 4.1, Method: Composition-based stats. Identities = 29/158 (18%), Positives = 46/158 (29%), Gaps = 13/158 (8%) Query: 493 ALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS 552 G + I + G G+GKS L + + SD+ E+ K S Sbjct: 169 MFKGPTVPWKGILLYGPPGTGKSFLAKAVAGEANQSTFLTVSTSDLTSKWVGESEKLIKS 228 Query: 553 LIRLMGSRIVIISETNENDEI--NAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVP 610 L + I +E D + + + G M + I Sbjct: 229 LFQTARQSKPSIVFIDEIDSLVGDRGEDNSTEAGRRMKTEFLIQMDGVGVDNTGIIIIAA 288 Query: 611 NKHLFVRNPDDAWWRRYIVIPFDKPI----ANRDASFA 644 D A RR F+K + ++DA A Sbjct: 289 TNLP--WAIDPAMRRR-----FEKRVYVPLPDKDARMA 319 >gi|251795707|ref|YP_003010438.1| glycoside hydrolase family 43 [Paenibacillus sp. JDR-2] gi|247543333|gb|ACT00352.1| glycoside hydrolase family 43 [Paenibacillus sp. JDR-2] Length = 298 Score = 38.7 bits (88), Expect = 4.2, Method: Composition-based stats. Identities = 13/138 (9%), Positives = 36/138 (26%), Gaps = 5/138 (3%) Query: 57 VCGVGEQPLYAFDIDSKDEKTANTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKK 116 G A D D + F +++ + + + Sbjct: 118 PTGEWNNGR-AIDADVIVHEDCLLL--YFATRDPKGEIQMQGVAAAPLHSEYGQADWTQI 174 Query: 117 KTTESTQGHLDILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKF 176 + + ++ G+ A +H + + Y + + + + D + + Sbjct: 175 CSESILKP--ELDWEGKCIEAAGMHKRNGQLYMFYAGAYNNEPQQIGCAVSRDGVHWERL 232 Query: 177 FQEITVPLVKDKKSIIPS 194 F E +P + Sbjct: 233 FTEPLLPCGEPGSWNSSE 250 >gi|159146222|gb|ABW90574.1| virulence-associated protein [Bacteriophage APSE-2] gi|159146224|gb|ABW90575.1| virulence-associated protein [Bacteriophage APSE-2] gi|159146226|gb|ABW90576.1| virulence-associated protein [Bacteriophage APSE-2] Length = 385 Score = 38.7 bits (88), Expect = 4.3, Method: Composition-based stats. Identities = 23/158 (14%), Positives = 43/158 (27%), Gaps = 16/158 (10%) Query: 186 KDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVV--MAVHHETRGS 243 ++ N T ++ + L ++ W+ + +A +TR Sbjct: 184 PKTADDDLTRLVDLQNINDQTFEDLRSALWYPKILNQAENYPSWVDMGNRLAWFKDTRFE 243 Query: 244 SKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLL 303 + K + WS + D E KW R+ + ++F K Sbjct: 244 DEAKTMWLDWSSAAAKGDIEAAEAKWAELRA--------DRTGYQAIFSLAQKAGWVNPG 295 Query: 304 ASRFSDAYNKA-MFSIYKKGHFLYTADTKAWYKKDKNN 340 A R A F + W +N Sbjct: 296 AERLKTAVATVDEFDDLTDPT-----ENSKWPTFKRNR 328 >gi|15923781|ref|NP_371315.1| hypothetical protein SAV0791 [Staphylococcus aureus subsp. aureus Mu50] gi|156979118|ref|YP_001441377.1| hypothetical protein SAHV_0787 [Staphylococcus aureus subsp. aureus Mu3] gi|255005581|ref|ZP_05144182.2| hypothetical protein SauraM_03900 [Staphylococcus aureus subsp. aureus Mu50-omega] gi|14246560|dbj|BAB56953.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu50] gi|156721253|dbj|BAF77670.1| hypothetical protein [Staphylococcus aureus subsp. aureus Mu3] Length = 489 Score = 38.7 bits (88), Expect = 4.3, Method: Composition-based stats. Identities = 30/147 (20%), Positives = 46/147 (31%), Gaps = 16/147 (10%) Query: 484 DYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP 543 + V G K I + G G GKST + G+ Y + + Sbjct: 164 KWMMGAVARIYQPGIKYDSMIILYGGQGVGKST---AVSKLGGHWYNQSIKTF------- 213 Query: 544 PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPAS 603 K + +L GS I I E + + IK R +YG P Sbjct: 214 ----KGDEVYKKLQGSWICEIEELSAFQKSTIEDIKGFISAIVDIYRASYGKRTERHPRQ 269 Query: 604 FTPFIVPNKHLFVRNPDDAWWRRYIVI 630 N + F+++ RR+ I Sbjct: 270 CVFVGTTNNYEFLKDQTG--NRRFFPI 294 >gi|325288111|ref|YP_004263901.1| hypothetical protein Celly_3213 [Cellulophaga lytica DSM 7489] gi|324323565|gb|ADY31030.1| hypothetical protein Celly_3213 [Cellulophaga lytica DSM 7489] Length = 583 Score = 38.7 bits (88), Expect = 4.4, Method: Composition-based stats. Identities = 19/100 (19%), Positives = 35/100 (35%), Gaps = 3/100 (3%) Query: 173 LFKFFQEIT-VPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIP 231 + K F + + K+ + TN + E GS+ W Sbjct: 1 MTKIFNPKDWLEVPKEPTKPKSNTATTNVVAVADNDIESYISAIEQSGTDITGSYATWRD 60 Query: 232 VVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDT 271 + A+ E R G++ R SK + YD + + ++D Sbjct: 61 LGFALAEEYR--ETGRDYFHRISKNYAGYDAKECDAQFDK 98 >gi|321473310|gb|EFX84278.1| hypothetical protein DAPPUDRAFT_209675 [Daphnia pulex] Length = 443 Score = 38.3 bits (87), Expect = 4.6, Method: Composition-based stats. Identities = 26/167 (15%), Positives = 44/167 (26%), Gaps = 21/167 (12%) Query: 494 LLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAG---KAN 550 G + I + G G+GKS L + N + +SD++ E+ + Sbjct: 159 FTGKRTPWKGILLFGPPGTGKSYLAKAVATEANNSTFFSVSSSDLVSKWLGESEKLVRNL 218 Query: 551 PSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVP 610 L R IV I E + + + + + Sbjct: 219 FELARAHKPSIVFIDEIDSLCSTRSEN--ESESARRIKTEFLIQMQGVGKDQQGILVLAA 276 Query: 611 NKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKK 657 +V D A RR F+K I + Sbjct: 277 TNIPWV--LDSAIRRR-----FEKRI---------YIPLPEEPARLN 307 >gi|159146232|gb|ABW90579.1| virulence-associated protein [Bacteriophage APSE-2] Length = 385 Score = 38.3 bits (87), Expect = 4.6, Method: Composition-based stats. Identities = 23/158 (14%), Positives = 43/158 (27%), Gaps = 16/158 (10%) Query: 186 KDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVV--MAVHHETRGS 243 ++ N T ++ + L ++ W+ + +A +TR Sbjct: 184 PKTADDDLTRLVDLQNINDQTFEDLRSALWYPKILNQAENYPSWVDMGNRLAWFKDTRFE 243 Query: 244 SKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLL 303 + K + WS + D E KW R+ + ++F K Sbjct: 244 DEAKTMWLDWSSAAAKGDIEAAEAKWAELRA--------DRTGYQAIFSLAQKAGWVNPG 295 Query: 304 ASRFSDAYNKA-MFSIYKKGHFLYTADTKAWYKKDKNN 340 A R A F + W +N Sbjct: 296 AERLKTAVATVDEFDDLTDPT-----ENSKWPTFKRNK 328 >gi|115803072|ref|XP_783803.2| PREDICTED: similar to Psmc6 protein [Strongylocentrotus purpuratus] gi|115934021|ref|XP_001193421.1| PREDICTED: similar to Psmc6 protein [Strongylocentrotus purpuratus] Length = 501 Score = 38.3 bits (87), Expect = 4.6, Method: Composition-based stats. Identities = 33/300 (11%), Positives = 85/300 (28%), Gaps = 32/300 (10%) Query: 343 IWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNV------ 396 ++ ++ + + + + E + +L E E N + T + + Sbjct: 119 VYHMSHEDPGDISYSAIGGLAEQIRELREVIELPLLNPELFERVGITPPKGCLLYGAPGT 178 Query: 397 EENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKST 456 + A++ A L+A + ++S ++D ++GE ++ + Sbjct: 179 GKTLLARAVASQLDANFLKVVSSAIVDK---YIGESARLIREMFAYARDHEPCVVFMDEI 235 Query: 457 GTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLG-------GNKAQRFIHIRGV 509 G E+ + + LL G + + G Sbjct: 236 DAIGG--------RRFSEGTSADREIQRTLMEVIELPLLNPELFERVGITPPKGCLLYGA 287 Query: 510 GGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKAN--PSLIRLMGSRIVIISET 567 G+GK+ L + ++ ++ + + A + R +V + E Sbjct: 288 PGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGESARLIREMFAYARDHEPCVVFMDEI 347 Query: 568 NE--NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWR 625 + + + L ++ + N+ + D A R Sbjct: 348 DAIGGRRFSEGTSADREIQRTLM-ELLNQMDGFDTLGKVKIIMATNRPDTL---DPALLR 403 >gi|18266765|gb|AAL67615.1| orf15 [Staphylococcus aureus] Length = 477 Score = 38.3 bits (87), Expect = 4.7, Method: Composition-based stats. Identities = 30/147 (20%), Positives = 46/147 (31%), Gaps = 16/147 (10%) Query: 484 DYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRP 543 + V G K I + G G GKST + G+ Y + + Sbjct: 156 KWMMGAVARIYQPGIKYDSMIILYGGQGVGKST---AVSKLGGHWYNQSIKTF------- 205 Query: 544 PEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPAS 603 K + +L GS I I E + + IK R +YG P Sbjct: 206 ----KGDEVYKKLQGSWICEIEELSAFQKSTIEDIKGFISAIVDIYRASYGKRTERHPRQ 261 Query: 604 FTPFIVPNKHLFVRNPDDAWWRRYIVI 630 N + F+++ RR+ I Sbjct: 262 CVFVGTTNNYEFLKDQTG--NRRFFPI 286 >gi|330928889|ref|XP_003302443.1| hypothetical protein PTT_14248 [Pyrenophora teres f. teres 0-1] gi|311322209|gb|EFQ89453.1| hypothetical protein PTT_14248 [Pyrenophora teres f. teres 0-1] Length = 938 Score = 38.3 bits (87), Expect = 4.8, Method: Composition-based stats. Identities = 20/223 (8%), Positives = 54/223 (24%), Gaps = 24/223 (10%) Query: 266 NYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKG--- 322 + ++ + + + + S + + I + Sbjct: 396 DEAFNYGRKARTRLLGEDDAAYARRRKAWDEHARNANGDRDGSHQSDSGRWEIGEHEAEL 455 Query: 323 ----HFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNK 378 + W+ + T + +K DL + + Sbjct: 456 TWYIKVVVVFGEIVWWSCNSGRRQEGKTPPWNPTTTFKKLEDKLKRLKRDLPNDLQLTPD 515 Query: 379 NSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDL 438 N++ V N + ++ + + + +S L G LD Sbjct: 516 NTE------------DRVFTNPGKYVSIHAMYTLCFIWLYREYMPTSPWALARPVGPLDE 563 Query: 439 ETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGY-FESE 480 + P + +I + + +F +L+ F Sbjct: 564 PIIEDTPPEPDYWINQ----ARDCAKACSDFTNLLHKIGFPKA 602 >gi|221060396|ref|XP_002260843.1| ATP-dependent protease [Plasmodium knowlesi strain H] gi|193810917|emb|CAQ42815.1| ATP-dependent protease, putative [Plasmodium knowlesi strain H] Length = 1031 Score = 38.3 bits (87), Expect = 4.9, Method: Composition-based stats. Identities = 38/291 (13%), Positives = 85/291 (29%), Gaps = 23/291 (7%) Query: 358 FLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSI 417 L+ MK+++ + N+ + ++ + E + + A Sbjct: 336 LLLKMKKELSTNLKNK--FNEEKEKLMIRECISNLKKKIGEKTDHEILCDKFFAKFQLKK 393 Query: 418 TSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQE----FLDLV 473 + ++S L E + + Y+ PF + E ++ Sbjct: 394 SHMDKEASDTILRELNKFSLYNEHCNDYASTYQYLNTVLSIPFGKYASLCEDISGCERIL 453 Query: 474 SGY-FESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAF------G 526 + + +V Y VG+ +L N + + + G G GK+++ I A Sbjct: 454 TQSHYGLHQVKKYILEYVGLYILNKNVKPKILTLVGYPGIGKTSICKSISSALQLPHYVI 513 Query: 527 NQYVINAEASDIMQNRPPEAGKANPSLIRL----MGSRIVIISETNENDEINAAKIKQMT 582 N I I R + L + + ++++ E ++ NA + Sbjct: 514 NMNNITNMNELIGHRRTYVNSYEGKIIQALISTEVMNPLIVLDELDKISFSNANIYTTLL 573 Query: 583 GGDCMTARLNYGNTYSESPA---SFTPFIVPNKHLFVRNPDDAWWRRYIVI 630 + Y + Y P N + R ++ Sbjct: 574 NLFDSSQNKGYKDVYVNFPINLEKAFFVCTANSVEDIPET---LLDRMEIV 621 >gi|269975302|gb|ACZ55526.1| primase [Staphylococcus phage SA1] Length = 326 Score = 38.3 bits (87), Expect = 5.1, Method: Composition-based stats. Identities = 29/149 (19%), Positives = 45/149 (30%), Gaps = 20/149 (13%) Query: 487 TRCVGMALLGGNKA-QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPE 545 + + K + IRG GSGKSTL L+ G + V + + Sbjct: 1 MDWMAWIIQHPTKRINYSLLIRGAHGSGKSTLGVLMSAMLGRKNVGYVSNTVMNGRFSDW 60 Query: 546 AGKANPSLIRLMGSRIVIISET-NENDEINA-AKIKQMTGGDCMTARLNYGNTYSESPAS 603 A G + I+ E ++ D +A + K+ D S Sbjct: 61 A----------EGDILKIVEEVYDKGDRYSAIERQKEYITNDRFQVEPKGRKPKVVVNTS 110 Query: 604 FTPFIVP--NKHLFVRNPDDAWWRRYIVI 630 N N RRY+V+ Sbjct: 111 SKMMFTNHFNALPLDENQ-----RRYLVV 134 >gi|126465918|ref|YP_001041027.1| ATPase [Staphylothermus marinus F1] gi|126014741|gb|ABN70119.1| ATPase associated with various cellular activities, AAA_5 [Staphylothermus marinus F1] Length = 305 Score = 38.3 bits (87), Expect = 5.1, Method: Composition-based stats. Identities = 25/127 (19%), Positives = 42/127 (33%), Gaps = 4/127 (3%) Query: 512 SGKSTLMNLIKYAFGNQYVINA--EASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNE 569 SGKS + + VI A + + E+ P L L+ V+I E Sbjct: 86 SGKSAFILPCSENYDEYRVIGDFHPAMAMAKGFNEESFIPRPLLAALILDTGVLIDEIRR 145 Query: 570 NDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKH-LFVRNPDDAWWRRYI 628 ++E + + + Y + F N + + DA+ RR + Sbjct: 146 SNEDFQNLLLDIIDKRRIIIPEL-KKVYVQRGHGFQIIFTSNPLDIAQSDLSDAFLRRVV 204 Query: 629 VIPFDKP 635 I F P Sbjct: 205 RIEFKYP 211 >gi|330503074|ref|YP_004379943.1| DNA primase-like protein [Pseudomonas mendocina NK-01] gi|328917360|gb|AEB58191.1| DNA primase-like protein [Pseudomonas mendocina NK-01] Length = 949 Score = 38.3 bits (87), Expect = 5.5, Method: Composition-based stats. Identities = 70/559 (12%), Positives = 156/559 (27%), Gaps = 69/559 (12%) Query: 153 PPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITA 212 P + +++ P+ +++ + W + + R + Sbjct: 226 PTLVWALDNEPVARSYTRKWVKQARAMGFTCEAALIPQKGKKTDWNDLHQRWAFIDDAEQ 285 Query: 213 FLSCFGEEFYNGSHDEWIPVVMAVHHETRGSSKGKEI--ARRWSKQGSTYDEENFNYKWD 270 + + + + + S KG I W + +D W Sbjct: 286 RAARVTADLEEARYQGALLIAE------NASEKGLLIYQRNEWKEFHFGFDNR---MYWW 336 Query: 271 TFDFEEIGDTA---KKRSTFTSLFYHHGKLIPKGL-LASRFSDAYNKAMFSIYKKGHFLY 326 + D ++ + + ++ K L L+ ++ N ++Y + Sbjct: 337 SLDLDKYNKAIQAIEGDDNGADRELSNKEIREKALRLSGSVNEIANCYFEALY---YQRN 393 Query: 327 TADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFW 386 ++WY + + + T+S K+ + ++ + + Sbjct: 394 DITDESWYYLRVDFPHGGPSVKNTFTSSHTTSAGEFKKRLHGMAAGAMFTGTGQQLEKIM 453 Query: 387 FNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRFLGEQDG-ILDLETGQKVK 445 Y + VE + + + +DG + + + Sbjct: 454 KLQTYGIKTVETIDFVGYSKEHGCYVFGD-------------IAVKDGQVYEANAEDFFE 500 Query: 446 PTKELYITKSTGTPFVE----GEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQ 501 K+ T G S E+ L+ F ++ + G +A+ Sbjct: 501 FGKQRIKTLQKGVTIRPSRDAKAYSSEWFKLLWTCFGAQGAVALVW-FFGSLFCEQIRAR 559 Query: 502 RFIH----IRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLM 557 G G+GK+TL+NL+ G + + + + ++ Sbjct: 560 WQSFPFLEATGEAGAGKTTLLNLLWKLLGRPGYEGFDPMKSTK------AGRSRLMAQVA 613 Query: 558 GSRIVIISETNEND------EINAAKIKQMTGGDCMTARLNY--GNTYSESPASFTPFIV 609 G +V + +D ++K GG + + GN E P T I Sbjct: 614 GMPVVYLEADRHSDDKPHAKTFEWDELKDFFGGGTLATKGVKTAGNETYEPPFRGTIAIS 673 Query: 610 PNKHLFVRNPDDAWWRRYIVIPFDK-PIANRDASFAQKLETKYTLEAKKWFLKGVKAYIS 668 N + +A R + F + + + A KL + L+ +KA Sbjct: 674 QNAAVVAH---EAIMTRICKLHFVRPQVTPESRAAADKLNALDGDVLSHFLLQAIKAE-- 728 Query: 669 KGLDVDIPEVCLKAKEEER 687 L A E Sbjct: 729 --------AGVLDAFAEYF 739 >gi|14590135|ref|NP_142199.1| proteasome-activating nucleotidase [Pyrococcus horikoshii OT3] gi|20532203|sp|O57940|PAN_PYRHO RecName: Full=Proteasome-activating nucleotidase; Short=PAN; AltName: Full=Proteasomal ATPase; AltName: Full=Proteasome regulatory ATPase; AltName: Full=Proteasome regulatory particle gi|3256587|dbj|BAA29270.1| 399aa long hypothetical 26S protease regulatory subunit [Pyrococcus horikoshii OT3] Length = 399 Score = 38.3 bits (87), Expect = 5.7, Method: Composition-based stats. Identities = 32/308 (10%), Positives = 85/308 (27%), Gaps = 48/308 (15%) Query: 357 NFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFS 416 +++ +K + L + + + + + + Sbjct: 17 DYITYLKRRIRQLELQVRMLEADKERLERELSRLRSEMSRLRQ-----------PPAFAG 65 Query: 417 ITSDLLDSSSRFLGEQDG---IL----DLETGQKVKPTKELYITKSTGT-PFVEGEPSQE 468 ++LD + +G ++ ++ + T+ ++ + Sbjct: 66 TVIEVLDEDRAIVQNYNGPRFVVRIAPWIDRKKLRPGTRVALDQRTMAVVEILPTSKDPT 125 Query: 469 FLDL---------VSGYFESEEVMDYFTRCVGMALLG-------GNKAQRFIHIRGVGGS 512 L + ++ + + + L G + + + G G Sbjct: 126 VLGFEVIERPNVTYNDIGGLKKQLQELREAIELPLKHPELFEEVGIDPPKGVLLYGPPGC 185 Query: 513 GKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDE 572 GK+ + + + ++ + + + E + L L + I +E D Sbjct: 186 GKTLMAKALAHEVNATFIRVVGSELV-RKYIGEGARLVHELFELAKEKAPTIIFIDEIDA 244 Query: 573 INAAKIKQMTGGDCMTARLNYG--NTYSESPA--SFTPFIVPNKHLFVRNPDDAWWR--- 625 I A ++ + TGG+ R + N+ + D A R Sbjct: 245 IGAKRMDETTGGEREVNRTLMQLLAEMDGFDPRGNVKVIAATNRPDIL---DPALLRPGR 301 Query: 626 --RYIVIP 631 R I +P Sbjct: 302 FDRLIEVP 309 >gi|322689662|ref|YP_004209396.1| hypothetical protein BLIF_1479 [Bifidobacterium longum subsp. infantis 157F] gi|320460998|dbj|BAJ71618.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis 157F] Length = 486 Score = 38.3 bits (87), Expect = 5.7, Method: Composition-based stats. Identities = 22/265 (8%), Positives = 70/265 (26%), Gaps = 15/265 (5%) Query: 170 VEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEW 229 ++ ++ + + + R + A + G+ S + Sbjct: 169 LKAQYEELKAAGEAKKTEIAEARKAAQARAVAERTAIVEKAEALAASLGDNTNWRSTADK 228 Query: 230 IP---VVMAVHHETR---GSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKK 283 H T + + + +R+S +T+++ KW E + Sbjct: 229 FRNLFDEWQNHQRTTVRIDKPEAEALWKRFSAARTTFNQAR--RKWAQARDNERTAAKEA 286 Query: 284 RSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFS----IYKKGHFLYTADT--KAWYKKD 337 + + G + +F+D ++ + + ++ Sbjct: 287 KEAIIAEANELKDSTAWGETSRKFNDLMDRWKKAGRAGRNEDDELWAKFREAADTFFNAR 346 Query: 338 KNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVE 397 + + + + +K + L+ E + + + E + + D Sbjct: 347 QADRDQINSS-EKENLAAKEALLVKAEALVPVKTDAEAKKARQELAKIQEEWDQIGYVPR 405 Query: 398 ENSKAKSTAQSLEAGSIFSITSDLL 422 ++ + I +I Sbjct: 406 DDMRRIENRLDAVDKQIKAIEDAAW 430 >gi|40795864|gb|AAR91602.1| NS protein [Goose parvovirus] Length = 627 Score = 37.9 bits (86), Expect = 6.0, Method: Composition-based stats. Identities = 31/232 (13%), Positives = 71/232 (30%), Gaps = 27/232 (11%) Query: 437 DLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLG 496 + + ++ + + T T ++ G + ++ ++ +Y + +G L G Sbjct: 262 NRQVKAALENARAEMLLTKTTTDYLIG-KDPVLDITKNRVYQILKMNNYNPQYIGSILCG 320 Query: 497 GNKAQR----FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS 552 K + I + G +GK+ + I +A +N N Sbjct: 321 WVKREFNKRNAIWLYGPATTGKTNIAEAIAHAVPFYGCVN-------------WTNENFP 367 Query: 553 LIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612 + ++ E +++ + K + GG + + P + Sbjct: 368 FNDCVDKMLIWWEEGKMTNKVVESA-KAILGGSAVRVDQKCKGSVCIEPTPVIITSNTDM 426 Query: 613 HLFVRNPDDAWWRRYIVIP-----FDKPIANRDASFAQKLETKYTLEAKKWF 659 + V R IP F ++++ K+ K E KW Sbjct: 427 CMIVDGNSTTMEHR---IPLEERMFQIVLSHKLEPSFGKISKKEVREFFKWA 475 >gi|296392562|ref|YP_003657446.1| hypothetical protein Srot_0125 [Segniliparus rotundus DSM 44985] gi|296179709|gb|ADG96615.1| hypothetical protein Srot_0125 [Segniliparus rotundus DSM 44985] Length = 711 Score = 37.9 bits (86), Expect = 6.1, Method: Composition-based stats. Identities = 19/170 (11%), Positives = 40/170 (23%), Gaps = 9/170 (5%) Query: 184 LVKDKKSIIPSKTWTNNNNRQYT-NREITAFLSCFGEEFYNGSHDEWIPVVMAVHHETRG 242 W++ T N++ + + FY + D+W + ++ Sbjct: 185 ADISNPPGEADPDWSDPTPAAATLNQQELGYYDPTWDTFYGYNRDDWHRWGLDGYNPYGY 244 Query: 243 SSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGL 302 G + + + Y +++ R +H G Sbjct: 245 DYTGYDRYGYDRAGYDRWGYDRRGYDRYGYNYAGWRYDPISRMG-----WHRDGYNEWGQ 299 Query: 303 LASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDK-NNVYIWSLTLDKI 351 D N + + Y WY D + W Sbjct: 300 RQGHPDDPRNAGWRDKWYNRYQGY--YENRWYYNDPVYQRHQWDRDRWLR 347 >gi|255522028|ref|ZP_05389265.1| hypothetical protein LmonocFSL_12550 [Listeria monocytogenes FSL J1-175] Length = 113 Score = 37.9 bits (86), Expect = 6.3, Method: Composition-based stats. Identities = 15/82 (18%), Positives = 29/82 (35%), Gaps = 6/82 (7%) Query: 20 LIPLRLGDKR---PQRLGKWEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEK 76 IP+ D W + + + ++K G GF ++P + DID ++ Sbjct: 31 KIPMNANDGSYGNSVDERTWADFETALDSLEKYQFDGLGFYF---KKPYFGVDIDDIKDE 87 Query: 77 TANTFKDTFEILHGTPIVRIGQ 98 + E + G I + Sbjct: 88 IEDYLYGNTENIAGEFIQTLSS 109 >gi|111226818|ref|XP_001134596.1| AAA ATPase domain-containing protein [Dictyostelium discoideum AX4] gi|90970786|gb|EAS66912.1| AAA ATPase domain-containing protein [Dictyostelium discoideum AX4] Length = 330 Score = 37.9 bits (86), Expect = 6.3, Method: Composition-based stats. Identities = 27/159 (16%), Positives = 50/159 (31%), Gaps = 15/159 (9%) Query: 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGK---ANPSLIRLM 557 + I + G G+GK+ L I Y G + + S + E K A S+ + + Sbjct: 120 PKGILLYGPPGTGKTMLAKAISYHCG-YNFLVIDNSMLDSKWYGETEKMVSAMFSVAKKL 178 Query: 558 GSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVR 617 I+ I E + + T + L + + + S + Sbjct: 179 QPTIIFIDEIDSMVSTREDSENE-TSNSKKSILLQHWDGFFSSGNDKVIVMGATNRP--N 235 Query: 618 NPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAK 656 + D A+ RR K + K+ L+ Sbjct: 236 SIDYAFLRRL--------PKRIKVDLPDKDQRKHILQIM 266 >gi|145694447|gb|ABP93843.1| NS2 [Goose parvovirus] Length = 451 Score = 37.9 bits (86), Expect = 6.6, Method: Composition-based stats. Identities = 31/232 (13%), Positives = 71/232 (30%), Gaps = 27/232 (11%) Query: 437 DLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLG 496 + + ++ + + T T ++ G + + ++ ++ +Y + VG L G Sbjct: 86 NRQVKAALENARAEMLLTKTATDYLIG-KDPVLDIIKNRVYQILKMNNYNPQYVGSILCG 144 Query: 497 GNKAQR----FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS 552 K + I + G +GK+ + I +A +N N Sbjct: 145 WVKREFNKRNAIWLYGPATTGKTNIAEAIAHAIPFYGCVN-------------WTNENFP 191 Query: 553 LIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612 + ++ E +++ + K + GG + + + Sbjct: 192 FNDCVDKMLIWWEEGKMTNKVVESA-KAILGGSAVRVDQKCKGSVCIETTPVIITSNTDM 250 Query: 613 HLFVRNPDDAWWRRYIVIP-----FDKPIANRDASFAQKLETKYTLEAKKWF 659 + V R IP F ++++ K+ K E KW Sbjct: 251 CMIVDGNSTTMEHR---IPLEERMFQIVLSHKLEPSFGKISKKEVREFFKWA 299 >gi|159146234|gb|ABW90580.1| virulence-associated protein [Bacteriophage APSE-2] Length = 378 Score = 37.9 bits (86), Expect = 6.7, Method: Composition-based stats. Identities = 21/152 (13%), Positives = 42/152 (27%), Gaps = 15/152 (9%) Query: 191 IIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEWIPVVMAVH--HETRGSSKGKE 248 ++ N T ++ + L ++ W+ + + +T + K Sbjct: 183 DDLTRLVDLQNINDQTFEDLRSALWYPKILNQAENYPSWVDMGNRLAWVKDTHFEDEAKT 242 Query: 249 IARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFS 308 + WS + D E KW R+ + ++F K A R Sbjct: 243 MWLDWSSAAAKGDIEAAEAKWAELRA--------DRTGYQAIFSLAQKAGWVNPGAERLK 294 Query: 309 DAYNKAMFSIYKKGHFLYTADTKAWYKKDKNN 340 A + L + W +N Sbjct: 295 TAVATV--DEFDD---LTNTENSKWPTFKRNK 321 >gi|239620719|ref|ZP_04663750.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis CCUG 52486] gi|239516295|gb|EEQ56162.1| conserved hypothetical protein [Bifidobacterium longum subsp. infantis CCUG 52486] Length = 486 Score = 37.9 bits (86), Expect = 6.8, Method: Composition-based stats. Identities = 22/265 (8%), Positives = 70/265 (26%), Gaps = 15/265 (5%) Query: 170 VEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEW 229 ++ ++ + + + R + A + G+ S + Sbjct: 169 LKAQYEELKAAGEAKKTEIAEARKAAQAKAVAERTAIVEKAEALAASLGDNTNWRSTADK 228 Query: 230 IP---VVMAVHHETR---GSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKK 283 H T + + + +R+S +T+++ KW E + Sbjct: 229 FRNLFDEWQNHQRTTVRIDKPEAEALWKRFSAARTTFNQAR--RKWAQARDNERTAAKEA 286 Query: 284 RSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFS----IYKKGHFLYTADT--KAWYKKD 337 + + G + +F+D ++ + + ++ Sbjct: 287 KEAIIAEANELKDSTAWGETSRKFNDLMDRWKKAGRAGRNEDDELWAKFREAADTFFNAR 346 Query: 338 KNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVE 397 + + + + +K + L+ E + + + E + + D Sbjct: 347 QADRDQINSS-EKENLAAKEALLVKAEALVPVKTDAEAKKARQELAKIQEEWDQIGYVPR 405 Query: 398 ENSKAKSTAQSLEAGSIFSITSDLL 422 ++ + I +I Sbjct: 406 DDMRRIENRLDAVDKQIKAIEDAAW 430 >gi|282163672|ref|YP_003356057.1| proteasome-activating nucleotidase [Methanocella paludicola SANAE] gi|282155986|dbj|BAI61074.1| proteasome-activating nucleotidase [Methanocella paludicola SANAE] Length = 412 Score = 37.9 bits (86), Expect = 6.9, Method: Composition-based stats. Identities = 23/146 (15%), Positives = 44/146 (30%), Gaps = 11/146 (7%) Query: 497 GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRL 556 G + + + + G G+GK+ L + ++ ++ + + + A Sbjct: 184 GIQPPKGVLLYGPPGTGKTLLAKAVAHSTKASFIRIIGSELVQKYIGEGARMVRELFELA 243 Query: 557 MGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG--NTYSESPASFTP-FIVPNKH 613 II +E D I A ++ +T GD R + Sbjct: 244 KEKSPSII-FIDEIDSIGAKRLDSITSGDREVQRTLVQLLAEMDGFDPRGNVRILAATNR 302 Query: 614 LFVRNPDDAWWR-----RYIVIPFDK 634 + D A R R I +P Sbjct: 303 PDI--LDPALLRPGRFDRIIKVPMPN 326 >gi|302392147|ref|YP_003827967.1| ATPase AAA [Acetohalobium arabaticum DSM 5501] gi|302204224|gb|ADL12902.1| AAA ATPase central domain protein [Acetohalobium arabaticum DSM 5501] Length = 339 Score = 37.9 bits (86), Expect = 6.9, Method: Composition-based stats. Identities = 31/188 (16%), Positives = 56/188 (29%), Gaps = 17/188 (9%) Query: 469 FLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 +++ Y+ + ++ G L + I G G GK+ + Sbjct: 107 INRIMAEYYGANQLR-------GYNLNAKRR----ILFCGPPGCGKTMTAQSLANEINLP 155 Query: 529 YVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMT 588 + S I A R VI +E D I ++ + G+ Sbjct: 156 LLYIHMDSLISSYLGDTASNLRKIFQYAEQGRWVIFF--DEFDTIGKSRDDENEHGELKR 213 Query: 589 ARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRY-IVIPFDKPIANRDASFAQKL 647 A + N + D+A WRR+ ++ FDKP + +K Sbjct: 214 AVNTFLQMLDNFKTETLLIAATNHQHLL---DNAIWRRFDEIVYFDKPDIEQIQKLLKKK 270 Query: 648 ETKYTLEA 655 + E Sbjct: 271 LRTFKSEI 278 >gi|281211293|gb|EFA85458.1| AAA ATPase domain-containing protein [Polysphondylium pallidum PN500] Length = 442 Score = 37.9 bits (86), Expect = 6.9, Method: Composition-based stats. Identities = 21/161 (13%), Positives = 46/161 (28%), Gaps = 13/161 (8%) Query: 493 ALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQ--NRPPEAGKAN 550 G K + I + G G+GKS L + + + + + + + + K Sbjct: 159 MFTGKRKPWKGILLYGPPGTGKSYLAKAVATEISSTFFSISPSDIVTKWLGDSEKLVKQL 218 Query: 551 PSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVP 610 + R + ++ + E + + + + + + + Sbjct: 219 FEMARAANNSVIFVDEIDSLCSSRNDQ--ESESSRRIKTEFLIQLDGVGNDSDGVLILAA 276 Query: 611 NKHLFVRNPDDAWWRRYIVIPFDKP--IANRDASFAQKLET 649 D A RR F+K I D K+ Sbjct: 277 TNIP--WGLDLAIRRR-----FEKRIYIPLPDPHARIKMFQ 310 >gi|322691623|ref|YP_004221193.1| hypothetical protein BLLJ_1434 [Bifidobacterium longum subsp. longum JCM 1217] gi|320456479|dbj|BAJ67101.1| conserved hypothetical protein [Bifidobacterium longum subsp. longum JCM 1217] Length = 486 Score = 37.9 bits (86), Expect = 7.4, Method: Composition-based stats. Identities = 22/265 (8%), Positives = 70/265 (26%), Gaps = 15/265 (5%) Query: 170 VEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGEEFYNGSHDEW 229 ++ ++ + + + R + A + G+ S + Sbjct: 169 LKAQYEELKAAGEAKKTEIAEARKAAQAKAVAERTAIVEKAEALAASLGDNTNWRSTADK 228 Query: 230 IP---VVMAVHHETR---GSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKK 283 H T + + + +R+S +T+++ KW E + Sbjct: 229 FRNLFDEWQNHQRTTVRIDKPEAEALWKRFSAARTTFNQAR--RKWAQARDNERTAAKEA 286 Query: 284 RSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFS----IYKKGHFLYTADT--KAWYKKD 337 + + G + +F+D ++ + + ++ Sbjct: 287 KEAIIAEANELKDSTAWGETSRKFNDLMDRWKKAGRAGRNEDDELWAKFREAADTFFNAR 346 Query: 338 KNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVE 397 + + + + +K + L+ E + + + E + + D Sbjct: 347 QADRDQINSS-EKENLAAKEALLVKAEALVPVKTDAEAKKARQELAKIQEEWDQIGYVPR 405 Query: 398 ENSKAKSTAQSLEAGSIFSITSDLL 422 ++ + I +I Sbjct: 406 DDMRRIENRLDAVDKQIKAIEDAAW 430 >gi|308463408|ref|XP_003093978.1| hypothetical protein CRE_16355 [Caenorhabditis remanei] gi|308248719|gb|EFO92671.1| hypothetical protein CRE_16355 [Caenorhabditis remanei] Length = 774 Score = 37.6 bits (85), Expect = 8.0, Method: Composition-based stats. Identities = 37/309 (11%), Positives = 82/309 (26%), Gaps = 24/309 (7%) Query: 142 PKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNN 201 PK KK+ + ++ P E E L Q+ P +S + Sbjct: 46 PKRKKDLETSQKSSSHRIVAKPTNPEFTEEKLRNILQKFAPPSQPSTESKEELTSEKKKA 105 Query: 202 NRQYTNREITAFLSCFGEEFYN--GSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGST 259 ++ + L DE ++ E S R+ +K+ + Sbjct: 106 TKRKRKVDKPELLQEHSSPVIENIEKWDERTTLMEIFKQEPNPS-------RQMTKEIAK 158 Query: 260 YDEENFNYKWDTFDFEEIGDTAKKRSTFTS----LFYHHGKLIPKGLLASRFSDAYNKAM 315 ++ F + + + + + L + + L R + Sbjct: 159 VLKKRQGRVSRFFSNQRNKEKNSGKYSHVTPEIRLKLEEEFKVNQNLTTERKKEVAAANN 218 Query: 316 FSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLD--------KITASIMNFLVSMKEDVF 367 + + ++ K +KD N + + F S ++ F Sbjct: 219 LQLKTVTTWFFSRRMK---EKDPENWKKMKAKYRADSKRRLRLESNKPLQFKYSEEQKNF 275 Query: 368 DLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSR 427 + E + + R W + + L I +L + Sbjct: 276 MNGKVSEGHEITKEQSREWAKEINLNEYQAARRRRPRARTPLTEEEAIPIIGKVLKENPN 335 Query: 428 FLGEQDGIL 436 + +G+L Sbjct: 336 YRECGNGVL 344 >gi|145694446|gb|ABP93842.1| NS1 [Goose parvovirus] Length = 627 Score = 37.6 bits (85), Expect = 8.0, Method: Composition-based stats. Identities = 31/232 (13%), Positives = 71/232 (30%), Gaps = 27/232 (11%) Query: 437 DLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLG 496 + + ++ + + T T ++ G + + ++ ++ +Y + VG L G Sbjct: 262 NRQVKAALENARAEMLLTKTATDYLIG-KDPVLDIIKNRVYQILKMNNYNPQYVGSILCG 320 Query: 497 GNKAQR----FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS 552 K + I + G +GK+ + I +A +N N Sbjct: 321 WVKREFNKRNAIWLYGPATTGKTNIAEAIAHAIPFYGCVN-------------WTNENFP 367 Query: 553 LIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612 + ++ E +++ + K + GG + + + Sbjct: 368 FNDCVDKMLIWWEEGKMTNKVVESA-KAILGGSAVRVDQKCKGSVCIETTPVIITSNTDM 426 Query: 613 HLFVRNPDDAWWRRYIVIP-----FDKPIANRDASFAQKLETKYTLEAKKWF 659 + V R IP F ++++ K+ K E KW Sbjct: 427 CMIVDGNSTTMEHR---IPLEERMFQIVLSHKLEPSFGKISKKEVREFFKWA 475 >gi|315226623|ref|ZP_07868411.1| conserved hypothetical protein [Parascardovia denticolens DSM 10105] gi|315120755|gb|EFT83887.1| conserved hypothetical protein [Parascardovia denticolens DSM 10105] Length = 488 Score = 37.6 bits (85), Expect = 8.1, Method: Composition-based stats. Identities = 29/281 (10%), Positives = 61/281 (21%), Gaps = 43/281 (15%) Query: 160 EDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGE 219 ED K E KK + + +I Sbjct: 156 EDIKKADVVGDIAALKSRLEELKTEGASKKEELAAARKEAMAKAAAEREKIVVEAEQLAA 215 Query: 220 EFYNGSHDEWIPVV---MAV---------HHETRGSSKGKEIARRWSKQGSTYDEENFNY 267 G W A+ H S+ + +R+S S+++ Sbjct: 216 SL--GDSTNWRQTGDKFQALFNKWQEHQKHSIHLEKSQADALWKRFSAARSSFNSAR--R 271 Query: 268 KWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYT 327 W + + K + + + RF++ Sbjct: 272 AWIQQRDSQRSEARKAKEKIIAAAESIQDSTDWAATSRRFNELM---------------- 315 Query: 328 ADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWF 387 W + + L K + + + ++ D E E N Sbjct: 316 ---DEWKAAGRVGRHEEDDALWKRFRAAADVFFNARQADRDKLNEGETEN--------LK 364 Query: 388 NTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRF 428 + + + K ++ + + D D Sbjct: 365 KKEALLEKAKALLPVKDVKEAKQTRQSLAKIQDEWDQIGYV 405 >gi|168211842|ref|ZP_02637467.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Clostridium perfringens B str. ATCC 3626] gi|170710208|gb|EDT22390.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Clostridium perfringens B str. ATCC 3626] Length = 310 Score = 37.6 bits (85), Expect = 8.2, Method: Composition-based stats. Identities = 42/285 (14%), Positives = 97/285 (34%), Gaps = 45/285 (15%) Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVI 563 + I G GKS L + + + + G A S + G + Sbjct: 6 LIIAGPTAVGKSDLSVDLAKKL---NGEIISVDSMQIYKYMDIGSAKISKEEMGGIPHYL 62 Query: 564 ISETNENDEINAAKIKQMTGGD--CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDD 621 I + E + A+ K++ + +R P + L++ + Sbjct: 63 IDFVDPGKEFSVAEFKELATEKIKDIQSRGK------------LPILAGGTGLYINS--- 107 Query: 622 AWWRRYIVIPFDKPIANRDASFAQKLET---KYTLEAKKWFLKGVKAYISKGLDVDIPEV 678 I+ + +++D ++ ++LE ++ E LK + + + + Sbjct: 108 ------IICNMNFAESDKDEAYREELEKIANEHGNEYLHEMLKDIDLESYNSIHFNNRKR 161 Query: 679 CLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKS-YSEYREQELNYDRKRISTRT 737 ++A E + + ++ + +S+ ++ Y+ Y LN DR ++ R Sbjct: 162 VIRALETYKLTGKPFSSF------------KAKNSIYETPYNIYY-YVLNMDRAKLYDRI 208 Query: 738 VTL--NLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDD 780 + +KG + +K K + +KG+ K +D Sbjct: 209 NKRVDIMFEKGLLEEVKNLKAMGLTDDMQSMKGIGYKEVLYYLDG 253 >gi|109392405|ref|YP_654949.1| gp52 [Mycobacterium phage Cooper] gi|88910239|gb|ABD58169.1| gp52 [Mycobacterium phage Cooper] Length = 926 Score = 37.6 bits (85), Expect = 8.2, Method: Composition-based stats. Identities = 17/205 (8%), Positives = 43/205 (20%), Gaps = 31/205 (15%) Query: 36 WEEQLLSSEKIDKLPACGFGFVCGVGEQPLYAFDIDSKDEKTANTFKDTF-EILHGTPIV 94 W ++ + +I VG + D D+ + + + P + Sbjct: 123 WSKKAEDAGQIAMARPAAVNLAVEVGGSGVVVIDCDTAAQVDRWFEVAEIPDDMRPAPTI 182 Query: 95 RIGQ----------------KPKILIPFRMNKEGIKKKKT-----TESTQGHLDILGCGQ 133 F + + + T +L + Sbjct: 183 LTPGQFGADADPNDPSTWAHADGGHFWFTVPDKYLPVLPRHLGAMTWGGDHGFAVLWDRR 242 Query: 134 YFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIP 193 Y + ++ L + E + + + Sbjct: 243 YVLIPPSTRPEGAY---------EQLGHVYDLPDWLGEAIMQAGERRVQRAEASAGDTAE 293 Query: 194 SKTWTNNNNRQYTNREITAFLSCFG 218 + + +R N + L G Sbjct: 294 NPELATHIDRWAENVSWASILEPLG 318 >gi|18310139|ref|NP_562073.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Clostridium perfringens str. 13] gi|21263768|sp|Q8XL85|MIAA_CLOPE RecName: Full=tRNA dimethylallyltransferase; AltName: Full=Dimethylallyl diphosphate:tRNA dimethylallyltransferase; Short=DMAPP:tRNA dimethylallyltransferase; Short=DMATase; AltName: Full=Isopentenyl-diphosphate:tRNA isopentenyltransferase; Short=IPP transferase; Short=IPPT; Short=IPTase gi|18144818|dbj|BAB80863.1| tRNA isopentenylpyrophosphate transferase [Clostridium perfringens str. 13] Length = 310 Score = 37.6 bits (85), Expect = 8.6, Method: Composition-based stats. Identities = 44/285 (15%), Positives = 98/285 (34%), Gaps = 45/285 (15%) Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVI 563 + I G GKS L + + + + G A S + G + Sbjct: 6 LIIAGPTAVGKSDLSVDLAKKL---NGEIISVDSMQIYKYMDIGSAKISKEEMGGIPHYL 62 Query: 564 ISETNENDEINAAKIKQMTGGD--CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDD 621 I + + E + A+ K +T + +R P +V L++ + Sbjct: 63 IDFVDPSKEFSVAEFKDLTTEKIKDIQSRGK------------LPILVGGTGLYINS--- 107 Query: 622 AWWRRYIVIPFDKPIANRDASFAQKLET---KYTLEAKKWFLKGVKAYISKGLDVDIPEV 678 I+ + +++D + ++LE ++ E LK + + + + Sbjct: 108 ------IICNMNFAESDKDEEYREELEKIANEHGNEYLHEMLKDIDLESYNSIHFNNRKR 161 Query: 679 CLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKS-YSEYREQELNYDRKRISTRT 737 ++A E + + ++ + +S+ ++ Y+ Y LN DR ++ R Sbjct: 162 VIRALETYKLTGKPFSSF------------KAKNSIYETPYNIYY-YVLNMDRAKLYDRI 208 Query: 738 VTL--NLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDD 780 + +KG + +K K + +KG+ K +D Sbjct: 209 NKRVDIMFEKGLLEEVKNLKAMGLTDDMQSMKGIGYKEVLYYLDG 253 >gi|110803443|ref|YP_698495.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Clostridium perfringens SM101] gi|123146165|sp|Q0STR2|MIAA_CLOPS RecName: Full=tRNA dimethylallyltransferase; AltName: Full=Dimethylallyl diphosphate:tRNA dimethylallyltransferase; Short=DMAPP:tRNA dimethylallyltransferase; Short=DMATase; AltName: Full=Isopentenyl-diphosphate:tRNA isopentenyltransferase; Short=IPP transferase; Short=IPPT; Short=IPTase gi|110683944|gb|ABG87314.1| tRNA delta(2)-isopentenylpyrophosphate transferase [Clostridium perfringens SM101] Length = 310 Score = 37.6 bits (85), Expect = 8.8, Method: Composition-based stats. Identities = 43/285 (15%), Positives = 98/285 (34%), Gaps = 45/285 (15%) Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVI 563 + I G GKS L + + + + G A S + G + Sbjct: 6 LIIAGPTAVGKSDLSVDLAKKL---NGEIISVDSMQIYKYMDIGSAKISKEEMGGIPHYL 62 Query: 564 ISETNENDEINAAKIKQMTGGD--CMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDD 621 I + + E + A+ K++ + +R P +V L++ + Sbjct: 63 IDFVDPSKEFSVAEFKELATEKIKDIQSRGK------------LPILVGGTGLYINS--- 107 Query: 622 AWWRRYIVIPFDKPIANRDASFAQKLET---KYTLEAKKWFLKGVKAYISKGLDVDIPEV 678 I+ + +++D + ++LE ++ E LK + + + + Sbjct: 108 ------IICNMNFAESDKDEEYREELEKIANEHGNEYLHEMLKDIDLESYNSIHFNNRKR 161 Query: 679 CLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKS-YSEYREQELNYDRKRISTRT 737 ++A E + + ++ + +S+ ++ Y+ Y LN DR ++ R Sbjct: 162 VIRALETYKLTGKPFSSF------------KAKNSIYETPYNIYY-YVLNMDRAKLYERI 208 Query: 738 VTL--NLKQKGFIGGIKREKIEKEWKSKRIIKGLKLKPAFESVDD 780 + +KG + +K K + +KG+ K +D Sbjct: 209 NKRVDIMFEKGLLEEVKNLKAMGLTDDMQSMKGIGYKEVLYYLDG 253 >gi|88604147|ref|YP_504325.1| hypothetical protein Mhun_2914 [Methanospirillum hungatei JF-1] gi|88189609|gb|ABD42606.1| hypothetical protein Mhun_2914 [Methanospirillum hungatei JF-1] Length = 429 Score = 37.6 bits (85), Expect = 9.1, Method: Composition-based stats. Identities = 35/304 (11%), Positives = 84/304 (27%), Gaps = 16/304 (5%) Query: 129 LGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEEDVEYLFKFFQEITVPLVKDK 188 G G+Y ++++P K + T ++ + E L + + +D Sbjct: 125 RGPGRY--LHHLYPDEVKVFKQTLDHMGHELNRMTEIIRISRERLMHIAEMRALLHNRDA 182 Query: 189 KSIIPSKTWTNNNNRQYTNREITAFLSCFGEEF----YNGSHDEWIPVVMAVHHETRGSS 244 ++ + E+ L G E + S+ ++ + Sbjct: 183 LIEEEAQAGAEEKKFEARLSELKTDLQKAGSELERLLASDSYASYLRLEEETGQIREQLE 242 Query: 245 KGKEIARRWSKQG---STYDEENFNYKWDTFDFEEIGDTAKKRSTFTSLFYHHGK--LIP 299 K +E + + F + D + + D + S+ + + Sbjct: 243 KARETWESQIRVALPVWKRGVKAFQEQAKPVDEKNMEDLIQAASSPRRDDDEIARLISLT 302 Query: 300 KGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYIWSLTLDKITASIMNFL 359 L + F +A S K TK + + + + K N L Sbjct: 303 AKPLFTLFESGIVQAKNSFEKHLFTNAEEYTKKFGEISISLHTLSEDLKRKKQDLEGNVL 362 Query: 360 VSMKEDVFDLSEEPEDNNKNSKSPRFWFNTDYRRQNVEENSKAKSTAQSLEAGSIFSITS 419 + K + E + + R++ + + + + T Sbjct: 363 LEQKNHITQTITEA-----EKRIDELNQEEEKRKERLSSLKEKQRSILEELRKKFSEFTE 417 Query: 420 DLLD 423 + +D Sbjct: 418 EEMD 421 >gi|190888189|gb|ACE95848.1| Rep [Goose parvovirus] Length = 627 Score = 37.6 bits (85), Expect = 9.4, Method: Composition-based stats. Identities = 31/232 (13%), Positives = 70/232 (30%), Gaps = 27/232 (11%) Query: 437 DLETGQKVKPTKELYITKSTGTPFVEGEPSQEFLDLVSGYFESEEVMDYFTRCVGMALLG 496 + + ++ + + T T ++ G + ++ ++ +Y + +G L G Sbjct: 262 NRQVKAALENARAEMLLTKTATDYLIG-KDPVLDITKNRVYQILKMNNYNPQYIGSILCG 320 Query: 497 GNKAQR----FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS 552 K + I + G +GK+ + I +A +N N Sbjct: 321 WVKREFNKRNAIWLYGPATTGKTNIAEAIAHAVPFYGCVN-------------WTNENFP 367 Query: 553 LIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612 + ++ E +++ K + GG + + P + Sbjct: 368 FNDCVDKMLIWWEEGKMTNKVVE-FAKAILGGSAVRVDQKCKGSVCIEPTPVIITSNTDM 426 Query: 613 HLFVRNPDDAWWRRYIVIP-----FDKPIANRDASFAQKLETKYTLEAKKWF 659 + V R IP F ++++ K+ K E KW Sbjct: 427 CMIVDGNSTTMEHR---IPLEERMFQIVLSHKLEPSFGKISKKEVREFFKWA 475 >gi|294786982|ref|ZP_06752236.1| conserved hypothetical protein [Parascardovia denticolens F0305] gi|294485815|gb|EFG33449.1| conserved hypothetical protein [Parascardovia denticolens F0305] Length = 475 Score = 37.6 bits (85), Expect = 9.6, Method: Composition-based stats. Identities = 29/281 (10%), Positives = 61/281 (21%), Gaps = 43/281 (15%) Query: 160 EDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKTWTNNNNRQYTNREITAFLSCFGE 219 ED K E KK + + +I Sbjct: 143 EDIKKADVVGDIAALKSRLEELKTEGASKKEELAAARKEAMAKAAAEREKIVVEAEQLAA 202 Query: 220 EFYNGSHDEWIPVV---MAV---------HHETRGSSKGKEIARRWSKQGSTYDEENFNY 267 G W A+ H S+ + +R+S S+++ Sbjct: 203 SL--GDSTNWRQTGDKFQALFNKWQEHQKHSIHLEKSQADALWKRFSAARSSFNSAR--R 258 Query: 268 KWDTFDFEEIGDTAKKRSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYT 327 W + + K + + + RF++ Sbjct: 259 AWIQQRDSQRSEARKAKEKIIAAAESIQDSTDWAATSRRFNELM---------------- 302 Query: 328 ADTKAWYKKDKNNVYIWSLTLDKITASIMNFLVSMKEDVFDLSEEPEDNNKNSKSPRFWF 387 W + + L K + + + ++ D E E N Sbjct: 303 ---DEWKAAGRVGRHEEDDALWKRFRAAADVFFNARQADRDKLNEGETEN--------LK 351 Query: 388 NTDYRRQNVEENSKAKSTAQSLEAGSIFSITSDLLDSSSRF 428 + + + K ++ + + D D Sbjct: 352 KKEALLEKAKALLPVKDVKEAKQTRQSLAKIQDEWDQIGYV 392 >gi|118349610|ref|XP_001008086.1| hypothetical protein TTHERM_00006050 [Tetrahymena thermophila] gi|89289853|gb|EAR87841.1| hypothetical protein TTHERM_00006050 [Tetrahymena thermophila SB210] Length = 8668 Score = 37.6 bits (85), Expect = 9.8, Method: Composition-based stats. Identities = 10/99 (10%), Positives = 33/99 (33%), Gaps = 1/99 (1%) Query: 497 GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLI-R 555 ++ G G GK+ L+ + Y + + + + + + ++ Sbjct: 1822 RIRSNIPTIFMGETGIGKTALLEYLAYLMNDMFYSKTIHAGVTEKEIIDLVESLEKKAME 1881 Query: 556 LMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYG 594 L ++++ + + + K+M + R + Sbjct: 1882 LDNKKLILFFDEANTCSLISGLFKEMIVDRLIKGRQLFK 1920 Database: nr Posted date: May 22, 2011 12:22 AM Number of letters in database: 999,999,966 Number of sequences in database: 2,987,313 Database: /data/usr2/db/fasta/nr.01 Posted date: May 22, 2011 12:30 AM Number of letters in database: 999,999,796 Number of sequences in database: 2,903,041 Database: /data/usr2/db/fasta/nr.02 Posted date: May 22, 2011 12:36 AM Number of letters in database: 999,999,281 Number of sequences in database: 2,904,016 Database: /data/usr2/db/fasta/nr.03 Posted date: May 22, 2011 12:41 AM Number of letters in database: 999,999,960 Number of sequences in database: 2,935,328 Database: /data/usr2/db/fasta/nr.04 Posted date: May 22, 2011 12:46 AM Number of letters in database: 842,794,627 Number of sequences in database: 2,394,679 Lambda K H 0.307 0.116 0.288 Lambda K H 0.267 0.0358 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4,297,393,278 Number of Sequences: 14124377 Number of extensions: 127402334 Number of successful extensions: 515053 Number of sequences better than 10.0: 2709 Number of HSP's better than 10.0 without gapping: 1100 Number of HSP's successfully gapped in prelim test: 1609 Number of HSP's that attempted gapping in prelim test: 507899 Number of HSP's gapped (non-prelim): 3257 length of query: 789 length of database: 4,842,793,630 effective HSP length: 147 effective length of query: 642 effective length of database: 2,766,510,211 effective search space: 1776099555462 effective search space used: 1776099555462 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.2 bits) S2: 85 (37.5 bits)