RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254781225|ref|YP_003065638.1| P4 family phage/plasmid
primase [Candidatus Liberibacter asiaticus str. psy62]
         (789 letters)



>1ro2_A Hypothetical protein ORF904; DNA polymerase, primase, replication,
           polymerization, evolution of nucleic acid polymerizing
           enzymes; 1.60A {Sulfolobus islandicus} SCOP: d.264.1.2
           PDB: 1ro0_A 1rni_A
          Length = 216

 Score = 62.4 bits (151), Expect = 4e-10
 Identities = 34/191 (17%), Positives = 66/191 (34%), Gaps = 24/191 (12%)

Query: 8   EQAKQAIHNGFKLIPLRLGDKRP--QRLGKWEEQLLSSEKIDKL-----PACGFGFVCGV 60
             AK  + +GF +IP+    K+P  +   K+  ++ S E+  +          +      
Sbjct: 6   RYAKWMLEHGFNIIPIDPESKKPVLKEWQKYSHEMPSDEEKQRFLKMIEEGYNYAIPG-- 63

Query: 61  GEQPLYAFDIDSKDEKTA-NTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKK-- 117
           G++ +   D +SK++  A        E+   T          I I    N     K    
Sbjct: 64  GQKGMVIMDFESKEKLKAWIGESALEELCRKTLCTNTVHGG-IHIYVLSNDIPPHKINPL 122

Query: 118 TTESTQGHLDILGCGQYFVA------YNIHPKTKKEYTW---TTPPHRFKVEDTPLLSEE 168
             E+ +G +D+     Y +       +      K  +     TT        +   +S+ 
Sbjct: 123 FEENGKGIIDLQSYNSYVLGLGSCVNHLHCTTDKCPWKEQNYTTCY--TLYNELKEISKV 180

Query: 169 DVEYLFKFFQE 179
           D++ L +F  E
Sbjct: 181 DLKSLLRFLAE 191


>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase;
           HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP:
           c.37.1.20 PDB: 1s9h_A
          Length = 267

 Score = 58.8 bits (142), Expect = 5e-09
 Identities = 18/161 (11%), Positives = 36/161 (22%), Gaps = 26/161 (16%)

Query: 485 YFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544
           Y               +  I + G   +GK+ +   I +       +N            
Sbjct: 88  YAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTVPFYGCVNWTNE-------- 139

Query: 545 EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604
                N      +   ++   E            K + GG  +       ++    P   
Sbjct: 140 -----NFPFNDCVDKMVIWWEEGK-MTAKVVESAKAILGGSKVRVDQKCKSSAQIDP--- 190

Query: 605 TPFIV---------PNKHLFVRNPDDAWWRRYIVIPFDKPI 636
           TP IV          + +            R       + +
Sbjct: 191 TPVIVTSNTNMCAVIDGNSTTFEHQQPLQDRMFKFELTRRL 231


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 49.9 bits (119), Expect = 2e-06
 Identities = 53/333 (15%), Positives = 88/333 (26%), Gaps = 162/333 (48%)

Query: 408 SLEAGSI-FSITSDLLDSSSRFLGEQ-------------DGI-LDLETGQKVKPTKELYI 452
           +L  GS+   +   L+ ++S F+  Q             +G   D E         EL  
Sbjct: 10  TLSHGSLEHVL---LVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPA----ELV- 61

Query: 453 TKSTGTPFV-----EGEPSQ--EFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIH 505
            K  G  +V       +  Q  + L+L    FE+      +        L GN     IH
Sbjct: 62  GKFLG--YVSSLVEPSKVGQFDQVLNLCLTEFENC-----Y--------LEGND----IH 102

Query: 506 --IRGVGGSGKSTLM---NLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS-LIRLMGS 559
                +     +TL+    LIK            A  + +       K + S L R +G 
Sbjct: 103 ALAAKLLQENDTTLVKTKELIKNYI--------TARIMAKRPFD---KKSNSALFRAVGE 151

Query: 560 RIVIISETNENDEINAAKIKQMTGG-----DCMTA-RLNYGNTYSESPASFTPFIVP--- 610
                           A++  + GG     D     R  Y  TY          +     
Sbjct: 152 --------------GNAQLVAIFGGQGNTDDYFEELRDLY-QTY-------HVLVGDLIK 189

Query: 611 --NKHL--FVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666
              + L   +R   DA                                 +K F       
Sbjct: 190 FSAETLSELIRTTLDA---------------------------------EKVF------- 209

Query: 667 ISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD 699
            ++GL++                      W+++
Sbjct: 210 -TQGLNI--------------------LEWLEN 221



 Score = 40.3 bits (94), Expect = 0.002
 Identities = 29/161 (18%), Positives = 48/161 (29%), Gaps = 53/161 (32%)

Query: 587 MTA---R---LNYGN-TYSESPASFTPFIVPNKHLFVRNP--DDAWWRRYIVIPFDKPIA 637
           M A   R   L++G+  +          +VP    F+ +   +           F+K + 
Sbjct: 1   MDAYSTRPLTLSHGSLEHV--------LLVPTASFFIASQLQEQ----------FNKILP 42

Query: 638 NRDASFAQKLETKYTLE--AKKWFLKGVKAYI---SKGLDVDIPEVCLKAKEEERQGTDT 692
                FA   E     E   K  FL  V + +     G    +  +CL   E      + 
Sbjct: 43  EPTEGFAADDEPTTPAELVGK--FLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGN- 99

Query: 693 YQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRI 733
                    DI        H+LA    +  +  L    K +
Sbjct: 100 ---------DI--------HALAAKLLQENDTTLV-KTKEL 122



 Score = 36.5 bits (84), Expect = 0.022
 Identities = 70/336 (20%), Positives = 119/336 (35%), Gaps = 93/336 (27%)

Query: 59   GVGEQPLYAFDIDSKD--EKTANTFKDT--FEILHGTPIVRIGQKPKILIPFRMNKEGIK 114
            G+G   LY     ++D   +  N FKDT  F IL    IV I     + I F     G K
Sbjct: 1630 GMG-MDLYKTSKAAQDVWNRADNHFKDTYGFSILD---IV-INNPVNLTIHF----GGEK 1680

Query: 115  KKKTTESTQGHL------DILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEE 168
             K+  E+    +        L   + F   N H  +   YT       F+ E   L + +
Sbjct: 1681 GKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTS---YT-------FRSEKGLLSATQ 1730

Query: 169  DVEYLFKFFQEITVPLVKDKKSIIPSK-TWTNNNNRQYTN----REITAFLSCFGEEFYN 223
              +      ++     +K  K +IP+  T+  ++  +Y       ++ +  S     FY 
Sbjct: 1731 FTQPALTLMEKAAFEDLK-SKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYR 1789

Query: 224  GSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKK 283
            G     + + +AV  +  G S    IA    +  +++ +E   Y       E +G    K
Sbjct: 1790 G-----MTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYV-----VERVG----K 1835

Query: 284  RSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYI 343
            R+               G L    +  YN       +   ++   D +A           
Sbjct: 1836 RT---------------GWLVEIVN--YN------VENQQYVAAGDLRA----------- 1861

Query: 344  WSLTLDKITASIMNFLVSMKEDVFDLS-----EEPE 374
                LD +T +++NF+   K D+ +L      EE E
Sbjct: 1862 ----LDTVT-NVLNFIKLQKIDIIELQKSLSLEEVE 1892



 Score = 32.2 bits (73), Expect = 0.42
 Identities = 24/113 (21%), Positives = 30/113 (26%), Gaps = 28/113 (24%)

Query: 642 SFAQKL--ETKYTLEAKKWFLKG-VKAYISKGLDVDIPEVC--LKAKEEER--------- 687
           + A KL  E   TL   K  +K  + A I      D        +A  E           
Sbjct: 103 ALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGG 162

Query: 688 QGT------------DTYQAWIDDCCD-IGENLWEESHSLAKSYSEYREQELN 727
           QG              TY   + D      E L E          +   Q LN
Sbjct: 163 QGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELI-RTTLDAEKVFTQGLN 214


>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA
           translocation, nucleotide-binding, DNA-binding, early
           protein; 3.00A {Bovine papillomavirus type 1} PDB:
           2gxa_A*
          Length = 305

 Score = 47.9 bits (114), Expect = 8e-06
 Identities = 24/169 (14%), Positives = 51/169 (30%), Gaps = 25/169 (14%)

Query: 493 ALLGGNKAQRFIHIRGVGGSGKSTL-MNLIKYAFGNQYVINAEASDIMQNRPPEAGKANP 551
             L G   +  +   G   +GKS L  +LI +  G+  V++               K++ 
Sbjct: 118 LWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFLGGS--VLSFANH-----------KSHF 164

Query: 552 SLIRLMGSRIVIISETNENDEINA-AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVP 610
            L  L  +R  ++ +            ++    G  ++    +            P +V 
Sbjct: 165 WLASLADTRAALVDDATHACWRYFDTYLRNALDGYPVSIDRKHKAAVQIK---APPLLVT 221

Query: 611 -NKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKW 658
            N  +   +       R     F++P  +         E  + +    W
Sbjct: 222 SNIDVQAEDRYLYLHSRVQTFRFEQPCTDESG------EQPFNITDADW 264


>3m1m_A ORF904; primase, polymerase, plasmid, replication; 1.85A
           {Sulfolobus islandicus}
          Length = 335

 Score = 40.2 bits (93), Expect = 0.002
 Identities = 36/219 (16%), Positives = 72/219 (32%), Gaps = 42/219 (19%)

Query: 8   EQAKQAIHNGFKLIPLRLGDKRP--QRLGKWEEQLLSSEKIDKL-----PACGFGFVCGV 60
             AK  + +GF +IP+    K+P  +   K+  ++ S E+  +          +      
Sbjct: 10  RYAKWFLEHGFNIIPIDPESKKPVLKEWQKYSHEMPSDEEKQRFLKMIEEGYNYAIPG-- 67

Query: 61  GEQPLYAFDIDSKDE-KTANTFKDTFEILHGTPIV-----------RIGQKPKILIPFRM 108
           G++ L   D +SK++ K         E+   T                   P   I    
Sbjct: 68  GQKGLVILDFESKEKLKAWIGESALEELCRKTLCTNTVHGGIHIYVLSNDIPPHKINPLF 127

Query: 109 NKEGIKKKKTTESTQGHLDILGCGQYFVA-----YNIHPKTKK------EYTWTTPPHRF 157
            + G          +G +D+     Y +       ++H  T K       YT     +  
Sbjct: 128 EENG----------KGIIDLQSYNSYVLGLGSCVNHLHCTTDKCPWKEQNYTTCYTLYNE 177

Query: 158 KVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKT 196
             E + +  +  + +L +  + + + L K  K  +  K 
Sbjct: 178 LKEISKVDLKSLLRFLAEKGKRLGITLSKTAKEWLEGKK 216


>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+
           protein; 2.10A {Human papillomavirus type 18} SCOP:
           c.37.1.20
          Length = 212

 Score = 39.0 bits (91), Expect = 0.004
 Identities = 25/168 (14%), Positives = 47/168 (27%), Gaps = 24/168 (14%)

Query: 494 LLGGNKAQRFIHIRGVGGSGKSTL-MNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS 552
            L G   +  +   G   +GKS   M+ I +  G         S             +  
Sbjct: 51  FLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNSTS-------------HFW 97

Query: 553 LIRLMGSRIVIISE-TNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV-P 610
           L  L  +++ ++ + T          ++    G+ ++    +            P ++  
Sbjct: 98  LEPLTDTKVAMLDDATTTCWTYFDTYMRNALDGNPISIDRKHKPLIQLK---CPPILLTT 154

Query: 611 NKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKW 658
           N H    N       R  V  F          F +     Y +  K W
Sbjct: 155 NIHPAKDNRWPYLESRITVFEFPNAF-----PFDKNGNPVYEINDKNW 197


>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase,
           antibiotic resistance, phosphorylation, mononucleotide
           binding fold; HET: ATP; 2.50A {Streptomyces venezuelae}
           SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A*
           1qhy_A*
          Length = 178

 Score = 35.0 bits (79), Expect = 0.064
 Identities = 17/129 (13%), Positives = 39/129 (30%), Gaps = 3/129 (2%)

Query: 500 AQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGS 559
             R I + G   +GKS ++  ++      ++       +++  P +   A   +      
Sbjct: 2   TTRMIILNGGSSAGKSGIVRCLQSVLPEPWL-AFGVDSLIEAMPLKMQSAEGGIEFDADG 60

Query: 560 RIVIISETNENDEINAAKIKQM--TGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVR 617
            + I  E    +   A  +  M   G   +   +  G   ++         +    + VR
Sbjct: 61  GVSIGPEFRALEGAWAEGVVAMARAGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVR 120

Query: 618 NPDDAWWRR 626
                   R
Sbjct: 121 CDGAVAEGR 129


>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1,
           nicotinic acid riboside kinase activity, NAD
           biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB:
           2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
          Length = 207

 Score = 33.9 bits (76), Expect = 0.15
 Identities = 23/166 (13%), Positives = 43/166 (25%), Gaps = 1/166 (0%)

Query: 493 ALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS 552
            L+        I I GV  SGK+TL   ++    N  VI+ +     ++           
Sbjct: 13  GLVPRGSKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFKPESEIETDKNGFLQ 72

Query: 553 LIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612
              L    +  +         +A      T  +                       + N+
Sbjct: 73  YDVLEALNMEKMMSAISCWMESARHSVVSTDQESAEEIPILIIEGFLLFNYKPLDTIWNR 132

Query: 613 HLFVR-NPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKK 657
             F+    ++   RR   +                +  KY  E + 
Sbjct: 133 SYFLTIPYEECKRRRSTRVYQPPDSPGYFDGHVWPMYLKYRQEMQD 178


>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus
           abyssi}
          Length = 350

 Score = 33.4 bits (74), Expect = 0.21
 Identities = 18/180 (10%), Positives = 41/180 (22%)

Query: 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMG 558
           +      + G+   GKS+L+           +   E      +   E             
Sbjct: 29  ENYPLTLLLGIRRVGKSSLLRAFLNERPGILIDCRELYAERGHITREELIKELQSTISPF 88

Query: 559 SRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRN 618
            +     + + N +    + ++++  +      + G    E   +F        +     
Sbjct: 89  QKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGG 148

Query: 619 PDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEV 678
            +      Y              S    L     +   +  L G  A        D    
Sbjct: 149 KELLALFAYAYDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTS 208


>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex,
           transferase; HET: DTP; 2.80A {Homo sapiens} SCOP:
           c.37.1.1
          Length = 241

 Score = 32.7 bits (73), Expect = 0.35
 Identities = 11/54 (20%), Positives = 19/54 (35%)

Query: 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIR 555
           R + I G    GKST + L+   +   +V     +     +     KA  +   
Sbjct: 3   RRLSIEGNIAVGKSTFVKLLTKTYPEWHVATEPVATWQNIQAAGNQKACTAQSL 56


>3iyt_A APAF-1, apoptotic protease-activating factor 1; apoptosome,
           procaspase-9 CARD, apoptosis; HET: ATP; 9.50A {Homo
           sapiens}
          Length = 1263

 Score = 32.5 bits (73), Expect = 0.39
 Identities = 8/29 (27%), Positives = 11/29 (37%)

Query: 493 ALLGGNKAQRFIHIRGVGGSGKSTLMNLI 521
            L        ++ I G+ G GKS L    
Sbjct: 145 KLSKLKGEPGWVTIHGMAGCGKSVLAAEA 173


>2rhm_A Putative kinase; ZP_00765535.1, structural genomics, joint center
           for structural genomics, JCSG, protein structure
           initiative; HET: MSE; 1.70A {Chloroflexus aurantiacus
           j-10-fl}
          Length = 193

 Score = 32.0 bits (71), Expect = 0.52
 Identities = 17/125 (13%), Positives = 38/125 (30%), Gaps = 6/125 (4%)

Query: 497 GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRL 556
           G +    I + G   +GK+TL   +        +         +      G ++    R 
Sbjct: 1   GMQTPALIIVTGHPATGKTTLSQALATGLRLPLL---SKDAFKEVMFDGLGWSDREWSRR 57

Query: 557 MGSRIVIISETNENDEINAAKIKQMTGG---DCMTARLNYGNTYSESPASFTPFIVPNKH 613
           +G+  +++        + + +   M      D  T R+   +T +         +     
Sbjct: 58  VGATAIMMLYHTAATILQSGQSLIMESNFRVDLDTERMQNLHTIAPFTPIQIRCVASGDV 117

Query: 614 LFVRN 618
           L  R 
Sbjct: 118 LVERI 122


>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW,
           emerald biostructures, ALS collaborative
           crystallography, ATP-binding; 2.15A {Ehrlichia
           chaffeensis}
          Length = 223

 Score = 31.7 bits (71), Expect = 0.61
 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 4/54 (7%)

Query: 503 FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRL 556
           FI   G+ GSGK+T  +L+       Y +    ++++  R P     N S+  L
Sbjct: 23  FITFEGIDGSGKTTQSHLLAEYLSEIYGV----NNVVLTREPGGTLLNESVRNL 72


>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo
           sapiens}
          Length = 322

 Score = 31.4 bits (70), Expect = 0.70
 Identities = 29/188 (15%), Positives = 54/188 (28%), Gaps = 2/188 (1%)

Query: 496 GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIR 555
           G     R I + G  G+GKS L   +     N    +  +SD++     E+ K   +L +
Sbjct: 40  GKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQ 99

Query: 556 LMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLF 615
           L       I   +E D +  ++ +  +                         +V      
Sbjct: 100 LARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQ-GVGVDNDGILVLGATNI 158

Query: 616 VRNPDDAWWRRYIVI-PFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD 674
               D A  RR+        P  +  A+  +           +   + +          D
Sbjct: 159 PWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGAD 218

Query: 675 IPEVCLKA 682
           I  +   A
Sbjct: 219 ISIIVRDA 226


>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system
           kinase, structural genomics, joint center for structural
           genomics, JCSG; 1.95A {Silicibacter SP}
          Length = 208

 Score = 31.6 bits (70), Expect = 0.74
 Identities = 27/176 (15%), Positives = 47/176 (26%), Gaps = 3/176 (1%)

Query: 494 LLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL 553
           L      ++ + + G  GSGKSTL N +  A   Q +          +      +    L
Sbjct: 15  LDPRQPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNRLLEPRGLL 74

Query: 554 IRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKH 613
            R                     + + +         +         P      I  N  
Sbjct: 75  PRKGAPETFDFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYL 134

Query: 614 LFVRNPDDAWWRRYIVIPF-DKPIANRDASFAQK-LETKYTLE-AKKWFLKGVKAY 666
           LF           + V    + P+A+ +A   Q+ L+     + A         A 
Sbjct: 135 LFDAPGWRDLTAIWDVSIRLEVPMADLEARLVQRWLDHGLNHDAAVARAQGNDLAN 190


>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
           vesicle, membrane, Ca structural protein; 7.94A {Bos
           taurus}
          Length = 190

 Score = 31.4 bits (70), Expect = 0.78
 Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 12/73 (16%)

Query: 676 PEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYRE-QELNYDRKRIS 734
           PE   K +EE+R+        +D    + E  W E     K   E+ + Q    ++ +I+
Sbjct: 84  PESIRKWREEQRKRLQE----LDAASKVMEQEWREKAK--KDLEEWNQRQSEQVEKNKIN 137

Query: 735 TRTVTLNLKQKGF 747
            R     +  K F
Sbjct: 138 NR-----IADKAF 145



 Score = 28.0 bits (61), Expect = 7.6
 Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 21/60 (35%)

Query: 704 GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSK 763
            + L +E  S+ K    +RE++    RKR+      L+   K          +E+EW+ K
Sbjct: 77  ADRLTQEPESIRK----WREEQ----RKRLQE----LDAASK---------VMEQEWREK 115


>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein,
           nucleotide-binding, zinc-binding domain, SOS response,
           metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans}
           PDB: 2vf8_A*
          Length = 842

 Score = 30.9 bits (69), Expect = 1.0
 Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 1/30 (3%)

Query: 502 RFIHIRGVGGSGKSTLMNLIKYAFGN-QYV 530
             +   GV GSGKS+L     YA    +Y+
Sbjct: 37  ALVVFTGVSGSGKSSLAFGTLYAEAQRRYL 66


>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP;
           2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
          Length = 271

 Score = 31.0 bits (70), Expect = 1.2
 Identities = 8/23 (34%), Positives = 12/23 (52%)

Query: 499 KAQRFIHIRGVGGSGKSTLMNLI 521
              +   + G  GSGKST+  L+
Sbjct: 43  YPGKVTALVGPNGSGKSTVAALL 65


>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance
           regulator, residues 1193-1427...; CFTR, ABC transporter,
           nucleotide binding domain, NBD; HET: B44; 2.70A {Homo
           sapiens}
          Length = 390

 Score = 30.9 bits (70), Expect = 1.2
 Identities = 8/15 (53%), Positives = 11/15 (73%), Gaps = 2/15 (13%)

Query: 509 VG--GSGKSTLMNLI 521
           +G  GSGKSTL++  
Sbjct: 53  LGRTGSGKSTLLSAF 67


>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural
           genomics, PSI, protein structure initiative; 3.20A
           {Agrobacterium tumefaciens str} SCOP: c.37.1.25
          Length = 191

 Score = 30.8 bits (68), Expect = 1.3
 Identities = 9/36 (25%), Positives = 15/36 (41%)

Query: 495 LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530
           +  +     + + G  GSGKST+   +    G   V
Sbjct: 3   MTDDLGGNILLLSGHPGSGKSTIAEALANLPGVPKV 38


>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP;
           1.50A {Salmonella typhimurium} SCOP: c.37.1.12
          Length = 262

 Score = 30.6 bits (69), Expect = 1.3
 Identities = 15/65 (23%), Positives = 35/65 (53%), Gaps = 3/65 (4%)

Query: 503 FIHIRGVGGSGKSTLMNLI---KYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGS 559
            I I G  GSGKST +  I   +       ++N +  ++++++  +   A+ + +RL+ +
Sbjct: 34  VISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRT 93

Query: 560 RIVII 564
           R+ ++
Sbjct: 94  RLTMV 98


>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC,
           cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo
           sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B*
           2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A*
           2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A*
           2zi7_B* 2zia_A* 2zi3_A* ...
          Length = 263

 Score = 30.7 bits (68), Expect = 1.4
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQYVI 531
           + I I G   +GKST +N++K    +  V+
Sbjct: 25  KKISIEGNIAAGKSTFVNILKQLCEDWEVV 54


>1e69_A Chromosome segregation SMC protein; structural maintenance of
           chromosomes, coiled coil; 3.1A {Thermotoga maritima}
           SCOP: c.37.1.12
          Length = 322

 Score = 30.5 bits (67), Expect = 1.4
 Identities = 13/27 (48%), Positives = 17/27 (62%)

Query: 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQ 528
           R   I G  GSGKS +++ IK+ FG Q
Sbjct: 25  RVTAIVGPNGSGKSNIIDAIKWVFGEQ 51


>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD,
           transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP:
           c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
          Length = 252

 Score = 30.4 bits (67), Expect = 1.5
 Identities = 15/123 (12%), Positives = 36/123 (29%), Gaps = 1/123 (0%)

Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVI 563
           I + G   SGKS++   I    G Q  ++     ++        +   S  +    +   
Sbjct: 25  IGVSGGTASGKSSVCAKIVQLLG-QNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKGQF 83

Query: 564 ISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAW 623
             +  +  +            +  T ++   +  S S    T  + P   +        +
Sbjct: 84  NFDHPDAFDNELILKTLKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFY 143

Query: 624 WRR 626
            + 
Sbjct: 144 SQE 146


>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A
           {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A*
           1tmk_A*
          Length = 216

 Score = 30.7 bits (68), Expect = 1.5
 Identities = 20/172 (11%), Positives = 46/172 (26%), Gaps = 16/172 (9%)

Query: 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRI 561
           + I I G+  +GK+T  N++         +            PE       LI    +  
Sbjct: 6   KLILIEGLDRTGKTTQCNILYKKLQPNCKLLKF---------PERSTRIGGLINEYLTDD 56

Query: 562 VIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK-----HLFV 616
                      + +A   ++                     S   +            + 
Sbjct: 57  SFQLSDQAIHLLFSANRWEIVDKIKKDLLEGKNIVMDRYVYSGVAYSAAKGTNGMDLDWC 116

Query: 617 RNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYIS 668
             PD    +  + +       + +A  +   + +Y  E  K+  K  + ++ 
Sbjct: 117 LQPDVGLLKPDLTLFLSTQDVDNNAEKSGFGDERY--ETVKFQEKVKQTFMK 166


>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
           biosynthesis, nucleotide-binding, phosphorylation, RNA-
           binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
           cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
          Length = 986

 Score = 30.4 bits (68), Expect = 1.5
 Identities = 21/92 (22%), Positives = 33/92 (35%), Gaps = 8/92 (8%)

Query: 508 GVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLI-------RLMGSR 560
           G  G GKSTLM  I     + +    E   +      +   ++ S++             
Sbjct: 468 GPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDIDGTHSDTSVLDFVFESGVGTKEA 527

Query: 561 IV-IISETNENDEINAAKIKQMTGGDCMTARL 591
           I   + E    DE+ A  I  ++GG  M   L
Sbjct: 528 IKDKLIEFGFTDEMIAMPISALSGGWKMKLAL 559


>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug
           gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A
           {Herpes simplex virus} SCOP: c.37.1.1
          Length = 376

 Score = 30.4 bits (68), Expect = 1.5
 Identities = 7/30 (23%), Positives = 13/30 (43%)

Query: 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQYVI 531
             ++I G  G GK+T   L+        ++
Sbjct: 50  LRVYIDGPHGMGKTTTTQLLVALGSRDDIV 79


>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette,
           hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
          Length = 279

 Score = 30.4 bits (68), Expect = 1.6
 Identities = 7/19 (36%), Positives = 14/19 (73%)

Query: 503 FIHIRGVGGSGKSTLMNLI 521
              + G+ G+GK+TL+N++
Sbjct: 49  KWILYGLNGAGKTTLLNIL 67


>1kht_A Adenylate kinase; phosphotransferase, signaling protein,
           transferase; HET: AMP; 2.50A {Methanococcus voltae}
           SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
          Length = 192

 Score = 30.2 bits (67), Expect = 1.6
 Identities = 20/176 (11%), Positives = 45/176 (25%), Gaps = 11/176 (6%)

Query: 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQ---YVINAEASDIMQNRPPEAGKANPSLIRLMG 558
           + + + GV G G +T   L       +   Y + +  S + +    E   ++   +R M 
Sbjct: 4   KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQMRKMD 63

Query: 559 SRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVR- 617
                  +     +I     +     D  +            P+     + P+  + V  
Sbjct: 64  PETQKRIQKMAGRKIAEMAKESPVAVDTHSTVSTPKGYLPGLPSWVLNELNPDLIIVVET 123

Query: 618 NPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDV 673
             D+   RR            R          +      +             + +
Sbjct: 124 TGDEILMRR-------MSDETRVRDLDTASTIEQHQFMNRCAAMSYGVLTGATVKI 172


>2yz2_A Putative ABC transporter ATP-binding protein TM_0222; cobalt
           transport, hydrolase, inner membrane, membrane,
           nucleotide- binding; 2.30A {Thermotoga maritima MSB8}
          Length = 266

 Score = 30.2 bits (68), Expect = 1.6
 Identities = 8/19 (42%), Positives = 13/19 (68%)

Query: 503 FIHIRGVGGSGKSTLMNLI 521
            + + G  GSGKSTL+ ++
Sbjct: 35  CLLVAGNTGSGKSTLLQIV 53


>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop,
           transferase; HET: ADP; 2.33A {Enterobacteria phage T4}
           SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A*
           2ia5_A
          Length = 301

 Score = 30.4 bits (68), Expect = 1.6
 Identities = 11/33 (33%), Positives = 13/33 (39%)

Query: 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
           ++ I   G  GSGKST            Y IN 
Sbjct: 2   KKIILTIGCPGSGKSTWAREFIAKNPGFYNINR 34


>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta
           protein., structural genomics, PSI-2, protein structure
           initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB:
           2axp_A*
          Length = 173

 Score = 30.3 bits (67), Expect = 1.6
 Identities = 5/41 (12%), Positives = 10/41 (24%)

Query: 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542
             I + G     KST+   +        +  +         
Sbjct: 2   TLIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELAKSGN 42


>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A
           {Enterobacteria phage T4} SCOP: c.37.1.1
          Length = 181

 Score = 30.2 bits (67), Expect = 1.9
 Identities = 11/33 (33%), Positives = 13/33 (39%)

Query: 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533
           ++ I   G  GSGKST            Y IN 
Sbjct: 2   KKIILTIGCPGSGKSTWAREFIAKNPGFYNINR 34


>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter,
           ABCB6, nucleotide binding domain, heme BIOS transport
           protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A*
           3nhb_A*
          Length = 306

 Score = 30.0 bits (68), Expect = 1.9
 Identities = 8/15 (53%), Positives = 12/15 (80%), Gaps = 2/15 (13%)

Query: 509 VG--GSGKSTLMNLI 521
           VG  G+GKST++ L+
Sbjct: 86  VGPSGAGKSTILRLL 100


>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease
           protein; asymmetric dimer, tetramer, P-glycoprotein;
           HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
          Length = 243

 Score = 30.2 bits (68), Expect = 1.9
 Identities = 8/23 (34%), Positives = 12/23 (52%)

Query: 499 KAQRFIHIRGVGGSGKSTLMNLI 521
           +    I   G  G GKST+ +L+
Sbjct: 26  QPNSIIAFAGPSGGGKSTIFSLL 48


>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB;
           ABC-transporter, transport protein; HET: ADP; 1.60A
           {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A*
           2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
          Length = 247

 Score = 30.2 bits (68), Expect = 2.0
 Identities = 13/23 (56%), Positives = 13/23 (56%)

Query: 499 KAQRFIHIRGVGGSGKSTLMNLI 521
           K    I I G  GSGKSTL  LI
Sbjct: 33  KQGEVIGIVGRSGSGKSTLTKLI 55


>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid
           herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A*
           1p75_A*
          Length = 334

 Score = 30.0 bits (67), Expect = 2.0
 Identities = 9/29 (31%), Positives = 13/29 (44%)

Query: 503 FIHIRGVGGSGKSTLMNLIKYAFGNQYVI 531
            I++ GV G GKST   ++  A       
Sbjct: 9   RIYLDGVYGIGKSTTGRVMASAASGGSPT 37


>2cbz_A Multidrug resistance-associated protein 1; ABC proteins,
           MRP1/ABCC1, nucleotide-binding domain, ATP- binding,
           hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
          Length = 237

 Score = 29.9 bits (67), Expect = 2.0
 Identities = 6/23 (26%), Positives = 12/23 (52%)

Query: 499 KAQRFIHIRGVGGSGKSTLMNLI 521
                + + G  G GKS+L++ +
Sbjct: 29  PEGALVAVVGQVGCGKSSLLSAL 51


>1l2t_A Hypothetical ABC transporter ATP-binding protein MJ0796; ABC
           transporters, ATPase, walker-A, NBD, transport protein;
           HET: ATP; 1.90A {Methanocaldococcus jannaschii} SCOP:
           c.37.1.12 PDB: 1f3o_A*
          Length = 235

 Score = 30.2 bits (68), Expect = 2.0
 Identities = 11/19 (57%), Positives = 15/19 (78%)

Query: 503 FIHIRGVGGSGKSTLMNLI 521
           F+ I G  GSGKST++N+I
Sbjct: 33  FVSIMGPSGSGKSTMLNII 51


>2pze_A Cystic fibrosis transmembrane conductance regulator; NBD, ABC
           transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo
           sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A
           1ckz_A
          Length = 229

 Score = 30.2 bits (68), Expect = 2.0
 Identities = 6/23 (26%), Positives = 15/23 (65%)

Query: 499 KAQRFIHIRGVGGSGKSTLMNLI 521
           +  + + + G  G+GK++L+ +I
Sbjct: 32  ERGQLLAVAGSTGAGKTSLLMMI 54


>1nn5_A Similar to deoxythymidylate kinase (thymidylate kinase); P-loop,
           D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens}
           SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A*
           1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A*
           1e2f_A* 1nn3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A*
           1e9f_A*
          Length = 215

 Score = 30.1 bits (67), Expect = 2.1
 Identities = 8/29 (27%), Positives = 11/29 (37%)

Query: 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530
             I + GV  +GKST    +  A      
Sbjct: 10  ALIVLEGVDRAGKSTQSRKLVEALCAAGH 38


>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta
           motif, beta sandwich, ligand binding protein; 1.90A
           {Alicyclobacillus acidocaldarius}
          Length = 355

 Score = 29.8 bits (67), Expect = 2.2
 Identities = 8/19 (42%), Positives = 13/19 (68%)

Query: 503 FIHIRGVGGSGKSTLMNLI 521
            + + G  GSGK+T++ LI
Sbjct: 43  MVGLLGPSGSGKTTILRLI 61


>2awn_A Maltose/maltodextrin import ATP-binding protein MALK; ATP-binding
           cassette, transport protein; HET: ADP; 2.30A
           {Escherichia coli K12} SCOP: b.40.6.3 c.37.1.12 PDB:
           1q1e_A 1q12_A* 2awo_A* 3fh6_A 2r6g_A* 1q1b_A
          Length = 381

 Score = 29.8 bits (67), Expect = 2.2
 Identities = 9/19 (47%), Positives = 12/19 (63%)

Query: 503 FIHIRGVGGSGKSTLMNLI 521
           F+   G  G GKSTL+ +I
Sbjct: 31  FVVFVGPSGCGKSTLLRMI 49


>2vli_A Antibiotic resistance protein; transferase, tunicamycin,
           phosphotransferase; 1.95A {Deinococcus radiodurans}
          Length = 183

 Score = 30.0 bits (66), Expect = 2.2
 Identities = 17/141 (12%), Positives = 34/141 (24%), Gaps = 6/141 (4%)

Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYV----INAEASDIMQNRPPEAGKANPSLIRLMGS 559
           I I G  G GK+   + +       +V       +A   +        + +P  I LM  
Sbjct: 8   IWINGPFGVGKTHTAHTLHERLPGSFVFEPEEMGQALRKLTPGFSGDPQEHPMWIPLMLD 67

Query: 560 RIV-IISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRN 618
            +     E      +  +          M+   + G +           +V  +      
Sbjct: 68  ALQYASREAAGPLIVPVSISDTARHRRLMSGLKDRGLSVHHFTLIAPLNVVLERLRRDGQ 127

Query: 619 PDDAW-WRRYIVIPFDKPIAN 638
           P          +         
Sbjct: 128 PQVNVGTVEDRLNELRGEQFQ 148


>2p67_A LAO/AO transport system kinase; ARGK, structural genomics, PSI-2,
           protein structure initiative; 1.80A {Escherichia coli
           K12} SCOP: c.37.1.10
          Length = 341

 Score = 29.9 bits (66), Expect = 2.3
 Identities = 8/37 (21%), Positives = 13/37 (35%), Gaps = 1/37 (2%)

Query: 504 IHIRGVGGSGKSTLMN-LIKYAFGNQYVINAEASDIM 539
           + + G  G+GKST +             +   A D  
Sbjct: 59  LGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPS 95


>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding,
           structural genomics, NPPSFA; HET: 1PE PGE EPE PG4; 1.60A
           {Sulfolobus tokodaii str}
          Length = 213

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 9/30 (30%), Positives = 14/30 (46%)

Query: 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQYVI 531
             I   G+ GSGKS+   L+K     +  +
Sbjct: 5   VLIAFEGIDGSGKSSQATLLKDWIELKRDV 34


>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway,
           P-loop protein, transferase; 1.8A {Erwinia chrysanthemi}
           SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
          Length = 173

 Score = 29.9 bits (66), Expect = 2.4
 Identities = 15/85 (17%), Positives = 26/85 (30%), Gaps = 6/85 (7%)

Query: 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRI 561
             I + G  G G +T+   +  A G ++V      D        +G     ++   G   
Sbjct: 3   EPIFMVGARGCGMTTVGRELARALGYEFV------DTDIFMQHTSGMTVADVVAAEGWPG 56

Query: 562 VIISETNENDEINAAKIKQMTGGDC 586
               E+     +        TGG  
Sbjct: 57  FRRRESEALQAVATPNRVVATGGGM 81


>2ghi_A Transport protein; multidrug resistance protein, MDR, structural
           genomics, structural genomics consortium, SGC; 2.20A
           {Plasmodium yoelii yoelii str}
          Length = 260

 Score = 29.8 bits (67), Expect = 2.4
 Identities = 8/23 (34%), Positives = 12/23 (52%)

Query: 499 KAQRFIHIRGVGGSGKSTLMNLI 521
            +     + G  GSGKST+  L+
Sbjct: 44  PSGTTCALVGHTGSGKSTIAKLL 66


>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis,
           ATP-binding, nucleotide-binding, poxvirus, transferase;
           HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB:
           2w0s_A*
          Length = 204

 Score = 29.9 bits (66), Expect = 2.4
 Identities = 7/29 (24%), Positives = 11/29 (37%)

Query: 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530
             I   G+  SGK+T    I  +     +
Sbjct: 5   ALIVFEGLDKSGKTTQCMNIMESIPANTI 33


>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein
           structure initiative, northeast structural genomics
           consortium, NESG; 2.40A {Bacillus halodurans c-125}
           SCOP: c.37.1.25
          Length = 189

 Score = 29.6 bits (65), Expect = 2.5
 Identities = 9/35 (25%), Positives = 13/35 (37%)

Query: 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535
           ++   I G  G GKST    +     N   I  + 
Sbjct: 2   KKLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDI 36


>1sgw_A Putative ABC transporter; structural genomics, PSI, protein
           structure initiative, southeast collaboratory for
           structural genomics; 1.70A {Pyrococcus furiosus dsm
           3638} SCOP: c.37.1.12
          Length = 214

 Score = 29.5 bits (66), Expect = 2.6
 Identities = 7/19 (36%), Positives = 11/19 (57%)

Query: 503 FIHIRGVGGSGKSTLMNLI 521
            ++  G  G GK+TL+  I
Sbjct: 37  VVNFHGPNGIGKTTLLKTI 55


>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle
           structural genomics center for infectious disease,
           ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium
           tuberculosis} PDB: 3md0_A* 3nxs_A*
          Length = 355

 Score = 29.8 bits (66), Expect = 2.7
 Identities = 10/37 (27%), Positives = 15/37 (40%)

Query: 493 ALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529
            LL  +     + I GV G GKST +  +      + 
Sbjct: 71  RLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIERG 107


>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein,
           feedback inhibition, deoxyribonucleoside kinase, salvage
           pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP:
           c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A*
           2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A*
           1zm7_A* 1zmx_A*
          Length = 230

 Score = 29.6 bits (65), Expect = 2.7
 Identities = 8/34 (23%), Positives = 15/34 (44%)

Query: 498 NKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVI 531
                 + I G  GSGK+T +N  +    +  ++
Sbjct: 17  GTQPFTVLIEGNIGSGKTTYLNHFEKYKNDICLL 50


>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding
           cassette, transport protein; HET: ATP; 2.05A {Homo
           sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 1r0w_A
           1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
          Length = 290

 Score = 29.5 bits (66), Expect = 2.7
 Identities = 6/23 (26%), Positives = 15/23 (65%)

Query: 499 KAQRFIHIRGVGGSGKSTLMNLI 521
           +  + + + G  G+GK++L+ +I
Sbjct: 62  ERGQLLAVAGSTGAGKTSLLMMI 84


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
           photosynthetic reaction center, peripheral antenna; HET:
           CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 29.6 bits (65), Expect = 2.7
 Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 13/41 (31%)

Query: 645 QKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEE 685
           Q L+ K  L+A       +K Y     D   P + +KA  E
Sbjct: 20  QALK-K--LQAS------LKLYA----DDSAPALAIKATME 47


>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase,
           ATP-binding cassette, ATPase, transport protein; 1.45A
           {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB:
           1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
          Length = 353

 Score = 29.8 bits (67), Expect = 2.7
 Identities = 8/19 (42%), Positives = 11/19 (57%)

Query: 503 FIHIRGVGGSGKSTLMNLI 521
              I G  G+GK+T M +I
Sbjct: 33  RFGILGPSGAGKTTFMRII 51


>1g6h_A High-affinity branched-chain amino acid transport ATP-binding
           protein; beta-core domain; HET: ADP; 1.60A
           {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB:
           1gaj_A 1g9x_A*
          Length = 257

 Score = 29.5 bits (66), Expect = 2.7
 Identities = 11/19 (57%), Positives = 13/19 (68%)

Query: 503 FIHIRGVGGSGKSTLMNLI 521
              I G  GSGKSTL+N+I
Sbjct: 35  VTLIIGPNGSGKSTLINVI 53


>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative
           iron chelatin ABC transporter, nucleotide binding
           domain; 2.40A {Haemophilus influenzae}
          Length = 253

 Score = 29.6 bits (66), Expect = 2.8
 Identities = 8/19 (42%), Positives = 13/19 (68%)

Query: 503 FIHIRGVGGSGKSTLMNLI 521
            + + G  G GKSTL++L+
Sbjct: 33  ILAVLGQNGCGKSTLLDLL 51


>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein;
           ATP-binding, nucleotide-binding, membrane,
           transmembrane, transport protein; 3.00A {Methanosarcina
           acetivorans} SCOP: b.40.6.3 c.37.1.12
          Length = 348

 Score = 29.4 bits (66), Expect = 2.8
 Identities = 7/19 (36%), Positives = 11/19 (57%)

Query: 503 FIHIRGVGGSGKSTLMNLI 521
           +  I G  G+GK+  + LI
Sbjct: 28  YFVILGPTGAGKTLFLELI 46


>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation,
           ADP, nucleotide binding, CARD, apoptosis; HET: ADP;
           2.21A {Homo sapiens}
          Length = 591

 Score = 29.5 bits (65), Expect = 2.9
 Identities = 8/26 (30%), Positives = 11/26 (42%)

Query: 493 ALLGGNKAQRFIHIRGVGGSGKSTLM 518
            L        ++ I G+ G GKS L 
Sbjct: 139 KLSKLKGEPGWVTIHGMAGCGKSVLA 164


>2hyd_A ABC transporter homolog; transport protein; HET: ADP; 3.00A
           {Staphylococcus aureus} SCOP: c.37.1.12 f.37.1.1 PDB:
           2onj_A*
          Length = 578

 Score = 29.7 bits (66), Expect = 2.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)

Query: 499 KAQRFIHIRGVGGSGKSTLMNLI 521
           +    +   G+ G GKSTL+NLI
Sbjct: 365 EKGETVAFVGMSGGGKSTLINLI 387


>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding
           protein; structural genomics, NPPSFA; 1.94A {Pyrococcus
           horikoshii}
          Length = 362

 Score = 29.5 bits (66), Expect = 2.9
 Identities = 10/19 (52%), Positives = 13/19 (68%)

Query: 503 FIHIRGVGGSGKSTLMNLI 521
           F+ + G  GSGKSTL+  I
Sbjct: 31  FMALLGPSGSGKSTLLYTI 49


>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP
           phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium
           tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A*
           1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A*
           1w2h_A*
          Length = 214

 Score = 29.5 bits (65), Expect = 3.0
 Identities = 11/26 (42%), Positives = 14/26 (53%)

Query: 503 FIHIRGVGGSGKSTLMNLIKYAFGNQ 528
            I I GV G+GK TL+  +  AF   
Sbjct: 2   LIAIEGVDGAGKRTLVEKLSGAFRAA 27


>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292;
           mixed alpha-beta protein, rossman fold, signaling
           protein, transferase; 1.40A {Aquifex aeolicus} SCOP:
           c.37.1.11
          Length = 178

 Score = 29.5 bits (65), Expect = 3.0
 Identities = 9/18 (50%), Positives = 11/18 (61%)

Query: 504 IHIRGVGGSGKSTLMNLI 521
           I I G  G GK+TL+  I
Sbjct: 3   IIITGEPGVGKTTLVKKI 20


>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane
           protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
          Length = 240

 Score = 29.6 bits (66), Expect = 3.0
 Identities = 7/19 (36%), Positives = 11/19 (57%)

Query: 503 FIHIRGVGGSGKSTLMNLI 521
           +  + G  G+GKS  + LI
Sbjct: 26  YCVLLGPTGAGKSVFLELI 44


>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic
            peptide, membrane protein; 3.80A {Mus musculus} PDB:
            3g61_A* 3g60_A*
          Length = 1284

 Score = 29.6 bits (66), Expect = 3.1
 Identities = 8/23 (34%), Positives = 14/23 (60%)

Query: 499  KAQRFIHIRGVGGSGKSTLMNLI 521
            K  + + + G  G GKST++ L+
Sbjct: 1057 KKGQTLALVGSSGCGKSTVVQLL 1079


>2fna_A Conserved hypothetical protein; 13814777, structural genomics,
           joint center for structural genomics, JCSG; HET: MSE
           ADP; 2.00A {Sulfolobus solfataricus P2} SCOP: a.4.5.11
           c.37.1.20
          Length = 357

 Score = 29.5 bits (64), Expect = 3.2
 Identities = 5/47 (10%), Positives = 17/47 (36%), Gaps = 1/47 (2%)

Query: 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYV-INAEASDIMQNRPPEA 546
                + G+  +GKS+++ +        Y+ ++    +       + 
Sbjct: 30  APITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKD 76


>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase;
           HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A*
           2jas_A*
          Length = 205

 Score = 29.4 bits (64), Expect = 3.2
 Identities = 10/28 (35%), Positives = 13/28 (46%)

Query: 503 FIHIRGVGGSGKSTLMNLIKYAFGNQYV 530
            I I G  G+GKST+   I    G +  
Sbjct: 2   KIAIFGTVGAGKSTISAEISKKLGYEIF 29


>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP:
           a.4.5.80 a.77.1.3 c.37.1.20
          Length = 549

 Score = 29.5 bits (65), Expect = 3.2
 Identities = 13/111 (11%), Positives = 33/111 (29%), Gaps = 3/111 (2%)

Query: 411 AGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFL 470
           A  +  +      ++   L +           +    + + I        ++ +     +
Sbjct: 65  ASELGPLIDFFNYNNQSHLADFLEDYIDFAINEPDLLRPVVIAPQFSRQMLDRKLLLGNV 124

Query: 471 DLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLI 521
                 +  E  +D   R +       +    F+ + G  GSGKS + +  
Sbjct: 125 PKQMTCYIREYHVD---RVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQA 172


>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding
           domain, ABC motor domain, ferric iron transport, cell
           inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
          Length = 359

 Score = 29.5 bits (66), Expect = 3.2
 Identities = 7/19 (36%), Positives = 11/19 (57%)

Query: 503 FIHIRGVGGSGKSTLMNLI 521
            + I G  G GK+TL+  +
Sbjct: 32  ILFIIGASGCGKTTLLRCL 50


>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
           lipid flippase, hydrolase, inner membrane, lipid
           transport, membrane; HET: ANP; 3.70A {Salmonella
           typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A*
           3b5z_A* 3b5w_A
          Length = 582

 Score = 29.3 bits (65), Expect = 3.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)

Query: 499 KAQRFIHIRGVGGSGKSTLMNLI 521
            A + + + G  GSGKST+ +LI
Sbjct: 367 PAGKTVALVGRSGSGKSTIASLI 389


>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI,
           protein structure initiative; 1.90A {Geobacillus
           stearothermophilus} SCOP: c.37.1.6
          Length = 201

 Score = 29.3 bits (64), Expect = 3.3
 Identities = 16/137 (11%), Positives = 28/137 (20%), Gaps = 1/137 (0%)

Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVI 563
           + I G+  SGK+TL N +      Q +                     +        +  
Sbjct: 25  LGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWFEYYYLQW 84

Query: 564 ISETNENDEINAAKIKQMTGGDCMTARLNY-GNTYSESPASFTPFIVPNKHLFVRNPDDA 622
             E   +      K              +           S    I              
Sbjct: 85  DVEWLTHQLFRQLKASHQLTLPFYDHETDTHSKRTVYLSDSDMIMIEGVFLQRKEWRPFF 144

Query: 623 WWRRYIVIPFDKPIANR 639
            +  Y+  P +   A  
Sbjct: 145 DFVVYLDCPREIRFARE 161


>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
           lipid flippase, hydrolase, inner membrane, lipid
           transport, membrane; 5.50A {Vibrio cholerae}
          Length = 582

 Score = 29.3 bits (65), Expect = 3.4
 Identities = 9/23 (39%), Positives = 13/23 (56%)

Query: 499 KAQRFIHIRGVGGSGKSTLMNLI 521
              + + + G  GSGKST+ NL 
Sbjct: 367 PQGKTVALVGRSGSGKSTIANLF 389


>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane,
           membrane, transmembrane, transport, ATP- binding,
           hydrolase, nucleotide-binding, periplasm; HET: 1PE;
           2.60A {Escherichia coli} PDB: 1l7v_C*
          Length = 249

 Score = 29.1 bits (65), Expect = 3.6
 Identities = 8/19 (42%), Positives = 13/19 (68%)

Query: 503 FIHIRGVGGSGKSTLMNLI 521
            +H+ G  G+GKSTL+  +
Sbjct: 28  ILHLVGPNGAGKSTLLARM 46


>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, infectious
           diseases, center for structural genomics of infectious
           diseases; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1
           biovar eltor} PDB: 3n2i_A*
          Length = 236

 Score = 29.2 bits (65), Expect = 3.8
 Identities = 9/21 (42%), Positives = 15/21 (71%)

Query: 502 RFIHIRGVGGSGKSTLMNLIK 522
           +FI I G+ G+GKST + ++ 
Sbjct: 28  KFIVIEGLEGAGKSTAIQVVV 48


>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha
           and beta proteins (A/B) class, TM0421, structural
           genomics, NPPSFA; 2.11A {Thermotoga maritima MSB8}
          Length = 359

 Score = 29.1 bits (65), Expect = 3.8
 Identities = 7/23 (30%), Positives = 13/23 (56%)

Query: 499 KAQRFIHIRGVGGSGKSTLMNLI 521
           K   F+ + G  G GK+T + ++
Sbjct: 27  KDGEFVALLGPSGCGKTTTLLML 49


>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A
           {Sulfolobus acidocaldarius} SCOP: c.37.1.1
          Length = 194

 Score = 29.2 bits (64), Expect = 3.9
 Identities = 9/29 (31%), Positives = 16/29 (55%)

Query: 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530
           +   + G+ G GKST++  +K    NQ +
Sbjct: 2   KIGIVTGIPGVGKSTVLAKVKEILDNQGI 30


>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
           hydrolyase/translation complex; HET: ADP; 1.90A
           {Pyrococcus furiosus}
          Length = 538

 Score = 28.9 bits (64), Expect = 4.1
 Identities = 7/19 (36%), Positives = 12/19 (63%)

Query: 503 FIHIRGVGGSGKSTLMNLI 521
            + I G  G+GKST + ++
Sbjct: 49  VVGIVGPNGTGKSTAVKIL 67


>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active
           transport, sugar uptake and regulation, transport
           protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3
           b.40.6.3 c.37.1.12 PDB: 1vci_A*
          Length = 372

 Score = 29.1 bits (65), Expect = 4.1
 Identities = 7/19 (36%), Positives = 12/19 (63%)

Query: 503 FIHIRGVGGSGKSTLMNLI 521
           F+ + G  G GK+T + +I
Sbjct: 39  FLVLLGPSGCGKTTTLRMI 57


>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and
           beta protein; HET: GSP; 1.90A {Methanocaldococcus
           jannaschii} PDB: 2hf8_A*
          Length = 226

 Score = 28.9 bits (63), Expect = 4.1
 Identities = 27/196 (13%), Positives = 56/196 (28%), Gaps = 16/196 (8%)

Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVI 563
               G  GSGK+ L+  +     ++Y I   A D++     E  + + + +  + +    
Sbjct: 41  FDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKEC 100

Query: 564 ISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAW 623
             + +      A +   +   D +                 T   +        +     
Sbjct: 101 HLDAHLVGH--ALEDLNLDEIDLLFIENVGNLICPADFDLGTHKRIVVISTTEGDDTIEK 158

Query: 624 WRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAK 683
               +       I   D             +A    +K ++    K ++ D   V L  K
Sbjct: 159 HPGIMKTADLIVINKIDL-----------ADAVGADIKKMENDA-KRINPDAEVVLLSLK 206

Query: 684 EEERQGTDTYQAWIDD 699
             E  G D    +I+ 
Sbjct: 207 TME--GFDKVLEFIEK 220


>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP;
           1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A*
           2wwi_A*
          Length = 212

 Score = 28.8 bits (64), Expect = 4.2
 Identities = 10/27 (37%), Positives = 13/27 (48%)

Query: 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQ 528
           +FI   G+  SGKST   L+     N 
Sbjct: 11  KFIVFEGLDRSGKSTQSKLLVEYLKNN 37


>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB);
           structural genomics, PSI, protein structure initiative;
           2.10A {Archaeoglobus fulgidus}
          Length = 171

 Score = 29.0 bits (63), Expect = 4.3
 Identities = 7/18 (38%), Positives = 11/18 (61%)

Query: 504 IHIRGVGGSGKSTLMNLI 521
           + I G   SGK+TL+  +
Sbjct: 5   LSIVGTSDSGKTTLITRM 22


>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
           cluster, adenosine diphosphate, nucleotide-binding; HET:
           ADP; 2.80A {Pyrococcus abyssi}
          Length = 607

 Score = 28.8 bits (64), Expect = 4.4
 Identities = 6/19 (31%), Positives = 12/19 (63%)

Query: 503 FIHIRGVGGSGKSTLMNLI 521
            + I G  G+GK+T + ++
Sbjct: 119 VVGIVGPNGTGKTTAVKIL 137


>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural
           genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
          Length = 263

 Score = 29.0 bits (65), Expect = 4.6
 Identities = 9/19 (47%), Positives = 12/19 (63%)

Query: 503 FIHIRGVGGSGKSTLMNLI 521
            + I G  GSGK+TL+  I
Sbjct: 32  KVIILGPNGSGKTTLLRAI 50


>2ccj_A DTMP kinase, thymidylate kinase; transferase, nucleotide
           biosynthesis, TMP-binding, ATP-binding; HET: TMP; 1.7A
           {Staphylococcus aureus} PDB: 2cck_A 2ccg_A*
          Length = 205

 Score = 28.8 bits (63), Expect = 4.7
 Identities = 10/28 (35%), Positives = 15/28 (53%)

Query: 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQY 529
            FI   G  GSGK+T++N + +     Y
Sbjct: 3   AFITFEGPEGSGKTTVINEVYHRLVKDY 30


>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase; HET:
           T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB:
           5tmp_A*
          Length = 213

 Score = 28.7 bits (63), Expect = 4.7
 Identities = 8/21 (38%), Positives = 15/21 (71%)

Query: 502 RFIHIRGVGGSGKSTLMNLIK 522
           ++I I G+ G+GK+T  N++ 
Sbjct: 4   KYIVIEGLEGAGKTTARNVVV 24


>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI,
           protein structure initiative, midwest center for
           structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga
           maritima} SCOP: c.37.1.12
          Length = 240

 Score = 28.6 bits (64), Expect = 4.9
 Identities = 6/19 (31%), Positives = 12/19 (63%)

Query: 503 FIHIRGVGGSGKSTLMNLI 521
            + + G  G+GK+T ++ I
Sbjct: 34  IVTLIGANGAGKTTTLSAI 52


>2wsm_A Hydrogenase expression/formation protein (HYPB); hydrogenase
           maturation factor, metal binding protein; 2.30A
           {Archaeoglobus fulgidus}
          Length = 221

 Score = 28.8 bits (63), Expect = 4.9
 Identities = 12/39 (30%), Positives = 19/39 (48%)

Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542
           ++I G  GSGK+ L+       GN+  I A   D++   
Sbjct: 33  VNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKA 71


>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA
           repair, ABC ATPase, ATP-binding cassette, cytoplasm;
           HET: ADP; 3.20A {Geobacillus stearothermophilus 10}
          Length = 972

 Score = 28.6 bits (63), Expect = 4.9
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%)

Query: 502 RFIHIRGVGGSGKSTLMNLIKYAFGN-QYV 530
           + + + G+ GSGKS+L     YA G  +YV
Sbjct: 45  KLVVLTGLSGSGKSSLAFDTIYAEGQRRYV 74


>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell
           membrane, cobalt transport, hydrolase, ION transport;
           2.30A {Clostridium perfringens atcc 13124}
          Length = 275

 Score = 28.6 bits (64), Expect = 5.1
 Identities = 8/19 (42%), Positives = 8/19 (42%)

Query: 503 FIHIRGVGGSGKSTLMNLI 521
              I G  G GKSTL    
Sbjct: 36  VTAILGGNGVGKSTLFQNF 54


>3dhw_C Methionine import ATP-binding protein METN; ABC-transporter,
           methionine uptake transporter, membrane protein,
           amino-acid transport; 3.70A {Escherichia coli K12} SCOP:
           c.37.1.12 d.58.18.13
          Length = 343

 Score = 28.6 bits (64), Expect = 5.8
 Identities = 7/19 (36%), Positives = 11/19 (57%)

Query: 503 FIHIRGVGGSGKSTLMNLI 521
              + G  G+GKSTL+  +
Sbjct: 33  IYGVIGASGAGKSTLIRCV 51


>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene
           therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes
           simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A*
           1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B*
           1ki7_A* 1ki8_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A*
           2vtk_A* 3vtk_A* 3f0t_A* 1e2l_A* ...
          Length = 331

 Score = 28.4 bits (63), Expect = 6.0
 Identities = 7/30 (23%), Positives = 13/30 (43%)

Query: 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQYVI 531
             ++I G  G GK+T   L+        ++
Sbjct: 5   LRVYIDGPHGMGKTTTTQLLVALGSRDDIV 34


>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces
           cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
          Length = 203

 Score = 28.4 bits (62), Expect = 6.1
 Identities = 20/148 (13%), Positives = 46/148 (31%), Gaps = 3/148 (2%)

Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVI 563
           I + G  G+GK T    +   +   ++    A D+++     AG     LI+       I
Sbjct: 18  IFVLGGPGAGKGTQCEKLVKDYSFVHL---SAGDLLRAEQGRAGSQYGELIKNCIKEGQI 74

Query: 564 ISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAW 623
           + +      +  A    +           +     ++ +     +     LF   P+D  
Sbjct: 75  VPQEITLALLRNAISDNVKANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDCPEDIM 134

Query: 624 WRRYIVIPFDKPIANRDASFAQKLETKY 651
             R +        ++ +    +K    +
Sbjct: 135 LERLLERGKTSGRSDDNIESIKKRFNTF 162


>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET:
           ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A*
           2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
          Length = 263

 Score = 28.2 bits (63), Expect = 6.3
 Identities = 7/19 (36%), Positives = 11/19 (57%)

Query: 503 FIHIRGVGGSGKSTLMNLI 521
            + + G  GSGKST +  +
Sbjct: 52  VVVVIGPSGSGKSTFLRCL 70


>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural genomics,
           joint center for structural genomics, JCSG; 2.10A
           {Thermotoga maritima MSB8} SCOP: c.37.1.12
          Length = 256

 Score = 28.4 bits (63), Expect = 6.7
 Identities = 6/19 (31%), Positives = 11/19 (57%)

Query: 503 FIHIRGVGGSGKSTLMNLI 521
              + G  G+GK+T + +I
Sbjct: 43  IFGLIGPNGAGKTTTLRII 61


>1jrm_A MTH0637, conserved hypothetical protein MTH637; alpha-beta protein,
           structural genomics, OCSP, NESG; NMR
           {Methanothermobacterthermautotrophicus} SCOP: d.206.1.1
          Length = 104

 Score = 28.1 bits (63), Expect = 6.8
 Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 4/27 (14%)

Query: 543 PPEAGKANPSLIRLM----GSRIVIIS 565
           PP+ GKAN  +I+      G  + I+S
Sbjct: 46  PPQKGKANREIIKEFSETFGRDVEIVS 72


>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET:
           BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
          Length = 341

 Score = 28.5 bits (63), Expect = 6.9
 Identities = 7/26 (26%), Positives = 11/26 (42%)

Query: 503 FIHIRGVGGSGKSTLMNLIKYAFGNQ 528
            I++ G  G GK+T      + F   
Sbjct: 14  RIYLDGAYGIGKTTAAEEFLHHFAIT 39


>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA
           binding, molecular switch, RECA, DMC1; HET: DNA; 1.93A
           {Sulfolobus solfataricus P2} PDB: 2bke_A* 2dfl_A*
           2zub_A* 2zuc_A* 2zud_A*
          Length = 324

 Score = 28.3 bits (62), Expect = 7.2
 Identities = 38/234 (16%), Positives = 65/234 (27%), Gaps = 25/234 (10%)

Query: 404 STAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEG 463
           +    L      S+   L  +S + L    GI  L T QK+       +     T     
Sbjct: 23  TVINKLIEAGYSSL-ETLAVASPQDLSVAAGI-PLSTAQKIIKEARDALDIRFKTALEVK 80

Query: 464 EPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLI-- 521
           +       + +G    + +           L GG + +      G  GSGK+ L + +  
Sbjct: 81  KERMNVKKISTGSQALDGL-----------LAGGIETRTMTEFFGEFGSGKTQLCHQLSV 129

Query: 522 -------KYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEIN 574
                  K     + V           R     KA    I  + + I  I   N + +I 
Sbjct: 130 NVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINTDHQIA 189

Query: 575 AAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYI 628
                Q       + +L          + F       ++L VR          +
Sbjct: 190 IVDDLQELVSKDPSIKL---IVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQL 240


>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein
           phosphatase, dual activity, product, substrate,
           transferase, hydrolase; 1.95A {Staphylococcus xylosus}
           SCOP: c.98.2.1 c.91.1.2
          Length = 314

 Score = 27.8 bits (62), Expect = 9.9
 Identities = 26/131 (19%), Positives = 47/131 (35%), Gaps = 23/131 (17%)

Query: 445 KPTKELY-ITKSTGTP-FVEGEPSQEFLDLVSGYFESE----EVMDYFTRCVGMALLGGN 498
           +P +EL    K   TP       + + +  ++ + E E      +      V + + G  
Sbjct: 91  EPPEELIEAAKEHETPLITSKIATTQLMSRLTTFLEHELARTTSLHG----VLVDVYG-- 144

Query: 499 KAQRFIHIRGVGGSGKSTLM-NLIKYAFG----NQYVINAEASDIMQNRPPEAGKANPSL 553
                + I G  G GKS     LIK        +   I   + D +  R P+  +    L
Sbjct: 145 ---VGVLITGDSGIGKSETALELIKRGHRLVADDNVEIREISKDELIGRAPKLIE---HL 198

Query: 554 IRLMGSRIVII 564
           + + G  I+ +
Sbjct: 199 LEIRGLGIINV 209


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.316    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0449    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 7,033,012
Number of extensions: 339922
Number of successful extensions: 1350
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1342
Number of HSP's successfully gapped: 131
Length of query: 789
Length of database: 5,693,230
Length adjustment: 100
Effective length of query: 689
Effective length of database: 3,268,830
Effective search space: 2252223870
Effective search space used: 2252223870
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.0 bits)