RPS-BLAST 2.2.22 [Sep-27-2009] Database: pdb70 24,244 sequences; 5,693,230 total letters Searching..................................................done Query= gi|254781225|ref|YP_003065638.1| P4 family phage/plasmid primase [Candidatus Liberibacter asiaticus str. psy62] (789 letters) >1ro2_A Hypothetical protein ORF904; DNA polymerase, primase, replication, polymerization, evolution of nucleic acid polymerizing enzymes; 1.60A {Sulfolobus islandicus} SCOP: d.264.1.2 PDB: 1ro0_A 1rni_A Length = 216 Score = 62.4 bits (151), Expect = 4e-10 Identities = 34/191 (17%), Positives = 66/191 (34%), Gaps = 24/191 (12%) Query: 8 EQAKQAIHNGFKLIPLRLGDKRP--QRLGKWEEQLLSSEKIDKL-----PACGFGFVCGV 60 AK + +GF +IP+ K+P + K+ ++ S E+ + + Sbjct: 6 RYAKWMLEHGFNIIPIDPESKKPVLKEWQKYSHEMPSDEEKQRFLKMIEEGYNYAIPG-- 63 Query: 61 GEQPLYAFDIDSKDEKTA-NTFKDTFEILHGTPIVRIGQKPKILIPFRMNKEGIKKKK-- 117 G++ + D +SK++ A E+ T I I N K Sbjct: 64 GQKGMVIMDFESKEKLKAWIGESALEELCRKTLCTNTVHGG-IHIYVLSNDIPPHKINPL 122 Query: 118 TTESTQGHLDILGCGQYFVA------YNIHPKTKKEYTW---TTPPHRFKVEDTPLLSEE 168 E+ +G +D+ Y + + K + TT + +S+ Sbjct: 123 FEENGKGIIDLQSYNSYVLGLGSCVNHLHCTTDKCPWKEQNYTTCY--TLYNELKEISKV 180 Query: 169 DVEYLFKFFQE 179 D++ L +F E Sbjct: 181 DLKSLLRFLAE 191 >1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A Length = 267 Score = 58.8 bits (142), Expect = 5e-09 Identities = 18/161 (11%), Positives = 36/161 (22%), Gaps = 26/161 (16%) Query: 485 YFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPP 544 Y + I + G +GK+ + I + +N Sbjct: 88 YAASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTVPFYGCVNWTNE-------- 139 Query: 545 EAGKANPSLIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASF 604 N + ++ E K + GG + ++ P Sbjct: 140 -----NFPFNDCVDKMVIWWEEGK-MTAKVVESAKAILGGSKVRVDQKCKSSAQIDP--- 190 Query: 605 TPFIV---------PNKHLFVRNPDDAWWRRYIVIPFDKPI 636 TP IV + + R + + Sbjct: 191 TPVIVTSNTNMCAVIDGNSTTFEHQQPLQDRMFKFELTRRL 231 >2pff_B Fatty acid synthase subunit beta; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl reductase, beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae} Length = 2006 Score = 49.9 bits (119), Expect = 2e-06 Identities = 53/333 (15%), Positives = 88/333 (26%), Gaps = 162/333 (48%) Query: 408 SLEAGSI-FSITSDLLDSSSRFLGEQ-------------DGI-LDLETGQKVKPTKELYI 452 +L GS+ + L+ ++S F+ Q +G D E EL Sbjct: 10 TLSHGSLEHVL---LVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPA----ELV- 61 Query: 453 TKSTGTPFV-----EGEPSQ--EFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIH 505 K G +V + Q + L+L FE+ + L GN IH Sbjct: 62 GKFLG--YVSSLVEPSKVGQFDQVLNLCLTEFENC-----Y--------LEGND----IH 102 Query: 506 --IRGVGGSGKSTLM---NLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS-LIRLMGS 559 + +TL+ LIK A + + K + S L R +G Sbjct: 103 ALAAKLLQENDTTLVKTKELIKNYI--------TARIMAKRPFD---KKSNSALFRAVGE 151 Query: 560 RIVIISETNENDEINAAKIKQMTGG-----DCMTA-RLNYGNTYSESPASFTPFIVP--- 610 A++ + GG D R Y TY + Sbjct: 152 --------------GNAQLVAIFGGQGNTDDYFEELRDLY-QTY-------HVLVGDLIK 189 Query: 611 --NKHL--FVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAY 666 + L +R DA +K F Sbjct: 190 FSAETLSELIRTTLDA---------------------------------EKVF------- 209 Query: 667 ISKGLDVDIPEVCLKAKEEERQGTDTYQAWIDD 699 ++GL++ W+++ Sbjct: 210 -TQGLNI--------------------LEWLEN 221 Score = 40.3 bits (94), Expect = 0.002 Identities = 29/161 (18%), Positives = 48/161 (29%), Gaps = 53/161 (32%) Query: 587 MTA---R---LNYGN-TYSESPASFTPFIVPNKHLFVRNP--DDAWWRRYIVIPFDKPIA 637 M A R L++G+ + +VP F+ + + F+K + Sbjct: 1 MDAYSTRPLTLSHGSLEHV--------LLVPTASFFIASQLQEQ----------FNKILP 42 Query: 638 NRDASFAQKLETKYTLE--AKKWFLKGVKAYI---SKGLDVDIPEVCLKAKEEERQGTDT 692 FA E E K FL V + + G + +CL E + Sbjct: 43 EPTEGFAADDEPTTPAELVGK--FLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGN- 99 Query: 693 YQAWIDDCCDIGENLWEESHSLAKSYSEYREQELNYDRKRI 733 DI H+LA + + L K + Sbjct: 100 ---------DI--------HALAAKLLQENDTTLV-KTKEL 122 Score = 36.5 bits (84), Expect = 0.022 Identities = 70/336 (20%), Positives = 119/336 (35%), Gaps = 93/336 (27%) Query: 59 GVGEQPLYAFDIDSKD--EKTANTFKDT--FEILHGTPIVRIGQKPKILIPFRMNKEGIK 114 G+G LY ++D + N FKDT F IL IV I + I F G K Sbjct: 1630 GMG-MDLYKTSKAAQDVWNRADNHFKDTYGFSILD---IV-INNPVNLTIHF----GGEK 1680 Query: 115 KKKTTESTQGHL------DILGCGQYFVAYNIHPKTKKEYTWTTPPHRFKVEDTPLLSEE 168 K+ E+ + L + F N H + YT F+ E L + + Sbjct: 1681 GKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTS---YT-------FRSEKGLLSATQ 1730 Query: 169 DVEYLFKFFQEITVPLVKDKKSIIPSK-TWTNNNNRQYTN----REITAFLSCFGEEFYN 223 + ++ +K K +IP+ T+ ++ +Y ++ + S FY Sbjct: 1731 FTQPALTLMEKAAFEDLK-SKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYR 1789 Query: 224 GSHDEWIPVVMAVHHETRGSSKGKEIARRWSKQGSTYDEENFNYKWDTFDFEEIGDTAKK 283 G + + +AV + G S IA + +++ +E Y E +G K Sbjct: 1790 G-----MTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYV-----VERVG----K 1835 Query: 284 RSTFTSLFYHHGKLIPKGLLASRFSDAYNKAMFSIYKKGHFLYTADTKAWYKKDKNNVYI 343 R+ G L + YN + ++ D +A Sbjct: 1836 RT---------------GWLVEIVN--YN------VENQQYVAAGDLRA----------- 1861 Query: 344 WSLTLDKITASIMNFLVSMKEDVFDLS-----EEPE 374 LD +T +++NF+ K D+ +L EE E Sbjct: 1862 ----LDTVT-NVLNFIKLQKIDIIELQKSLSLEEVE 1892 Score = 32.2 bits (73), Expect = 0.42 Identities = 24/113 (21%), Positives = 30/113 (26%), Gaps = 28/113 (24%) Query: 642 SFAQKL--ETKYTLEAKKWFLKG-VKAYISKGLDVDIPEVC--LKAKEEER--------- 687 + A KL E TL K +K + A I D +A E Sbjct: 103 ALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGG 162 Query: 688 QGT------------DTYQAWIDDCCD-IGENLWEESHSLAKSYSEYREQELN 727 QG TY + D E L E + Q LN Sbjct: 163 QGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELI-RTTLDAEKVFTQGLN 214 >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding, early protein; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* Length = 305 Score = 47.9 bits (114), Expect = 8e-06 Identities = 24/169 (14%), Positives = 51/169 (30%), Gaps = 25/169 (14%) Query: 493 ALLGGNKAQRFIHIRGVGGSGKSTL-MNLIKYAFGNQYVINAEASDIMQNRPPEAGKANP 551 L G + + G +GKS L +LI + G+ V++ K++ Sbjct: 118 LWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFLGGS--VLSFANH-----------KSHF 164 Query: 552 SLIRLMGSRIVIISETNENDEINA-AKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVP 610 L L +R ++ + ++ G ++ + P +V Sbjct: 165 WLASLADTRAALVDDATHACWRYFDTYLRNALDGYPVSIDRKHKAAVQIK---APPLLVT 221 Query: 611 -NKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKW 658 N + + R F++P + E + + W Sbjct: 222 SNIDVQAEDRYLYLHSRVQTFRFEQPCTDESG------EQPFNITDADW 264 >3m1m_A ORF904; primase, polymerase, plasmid, replication; 1.85A {Sulfolobus islandicus} Length = 335 Score = 40.2 bits (93), Expect = 0.002 Identities = 36/219 (16%), Positives = 72/219 (32%), Gaps = 42/219 (19%) Query: 8 EQAKQAIHNGFKLIPLRLGDKRP--QRLGKWEEQLLSSEKIDKL-----PACGFGFVCGV 60 AK + +GF +IP+ K+P + K+ ++ S E+ + + Sbjct: 10 RYAKWFLEHGFNIIPIDPESKKPVLKEWQKYSHEMPSDEEKQRFLKMIEEGYNYAIPG-- 67 Query: 61 GEQPLYAFDIDSKDE-KTANTFKDTFEILHGTPIV-----------RIGQKPKILIPFRM 108 G++ L D +SK++ K E+ T P I Sbjct: 68 GQKGLVILDFESKEKLKAWIGESALEELCRKTLCTNTVHGGIHIYVLSNDIPPHKINPLF 127 Query: 109 NKEGIKKKKTTESTQGHLDILGCGQYFVA-----YNIHPKTKK------EYTWTTPPHRF 157 + G +G +D+ Y + ++H T K YT + Sbjct: 128 EENG----------KGIIDLQSYNSYVLGLGSCVNHLHCTTDKCPWKEQNYTTCYTLYNE 177 Query: 158 KVEDTPLLSEEDVEYLFKFFQEITVPLVKDKKSIIPSKT 196 E + + + + +L + + + + L K K + K Sbjct: 178 LKEISKVDLKSLLRFLAEKGKRLGITLSKTAKEWLEGKK 216 >1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20 Length = 212 Score = 39.0 bits (91), Expect = 0.004 Identities = 25/168 (14%), Positives = 47/168 (27%), Gaps = 24/168 (14%) Query: 494 LLGGNKAQRFIHIRGVGGSGKSTL-MNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS 552 L G + + G +GKS M+ I + G S + Sbjct: 51 FLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNSTS-------------HFW 97 Query: 553 LIRLMGSRIVIISE-TNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIV-P 610 L L +++ ++ + T ++ G+ ++ + P ++ Sbjct: 98 LEPLTDTKVAMLDDATTTCWTYFDTYMRNALDGNPISIDRKHKPLIQLK---CPPILLTT 154 Query: 611 NKHLFVRNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKW 658 N H N R V F F + Y + K W Sbjct: 155 NIHPAKDNRWPYLESRITVFEFPNAF-----PFDKNGNPVYEINDKNW 197 >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleotide binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* Length = 178 Score = 35.0 bits (79), Expect = 0.064 Identities = 17/129 (13%), Positives = 39/129 (30%), Gaps = 3/129 (2%) Query: 500 AQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGS 559 R I + G +GKS ++ ++ ++ +++ P + A + Sbjct: 2 TTRMIILNGGSSAGKSGIVRCLQSVLPEPWL-AFGVDSLIEAMPLKMQSAEGGIEFDADG 60 Query: 560 RIVIISETNENDEINAAKIKQM--TGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVR 617 + I E + A + M G + + G ++ + + VR Sbjct: 61 GVSIGPEFRALEGAWAEGVVAMARAGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVR 120 Query: 618 NPDDAWWRR 626 R Sbjct: 121 CDGAVAEGR 129 >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* Length = 207 Score = 33.9 bits (76), Expect = 0.15 Identities = 23/166 (13%), Positives = 43/166 (25%), Gaps = 1/166 (0%) Query: 493 ALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPS 552 L+ I I GV SGK+TL ++ N VI+ + ++ Sbjct: 13 GLVPRGSKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFKPESEIETDKNGFLQ 72 Query: 553 LIRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK 612 L + + +A T + + N+ Sbjct: 73 YDVLEALNMEKMMSAISCWMESARHSVVSTDQESAEEIPILIIEGFLLFNYKPLDTIWNR 132 Query: 613 HLFVR-NPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKK 657 F+ ++ RR + + KY E + Sbjct: 133 SYFLTIPYEECKRRRSTRVYQPPDSPGYFDGHVWPMYLKYRQEMQD 178 >2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi} Length = 350 Score = 33.4 bits (74), Expect = 0.21 Identities = 18/180 (10%), Positives = 41/180 (22%) Query: 499 KAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMG 558 + + G+ GKS+L+ + E + E Sbjct: 29 ENYPLTLLLGIRRVGKSSLLRAFLNERPGILIDCRELYAERGHITREELIKELQSTISPF 88 Query: 559 SRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRN 618 + + + N + + ++++ + + G E +F + Sbjct: 89 QKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGG 148 Query: 619 PDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEV 678 + Y S L + + L G A D Sbjct: 149 KELLALFAYAYDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTS 208 >2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 Length = 241 Score = 32.7 bits (73), Expect = 0.35 Identities = 11/54 (20%), Positives = 19/54 (35%) Query: 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIR 555 R + I G GKST + L+ + +V + + KA + Sbjct: 3 RRLSIEGNIAVGKSTFVKLLTKTYPEWHVATEPVATWQNIQAAGNQKACTAQSL 56 >3iyt_A APAF-1, apoptotic protease-activating factor 1; apoptosome, procaspase-9 CARD, apoptosis; HET: ATP; 9.50A {Homo sapiens} Length = 1263 Score = 32.5 bits (73), Expect = 0.39 Identities = 8/29 (27%), Positives = 11/29 (37%) Query: 493 ALLGGNKAQRFIHIRGVGGSGKSTLMNLI 521 L ++ I G+ G GKS L Sbjct: 145 KLSKLKGEPGWVTIHGMAGCGKSVLAAEA 173 >2rhm_A Putative kinase; ZP_00765535.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Chloroflexus aurantiacus j-10-fl} Length = 193 Score = 32.0 bits (71), Expect = 0.52 Identities = 17/125 (13%), Positives = 38/125 (30%), Gaps = 6/125 (4%) Query: 497 GNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRL 556 G + I + G +GK+TL + + + G ++ R Sbjct: 1 GMQTPALIIVTGHPATGKTTLSQALATGLRLPLL---SKDAFKEVMFDGLGWSDREWSRR 57 Query: 557 MGSRIVIISETNENDEINAAKIKQMTGG---DCMTARLNYGNTYSESPASFTPFIVPNKH 613 +G+ +++ + + + M D T R+ +T + + Sbjct: 58 VGATAIMMLYHTAATILQSGQSLIMESNFRVDLDTERMQNLHTIAPFTPIQIRCVASGDV 117 Query: 614 LFVRN 618 L R Sbjct: 118 LVERI 122 >3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography, ATP-binding; 2.15A {Ehrlichia chaffeensis} Length = 223 Score = 31.7 bits (71), Expect = 0.61 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 4/54 (7%) Query: 503 FIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRL 556 FI G+ GSGK+T +L+ Y + ++++ R P N S+ L Sbjct: 23 FITFEGIDGSGKTTQSHLLAEYLSEIYGV----NNVVLTREPGGTLLNESVRNL 72 >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} Length = 322 Score = 31.4 bits (70), Expect = 0.70 Identities = 29/188 (15%), Positives = 54/188 (28%), Gaps = 2/188 (1%) Query: 496 GGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIR 555 G R I + G G+GKS L + N + +SD++ E+ K +L + Sbjct: 40 GKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQ 99 Query: 556 LMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLF 615 L I +E D + ++ + + +V Sbjct: 100 LARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQ-GVGVDNDGILVLGATNI 158 Query: 616 VRNPDDAWWRRYIVI-PFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVD 674 D A RR+ P + A+ + + + + D Sbjct: 159 PWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGAD 218 Query: 675 IPEVCLKA 682 I + A Sbjct: 219 ISIIVRDA 226 >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, structural genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} Length = 208 Score = 31.6 bits (70), Expect = 0.74 Identities = 27/176 (15%), Positives = 47/176 (26%), Gaps = 3/176 (1%) Query: 494 LLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSL 553 L ++ + + G GSGKSTL N + A Q + + + L Sbjct: 15 LDPRQPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNRLLEPRGLL 74 Query: 554 IRLMGSRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKH 613 R + + + + P I N Sbjct: 75 PRKGAPETFDFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYL 134 Query: 614 LFVRNPDDAWWRRYIVIPF-DKPIANRDASFAQK-LETKYTLE-AKKWFLKGVKAY 666 LF + V + P+A+ +A Q+ L+ + A A Sbjct: 135 LFDAPGWRDLTAIWDVSIRLEVPMADLEARLVQRWLDHGLNHDAAVARAQGNDLAN 190 >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Score = 31.4 bits (70), Expect = 0.78 Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 12/73 (16%) Query: 676 PEVCLKAKEEERQGTDTYQAWIDDCCDIGENLWEESHSLAKSYSEYRE-QELNYDRKRIS 734 PE K +EE+R+ +D + E W E K E+ + Q ++ +I+ Sbjct: 84 PESIRKWREEQRKRLQE----LDAASKVMEQEWREKAK--KDLEEWNQRQSEQVEKNKIN 137 Query: 735 TRTVTLNLKQKGF 747 R + K F Sbjct: 138 NR-----IADKAF 145 Score = 28.0 bits (61), Expect = 7.6 Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 21/60 (35%) Query: 704 GENLWEESHSLAKSYSEYREQELNYDRKRISTRTVTLNLKQKGFIGGIKREKIEKEWKSK 763 + L +E S+ K +RE++ RKR+ L+ K +E+EW+ K Sbjct: 77 ADRLTQEPESIRK----WREEQ----RKRLQE----LDAASK---------VMEQEWREK 115 >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* Length = 842 Score = 30.9 bits (69), Expect = 1.0 Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 1/30 (3%) Query: 502 RFIHIRGVGGSGKSTLMNLIKYAFGN-QYV 530 + GV GSGKS+L YA +Y+ Sbjct: 37 ALVVFTGVSGSGKSSLAFGTLYAEAQRRYL 66 >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 Score = 31.0 bits (70), Expect = 1.2 Identities = 8/23 (34%), Positives = 12/23 (52%) Query: 499 KAQRFIHIRGVGGSGKSTLMNLI 521 + + G GSGKST+ L+ Sbjct: 43 YPGKVTALVGPNGSGKSTVAALL 65 >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 Score = 30.9 bits (70), Expect = 1.2 Identities = 8/15 (53%), Positives = 11/15 (73%), Gaps = 2/15 (13%) Query: 509 VG--GSGKSTLMNLI 521 +G GSGKSTL++ Sbjct: 53 LGRTGSGKSTLLSAF 67 >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein structure initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 Length = 191 Score = 30.8 bits (68), Expect = 1.3 Identities = 9/36 (25%), Positives = 15/36 (41%) Query: 495 LGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530 + + + + G GSGKST+ + G V Sbjct: 3 MTDDLGGNILLLSGHPGSGKSTIAEALANLPGVPKV 38 >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 Score = 30.6 bits (69), Expect = 1.3 Identities = 15/65 (23%), Positives = 35/65 (53%), Gaps = 3/65 (4%) Query: 503 FIHIRGVGGSGKSTLMNLI---KYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGS 559 I I G GSGKST + I + ++N + ++++++ + A+ + +RL+ + Sbjct: 34 VISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRT 93 Query: 560 RIVII 564 R+ ++ Sbjct: 94 RLTMV 98 >1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 2zi3_A* ... Length = 263 Score = 30.7 bits (68), Expect = 1.4 Identities = 10/30 (33%), Positives = 17/30 (56%) Query: 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQYVI 531 + I I G +GKST +N++K + V+ Sbjct: 25 KKISIEGNIAAGKSTFVNILKQLCEDWEVV 54 >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 Length = 322 Score = 30.5 bits (67), Expect = 1.4 Identities = 13/27 (48%), Positives = 17/27 (62%) Query: 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 R I G GSGKS +++ IK+ FG Q Sbjct: 25 RVTAIVGPNGSGKSNIIDAIKWVFGEQ 51 >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* Length = 252 Score = 30.4 bits (67), Expect = 1.5 Identities = 15/123 (12%), Positives = 36/123 (29%), Gaps = 1/123 (0%) Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVI 563 I + G SGKS++ I G Q ++ ++ + S + + Sbjct: 25 IGVSGGTASGKSSVCAKIVQLLG-QNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKGQF 83 Query: 564 ISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAW 623 + + + + T ++ + S S T + P + + Sbjct: 84 NFDHPDAFDNELILKTLKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFY 143 Query: 624 WRR 626 + Sbjct: 144 SQE 146 >3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A* Length = 216 Score = 30.7 bits (68), Expect = 1.5 Identities = 20/172 (11%), Positives = 46/172 (26%), Gaps = 16/172 (9%) Query: 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRI 561 + I I G+ +GK+T N++ + PE LI + Sbjct: 6 KLILIEGLDRTGKTTQCNILYKKLQPNCKLLKF---------PERSTRIGGLINEYLTDD 56 Query: 562 VIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNK-----HLFV 616 + +A ++ S + + Sbjct: 57 SFQLSDQAIHLLFSANRWEIVDKIKKDLLEGKNIVMDRYVYSGVAYSAAKGTNGMDLDWC 116 Query: 617 RNPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYIS 668 PD + + + + +A + + +Y E K+ K + ++ Sbjct: 117 LQPDVGLLKPDLTLFLSTQDVDNNAEKSGFGDERY--ETVKFQEKVKQTFMK 166 >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 Score = 30.4 bits (68), Expect = 1.5 Identities = 21/92 (22%), Positives = 33/92 (35%), Gaps = 8/92 (8%) Query: 508 GVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLI-------RLMGSR 560 G G GKSTLM I + + E + + ++ S++ Sbjct: 468 GPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDIDGTHSDTSVLDFVFESGVGTKEA 527 Query: 561 IV-IISETNENDEINAAKIKQMTGGDCMTARL 591 I + E DE+ A I ++GG M L Sbjct: 528 IKDKLIEFGFTDEMIAMPISALSGGWKMKLAL 559 >1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1 Length = 376 Score = 30.4 bits (68), Expect = 1.5 Identities = 7/30 (23%), Positives = 13/30 (43%) Query: 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQYVI 531 ++I G G GK+T L+ ++ Sbjct: 50 LRVYIDGPHGMGKTTTTQLLVALGSRDDIV 79 >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 Score = 30.4 bits (68), Expect = 1.6 Identities = 7/19 (36%), Positives = 14/19 (73%) Query: 503 FIHIRGVGGSGKSTLMNLI 521 + G+ G+GK+TL+N++ Sbjct: 49 KWILYGLNGAGKTTLLNIL 67 >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A Length = 192 Score = 30.2 bits (67), Expect = 1.6 Identities = 20/176 (11%), Positives = 45/176 (25%), Gaps = 11/176 (6%) Query: 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQ---YVINAEASDIMQNRPPEAGKANPSLIRLMG 558 + + + GV G G +T L + Y + + S + + E ++ +R M Sbjct: 4 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQMRKMD 63 Query: 559 SRIVIISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVR- 617 + +I + D + P+ + P+ + V Sbjct: 64 PETQKRIQKMAGRKIAEMAKESPVAVDTHSTVSTPKGYLPGLPSWVLNELNPDLIIVVET 123 Query: 618 NPDDAWWRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDV 673 D+ RR R + + + + Sbjct: 124 TGDEILMRR-------MSDETRVRDLDTASTIEQHQFMNRCAAMSYGVLTGATVKI 172 >2yz2_A Putative ABC transporter ATP-binding protein TM_0222; cobalt transport, hydrolase, inner membrane, membrane, nucleotide- binding; 2.30A {Thermotoga maritima MSB8} Length = 266 Score = 30.2 bits (68), Expect = 1.6 Identities = 8/19 (42%), Positives = 13/19 (68%) Query: 503 FIHIRGVGGSGKSTLMNLI 521 + + G GSGKSTL+ ++ Sbjct: 35 CLLVAGNTGSGKSTLLQIV 53 >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A Length = 301 Score = 30.4 bits (68), Expect = 1.6 Identities = 11/33 (33%), Positives = 13/33 (39%) Query: 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533 ++ I G GSGKST Y IN Sbjct: 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINR 34 >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB: 2axp_A* Length = 173 Score = 30.3 bits (67), Expect = 1.6 Identities = 5/41 (12%), Positives = 10/41 (24%) Query: 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542 I + G KST+ + + + Sbjct: 2 TLIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELAKSGN 42 >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 Length = 181 Score = 30.2 bits (67), Expect = 1.9 Identities = 11/33 (33%), Positives = 13/33 (39%) Query: 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINA 533 ++ I G GSGKST Y IN Sbjct: 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNINR 34 >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 Score = 30.0 bits (68), Expect = 1.9 Identities = 8/15 (53%), Positives = 12/15 (80%), Gaps = 2/15 (13%) Query: 509 VG--GSGKSTLMNLI 521 VG G+GKST++ L+ Sbjct: 86 VGPSGAGKSTILRLL 100 >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 Score = 30.2 bits (68), Expect = 1.9 Identities = 8/23 (34%), Positives = 12/23 (52%) Query: 499 KAQRFIHIRGVGGSGKSTLMNLI 521 + I G G GKST+ +L+ Sbjct: 26 QPNSIIAFAGPSGGGKSTIFSLL 48 >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 Score = 30.2 bits (68), Expect = 2.0 Identities = 13/23 (56%), Positives = 13/23 (56%) Query: 499 KAQRFIHIRGVGGSGKSTLMNLI 521 K I I G GSGKSTL LI Sbjct: 33 KQGEVIGIVGRSGSGKSTLTKLI 55 >1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A* Length = 334 Score = 30.0 bits (67), Expect = 2.0 Identities = 9/29 (31%), Positives = 13/29 (44%) Query: 503 FIHIRGVGGSGKSTLMNLIKYAFGNQYVI 531 I++ GV G GKST ++ A Sbjct: 9 RIYLDGVYGIGKSTTGRVMASAASGGSPT 37 >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 Score = 29.9 bits (67), Expect = 2.0 Identities = 6/23 (26%), Positives = 12/23 (52%) Query: 499 KAQRFIHIRGVGGSGKSTLMNLI 521 + + G G GKS+L++ + Sbjct: 29 PEGALVAVVGQVGCGKSSLLSAL 51 >1l2t_A Hypothetical ABC transporter ATP-binding protein MJ0796; ABC transporters, ATPase, walker-A, NBD, transport protein; HET: ATP; 1.90A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1f3o_A* Length = 235 Score = 30.2 bits (68), Expect = 2.0 Identities = 11/19 (57%), Positives = 15/19 (78%) Query: 503 FIHIRGVGGSGKSTLMNLI 521 F+ I G GSGKST++N+I Sbjct: 33 FVSIMGPSGSGKSTMLNII 51 >2pze_A Cystic fibrosis transmembrane conductance regulator; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 Score = 30.2 bits (68), Expect = 2.0 Identities = 6/23 (26%), Positives = 15/23 (65%) Query: 499 KAQRFIHIRGVGGSGKSTLMNLI 521 + + + + G G+GK++L+ +I Sbjct: 32 ERGQLLAVAGSTGAGKTSLLMMI 54 >1nn5_A Similar to deoxythymidylate kinase (thymidylate kinase); P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* Length = 215 Score = 30.1 bits (67), Expect = 2.1 Identities = 8/29 (27%), Positives = 11/29 (37%) Query: 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530 I + GV +GKST + A Sbjct: 10 ALIVLEGVDRAGKSTQSRKLVEALCAAGH 38 >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 Score = 29.8 bits (67), Expect = 2.2 Identities = 8/19 (42%), Positives = 13/19 (68%) Query: 503 FIHIRGVGGSGKSTLMNLI 521 + + G GSGK+T++ LI Sbjct: 43 MVGLLGPSGSGKTTILRLI 61 >2awn_A Maltose/maltodextrin import ATP-binding protein MALK; ATP-binding cassette, transport protein; HET: ADP; 2.30A {Escherichia coli K12} SCOP: b.40.6.3 c.37.1.12 PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 2r6g_A* 1q1b_A Length = 381 Score = 29.8 bits (67), Expect = 2.2 Identities = 9/19 (47%), Positives = 12/19 (63%) Query: 503 FIHIRGVGGSGKSTLMNLI 521 F+ G G GKSTL+ +I Sbjct: 31 FVVFVGPSGCGKSTLLRMI 49 >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} Length = 183 Score = 30.0 bits (66), Expect = 2.2 Identities = 17/141 (12%), Positives = 34/141 (24%), Gaps = 6/141 (4%) Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYV----INAEASDIMQNRPPEAGKANPSLIRLMGS 559 I I G G GK+ + + +V +A + + +P I LM Sbjct: 8 IWINGPFGVGKTHTAHTLHERLPGSFVFEPEEMGQALRKLTPGFSGDPQEHPMWIPLMLD 67 Query: 560 RIV-IISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRN 618 + E + + M+ + G + +V + Sbjct: 68 ALQYASREAAGPLIVPVSISDTARHRRLMSGLKDRGLSVHHFTLIAPLNVVLERLRRDGQ 127 Query: 619 PDDAW-WRRYIVIPFDKPIAN 638 P + Sbjct: 128 PQVNVGTVEDRLNELRGEQFQ 148 >2p67_A LAO/AO transport system kinase; ARGK, structural genomics, PSI-2, protein structure initiative; 1.80A {Escherichia coli K12} SCOP: c.37.1.10 Length = 341 Score = 29.9 bits (66), Expect = 2.3 Identities = 8/37 (21%), Positives = 13/37 (35%), Gaps = 1/37 (2%) Query: 504 IHIRGVGGSGKSTLMN-LIKYAFGNQYVINAEASDIM 539 + + G G+GKST + + A D Sbjct: 59 LGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPS 95 >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural genomics, NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii str} Length = 213 Score = 30.0 bits (66), Expect = 2.3 Identities = 9/30 (30%), Positives = 14/30 (46%) Query: 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQYVI 531 I G+ GSGKS+ L+K + + Sbjct: 5 VLIAFEGIDGSGKSSQATLLKDWIELKRDV 34 >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* Length = 173 Score = 29.9 bits (66), Expect = 2.4 Identities = 15/85 (17%), Positives = 26/85 (30%), Gaps = 6/85 (7%) Query: 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRI 561 I + G G G +T+ + A G ++V D +G ++ G Sbjct: 3 EPIFMVGARGCGMTTVGRELARALGYEFV------DTDIFMQHTSGMTVADVVAAEGWPG 56 Query: 562 VIISETNENDEINAAKIKQMTGGDC 586 E+ + TGG Sbjct: 57 FRRRESEALQAVATPNRVVATGGGM 81 >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 Score = 29.8 bits (67), Expect = 2.4 Identities = 8/23 (34%), Positives = 12/23 (52%) Query: 499 KAQRFIHIRGVGGSGKSTLMNLI 521 + + G GSGKST+ L+ Sbjct: 44 PSGTTCALVGHTGSGKSTIAKLL 66 >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* Length = 204 Score = 29.9 bits (66), Expect = 2.4 Identities = 7/29 (24%), Positives = 11/29 (37%) Query: 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530 I G+ SGK+T I + + Sbjct: 5 ALIVFEGLDKSGKTTQCMNIMESIPANTI 33 >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.40A {Bacillus halodurans c-125} SCOP: c.37.1.25 Length = 189 Score = 29.6 bits (65), Expect = 2.5 Identities = 9/35 (25%), Positives = 13/35 (37%) Query: 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYVINAEA 535 ++ I G G GKST + N I + Sbjct: 2 KKLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDI 36 >1sgw_A Putative ABC transporter; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; 1.70A {Pyrococcus furiosus dsm 3638} SCOP: c.37.1.12 Length = 214 Score = 29.5 bits (66), Expect = 2.6 Identities = 7/19 (36%), Positives = 11/19 (57%) Query: 503 FIHIRGVGGSGKSTLMNLI 521 ++ G G GK+TL+ I Sbjct: 37 VVNFHGPNGIGKTTLLKTI 55 >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 3nxs_A* Length = 355 Score = 29.8 bits (66), Expect = 2.7 Identities = 10/37 (27%), Positives = 15/37 (40%) Query: 493 ALLGGNKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQY 529 LL + + I GV G GKST + + + Sbjct: 71 RLLPDSGNAHRVGITGVPGVGKSTAIEALGMHLIERG 107 >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* Length = 230 Score = 29.6 bits (65), Expect = 2.7 Identities = 8/34 (23%), Positives = 15/34 (44%) Query: 498 NKAQRFIHIRGVGGSGKSTLMNLIKYAFGNQYVI 531 + I G GSGK+T +N + + ++ Sbjct: 17 GTQPFTVLIEGNIGSGKTTYLNHFEKYKNDICLL 50 >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 Score = 29.5 bits (66), Expect = 2.7 Identities = 6/23 (26%), Positives = 15/23 (65%) Query: 499 KAQRFIHIRGVGGSGKSTLMNLI 521 + + + + G G+GK++L+ +I Sbjct: 62 ERGQLLAVAGSTGAGKTSLLMMI 84 >1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154 Score = 29.6 bits (65), Expect = 2.7 Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 13/41 (31%) Query: 645 QKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAKEE 685 Q L+ K L+A +K Y D P + +KA E Sbjct: 20 QALK-K--LQAS------LKLYA----DDSAPALAIKATME 47 >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 Score = 29.8 bits (67), Expect = 2.7 Identities = 8/19 (42%), Positives = 11/19 (57%) Query: 503 FIHIRGVGGSGKSTLMNLI 521 I G G+GK+T M +I Sbjct: 33 RFGILGPSGAGKTTFMRII 51 >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 Score = 29.5 bits (66), Expect = 2.7 Identities = 11/19 (57%), Positives = 13/19 (68%) Query: 503 FIHIRGVGGSGKSTLMNLI 521 I G GSGKSTL+N+I Sbjct: 35 VTLIIGPNGSGKSTLINVI 53 >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 Score = 29.6 bits (66), Expect = 2.8 Identities = 8/19 (42%), Positives = 13/19 (68%) Query: 503 FIHIRGVGGSGKSTLMNLI 521 + + G G GKSTL++L+ Sbjct: 33 ILAVLGQNGCGKSTLLDLL 51 >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 Score = 29.4 bits (66), Expect = 2.8 Identities = 7/19 (36%), Positives = 11/19 (57%) Query: 503 FIHIRGVGGSGKSTLMNLI 521 + I G G+GK+ + LI Sbjct: 28 YFVILGPTGAGKTLFLELI 46 >1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} Length = 591 Score = 29.5 bits (65), Expect = 2.9 Identities = 8/26 (30%), Positives = 11/26 (42%) Query: 493 ALLGGNKAQRFIHIRGVGGSGKSTLM 518 L ++ I G+ G GKS L Sbjct: 139 KLSKLKGEPGWVTIHGMAGCGKSVLA 164 >2hyd_A ABC transporter homolog; transport protein; HET: ADP; 3.00A {Staphylococcus aureus} SCOP: c.37.1.12 f.37.1.1 PDB: 2onj_A* Length = 578 Score = 29.7 bits (66), Expect = 2.9 Identities = 10/23 (43%), Positives = 14/23 (60%) Query: 499 KAQRFIHIRGVGGSGKSTLMNLI 521 + + G+ G GKSTL+NLI Sbjct: 365 EKGETVAFVGMSGGGKSTLINLI 387 >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 Score = 29.5 bits (66), Expect = 2.9 Identities = 10/19 (52%), Positives = 13/19 (68%) Query: 503 FIHIRGVGGSGKSTLMNLI 521 F+ + G GSGKSTL+ I Sbjct: 31 FMALLGPSGSGKSTLLYTI 49 >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* Length = 214 Score = 29.5 bits (65), Expect = 3.0 Identities = 11/26 (42%), Positives = 14/26 (53%) Query: 503 FIHIRGVGGSGKSTLMNLIKYAFGNQ 528 I I GV G+GK TL+ + AF Sbjct: 2 LIAIEGVDGAGKRTLVEKLSGAFRAA 27 >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 Length = 178 Score = 29.5 bits (65), Expect = 3.0 Identities = 9/18 (50%), Positives = 11/18 (61%) Query: 504 IHIRGVGGSGKSTLMNLI 521 I I G G GK+TL+ I Sbjct: 3 IIITGEPGVGKTTLVKKI 20 >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 Score = 29.6 bits (66), Expect = 3.0 Identities = 7/19 (36%), Positives = 11/19 (57%) Query: 503 FIHIRGVGGSGKSTLMNLI 521 + + G G+GKS + LI Sbjct: 26 YCVLLGPTGAGKSVFLELI 44 >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 Score = 29.6 bits (66), Expect = 3.1 Identities = 8/23 (34%), Positives = 14/23 (60%) Query: 499 KAQRFIHIRGVGGSGKSTLMNLI 521 K + + + G G GKST++ L+ Sbjct: 1057 KKGQTLALVGSSGCGKSTVVQLL 1079 >2fna_A Conserved hypothetical protein; 13814777, structural genomics, joint center for structural genomics, JCSG; HET: MSE ADP; 2.00A {Sulfolobus solfataricus P2} SCOP: a.4.5.11 c.37.1.20 Length = 357 Score = 29.5 bits (64), Expect = 3.2 Identities = 5/47 (10%), Positives = 17/47 (36%), Gaps = 1/47 (2%) Query: 501 QRFIHIRGVGGSGKSTLMNLIKYAFGNQYV-INAEASDIMQNRPPEA 546 + G+ +GKS+++ + Y+ ++ + + Sbjct: 30 APITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKD 76 >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* Length = 205 Score = 29.4 bits (64), Expect = 3.2 Identities = 10/28 (35%), Positives = 13/28 (46%) Query: 503 FIHIRGVGGSGKSTLMNLIKYAFGNQYV 530 I I G G+GKST+ I G + Sbjct: 2 KIAIFGTVGAGKSTISAEISKKLGYEIF 29 >2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 Length = 549 Score = 29.5 bits (65), Expect = 3.2 Identities = 13/111 (11%), Positives = 33/111 (29%), Gaps = 3/111 (2%) Query: 411 AGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEGEPSQEFL 470 A + + ++ L + + + + I ++ + + Sbjct: 65 ASELGPLIDFFNYNNQSHLADFLEDYIDFAINEPDLLRPVVIAPQFSRQMLDRKLLLGNV 124 Query: 471 DLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLI 521 + E +D R + + F+ + G GSGKS + + Sbjct: 125 PKQMTCYIREYHVD---RVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQA 172 >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 Score = 29.5 bits (66), Expect = 3.2 Identities = 7/19 (36%), Positives = 11/19 (57%) Query: 503 FIHIRGVGGSGKSTLMNLI 521 + I G G GK+TL+ + Sbjct: 32 ILFIIGASGCGKTTLLRCL 50 >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 Score = 29.3 bits (65), Expect = 3.2 Identities = 10/23 (43%), Positives = 15/23 (65%) Query: 499 KAQRFIHIRGVGGSGKSTLMNLI 521 A + + + G GSGKST+ +LI Sbjct: 367 PAGKTVALVGRSGSGKSTIASLI 389 >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 Length = 201 Score = 29.3 bits (64), Expect = 3.3 Identities = 16/137 (11%), Positives = 28/137 (20%), Gaps = 1/137 (0%) Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVI 563 + I G+ SGK+TL N + Q + + + Sbjct: 25 LGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWFEYYYLQW 84 Query: 564 ISETNENDEINAAKIKQMTGGDCMTARLNY-GNTYSESPASFTPFIVPNKHLFVRNPDDA 622 E + K + S I Sbjct: 85 DVEWLTHQLFRQLKASHQLTLPFYDHETDTHSKRTVYLSDSDMIMIEGVFLQRKEWRPFF 144 Query: 623 WWRRYIVIPFDKPIANR 639 + Y+ P + A Sbjct: 145 DFVVYLDCPREIRFARE 161 >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 Score = 29.3 bits (65), Expect = 3.4 Identities = 9/23 (39%), Positives = 13/23 (56%) Query: 499 KAQRFIHIRGVGGSGKSTLMNLI 521 + + + G GSGKST+ NL Sbjct: 367 PQGKTVALVGRSGSGKSTIANLF 389 >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* Length = 249 Score = 29.1 bits (65), Expect = 3.6 Identities = 8/19 (42%), Positives = 13/19 (68%) Query: 503 FIHIRGVGGSGKSTLMNLI 521 +H+ G G+GKSTL+ + Sbjct: 28 ILHLVGPNGAGKSTLLARM 46 >3lv8_A DTMP kinase, thymidylate kinase; structural genomics, infectious diseases, center for structural genomics of infectious diseases; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A* Length = 236 Score = 29.2 bits (65), Expect = 3.8 Identities = 9/21 (42%), Positives = 15/21 (71%) Query: 502 RFIHIRGVGGSGKSTLMNLIK 522 +FI I G+ G+GKST + ++ Sbjct: 28 KFIVIEGLEGAGKSTAIQVVV 48 >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) class, TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima MSB8} Length = 359 Score = 29.1 bits (65), Expect = 3.8 Identities = 7/23 (30%), Positives = 13/23 (56%) Query: 499 KAQRFIHIRGVGGSGKSTLMNLI 521 K F+ + G G GK+T + ++ Sbjct: 27 KDGEFVALLGPSGCGKTTTLLML 49 >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 Length = 194 Score = 29.2 bits (64), Expect = 3.9 Identities = 9/29 (31%), Positives = 16/29 (55%) Query: 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQYV 530 + + G+ G GKST++ +K NQ + Sbjct: 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGI 30 >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 Score = 28.9 bits (64), Expect = 4.1 Identities = 7/19 (36%), Positives = 12/19 (63%) Query: 503 FIHIRGVGGSGKSTLMNLI 521 + I G G+GKST + ++ Sbjct: 49 VVGIVGPNGTGKSTAVKIL 67 >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 Score = 29.1 bits (65), Expect = 4.1 Identities = 7/19 (36%), Positives = 12/19 (63%) Query: 503 FIHIRGVGGSGKSTLMNLI 521 F+ + G G GK+T + +I Sbjct: 39 FLVLLGPSGCGKTTTLRMI 57 >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* Length = 226 Score = 28.9 bits (63), Expect = 4.1 Identities = 27/196 (13%), Positives = 56/196 (28%), Gaps = 16/196 (8%) Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVI 563 G GSGK+ L+ + ++Y I A D++ E + + + + + + Sbjct: 41 FDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGDVIAKFDAERMEKHGAKVVPLNTGKEC 100 Query: 564 ISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAW 623 + + A + + D + T + + Sbjct: 101 HLDAHLVGH--ALEDLNLDEIDLLFIENVGNLICPADFDLGTHKRIVVISTTEGDDTIEK 158 Query: 624 WRRYIVIPFDKPIANRDASFAQKLETKYTLEAKKWFLKGVKAYISKGLDVDIPEVCLKAK 683 + I D +A +K ++ K ++ D V L K Sbjct: 159 HPGIMKTADLIVINKIDL-----------ADAVGADIKKMENDA-KRINPDAEVVLLSLK 206 Query: 684 EEERQGTDTYQAWIDD 699 E G D +I+ Sbjct: 207 TME--GFDKVLEFIEK 220 >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* Length = 212 Score = 28.8 bits (64), Expect = 4.2 Identities = 10/27 (37%), Positives = 13/27 (48%) Query: 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQ 528 +FI G+ SGKST L+ N Sbjct: 11 KFIVFEGLDRSGKSTQSKLLVEYLKNN 37 >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} Length = 171 Score = 29.0 bits (63), Expect = 4.3 Identities = 7/18 (38%), Positives = 11/18 (61%) Query: 504 IHIRGVGGSGKSTLMNLI 521 + I G SGK+TL+ + Sbjct: 5 LSIVGTSDSGKTTLITRM 22 >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} Length = 607 Score = 28.8 bits (64), Expect = 4.4 Identities = 6/19 (31%), Positives = 12/19 (63%) Query: 503 FIHIRGVGGSGKSTLMNLI 521 + I G G+GK+T + ++ Sbjct: 119 VVGIVGPNGTGKTTAVKIL 137 >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 Score = 29.0 bits (65), Expect = 4.6 Identities = 9/19 (47%), Positives = 12/19 (63%) Query: 503 FIHIRGVGGSGKSTLMNLI 521 + I G GSGK+TL+ I Sbjct: 32 KVIILGPNGSGKTTLLRAI 50 >2ccj_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, ATP-binding; HET: TMP; 1.7A {Staphylococcus aureus} PDB: 2cck_A 2ccg_A* Length = 205 Score = 28.8 bits (63), Expect = 4.7 Identities = 10/28 (35%), Positives = 15/28 (53%) Query: 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQY 529 FI G GSGK+T++N + + Y Sbjct: 3 AFITFEGPEGSGKTTVINEVYHRLVKDY 30 >4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A* Length = 213 Score = 28.7 bits (63), Expect = 4.7 Identities = 8/21 (38%), Positives = 15/21 (71%) Query: 502 RFIHIRGVGGSGKSTLMNLIK 522 ++I I G+ G+GK+T N++ Sbjct: 4 KYIVIEGLEGAGKTTARNVVV 24 >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 Score = 28.6 bits (64), Expect = 4.9 Identities = 6/19 (31%), Positives = 12/19 (63%) Query: 503 FIHIRGVGGSGKSTLMNLI 521 + + G G+GK+T ++ I Sbjct: 34 IVTLIGANGAGKTTTLSAI 52 >2wsm_A Hydrogenase expression/formation protein (HYPB); hydrogenase maturation factor, metal binding protein; 2.30A {Archaeoglobus fulgidus} Length = 221 Score = 28.8 bits (63), Expect = 4.9 Identities = 12/39 (30%), Positives = 19/39 (48%) Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNR 542 ++I G GSGK+ L+ GN+ I A D++ Sbjct: 33 VNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKA 71 >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, ATP-binding cassette, cytoplasm; HET: ADP; 3.20A {Geobacillus stearothermophilus 10} Length = 972 Score = 28.6 bits (63), Expect = 4.9 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 1/30 (3%) Query: 502 RFIHIRGVGGSGKSTLMNLIKYAFGN-QYV 530 + + + G+ GSGKS+L YA G +YV Sbjct: 45 KLVVLTGLSGSGKSSLAFDTIYAEGQRRYV 74 >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 Score = 28.6 bits (64), Expect = 5.1 Identities = 8/19 (42%), Positives = 8/19 (42%) Query: 503 FIHIRGVGGSGKSTLMNLI 521 I G G GKSTL Sbjct: 36 VTAILGGNGVGKSTLFQNF 54 >3dhw_C Methionine import ATP-binding protein METN; ABC-transporter, methionine uptake transporter, membrane protein, amino-acid transport; 3.70A {Escherichia coli K12} SCOP: c.37.1.12 d.58.18.13 Length = 343 Score = 28.6 bits (64), Expect = 5.8 Identities = 7/19 (36%), Positives = 11/19 (57%) Query: 503 FIHIRGVGGSGKSTLMNLI 521 + G G+GKSTL+ + Sbjct: 33 IYGVIGASGAGKSTLIRCV 51 >1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* 1e2l_A* ... Length = 331 Score = 28.4 bits (63), Expect = 6.0 Identities = 7/30 (23%), Positives = 13/30 (43%) Query: 502 RFIHIRGVGGSGKSTLMNLIKYAFGNQYVI 531 ++I G G GK+T L+ ++ Sbjct: 5 LRVYIDGPHGMGKTTTTQLLVALGSRDDIV 34 >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* Length = 203 Score = 28.4 bits (62), Expect = 6.1 Identities = 20/148 (13%), Positives = 46/148 (31%), Gaps = 3/148 (2%) Query: 504 IHIRGVGGSGKSTLMNLIKYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVI 563 I + G G+GK T + + ++ A D+++ AG LI+ I Sbjct: 18 IFVLGGPGAGKGTQCEKLVKDYSFVHL---SAGDLLRAEQGRAGSQYGELIKNCIKEGQI 74 Query: 564 ISETNENDEINAAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAW 623 + + + A + + ++ + + LF P+D Sbjct: 75 VPQEITLALLRNAISDNVKANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDCPEDIM 134 Query: 624 WRRYIVIPFDKPIANRDASFAQKLETKY 651 R + ++ + +K + Sbjct: 135 LERLLERGKTSGRSDDNIESIKKRFNTF 162 >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 Score = 28.2 bits (63), Expect = 6.3 Identities = 7/19 (36%), Positives = 11/19 (57%) Query: 503 FIHIRGVGGSGKSTLMNLI 521 + + G GSGKST + + Sbjct: 52 VVVVIGPSGSGKSTFLRCL 70 >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural genomics, joint center for structural genomics, JCSG; 2.10A {Thermotoga maritima MSB8} SCOP: c.37.1.12 Length = 256 Score = 28.4 bits (63), Expect = 6.7 Identities = 6/19 (31%), Positives = 11/19 (57%) Query: 503 FIHIRGVGGSGKSTLMNLI 521 + G G+GK+T + +I Sbjct: 43 IFGLIGPNGAGKTTTLRII 61 >1jrm_A MTH0637, conserved hypothetical protein MTH637; alpha-beta protein, structural genomics, OCSP, NESG; NMR {Methanothermobacterthermautotrophicus} SCOP: d.206.1.1 Length = 104 Score = 28.1 bits (63), Expect = 6.8 Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 4/27 (14%) Query: 543 PPEAGKANPSLIRLM----GSRIVIIS 565 PP+ GKAN +I+ G + I+S Sbjct: 46 PPQKGKANREIIKEFSETFGRDVEIVS 72 >1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1 Length = 341 Score = 28.5 bits (63), Expect = 6.9 Identities = 7/26 (26%), Positives = 11/26 (42%) Query: 503 FIHIRGVGGSGKSTLMNLIKYAFGNQ 528 I++ G G GK+T + F Sbjct: 14 RIYLDGAYGIGKTTAAEEFLHHFAIT 39 >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular switch, RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus P2} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* Length = 324 Score = 28.3 bits (62), Expect = 7.2 Identities = 38/234 (16%), Positives = 65/234 (27%), Gaps = 25/234 (10%) Query: 404 STAQSLEAGSIFSITSDLLDSSSRFLGEQDGILDLETGQKVKPTKELYITKSTGTPFVEG 463 + L S+ L +S + L GI L T QK+ + T Sbjct: 23 TVINKLIEAGYSSL-ETLAVASPQDLSVAAGI-PLSTAQKIIKEARDALDIRFKTALEVK 80 Query: 464 EPSQEFLDLVSGYFESEEVMDYFTRCVGMALLGGNKAQRFIHIRGVGGSGKSTLMNLI-- 521 + + +G + + L GG + + G GSGK+ L + + Sbjct: 81 KERMNVKKISTGSQALDGL-----------LAGGIETRTMTEFFGEFGSGKTQLCHQLSV 129 Query: 522 -------KYAFGNQYVINAEASDIMQNRPPEAGKANPSLIRLMGSRIVIISETNENDEIN 574 K + V R KA I + + I I N + +I Sbjct: 130 NVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINTDHQIA 189 Query: 575 AAKIKQMTGGDCMTARLNYGNTYSESPASFTPFIVPNKHLFVRNPDDAWWRRYI 628 Q + +L + F ++L VR + Sbjct: 190 IVDDLQELVSKDPSIKL---IVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQL 240 >1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2 Length = 314 Score = 27.8 bits (62), Expect = 9.9 Identities = 26/131 (19%), Positives = 47/131 (35%), Gaps = 23/131 (17%) Query: 445 KPTKELY-ITKSTGTP-FVEGEPSQEFLDLVSGYFESE----EVMDYFTRCVGMALLGGN 498 +P +EL K TP + + + ++ + E E + V + + G Sbjct: 91 EPPEELIEAAKEHETPLITSKIATTQLMSRLTTFLEHELARTTSLHG----VLVDVYG-- 144 Query: 499 KAQRFIHIRGVGGSGKSTLM-NLIKYAFG----NQYVINAEASDIMQNRPPEAGKANPSL 553 + I G G GKS LIK + I + D + R P+ + L Sbjct: 145 ---VGVLITGDSGIGKSETALELIKRGHRLVADDNVEIREISKDELIGRAPKLIE---HL 198 Query: 554 IRLMGSRIVII 564 + + G I+ + Sbjct: 199 LEIRGLGIINV 209 Database: pdb70 Posted date: Jan 26, 2011 11:21 AM Number of letters in database: 5,693,230 Number of sequences in database: 24,244 Lambda K H 0.316 0.134 0.401 Gapped Lambda K H 0.267 0.0449 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 24244 Number of Hits to DB: 7,033,012 Number of extensions: 339922 Number of successful extensions: 1350 Number of sequences better than 10.0: 1 Number of HSP's gapped: 1342 Number of HSP's successfully gapped: 131 Length of query: 789 Length of database: 5,693,230 Length adjustment: 100 Effective length of query: 689 Effective length of database: 3,268,830 Effective search space: 2252223870 Effective search space used: 2252223870 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 61 (28.0 bits)