Query gi|254781226|ref|YP_003065639.1| hypothetical protein CLIBASIA_05665 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 129 No_of_seqs 67 out of 69 Neff 3.8 Searched_HMMs 33803 Date Wed Jun 1 23:21:38 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781226.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >1u0i_A IAAL-E3; coiled-coil, 48.9 14 0.00043 16.1 2.8 18 101-118 4-21 (26) 2 >1t6f_A Geminin; coiled-coil, 37.0 25 0.00073 14.8 2.6 19 101-119 11-29 (37) 3 >1zhc_A Hypothetical protein H 15.5 65 0.0019 12.4 1.2 24 100-123 20-43 (76) 4 >1ihq_A Chimeric peptide glytm 12.7 79 0.0023 12.0 1.3 11 108-118 23-33 (38) 5 >2aqe_A Transcriptional adapto 11.9 83 0.0025 11.8 0.9 16 2-17 19-34 (90) 6 >2elj_A Transcriptional adapte 11.9 73 0.0022 12.1 0.6 16 2-17 19-34 (88) 7 >3c3f_A Alpha/beta peptide wit 11.5 86 0.0025 11.7 1.3 11 108-118 19-29 (34) 8 >1p65_A Nucleocapsid protein; 11.5 86 0.0025 11.7 2.5 21 3-23 14-34 (55) 9 >2cuj_A Transcriptional adapto 11.1 89 0.0026 11.7 0.9 16 2-17 37-52 (108) 10 >2yy0_A C-MYC-binding protein; 9.4 1E+02 0.003 11.3 2.4 19 103-121 18-36 (53) No 1 >>1u0i_A IAAL-E3; coiled-coil, de novo protein; NMR {Synthetic} (A:) Probab=48.92 E-value=14 Score=16.14 Aligned_cols=18 Identities=50% Similarity=0.617 Sum_probs=12.6 Q ss_pred HHHHHHHHHHHHHHHHHH Q ss_conf 679999999989987542 Q gi|254781226|r 101 MTKAEIEALEREIARLKA 118 (129) Q Consensus 101 ~~~~e~~~~~~e~~~~~~ 118 (129) -...|+-||++|||.|.- T Consensus 4 alekeiaalekeiaalek 21 (26) T 1u0i_A 4 ALEKEIAALEKEIAALEK 21 (26) T ss_dssp HHHHHHHHHHHHHHHHHC T ss_pred HHHHHHHHHHHHHHHHHH T ss_conf 899999999999999986 No 2 >>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} (A:) Probab=37.05 E-value=25 Score=14.84 Aligned_cols=19 Identities=47% Similarity=0.564 Sum_probs=15.1 Q ss_pred HHHHHHHHHHHHHHHHHHH Q ss_conf 6799999999899875422 Q gi|254781226|r 101 MTKAEIEALEREIARLKAK 119 (129) Q Consensus 101 ~~~~e~~~~~~e~~~~~~~ 119 (129) +.|+|++.-.-+||+|+.- T Consensus 11 KLHkeie~kd~eIa~Lk~E 29 (37) T 1t6f_A 11 KLHKEIEQKDNEIARLKKE 29 (37) T ss_dssp HHHHHHHHHHHHHHHHHHH T ss_pred HHHHHHHHHHHHHHHHHHH T ss_conf 9999998613899999982 No 3 >>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori 26695} (A:) Probab=15.51 E-value=65 Score=12.43 Aligned_cols=24 Identities=8% Similarity=0.134 Sum_probs=16.7 Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH Q ss_conf 567999999998998754223999 Q gi|254781226|r 100 GMTKAEIEALEREIARLKAKPIEE 123 (129) Q Consensus 100 ~~~~~e~~~~~~e~~~~~~~~~~~ 123 (129) ...-.+++.|+++|.+|-.-|++. T Consensus 20 a~l~~~y~~Ld~~I~~lE~~p~~d 43 (76) T 1zhc_A 20 DKIFEKHNQLDDDIKTAEQQNASD 43 (76) T ss_dssp HHHHHHHHHHHHHHHHHHTTCSCH T ss_pred HHHHHHHHHHHHHHHHHHCCCCCC T ss_conf 999999999999999987699980 No 4 >>1ihq_A Chimeric peptide glytm1BZIP: tropomyosin alpha chain, brain-3 and general control...; tropomyosin,EXON 1B,actin-binding; NMR {Rattus norvegicus} (A:) Probab=12.68 E-value=79 Score=11.96 Aligned_cols=11 Identities=64% Similarity=0.839 Sum_probs=7.0 Q ss_pred HHHHHHHHHHH Q ss_conf 99989987542 Q gi|254781226|r 108 ALEREIARLKA 118 (129) Q Consensus 108 ~~~~e~~~~~~ 118 (129) -|+-|||||+- T Consensus 23 HlENevARlkk 33 (38) T 1ihq_A 23 HLENEVARLKK 33 (38) T ss_dssp HHHHHHHHHHH T ss_pred HHHHHHHHHHH T ss_conf 68989999999 No 5 >>2aqe_A Transcriptional adaptor 2, ADA2 alpha; helix-turn-helix; NMR {Mus musculus} (A:) Probab=11.88 E-value=83 Score=11.82 Aligned_cols=16 Identities=31% Similarity=0.594 Sum_probs=13.0 Q ss_pred CHHHHCHHHHHHHHHH Q ss_conf 6233023301442399 Q gi|254781226|r 2 GRKVLTPEERMLCRRE 17 (129) Q Consensus 2 ~r~~~~~~~r~~C~kE 17 (129) |...|++.|+-+|..- T Consensus 19 g~~lLs~~E~~LC~~l 34 (90) T 2aqe_A 19 GTEKLNEKEKELCQVV 34 (90) T ss_dssp STTTSCHHHHHHHHHT T ss_pred CHHHCCHHHHHHHHHH T ss_conf 8012699999999992 No 6 >>2elj_A Transcriptional adapter 2; YDR448W, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Saccharomyces cerevisiae} (A:) Probab=11.86 E-value=73 Score=12.15 Aligned_cols=16 Identities=25% Similarity=0.478 Sum_probs=12.7 Q ss_pred CHHHHCHHHHHHHHHH Q ss_conf 6233023301442399 Q gi|254781226|r 2 GRKVLTPEERMLCRRE 17 (129) Q Consensus 2 ~r~~~~~~~r~~C~kE 17 (129) |...|+++|+.+|..- T Consensus 19 g~~lLs~~E~~LC~~l 34 (88) T 2elj_A 19 DYALLSNDEQQLCIQL 34 (88) T ss_dssp TCSSSCHHHHHHHHHT T ss_pred CCCCCCHHHHHHHHHH T ss_conf 8310799999999992 No 7 >>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain sequence on AN (alpha-alpha-alpha-beta)...; helix bundle, foldamer, coiled coil, unknown function; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} (A:) Probab=11.49 E-value=86 Score=11.74 Aligned_cols=11 Identities=36% Similarity=0.491 Sum_probs=7.5 Q ss_pred HHHHHHHHHHH Q ss_conf 99989987542 Q gi|254781226|r 108 ALEREIARLKA 118 (129) Q Consensus 108 ~~~~e~~~~~~ 118 (129) .++-||||||- T Consensus 19 hleneiar~kk 29 (34) T 3c3f_A 19 HXENEXARIXK 29 (34) T ss_dssp HHHHHHHHHHH T ss_pred HHHHHHHHHHH T ss_conf 70008999999 No 8 >>1p65_A Nucleocapsid protein; viral protein; 2.60A {Porcine respiratory and reproductivesyndrome virus} (A:1-55) Probab=11.46 E-value=86 Score=11.74 Aligned_cols=21 Identities=33% Similarity=0.634 Sum_probs=16.3 Q ss_pred HHHHCHHHHHHHHHHHHHHHH Q ss_conf 233023301442399999999 Q gi|254781226|r 3 RKVLTPEERMLCRREYKRRYY 23 (129) Q Consensus 3 r~~~~~~~r~~C~kE~~KkY~ 23 (129) |-.++|-||.+|..--+-++- T Consensus 14 RHh~Tp~Erqlcl~Siqtafn 34 (55) T 1p65_A 14 RHHFTPSERQLCLSSIQTAFN 34 (55) T ss_dssp GGGCCHHHHHHHHHHHHHHHH T ss_pred CCCCCHHHHHHHHHHHHHHHH T ss_conf 035788899999999999986 No 9 >>2cuj_A Transcriptional adaptor 2-like; transcriptional regulation, nuclear protein, structural genomics, NPPSFA; NMR {Mus musculus} (A:) Probab=11.09 E-value=89 Score=11.67 Aligned_cols=16 Identities=31% Similarity=0.594 Sum_probs=13.0 Q ss_pred CHHHHCHHHHHHHHHH Q ss_conf 6233023301442399 Q gi|254781226|r 2 GRKVLTPEERMLCRRE 17 (129) Q Consensus 2 ~r~~~~~~~r~~C~kE 17 (129) |...|++.|+-||..- T Consensus 37 g~~lLs~~E~~LC~~l 52 (108) T 2cuj_A 37 GTEKLNEKEKELCQVV 52 (108) T ss_dssp TTTTSCHHHHHHHHHT T ss_pred CCCCCCHHHHHHHHHH T ss_conf 8111799999999993 No 10 >>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens} (A:) Probab=9.39 E-value=1e+02 Score=11.30 Aligned_cols=19 Identities=42% Similarity=0.455 Sum_probs=14.7 Q ss_pred HHHHHHHHHHHHHHHHHHH Q ss_conf 9999999989987542239 Q gi|254781226|r 103 KAEIEALEREIARLKAKPI 121 (129) Q Consensus 103 ~~e~~~~~~e~~~~~~~~~ 121 (129) -.+++||.-||+-|+.||- T Consensus 18 ~~DvEaLrlEl~eLkqK~e 36 (53) T 2yy0_A 18 NPEIELLRLELAEMKEKYE 36 (53) T ss_dssp CHHHHHHHHHHHHHHHHHH T ss_pred CCHHHHHHHHHHHHHHHHH T ss_conf 6109999999999999999 Done!