Query         gi|254781226|ref|YP_003065639.1| hypothetical protein CLIBASIA_05665 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 129
No_of_seqs    67 out of 69
Neff          3.8 
Searched_HMMs 33803
Date          Wed Jun  1 23:21:38 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781226.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >1u0i_A IAAL-E3; coiled-coil,   48.9      14 0.00043   16.1   2.8   18  101-118     4-21  (26)
  2 >1t6f_A Geminin; coiled-coil,   37.0      25 0.00073   14.8   2.6   19  101-119    11-29  (37)
  3 >1zhc_A Hypothetical protein H  15.5      65  0.0019   12.4   1.2   24  100-123    20-43  (76)
  4 >1ihq_A Chimeric peptide glytm  12.7      79  0.0023   12.0   1.3   11  108-118    23-33  (38)
  5 >2aqe_A Transcriptional adapto  11.9      83  0.0025   11.8   0.9   16    2-17     19-34  (90)
  6 >2elj_A Transcriptional adapte  11.9      73  0.0022   12.1   0.6   16    2-17     19-34  (88)
  7 >3c3f_A Alpha/beta peptide wit  11.5      86  0.0025   11.7   1.3   11  108-118    19-29  (34)
  8 >1p65_A Nucleocapsid protein;   11.5      86  0.0025   11.7   2.5   21    3-23     14-34  (55)
  9 >2cuj_A Transcriptional adapto  11.1      89  0.0026   11.7   0.9   16    2-17     37-52  (108)
 10 >2yy0_A C-MYC-binding protein;   9.4   1E+02   0.003   11.3   2.4   19  103-121    18-36  (53)

No 1  
>>1u0i_A IAAL-E3; coiled-coil, de novo protein; NMR {Synthetic} (A:)
Probab=48.92  E-value=14  Score=16.14  Aligned_cols=18  Identities=50%  Similarity=0.617  Sum_probs=12.6

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q ss_conf             679999999989987542
Q gi|254781226|r  101 MTKAEIEALEREIARLKA  118 (129)
Q Consensus       101 ~~~~e~~~~~~e~~~~~~  118 (129)
                      -...|+-||++|||.|.-
T Consensus         4 alekeiaalekeiaalek   21 (26)
T 1u0i_A            4 ALEKEIAALEKEIAALEK   21 (26)
T ss_dssp             HHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHH
T ss_conf             899999999999999986


No 2  
>>1t6f_A Geminin; coiled-coil, cell cycle; 1.47A {Synthetic} (A:)
Probab=37.05  E-value=25  Score=14.84  Aligned_cols=19  Identities=47%  Similarity=0.564  Sum_probs=15.1

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q ss_conf             6799999999899875422
Q gi|254781226|r  101 MTKAEIEALEREIARLKAK  119 (129)
Q Consensus       101 ~~~~e~~~~~~e~~~~~~~  119 (129)
                      +.|+|++.-.-+||+|+.-
T Consensus        11 KLHkeie~kd~eIa~Lk~E   29 (37)
T 1t6f_A           11 KLHKEIEQKDNEIARLKKE   29 (37)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
T ss_conf             9999998613899999982


No 3  
>>1zhc_A Hypothetical protein HP1242; A-helical protein, unknown function; NMR {Helicobacter pylori 26695} (A:)
Probab=15.51  E-value=65  Score=12.43  Aligned_cols=24  Identities=8%  Similarity=0.134  Sum_probs=16.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             567999999998998754223999
Q gi|254781226|r  100 GMTKAEIEALEREIARLKAKPIEE  123 (129)
Q Consensus       100 ~~~~~e~~~~~~e~~~~~~~~~~~  123 (129)
                      ...-.+++.|+++|.+|-.-|++.
T Consensus        20 a~l~~~y~~Ld~~I~~lE~~p~~d   43 (76)
T 1zhc_A           20 DKIFEKHNQLDDDIKTAEQQNASD   43 (76)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCSCH
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf             999999999999999987699980


No 4  
>>1ihq_A Chimeric peptide glytm1BZIP: tropomyosin alpha chain, brain-3 and general control...; tropomyosin,EXON 1B,actin-binding; NMR {Rattus norvegicus} (A:)
Probab=12.68  E-value=79  Score=11.96  Aligned_cols=11  Identities=64%  Similarity=0.839  Sum_probs=7.0

Q ss_pred             HHHHHHHHHHH
Q ss_conf             99989987542
Q gi|254781226|r  108 ALEREIARLKA  118 (129)
Q Consensus       108 ~~~~e~~~~~~  118 (129)
                      -|+-|||||+-
T Consensus        23 HlENevARlkk   33 (38)
T 1ihq_A           23 HLENEVARLKK   33 (38)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
T ss_conf             68989999999


No 5  
>>2aqe_A Transcriptional adaptor 2, ADA2 alpha; helix-turn-helix; NMR {Mus musculus} (A:)
Probab=11.88  E-value=83  Score=11.82  Aligned_cols=16  Identities=31%  Similarity=0.594  Sum_probs=13.0

Q ss_pred             CHHHHCHHHHHHHHHH
Q ss_conf             6233023301442399
Q gi|254781226|r    2 GRKVLTPEERMLCRRE   17 (129)
Q Consensus         2 ~r~~~~~~~r~~C~kE   17 (129)
                      |...|++.|+-+|..-
T Consensus        19 g~~lLs~~E~~LC~~l   34 (90)
T 2aqe_A           19 GTEKLNEKEKELCQVV   34 (90)
T ss_dssp             STTTSCHHHHHHHHHT
T ss_pred             CHHHCCHHHHHHHHHH
T ss_conf             8012699999999992


No 6  
>>2elj_A Transcriptional adapter 2; YDR448W, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Saccharomyces cerevisiae} (A:)
Probab=11.86  E-value=73  Score=12.15  Aligned_cols=16  Identities=25%  Similarity=0.478  Sum_probs=12.7

Q ss_pred             CHHHHCHHHHHHHHHH
Q ss_conf             6233023301442399
Q gi|254781226|r    2 GRKVLTPEERMLCRRE   17 (129)
Q Consensus         2 ~r~~~~~~~r~~C~kE   17 (129)
                      |...|+++|+.+|..-
T Consensus        19 g~~lLs~~E~~LC~~l   34 (88)
T 2elj_A           19 DYALLSNDEQQLCIQL   34 (88)
T ss_dssp             TCSSSCHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHH
T ss_conf             8310799999999992


No 7  
>>3c3f_A Alpha/beta peptide with the GCN4-PLI SIDE chain sequence on AN (alpha-alpha-alpha-beta)...; helix bundle, foldamer, coiled coil, unknown function; HET: B3K B3D B3E BIL B3L BAL; 2.00A {Synthetic} (A:)
Probab=11.49  E-value=86  Score=11.74  Aligned_cols=11  Identities=36%  Similarity=0.491  Sum_probs=7.5

Q ss_pred             HHHHHHHHHHH
Q ss_conf             99989987542
Q gi|254781226|r  108 ALEREIARLKA  118 (129)
Q Consensus       108 ~~~~e~~~~~~  118 (129)
                      .++-||||||-
T Consensus        19 hleneiar~kk   29 (34)
T 3c3f_A           19 HXENEXARIXK   29 (34)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
T ss_conf             70008999999


No 8  
>>1p65_A Nucleocapsid protein; viral protein; 2.60A {Porcine respiratory and reproductivesyndrome virus} (A:1-55)
Probab=11.46  E-value=86  Score=11.74  Aligned_cols=21  Identities=33%  Similarity=0.634  Sum_probs=16.3

Q ss_pred             HHHHCHHHHHHHHHHHHHHHH
Q ss_conf             233023301442399999999
Q gi|254781226|r    3 RKVLTPEERMLCRREYKRRYY   23 (129)
Q Consensus         3 r~~~~~~~r~~C~kE~~KkY~   23 (129)
                      |-.++|-||.+|..--+-++-
T Consensus        14 RHh~Tp~Erqlcl~Siqtafn   34 (55)
T 1p65_A           14 RHHFTPSERQLCLSSIQTAFN   34 (55)
T ss_dssp             GGGCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHH
T ss_conf             035788899999999999986


No 9  
>>2cuj_A Transcriptional adaptor 2-like; transcriptional regulation, nuclear protein, structural genomics, NPPSFA; NMR {Mus musculus} (A:)
Probab=11.09  E-value=89  Score=11.67  Aligned_cols=16  Identities=31%  Similarity=0.594  Sum_probs=13.0

Q ss_pred             CHHHHCHHHHHHHHHH
Q ss_conf             6233023301442399
Q gi|254781226|r    2 GRKVLTPEERMLCRRE   17 (129)
Q Consensus         2 ~r~~~~~~~r~~C~kE   17 (129)
                      |...|++.|+-||..-
T Consensus        37 g~~lLs~~E~~LC~~l   52 (108)
T 2cuj_A           37 GTEKLNEKEKELCQVV   52 (108)
T ss_dssp             TTTTSCHHHHHHHHHT
T ss_pred             CCCCCCHHHHHHHHHH
T ss_conf             8111799999999993


No 10 
>>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens} (A:)
Probab=9.39  E-value=1e+02  Score=11.30  Aligned_cols=19  Identities=42%  Similarity=0.455  Sum_probs=14.7

Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q ss_conf             9999999989987542239
Q gi|254781226|r  103 KAEIEALEREIARLKAKPI  121 (129)
Q Consensus       103 ~~e~~~~~~e~~~~~~~~~  121 (129)
                      -.+++||.-||+-|+.||-
T Consensus        18 ~~DvEaLrlEl~eLkqK~e   36 (53)
T 2yy0_A           18 NPEIELLRLELAEMKEKYE   36 (53)
T ss_dssp             CHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHH
T ss_conf             6109999999999999999


Done!