RPS-BLAST 2.2.22 [Sep-27-2009]
Database: pdb70
24,244 sequences; 5,693,230 total letters
Searching..................................................done
Query= gi|254781226|ref|YP_003065639.1| hypothetical protein
CLIBASIA_05665 [Candidatus Liberibacter asiaticus str. psy62]
(129 letters)
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 39.2 bits (90), Expect = 3e-04
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 5/35 (14%)
Query: 73 DKMREKARQSYRKLYSKDSWIAPEEPMGMTKAEIE 107
+K K Q+ KLY+ DS AP + + KA +E
Sbjct: 18 EKQALKKLQASLKLYADDS--AP--ALAI-KATME 47
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening,
hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB:
1ls5_A*
Length = 375
Score = 28.7 bits (63), Expect = 0.37
Identities = 7/35 (20%), Positives = 17/35 (48%)
Query: 25 KNRDKILERRRRRYLKNKDKIRESYHQYYLKNKDK 59
+ DK+L+ ++ LKN K ++ + ++
Sbjct: 12 RPYDKVLKTISKKNLKNYIKETFNFFKSGYMKQNY 46
>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET:
PLP; 2.80A {Plasmodium falciparum}
Length = 405
Score = 27.9 bits (61), Expect = 0.66
Identities = 8/61 (13%), Positives = 14/61 (22%), Gaps = 6/61 (9%)
Query: 58 DKYREYKRRYYLKNRDKMREKARQSYRKLYSKDSW--IAPEEPM----GMTKAEIEALER 111
K + NR K +K W + + + E L+
Sbjct: 311 IKELSQLSQRITNNRILFFNKLETYQKKYNLNYDWNVYKKQRGLFSFVPLLAKIAEHLKT 370
Query: 112 E 112
Sbjct: 371 H 371
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl
reductase, beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 1688
Score = 27.5 bits (60), Expect = 0.86
Identities = 24/110 (21%), Positives = 45/110 (40%), Gaps = 17/110 (15%)
Query: 1 MGRKVLTPEERMLCR-REYKR--RYYLKNRDKILERRRR----RYLKNKDKIRESYHQYY 53
+GR V P + +L RE+ +Y N + ++ R+R R + KD +
Sbjct: 1215 IGRSVPAPGKGILTTAREHHSSVKYASPNLN--MKYRKRQLVTREAQIKDWVENELEALK 1272
Query: 54 LKNKDKYREYKRRYYLKNRDKMREKARQSYR--------KLYSKDSWIAP 95
L+ ++ E + + L+ ++ +A R Y +D IAP
Sbjct: 1273 LEAEEIPSEDQNEFLLERTREIHNEAESQLRAAQQQWGNDFYKRDPRIAP 1322
>2crw_A ARF GAP 3, ADP-ribosylation factor GTPase-activating protein 3;
arfgap domain, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 149
Score = 27.3 bits (60), Expect = 0.93
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Query: 57 KDKYREYKRRYYLKNRDKMREKARQSYRKLYSKDSWIAPEEP 98
KY + Y R+K++ A Q+ RK + D W+ P
Sbjct: 109 NAKYNSRAAQLY---REKIKSLASQATRK-HGTDLWLDSSGP 146
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl reductase,
beta-ketoacyl synthase, dehydratase; 4.00A
{Saccharomyces cerevisiae}
Length = 2006
Score = 26.8 bits (59), Expect = 1.3
Identities = 10/69 (14%), Positives = 23/69 (33%), Gaps = 19/69 (27%)
Query: 38 YLKNKDKIRESYHQYYLKNKDKYREYKRRYYLKNRDKMREKAR--QSYRKLYSK--D--S 91
Y +++R+ Y Y + + + E R K++++ +
Sbjct: 169 YF---EELRDLY--------QTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILE 217
Query: 92 WIA-PE-EP 98
W+ P P
Sbjct: 218 WLENPSNTP 226
>1s6y_A 6-phospho-beta-glucosidase; hydrolase, structural genomics, PSI,
protein structure initiative; 2.31A {Geobacillus
stearothermophilus} SCOP: c.2.1.5 d.162.1.2
Length = 450
Score = 27.0 bits (59), Expect = 1.4
Identities = 18/114 (15%), Positives = 36/114 (31%), Gaps = 4/114 (3%)
Query: 4 KVLTPEERMLCRREYKRRYYLKNRDKILERRRRRYLKNKDKIRESYHQYYLKNKDKYREY 63
+T + L + +KN + +LK + YH+YY + E
Sbjct: 217 VEVTEKVIDLVAHPDRSGVTMKNIVDL--GWEPDFLKGLKVLPCPYHRYYFQTDKMLAEE 274
Query: 64 KRRYYLK-NRDKMREKARQSYRKLY-SKDSWIAPEEPMGMTKAEIEALEREIAR 115
K R ++ ++ + +LY + I P + A +
Sbjct: 275 LEAAKTKGTRAEVVQQLEKELFELYKDPNLAIKPPQLEKRGGAYYSDAACSLIS 328
>2cvx_A Ribonucleoside-diphosphate reductase large chain 1; eukaryotic,
ribonucleotide reductase, DNTP regulation,
oxidoreductase; HET: DGT ADP; 2.20A {Saccharomyces
cerevisiae} PDB: 1zyz_A 2cvs_A 2cvt_A* 2cvu_A* 2cvv_A*
1zzd_A* 2cvw_A* 2cvy_A* 2eud_A* 2zlf_A 2zlg_A*
Length = 888
Score = 26.8 bits (58), Expect = 1.5
Identities = 7/46 (15%), Positives = 17/46 (36%)
Query: 19 KRRYYLKNRDKILERRRRRYLKNKDKIRESYHQYYLKNKDKYREYK 64
+R Y L+ ++ ER + ++ I + L+ +
Sbjct: 152 ERSYLLRINGQVAERPQHLIMRVALGIHGRDIEAALETYNLMSLKY 197
>2ra1_A Surface layer protein; triple coiled-coil, S-layer protein, protein
binding, sugar binding protein; 2.41A {Bacillus
stearothermophilus}
Length = 412
Score = 26.9 bits (59), Expect = 1.6
Identities = 18/99 (18%), Positives = 34/99 (34%), Gaps = 3/99 (3%)
Query: 25 KNRDKILERRRRRYLKNKDKIRESYHQYYLKNKDKYREYKRRYYLKNRDKMREKARQSYR 84
K E + K+ K E YH+ + K + R Y R+ +R + +
Sbjct: 102 KLDKMRQELKAAVDAKDLKKAEELYHKISYELKTRTVILDRVYGQSTRELLRSTFKADAQ 161
Query: 85 KLYSKDSWIAPEEPMGMTKAEIEALERE-IARLKAKPIE 122
L D I + +A++ + + KA +
Sbjct: 162 ALR--DRLIYDITVAMKAREAQDAVKAGNLDKAKAALDQ 198
>1xpm_A 3-hydroxy-3-methylglutaryl COA synthase; HMG-COA synthase, HMGS,
coenzyme A, thiolase fold, condensing enzyme; HET: HMG
CAA; 1.60A {Staphylococcus aureus subsp} SCOP: c.95.1.2
c.95.1.2 PDB: 1xpl_A* 1xpk_A* 1tvz_A 1txt_A*
Length = 396
Score = 26.8 bits (58), Expect = 1.6
Identities = 11/41 (26%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 28 DKILERRRR-RYLKNKDKIRESYHQYYLKN-KDKYREYKRR 66
+ +R + + +D + E H +YL N ++ REY R
Sbjct: 347 ETFFKRFDDVEFDEEQDAVHEDRHIFYLSNIENNVREYHRP 387
>2c71_A Glycoside hydrolase, family 11\:clostridium cellulosome enzyme,
dockerin type I\:polysaccharide...; acetyl-xylan,
esterases, metal-ION; 1.05A {Clostridium thermocellum}
SCOP: c.6.2.3 PDB: 2c79_A
Length = 216
Score = 26.0 bits (56), Expect = 2.5
Identities = 13/87 (14%), Positives = 22/87 (25%), Gaps = 5/87 (5%)
Query: 48 SYHQYYLKNKDKYREYKRRYYLKNRDKMREKARQSYRKLYSKDSWIAPEEPMGMTKAEIE 107
N D E+ + + I + E
Sbjct: 107 ETSPTLFNNVDLVFVGGLTANDWIPSTTAEQRAAAVINGVRDGTIILLHDVQPEPHPTPE 166
Query: 108 ALEREIARLKAK-----PIEELIYKRG 129
AL+ I LK++ + EL +G
Sbjct: 167 ALDIIIPTLKSRGYEFVTLTELFTLKG 193
>1ff3_A Peptide methionine sulfoxide reductase; alpha beta roll, PMSR,
MSRA, oxidoreductase; 1.90A {Escherichia coli} SCOP:
d.58.28.1 PDB: 2gt3_A 2iem_A
Length = 211
Score = 26.1 bits (57), Expect = 2.7
Identities = 8/15 (53%), Positives = 8/15 (53%), Gaps = 1/15 (6%)
Query: 47 ESYHQYYL-KNKDKY 60
E HQ YL KN Y
Sbjct: 183 EDDHQQYLHKNPYGY 197
>1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein,
gene regulation; 2.90A {Aquifex aeolicus VF5} SCOP:
b.34.14.1 c.55.3.10 PDB: 2f8s_A 2f8t_A 2nub_A
Length = 706
Score = 26.0 bits (57), Expect = 2.8
Identities = 14/69 (20%), Positives = 24/69 (34%)
Query: 19 KRRYYLKNRDKILERRRRRYLKNKDKIRESYHQYYLKNKDKYREYKRRYYLKNRDKMREK 78
+R +K R + K K+K E + ++ K + LKNR+ +
Sbjct: 180 PKRIRVKPIGIDFVGRVQDVFKAKEKGEEFFRLCMERSTHKSSKKAWEELLKNRELREKA 239
Query: 79 ARQSYRKLY 87
K Y
Sbjct: 240 FLVVLEKGY 248
>3i1m_E 30S ribosomal protein S5; ribosome structure, protein-RNA complex,
ribonucleoprotein, ribosomal protein, RNA-binding,
rRNA-binding, antibiotic resistance; 3.19A {Escherichia
coli k-12} PDB: 1vs7_E* 1vs5_E 3i1o_E 3i1q_E 3i1s_E
3i1z_E 3i21_E 2qal_E* 1p6g_E 1p87_E 2aw7_E 2avy_E 2i2u_E
2i2p_E* 2qan_E* 2qb9_E* 2qbb_E* 2qbd_E 2qbf_E 2qbh_E*
...
Length = 167
Score = 25.6 bits (56), Expect = 3.1
Identities = 10/35 (28%), Positives = 19/35 (54%), Gaps = 5/35 (14%)
Query: 98 PMGMTKAEIEALE-----REIARLKAKPIEELIYK 127
P+ + +A I+ LE +A + K +EE++ K
Sbjct: 133 PINVVRATIDGLENMNSPEMVAAKRGKSVEEILGK 167
>2j89_A Methionine sulfoxide reductase A; MSRA, poplar, oxidoreductase;
1.7A {Populus trichocarpa}
Length = 261
Score = 25.8 bits (56), Expect = 3.2
Identities = 7/21 (33%), Positives = 9/21 (42%), Gaps = 1/21 (4%)
Query: 47 ESYHQYYLKNKDKYREYKRRY 67
E YHQ YL K + +
Sbjct: 230 EEYHQQYLA-KGGRFGFMQSA 249
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1,
pyridoxal-5'-phosphate dependent racemase, pyridoxal
phosphate, isomerase; HET: PLP; 2.21A {Achromobacter
obae} PDB: 2zuk_A* 3dxw_A*
Length = 452
Score = 25.8 bits (56), Expect = 3.2
Identities = 11/41 (26%), Positives = 19/41 (46%), Gaps = 6/41 (14%)
Query: 93 IAPEEPMGMTKAEI----EALEREIARLKAKPIEELIYKRG 129
P P+ +T+ +I + L+R + L A EE+ G
Sbjct: 413 FTP--PLTITETDIHKALDLLDRAFSELSAVSNEEIAQFAG 451
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic
translation initiation factor 2balpha (EIF2balpha);
2.65A {Homo sapiens}
Length = 315
Score = 25.3 bits (55), Expect = 3.7
Identities = 9/43 (20%), Positives = 17/43 (39%), Gaps = 6/43 (13%)
Query: 83 YRKLYSKDSWIAPEEPMGMTKAEIEALEREIARLKAKPIEELI 125
++ +D P+ + A I L + R K + I+ L
Sbjct: 10 FKSQMKED----PDMASAV--AAIRTLLEFLKRDKGETIQGLR 46
>1fvg_A Peptide methionine sulfoxide reductase; oxidoreductase; 1.60A {Bos
taurus} SCOP: d.58.28.1 PDB: 1fva_A
Length = 199
Score = 25.3 bits (55), Expect = 3.7
Identities = 9/15 (60%), Positives = 10/15 (66%), Gaps = 1/15 (6%)
Query: 47 ESYHQYYL-KNKDKY 60
E YHQ YL K+ D Y
Sbjct: 183 EDYHQQYLSKDPDGY 197
>3e0m_A Peptide methionine sulfoxide reductase MSRA/MSRB 1; fusion, msrab,
linker, hinge, cell membrane, membrane, multifunctional
enzyme, oxidoreductase; 2.40A {Streptococcus pneumoniae}
Length = 313
Score = 25.3 bits (55), Expect = 3.8
Identities = 11/44 (25%), Positives = 13/44 (29%), Gaps = 1/44 (2%)
Query: 47 ESYHQ-YYLKNKDKYREYKRRYYLKNRDKMREKARQSYRKLYSK 89
E YHQ Y KN Y K + S L +
Sbjct: 136 EDYHQDYLRKNPSGYCHIDVTDADKPLIDAANYEKPSQEVLKAS 179
>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent
degradation, ligase; NMR {Saccharomyces cerevisiae}
SCOP: a.5.2.1 d.20.1.1
Length = 215
Score = 25.5 bits (55), Expect = 4.1
Identities = 10/63 (15%), Positives = 21/63 (33%), Gaps = 4/63 (6%)
Query: 53 YLKNKDKY----REYKRRYYLKNRDKMREKARQSYRKLYSKDSWIAPEEPMGMTKAEIEA 108
YL++++ + + R Y + + + +S D E +E
Sbjct: 130 YLRDRESFNKTAALWTRLYASETSNGQKGNVEESDLYGIDHDLIDEFESQGFEKDKIVEV 189
Query: 109 LER 111
L R
Sbjct: 190 LRR 192
>2q14_A Phosphohydrolase; BT4208, HD domain, structural genomics, joint
center for structural genomics, JCSG; HET: MSE ADP;
2.20A {Bacteroides thetaiotaomicron vpi-5482}
Length = 410
Score = 25.1 bits (54), Expect = 4.5
Identities = 11/78 (14%), Positives = 25/78 (32%), Gaps = 5/78 (6%)
Query: 10 ERMLCRREYKRRYYLKNRDKILERRRRRYLKNKDKIRESYHQYYL----KNKDKYREYKR 65
M+ R +K + + + + + I S Y++ K+ Y
Sbjct: 309 LGMINRNIFKVENSAEPIGEDRIKELTLQISQQLGITLSEANYFVSTPSIEKNMYDPADD 368
Query: 66 RYYLKNRD-KMREKARQS 82
+ +D ++ A S
Sbjct: 369 SIDIIYKDGTIKNIAEAS 386
>2fpq_A Botulinum neurotoxin D light chain; hexxh metalloprotease; 1.65A
{Clostridium botulinum}
Length = 444
Score = 25.2 bits (55), Expect = 5.0
Identities = 14/75 (18%), Positives = 22/75 (29%), Gaps = 6/75 (8%)
Query: 16 REYKRRYYLKNRDKILERRRRRYLKNKDKIRESYHQYYLKNKDKYREYKRR--YYLKNRD 73
R R L + I +R + +Y +KY K ++ N D
Sbjct: 294 RSQLREKALGHYKDIAKRLNNINKTIPSSWISNIDKYKKIFSEKYNFDKDNTGNFVVNID 353
Query: 74 KMREKARQSYRKLYS 88
K Y L +
Sbjct: 354 KFNS----LYSDLTN 364
>3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site,
oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter
simplex}
Length = 690
Score = 25.1 bits (54), Expect = 5.2
Identities = 9/28 (32%), Positives = 12/28 (42%)
Query: 88 SKDSWIAPEEPMGMTKAEIEALEREIAR 115
IAP + MTK +I+ L R
Sbjct: 133 VAPDTIAPIQARAMTKQDIDDLRRWHRN 160
>1dos_A Aldolase class II; lyase, classii fructose 1,6-bisphosphate
aldolase, glycolysis; 1.67A {Escherichia coli} SCOP:
c.1.10.2 PDB: 1b57_A* 1gyn_A 1zen_A
Length = 358
Score = 25.1 bits (54), Expect = 5.2
Identities = 8/57 (14%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Query: 35 RRRYLKNKDKIRESYHQYYLKNKDKYREYKRRYYLKN-RDKMREKARQSYRKLYSKD 90
Y N+ ++ +++ + Y R +L+ + M + +++++L + D
Sbjct: 300 LNYYKANEAYLQGQLGNPKGEDQPNKKYYDPRVWLRAGQTSMIARLEKAFQELNAID 356
>2mys_A Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus
gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1m8q_A* 1mvw_A*
1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A*
1o1f_A* 1o1g_A*
Length = 843
Score = 25.0 bits (54), Expect = 5.4
Identities = 5/30 (16%), Positives = 11/30 (36%)
Query: 11 RMLCRREYKRRYYLKNRDKILERRRRRYLK 40
L R EY+ + ++ R ++
Sbjct: 796 GFLMRVEYRAMVERRESIFCIQYNVRSFMN 825
>2fiq_A Putative tagatose 6-phosphate kinase 1; structural genomics, PSI,
protein structure initiative; 2.25A {Escherichia coli
O157} SCOP: c.1.10.7
Length = 420
Score = 24.8 bits (54), Expect = 6.0
Identities = 15/46 (32%), Positives = 22/46 (47%), Gaps = 6/46 (13%)
Query: 9 EERMLCRREYKRRYYL-KNRDKILERR-----RRRYLKNKDKIRES 48
EE ML +Y ++YY D +L+ R R RY +I+ S
Sbjct: 316 EEVMLDEPQYWKKYYRTGFNDSLLDIRYSLSDRIRYYWPHSRIKNS 361
>1w3f_A Hemolytic lectin from laetiporus sulphureus; toxin/lectin,
pore-forming toxin, oligomer, beta-trefoil; HET: NLC;
2.58A {Laetiporus sulphureus} PDB: 1w3a_A* 1w3g_A*
Length = 315
Score = 24.8 bits (54), Expect = 6.6
Identities = 8/35 (22%), Positives = 12/35 (34%)
Query: 37 RYLKNKDKIRESYHQYYLKNKDKYREYKRRYYLKN 71
Y N + QY+ + K Y LK+
Sbjct: 128 PYFWNHPQTEVFDDQYFTFLFEDMSIDKIEYDLKD 162
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of
motor, contractIle protein; HET: ADP; 2.30A {Argopecten
irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A*
1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A*
2w4t_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A
2ekw_A 2oy6_A* 3i5g_A 3i5f_A ...
Length = 837
Score = 24.7 bits (53), Expect = 6.6
Identities = 7/33 (21%), Positives = 17/33 (51%)
Query: 11 RMLCRREYKRRYYLKNRDKILERRRRRYLKNKD 43
L R+ YK+ + +++R R++L ++
Sbjct: 791 GYLIRKAYKKLQDQRIGLSVIQRNIRKWLVLRN 823
>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A
{Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A*
1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A*
2ay7_A* 2ay8_A* 2ay9_A*
Length = 394
Score = 24.6 bits (52), Expect = 7.3
Identities = 10/60 (16%), Positives = 21/60 (35%), Gaps = 6/60 (10%)
Query: 59 KYREYKRRYYLKNRDKMREKARQSYRKLYSKD--SWIAPEEPM----GMTKAEIEALERE 112
+ ++RE+ R L D ++A M G T +++ ++ E
Sbjct: 302 ADWMAELEAVRSGMLRLREQLAGELRDLSGSDRFGFVAEHRGMFSRLGATPEQVKRIKEE 361
>1nwa_A Peptide methionine sulfoxide reductase MSRA; oxidoreductase,
product complex, structural genomics, PSI, protein
structure initiative; 1.50A {Mycobacterium tuberculosis}
SCOP: d.58.28.1
Length = 203
Score = 24.6 bits (53), Expect = 7.6
Identities = 6/15 (40%), Positives = 8/15 (53%), Gaps = 1/15 (6%)
Query: 47 ESYHQYYL-KNKDKY 60
E HQ YL + + Y
Sbjct: 159 EPEHQDYLQRYPNGY 173
>3bon_A Neurotoxin A; metalloprotease; 1.20A {Clostridium botulinum} SCOP:
d.92.1.7 PDB: 3bok_A 3boo_A 2ilp_A* 2ima_A* 2imb_A*
2imc_A 2w2d_A 3c8b_A 3bwi_A 3c88_A 3c89_A 3c8a_A 3dda_A
3ddb_A 2isg_A 2ise_A 2ish_A 1xtg_A 1xtf_A 3ds9_A* ...
Length = 425
Score = 24.4 bits (53), Expect = 7.6
Identities = 11/73 (15%), Positives = 18/73 (24%), Gaps = 4/73 (5%)
Query: 16 REYKRRYYLKNRDKILERRRRRYLKNKDKIRESYHQYYLKNKDKYREYKRRYYLKNRDKM 75
R YY I + Y + K K E + ++ K
Sbjct: 279 ENEFRLYYYNKFKDIASTLNKAKSIVGTTASLQYMKNVFKEKYLLSEDTSGKFSVDKLKF 338
Query: 76 REKARQSYRKLYS 88
+ Y+ L
Sbjct: 339 DK----LYKMLTE 347
>1vjt_A Alpha-glucosidase; TM0752, structural genomics, JCSG, PSI, protein
structure initiative, joint center for structural
genomics, hydrolase; HET: NAD; 2.50A {Thermotoga
maritima} SCOP: c.2.1.5 d.162.1.2
Length = 483
Score = 24.3 bits (52), Expect = 8.2
Identities = 12/106 (11%), Positives = 33/106 (31%), Gaps = 14/106 (13%)
Query: 34 RRRRYLKNKDKIRESYHQYYLKNKDKYREYKRR--------------YYLKNRDKMREKA 79
+ L D +R +Y+ + K + + + + R+++ + A
Sbjct: 270 KFYGMLPIGDTVRNGSWKYHYNLETKKKWFGKFGGIDNEVERPKFHEQLRRARERLIKLA 329
Query: 80 RQSYRKLYSKDSWIAPEEPMGMTKAEIEALEREIARLKAKPIEELI 125
+ + K + PE + + + A K + +
Sbjct: 330 EEVQQNPGMKLTEEHPEIFPKGKLSGEQHIPFINAIANNKRVRLFL 375
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin
subfragment 2, heavy meromyosin, essential light chain,
motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP:
i.15.1.1 PDB: 3dtp_B 3dtp_A
Length = 1184
Score = 24.3 bits (52), Expect = 9.8
Identities = 14/121 (11%), Positives = 29/121 (23%), Gaps = 9/121 (7%)
Query: 11 RMLCRREYKRRYYLKNRDKILERRRRRYLKNKDKIRESYHQY---------YLKNKDKYR 61
L R+ + +R ++ R ++ +
Sbjct: 804 GYLARKAFAKRQQQLESIFCIQYNVRSFMNVXHWPWMXLFFXIXPLLKVTRQEEEMQAKD 863
Query: 62 EYKRRYYLKNRDKMREKARQSYRKLYSKDSWIAPEEPMGMTKAEIEALEREIARLKAKPI 121
E +R + + E + + +E + E RL AK
Sbjct: 864 EELQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQ 923
Query: 122 E 122
E
Sbjct: 924 E 924
Database: pdb70
Posted date: Jan 26, 2011 11:21 AM
Number of letters in database: 5,693,230
Number of sequences in database: 24,244
Lambda K H
0.320 0.136 0.389
Gapped
Lambda K H
0.267 0.0480 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 1,289,692
Number of extensions: 66996
Number of successful extensions: 690
Number of sequences better than 10.0: 1
Number of HSP's gapped: 673
Number of HSP's successfully gapped: 182
Length of query: 129
Length of database: 5,693,230
Length adjustment: 82
Effective length of query: 47
Effective length of database: 3,705,222
Effective search space: 174145434
Effective search space used: 174145434
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (24.0 bits)