Query         gi|254781227|ref|YP_003065640.1| hypothetical protein CLIBASIA_05670 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 68
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 33803
Date          Wed Jun  1 23:37:54 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781227.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 >2wj7_A Alpha-crystallin B cha  24.3      22 0.00066   17.4   0.4   24    3-28     13-36  (50)
  2 >2ox1_A 3-dehydroquinate dehyd  22.6      64  0.0019   15.0   3.2   51   12-62     14-71  (196)
  3 >1r89_A TRNA nucleotidyltransf  21.2      65  0.0019   15.0   2.3   38   18-57     57-94  (137)
  4 >3ffh_A Histidinol-phosphate a   8.9      86  0.0025   14.4   0.1   14   17-30     15-28  (57)
  5 >2r9g_A AAA ATPase, central re   8.3 1.5E+02  0.0045   13.1   1.2   10   58-67     16-25  (103)
  6 >3d06_A Cellular tumor antigen   7.3 1.9E+02  0.0057   12.6   1.9   27   18-44     98-129 (200)
  7 >3e7w_A D-alanine--poly(phosph   6.8 1.7E+02  0.0049   12.9   0.7   39   22-60     58-98  (143)
  8 >1o75_A 47 kDa membrane antige   6.3 2.2E+02  0.0064   12.3   1.7   23   18-40     69-91  (128)
  9 >2c1m_B Nucleoporin 50 kDa; pr   6.0 1.8E+02  0.0052   12.7   0.6   20   14-33      2-21  (46)
 10 >3ctd_A Putative ATPase, AAA f   6.0 2.2E+02  0.0066   12.2   1.2    9   59-67     38-46  (127)

No 1  
>>2wj7_A Alpha-crystallin B chain; desmin-related myopathy, phosphoprotein, disease mutation, eye lens protein, methylation, polymorphism, glycoprotein; 2.63A {Homo sapiens} (A:1-21,A:66-94)
Probab=24.30  E-value=22  Score=17.39  Aligned_cols=24  Identities=42%  Similarity=0.682  Sum_probs=16.6

Q ss_pred             EEEEHHHHHHHHHCCCEEEEEECCCC
Q ss_conf             02110333101002750234204410
Q gi|254781227|r    3 TVKLGVKHFDTRKRGRTTEIRADGWM   28 (68)
Q Consensus         3 tvklgvkhfdtrkrgrtteiradgwm   28 (68)
                      .|.|.|||||.-.  -|..+..||-.
T Consensus        13 svnldvkhfDPl~--ITsSLSsDGVL   36 (50)
T 2wj7_A           13 SVNLDVKHFDPLT--ITSSLSSDGVL   36 (50)
T ss_dssp             EEEEECTTSCGGG--CEEEECTTSEE
T ss_pred             EEEEECCCCCHHH--EEEEECCCCEE
T ss_conf             9999999999668--69998889889


No 2  
>>2ox1_A 3-dehydroquinate dehydratase; (beta-alpha)8 barrel, lyase; 2.33A {Archaeoglobus fulgidus} (A:)
Probab=22.61  E-value=64  Score=15.01  Aligned_cols=51  Identities=14%  Similarity=0.187  Sum_probs=39.4

Q ss_pred             HHHHCCCEEEEEECCCCCCCCCEEEEEEEEECC-------CCCCHHHHHHHHHHHHHH
Q ss_conf             010027502342044103468236899998406-------775689999999999999
Q gi|254781227|r   12 DTRKRGRTTEIRADGWMKEDNTARLSVVVSVAG-------ETTDEEKLREYKEFVISA   62 (68)
Q Consensus        12 dtrkrgrtteiradgwmkedntarlsvvvsvag-------ettdeeklreykefvisa   62 (68)
                      +..+..---|+|.|-|..-++...+.+++.+--       +-++++.+..|++...+.
T Consensus        14 e~~~~aD~vElRlD~l~~~~~~~~lpiI~T~R~~~eGG~~~~s~~~~~~~l~~~~~~~   71 (196)
T 2ox1_A           14 ELAEKADVVELRIDLFDFSGARVDKEKILTCRRVSDGGKFEGDERERIEKMKRAFDSL   71 (196)
T ss_dssp             HHTTTCSEEEEETTTSCCTTSCCCSEEEEECCBGGGTSSBCSCHHHHHHHHHHHHHHH
T ss_pred             HHCCCCCEEEEEECCCCCCCCCCCCCEEEEECCHHHCCCCCCCHHHHHHHHHHHHHHC
T ss_conf             7513999999976200075511368779997405888988899999999999999754


No 3  
>>1r89_A TRNA nucleotidyltransferase; CCA adding enzyme, incoming nucleotide, nucleotidyltransferase superfamily; HET: CTP; 1.80A {Archaeoglobus fulgidus} (A:256-337,A:383-437)
Probab=21.25  E-value=65  Score=14.97  Aligned_cols=38  Identities=24%  Similarity=0.136  Sum_probs=26.2

Q ss_pred             CEEEEEECCCCCCCCCEEEEEEEEECCCCCCHHHHHHHHH
Q ss_conf             5023420441034682368999984067756899999999
Q gi|254781227|r   18 RTTEIRADGWMKEDNTARLSVVVSVAGETTDEEKLREYKE   57 (68)
Q Consensus        18 rtteiradgwmkedntarlsvvvsvagettdeeklreyke   57 (68)
                      --.-||.+.|+.+++..- ..-. ...+||.||..|.|..
T Consensus        57 GF~Virs~~wsDed~~~I-llEL-~v~e~~~~~~~~~~~~   94 (137)
T 1r89_A           57 NFMPLRSAFKASEEFCYL-LFEC-QIKETTPEEGVRSYAS   94 (137)
T ss_dssp             TCCEEEEEEEECSSEEEE-EEEE-SCSCSSHHHHHHHHHH
T ss_pred             CCEEEEEEEEECCCCEEE-EEEE-ECCCCCHHHHHHHHHH
T ss_conf             988997357627983899-9997-4165789999999874


No 4  
>>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria innocua CLIP11262, structural genomics, PSI-2, protein structure initiative; 2.31A {Listeria innocua} (A:44-83,A:254-270)
Probab=8.89  E-value=86  Score=14.36  Aligned_cols=14  Identities=43%  Similarity=0.762  Sum_probs=10.6

Q ss_pred             CCEEEEEECCCCCC
Q ss_conf             75023420441034
Q gi|254781227|r   17 GRTTEIRADGWMKE   30 (68)
Q Consensus        17 grtteiradgwmke   30 (68)
                      .-.|||-.|||..+
T Consensus        15 ~veTEIYPDGWASs   28 (57)
T 3ffh_A           15 SVETEIYPDGWASS   28 (57)
T ss_dssp             BSCCCBC----CHH
T ss_pred             HHHHCCCCCCCHHH
T ss_conf             67516699988899


No 5  
>>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initiative; 2.09A {Enterococcus faecium DO} (A:1-103)
Probab=8.31  E-value=1.5e+02  Score=13.09  Aligned_cols=10  Identities=70%  Similarity=0.753  Sum_probs=7.3

Q ss_pred             HHHHHHHHHC
Q ss_conf             9999988740
Q gi|254781227|r   58 FVISAFAKAI   67 (68)
Q Consensus        58 fvisafakai   67 (68)
                      -+||||-|.|
T Consensus        16 d~iSA~~KSi   25 (103)
T 2r9g_A           16 DVISAFQKSI   25 (103)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
T ss_conf             9999999998


No 6  
>>3d06_A Cellular tumor antigen P53; mutant protein, loop-sheet-helix motif, acetylation, activator, alternative splicing, anti-oncogene, apoptosis; 1.20A {Homo sapiens} PDB: 3d05_A 3d07_A 2ac0_A 2ady_A 2ahi_A 2ata_A 2ocj_A 1tup_A* 1tsr_A 3d08_A 3d0a_A* 2fej_A 2h1l_M 1ycs_A 3d09_A 1gzh_C 2pcx_A 2bio_A 1gzh_A 1uol_A ... (A:)
Probab=7.26  E-value=1.9e+02  Score=12.56  Aligned_cols=27  Identities=37%  Similarity=0.505  Sum_probs=18.7

Q ss_pred             CEEEEEECC-----CCCCCCCEEEEEEEEECC
Q ss_conf             502342044-----103468236899998406
Q gi|254781227|r   18 RTTEIRADG-----WMKEDNTARLSVVVSVAG   44 (68)
Q Consensus        18 rtteiradg-----wmkedntarlsvvvsvag   44 (68)
                      +..-||.+|     +...++|.|+||+|-...
T Consensus        98 ~~HliR~egn~~a~Y~~d~~t~R~sV~VP~e~  129 (200)
T 3d06_A           98 PQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEP  129 (200)
T ss_dssp             TTCSEEEESCTTCEEEECTTTCCEEEEEECCC
T ss_pred             CCEEEEECCCCCEEEEECCCCCEEEEEEECCC
T ss_conf             64489975887417865698868999863578


No 7  
>>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* (A:135-164,A:399-511)
Probab=6.75  E-value=1.7e+02  Score=12.89  Aligned_cols=39  Identities=13%  Similarity=0.022  Sum_probs=15.2

Q ss_pred             EEECCCCCCCCCEEEEE-EEEECCCCCCHHH-HHHHHHHHH
Q ss_conf             42044103468236899-9984067756899-999999999
Q gi|254781227|r   22 IRADGWMKEDNTARLSV-VVSVAGETTDEEK-LREYKEFVI   60 (68)
Q Consensus        22 iradgwmkedntarlsv-vvsvagettdeek-lreykefvi   60 (68)
                      .-+-++-.++..+++-. +|.-.+...++.. +.+-++++-
T Consensus        58 a~Vv~~~~~~~~~~lvA~vv~~~~~~~~~~~~~~~i~~~L~   98 (143)
T 3e7w_A           58 AVVIPYQPNGTVEYLIAAIVPEEHEFEKEFQLTSAIKKELA   98 (143)
T ss_dssp             EEEEEECSSSSCCEEEEEEEECCCCCSSHHHHHHHHHHHHH
T ss_pred             EEEEEEECCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf             99998867888518999999789888887999999999998


No 8  
>>1o75_A 47 kDa membrane antigen; LIPOPROTEINULLNTIGEN, penicillin-binding protein, integral membrane lipoprotein, immunogen, four-domain protein; HET: PDX; 1.95A {Treponema pallidum} (A:208-335)
Probab=6.30  E-value=2.2e+02  Score=12.29  Aligned_cols=23  Identities=30%  Similarity=0.471  Sum_probs=17.3

Q ss_pred             CEEEEEECCCCCCCCCEEEEEEE
Q ss_conf             50234204410346823689999
Q gi|254781227|r   18 RTTEIRADGWMKEDNTARLSVVV   40 (68)
Q Consensus        18 rtteiradgwmkedntarlsvvv   40 (68)
                      --|..-||.||+-.-|.+++.-.
T Consensus        69 YGTKfAADnWmQlGlt~s~rC~l   91 (128)
T 1o75_A           69 YGTKHSADSWWKTGRVPRISCGI   91 (128)
T ss_dssp             ECCCBTTTEECCSSSSCEEEEEE
T ss_pred             CCCCCCHHHHHHHCCCCCEEECC
T ss_conf             36520034578745775236646


No 9  
>>2c1m_B Nucleoporin 50 kDa; protein transport/membrane protein, nuclear transport/complex, importin-alpha, nucleoporin NUP50; 2.2A {Mus musculus} (B:)
Probab=6.04  E-value=1.8e+02  Score=12.74  Aligned_cols=20  Identities=30%  Similarity=0.518  Sum_probs=16.7

Q ss_pred             HHCCCEEEEEECCCCCCCCC
Q ss_conf             00275023420441034682
Q gi|254781227|r   14 RKRGRTTEIRADGWMKEDNT   33 (68)
Q Consensus        14 rkrgrtteiradgwmkednt   33 (68)
                      -||+-+.+|-.|.|-.||..
T Consensus         2 aKR~A~~qlt~dn~~~edd~   21 (46)
T 2c1m_B            2 AKRVAEKELTDRNWDEEDEV   21 (46)
T ss_dssp             CCCCCSSCCCTTTSSCCCCC
T ss_pred             CCCCCCCCCCCCCCCCCCCC
T ss_conf             73210410232465433464


No 10 
>>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} (A:1-127)
Probab=6.02  E-value=2.2e+02  Score=12.20  Aligned_cols=9  Identities=78%  Similarity=0.981  Sum_probs=0.0

Q ss_pred             HHHHHHHHC
Q ss_conf             999988740
Q gi|254781227|r   59 VISAFAKAI   67 (68)
Q Consensus        59 visafakai   67 (68)
                      +||||-|.|
T Consensus        38 ~iSAl~KSI   46 (127)
T 3ctd_A           38 VISAFIKSI   46 (127)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
T ss_conf             999999986


Done!