Query gi|254781227|ref|YP_003065640.1| hypothetical protein CLIBASIA_05670 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 68 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 33803 Date Wed Jun 1 23:37:54 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781227.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 >2wj7_A Alpha-crystallin B cha 24.3 22 0.00066 17.4 0.4 24 3-28 13-36 (50) 2 >2ox1_A 3-dehydroquinate dehyd 22.6 64 0.0019 15.0 3.2 51 12-62 14-71 (196) 3 >1r89_A TRNA nucleotidyltransf 21.2 65 0.0019 15.0 2.3 38 18-57 57-94 (137) 4 >3ffh_A Histidinol-phosphate a 8.9 86 0.0025 14.4 0.1 14 17-30 15-28 (57) 5 >2r9g_A AAA ATPase, central re 8.3 1.5E+02 0.0045 13.1 1.2 10 58-67 16-25 (103) 6 >3d06_A Cellular tumor antigen 7.3 1.9E+02 0.0057 12.6 1.9 27 18-44 98-129 (200) 7 >3e7w_A D-alanine--poly(phosph 6.8 1.7E+02 0.0049 12.9 0.7 39 22-60 58-98 (143) 8 >1o75_A 47 kDa membrane antige 6.3 2.2E+02 0.0064 12.3 1.7 23 18-40 69-91 (128) 9 >2c1m_B Nucleoporin 50 kDa; pr 6.0 1.8E+02 0.0052 12.7 0.6 20 14-33 2-21 (46) 10 >3ctd_A Putative ATPase, AAA f 6.0 2.2E+02 0.0066 12.2 1.2 9 59-67 38-46 (127) No 1 >>2wj7_A Alpha-crystallin B chain; desmin-related myopathy, phosphoprotein, disease mutation, eye lens protein, methylation, polymorphism, glycoprotein; 2.63A {Homo sapiens} (A:1-21,A:66-94) Probab=24.30 E-value=22 Score=17.39 Aligned_cols=24 Identities=42% Similarity=0.682 Sum_probs=16.6 Q ss_pred EEEEHHHHHHHHHCCCEEEEEECCCC Q ss_conf 02110333101002750234204410 Q gi|254781227|r 3 TVKLGVKHFDTRKRGRTTEIRADGWM 28 (68) Q Consensus 3 tvklgvkhfdtrkrgrtteiradgwm 28 (68) .|.|.|||||.-. -|..+..||-. T Consensus 13 svnldvkhfDPl~--ITsSLSsDGVL 36 (50) T 2wj7_A 13 SVNLDVKHFDPLT--ITSSLSSDGVL 36 (50) T ss_dssp EEEEECTTSCGGG--CEEEECTTSEE T ss_pred EEEEECCCCCHHH--EEEEECCCCEE T ss_conf 9999999999668--69998889889 No 2 >>2ox1_A 3-dehydroquinate dehydratase; (beta-alpha)8 barrel, lyase; 2.33A {Archaeoglobus fulgidus} (A:) Probab=22.61 E-value=64 Score=15.01 Aligned_cols=51 Identities=14% Similarity=0.187 Sum_probs=39.4 Q ss_pred HHHHCCCEEEEEECCCCCCCCCEEEEEEEEECC-------CCCCHHHHHHHHHHHHHH Q ss_conf 010027502342044103468236899998406-------775689999999999999 Q gi|254781227|r 12 DTRKRGRTTEIRADGWMKEDNTARLSVVVSVAG-------ETTDEEKLREYKEFVISA 62 (68) Q Consensus 12 dtrkrgrtteiradgwmkedntarlsvvvsvag-------ettdeeklreykefvisa 62 (68) +..+..---|+|.|-|..-++...+.+++.+-- +-++++.+..|++...+. T Consensus 14 e~~~~aD~vElRlD~l~~~~~~~~lpiI~T~R~~~eGG~~~~s~~~~~~~l~~~~~~~ 71 (196) T 2ox1_A 14 ELAEKADVVELRIDLFDFSGARVDKEKILTCRRVSDGGKFEGDERERIEKMKRAFDSL 71 (196) T ss_dssp HHTTTCSEEEEETTTSCCTTSCCCSEEEEECCBGGGTSSBCSCHHHHHHHHHHHHHHH T ss_pred HHCCCCCEEEEEECCCCCCCCCCCCCEEEEECCHHHCCCCCCCHHHHHHHHHHHHHHC T ss_conf 7513999999976200075511368779997405888988899999999999999754 No 3 >>1r89_A TRNA nucleotidyltransferase; CCA adding enzyme, incoming nucleotide, nucleotidyltransferase superfamily; HET: CTP; 1.80A {Archaeoglobus fulgidus} (A:256-337,A:383-437) Probab=21.25 E-value=65 Score=14.97 Aligned_cols=38 Identities=24% Similarity=0.136 Sum_probs=26.2 Q ss_pred CEEEEEECCCCCCCCCEEEEEEEEECCCCCCHHHHHHHHH Q ss_conf 5023420441034682368999984067756899999999 Q gi|254781227|r 18 RTTEIRADGWMKEDNTARLSVVVSVAGETTDEEKLREYKE 57 (68) Q Consensus 18 rtteiradgwmkedntarlsvvvsvagettdeeklreyke 57 (68) --.-||.+.|+.+++..- ..-. ...+||.||..|.|.. T Consensus 57 GF~Virs~~wsDed~~~I-llEL-~v~e~~~~~~~~~~~~ 94 (137) T 1r89_A 57 NFMPLRSAFKASEEFCYL-LFEC-QIKETTPEEGVRSYAS 94 (137) T ss_dssp TCCEEEEEEEECSSEEEE-EEEE-SCSCSSHHHHHHHHHH T ss_pred CCEEEEEEEEECCCCEEE-EEEE-ECCCCCHHHHHHHHHH T ss_conf 988997357627983899-9997-4165789999999874 No 4 >>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria innocua CLIP11262, structural genomics, PSI-2, protein structure initiative; 2.31A {Listeria innocua} (A:44-83,A:254-270) Probab=8.89 E-value=86 Score=14.36 Aligned_cols=14 Identities=43% Similarity=0.762 Sum_probs=10.6 Q ss_pred CCEEEEEECCCCCC Q ss_conf 75023420441034 Q gi|254781227|r 17 GRTTEIRADGWMKE 30 (68) Q Consensus 17 grtteiradgwmke 30 (68) .-.|||-.|||..+ T Consensus 15 ~veTEIYPDGWASs 28 (57) T 3ffh_A 15 SVETEIYPDGWASS 28 (57) T ss_dssp BSCCCBC----CHH T ss_pred HHHHCCCCCCCHHH T ss_conf 67516699988899 No 5 >>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initiative; 2.09A {Enterococcus faecium DO} (A:1-103) Probab=8.31 E-value=1.5e+02 Score=13.09 Aligned_cols=10 Identities=70% Similarity=0.753 Sum_probs=7.3 Q ss_pred HHHHHHHHHC Q ss_conf 9999988740 Q gi|254781227|r 58 FVISAFAKAI 67 (68) Q Consensus 58 fvisafakai 67 (68) -+||||-|.| T Consensus 16 d~iSA~~KSi 25 (103) T 2r9g_A 16 DVISAFQKSI 25 (103) T ss_dssp HHHHHHHHHH T ss_pred HHHHHHHHHH T ss_conf 9999999998 No 6 >>3d06_A Cellular tumor antigen P53; mutant protein, loop-sheet-helix motif, acetylation, activator, alternative splicing, anti-oncogene, apoptosis; 1.20A {Homo sapiens} PDB: 3d05_A 3d07_A 2ac0_A 2ady_A 2ahi_A 2ata_A 2ocj_A 1tup_A* 1tsr_A 3d08_A 3d0a_A* 2fej_A 2h1l_M 1ycs_A 3d09_A 1gzh_C 2pcx_A 2bio_A 1gzh_A 1uol_A ... (A:) Probab=7.26 E-value=1.9e+02 Score=12.56 Aligned_cols=27 Identities=37% Similarity=0.505 Sum_probs=18.7 Q ss_pred CEEEEEECC-----CCCCCCCEEEEEEEEECC Q ss_conf 502342044-----103468236899998406 Q gi|254781227|r 18 RTTEIRADG-----WMKEDNTARLSVVVSVAG 44 (68) Q Consensus 18 rtteiradg-----wmkedntarlsvvvsvag 44 (68) +..-||.+| +...++|.|+||+|-... T Consensus 98 ~~HliR~egn~~a~Y~~d~~t~R~sV~VP~e~ 129 (200) T 3d06_A 98 PQHLIRVEGNLRVEYLDDRNTFRHSVVVPYEP 129 (200) T ss_dssp TTCSEEEESCTTCEEEECTTTCCEEEEEECCC T ss_pred CCEEEEECCCCCEEEEECCCCCEEEEEEECCC T ss_conf 64489975887417865698868999863578 No 7 >>3e7w_A D-alanine--poly(phosphoribitol) ligase subunit 1; DLTA, non-ribosomal peptide synthetase, NRPS, adenylation domain, D-alanylation; HET: AMP; 2.28A {Bacillus subtilis} PDB: 3e7x_A* (A:135-164,A:399-511) Probab=6.75 E-value=1.7e+02 Score=12.89 Aligned_cols=39 Identities=13% Similarity=0.022 Sum_probs=15.2 Q ss_pred EEECCCCCCCCCEEEEE-EEEECCCCCCHHH-HHHHHHHHH Q ss_conf 42044103468236899-9984067756899-999999999 Q gi|254781227|r 22 IRADGWMKEDNTARLSV-VVSVAGETTDEEK-LREYKEFVI 60 (68) Q Consensus 22 iradgwmkedntarlsv-vvsvagettdeek-lreykefvi 60 (68) .-+-++-.++..+++-. +|.-.+...++.. +.+-++++- T Consensus 58 a~Vv~~~~~~~~~~lvA~vv~~~~~~~~~~~~~~~i~~~L~ 98 (143) T 3e7w_A 58 AVVIPYQPNGTVEYLIAAIVPEEHEFEKEFQLTSAIKKELA 98 (143) T ss_dssp EEEEEECSSSSCCEEEEEEEECCCCCSSHHHHHHHHHHHHH T ss_pred EEEEEEECCCCCEEEEEEEEECCCCCCCHHHHHHHHHHHHH T ss_conf 99998867888518999999789888887999999999998 No 8 >>1o75_A 47 kDa membrane antigen; LIPOPROTEINULLNTIGEN, penicillin-binding protein, integral membrane lipoprotein, immunogen, four-domain protein; HET: PDX; 1.95A {Treponema pallidum} (A:208-335) Probab=6.30 E-value=2.2e+02 Score=12.29 Aligned_cols=23 Identities=30% Similarity=0.471 Sum_probs=17.3 Q ss_pred CEEEEEECCCCCCCCCEEEEEEE Q ss_conf 50234204410346823689999 Q gi|254781227|r 18 RTTEIRADGWMKEDNTARLSVVV 40 (68) Q Consensus 18 rtteiradgwmkedntarlsvvv 40 (68) --|..-||.||+-.-|.+++.-. T Consensus 69 YGTKfAADnWmQlGlt~s~rC~l 91 (128) T 1o75_A 69 YGTKHSADSWWKTGRVPRISCGI 91 (128) T ss_dssp ECCCBTTTEECCSSSSCEEEEEE T ss_pred CCCCCCHHHHHHHCCCCCEEECC T ss_conf 36520034578745775236646 No 9 >>2c1m_B Nucleoporin 50 kDa; protein transport/membrane protein, nuclear transport/complex, importin-alpha, nucleoporin NUP50; 2.2A {Mus musculus} (B:) Probab=6.04 E-value=1.8e+02 Score=12.74 Aligned_cols=20 Identities=30% Similarity=0.518 Sum_probs=16.7 Q ss_pred HHCCCEEEEEECCCCCCCCC Q ss_conf 00275023420441034682 Q gi|254781227|r 14 RKRGRTTEIRADGWMKEDNT 33 (68) Q Consensus 14 rkrgrtteiradgwmkednt 33 (68) -||+-+.+|-.|.|-.||.. T Consensus 2 aKR~A~~qlt~dn~~~edd~ 21 (46) T 2c1m_B 2 AKRVAEKELTDRNWDEEDEV 21 (46) T ss_dssp CCCCCSSCCCTTTSSCCCCC T ss_pred CCCCCCCCCCCCCCCCCCCC T ss_conf 73210410232465433464 No 10 >>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} (A:1-127) Probab=6.02 E-value=2.2e+02 Score=12.20 Aligned_cols=9 Identities=78% Similarity=0.981 Sum_probs=0.0 Q ss_pred HHHHHHHHC Q ss_conf 999988740 Q gi|254781227|r 59 VISAFAKAI 67 (68) Q Consensus 59 visafakai 67 (68) +||||-|.| T Consensus 38 ~iSAl~KSI 46 (127) T 3ctd_A 38 VISAFIKSI 46 (127) T ss_dssp HHHHHHHHH T ss_pred HHHHHHHHH T ss_conf 999999986 Done!