Query gi|254781227|ref|YP_003065640.1| hypothetical protein CLIBASIA_05670 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 68
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 23785
Date Wed Jun 1 02:09:39 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781227.hhm -d /home/congqian_1/database/pdb/pdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2z5a_B HA3, hemoagglutinin com 5.5 1.7E+02 0.0071 12.0 2.0 26 21-46 13-38 (420)
2 2r9g_A AAA ATPase, central reg 5.4 1.7E+02 0.0073 12.0 1.2 10 49-58 182-191 (204)
3 2z5a_A HA3, hemoagglutinin com 5.2 1.4E+02 0.0058 12.5 0.3 24 20-43 48-71 (205)
4 2c1m_B Nucleoporin 50 kDa; pro 5.1 1.5E+02 0.0064 12.3 0.6 19 14-32 2-20 (46)
5 1ney_A TIM, triosephosphate is 3.7 98 0.0041 13.3 -1.3 53 9-62 93-145 (247)
6 2z5h_T TNT, troponin T, fast s 3.4 1.9E+02 0.008 11.8 -0.0 13 6-18 24-36 (55)
7 2dii_A TFIIH basal transcripti 3.4 2.5E+02 0.011 11.1 1.3 15 48-62 26-40 (61)
8 3ctd_A Putative ATPase, AAA fa 3.0 2.8E+02 0.012 10.9 1.2 10 58-67 37-46 (213)
9 1cqt_I POU domain, class 2, as 3.0 2.8E+02 0.012 10.9 0.4 17 3-19 23-39 (44)
10 3lo3_A Uncharacterized conserv 2.9 2.9E+02 0.012 10.9 3.1 29 37-65 4-32 (94)
No 1
>2z5a_B HA3, hemoagglutinin component HA-70; lectin, hemagglutinin, botulinum toxin; 2.60A {Clostridium botulinum d bacteriophage} PDB: 2zoe_B* 2zs6_B
Probab=5.52 E-value=1.7e+02 Score=12.04 Aligned_cols=26 Identities=12% Similarity=0.360 Sum_probs=13.4
Q ss_pred EEEECCCCCCCCCEEEEEEEEECCCC
Q ss_conf 34204410346823689999840677
Q gi|254781227|r 21 EIRADGWMKEDNTARLSVVVSVAGET 46 (68)
Q Consensus 21 eiradgwmkedntarlsvvvsvaget 46 (68)
--|.||||......-++-.+.-+|+|
T Consensus 13 InKGDGwIlt~d~~liGt~ii~~~sT 38 (420)
T 2z5a_B 13 INKGDGYMRTNDKDLIGTLLIESSTS 38 (420)
T ss_dssp EECCSCEEESTTTTEEEEEEECTTCE
T ss_pred EECCCEEEECCCCCCCCCEEECCCCC
T ss_conf 96586068717844112057428975
No 2
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initiative; 2.09A {Enterococcus faecium DO} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=5.39 E-value=1.7e+02 Score=11.99 Aligned_cols=10 Identities=20% Similarity=-0.001 Sum_probs=5.2
Q ss_pred HHHHHHHHHH
Q ss_conf 8999999999
Q gi|254781227|r 49 EEKLREYKEF 58 (68)
Q Consensus 49 eeklreykef 58 (68)
|.+++++-+.
T Consensus 182 E~~i~~r~~~ 191 (204)
T 2r9g_A 182 EQALGQQYYR 191 (204)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 9999999999
No 3
>2z5a_A HA3, hemoagglutinin component HA-70; lectin, hemagglutinin, botulinum toxin; 2.60A {Clostridium botulinum d bacteriophage} PDB: 2zoe_A* 2zs6_A
Probab=5.15 E-value=1.4e+02 Score=12.52 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=12.3
Q ss_pred EEEEECCCCCCCCCEEEEEEEEEC
Q ss_conf 234204410346823689999840
Q gi|254781227|r 20 TEIRADGWMKEDNTARLSVVVSVA 43 (68)
Q Consensus 20 teiradgwmkedntarlsvvvsva 43 (68)
.--|.||||......-++-.+.-+
T Consensus 48 VInkGDGwIlt~~~~liG~~li~n 71 (205)
T 2z5a_A 48 VVNRGDGWILSRQNQNLGGNISNN 71 (205)
T ss_dssp EEECCSCEECTTCTTTTCEEEEET
T ss_pred EEECCCEEEECCCCCCCCCEEECC
T ss_conf 996587058727111002177327
No 4
>2c1m_B Nucleoporin 50 kDa; protein transport/membrane protein, nuclear transport/complex, importin-alpha, nucleoporin NUP50; 2.2A {Mus musculus}
Probab=5.12 E-value=1.5e+02 Score=12.27 Aligned_cols=19 Identities=32% Similarity=0.545 Sum_probs=16.0
Q ss_pred HHCCCEEEEEECCCCCCCC
Q ss_conf 0027502342044103468
Q gi|254781227|r 14 RKRGRTTEIRADGWMKEDN 32 (68)
Q Consensus 14 rkrgrtteiradgwmkedn 32 (68)
-||+-+.+|-.|.|-.||.
T Consensus 2 aKR~A~~~lt~dNwd~ede 20 (46)
T 2c1m_B 2 AKRVAEKELTDRNWDEEDE 20 (46)
T ss_dssp CCCCCSSCCCTTTSSCCCC
T ss_pred CCCCHHHHCCCCCCCCCCC
T ss_conf 6210201204447532356
No 5
>1ney_A TIM, triosephosphate isomerase; yeast, DHAP, dihydroxyacetone phosphate, michaelis complex; HET: FTR 13P; 1.20A {Saccharomyces cerevisiae} SCOP: c.1.1.1 PDB: 1nf0_A* 1i45_A* 1ypi_A 2ypi_A 7tim_A* 3ypi_A*
Probab=3.67 E-value=98 Score=13.28 Aligned_cols=53 Identities=19% Similarity=0.146 Sum_probs=25.2
Q ss_pred HHHHHHHCCCEEEEEECCCCCCCCCEEEEEEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 331010027502342044103468236899998406775689999999999999
Q gi|254781227|r 9 KHFDTRKRGRTTEIRADGWMKEDNTARLSVVVSVAGETTDEEKLREYKEFVISA 62 (68)
Q Consensus 9 khfdtrkrgrtteiradgwmkedntarlsvvvsvagettdeeklreykefvisa 62 (68)
-|-..|+....+...-.-..+.--.+.|.+++.| ||+.++..-.+..+|+...
T Consensus 93 GHSERR~~f~Etd~~i~~K~~~al~~~l~pIlCV-GE~l~~r~~~~~~~~l~~Q 145 (247)
T 1ney_A 93 GHSERRSYFHEDDKFIADKTKFALGQGVGVILCI-GETLEEKKAGKTLDVVERQ 145 (247)
T ss_dssp SCHHHHHTTCCCHHHHHHHHHHHHHTTCEEEEEE-CCCHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHCCCCCHHHHHHHHHHHHCCCEEEEEE-CCCHHHHHCCCCHHHHHHH
T ss_conf 6588886559983888999999997699689994-7509988638837899999
No 6
>2z5h_T TNT, troponin T, fast skeletal muscle isoforms; coiled coil, actin, tropomyosin, cytoskeleton, cardiomyopathy, four-helix bundle; 2.89A {Gallus gallus}
Probab=3.43 E-value=1.9e+02 Score=11.78 Aligned_cols=13 Identities=31% Similarity=0.583 Sum_probs=8.4
Q ss_pred EHHHHHHHHHCCC
Q ss_conf 1033310100275
Q gi|254781227|r 6 LGVKHFDTRKRGR 18 (68)
Q Consensus 6 lgvkhfdtrkrgr 18 (68)
|--.||.+||+--
T Consensus 24 LI~~HFe~Rkkee 36 (55)
T 2z5h_T 24 LIDSHFEARRKEE 36 (55)
T ss_dssp TTTTSSSSSSSTT
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999974009
No 7
>2dii_A TFIIH basal transcription factor complex P62 subunit; BTF2-P62, general transcription factor IIH polypeptide 1, nuclear protein; NMR {Homo sapiens} SCOP: a.240.1.1
Probab=3.39 E-value=2.5e+02 Score=11.13 Aligned_cols=15 Identities=33% Similarity=0.558 Sum_probs=10.7
Q ss_pred CHHHHHHHHHHHHHH
Q ss_conf 689999999999999
Q gi|254781227|r 48 DEEKLREYKEFVISA 62 (68)
Q Consensus 48 deeklreykefvisa 62 (68)
|.+-..-|+++||+.
T Consensus 26 n~~L~ql~kelV~~~ 40 (61)
T 2dii_A 26 DPVLFQLYKDLVVSQ 40 (61)
T ss_dssp CHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHHHCC
T ss_conf 999999999999738
No 8
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=2.97 E-value=2.8e+02 Score=10.89 Aligned_cols=10 Identities=70% Similarity=0.733 Sum_probs=7.5
Q ss_pred HHHHHHHHHC
Q ss_conf 9999988740
Q gi|254781227|r 58 FVISAFAKAI 67 (68)
Q Consensus 58 fvisafakai 67 (68)
=+||||-|.|
T Consensus 37 d~iSA~~KSi 46 (213)
T 3ctd_A 37 DVISAFIKSI 46 (213)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
T ss_conf 9999999987
No 9
>1cqt_I POU domain, class 2, associating factor 1; protein-DNA complex, OCT1, OCA-B, protein-DNA interface, gene regulation/DNA; HET: DNA; 3.20A {Homo sapiens}
Probab=2.96 E-value=2.8e+02 Score=10.89 Aligned_cols=17 Identities=47% Similarity=0.534 Sum_probs=12.5
Q ss_pred EEEEHHHHHHHHHCCCE
Q ss_conf 02110333101002750
Q gi|254781227|r 3 TVKLGVKHFDTRKRGRT 19 (68)
Q Consensus 3 tvklgvkhfdtrkrgrt 19 (68)
.||--||..-.||||..
T Consensus 23 rvkepvkell~rkrg~~ 39 (44)
T 1cqt_I 23 RVKEPVKELLRRKRGHA 39 (44)
T ss_dssp CCSSCHHHHHHHTTC--
T ss_pred CCCHHHHHHHHHHHCCC
T ss_conf 31217999999862675
No 10
>3lo3_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics; 2.38A {Colwellia psychrerythraea}
Probab=2.93 E-value=2.9e+02 Score=10.87 Aligned_cols=29 Identities=34% Similarity=0.422 Sum_probs=0.0
Q ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99998406775689999999999999887
Q gi|254781227|r 37 SVVVSVAGETTDEEKLREYKEFVISAFAK 65 (68)
Q Consensus 37 svvvsvagettdeeklreykefvisafak 65 (68)
++-+-+-...+|.|+..+|.+-+...+++
T Consensus 4 ~~Y~I~~~~i~d~e~~~~Y~~~~~~~~~~ 32 (94)
T 3lo3_A 4 TAYIIVGLTPKDAEKLQQYGARVASTLAK 32 (94)
T ss_dssp CEEEEEEEEECCHHHHHHHHHHHHHHHHT
T ss_pred EEEEEEEEEECCHHHHHHHHHHHHHHHHH
T ss_conf 59999997668999999999999999998
Done!