Query gi|254781227|ref|YP_003065640.1| hypothetical protein CLIBASIA_05670 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 68
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Wed Jun 1 11:44:06 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781227.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2hnga1 d.33.1.2 (A:5-128) Hyp 10.2 11 0.0008 17.0 -2.1 25 9-42 13-37 (124)
2 d1o75a1 b.1.20.1 (A:207-332) T 7.6 72 0.0052 12.7 1.2 25 16-40 68-92 (126)
3 d2cqna1 a.159.2.1 (A:743-806) 5.5 99 0.0072 12.0 2.4 19 44-62 40-58 (64)
4 d2ac0a1 b.2.5.2 (A:96-289) p53 4.3 1.2E+02 0.0089 11.5 1.9 24 20-43 98-126 (194)
5 d2fiua1 d.58.4.16 (A:1-95) Hyp 3.2 1.5E+02 0.011 11.0 3.8 20 45-64 11-30 (95)
6 d1b0na1 a.34.1.1 (A:74-108) Si 3.0 1.6E+02 0.012 10.9 1.6 12 48-59 18-29 (35)
7 d2hmfa1 c.73.1.3 (A:2-303) Asp 2.3 2E+02 0.015 10.4 0.4 16 34-49 32-47 (302)
8 d1pzra_ a.38.2.1 (A:) Erythron 2.2 2.1E+02 0.015 10.3 1.2 13 47-59 28-40 (60)
9 d1icxa_ d.129.3.1 (A:) Plant p 2.1 2.1E+02 0.016 10.3 4.2 33 34-67 113-145 (155)
10 d1vf6a_ a.194.1.1 (A:) Associa 1.9 2.4E+02 0.017 10.1 2.6 24 44-67 16-39 (58)
No 1
>d2hnga1 d.33.1.2 (A:5-128) Hypothetical protein SP1558 {Streptococcus pneumoniae [TaxId: 1313]}
Probab=10.18 E-value=11 Score=16.95 Aligned_cols=25 Identities=32% Similarity=0.527 Sum_probs=13.1
Q ss_pred HHHHHHHCCCEEEEEECCCCCCCCCEEEEEEEEE
Q ss_conf 3310100275023420441034682368999984
Q gi|254781227|r 9 KHFDTRKRGRTTEIRADGWMKEDNTARLSVVVSV 42 (68)
Q Consensus 9 khfdtrkrgrtteiradgwmkedntarlsvvvsv 42 (68)
-|||.| -..|.++.++...-+-|..
T Consensus 13 fHyD~~---------~~e~e~en~~~~t~~~v~~ 37 (124)
T d2hnga1 13 YHFDAR---------NFEWENENGAPETKVDVNF 37 (124)
T ss_dssp EEEEEC---------CHHHHHHHCCCCCEEEEEE
T ss_pred HCHHHC---------CCCCCCCCCCCCEEEEECC
T ss_conf 020004---------7231243698624777322
No 2
>d1o75a1 b.1.20.1 (A:207-332) Tp47 lipoprotein, middle and C-terminal domains {Treponema pallidum [TaxId: 160]}
Probab=7.56 E-value=72 Score=12.74 Aligned_cols=25 Identities=28% Similarity=0.431 Sum_probs=16.8
Q ss_pred CCCEEEEEECCCCCCCCCEEEEEEE
Q ss_conf 2750234204410346823689999
Q gi|254781227|r 16 RGRTTEIRADGWMKEDNTARLSVVV 40 (68)
Q Consensus 16 rgrtteiradgwmkedntarlsvvv 40 (68)
.---|...||.||+-.-|.+++.-.
T Consensus 68 atYGTKfAADNWmqlGlt~s~rC~l 92 (126)
T d1o75a1 68 ASYGTKHSADSWWKTGRVPRISCGI 92 (126)
T ss_dssp EEECCCBTTTEECCSSSSCEEEEEE
T ss_pred HHCCCCHHHHHHHHHCCCCCEEECC
T ss_conf 7426410034588757875436557
No 3
>d2cqna1 a.159.2.1 (A:743-806) Hypa/FBP11 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.49 E-value=99 Score=12.03 Aligned_cols=19 Identities=26% Similarity=0.403 Sum_probs=15.4
Q ss_pred CCCCCHHHHHHHHHHHHHH
Q ss_conf 6775689999999999999
Q gi|254781227|r 44 GETTDEEKLREYKEFVISA 62 (68)
Q Consensus 44 gettdeeklreykefvisa 62 (68)
+-|.+.|..|-||||..+-
T Consensus 40 aitlEsERiRiFkef~~~l 58 (64)
T d2cqna1 40 DITLESERKRIFKDFMHVL 58 (64)
T ss_dssp TCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
T ss_conf 7478999999999999999
No 4
>d2ac0a1 b.2.5.2 (A:96-289) p53 tumor suppressor, DNA-binding domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.25 E-value=1.2e+02 Score=11.55 Aligned_cols=24 Identities=42% Similarity=0.602 Sum_probs=17.6
Q ss_pred EEEEECC-----CCCCCCCEEEEEEEEEC
Q ss_conf 2342044-----10346823689999840
Q gi|254781227|r 20 TEIRADG-----WMKEDNTARLSVVVSVA 43 (68)
Q Consensus 20 teiradg-----wmkedntarlsvvvsva 43 (68)
--||.+| +..++++.|+||+|...
T Consensus 98 H~iR~egn~~a~Y~~d~~t~R~sv~vP~~ 126 (194)
T d2ac0a1 98 HLIRVEGNLRVEYLDDRNTFRHSVVVPYE 126 (194)
T ss_dssp CSEEEESCTTCEEEECTTTCCEEEEEECC
T ss_pred EEEEECCCCCEEEEECCCCCEEEEEEECC
T ss_conf 49997688850787469887899997567
No 5
>d2fiua1 d.58.4.16 (A:1-95) Hypothetical protein Atu0297 {Agrobacterium tumefaciens [TaxId: 358]}
Probab=3.21 E-value=1.5e+02 Score=11.03 Aligned_cols=20 Identities=25% Similarity=0.517 Sum_probs=10.0
Q ss_pred CCCCHHHHHHHHHHHHHHHH
Q ss_conf 77568999999999999988
Q gi|254781227|r 45 ETTDEEKLREYKEFVISAFA 64 (68)
Q Consensus 45 ettdeeklreykefvisafa 64 (68)
+.+|.|++.+|.+-+-..++
T Consensus 11 ~i~d~e~~~~Y~~~~~~~~~ 30 (95)
T d2fiua1 11 DVRDSERYKDYVSTAKPAFE 30 (95)
T ss_dssp EESCHHHHHHHHHHHHHHHH
T ss_pred EECCHHHHHHHHHHHHHHHH
T ss_conf 87899999999999899999
No 6
>d1b0na1 a.34.1.1 (A:74-108) SinR repressor dimerisation domain {Bacillus subtilis [TaxId: 1423]}
Probab=2.98 E-value=1.6e+02 Score=10.89 Aligned_cols=12 Identities=17% Similarity=0.667 Sum_probs=8.8
Q ss_pred CHHHHHHHHHHH
Q ss_conf 689999999999
Q gi|254781227|r 48 DEEKLREYKEFV 59 (68)
Q Consensus 48 deeklreykefv 59 (68)
..+..|||-||-
T Consensus 18 SK~QFrEflef~ 29 (35)
T d1b0na1 18 SKKQFREFLDYQ 29 (35)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
T ss_conf 799999999988
No 7
>d2hmfa1 c.73.1.3 (A:2-303) Aspartokinase {Methanococcus jannaschii [TaxId: 2190]}
Probab=2.29 E-value=2e+02 Score=10.43 Aligned_cols=16 Identities=38% Similarity=0.432 Sum_probs=12.8
Q ss_pred EEEEEEEEECCCCCCH
Q ss_conf 3689999840677568
Q gi|254781227|r 34 ARLSVVVSVAGETTDE 49 (68)
Q Consensus 34 arlsvvvsvagettde 49 (68)
.+.-||||-.|.+||.
T Consensus 32 ~~~vVVVSA~ggvTn~ 47 (302)
T d2hmfa1 32 DDVVVVVSAMSEVTNA 47 (302)
T ss_dssp SCEEEEECCCTTHHHH
T ss_pred CCEEEEEECCCCCHHH
T ss_conf 9889997099997129
No 8
>d1pzra_ a.38.2.1 (A:) Erythronolide synthase {Saccharopolyspora erythraea [TaxId: 1836]}
Probab=2.17 E-value=2.1e+02 Score=10.32 Aligned_cols=13 Identities=46% Similarity=0.580 Sum_probs=8.9
Q ss_pred CCHHHHHHHHHHH
Q ss_conf 5689999999999
Q gi|254781227|r 47 TDEEKLREYKEFV 59 (68)
Q Consensus 47 tdeeklreykefv 59 (68)
..|+|||.|-.-.
T Consensus 28 mtedkLRRYLkRT 40 (60)
T d1pzra_ 28 MTEEKLRRYLKRT 40 (60)
T ss_dssp SHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
T ss_conf 7799999999998
No 9
>d1icxa_ d.129.3.1 (A:) Plant pathogenesis-related protein PR10 {Yellow lupine (Lupinus luteus) [TaxId: 3873]}
Probab=2.10 E-value=2.1e+02 Score=10.27 Aligned_cols=33 Identities=24% Similarity=0.271 Sum_probs=0.0
Q ss_pred EEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 3689999840677568999999999999988740
Q gi|254781227|r 34 ARLSVVVSVAGETTDEEKLREYKEFVISAFAKAI 67 (68)
Q Consensus 34 arlsvvvsvagettdeeklreykefvisafakai 67 (68)
++.++-.-..|+...|+....+||+...-| |+|
T Consensus 113 ~k~t~eYe~~g~~~~e~~~~~~ke~~~~~f-K~i 145 (155)
T d1icxa_ 113 GKINVKFHTKGDVLSETVRDQAKFKGLGLF-KAI 145 (155)
T ss_dssp EEEEEEEEESSSSCCHHHHTTHHHHHHHHH-HHH
T ss_pred EEEEEEEEECCCCCCHHHHHHHHHHHHHHH-HHH
T ss_conf 999999997798788125788999999899-999
No 10
>d1vf6a_ a.194.1.1 (A:) Associated tight junction protein Pals-1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=1.87 E-value=2.4e+02 Score=10.06 Aligned_cols=24 Identities=33% Similarity=0.481 Sum_probs=0.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 677568999999999999988740
Q gi|254781227|r 44 GETTDEEKLREYKEFVISAFAKAI 67 (68)
Q Consensus 44 gettdeeklreykefvisafakai 67 (68)
|+...+|||.-.|+..-|..-.-|
T Consensus 16 GD~s~~ekL~~lk~~LqSPLF~qi 39 (58)
T d1vf6a_ 16 GDTSQNEKLSMFYETLKSPLFNQI 39 (58)
T ss_dssp TCCTTHHHHHHHHHHHHCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHCHHHHHH
T ss_conf 577738789999999868789999
Done!