RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddB 
           21,608 sequences; 5,994,473 total letters

Searching..................................................done

Query= gi|254781227|ref|YP_003065640.1| hypothetical protein
CLIBASIA_05670 [Candidatus Liberibacter asiaticus str. psy62]
         (68 letters)



>gnl|CDD|118668 pfam10140, essB, Predicted membrane protein essB.  Members of this
           family of prokaryotic proteins include the virulence
           factor essB, which is required for the synthesis and
           secretion of EsxA and EsxB, both ESAT-6 like proteins.
          Length = 359

 Score = 26.5 bits (59), Expect = 1.6
 Identities = 10/24 (41%), Positives = 14/24 (58%)

Query: 45  ETTDEEKLREYKEFVISAFAKAIS 68
           E  +E  L+EYK F+I+ F    S
Sbjct: 111 ELDEERFLKEYKAFIIALFDGKYS 134


>gnl|CDD|180976 PRK07431, PRK07431, aspartate kinase; Provisional.
          Length = 587

 Score = 24.9 bits (55), Expect = 5.4
 Identities = 9/15 (60%), Positives = 11/15 (73%)

Query: 35 RLSVVVSVAGETTDE 49
           + VVVS  G+TTDE
Sbjct: 35 DVVVVVSAMGKTTDE 49


>gnl|CDD|181881 PRK09466, metL, bifunctional aspartate kinase II/homoserine
          dehydrogenase II; Provisional.
          Length = 810

 Score = 24.5 bits (54), Expect = 6.2
 Identities = 8/11 (72%), Positives = 10/11 (90%)

Query: 38 VVVSVAGETTD 48
          VVVS AG+TT+
Sbjct: 45 VVVSAAGKTTN 55


>gnl|CDD|180160 PRK05605, PRK05605, long-chain-fatty-acid--CoA ligase; Validated.
          Length = 573

 Score = 24.6 bits (54), Expect = 6.3
 Identities = 13/33 (39%), Positives = 14/33 (42%), Gaps = 5/33 (15%)

Query: 23  RADGWMKEDNTARLSVVVSVAGETTDEEKLREY 55
           R DG   E+  A    VV   G   D E LR Y
Sbjct: 503 REDG--SEEVVA---AVVLEPGAALDPEGLRAY 530


  Database: CddB
    Posted date:  Feb 4, 2011  9:54 PM
  Number of letters in database: 5,994,473
  Number of sequences in database:  21,608
  
Lambda     K      H
   0.315    0.128    0.350 

Gapped
Lambda     K      H
   0.267   0.0681    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21608
Number of Hits to DB: 1,061,569
Number of extensions: 50813
Number of successful extensions: 132
Number of sequences better than 10.0: 1
Number of HSP's gapped: 132
Number of HSP's successfully gapped: 11
Length of query: 68
Length of database: 5,994,473
Length adjustment: 39
Effective length of query: 29
Effective length of database: 5,151,761
Effective search space: 149401069
Effective search space used: 149401069
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.1 bits)