RPS-BLAST 2.2.22 [Sep-27-2009]

Database: mmdb70 
           33,805 sequences; 4,956,049 total letters

Searching..................................................done

Query= gi|254781227|ref|YP_003065640.1| hypothetical protein
CLIBASIA_05670 [Candidatus Liberibacter asiaticus str. psy62]
         (68 letters)



>3kga_A MAP kinase-activated protein kinase 2; small molecule
           inhibitor, 3-aminopyrazole scaffold, scaffold hoping,
           ATP-site kinase inhibitor, induced FIT; HET: LX9; 2.55A
           {Homo sapiens} (A:99-299)
          Length = 201

 Score = 26.3 bits (56), Expect = 1.3
 Identities = 11/56 (19%), Positives = 22/56 (39%)

Query: 10  HFDTRKRGRTTEIRADGWMKEDNTARLSVVVSVAGETTDEEKLREYKEFVISAFAK 65
             +  +R   TE     W+ +      + + +      D+E+  + KE + SA A 
Sbjct: 144 KTEPTQRMTITEFMNHPWIMQSTKVPQTPLHTSRVLKEDKERWEDVKEEMTSALAT 199


>2va1_A Uridylate kinase; UMPK, transferase, pyrimidine
          biosynthesis, amino acid kinase family; 2.50A
          {Ureaplasma parvum} (A:)
          Length = 256

 Score = 26.4 bits (57), Expect = 1.5
 Identities = 3/29 (10%), Positives = 7/29 (24%), Gaps = 2/29 (6%)

Query: 32 NTARLSVVVSVAGETTDEEKLREYKEFVI 60
          ++       S          +   +  VI
Sbjct: 3  SSHHHHHHSSGLVPRGS--HMMRKQRIVI 29


  Database: mmdb70
    Posted date:  Jun 20, 2010  3:12 AM
  Number of letters in database: 4,956,049
  Number of sequences in database:  33,805
  
Lambda     K      H
   0.315    0.128    0.350 

Gapped
Lambda     K      H
   0.267   0.0365    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 33805
Number of Hits to DB: 496,392
Number of extensions: 16902
Number of successful extensions: 69
Number of sequences better than 10.0: 1
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 4
Length of query: 68
Length of database: 4,956,049
Length adjustment: 35
Effective length of query: 33
Effective length of database: 3,772,874
Effective search space: 124504842
Effective search space used: 124504842
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (24.0 bits)