RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254781227|ref|YP_003065640.1| hypothetical protein
CLIBASIA_05670 [Candidatus Liberibacter asiaticus str. psy62]
         (68 letters)



>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 28.0 bits (62), Expect = 0.58
 Identities = 5/22 (22%), Positives = 6/22 (27%)

Query: 46  TTDEEKLREYKEFVISAFAKAI 67
           T D   LR     +       I
Sbjct: 462 TFDGSDLRVLSGSISERIVDCI 483


>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex,
           ATP-binding, cytoplasm, nucleotide-binding, nucleus,
           phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo
           sapiens} PDB: 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A*
           3fpm_A* 2pzy_A* 3kc3_A* 2jbo_A* 2jbp_A*
          Length = 336

 Score = 26.5 bits (58), Expect = 1.3
 Identities = 11/56 (19%), Positives = 21/56 (37%)

Query: 10  HFDTRKRGRTTEIRADGWMKEDNTARLSVVVSVAGETTDEEKLREYKEFVISAFAK 65
             D  +R   T+     W+ +      + + +      D++   E KE + SA A 
Sbjct: 273 KTDPTERLTITQFMNHPWINQSMVVPQTPLHTARVLQEDKDHWDEVKEEMTSALAT 328


>3bbd_A Ribosome biogenesis protein NEP1-like; methyltransferase,
           S-adenosyl- methionine, S-adenosyl-homocysteine, rRNA
           processing; HET: MSE SAH; 2.15A {Methanocaldococcus
           jannaschii} SCOP: c.116.1.6 PDB: 3bbe_A 3bbh_A*
          Length = 205

 Score = 25.5 bits (56), Expect = 2.8
 Identities = 9/37 (24%), Positives = 18/37 (48%)

Query: 29  KEDNTARLSVVVSVAGETTDEEKLREYKEFVISAFAK 65
             +  A+   +++  G+ T  + L+EY  F+I  F  
Sbjct: 130 LNEINAKKIAIMTKTGKLTHPKLLKEYDTFIIGGFPY 166


>1wqa_A Phospho-sugar mutase; alpha-beta protein, unphosphorylated form,
           enzyme-metal complex, isomerase; 2.00A {Pyrococcus
           horikoshii}
          Length = 455

 Score = 24.3 bits (51), Expect = 6.3
 Identities = 9/24 (37%), Positives = 12/24 (50%)

Query: 45  ETTDEEKLREYKEFVISAFAKAIS 68
           E   +EK +EY    I    KA+S
Sbjct: 432 EAKSKEKAQEYLNLGIELLEKALS 455


>3kga_A MAP kinase-activated protein kinase 2; small molecule inhibitor,
           3-aminopyrazole scaffold, scaffold hoping, ATP-site
           kinase inhibitor, induced FIT; HET: LX9; 2.55A {Homo
           sapiens}
          Length = 299

 Score = 23.8 bits (51), Expect = 9.0
 Identities = 11/55 (20%), Positives = 22/55 (40%)

Query: 10  HFDTRKRGRTTEIRADGWMKEDNTARLSVVVSVAGETTDEEKLREYKEFVISAFA 64
             +  +R   TE     W+ +      + + +      D+E+  + KE + SA A
Sbjct: 242 KTEPTQRMTITEFMNHPWIMQSTKVPQTPLHTSRVLKEDKERWEDVKEEMTSALA 296


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.315    0.128    0.350 

Gapped
Lambda     K      H
   0.267   0.0547    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 560,947
Number of extensions: 19852
Number of successful extensions: 113
Number of sequences better than 10.0: 1
Number of HSP's gapped: 113
Number of HSP's successfully gapped: 8
Length of query: 68
Length of database: 5,693,230
Length adjustment: 38
Effective length of query: 30
Effective length of database: 4,771,958
Effective search space: 143158740
Effective search space used: 143158740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.5 bits)