RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254781227|ref|YP_003065640.1| hypothetical protein
CLIBASIA_05670 [Candidatus Liberibacter asiaticus str. psy62]
         (68 letters)



>d3bbda1 c.116.1.6 (A:2-205) Ribosome biogenesis protein NEP1
           {Methanococcus jannaschii [TaxId: 2190]}
          Length = 204

 Score = 24.4 bits (53), Expect = 2.9
 Identities = 8/23 (34%), Positives = 12/23 (52%)

Query: 43  AGETTDEEKLREYKEFVISAFAK 65
            G+ T  + L+EY  F+I  F  
Sbjct: 143 TGKLTHPKLLKEYDTFIIGGFPY 165


>d2hnga1 d.33.1.2 (A:5-128) Hypothetical protein SP1558
          {Streptococcus pneumoniae [TaxId: 1313]}
          Length = 124

 Score = 23.9 bits (52), Expect = 3.3
 Identities = 10/51 (19%), Positives = 15/51 (29%), Gaps = 9/51 (17%)

Query: 10 HFDTRKRGRTTEIRADGWMKEDNTARLSVVVSVAGETTDEEKLREYKEFVI 60
          HFD R            W  E+      V V+      D+E        ++
Sbjct: 14 HFDARN---------FEWENENGAPETKVDVNFQLLQHDQENQVTSLIVIL 55


>d2ozaa1 d.144.1.7 (A:51-385) MAP kinase activated protein kinase 2,
           mapkap2 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 335

 Score = 22.7 bits (48), Expect = 8.8
 Identities = 11/56 (19%), Positives = 22/56 (39%)

Query: 10  HFDTRKRGRTTEIRADGWMKEDNTARLSVVVSVAGETTDEEKLREYKEFVISAFAK 65
             +  +R   TE     W+ +      + + +      D+E+  + KE + SA A 
Sbjct: 257 KTEPTQRMTITEFMNHPWIMQSTKVPQTPLHTSRVLKEDKERWEDVKEEMTSALAT 312


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.315    0.128    0.350 

Gapped
Lambda     K      H
   0.267   0.0642    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 242,142
Number of extensions: 8468
Number of successful extensions: 47
Number of sequences better than 10.0: 1
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 6
Length of query: 68
Length of database: 2,407,596
Length adjustment: 37
Effective length of query: 31
Effective length of database: 1,899,586
Effective search space: 58887166
Effective search space used: 58887166
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.1 bits)