BLASTP 2.2.22 [Sep-27-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= gi|254781227|ref|YP_003065640.1| hypothetical protein
CLIBASIA_05670 [Candidatus Liberibacter asiaticus str. psy62]
(68 letters)
Database: las_proteome
1233 sequences; 328,796 total letters
Searching...................................................done
>gi|254781227|ref|YP_003065640.1| hypothetical protein CLIBASIA_05670 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 68
Score = 138 bits (347), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 68/68 (100%), Positives = 68/68 (100%)
Query: 1 MNTVKLGVKHFDTRKRGRTTEIRADGWMKEDNTARLSVVVSVAGETTDEEKLREYKEFVI 60
MNTVKLGVKHFDTRKRGRTTEIRADGWMKEDNTARLSVVVSVAGETTDEEKLREYKEFVI
Sbjct: 1 MNTVKLGVKHFDTRKRGRTTEIRADGWMKEDNTARLSVVVSVAGETTDEEKLREYKEFVI 60
Query: 61 SAFAKAIS 68
SAFAKAIS
Sbjct: 61 SAFAKAIS 68
>gi|254780961|ref|YP_003065374.1| hypothetical protein CLIBASIA_04310 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 200
Score = 23.1 bits (48), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 41 SVAGETTDEEKLREYKEFVISAFAKAI 67
S++ + D+E++R K +V+S +KAI
Sbjct: 45 SMSSDLLDQEEVRTLKIYVVSTGSKAI 71
>gi|254781171|ref|YP_003065584.1| hypothetical protein CLIBASIA_05390 [Candidatus Liberibacter
asiaticus str. psy62]
Length = 420
Score = 22.3 bits (46), Expect = 1.6, Method: Composition-based stats.
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 37 SVVVSVAGETTDEEKLREYKEFVISAFAK 65
S+++ + TTD E EF+++ F +
Sbjct: 22 SILIGIFSGTTDYVIFNETAEFIVNVFVR 50
>gi|254781020|ref|YP_003065433.1| isopentenyl pyrophosphate isomerase [Candidatus Liberibacter
asiaticus str. psy62]
Length = 337
Score = 20.8 bits (42), Expect = 5.0, Method: Composition-based stats.
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 4 VKLGVKHFDTRKRGRTTEIRAD 25
+K G+++FD RG T+ R +
Sbjct: 204 LKSGIRYFDIAGRGGTSWSRIE 225
>gi|254780460|ref|YP_003064873.1| 3-hydroxydecanoyl-(acyl carrier protein) dehydratase [Candidatus
Liberibacter asiaticus str. psy62]
Length = 172
Score = 20.4 bits (41), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 16 RGRTTEIRADGWMK 29
RGR ADGW+K
Sbjct: 136 RGRVVLGAADGWVK 149
>gi|254780662|ref|YP_003065075.1| NAD-glutamate dehydrogenase [Candidatus Liberibacter asiaticus str.
psy62]
Length = 1576
Score = 20.0 bits (40), Expect = 8.0, Method: Composition-based stats.
Identities = 6/9 (66%), Positives = 8/9 (88%)
Query: 6 LGVKHFDTR 14
+G+KHFD R
Sbjct: 298 IGIKHFDER 306
Database: las_proteome
Posted date: Jun 5, 2011 6:30 PM
Number of letters in database: 328,796
Number of sequences in database: 1233
Lambda K H
0.315 0.128 0.350
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,143
Number of Sequences: 1233
Number of extensions: 1064
Number of successful extensions: 6
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 68
length of database: 328,796
effective HSP length: 39
effective length of query: 29
effective length of database: 280,709
effective search space: 8140561
effective search space used: 8140561
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.1 bits)
S2: 31 (16.5 bits)