Query         gi|254781228|ref|YP_003065641.1| hypothetical protein CLIBASIA_05675 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 87
No_of_seqs    1 out of 3
Neff          1.0 
Searched_HMMs 39220
Date          Mon May 30 07:01:15 2011
Command       /home/congqian_1/programs/hhpred/hhsearch -i 254781228.hhm -d /home/congqian_1/database/cdd/Cdd.hhm 

 No Hit                             Prob E-value P-value  Score    SS Cols Query HMM  Template HMM
  1 cd00419 Ferrochelatase_C Ferro  47.2      21 0.00054   18.2   3.1   51    2-52     70-122 (135)
  2 TIGR02299 HpaE 5-carboxymethyl  44.9     9.8 0.00025   20.1   1.0   16    4-20    146-161 (494)
  3 PRK11824 polynucleotide phosph  39.7      29 0.00073   17.5   2.8   68    2-73    140-231 (694)
  4 TIGR03591 polynuc_phos polyrib  37.3      32 0.00082   17.3   2.7   62    2-67    132-216 (684)
  5 PTZ00042 stevor; Provisional    28.2      45  0.0011   16.4   2.2   30   56-85     65-94  (304)
  6 pfam11251 DUF3050 Protein of u  27.5      46  0.0012   16.4   2.2   43   31-77    174-216 (232)
  7 PRK00035 hemH ferrochelatase;   26.4      65  0.0017   15.6   3.2   51    2-52    237-289 (325)
  8 pfam09966 DUF2200 Uncharacteri  24.7      67  0.0017   15.5   2.6   16   54-69     90-105 (111)
  9 TIGR02116 toxin_Txe_YoeB addic  22.5      44  0.0011   16.5   1.3   21    2-22     31-60  (82)
 10 PRK12435 ferrochelatase; Provi  21.0      83  0.0021   14.9   2.7   49    3-53    225-278 (316)

No 1  
>cd00419 Ferrochelatase_C Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus.
Probab=47.21  E-value=21  Score=18.23  Aligned_cols=51  Identities=20%  Similarity=0.385  Sum_probs=34.8

Q ss_pred             CCCCCCCCCHHHHHHHHCCC--CCEEEEEECCCHHHHHHHHHHHHHCCCCHHH
Q ss_conf             98888884045577644075--5268887324313688887643201121689
Q gi|254781228|r    2 TNTPWNGPKFDVLTRRIADQ--DSVLILRLGLGTVSEDILRHIELEAKDSANE   52 (87)
Q Consensus         2 tntpwngpkfdvltrriadq--dsvlilrlglgtvsedilrhieleakdsane   52 (87)
                      ...||-+|-.+-.-++.+++  .++++.-.|.-.-.-..|--|+.|+++.+-+
T Consensus        70 g~~~Wl~P~~~~~l~~l~~~G~~~v~v~p~gF~sD~lETl~eld~e~~~~~~~  122 (135)
T cd00419          70 GPGEWLEPSTDDALEELAKEGVKNVVVVPIGFVSDHLETLYELDIEYRELAEE  122 (135)
T ss_pred             CCCCCCCCCHHHHHHHHHHCCCCCEEEECCEEECCCHHHHHHHHHHHHHHHHH
T ss_conf             88887899879999999866997199989853036514488878999999998


No 2  
>TIGR02299 HpaE 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; InterPro: IPR011985    This entry represents the dehydrogenase responsible for the conversion of 5-carboxymethyl-2-hydroxymuconate semialdehyde to 5-carboxymethyl-2-hydroxymuconate (a tricarboxylic acid). This is the step in the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate following the oxidative opening of the aromatic ring ..
Probab=44.92  E-value=9.8  Score=20.10  Aligned_cols=16  Identities=56%  Similarity=1.024  Sum_probs=12.2

Q ss_pred             CCCCCCCHHHHHHHHCC
Q ss_conf             88888404557764407
Q gi|254781228|r    4 TPWNGPKFDVLTRRIAD   20 (87)
Q Consensus         4 tpwngpkfdvltrriad   20 (87)
                      ||||-| |=.-|-+||-
T Consensus       146 TPWN~P-fML~TWKiAP  161 (494)
T TIGR02299       146 TPWNAP-FMLSTWKIAP  161 (494)
T ss_pred             CCCCCH-HHHHHHHHHH
T ss_conf             888751-2432667877


No 3  
>PRK11824 polynucleotide phosphorylase/polyadenylase; Provisional
Probab=39.67  E-value=29  Score=17.52  Aligned_cols=68  Identities=29%  Similarity=0.509  Sum_probs=43.4

Q ss_pred             CCCCCCCCCHHHHHHHHC-----------------------CCCCEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf             988888840455776440-----------------------755268887324313688887643201121689999999
Q gi|254781228|r    2 TNTPWNGPKFDVLTRRIA-----------------------DQDSVLILRLGLGTVSEDILRHIELEAKDSANELLKPLR   58 (87)
Q Consensus         2 tntpwngpkfdvltrria-----------------------dqdsvlilrlglgtvsedilrhieleakdsanellkplr   58 (87)
                      ..-|||||---|---+|.                       ..|+|+..--+---+||+.+    ++|-.-|.+-.+++-
T Consensus       140 SdIPF~GPVaaVRVG~idGe~ViNPT~eqle~SdLDLvVAGT~daI~MVE~~A~EvsEe~m----leAI~fahe~iq~ii  215 (694)
T PRK11824        140 SGIPFNGPIAAVRVGYIDGEFVLNPTVEELEESDLDLVVAGTKDAVLMVESEANELSEEVM----LEAIEFGHEAIQELI  215 (694)
T ss_pred             CCCCCCCCEEEEEEEEECCEEEECCCHHHHHHCCEEEEEECCCCEEEEEECCCCCCCHHHH----HHHHHHHHHHHHHHH
T ss_conf             0899788748999998899899899856774283789998247818999724776788999----999999999999999


Q ss_pred             HHHHHHHHCH-HHHHH
Q ss_conf             9999996120-33221
Q gi|254781228|r   59 KIIDELVKGE-RNKWR   73 (87)
Q Consensus        59 kiidelvkge-rnkwr   73 (87)
                      +.+.||++-- +.||-
T Consensus       216 ~~q~el~~~~Gk~K~e  231 (694)
T PRK11824        216 DAQEELAAEAGKPKWE  231 (694)
T ss_pred             HHHHHHHHHHCCCCCC
T ss_conf             9999999997899764


No 4  
>TIGR03591 polynuc_phos polyribonucleotide nucleotidyltransferase. Members of this protein family are polyribonucleotide nucleotidyltransferase, also called polynucleotide phosphorylase. Some members have been shown also to have additional functions as guanosine pentaphosphate synthetase and as poly(A) polymerase (see model TIGR02696 for an exception clade, within this family).
Probab=37.33  E-value=32  Score=17.25  Aligned_cols=62  Identities=29%  Similarity=0.488  Sum_probs=39.8

Q ss_pred             CCCCCCCCCHHHHHHHHC-----------------------CCCCEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf             988888840455776440-----------------------755268887324313688887643201121689999999
Q gi|254781228|r    2 TNTPWNGPKFDVLTRRIA-----------------------DQDSVLILRLGLGTVSEDILRHIELEAKDSANELLKPLR   58 (87)
Q Consensus         2 tntpwngpkfdvltrria-----------------------dqdsvlilrlglgtvsedilrhieleakdsanellkplr   58 (87)
                      ..-|||||---|---+|-                       ..|+++..--+---+||+.+    ++|-.-|.+-.+++-
T Consensus       132 SdIPf~GPVaaVRVG~idGe~ViNPT~~qle~SdLDLvVAGT~daIvMVE~~A~EvsEe~m----leAI~~ahe~iq~ii  207 (684)
T TIGR03591       132 SGIPFNGPIAAVRVGYIDGQYVLNPTVDELEKSDLDLVVAGTKDAVLMVESEAKELSEEVM----LGAIEFGHEEIQPVI  207 (684)
T ss_pred             CCCCCCCCEEEEEEEEECCEEEECCCHHHHHHCCEEEEEECCCCEEEEEECCCCCCCHHHH----HHHHHHHHHHHHHHH
T ss_conf             0898678738999999899899899866785474339998148818999756776788999----999999999999999


Q ss_pred             HHHHHHHHC
Q ss_conf             999999612
Q gi|254781228|r   59 KIIDELVKG   67 (87)
Q Consensus        59 kiidelvkg   67 (87)
                      +.+.||++-
T Consensus       208 ~~q~el~~~  216 (684)
T TIGR03591       208 EAIEELAEE  216 (684)
T ss_pred             HHHHHHHHH
T ss_conf             999999999


No 5  
>PTZ00042 stevor; Provisional
Probab=28.17  E-value=45  Score=16.43  Aligned_cols=30  Identities=30%  Similarity=0.540  Sum_probs=24.2

Q ss_pred             HHHHHHHHHHHCHHHHHHCCCCCCHHHHHH
Q ss_conf             999999999612033221046872368765
Q gi|254781228|r   56 PLRKIIDELVKGERNKWRQSDNPDDDVCEV   85 (87)
Q Consensus        56 plrkiidelvkgernkwrqsdnpdddvcev   85 (87)
                      .|++|||.+-...-.|+.|+.+|-...-||
T Consensus        65 ELKEIIDKlNeEAIKKYQqthdpy~QLkev   94 (304)
T PTZ00042         65 ELKEIIDKMNEEAIKKYQQTHDPYKQLKEV   94 (304)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
T ss_conf             899999875799998774458879999999


No 6  
>pfam11251 DUF3050 Protein of unknown function (DUF3050). This bacterial family of proteins has no known function.
Probab=27.50  E-value=46  Score=16.38  Aligned_cols=43  Identities=26%  Similarity=0.468  Sum_probs=25.7

Q ss_pred             CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHHHHHHCCCC
Q ss_conf             43136888876432011216899999999999996120332210468
Q gi|254781228|r   31 LGTVSEDILRHIELEAKDSANELLKPLRKIIDELVKGERNKWRQSDN   77 (87)
Q Consensus        31 lgtvsedilrhieleakdsanellkplrkiidelvkgernkwrqsdn   77 (87)
                      +.+..--.-||||+....-.-    --++++.+|..+...||.+..+
T Consensus       174 ~~~f~yYL~RHIElDgd~HGP----lA~kml~~LCg~D~~kw~EA~~  216 (232)
T pfam11251       174 LPTFRYYLERHIELDGDEHGP----LALQMLAELCGDDPQKWQEVEQ  216 (232)
T ss_pred             HHHHHHHHHHHHCCCCCCCCH----HHHHHHHHHHCCCHHHHHHHHH
T ss_conf             289999999983267765658----9999999997889999999999


No 7  
>PRK00035 hemH ferrochelatase; Reviewed
Probab=26.40  E-value=65  Score=15.55  Aligned_cols=51  Identities=22%  Similarity=0.423  Sum_probs=32.3

Q ss_pred             CCCCCCCCCHHHHHHHHCCCC--CEEEEEECCCHHHHHHHHHHHHHCCCCHHH
Q ss_conf             988888840455776440755--268887324313688887643201121689
Q gi|254781228|r    2 TNTPWNGPKFDVLTRRIADQD--SVLILRLGLGTVSEDILRHIELEAKDSANE   52 (87)
Q Consensus         2 tntpwngpkfdvltrriadqd--svlilrlglgtvsedilrhieleakdsane   52 (87)
                      ...||-+|-.+-.-+.++.+.  .|++.-.|.-+-.-..|--|+.|+++.+.+
T Consensus       237 Gp~~WL~P~t~~~l~~l~~~G~k~V~v~p~gFvsD~lETl~Eidie~~e~~~~  289 (325)
T PRK00035        237 GPEPWLEPYTDDTLEELAEKGVKKIVVVPPGFVSDHLETLEEIDIEYREIAEE  289 (325)
T ss_pred             CCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf             89886887589999998857997599989820453446599988999999998


No 8  
>pfam09966 DUF2200 Uncharacterized protein conserved in bacteria (DUF2200). This domain, found in various hypothetical bacterial proteins, has no known function.
Probab=24.74  E-value=67  Score=15.47  Aligned_cols=16  Identities=44%  Similarity=0.860  Sum_probs=12.2

Q ss_pred             HHHHHHHHHHHHHCHH
Q ss_conf             9999999999961203
Q gi|254781228|r   54 LKPLRKIIDELVKGER   69 (87)
Q Consensus        54 lkplrkiidelvkger   69 (87)
                      ..-|-|.||||.||..
T Consensus        90 iRyLDKLVDELAKGk~  105 (111)
T pfam09966        90 IRYLDKLVDELAKGKK  105 (111)
T ss_pred             HHHHHHHHHHHHCCCC
T ss_conf             9999999999976882


No 9  
>TIGR02116 toxin_Txe_YoeB addiction module toxin, Txe/YoeB family; InterPro: IPR009614   The Axe-Txe pair in Enterococcus faecium and the homologous YefM-YoeB pair in Escherichia coli have been shown to act as an antitoxin-toxin pair. This family describes the toxin component. Nearly every example found is next to an identifiable antitoxin, as indicated by match to  ..
Probab=22.46  E-value=44  Score=16.46  Aligned_cols=21  Identities=33%  Similarity=0.578  Sum_probs=11.6

Q ss_pred             CCCCCCCC-CH--------HHHHHHHCCCC
Q ss_conf             98888884-04--------55776440755
Q gi|254781228|r    2 TNTPWNGP-KF--------DVLTRRIADQD   22 (87)
Q Consensus         2 tntpwngp-kf--------dvltrriadqd   22 (87)
                      .++||.|. ||        +.-.|||.+|.
T Consensus        31 ~rdPf~g~gkpEpLk~~l~G~wSRRI~~eH   60 (82)
T TIGR02116        31 KRDPFKGIGKPEPLKGDLSGYWSRRITDEH   60 (82)
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             488960586789988788984303227565


No 10 
>PRK12435 ferrochelatase; Provisional
Probab=21.01  E-value=83  Score=14.95  Aligned_cols=49  Identities=33%  Similarity=0.598  Sum_probs=28.9

Q ss_pred             CCCCCCCCHHHHHHHHCCC---CCEEEEEECCCHHHH--HHHHHHHHHCCCCHHHH
Q ss_conf             8888884045577644075---526888732431368--88876432011216899
Q gi|254781228|r    3 NTPWNGPKFDVLTRRIADQ---DSVLILRLGLGTVSE--DILRHIELEAKDSANEL   53 (87)
Q Consensus         3 ntpwngpkfdvltrriadq---dsvlilrlglgtvse--dilrhieleakdsanel   53 (87)
                      ..||-+|-.+-....++.+   ..|++.-  .|-||+  ..|--|..|+|..|.|+
T Consensus       225 p~~WL~P~t~d~l~~l~~~~~~k~vvv~P--i~FvsDhlETL~EldiE~ke~a~e~  278 (316)
T PRK12435        225 PDPWIGPDVQDLTRDLYEEHGYESFIYCP--VGFVAEHLEVLYDNDYECKVVTDEL  278 (316)
T ss_pred             CCCCCCCCHHHHHHHHHHHCCCEEEEEEC--CCHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf             99999987999999999827975899989--7430330788999999999999975


Done!