Query gi|254781228|ref|YP_003065641.1| hypothetical protein CLIBASIA_05675 [Candidatus Liberibacter asiaticus str. psy62] Match_columns 87 No_of_seqs 1 out of 3 Neff 1.0 Searched_HMMs 39220 Date Mon May 30 07:01:15 2011 Command /home/congqian_1/programs/hhpred/hhsearch -i 254781228.hhm -d /home/congqian_1/database/cdd/Cdd.hhm No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM 1 cd00419 Ferrochelatase_C Ferro 47.2 21 0.00054 18.2 3.1 51 2-52 70-122 (135) 2 TIGR02299 HpaE 5-carboxymethyl 44.9 9.8 0.00025 20.1 1.0 16 4-20 146-161 (494) 3 PRK11824 polynucleotide phosph 39.7 29 0.00073 17.5 2.8 68 2-73 140-231 (694) 4 TIGR03591 polynuc_phos polyrib 37.3 32 0.00082 17.3 2.7 62 2-67 132-216 (684) 5 PTZ00042 stevor; Provisional 28.2 45 0.0011 16.4 2.2 30 56-85 65-94 (304) 6 pfam11251 DUF3050 Protein of u 27.5 46 0.0012 16.4 2.2 43 31-77 174-216 (232) 7 PRK00035 hemH ferrochelatase; 26.4 65 0.0017 15.6 3.2 51 2-52 237-289 (325) 8 pfam09966 DUF2200 Uncharacteri 24.7 67 0.0017 15.5 2.6 16 54-69 90-105 (111) 9 TIGR02116 toxin_Txe_YoeB addic 22.5 44 0.0011 16.5 1.3 21 2-22 31-60 (82) 10 PRK12435 ferrochelatase; Provi 21.0 83 0.0021 14.9 2.7 49 3-53 225-278 (316) No 1 >cd00419 Ferrochelatase_C Ferrochelatase, C-terminal domain: Ferrochelatase (protoheme ferrolyase or HemH) is the terminal enzyme of the heme biosynthetic pathway. It catalyzes the insertion of ferrous iron into the protoporphyrin IX ring yielding protoheme. This enzyme is ubiquitous in nature and widely distributed in bacteria and eukaryotes. Recently, some archaeal members have been identified. The oligomeric state of these enzymes varies depending on the presence of a dimerization motif at the C-terminus. Probab=47.21 E-value=21 Score=18.23 Aligned_cols=51 Identities=20% Similarity=0.385 Sum_probs=34.8 Q ss_pred CCCCCCCCCHHHHHHHHCCC--CCEEEEEECCCHHHHHHHHHHHHHCCCCHHH Q ss_conf 98888884045577644075--5268887324313688887643201121689 Q gi|254781228|r 2 TNTPWNGPKFDVLTRRIADQ--DSVLILRLGLGTVSEDILRHIELEAKDSANE 52 (87) Q Consensus 2 tntpwngpkfdvltrriadq--dsvlilrlglgtvsedilrhieleakdsane 52 (87) ...||-+|-.+-.-++.+++ .++++.-.|.-.-.-..|--|+.|+++.+-+ T Consensus 70 g~~~Wl~P~~~~~l~~l~~~G~~~v~v~p~gF~sD~lETl~eld~e~~~~~~~ 122 (135) T cd00419 70 GPGEWLEPSTDDALEELAKEGVKNVVVVPIGFVSDHLETLYELDIEYRELAEE 122 (135) T ss_pred CCCCCCCCCHHHHHHHHHHCCCCCEEEECCEEECCCHHHHHHHHHHHHHHHHH T ss_conf 88887899879999999866997199989853036514488878999999998 No 2 >TIGR02299 HpaE 5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase; InterPro: IPR011985 This entry represents the dehydrogenase responsible for the conversion of 5-carboxymethyl-2-hydroxymuconate semialdehyde to 5-carboxymethyl-2-hydroxymuconate (a tricarboxylic acid). This is the step in the degradation of 4-hydroxyphenylacetic acid via homoprotocatechuate following the oxidative opening of the aromatic ring .. Probab=44.92 E-value=9.8 Score=20.10 Aligned_cols=16 Identities=56% Similarity=1.024 Sum_probs=12.2 Q ss_pred CCCCCCCHHHHHHHHCC Q ss_conf 88888404557764407 Q gi|254781228|r 4 TPWNGPKFDVLTRRIAD 20 (87) Q Consensus 4 tpwngpkfdvltrriad 20 (87) ||||-| |=.-|-+||- T Consensus 146 TPWN~P-fML~TWKiAP 161 (494) T TIGR02299 146 TPWNAP-FMLSTWKIAP 161 (494) T ss_pred CCCCCH-HHHHHHHHHH T ss_conf 888751-2432667877 No 3 >PRK11824 polynucleotide phosphorylase/polyadenylase; Provisional Probab=39.67 E-value=29 Score=17.52 Aligned_cols=68 Identities=29% Similarity=0.509 Sum_probs=43.4 Q ss_pred CCCCCCCCCHHHHHHHHC-----------------------CCCCEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHHHHH Q ss_conf 988888840455776440-----------------------755268887324313688887643201121689999999 Q gi|254781228|r 2 TNTPWNGPKFDVLTRRIA-----------------------DQDSVLILRLGLGTVSEDILRHIELEAKDSANELLKPLR 58 (87) Q Consensus 2 tntpwngpkfdvltrria-----------------------dqdsvlilrlglgtvsedilrhieleakdsanellkplr 58 (87) ..-|||||---|---+|. ..|+|+..--+---+||+.+ ++|-.-|.+-.+++- T Consensus 140 SdIPF~GPVaaVRVG~idGe~ViNPT~eqle~SdLDLvVAGT~daI~MVE~~A~EvsEe~m----leAI~fahe~iq~ii 215 (694) T PRK11824 140 SGIPFNGPIAAVRVGYIDGEFVLNPTVEELEESDLDLVVAGTKDAVLMVESEANELSEEVM----LEAIEFGHEAIQELI 215 (694) T ss_pred CCCCCCCCEEEEEEEEECCEEEECCCHHHHHHCCEEEEEECCCCEEEEEECCCCCCCHHHH----HHHHHHHHHHHHHHH T ss_conf 0899788748999998899899899856774283789998247818999724776788999----999999999999999 Q ss_pred HHHHHHHHCH-HHHHH Q ss_conf 9999996120-33221 Q gi|254781228|r 59 KIIDELVKGE-RNKWR 73 (87) Q Consensus 59 kiidelvkge-rnkwr 73 (87) +.+.||++-- +.||- T Consensus 216 ~~q~el~~~~Gk~K~e 231 (694) T PRK11824 216 DAQEELAAEAGKPKWE 231 (694) T ss_pred HHHHHHHHHHCCCCCC T ss_conf 9999999997899764 No 4 >TIGR03591 polynuc_phos polyribonucleotide nucleotidyltransferase. Members of this protein family are polyribonucleotide nucleotidyltransferase, also called polynucleotide phosphorylase. Some members have been shown also to have additional functions as guanosine pentaphosphate synthetase and as poly(A) polymerase (see model TIGR02696 for an exception clade, within this family). Probab=37.33 E-value=32 Score=17.25 Aligned_cols=62 Identities=29% Similarity=0.488 Sum_probs=39.8 Q ss_pred CCCCCCCCCHHHHHHHHC-----------------------CCCCEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHHHHH Q ss_conf 988888840455776440-----------------------755268887324313688887643201121689999999 Q gi|254781228|r 2 TNTPWNGPKFDVLTRRIA-----------------------DQDSVLILRLGLGTVSEDILRHIELEAKDSANELLKPLR 58 (87) Q Consensus 2 tntpwngpkfdvltrria-----------------------dqdsvlilrlglgtvsedilrhieleakdsanellkplr 58 (87) ..-|||||---|---+|- ..|+++..--+---+||+.+ ++|-.-|.+-.+++- T Consensus 132 SdIPf~GPVaaVRVG~idGe~ViNPT~~qle~SdLDLvVAGT~daIvMVE~~A~EvsEe~m----leAI~~ahe~iq~ii 207 (684) T TIGR03591 132 SGIPFNGPIAAVRVGYIDGQYVLNPTVDELEKSDLDLVVAGTKDAVLMVESEAKELSEEVM----LGAIEFGHEEIQPVI 207 (684) T ss_pred CCCCCCCCEEEEEEEEECCEEEECCCHHHHHHCCEEEEEECCCCEEEEEECCCCCCCHHHH----HHHHHHHHHHHHHHH T ss_conf 0898678738999999899899899866785474339998148818999756776788999----999999999999999 Q ss_pred HHHHHHHHC Q ss_conf 999999612 Q gi|254781228|r 59 KIIDELVKG 67 (87) Q Consensus 59 kiidelvkg 67 (87) +.+.||++- T Consensus 208 ~~q~el~~~ 216 (684) T TIGR03591 208 EAIEELAEE 216 (684) T ss_pred HHHHHHHHH T ss_conf 999999999 No 5 >PTZ00042 stevor; Provisional Probab=28.17 E-value=45 Score=16.43 Aligned_cols=30 Identities=30% Similarity=0.540 Sum_probs=24.2 Q ss_pred HHHHHHHHHHHCHHHHHHCCCCCCHHHHHH Q ss_conf 999999999612033221046872368765 Q gi|254781228|r 56 PLRKIIDELVKGERNKWRQSDNPDDDVCEV 85 (87) Q Consensus 56 plrkiidelvkgernkwrqsdnpdddvcev 85 (87) .|++|||.+-...-.|+.|+.+|-...-|| T Consensus 65 ELKEIIDKlNeEAIKKYQqthdpy~QLkev 94 (304) T PTZ00042 65 ELKEIIDKMNEEAIKKYQQTHDPYKQLKEV 94 (304) T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHH T ss_conf 899999875799998774458879999999 No 6 >pfam11251 DUF3050 Protein of unknown function (DUF3050). This bacterial family of proteins has no known function. Probab=27.50 E-value=46 Score=16.38 Aligned_cols=43 Identities=26% Similarity=0.468 Sum_probs=25.7 Q ss_pred CCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHHHHHHCCCC Q ss_conf 43136888876432011216899999999999996120332210468 Q gi|254781228|r 31 LGTVSEDILRHIELEAKDSANELLKPLRKIIDELVKGERNKWRQSDN 77 (87) Q Consensus 31 lgtvsedilrhieleakdsanellkplrkiidelvkgernkwrqsdn 77 (87) +.+..--.-||||+....-.- --++++.+|..+...||.+..+ T Consensus 174 ~~~f~yYL~RHIElDgd~HGP----lA~kml~~LCg~D~~kw~EA~~ 216 (232) T pfam11251 174 LPTFRYYLERHIELDGDEHGP----LALQMLAELCGDDPQKWQEVEQ 216 (232) T ss_pred HHHHHHHHHHHHCCCCCCCCH----HHHHHHHHHHCCCHHHHHHHHH T ss_conf 289999999983267765658----9999999997889999999999 No 7 >PRK00035 hemH ferrochelatase; Reviewed Probab=26.40 E-value=65 Score=15.55 Aligned_cols=51 Identities=22% Similarity=0.423 Sum_probs=32.3 Q ss_pred CCCCCCCCCHHHHHHHHCCCC--CEEEEEECCCHHHHHHHHHHHHHCCCCHHH Q ss_conf 988888840455776440755--268887324313688887643201121689 Q gi|254781228|r 2 TNTPWNGPKFDVLTRRIADQD--SVLILRLGLGTVSEDILRHIELEAKDSANE 52 (87) Q Consensus 2 tntpwngpkfdvltrriadqd--svlilrlglgtvsedilrhieleakdsane 52 (87) ...||-+|-.+-.-+.++.+. .|++.-.|.-+-.-..|--|+.|+++.+.+ T Consensus 237 Gp~~WL~P~t~~~l~~l~~~G~k~V~v~p~gFvsD~lETl~Eidie~~e~~~~ 289 (325) T PRK00035 237 GPEPWLEPYTDDTLEELAEKGVKKIVVVPPGFVSDHLETLEEIDIEYREIAEE 289 (325) T ss_pred CCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHH T ss_conf 89886887589999998857997599989820453446599988999999998 No 8 >pfam09966 DUF2200 Uncharacterized protein conserved in bacteria (DUF2200). This domain, found in various hypothetical bacterial proteins, has no known function. Probab=24.74 E-value=67 Score=15.47 Aligned_cols=16 Identities=44% Similarity=0.860 Sum_probs=12.2 Q ss_pred HHHHHHHHHHHHHCHH Q ss_conf 9999999999961203 Q gi|254781228|r 54 LKPLRKIIDELVKGER 69 (87) Q Consensus 54 lkplrkiidelvkger 69 (87) ..-|-|.||||.||.. T Consensus 90 iRyLDKLVDELAKGk~ 105 (111) T pfam09966 90 IRYLDKLVDELAKGKK 105 (111) T ss_pred HHHHHHHHHHHHCCCC T ss_conf 9999999999976882 No 9 >TIGR02116 toxin_Txe_YoeB addiction module toxin, Txe/YoeB family; InterPro: IPR009614 The Axe-Txe pair in Enterococcus faecium and the homologous YefM-YoeB pair in Escherichia coli have been shown to act as an antitoxin-toxin pair. This family describes the toxin component. Nearly every example found is next to an identifiable antitoxin, as indicated by match to.. Probab=22.46 E-value=44 Score=16.46 Aligned_cols=21 Identities=33% Similarity=0.578 Sum_probs=11.6 Q ss_pred CCCCCCCC-CH--------HHHHHHHCCCC Q ss_conf 98888884-04--------55776440755 Q gi|254781228|r 2 TNTPWNGP-KF--------DVLTRRIADQD 22 (87) Q Consensus 2 tntpwngp-kf--------dvltrriadqd 22 (87) .++||.|. || +.-.|||.+|. T Consensus 31 ~rdPf~g~gkpEpLk~~l~G~wSRRI~~eH 60 (82) T TIGR02116 31 KRDPFKGIGKPEPLKGDLSGYWSRRITDEH 60 (82) T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC T ss_conf 488960586789988788984303227565 No 10 >PRK12435 ferrochelatase; Provisional Probab=21.01 E-value=83 Score=14.95 Aligned_cols=49 Identities=33% Similarity=0.598 Sum_probs=28.9 Q ss_pred CCCCCCCCHHHHHHHHCCC---CCEEEEEECCCHHHH--HHHHHHHHHCCCCHHHH Q ss_conf 8888884045577644075---526888732431368--88876432011216899 Q gi|254781228|r 3 NTPWNGPKFDVLTRRIADQ---DSVLILRLGLGTVSE--DILRHIELEAKDSANEL 53 (87) Q Consensus 3 ntpwngpkfdvltrriadq---dsvlilrlglgtvse--dilrhieleakdsanel 53 (87) ..||-+|-.+-....++.+ ..|++.- .|-||+ ..|--|..|+|..|.|+ T Consensus 225 p~~WL~P~t~d~l~~l~~~~~~k~vvv~P--i~FvsDhlETL~EldiE~ke~a~e~ 278 (316) T PRK12435 225 PDPWIGPDVQDLTRDLYEEHGYESFIYCP--VGFVAEHLEVLYDNDYECKVVTDEL 278 (316) T ss_pred CCCCCCCCHHHHHHHHHHHCCCEEEEEEC--CCHHHHHHHHHHHHHHHHHHHHHHC T ss_conf 99999987999999999827975899989--7430330788999999999999975 Done!