Query gi|254781228|ref|YP_003065641.1| hypothetical protein CLIBASIA_05675 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 87
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 33803
Date Wed Jun 1 23:09:49 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781228.hhm -d /home/congqian_1/database/mmdb/mmdb70.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 >3c9p_A Uncharacterized protei 23.6 63 0.0019 15.2 2.9 18 52-69 94-111 (123)
2 >1tt5_A APPBP1, amyloid protei 20.9 72 0.0021 14.9 3.2 78 6-87 2-82 (85)
3 >3htk_A Structural maintenance 18.5 79 0.0023 14.7 2.2 26 43-68 28-53 (60)
4 >1te2_A Putative phosphatase; 18.3 43 0.0013 16.2 0.8 18 4-21 47-64 (75)
5 >2pyq_A Uncharacterized protei 17.1 76 0.0022 14.8 1.9 24 51-74 74-97 (114)
6 >2h1v_A Ferrochelatase; rossma 14.7 1E+02 0.003 14.1 2.6 50 3-52 79-131 (142)
7 >3hcn_A Ferrochelatase, mitoch 13.0 97 0.0029 14.2 1.5 46 2-49 78-127 (143)
8 >1ulv_A Glucodextranase; GH fa 12.6 75 0.0022 14.9 0.8 13 2-14 57-69 (247)
9 >2nn6_C Exosome complex exonuc 11.4 1.2E+02 0.0035 13.7 1.6 40 22-61 47-86 (92)
10 >2de6_D Ferredoxin component o 11.0 62 0.0018 15.3 -0.0 15 4-18 16-30 (37)
No 1
>>3c9p_A Uncharacterized protein SP1917; structural genomics, PSI- 2, protein structure initiative, midwest center for structural genomics; 1.96A {Streptococcus pneumoniae TIGR4} (A:)
Probab=23.61 E-value=63 Score=15.25 Aligned_cols=18 Identities=33% Similarity=0.586 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHHHHHCHH
Q ss_conf 999999999999961203
Q gi|254781228|r 52 ELLKPLRKIIDELVKGER 69 (87)
Q Consensus 52 ellkplrkiidelvkger 69 (87)
.-..-|-|.||||.||..
T Consensus 94 qeiRyLDKLvDELAKGK~ 111 (123)
T 3c9p_A 94 QEIRRLDKLVDWLAKGKT 111 (123)
T ss_dssp HHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHCCCC
T ss_conf 999999999999976781
No 2
>>1tt5_A APPBP1, amyloid protein-binding protein 1; cell cycle, ligase; 2.60A {Homo sapiens} (A:400-484)
Probab=20.93 E-value=72 Score=14.94 Aligned_cols=78 Identities=18% Similarity=0.218 Sum_probs=47.5
Q ss_pred CCCCCHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHCHHHHHHCC-CCCCHHH
Q ss_conf 88840455776440755268887324313688887643201--12168999999999999961203322104-6872368
Q gi|254781228|r 6 WNGPKFDVLTRRIADQDSVLILRLGLGTVSEDILRHIELEA--KDSANELLKPLRKIIDELVKGERNKWRQS-DNPDDDV 82 (87)
Q Consensus 6 wngpkfdvltrriadqdsvlilrlglgtvsedilrhielea--kdsanellkplrkiidelvkgernkwrqs-dnpdddv 82 (87)
-|.|+.+-+..-..+.||..++-+-|-.|-.=.-.|-..-. .+...+=.--|++|+.+++ +.|.-+ --+||-+
T Consensus 2 l~s~~~~ei~~~le~pds~~~~YilLRAvdrF~~~y~ryPG~~d~~ve~Di~~LK~~~~~ll----~e~gl~~~i~dd~i 77 (85)
T 1tt5_A 2 LDTINKDEIISSMDNPDNEIVLYLMLRAVDRFHKQQGRYPGVSNYQVEEDIGKLKSCLTGFL----QEYGLSVMVKDDYV 77 (85)
T ss_dssp TTTSCHHHHHHHTTSTTSTHHHHHHHHHHHHHHHHHSSCTTCSTTTHHHHHHHHHHHHHHHH----HHHTCCCCCCHHHH
T ss_pred CCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH----HHCCCCCCCHHHHH
T ss_conf 44223023434430666469999999999999998489999867126779999999999986----54167654379999
Q ss_pred HHHHC
Q ss_conf 76509
Q gi|254781228|r 83 CEVCQ 87 (87)
Q Consensus 83 cevcq 87 (87)
+|+|.
T Consensus 78 ~E~CR 82 (85)
T 1tt5_A 78 HEFCR 82 (85)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 99998
No 3
>>3htk_A Structural maintenance of chromosomes protein 5; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} (A:)
Probab=18.53 E-value=79 Score=14.71 Aligned_cols=26 Identities=38% Similarity=0.567 Sum_probs=21.9
Q ss_pred HHHCCCCHHHHHHHHHHHHHHHHHCH
Q ss_conf 32011216899999999999996120
Q gi|254781228|r 43 ELEAKDSANELLKPLRKIIDELVKGE 68 (87)
Q Consensus 43 eleakdsanellkplrkiidelvkge 68 (87)
-|.||...||....|..|-||.+|..
T Consensus 28 flkakekineifeklntirdevikkk 53 (60)
T 3htk_A 28 FLKAKEKINEIFEKLNTIRDEVIKKK 53 (60)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 99889999999999968899998830
No 4
>>1te2_A Putative phosphatase; structural genomics, phosphates, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Escherichia coli O157} (A:21-95)
Probab=18.35 E-value=43 Score=16.20 Aligned_cols=18 Identities=33% Similarity=0.853 Sum_probs=9.3
Q ss_pred CCCCCCCHHHHHHHHCCC
Q ss_conf 888884045577644075
Q gi|254781228|r 4 TPWNGPKFDVLTRRIADQ 21 (87)
Q Consensus 4 tpwngpkfdvltrriadq 21 (87)
-||+||....++.||-++
T Consensus 47 ~pw~~~~~~ev~~~Ii~r 64 (75)
T 1te2_A 47 QPWNGPSRQEVVERVIAR 64 (75)
T ss_dssp SCCSSSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHH
T ss_conf 135420237899999999
No 5
>>2pyq_A Uncharacterized protein; YP_512017.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.50A {Jannaschia SP} (A:)
Probab=17.13 E-value=76 Score=14.82 Aligned_cols=24 Identities=29% Similarity=0.559 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHCHHHHHHC
Q ss_conf 899999999999996120332210
Q gi|254781228|r 51 NELLKPLRKIIDELVKGERNKWRQ 74 (87)
Q Consensus 51 nellkplrkiidelvkgernkwrq 74 (87)
.++.....+.++..-+++|||.|-
T Consensus 74 ~~l~~aI~~V~e~~g~s~r~K~R~ 97 (114)
T 2pyq_A 74 ESLXGGIQSVIETYGRSERNKYRA 97 (114)
T ss_dssp HHHHHHHHHHHHHHCTTCSCCBHH
T ss_pred HHHHHHHHHHHHHHCCCCCCCCEE
T ss_conf 879999999999970355775303
No 6
>>2h1v_A Ferrochelatase; rossman fold, PI-helix, lyase; 1.20A {Bacillus subtilis} PDB: 2hk6_A 1c1h_A* 1ld3_A 1n0i_A 1ak1_A 1doz_A 2q2n_A* 2h1w_A 2ac2_A 2q3j_A* 2ac4_A 2q2o_A* 1c9e_A* 2c8j_A (A:149-290)
Probab=14.72 E-value=1e+02 Score=14.09 Aligned_cols=50 Identities=22% Similarity=0.446 Sum_probs=31.5
Q ss_pred CCCCCCCCHHHHHHHH-CC--CCCEEEEEECCCHHHHHHHHHHHHHCCCCHHH
Q ss_conf 8888884045577644-07--55268887324313688887643201121689
Q gi|254781228|r 3 NTPWNGPKFDVLTRRI-AD--QDSVLILRLGLGTVSEDILRHIELEAKDSANE 52 (87)
Q Consensus 3 ntpwngpkfdvltrri-ad--qdsvlilrlglgtvsedilrhieleakdsane 52 (87)
..||-+|-.+-.-++. +. ..+|++.-.|.-+-.-..|--|..|+++-|.+
T Consensus 79 ~~~WL~P~t~~~l~~L~a~~G~k~v~vvpigFvsDhlETl~eldie~~e~a~~ 131 (142)
T 2h1v_A 79 PDPWLGPDVQDLTRDLFEQKGYQAFVYVPVGFVADHLEVLYDNDYECKVVTDD 131 (142)
T ss_dssp SSCBSSCBHHHHHHHHHHHHCCSEEEEECTTCCSSCHHHHTTTTTHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 75301432677899888725973899989870433354499988999999997
No 7
>>3hcn_A Ferrochelatase, mitochondrial; metal selectivity, 2Fe-2S, disease mutation, heme biosynthesis, iron, iron-sulfur, lyase, membrane, metal-binding; HET: CHD HEM GOL; 1.60A {Homo sapiens} PDB: 2qd3_A* 2qd5_A* 2qd4_A* 3hco_A* 3hcr_A* 2qd1_A* 2hre_A* 3hcp_A* 2qd2_A* 2hrc_A* 1hrk_A* 2pnj_A* 2po5_A* 2po7_A* (A:165-307)
Probab=13.02 E-value=97 Score=14.22 Aligned_cols=46 Identities=20% Similarity=0.517 Sum_probs=29.7
Q ss_pred CCCCCCCCCHHHHHHHHCCCC--CEEEEEECCCHHHH--HHHHHHHHHCCCC
Q ss_conf 988888840455776440755--26888732431368--8887643201121
Q gi|254781228|r 2 TNTPWNGPKFDVLTRRIADQD--SVLILRLGLGTVSE--DILRHIELEAKDS 49 (87)
Q Consensus 2 tntpwngpkfdvltrriadqd--svlilrlglgtvse--dilrhieleakds 49 (87)
...||-||-.+-..++.+.+. .|++.-. |-+|+ ..|--|..|+++.
T Consensus 78 g~~~Wl~P~~~~~l~~l~~~G~k~v~v~p~--gF~sD~lETlyeidie~~e~ 127 (143)
T 3hcn_A 78 GPMPWLGPQTDESIKGLCERGRKNILLVPI--AFTSDHIETLYELDIEYSQV 127 (143)
T ss_dssp CSSCBSSSBHHHHHHHHHHTTCCEEEEECT--TCCSCCCCCHHHHCHHHHHH
T ss_pred CCCCCCCCCHHHHHHHHHHCCCCEEEEECC--CCCCCCHHHHHHHHHHHHHH
T ss_conf 986666873899999999749972999797--31356346799878999999
No 8
>>1ulv_A Glucodextranase; GH family 15, (alpha-alpha)6-barrel, SLH domain, hydrolase; HET: ACR; 2.42A {Arthrobacter globiformis} (A:774-1020)
Probab=12.60 E-value=75 Score=14.85 Aligned_cols=13 Identities=23% Similarity=0.695 Sum_probs=9.2
Q ss_pred CCCCCCCCCHHHH
Q ss_conf 9888888404557
Q gi|254781228|r 2 TNTPWNGPKFDVL 14 (87)
Q Consensus 2 tntpwngpkfdvl 14 (87)
.+.|||+|-|+.-
T Consensus 57 ~~nPW~~pGFS~q 69 (247)
T 1ulv_A 57 VTNPWGGQAISHQ 69 (247)
T ss_dssp CCCTTCCSSCSSE
T ss_pred CCCCCCCCCCCCE
T ss_conf 6799988731014
No 9
>>2nn6_C Exosome complex exonuclease RRP43; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} (C:187-278)
Probab=11.45 E-value=1.2e+02 Score=13.75 Aligned_cols=40 Identities=15% Similarity=0.139 Sum_probs=24.5
Q ss_pred CCEEEEEECCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Q ss_conf 5268887324313688887643201121689999999999
Q gi|254781228|r 22 DSVLILRLGLGTVSEDILRHIELEAKDSANELLKPLRKII 61 (87)
Q Consensus 22 dsvlilrlglgtvsedilrhieleakdsanellkplrkii 61 (87)
+.+.+...|-+.++++.+...---|+..+.++.+.+++.+
T Consensus 47 ~~~~l~~~g~~~~~~~~~~~~l~~A~~~~~~i~~~~~~~l 86 (92)
T 2nn6_C 47 KLCCLHKPGGSGLTGAKLQDCMSRAVTRHKEVKKLMDEVI 86 (92)
T ss_dssp CEEEEEESCCSCCCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 8999994689887999999999999999999999999998
No 10
>>2de6_D Ferredoxin component of carbazole; electron transfer complex, rieske non-heme iron oxygenase system, terminal oxygenase; 1.80A {Pseudomonas resinovorans} PDB: 2de5_D 1vck_A 2de7_D* (D:50-86)
Probab=10.98 E-value=62 Score=15.32 Aligned_cols=15 Identities=33% Similarity=0.552 Sum_probs=11.8
Q ss_pred CCCCCCCHHHHHHHH
Q ss_conf 888884045577644
Q gi|254781228|r 4 TPWNGPKFDVLTRRI 18 (87)
Q Consensus 4 tpwngpkfdvltrri 18 (87)
-||.|-+||+-|-..
T Consensus 16 CP~H~a~Fdi~tG~~ 30 (37)
T 2de6_D 16 CPFHGGAFNVCTGMP 30 (37)
T ss_dssp CTTTCCEEETTTCCE
T ss_pred CCCCCCEEECCCCEE
T ss_conf 545688884899519
Done!