Query gi|254781228|ref|YP_003065641.1| hypothetical protein CLIBASIA_05675 [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 87
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 13730
Date Wed Jun 1 11:45:15 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254781228.hhm -d /home/congqian_1/database/scop/scop70_1_75.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3pmga4 d.129.2.1 (A:421-561) 13.5 26 0.0019 15.2 0.7 51 18-68 72-129 (141)
2 d2pyqa1 a.279.1.1 (A:1-113) Un 10.2 58 0.0042 13.3 2.1 30 44-74 67-96 (113)
3 d1im8a_ c.66.1.14 (A:) Hypothe 7.9 73 0.0053 12.8 2.8 59 20-78 39-102 (225)
4 d1dl5a2 d.197.1.1 (A:214-317) 7.0 66 0.0048 13.0 0.8 24 11-34 31-54 (104)
5 d1o8ra_ d.234.1.1 (A:) Proguan 6.6 85 0.0062 12.4 1.5 26 46-87 62-87 (94)
6 d1jnsa_ d.26.1.1 (A:) Parvulin 6.6 55 0.004 13.4 0.2 21 39-59 6-26 (92)
7 d2q4oa1 c.129.1.1 (A:8-190) Hy 6.4 87 0.0063 12.3 2.6 66 18-83 100-179 (183)
8 d1eq3a_ d.26.1.1 (A:) Parvulin 4.3 86 0.0062 12.4 0.0 20 39-58 5-24 (96)
9 d1tafb_ a.22.1.3 (B:) TAF(II)6 3.9 1.3E+02 0.0095 11.3 3.3 45 29-80 19-63 (70)
10 d1dgsa3 d.142.2.2 (A:1-314) Ad 3.7 47 0.0034 13.8 -1.7 33 9-42 115-147 (314)
No 1
>d3pmga4 d.129.2.1 (A:421-561) Phosphoglucomutase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=13.46 E-value=26 Score=15.20 Aligned_cols=51 Identities=29% Similarity=0.371 Sum_probs=32.1
Q ss_pred HCCCCCEEEEEE-CCCHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHHHHHCH
Q ss_conf 407552688873-2431368888764320112------16899999999999996120
Q gi|254781228|r 18 IADQDSVLILRL-GLGTVSEDILRHIELEAKD------SANELLKPLRKIIDELVKGE 68 (87)
Q Consensus 18 iadqdsvlilrl-glgtvsedilrhieleakd------sanellkplrkiidelvkge 68 (87)
+-+..|-+|+|| |-|+...-|---+|--.+| .+.+.|+||-.+..++.+=+
T Consensus 72 ~F~dGsRiVfRLSGTGs~GATiRlY~E~ye~d~~~~~~~~q~aL~~li~~Al~~s~i~ 129 (141)
T d3pmga4 72 IFADGSRIIFRLSGTGSAGATIRLYIDSYEKDNAKINQDPQVMLAPLISIALKVSQLQ 129 (141)
T ss_dssp EETTSCEEEEEEEECSSSCEEEEEEEEEEECCTTTTTSCHHHHHHHHHHHHHHHHTHH
T ss_pred EECCCCEEEEEECCCCCCCCEEEEEEEECCCCHHHCCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 9728978999945788998379999874058967707588999999999999997788
No 2
>d2pyqa1 a.279.1.1 (A:1-113) Uncharacterized protein Jann4075 {Jannaschia sp. ccs1 [TaxId: 290400]}
Probab=10.18 E-value=58 Score=13.28 Aligned_cols=30 Identities=33% Similarity=0.573 Sum_probs=22.2
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHCHHHHHHC
Q ss_conf 2011216899999999999996120332210
Q gi|254781228|r 44 LEAKDSANELLKPLRKIIDELVKGERNKWRQ 74 (87)
Q Consensus 44 leakdsanellkplrkiidelvkgernkwrq 74 (87)
|--.|+ .+|-....+.+...-+++|||.|-
T Consensus 67 LGl~D~-~~ld~aI~~V~e~~g~s~r~K~R~ 96 (113)
T d2pyqa1 67 LGLADS-ESLMGGIQSVIETYGRSERNKYRA 96 (113)
T ss_dssp SCCCSS-HHHHHHHHHHHHHHCTTCSCCBHH
T ss_pred HCCCCC-HHHHHHHHHHHHHHCCCCCCCCEE
T ss_conf 089974-879999999999970355775302
No 3
>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}
Probab=7.90 E-value=73 Score=12.75 Aligned_cols=59 Identities=14% Similarity=0.113 Sum_probs=37.2
Q ss_pred CCCCEEEEEECCCHHHHHHHHH-----HHHHCCCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCC
Q ss_conf 7552688873243136888876-----4320112168999999999999961203322104687
Q gi|254781228|r 20 DQDSVLILRLGLGTVSEDILRH-----IELEAKDSANELLKPLRKIIDELVKGERNKWRQSDNP 78 (87)
Q Consensus 20 dqdsvlilrlglgtvsedilrh-----ieleakdsanellkplrkiidelvkgernkwrqsdnp 78 (87)
....||-+--|-|.++.-++++ .++-+-|...+.++--++.+.+.-...+-.+..+|..
T Consensus 39 ~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~ 102 (225)
T d1im8a_ 39 ADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIR 102 (225)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTT
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCCCCEEEECCCHHHHHHHHHHHHHHCCCCHHHHCCCHHH
T ss_conf 9987999334124679999875047887469737988999999987576402300110100010
No 4
>d1dl5a2 d.197.1.1 (A:214-317) Protein-L-isoaspartyl O-methyltransferase, C-terminal domain {Thermotoga maritima [TaxId: 2336]}
Probab=6.98 E-value=66 Score=12.99 Aligned_cols=24 Identities=33% Similarity=0.466 Sum_probs=18.1
Q ss_pred HHHHHHHHCCCCCEEEEEECCCHH
Q ss_conf 455776440755268887324313
Q gi|254781228|r 11 FDVLTRRIADQDSVLILRLGLGTV 34 (87)
Q Consensus 11 fdvltrriadqdsvlilrlglgtv 34 (87)
.|.||||.+.-|......---|+|
T Consensus 31 vdlltrrl~e~~g~fyyagp~g~v 54 (104)
T d1dl5a2 31 VDLLTRRLTEIDGTFYYAGPNGVV 54 (104)
T ss_dssp HHHHHSCEEEETTEEEEECSSEEE
T ss_pred HHHHHHHHHHHCCEEEEECCCCEE
T ss_conf 999999998725779962787424
No 5
>d1o8ra_ d.234.1.1 (A:) Proguanylin {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.57 E-value=85 Score=12.38 Aligned_cols=26 Identities=35% Similarity=0.772 Sum_probs=18.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCHHHHHHHC
Q ss_conf 112168999999999999961203322104687236876509
Q gi|254781228|r 46 AKDSANELLKPLRKIIDELVKGERNKWRQSDNPDDDVCEVCQ 87 (87)
Q Consensus 46 akdsanellkplrkiidelvkgernkwrqsdnpdddvcevcq 87 (87)
....|.+.+.-|+-|+. |.|.||.|-
T Consensus 62 ~~~~A~~if~rL~~ia~----------------d~d~CEICa 87 (94)
T d1o8ra_ 62 KEPNAQEILQRLEEIAE----------------DPGTCEICA 87 (94)
T ss_dssp TSTTHHHHHHHHHHHHT----------------CCTTTTTTS
T ss_pred CCCCHHHHHHHHHHHCC----------------CCCCCCCCC
T ss_conf 69587999999998527----------------987420131
No 6
>d1jnsa_ d.26.1.1 (A:) Parvulin 10 (rotamase C) {Escherichia coli [TaxId: 562]}
Probab=6.56 E-value=55 Score=13.42 Aligned_cols=21 Identities=24% Similarity=0.379 Sum_probs=14.6
Q ss_pred HHHHHHHCCCCHHHHHHHHHH
Q ss_conf 876432011216899999999
Q gi|254781228|r 39 LRHIELEAKDSANELLKPLRK 59 (87)
Q Consensus 39 lrhieleakdsanellkplrk 59 (87)
.|||-++.+..|.++++-++.
T Consensus 6 a~HIlv~~~~~A~~i~~~l~~ 26 (92)
T d1jnsa_ 6 ALHILVKEEKLALDLLEQIKN 26 (92)
T ss_dssp EEEEEESSHHHHHHHHHHHHH
T ss_pred EEEEEECCHHHHHHHHHHHHC
T ss_conf 999776899999999999887
No 7
>d2q4oa1 c.129.1.1 (A:8-190) Hypothetical protein At2g37210/T2N18.3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=6.39 E-value=87 Score=12.32 Aligned_cols=66 Identities=21% Similarity=0.284 Sum_probs=40.3
Q ss_pred HCCCCCEEEEEECCCHHHHH--HHHHHHHHCCCC------HHHHHHHHHHHHHHHHHC------HHHHHHCCCCCCHHHH
Q ss_conf 40755268887324313688--887643201121------689999999999999612------0332210468723687
Q gi|254781228|r 18 IADQDSVLILRLGLGTVSED--ILRHIELEAKDS------ANELLKPLRKIIDELVKG------ERNKWRQSDNPDDDVC 83 (87)
Q Consensus 18 iadqdsvlilrlglgtvsed--ilrhieleakds------anellkplrkiidelvkg------ernkwrqsdnpdddvc 83 (87)
+..-|.+.++.=|.||..|= ++-.+.+...+. .+..-.||.+.++.+++- .++.+.-.|+|++-+-
T Consensus 100 ~~~sdafIvlPGG~GTLdEl~e~lt~~ql~~~~kpiiiln~~gfw~~l~~~l~~~~~~g~i~~~~~~~~~~~d~~~e~~~ 179 (183)
T d2q4oa1 100 AKHSDAFIALPGGYGTLEELLEVITWAQLGIHDKPVGLLNVDGYYNSLLSFIDKAVEEGFISPTAREIIVSAPTAKELVK 179 (183)
T ss_dssp HHTCSEEEECSCCHHHHHHHHHHHHHHHHTSCCCCEEEECGGGTTHHHHHHHHHHHHTTSSCHHHHTTEEEESSHHHHHH
T ss_pred HHHCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCCHHHCCCEEECCCHHHHHH
T ss_conf 87474588807730149999999999983677888288606860899999999999879999688292899099999999
No 8
>d1eq3a_ d.26.1.1 (A:) Parvulin {Human (Homo sapiens), hpar14 [TaxId: 9606]}
Probab=4.30 E-value=86 Score=12.35 Aligned_cols=20 Identities=30% Similarity=0.429 Sum_probs=12.4
Q ss_pred HHHHHHHCCCCHHHHHHHHH
Q ss_conf 87643201121689999999
Q gi|254781228|r 39 LRHIELEAKDSANELLKPLR 58 (87)
Q Consensus 39 lrhieleakdsanellkplr 58 (87)
.|||-++.+..|+++++-++
T Consensus 5 vrHIl~~~~~~a~~i~~~i~ 24 (96)
T d1eq3a_ 5 VRHILCEKHGKIMEAMEKLK 24 (96)
T ss_dssp EEEEEECCCSTHHHHHHHHT
T ss_pred EEEEEECCHHHHHHHHHHHH
T ss_conf 99999878899999999988
No 9
>d1tafb_ a.22.1.3 (B:) TAF(II)62 {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=3.88 E-value=1.3e+02 Score=11.34 Aligned_cols=45 Identities=24% Similarity=0.425 Sum_probs=0.0
Q ss_pred ECCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCH
Q ss_conf 3243136888876432011216899999999999996120332210468723
Q gi|254781228|r 29 LGLGTVSEDILRHIELEAKDSANELLKPLRKIIDELVKGERNKWRQSDNPDD 80 (87)
Q Consensus 29 lglgtvsedilrhieleakdsanellkplrkiidelvkgernkwrqsdnpdd 80 (87)
+|.+..+++..+.+ |.+.---+|.||.|.+|--|+--|+-=.++|
T Consensus 19 ~Gi~~l~de~a~~L-------A~DveYRl~eiiQeA~KFMrhskR~~Ltt~D 63 (70)
T d1tafb_ 19 IGVGSLSDDAAKEL-------AEDVSIKLKRIVQDAAKFMNHAKRQKLSVRD 63 (70)
T ss_dssp TTCCCBCHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHTTCSSBCHHH
T ss_pred CCCCCCCHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHH
T ss_conf 59888899999999-------9999999999999999999975657586998
No 10
>d1dgsa3 d.142.2.2 (A:1-314) Adenylation domain of NAD+-dependent DNA ligase {Thermus filiformis [TaxId: 276]}
Probab=3.74 E-value=47 Score=13.78 Aligned_cols=33 Identities=24% Similarity=0.332 Sum_probs=0.0
Q ss_pred CCHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHH
Q ss_conf 4045577644075526888732431368888764
Q gi|254781228|r 9 PKFDVLTRRIADQDSVLILRLGLGTVSEDILRHI 42 (87)
Q Consensus 9 pkfdvltrriadqdsvlilrlglgtvsedilrhi 42 (87)
||+|-+.- +..++.++...-|=|++.|||..++
T Consensus 115 ~KlDG~Si-L~y~~Gv~~~TRGdG~~GeDiT~~~ 147 (314)
T d1dgsa3 115 HKVDGLSV-LYYEEGVWSTGSGDGEVGEEVTQNL 147 (314)
T ss_dssp ECCSCEEE-EEEETTEEEEEECSSSEEEBCTGGG
T ss_pred HCCCCCEE-EEECCCEEEEEECCCCEEHHHHHHH
T ss_conf 03475308-9963987678624886102267667
Done!