RPS-BLAST 2.2.22 [Sep-27-2009]

Database: CddA 
           21,609 sequences; 6,263,737 total letters

Searching..................................................done

Query= gi|254781228|ref|YP_003065641.1| hypothetical protein
CLIBASIA_05675 [Candidatus Liberibacter asiaticus str. psy62]
         (87 letters)



>gnl|CDD|37292 KOG2081, KOG2081, KOG2081, Nuclear transport regulator
           [Intracellular trafficking, secretion, and vesicular
           transport].
          Length = 559

 Score = 25.6 bits (56), Expect = 2.9
 Identities = 14/81 (17%), Positives = 29/81 (35%)

Query: 6   WNGPKFDVLTRRIADQDSVLILRLGLGTVSEDILRHIELEAKDSANELLKPLRKIIDELV 65
           W  P F+++        +V IL   L  + E+          +  +E +  L   + +++
Sbjct: 96  WVNPIFELVRALSNKHPAVPILLEILKVLPEETRDIRLTVGANRRHEFIDELAAQVSKVL 155

Query: 66  KGERNKWRQSDNPDDDVCEVC 86
               +   +SD    D  E  
Sbjct: 156 VFLSDLLERSDLKSSDDLEQV 176


>gnl|CDD|34476 COG4867, COG4867, Uncharacterized protein with a von Willebrand
           factor type A (vWA) domain [General function prediction
           only].
          Length = 652

 Score = 25.0 bits (54), Expect = 5.1
 Identities = 12/46 (26%), Positives = 26/46 (56%)

Query: 40  RHIELEAKDSANELLKPLRKIIDELVKGERNKWRQSDNPDDDVCEV 85
           R  EL  +++ +  L+ ++K++DE V  ER +  ++ + D    E+
Sbjct: 74  RRRELLRRNNLDGTLQEIKKLLDEAVLAERKELARALDDDARFAEL 119


>gnl|CDD|30391 COG0042, COG0042, tRNA-dihydrouridine synthase [Translation,
           ribosomal structure and biogenesis].
          Length = 323

 Score = 24.2 bits (52), Expect = 9.5
 Identities = 17/62 (27%), Positives = 30/62 (48%), Gaps = 2/62 (3%)

Query: 26  ILRLGLGTVSEDILRHIELEAKDSANELLKPLRKIIDELVKGER--NKWRQSDNPDDDVC 83
           +L   L  V + +  H+EL  +    + L+ LRK +   +KG     + R++ N  +D  
Sbjct: 249 LLPPTLAEVLDILREHLELLLEYYGKKGLRRLRKHLGYYLKGLPGARELRRALNKAEDGA 308

Query: 84  EV 85
           EV
Sbjct: 309 EV 310


  Database: CddA
    Posted date:  Feb 4, 2011  9:38 PM
  Number of letters in database: 6,263,737
  Number of sequences in database:  21,609
  
Lambda     K      H
   0.317    0.137    0.409 

Gapped
Lambda     K      H
   0.267   0.0728    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 21609
Number of Hits to DB: 1,071,615
Number of extensions: 45702
Number of successful extensions: 143
Number of sequences better than 10.0: 1
Number of HSP's gapped: 143
Number of HSP's successfully gapped: 11
Length of query: 87
Length of database: 6,263,737
Length adjustment: 56
Effective length of query: 31
Effective length of database: 5,053,633
Effective search space: 156662623
Effective search space used: 156662623
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.4 bits)