RPS-BLAST 2.2.22 [Sep-27-2009]

Database: pdb70 
           24,244 sequences; 5,693,230 total letters

Searching..................................................done

Query= gi|254781228|ref|YP_003065641.1| hypothetical protein
CLIBASIA_05675 [Candidatus Liberibacter asiaticus str. psy62]
         (87 letters)



>3dd6_A Ribonuclease PH; exoribonuclease, tRNA maturation, RNAse PH.,
           transferase; 1.70A {Bacillus anthracis}
          Length = 255

 Score = 26.3 bits (57), Expect = 1.9
 Identities = 6/35 (17%), Positives = 15/35 (42%)

Query: 32  GTVSEDILRHIELEAKDSANELLKPLRKIIDELVK 66
            T S   L  +   A+    +L+   ++ + ++V 
Sbjct: 218 ATFSRAQLNELLDAAEQGIFQLIDIQKEALGDIVS 252


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
           acyl-carrier-protein, beta-ketoacyl reductase,
           beta-ketoacyl synthase, dehydratase; 4.00A
           {Saccharomyces cerevisiae}
          Length = 2006

 Score = 26.1 bits (57), Expect = 2.2
 Identities = 11/77 (14%), Positives = 26/77 (33%), Gaps = 16/77 (20%)

Query: 14  LTRRIADQDS---VLILRLGLGTVSEDILRHIELEA------KDSANELLKPLRKIID-- 62
           ++  +          +L L L       L   ++ A      +++   L+K  +++I   
Sbjct: 68  VSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVK-TKELIKNY 126

Query: 63  ----ELVKGERNKWRQS 75
                + K   +K   S
Sbjct: 127 ITARIMAKRPFDKKSNS 143


>1zk6_A Foldase protein PRSA; alpha/beta structure, isomerase; NMR
          {Bacillus subtilis}
          Length = 93

 Score = 25.0 bits (54), Expect = 3.7
 Identities = 8/23 (34%), Positives = 12/23 (52%)

Query: 40 RHIELEAKDSANELLKPLRKIID 62
           HI +  K +A E+ K L+K   
Sbjct: 8  SHILVADKKTAEEVEKKLKKGEK 30


>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics,
          structural genomics consortium, disease mutation,
          phenylalanine catabolism; HET: PLP; 2.30A {Homo
          sapiens}
          Length = 427

 Score = 25.1 bits (53), Expect = 4.2
 Identities = 11/54 (20%), Positives = 21/54 (38%), Gaps = 8/54 (14%)

Query: 29 LGLGTVSEDILRHIELEAKDSANELLKPLRKIIDELVKGERNKWRQSDNPDDDV 82
          + LGT +        +   D A +   P+R I+D +        +   NP+  +
Sbjct: 11 VDLGTENLYFQSMWSVRPSDMAKKTFNPIRAIVDNM--------KVKPNPNKTM 56


>1eq3_A Peptidyl-prolyl CIS/trans isomerase (ppiase); parvulin; NMR {Homo
          sapiens} SCOP: d.26.1.1 PDB: 1fjd_A
          Length = 96

 Score = 25.2 bits (55), Expect = 4.2
 Identities = 6/20 (30%), Positives = 9/20 (45%)

Query: 40 RHIELEAKDSANELLKPLRK 59
          RHI  E      E ++ L+ 
Sbjct: 6  RHILCEKHGKIMEAMEKLKS 25


>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
          photosynthetic reaction center, peripheral antenna;
          HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
          Length = 154

 Score = 25.0 bits (53), Expect = 4.4
 Identities = 7/15 (46%), Positives = 10/15 (66%), Gaps = 1/15 (6%)

Query: 42 IELEAKDSANEL-LK 55
          ++L A DSA  L +K
Sbjct: 29 LKLYADDSAPALAIK 43


>2i39_A Protein N1, N1L protein; all alpha, viral protein; 2.20A {Vaccinia
           virus} PDB: 2uxe_A
          Length = 137

 Score = 24.9 bits (54), Expect = 4.9
 Identities = 12/60 (20%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 7   NGPKFDVLTRRIADQDSVLILRLGL-GTVSEDILRHIELEAKDSANELLKPLRKIIDELV 65
           +GP  D L + + + +    + + +   V+ DI    E+  ++S   L + +    D+L+
Sbjct: 72  DGPLLDRLNQPVNNIEDAKRM-IAISAKVARDIGERSEIRWEESFTILFRMIETYFDDLM 130


>1jns_A Peptidyl-prolyl CIS-trans isomerase C; alpha-beta sandwich, CIS
          peptide bond; NMR {Escherichia coli} SCOP: d.26.1.1
          PDB: 1jnt_A
          Length = 92

 Score = 24.9 bits (54), Expect = 5.2
 Identities = 6/23 (26%), Positives = 13/23 (56%)

Query: 40 RHIELEAKDSANELLKPLRKIID 62
           HI ++ +  A +LL+ ++   D
Sbjct: 7  LHILVKEEKLALDLLEQIKNGAD 29


>1ffg_B Chemotaxis protein CHEA; doubly wound (beta/alpha)5 fold,
          transferase/signaling protein complex; 2.10A
          {Escherichia coli} SCOP: d.58.24.1 PDB: 1a0o_B 1fwp_A
          1ffs_B 1ffw_B
          Length = 134

 Score = 24.3 bits (52), Expect = 6.9
 Identities = 11/50 (22%), Positives = 17/50 (34%), Gaps = 1/50 (2%)

Query: 38 ILRHIELEAKDSANELLKPLRKIID-ELVKGERNKWRQSDNPDDDVCEVC 86
          IL  ++    D   E L  L  + D        +     D  +DD+  V 
Sbjct: 40 ILSRLKAGEVDLLEEELGHLTTLTDVVKGADSLSAILPGDIAEDDITAVL 89


  Database: pdb70
    Posted date:  Jan 26, 2011 11:21 AM
  Number of letters in database: 5,693,230
  Number of sequences in database:  24,244
  
Lambda     K      H
   0.317    0.137    0.409 

Gapped
Lambda     K      H
   0.267   0.0439    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 24244
Number of Hits to DB: 788,541
Number of extensions: 31242
Number of successful extensions: 157
Number of sequences better than 10.0: 1
Number of HSP's gapped: 157
Number of HSP's successfully gapped: 23
Length of query: 87
Length of database: 5,693,230
Length adjustment: 55
Effective length of query: 32
Effective length of database: 4,359,810
Effective search space: 139513920
Effective search space used: 139513920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.8 bits)