RPS-BLAST 2.2.22 [Sep-27-2009]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= gi|254781228|ref|YP_003065641.1| hypothetical protein
CLIBASIA_05675 [Candidatus Liberibacter asiaticus str. psy62]
         (87 letters)



>d1jnsa_ d.26.1.1 (A:) Parvulin 10 (rotamase C) {Escherichia coli
          [TaxId: 562]}
          Length = 92

 Score = 24.6 bits (53), Expect = 2.3
 Identities = 6/23 (26%), Positives = 13/23 (56%)

Query: 40 RHIELEAKDSANELLKPLRKIID 62
           HI ++ +  A +LL+ ++   D
Sbjct: 7  LHILVKEEKLALDLLEQIKNGAD 29


>d1eq3a_ d.26.1.1 (A:) Parvulin {Human (Homo sapiens), hpar14
          [TaxId: 9606]}
          Length = 96

 Score = 23.9 bits (51), Expect = 3.7
 Identities = 6/20 (30%), Positives = 9/20 (45%)

Query: 40 RHIELEAKDSANELLKPLRK 59
          RHI  E      E ++ L+ 
Sbjct: 6  RHILCEKHGKIMEAMEKLKS 25


>d1jcua_ d.115.1.1 (A:) Hypothetical protein MTH1692 {Archaeon
           Methanobacterium thermoautotrophicum [TaxId: 145262]}
          Length = 208

 Score = 23.4 bits (49), Expect = 6.2
 Identities = 6/20 (30%), Positives = 10/20 (50%)

Query: 22  DSVLILRLGLGTVSEDILRH 41
           +   +LR G G +   +LR 
Sbjct: 185 NPPRVLRRGKGPLDPVLLRG 204


>d1f5xa_ a.87.1.1 (A:) RhoGEF Vav {Mouse (Mus musculus) [TaxId:
          10090]}
          Length = 208

 Score = 22.8 bits (48), Expect = 7.5
 Identities = 6/37 (16%), Positives = 13/37 (35%), Gaps = 1/37 (2%)

Query: 34 VSEDILRHIELEAKDSANELLKPLRKIIDELVKGERN 70
          + ED++R +E                 + E+ + E  
Sbjct: 6  IYEDLMR-LESVPTPPKMTEYDKRCCCLREIQQTEEK 41


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.137    0.409 

Gapped
Lambda     K      H
   0.267   0.0680    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 340,854
Number of extensions: 13530
Number of successful extensions: 48
Number of sequences better than 10.0: 1
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 18
Length of query: 87
Length of database: 2,407,596
Length adjustment: 52
Effective length of query: 35
Effective length of database: 1,693,636
Effective search space: 59277260
Effective search space used: 59277260
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 47 (22.0 bits)