BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254781228|ref|YP_003065641.1| hypothetical protein
CLIBASIA_05675 [Candidatus Liberibacter asiaticus str. psy62]
         (87 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254781228|ref|YP_003065641.1| hypothetical protein CLIBASIA_05675 [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 87

 Score =  177 bits (448), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 87/87 (100%), Positives = 87/87 (100%)

Query: 1  MTNTPWNGPKFDVLTRRIADQDSVLILRLGLGTVSEDILRHIELEAKDSANELLKPLRKI 60
          MTNTPWNGPKFDVLTRRIADQDSVLILRLGLGTVSEDILRHIELEAKDSANELLKPLRKI
Sbjct: 1  MTNTPWNGPKFDVLTRRIADQDSVLILRLGLGTVSEDILRHIELEAKDSANELLKPLRKI 60

Query: 61 IDELVKGERNKWRQSDNPDDDVCEVCQ 87
          IDELVKGERNKWRQSDNPDDDVCEVCQ
Sbjct: 61 IDELVKGERNKWRQSDNPDDDVCEVCQ 87


>gi|254780143|ref|YP_003064556.1| DNA-directed RNA polymerase subunit beta [Candidatus Liberibacter
            asiaticus str. psy62]
          Length = 1386

 Score = 23.1 bits (48), Expect = 0.88,   Method: Compositional matrix adjust.
 Identities = 11/38 (28%), Positives = 20/38 (52%)

Query: 50   ANELLKPLRKIIDELVKGERNKWRQSDNPDDDVCEVCQ 87
            AN  + PLR  +++++    +  + SD  DD V  V +
Sbjct: 1161 ANGDISPLRSFLEKVIGTGSHTEKISDYDDDSVLRVAE 1198


>gi|254780784|ref|YP_003065197.1| polynucleotide phosphorylase/polyadenylase [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 699

 Score = 22.3 bits (46), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 4/46 (8%)

Query: 21  QDSVLILRLGLGTVSEDILRHIELEAKDSANELLKPLRKIIDELVK 66
           QD+VL++ L    +SED++    L+A    +   KP+ + I +L K
Sbjct: 182 QDAVLMVELEANQLSEDVV----LDAIIFGHNECKPVIEAISKLAK 223



 Score = 20.0 bits (40), Expect = 6.9,   Method: Composition-based stats.
 Identities = 12/50 (24%), Positives = 26/50 (52%), Gaps = 3/50 (6%)

Query: 17  RIADQDS---VLILRLGLGTVSEDILRHIELEAKDSANELLKPLRKIIDE 63
           ++A  DS    + + + +G +SE+I+     +AK     +L  + K++ E
Sbjct: 492 KVAGTDSGITAMQMDMKIGGISENIMVMALQQAKRGRLHILNEMSKVLSE 541


>gi|254781130|ref|YP_003065543.1| hypothetical protein CLIBASIA_05160 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 378

 Score = 22.3 bits (46), Expect = 1.5,   Method: Composition-based stats.
 Identities = 8/12 (66%), Positives = 9/12 (75%)

Query: 1   MTNTPWNGPKFD 12
           M+NTP N  KFD
Sbjct: 367 MSNTPLNSQKFD 378


>gi|254781013|ref|YP_003065426.1| phage-associated protein [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 302

 Score = 21.6 bits (44), Expect = 2.4,   Method: Composition-based stats.
 Identities = 7/20 (35%), Positives = 13/20 (65%)

Query: 61  IDELVKGERNKWRQSDNPDD 80
           + E+V+ E   WR+  +P+D
Sbjct: 124 LQEIVQEENKTWRRLYDPND 143


>gi|254780496|ref|YP_003064909.1| integration host factor subunit alpha [Candidatus Liberibacter
          asiaticus str. psy62]
          Length = 114

 Score = 19.6 bits (39), Expect = 9.5,   Method: Compositional matrix adjust.
 Identities = 10/33 (30%), Positives = 15/33 (45%)

Query: 36 EDILRHIELEAKDSANELLKPLRKIIDELVKGE 68
          + I +   L  KDS   +     +I D  V+GE
Sbjct: 12 KSISKEFGLSRKDSTRFVTTLFNEICDSAVRGE 44


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.317    0.137    0.409 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 55,741
Number of Sequences: 1233
Number of extensions: 1937
Number of successful extensions: 13
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of query: 87
length of database: 328,796
effective HSP length: 56
effective length of query: 31
effective length of database: 259,748
effective search space:  8052188
effective search space used:  8052188
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (20.7 bits)
S2: 31 (16.5 bits)