HHsearch alignment for GI: 255764460 and conserved domain: COG0056
>COG0056 AtpA F0F1-type ATP synthase, alpha subunit [Energy production and conversion].
Probab=97.45 E-value=0.0051 Score=38.67 Aligned_cols=162 Identities=23% Similarity=0.348 Sum_probs=97.7
Q ss_pred CCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCC--HHH---HHHHC-CCH
Q ss_conf 501477278999723897268807999706872378999999875200898799997388556--688---99819-883
Q gi|255764460|r 46 EVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD--SIY---ARKLG-VDL 119 (363)
Q Consensus 46 ~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~--~~~---a~~~G-vd~ 119 (363)
T Consensus 144 ePlqTGikaIDamiPIG---RGQRELIIGDRQTGKTaIAidtIiNQk~~~v~CIYVAIGQK~stva~vv~tL~e~gAm~y 220 (504)
T COG0056 144 EPLQTGIKAIDALIPIG---RGQRELIIGDRQTGKTAIAIDTIINQKGSGVKCIYVAIGQKRSTVANVVRTLEEHGAMDY 220 (504)
T ss_pred CHHHHHHHHHHHHCCCC---CCCEEEEECCCCCCCCHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCC
T ss_conf 33442057776405657---883378751576783110278898355689479999815437789999999997597513
Q ss_pred HHEEEEEC-CC-HHH------HHHHHHHHHHCCCCCEEEEECCCCCCC-HHHH----HHHHH-HHCCC----HHHHHHHH
Q ss_conf 34489725-84-899------999999997448976899814333220-2655----43455-53022----47888767
Q gi|255764460|r 120 KNLLISQP-DT-GEQ------ALEITDMLVRSGAVDIIVIDSVAALTP-RAEI----EGDMG-ESLPG----MQARLMSQ 181 (363)
Q Consensus 120 ~~l~~~~~-~~-~E~------~~~i~~~li~~~~~~liViDSi~al~p-~~Ei----e~~~~-d~~~g----~~ar~ms~ 181 (363)
T Consensus 221 TiVV~AsASd~a~lqYLaPy~g~a~aE~f~~~G~dvLIVyDDLsKhA~AYReiSLLlrRPPGREAyPGDVFYlHSrLLER 300 (504)
T COG0056 221 TIVVAASASDSAPLQYLAPYAGCAMAEYFRDNGKDVLIVYDDLSKHAVAYREISLLLRRPPGREAYPGDVFYLHSRLLER 300 (504)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEHHHHHHHH
T ss_conf 39998147762355553022555889999865974899960741889999999998369998657888640011799999
Q ss_pred HHHHHHHHHCCCCCEEEEEECCCCCCCCC
Q ss_conf 76777764201781899986341145665
Q gi|255764460|r 182 ALRKLTSSISRSKCILVFINQMRMKIGVM 210 (363)
Q Consensus 182 ~lrkl~~~~~k~~~~~i~iNQ~r~~ig~m 210 (363)
T Consensus 301 Aakl~~e~g~GSiTALPIIETqagDvSAy 329 (504)
T COG0056 301 AAKLSDELGGGSITALPIIETQAGDVSAY 329 (504)
T ss_pred HHHHCCCCCCCCEEEEEEEEECCCCEEEE
T ss_conf 88620245887247511688616866234