HHsearch alignment for GI: 255764460 and conserved domain: COG0468
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair].
Probab=100.00 E-value=0 Score=475.94 Aligned_cols=273 Identities=64% Similarity=0.981 Sum_probs=258.0
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHH
Q ss_conf 67699999999999867618873797036655334655014772789997238972688079997068723789999998
Q gi|255764460|r 9 IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI 88 (363)
Q Consensus 9 ~~~k~~~l~~~~~~i~k~~g~~~~~~lg~~~~~~~~~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~ 88 (363)
T Consensus 4 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~TGs~~LD~~LG-GGl~~g~ItEiyG~~gsGKT~lal~~~ 81 (279)
T COG0468 4 GIDEEKALEAALAQIEKAFGKGSIMALGGDER-REDIEAISTGSLALDEALG-GGLPRGRITEIYGPESSGKTTLALQLV 81 (279)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH-HHCCCCCCCCCHHHHHHHC-CCCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf 41466689999999987414440555457887-6436601655055787746-886553589984688765466899998
Q ss_pred HHHHHCCCEEEEEECCCCCCHHHHHHHCCC-HHHEEEEECCCHHHHHHHHHHHHHCCC--CCEEEEECCCCCCCHHHHHH
Q ss_conf 752008987999973885566889981988-334489725848999999999974489--76899814333220265543
Q gi|255764460|r 89 AQSQKTGGTCAFVDAEHALDSIYARKLGVD-LKNLLISQPDTGEQALEITDMLVRSGA--VDIIVIDSVAALTPRAEIEG 165 (363)
Q Consensus 89 a~~qk~g~~~~~iD~E~~~~~~~a~~~Gvd-~~~l~~~~~~~~E~~~~i~~~li~~~~--~~liViDSi~al~p~~Eie~ 165 (363)
T Consensus 82 ~~aq~~g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~v~~~~~~e~q~~i~~~~~~~~~~~i~LvVVDSvaa~~r~~~~~- 160 (279)
T COG0468 82 ANAQKPGGKAAFIDTEHALDPERAKQLGVDLLDNLLVSQPDTGEQQLEIAEKLARSGAEKIDLLVVDSVAALVRAEEIE- 160 (279)
T ss_pred HHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHCC-
T ss_conf 8865379808999589998999999988754215368668977999999999987546887889982574346365548-
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEE
Q ss_conf 45553022478887677677776420178189998634114566546651256553111111248975045534457724
Q gi|255764460|r 166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI 245 (363)
Q Consensus 166 ~~~d~~~g~~ar~ms~~lrkl~~~~~k~~~~~i~iNQ~r~~ig~m~g~p~~~~GG~al~~~aS~rl~i~k~~~ik~~~~~ 245 (363)
T Consensus 161 ---d~~~~~~~r~ls~~l~~L~~~a~~~~~~vi~~NQv~~k~~~~f~~~~~~~GG~~L~~~as~rl~l~k~~~~~--~~- 234 (279)
T COG0468 161 ---DGHLGLRARLLSKALRKLTRLANKYNTAVIFTNQVRAKIGVMFGDPETTTGGNALKFYASVRLDLRRIESLK--ED- 234 (279)
T ss_pred ---CCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCEEEECCCCCCCCCCCCCCHHHHHHHHEEEEEEECCCCC--CC-
T ss_conf ---534899999999999999999997495899978403406766688665877238875532477765224432--35-
Q ss_pred EEEEEEEEEEECCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCC
Q ss_conf 767999877405778985158999861874231115999997328
Q gi|255764460|r 246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKAS 290 (363)
Q Consensus 246 iG~~v~~kv~Knk~~~P~~~a~~~i~fg~GI~~~~~lldla~~~g 290 (363)
T Consensus 235 ~g~~r~~~vvk~~~~p~~~~a~f~I~~~~~~~~~~~~~~~~~~~~ 279 (279)
T COG0468 235 VGNKRRVKVVKNKVAPPFKEAEFDITYGGGIDREGELIDLGVKQG 279 (279)
T ss_pred CCCEEEEEEEECCCCCCCCEEEEEEECCCCCCCCCCHHHHHHCCC
T ss_conf 687389999747989987656899650764665320354442069