HHsearch alignment for GI: 255764460 and conserved domain: COG0468

>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair].
Probab=100.00  E-value=0  Score=475.94  Aligned_cols=273  Identities=64%  Similarity=0.981  Sum_probs=258.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHH
Q ss_conf             67699999999999867618873797036655334655014772789997238972688079997068723789999998
Q gi|255764460|r    9 IVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTI   88 (363)
Q Consensus         9 ~~~k~~~l~~~~~~i~k~~g~~~~~~lg~~~~~~~~~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~   88 (363)
T Consensus         4 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~TGs~~LD~~LG-GGl~~g~ItEiyG~~gsGKT~lal~~~   81 (279)
T COG0468           4 GIDEEKALEAALAQIEKAFGKGSIMALGGDER-REDIEAISTGSLALDEALG-GGLPRGRITEIYGPESSGKTTLALQLV   81 (279)
T ss_pred             CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH-HHCCCCCCCCCHHHHHHHC-CCCCCCEEEEEECCCCCCHHHHHHHHH
T ss_conf             41466689999999987414440555457887-6436601655055787746-886553589984688765466899998


Q ss_pred             HHHHHCCCEEEEEECCCCCCHHHHHHHCCC-HHHEEEEECCCHHHHHHHHHHHHHCCC--CCEEEEECCCCCCCHHHHHH
Q ss_conf             752008987999973885566889981988-334489725848999999999974489--76899814333220265543
Q gi|255764460|r   89 AQSQKTGGTCAFVDAEHALDSIYARKLGVD-LKNLLISQPDTGEQALEITDMLVRSGA--VDIIVIDSVAALTPRAEIEG  165 (363)
Q Consensus        89 a~~qk~g~~~~~iD~E~~~~~~~a~~~Gvd-~~~l~~~~~~~~E~~~~i~~~li~~~~--~~liViDSi~al~p~~Eie~  165 (363)
T Consensus        82 ~~aq~~g~~a~fIDtE~~l~p~r~~~l~~~~~d~l~v~~~~~~e~q~~i~~~~~~~~~~~i~LvVVDSvaa~~r~~~~~-  160 (279)
T COG0468          82 ANAQKPGGKAAFIDTEHALDPERAKQLGVDLLDNLLVSQPDTGEQQLEIAEKLARSGAEKIDLLVVDSVAALVRAEEIE-  160 (279)
T ss_pred             HHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHCC-
T ss_conf             8865379808999589998999999988754215368668977999999999987546887889982574346365548-


Q ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEE
Q ss_conf             45553022478887677677776420178189998634114566546651256553111111248975045534457724
Q gi|255764460|r  166 DMGESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSI  245 (363)
Q Consensus       166 ~~~d~~~g~~ar~ms~~lrkl~~~~~k~~~~~i~iNQ~r~~ig~m~g~p~~~~GG~al~~~aS~rl~i~k~~~ik~~~~~  245 (363)
T Consensus       161 ---d~~~~~~~r~ls~~l~~L~~~a~~~~~~vi~~NQv~~k~~~~f~~~~~~~GG~~L~~~as~rl~l~k~~~~~--~~-  234 (279)
T COG0468         161 ---DGHLGLRARLLSKALRKLTRLANKYNTAVIFTNQVRAKIGVMFGDPETTTGGNALKFYASVRLDLRRIESLK--ED-  234 (279)
T ss_pred             ---CCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCEEEECCCCCCCCCCCCCCHHHHHHHHEEEEEEECCCCC--CC-
T ss_conf             ---534899999999999999999997495899978403406766688665877238875532477765224432--35-


Q ss_pred             EEEEEEEEEEECCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCC
Q ss_conf             767999877405778985158999861874231115999997328
Q gi|255764460|r  246 TGNQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKAS  290 (363)
Q Consensus       246 iG~~v~~kv~Knk~~~P~~~a~~~i~fg~GI~~~~~lldla~~~g  290 (363)
T Consensus       235 ~g~~r~~~vvk~~~~p~~~~a~f~I~~~~~~~~~~~~~~~~~~~~  279 (279)
T COG0468         235 VGNKRRVKVVKNKVAPPFKEAEFDITYGGGIDREGELIDLGVKQG  279 (279)
T ss_pred             CCCEEEEEEEECCCCCCCCEEEEEEECCCCCCCCCCHHHHHHCCC
T ss_conf             687389999747989987656899650764665320354442069