HHsearch alignment for GI: 255764460 and conserved domain: COG1222
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones].
Probab=97.28 E-value=0.0019 Score=41.40 Aligned_cols=126 Identities=27% Similarity=0.358 Sum_probs=64.4
Q ss_pred CCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHH-CCCHHHEEEEECCC
Q ss_conf 72789997238972688079997068723789999998752008987999973885566889981-98833448972584
Q gi|255764460|r 51 GSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL-GVDLKNLLISQPDT 129 (363)
Q Consensus 51 G~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~~~a~~~-Gvd~~~l~~~~~~~ 129 (363)
T Consensus 172 ~~PElF~~~---GI~PPKGVLLYGPPGTGKTLLA-kAVA~~T----~AtFIrvv---gSElVqKYiG-EGaRl------- 232 (406)
T COG1222 172 KNPELFEEL---GIDPPKGVLLYGPPGTGKTLLA-KAVANQT----DATFIRVV---GSELVQKYIG-EGARL------- 232 (406)
T ss_pred CCHHHHHHC---CCCCCCCEEEECCCCCCHHHHH-HHHHHCC----CCEEEEEC---CHHHHHHHHC-CCHHH-------
T ss_conf 688899974---9999971276689997588999-9987205----86699942---1999999834-11699-------
Q ss_pred HHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEE-EEC
Q ss_conf 8999999999974489768998143332202655434555302247888767767777642017818999-863
Q gi|255764460|r 130 GEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCILVF-INQ 202 (363)
Q Consensus 130 ~E~~~~i~~~li~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~~~~k~~~~~i~-iNQ 202 (363)
T Consensus 233 VRelF----~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrE---VQRTmleLL~qlDGFD~~~nvKVI~ATNR 299 (406)
T COG1222 233 VRELF----ELAREKAPSIIFIDEIDAIGAKRFDSGTSGDRE---VQRTMLELLNQLDGFDPRGNVKVIMATNR 299 (406)
T ss_pred HHHHH----HHHHHCCCEEEEEECHHHHHCCCCCCCCCCHHH---HHHHHHHHHHHCCCCCCCCCEEEEEECCC
T ss_conf 99999----987414984999831122311113688885099---99999999986058897887689985588