HHsearch alignment for GI: 255764460 and conserved domain: COG3598
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair].
Probab=98.28 E-value=2.9e-05 Score=52.87 Aligned_cols=130 Identities=22% Similarity=0.312 Sum_probs=81.4
Q ss_pred CCCCCCCEEEEEECCCCHHHHHHHHHHH----------HHHHCCCEEEEEECCCCCCHH-------HHHHHCCCHHHEEE
Q ss_conf 9726880799970687237899999987----------520089879999738855668-------89981988334489
Q gi|255764460|r 62 GGFPKGRIVEIYGPESSGKTTLALHTIA----------QSQKTGGTCAFVDAEHALDSI-------YARKLGVDLKNLLI 124 (363)
Q Consensus 62 GG~p~Gri~ei~G~~~sGKTtlal~~~a----------~~qk~g~~~~~iD~E~~~~~~-------~a~~~Gvd~~~l~~ 124 (363)
T Consensus 84 ~~fr~g~~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~r-e~~L~Rl~~v~a~mgLsPadvrn 162 (402)
T COG3598 84 EFFRKGYVSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELYR-EDILERLEPVRARMGLSPADVRN 162 (402)
T ss_pred HHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCH-HHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 77651705898448862376899999999986477745335588807999822686-88999999999870998576322
Q ss_pred EEC----------CCHHH-HHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 725----------84899-9999999974489768998143332202655434555302247888767767777642017
Q gi|255764460|r 125 SQP----------DTGEQ-ALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRS 193 (363)
Q Consensus 125 ~~~----------~~~E~-~~~i~~~li~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~~~~k~ 193 (363)
T Consensus 163 ~dltd~~Gaa~~~d~l~pkl~rRfek~~~Q~rp~~vViDp~v~f~~G~s~--------s~vqv~~fi~~~rkla~---~l 231 (402)
T COG3598 163 MDLTDVSGAADESDVLSPKLYRRFEKILEQKRPDFVVIDPFVAFYEGKSI--------SDVQVKEFIKKTRKLAR---NL 231 (402)
T ss_pred EECCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCHHHHCCCCCC--------HHHHHHHHHHHHHHHHH---HC
T ss_conf 00002456787200105899999999998747874997344542277411--------16899999999999998---62
Q ss_pred CCEEEEEECC
Q ss_conf 8189998634
Q gi|255764460|r 194 KCILVFINQM 203 (363)
Q Consensus 194 ~~~~i~iNQ~ 203 (363)
T Consensus 232 ~caIiy~hHt 241 (402)
T COG3598 232 ECAIIYIHHT 241 (402)
T ss_pred CCEEEEEECC
T ss_conf 7739999445