HHsearch alignment for GI: 255764460 and conserved domain: PRK00771
>PRK00771 signal recognition particle protein Srp54; Provisional.
Probab=97.78 E-value=0.00064 Score=44.36 Aligned_cols=100 Identities=23% Similarity=0.200 Sum_probs=63.0
Q ss_pred HHHHHHCCCCCC---CCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCHHH--E-EEEEC
Q ss_conf 899972389726---88079997068723789999998752008987999973885566889981988334--4-89725
Q gi|255764460|r 54 GLDIALGIGGFP---KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN--L-LISQP 127 (363)
Q Consensus 54 ~lD~~Lg~GG~p---~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~~~a~~~Gvd~~~--l-~~~~~ 127 (363)
T Consensus 82 eL~~llg-~~~~~~~kP~Vim~vGlqGsGKTTT~aKLA~~~kk~g~kv~lvaa-Dt~RpaA~eQL~~la~~~~v~~~~~~ 159 (433)
T PRK00771 82 ELVKLLG-EEAEILLKPQTILLVGLQGSGKTTTAAKLARYFQKKGLKVGVICA-DTWRPGAYEQLKQLCEKINVPFYGDP 159 (433)
T ss_pred HHHHHHC-CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEC-CCCCHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 9999849-676566898589997378897899999999999977994678506-78836899999999986388731788
Q ss_pred ---CCHHHHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf ---8489999999999744897689981433322
Q gi|255764460|r 128 ---DTGEQALEITDMLVRSGAVDIIVIDSVAALT 158 (363)
Q Consensus 128 ---~~~E~~~~i~~~li~~~~~~liViDSi~al~ 158 (363)
T Consensus 160 ~~~dp~~i~~~a~~~---~k~~DvviiDTAGRl~ 190 (433)
T PRK00771 160 KEKDAVKIVKEGLEK---LKKVDVIIVDTAGRHK 190 (433)
T ss_pred CCCCHHHHHHHHHHH---HCCCCEEEEECCCCCC
T ss_conf 999999999999998---4569889997765210