HHsearch alignment for GI: 255764460 and conserved domain: PRK00771

>PRK00771 signal recognition particle protein Srp54; Provisional.
Probab=97.78  E-value=0.00064  Score=44.36  Aligned_cols=100  Identities=23%  Similarity=0.200  Sum_probs=63.0

Q ss_pred             HHHHHHCCCCCC---CCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCCHHH--E-EEEEC
Q ss_conf             899972389726---88079997068723789999998752008987999973885566889981988334--4-89725
Q gi|255764460|r   54 GLDIALGIGGFP---KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKN--L-LISQP  127 (363)
Q Consensus        54 ~lD~~Lg~GG~p---~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~~~a~~~Gvd~~~--l-~~~~~  127 (363)
T Consensus        82 eL~~llg-~~~~~~~kP~Vim~vGlqGsGKTTT~aKLA~~~kk~g~kv~lvaa-Dt~RpaA~eQL~~la~~~~v~~~~~~  159 (433)
T PRK00771         82 ELVKLLG-EEAEILLKPQTILLVGLQGSGKTTTAAKLARYFQKKGLKVGVICA-DTWRPGAYEQLKQLCEKINVPFYGDP  159 (433)
T ss_pred             HHHHHHC-CCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEC-CCCCHHHHHHHHHHHHHCCCCCCCCC
T ss_conf             9999849-676566898589997378897899999999999977994678506-78836899999999986388731788


Q ss_pred             ---CCHHHHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf             ---8489999999999744897689981433322
Q gi|255764460|r  128 ---DTGEQALEITDMLVRSGAVDIIVIDSVAALT  158 (363)
Q Consensus       128 ---~~~E~~~~i~~~li~~~~~~liViDSi~al~  158 (363)
T Consensus       160 ~~~dp~~i~~~a~~~---~k~~DvviiDTAGRl~  190 (433)
T PRK00771        160 KEKDAVKIVKEGLEK---LKKVDVIIVDTAGRHK  190 (433)
T ss_pred             CCCCHHHHHHHHHHH---HCCCCEEEEECCCCCC
T ss_conf             999999999999998---4569889997765210