HHsearch alignment for GI: 255764460 and conserved domain: PRK05703
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated.
Probab=97.62 E-value=0.00066 Score=44.28 Aligned_cols=86 Identities=24% Similarity=0.442 Sum_probs=57.8
Q ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHH-HHCCC-EEEEEECCCCCC-------HHHHHHHCCCHHHEEEEECCCHHHHHH
Q ss_conf 688079997068723789999998752-00898-799997388556-------688998198833448972584899999
Q gi|255764460|r 65 PKGRIVEIYGPESSGKTTLALHTIAQS-QKTGG-TCAFVDAEHALD-------SIYARKLGVDLKNLLISQPDTGEQALE 135 (363)
Q Consensus 65 p~Gri~ei~G~~~sGKTtlal~~~a~~-qk~g~-~~~~iD~E~~~~-------~~~a~~~Gvd~~~l~~~~~~~~E~~~~ 135 (363)
T Consensus 208 ~~~~vvalVGPTGVGKTTTiAKLAA~~~l~~~~~kV~lIT~D-tyRigA~eQLk~Ya~ilgvp~~---v--~~~~~~l~~ 281 (412)
T PRK05703 208 EQGGVVALVGPTGVGKTTTLAKLAARYALEEGKDKVALITLD-TYRIGAVEQLKTYAKIMGIPVK---V--AYDPKELAK 281 (412)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEEC-CCCHHHHHHHHHHHHHCCCEEE---E--ECCHHHHHH
T ss_conf 567369998888875676999999999997299817999837-6777799999999997197379---8--479999999
Q ss_pred HHHHHHHCCCCCEEEEECCCCCCCH
Q ss_conf 9999974489768998143332202
Q gi|255764460|r 136 ITDMLVRSGAVDIIVIDSVAALTPR 160 (363)
Q Consensus 136 i~~~li~~~~~~liViDSi~al~p~ 160 (363)
T Consensus 282 al~~~---~~~dlILIDTaG-~s~~ 302 (412)
T PRK05703 282 ALEQL---ANCDLILIDTAG-RSQR 302 (412)
T ss_pred HHHHH---CCCCEEEEECCC-CCCC
T ss_conf 99871---589979996898-8978