HHsearch alignment for GI: 255764460 and conserved domain: PRK06067
>PRK06067 flagellar accessory protein FlaH; Validated.
Probab=99.88 E-value=1.4e-20 Score=149.62 Aligned_cols=206 Identities=20% Similarity=0.296 Sum_probs=140.7
Q ss_pred CCCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCH--HHHHHHCCCHH
Q ss_conf 4655014772789997238972688079997068723789999998752008987999973885566--88998198833
Q gi|255764460|r 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS--IYARKLGVDLK 120 (363)
Q Consensus 43 ~~~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~--~~a~~~Gvd~~ 120 (363)
T Consensus 9 ~~~e~i~tGi~~lD~~l~-GG~p~g~~~li~G~~G~GKt~~~~~f~~~~~~~g~~~~~~~~ee~~~~~~~~~~~~g~dl~ 87 (241)
T PRK06067 9 EEKEIISTGNEEIDRKLG-GGIPFGSLILIEGENDTGKSVLSQQFVWGALNQGKRGLAITTENTSKSYLKQMESLKLDIS 87 (241)
T ss_pred CCCCCCCCCCHHHHHHCC-CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHHHHHCCCCHH
T ss_conf 314525668755786506-9977990899980799887999999999998679829999942899999999998399859
Q ss_pred HE------EEEE--CC-------CHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 44------8972--58-------489999999999744897689981433322026554345553022478887677677
Q gi|255764460|r 121 NL------LISQ--PD-------TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRK 185 (363)
Q Consensus 121 ~l------~~~~--~~-------~~E~~~~i~~~li~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrk 185 (363)
T Consensus 88 ~~~~~G~L~i~~~~~~~~~~~~~~~~~ll~~l~~~v~~~~~~~vVIDSls~l~~~~~------~------~~~-~~~l~~ 154 (241)
T PRK06067 88 DFFIWGYLRIFPLNTEGFEWNSELAEKLLDLIIEFIKRRREEVIIIDSLTIFATYAS------E------DDV-LNFFTE 154 (241)
T ss_pred HHHHCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHCCCC------H------HHH-HHHHHH
T ss_conf 998669705783241113421556899999999999971998999928017541388------8------999-999999
Q ss_pred HHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEE-EEEEECCCCCC--
Q ss_conf 776420178189998634114566546651256553111111248975045534457724767999-87740577898--
Q gi|255764460|r 186 LTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTR-VKVVKNKMASP-- 262 (363)
Q Consensus 186 l~~~~~k~~~~~i~iNQ~r~~ig~m~g~p~~~~GG~al~~~aS~rl~i~k~~~ik~~~~~iG~~v~-~kv~Knk~~~P-- 262 (363)
T Consensus 155 l~~l~~-~g~tvllt~~~----~~~~~~~-----~~~i~~vaD~vI~Lr~~~~---~----g~~~R~L~V~K~RGs~h~~ 217 (241)
T PRK06067 155 CKNLCD-NGKTILITLHP----YAFSEDT-----LVRIRSICDVHLKLRKEQV---G----DRYVKVLEVVKLRGARKTT 217 (241)
T ss_pred HHHHHH-CCCEEEEEECC----CCCCCCC-----CCCEEEEEEEEEEEEEEEE---C----CEEEEEEEEEEECCCCCCC
T ss_conf 999996-89889999056----7647664-----3124899899999587843---9----9999999999915998998
Q ss_pred CCEEEEEEECCCCCCCC
Q ss_conf 51589998618742311
Q gi|255764460|r 263 FKQVEFDIMYGEGISFF 279 (363)
Q Consensus 263 ~~~a~~~i~fg~GI~~~ 279 (363)
T Consensus 218 g~~i~F~I~~g~GI~v~ 234 (241)
T PRK06067 218 GNIISFDVDPGFGIKII 234 (241)
T ss_pred CCEEEEEECCCCCEEEE
T ss_conf 88888998389875998