HHsearch alignment for GI: 255764460 and conserved domain: PRK06793
>PRK06793 fliI flagellum-specific ATP synthase; Validated.
Probab=97.93 E-value=0.00014 Score=48.55 Aligned_cols=112 Identities=21% Similarity=0.282 Sum_probs=71.1
Q ss_pred CCCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCC-HHHHHH-H---CC
Q ss_conf 465501477278999723897268807999706872378999999875200898799997388556-688998-1---98
Q gi|255764460|r 43 EGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD-SIYARK-L---GV 117 (363)
Q Consensus 43 ~~~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~-~~~a~~-~---Gv 117 (363)
T Consensus 135 ~i~e~l~TGIraID~l~p---igrGQR~gIfg~sGvGKstLl~~i~~~-~~adv~Vi~lIGeRgrEv~efi~~~l~~~gl 210 (432)
T PRK06793 135 EITDVFETGIKSIDSMLT---IGIGQKIGIFAGSGVGKSTLLGMIAKN-AKADINVISLVGERGREVKDFIRKELGEEGM 210 (432)
T ss_pred CCCCCCCCCCCHHHHCCC---CCCCCEEEEECCCCCCHHHHHHHHHHH-CCCCCEEEEEEEEECHHHHHHHHHHHHCCCC
T ss_conf 778740048731000156---124626666326898789999999872-4578657999888627999999998644675
Q ss_pred CHHHEEEEECCC--HH------HHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf 833448972584--89------999999999744897689981433322
Q gi|255764460|r 118 DLKNLLISQPDT--GE------QALEITDMLVRSGAVDIIVIDSVAALT 158 (363)
Q Consensus 118 d~~~l~~~~~~~--~E------~~~~i~~~li~~~~~~liViDSi~al~ 158 (363)
T Consensus 211 ~~tvvV~atsd~p~~~r~~a~~~a~aiAEyfrd~G~~VLli~DslTr~A 259 (432)
T PRK06793 211 RKSVVVVATSDESHLMQLRAAKLATSIAEYFRDQGNNVLLMMDSVTRFA 259 (432)
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHH
T ss_conf 2127887258899899998875512378899866996899945678888