HHsearch alignment for GI: 255764460 and conserved domain: PRK06893
>PRK06893 DNA replication initiation factor; Validated.
Probab=97.49 E-value=0.0005 Score=45.03 Aligned_cols=88 Identities=17% Similarity=0.242 Sum_probs=57.0
Q ss_pred CCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCC--CCHHHHHHH-CCC---HHHEEE--EECCCHHHH
Q ss_conf 972688079997068723789999998752008987999973885--566889981-988---334489--725848999
Q gi|255764460|r 62 GGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHA--LDSIYARKL-GVD---LKNLLI--SQPDTGEQA 133 (363)
Q Consensus 62 GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~--~~~~~a~~~-Gvd---~~~l~~--~~~~~~E~~ 133 (363)
T Consensus 35 ~~~~-~~~l~i~G~~gsGKTHLLqa~~~~~~~~~~~~~yi~~~~~~~~~~~~l~~l~~~d~l~iDDi~~i~g~~~~e~~l 113 (229)
T PRK06893 35 IDLK-QPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQYFSPAVLENLEQQDLVCLDDLQAVIGNEEWELAI 113 (229)
T ss_pred CCCC-CCEEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEHHHHHHCCHHHHHHHHHCCEEEEECHHHHCCCHHHHHHH
T ss_conf 0246-987999899999889999999999997189859997377564069999876547979996723424883899999
Q ss_pred HHHHHHHHHCCCCCEEEE
Q ss_conf 999999974489768998
Q gi|255764460|r 134 LEITDMLVRSGAVDIIVI 151 (363)
Q Consensus 134 ~~i~~~li~~~~~~liVi 151 (363)
T Consensus 114 F~l~N~l~~~~~-~~ll~ 130 (229)
T PRK06893 114 FDLFNRIKESGK-TLLLI 130 (229)
T ss_pred HHHHHHHHHCCC-CEEEE
T ss_conf 999999997599-17998