HHsearch alignment for GI: 255764460 and conserved domain: PRK06995
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated.
Probab=97.43 E-value=0.0015 Score=42.07 Aligned_cols=87 Identities=24% Similarity=0.428 Sum_probs=57.9
Q ss_pred CCCCCEEEEEECCCCHHHHHHHHHHHHHH-HCCC-EEEEEECCCCCCH-------HHHHHHCCCHHHEEEEECCCHHHHH
Q ss_conf 26880799970687237899999987520-0898-7999973885566-------8899819883344897258489999
Q gi|255764460|r 64 FPKGRIVEIYGPESSGKTTLALHTIAQSQ-KTGG-TCAFVDAEHALDS-------IYARKLGVDLKNLLISQPDTGEQAL 134 (363)
Q Consensus 64 ~p~Gri~ei~G~~~sGKTtlal~~~a~~q-k~g~-~~~~iD~E~~~~~-------~~a~~~Gvd~~~l~~~~~~~~E~~~ 134 (363)
T Consensus 173 ~~~ggV~alVGPTGVGKTTTiAKLAAr~~l~~g~~kVaLIT~D-TYRIgAvEQLktYa~IlgvP-----v~vv~~~~eL~ 246 (404)
T PRK06995 173 MERGGVFALVGPTGVGKTTTTAKLAARCVMRHGASKVALLTTD-SYRIGGHEQLRIYGKILGVP-----VHAVKDAADLR 246 (404)
T ss_pred HCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECC-CCCHHHHHHHHHHHHHCCCE-----EEEECCHHHHH
T ss_conf 1147558986688876375899999999998389837999768-75478999999999875955-----99959999999
Q ss_pred HHHHHHHHCCCCCEEEEECCCCCCCH
Q ss_conf 99999974489768998143332202
Q gi|255764460|r 135 EITDMLVRSGAVDIIVIDSVAALTPR 160 (363)
Q Consensus 135 ~i~~~li~~~~~~liViDSi~al~p~ 160 (363)
T Consensus 247 ~aL~~l---~~~dlILIDTaG-rs~r 268 (404)
T PRK06995 247 LALAEL---RNKHIVLIDTVG-MSQR 268 (404)
T ss_pred HHHHHH---CCCCEEEEECCC-CCCC
T ss_conf 999970---899999980999-8976