HHsearch alignment for GI: 255764460 and conserved domain: PRK07960
>PRK07960 fliI flagellum-specific ATP synthase; Validated.
Probab=97.80 E-value=0.00011 Score=49.32 Aligned_cols=121 Identities=15% Similarity=0.222 Sum_probs=75.3
Q ss_pred CCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCC-HHHHHHH----CCC
Q ss_conf 65501477278999723897268807999706872378999999875200898799997388556-6889981----988
Q gi|255764460|r 44 GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD-SIYARKL----GVD 118 (363)
Q Consensus 44 ~~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~-~~~a~~~----Gvd 118 (363)
T Consensus 155 i~epL~TGIraID~llp---igrGQRigIfagsGvGKs~Ll~~iar~~~-adv~Vi~lIGERgrEv~efi~~~l~~~~~~ 230 (455)
T PRK07960 155 IEHVLDTGVRAINALLT---VGRGQRMGLFAGSGVGKSVLLGMMARYTR-ADVIVVGLIGERGREVKDFIENILGAEGRA 230 (455)
T ss_pred CCCCCCCCCEEEECCCC---CCCCCEEECCCCCCCCHHHHHHHHHHHHC-CCEEEEEEECEEHHHHHHHHHHHHCCCCCC
T ss_conf 78723268444403367---14787763248998849999999988608-985899720406289999999975147742
Q ss_pred HHHEEEEECC--------CHHHHHHHHHHHHHCCCCCEEEEECCCCCC-CHHHHHHHHH
Q ss_conf 3344897258--------489999999999744897689981433322-0265543455
Q gi|255764460|r 119 LKNLLISQPD--------TGEQALEITDMLVRSGAVDIIVIDSVAALT-PRAEIEGDMG 168 (363)
Q Consensus 119 ~~~l~~~~~~--------~~E~~~~i~~~li~~~~~~liViDSi~al~-p~~Eie~~~~ 168 (363)
T Consensus 231 rsvvv~atsd~~p~~r~~aa~~a~aiAEyFrd~Gk~VLl~~DslTr~A~A~REi~l~~g 289 (455)
T PRK07960 231 RSVVIAAPADVSPLLRMQGAAYATRIAEDFRDRGQHVLLIMDSLTRYAMAQREIALAIG 289 (455)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCC
T ss_conf 12799842666848888789999999999985587379997364788888888887637