HHsearch alignment for GI: 255764460 and conserved domain: PRK08927
>PRK08927 fliI flagellum-specific ATP synthase; Validated.
Probab=97.75 E-value=0.00024 Score=47.03 Aligned_cols=111 Identities=16% Similarity=0.220 Sum_probs=70.6
Q ss_pred CCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCC-HHHHHH-H---CCC
Q ss_conf 65501477278999723897268807999706872378999999875200898799997388556-688998-1---988
Q gi|255764460|r 44 GIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD-SIYARK-L---GVD 118 (363)
Q Consensus 44 ~~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~-~~~a~~-~---Gvd 118 (363)
T Consensus 138 i~e~L~TGIraID~l~p---igrGQRigIfagsGvGKs~Ll~~i~r~~~-adv~VialIGeRgrEv~efi~~~l~~~~l~ 213 (441)
T PRK08927 138 VGPPLDLGVRALNTFLT---CCRGQRLGIFAGSGVGKSVLLSMLARNTD-ADVSVIGLIGERGREVQEFLQDDLGPEGLA 213 (441)
T ss_pred CCCCCCCCHHHHHHHHH---HCCCCEEEECCCCCCCHHHHHHHHHHHCC-CCCEEEEECCCCHHHHHHHHHHHHCCCCCC
T ss_conf 77631036015653300---20364666316899987899999986416-773787522651899999999872024522
Q ss_pred HHHEEEEECC--------CHHHHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf 3344897258--------489999999999744897689981433322
Q gi|255764460|r 119 LKNLLISQPD--------TGEQALEITDMLVRSGAVDIIVIDSVAALT 158 (363)
Q Consensus 119 ~~~l~~~~~~--------~~E~~~~i~~~li~~~~~~liViDSi~al~ 158 (363)
T Consensus 214 rsvvV~atsd~p~~~R~~a~~~A~aiAEyfrd~G~~VLl~~Dsltr~A 261 (441)
T PRK08927 214 RSVVVVATSDEPALMRRQAAYLTLAIAEYFRDQGKDVLCLMDSVTRFA 261 (441)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHH
T ss_conf 458999637898788799998755899999977996799834602888