HHsearch alignment for GI: 255764460 and conserved domain: PRK09302
>PRK09302 circadian clock protein KaiC; Reviewed.
Probab=99.88 E-value=1.5e-20 Score=149.62 Aligned_cols=207 Identities=24% Similarity=0.308 Sum_probs=126.3
Q ss_pred CCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCH--HHHHHHCCCHHH-
Q ss_conf 55014772789997238972688079997068723789999998752008987999973885566--889981988334-
Q gi|255764460|r 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS--IYARKLGVDLKN- 121 (363)
Q Consensus 45 ~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~--~~a~~~Gvd~~~- 121 (363)
T Consensus 245 ~~rv~tGi~~LD~llg-GGl~~GsstLi~Gp~GtGKTtla~qFl~~~a~~GE~~l~~~FeE~~~~l~~~a~~~G~dl~~~ 323 (501)
T PRK09302 245 NERISSGVPDLDEMCG-GGFFRGSIILVSGATGTGKTLLVSKFAEAACRRGERCLLFAFEESRAQLVRNATSWGIDLEEM 323 (501)
T ss_pred CCCCCCCCHHHHHHHC-CCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCHHHHHHHHHHCCCCHHHH
T ss_conf 2000479732788725-997589469998899988899999999999865990899999679999999999739984888
Q ss_pred -----EEE--EECC--CHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCC
Q ss_conf -----489--7258--4899999999997448976899814333220265543455530224788876776777764201
Q gi|255764460|r 122 -----LLI--SQPD--TGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISR 192 (363)
Q Consensus 122 -----l~~--~~~~--~~E~~~~i~~~li~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~~~~k 192 (363)
T Consensus 324 ~~~G~l~i~~~~p~~~~~~e~~~~i~~~v~~~~~~rVvIDsls~~~~~--~----------~~~~-~r~~l~~L~~~Lk~ 390 (501)
T PRK09302 324 ERKGLLKIICARPESTGLEDHLQIIKREIEEFKPSRVAVDPLSALARG--G----------SLNE-FRQFVIRLTDYLKQ 390 (501)
T ss_pred HHCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCHHHHHHH--C----------CHHH-HHHHHHHHHHHHHH
T ss_conf 748947999837000598999999999999729989999580687652--6----------8599-99999999999976
Q ss_pred CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEE-EEEEEEEECCCCCCCCEEEEEEE
Q ss_conf 78189998634114566546651256553111111248975045534457724767-99987740577898515899986
Q gi|255764460|r 193 SKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGN-QTRVKVVKNKMASPFKQVEFDIM 271 (363)
Q Consensus 193 ~~~~~i~iNQ~r~~ig~m~g~p~~~~GG~al~~~aS~rl~i~k~~~ik~~~~~iG~-~v~~kv~Knk~~~P~~~a~~~i~ 271 (363)
T Consensus 391 ~gvT~l~t~~~~~~----~g~~~~t~~--~iS~l~D~ii~Lry~E~--~-----g~l~R~i~VlK~R~s~h~~~iRe~~I 457 (501)
T PRK09302 391 EEITGLFTNLTPDF----MGSHSITES--HISSLTDTWILLQYVEI--N-----GEMNRALNVLKMRGSWHSKQIREFVI 457 (501)
T ss_pred CCCEEEEEEECCCC----CCCCCCCCC--CHHHHCCEEEEEEEEEE--C-----CEEEEEEEEEEECCCCCCCCEEEEEE
T ss_conf 89789997612355----676644766--60011124789998713--8-----99989899999368965775378998
Q ss_pred CCCCCCC
Q ss_conf 1874231
Q gi|255764460|r 272 YGEGISF 278 (363)
Q Consensus 272 fg~GI~~ 278 (363)
T Consensus 458 t~~Gi~v 464 (501)
T PRK09302 458 TDKGIHI 464 (501)
T ss_pred CCCCEEE
T ss_conf 7996797