HHsearch alignment for GI: 255764460 and conserved domain: PRK09354
>PRK09354 recA recombinase A; Provisional.
Probab=100.00 E-value=0 Score=817.78 Aligned_cols=334 Identities=70% Similarity=1.087 Sum_probs=324.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHH
Q ss_conf 16769999999999986761887379703665533465501477278999723897268807999706872378999999
Q gi|255764460|r 8 NIVDKSKALEAALSQIQRVYGKGAIMQLGSQGSIFEGIEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHT 87 (363)
Q Consensus 8 ~~~~k~~~l~~~~~~i~k~~g~~~~~~lg~~~~~~~~~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~ 87 (363)
T Consensus 3 ~~~~~~~~l~~a~~~i~k~fg~g~im~l~~~~~--~~v~~isTGsl~LD~aLGiGG~P~GRivEi~G~esSGKTtlal~~ 80 (350)
T PRK09354 3 MDEDKQKALEAALKQIEKQFGKGSIMRLGDDES--MDVETISTGSLALDIALGIGGLPKGRIVEIYGPESSGKTTLALHA 80 (350)
T ss_pred CCHHHHHHHHHHHHHHHHHHCCCCEEECCCCCC--CCCCEECCCCHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHH
T ss_conf 566899999999999998609874477788888--776654477178999875899678708999889877799999999
Q ss_pred HHHHHHCCCEEEEEECCCCCCHHHHHHHCCCHHHEEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHH
Q ss_conf 87520089879999738855668899819883344897258489999999999744897689981433322026554345
Q gi|255764460|r 88 IAQSQKTGGTCAFVDAEHALDSIYARKLGVDLKNLLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALTPRAEIEGDM 167 (363)
Q Consensus 88 ~a~~qk~g~~~~~iD~E~~~~~~~a~~~Gvd~~~l~~~~~~~~E~~~~i~~~li~~~~~~liViDSi~al~p~~Eie~~~ 167 (363)
T Consensus 81 iaeaQk~Gg~~a~iDaE~ald~~~a~~lGVd~d~llv~qpd~~Eqal~i~e~Lvrsg~vd~IVvDSVaAL~pk~Eieg~m 160 (350)
T PRK09354 81 IAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADALVRSGAVDLIVVDSVAALVPKAEIEGEM 160 (350)
T ss_pred HHHHHHCCCCEEEEEECCCCCHHHHHHCCCCHHHEEEECCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHCCC
T ss_conf 99999759947999600027988999849771571785686799999999999854884189982533457688873133
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEE
Q ss_conf 55302247888767767777642017818999863411456654665125655311111124897504553445772476
Q gi|255764460|r 168 GESLPGMQARLMSQALRKLTSSISRSKCILVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITG 247 (363)
Q Consensus 168 ~d~~~g~~ar~ms~~lrkl~~~~~k~~~~~i~iNQ~r~~ig~m~g~p~~~~GG~al~~~aS~rl~i~k~~~ik~~~~~iG 247 (363)
T Consensus 161 gd~~vG~qARlmSqalRKlt~~i~ks~t~~IfINQlR~kiGvmfG~petT~GG~ALkFyaSvRl~irr~~~iK~g~~~iG 240 (350)
T PRK09354 161 GDSHVGLQARLMSQALRKLTGNINKSNTTVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGTIKDGDEVIG 240 (350)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEHHHCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCEEEE
T ss_conf 54226389999999999999998557828999743232146606898777763300121228884123563135883588
Q ss_pred EEEEEEEEECCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHCCCCEECCCEEEECCEEECCHHHHHHHHHHHHHHHHHHH
Q ss_conf 79998774057789851589998618742311159999973286230274478889450303899999986679999999
Q gi|255764460|r 248 NQTRVKVVKNKMASPFKQVEFDIMYGEGISFFGELIDLGVKASIVDKSGAWFSFKGQRLGQGRENSKIFLRENIEIAENI 327 (363)
Q Consensus 248 ~~v~~kv~Knk~~~P~~~a~~~i~fg~GI~~~~~lldla~~~giI~k~Gawy~~~~e~~gqGk~~~~~~l~enp~l~~~i 327 (363)
T Consensus 241 ~~ikvkvvKNK~apPfk~ae~dI~yg~GI~~~~elldla~~~gii~KsGaWysy~~~~~gQG~~~~~~~l~en~~~~~~i 320 (350)
T PRK09354 241 NRTKVKVVKNKVAPPFKQAEFDIMYGEGISREGELIDLGVELGIIEKSGAWYSYNGEKIGQGRENAKQYLKENPELADEI 320 (350)
T ss_pred EEEEEEEEECCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHCCCEEEEECCEEECCEEECCHHHHHHHHHHHCHHHHHHH
T ss_conf 89999998568689975699998717766725479999997798783024099899870450999999998798999999
Q ss_pred HHHHHHHHCCCCCCCC
Q ss_conf 9999998177754555
Q gi|255764460|r 328 ESLLRQNAGLVADSLL 343 (363)
Q Consensus 328 ~~~ire~~~~~~~~~~ 343 (363)
T Consensus 321 ~~~i~~~~~~~~~~~~ 336 (350)
T PRK09354 321 EKKIREKLGLASPAAE 336 (350)
T ss_pred HHHHHHHHCCCCCCCC
T ss_conf 9999998589998766