HHsearch alignment for GI: 255764460 and conserved domain: PRK09361
>PRK09361 radB DNA repair and recombination protein RadB; Provisional.
Probab=100.00 E-value=3e-42 Score=286.74 Aligned_cols=214 Identities=27% Similarity=0.463 Sum_probs=175.8
Q ss_pred CCCCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHH-CCCH----
Q ss_conf 55014772789997238972688079997068723789999998752008987999973885566889981-9883----
Q gi|255764460|r 45 IEVVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSIYARKL-GVDL---- 119 (363)
Q Consensus 45 ~~~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~~~a~~~-Gvd~---- 119 (363)
T Consensus 2 ~erisTG~~~lD~~Lg-GGi~~G~itei~G~pG~GKTtl~lq~a~~~~~~g~~vlYidtE~-~~~er~~qi~~~~~~~~~ 79 (224)
T PRK09361 2 EELLPTGCKSLDELLG-GGIERGTITQIYGPPGSGKTNICIQLAVEAARQGKKVIYIDTEG-LSPERFKQIAGEDFEELL 79 (224)
T ss_pred CCEECCCCHHHHHHHC-CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEECCCC-CCHHHHHHHHCCCHHHHH
T ss_conf 8530379789998626-99888879999899998599999999999997499099967876-788999998565734542
Q ss_pred HHEEEEECCCHHHHHHHH---HHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCE
Q ss_conf 344897258489999999---99974489768998143332202655434555302247888767767777642017818
Q gi|255764460|r 120 KNLLISQPDTGEQALEIT---DMLVRSGAVDIIVIDSVAALTPRAEIEGDMGESLPGMQARLMSQALRKLTSSISRSKCI 196 (363)
Q Consensus 120 ~~l~~~~~~~~E~~~~i~---~~li~~~~~~liViDSi~al~p~~Eie~~~~d~~~g~~ar~ms~~lrkl~~~~~k~~~~ 196 (363)
T Consensus 80 ~~i~~~~~~~~~~~~~~i~~~~~~~~-~~~~lvVIDSi~~~~-~~e~~~----~~~~~~~~~l~~~~~~L~~~a~~~~~~ 153 (224)
T PRK09361 80 SNIIIFEPSSFEEQREAIQKAEKIAK-ENVGLIVLDSATSLY-RLELDD----NDNSKLNRELGKQISHLLSLARKHNIA 153 (224)
T ss_pred HCCEEECCCCHHHHHHHHHHHHHHHH-CCCCEEEEECCHHHE-EHHCCC----CCCHHHHHHHHHHHHHHHHHHHHCCCE
T ss_conf 06147247988999999999998750-587389996230100-000145----765899999999999999999971986
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEEEEEEEEECCCCCCCCEEEEEEECCCCC
Q ss_conf 99986341145665466512565531111112489750455344577247679998774057789851589998618742
Q gi|255764460|r 197 LVFINQMRMKIGVMFGSPETTTGGNALKFYSSVRLDIRRVGSIKDKDSITGNQTRVKVVKNKMASPFKQVEFDIMYGEGI 276 (363)
Q Consensus 197 ~i~iNQ~r~~ig~m~g~p~~~~GG~al~~~aS~rl~i~k~~~ik~~~~~iG~~v~~kv~Knk~~~P~~~a~~~i~fg~GI 276 (363)
T Consensus 154 vvl~nqV~~~~~~~~~~p---aGg~~l~h~~d~~l~le~~~-----~---~-~R~l~v~Knr~~p~~~~~~f~it-~~Gi 220 (224)
T PRK09361 154 VVITNQVYSDIDSDGLRP---LGGHTLEHWSKAILRLEKLR-----N---G-KRRATLEKHRSRPEGESAEFRIT-DRGI 220 (224)
T ss_pred EEEEEEEEECCCCCCCCC---CCCCCEEEEEEEEEEEEECC-----C---C-EEEEEEEECCCCCCCCEEEEEEC-CCCC
T ss_conf 999966885267654444---65412221057999996258-----9---7-79999975898999967999986-8986
Q ss_pred CCC
Q ss_conf 311
Q gi|255764460|r 277 SFF 279 (363)
Q Consensus 277 ~~~ 279 (363)
T Consensus 221 ~~v 223 (224)
T PRK09361 221 EDV 223 (224)
T ss_pred CCC
T ss_conf 457