HHsearch alignment for GI: 255764460 and conserved domain: PRK11889

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional.
Probab=97.18  E-value=0.0042  Score=39.16  Aligned_cols=83  Identities=22%  Similarity=0.348  Sum_probs=55.8

Q ss_pred             CEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCH-------HHHHHHCCCHHHEEEEECCCHHHHHHHHHHH
Q ss_conf             079997068723789999998752008987999973885566-------8899819883344897258489999999999
Q gi|255764460|r   68 RIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDS-------IYARKLGVDLKNLLISQPDTGEQALEITDML  140 (363)
Q Consensus        68 ri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~-------~~a~~~Gvd~~~l~~~~~~~~E~~~~i~~~l  140 (363)
T Consensus       242 q~IALVGPTGVGKTTTIAKLAArf~~~~KkVALITtD-TYRIGAVEQLKTYAeIMgVPV~V--V~dp~eL~~AL---~~l  315 (436)
T PRK11889        242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTD-HSRIGTVQQLQDYVKTIGFEVIA--VRDEAAMTRAL---TYF  315 (436)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECC-CCHHHHHHHHHHHHHHHCCCEEE--ECCHHHHHHHH---HHH
T ss_conf             1799989999888999999999986169808999806-63476999999999984994399--68889999999---987


Q ss_pred             HHCCCCCEEEEECCCC
Q ss_conf             7448976899814333
Q gi|255764460|r  141 VRSGAVDIIVIDSVAA  156 (363)
Q Consensus       141 i~~~~~~liViDSi~a  156 (363)
T Consensus       316 kdka~~DLILIDTAGR  331 (436)
T PRK11889        316 KEEARVDYILIDTAGK  331 (436)
T ss_pred             HHCCCCCEEEEECCCC
T ss_conf             6336888899929898