HHsearch alignment for GI: 255764460 and conserved domain: PRK12726

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional.
Probab=98.31  E-value=2.3e-05  Score=53.51  Aligned_cols=95  Identities=28%  Similarity=0.372  Sum_probs=66.8

Q ss_pred             HHHCCCCCC--------CCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHH-------HHHHHCCCHHH
Q ss_conf             972389726--------880799970687237899999987520089879999738855668-------89981988334
Q gi|255764460|r   57 IALGIGGFP--------KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI-------YARKLGVDLKN  121 (363)
Q Consensus        57 ~~Lg~GG~p--------~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~~-------~a~~~Gvd~~~  121 (363)
T Consensus       189 ~~~~-~~~~~~~~~~l~~g~VIaLVGvnGvGKTTTiAKLA~~l~~~gkkV~LVAaD-TFRaAAiEQLk~~g~rlgVpV--  264 (407)
T PRK12726        189 PYLS-GKLAVEDSFDLSNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTD-TFRSGAVEQFQGYADKLDVEL--  264 (407)
T ss_pred             HHHC-CCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECC-CCCHHHHHHHHHHHHHHCCEE--
T ss_conf             9753-897703202303690899989998978999999999999779917999706-677889999999999979649--


Q ss_pred             EEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf             4897258489999999999744897689981433322
Q gi|255764460|r  122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT  158 (363)
Q Consensus       122 l~~~~~~~~E~~~~i~~~li~~~~~~liViDSi~al~  158 (363)
T Consensus       265 -~~~-~d-pa~l~~av~~~a~~~~~DvVIIDTAGRl~  298 (407)
T PRK12726        265 -IVA-TS-PAELEEAVQYMTYVNCVDHILIDTVGRNY  298 (407)
T ss_pred             -EEE-CC-HHHHHHHHHHHHHCCCCCEEEEECCCCCC
T ss_conf             -981-88-89999999999862899989996999881