HHsearch alignment for GI: 255764460 and conserved domain: PRK12726
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional.
Probab=98.31 E-value=2.3e-05 Score=53.51 Aligned_cols=95 Identities=28% Similarity=0.372 Sum_probs=66.8
Q ss_pred HHHCCCCCC--------CCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHH-------HHHHHCCCHHH
Q ss_conf 972389726--------880799970687237899999987520089879999738855668-------89981988334
Q gi|255764460|r 57 IALGIGGFP--------KGRIVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALDSI-------YARKLGVDLKN 121 (363)
Q Consensus 57 ~~Lg~GG~p--------~Gri~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~~~-------~a~~~Gvd~~~ 121 (363)
T Consensus 189 ~~~~-~~~~~~~~~~l~~g~VIaLVGvnGvGKTTTiAKLA~~l~~~gkkV~LVAaD-TFRaAAiEQLk~~g~rlgVpV-- 264 (407)
T PRK12726 189 PYLS-GKLAVEDSFDLSNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTD-TFRSGAVEQFQGYADKLDVEL-- 264 (407)
T ss_pred HHHC-CCCCCCCEEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECC-CCCHHHHHHHHHHHHHHCCEE--
T ss_conf 9753-897703202303690899989998978999999999999779917999706-677889999999999979649--
Q ss_pred EEEEECCCHHHHHHHHHHHHHCCCCCEEEEECCCCCC
Q ss_conf 4897258489999999999744897689981433322
Q gi|255764460|r 122 LLISQPDTGEQALEITDMLVRSGAVDIIVIDSVAALT 158 (363)
Q Consensus 122 l~~~~~~~~E~~~~i~~~li~~~~~~liViDSi~al~ 158 (363)
T Consensus 265 -~~~-~d-pa~l~~av~~~a~~~~~DvVIIDTAGRl~ 298 (407)
T PRK12726 265 -IVA-TS-PAELEEAVQYMTYVNCVDHILIDTVGRNY 298 (407)
T ss_pred -EEE-CC-HHHHHHHHHHHHHCCCCCEEEEECCCCCC
T ss_conf -981-88-89999999999862899989996999881