HHsearch alignment for GI: 255764460 and conserved domain: PRK12727
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional.
Probab=96.77 E-value=0.0043 Score=39.14 Aligned_cols=88 Identities=23% Similarity=0.473 Sum_probs=57.1
Q ss_pred CCCCCCEEEEEECCCCHHHHHHHHHHHHHH-HCC-CEEEEEECCCCCCH-------HHHHHHCCCHHHEEEEECCCHHHH
Q ss_conf 726880799970687237899999987520-089-87999973885566-------889981988334489725848999
Q gi|255764460|r 63 GFPKGRIVEIYGPESSGKTTLALHTIAQSQ-KTG-GTCAFVDAEHALDS-------IYARKLGVDLKNLLISQPDTGEQA 133 (363)
Q Consensus 63 G~p~Gri~ei~G~~~sGKTtlal~~~a~~q-k~g-~~~~~iD~E~~~~~-------~~a~~~Gvd~~~l~~~~~~~~E~~ 133 (363)
T Consensus 344 ~~~~gGv~AlvGpTGvGKTTT~aKlAa~~~~~~g~~~valit~D-tyRiga~eQL~~y~~ilgvpv-----~~~~~~~~l 417 (557)
T PRK12727 344 PLERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTD-TQRVGGREQLHSYGRQLGIAV-----HEADSAESL 417 (557)
T ss_pred HHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECC-CCCHHHHHHHHHHHHHHCCEE-----EEECCHHHH
T ss_conf 15407647874377767311799999999997399818999726-640879999999999839757-----982899999
Q ss_pred HHHHHHHHHCCCCCEEEEECCCCCCCH
Q ss_conf 999999974489768998143332202
Q gi|255764460|r 134 LEITDMLVRSGAVDIIVIDSVAALTPR 160 (363)
Q Consensus 134 ~~i~~~li~~~~~~liViDSi~al~p~ 160 (363)
T Consensus 418 ~~~l~~l---~~~~lvliDTaG-~~~r 440 (557)
T PRK12727 418 LDLLERL---RDYKLVLIDTAG-MGQR 440 (557)
T ss_pred HHHHHHH---CCCCEEEEECCC-CCCC
T ss_conf 9999983---699989994999-8846