HHsearch alignment for GI: 255764460 and conserved domain: PRK13341
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed.
Probab=97.13 E-value=0.0012 Score=42.70 Aligned_cols=91 Identities=23% Similarity=0.414 Sum_probs=54.2
Q ss_pred CCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHC------------------------------CC
Q ss_conf 014772789997238972688079997068723789999998752008------------------------------98
Q gi|255764460|r 47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------------------------------GG 96 (363)
Q Consensus 47 ~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~------------------------------g~ 96 (363)
T Consensus 36 llg~g~-~Lrr~i~~~~~~S--~I-l~GPPGtGKTTLA-~iIA~~t~~~F~~lsAv~sgvkdlr~ii~~A~~~~~~~g~~ 110 (726)
T PRK13341 36 ILGEGR-LLRRAIKADRVGS--LI-LYGPPGVGKTTLA-RIIANHTRAHFSSLNAVLAGVKDLRAEVDAAKERLERHGKR 110 (726)
T ss_pred HCCCCC-HHHHHHHCCCCCE--EE-EECCCCCCHHHHH-HHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 428982-8999997699982--78-8897999999999-99988748867998562037799999999999998745996
Q ss_pred EEEEEECCCCCCHH-------HHHH-----HCCC------------HHH--EEEEECCCHHHHHHHHHHHHH
Q ss_conf 79999738855668-------8998-----1988------------334--489725848999999999974
Q gi|255764460|r 97 TCAFVDAEHALDSI-------YARK-----LGVD------------LKN--LLISQPDTGEQALEITDMLVR 142 (363)
Q Consensus 97 ~~~~iD~E~~~~~~-------~a~~-----~Gvd------------~~~--l~~~~~~~~E~~~~i~~~li~ 142 (363)
T Consensus 111 tILFIDEIHRfNK~QQD~LLp~vE~G~i~LIGATTENP~F~vn~ALlSR~~vf~L~~L~~~dl~~il~rAl~ 182 (726)
T PRK13341 111 TILFIDEVHRFNKAQQDALLPWVENGTVTLIGATTENPYFEVNKALVSRSRLFRLKSLEDEDLHQLLKRALQ 182 (726)
T ss_pred EEEEEECHHHCCHHHHHHHHHHHCCCEEEEEEECCCCCCEEECHHHHHHCEEEEECCCCHHHHHHHHHHHHH
T ss_conf 599986254258878998788860683899970478974364298883234667438999999999999987