HHsearch alignment for GI: 255764460 and conserved domain: PRK13341

>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed.
Probab=97.13  E-value=0.0012  Score=42.70  Aligned_cols=91  Identities=23%  Similarity=0.414  Sum_probs=54.2

Q ss_pred             CCCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHC------------------------------CC
Q ss_conf             014772789997238972688079997068723789999998752008------------------------------98
Q gi|255764460|r   47 VVSSGSLGLDIALGIGGFPKGRIVEIYGPESSGKTTLALHTIAQSQKT------------------------------GG   96 (363)
Q Consensus        47 ~i~TG~~~lD~~Lg~GG~p~Gri~ei~G~~~sGKTtlal~~~a~~qk~------------------------------g~   96 (363)
T Consensus        36 llg~g~-~Lrr~i~~~~~~S--~I-l~GPPGtGKTTLA-~iIA~~t~~~F~~lsAv~sgvkdlr~ii~~A~~~~~~~g~~  110 (726)
T PRK13341         36 ILGEGR-LLRRAIKADRVGS--LI-LYGPPGVGKTTLA-RIIANHTRAHFSSLNAVLAGVKDLRAEVDAAKERLERHGKR  110 (726)
T ss_pred             HCCCCC-HHHHHHHCCCCCE--EE-EECCCCCCHHHHH-HHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf             428982-8999997699982--78-8897999999999-99988748867998562037799999999999998745996


Q ss_pred             EEEEEECCCCCCHH-------HHHH-----HCCC------------HHH--EEEEECCCHHHHHHHHHHHHH
Q ss_conf             79999738855668-------8998-----1988------------334--489725848999999999974
Q gi|255764460|r   97 TCAFVDAEHALDSI-------YARK-----LGVD------------LKN--LLISQPDTGEQALEITDMLVR  142 (363)
Q Consensus        97 ~~~~iD~E~~~~~~-------~a~~-----~Gvd------------~~~--l~~~~~~~~E~~~~i~~~li~  142 (363)
T Consensus       111 tILFIDEIHRfNK~QQD~LLp~vE~G~i~LIGATTENP~F~vn~ALlSR~~vf~L~~L~~~dl~~il~rAl~  182 (726)
T PRK13341        111 TILFIDEVHRFNKAQQDALLPWVENGTVTLIGATTENPYFEVNKALVSRSRLFRLKSLEDEDLHQLLKRALQ  182 (726)
T ss_pred             EEEEEECHHHCCHHHHHHHHHHHCCCEEEEEEECCCCCCEEECHHHHHHCEEEEECCCCHHHHHHHHHHHHH
T ss_conf             599986254258878998788860683899970478974364298883234667438999999999999987