HHsearch alignment for GI: 255764460 and conserved domain: PRK13849
>PRK13849 putative crown gall tumor protein VirC1; Provisional.
Probab=97.61 E-value=0.0009 Score=43.43 Aligned_cols=90 Identities=12% Similarity=0.019 Sum_probs=53.8
Q ss_pred EEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCC-HHHHHHH---CCCHHHEEEEECCCHHHHHHHHHHHHHCC
Q ss_conf 7999706872378999999875200898799997388556-6889981---98833448972584899999999997448
Q gi|255764460|r 69 IVEIYGPESSGKTTLALHTIAQSQKTGGTCAFVDAEHALD-SIYARKL---GVDLKNLLISQPDTGEQALEITDMLVRSG 144 (363)
Q Consensus 69 i~ei~G~~~sGKTtlal~~~a~~qk~g~~~~~iD~E~~~~-~~~a~~~---Gvd~~~l~~~~~~~~E~~~~i~~~li~~~ 144 (363)
T Consensus 4 i~~~~~KGG~GKtT~a~~la~~~~~~g~~v~~iD~Dpq~s~~~W~e~a~~~~~~~~~~~v~~~~~~~~l~~~~e~-~~~~ 82 (231)
T PRK13849 4 LTFCSFKGGAGKTTALMGLCAALASDGKRVALFEADENRPLTRWKENALRSNTWDPACEVYAADELPLLEAAYED-AELQ 82 (231)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEECCCHHHHHHHHHH-HHHC
T ss_conf 999618998769999999999999789959999689986889999876525898877523405652578999988-7536
Q ss_pred CCCEEEEECCCCCCC
Q ss_conf 976899814333220
Q gi|255764460|r 145 AVDIIVIDSVAALTP 159 (363)
Q Consensus 145 ~~~liViDSi~al~p 159 (363)
T Consensus 83 ~~D~VIIDtpg~~s~ 97 (231)
T PRK13849 83 GFDYALADTHGGSSE 97 (231)
T ss_pred CCCEEEECCCCCCCH
T ss_conf 998899818997758